Query 012167
Match_columns 469
No_of_seqs 195 out of 1489
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 23:45:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012167.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012167hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1237 H+/oligopeptide sympor 100.0 1.7E-68 3.7E-73 563.1 27.5 447 1-468 116-569 (571)
2 COG3104 PTR2 Dipeptide/tripept 100.0 3E-50 6.5E-55 405.8 23.6 366 36-468 116-496 (498)
3 TIGR00926 2A1704 Peptide:H+ sy 100.0 2.5E-42 5.3E-47 370.7 33.6 360 36-462 84-654 (654)
4 PF00854 PTR2: POT family; In 100.0 1E-43 2.3E-48 361.9 14.6 351 1-402 13-371 (372)
5 PRK15462 dipeptide/tripeptide 100.0 2.2E-41 4.8E-46 352.3 30.8 365 38-467 101-487 (493)
6 PRK10207 dipeptide/tripeptide 100.0 5.4E-37 1.2E-41 322.7 32.0 367 38-468 106-485 (489)
7 TIGR00924 yjdL_sub1_fam amino 100.0 1E-36 2.2E-41 320.0 31.2 359 37-464 102-473 (475)
8 PRK09584 tppB putative tripept 100.0 1.9E-35 4E-40 312.3 30.2 361 37-464 112-484 (500)
9 PRK11646 multidrug resistance 99.5 4.1E-12 8.8E-17 130.8 24.4 294 36-462 98-391 (400)
10 PRK03545 putative arabinose tr 99.5 1.2E-11 2.5E-16 126.7 24.9 283 36-460 96-381 (390)
11 PRK11551 putative 3-hydroxyphe 99.5 2.4E-11 5.2E-16 124.8 27.1 302 36-468 102-405 (406)
12 PRK10489 enterobactin exporter 99.5 2E-11 4.4E-16 126.0 26.4 295 36-466 109-406 (417)
13 PRK09874 drug efflux system pr 99.5 8.2E-12 1.8E-16 128.0 22.1 302 36-468 106-407 (408)
14 TIGR00893 2A0114 d-galactonate 99.5 4.1E-11 9E-16 120.9 26.4 86 36-127 81-166 (399)
15 TIGR00902 2A0127 phenyl propri 99.4 5.9E-11 1.3E-15 121.3 24.9 278 35-453 92-373 (382)
16 TIGR00900 2A0121 H+ Antiporter 99.4 3.4E-11 7.3E-16 120.8 22.8 268 36-416 91-362 (365)
17 PRK10054 putative transporter; 99.4 1.6E-11 3.5E-16 126.1 20.4 82 37-125 96-177 (395)
18 PRK05122 major facilitator sup 99.4 1.6E-10 3.5E-15 118.4 27.5 280 36-460 111-390 (399)
19 PRK15402 multidrug efflux syst 99.4 2.5E-10 5.5E-15 117.4 27.9 85 36-126 100-184 (406)
20 PRK11128 putative 3-phenylprop 99.4 1.1E-10 2.4E-15 119.2 24.3 262 35-416 92-354 (382)
21 cd06174 MFS The Major Facilita 99.4 1.2E-10 2.7E-15 115.6 22.2 263 36-456 86-349 (352)
22 PRK12382 putative transporter; 99.3 3.1E-10 6.8E-15 116.1 25.1 278 35-458 110-388 (392)
23 TIGR00894 2A0114euk Na(+)-depe 99.3 4.3E-10 9.2E-15 118.0 25.1 83 37-125 131-214 (465)
24 PF07690 MFS_1: Major Facilita 99.3 4.7E-11 1E-15 119.2 16.5 267 37-408 85-352 (352)
25 PRK06814 acylglycerophosphoeth 99.3 1.7E-10 3.6E-15 134.2 23.5 287 35-415 106-394 (1140)
26 TIGR00879 SP MFS transporter, 99.3 5.7E-10 1.2E-14 115.8 24.2 85 37-127 127-214 (481)
27 TIGR00899 2A0120 sugar efflux 99.3 1.7E-09 3.7E-14 109.3 25.2 88 36-127 86-173 (375)
28 PRK11663 regulatory protein Uh 99.3 1.3E-09 2.8E-14 113.5 24.5 82 36-123 110-191 (434)
29 TIGR00710 efflux_Bcr_CflA drug 99.3 1.8E-09 3.9E-14 109.5 24.8 87 36-128 92-178 (385)
30 TIGR00892 2A0113 monocarboxyla 99.3 2.3E-10 5.1E-15 119.8 18.5 285 37-416 107-394 (455)
31 PF05977 MFS_3: Transmembrane 99.3 1.5E-09 3.2E-14 115.1 24.6 267 35-416 101-368 (524)
32 PRK10213 nepI ribonucleoside t 99.3 2.7E-09 5.8E-14 109.7 25.9 83 35-123 106-188 (394)
33 PRK11010 ampG muropeptide tran 99.2 4.4E-09 9.6E-14 111.3 27.5 85 36-126 106-191 (491)
34 PRK15011 sugar efflux transpor 99.2 2.5E-09 5.5E-14 109.7 24.9 72 51-127 119-191 (393)
35 TIGR00901 2A0125 AmpG-related 99.2 1.5E-09 3.3E-14 109.5 22.7 261 36-401 82-355 (356)
36 PRK10504 putative transporter; 99.2 9.2E-09 2E-13 107.9 28.4 87 36-128 97-183 (471)
37 TIGR00895 2A0115 benzoate tran 99.2 3.3E-09 7.1E-14 107.6 23.9 84 36-125 104-187 (398)
38 PRK14995 methyl viologen resis 99.2 2.1E-09 4.6E-14 113.8 23.2 87 35-126 92-178 (495)
39 TIGR00890 2A0111 Oxalate/Forma 99.2 1.3E-09 2.9E-14 109.6 20.3 84 36-126 90-173 (377)
40 PRK11102 bicyclomycin/multidru 99.2 9.4E-09 2E-13 104.3 26.2 84 37-126 79-162 (377)
41 PRK12307 putative sialic acid 99.2 2.9E-09 6.2E-14 110.1 22.3 78 36-119 105-182 (426)
42 PRK10406 alpha-ketoglutarate t 99.2 7E-09 1.5E-13 107.8 25.2 81 36-122 123-211 (432)
43 TIGR00792 gph sugar (Glycoside 99.2 8.2E-09 1.8E-13 107.0 25.7 266 37-418 99-381 (437)
44 TIGR00711 efflux_EmrB drug res 99.2 1.3E-09 2.7E-14 114.6 19.5 314 36-415 89-408 (485)
45 PRK03633 putative MFS family t 99.2 1.1E-08 2.4E-13 104.4 24.5 71 36-112 93-163 (381)
46 TIGR00903 2A0129 major facilit 99.2 9.3E-09 2E-13 104.8 23.8 83 36-125 78-160 (368)
47 PRK10091 MFS transport protein 99.1 1.1E-08 2.3E-13 104.6 24.2 85 35-125 89-173 (382)
48 PRK11195 lysophospholipid tran 99.1 1.6E-08 3.4E-13 103.9 25.5 295 41-466 92-389 (393)
49 PRK10077 xylE D-xylose transpo 99.1 1.8E-08 3.8E-13 105.9 26.4 85 36-126 119-211 (479)
50 PRK09705 cynX putative cyanate 99.1 1.5E-08 3.2E-13 104.1 24.9 81 36-123 96-177 (393)
51 PRK11273 glpT sn-glycerol-3-ph 99.1 1.8E-08 4E-13 105.3 26.0 84 36-125 119-203 (452)
52 KOG2532 Permease of the major 99.1 8.4E-09 1.8E-13 107.7 22.5 311 37-459 128-447 (466)
53 PRK11652 emrD multidrug resist 99.1 3.9E-08 8.4E-13 100.7 26.7 83 36-124 95-177 (394)
54 PRK03699 putative transporter; 99.1 3.6E-08 7.7E-13 101.2 26.1 85 36-126 94-179 (394)
55 TIGR00883 2A0106 metabolite-pr 99.1 5.8E-09 1.3E-13 105.5 19.9 81 38-124 97-185 (394)
56 PRK09952 shikimate transporter 99.1 5.5E-08 1.2E-12 101.4 27.3 78 38-121 126-211 (438)
57 TIGR01299 synapt_SV2 synaptic 99.1 3.5E-08 7.5E-13 108.5 26.6 86 36-127 254-352 (742)
58 COG2814 AraJ Arabinose efflux 99.1 3.4E-08 7.3E-13 99.9 24.3 89 34-128 98-186 (394)
59 TIGR00898 2A0119 cation transp 99.1 5.8E-08 1.2E-12 102.9 26.5 83 36-127 179-261 (505)
60 PRK08633 2-acyl-glycerophospho 99.1 3.6E-08 7.7E-13 114.7 26.5 268 36-415 102-382 (1146)
61 TIGR00891 2A0112 putative sial 99.1 1.3E-08 2.8E-13 103.7 20.2 82 36-123 99-182 (405)
62 PRK09528 lacY galactoside perm 99.1 1.2E-08 2.6E-13 105.6 19.8 139 273-460 265-404 (420)
63 COG2271 UhpC Sugar phosphate p 99.0 8.6E-09 1.9E-13 103.4 17.4 309 36-461 116-436 (448)
64 TIGR00881 2A0104 phosphoglycer 99.0 1.1E-08 2.4E-13 102.9 18.3 86 36-127 82-168 (379)
65 PRK11043 putative transporter; 99.0 1.1E-07 2.4E-12 97.6 25.6 85 36-126 93-177 (401)
66 PRK10473 multidrug efflux syst 99.0 1.9E-07 4.2E-12 95.4 27.4 84 37-126 91-174 (392)
67 PRK03893 putative sialic acid 99.0 3.3E-08 7.2E-13 104.3 21.9 78 36-119 107-184 (496)
68 PF13347 MFS_2: MFS/sugar tran 99.0 7.6E-08 1.6E-12 100.0 23.8 310 36-465 102-427 (428)
69 TIGR01301 GPH_sucrose GPH fami 99.0 3.9E-07 8.4E-12 95.5 28.6 331 38-461 115-473 (477)
70 PRK15403 multidrug efflux syst 99.0 1.9E-07 4.1E-12 96.6 25.8 86 35-126 102-187 (413)
71 PRK11902 ampG muropeptide tran 99.0 2.7E-07 5.9E-12 94.9 26.8 84 36-125 93-177 (402)
72 PRK10642 proline/glycine betai 99.0 2.1E-07 4.7E-12 98.4 26.6 77 38-120 119-203 (490)
73 PRK09848 glucuronide transport 99.0 2.7E-07 5.8E-12 96.4 26.2 91 309-418 292-389 (448)
74 PRK09556 uhpT sugar phosphate 99.0 4.1E-08 8.9E-13 103.2 20.2 84 35-124 120-206 (467)
75 TIGR02332 HpaX 4-hydroxyphenyl 99.0 2.4E-07 5.2E-12 95.8 25.1 85 36-126 95-185 (412)
76 TIGR00897 2A0118 polyol permea 99.0 3.8E-07 8.2E-12 93.9 26.2 73 37-115 105-178 (402)
77 PRK15075 citrate-proton sympor 98.9 3.2E-07 6.9E-12 95.5 25.0 73 39-117 119-199 (434)
78 TIGR00712 glpT glycerol-3-phos 98.9 1.6E-07 3.5E-12 97.8 22.4 83 37-125 118-201 (438)
79 TIGR00896 CynX cyanate transpo 98.9 1.9E-07 4.1E-12 94.1 22.1 80 36-122 86-167 (355)
80 TIGR00882 2A0105 oligosacchari 98.9 1.3E-07 2.9E-12 96.9 21.1 104 313-454 286-390 (396)
81 TIGR00889 2A0110 nucleoside tr 98.9 2.3E-07 4.9E-12 96.2 22.3 147 276-461 257-404 (418)
82 TIGR00887 2A0109 phosphate:H+ 98.9 8.1E-07 1.8E-11 94.3 25.5 83 37-125 115-220 (502)
83 KOG1330 Sugar transporter/spin 98.9 6.9E-09 1.5E-13 105.1 8.9 86 35-126 119-205 (493)
84 TIGR01272 gluP glucose/galacto 98.9 7.9E-07 1.7E-11 88.4 23.7 88 33-126 6-109 (310)
85 TIGR02718 sider_RhtX_FptX side 98.8 1.3E-06 2.7E-11 89.5 25.1 56 361-416 309-365 (390)
86 PRK09669 putative symporter Ya 98.8 1.6E-06 3.4E-11 90.5 25.8 66 354-419 318-390 (444)
87 PLN00028 nitrate transmembrane 98.8 6.7E-07 1.5E-11 94.3 22.0 83 36-125 123-214 (476)
88 TIGR00788 fbt folate/biopterin 98.8 3.2E-07 6.9E-12 96.6 17.9 84 39-126 122-205 (468)
89 PRK10429 melibiose:sodium symp 98.7 5E-06 1.1E-10 87.6 25.4 65 354-418 323-394 (473)
90 PRK10133 L-fucose transporter; 98.6 1.1E-05 2.4E-10 84.2 23.2 63 35-103 115-177 (438)
91 TIGR00926 2A1704 Peptide:H+ sy 98.6 2.3E-06 5E-11 93.1 17.5 253 36-338 81-342 (654)
92 TIGR00885 fucP L-fucose:H+ sym 98.5 1.3E-05 2.9E-10 82.8 22.2 86 35-126 92-203 (410)
93 KOG3764 Vesicular amine transp 98.5 2.3E-06 5E-11 85.4 15.4 89 35-128 157-245 (464)
94 PRK11462 putative transporter; 98.5 8.5E-05 1.8E-09 78.1 26.7 84 37-125 109-199 (460)
95 TIGR00886 2A0108 nitrite extru 98.5 3.9E-06 8.5E-11 84.5 15.3 78 36-120 90-178 (366)
96 KOG2533 Permease of the major 98.4 6.3E-05 1.4E-09 79.2 23.7 85 35-125 132-222 (495)
97 PRK03545 putative arabinose tr 98.4 7.1E-06 1.5E-10 83.9 16.1 136 273-457 47-182 (390)
98 PF03209 PUCC: PUCC protein; 98.4 0.00016 3.5E-09 73.2 24.6 88 313-418 277-364 (403)
99 KOG1330 Sugar transporter/spin 98.4 7E-07 1.5E-11 90.7 7.0 144 273-464 71-214 (493)
100 TIGR02332 HpaX 4-hydroxyphenyl 98.4 1.7E-05 3.7E-10 82.0 17.6 143 273-458 46-188 (412)
101 PF11700 ATG22: Vacuole efflux 98.3 0.0007 1.5E-08 71.3 28.2 82 363-460 388-469 (477)
102 PRK15034 nitrate/nitrite trans 98.3 0.00038 8.3E-09 72.7 25.2 60 35-101 126-185 (462)
103 COG2807 CynX Cyanate permease 98.2 0.00026 5.6E-09 70.3 21.5 85 36-127 98-183 (395)
104 PRK14995 methyl viologen resis 98.2 7.4E-05 1.6E-09 79.2 19.4 137 273-458 44-181 (495)
105 PF01306 LacY_symp: LacY proto 98.2 0.00013 2.7E-09 74.8 19.9 98 353-467 310-408 (412)
106 COG2814 AraJ Arabinose efflux 98.2 4.2E-05 9E-10 77.6 16.3 140 272-460 50-189 (394)
107 TIGR00710 efflux_Bcr_CflA drug 98.2 4.8E-05 1.1E-09 76.9 16.8 140 273-461 43-182 (385)
108 TIGR00711 efflux_EmrB drug res 98.2 3.9E-05 8.5E-10 80.5 16.5 140 272-460 39-178 (485)
109 PF03825 Nuc_H_symport: Nucleo 98.2 0.00049 1.1E-08 71.0 23.3 127 308-461 270-397 (400)
110 PF07690 MFS_1: Major Facilita 98.2 4E-05 8.6E-10 76.3 14.8 134 273-455 35-168 (352)
111 PRK10054 putative transporter; 98.2 6.7E-05 1.5E-09 77.1 16.3 111 273-415 46-156 (395)
112 PRK11551 putative 3-hydroxyphe 98.1 0.00011 2.3E-09 75.4 17.6 111 273-415 53-163 (406)
113 TIGR00880 2_A_01_02 Multidrug 98.1 0.00012 2.7E-09 62.0 15.1 108 277-416 5-112 (141)
114 TIGR00900 2A0121 H+ Antiporter 98.1 0.0001 2.2E-09 73.7 16.8 117 273-416 37-153 (365)
115 PRK10091 MFS transport protein 98.1 0.00011 2.3E-09 75.1 17.0 136 273-457 41-176 (382)
116 PRK11646 multidrug resistance 98.1 0.0001 2.2E-09 75.9 16.9 107 277-415 53-159 (400)
117 PRK10213 nepI ribonucleoside t 98.1 0.00016 3.6E-09 74.2 18.4 111 274-416 59-169 (394)
118 TIGR00805 oat sodium-independe 98.1 0.00011 2.3E-09 80.4 17.3 87 36-128 171-279 (633)
119 KOG0569 Permease of the major 98.1 0.0015 3.2E-08 68.4 24.0 88 35-128 114-203 (485)
120 PRK11663 regulatory protein Uh 98.1 0.00017 3.6E-09 75.1 17.2 135 273-456 61-195 (434)
121 PRK15403 multidrug efflux syst 98.0 0.00011 2.3E-09 76.1 15.5 136 276-460 57-192 (413)
122 TIGR00893 2A0114 d-galactonate 98.0 9.1E-05 2E-09 74.5 14.4 137 273-458 32-168 (399)
123 TIGR00891 2A0112 putative sial 98.0 0.00019 4.1E-09 73.0 16.6 112 273-416 50-161 (405)
124 PRK09874 drug efflux system pr 98.0 0.00045 9.8E-09 70.6 18.8 138 273-460 57-194 (408)
125 PRK10504 putative transporter; 98.0 0.0003 6.4E-09 73.8 17.7 139 274-461 49-187 (471)
126 COG2211 MelB Na+/melibiose sym 98.0 0.0023 5E-08 66.5 23.4 86 312-416 303-395 (467)
127 KOG3764 Vesicular amine transp 98.0 3.1E-05 6.8E-10 77.5 9.0 147 271-466 107-254 (464)
128 COG2223 NarK Nitrate/nitrite t 98.0 0.001 2.3E-08 67.3 19.8 85 38-130 106-193 (417)
129 PF03092 BT1: BT1 family; Int 97.9 0.00025 5.3E-09 74.0 15.6 88 37-128 86-173 (433)
130 PRK10473 multidrug efflux syst 97.9 0.00048 1E-08 70.4 17.2 136 274-458 42-177 (392)
131 PRK15402 multidrug efflux syst 97.9 0.00076 1.6E-08 69.3 18.0 134 275-457 53-186 (406)
132 PF06609 TRI12: Fungal trichot 97.9 0.0052 1.1E-07 66.0 24.6 87 35-128 129-215 (599)
133 TIGR00895 2A0115 benzoate tran 97.9 0.00017 3.7E-09 73.0 12.7 112 273-416 55-166 (398)
134 TIGR00806 rfc RFC reduced fola 97.8 0.0033 7.1E-08 65.5 21.5 85 36-128 114-201 (511)
135 TIGR01299 synapt_SV2 synaptic 97.8 0.00097 2.1E-08 73.8 18.9 111 273-415 205-315 (742)
136 TIGR00886 2A0108 nitrite extru 97.8 0.0014 3E-08 65.9 18.8 111 272-414 39-149 (366)
137 PRK03633 putative MFS family t 97.8 0.0011 2.5E-08 67.4 18.2 112 272-415 43-154 (381)
138 PRK09705 cynX putative cyanate 97.8 0.00064 1.4E-08 69.7 16.4 111 272-415 46-156 (393)
139 TIGR00881 2A0104 phosphoglycer 97.8 6.4E-05 1.4E-09 75.4 8.9 138 273-459 33-171 (379)
140 cd06174 MFS The Major Facilita 97.8 0.00048 1E-08 68.1 15.0 112 273-416 37-148 (352)
141 TIGR00879 SP MFS transporter, 97.8 0.00042 9.2E-09 71.7 15.0 110 273-411 74-183 (481)
142 PRK11102 bicyclomycin/multidru 97.8 0.00045 9.8E-09 69.9 14.8 139 273-460 29-167 (377)
143 PRK03699 putative transporter; 97.8 0.0011 2.3E-08 68.0 17.4 135 273-455 45-179 (394)
144 PRK12382 putative transporter; 97.8 0.00094 2E-08 68.2 16.6 120 273-416 54-173 (392)
145 COG0738 FucP Fucose permease [ 97.7 0.014 3E-07 59.1 23.7 65 34-104 101-165 (422)
146 TIGR00903 2A0129 major facilit 97.7 0.00073 1.6E-08 68.9 15.2 90 354-461 78-167 (368)
147 PRK12307 putative sialic acid 97.7 0.0015 3.2E-08 67.5 17.5 112 273-416 56-167 (426)
148 TIGR00924 yjdL_sub1_fam amino 97.7 0.00058 1.3E-08 72.1 14.7 142 273-463 51-196 (475)
149 PRK09556 uhpT sugar phosphate 97.7 0.00018 3.9E-09 75.6 10.5 146 273-459 67-212 (467)
150 KOG2504 Monocarboxylate transp 97.7 0.0013 2.9E-08 69.8 16.5 110 313-459 367-476 (509)
151 PRK11652 emrD multidrug resist 97.7 0.002 4.4E-08 65.8 17.5 112 273-416 46-157 (394)
152 TIGR00885 fucP L-fucose:H+ sym 97.7 0.0025 5.5E-08 65.9 18.3 115 272-415 40-154 (410)
153 TIGR00890 2A0111 Oxalate/Forma 97.7 0.001 2.3E-08 66.5 15.0 137 273-459 41-177 (377)
154 TIGR00894 2A0114euk Na(+)-depe 97.7 0.00042 9E-09 72.7 12.5 139 274-458 80-218 (465)
155 TIGR00712 glpT glycerol-3-phos 97.7 0.0016 3.4E-08 67.9 16.6 144 273-460 64-207 (438)
156 KOG2615 Permease of the major 97.6 0.004 8.7E-08 62.4 17.9 60 357-416 354-413 (451)
157 PRK10207 dipeptide/tripeptide 97.6 0.00078 1.7E-08 71.4 14.1 134 282-463 62-198 (489)
158 PRK05122 major facilitator sup 97.6 0.0011 2.5E-08 67.7 14.8 121 272-416 53-173 (399)
159 PRK10077 xylE D-xylose transpo 97.6 0.0027 5.9E-08 66.5 17.6 122 274-415 59-180 (479)
160 TIGR00805 oat sodium-independe 97.6 0.00067 1.5E-08 74.2 13.2 134 272-416 70-233 (633)
161 TIGR00806 rfc RFC reduced fola 97.6 0.0066 1.4E-07 63.3 19.4 83 311-415 92-174 (511)
162 TIGR00898 2A0119 cation transp 97.6 0.00076 1.6E-08 71.4 13.1 132 273-456 130-261 (505)
163 PRK11043 putative transporter; 97.6 0.0031 6.8E-08 64.5 17.2 136 273-457 44-179 (401)
164 PRK11273 glpT sn-glycerol-3-ph 97.6 0.0031 6.6E-08 66.0 17.1 142 274-460 67-209 (452)
165 PRK03893 putative sialic acid 97.6 0.0038 8.1E-08 65.8 17.8 112 273-416 58-169 (496)
166 PRK10489 enterobactin exporter 97.5 0.0018 4E-08 66.7 14.4 118 272-416 54-171 (417)
167 KOG4686 Predicted sugar transp 97.5 0.0033 7.1E-08 60.6 14.5 88 361-461 358-445 (459)
168 PRK09584 tppB putative tripept 97.5 0.0027 5.9E-08 67.5 15.7 116 312-464 89-206 (500)
169 PRK11195 lysophospholipid tran 97.5 0.002 4.3E-08 66.2 13.7 109 273-416 41-149 (393)
170 TIGR00901 2A0125 AmpG-related 97.5 0.0074 1.6E-07 60.6 17.7 85 314-416 60-144 (356)
171 TIGR00892 2A0113 monocarboxyla 97.5 0.003 6.5E-08 66.2 15.3 136 273-458 57-193 (455)
172 KOG3762 Predicted transporter 97.4 0.0043 9.2E-08 64.7 15.6 148 270-466 406-554 (618)
173 TIGR00880 2_A_01_02 Multidrug 97.4 0.00043 9.3E-09 58.6 7.2 87 36-128 50-136 (141)
174 KOG2533 Permease of the major 97.4 0.0032 7E-08 66.4 15.0 95 354-459 133-227 (495)
175 PTZ00207 hypothetical protein; 97.4 0.0059 1.3E-07 65.8 16.9 118 310-462 90-208 (591)
176 PRK10133 L-fucose transporter; 97.4 0.0071 1.5E-07 63.1 17.2 113 273-414 64-176 (438)
177 TIGR00897 2A0118 polyol permea 97.4 0.0073 1.6E-07 62.1 17.0 115 273-415 51-166 (402)
178 PRK11010 ampG muropeptide tran 97.4 0.021 4.5E-07 60.6 20.5 132 289-456 60-192 (491)
179 TIGR00887 2A0109 phosphate:H+ 97.3 0.0037 8E-08 66.4 14.3 115 275-415 61-175 (502)
180 TIGR00899 2A0120 sugar efflux 97.3 0.004 8.7E-08 62.7 14.0 140 273-461 36-178 (375)
181 PRK06814 acylglycerophosphoeth 97.3 0.0033 7.1E-08 73.6 15.0 63 354-416 107-169 (1140)
182 PLN00028 nitrate transmembrane 97.3 0.013 2.7E-07 61.9 17.9 136 279-458 80-218 (476)
183 KOG0255 Synaptic vesicle trans 97.3 0.23 4.9E-06 52.9 27.3 83 34-125 168-250 (521)
184 PRK08633 2-acyl-glycerophospho 97.2 0.006 1.3E-07 71.3 16.1 115 273-416 50-164 (1146)
185 TIGR01301 GPH_sucrose GPH fami 97.2 0.0084 1.8E-07 63.1 15.2 177 273-463 42-222 (477)
186 PRK11902 ampG muropeptide tran 97.2 0.014 3.1E-07 59.8 16.7 108 314-455 71-178 (402)
187 PRK10642 proline/glycine betai 97.2 0.0064 1.4E-07 64.4 14.3 90 312-414 88-177 (490)
188 PRK15034 nitrate/nitrite trans 97.2 0.02 4.2E-07 60.0 17.5 85 311-412 100-184 (462)
189 TIGR00896 CynX cyanate transpo 97.2 0.0084 1.8E-07 60.3 14.4 110 272-415 37-146 (355)
190 COG2270 Permeases of the major 97.0 0.076 1.7E-06 54.2 19.1 87 312-419 319-405 (438)
191 PRK15462 dipeptide/tripeptide 97.0 0.015 3.3E-07 61.5 14.7 136 281-463 56-193 (493)
192 COG2271 UhpC Sugar phosphate p 97.0 0.0059 1.3E-07 62.1 10.9 115 308-460 91-207 (448)
193 KOG0254 Predicted transporter 97.0 0.16 3.5E-06 54.1 22.7 84 36-125 141-225 (513)
194 PF05977 MFS_3: Transmembrane 96.9 0.031 6.6E-07 59.7 16.5 118 272-416 47-164 (524)
195 KOG2816 Predicted transporter 96.8 0.021 4.6E-07 59.8 13.7 84 313-418 310-393 (463)
196 KOG2532 Permease of the major 96.8 0.02 4.3E-07 60.2 13.4 118 308-460 100-217 (466)
197 TIGR00889 2A0110 nucleoside tr 96.8 0.003 6.4E-08 65.5 7.3 86 37-128 308-400 (418)
198 TIGR00883 2A0106 metabolite-pr 96.8 0.014 3E-07 58.8 12.0 90 313-415 67-156 (394)
199 KOG3626 Organic anion transpor 96.8 0.054 1.2E-06 59.2 16.5 90 36-131 236-344 (735)
200 PRK15011 sugar efflux transpor 96.7 0.065 1.4E-06 54.8 16.4 91 354-461 104-196 (393)
201 PRK10406 alpha-ketoglutarate t 96.7 0.045 9.7E-07 56.8 15.4 91 312-415 94-184 (432)
202 TIGR00792 gph sugar (Glycoside 96.6 0.014 3E-07 60.4 10.4 121 273-414 38-159 (437)
203 PRK15075 citrate-proton sympor 96.6 0.091 2E-06 54.5 16.6 91 312-415 87-177 (434)
204 KOG0254 Predicted transporter 96.5 0.033 7.1E-07 59.4 13.3 107 273-411 92-198 (513)
205 PTZ00207 hypothetical protein; 96.5 1.4 3.1E-05 47.7 25.2 79 35-122 118-197 (591)
206 PRK09952 shikimate transporter 96.5 0.051 1.1E-06 56.6 13.9 110 286-415 76-185 (438)
207 KOG3098 Uncharacterized conser 96.3 1.3 2.9E-05 46.2 23.1 159 273-463 278-439 (461)
208 TIGR00882 2A0105 oligosacchari 96.3 0.082 1.8E-06 54.0 13.8 139 273-456 41-180 (396)
209 PF06609 TRI12: Fungal trichot 96.1 0.22 4.9E-06 53.7 16.7 121 261-415 70-190 (599)
210 KOG2563 Permease of the major 96.0 0.092 2E-06 54.0 12.1 45 356-400 360-404 (480)
211 KOG1237 H+/oligopeptide sympor 95.9 0.026 5.5E-07 60.8 8.3 215 38-331 60-276 (571)
212 PF00854 PTR2: POT family; In 95.8 0.073 1.6E-06 54.1 11.0 124 313-465 3-129 (372)
213 KOG2615 Permease of the major 95.8 0.057 1.2E-06 54.4 9.6 112 272-416 70-181 (451)
214 KOG3626 Organic anion transpor 95.8 0.097 2.1E-06 57.2 11.9 152 310-465 161-349 (735)
215 PF03209 PUCC: PUCC protein; 95.7 0.87 1.9E-05 46.5 17.9 97 314-415 53-149 (403)
216 TIGR00902 2A0127 phenyl propri 95.7 0.17 3.7E-06 51.5 13.0 61 354-416 93-153 (382)
217 TIGR02718 sider_RhtX_FptX side 95.5 0.2 4.4E-06 51.0 13.0 87 355-458 97-183 (390)
218 KOG0253 Synaptic vesicle trans 95.5 2.9 6.4E-05 42.4 20.0 77 35-119 164-240 (528)
219 PRK11128 putative 3-phenylprop 95.5 0.17 3.7E-06 51.5 12.1 112 272-416 41-153 (382)
220 PF03137 OATP: Organic Anion T 95.3 0.0038 8.2E-08 66.8 -0.9 174 273-465 41-256 (539)
221 TIGR01272 gluP glucose/galacto 95.2 0.22 4.7E-06 49.4 11.6 63 353-415 8-70 (310)
222 PF03137 OATP: Organic Anion T 95.2 0.0045 9.7E-08 66.3 -0.5 92 36-133 140-253 (539)
223 PF11700 ATG22: Vacuole efflux 95.0 0.068 1.5E-06 56.4 7.6 88 35-128 378-466 (477)
224 KOG2325 Predicted transporter/ 94.9 0.29 6.2E-06 51.4 11.9 92 358-466 391-482 (488)
225 PRK09528 lacY galactoside perm 94.9 0.029 6.2E-07 57.9 4.6 85 37-127 315-400 (420)
226 PF00083 Sugar_tr: Sugar (and 94.8 3E-05 6.6E-10 80.7 -18.2 82 36-123 101-185 (451)
227 PRK11462 putative transporter; 94.6 1.5 3.3E-05 46.0 16.7 84 314-412 83-167 (460)
228 KOG0569 Permease of the major 94.6 1.3 2.9E-05 46.6 15.7 58 354-411 115-172 (485)
229 COG2223 NarK Nitrate/nitrite t 94.5 0.63 1.4E-05 47.5 12.7 120 269-416 45-164 (417)
230 PRK09669 putative symporter Ya 94.5 0.24 5.1E-06 51.6 10.1 60 353-412 107-167 (444)
231 PF05978 UNC-93: Ion channel r 94.3 1.4 3E-05 39.1 13.0 62 354-415 88-149 (156)
232 PF13347 MFS_2: MFS/sugar tran 94.1 0.27 5.8E-06 50.9 9.5 157 282-461 41-200 (428)
233 KOG0255 Synaptic vesicle trans 93.9 0.81 1.8E-05 48.7 13.0 83 354-456 170-252 (521)
234 KOG2325 Predicted transporter/ 93.8 0.77 1.7E-05 48.2 12.0 157 273-462 74-232 (488)
235 COG0738 FucP Fucose permease [ 93.5 4.2 9.2E-05 41.6 16.2 91 308-416 75-165 (422)
236 COG2807 CynX Cyanate permease 93.1 1.9 4.2E-05 43.4 12.9 140 273-462 50-189 (395)
237 TIGR00769 AAA ADP/ATP carrier 93.1 13 0.00029 39.1 22.0 54 360-413 381-435 (472)
238 PRK10429 melibiose:sodium symp 92.9 1 2.2E-05 47.4 11.5 115 276-411 48-163 (473)
239 KOG2816 Predicted transporter 92.4 3.3 7.2E-05 43.5 14.5 130 279-460 71-200 (463)
240 PF03092 BT1: BT1 family; Int 92.1 1.5 3.3E-05 45.6 11.6 85 314-416 62-149 (433)
241 KOG4686 Predicted sugar transp 91.2 0.44 9.6E-06 46.4 5.7 77 40-122 355-434 (459)
242 KOG2504 Monocarboxylate transp 90.8 0.15 3.3E-06 54.2 2.5 88 37-130 388-476 (509)
243 PF06813 Nodulin-like: Nodulin 89.4 6.6 0.00014 37.7 12.2 122 309-463 64-185 (250)
244 PF03825 Nuc_H_symport: Nucleo 88.8 0.97 2.1E-05 46.6 6.5 81 43-129 307-394 (400)
245 KOG3574 Acetyl-CoA transporter 88.3 32 0.00068 35.3 16.2 60 356-415 370-429 (510)
246 KOG0252 Inorganic phosphate tr 87.6 1.1 2.3E-05 46.6 5.7 151 270-452 81-235 (538)
247 COG2211 MelB Na+/melibiose sym 87.3 13 0.00029 38.9 13.8 64 352-415 109-173 (467)
248 PF01891 CbiM: Cobalt uptake s 86.6 11 0.00024 34.9 11.7 99 277-386 106-204 (205)
249 TIGR00939 2a57 Equilibrative N 85.8 11 0.00024 39.4 12.3 123 308-459 72-196 (437)
250 PRK09848 glucuronide transport 85.5 9.8 0.00021 39.4 12.0 110 273-402 47-157 (448)
251 TIGR00788 fbt folate/biopterin 84.5 20 0.00043 37.7 13.7 80 356-453 121-203 (468)
252 PF05631 DUF791: Protein of un 83.8 22 0.00047 35.9 12.7 98 29-127 113-213 (354)
253 KOG0637 Sucrose transporter an 83.4 7.8 0.00017 40.3 9.6 166 228-412 32-200 (498)
254 COG3104 PTR2 Dipeptide/tripept 82.2 2.9 6.2E-05 43.9 6.1 118 311-464 92-211 (498)
255 TIGR00769 AAA ADP/ATP carrier 82.0 73 0.0016 33.7 16.6 43 374-416 148-190 (472)
256 PF02487 CLN3: CLN3 protein; 76.7 26 0.00056 36.1 10.9 124 289-460 73-196 (402)
257 PF03219 TLC: TLC ATP/ADP tran 74.8 1.2E+02 0.0026 32.2 17.5 39 60-104 167-205 (491)
258 PF00083 Sugar_tr: Sugar (and 74.6 0.018 3.8E-07 59.9 -13.1 61 354-414 101-161 (451)
259 KOG4332 Predicted sugar transp 71.1 86 0.0019 30.7 12.0 42 359-400 348-389 (454)
260 PF01306 LacY_symp: LacY proto 70.2 25 0.00055 36.3 9.1 29 272-300 45-73 (412)
261 COG2270 Permeases of the major 67.3 6.6 0.00014 40.4 4.1 83 40-128 344-427 (438)
262 COG0477 ProP Permeases of the 67.0 15 0.00033 34.2 6.4 79 36-119 93-174 (338)
263 COG0477 ProP Permeases of the 66.9 69 0.0015 29.5 11.0 63 354-416 93-157 (338)
264 KOG2563 Permease of the major 66.0 1E+02 0.0022 32.4 12.2 58 358-415 143-200 (480)
265 PRK07331 cobalt transport prot 63.9 98 0.0021 30.9 11.5 107 277-388 107-220 (322)
266 PF01770 Folate_carrier: Reduc 59.5 1.7E+02 0.0037 30.3 12.6 61 354-415 93-153 (412)
267 PF06963 FPN1: Ferroportin1 (F 59.3 2.3E+02 0.005 29.6 22.7 64 352-415 353-416 (432)
268 KOG3574 Acetyl-CoA transporter 57.9 1.5E+02 0.0032 30.7 11.4 162 276-461 73-238 (510)
269 KOG0252 Inorganic phosphate tr 56.9 20 0.00043 37.6 5.3 68 57-124 62-129 (538)
270 PF07672 MFS_Mycoplasma: Mycop 54.1 2.1E+02 0.0046 27.6 13.1 58 79-136 6-68 (267)
271 PRK08319 cobalt transport prot 53.9 1.4E+02 0.0031 28.0 10.3 31 359-389 183-213 (224)
272 PF02487 CLN3: CLN3 protein; 49.5 3.2E+02 0.0069 28.3 21.9 62 354-415 334-395 (402)
273 PRK11909 cobalt transport prot 49.1 2.2E+02 0.0049 26.9 10.8 36 354-389 182-218 (230)
274 KOG3810 Micronutrient transpor 47.5 53 0.0011 33.3 6.4 102 353-465 324-427 (433)
275 PRK11715 inner membrane protei 45.0 3.7E+02 0.0081 28.1 12.4 46 316-379 306-351 (436)
276 COG3202 ATP/ADP translocase [E 43.6 4.3E+02 0.0093 28.1 16.4 93 363-462 152-248 (509)
277 PRK06265 cobalt transport prot 43.6 2.6E+02 0.0057 25.6 10.9 95 278-389 102-198 (199)
278 PF06123 CreD: Inner membrane 42.4 4.2E+02 0.0091 27.6 12.7 20 316-335 300-319 (430)
279 TIGR00123 cbiM cobalamin biosy 41.6 3E+02 0.0064 25.7 11.5 100 277-388 109-212 (214)
280 PF14007 YtpI: YtpI-like prote 39.9 83 0.0018 25.0 5.3 52 86-138 35-86 (89)
281 PRK03612 spermidine synthase; 38.4 78 0.0017 33.9 6.6 78 42-126 115-194 (521)
282 KOG3098 Uncharacterized conser 36.8 3.9E+02 0.0084 28.2 11.2 63 354-416 101-163 (461)
283 PRK03612 spermidine synthase; 36.0 5.7E+02 0.012 27.3 13.5 25 391-415 145-169 (521)
284 PF06645 SPC12: Microsomal sig 30.7 1.5E+02 0.0032 22.8 5.2 53 79-134 8-60 (76)
285 PF13000 Acatn: Acetyl-coenzym 30.5 79 0.0017 33.6 4.9 68 351-418 400-469 (544)
286 KOG2662 Magnesium transporters 26.7 1.2E+02 0.0026 31.0 5.2 37 429-466 374-410 (414)
287 KOG2927 Membrane component of 26.1 1.1E+02 0.0025 30.6 4.8 33 379-414 205-237 (372)
288 PF06963 FPN1: Ferroportin1 (F 25.9 7.7E+02 0.017 25.7 11.8 30 270-299 38-67 (432)
289 KOG3880 Predicted small molecu 24.3 39 0.00085 33.6 1.3 81 308-414 89-169 (409)
290 PF05978 UNC-93: Ion channel r 23.5 1.7E+02 0.0036 25.8 5.1 58 36-99 88-145 (156)
291 KOG1479 Nucleoside transporter 22.9 8.6E+02 0.019 25.2 13.8 86 355-457 117-202 (406)
292 KOG4332 Predicted sugar transp 22.7 1.2E+02 0.0026 29.7 4.2 83 37-125 344-426 (454)
293 PF11712 Vma12: Endoplasmic re 22.7 2.3E+02 0.0051 24.4 5.8 45 276-326 81-125 (142)
294 PF05393 Hum_adeno_E3A: Human 20.7 1.2E+02 0.0026 23.9 3.0 28 437-464 33-60 (94)
295 TIGR02230 ATPase_gene1 F0F1-AT 20.2 4.4E+02 0.0096 21.4 6.4 34 85-118 49-86 (100)
No 1
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-68 Score=563.05 Aligned_cols=447 Identities=43% Similarity=0.696 Sum_probs=400.1
Q ss_pred CceeeehhhhhcCCCCCCCCCcccCCCcccCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHH
Q 012167 1 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF 80 (469)
Q Consensus 1 ~g~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~ 80 (469)
+|+++||++++.|+++|++|........|+++...+...+|.+|.++++|+|+.|||+.++++|||++.+++++.++.++
T Consensus 116 ~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~f 195 (571)
T KOG1237|consen 116 LGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSF 195 (571)
T ss_pred HHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccc
Confidence 37889999999999999998434446689999999999999999999999999999999999999998888888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccC
Q 012167 81 FNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKS 160 (469)
Q Consensus 81 f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~ 160 (469)
|+|+|+.+|+|++++.++..|++++.||.++|.+++++|++++++|+.+.+.|++++|.++|++.+.+|+++++++++..
T Consensus 196 FnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~ 275 (571)
T KOG1237|consen 196 FNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAV 275 (571)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred -C-CCCcc--ccccccCCCCCCCCcc-ccccccCCCCCCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHH
Q 012167 161 -K-NSSNA--VTEVHSSPTCSNESRD-EGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFP 235 (469)
Q Consensus 161 -~-~~~~~--~~~~~~~~~~~~~~~~-d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~ 235 (469)
. +++.. ...+.....+++.+++ |++++..+.++ .++...++|+.|+.++|||+|.++|++|
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~--------------~~~~~~~~w~lct~~~Vee~K~~lr~~P 341 (571)
T KOG1237|consen 276 VSLDPEELYYDCTDSVAIEGTKPFRFLDKAALKTSDDL--------------KDGLDANPWRLCTVTQVEEVKAVLRLLP 341 (571)
T ss_pred CCCcchhccccccccccccCCcccchhhHhhccCCccc--------------ccccccCCccCCCceehhhhhhhhhhhH
Confidence 1 11111 1111123345667788 88887654321 0122457899999999999999999999
Q ss_pred HHHhhHHHHHhhhcchhHHHHHHHHcccCCCC-cccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHH
Q 012167 236 IFMSTIMLNCCLAQLSTFSVQQAATMNTKLGS-LKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRI 314 (469)
Q Consensus 236 l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g-~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri 314 (469)
+|.+.++||+++.|+.|.++.|+.+||+++++ +++|+++++.++.+.++++.|+++++.+|+.||.++++++.++++|+
T Consensus 342 i~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqri 421 (571)
T KOG1237|consen 342 IWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRI 421 (571)
T ss_pred HHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhhee
Confidence 99999999999999999999999999999987 99999999999999999999999999999999999887789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHH
Q 012167 315 GTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATS 394 (469)
Q Consensus 315 ~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~g 394 (469)
++|++++.++|.+++++|.+|++.+.++ ..+..++|++||+|||+++|+||+|.+++++||+|++||++|||+.++
T Consensus 422 g~G~~~si~sm~~aa~vE~krl~~~~~~----~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~a 497 (571)
T KOG1237|consen 422 GIGLVLSILSMAVAGIVEAKRLKTAVSL----LVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATA 497 (571)
T ss_pred eccchHHHHHHHHHHHHHHHHhhhhhhc----cCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHH
Confidence 9999999999999999999999887651 122468999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcC-CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccCC
Q 012167 395 LSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFG-SNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 468 (469)
Q Consensus 395 l~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~-~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~~~~~ 468 (469)
+|+++.++|++++.+++.++...|++ ..+|+ + +|+|.+|+++|||+++.++.++...|+.++++|++++..
T Consensus 498 l~l~t~a~G~~lss~Lv~~v~~~t~~--~~~w~-~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~ 569 (571)
T KOG1237|consen 498 LWLLTVAVGNYLSSVLVSLVQFSTGK--AAEWL-GFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDK 569 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC--CcccC-ChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeecccc
Confidence 99999999999999999999987753 34799 7 999999999999999999999999999999999998764
No 2
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-50 Score=405.83 Aligned_cols=366 Identities=19% Similarity=0.297 Sum_probs=286.8
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
....+|+++++|++|+|++|||++++++|||+++|| |||.+|++||+++|+|++++|++++++++++||+.+|.++
T Consensus 116 ~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp----rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~a 191 (498)
T COG3104 116 GPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP----RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLA 191 (498)
T ss_pred cccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc----ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 367899999999999999999999999999999998 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcccccC--CCCCCchh------HHHHH---HHHH-HhhccCCCCCccccccccCCCCCCCCcc-
Q 012167 116 TATILLSIPIFLLGSPFYRNKI--PTGSPLTT------IFKVL---TAAI-FNTCKSKNSSNAVTEVHSSPTCSNESRD- 182 (469)
Q Consensus 116 ~v~~~i~~ii~~~~~~~~~~~~--p~~~~l~~------~~~v~---~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 182 (469)
+++|++++++|+++++++.+.. |+.+|.+. ...++ ..+. ... ... +..+.
T Consensus 192 avGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~----------------~~~~~~ 254 (498)
T COG3104 192 AVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLL-LNQ----------------NTFSGV 254 (498)
T ss_pred HHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHH-HHH----------------HHHHHH
Confidence 9999999999999999987643 33344321 01111 1110 000 000 00000
Q ss_pred -ccccccCCCCCCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHH-H
Q 012167 183 -EGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAA-T 260 (469)
Q Consensus 183 -d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~-~ 260 (469)
....+.. ...++... ..+ ++.+ +|+||+++++++++..++||++|+|++|++..|+. +
T Consensus 255 ~~~~~i~~---------~~~~~~~~-------~~~---~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~ 314 (498)
T COG3104 255 LLVISILI---------AIIYFAEA-------FRS---PKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRN 314 (498)
T ss_pred HHHHHHHH---------HHHHHHHH-------hcc---CccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 0000000 00111100 000 1233 88999999999999999999999999999999985 6
Q ss_pred cccCCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012167 261 MNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAV 340 (469)
Q Consensus 261 ~d~~~~g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~ 340 (469)
+|++..|+++|++|+|++||+++++++|+++++|+|+.++. + ++++..|+++|+++++++++++........
T Consensus 315 v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~--~--~ps~~~KFalGl~l~g~~fl~l~~~~~~~~---- 386 (498)
T COG3104 315 VNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN--K--QPSTPIKFALGLILAGLGFLILLLAGIWFG---- 386 (498)
T ss_pred hcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC--C--CCCcchHHHHHHHHHHHHHHHHHHHHHhhc----
Confidence 78886679999999999999999999999999999998873 3 399999999999999999999887753221
Q ss_pred hcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcccccc
Q 012167 341 NSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITST 420 (469)
Q Consensus 341 ~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~ 420 (469)
++...+|++|++++|+++++||+|++|+++|+++++||++++|.+||.|+++.+.|+.+++.+.+.... +
T Consensus 387 -------~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~-- 456 (498)
T COG3104 387 -------GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-T-- 456 (498)
T ss_pred -------CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-c--
Confidence 012468999999999999999999999999999999999999999999999999999999988875331 1
Q ss_pred CCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccCC
Q 012167 421 YRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 468 (469)
Q Consensus 421 ~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~~~~~ 468 (469)
-+..+..+...+|+.++.+.++..++....+++.++--++
T Consensus 457 --------~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r~~~~ 496 (498)
T COG3104 457 --------DPAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNRMMKG 496 (498)
T ss_pred --------chhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcC
Confidence 0111123345689999999999999998888887765443
No 3
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=100.00 E-value=2.5e-42 Score=370.67 Aligned_cols=360 Identities=23% Similarity=0.435 Sum_probs=294.4
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccC-------Cc
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK-------GW 108 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~-------g~ 108 (469)
+...++++++++++|+|++|||++++++|||++++. ++++++|+|||+++|+|+++++++.+++++++ ||
T Consensus 84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~ 160 (654)
T TIGR00926 84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCY 160 (654)
T ss_pred HHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcch
Confidence 356688999999999999999999999999987543 36899999999999999999999999998554 69
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCcc-ccccc
Q 012167 109 QWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRD-EGNSN 187 (469)
Q Consensus 109 ~~~F~i~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~a~~ 187 (469)
+++|++++++|++++++|..++|+|++++|.++++.+..++++.+++++....+ .....+| |++..
T Consensus 161 ~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~-------------~~~~~~~ld~a~~ 227 (654)
T TIGR00926 161 PLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRS-------------EHWPLHWLDYAKD 227 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCC-------------cccchhHHHHhcc
Confidence 999999999999999999999999988888888888888888888766432100 0001233 43322
Q ss_pred cCCCCCCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCCC
Q 012167 188 VKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGS 267 (469)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g 267 (469)
. ...+++||+|++++++++++..++||+.++|+.|++..|+.+||+++++
T Consensus 228 ~------------------------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~g 277 (654)
T TIGR00926 228 K------------------------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVGG 277 (654)
T ss_pred c------------------------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccCC
Confidence 1 1234679999999999999999999999999999999999999999889
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---------
Q 012167 268 LKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRV--------- 338 (469)
Q Consensus 268 ~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~--------- 338 (469)
+++|+++++++|+++++++.|+++..++|.++|++.+ +++++|+++|++++++++++++++|.++++.
T Consensus 278 ~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~~~~ 354 (654)
T TIGR00926 278 FEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPSANE 354 (654)
T ss_pred EecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcc
Confidence 9999999999999999999999998889998875333 7999999999999999999999999876200
Q ss_pred ---------------------------------h-------------hh------------------------------c
Q 012167 339 ---------------------------------A-------------VN------------------------------S 342 (469)
Q Consensus 339 ---------------------------------~-------------~~------------------------------~ 342 (469)
. .. .
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (654)
T TIGR00926 355 IFLQVLNTDCTICDFSVLSKRVLPHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTDAHELE 434 (654)
T ss_pred eEEEEecCCCCcceEEEEecCCcccccccccCccccccccccccccccccccceEEEEeccccccccCCCCccccceeec
Confidence 0 00 0
Q ss_pred -C----C------C------------------------------------------------------------------
Q 012167 343 -G----L------V------------------------------------------------------------------ 345 (469)
Q Consensus 343 -g----~------~------------------------------------------------------------------ 345 (469)
+ + .
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (654)
T TIGR00926 435 PKISYVLLLSQGGYQLTANTDKPTDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYPANT 514 (654)
T ss_pred CCceEEEEEecCCcceeeeeecCccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccccccccccceeeeee
Confidence 0 0 0
Q ss_pred ----------------------------CCC--C-----------CcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhcc
Q 012167 346 ----------------------------NSS--E-----------PLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDA 384 (469)
Q Consensus 346 ----------------------------~~~--~-----------~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~a 384 (469)
++. + ..++|++||+|||++.++||++.+++++|+.+++|
T Consensus 515 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~ 594 (654)
T TIGR00926 515 CDRIDNAKSSTFLSNQLDMGIYYLIVITENSKIDELQAQIVELVSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQA 594 (654)
T ss_pred cccccccccccccccccccceEEEEEEcCCCCCCcceeEEEEecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhC
Confidence 000 0 12378999999999999999999999999999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012167 385 PLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARY 462 (469)
Q Consensus 385 P~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~ 462 (469)
|++||+..+++|.++.++|+.+...+..+-.. . .+| ..|.+.+.++++..++|.++++.|
T Consensus 595 p~~mks~~~a~~~~~~~~g~~~~~~~~~~~~~-~-----~~~------------~~~~~~~~~~~~~~~~f~~~a~~Y 654 (654)
T TIGR00926 595 PPNMKSVLQALWLLTVAIGNLIVVVIAEFENF-S-----VQA------------AEFFLFASLMLVVMAIFSILAYFY 654 (654)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-h-----HHH------------HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999998766554211 0 122 357778889999999999988765
No 4
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=100.00 E-value=1e-43 Score=361.92 Aligned_cols=351 Identities=32% Similarity=0.519 Sum_probs=243.2
Q ss_pred CceeeehhhhhcCCCCCCCCCcccCCCcccCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHH
Q 012167 1 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF 80 (469)
Q Consensus 1 ~g~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~ 80 (469)
+|+++|+++++.++. + ...+.+.+|+||+++++|+|++|||++++++|||+++++ ++++++
T Consensus 13 ~G~~ll~l~~~~~~~-~---------------~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~---~~~~~~ 73 (372)
T PF00854_consen 13 LGHVLLTLSAIPPSL-P---------------SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD---SRRDSF 73 (372)
T ss_dssp HHHHH--HHHTSSSC----------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT---THHHHH
T ss_pred HHHHHhHHHHhcchh-h---------------hhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch---hhhhhh
Confidence 488999999975554 2 135588999999999999999999999999999998742 368999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHHHHhcCCccccc-CCCCCCchh-HHHHHHHHHHhhc
Q 012167 81 FNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNK-IPTGSPLTT-IFKVLTAAIFNTC 158 (469)
Q Consensus 81 f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~v~~~i~~ii~~~~~~~~~~~-~p~~~~l~~-~~~v~~~a~~~~~ 158 (469)
|+|||+++|+|+++++++++++++++||+++|++++++|++++++|+.++++|+++ +|.++++.+ ...+...+.+++.
T Consensus 74 F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (372)
T PF00854_consen 74 FNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRK 153 (372)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999987 677888777 4444445555544
Q ss_pred cCC-CCCc--cccccccCCCCCCCCcc-ccccccCCCCCCCCCchhHHHHhhhccCCCCCCcc-ccCchhhHHHHHHHHH
Q 012167 159 KSK-NSSN--AVTEVHSSPTCSNESRD-EGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIV-QCTVKEVEEVKIVVKI 233 (469)
Q Consensus 159 ~~~-~~~~--~~~~~~~~~~~~~~~~~-d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~k~~~~~ 233 (469)
... ..+. ................. .++......+ ...|. .++++++++.|.+.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~k~~~~~ 213 (372)
T PF00854_consen 154 LAVPKGSSWLDWALFQYSERSIFGIIVFIRAAVIFFPE--------------------IFFWALFCQVQRVEELKALIRF 213 (372)
T ss_dssp CCH-HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC--------------------HHHHTTTSSTTTHHHCCHHHCH
T ss_pred cccccchHHHHHhhhhhhhhhhhhhhhhccchhhhhhh--------------------hhhcccCCccceeeeeeeeeec
Confidence 320 0000 00000000000000000 0000000000 00011 1345678889999999
Q ss_pred HHHHHhhHHHHHhhhcchhHHHHHHHHcccCCCC-cccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchH
Q 012167 234 FPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGS-LKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQ 312 (469)
Q Consensus 234 l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g-~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ 312 (469)
++++...++|+.++.|.++....|...+|+.+++ +++|+++++++|++++++++|+++++++|+.|+ +++ +++++
T Consensus 214 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~--~~~--~~~~~ 289 (372)
T PF00854_consen 214 LPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR--GIQ--PSPPQ 289 (372)
T ss_dssp HHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HH
T ss_pred cccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh--ccc--chhhh
Confidence 9999999999999999988888888889988888 999999999999999999999999999999984 332 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHH
Q 012167 313 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLA 392 (469)
Q Consensus 313 ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~ 392 (469)
|+++|++++++++++++.+|.+|.....++| ..+.+|+++.|++++++|+++++++.+.+++.+|+++++.+
T Consensus 290 k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~--------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m 361 (372)
T PF00854_consen 290 KFGIGMVFAILAMFVAAIVEIRRLCYAQPCG--------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSM 361 (372)
T ss_dssp HHHHH-HHHHHHHHTTTHHHH---HH----T--------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSS
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhcccccC--------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHH
Confidence 9999999999999999999987776554433 45669999999999999999999999988888888888888
Q ss_pred HHHHHHHHHH
Q 012167 393 TSLSWASLAM 402 (469)
Q Consensus 393 ~gl~~l~~~i 402 (469)
+|+|+.....
T Consensus 362 ~~~~~~~~~~ 371 (372)
T PF00854_consen 362 MGIWFALSAF 371 (372)
T ss_dssp THHHHHHH--
T ss_pred HHHHHHHhcc
Confidence 8888876543
No 5
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=100.00 E-value=2.2e-41 Score=352.33 Aligned_cols=365 Identities=13% Similarity=0.116 Sum_probs=268.2
Q ss_pred HHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHHH
Q 012167 38 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTA 117 (469)
Q Consensus 38 ~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~v 117 (469)
..+++++.++++|.|.++|+.+++++|+|+++|+ +|+++|+++|+++|+|++++|++++++.+++||+.+|.++++
T Consensus 101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~----~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai 176 (493)
T PRK15462 101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP----RRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV 176 (493)
T ss_pred hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc----cccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 3467788889999999999999999999998764 588999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcccccCC-CCCCchh--HHHHH-----HH-----HHHhhccCCCCCccccccccCCCCCCCCcc--
Q 012167 118 TILLSIPIFLLGSPFYRNKIP-TGSPLTT--IFKVL-----TA-----AIFNTCKSKNSSNAVTEVHSSPTCSNESRD-- 182 (469)
Q Consensus 118 ~~~i~~ii~~~~~~~~~~~~p-~~~~l~~--~~~v~-----~~-----a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 182 (469)
++++++++++.++|++.+..+ +.+|.++ ..+.. .. .+...... .....+
T Consensus 177 gm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~ 240 (493)
T PRK15462 177 GMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFW----------------KEWSVYAL 240 (493)
T ss_pred HHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHH
Confidence 999999999888877654211 1223211 00000 00 00000000 000000
Q ss_pred ccccccCCCCCCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHH-HHc
Q 012167 183 EGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQA-ATM 261 (469)
Q Consensus 183 d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa-~~~ 261 (469)
-...+.. -.+++. . .+ .. ...+|+||+..++++++..++||+.|+|.++++.+++ +++
T Consensus 241 ~~~~~~~----------~~~~~~-~--------~~-~~-~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~v 299 (493)
T PRK15462 241 IVATIIG----------LGVLAK-I--------YR-KA-ENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFV 299 (493)
T ss_pred HHHHHHH----------HHHHHH-H--------HH-hc-CCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 0000000 000000 0 00 01 1237899999999999999999999999999999887 589
Q ss_pred ccCCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012167 262 NTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVN 341 (469)
Q Consensus 262 d~~~~g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~ 341 (469)
|++++|+++|++|+|++||++++++.|++.++|.++.|| ++ +++..+|+++|+++.++||+++++.... ...
T Consensus 300 d~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~--~~--~~s~~~Kfa~g~~~~g~~f~~l~~~~~~----~~~ 371 (493)
T PRK15462 300 NRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAG--NR--TVRIWGKFALGLGLMSAGFCILTLSARW----SAM 371 (493)
T ss_pred cchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcC--CC--CCCcHHHHHHHHHHHHHHHHHHHHHHhh----cCC
Confidence 999999999999999999999999999999999887654 22 3899999999999999999999876521 111
Q ss_pred cCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHH-HHHHHHHHHhHhhhcccccc
Q 012167 342 SGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASL-AMGYYFSTVLVSIVNNITST 420 (469)
Q Consensus 342 ~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~-~iG~~l~~~l~~~~~~~t~~ 420 (469)
...+|++|++..|+++|+||++++|.++++++++||++++|++||+|++.. ++|+.+++.+.+.....+..
T Consensus 372 --------~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~ 443 (493)
T PRK15462 372 --------YGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFD 443 (493)
T ss_pred --------CCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 124899999999999999999999999999999999999999999999955 89999999998887532100
Q ss_pred CCCCCCCcCCC---CCchhHHHHHHHHHHHHHHH-H-HHHHHHhhccccccC
Q 012167 421 YRHTPWLFGSN---LNHYHLERFYWLMCILGGLN-F-LHFLFWAARYKYSST 467 (469)
Q Consensus 421 ~~~~~w~~~~~---~n~~~l~~~f~~la~l~l~~-~-l~~~~~~~~~~~~~~ 467 (469)
++. -...++..+|..+++++++. . ++++.+-+.+|.|+|
T Consensus 444 --------~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (493)
T PRK15462 444 --------ASGAINYSINAYIEVFDQITWGALACVGVVLMIWLYQALKFRNR 487 (493)
T ss_pred --------ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 110 01124566788888777665 3 444444455566654
No 6
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=100.00 E-value=5.4e-37 Score=322.68 Aligned_cols=367 Identities=13% Similarity=0.179 Sum_probs=271.2
Q ss_pred HHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHHH
Q 012167 38 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTA 117 (469)
Q Consensus 38 ~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~v 117 (469)
..++++++++++|.|+++|+..++++|+|+++++ ||+++|+++|+++|+|+++||.++|++.+++||+++|.++++
T Consensus 106 ~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~----~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i 181 (489)
T PRK10207 106 DLIFIALGTIAVGNGLFKANPASLLSKCYPPKDP----RLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA 181 (489)
T ss_pred hHHHHHHHHHHhccccccCCHHHHHHHhcCCCch----hhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 3467899999999999999999999999987653 567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCccccc--CCCCCCch--hHHHHH------HHHHHhhccCCCCCccccccccCCCCCCCCcc--ccc
Q 012167 118 TILLSIPIFLLGSPFYRNK--IPTGSPLT--TIFKVL------TAAIFNTCKSKNSSNAVTEVHSSPTCSNESRD--EGN 185 (469)
Q Consensus 118 ~~~i~~ii~~~~~~~~~~~--~p~~~~l~--~~~~v~------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~a 185 (469)
++.++++.+..+++++++. +|++++.. ...... ...+.. ... . .....+ ...
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~-~~~--~-------------~~~~~~~~~~~ 245 (489)
T PRK10207 182 GLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAW-LMH--N-------------VEVANLVLIVL 245 (489)
T ss_pred HHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHH-HHh--h-------------hhHHHHHHHHH
Confidence 9988888888887777553 23333321 111000 000000 000 0 000000 000
Q ss_pred cccCCCCCCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHH-HcccC
Q 012167 186 SNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAA-TMNTK 264 (469)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~-~~d~~ 264 (469)
.... ...|+.+. .+.++ .++++.+..+.+++..++||++|+|..+.+++|++ ++|++
T Consensus 246 ~~i~----------~~~f~~~~-----------~~~~~-~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~ 303 (489)
T PRK10207 246 SIVV----------TIIFFREA-----------FKLDK-TGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHE 303 (489)
T ss_pred HHHH----------HHHHHHHH-----------hcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccc
Confidence 0000 00111100 01112 45677778888888999999999999989988886 68888
Q ss_pred CCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 012167 265 LGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGL 344 (469)
Q Consensus 265 ~~g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~ 344 (469)
..|+++|++++|++|++.++++.|+.++++.++.+| +.+ +++.+|+++|+++.++++++++..+... ...
T Consensus 304 ~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r--~~~--~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~~~--- 373 (489)
T PRK10207 304 ILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSK--GKD--LSMPMKFTLGMFLCSLGFLTAAAAGMWF---ADA--- 373 (489)
T ss_pred ccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhC--CCC--CCcHHHHHHHHHHHHHHHHHHHHHHHhh---cCC---
Confidence 789999999999999999999999999988777655 222 8999999999999999998876654211 101
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCC
Q 012167 345 VNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHT 424 (469)
Q Consensus 345 ~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~ 424 (469)
...+|+||+++.|+++|+||.+.+|++++++++.+|++++|.+||+|++..++|+.+|+.+++.+.....
T Consensus 374 -----~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~----- 443 (489)
T PRK10207 374 -----QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDN----- 443 (489)
T ss_pred -----CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----
Confidence 1247899999999999999999999999999999999999999999999999999999999887753110
Q ss_pred CCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccCC
Q 012167 425 PWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 468 (469)
Q Consensus 425 ~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~~~~~ 468 (469)
.. +|.. .++.+..+|..+++.+++.+++++++.|++++.-++
T Consensus 444 ~~-~~~~-~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~ 485 (489)
T PRK10207 444 IT-DPLE-TLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRMINT 485 (489)
T ss_pred cc-cchh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 00 0111 123457789999999999999999888888765443
No 7
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=100.00 E-value=1e-36 Score=320.01 Aligned_cols=359 Identities=15% Similarity=0.187 Sum_probs=267.0
Q ss_pred hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHH
Q 012167 37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIST 116 (469)
Q Consensus 37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~ 116 (469)
.+.+++++.++++|.|+++|+..++++|+++++++ .+|+++|+++|++.|+|+++||++++++.+++||+++|.+++
T Consensus 102 ~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~---~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~ 178 (475)
T TIGR00924 102 PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM---PRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAA 178 (475)
T ss_pred HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc---ccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 45678899999999999999999999999987653 247789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcccccCCCCCCchhH-----H--HHHH----HHHHhhccCCCCCccccccccCCCCCCCCcc-cc
Q 012167 117 ATILLSIPIFLLGSPFYRNKIPTGSPLTTI-----F--KVLT----AAIFNTCKSKNSSNAVTEVHSSPTCSNESRD-EG 184 (469)
Q Consensus 117 v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~-----~--~v~~----~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~ 184 (469)
+.++++++++++.++.+++.++++++.++. . ..+. ..++..... ... ...+....- .-
T Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~~~ 248 (475)
T TIGR00924 179 VGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLM-HHV---------VIANILLMTVTL 248 (475)
T ss_pred HHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHH-hcc---------HHHHHHHHHHHH
Confidence 999888888888887776544333332211 0 0000 000100000 000 000000000 00
Q ss_pred ccccCCCCCCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHH-HHccc
Q 012167 185 NSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQA-ATMNT 263 (469)
Q Consensus 185 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa-~~~d~ 263 (469)
+..+ ++..... .+ +.++ +++++..+++++++..++||++|+|+.+++.++. +++|+
T Consensus 249 ~~~~-------------~~~~~~~-----~~----~~~~-~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~ 305 (475)
T TIGR00924 249 AVII-------------FFFRLAF-----KP----RLDA-VARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHH 305 (475)
T ss_pred HHHH-------------HHHHHHH-----hc----cCCH-HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc
Confidence 0000 0000000 00 1122 3455666789999999999999999999887654 57999
Q ss_pred CCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 012167 264 KLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSG 343 (469)
Q Consensus 264 ~~~g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g 343 (469)
+++++++|+++++++|++.+++++|++++++.++.|| ++ +++...|+++|+++.+++++.++++.. .++.
T Consensus 306 ~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~--~~--~~~~~~k~~~G~~l~~~~~~~~~~~~~----~~~~-- 375 (475)
T TIGR00924 306 EMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK--GK--DPTTPLKFTLGMLFCGASFLTFAASIW----FADA-- 375 (475)
T ss_pred cccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhC--CC--CCCcHHHHHHHHHHHHHHHHHHHHHHh----hcCC--
Confidence 9889999999999999999999999999887777665 22 278899999999999999999887631 1111
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCC
Q 012167 344 LVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRH 423 (469)
Q Consensus 344 ~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~ 423 (469)
..++|+||++++|+++|+||++++|++++++++++|+++||+++|+|.+..++|+.+++.+........
T Consensus 376 ------~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~----- 444 (475)
T TIGR00924 376 ------GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ----- 444 (475)
T ss_pred ------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence 135899999999999999999999999999999999999999999999999999999999988764311
Q ss_pred CCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012167 424 TPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY 464 (469)
Q Consensus 424 ~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~ 464 (469)
+| ..+|..+++++++.+++++++.|++++
T Consensus 445 -~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~k 473 (475)
T TIGR00924 445 -GV-----------TGVFGKIGLVTLLVGVVMALMVPWLNR 473 (475)
T ss_pred -ch-----------hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12 447888888888888888888887764
No 8
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=100.00 E-value=1.9e-35 Score=312.29 Aligned_cols=361 Identities=14% Similarity=0.208 Sum_probs=264.6
Q ss_pred hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHH
Q 012167 37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIST 116 (469)
Q Consensus 37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~ 116 (469)
.+.+++++.++++|.|.++|+..++++++|+++++ +++++++++|+++|+|+++||.+++++.+++||+++|.+++
T Consensus 112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~----~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~ 187 (500)
T PRK09584 112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP----RLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV 187 (500)
T ss_pred HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch----hhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 45677889999999999999999999999987643 46678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCccccc--CCCCCCchh--HH----HHHHHHH-HhhccCCCCCccccccccCCCCCCCCcc-cccc
Q 012167 117 ATILLSIPIFLLGSPFYRNK--IPTGSPLTT--IF----KVLTAAI-FNTCKSKNSSNAVTEVHSSPTCSNESRD-EGNS 186 (469)
Q Consensus 117 v~~~i~~ii~~~~~~~~~~~--~p~~~~l~~--~~----~v~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~a~ 186 (469)
+.++++++.+++.++.+++. +|+++|... .. .+..... ...... ++ .. ....
T Consensus 188 i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~ 249 (500)
T PRK09584 188 VGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLH-NQ-----------------EIARMAL 249 (500)
T ss_pred HHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHh-cc-----------------hHHHHHH
Confidence 99999888877766655543 233333221 10 1111110 010000 00 00 0000
Q ss_pred ccCCCCCCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHH-HcccCC
Q 012167 187 NVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAA-TMNTKL 265 (469)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~-~~d~~~ 265 (469)
...... .-..+.. ..+..++ +|+++.+..+++++..++||++|.|+++.+..|+. ++|+++
T Consensus 250 ~~~~~~------~~~~~~~-----------~~~~~~~-~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~ 311 (500)
T PRK09584 250 GVVALG------IVVIFGK-----------EAFAMKG-AARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSI 311 (500)
T ss_pred HHHHHH------HHHHHHH-----------HHhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccc
Confidence 000000 0000000 0011122 56777778888889999999999999999998875 578888
Q ss_pred CCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 012167 266 GSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLV 345 (469)
Q Consensus 266 ~g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~ 345 (469)
.|+.+|+++++++|++.++++.|++++++.++.+| +++.+|+++|+++.+++++++++... .+++
T Consensus 312 ~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r-------~~~~~~~~~G~~l~~l~f~~l~~~~~----~~~~---- 376 (500)
T PRK09584 312 LGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR-------LPMPHKFAIGMVLCSGAFLVLPLGAK----FAND---- 376 (500)
T ss_pred cceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC-------CCcHHHHHHHHHHHHHHHHHHHHHHH----hcCC----
Confidence 89999999999999999999999999987666544 57889999999999999999887642 1111
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCC
Q 012167 346 NSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTP 425 (469)
Q Consensus 346 ~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~ 425 (469)
...+|++|++++|+++|+||++++|++++++++++|+++||++||+|+++.++|+.+++.+.+.+..-..
T Consensus 377 ----~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~------ 446 (500)
T PRK09584 377 ----AGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDN------ 446 (500)
T ss_pred ----CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------
Confidence 2368999999999999999999999999999999999999999999999999999999998876542000
Q ss_pred CCcCCC-CCchhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012167 426 WLFGSN-LNHYHLERFYWLMCILGGLNFLHFLFWAARYKY 464 (469)
Q Consensus 426 w~~~~~-~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~ 464 (469)
- .|. ...+.+..+|..+++++++.+++++++.++.++
T Consensus 447 ~--~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k 484 (500)
T PRK09584 447 V--TDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNR 484 (500)
T ss_pred c--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011 111235678888898888888888887777765
No 9
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.51 E-value=4.1e-12 Score=130.84 Aligned_cols=294 Identities=13% Similarity=0.106 Sum_probs=174.9
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
+.+.+++.+.+.+++.|.+.|+..+++.|.++++ +|.+++++.+...++|..+||.+++++. ++||+..|.+.
T Consensus 98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~ 170 (400)
T PRK11646 98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPH------QRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATG 170 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence 4677888889999999999999999999988754 4678999999999999999999999998 68999999998
Q ss_pred HHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCCC
Q 012167 116 TATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQ 195 (469)
Q Consensus 116 ~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~ 195 (469)
++..++..++.....+.. +++ +...+. + +
T Consensus 171 ~~~~~~~~i~~~~~~~~~---~~~-~~~~~~--------~---------------------------~------------ 199 (400)
T PRK11646 171 AVLFVLAAAFNAWLLPAY---KLS-TVRTPV--------R---------------------------E------------ 199 (400)
T ss_pred HHHHHHHHHHHHHhCCcc---ccc-ccchhh--------H---------------------------H------------
Confidence 877766554433321110 000 000000 0 0
Q ss_pred CCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCCCcccCCCCC
Q 012167 196 KPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASL 275 (469)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g~~ip~~~l 275 (469)
.++ +-..+ +++... .+....++..+.|.....+...++. ++.....+++
T Consensus 200 -------------------~~~----~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~----~~~~~~~g~l 248 (400)
T PRK11646 200 -------------------GMT----RVLRD-KRFVTY---VLTLTGYYMLAVQVMLMLPIMVNDI----AGSPSAVKWM 248 (400)
T ss_pred -------------------HHH----HHHcC-chHHHH---HHHHHHHHHHHHHHHHhhhhhHHhh----cCCchHHHHH
Confidence 000 00011 111111 1112223333333322222221111 1100011223
Q ss_pred CChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhH
Q 012167 276 PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITF 355 (469)
Q Consensus 276 ~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~ 355 (469)
.+++.+..+.......++ ..|+ .+..+++..|.++.++++...+... +.
T Consensus 249 ~~~~~~~~~~~~~~~~~~----~~~r------~~~~~~~~~~~~~~~~~~~~l~~~~---------------------~~ 297 (400)
T PRK11646 249 YAIEACLSLTLLYPIARW----SEKR------FRLEHRLMAGLLIMSLSMFPIGMVS---------------------NL 297 (400)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHh------cchhHHHHHHHHHHHHHHHHHHHhh---------------------hH
Confidence 333333333222222222 2221 2334567778777777766554431 23
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCch
Q 012167 356 LWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHY 435 (469)
Q Consensus 356 ~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~ 435 (469)
++.+...++.++++.+..|.....+.+.+|++.+|.++|++.+..++|..+|+.+.+.+.+.++.. +
T Consensus 298 ~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~-------------~ 364 (400)
T PRK11646 298 QQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKAL-------------N 364 (400)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhc-------------C
Confidence 445555677889999999999999999999999999999999999999999999999987643210 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012167 436 HLERFYWLMCILGGLNFLHFLFWAARY 462 (469)
Q Consensus 436 ~l~~~f~~la~l~l~~~l~~~~~~~~~ 462 (469)
.....|++.++++++..+.+....|+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (400)
T PRK11646 365 QPELPWMMLGIIGLITLLALYWQFSQK 391 (400)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 113356666666666666555444433
No 10
>PRK03545 putative arabinose transporter; Provisional
Probab=99.48 E-value=1.2e-11 Score=126.68 Aligned_cols=283 Identities=11% Similarity=0.069 Sum_probs=170.0
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
+.+.+++++.+.+++.+.+.|...+++.|+++++ +|.++++++..+.++|.+++|.+++++.+++||++.|.+.
T Consensus 96 ~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~ 169 (390)
T PRK03545 96 NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAG------KKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAI 169 (390)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh------hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHH
Confidence 4677888889999999999999999999999864 4678899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCCC
Q 012167 116 TATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQ 195 (469)
Q Consensus 116 ~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~ 195 (469)
++..++..+......++ +|++++- . . + +
T Consensus 170 ~~~~~l~~~~~~~~~~~----~~~~~~~-~-~-------~---------------------------~------------ 197 (390)
T PRK03545 170 GGGALITLLLLIKLLPL----LPSEHSG-S-L-------K---------------------------S------------ 197 (390)
T ss_pred HHHHHHHHHHHHHhCCC----CCCCCcc-h-H-------H---------------------------H------------
Confidence 87766555443322111 1110000 0 0 0 0
Q ss_pred CCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCCCcccCC---
Q 012167 196 KPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPP--- 272 (469)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g~~ip~--- 272 (469)
..++-..+.+... +.........+....+....+.. + ..+ .++
T Consensus 198 -------------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~--~-~~g---~s~~~~ 243 (390)
T PRK03545 198 -------------------------LPLLFRRPALVSL---YLLTVVVVTAHFTAYSYIEPFVQ--Q-VAG---LSENFA 243 (390)
T ss_pred -------------------------HHHHHhCcHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--H-hcC---CCccHH
Confidence 0000000111111 11111111111111111111111 1 111 122
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+.+.....+..++..++.+++ .+| .. .+++.++..+.++++...... .
T Consensus 244 ~~~~~~~~~~~~~g~~~~g~l----~dr-------~~-~~~~~~~~~~~~~~~~~l~~~--------------------~ 291 (390)
T PRK03545 244 TLLLLLFGGAGIIGSVLFSRL----GNR-------HP-SGFLLIAIALLLVCLLLLLPA--------------------A 291 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hhc-------cc-hhHHHHHHHHHHHHHHHHHHH--------------------h
Confidence 222333333434444444443 233 11 234556666555554433221 1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 432 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~ 432 (469)
.+.++++...++.+++.....+...+.+.+.+|+ .++.++|++.....+|..+|+.+.+.+.+..
T Consensus 292 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~-------------- 356 (390)
T PRK03545 292 NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-ATDVAMALFSGIFNIGIGAGALLGNQVSLHL-------------- 356 (390)
T ss_pred chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------
Confidence 2455666778899999988888888888888875 7899999999989999999999998876421
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012167 433 NHYHLERFYWLMCILGGLNFLHFLFWAA 460 (469)
Q Consensus 433 n~~~l~~~f~~la~l~l~~~l~~~~~~~ 460 (469)
++...|+..+++.++++++++...|
T Consensus 357 ---g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 357 ---GLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred ---ChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 2345677778888777777666554
No 11
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.47 E-value=2.4e-11 Score=124.79 Aligned_cols=302 Identities=12% Similarity=0.048 Sum_probs=170.5
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
+.+.+++...+.+++.|...|...+.+.|.++++ +|.+++++++.+.++|.++++.+++.+.+..+|+..|.+.
T Consensus 102 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 175 (406)
T PRK11551 102 DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPR------LRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVG 175 (406)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence 4677888899999999999999999999999754 4678899999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCCC
Q 012167 116 TATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQ 195 (469)
Q Consensus 116 ~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~ 195 (469)
++..++..++.....+ ++|+... ++. . . . ++
T Consensus 176 ~~~~~~~~~~~~~~l~----~~~~~~~-------------~~~-~--~-------------~-----~~----------- 206 (406)
T PRK11551 176 GVGPLLLVPLLMRWLP----ESRAFAQ-------------AAG-A--G-------------K-----QR----------- 206 (406)
T ss_pred HHHHHHHHHHHHHhCC----CChhHHh-------------ccC-c--c-------------h-----hh-----------
Confidence 7766555443332111 1111000 000 0 0 0 00
Q ss_pred CCchhHHHHhhhccCCCCCCcc-ccCchhhHHHHHHHHHHH-HHHhhHHHHHhhhcchhHHHHHHHHcccCCCCcccCCC
Q 012167 196 KPTEDIKFLNRALRNNPAYPIV-QCTVKEVEEVKIVVKIFP-IFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPA 273 (469)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~k~~~~~l~-l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g~~ip~~ 273 (469)
...++ .++. ...++...+.. .+.....++....+ .+....+ .... .-..+
T Consensus 207 -----------------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~~~~--~g~s--~~~~~ 258 (406)
T PRK11551 207 -----------------APVLRALFGE---GRATATLLLWISYFFTLIVLYFLLNW----LPSLLVG--QGLS--RSQAG 258 (406)
T ss_pred -----------------hhhHHHHhhh---hhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHh--CCCC--hhhhh
Confidence 00000 0000 00111111111 11111222221111 1111111 1100 00123
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 012167 274 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI 353 (469)
Q Consensus 274 ~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ 353 (469)
.+.....+..++..++..++.+++.+| +.+..+.+..+++++..... .
T Consensus 259 ~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~~~---------------------~ 306 (406)
T PRK11551 259 LVQIAFNIGGALGSLLIGALMDRLRPR-----------RVVLLIYAGILASLAALAAA---------------------P 306 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHhc---------------------C
Confidence 333444444455555555554433221 22333444444443332221 1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCC
Q 012167 354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN 433 (469)
Q Consensus 354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n 433 (469)
+.+++....++.+++.....+...+++.+..|++.||..+|+......+|..+++.+.+.+.+..+
T Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~-------------- 372 (406)
T PRK11551 307 SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGR-------------- 372 (406)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCC--------------
Confidence 344555566778887777778888999999999999999999999999999999999888764211
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccccccCC
Q 012167 434 HYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 468 (469)
Q Consensus 434 ~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~~~~~ 468 (469)
....+++..+...++.+++.+...++-+.++++
T Consensus 373 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (406)
T PRK11551 373 --STVGVIGASIPVILVAALAALLLVSRPSRADPC 405 (406)
T ss_pred --chHHHHHHHHHHHHHHHHHHHHHhcchhccCCC
Confidence 113345555555555555555555555555544
No 12
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.47 E-value=2e-11 Score=126.04 Aligned_cols=295 Identities=10% Similarity=-0.017 Sum_probs=170.1
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
+.+.+++..++.+++.|...|+..+++.|.++++ ++.++.++++.+.++|..+|+.+++++.+..+|++.|.+.
T Consensus 109 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~ 182 (417)
T PRK10489 109 SLLAIYLLGLWDGFFGSLGVTALLAATPALVGRE------NLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLA 182 (417)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHH------HHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHH
Confidence 3566777788888888888899999999888753 3567888899999999999999999999888999999988
Q ss_pred HHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCCC
Q 012167 116 TATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQ 195 (469)
Q Consensus 116 ~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~ 195 (469)
++..+++.+...... +.+|+..+..+ + .. +
T Consensus 183 ~~~~~~~~~~~~~l~----~~~~~~~~~~~-----------------~------------------~~--------~--- 212 (417)
T PRK10489 183 AAGTFITLLPLLRLP----ALPPPPQPREH-----------------P------------------LR--------S--- 212 (417)
T ss_pred HHHHHHHHHHHHhCC----CCCCCCccccc-----------------c------------------hH--------H---
Confidence 877766554433211 11111000000 0 00 0
Q ss_pred CCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCCCcccC---C
Q 012167 196 KPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVP---P 272 (469)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g~~ip---~ 272 (469)
. ...+ ..+...+. ++. +++..... .......+.++....+ ..+ .+ .
T Consensus 213 -----~-----------~~~~-----~~~~~~~~-~~~--~~~~~~~~-~~~~~~~~~~p~~~~~---~~g---~~~~~~ 261 (417)
T PRK10489 213 -----L-----------LAGF-----RFLLASPV-VGG--IALLGGLL-TMASAVRVLYPALADE---VWQ---MGAAQI 261 (417)
T ss_pred -----H-----------HHHH-----HHHHcChH-HHH--HHHHHHHH-HHHHhHHHhhHHHHHh---ccC---CChhHh
Confidence 0 0000 00000011 111 11111111 1111222222222111 111 12 2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.+...+..++..++.+++ .+| .+..+-+..+.++.+++++..++.
T Consensus 262 g~~~~~~~~g~~ig~~~~~~l----~~~-------~~~~~~l~~~~~~~~~~~~~~~~~--------------------- 309 (417)
T PRK10489 262 GLLYAAVPLGAALGALTSGWL----AHS-------ARPGLLMLLSTLGSFLAVGLFGLM--------------------- 309 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----hhc-------cCcchHHHHHHHHHHHHHHHHHcc---------------------
Confidence 333344444444444444433 222 122233556666666665544322
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 432 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~ 432 (469)
.+++......++.+++.....+....++.+..|++.||.++|++.....+|..+|+.+.+.+.+..+
T Consensus 310 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g------------- 376 (417)
T PRK10489 310 PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT------------- 376 (417)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-------------
Confidence 1344455667788888888888888999999999999999999999999999999999988765221
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 012167 433 NHYHLERFYWLMCILGGLNFLHFLFWAARYKYSS 466 (469)
Q Consensus 433 n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~~~ 466 (469)
....++..+++.++..++.....++++.++
T Consensus 377 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (417)
T PRK10489 377 ----PVASASASGFGLLIIGVLLLLVLGELRRFR 406 (417)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 123455556555555555555556655444
No 13
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.46 E-value=8.2e-12 Score=128.05 Aligned_cols=302 Identities=13% Similarity=0.106 Sum_probs=173.6
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
+.+.++++..+.+++.+ +.|...+.+.|+++++ +|.++.++++.+.++|.++++.+++++.+..+|+..|.+.
T Consensus 106 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 178 (408)
T PRK09874 106 NIWQFLILRALLGLLGG-FVPNANALIATQVPRN------KSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFIT 178 (408)
T ss_pred hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 36677788888888765 4577778888887643 3567888899999999999999999999989999999998
Q ss_pred HHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCCC
Q 012167 116 TATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQ 195 (469)
Q Consensus 116 ~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~ 195 (469)
++..++..+......+.- .+++.++-..-. + +
T Consensus 179 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------~---------------------------~------------ 210 (408)
T PRK09874 179 ASVLFLCFLVTLFCIREN--FQPVSKKEMLHM-------R---------------------------E------------ 210 (408)
T ss_pred HHHHHHHHHHHHHHhccC--cccccchhhhHH-------H---------------------------H------------
Confidence 887766655433211110 001100000000 0 0
Q ss_pred CCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCCCcccCCCCC
Q 012167 196 KPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASL 275 (469)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g~~ip~~~l 275 (469)
.++ ..++.+ .. +.+......+........+.+..+..+...+......-.+.+
T Consensus 211 -------------------~~~-----~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 263 (408)
T PRK09874 211 -------------------VVT-----SLKNPK-LV--LSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMI 263 (408)
T ss_pred -------------------HHH-----hCcCCc-hH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 000 000011 11 111111222222222222222222111111100000001122
Q ss_pred CChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhH
Q 012167 276 PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITF 355 (469)
Q Consensus 276 ~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~ 355 (469)
..+..+..++..|+.+++.+ |. ...+-+.+++++.+++++..+.. .+.
T Consensus 264 ~~~~~l~~~~~~~~~g~l~d----r~-------g~~~~~~~~~~~~~~~~~~~~~~---------------------~~~ 311 (408)
T PRK09874 264 ASVPGVAALLSAPRLGKLGD----RI-------GPEKILITALIFSVLLLIPMSFV---------------------QTP 311 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHh----cc-------ccchhHHHHHHHHHHHHHHHHHh---------------------ccH
Confidence 22333444445555555433 31 21223445555555544443322 124
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCch
Q 012167 356 LWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHY 435 (469)
Q Consensus 356 ~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~ 435 (469)
+++....++.++++....|.....+.+.+|++.+|.++|++.....+|..+|+.+++.+.+..
T Consensus 312 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~----------------- 374 (408)
T PRK09874 312 LQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY----------------- 374 (408)
T ss_pred HHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc-----------------
Confidence 445566688899999999999999999999999999999999999999999999998876421
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccCC
Q 012167 436 HLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 468 (469)
Q Consensus 436 ~l~~~f~~la~l~l~~~l~~~~~~~~~~~~~~~ 468 (469)
.+...|.+.+++++++.+..+...||.+.++..
T Consensus 375 g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~ 407 (408)
T PRK09874 375 GFRAVFLVTAGVVLFNAVYSWNSLRRRRIPQVS 407 (408)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 134567888888888877776666666555443
No 14
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.45 E-value=4.1e-11 Score=120.90 Aligned_cols=86 Identities=17% Similarity=0.246 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
+.+.+++++.+.++|.|...|...+++.|.++++ +|.+.++++..+.++|.++++.+++++.++.+|++.|.+.
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 154 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPAS------ERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE 154 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHH------HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 4778889999999999999999999999998754 4678899999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHH
Q 012167 116 TATILLSIPIFL 127 (469)
Q Consensus 116 ~v~~~i~~ii~~ 127 (469)
++..++..+...
T Consensus 155 ~~~~~~~~~~~~ 166 (399)
T TIGR00893 155 GVLGIIWGVLWL 166 (399)
T ss_pred HHHHHHHHHHhh
Confidence 877665554443
No 15
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.42 E-value=5.9e-11 Score=121.33 Aligned_cols=278 Identities=13% Similarity=0.044 Sum_probs=170.1
Q ss_pred chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHH
Q 012167 35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGI 114 (469)
Q Consensus 35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i 114 (469)
.+.+.+++...+.+.+.+...|...++..+ +.+ ++...++....+.++|..++|.+++++.+++||+..|.+
T Consensus 92 ~~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~~~-------~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~ 163 (382)
T TIGR00902 92 HNAWLLFIAIGLFALFFSAGMPIGDALANT-WQK-------QFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAI 163 (382)
T ss_pred hhHHHHHHHHHHHHHHHccchhHHHHHHHH-HHH-------HcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 347778888888888888888888777543 221 345678999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCC
Q 012167 115 STATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPS 194 (469)
Q Consensus 115 ~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~ 194 (469)
.++...+.++.+.. .+. .+|+++. . . . +
T Consensus 164 ~~~~~~~~~~~~~~-~~~---~~~~~~~-~---------------~--~----------------------------~-- 191 (382)
T TIGR00902 164 LTAGLAFMLIGFLI-KPT---IPPKDAI-P---------------E--D----------------------------E-- 191 (382)
T ss_pred HHHHHHHHHHHHHc-CCC---CCCCccc-c---------------c--c----------------------------c--
Confidence 66554333332221 110 0111000 0 0 0 0
Q ss_pred CCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCCCcccCC--
Q 012167 195 QKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPP-- 272 (469)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g~~ip~-- 272 (469)
.... ++..+..+-.++..+.+...+++..+.+..+..+.+-++. + .++
T Consensus 192 ------------------~~~~-----~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~----g---~s~~~ 241 (382)
T TIGR00902 192 ------------------SQGD-----SAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAA----G---ISASA 241 (382)
T ss_pred ------------------cccc-----hhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----C---CCHhH
Confidence 0000 0000000001122223333444455555544433322221 2 222
Q ss_pred -CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167 273 -ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL 351 (469)
Q Consensus 273 -~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~ 351 (469)
+.+..+..+..++..++.+ ++.+| .++.+-+.+|.++.++.++..++.
T Consensus 242 ~g~l~~~~~~~~i~~~~~~~----~l~~r-------~g~~~~l~~~~~~~~~~~~~~~~~-------------------- 290 (382)
T TIGR00902 242 TGLLWGIGVLAEIIIFAFSN----KLFQN-------CSARDLLLISAIACVGRWAIIGAI-------------------- 290 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhH----HHHhh-------CCHHHHHHHHHHHHHHHHHHHHhH--------------------
Confidence 2333334444444433333 33444 455555778888888888776654
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHH-HHHHHHHHHHHHhHhhhccccccCCCCCCCcCC
Q 012167 352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSW-ASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGS 430 (469)
Q Consensus 352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~-l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~ 430 (469)
.++++++...+++++...+..+....++.+. |++.++..+|++. +..++|..+++.+++.+.+..
T Consensus 291 -~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~------------ 356 (382)
T TIGR00902 291 -EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL------------ 356 (382)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------
Confidence 2456666667999999999999999999998 9999999999986 567899999999999887521
Q ss_pred CCCchhHHHHHHHHHHHHHHHHH
Q 012167 431 NLNHYHLERFYWLMCILGGLNFL 453 (469)
Q Consensus 431 ~~n~~~l~~~f~~la~l~l~~~l 453 (469)
+ ...|+..+++++++.+
T Consensus 357 ----g--~~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 357 ----G--AGTFVFMAIIAAAAFF 373 (382)
T ss_pred ----c--HHHHHHHHHHHHHHHH
Confidence 1 2357777887776543
No 16
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.42 E-value=3.4e-11 Score=120.78 Aligned_cols=268 Identities=9% Similarity=0.034 Sum_probs=162.6
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
+.+.+++++.+.+++.+...|...+++.|.++++ +|.+.++++..+.++|.++++.+++++.+..||+..|.+.
T Consensus 91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 164 (365)
T TIGR00900 91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE------QLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD 164 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5788899999999999999999999999999864 4778999999999999999999999999989999999988
Q ss_pred HHHHHHHHHHHHhcCCcccccCC-CCCCch-hHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCC
Q 012167 116 TATILLSIPIFLLGSPFYRNKIP-TGSPLT-TIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVP 193 (469)
Q Consensus 116 ~v~~~i~~ii~~~~~~~~~~~~p-~~~~l~-~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~ 193 (469)
++..+++.+.....+.. ++++ ++++.. +.. + +
T Consensus 165 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--------~--------------------------~---------- 198 (365)
T TIGR00900 165 AVGFAISALLIVSVRIP--ELAASEIQALSNAVL--------R--------------------------D---------- 198 (365)
T ss_pred HHHHHHHHHHHHhcccc--cCCCccccccchhHH--------H--------------------------H----------
Confidence 87776665443332110 0000 000000 000 0 0
Q ss_pred CCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcch-hHHHHHHHH-cccCCCCcccC
Q 012167 194 SQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLS-TFSVQQAAT-MNTKLGSLKVP 271 (469)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~-s~~~~qa~~-~d~~~~g~~ip 271 (469)
. .+..++.++-..+..+.....+++..+.... +..+....+ .+.+ ...
T Consensus 199 ---------------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 248 (365)
T TIGR00900 199 ---------------------T-----REGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRG----STH 248 (365)
T ss_pred ---------------------H-----HhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCc----hHH
Confidence 0 0000000000011122222222222222221 112222111 1111 011
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167 272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL 351 (469)
Q Consensus 272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~ 351 (469)
.+.+.....+..++..++..++ .+|. ...+-+..+.++.++++....+..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~------------------- 298 (365)
T TIGR00900 249 YGWVLAAFGLGALLGALLLGLL----GRYF-------KRMALMTGAIFVIGLAILVVGLTP------------------- 298 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHh-------chhHHHHHHHHHHHHHHHHHHhhc-------------------
Confidence 2333344444444444454433 2331 112234445555666555544331
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
+ +.++.+...++.+++.....+...+++.+..|++.||.++|++.....+|..+++.+++.+.+
T Consensus 299 ~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 299 P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 355667778999999999999999999999999999999999999999999999998887653
No 17
>PRK10054 putative transporter; Provisional
Probab=99.41 E-value=1.6e-11 Score=126.14 Aligned_cols=82 Identities=9% Similarity=0.089 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHH
Q 012167 37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIST 116 (469)
Q Consensus 37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~ 116 (469)
.+.+++...+.+.+.+.+.|...+...|.++++ +|.+++++.|...|+|.+++|.+++++.+ .+|+..|.+.+
T Consensus 96 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~ 168 (395)
T PRK10054 96 VTLVVLFFALINCAYSVFSTVLKAWFADNLSST------SKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAA 168 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHH
Confidence 445555566667777778888888888888753 46789999999999999999999999885 79999999988
Q ss_pred HHHHHHHHH
Q 012167 117 ATILLSIPI 125 (469)
Q Consensus 117 v~~~i~~ii 125 (469)
+..+++++.
T Consensus 169 ~~~~i~~i~ 177 (395)
T PRK10054 169 ICSAFPLVF 177 (395)
T ss_pred HHHHHHHHH
Confidence 877776544
No 18
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.41 E-value=1.6e-10 Score=118.43 Aligned_cols=280 Identities=11% Similarity=0.056 Sum_probs=166.8
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
+...+++.+.+.++|.+...|+..+.+.|+++++ +|.++++++..+.++|..+|+.+++++.+.+||+..|.+.
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 184 (399)
T PRK05122 111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGAL------HTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLI 184 (399)
T ss_pred HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChh------hhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4567888889999999999999999999998754 3567888899999999999999999999999999988876
Q ss_pred HHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCCC
Q 012167 116 TATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQ 195 (469)
Q Consensus 116 ~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~ 195 (469)
++..++..+ +.++ .|+.++-. . +
T Consensus 185 ~~~~~~~~~---~~~~-----~~~~~~~~------------------~-------------------~------------ 207 (399)
T PRK05122 185 MLLALLGLL---LARP-----RPAVPPVK------------------G-------------------E------------ 207 (399)
T ss_pred HHHHHHHHH---HHhc-----CCCCCCCC------------------c-------------------c------------
Confidence 654433222 2111 11110000 0 0
Q ss_pred CCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCCCcccCCCCC
Q 012167 196 KPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASL 275 (469)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g~~ip~~~l 275 (469)
..++ .+..|+.......+ .++...+....+....... +.+ .. ..+..
T Consensus 208 -----------------~~~~-------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~---~~-~~~~~ 254 (399)
T PRK05122 208 -----------------RLPF-------RRVLGRVWPYGMGL---ALASIGFGTIATFITLYYA--ARG---WD-GAALA 254 (399)
T ss_pred -----------------chhH-------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH--Hcc---cc-cchHH
Confidence 0000 01112211111111 1111122222222222111 111 10 11222
Q ss_pred CChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhH
Q 012167 276 PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITF 355 (469)
Q Consensus 276 ~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~ 355 (469)
.....+..++..++.+++ .+| .+..+.+..+.++.++++...+.. .+.
T Consensus 255 ~~~~~~~~~~~~~~~g~l----~~r-------~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~ 302 (399)
T PRK05122 255 LTLFGVAFVGARLLFGNL----INR-------LGGLRVAIVSLLVEILGLLLLWLA---------------------PSP 302 (399)
T ss_pred HHHHHHHHHHHHHHHHHH----HHH-------hccHHHHHHHHHHHHHHHHHHHHh---------------------ccH
Confidence 233333444444444444 333 222334556667667666555443 134
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCch
Q 012167 356 LWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHY 435 (469)
Q Consensus 356 ~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~ 435 (469)
++++...++.+++.....|.....+.+..|++.||.++|++.....+|..+++.+.+.+.+..
T Consensus 303 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------------- 365 (399)
T PRK05122 303 WMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF----------------- 365 (399)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------------
Confidence 456667889999998888888888889999999999999999999999988888877765421
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh
Q 012167 436 HLERFYWLMCILGGLNFLHFLFWAA 460 (469)
Q Consensus 436 ~l~~~f~~la~l~l~~~l~~~~~~~ 460 (469)
++...|++.++++++..++.+.+.+
T Consensus 366 g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 366 GYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1345667777777766655554433
No 19
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.39 E-value=2.5e-10 Score=117.39 Aligned_cols=85 Identities=12% Similarity=0.001 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
+.+.+++...+.+++.+...|...+.+.|.++++ ++.+..++.+...++|..++|.+++++.++.+|+..|.+.
T Consensus 100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~ 173 (406)
T PRK15402 100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEA------DAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLF 173 (406)
T ss_pred cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence 3567788888899999988888889999998754 3456778888888899999999999999989999999988
Q ss_pred HHHHHHHHHHH
Q 012167 116 TATILLSIPIF 126 (469)
Q Consensus 116 ~v~~~i~~ii~ 126 (469)
++..+++.+..
T Consensus 174 ~~~~~~~~~~~ 184 (406)
T PRK15402 174 AALAALSFFGL 184 (406)
T ss_pred HHHHHHHHHHH
Confidence 87776665543
No 20
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.38 E-value=1.1e-10 Score=119.24 Aligned_cols=262 Identities=13% Similarity=0.042 Sum_probs=154.4
Q ss_pred chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHH
Q 012167 35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGI 114 (469)
Q Consensus 35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i 114 (469)
.+.+.+++.+.+.+++.+...|...++..|.. + ++.+.++......++|..+||.+++++.+++||+..|.+
T Consensus 92 ~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~-~-------~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~ 163 (382)
T PRK11128 92 HSFWLLFVAIGLFNLFFSPLVPLTDALANTWQ-K-------QIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWI 163 (382)
T ss_pred ccHHHHHHHHHHHHHHHcccccHHHHHHHHHH-h-------hccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 34677778888889999999998888877752 1 244567778888899999999999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCC
Q 012167 115 STATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPS 194 (469)
Q Consensus 115 ~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~ 194 (469)
.++..++..+.... .+ +.+|++++- + + . . + .
T Consensus 164 ~~~~~~~~~~~~~~-~~---~~~~~~~~~------------~---~--~--------------~----~--------~-- 194 (382)
T PRK11128 164 LTAGVASMLLGQLL-RP---TIMPQGESR------------Q---Q--E--------------S----A--------G-- 194 (382)
T ss_pred HHHHHHHHHHHHHc-cC---CCCCccccc------------c---c--c--------------c----c--------c--
Confidence 77655544433222 11 111111000 0 0 0 0 0 0
Q ss_pred CCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCCCcccCCCC
Q 012167 195 QKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPAS 274 (469)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g~~ip~~~ 274 (469)
...+ .+.-..|++ +.+.+...+.+..+.+..+......++...+ +-..+.
T Consensus 195 ------------------~~~~-----~~i~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s----~~~~g~ 244 (382)
T PRK11128 195 ------------------WPAW-----KALLKEPTV---WRFLLCVSLLQGSHAAYYGFSAIYWQAAGYS----ASTIGY 244 (382)
T ss_pred ------------------cchH-----HHHHcChhH---HHHHHHHHHHHHHhHhHHHHHHHHHHHCCCC----HhHHHH
Confidence 0000 000001122 2222222333333333333333222221111 011233
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchh
Q 012167 275 LPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPIT 354 (469)
Q Consensus 275 l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s 354 (469)
+..++.+..++...+.+++ .+| .+..+.+.+++++.+++++..+.. .+
T Consensus 245 ~~~~~~~~~~~~~~~~g~l----~~r-------~~~~~~l~~~~~~~~~~~~~~~~~---------------------~~ 292 (382)
T PRK11128 245 LWSLGVVAEVLIFAFSNRL----FRR-------WSARDLLLLSAICGVVRWGLMGST---------------------TA 292 (382)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHH-------CCHHHHHHHHHHHHHHHHHHHHhh---------------------hh
Confidence 4445555555554555544 344 333445777777777776655443 24
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHH-HHHHHHHHHHHHhHhhhcc
Q 012167 355 FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSW-ASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 355 ~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~-l~~~iG~~l~~~l~~~~~~ 416 (469)
.+++++..+++++++.+..+....++.++. ++.++.++++.. +..++|..+++.+++.+.+
T Consensus 293 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~ 354 (382)
T PRK11128 293 LPWLIVIQILHCGTFTVCHLAAMRYIAARP-GSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ 354 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777889999999999999999998875 555688899886 5567888888888888765
No 21
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.35 E-value=1.2e-10 Score=115.62 Aligned_cols=263 Identities=18% Similarity=0.228 Sum_probs=180.7
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
+.+.++++..+.+++.+...|...++..|.++++ +|...+++.+.+.++|..+++.+++++.++.+|+..|.+.
T Consensus 86 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 159 (352)
T cd06174 86 SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLIL 159 (352)
T ss_pred cHHHHHHHHHHHHcccccccHhHHHHHHHhCCcc------chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4677888999999999999999999999999874 3678899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCCC
Q 012167 116 TATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQ 195 (469)
Q Consensus 116 ~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~ 195 (469)
++..+++.+...+.. +..
T Consensus 160 ~~~~~~~~~~~~~~~-------------~~~------------------------------------------------- 177 (352)
T cd06174 160 AILGLLLALLLLFLL-------------RLL------------------------------------------------- 177 (352)
T ss_pred HHHHHHHHHHHHHHH-------------HHH-------------------------------------------------
Confidence 888777665543311 000
Q ss_pred CCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCCCcccCCCCC
Q 012167 196 KPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASL 275 (469)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g~~ip~~~l 275 (469)
..+.+....+...+............+. .+.. +...+.+
T Consensus 178 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~ 216 (352)
T cd06174 178 --------------------------------------LLLALAFFLLSFGYYGLLTYLPLYLQEV-LGLS--AAEAGLL 216 (352)
T ss_pred --------------------------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCC--HHHHHHH
Confidence 0000111111111111111111111110 0100 1123445
Q ss_pred CChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchh
Q 012167 276 PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQ-RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPIT 354 (469)
Q Consensus 276 ~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~-ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s 354 (469)
.....+..++..++..++.++..+| + .+.++.++..++++.....+ +
T Consensus 217 ~~~~~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~i~~~~~~~~~---------------------~ 264 (352)
T cd06174 217 LSLFGLGGILGALLGGLLSDRLGRR-----------RLLLLIGLLLAALGLLLLALAP---------------------S 264 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHHHHHHhc---------------------c
Confidence 5666666667777776665443322 2 46677777777777665431 3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCc
Q 012167 355 FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNH 434 (469)
Q Consensus 355 ~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~ 434 (469)
.++.....++.++++....+...+.+.+..|++.|+..+|++.....+|..+++.+.+.+.+.. +|
T Consensus 265 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~------~~-------- 330 (352)
T cd06174 265 LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG------GY-------- 330 (352)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Cc--------
Confidence 5677888999999999999999999999999999999999999999999999999998876411 12
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 012167 435 YHLERFYWLMCILGGLNFLHFL 456 (469)
Q Consensus 435 ~~l~~~f~~la~l~l~~~l~~~ 456 (469)
...|.+.++++++..+++.
T Consensus 331 ---~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 331 ---GGVFLILAALALLAALLLL 349 (352)
T ss_pred ---chHHHHHHHHHHHHHHHhe
Confidence 3456667777766665543
No 22
>PRK12382 putative transporter; Provisional
Probab=99.35 E-value=3.1e-10 Score=116.08 Aligned_cols=278 Identities=10% Similarity=0.046 Sum_probs=165.1
Q ss_pred chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHH
Q 012167 35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGI 114 (469)
Q Consensus 35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i 114 (469)
.+.+.+++++.+.++|.+...|...+.+.|.++++ +|.++++++..+.++|.++++.+++++.+.+||+..+.+
T Consensus 110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~ 183 (392)
T PRK12382 110 FKFALLVVGRLILGFGESQLLTGALTWGLGLVGPK------HSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALT 183 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc------ccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 34677889999999999999999889999988754 367789999999999999999999999998999887765
Q ss_pred HHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCC
Q 012167 115 STATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPS 194 (469)
Q Consensus 115 ~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~ 194 (469)
..+..++. +.+.+ +.++.+++++. +
T Consensus 184 ~~~~~~~~---~~~~~-~~~~~~~~~~~-----------------~---------------------------------- 208 (392)
T PRK12382 184 TMVLPLLA---WAFNG-TVRKVPAHAGE-----------------R---------------------------------- 208 (392)
T ss_pred HHHHHHHH---HHHHH-hccCCCCCccc-----------------C----------------------------------
Confidence 44433222 22211 11110010000 0
Q ss_pred CCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHH-HHHHHhhHHHHHhhhcchhHHHHHHHHcccCCCCcccCCC
Q 012167 195 QKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKI-FPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPA 273 (469)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~-l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g~~ip~~ 273 (469)
. .. .+..|.+.+. +.+.+....+..... ....... +.. +. +.+
T Consensus 209 ------------------~-~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~--~~~---~~-~~~ 252 (392)
T PRK12382 209 ------------------P-SL-------WSVVGLIWKPGLGLALQGVGFAVIGT----FVSLYFA--SKG---WA-MAG 252 (392)
T ss_pred ------------------c-hH-------HHHHHHHHHhHHHHHHHHHHHhHHHH----HHHHHHH--hcC---Cc-hhH
Confidence 0 00 0001111110 001111111111111 1111111 111 10 112
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 012167 274 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI 353 (469)
Q Consensus 274 ~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ 353 (469)
.......+..++..++.+++. +|. ...+.+.++.++.+++++...+. .
T Consensus 253 ~~~~~~~~~~~~~~~~~g~l~----~r~-------g~~~~~~~~~~~~~~~~~~~~~~---------------------~ 300 (392)
T PRK12382 253 FTLTAFGGAFVLMRVLFGWMP----DRF-------GGVKVAIVSLLVETVGLLLLWLA---------------------P 300 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----Hhc-------CCCeehHHHHHHHHHHHHHHHHc---------------------c
Confidence 222233333444455555543 332 22233556777777776654432 1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCC
Q 012167 354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN 433 (469)
Q Consensus 354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n 433 (469)
+.++.+...++.++++....|.....+.+.+|++.||.++|+++....+|+.+++.+.+.+.+.. +|
T Consensus 301 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~------g~------- 367 (392)
T PRK12382 301 TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF------GY------- 367 (392)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------Cc-------
Confidence 34455667788999998888888888899999999999999999999999999999988876521 12
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q 012167 434 HYHLERFYWLMCILGGLNFLHFLFW 458 (469)
Q Consensus 434 ~~~l~~~f~~la~l~l~~~l~~~~~ 458 (469)
...|.+.+++.++..++.+..
T Consensus 368 ----~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 368 ----PSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred ----hHHHHHHHHHHHHHHHHHHhh
Confidence 446777777777766655544
No 23
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.32 E-value=4.3e-10 Score=117.95 Aligned_cols=83 Identities=13% Similarity=0.133 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccC-CcchhHHHH
Q 012167 37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK-GWQWGFGIS 115 (469)
Q Consensus 37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~-g~~~~F~i~ 115 (469)
...+++..++.+++.|...|...+.+.++++++ +|.++.++++.+.++|.++++.+++++.+.. ||+..|.+.
T Consensus 131 ~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~ 204 (465)
T TIGR00894 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPK------ERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVF 204 (465)
T ss_pred chHHHHHHHHHHHhcccchhhHHHHHHhcCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhh
Confidence 566888899999999999999999999999864 4678999999999999999999999999884 999999998
Q ss_pred HHHHHHHHHH
Q 012167 116 TATILLSIPI 125 (469)
Q Consensus 116 ~v~~~i~~ii 125 (469)
++..++..++
T Consensus 205 ~~~~~~~~~~ 214 (465)
T TIGR00894 205 GIVGCAWSLL 214 (465)
T ss_pred hHHHHHHHHH
Confidence 8876554443
No 24
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.31 E-value=4.7e-11 Score=119.22 Aligned_cols=267 Identities=14% Similarity=0.196 Sum_probs=159.5
Q ss_pred hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHH
Q 012167 37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIST 116 (469)
Q Consensus 37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~ 116 (469)
.+.++++..+.++|.+...|...+++.|.++++ +|.+.+++.+.+.++|.++++.+++++.++++|++.|.+.+
T Consensus 85 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~ 158 (352)
T PF07690_consen 85 FWLLLIARFLLGIGSGFFSPASNALIADWFPPE------ERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISA 158 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHH
T ss_pred HHHHhhhccccccccccccccccccccccchhh------hhhhccccccchhhhhhhcccchhhhhhhcccccccccccc
Confidence 458899999999999999999999999999985 36789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCCCC
Q 012167 117 ATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQK 196 (469)
Q Consensus 117 v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~ 196 (469)
+..++..++.....+ +++++.... . + .+ ++..
T Consensus 159 ~~~~~~~il~~~~~~---~~~~~~~~~----------------~--~-------------~~----~~~~---------- 190 (352)
T PF07690_consen 159 ILSLIAAILFILFLP---EPPPPRERE----------------S--P-------------KE----SESK---------- 190 (352)
T ss_dssp HHHHHHHHHHHCCC------STTTT------------------S--S-------------TT----TT------------
T ss_pred chhhhhhhhHhhhhh---hcccccccc----------------c--c-------------cc----cccc----------
Confidence 988887764333221 111110000 0 0 00 0000
Q ss_pred CchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHH-HHHcccCCCCcccCCCCC
Q 012167 197 PTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQ-AATMNTKLGSLKVPPASL 275 (469)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~q-a~~~d~~~~g~~ip~~~l 275 (469)
...+++. ..+.....+.+. .+++....+...+....+..+.. .+..+.+ +. ...+.+
T Consensus 191 ---------------~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~-~~~~~~ 248 (352)
T PF07690_consen 191 ---------------KPKPLKP-GFKSLFKNPVLW---ILLIAFFLFFFVFSGFSFFLPLYLQEVLGFS--GP-SQAGLL 248 (352)
T ss_dssp ---------------HHHCCCH--CTHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC--TH-HHHHHH
T ss_pred ---------------ccccccc-ccccccccchhh---hhhhhhhHHHHHHHHhhcccchhhhhccCCC--HH-HHHHHH
Confidence 0000000 000111111111 12222233333333332222221 1111111 00 111223
Q ss_pred CChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhH
Q 012167 276 PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITF 355 (469)
Q Consensus 276 ~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~ 355 (469)
..+..+..++..++.+++. +| .+..++..+......++.+...+.. ...+.
T Consensus 249 ~~~~~~~~~~~~~~~~~l~----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~ 299 (352)
T PF07690_consen 249 FSIFGIVGIIGSLLAGRLS----DR-------FGRRRRLLIAILLLILGALGLLLLP------------------FSSSP 299 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HH-------TTCHHHHHHHHHHHHHHHHHHCCSH------------------HHCHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HH-------cCcHHHHHHHHHHHHHHHHHHHHHH------------------HhhhH
Confidence 3444444444555555554 33 2223344444444444443333221 01245
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHH
Q 012167 356 LWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFST 408 (469)
Q Consensus 356 ~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~ 408 (469)
.|.+...++.+++..+..+...+++.+.+|++.+|.++|+.....++|..++|
T Consensus 300 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 300 VWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 67777889999999999999999999999999999999999999999999876
No 25
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.31 E-value=1.7e-10 Score=134.18 Aligned_cols=287 Identities=9% Similarity=-0.047 Sum_probs=164.3
Q ss_pred chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHH
Q 012167 35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGI 114 (469)
Q Consensus 35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i 114 (469)
.+.+.+++++++.+++.+.+.|...+++.|.++++ ++..+.+++.++.++|.++||.+++++.+..||+..|.+
T Consensus 106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~------~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~ 179 (1140)
T PRK06814 106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKD------ELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVAL 179 (1140)
T ss_pred hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCcc------ccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 35788999999999999999999999999999875 467899999999999999999999999999999999844
Q ss_pred HHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCC
Q 012167 115 STATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPS 194 (469)
Q Consensus 115 ~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~ 194 (469)
.++..++++++.... + +.+++....+. . . . ..+.
T Consensus 180 ~~~~~~~~~~~~~~~-~---~~~~~~~~~~~--------------~--~-------------~---~~~~---------- 213 (1140)
T PRK06814 180 LMGIAVLGWLASLFI-P---KTGNAAPDLKI--------------D--R-------------N---IIRS---------- 213 (1140)
T ss_pred HHHHHHHHHHHHhhC-C---CCCCCCCCCee--------------c--c-------------c---hHHH----------
Confidence 444433333322221 1 11111000000 0 0 0 0000
Q ss_pred CCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHH-cccCCCCcccCCC
Q 012167 195 QKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAAT-MNTKLGSLKVPPA 273 (469)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~-~d~~~~g~~ip~~ 273 (469)
. .+.....++-..+..+.+....++.+.....+.++..... ...+ ..-.+
T Consensus 214 ------~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~----~~~~g 264 (1140)
T PRK06814 214 ------T-------------------ITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGD----ENVAT 264 (1140)
T ss_pred ------H-------------------HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCc----hHHHH
Confidence 0 0000001100011112222223333333332223322211 1111 01134
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC-CCCCCcc
Q 012167 274 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLV-NSSEPLP 352 (469)
Q Consensus 274 ~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~-~~~~~~~ 352 (469)
++.+...+..++...+..++. ++. ...+.+.+|.++.+++.+.+++.... .......+. -..-...
T Consensus 265 ~~~~~~~~g~~ig~~~~g~l~----~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~ 331 (1140)
T PRK06814 265 LFLAVFSVGVAVGSFLASKLS----EGR-------ITLLYVPIGALLMGLFGLDLAFASSS--VPAEPAQLKSILVFLSK 331 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----CCc-------eeeeeehHHHHHHHHHHHHHHhcccc--cccccccccchhhhhcc
Confidence 555666666666666666653 221 11223445555555444433321000 000000000 0000001
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
.+.|++++..++.+++..+..+...+++.+.+|++++|.++|++++...+|..+++.+++.+.
T Consensus 332 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 332 RHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred cccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788899999999999999999999999999999999999999999999998888775
No 26
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.30 E-value=5.7e-10 Score=115.82 Aligned_cols=85 Identities=22% Similarity=0.342 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHH---HhhcccCCcchhHH
Q 012167 37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFV---VWIEDNKGWQWGFG 113 (469)
Q Consensus 37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~---~~l~~~~g~~~~F~ 113 (469)
.+.+++++.+.++|.|...+...++++|.++++ +|..++++++.+.++|.++++.++ +.+.+..+|++.|.
T Consensus 127 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~ 200 (481)
T TIGR00879 127 VEMLIVGRVLLGIGVGIASALVPMYLSEIAPKA------LRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLG 200 (481)
T ss_pred hHHHHHHHHHHHhhhhHHHhHHHHHHHccCChh------hhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHH
Confidence 467888999999999999999999999999865 367789999999999999999999 77778889999999
Q ss_pred HHHHHHHHHHHHHH
Q 012167 114 ISTATILLSIPIFL 127 (469)
Q Consensus 114 i~~v~~~i~~ii~~ 127 (469)
+.++..++.++..+
T Consensus 201 ~~~~~~~~~~~~~~ 214 (481)
T TIGR00879 201 LQLIPAGLLFLGLF 214 (481)
T ss_pred HHHHHHHHHHHHHh
Confidence 97666655544433
No 27
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.27 E-value=1.7e-09 Score=109.33 Aligned_cols=88 Identities=14% Similarity=0.115 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
+.+.+++...+.+.+.+...|...++..+..++++ +.+....++.+.+.++|..+++.+++++.+.+||++.|.+.
T Consensus 86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~ 161 (375)
T TIGR00899 86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG----REAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTA 161 (375)
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc----hhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHH
Confidence 35556666666676677777877777777654321 01112357788889999999999999999999999999998
Q ss_pred HHHHHHHHHHHH
Q 012167 116 TATILLSIPIFL 127 (469)
Q Consensus 116 ~v~~~i~~ii~~ 127 (469)
++..++..++.+
T Consensus 162 ~~~~~~~~~~~~ 173 (375)
T TIGR00899 162 ALAFVLCGVLVW 173 (375)
T ss_pred HHHHHHHHHHHH
Confidence 887766655443
No 28
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.26 E-value=1.3e-09 Score=113.47 Aligned_cols=82 Identities=16% Similarity=0.110 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
+.+.+++.+.+.+++.|...|...+.+.++++++ +|..++++++.+.++|..+++.+++++.+.+||++.|.+.
T Consensus 110 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~ 183 (434)
T PRK11663 110 SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRT------ERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIA 183 (434)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 3566777777888889988899999999999854 4678899999999999999999999999999999999987
Q ss_pred HHHHHHHH
Q 012167 116 TATILLSI 123 (469)
Q Consensus 116 ~v~~~i~~ 123 (469)
++..++..
T Consensus 184 ~i~~~~~~ 191 (434)
T PRK11663 184 GIIAIVVG 191 (434)
T ss_pred HHHHHHHH
Confidence 77655443
No 29
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.26 E-value=1.8e-09 Score=109.50 Aligned_cols=87 Identities=13% Similarity=0.116 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
+.+.+++++.+.++|.+...+...+++.|.++++ +|.+.+++++...++|..+++.+++++.++.+|+..|.+.
T Consensus 92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~ 165 (385)
T TIGR00710 92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGE------ELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFL 165 (385)
T ss_pred cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 4677888899999999999999999999999854 4678899999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHh
Q 012167 116 TATILLSIPIFLL 128 (469)
Q Consensus 116 ~v~~~i~~ii~~~ 128 (469)
++..++..+...+
T Consensus 166 ~~~~~~~~~~~~~ 178 (385)
T TIGR00710 166 SLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHH
Confidence 8777666555443
No 30
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.26 E-value=2.3e-10 Score=119.83 Aligned_cols=285 Identities=11% Similarity=0.017 Sum_probs=155.4
Q ss_pred hHHHHHH-HHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 37 AVMLFAG-LYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 37 ~~~~~~~-l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
.+.+++. .++.++|.|...+...+.+.+.+++ +|.++.++.+.+.++|..+++.+.+++.+.+||+++|.+.
T Consensus 107 ~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~ 179 (455)
T TIGR00892 107 VIELYLTAGFITGLGLAFNFQPSLTMLGKYFYR-------RRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLIL 179 (455)
T ss_pred HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHh-------hHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 4445543 3667888887656566777887742 3667899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCCC
Q 012167 116 TATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQ 195 (469)
Q Consensus 116 ~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~ 195 (469)
++..++..+..++.++.-.. +...+... +.... + +... ++..... .
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~--~~~~~~~~----------~~~~~--~------------~~~~---~~~~~~~--~--- 225 (455)
T TIGR00892 180 GGLLLHCCVCGALMRPVGPS--QRVSKSKS----------KEGLP--P------------DGST---KKLSKKS--T--- 225 (455)
T ss_pred HHHHHHHHHHHHHhCCCCcc--cccccccc----------cccCC--C------------CCcc---ccccccc--h---
Confidence 88777665544333221100 00000000 00000 0 0000 0000000 0
Q ss_pred CCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCCCcccCCCCC
Q 012167 196 KPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASL 275 (469)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g~~ip~~~l 275 (469)
. +. ..++. ..+-..+ +. ++...+...+....+....+.+..+.. +.... ....+.+
T Consensus 226 ------------~-~~-~~~~~--~~~~~~~-~~---~~~~~~~~~l~~~~~~~~~~~l~~~~~--~~g~s--~~~~g~~ 281 (455)
T TIGR00892 226 ------------A-EK-INRFL--DFSLFTH-RG---FLVYLSGNVIMFLGFFAPIIFLVPYAK--DKGVD--EYEAAFL 281 (455)
T ss_pred ------------h-hh-hhhhc--chHHhcC-ch---HHHHHHHHHHHHHHccchHHHHHHHHH--HcCCC--HHHHHHH
Confidence 0 00 00000 0000000 11 112222222222333333222222222 11111 0112344
Q ss_pred CChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 012167 276 PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQR--IGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI 353 (469)
Q Consensus 276 ~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~r--i~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ 353 (469)
.++..+..++..|+..++.+ |. + ....++ +.+++++.+++++..... .
T Consensus 282 ~~~~~~~~~~~~~~~g~l~d----~~--~---~~~~~~~~~~~~~~~~~l~~ll~~~~---------------------~ 331 (455)
T TIGR00892 282 LSIIGFVDIFARPSCGLIAG----LK--W---IRPHVQYLFSFALLFNGLTHLLCALA---------------------G 331 (455)
T ss_pred HHHHHHHHHHHHHHHHHHhc----cc--c---cCHHHHHHHHHHHHHHHHHHHHHHHh---------------------c
Confidence 55556666666666666543 11 0 122222 333444444444333221 2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
+.++++...++.+++.....+...+.+.+..|++.++..+|++.....+|+.+++.+.+.+.+
T Consensus 332 ~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~ 394 (455)
T TIGR00892 332 DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVD 394 (455)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeeh
Confidence 455667778889999988999999999999999999999999999999999999999887764
No 31
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.25 E-value=1.5e-09 Score=115.10 Aligned_cols=267 Identities=13% Similarity=0.138 Sum_probs=168.1
Q ss_pred chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHH
Q 012167 35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGI 114 (469)
Q Consensus 35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i 114 (469)
.+.+.+++..++++++.+.+.|..++++.+..+++ +..++.++.....|+.-++||.++|.+....|-...|.+
T Consensus 101 ~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~------~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~i 174 (524)
T PF05977_consen 101 LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKE------DLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLI 174 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh------hHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 45788888899999999999999999999999875 366788999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCC
Q 012167 115 STATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPS 194 (469)
Q Consensus 115 ~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~ 194 (469)
.+++.+++++.+...++.. +++..+-++..+-+...+ +|
T Consensus 175 nalsfl~~i~~l~~~~~~~---~~~~~~~e~~~~~l~~G~--------------------------ry------------ 213 (524)
T PF05977_consen 175 NALSFLISILALLRWKPPP---PPSSLPRERFFSALREGL--------------------------RY------------ 213 (524)
T ss_pred HHHHHHHHHHHHHHccccc---cccccchhhhhhhHHHHH--------------------------HH------------
Confidence 9999888766555443221 111111111100000000 00
Q ss_pred CCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHH-HcccCCCCcccCCC
Q 012167 195 QKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAA-TMNTKLGSLKVPPA 273 (469)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~-~~d~~~~g~~ip~~ 273 (469)
+...+.+..++. ...++.....-....++..++ .++. .+.
T Consensus 214 -----------------------------v~~~~~l~~~l~---~~~~~~l~~~a~~aLlPl~a~~~l~~-------~a~ 254 (524)
T PF05977_consen 214 -----------------------------VRSSPPLRSVLL---RSFLFNLFASAVWALLPLFARDVLGG-------GAS 254 (524)
T ss_pred -----------------------------HhcchHHHHHHH---HHHHHHHhhhHHHHhhhHHHHHHhCC-------cHH
Confidence 000111111111 111122111111122333332 2221 222
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 012167 274 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI 353 (469)
Q Consensus 274 ~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ 353 (469)
.+..+.+ ..-.+-+.+.++.+..+|. .+..+-+..+.++.+++++..++. -
T Consensus 255 ~yGll~a--~~gvGai~Gal~~~~l~~~------~~~~~lv~~~~~~~a~~~~~lal~---------------------~ 305 (524)
T PF05977_consen 255 GYGLLLA--AFGVGAILGALLLPRLRRR------LSSRRLVLLASLLFALALLLLALS---------------------P 305 (524)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHhhcc------cCcchhhHHHHHHHHHHHHHHhcc---------------------h
Confidence 2222221 1122334444444444442 333444667777777777666554 2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
+.+..++..++.|++...........+-+.+|++++|++++++.+....+..+|.++.+.+.+
T Consensus 306 ~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 306 SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD 368 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788999999999999999999999999999999999999888888888888887765
No 32
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.25 E-value=2.7e-09 Score=109.66 Aligned_cols=83 Identities=17% Similarity=0.204 Sum_probs=72.6
Q ss_pred chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHH
Q 012167 35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGI 114 (469)
Q Consensus 35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i 114 (469)
.+.+.+++.+.+.+++.|...|...+++.|+++++ +|..+.++++.+.|+|.+++|.+++++.+.+||+..|.+
T Consensus 106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~------~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~ 179 (394)
T PRK10213 106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPR------TVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNA 179 (394)
T ss_pred ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 45788999999999999999999999999999754 467789999999999999999999999999999999998
Q ss_pred HHHHHHHHH
Q 012167 115 STATILLSI 123 (469)
Q Consensus 115 ~~v~~~i~~ 123 (469)
.++..++..
T Consensus 180 ~~~l~~~~~ 188 (394)
T PRK10213 180 AAVMGVLCI 188 (394)
T ss_pred HHHHHHHHH
Confidence 776555443
No 33
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.24 E-value=4.4e-09 Score=111.29 Aligned_cols=85 Identities=16% Similarity=0.181 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCcchhHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED-NKGWQWGFGI 114 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~-~~g~~~~F~i 114 (469)
+.+.+++...+.+++.+...+...++..|+++++ +|.++.++.-.+.++|.++++.+++++.+ ..||+..|.+
T Consensus 106 ~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~------~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i 179 (491)
T PRK11010 106 QLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE------ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWL 179 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHH
Confidence 4677777888889999999999999999999854 36677888889999999999999999988 4799999999
Q ss_pred HHHHHHHHHHHH
Q 012167 115 STATILLSIPIF 126 (469)
Q Consensus 115 ~~v~~~i~~ii~ 126 (469)
.++..++..+..
T Consensus 180 ~a~l~ll~~l~~ 191 (491)
T PRK11010 180 MAALLIPCIIAT 191 (491)
T ss_pred HHHHHHHHHHHH
Confidence 887776665443
No 34
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.24 E-value=2.5e-09 Score=109.70 Aligned_cols=72 Identities=8% Similarity=0.039 Sum_probs=52.1
Q ss_pred cccccccccchhcccCCCCChhhhhhHh-HHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHHHH
Q 012167 51 VGGIKGSLAPHGAEQYDETTQLGRKQRS-AFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFL 127 (469)
Q Consensus 51 ~G~~kp~~~a~~~dq~~~~~~~~~~~~~-~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~v~~~i~~ii~~ 127 (469)
.+...|...++..|+.++++ +.. .+.++...+.++|.++||.+++++.+++||+..|.+.++..++..+...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 191 (393)
T PRK15011 119 GSTANPQMFALAREHADKTG-----REAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVW 191 (393)
T ss_pred HHhhHHHHHHHHHHHhhhcc-----chHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777654321 122 2336788899999999999999999999999999988876665554433
No 35
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.24 E-value=1.5e-09 Score=109.48 Aligned_cols=261 Identities=10% Similarity=0.085 Sum_probs=150.7
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCC--------
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-------- 107 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g-------- 107 (469)
+.+.++....+.+++.+...|...+++.|.++++ +|..+.++...+.++|.++++.+++++..+.|
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~ 155 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDE------ELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITL 155 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh------hhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 3455555556677888888999999999999753 46788899999999999999999999988888
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCCcccccCCCCCCch-hHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCcccccc
Q 012167 108 WQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLT-TIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNS 186 (469)
Q Consensus 108 ~~~~F~i~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~-~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ 186 (469)
|+..|.+.++..+++.++.++..+. +++..+.. +..+-. ++
T Consensus 156 wr~~f~i~ai~~l~~~~~~~~~~~e----~~~~~~~~~~~~~~~----~~------------------------------ 197 (356)
T TIGR00901 156 WGYIFFWTALLILPGLLVTLFLAKE----PQEDASVPKPLTQAV----LK------------------------------ 197 (356)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccC----CCcccccchhHHHHH----HH------------------------------
Confidence 9999999888777765543332211 11100000 000000 00
Q ss_pred ccCCCCCCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCC
Q 012167 187 NVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLG 266 (469)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~ 266 (469)
.+ .+.-..+...+++.+.+...++...+.+..+.++.+..++ +
T Consensus 198 ----------------------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g 240 (356)
T TIGR00901 198 ----------------------------PI-----REFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDM----G 240 (356)
T ss_pred ----------------------------HH-----HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----C
Confidence 00 0000001111122333333344444444444444332221 1
Q ss_pred CcccCCCC---CCChhH-HHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 012167 267 SLKVPPAS---LPVFPV-IFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNS 342 (469)
Q Consensus 267 g~~ip~~~---l~~~n~-l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~ 342 (469)
.+++. +..... +..++..++..++. +| .+..+.+.+++++.+++.....+... . ...+
T Consensus 241 ---~~~~~~g~~~~~~~~~~~~~g~~~~g~l~----~r-------~g~~~~l~~~~~~~~~~~~~~~~~~~-~---~~~~ 302 (356)
T TIGR00901 241 ---FSKEEIALVAKINGLLGAILGGLIGGIIM----QP-------LNILYALLLFGIVQALTNAGFVWLAS-N---GHHD 302 (356)
T ss_pred ---CCHHHHHHHhHHHHHHHHHHHHHHHHHHH----hh-------hhHHHHHHHHHHHHHHHHHHHHHHHh-c---Cccc
Confidence 22332 232223 22333444444443 33 23334566777777766655443310 0 0000
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHH
Q 012167 343 GLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLA 401 (469)
Q Consensus 343 g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~ 401 (469)
+ ....+.++++...++.++++.+..+....+..+.+|+++||+++|+.....+
T Consensus 303 ~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 303 G------ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred c------cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 0 0012455677778899999999999999999999999999999999877654
No 36
>PRK10504 putative transporter; Provisional
Probab=99.22 E-value=9.2e-09 Score=107.94 Aligned_cols=87 Identities=13% Similarity=0.115 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
+.+.+++++.+.++|.|...|...+++.|.++++ ++..++++...+.++|..++|.+++++.++.||++.|.+.
T Consensus 97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~ 170 (471)
T PRK10504 97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPRE------QYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN 170 (471)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH
Confidence 3667788899999999999999999999988743 4567889999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHh
Q 012167 116 TATILLSIPIFLL 128 (469)
Q Consensus 116 ~v~~~i~~ii~~~ 128 (469)
.....++.+....
T Consensus 171 ~~~~~l~~~~~~~ 183 (471)
T PRK10504 171 IPVGIIGAIATLM 183 (471)
T ss_pred HHHHHHHHHHHHH
Confidence 7766655554443
No 37
>TIGR00895 2A0115 benzoate transport.
Probab=99.21 E-value=3.3e-09 Score=107.63 Aligned_cols=84 Identities=19% Similarity=0.280 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
+.+.++++..+.++|.|...|...+++.|.++++ +|..+++++..+.++|..+++.+++++.+..||+..|.+.
T Consensus 104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~ 177 (398)
T TIGR00895 104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKR------FRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVG 177 (398)
T ss_pred chHHHHHHHHHHhcccccchhhHHHHHHHHcCHH------hhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhh
Confidence 3567888899999999999999999999998753 4677899999999999999999999999999999999988
Q ss_pred HHHHHHHHHH
Q 012167 116 TATILLSIPI 125 (469)
Q Consensus 116 ~v~~~i~~ii 125 (469)
++..++..++
T Consensus 178 ~~~~~~~~~~ 187 (398)
T TIGR00895 178 GIAPLLLLLL 187 (398)
T ss_pred hhHHHHHHHH
Confidence 6555444433
No 38
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.21 E-value=2.1e-09 Score=113.82 Aligned_cols=87 Identities=18% Similarity=0.148 Sum_probs=73.4
Q ss_pred chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHH
Q 012167 35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGI 114 (469)
Q Consensus 35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i 114 (469)
.+.+.+++++.+.++|.|+..|...+.+.+.+.+++ +|.++++++..+.++|..+||.+++++.+++||++.|.+
T Consensus 92 ~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i 166 (495)
T PRK14995 92 PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLI 166 (495)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHH
Confidence 357888999999999999999988888888775431 477899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHH
Q 012167 115 STATILLSIPIF 126 (469)
Q Consensus 115 ~~v~~~i~~ii~ 126 (469)
.....++.+++.
T Consensus 167 ~~~~~~~~~~l~ 178 (495)
T PRK14995 167 NVPIVLVVMGLT 178 (495)
T ss_pred HHHHHHHHHHHH
Confidence 776666555443
No 39
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.20 E-value=1.3e-09 Score=109.56 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
+.+.+++++.+.++|.|...+...+...+.+++ +|..+.+++..+.++|.++++.+.+.+.+..||+..|.+.
T Consensus 90 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~ 162 (377)
T TIGR00890 90 SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-------KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYM 162 (377)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-------ccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHH
Confidence 467788888899999998888888888887753 2567888999999999988777777777778999999998
Q ss_pred HHHHHHHHHHH
Q 012167 116 TATILLSIPIF 126 (469)
Q Consensus 116 ~v~~~i~~ii~ 126 (469)
++..++..+..
T Consensus 163 ~~~~~~~~~~~ 173 (377)
T TIGR00890 163 GIIFLLVIVLG 173 (377)
T ss_pred HHHHHHHHHHH
Confidence 88776655443
No 40
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.19 E-value=9.4e-09 Score=104.26 Aligned_cols=84 Identities=11% Similarity=0.178 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHH
Q 012167 37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIST 116 (469)
Q Consensus 37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~ 116 (469)
.+.+++.+.+.+++.+...+...+++.|.++++ +|.+++++.+.+.++|..+++.+++++.+..+|+..|.+.+
T Consensus 79 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 152 (377)
T PRK11102 79 IDQLIYMRFLHGLAAAAASVVINALMRDMFPKE------EFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLA 152 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHH
Confidence 566778888899999999999999999998754 46788999999999999999999999999899999999877
Q ss_pred HHHHHHHHHH
Q 012167 117 ATILLSIPIF 126 (469)
Q Consensus 117 v~~~i~~ii~ 126 (469)
+..++..+..
T Consensus 153 ~~~~~~~~~~ 162 (377)
T PRK11102 153 LAAILAAALV 162 (377)
T ss_pred HHHHHHHHHH
Confidence 7776655443
No 41
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.19 E-value=2.9e-09 Score=110.10 Aligned_cols=78 Identities=21% Similarity=0.364 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
+.+.+++++.+.++|.|...+...+++.|.++++ +|.++.+++..+.++|.++++.+.+++.+.+||++.|.+.
T Consensus 105 ~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~ 178 (426)
T PRK12307 105 GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKH------LKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVG 178 (426)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHh------HhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHH
Confidence 4778899999999999999999999999998864 3667888999999999999999999999999999999885
Q ss_pred HHHH
Q 012167 116 TATI 119 (469)
Q Consensus 116 ~v~~ 119 (469)
.+..
T Consensus 179 ~~~~ 182 (426)
T PRK12307 179 LLPV 182 (426)
T ss_pred HHHH
Confidence 5443
No 42
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.19 E-value=7e-09 Score=107.82 Aligned_cols=81 Identities=22% Similarity=0.366 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhc--------ccCC
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE--------DNKG 107 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~--------~~~g 107 (469)
+...+.+.+.+.++|.|+..|...++++|.++++ +|..+.++.+.+.+.|.++++.+...+. ..+|
T Consensus 123 ~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g 196 (432)
T PRK10406 123 APALLLLARLFQGLSVGGEYGTSATYMSEVAVEG------RKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWG 196 (432)
T ss_pred HHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCC------cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccc
Confidence 3557888999999999999999999999999865 3556788889999999999887766554 2579
Q ss_pred cchhHHHHHHHHHHH
Q 012167 108 WQWGFGISTATILLS 122 (469)
Q Consensus 108 ~~~~F~i~~v~~~i~ 122 (469)
|+..|.+.++..++.
T Consensus 197 Wr~~F~i~~~~~ll~ 211 (432)
T PRK10406 197 WRIPFALGAVLAVVA 211 (432)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999876655443
No 43
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.18 E-value=8.2e-09 Score=106.96 Aligned_cols=266 Identities=12% Similarity=0.138 Sum_probs=149.5
Q ss_pred hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhc-------ccCCcc
Q 012167 37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE-------DNKGWQ 109 (469)
Q Consensus 37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~-------~~~g~~ 109 (469)
...+++...+.+++.+.+.+...++..+..++. + +|.+..++...+.++|.+++..+.+.+. +..+|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~--~---~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~ 173 (437)
T TIGR00792 99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLDP--R---ERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWF 173 (437)
T ss_pred HHHHHHHHHHHHHHHHhhcccHhhCcccccCCH--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHH
Confidence 455555666677888888888888888876543 2 3667888888999999888766654443 346899
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccC
Q 012167 110 WGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVK 189 (469)
Q Consensus 110 ~~F~i~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~ 189 (469)
..|.+.++..++..++.....+ ++++..+.. + + + +
T Consensus 174 ~~~~i~~~l~~~~~~~~~~~~~----e~~~~~~~~-----------~------~-------------------~--~--- 208 (437)
T TIGR00792 174 MFALVLALIGVVSLIICFFGTK----ERYSEIPKN-----------I------E-------------------K--K--- 208 (437)
T ss_pred HHHHHHHHHHHHHHHHHHcCCE----ecCCCCCcc-----------c------c-------------------c--C---
Confidence 8888877776655544333221 111100000 0 0 0 0
Q ss_pred CCCCCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHH---HHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCC
Q 012167 190 EKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVV---KIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLG 266 (469)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~---~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~ 266 (469)
. +. .+..|.++ .+..+.+...+.+..+....+..... .+..++
T Consensus 209 -----------------------~-~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 254 (437)
T TIGR00792 209 -----------------------L-SL-------KQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYY---FTYVLG 254 (437)
T ss_pred -----------------------C-CH-------HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhhee---EeeecC
Confidence 0 00 01111111 11112222222333222211111111 111111
Q ss_pred CcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 012167 267 SLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVN 346 (469)
Q Consensus 267 g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~ 346 (469)
..-..+++..+..+..++..|+..++. +|. ...+-+.+|.++.+++++...+..
T Consensus 255 -~~~~~~~~~~~~~i~~ii~~~~~~~l~----~r~-------g~~~~~~~~~~~~~~~~~~~~~~~-------------- 308 (437)
T TIGR00792 255 -DPELFSYMGSIAIVAGLIGVLLFPRLV----KKF-------GRKILFAGGILLMVLGYLIFFFAG-------------- 308 (437)
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHHHH----HHh-------CcHHHHHHHHHHHHHHHHHHHHcc--------------
Confidence 000112333444555556666665554 342 222345677777777766554431
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccC-------cchhhHHHHHHHHHHHHHHHHHHHhHhhhcccc
Q 012167 347 SSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAP-------LSMRSLATSLSWASLAMGYYFSTVLVSIVNNIT 418 (469)
Q Consensus 347 ~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP-------~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t 418 (469)
.+.++.+...++.+++.....+...+++.+.+| ++.+|.++|++.+...+|..+++.+.+.+.+..
T Consensus 309 ------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 309 ------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 133455566788889998888999999888876 667899999999999999999999988876543
No 44
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.18 E-value=1.3e-09 Score=114.58 Aligned_cols=314 Identities=14% Similarity=0.104 Sum_probs=167.0
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
+...+++++.+.++|.|...|...+++.|.++++ +|.+++++++.+.++|..+++.+++++.+++||++.|.+.
T Consensus 89 ~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~ 162 (485)
T TIGR00711 89 NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPE------KRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLIN 162 (485)
T ss_pred CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhh
Confidence 4677888999999999999999999999999854 4677899999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHH-HHHH--HhhccCCCCCccccccccCCCCCCCCcc-ccccccCCC
Q 012167 116 TATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVL-TAAI--FNTCKSKNSSNAVTEVHSSPTCSNESRD-EGNSNVKEK 191 (469)
Q Consensus 116 ~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~-~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~a~~~~~~ 191 (469)
+...++..++..+..+.-+ +.+.++.......+ ..+. ......... ...| +...+....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~ 225 (485)
T TIGR00711 163 VPIGIIVVVVAFFILPRDK--PAASENFDFLGLLLLSVGLGSLLYGLSEGP---------------ERGWFDSNEILILS 225 (485)
T ss_pred hHHHHHHHHHHHHHcCCcc--ccccCCCcHHHHHHHHHHHHHHHHHHhhCC---------------CCCCCCchHHHHHH
Confidence 7666555544333222111 11111111110000 0000 000000000 0001 000000000
Q ss_pred CCCCCCchhHHHH-hhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHH-cccCCCCcc
Q 012167 192 VPSQKPTEDIKFL-NRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAAT-MNTKLGSLK 269 (469)
Q Consensus 192 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~-~d~~~~g~~ 269 (469)
... --.-..+. ...+++.+..+++.++ + +.+. ...+...+....+....+..+....+ .+.+ .
T Consensus 226 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s----~ 290 (485)
T TIGR00711 226 ITG--LVAIIAFVVWELTDDNPLVDLRLFK-----Y-RNFT---IGCVYMSLLGLGLYGSFYLLPLYLQQVLGYT----A 290 (485)
T ss_pred HHH--HHHHHHHHHHHHcCCCCccCHHHHc-----C-CChH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----H
Confidence 000 00000000 0000000000111000 0 1111 11111122222222222222222211 1111 0
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 012167 270 VPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSE 349 (469)
Q Consensus 270 ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~ 349 (469)
...+.+.....+..++..|+..++.+ | .+..+-+.+|.++.++++....+.-
T Consensus 291 ~~~g~~~~~~~~~~~~~~~~~g~l~~----r-------~~~~~~~~~g~~~~~~~~~~~~~~~----------------- 342 (485)
T TIGR00711 291 LQAGLHILPVGLAPMLSSPIAGRMGD----K-------IDPRKLVTIGLILYAVGFYWRAFTF----------------- 342 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----h-------cCcHHHHHHHHHHHHHHHHHHhccC-----------------
Confidence 11234445555666666777666543 3 2222335667777777766654210
Q ss_pred CcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167 350 PLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 350 ~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
....+.++++...++.++|..+..+.....+.+..|++.+|.++|++++...+|+.+|+.+.+.+.
T Consensus 343 ~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~ 408 (485)
T TIGR00711 343 TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTIL 408 (485)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012345556666889999999888888888888899999999999999999999999887776554
No 45
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.15 E-value=1.1e-08 Score=104.43 Aligned_cols=71 Identities=10% Similarity=0.053 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 112 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F 112 (469)
+.+.+++++++.+++.|...|...+...+..+++ +|.+.+++++.+.|+|..+|+.+++++.+...+...+
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~ 163 (381)
T PRK03633 93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR------NRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPW 163 (381)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH
Confidence 4778888999999999999998887777776643 3667899999999999999999999988764444333
No 46
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.15 E-value=9.3e-09 Score=104.77 Aligned_cols=83 Identities=20% Similarity=0.130 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
+...+++++++.++|.|.. ++..+..+++++++ +|.++.+++..+.++|.++++++++++.+++||+..|.+.
T Consensus 78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~------~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~ 150 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIREE------RRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI 150 (368)
T ss_pred cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 5788999999999999975 45555568888753 4778999999999999999999999999999999999986
Q ss_pred HHHHHHHHHH
Q 012167 116 TATILLSIPI 125 (469)
Q Consensus 116 ~v~~~i~~ii 125 (469)
++..++..++
T Consensus 151 ~~l~~~~~~~ 160 (368)
T TIGR00903 151 AAVAAAGIIL 160 (368)
T ss_pred HHHHHHHHHH
Confidence 6665544443
No 47
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.15 E-value=1.1e-08 Score=104.57 Aligned_cols=85 Identities=13% Similarity=0.173 Sum_probs=70.9
Q ss_pred chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHH
Q 012167 35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGI 114 (469)
Q Consensus 35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i 114 (469)
.+.+.+++++.+.+++.|...|...+...+.++++ +|.++++++..+.++|..+++.+++++.+..+|++.|.+
T Consensus 89 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~ 162 (382)
T PRK10091 89 SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPG------KVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL 162 (382)
T ss_pred CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChH------HhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence 34788899999999999998888888888887653 355688888999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 012167 115 STATILLSIPI 125 (469)
Q Consensus 115 ~~v~~~i~~ii 125 (469)
.++..++..+.
T Consensus 163 ~~~~~~~~~~~ 173 (382)
T PRK10091 163 IAVFNIAVLAS 173 (382)
T ss_pred HHHHHHHHHHH
Confidence 88766555443
No 48
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.15 E-value=1.6e-08 Score=103.91 Aligned_cols=295 Identities=12% Similarity=0.068 Sum_probs=162.6
Q ss_pred HHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHHHHHH
Q 012167 41 FAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATIL 120 (469)
Q Consensus 41 ~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~v~~~ 120 (469)
++.+.+.++|.|++.|...+++.|.++++ +|.++.++.....++|.++||.++|++.+. .|...|.+.+.+.+
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~------~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~ 164 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPGE------KLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYL 164 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 55677899999999999999999999864 477899999999999999999999999885 47777777665554
Q ss_pred HHHHHHHhcCCcccccCCCCCCch-hHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCCCCCch
Q 012167 121 LSIPIFLLGSPFYRNKIPTGSPLT-TIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTE 199 (469)
Q Consensus 121 i~~ii~~~~~~~~~~~~p~~~~l~-~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~~~~ 199 (469)
++.+....-. +.+++..+.+ +..+.. ...++ .
T Consensus 165 ~~~~~~~~l~----~~~~~~~~~~~~~~~~~-~~~~~---------------------------~--------------- 197 (393)
T PRK11195 165 LAALFNLFIP----RLGARRPGQSWNPIALL-RDFFH---------------------------A--------------- 197 (393)
T ss_pred HHHHHHhcCC----CCcccccccCCCHHHHH-HHHHH---------------------------H---------------
Confidence 4433322211 1111100000 000000 00000 0
Q ss_pred hHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHH-HcccCCCCcccCCCCCCCh
Q 012167 200 DIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAA-TMNTKLGSLKVPPASLPVF 278 (469)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~-~~d~~~~g~~ip~~~l~~~ 278 (469)
+ ..+-..+. ++. ......+++.+.......+....+ ....+ ....+.+...
T Consensus 198 ----------------~-----~~l~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s----~~~~G~~~~~ 249 (393)
T PRK11195 198 ----------------C-----RVLWRDKL-GRF--SLAGTTLFWGAGATLRFLVLAWAPVALGIT----LNQPAYLQAV 249 (393)
T ss_pred ----------------H-----HHHHhCch-hHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----hhHHHHHHHH
Confidence 0 00000011 111 111222333333333222221111 11111 0112334444
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHH
Q 012167 279 PVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWV 358 (469)
Q Consensus 279 n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wl 358 (469)
.++..++..++.+++. +| ....+.+..|+. .++.+...++. .+.++.
T Consensus 250 ~~~g~i~g~~~~~~l~----~~-------~~~~~~~~~g~~-~~~~~~~~~~~---------------------~~~~~~ 296 (393)
T PRK11195 250 VAIGIAVGAGAAARLV----TL-------ETVLRVLPAGIL-MGLVVLLMALQ---------------------HSLLPA 296 (393)
T ss_pred HHHHHHHHHHHHHHHh----cC-------CcccchHHHHHH-HHHHHHHHHHH---------------------hHHHHH
Confidence 4455555555554432 22 122233445543 33332222211 245566
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHhhccCcch-hhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhH
Q 012167 359 ALQYLFLGSADLFTLAGMMEFFFTDAPLSM-RSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHL 437 (469)
Q Consensus 359 i~~~~l~~igE~~i~~~~~~~~~~~aP~~~-~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l 437 (469)
+...++.+++..+..+...+.+.+.+|++. +|..+|+.++...+|..++..+...+... .+ +.
T Consensus 297 ~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~--------~~--------~~ 360 (393)
T PRK11195 297 YPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKL--------GV--------PV 360 (393)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHc--------CC--------CH
Confidence 777788999988888888888888877766 79999999999999999988887766431 11 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 012167 438 ERFYWLMCILGGLNFLHFLFWAARYKYSS 466 (469)
Q Consensus 438 ~~~f~~la~l~l~~~l~~~~~~~~~~~~~ 466 (469)
.+.+..++.+.......++...+|.+++-
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK11195 361 VAVIVGFGLLVALAMALLWRWHRRNQRQF 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 44566666665555566666666655543
No 49
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.15 E-value=1.8e-08 Score=105.86 Aligned_cols=85 Identities=19% Similarity=0.238 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhc--------ccCC
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE--------DNKG 107 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~--------~~~g 107 (469)
....+++++++.++|.|+.-|...++++|+++++ +|..+.+++..+..+|.++++.++..+. +.+|
T Consensus 119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g 192 (479)
T PRK10077 119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH------IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDG 192 (479)
T ss_pred HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh------hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCC
Confidence 3567889999999999999999999999999864 3667888888999999999887766543 4579
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 012167 108 WQWGFGISTATILLSIPIF 126 (469)
Q Consensus 108 ~~~~F~i~~v~~~i~~ii~ 126 (469)
|++.|.+.++..++..+..
T Consensus 193 Wr~~f~~~~~~~~~~~~~~ 211 (479)
T PRK10077 193 WRYMFASEAIPALLFLMLL 211 (479)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 9999998877666654433
No 50
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.14 E-value=1.5e-08 Score=104.10 Aligned_cols=81 Identities=10% Similarity=0.312 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccC-CcchhHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK-GWQWGFGI 114 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~-g~~~~F~i 114 (469)
+...+++++++.++|.|...+...+.+.+++++ +|..+.+++..+.++|..+|+.+++++.++. +|+..|.+
T Consensus 96 ~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~ 168 (393)
T PRK09705 96 QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQ-------RTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAW 168 (393)
T ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHHccc-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 366788899999999999999999999988863 2557888888999999999999999998875 89988776
Q ss_pred HHHHHHHHH
Q 012167 115 STATILLSI 123 (469)
Q Consensus 115 ~~v~~~i~~ 123 (469)
.++..++.+
T Consensus 169 ~~~~~~~~~ 177 (393)
T PRK09705 169 WALPAVVAL 177 (393)
T ss_pred HHHHHHHHH
Confidence 555444333
No 51
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.14 E-value=1.8e-08 Score=105.34 Aligned_cols=84 Identities=11% Similarity=0.156 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHH-HHHHHHHHhhcccCCcchhHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGA-LIAVTFVVWIEDNKGWQWGFGI 114 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa-~i~~~~~~~l~~~~g~~~~F~i 114 (469)
+.+.+++.+.+.+++.|...|...+...++++++ +|..+.++++.+.++|. +++++++..+....+|++.|.+
T Consensus 119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i 192 (452)
T PRK11273 119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYM 192 (452)
T ss_pred cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChH------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHH
Confidence 3566777888899999999998888899988754 36678899999999986 5566654444444599999999
Q ss_pred HHHHHHHHHHH
Q 012167 115 STATILLSIPI 125 (469)
Q Consensus 115 ~~v~~~i~~ii 125 (469)
.++..++..++
T Consensus 193 ~~~~~~~~~~l 203 (452)
T PRK11273 193 PAFAAILVALF 203 (452)
T ss_pred HHHHHHHHHHH
Confidence 88776654433
No 52
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.13 E-value=8.4e-09 Score=107.72 Aligned_cols=311 Identities=14% Similarity=0.152 Sum_probs=184.7
Q ss_pred hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhccc-CCcchhHHHH
Q 012167 37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN-KGWQWGFGIS 115 (469)
Q Consensus 37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~-~g~~~~F~i~ 115 (469)
.+.+.+.+++.|++.|...|++..+.+++.|++ +|..+.+..+.+..+|.+++..++|++-+. .||+..|++.
T Consensus 128 ~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~------Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~ 201 (466)
T KOG2532|consen 128 FYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPN------ERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVF 201 (466)
T ss_pred chhhHHHHHHhHHHHhHHHhhhhceeeeECCHH------HHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHH
Confidence 346788899999999999999999999999975 377899999999999999999999999998 9999999998
Q ss_pred HHHHHHHHHHHHhcCCcccccCCCCCCchh--HHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCC
Q 012167 116 TATILLSIPIFLLGSPFYRNKIPTGSPLTT--IFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVP 193 (469)
Q Consensus 116 ~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~--~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~ 193 (469)
++..++-.+++.+. |.+ .|+++|... ..+.+. + .+......
T Consensus 202 g~~g~i~~~~w~~~---~~d-~P~~h~~is~~El~~I~----~----------------------------~k~~~~~~- 244 (466)
T KOG2532|consen 202 GIVGLIWFILWFLF---YSD-SPSKHPNISEKELKYIE----K----------------------------GKSEAHVK- 244 (466)
T ss_pred HHHHHHHHHHHHHH---hcC-CcccCCCCCHHHHHHHH----h----------------------------cccccccC-
Confidence 87775554443331 333 355454321 111110 0 00000000
Q ss_pred CCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHH-HHcccCCCCccc-C
Q 012167 194 SQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQA-ATMNTKLGSLKV-P 271 (469)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa-~~~d~~~~g~~i-p 271 (469)
++...|| |++++-.++|...+..+. .+.....+..+. ..|+ ++.++.+ .
T Consensus 245 ----------------~~~~vP~-----------~~i~ts~~vwai~~~~f~-~~~~~~~l~~y~PtY~~-~VL~f~v~~ 295 (466)
T KOG2532|consen 245 ----------------KKPPVPY-----------KAILTSPPVWAIWISAFG-GNWGFYLLLTYLPTYLK-EVLGFDVRE 295 (466)
T ss_pred ----------------CCCCCCH-----------HHHHcCHHHHHHHHHHHH-HHHHHHHHHHHhhHHHH-HHhCCChhh
Confidence 0012233 334333333332221111 111111111111 1222 1122222 3
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHH--HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 012167 272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGT--GLILSIVAMAVAALVEIKRKRVAVNSGLVNSSE 349 (469)
Q Consensus 272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~--G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~ 349 (469)
.+++.+++.+...+...+.+.+-+++.+| .-. .+..+|+.- ++...+++++++++.. .+
T Consensus 296 ~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~--------------~~- 356 (466)
T KOG2532|consen 296 TGFLSALPFLAMAIVKFVAGQLSDRLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTS--------------DE- 356 (466)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeeecC--------------CC-
Confidence 67888899999888888888888888776 222 345556543 4444444444444431 10
Q ss_pred CcchhHHHHHHHHHHHHHHHHHhh--hhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCC
Q 012167 350 PLPITFLWVALQYLFLGSADLFTL--AGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWL 427 (469)
Q Consensus 350 ~~~~s~~wli~~~~l~~igE~~i~--~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~ 427 (469)
.. |. +.++++++..+.. ..+..--....-+++-+.+||+.+....++.+++|.+++.+.+ .+ ...+|
T Consensus 357 -~~----~~--a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~~--t~~eW- 425 (466)
T KOG2532|consen 357 -HR----LL--AVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVT-DN--TREEW- 425 (466)
T ss_pred -cc----hH--HHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeC-CC--CHHHH-
Confidence 01 11 2233333333332 2333333333134677899999999999999999999988763 11 11245
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 012167 428 FGSNLNHYHLERFYWLMCILGGLNFLHFLFWA 459 (469)
Q Consensus 428 ~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~ 459 (469)
...|++.+++.++..++|.++.
T Consensus 426 ----------~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 426 ----------RIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred ----------HHHHHHHHHHHHHhchheeEee
Confidence 5689999999999998888874
No 53
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.12 E-value=3.9e-08 Score=100.68 Aligned_cols=83 Identities=16% Similarity=0.023 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
+.+.+++.+.+.+++.|...+...++..|.++++ ++..+.+++..+..+|.+++|.+++++.+..||+..|.+.
T Consensus 95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~ 168 (394)
T PRK11652 95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGT------QLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFL 168 (394)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 3667888888899998888888888888877643 3556788888999999999999999999989999999987
Q ss_pred HHHHHHHHH
Q 012167 116 TATILLSIP 124 (469)
Q Consensus 116 ~v~~~i~~i 124 (469)
++..++..+
T Consensus 169 ~~~~~~~~~ 177 (394)
T PRK11652 169 LLLGAGVTF 177 (394)
T ss_pred HHHHHHHHH
Confidence 766554433
No 54
>PRK03699 putative transporter; Provisional
Probab=99.11 E-value=3.6e-08 Score=101.17 Aligned_cols=85 Identities=9% Similarity=0.148 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhc-ccCCcchhHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE-DNKGWQWGFGI 114 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~-~~~g~~~~F~i 114 (469)
+.+.+++.+.+.+++.|...+...+.+.+.++++ +|....+..+...++|+.++|.+.+++. +..||+..|.+
T Consensus 94 ~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~ 167 (394)
T PRK03699 94 SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGK------QRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYAC 167 (394)
T ss_pred hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 4667888889999999999999999999998653 3556677788888999999999888764 56799999998
Q ss_pred HHHHHHHHHHHH
Q 012167 115 STATILLSIPIF 126 (469)
Q Consensus 115 ~~v~~~i~~ii~ 126 (469)
.++..++..++.
T Consensus 168 ~~~~~~~~~~~~ 179 (394)
T PRK03699 168 IGLVYVAIFILT 179 (394)
T ss_pred HHHHHHHHHHHH
Confidence 777665554433
No 55
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.11 E-value=5.8e-09 Score=105.53 Aligned_cols=81 Identities=22% Similarity=0.310 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhc--------ccCCcc
Q 012167 38 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE--------DNKGWQ 109 (469)
Q Consensus 38 ~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~--------~~~g~~ 109 (469)
..+++++.+.++|.|...|...+++.|.++++ +|....++.+.+.++|.++++.+.+.+. +.++|+
T Consensus 97 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~ 170 (394)
T TIGR00883 97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPG------KRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWR 170 (394)
T ss_pred HHHHHHHHHHHhhccccccccHHHhhhcCCcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchH
Confidence 46788889999999999999999999998765 3667888899999999999998877653 357999
Q ss_pred hhHHHHHHHHHHHHH
Q 012167 110 WGFGISTATILLSIP 124 (469)
Q Consensus 110 ~~F~i~~v~~~i~~i 124 (469)
+.|.+.++..+++.+
T Consensus 171 ~~~~~~~~~~~~~~~ 185 (394)
T TIGR00883 171 IPFLVSAVLVLIGLY 185 (394)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999887766655443
No 56
>PRK09952 shikimate transporter; Provisional
Probab=99.10 E-value=5.5e-08 Score=101.41 Aligned_cols=78 Identities=23% Similarity=0.299 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhc--------ccCCcc
Q 012167 38 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE--------DNKGWQ 109 (469)
Q Consensus 38 ~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~--------~~~g~~ 109 (469)
..+.+.+.+.++|.|+.-|+..+++.+.++++ +|....+....+.++|.+++..+..++. +.+||+
T Consensus 126 ~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~------~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr 199 (438)
T PRK09952 126 VLLVTLRAIQGFAVGGEWGGAALLAVESAPKN------KKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWR 199 (438)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHhCCCC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChH
Confidence 35778899999999999999999999998865 3556677788888899888877766654 357999
Q ss_pred hhHHHHHHHHHH
Q 012167 110 WGFGISTATILL 121 (469)
Q Consensus 110 ~~F~i~~v~~~i 121 (469)
..|.+.++..++
T Consensus 200 ~~f~~~~~~~l~ 211 (438)
T PRK09952 200 IPFLFSIVLVLI 211 (438)
T ss_pred HHHHHHHHHHHH
Confidence 999987765433
No 57
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.10 E-value=3.5e-08 Score=108.52 Aligned_cols=86 Identities=13% Similarity=0.171 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhccc----------
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN---------- 105 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~---------- 105 (469)
+.+.+++++++.++|.|+..|...+++.+.++++ +|...++++..+..+|.++++.++.++...
T Consensus 254 s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~------~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~ 327 (742)
T TIGR01299 254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQE------KRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSA 327 (742)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccc
Confidence 4678889999999999999999999999999854 466778888888899999988776555432
Q ss_pred ---CCcchhHHHHHHHHHHHHHHHH
Q 012167 106 ---KGWQWGFGISTATILLSIPIFL 127 (469)
Q Consensus 106 ---~g~~~~F~i~~v~~~i~~ii~~ 127 (469)
.+|++.|++.++..++.++..+
T Consensus 328 ~~~~gWR~l~~i~~lp~ll~ll~~~ 352 (742)
T TIGR01299 328 YQFHSWRVFVIVCAFPCVFAIGALT 352 (742)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHH
Confidence 3688888887776665554433
No 58
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.10 E-value=3.4e-08 Score=99.85 Aligned_cols=89 Identities=15% Similarity=0.163 Sum_probs=79.5
Q ss_pred CchhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHH
Q 012167 34 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFG 113 (469)
Q Consensus 34 ~~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~ 113 (469)
..+.+.+.+++++.++.-|.|.+-..+..+|..+++ +|.++.+..+.+..+.-.+|..++.++.+.+|||..|.
T Consensus 98 Ap~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~------~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~ 171 (394)
T COG2814 98 APSFAVLLLARALAGLAHGVFWSIAAALAARLVPPG------KRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFL 171 (394)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc------chhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHH
Confidence 346899999999999999999999999999999986 47789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 012167 114 ISTATILLSIPIFLL 128 (469)
Q Consensus 114 i~~v~~~i~~ii~~~ 128 (469)
+.++.-++.++..+.
T Consensus 172 ~ia~l~ll~~~~~~~ 186 (394)
T COG2814 172 AIAVLALLALLLLWK 186 (394)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777666665544
No 59
>TIGR00898 2A0119 cation transport protein.
Probab=99.07 E-value=5.8e-08 Score=102.85 Aligned_cols=83 Identities=18% Similarity=0.249 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
+.+.+++.+++.+++.|+..|...+++.|.++++ +|..+.+++..+..+|.++++.++.++.+ |++.|.+.
T Consensus 179 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~ 249 (505)
T TIGR00898 179 NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKK------QRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAV 249 (505)
T ss_pred cHHHHHHHHHHHHhhccchHHHHHHHhheecChh------hhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHH
Confidence 4678888999999999999999999999999865 35567777888889999999988877654 99999988
Q ss_pred HHHHHHHHHHHH
Q 012167 116 TATILLSIPIFL 127 (469)
Q Consensus 116 ~v~~~i~~ii~~ 127 (469)
++..++..+..+
T Consensus 250 ~i~~~~~~~~~~ 261 (505)
T TIGR00898 250 SLPTFLFFLLSW 261 (505)
T ss_pred HHHHHHHHHHHH
Confidence 877766555443
No 60
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.06 E-value=3.6e-08 Score=114.74 Aligned_cols=268 Identities=10% Similarity=0.017 Sum_probs=150.8
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhccc--------C-
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN--------K- 106 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~--------~- 106 (469)
+.+.+++.+++.+++.|.+.|...+++.|.++++ +|..+++++..+.++|.++|+.+++++.+. .
T Consensus 102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~ 175 (1146)
T PRK08633 102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKE------NLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEIL 175 (1146)
T ss_pred cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcc------cchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 3678888999999999999999999999999865 367899999999999999999999998775 2
Q ss_pred CcchhHHHHHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCcccccc
Q 012167 107 GWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNS 186 (469)
Q Consensus 107 g~~~~F~i~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ 186 (469)
+|.+.+.+.++...+..+++.+..+ + .|..++... ++ . ..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~----------~~--~--------------------~~---- 215 (1146)
T PRK08633 176 GRIAPAGLVLLAVAVLGLIFAYRLP---K-VPAAAPEVF----------DK--K--------------------KY---- 215 (1146)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCc---C-CCCCCcccc----------cc--c--------------------cc----
Confidence 2333333333333222222222111 1 111000000 00 0 00
Q ss_pred ccCCCCCCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHH---HHHHHHHhhHHHHHhhhcchhHHHHHHH-Hcc
Q 012167 187 NVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVV---KIFPIFMSTIMLNCCLAQLSTFSVQQAA-TMN 262 (469)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~---~~l~l~~~~i~f~~~~~Q~~s~~~~qa~-~~d 262 (469)
... .+..+..+.++ .+..+.+...+++.......+.+..... ...
T Consensus 216 ---------------------------~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 264 (1146)
T PRK08633 216 ---------------------------LFP----KLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLG 264 (1146)
T ss_pred ---------------------------ccH----HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC
Confidence 000 00000111111 1111222223333332222222222211 111
Q ss_pred cCCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 012167 263 TKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNS 342 (469)
Q Consensus 263 ~~~~g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~ 342 (469)
.+ .....+++.++..+..++..++.+++ .+| ....+.+.+|.++.+++++..++.
T Consensus 265 ~s---~~~~~g~~~~~~~ig~~~g~~~~g~l----~~r-------~~~~~~~~~~~~~~~~~~~~~~~~----------- 319 (1146)
T PRK08633 265 LD---NTFQVQYLLAASAIGIGIGSLLAGRL----SGR-------HIELGLVPLGALGLALSLFLLPTA----------- 319 (1146)
T ss_pred CC---cHHHHHHHHHHHHHHHHHHHHHHHHH----hCC-------ceEccchhHHHHHHHHHHHHHHHh-----------
Confidence 11 00011233333344444444444443 333 222234556766666666555443
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167 343 GLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 343 g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
.+.++++...++.+++..+..+....++.+.+|++.||.++|+..+...+|..+++.++.++.
T Consensus 320 ----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 320 ----------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred ----------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 245667777899999999999999999999999999999999999999999888777766554
No 61
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.06 E-value=1.3e-08 Score=103.72 Aligned_cols=82 Identities=22% Similarity=0.342 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCC--cchhHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG--WQWGFG 113 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g--~~~~F~ 113 (469)
+.+.+++++.+.++|.|...|...+++.|.++++ +|..+++++..+.++|..+++.+++.+.+..+ |++.|.
T Consensus 99 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~ 172 (405)
T TIGR00891 99 GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH------LRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFF 172 (405)
T ss_pred cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 4677888999999999999999999999999864 36778999999999999999999999887766 999998
Q ss_pred HHHHHHHHHH
Q 012167 114 ISTATILLSI 123 (469)
Q Consensus 114 i~~v~~~i~~ 123 (469)
+.++..++.+
T Consensus 173 ~~~~~~~~~~ 182 (405)
T TIGR00891 173 ISILPIIFAL 182 (405)
T ss_pred HHHHHHHHHH
Confidence 8665554443
No 62
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.05 E-value=1.2e-08 Score=105.58 Aligned_cols=139 Identities=13% Similarity=0.090 Sum_probs=93.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+.+.+++.+..++..++..++.+++.+ .+.+.++.++.+++++..++.
T Consensus 265 g~~~~~~~~~~~~~~~~~g~l~dr~g~-----------~~~~~~~~~l~~~~~~l~~~~--------------------- 312 (420)
T PRK09528 265 GYLNSFQVFLEALIMFFAPFIINRIGA-----------KNALLLAGTIMAVRIIGSGFA--------------------- 312 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc-----------chhhHHHHHHHHHHHHHHHhc---------------------
Confidence 344555556556666666666443322 233666777777776665543
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHH-HHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCC
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSL-SWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN 431 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl-~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~ 431 (469)
.++++++...++.+++.....+...+++.+..|++.++...+. +++...+|..+++.+.+.+.+.. +|
T Consensus 313 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~------G~----- 381 (420)
T PRK09528 313 TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI------GF----- 381 (420)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh------Cc-----
Confidence 2456777788889988888888888999999999999987655 66778899999998888876521 12
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012167 432 LNHYHLERFYWLMCILGGLNFLHFLFWAA 460 (469)
Q Consensus 432 ~n~~~l~~~f~~la~l~l~~~l~~~~~~~ 460 (469)
...|..++++.++..++.+...|
T Consensus 382 ------~~~f~~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 382 ------QGTYLILGGIVLLFTLISVFTLS 404 (420)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 44677777777666655555444
No 63
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.05 E-value=8.6e-09 Score=103.40 Aligned_cols=309 Identities=12% Similarity=0.038 Sum_probs=175.8
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHH--HhhcccCCcchhHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFV--VWIEDNKGWQWGFG 113 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~--~~l~~~~g~~~~F~ 113 (469)
+.+.+.+-..+.+.-.|.--|.....++.+|+++ +|-+..++.-.+.|+|+.+.+.++ +++..+++|+.+|.
T Consensus 116 s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~------eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~ 189 (448)
T COG2271 116 SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRK------ERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFY 189 (448)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCcc------ccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHH
Confidence 5677777778888889999999999999999976 266778889999999999999999 99999999999999
Q ss_pred HHHHHHH-HHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCC
Q 012167 114 ISTATIL-LSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKV 192 (469)
Q Consensus 114 i~~v~~~-i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~ 192 (469)
+|+++.+ ++++.+...+. .|+..-+.++- +.+- |..... +.+
T Consensus 190 ~pgiiaiival~~~~~~rd-----~Pqs~GLP~ie--------~~~~-----------------------d~~e~~-~~~ 232 (448)
T COG2271 190 FPGIIAIIVALILLFLLRD-----RPQSEGLPPIE--------EYRG-----------------------DPLEIY-EEE 232 (448)
T ss_pred HHHHHHHHHHHHHHHHhCC-----CccccCCCCHH--------Hhhc-----------------------Cchhhh-hhh
Confidence 9998665 45555554432 23311111000 0000 111100 000
Q ss_pred CCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhh------hcchhHHHHHHHHcccCCC
Q 012167 193 PSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCL------AQLSTFSVQQAATMNTKLG 266 (469)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~------~Q~~s~~~~qa~~~d~~~~ 266 (469)
+ |. .+. +..| .-.|.+++--.+|...+.+..+| ++....|..|..+.+..
T Consensus 233 ~---~~---------------~~l---s~~~-i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~-- 288 (448)
T COG2271 233 K---EN---------------EGL---TAWQ-IFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLV-- 288 (448)
T ss_pred c---cC---------------CCc---cHHH-HHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHH--
Confidence 0 00 000 0000 12233443334444444444443 33444566554454432
Q ss_pred CcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 012167 267 SLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVN 346 (469)
Q Consensus 267 g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~ 346 (469)
.+.+..++-...-+...-+.+++.+++.+.+ |...+++++..-++.....- .+
T Consensus 289 ----~a~~a~~lfE~agl~G~Ll~GwlSDklfkgr-----------R~p~~~i~~~~i~~~~~~~w-----~~------- 341 (448)
T COG2271 289 ----KANWAISLFEVAGLPGTLLAGWLSDKLFKGR-----------RGPMALIFMLLITASLVLYW-----LA------- 341 (448)
T ss_pred ----HHHHHHHHHHHHhhHHHHHHHHHHHHhcccc-----------cchHHHHHHHHHHHHHHHHH-----cC-------
Confidence 2344444445556666777888988887532 11123332222222211110 00
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHhhhhhH--HHHhhccCcchhhHHHHHHHHHHHH-HHHHHHHhHhhhccccccCCC
Q 012167 347 SSEPLPITFLWVALQYLFLGSADLFTLAGMM--EFFFTDAPLSMRSLATSLSWASLAM-GYYFSTVLVSIVNNITSTYRH 423 (469)
Q Consensus 347 ~~~~~~~s~~wli~~~~l~~igE~~i~~~~~--~~~~~~aP~~~~g~~~gl~~l~~~i-G~~l~~~l~~~~~~~t~~~~~ 423 (469)
+ ..|. .+...++..+|-...-|..+ -.+.+.+|++.-|++.|+-.++..+ |..+++...+.+.+.
T Consensus 342 ~----~~~~--~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~------ 409 (448)
T COG2271 342 P----NGSY--LLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT------ 409 (448)
T ss_pred C----CccH--HHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec------
Confidence 0 1122 22233444455444444432 2456789999999999999999888 888888888877653
Q ss_pred CCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012167 424 TPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAAR 461 (469)
Q Consensus 424 ~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~ 461 (469)
.+|- ..|.++.+.++++.++++.+.+.
T Consensus 410 ~gW~-----------g~Fi~~~~~a~l~~lll~~~~~~ 436 (448)
T COG2271 410 WGWD-----------GGFIVLSIAALLAILLLLPVWNA 436 (448)
T ss_pred CCCc-----------chHHHHHHHHHHHHHHHHHHHhh
Confidence 2462 35555666666666655555443
No 64
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.04 E-value=1.1e-08 Score=102.87 Aligned_cols=86 Identities=10% Similarity=0.153 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHH-HHHHhhcccCCcchhHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAV-TFVVWIEDNKGWQWGFGI 114 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~-~~~~~l~~~~g~~~~F~i 114 (469)
+.+.+++++.+.+++.|...|...+++.|.++++ +|.+++++...+.++|..+++ .+++.+.+..+|+..|.+
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRS------ERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIV 155 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHh------hheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 4678888999999999999999999999999864 366788889999999999999 577778888899999998
Q ss_pred HHHHHHHHHHHHH
Q 012167 115 STATILLSIPIFL 127 (469)
Q Consensus 115 ~~v~~~i~~ii~~ 127 (469)
.++..++..++.+
T Consensus 156 ~~~~~~~~~~~~~ 168 (379)
T TIGR00881 156 PGIIAIIVSLICF 168 (379)
T ss_pred HHHHHHHHHHHHh
Confidence 8876655544433
No 65
>PRK11043 putative transporter; Provisional
Probab=99.03 E-value=1.1e-07 Score=97.56 Aligned_cols=85 Identities=20% Similarity=0.232 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
+.+.+++++.+.++|.+...+...+++.|.++++ ++.+.++......++|..++|.+++++.+++||+..|.+.
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~ 166 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQ------KANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATL 166 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 4667788888889998888888888999988754 3556788888889999999999999999999999999988
Q ss_pred HHHHHHHHHHH
Q 012167 116 TATILLSIPIF 126 (469)
Q Consensus 116 ~v~~~i~~ii~ 126 (469)
++..++..+..
T Consensus 167 ~~~~~~~~~~~ 177 (401)
T PRK11043 167 FAITLLLILPT 177 (401)
T ss_pred HHHHHHHHHHH
Confidence 77766655443
No 66
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.03 E-value=1.9e-07 Score=95.42 Aligned_cols=84 Identities=15% Similarity=0.125 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHH
Q 012167 37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIST 116 (469)
Q Consensus 37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~ 116 (469)
.+.++++..+.+++.+...+...+++.|.++++ +|.+++++.+...++|..++|.+++++.+..||+..|.+.+
T Consensus 91 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~ 164 (392)
T PRK10473 91 SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDR------RRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMA 164 (392)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHH
Confidence 566777888899999998999999999988754 46788999999999999999999999988899999999887
Q ss_pred HHHHHHHHHH
Q 012167 117 ATILLSIPIF 126 (469)
Q Consensus 117 v~~~i~~ii~ 126 (469)
+..++..++.
T Consensus 165 ~~~~i~~~~~ 174 (392)
T PRK10473 165 AMGILVLLLS 174 (392)
T ss_pred HHHHHHHHHH
Confidence 7766555443
No 67
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.02 E-value=3.3e-08 Score=104.29 Aligned_cols=78 Identities=23% Similarity=0.299 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
+.+.++++..+.+++.|+..+...+++.|.++++ +|..++++++.+.++|.++++.+.+++.++++|++.|.+.
T Consensus 107 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~ 180 (496)
T PRK03893 107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKH------LRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIG 180 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 4677888899999999999999999999999854 4667889999999999999999999999999999999875
Q ss_pred HHHH
Q 012167 116 TATI 119 (469)
Q Consensus 116 ~v~~ 119 (469)
++..
T Consensus 181 ~~~~ 184 (496)
T PRK03893 181 ILPI 184 (496)
T ss_pred HHHH
Confidence 4443
No 68
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.01 E-value=7.6e-08 Score=99.96 Aligned_cols=310 Identities=11% Similarity=0.098 Sum_probs=181.5
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccC-------Cc
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK-------GW 108 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~-------g~ 108 (469)
+...+++...+..++...+.-+..+++.|..++++ +|.+..++...+.++|.++...+.+.+.+.. +|
T Consensus 102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~ 176 (428)
T PF13347_consen 102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGY 176 (428)
T ss_pred HHHHHHHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHH
Confidence 44555777777899999999999999999987653 3667778888888888876655555543221 57
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCcc-ccccc
Q 012167 109 QWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRD-EGNSN 187 (469)
Q Consensus 109 ~~~F~i~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~a~~ 187 (469)
++.+.+.++..++..++..+.-|. ++++++++ ++ ..++ +..+.
T Consensus 177 ~~~~~v~~iv~~v~~~i~~~~~ke-~~~~~~~~--------------~~---------------------~~~~~~~~~~ 220 (428)
T PF13347_consen 177 RWMALVLAIVGLVFFLITFFFVKE-RSVEVTEQ--------------EK---------------------KISLRDSLRS 220 (428)
T ss_pred HHHHHHHHHHHHHHhhhhhheeee-cccccccc--------------cc---------------------ccccccchhh
Confidence 777777777666666555444332 00000000 00 0000 00000
Q ss_pred cCCCCCCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHH-cccCCC
Q 012167 188 VKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAAT-MNTKLG 266 (469)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~-~d~~~~ 266 (469)
.+ ++ |.+ ..++....+.+....-..+......+. +..+ .
T Consensus 221 ------------------------------~~-----~n-r~~---~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~ 260 (428)
T PF13347_consen 221 ------------------------------LF-----RN-RPF---RILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-G 260 (428)
T ss_pred ------------------------------hc-----cc-chH---HHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-h
Confidence 00 00 111 123333334444444333333333332 2211 0
Q ss_pred CcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 012167 267 SLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVN 346 (469)
Q Consensus 267 g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~ 346 (469)
-.+.+..+..+..++..|++.++. ||.+ | .+-+..|.++.+++.++..++.
T Consensus 261 ----~~~~~~~~~~~~~~v~~~~~~~l~----~r~g-k------~~~~~~~~~~~~~~~~~~~~~~-------------- 311 (428)
T PF13347_consen 261 ----LISIFMLIFFVASIVGSPLWGRLS----KRFG-K------KKVYIIGLLLAALGFLLLFFLG-------------- 311 (428)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHH----HHcc-c------eeehhhhHHHHHHHHHHHHHHH--------------
Confidence 122333344455556666665554 4431 1 2345678888888888776663
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccC-------cchhhHHHHHHHHHHHHHHHHHHHhHhhhccccc
Q 012167 347 SSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAP-------LSMRSLATSLSWASLAMGYYFSTVLVSIVNNITS 419 (469)
Q Consensus 347 ~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP-------~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~ 419 (469)
+.+.+++.+..++.+++-....+...++..+..+ ++..|+++|++.+...+|..+++.+.+.+-...+
T Consensus 312 -----~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 312 -----PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred -----hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 1467888999999999999999999999999887 4567999999999999999999988887765443
Q ss_pred cCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 012167 420 TYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYS 465 (469)
Q Consensus 420 ~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~~ 465 (469)
.+.+ ..+-++......-.+.+.+..+..++-+++.++|+-.
T Consensus 387 y~~~-----~~~q~~~~~~~i~~~~~~~p~~~~~~~~i~~~~y~l~ 427 (428)
T PF13347_consen 387 YDAN-----AAVQSASALSGIRILFSIVPAIFLLLAIIFMRFYPLT 427 (428)
T ss_pred cCCC-----cCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 2110 0022233344444455555555555555666777643
No 69
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.00 E-value=3.9e-07 Score=95.45 Aligned_cols=331 Identities=10% Similarity=0.022 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh--cccC---------
Q 012167 38 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWI--EDNK--------- 106 (469)
Q Consensus 38 ~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l--~~~~--------- 106 (469)
+.+.+++.+.-++.....+...++++|..++++. +++.+++++.+..|+|+++|+.++++. .+.+
T Consensus 115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~----~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~ 190 (477)
T TIGR01301 115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR----RTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACG 190 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccc
Confidence 4556666667778888888999999999997632 335799999999999999999999875 2211
Q ss_pred ----CcchhHHHHHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCcc
Q 012167 107 ----GWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRD 182 (469)
Q Consensus 107 ----g~~~~F~i~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (469)
+++..|.+.++.++++.++..+.-|.+...++++.+.. . .. ..
T Consensus 191 ~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~------------~-~~--------------------~~ 237 (477)
T TIGR01301 191 VSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS------------E-AA--------------------PP 237 (477)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh------------h-cc--------------------cc
Confidence 56789999999998887776654333211000000000 0 00 00
Q ss_pred ccccccCCCCCCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHH-Hc
Q 012167 183 EGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAA-TM 261 (469)
Q Consensus 183 d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~-~~ 261 (469)
++. +. +..+ ...++.. .+--|.+.+++..-...-+=|..+-+..|.++-+.- +-
T Consensus 238 ~~~-----------~~-~~~~---------~~i~~~~----~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~ 292 (477)
T TIGR01301 238 SKH-----------GE-EAFF---------GELFGAF----KYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGG 292 (477)
T ss_pred ccc-----------ch-hhhH---------HHHHHHH----HHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCC
Confidence 000 00 0000 0000000 011123334444444444444455555555554321 10
Q ss_pred ccCCC-----CcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHH-HHHHHHHHHHHHHHHHHHHHH
Q 012167 262 NTKLG-----SLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRI-GTGLILSIVAMAVAALVEIKR 335 (469)
Q Consensus 262 d~~~~-----g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri-~~G~~l~~i~~~~~a~~~~~~ 335 (469)
|.+-. |.+. ..+-..+|.+... ++..++.++.||. ...++. .++.++.++|++...++..-.
T Consensus 293 ~~~~~~~y~~gvr~-G~~~l~~~s~~~~----i~s~~l~~l~~~~-------g~~k~~~~~s~~~~~~~l~~~~~i~~~~ 360 (477)
T TIGR01301 293 SVNQGAKYDDGVRA-GAFGLMLNSVVLG----ITSIGMEKLCRGW-------GAGKRLWGIVNIILAICLAATVLVTYVA 360 (477)
T ss_pred CCcchhHHHHHHHH-HHHHHHHHHHHHH----HHHHHHHHHHHHh-------ccchhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 10000 0000 1122233333333 3344444445542 222333 688889999998887764200
Q ss_pred H---hhhhhcCCCCCCCCcchh-HHHHHHHHHHHHHHHHHhhhhhHHHHhhccCc--chhhHHHHHHHHHHHHHHHHHHH
Q 012167 336 K---RVAVNSGLVNSSEPLPIT-FLWVALQYLFLGSADLFTLAGMMEFFFTDAPL--SMRSLATSLSWASLAMGYYFSTV 409 (469)
Q Consensus 336 ~---~~~~~~g~~~~~~~~~~s-~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~--~~~g~~~gl~~l~~~iG~~l~~~ 409 (469)
. .....++... .+.. .++.+..+.+.|++-......=++++.+..|+ +-.|.+||+.+++..+...+..+
T Consensus 361 ~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl 436 (477)
T TIGR01301 361 KNSRYYDGDGESLP----PPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSL 436 (477)
T ss_pred hccccccccccccC----cchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHH
Confidence 0 0000001111 1222 36677888999999999999999999999995 45699999999999999999887
Q ss_pred hHhhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012167 410 LVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAAR 461 (469)
Q Consensus 410 l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~ 461 (469)
..+.+.+..+ .+ -.+.+.+-++.++++++.-++..+|
T Consensus 437 ~~g~~~~~~g---------~~------~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 437 GSGPWDQLFG---------GG------NLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred HHHHHHHHcC---------CC------CeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 7777544221 11 1234555555666666655555444
No 70
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.99 E-value=1.9e-07 Score=96.60 Aligned_cols=86 Identities=10% Similarity=0.037 Sum_probs=71.0
Q ss_pred chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHH
Q 012167 35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGI 114 (469)
Q Consensus 35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i 114 (469)
.+.+.+++++++.++|.+..-+...+.+.|.++++ ++.+.++++..+.++|..+||.+++++.+..||++.|.+
T Consensus 102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~ 175 (413)
T PRK15403 102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQT------KGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI 175 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 34678889999999999876666677788888754 356778999999999999999999999998999999999
Q ss_pred HHHHHHHHHHHH
Q 012167 115 STATILLSIPIF 126 (469)
Q Consensus 115 ~~v~~~i~~ii~ 126 (469)
.++..+++.+..
T Consensus 176 ~~~~~~i~~~~~ 187 (413)
T PRK15403 176 IAVMGLIAFVGL 187 (413)
T ss_pred HHHHHHHHHHHH
Confidence 888776665543
No 71
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.99 E-value=2.7e-07 Score=94.89 Aligned_cols=84 Identities=14% Similarity=0.146 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhccc-CCcchhHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN-KGWQWGFGI 114 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~-~g~~~~F~i 114 (469)
+.+.+++...+.++..+...|...++..|.++++ +|.++.++..++.++|.++++.+++++.+. .||+..|.+
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~------~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i 166 (402)
T PRK11902 93 ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPE------ERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLL 166 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh------hhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHH
Confidence 3555666666678888999999999999998754 366788888999999999999999988885 599999999
Q ss_pred HHHHHHHHHHH
Q 012167 115 STATILLSIPI 125 (469)
Q Consensus 115 ~~v~~~i~~ii 125 (469)
.++..++..+.
T Consensus 167 ~a~~~l~~~l~ 177 (402)
T PRK11902 167 MAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHH
Confidence 88877655443
No 72
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.99 E-value=2.1e-07 Score=98.40 Aligned_cols=77 Identities=21% Similarity=0.244 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhc--------ccCCcc
Q 012167 38 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE--------DNKGWQ 109 (469)
Q Consensus 38 ~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~--------~~~g~~ 109 (469)
..+.+.+++.++|.|+..|+..++++++++++ +|..+.++...+.++|.++|+.+..++. .++||+
T Consensus 119 ~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~------~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR 192 (490)
T PRK10642 119 ILLLLCKMAQGFSVGGEYTGASIFVAEYSPDR------KRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWR 192 (490)
T ss_pred HHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHH
Confidence 35888999999999999999999999999865 3555777788888888888876655442 268999
Q ss_pred hhHHHHHHHHH
Q 012167 110 WGFGISTATIL 120 (469)
Q Consensus 110 ~~F~i~~v~~~ 120 (469)
+.|.+.++..+
T Consensus 193 ~~f~i~~~~~l 203 (490)
T PRK10642 193 IPFFIALPLGI 203 (490)
T ss_pred HHHHHHHHHHH
Confidence 99998665443
No 73
>PRK09848 glucuronide transporter; Provisional
Probab=98.97 E-value=2.7e-07 Score=96.38 Aligned_cols=91 Identities=10% Similarity=0.033 Sum_probs=70.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcc-
Q 012167 309 THLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLS- 387 (469)
Q Consensus 309 s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~- 387 (469)
+..+.+.+|.++.+++.+...+.. ..+.++.+...++.++|+.+..+...++..+.+|.+
T Consensus 292 g~~~~~~~g~~~~~i~~~~~~~~~-------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~ 352 (448)
T PRK09848 292 GKKNTFLIGALLGTCGYLLFFWVS-------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGE 352 (448)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcC-------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 334557778888777776554321 134566667788999999999999999999999864
Q ss_pred ------hhhHHHHHHHHHHHHHHHHHHHhHhhhcccc
Q 012167 388 ------MRSLATSLSWASLAMGYYFSTVLVSIVNNIT 418 (469)
Q Consensus 388 ------~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t 418 (469)
.+|.++|++.+...+|..+++.+.+.+-...
T Consensus 353 ~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~ 389 (448)
T PRK09848 353 YLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS 389 (448)
T ss_pred HhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5699999999999999999998887765544
No 74
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.97 E-value=4.1e-08 Score=103.16 Aligned_cols=84 Identities=10% Similarity=-0.049 Sum_probs=68.3
Q ss_pred chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccC---Ccchh
Q 012167 35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK---GWQWG 111 (469)
Q Consensus 35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~---g~~~~ 111 (469)
.+.+.+++.+.+.+++.|...|...+.+.++++++ +|..+++++..+.++|.++++.+..++.+.. +|+..
T Consensus 120 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~ 193 (467)
T PRK09556 120 VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRR------KRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGM 193 (467)
T ss_pred chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcc------ceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhH
Confidence 35778888899999999999999999999999875 3567788899999999999999888776643 68888
Q ss_pred HHHHHHHHHHHHH
Q 012167 112 FGISTATILLSIP 124 (469)
Q Consensus 112 F~i~~v~~~i~~i 124 (469)
|.+.++..++..+
T Consensus 194 f~~~g~~~~~~~i 206 (467)
T PRK09556 194 FIFPSIIALIIGF 206 (467)
T ss_pred HHHHHHHHHHHHH
Confidence 9887766654433
No 75
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.96 E-value=2.4e-07 Score=95.82 Aligned_cols=85 Identities=13% Similarity=0.165 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcc------cCCcc
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED------NKGWQ 109 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~------~~g~~ 109 (469)
+.+.+++++.+.++|.|...|...+.+.+.++++ +|..+.+++..+.++|..+++.+++++.+ ..||+
T Consensus 95 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr 168 (412)
T TIGR02332 95 GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAY------FRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQ 168 (412)
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchh
Confidence 3678889999999999999999999999999854 36678889999999999999999998863 46999
Q ss_pred hhHHHHHHHHHHHHHHH
Q 012167 110 WGFGISTATILLSIPIF 126 (469)
Q Consensus 110 ~~F~i~~v~~~i~~ii~ 126 (469)
+.|.+.++..++..++.
T Consensus 169 ~~f~~~~~~~l~~~~~~ 185 (412)
T TIGR02332 169 WLFLLEGFPSVILGVMT 185 (412)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999777665544433
No 76
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.96 E-value=3.8e-07 Score=93.89 Aligned_cols=73 Identities=11% Similarity=-0.015 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHH-HHHHHHHHhhcccCCcchhHHHH
Q 012167 37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGA-LIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa-~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
.+.+++...+.++|.+..-+...+.+.+.++++ +|.++.+++..+.++|. .+++.+++++.+.+||+..+...
T Consensus 105 ~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~ 178 (402)
T TIGR00897 105 YPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQD------NLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSA 178 (402)
T ss_pred HHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 566677778888888887777777788877653 46788899999999996 68999999998888966555443
No 77
>PRK15075 citrate-proton symporter; Provisional
Probab=98.94 E-value=3.2e-07 Score=95.47 Aligned_cols=73 Identities=14% Similarity=0.193 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh--------cccCCcch
Q 012167 39 MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWI--------EDNKGWQW 110 (469)
Q Consensus 39 ~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l--------~~~~g~~~ 110 (469)
.+++++++.++|.|..-|+..++++|.++++ +|.++.+++..+.++|..+++.+++.+ .+++||+.
T Consensus 119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~------~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~ 192 (434)
T PRK15075 119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPG------RKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRI 192 (434)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHhhCCcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence 5688899999999999999999999999865 366788888888888888877777665 25689999
Q ss_pred hHHHHHH
Q 012167 111 GFGISTA 117 (469)
Q Consensus 111 ~F~i~~v 117 (469)
.|.+..+
T Consensus 193 ~f~~~~~ 199 (434)
T PRK15075 193 PFLIGCL 199 (434)
T ss_pred HHHHHHH
Confidence 9987543
No 78
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.93 E-value=1.6e-07 Score=97.80 Aligned_cols=83 Identities=10% Similarity=0.124 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh-hcccCCcchhHHHH
Q 012167 37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVW-IEDNKGWQWGFGIS 115 (469)
Q Consensus 37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~-l~~~~g~~~~F~i~ 115 (469)
...+++.+.+.+++.|...|.....+.|.++++ +|..++++++.+.++|..+++.+.+. +.+..+|+.+|.+.
T Consensus 118 ~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~ 191 (438)
T TIGR00712 118 IAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQS------ERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFP 191 (438)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcc------cchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 556677788899999999898899999998865 36788999999999999999877765 44557999999998
Q ss_pred HHHHHHHHHH
Q 012167 116 TATILLSIPI 125 (469)
Q Consensus 116 ~v~~~i~~ii 125 (469)
++..++..++
T Consensus 192 ~~~~~i~~~~ 201 (438)
T TIGR00712 192 AICAIIVALF 201 (438)
T ss_pred HHHHHHHHHH
Confidence 8777665443
No 79
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.92 E-value=1.9e-07 Score=94.14 Aligned_cols=80 Identities=21% Similarity=0.330 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccC--CcchhHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK--GWQWGFG 113 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~--g~~~~F~ 113 (469)
+.+.+++++.+.++|.|...+...+...|.+++ +|.++.++++.+.++|..+++.+++.+.+.. +|+..|.
T Consensus 86 ~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~ 158 (355)
T TIGR00896 86 GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-------RVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALA 158 (355)
T ss_pred cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 356777888899999999888888888887753 3567889999999999999999999887765 3888888
Q ss_pred HHHHHHHHH
Q 012167 114 ISTATILLS 122 (469)
Q Consensus 114 i~~v~~~i~ 122 (469)
+.++..++.
T Consensus 159 ~~~~~~~~~ 167 (355)
T TIGR00896 159 WWALPALLA 167 (355)
T ss_pred HHHHHHHHH
Confidence 766554443
No 80
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.92 E-value=1.3e-07 Score=96.89 Aligned_cols=104 Identities=12% Similarity=0.077 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHH
Q 012167 313 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLA 392 (469)
Q Consensus 313 ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~ 392 (469)
-+.+|.++.++++...+.. .+++++++..++.+++.........+.+.+..|++.+++.
T Consensus 286 ~l~~~~~l~~l~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~ 344 (396)
T TIGR00882 286 ALLIAGTIMSVRIIGSSFA---------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATI 344 (396)
T ss_pred hHHHHHHHHHHHHHHHHhc---------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEe
Confidence 3567777777666543322 2466777778899988877777777888888899998887
Q ss_pred HHH-HHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHH
Q 012167 393 TSL-SWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLH 454 (469)
Q Consensus 393 ~gl-~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~ 454 (469)
.+. +.....+|+.+++.+.+.+.+.. .+...|.+.+++.++..++
T Consensus 345 ~~~~~~~~~~lg~~~~~~l~G~l~~~~-----------------G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 345 YLIGFQFAKQLAMIFLSTLAGNMYDSI-----------------GFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred ehHHHHHHHHHHHHHHHHhHHHHHHhc-----------------ccHHHHHHHHHHHHHHHHH
Confidence 665 56778899999998888876522 1244666667766665544
No 81
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.90 E-value=2.3e-07 Score=96.21 Aligned_cols=147 Identities=10% Similarity=0.101 Sum_probs=95.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhH
Q 012167 276 PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITF 355 (469)
Q Consensus 276 ~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~ 355 (469)
.+++.+..++...+.+++ .+| .+..+-+.++.++.++++....... ....+.
T Consensus 257 ~~~~~i~~i~~~~~~g~l----~dr-------~g~r~~l~~~~~~~~v~~~l~~~~~-----------------~~~~~~ 308 (418)
T TIGR00889 257 MSLSQFSEIFFILTIPFF----LKR-------FGIKKVMLLSLVAWALRFGFFAYGD-----------------PEYFGY 308 (418)
T ss_pred HHHHHHHHHHHHHHHHHH----HHH-------hCcHHHHHHHHHHHHHHHHHHHHcC-----------------cchhhH
Confidence 344444444444444444 344 2223346677777777665554421 001233
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHH-HHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCc
Q 012167 356 LWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSW-ASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNH 434 (469)
Q Consensus 356 ~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~-l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~ 434 (469)
+.++...++.++++.+..+....++.+.+|++.||.++|+.+ ...++|+.+|+.+.+.+.+.++. ++.
T Consensus 309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~---------~~~-- 377 (418)
T TIGR00889 309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFA---------YGT-- 377 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc---------ccC--
Confidence 445567789999999999999999999999999999999997 56789999999999887653220 000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012167 435 YHLERFYWLMCILGGLNFLHFLFWAAR 461 (469)
Q Consensus 435 ~~l~~~f~~la~l~l~~~l~~~~~~~~ 461 (469)
.+++..|...++++++..++++++.|+
T Consensus 378 ~~~~~~f~~~~~~~~i~~~l~~~~~~~ 404 (418)
T TIGR00889 378 FDWQTMWLFFAGYIAILAVLFMIFFKY 404 (418)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 013456777777777777666666553
No 82
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.87 E-value=8.1e-07 Score=94.28 Aligned_cols=83 Identities=17% Similarity=0.175 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcc------------
Q 012167 37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED------------ 104 (469)
Q Consensus 37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~------------ 104 (469)
...+++++++.++|.|+..|....++.+.++++ +|..+.++++.+.++|.++++.++.++..
T Consensus 115 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~------~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 188 (502)
T TIGR00887 115 MATLCFWRFWLGVGIGGDYPLSAIITSEFATKK------WRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADE 188 (502)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 578999999999999999999999999999975 46778899999999999999888765421
Q ss_pred -----------cCCcchhHHHHHHHHHHHHHH
Q 012167 105 -----------NKGWQWGFGISTATILLSIPI 125 (469)
Q Consensus 105 -----------~~g~~~~F~i~~v~~~i~~ii 125 (469)
..+|++.|.+.++..++..+.
T Consensus 189 ~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~ 220 (502)
T TIGR00887 189 ASCTGSCVPAVDYMWRILIGFGAVPALLALYF 220 (502)
T ss_pred ccccccccchhcccHHHHHHHHHHHHHHHHHH
Confidence 247999998877666544433
No 83
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.86 E-value=6.9e-09 Score=105.06 Aligned_cols=86 Identities=13% Similarity=0.201 Sum_probs=77.9
Q ss_pred chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCC-cchhHH
Q 012167 35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQWGFG 113 (469)
Q Consensus 35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g-~~~~F~ 113 (469)
...|.+.+.+.++++|.+.+.|..+++++|.|+++ +|.+.|.+|||++++|+.+|.+.++++.+..+ ||++|.
T Consensus 119 ~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~------~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~ 192 (493)
T KOG1330|consen 119 NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDD------KRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFR 192 (493)
T ss_pred HHHHHHHHHHHHhccchhhhcccchhHhhhcCcch------hhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEE
Confidence 56899999999999999999999999999999976 58899999999999999999999999988776 999999
Q ss_pred HHHHHHHHHHHHH
Q 012167 114 ISTATILLSIPIF 126 (469)
Q Consensus 114 i~~v~~~i~~ii~ 126 (469)
..++.+++..++.
T Consensus 193 ~~avl~vi~~~L~ 205 (493)
T KOG1330|consen 193 GSAVLGVIVGLLV 205 (493)
T ss_pred eehHHHHHHHHHH
Confidence 9999887765543
No 84
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.86 E-value=7.9e-07 Score=88.43 Aligned_cols=88 Identities=13% Similarity=0.049 Sum_probs=69.1
Q ss_pred CCchhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhccc-------
Q 012167 33 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN------- 105 (469)
Q Consensus 33 ~~~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~------- 105 (469)
...+.+.+.+++.+++.|.+..++..++++++.-++++ +.+..++.-.+..+|+++||++++.+..+
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~ 79 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSM 79 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhh
Confidence 34578999999999999999999999999999887652 45568888889999999999999976632
Q ss_pred ---------CCcchhHHHHHHHHHHHHHHH
Q 012167 106 ---------KGWQWGFGISTATILLSIPIF 126 (469)
Q Consensus 106 ---------~g~~~~F~i~~v~~~i~~ii~ 126 (469)
..|++.|.+.++...+..+++
T Consensus 80 ~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~ 109 (310)
T TIGR01272 80 QVATANAEAAKVHTPYLLLAGALAVLAIIF 109 (310)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888885555544433333
No 85
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.84 E-value=1.3e-06 Score=89.46 Aligned_cols=56 Identities=9% Similarity=0.024 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHhhccCc-chhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 361 QYLFLGSADLFTLAGMMEFFFTDAPL-SMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 361 ~~~l~~igE~~i~~~~~~~~~~~aP~-~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
..++.+++..+..+.......+.+++ +.+|+.+++.....++|..+++.+.+.+.+
T Consensus 309 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~ 365 (390)
T TIGR02718 309 CSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD 365 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556667777777777776 899999999999999999999999988765
No 86
>PRK09669 putative symporter YagG; Provisional
Probab=98.83 E-value=1.6e-06 Score=90.55 Aligned_cols=66 Identities=9% Similarity=0.060 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccC-------cchhhHHHHHHHHHHHHHHHHHHHhHhhhccccc
Q 012167 354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAP-------LSMRSLATSLSWASLAMGYYFSTVLVSIVNNITS 419 (469)
Q Consensus 354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP-------~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~ 419 (469)
+.+.++...++.++++....+...+++.+.++ ++..|...|++.+...+|..+|+.+++.+.+..+
T Consensus 318 ~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 318 NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34555666789999999999999999999886 4567889999999999999999988887766543
No 87
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.80 E-value=6.7e-07 Score=94.31 Aligned_cols=83 Identities=6% Similarity=0.011 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcc---------cC
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED---------NK 106 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~---------~~ 106 (469)
+.+.+++.+++.++|.+..-+ ....+++.++++ +|..+.++.+...|+|+.+++.+.+.+.. ..
T Consensus 123 s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~------~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 195 (476)
T PLN00028 123 SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGK------IVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFT 195 (476)
T ss_pred CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChh------heeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 356677788888888887644 455678888754 36678888888888888888777665532 25
Q ss_pred CcchhHHHHHHHHHHHHHH
Q 012167 107 GWQWGFGISTATILLSIPI 125 (469)
Q Consensus 107 g~~~~F~i~~v~~~i~~ii 125 (469)
||++.|.+.++..++..+.
T Consensus 196 gWr~~f~i~g~l~l~~~l~ 214 (476)
T PLN00028 196 AWRIAFFVPGLLHIIMGIL 214 (476)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 8999999988777655443
No 88
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.76 E-value=3.2e-07 Score=96.56 Aligned_cols=84 Identities=15% Similarity=0.082 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHHHH
Q 012167 39 MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTAT 118 (469)
Q Consensus 39 ~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~v~ 118 (469)
...+.+.+++++.+.......++..|+.+ +++ +......++.|.+.++|.++|+.++|++.+.++|+..|.+.++.
T Consensus 122 ~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l 197 (468)
T TIGR00788 122 VAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAAL 197 (468)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 33346788999999999999999999998 332 13445677899999999999999999999999999999998888
Q ss_pred HHHHHHHH
Q 012167 119 ILLSIPIF 126 (469)
Q Consensus 119 ~~i~~ii~ 126 (469)
.++..+..
T Consensus 198 ~ll~~~~~ 205 (468)
T TIGR00788 198 LLLQLFVS 205 (468)
T ss_pred HHHHHHHH
Confidence 87764433
No 89
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.72 E-value=5e-06 Score=87.61 Aligned_cols=65 Identities=12% Similarity=0.150 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccC-------cchhhHHHHHHHHHHHHHHHHHHHhHhhhcccc
Q 012167 354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAP-------LSMRSLATSLSWASLAMGYYFSTVLVSIVNNIT 418 (469)
Q Consensus 354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP-------~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t 418 (469)
+.++++...++.+++.....+...++..+.+| ++..|.+.|++.+..-+|..+++.+.+.+.+..
T Consensus 323 ~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~ 394 (473)
T PRK10429 323 NALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLI 394 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556666788999999999999999999987 566788999999999999999988888776544
No 90
>PRK10133 L-fucose transporter; Provisional
Probab=98.59 E-value=1.1e-05 Score=84.20 Aligned_cols=63 Identities=25% Similarity=0.291 Sum_probs=49.4
Q ss_pred chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012167 35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE 103 (469)
Q Consensus 35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~ 103 (469)
.+.+.+++++.+.++|.|...+..++++.|..+++ ++....+.+.....+|..+|+.+++.+.
T Consensus 115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~------~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChh------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778899999999999999999999999864332 2333467788888899999998877653
No 91
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.56 E-value=2.3e-06 Score=93.10 Aligned_cols=253 Identities=11% Similarity=-0.027 Sum_probs=183.4
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcch-----
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQW----- 110 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~----- 110 (469)
+.....+.++.++++.+|.+++.+++.+++.+..++ +++++.+++|||..+.+.+.+.+........-.+..
T Consensus 81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~---~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~ 157 (654)
T TIGR00926 81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE---RQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQ 157 (654)
T ss_pred cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence 377778888899999999999999999999988753 556789999999999999875554444443323332
Q ss_pred --hHHHHHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCcccccccc
Q 012167 111 --GFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNV 188 (469)
Q Consensus 111 --~F~i~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~ 188 (469)
.++..++.+++.++.++.....++..++.+.+...+.++........+.. . ..
T Consensus 158 ~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~---------------------~---~~- 212 (654)
T TIGR00926 158 DCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKR---------------------F---ST- 212 (654)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHh---------------------h---cc-
Confidence 34477778888888888887777666665544444555554443332100 0 00
Q ss_pred CCCCCCCCCchhHHHHhhhccCCCCCCccc--cCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCC
Q 012167 189 KEKVPSQKPTEDIKFLNRALRNNPAYPIVQ--CTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLG 266 (469)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~ 266 (469)
.+ +.....|-. .....+++++...+++.++...+.+++.+.|.......|...+++..+
T Consensus 213 ~~-------------------~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~ 273 (654)
T TIGR00926 213 RS-------------------EHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG 273 (654)
T ss_pred CC-------------------cccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC
Confidence 00 000011111 122334567889999999999999999999999889999999998866
Q ss_pred CcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012167 267 SLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRV 338 (469)
Q Consensus 267 g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~ 338 (469)
.+...+...+.++++-.++.+++...+.+|+.++..++ ..+++++.-+.+.++++.+.+++++....+.
T Consensus 274 ~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ve~~~ 342 (654)
T TIGR00926 274 DVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAALVQLKV 342 (654)
T ss_pred ccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54445567889999999999999999989999997443 5788889999999999999999998766554
No 92
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.54 E-value=1.3e-05 Score=82.82 Aligned_cols=86 Identities=16% Similarity=0.142 Sum_probs=66.5
Q ss_pred chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcc----------
Q 012167 35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED---------- 104 (469)
Q Consensus 35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~---------- 104 (469)
.+.+.+.+++.+.++|.|...+..++++.+..+++ ++.+..++.....++|+.+|+.+++.+..
T Consensus 92 ~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~ 165 (410)
T TIGR00885 92 MNYTLFLVGLFILTAGLGFLETAANPYILVMGPES------TATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDV 165 (410)
T ss_pred ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh
Confidence 34778889999999999999999999998876543 24456778889999999999999887732
Q ss_pred ----------------cCCcchhHHHHHHHHHHHHHHH
Q 012167 105 ----------------NKGWQWGFGISTATILLSIPIF 126 (469)
Q Consensus 105 ----------------~~g~~~~F~i~~v~~~i~~ii~ 126 (469)
..+|+..|.+.++..++..+++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 166 LDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2469999988777555444333
No 93
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=2.3e-06 Score=85.38 Aligned_cols=89 Identities=20% Similarity=0.183 Sum_probs=79.8
Q ss_pred chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHH
Q 012167 35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGI 114 (469)
Q Consensus 35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i 114 (469)
.+.+.+++++.+=++|.+....+-.+|++|.|+++. +|.++.++.--.+.+|.++||.++|.+.|..|+++-|++
T Consensus 157 ~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~-----er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlV 231 (464)
T KOG3764|consen 157 NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN-----ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLV 231 (464)
T ss_pred chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch-----hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHH
Confidence 357799999999999999999999999999999864 477899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 012167 115 STATILLSIPIFLL 128 (469)
Q Consensus 115 ~~v~~~i~~ii~~~ 128 (469)
.++.+++...+-++
T Consensus 232 L~~v~Lld~~L~l~ 245 (464)
T KOG3764|consen 232 LAIVLLLDGALQLL 245 (464)
T ss_pred HHHHHHHHHHHHHh
Confidence 99988887665443
No 94
>PRK11462 putative transporter; Provisional
Probab=98.48 E-value=8.5e-05 Score=78.06 Aligned_cols=84 Identities=10% Similarity=0.181 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhccc-------CCcc
Q 012167 37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN-------KGWQ 109 (469)
Q Consensus 37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~-------~g~~ 109 (469)
...+++...+..++...+.-...++.++..++. + +|.+..++...+.++|.++++.++..+.+. .||.
T Consensus 109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~--~---eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~ 183 (460)
T PRK11462 109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDP--T---QRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQ 183 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCH--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence 344555555667788888888889999887653 2 367788889999999988887765443322 2466
Q ss_pred hhHHHHHHHHHHHHHH
Q 012167 110 WGFGISTATILLSIPI 125 (469)
Q Consensus 110 ~~F~i~~v~~~i~~ii 125 (469)
....+.++..++...+
T Consensus 184 ~~~~i~~ii~~i~~~i 199 (460)
T PRK11462 184 GGIAVLSVVAFMMLAF 199 (460)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555554444433
No 95
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.46 E-value=3.9e-06 Score=84.51 Aligned_cols=78 Identities=14% Similarity=0.181 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcc----------c
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED----------N 105 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~----------~ 105 (469)
+.+.++++..+.+++.+.+ +...++++|.++++ +|..+.+++..+.|+|..+++.+++.+.. +
T Consensus 90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 162 (366)
T TIGR00886 90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKK------IQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH 162 (366)
T ss_pred hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHh------hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 4677888889999987665 45678899998754 36678888888888998888888776654 3
Q ss_pred CCcchhH-HHHHHHHH
Q 012167 106 KGWQWGF-GISTATIL 120 (469)
Q Consensus 106 ~g~~~~F-~i~~v~~~ 120 (469)
.+|++.| .+.++..+
T Consensus 163 ~~w~~~~~~~~~~~~~ 178 (366)
T TIGR00886 163 LAWGWAFVIVPAGILL 178 (366)
T ss_pred ccccchhHHHHHHHHH
Confidence 4899999 44344443
No 96
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.42 E-value=6.3e-05 Score=79.23 Aligned_cols=85 Identities=16% Similarity=0.171 Sum_probs=72.3
Q ss_pred chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh------cccCCc
Q 012167 35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWI------EDNKGW 108 (469)
Q Consensus 35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l------~~~~g~ 108 (469)
.+.+.+.+-+.+.|+-++..-|+....++.+|.++ ++..-++++|.+.++|..+|.+++..+ ....||
T Consensus 132 ~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~------e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW 205 (495)
T KOG2533|consen 132 HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKS------ERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW 205 (495)
T ss_pred hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChh------hhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc
Confidence 45788888899999999999999999999999976 245567889999999999999998886 345799
Q ss_pred chhHHHHHHHHHHHHHH
Q 012167 109 QWGFGISTATILLSIPI 125 (469)
Q Consensus 109 ~~~F~i~~v~~~i~~ii 125 (469)
++.|.+.++++++..++
T Consensus 206 ~~~FiI~G~i~~~~gi~ 222 (495)
T KOG2533|consen 206 RWLFIIEGVITLVLGIV 222 (495)
T ss_pred eeehhHHHHHHHHHHhe
Confidence 99999999888765544
No 97
>PRK03545 putative arabinose transporter; Provisional
Probab=98.42 E-value=7.1e-06 Score=83.94 Aligned_cols=136 Identities=11% Similarity=0.091 Sum_probs=98.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.+...+...++.++...+. +| .+..+-+..+.++.+++.+.+++.
T Consensus 47 g~~~~~~~~~~~~~~~~~g~l~----dr-------~g~r~~~~~~~~~~~~~~~~~~~~--------------------- 94 (390)
T PRK03545 47 GLMLTIYAWVVALMSLPLMLLT----SN-------VERRKLLIGLFVLFIASHVLSALA--------------------- 94 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----cC-------CChHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 3444455555555666665553 33 233345677888888887776654
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 432 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~ 432 (469)
.++++++...+++++++....|....++.+..|++.|+.++|++....++|..+++.+++.+.+. -+|
T Consensus 95 ~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~------~gw------ 162 (390)
T PRK03545 95 WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY------LGW------ 162 (390)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH------hcH------
Confidence 25677778889999999999999999999999999999999999999999999999988876531 134
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHH
Q 012167 433 NHYHLERFYWLMCILGGLNFLHFLF 457 (469)
Q Consensus 433 n~~~l~~~f~~la~l~l~~~l~~~~ 457 (469)
...|++.++++++..+....
T Consensus 163 -----~~~f~~~~~~~~l~~~~~~~ 182 (390)
T PRK03545 163 -----RTTFLAIGGGALITLLLLIK 182 (390)
T ss_pred -----HHHHHHHHHHHHHHHHHHHH
Confidence 44677777776666544433
No 98
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.39 E-value=0.00016 Score=73.15 Aligned_cols=88 Identities=15% Similarity=0.110 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHH
Q 012167 313 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLA 392 (469)
Q Consensus 313 ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~ 392 (469)
--.+|....++++....+.. ..-+.+.+.+..+++|+|--+......+..-++++++..|+.
T Consensus 277 ~a~~G~~~~~~~f~lii~a~------------------~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~ 338 (403)
T PF03209_consen 277 TAALGCLLGALAFALIILAG------------------PLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLF 338 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------hcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHH
Confidence 34467777777776544432 012456678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhcccc
Q 012167 393 TSLSWASLAMGYYFSTVLVSIVNNIT 418 (469)
Q Consensus 393 ~gl~~l~~~iG~~l~~~l~~~~~~~t 418 (469)
+|+|...++++..++..+++.+.++.
T Consensus 339 mG~WGaaQA~A~Glg~~~GG~~~D~~ 364 (403)
T PF03209_consen 339 MGAWGAAQAIARGLGTFLGGALRDLV 364 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998887754
No 99
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.36 E-value=7e-07 Score=90.71 Aligned_cols=144 Identities=17% Similarity=0.223 Sum_probs=112.3
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+.+|.+--+.-+++.|+.+.+-+++-| .+-|++|.++-+++.+..++..
T Consensus 71 Gll~~vf~v~~~i~sPl~gyLadryNR-----------~~v~~vG~~iW~~Av~~~~fs~-------------------- 119 (493)
T KOG1330|consen 71 GLLQTVFIVVFMIASPLFGYLADRYNR-----------KRVIAVGIFIWTLAVFASGFSN-------------------- 119 (493)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCc-----------ceEEeeHHHHHHHHHHHHHHHH--------------------
Confidence 455555555566788998888543332 3457899999999888877652
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 432 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~ 432 (469)
..|.+++...+.|+||...+|...+++++..|...||++++++++..-+|+.+|.+.+..+...+. .|
T Consensus 120 -~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-----~W------ 187 (493)
T KOG1330|consen 120 -HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-----WW------ 187 (493)
T ss_pred -HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-----ce------
Confidence 345566899999999999999999999999999999999999999999999999888888876542 24
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012167 433 NHYHLERFYWLMCILGGLNFLHFLFWAARYKY 464 (469)
Q Consensus 433 n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~ 464 (469)
.+-|++.++++++.+++..++.+.=++
T Consensus 188 -----r~af~~~avl~vi~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 188 -----RWAFRGSAVLGVIVGLLVFLFVREPER 214 (493)
T ss_pred -----EEEEEeehHHHHHHHHHHHhhccCccc
Confidence 346788899999888776666554443
No 100
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.36 E-value=1.7e-05 Score=82.03 Aligned_cols=143 Identities=13% Similarity=0.137 Sum_probs=100.6
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.+...+...+..++.+++.+++.+| +-+.+++++.+++.+..++.
T Consensus 46 g~~~s~~~~~~~~~~~~~g~l~dr~G~r-----------~~~~~~~~~~~~~~~~~~~~--------------------- 93 (412)
T TIGR02332 46 GLAATLFYAAYVICGIPSNIMLAIIGAR-----------RWIAGIMVLWGIASTATMFA--------------------- 93 (412)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhChH-----------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence 3445555555666666777665544333 23567888888877777654
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 432 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~ 432 (469)
.+.++++...++.|++|....|....++.+..|++.|+..+|++....++|..+++.+++.+.+.....+..+|
T Consensus 94 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gw------ 167 (412)
T TIGR02332 94 TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGW------ 167 (412)
T ss_pred cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccch------
Confidence 24667888999999999999999999999999999999999999999999999999988776431100000135
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHH
Q 012167 433 NHYHLERFYWLMCILGGLNFLHFLFW 458 (469)
Q Consensus 433 n~~~l~~~f~~la~l~l~~~l~~~~~ 458 (469)
...|++.++++++..++.+++
T Consensus 168 -----r~~f~~~~~~~l~~~~~~~~~ 188 (412)
T TIGR02332 168 -----QWLFLLEGFPSVILGVMTWFW 188 (412)
T ss_pred -----hHHHHHHHHHHHHHHHHHhhc
Confidence 456666677766655544443
No 101
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.30 E-value=0.0007 Score=71.33 Aligned_cols=82 Identities=10% Similarity=0.088 Sum_probs=62.9
Q ss_pred HHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHHHHHH
Q 012167 363 LFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYW 442 (469)
Q Consensus 363 ~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~ 442 (469)
++.|+.---..+..=++..++.|++..+...|+|.++.-..+.+||++.+.+.+.|+. ..+-++
T Consensus 388 ~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~----------------~r~g~~ 451 (477)
T PF11700_consen 388 VLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS----------------QRYGFL 451 (477)
T ss_pred HHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------------chhHHH
Confidence 4566666667788889999999999999999999999999999999999999876631 122355
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 012167 443 LMCILGGLNFLHFLFWAA 460 (469)
Q Consensus 443 ~la~l~l~~~l~~~~~~~ 460 (469)
.+.++.++.++++..+..
T Consensus 452 ~l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 452 FLLVLFLIGLILLFFVDV 469 (477)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 566666666666655433
No 102
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.28 E-value=0.00038 Score=72.72 Aligned_cols=60 Identities=5% Similarity=-0.083 Sum_probs=47.7
Q ss_pred chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 012167 35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVW 101 (469)
Q Consensus 35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~ 101 (469)
.+.+.+++..++.++| |...+...+.+.++|+++ +|..+.+++....|+|..+++++++.
T Consensus 126 ~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~------~rG~A~Gi~~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 126 TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKA------KQGSALGINGGLGNLGVSVMQLVAPL 185 (462)
T ss_pred CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHh------HhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4578899999999998 667788999999999865 36678888877888888777666654
No 103
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.24 E-value=0.00026 Score=70.33 Aligned_cols=85 Identities=22% Similarity=0.379 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccC-CcchhHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK-GWQWGFGI 114 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~-g~~~~F~i 114 (469)
....++.+-.++++|.+....-...++-+-|+++ .....+.|-.+.++|+.+++.+++.+.++. ||+.+..+
T Consensus 98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~ 170 (395)
T COG2807 98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGF 170 (395)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHH
Confidence 4788999999999999999999999999888864 446788899999999999999999998877 79988877
Q ss_pred HHHHHHHHHHHHH
Q 012167 115 STATILLSIPIFL 127 (469)
Q Consensus 115 ~~v~~~i~~ii~~ 127 (469)
=++.-++++++.+
T Consensus 171 WAl~allAl~~Wl 183 (395)
T COG2807 171 WALLALLALLIWL 183 (395)
T ss_pred HHHHHHHHHHHHh
Confidence 6666655555443
No 104
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.24 E-value=7.4e-05 Score=79.21 Aligned_cols=137 Identities=12% Similarity=0.002 Sum_probs=101.1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+|+.+...+...++.|+.+++.+++.|| +-+.+|.++.+++.+.+++.
T Consensus 44 ~~~~~~~~l~~~~~~~~~G~l~D~~Grk-----------~~l~~~~~~~~~~~~~~~~a--------------------- 91 (495)
T PRK14995 44 LWIIDIYSLVMAGMVLPMGALGDRIGFK-----------RLLMLGGTLFGLASLAAAFS--------------------- 91 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHHc---------------------
Confidence 5566666667777888888876654433 34667888888887777654
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhc-cCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCC
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTD-APLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN 431 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~-aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~ 431 (469)
.|.++++...+++|+|.....|.....+.+. .|++.|+..+|++.....+|..+|+.+++.+.+.. +|
T Consensus 92 ~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~------gw----- 160 (495)
T PRK14995 92 PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF------YW----- 160 (495)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------Ch-----
Confidence 2567788889999999999999888877665 57899999999999999999999999998886521 35
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHH
Q 012167 432 LNHYHLERFYWLMCILGGLNFLHFLFW 458 (469)
Q Consensus 432 ~n~~~l~~~f~~la~l~l~~~l~~~~~ 458 (469)
.+.|+....++++.+++.+..
T Consensus 161 ------r~~f~i~~~~~~~~~~l~~~~ 181 (495)
T PRK14995 161 ------GSVFLINVPIVLVVMGLTARY 181 (495)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHh
Confidence 345666555555555444443
No 105
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.23 E-value=0.00013 Score=74.84 Aligned_cols=98 Identities=10% Similarity=0.019 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHH-HHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCC
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLS-WASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN 431 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~-~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~ 431 (469)
.+++|+++.-.++++---+......-++.+..|+++.++...+. .++.++|..+-+.+.+.+.+.-
T Consensus 310 ~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~------------- 376 (412)
T PF01306_consen 310 TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI------------- 376 (412)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc-------------
Confidence 35778888889999988899999999999999999998888775 5778888888777777776521
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccC
Q 012167 432 LNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSST 467 (469)
Q Consensus 432 ~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~~~~ 467 (469)
+....|++++.+.++..++-++..++-++++.
T Consensus 377 ----G~~~tylimg~iv~~~~li~~f~l~~~~~~~~ 408 (412)
T PF01306_consen 377 ----GFQHTYLIMGLIVLPFTLISAFTLKKDKKQIV 408 (412)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHS--SSSTTC
T ss_pred ----CcHHHHHHHHHHHHHHHHHheeeecCCCcccc
Confidence 23457888888888777766666666555443
No 106
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.23 E-value=4.2e-05 Score=77.62 Aligned_cols=140 Identities=17% Similarity=0.161 Sum_probs=114.7
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167 272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL 351 (469)
Q Consensus 272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~ 351 (469)
.+++.+.-.+.+.+..|++..+..++-|| +-+...+.+.+++-+.+++.
T Consensus 50 aG~lis~yAl~~ai~ap~l~~lt~r~~Rr-----------~lLl~~l~lFi~~n~l~alA-------------------- 98 (394)
T COG2814 50 AGQLITAYALGVALGAPLLALLTGRLERR-----------RLLLGLLALFIVSNLLSALA-------------------- 98 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchH-----------HHHHHHHHHHHHHHHHHHHh--------------------
Confidence 46788888999999999998875444332 22445567777888887776
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCC
Q 012167 352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN 431 (469)
Q Consensus 352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~ 431 (469)
-|.+.++...++.+++--...+...+.+.+++|++.|+.++|+.+...+++..+|.-++.++.+.- +|
T Consensus 99 -p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~------GW----- 166 (394)
T COG2814 99 -PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF------GW----- 166 (394)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh------hH-----
Confidence 367889999999999999999999999999999999999999999999999999988888887643 35
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012167 432 LNHYHLERFYWLMCILGGLNFLHFLFWAA 460 (469)
Q Consensus 432 ~n~~~l~~~f~~la~l~l~~~l~~~~~~~ 460 (469)
...|+.+++++++..+..+...+
T Consensus 167 ------R~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 167 ------RATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 45788888888888887777776
No 107
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.22 E-value=4.8e-05 Score=76.95 Aligned_cols=140 Identities=11% Similarity=-0.003 Sum_probs=100.2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.+...+..++..|+.+++.+++.| .+-+.+|.++.+++.+..+..
T Consensus 43 g~~~~~~~~~~~~~~~~~g~l~d~~g~-----------r~~~~~~~~~~~~~~~~~~~~--------------------- 90 (385)
T TIGR00710 43 QMTLTLYLLGFAAGQLLWGPLSDRYGR-----------RPVLLLGLFIFALSSLGLALS--------------------- 90 (385)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHhcCC-----------hHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 445556666666777777776553322 233567777777777666543
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 432 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~ 432 (469)
.+.++++...++.++++....+....++.+..|++.|+.++|++.....+|..+++.+++.+.+.. +|
T Consensus 91 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------~~------ 158 (385)
T TIGR00710 91 NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL------SW------ 158 (385)
T ss_pred ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CH------
Confidence 245677788899999999999999999999999999999999999999999999999888765411 23
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012167 433 NHYHLERFYWLMCILGGLNFLHFLFWAAR 461 (469)
Q Consensus 433 n~~~l~~~f~~la~l~l~~~l~~~~~~~~ 461 (469)
...|++.++++++..+..+...++
T Consensus 159 -----~~~~~~~~~~~~~~~~~~~~~~~~ 182 (385)
T TIGR00710 159 -----HAIFAFLSLAGILLSALIFFILPE 182 (385)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 345666666666665554444333
No 108
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.21 E-value=3.9e-05 Score=80.48 Aligned_cols=140 Identities=8% Similarity=0.028 Sum_probs=101.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167 272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL 351 (469)
Q Consensus 272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~ 351 (469)
.+++.+...+..++..|+.+++.+++.|| +-+.+|.++.+++.+.++..
T Consensus 39 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~-------------------- 87 (485)
T TIGR00711 39 VQWVITSYMLANAISIPLTGWLAKRFGTR-----------RLFLISTFAFTLGSLLCGVA-------------------- 87 (485)
T ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHhCc--------------------
Confidence 35666677777778888888776544332 33567777777776665443
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCC
Q 012167 352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN 431 (469)
Q Consensus 352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~ 431 (469)
.+.++++...++.+++.....|....++.+..|++.|+.++|++.....+|..+++.+++.+.+. .+|
T Consensus 88 -~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~------~~w----- 155 (485)
T TIGR00711 88 -PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN------YHW----- 155 (485)
T ss_pred -CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC------cCc-----
Confidence 25667888899999999999999999999999999999999999999999999999998877542 134
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012167 432 LNHYHLERFYWLMCILGGLNFLHFLFWAA 460 (469)
Q Consensus 432 ~n~~~l~~~f~~la~l~l~~~l~~~~~~~ 460 (469)
.+.|+..+.++++..++..+..+
T Consensus 156 ------~~~f~~~~~~~~~~~~~~~~~~~ 178 (485)
T TIGR00711 156 ------RWIFLINVPIGIIVVVVAFFILP 178 (485)
T ss_pred ------eehhhhhhHHHHHHHHHHHHHcC
Confidence 23455555555555544444433
No 109
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.18 E-value=0.00049 Score=70.95 Aligned_cols=127 Identities=13% Similarity=0.154 Sum_probs=86.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcc
Q 012167 308 ITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLS 387 (469)
Q Consensus 308 ~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~ 387 (469)
.+..+-+.+|.+..++=+...+... + +.+..+..++....++|+.-.+..+++..++.+.+|++
T Consensus 270 ~g~~~ll~~a~~~~~vR~~l~a~~~-------------~---~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~ 333 (400)
T PF03825_consen 270 FGIKWLLLLALVAYAVRWLLYAYFS-------------D---PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPE 333 (400)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhc-------------C---CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcc
Confidence 4555667777777776666655541 0 01122223444456899999999999999999999999
Q ss_pred hhhHHHHHHHHH-HHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012167 388 MRSLATSLSWAS-LAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAAR 461 (469)
Q Consensus 388 ~~g~~~gl~~l~-~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~ 461 (469)
.|++++|++... .++|..+|.++++.+.+.-+ .+.. .....+|.+.+++.++..+++++..|+
T Consensus 334 ~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g---------~~~~--~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 334 LRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG---------ARGM--FDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc---------chhh--hhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999999998874 58999999888888765221 1100 012345677777777777777777554
No 110
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.17 E-value=4e-05 Score=76.30 Aligned_cols=134 Identities=16% Similarity=0.196 Sum_probs=100.3
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.+...+...+..|+.+.+.+++.+| +-+.++.++.+++.....+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~--------------------- 82 (352)
T PF07690_consen 35 GLLFSAFFLGSALFSPFAGYLSDRFGRR-----------RVLIIGLLLFALGSLLLAFA--------------------- 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-HH-----------HHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCe-----------eeEeehhhhhhhHHHHhhhh---------------------
Confidence 3455666666777778877776544332 34667888888875444432
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 432 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~ 432 (469)
.+.++++...++.++++....+....++.+..|++.|+..+|++....++|..+++.+++.+.+.. +|
T Consensus 83 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~------~~------ 150 (352)
T PF07690_consen 83 SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF------GW------ 150 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC------HH------
T ss_pred hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc------cc------
Confidence 134478889999999999999999999999999999999999999999999999999998876321 12
Q ss_pred CchhHHHHHHHHHHHHHHHHHHH
Q 012167 433 NHYHLERFYWLMCILGGLNFLHF 455 (469)
Q Consensus 433 n~~~l~~~f~~la~l~l~~~l~~ 455 (469)
...|++.++++++..++.
T Consensus 151 -----~~~~~~~~~~~~~~~il~ 168 (352)
T PF07690_consen 151 -----RWAFLISAILSLIAAILF 168 (352)
T ss_dssp -----CCHHHHHHHHHHHHHHHH
T ss_pred -----ccccccccchhhhhhhhH
Confidence 235777777777776643
No 111
>PRK10054 putative transporter; Provisional
Probab=98.15 E-value=6.7e-05 Score=77.12 Aligned_cols=111 Identities=12% Similarity=0.158 Sum_probs=83.5
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.++..+..++..|+.+++.+++.+| +-+.+|.++.+++++..++..
T Consensus 46 g~~~s~~~~~~~~~~~~~G~l~Dr~g~k-----------~~~~~~~~~~~~~~~~~~~~~-------------------- 94 (395)
T PRK10054 46 GYAMTIALTIGVVFSLGFGILADKFDKK-----------RYMLLAITAFASGFIAIPLVN-------------------- 94 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcc-----------hhHHHHHHHHHHHHHHHHHHh--------------------
Confidence 5556666677777888888886644332 235677777777776665542
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
+.+.++..+.+.+.+.....+.....+.+..|++.|+..+|+.....++|..+++.+++.+.
T Consensus 95 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~ 156 (395)
T PRK10054 95 -NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV 156 (395)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455667777777778888999999999999999999999999999999999988875
No 112
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.14 E-value=0.00011 Score=75.42 Aligned_cols=111 Identities=14% Similarity=0.059 Sum_probs=85.1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.+...+..++..++.+++.+++.+| +-+.++.++.+++.+..++.
T Consensus 53 g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------------- 100 (406)
T PRK11551 53 GWAFSAGILGLLPGALLGGRLADRIGRK-----------RILIVSVALFGLFSLATAQA--------------------- 100 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCc-----------hhHHHHHHHHHHHHHHHHHh---------------------
Confidence 4556666677777777777776644333 23556666666665554433
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
.+.++++...++.+++.....+...+.+.+..|++.|+..+|++.....+|..+++.+.....
T Consensus 101 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 163 (406)
T PRK11551 101 WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA 163 (406)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 256677888899999999999999999999999999999999999999999999988876654
No 113
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.13 E-value=0.00012 Score=62.00 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=79.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHH
Q 012167 277 VFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFL 356 (469)
Q Consensus 277 ~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~ 356 (469)
....+..++..|+.+++.++..+ .+-+..+..+.+++.+..... .+.+
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~-----------~~~~~~~~~~~~~~~~~~~~~---------------------~~~~ 52 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGR-----------KPVLLVGLFIFVLSTAMFALS---------------------SNIT 52 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcch-----------hHHHHHHHHHHHHHHHHHHHh---------------------ccHH
Confidence 34455666777777766543322 233555666666665554432 2355
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 357 WVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 357 wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
++....++.+++.....+.....+.+..|++.|+..+|++.....+|..+++.+.+.+.+
T Consensus 53 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 112 (141)
T TIGR00880 53 VLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ 112 (141)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc
Confidence 666778999999999999999999999999999999999999999999999988887653
No 114
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.13 E-value=0.0001 Score=73.68 Aligned_cols=117 Identities=16% Similarity=0.130 Sum_probs=89.2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.++..+..++..|+.+++.+++.|| +-+.++.++.+++.+..++.... ..
T Consensus 37 g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~~~----------------~~ 89 (365)
T TIGR00900 37 SLAALAGMLPYVVLSPIAGALADRYDRK-----------KVMIGADLIRAVLVAVLPFVALL----------------GG 89 (365)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHhhchh-----------HHHHHHHHHHHHHHHHHHHHHHc----------------CC
Confidence 4556667777778888888876654433 23556666666666555544210 01
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
.+.+++....++.+++..+..|...+++.+..|++.|+..+|+......+|..+++.+++.+.+
T Consensus 90 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~ 153 (365)
T TIGR00900 90 LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA 153 (365)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788889999999999999999999999999999999999999999999999999887754
No 115
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.12 E-value=0.00011 Score=75.09 Aligned_cols=136 Identities=10% Similarity=0.092 Sum_probs=100.3
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
++..+.+.+..++..|+.+++.+++. ..+-+.+|.++.+++.+.+++.
T Consensus 41 g~~~s~~~~~~~~~~~~~g~l~dr~g-----------~r~~~~~~~~~~~~~~~l~~~~--------------------- 88 (382)
T PRK10091 41 GHMISYYALGVVVGAPIIALFSSRYS-----------LKHILLFLVALCVIGNAMFTLS--------------------- 88 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHccCc-----------cHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 55667777888888888887754332 2234667888888877776654
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 432 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~ 432 (469)
.+.+++....++.|+++....+.....+.+..|++.|+..+|++.....+|..+++.+++.+.+.. +|
T Consensus 89 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~------gw------ 156 (382)
T PRK10091 89 SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF------SW------ 156 (382)
T ss_pred CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc------cH------
Confidence 256778888999999999988988899999999999999999999999999999988877765311 24
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHH
Q 012167 433 NHYHLERFYWLMCILGGLNFLHFLF 457 (469)
Q Consensus 433 n~~~l~~~f~~la~l~l~~~l~~~~ 457 (469)
...|++.++++++..+..+.
T Consensus 157 -----r~~f~~~~~~~~~~~~~~~~ 176 (382)
T PRK10091 157 -----RYTFLLIAVFNIAVLASIYF 176 (382)
T ss_pred -----HHHHHHHHHHHHHHHHHHHH
Confidence 34566666666655543333
No 116
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.12 E-value=0.0001 Score=75.87 Aligned_cols=107 Identities=15% Similarity=0.039 Sum_probs=82.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHH
Q 012167 277 VFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFL 356 (469)
Q Consensus 277 ~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~ 356 (469)
....+..++..|+.+++.+++.+| +-+..|.++.+++++.+++. .+.+
T Consensus 53 ~~~~l~~~~~~~~~G~l~dr~g~k-----------~~l~~~~~~~~~~~~~~~~~---------------------~~~~ 100 (400)
T PRK11646 53 GLRQFIQQGLGIFGGAIADRFGAK-----------PMIVTGMLMRAAGFATMAIA---------------------HEPW 100 (400)
T ss_pred HHHHHHHHHHHhhhhHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHh---------------------ccHH
Confidence 333444455566666665533322 23667888888877776543 2467
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167 357 WVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 357 wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
+++...++.++++.+..|...+.+.+.+|++.|+..+|+.....++|..+|+.+++.+.
T Consensus 101 ~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~ 159 (400)
T PRK11646 101 LLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL 159 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999999999999999999999999988775
No 117
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.12 E-value=0.00016 Score=74.21 Aligned_cols=111 Identities=11% Similarity=0.025 Sum_probs=87.8
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 012167 274 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI 353 (469)
Q Consensus 274 ~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ 353 (469)
+..+...+...+..|+...+.++. ...+-+..+.++.+++.+..++. .
T Consensus 59 ~~~~~~~~~~~~~~~~~g~l~Dr~-----------grr~~~~~~~~~~~~~~~~~~~~---------------------~ 106 (394)
T PRK10213 59 QSVTVTAFVAMFASLFITQTIQAT-----------DRRYVVILFAVLLTLSCLLVSFA---------------------N 106 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-----------CcHHHHHHHHHHHHHHHHHHHHH---------------------C
Confidence 344566777777777777765433 22244677888888777665543 3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
+.++++...++.+++.....|....++.+..|++.|+..+|++....++|..+++.+++.+.+
T Consensus 107 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~ 169 (394)
T PRK10213 107 SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE 169 (394)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577888888999999999999999999999999999999999999999999999999988764
No 118
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.09 E-value=0.00011 Score=80.37 Aligned_cols=87 Identities=11% Similarity=0.098 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccC---------
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK--------- 106 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~--------- 106 (469)
....++++.++.++|.+...|...+++.|.++++ +|..++++++.+.++|.++|+++++++.+.+
T Consensus 171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~------~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~ 244 (633)
T TIGR00805 171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSK------NSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTE 244 (633)
T ss_pred eehhhHHHHHHHhccCCcchhcCchhhhccCCcc------ccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCC
Confidence 3567889999999999999999999999999875 3667899999999999999999999887543
Q ss_pred -------------CcchhHHHHHHHHHHHHHHHHh
Q 012167 107 -------------GWQWGFGISTATILLSIPIFLL 128 (469)
Q Consensus 107 -------------g~~~~F~i~~v~~~i~~ii~~~ 128 (469)
+|+.+|.+.++..++..+.+++
T Consensus 245 ~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~ 279 (633)
T TIGR00805 245 DVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF 279 (633)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2888999988777665554443
No 119
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.06 E-value=0.0015 Score=68.41 Aligned_cols=88 Identities=18% Similarity=0.216 Sum_probs=66.6
Q ss_pred chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHH-H-hhcccCCcchhH
Q 012167 35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFV-V-WIEDNKGWQWGF 112 (469)
Q Consensus 35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~-~-~l~~~~g~~~~F 112 (469)
.+..++.+|+.+.++..|.......-++.+.-|++ .|...=...-.++++|.+++..++ + .++..-.|++.+
T Consensus 114 ~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~------~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~ 187 (485)
T KOG0569|consen 114 PSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKN------LRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLL 187 (485)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhh------hccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHH
Confidence 45788999999999999999999999998877654 344444456678889998885543 3 455667899999
Q ss_pred HHHHHHHHHHHHHHHh
Q 012167 113 GISTATILLSIPIFLL 128 (469)
Q Consensus 113 ~i~~v~~~i~~ii~~~ 128 (469)
.++.+..++.++...+
T Consensus 188 ~~~~i~~~~~l~~l~~ 203 (485)
T KOG0569|consen 188 AFPLIPALLQLALLPF 203 (485)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9988877776665544
No 120
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.06 E-value=0.00017 Score=75.11 Aligned_cols=135 Identities=12% Similarity=-0.011 Sum_probs=95.6
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.+...+...+..|+.+++.+++.+| +-+.+++++.+++.+..++.
T Consensus 61 g~~~~~~~~~~~~~~~~~G~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------------- 108 (434)
T PRK11663 61 GLLATLFYITYGVSKFVSGIVSDRSNAR-----------YFMGIGLIATGIINILFGFS--------------------- 108 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhcCCc-----------hhHHHHHHHHHHHHHHHHHH---------------------
Confidence 4445555666667777777765543322 23567777777777665553
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 432 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~ 432 (469)
.+.+.++..+++.++++....+.....+.+..|++.||..+|++....++|..+++.+.+.+.+.. +|
T Consensus 109 ~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~------gw------ 176 (434)
T PRK11663 109 SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY------GW------ 176 (434)
T ss_pred hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------cH------
Confidence 245556667788899998888999999999999999999999999999999999998888765421 24
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHH
Q 012167 433 NHYHLERFYWLMCILGGLNFLHFL 456 (469)
Q Consensus 433 n~~~l~~~f~~la~l~l~~~l~~~ 456 (469)
.+.|++.++++++..+...
T Consensus 177 -----~~~f~~~~i~~~~~~~~~~ 195 (434)
T PRK11663 177 -----RYGMMIAGIIAIVVGLFLC 195 (434)
T ss_pred -----HHHHHHHHHHHHHHHHHHH
Confidence 4456666666555544333
No 121
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.05 E-value=0.00011 Score=76.08 Aligned_cols=136 Identities=9% Similarity=0.077 Sum_probs=94.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhH
Q 012167 276 PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITF 355 (469)
Q Consensus 276 ~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~ 355 (469)
.++..+...+..++.+.+.+++.|| +-+..|.++.+++.+..++. .+.
T Consensus 57 ~s~~~~~~~~~~~~~G~l~dr~Grr-----------~~l~~~~~~~~~~~~~~~~a---------------------~~~ 104 (413)
T PRK15403 57 VSLYLAGGMALQWLLGPLSDRIGRR-----------PVLITGALIFTLACAATLFT---------------------TSM 104 (413)
T ss_pred HHHHHHHHHHHHHhhhHHHHHcCch-----------HHHHHHHHHHHHHHHHHHHc---------------------CCH
Confidence 3444445555666666665544332 34566777777766665543 256
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCch
Q 012167 356 LWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHY 435 (469)
Q Consensus 356 ~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~ 435 (469)
++++...+++|+++.+..+.....+.+..|++.++..+|++.....+|..+++.+++.+.+. .+|
T Consensus 105 ~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~------~gw--------- 169 (413)
T PRK15403 105 TQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF------VHW--------- 169 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCH---------
Confidence 77888899999999887787888888899999999999999999999999999988776531 134
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh
Q 012167 436 HLERFYWLMCILGGLNFLHFLFWAA 460 (469)
Q Consensus 436 ~l~~~f~~la~l~l~~~l~~~~~~~ 460 (469)
...|+..+++.++..+..+...+
T Consensus 170 --~~~f~~~~~~~~i~~~~~~~~lp 192 (413)
T PRK15403 170 --KVLFAIIAVMGLIAFVGLLLAMP 192 (413)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhCC
Confidence 45677777776666554443333
No 122
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.04 E-value=9.1e-05 Score=74.50 Aligned_cols=137 Identities=14% Similarity=0.111 Sum_probs=102.2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.+...+..++..|+.+++.+++.|| +-+.++.++.+++....++.
T Consensus 32 ~~~~~~~~~~~~~~~~~~g~l~d~~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------------- 79 (399)
T TIGR00893 32 GYVFSAFSWGYVVGQFPGGWLLDRFGAR-----------KTLAVFIVIWGVFTGLQAFA--------------------- 79 (399)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcCcc-----------eeeHHHHHHHHHHHHHHHHH---------------------
Confidence 5666777777788888888876655433 12445666666666665554
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 432 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~ 432 (469)
.+.++++...++.+++.....+....++.+..|++.|+..+|++.....+|..+++.+.+.+.+.. +|
T Consensus 80 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~------ 147 (399)
T TIGR00893 80 GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF------SW------ 147 (399)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC------Cc------
Confidence 256778888999999999999999999999999999999999999999999999998888654311 24
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHH
Q 012167 433 NHYHLERFYWLMCILGGLNFLHFLFW 458 (469)
Q Consensus 433 n~~~l~~~f~~la~l~l~~~l~~~~~ 458 (469)
.+.|+..++++++..+..++.
T Consensus 148 -----~~~~~~~~~~~~~~~~~~~~~ 168 (399)
T TIGR00893 148 -----QWAFIIEGVLGIIWGVLWLKF 168 (399)
T ss_pred -----hHHHHHHHHHHHHHHHHhhhe
Confidence 345666677666665554443
No 123
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.02 E-value=0.00019 Score=73.02 Aligned_cols=112 Identities=16% Similarity=0.139 Sum_probs=88.2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.++..+...+..|+.+.+.+++.|| +-+.++.++.+++.+..++.
T Consensus 50 g~~~~~~~~~~~~~~~~~G~l~Dr~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------------- 97 (405)
T TIGR00891 50 ASLISAALISRWFGALMFGLWGDRYGRR-----------LPMVTSIVLFSAGTLACGFA--------------------- 97 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence 4566677777778888888887655433 23556777777766665543
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
.+.+++....++.|+++....+....++.+..|++.|+..+|++....++|..+++.+...+.+
T Consensus 98 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~ 161 (405)
T TIGR00891 98 PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVP 161 (405)
T ss_pred ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2466677789999999999999999999999999999999999999999999999988877653
No 124
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.99 E-value=0.00045 Score=70.64 Aligned_cols=138 Identities=14% Similarity=0.115 Sum_probs=94.8
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.++..+...+..|+.+++.+++.|| +-+..+.++.+++.+..++.
T Consensus 57 g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------------- 104 (408)
T PRK09874 57 GLVFSITFLFSAIASPFWGGLADRKGRK-----------IMLLRSALGMGIVMVLMGLA--------------------- 104 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhCcH-----------HHHHHHHHHHHHHHHHHHHH---------------------
Confidence 3445566666777788887776644322 23556666666666555433
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 432 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~ 432 (469)
.+.++++...++.+++..+ .+.....+.+..|++.|+..+|++.....+|..+++.+.+.+.+.. +|
T Consensus 105 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~------ 171 (408)
T PRK09874 105 QNIWQFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY------GL------ 171 (408)
T ss_pred hhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CH------
Confidence 2466777788888988765 4677788889999999999999999999999999998888765421 23
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012167 433 NHYHLERFYWLMCILGGLNFLHFLFWAA 460 (469)
Q Consensus 433 n~~~l~~~f~~la~l~l~~~l~~~~~~~ 460 (469)
...|++.+++.++..+..+...+
T Consensus 172 -----~~~~~~~~~~~~~~~~~~~~~~~ 194 (408)
T PRK09874 172 -----RPVFFITASVLFLCFLVTLFCIR 194 (408)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566667766666554444433
No 125
>PRK10504 putative transporter; Provisional
Probab=97.99 E-value=0.0003 Score=73.82 Aligned_cols=139 Identities=12% Similarity=0.101 Sum_probs=96.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 012167 274 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI 353 (469)
Q Consensus 274 ~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ 353 (469)
++.+...+...+..|+.+++.+++.+| +-+..+.++.+++.+..++. .
T Consensus 49 ~~~~~~~~~~~~~~~~~g~l~d~~g~r-----------~~~~~~~~~~~~~~~~~~~~---------------------~ 96 (471)
T PRK10504 49 MVIVSYVLTVAVMLPASGWLADRVGVR-----------NIFFTAIVLFTLGSLFCALS---------------------G 96 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchH-----------HHHHHHHHHHHHHHHHHHHh---------------------C
Confidence 444444455566777777776544333 23445666666666554432 2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCC
Q 012167 354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN 433 (469)
Q Consensus 354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n 433 (469)
+.++++...++++++.....|.....+.+..|++.++..+|+......+|..+++.+++.+.+.. +|
T Consensus 97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~------gw------- 163 (471)
T PRK10504 97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA------SW------- 163 (471)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc------cH-------
Confidence 45667778899999999999999999999999999999999999999999999999988776421 24
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012167 434 HYHLERFYWLMCILGGLNFLHFLFWAAR 461 (469)
Q Consensus 434 ~~~l~~~f~~la~l~l~~~l~~~~~~~~ 461 (469)
.+.|++.+.++++..+......++
T Consensus 164 ----~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 164 ----HWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 445666665555555544444333
No 126
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=97.98 E-value=0.0023 Score=66.46 Aligned_cols=86 Identities=8% Similarity=0.026 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccC------
Q 012167 312 QRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAP------ 385 (469)
Q Consensus 312 ~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP------ 385 (469)
+-+.+|.++.+++.+...+.. ..+.++.+...++.++|-....+..++++.+...
T Consensus 303 ~~~~~~~~~~~i~~~~~~f~~-------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~T 363 (467)
T COG2211 303 KLFLIGLLLLAVGYLLLYFTP-------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKT 363 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhhc-------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHh
Confidence 446778888888887777652 2345666667788888888888998998888655
Q ss_pred -cchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 386 -LSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 386 -~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
++..|.+.|...+..=+|..+++.+.+++-.
T Consensus 364 G~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 364 GVRREGIVYSGMTFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888999888888888888877776654
No 127
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=3.1e-05 Score=77.47 Aligned_cols=147 Identities=11% Similarity=0.134 Sum_probs=118.5
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC
Q 012167 271 PPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEP 350 (469)
Q Consensus 271 p~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~ 350 (469)
.-+++.+.-.++-++..|+.+.+.++... ..-|.+|++++..+-++.++.+
T Consensus 107 ~iG~LFaskA~~qllvnp~~G~l~~~iGy-----------~ipm~~Gl~vmf~sTilFafg~------------------ 157 (464)
T KOG3764|consen 107 QIGLLFASKALVQLLVNPFFGNLIDRIGY-----------KIPMVAGLFVMFLSTILFAFGN------------------ 157 (464)
T ss_pred chhHHHHHHHHHHHHhcccchhhHHHhcc-----------ccHHHHHHHHHHHHHHHHHHcc------------------
Confidence 34566666677777777777777653332 2347789999888888887763
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcch-hhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcC
Q 012167 351 LPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSM-RSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFG 429 (469)
Q Consensus 351 ~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~-~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~ 429 (469)
|++.++.+..++|+|..+.+..+++++++.-|++. ||.+||.-.-+.++|..+|+.+++++++.-++
T Consensus 158 ---sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk--------- 225 (464)
T KOG3764|consen 158 ---SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGK--------- 225 (464)
T ss_pred ---hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCC---------
Confidence 45578899999999999999999999999999977 59999999999999999999999999875431
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 012167 430 SNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSS 466 (469)
Q Consensus 430 ~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~~~ 466 (469)
..=|+++++++++.+.+-+++.+.++.++
T Consensus 226 --------~aPFlVL~~v~Lld~~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 226 --------SAPFLVLAIVLLLDGALQLLVIEPTEMDP 254 (464)
T ss_pred --------cCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence 12389999999999998888888877666
No 128
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=97.95 E-value=0.001 Score=67.30 Aligned_cols=85 Identities=13% Similarity=0.130 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCC---cchhHHH
Q 012167 38 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG---WQWGFGI 114 (469)
Q Consensus 38 ~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g---~~~~F~i 114 (469)
+.+.+.-++.+++.|-| ....+++..+||+++ +-.+..++= +.|+|..+..+++|.+....| |+.+-.+
T Consensus 106 ~~ll~~gll~G~~GasF-av~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i 177 (417)
T COG2223 106 WQLLVIGLLLGLAGASF-AVGMPNASFFFPKEK------QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGI 177 (417)
T ss_pred HHHHHHHHHHhccccee-hcccccccccCChhh------hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55666666677766555 555677888999763 446667666 889999999999999999999 9988888
Q ss_pred HHHHHHHHHHHHHhcC
Q 012167 115 STATILLSIPIFLLGS 130 (469)
Q Consensus 115 ~~v~~~i~~ii~~~~~ 130 (469)
-.+.++++.+.+++..
T Consensus 178 ~~~~l~v~~v~~~~~~ 193 (417)
T COG2223 178 YVVALAIAAVLAWLGM 193 (417)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888888887777653
No 129
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.93 E-value=0.00025 Score=73.97 Aligned_cols=88 Identities=20% Similarity=0.140 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHH
Q 012167 37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIST 116 (469)
Q Consensus 37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~ 116 (469)
.....+.+.+..+|.....-...++..+.-+++.. + +...-++.|.+..+|++++..++|++.++.+++..|.+++
T Consensus 86 ~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~-~---~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~ 161 (433)
T PF03092_consen 86 AAIAVVLLFLASFGYAFADVAADALVVELARREPE-S---RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISA 161 (433)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc-h---hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHH
Confidence 33445566778889999999999999988765532 2 4455677899999999999999999999999999999987
Q ss_pred HHHHHHHHHHHh
Q 012167 117 ATILLSIPIFLL 128 (469)
Q Consensus 117 v~~~i~~ii~~~ 128 (469)
+.-.+..+..++
T Consensus 162 ~~~~l~~~~~~~ 173 (433)
T PF03092_consen 162 ALPLLMLIVALF 173 (433)
T ss_pred HHHHHHHHHHHH
Confidence 776666554333
No 130
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=97.91 E-value=0.00048 Score=70.36 Aligned_cols=136 Identities=16% Similarity=0.074 Sum_probs=96.2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 012167 274 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI 353 (469)
Q Consensus 274 ~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ 353 (469)
+..++..+..++..|+.+++.+++.|| +-+.+|.++.+++....... .
T Consensus 42 ~~~~~~~~~~~~~~~~~G~l~Dr~g~r-----------~~l~~~~~~~~i~~~~~~~~---------------------~ 89 (392)
T PRK10473 42 IAFSVYLAGMAAAMLFAGKIADRSGRK-----------PVAIPGAALFIIASLLCSLA---------------------E 89 (392)
T ss_pred HHHHHHHHHHHHHHHhHhHHHHHhCCh-----------HHHHHHHHHHHHHHHHHHHh---------------------C
Confidence 444555556667778888887654332 23556777777766655443 2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCC
Q 012167 354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN 433 (469)
Q Consensus 354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n 433 (469)
+.++++...++++++..+..+..+..+.+..|++.|+..+|+++....+|..+++.++..+.+. .+|
T Consensus 90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~------~g~------- 156 (392)
T PRK10473 90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK------FPW------- 156 (392)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------cCh-------
Confidence 4566777889999999999999999999999999999999999999999999998888776431 124
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q 012167 434 HYHLERFYWLMCILGGLNFLHFLFW 458 (469)
Q Consensus 434 ~~~l~~~f~~la~l~l~~~l~~~~~ 458 (469)
...|++.++++++..++.+..
T Consensus 157 ----~~~~~~~~~~~~i~~~~~~~~ 177 (392)
T PRK10473 157 ----QSLFYTMAAMGILVLLLSLFI 177 (392)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666655544333
No 131
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=97.87 E-value=0.00076 Score=69.27 Aligned_cols=134 Identities=13% Similarity=0.075 Sum_probs=90.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchh
Q 012167 275 LPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPIT 354 (469)
Q Consensus 275 l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s 354 (469)
..+...+...+..|+.+.+.+++.|| +-+.++.++.+++.+..+.. .+
T Consensus 53 ~~~~~~~~~~~~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~---------------------~~ 100 (406)
T PRK15402 53 SMTAYLAGGMFLQWLLGPLSDRIGRR-----------PVMLAGVAFFILTCLAILLA---------------------QS 100 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCh-----------HHHHHHHHHHHHHHHHHHHH---------------------cc
Confidence 34455555556666777665544322 23556666666666555443 14
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCc
Q 012167 355 FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNH 434 (469)
Q Consensus 355 ~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~ 434 (469)
.++++...++.+++..+..+.....+.+..|++.++..+++......+|..+++.+++.+.+. .+|
T Consensus 101 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~------~~w-------- 166 (406)
T PRK15402 101 IEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV------LPW-------- 166 (406)
T ss_pred HHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------cCc--------
Confidence 556777889999999988899999999999999999999988888888888888887766532 134
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 012167 435 YHLERFYWLMCILGGLNFLHFLF 457 (469)
Q Consensus 435 ~~l~~~f~~la~l~l~~~l~~~~ 457 (469)
...|++.++++++..+....
T Consensus 167 ---~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK15402 167 ---RGMFVLFAALAALSFFGLWR 186 (406)
T ss_pred ---cHHHHHHHHHHHHHHHHHHH
Confidence 23566666666665554333
No 132
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.87 E-value=0.0052 Score=66.03 Aligned_cols=87 Identities=15% Similarity=0.184 Sum_probs=56.5
Q ss_pred chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHH
Q 012167 35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGI 114 (469)
Q Consensus 35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i 114 (469)
.+...+..|..+.++|.|... .....++|..+.+ .|..++.+..+..-+...+++.++..+..+-+|||.|++
T Consensus 129 ~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k------~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~ 201 (599)
T PF06609_consen 129 QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNK------WRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYI 201 (599)
T ss_pred CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccc------hhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHH
Confidence 446678889999999987765 4455678888653 233333333333223333455666556666799999999
Q ss_pred HHHHHHHHHHHHHh
Q 012167 115 STATILLSIPIFLL 128 (469)
Q Consensus 115 ~~v~~~i~~ii~~~ 128 (469)
.++...++++...+
T Consensus 202 ~~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 202 FIIWSGIALVLIFF 215 (599)
T ss_pred HHHHHHHHHHHHHH
Confidence 99888887765444
No 133
>TIGR00895 2A0115 benzoate transport.
Probab=97.86 E-value=0.00017 Score=72.97 Aligned_cols=112 Identities=15% Similarity=0.084 Sum_probs=84.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.++..+..++..++.+++.+++.|| +-+.+|.++.+++.+..++.
T Consensus 55 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~-----------~~~~~~~~~~~~~~~~~~~~--------------------- 102 (398)
T TIGR00895 55 GFLFSAGLIGMAFGALFFGPLADRIGRK-----------RVLLWSILLFSVFTLLCALA--------------------- 102 (398)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHc---------------------
Confidence 3445555556666667777665544332 23556777677666665543
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
.+.++++...++.+++.....+.....+.+..|++.|+..+|++.....+|..+++.+.+.+.+
T Consensus 103 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 166 (398)
T TIGR00895 103 TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP 166 (398)
T ss_pred cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh
Confidence 2456677788999999999999999999999999999999999999999999999988877653
No 134
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.84 E-value=0.0033 Score=65.49 Aligned_cols=85 Identities=9% Similarity=0.014 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHH--
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFG-- 113 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~-- 113 (469)
+...+.+..++.|+++|..- +....+..+++++ +|.++.+++..+.++|.++++++++++. .+||+.-+.
T Consensus 114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~k------ER~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~Ln 185 (511)
T TIGR00806 114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPS------RYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTLN 185 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHH
Confidence 57888999999999999999 9999999999964 4678899999999999999999999954 578885544
Q ss_pred -HHHHHHHHHHHHHHh
Q 012167 114 -ISTATILLSIPIFLL 128 (469)
Q Consensus 114 -i~~v~~~i~~ii~~~ 128 (469)
++...+.+++++-++
T Consensus 186 ~Isl~s~~~a~~~a~~ 201 (511)
T TIGR00806 186 IISLVFMTFSVFLALF 201 (511)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 455555566555433
No 135
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=97.83 E-value=0.00097 Score=73.80 Aligned_cols=111 Identities=12% Similarity=0.038 Sum_probs=85.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.+...+..++..++.+++.+++.|| +-+.+++++.+++.++.++.
T Consensus 205 g~l~s~~~lG~iiG~li~G~LsDR~GRR-----------~~lii~lil~~i~~ll~afa--------------------- 252 (742)
T TIGR01299 205 GMLGLIVYLGMMVGAFFWGGLADKLGRK-----------QCLLICLSVNGFFAFFSSFV--------------------- 252 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHH---------------------
Confidence 4556666677777777777776655443 23556666666666555543
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
.+.++++...++.+++.....|....++.+.+|++.||..++++.....+|..+++.++..+.
T Consensus 253 ~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il 315 (742)
T TIGR01299 253 QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII 315 (742)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 246677888999999999999999999999999999999999999999999999887765543
No 136
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.83 E-value=0.0014 Score=65.91 Aligned_cols=111 Identities=19% Similarity=0.169 Sum_probs=82.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167 272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL 351 (469)
Q Consensus 272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~ 351 (469)
.+++.+...+..++..|+.+++.+++.+| +-+.++.++.+++.+..++..
T Consensus 39 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~i~~~~~~~~~------------------- 88 (366)
T TIGR00886 39 LGNLVAVPVLAGAVLRIILGFLVDKFGPR-----------YTTTLSLLLLAIPCLWAGLAV------------------- 88 (366)
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 45667777778888888888886654332 346678888888877766542
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhh
Q 012167 352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIV 414 (469)
Q Consensus 352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~ 414 (469)
.+.++++...++.+++.... +.....+.+..|++.|+..++++.....+|..+++.+.+.+
T Consensus 89 -~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l 149 (366)
T TIGR00886 89 -QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPI 149 (366)
T ss_pred -hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 15666777889999987655 55688999999999999999999877777777776666544
No 137
>PRK03633 putative MFS family transporter protein; Provisional
Probab=97.83 E-value=0.0011 Score=67.44 Aligned_cols=112 Identities=12% Similarity=-0.016 Sum_probs=88.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167 272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL 351 (469)
Q Consensus 272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~ 351 (469)
.+++.+...+...+..|+.+++.++..+| +-+.+|.++.++++...++.
T Consensus 43 ~G~~~s~~~l~~~~~~~~~g~l~dr~g~k-----------~~~~~~~~~~~~~~~~~~~~-------------------- 91 (381)
T PRK03633 43 VGVVSSSYFTGNLVGTLLAGYVIKRIGFN-----------RSYYLASLIFAAGCAGLGLM-------------------- 91 (381)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHh--------------------
Confidence 35666777777777788888776655443 34667888888777766554
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167 352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
.|.++++...++.|++.....|.....+.+..|++.|+..+|.+.....+|..+++.+.+.+.
T Consensus 92 -~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 154 (381)
T PRK03633 92 -VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS 154 (381)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 246677788999999999999988888889999999999999999999999999999988765
No 138
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=97.82 E-value=0.00064 Score=69.74 Aligned_cols=111 Identities=17% Similarity=0.074 Sum_probs=88.4
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167 272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL 351 (469)
Q Consensus 272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~ 351 (469)
.+++.+.+.+...+..|+.+++.+++.+| +-+..|+++.+++.+..++.+
T Consensus 46 ~g~~~s~~~~~~~l~~~~~g~l~dr~G~r-----------~~l~~~~~l~~~~~~~~~~a~------------------- 95 (393)
T PRK09705 46 AALLTALPVVTMGGLALAGSWLHQHVSER-----------RSVAISLLLIAVGALMRELYP------------------- 95 (393)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHCc-------------------
Confidence 35566666777778888888876654433 457789999999998887652
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167 352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
+.++++...++.|+|+....+...+.+.+..| +.|+.++|++......|..+++.+++.+.
T Consensus 96 --~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~ 156 (393)
T PRK09705 96 --QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLV 156 (393)
T ss_pred --chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778999999999999999999998887 67999999999988889999888887654
No 139
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.82 E-value=6.4e-05 Score=75.44 Aligned_cols=138 Identities=14% Similarity=0.001 Sum_probs=98.4
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.+...+...+..++.+++.+++.+| +-+.+|.++.+++.+..++.
T Consensus 33 g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------------- 80 (379)
T TIGR00881 33 GLLLSSFSIAYGISKFVMGSVSDRSNPR-----------VFLPIGLILCAIVNLFFGFS--------------------- 80 (379)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHhhCCe-----------ehhHHHHHHHHHHHHHHHHh---------------------
Confidence 4556666667777777777776544332 23567777777777776654
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHH-HhHhhhccccccCCCCCCCcCCC
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFST-VLVSIVNNITSTYRHTPWLFGSN 431 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~-~l~~~~~~~t~~~~~~~w~~~~~ 431 (469)
.+.++++...++.+++..+..|.....+.+..|++.|+..+|++.....+|..+++ .+...+... .+|
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~----- 149 (379)
T TIGR00881 81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL------YSW----- 149 (379)
T ss_pred hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc------CCc-----
Confidence 24567778889999999999999999999999999999999999999999999998 455444321 124
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 012167 432 LNHYHLERFYWLMCILGGLNFLHFLFWA 459 (469)
Q Consensus 432 ~n~~~l~~~f~~la~l~l~~~l~~~~~~ 459 (469)
...|++.++++++..++.+...
T Consensus 150 ------~~~~~~~~~~~~~~~~~~~~~~ 171 (379)
T TIGR00881 150 ------HWVFIVPGIIAIIVSLICFLLL 171 (379)
T ss_pred ------hhHHHHHHHHHHHHHHHHheee
Confidence 2346666666666555554443
No 140
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=97.82 E-value=0.00048 Score=68.11 Aligned_cols=112 Identities=13% Similarity=0.102 Sum_probs=89.3
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
++..+...+..++..|+.+++.++..|| +-+.+|.++.+++.+...+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~g~~~d~~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------------- 84 (352)
T cd06174 37 GLIVSAFSLGYALGSLLAGYLSDRFGRR-----------RVLLLGLLLFALGSLLLAFA--------------------- 84 (352)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhCCc-----------hhhHHHHHHHHHHHHHHHHh---------------------
Confidence 4556666677777788888876654332 23567777777777766554
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
.+.+++....++.+++..+..+....+..+..|++.|+..+|+......+|..+++.+.+.+.+
T Consensus 85 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 148 (352)
T cd06174 85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE 148 (352)
T ss_pred ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2466778889999999999999999999999999999999999999999999999999887764
No 141
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=97.81 E-value=0.00042 Score=71.71 Aligned_cols=110 Identities=15% Similarity=0.111 Sum_probs=84.2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.+...+...+..|+.+++.+++.|| +-+.++.++.+++.+..++.. ..
T Consensus 74 ~~~~~~~~~~~~i~~~~~g~l~d~~grr-----------~~~~~~~~~~~~~~~~~~~~~------------------~~ 124 (481)
T TIGR00879 74 GLVVSIFLVGGFIGALFAGWLSDRFGRK-----------KSLLIIALLFVIGAILMGLAA------------------FA 124 (481)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhhhH-----------HHHHHHHHHHHHHHHHHHHhc------------------cc
Confidence 4455566666667777777776544333 335677777777776665442 12
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhH
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLV 411 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~ 411 (469)
.+.++++...++.++|+....+....++.+..|++.|+.++|++.....+|..+++.+.
T Consensus 125 ~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 125 LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 24457778899999999999999999999999999999999999999999999999887
No 142
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=97.81 E-value=0.00045 Score=69.89 Aligned_cols=139 Identities=14% Similarity=0.126 Sum_probs=97.8
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.++..+...+..++.+.+.+++.| .+-+.+|.++.+++....++.+
T Consensus 29 ~~~~~~~~~~~~~~~~~~g~l~d~~g~-----------~~~~~~~~~~~~i~~~~~~~~~-------------------- 77 (377)
T PRK11102 29 QMTLSAYILGFAIGQLFYGPMADSFGR-----------KPVILGGTLVFALAAVACALAQ-------------------- 77 (377)
T ss_pred HHHHHHHHHHHHHHHHhhchHHhhcCC-----------hHHHHHHHHHHHHHHHHHHHHc--------------------
Confidence 334455566666667777666543322 2346677777777777665542
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 432 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~ 432 (469)
+.+.++...++.+++.....+....++.+..|++.|+..+|++.....+|..+++.+++.+.+.. +|
T Consensus 78 -~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~------ 144 (377)
T PRK11102 78 -TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF------SW------ 144 (377)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------Ch------
Confidence 34556677899999999999999999999999999999999999999999999998887765421 23
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012167 433 NHYHLERFYWLMCILGGLNFLHFLFWAA 460 (469)
Q Consensus 433 n~~~l~~~f~~la~l~l~~~l~~~~~~~ 460 (469)
...|++.++++++..++.....+
T Consensus 145 -----~~~~~~~~~~~~~~~~~~~~~~~ 167 (377)
T PRK11102 145 -----HAIFWVLALAAILAAALVFFFIP 167 (377)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhCC
Confidence 34566666666666554443333
No 143
>PRK03699 putative transporter; Provisional
Probab=97.79 E-value=0.0011 Score=68.04 Aligned_cols=135 Identities=13% Similarity=0.064 Sum_probs=93.8
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.+...+...+..++.+++.+++.+| +-+..+.++.+++.+..++.
T Consensus 45 g~~~s~~~~~~~i~~~~~g~l~dr~g~r-----------~~~~~~~~~~~i~~~l~~~~--------------------- 92 (394)
T PRK03699 45 SNTFTFLNAGILISIFLNAWLMEIIPLK-----------RQLIFGFALMILAVAGLMFS--------------------- 92 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH-----------HHHHHHHHHHHHHHHHHHHc---------------------
Confidence 3445555666667777777776554433 33556777777766665543
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 432 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~ 432 (469)
.+.++++...++.++++....+.....+.+..|++.|+..+++.....++|..+++.+.+.+.... .+|
T Consensus 93 ~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----~gw------ 161 (394)
T PRK03699 93 HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARS-----IEW------ 161 (394)
T ss_pred chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----ccH------
Confidence 245667778899999999888889999999999999999999998888899999888876543211 134
Q ss_pred CchhHHHHHHHHHHHHHHHHHHH
Q 012167 433 NHYHLERFYWLMCILGGLNFLHF 455 (469)
Q Consensus 433 n~~~l~~~f~~la~l~l~~~l~~ 455 (469)
...|...+++.++.+++.
T Consensus 162 -----~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK03699 162 -----YWVYACIGLVYVAIFILT 179 (394)
T ss_pred -----HHHHHHHHHHHHHHHHHH
Confidence 345666666665554443
No 144
>PRK12382 putative transporter; Provisional
Probab=97.77 E-value=0.00094 Score=68.19 Aligned_cols=120 Identities=12% Similarity=0.066 Sum_probs=86.4
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+.+.+...+...+..|+.+++.+++.|| +-+.+|.+..+++.+...+... . +....
T Consensus 54 g~~~s~~~~~~~i~~~~~G~l~Dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~-----~--------~~~~~ 109 (392)
T PRK12382 54 GIAVGIQFLATVLTRGYAGRLADQYGAK-----------RSALQGMLACGLAGLAYLLAAI-----L--------PVSAP 109 (392)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHhhcch-----------HHHHHHHHHHHHHHHHHHhhhc-----c--------ccchh
Confidence 4556677777788889999887765443 2345565555544332211100 0 00012
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
.+.++++...++.|+++....+...+.+.+..|++.|+.++|.+.....+|..+++.+++.+.+
T Consensus 110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~ 173 (392)
T PRK12382 110 FKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHS 173 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677788889999999999999999999999999999999999999889999999988887653
No 145
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=97.75 E-value=0.014 Score=59.06 Aligned_cols=65 Identities=15% Similarity=0.127 Sum_probs=52.8
Q ss_pred CchhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012167 34 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED 104 (469)
Q Consensus 34 ~~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~ 104 (469)
......|.+++.+++.|.|..+...++++++.-+++.. .+| .+.--...-+|++++|.+++++-.
T Consensus 101 ~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a---~~r---lnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 101 SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESA---AFR---LNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhH---HHH---HHHHHHhhhhHHHHHHHHHHHHHH
Confidence 35578889999999999999999999999999887532 223 455566678999999999998866
No 146
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=97.75 E-value=0.00073 Score=68.86 Aligned_cols=90 Identities=12% Similarity=0.100 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCC
Q 012167 354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN 433 (469)
Q Consensus 354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n 433 (469)
+.++++...++.|+||.. .+.....+.+..|++.|++++|++.....+|..+++.++..+.+. .+|
T Consensus 78 ~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~------~gW------- 143 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA------GGL------- 143 (368)
T ss_pred cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------cch-------
Confidence 678899999999999986 456666678999999999999999999999999999998887642 246
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012167 434 HYHLERFYWLMCILGGLNFLHFLFWAAR 461 (469)
Q Consensus 434 ~~~l~~~f~~la~l~l~~~l~~~~~~~~ 461 (469)
...|+..++++++..++.++..+.
T Consensus 144 ----r~~f~~~~~l~~~~~~~~~~~lp~ 167 (368)
T TIGR00903 144 ----QLLIIPIAAVAAAGIILVLAALPA 167 (368)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 346777777777766655554443
No 147
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.73 E-value=0.0015 Score=67.46 Aligned_cols=112 Identities=13% Similarity=0.145 Sum_probs=87.4
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
++..++..+..++..|+.+++.+++.|| +-+.+|.++.+++.+..++.
T Consensus 56 ~~~~~~~~~~~~l~~~~~g~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~--------------------- 103 (426)
T PRK12307 56 AFLATAAFIGRPFGGALFGLLADKFGRK-----------PLMMWSIVAYSVGTGLSGLA--------------------- 103 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCh-----------HHHHHHHHHHHHHHHHHHHH---------------------
Confidence 4455666667777777777776543322 34667888888877776654
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
.+.++++...++.|+++....+....++.+..|++.|+.++|++....++|..+++.+...+.+
T Consensus 104 ~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~ 167 (426)
T PRK12307 104 SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE 167 (426)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc
Confidence 2466778889999999999999999999999999999999999999999999999888776543
No 148
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=97.73 E-value=0.00058 Score=72.06 Aligned_cols=142 Identities=11% Similarity=0.003 Sum_probs=99.4
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHH-hhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIP-FARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL 351 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p-~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~ 351 (469)
+.+.+...+...+..++.+++.++ +.+| +-+.+|.++.+++++..++..
T Consensus 51 g~~~~~~~~~~~~~~~~~G~laDr~~G~~-----------~~l~~~~~~~~~g~~~~~~~~------------------- 100 (475)
T TIGR00924 51 FIIFGAYSALVYLLTSVGWWFGDRVWGTK-----------KTMVLGGIVLMLGHFMLAMSI------------------- 100 (475)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhcchH-----------HHHHHHHHHHHHHHHHHHhcc-------------------
Confidence 344455555556666666666554 2222 346778888888877766531
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcch---hhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCc
Q 012167 352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSM---RSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLF 428 (469)
Q Consensus 352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~---~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~ 428 (469)
+.+++....++.++|+.+..|....++.++.|++. |+...++++...++|..+|+.+++.+.+.. +|
T Consensus 101 --~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~------g~-- 170 (475)
T TIGR00924 101 --YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY------GY-- 170 (475)
T ss_pred --cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc------Ch--
Confidence 34456667788999999999999999999998754 888999999999999999999998876411 23
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012167 429 GSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK 463 (469)
Q Consensus 429 ~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~ 463 (469)
...|.+.++.++++.+.++...+.++
T Consensus 171 ---------~~~f~~~~~~~~~~~l~~~~~~~~~~ 196 (475)
T TIGR00924 171 ---------HVGFNLAAVGMVIGLLTFFAGRHMLR 196 (475)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHcccccc
Confidence 45566666666666666666655553
No 149
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.71 E-value=0.00018 Score=75.63 Aligned_cols=146 Identities=10% Similarity=-0.153 Sum_probs=97.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.+...+...+..|+.+++.+++.+ .+-+.+++++.+++.+..+.... ...
T Consensus 67 g~~~s~~~~~~~~~~~~~G~l~Dr~g~-----------r~~l~~~~~~~~~~~~~~~~~~~----------------~~~ 119 (467)
T PRK09556 67 GMIGLGFSITYGVGKTLVGYYADGKNT-----------KQFLPFLLILSAICMLGFGASLG----------------SGS 119 (467)
T ss_pred HHHHHHHHHHHHHHHhhhhhHhhccCc-----------cchHHHHHHHHHHHHHHHHHHHh----------------ccc
Confidence 344555555556677777777553322 23466777777766655554310 011
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 432 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~ 432 (469)
.+.+.++...++.|++|.+..|.....+.+..|++.||.++|++.....+|..+++.+......... ..+|
T Consensus 120 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~---~~~~------ 190 (467)
T PRK09556 120 VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF---DGHV------ 190 (467)
T ss_pred chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhc---cCcc------
Confidence 3567788889999999999999999999999999999999999999999999999887755432100 0123
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHh
Q 012167 433 NHYHLERFYWLMCILGGLNFLHFLFWA 459 (469)
Q Consensus 433 n~~~l~~~f~~la~l~l~~~l~~~~~~ 459 (469)
...|...++++++.+++.+++.
T Consensus 191 -----~~~f~~~g~~~~~~~i~~~~~~ 212 (467)
T PRK09556 191 -----IGMFIFPSIIALIIGFIGLRYG 212 (467)
T ss_pred -----hhHHHHHHHHHHHHHHHHHHhC
Confidence 2345666766666655554443
No 150
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=97.69 E-value=0.0013 Score=69.76 Aligned_cols=110 Identities=12% Similarity=0.058 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHH
Q 012167 313 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLA 392 (469)
Q Consensus 313 ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~ 392 (469)
-..++++..+++.+++.+. .+.+-++..-++.|+..............++.+.+.-+..
T Consensus 367 ~~~~~ll~~gl~~~~~p~~---------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a 425 (509)
T KOG2504|consen 367 LFLLTLLIAGLARLFLPFA---------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNA 425 (509)
T ss_pred HHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchH
Confidence 3556666666666454443 2344566666777887777777777888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 012167 393 TSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWA 459 (469)
Q Consensus 393 ~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~ 459 (469)
.|+..+..+++.++|+-+.+.+.+.++ .+++.|...++..+++++++++..
T Consensus 426 ~Gl~l~~~gi~~l~gpPiag~~~d~tg----------------~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 426 YGLLLLFQGIGALVGPPIAGLLYDITG----------------NYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHhHHHHHcCcccceeeeeccC----------------CeeeehhhcChHHHHHHHHHHHhH
Confidence 999999999999999999988776553 134566677777777776666655
No 151
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=97.68 E-value=0.002 Score=65.77 Aligned_cols=112 Identities=10% Similarity=-0.015 Sum_probs=81.6
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
++..+...+..++..|+.+.+.+++.|| +-+.++.++.+++.+...+.
T Consensus 46 ~~~~~~~~~~~~~~~~~~G~l~Dr~grr-----------~~~~~~~~~~~~~~~~~~~~--------------------- 93 (394)
T PRK11652 46 QAVMAAYLLTYGLSQLFYGPLSDRVGRR-----------PVILVGMSIFILGTLVALFA--------------------- 93 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHhcCCh-----------HHHHHHHHHHHHHHHHHHHH---------------------
Confidence 3445555666666777777776544332 23556777666666554432
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
.+.++++...++.+++.....+...++..+..|++.++..++++.+...+|..+++.+.+.+.+
T Consensus 94 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~ 157 (394)
T PRK11652 94 HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT 157 (394)
T ss_pred ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2456677788999999888888888999999999999999999999999999999988877653
No 152
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=97.68 E-value=0.0025 Score=65.87 Aligned_cols=115 Identities=13% Similarity=0.031 Sum_probs=89.2
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167 272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL 351 (469)
Q Consensus 272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~ 351 (469)
.+++.+...+..++..|+..++.+++.+| +-+.+|+++.+++.+...... .
T Consensus 40 ~g~l~s~~~~g~~i~~~~~g~l~~r~G~r-----------~~~~~g~~l~~~g~~l~~~~~------------------~ 90 (410)
T TIGR00885 40 AALVQSAFYGGYFIMAIPAAIFMKKLSYK-----------AGILLGLFLYALGAFLFWPAA------------------E 90 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHHH------------------h
Confidence 35667777778888888887775544332 447788888888876654321 0
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167 352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
..+.++++...++.++|..+..+....++.+.+|++.++..+++.....++|..+++.+...+.
T Consensus 91 ~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 91 IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1256667778899999999999999999999999999999999999999999999998887664
No 153
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=97.67 E-value=0.001 Score=66.53 Aligned_cols=137 Identities=17% Similarity=0.109 Sum_probs=95.2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
++..+...+...+..|+.+.+.+++.|| +-+.+|.++.+++.+.+++.+
T Consensus 41 g~~~s~~~~~~~~~~~~~G~l~d~~G~r-----------~~~~~~~~~~~~~~~~~~~~~-------------------- 89 (377)
T TIGR00890 41 AIWFTLLLIGLAMSMPVGGLLADKFGPR-----------AVAMLGGILYGLGFTFYAIAD-------------------- 89 (377)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHcCcc-----------chhHHhHHHHHHHHHHHHHHH--------------------
Confidence 4556667777778888888876655443 235577888888777766552
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 432 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~ 432 (469)
+.+.+....++.++++....+.....+.+..|+ .|+.+++++....++|..+++.+...+.+. .+|
T Consensus 90 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~------ 155 (377)
T TIGR00890 90 -SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGGYGLGSFILSPLITSVINL------EGV------ 155 (377)
T ss_pred -HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-ccHHHHHHHHHhcchhHhHHHHHHHHHHhc------ccH------
Confidence 455666777899999998888888888888875 599999999999999988765555443320 123
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHh
Q 012167 433 NHYHLERFYWLMCILGGLNFLHFLFWA 459 (469)
Q Consensus 433 n~~~l~~~f~~la~l~l~~~l~~~~~~ 459 (469)
...|++.++++++..+..+++.
T Consensus 156 -----~~~f~~~~~~~~~~~~~~~~~~ 177 (377)
T TIGR00890 156 -----PAAFIYMGIIFLLVIVLGAFLI 177 (377)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhe
Confidence 4567777777776665544443
No 154
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.67 E-value=0.00042 Score=72.66 Aligned_cols=139 Identities=16% Similarity=0.135 Sum_probs=95.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 012167 274 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI 353 (469)
Q Consensus 274 ~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ 353 (469)
.+.+...+..++..++.+++.+++.+| +-+.++.++.+++.+...+.. ..
T Consensus 80 ~~~s~~~~~~~~~~~~~g~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~-------------------~~ 129 (465)
T TIGR00894 80 LILSSHFYGQIIIQIPVGYLAGKYVFK-----------WSIGIGMFLSSVISIVIPWAA-------------------GG 129 (465)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHhCcc-----------hhhHHHHHHHHHHHHHHHHHH-------------------Hc
Confidence 344444455556666666665544332 235566666666655543321 12
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCC
Q 012167 354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN 433 (469)
Q Consensus 354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n 433 (469)
+.++++...+++|++|....|.....+.+..|++.|+.++|++.....+|..+++.+.+.+.+.. .+|
T Consensus 130 ~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~-----~gw------- 197 (465)
T TIGR00894 130 GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW-----GGW------- 197 (465)
T ss_pred CchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CCC-------
Confidence 45678889999999999999999999999999999999999999999999999999988775421 135
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q 012167 434 HYHLERFYWLMCILGGLNFLHFLFW 458 (469)
Q Consensus 434 ~~~l~~~f~~la~l~l~~~l~~~~~ 458 (469)
...|.+.++++++..++++..
T Consensus 198 ----~~~f~i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 198 ----PMIFYVFGIVGCAWSLLWFVF 218 (465)
T ss_pred ----CeehhhhhHHHHHHHHHHHHH
Confidence 224555666666555544443
No 155
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.67 E-value=0.0016 Score=67.87 Aligned_cols=144 Identities=13% Similarity=-0.008 Sum_probs=94.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.++..+...+..++.+++.+++.+| +-+.+|.++.+++.+.++.... ..
T Consensus 64 g~~~~~~~~~~~~~~~~~G~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~~~~~-----------------~~ 115 (438)
T TIGR00712 64 GFALSAISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILSAAVMLLMGFVPW-----------------AT 115 (438)
T ss_pred HHHHHHHHHHHHHhhhccchhhhccCCc-----------eehHHHHHHHHHHHHHHhcccc-----------------cc
Confidence 3444555555556666666665433222 2355677777777666544310 01
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 432 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~ 432 (469)
.+.+.+....++.++++....+...+.+.+..|++.||..+|+++...++|..+++.+........ .+|
T Consensus 116 ~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~-----~~w------ 184 (438)
T TIGR00712 116 SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF-----NDW------ 184 (438)
T ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh-----hhh------
Confidence 244556677888999999888888999999999999999999999999999998887765432211 124
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012167 433 NHYHLERFYWLMCILGGLNFLHFLFWAA 460 (469)
Q Consensus 433 n~~~l~~~f~~la~l~l~~~l~~~~~~~ 460 (469)
...|++.++++++..++.+++.+
T Consensus 185 -----~~~f~~~~~~~~i~~~~~~~~~~ 207 (438)
T TIGR00712 185 -----HAALYFPAICAIIVALFAFAMMR 207 (438)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567777777666554444433
No 156
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.65 E-value=0.004 Score=62.39 Aligned_cols=60 Identities=8% Similarity=0.046 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 357 WVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 357 wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
.+...-.+.++.-....+....++.+..|.+.||..+|+.....+++..+||++.+....
T Consensus 354 ~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 354 VLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 455667888899999999999999999999999999999999999999999999977654
No 157
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=97.64 E-value=0.00078 Score=71.37 Aligned_cols=134 Identities=13% Similarity=0.047 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHH-hhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHH
Q 012167 282 FILILAPVYNHVIIP-FARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVAL 360 (469)
Q Consensus 282 ~iii~~pl~~~l~~p-~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~ 360 (469)
...++.|+.+++-++ +.| .+-+.+|.++.+++.+.+++.. .....+..
T Consensus 62 ~~~~~~~~~G~laDr~~G~-----------r~~~~~g~~~~~~g~~~~~~~~--------------------~~~~ll~~ 110 (489)
T PRK10207 62 LVYGLISIGGYVGDHLLGT-----------KRTIVLGAIVLAIGYFMTGMSL--------------------LKPDLIFI 110 (489)
T ss_pred HHHHHHhhHHHhhhhccch-----------HHHHHHHHHHHHHHHHHHHHhc--------------------cchhHHHH
Confidence 334445566666554 222 2457789988888888777642 00111335
Q ss_pred HHHHHHHHHHHhhhhhHHHHhhccCcc--hhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHH
Q 012167 361 QYLFLGSADLFTLAGMMEFFFTDAPLS--MRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLE 438 (469)
Q Consensus 361 ~~~l~~igE~~i~~~~~~~~~~~aP~~--~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~ 438 (469)
..+++++|+.+..|....++.++-|++ .|+...+++++..++|..+++.+++.+.+.- +| .
T Consensus 111 ~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~------gw-----------~ 173 (489)
T PRK10207 111 ALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF------GY-----------S 173 (489)
T ss_pred HHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh------Ch-----------H
Confidence 678899999999999999999999887 4577899999999999999999999886421 24 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Q 012167 439 RFYWLMCILGGLNFLHFLFWAARYK 463 (469)
Q Consensus 439 ~~f~~la~l~l~~~l~~~~~~~~~~ 463 (469)
+.|++.++..++..+.++...++++
T Consensus 174 ~~F~i~~i~~~~~~~~~~~~~~~~~ 198 (489)
T PRK10207 174 VTYNLCGAGLIIALLVYFACRGMVK 198 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHcchhhc
Confidence 4566555544444555555544443
No 158
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.63 E-value=0.0011 Score=67.66 Aligned_cols=121 Identities=12% Similarity=0.043 Sum_probs=88.5
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167 272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL 351 (469)
Q Consensus 272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~ 351 (469)
.+++.+...+...++.|+.+++.+++.|| +-+.++.++.+++.+.+++..... + ..
T Consensus 53 ~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~~~-----------~--~~ 108 (399)
T PRK05122 53 AGLVISLQYLATLLSRPHAGRYADTLGPK-----------KAVVFGLCGCALSGLLYLLAGLLA-----------A--WP 108 (399)
T ss_pred HHHHHHHHHHHHHHhchhhHhHHhccCCc-----------chHHHHHHHHHHHHHHHHHhhhhh-----------c--cc
Confidence 35666777777788888888887655443 235566666666555444332000 0 01
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
..+.++++...++.|+++....+.....+.+..|++.|+.++|++.....+|..+++.+++.+.+
T Consensus 109 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~ 173 (399)
T PRK05122 109 VLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH 173 (399)
T ss_pred hhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence 13566788889999999999999999999999999999999999988888898888888877643
No 159
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.61 E-value=0.0027 Score=66.52 Aligned_cols=122 Identities=11% Similarity=0.007 Sum_probs=85.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 012167 274 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI 353 (469)
Q Consensus 274 ~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ 353 (469)
+..+...+..++..++.+++.+++.|| +-+.++.++.+++.+.+++.+....... . ....
T Consensus 59 ~~~s~~~ig~~~~~~~~G~l~dr~Grr-----------~~~~~~~~l~~i~~~~~~~~~~~~~~~~-------~--~~~~ 118 (479)
T PRK10077 59 FCVASALIGCIIGGALGGYCSNRFGRR-----------DSLKIAAVLFFISALGSAWPEFGFTSIG-------P--DNTG 118 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHhhcccccccc-------c--cchh
Confidence 344555556667777777776655444 2356677777777666655321100000 0 0112
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167 354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
.+++++...++.|++.....|....++.+..|++.||.++|++.....+|..+++.+.....
T Consensus 119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~ 180 (479)
T PRK10077 119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIA 180 (479)
T ss_pred HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35567788899999999999999999999999999999999999999999998877665543
No 160
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.60 E-value=0.00067 Score=74.16 Aligned_cols=134 Identities=15% Similarity=0.045 Sum_probs=92.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH--HHhhhh----h-c--
Q 012167 272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIK--RKRVAV----N-S-- 342 (469)
Q Consensus 272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~--~~~~~~----~-~-- 342 (469)
.+++.+.+-+...+..++..++- .| ....+-+++|+++.+++.++.++.+.. +++... . +
T Consensus 70 ~G~i~s~~~i~~~~~~i~v~~~~----~r-------~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~ 138 (633)
T TIGR00805 70 SGLINGSYEIGNLLLIIFVSYFG----TK-------LHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS 138 (633)
T ss_pred ceeeeehhhHHHHHHHHHHHHhh----cc-------cCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence 35667777777777777776653 33 122344788999999999888876421 110000 0 0
Q ss_pred ----CCC--C--C----------CC-Cc--chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHH
Q 012167 343 ----GLV--N--S----------SE-PL--PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLA 401 (469)
Q Consensus 343 ----g~~--~--~----------~~-~~--~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~ 401 (469)
.+- + + .. .. ...+..++...+++|+|+....+.+..++.+..|++.|+.++|++.....
T Consensus 139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~ 218 (633)
T TIGR00805 139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV 218 (633)
T ss_pred ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence 000 0 0 00 00 11344566789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhhhcc
Q 012167 402 MGYYFSTVLVSIVNN 416 (469)
Q Consensus 402 iG~~l~~~l~~~~~~ 416 (469)
+|..+|+++++.+.+
T Consensus 219 iG~~lG~llgg~l~~ 233 (633)
T TIGR00805 219 FGPAFGYLLGSFCLQ 233 (633)
T ss_pred hhhHHHHHHHHHHHh
Confidence 999999999887664
No 161
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.59 E-value=0.0066 Score=63.26 Aligned_cols=83 Identities=16% Similarity=0.175 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhh
Q 012167 311 LQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRS 390 (469)
Q Consensus 311 ~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g 390 (469)
.+-+.++++..++..+..++. .|++.+....++.|++|.... ....++++..|++.|+
T Consensus 92 K~vL~l~~l~Wsl~t~L~~fa---------------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ 149 (511)
T TIGR00806 92 KPVLVLQALSFVCVWLLLLLG---------------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQ 149 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHH
Confidence 345677777777777776665 257788999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167 391 LATSLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 391 ~~~gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
+++|++.....+|..+++.+++.+.
T Consensus 150 ratsi~~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 150 RAAAYSRAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999843
No 162
>TIGR00898 2A0119 cation transport protein.
Probab=97.59 E-value=0.00076 Score=71.40 Aligned_cols=132 Identities=13% Similarity=0.103 Sum_probs=97.7
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
++.+++..+..++..++.+++.+++.|| +-+.++.++.+++.+..++.
T Consensus 130 ~~~~s~~~~g~~~g~~~~g~l~Dr~Grr-----------~~~~~~~~~~~i~~~~~~~~--------------------- 177 (505)
T TIGR00898 130 DLTQSCFFVGVLLGSFVFGYLSDRFGRK-----------KVLLLSTLVTAVSGVLTAFS--------------------- 177 (505)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhhccch-----------HHHHHHHHHHHHHHHHHHHc---------------------
Confidence 4566777777777888888776654433 22556666666666555543
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 432 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~ 432 (469)
.+.++++...++.|++.....+....++.+..|++.|+.+++++....++|..+++.++..+. +|
T Consensus 178 ~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---------~w------ 242 (505)
T TIGR00898 178 PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---------DW------ 242 (505)
T ss_pred ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---------HH------
Confidence 256778888999999999999999999999999999999999999999999999888876653 24
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHH
Q 012167 433 NHYHLERFYWLMCILGGLNFLHFL 456 (469)
Q Consensus 433 n~~~l~~~f~~la~l~l~~~l~~~ 456 (469)
...|++.++.+++..+.++
T Consensus 243 -----r~~~~~~~i~~~~~~~~~~ 261 (505)
T TIGR00898 243 -----RWLQLAVSLPTFLFFLLSW 261 (505)
T ss_pred -----HHHHHHHHHHHHHHHHHHH
Confidence 3456666666666555443
No 163
>PRK11043 putative transporter; Provisional
Probab=97.58 E-value=0.0031 Score=64.51 Aligned_cols=136 Identities=10% Similarity=0.004 Sum_probs=92.3
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.++..+...+..++.+++.+++.|| +-+..+.++.+++.+..++.
T Consensus 44 g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------------- 91 (401)
T PRK11043 44 SASLSLFLAGFALGQLLWGPLSDRYGRK-----------PVLLAGLSLFALGSLGMLWV--------------------- 91 (401)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhhcCCc-----------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence 3445555556666777777665543322 34566776776666655543
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 432 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~ 432 (469)
.+.++++...++.+++.....+...+.+.+..|++.++...+......++|..+++.+++.+.+.. +|
T Consensus 92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~------g~------ 159 (401)
T PRK11043 92 ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF------GW------ 159 (401)
T ss_pred cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------Ch------
Confidence 245667777889999888888888899999999999999999888888888888888887765321 24
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHH
Q 012167 433 NHYHLERFYWLMCILGGLNFLHFLF 457 (469)
Q Consensus 433 n~~~l~~~f~~la~l~l~~~l~~~~ 457 (469)
...|++.+++.++..+..+.
T Consensus 160 -----~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 160 -----QAIFATLFAITLLLILPTLR 179 (401)
T ss_pred -----HHHHHHHHHHHHHHHHHHHH
Confidence 34566666666655544433
No 164
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.56 E-value=0.0031 Score=65.99 Aligned_cols=142 Identities=11% Similarity=-0.053 Sum_probs=90.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 012167 274 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI 353 (469)
Q Consensus 274 ~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ 353 (469)
...+...+...+..|+.+++.+++.+| +-+.+|.++.+++.+..++... ...
T Consensus 67 ~~~~~~~i~~~~~~~~~G~l~Dr~g~k-----------~~l~~~~~~~~i~~~~~~~~~~-----------------~~~ 118 (452)
T PRK11273 67 FALSGISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILAAAVMLFMGFVPW-----------------ATS 118 (452)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccCCc-----------hhHHHHHHHHHHHHHHHHhhhc-----------------ccc
Confidence 344455555666677777775544322 2366777777777776665420 012
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHH-HHHhHhhhccccccCCCCCCCcCCCC
Q 012167 354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYF-STVLVSIVNNITSTYRHTPWLFGSNL 432 (469)
Q Consensus 354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l-~~~l~~~~~~~t~~~~~~~w~~~~~~ 432 (469)
+.++++...++.++++....|.....+.+..|++.|+..+|+++....+|..+ ++++...... . .+|
T Consensus 119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~-~-----~gw------ 186 (452)
T PRK11273 119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW-F-----NDW------ 186 (452)
T ss_pred cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-h-----ccH------
Confidence 45566777889999999888887888889999999999999999988888754 4443222211 0 134
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012167 433 NHYHLERFYWLMCILGGLNFLHFLFWAA 460 (469)
Q Consensus 433 n~~~l~~~f~~la~l~l~~~l~~~~~~~ 460 (469)
...|++.++++++..++.+++.+
T Consensus 187 -----~~~f~i~~~~~~~~~~l~~~~~~ 209 (452)
T PRK11273 187 -----HAALYMPAFAAILVALFAFAMMR 209 (452)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHcc
Confidence 34566666666665544444433
No 165
>PRK03893 putative sialic acid transporter; Provisional
Probab=97.56 E-value=0.0038 Score=65.84 Aligned_cols=112 Identities=13% Similarity=0.131 Sum_probs=85.2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.+...+..++..++.+++.+++.|| +-+.++.++.+++.+.+++.
T Consensus 58 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------------- 105 (496)
T PRK03893 58 ASLISAAFISRWFGGLLLGAMGDRYGRR-----------LAMVISIVLFSVGTLACGFA--------------------- 105 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHH---------------------
Confidence 3444555555566667777765544332 23556777777777666653
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
.+.+++....++.+++.....+....++.+..|++.|+..+|++....++|..+++.+.+.+.+
T Consensus 106 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 169 (496)
T PRK03893 106 PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVP 169 (496)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2466778889999999999999999999999999999999999999999999999998887653
No 166
>PRK10489 enterobactin exporter EntS; Provisional
Probab=97.51 E-value=0.0018 Score=66.70 Aligned_cols=118 Identities=13% Similarity=-0.035 Sum_probs=85.4
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167 272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL 351 (469)
Q Consensus 272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~ 351 (469)
.+++.+...+..++..|+.+++.+++.|| +-+.++.++.++++...++... . .
T Consensus 54 ~g~~~~~~~l~~~~~~~~~G~l~dr~g~~-----------~~l~~~~~~~~~~~~~~~~~~~---~-------------~ 106 (417)
T PRK10489 54 VGLSVTLTGGAMFIGLMVGGVLADRYDRK-----------KLILLARGTCGLGFIGLALNAF---L-------------P 106 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhhhcCCc-----------eEEEehHHHHHHHHHHHHHHHH---c-------------C
Confidence 35566677777778888888776655433 1233456666666655443210 0 0
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
..+.+++....++.+++..+..+...+.+.+..|++.++..++++....++|..+|+.+++.+.+
T Consensus 107 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~ 171 (417)
T PRK10489 107 EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA 171 (417)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 12456677788899999988889999999999999999999999999999999999998887653
No 167
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=97.51 E-value=0.0033 Score=60.61 Aligned_cols=88 Identities=11% Similarity=0.206 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHHHH
Q 012167 361 QYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERF 440 (469)
Q Consensus 361 ~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~ 440 (469)
...++|++--++.-..+..+....|++.-|+..|......++|-.+.+.+++++.+..+ ++ ..++.|
T Consensus 358 ~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g-----~y--------~~le~f 424 (459)
T KOG4686|consen 358 SMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG-----SY--------DNLEAF 424 (459)
T ss_pred HHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC-----ch--------hhHHHH
Confidence 45677888878878889999999999999999999999999999999999998876321 12 135778
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 012167 441 YWLMCILGGLNFLHFLFWAAR 461 (469)
Q Consensus 441 f~~la~l~l~~~l~~~~~~~~ 461 (469)
|+.++.+++....+.+.+.|+
T Consensus 425 fl~~~~~aL~svgil~~~N~k 445 (459)
T KOG4686|consen 425 FLIIGLMALTSVGILFYLNKK 445 (459)
T ss_pred HHHHHHHHHHHHHHHhheecc
Confidence 888887888777666665554
No 168
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=97.49 E-value=0.0027 Score=67.47 Aligned_cols=116 Identities=16% Similarity=0.104 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcch--h
Q 012167 312 QRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSM--R 389 (469)
Q Consensus 312 ~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~--~ 389 (469)
+-+.+|.++.+++...+++.. .+.+++....+++++|..+..|....++.++.|++. +
T Consensus 89 ~~~~~g~~~~~ig~~l~~~~~--------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~ 148 (500)
T PRK09584 89 RVIMLGAIVLAIGYALVAWSG--------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRL 148 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhh
Confidence 346678888887776665431 123345567788999999888998999999988643 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012167 390 SLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY 464 (469)
Q Consensus 390 g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~ 464 (469)
+..+++++...++|..+++.+++.+.+.. +| .+.|++.++..++..+.+++..+.++.
T Consensus 149 ~~~~~~~~~~~~iG~~~gp~i~g~l~~~~------g~-----------~~~F~i~~i~~~i~~i~~~~~~~~~~~ 206 (500)
T PRK09584 149 DGAFTMYYMSINIGSFFSMLATPWLAAKY------GW-----------SVAFALSVVGMLITVVNFAFCQRWVKQ 206 (500)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHhh------CH-----------HHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence 45788889999999999999998876411 23 445666666666666666666555544
No 169
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=97.46 E-value=0.002 Score=66.19 Aligned_cols=109 Identities=15% Similarity=0.085 Sum_probs=83.5
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.+...+...++.|+.+++.+++.|| +-+.++.++.+++.+.+++..
T Consensus 41 ~~~~~~~~l~~~l~~~~~G~laDr~grr-----------~vl~~~~~~~~~~~~~~~~~~-------------------- 89 (393)
T PRK11195 41 PLLQMFFVLAYIVLAPFVGAFADSFPKG-----------RVMFIANGIKLLGCLLMLFGI-------------------- 89 (393)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhccCCc-----------hhhHHHHHHHHHHHHHHHHHH--------------------
Confidence 5556667777788889988887655443 235566666655554443321
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
+. +..++++++++.+..|...+.+.+..|++.|+.++|++.....+|..+|+.+++.+.+
T Consensus 90 -~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~ 149 (393)
T PRK11195 90 -HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD 149 (393)
T ss_pred -HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 3456889999999999999999999999999999999999999999999999988753
No 170
>TIGR00901 2A0125 AmpG-related permease.
Probab=97.46 E-value=0.0074 Score=60.61 Aligned_cols=85 Identities=6% Similarity=0.013 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHH
Q 012167 314 IGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLAT 393 (469)
Q Consensus 314 i~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~ 393 (469)
+..+.++.++++..+++.. ...+.+++...+++.++.-.+..+...+++.+.+|++.|+.+.
T Consensus 60 l~~~~~~~~~~~~~l~~~~------------------~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~ 121 (356)
T TIGR00901 60 LVLTQVLLLSLLLILSFLV------------------PSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGS 121 (356)
T ss_pred HHHHHHHHHHHHHHHHcCC------------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHH
Confidence 3456666666665555431 1235666777778888888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhhhcc
Q 012167 394 SLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 394 gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
|+.....++|..+++.++..+..
T Consensus 122 ~~~~~~~~~G~~~~~~l~~~l~~ 144 (356)
T TIGR00901 122 TIYIVGYRAGMLLSGSLALVLAS 144 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999988876653
No 171
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=97.46 E-value=0.003 Score=66.25 Aligned_cols=136 Identities=13% Similarity=0.069 Sum_probs=88.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.+...+...+..|+.+++.+++.+| +-+..|.++.+++.+.+++..
T Consensus 57 ~~~~s~~~~~~~~~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~-------------------- 105 (455)
T TIGR00892 57 AWISSIMLAVLYAGGPISSILVNRFGCR-----------PVVIAGGLLASLGMILASFSS-------------------- 105 (455)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHcCch-----------HHHHhhHHHHHHHHHHHHHhh--------------------
Confidence 4444444455566677777665533322 345667777777766665542
Q ss_pred hhHHHHH-HHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCC
Q 012167 353 ITFLWVA-LQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN 431 (469)
Q Consensus 353 ~s~~wli-~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~ 431 (469)
+.+.++ ...++.++++....+.....+.+..| +.|+..+|++.....+|..+++.+.+.+.+.. +|
T Consensus 106 -~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~------gw----- 172 (455)
T TIGR00892 106 -NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF------GW----- 172 (455)
T ss_pred -hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh------Ch-----
Confidence 233333 23467788888776777777777776 68999999999999999999988887765421 24
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHH
Q 012167 432 LNHYHLERFYWLMCILGGLNFLHFLFW 458 (469)
Q Consensus 432 ~n~~~l~~~f~~la~l~l~~~l~~~~~ 458 (469)
...|++.++++++..+..+++
T Consensus 173 ------r~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 173 ------RGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHh
Confidence 456777777777665544443
No 172
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.44 E-value=0.0043 Score=64.75 Aligned_cols=148 Identities=11% Similarity=0.072 Sum_probs=100.7
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 012167 270 VPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSE 349 (469)
Q Consensus 270 ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~ 349 (469)
+-.+...+++-.-=|++-++..++ .+|. ...+-|..|+.+.++=++....++
T Consensus 406 ~LfGv~~a~~~~gEI~~~ffs~kl----I~ki-------GHv~v~~lgLa~~~~Rf~~~S~L~----------------- 457 (618)
T KOG3762|consen 406 TLFGVVSALCHAGEILFYFFSFKL----IEKI-------GHVNVMYLGLACNVGRFLYYSYLQ----------------- 457 (618)
T ss_pred eeeeehhhhhccchHHHHHHHHHH----HHHh-------cccceeeehhhHHHHHHHHHHHhc-----------------
Confidence 334444444444444444444444 4442 223445677777766666655543
Q ss_pred CcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHH-HHHHHHHHHhHhhhccccccCCCCCCCc
Q 012167 350 PLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASL-AMGYYFSTVLVSIVNNITSTYRHTPWLF 428 (469)
Q Consensus 350 ~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~-~iG~~l~~~l~~~~~~~t~~~~~~~w~~ 428 (469)
|+|..+|.-+++++--..++.+.-+++...+|++++..++|+..... ++|..+|+++++.+.+.- |
T Consensus 458 ----n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f-------g-- 524 (618)
T KOG3762|consen 458 ----NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF-------G-- 524 (618)
T ss_pred ----CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee-------h--
Confidence 46667789999999999999999999999999999999999987744 777777777777765421 1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 012167 429 GSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSS 466 (469)
Q Consensus 429 ~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~~~ 466 (469)
...+|...++.|++..++++.+.+..+++.
T Consensus 525 --------~~ttf~~~giAcl~~l~~~~~iq~~l~~~~ 554 (618)
T KOG3762|consen 525 --------ARTTFRIFGIACLVTLALFISIQLLLKRRG 554 (618)
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 234677778888877777777766665543
No 173
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.43 E-value=0.00043 Score=58.59 Aligned_cols=87 Identities=14% Similarity=0.168 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
+.+.+++...+.+++.+...|...++..|.++++ +|.+..++.+...++|..+++.+.+++.+..+|+..|.+.
T Consensus 50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 123 (141)
T TIGR00880 50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPE------ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFL 123 (141)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh------hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHH
Confidence 3566777788899999999999999999998864 3667889999999999999999999999989999999988
Q ss_pred HHHHHHHHHHHHh
Q 012167 116 TATILLSIPIFLL 128 (469)
Q Consensus 116 ~v~~~i~~ii~~~ 128 (469)
++..+++.+....
T Consensus 124 ~~~~~~~~~~~~~ 136 (141)
T TIGR00880 124 AILALAAFILLAF 136 (141)
T ss_pred HHHHHHHHHHHhh
Confidence 7777666555443
No 174
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.43 E-value=0.0032 Score=66.42 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCC
Q 012167 354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN 433 (469)
Q Consensus 354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n 433 (469)
|.+-++...+++|+.|....|.........=.++.||..+|+|+...++|+.+|+++...+.++.+..+..+|
T Consensus 133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW------- 205 (495)
T KOG2533|consen 133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW------- 205 (495)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc-------
Confidence 5566778889999999999999999999999999999999999999999999999998876443222223345
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHh
Q 012167 434 HYHLERFYWLMCILGGLNFLHFLFWA 459 (469)
Q Consensus 434 ~~~l~~~f~~la~l~l~~~l~~~~~~ 459 (469)
.+.|.+-|+++++.+++.+++.
T Consensus 206 ----~~~FiI~G~i~~~~gi~~f~~l 227 (495)
T KOG2533|consen 206 ----RWLFIIEGVITLVLGIVVFFFL 227 (495)
T ss_pred ----eeehhHHHHHHHHHHheEEEEe
Confidence 5789999999888876554443
No 175
>PTZ00207 hypothetical protein; Provisional
Probab=97.40 E-value=0.0059 Score=65.81 Aligned_cols=118 Identities=6% Similarity=0.032 Sum_probs=86.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchh
Q 012167 310 HLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMR 389 (469)
Q Consensus 310 ~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~ 389 (469)
+.+-+.+|.++.+++.++.++... + ....+.+.+....++.++|+.+..+.....+.+..| +.|
T Consensus 90 ~R~vllig~ll~~iG~ll~ala~~---------~------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~R 153 (591)
T PTZ00207 90 PRPIFVLSMTVFCLGTLLFALTFQ---------E------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNR 153 (591)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhc---------c------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhh
Confidence 334577899999999988887521 0 012367777888999999999999999999999887 678
Q ss_pred hHHHHHHHHHHHHHHHH-HHHhHhhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012167 390 SLATSLSWASLAMGYYF-STVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARY 462 (469)
Q Consensus 390 g~~~gl~~l~~~iG~~l-~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~ 462 (469)
|.++|++....++|+.+ +++...++.. +| ..+|++++++.++..++.+.+.|..
T Consensus 154 G~a~Gi~~~~~gLGsaI~~~l~~~l~~~--------~~-----------~~~fl~l~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 154 GAVVAIMKTFTGLGSAILGSIQLAFFSD--------NT-----------SAYFFFLMSFALVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hH-----------HHHHHHHHHHHHHHHHHHHhheeCC
Confidence 99999999999999976 4444444321 12 3467777888887777666665544
No 176
>PRK10133 L-fucose transporter; Provisional
Probab=97.40 E-value=0.0071 Score=63.11 Aligned_cols=113 Identities=12% Similarity=0.042 Sum_probs=84.4
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.....+...+..|+.+.+.+++.+| +-+.+|+++.+++.+...... ..
T Consensus 64 gl~~~~~~~g~~i~~~~~g~l~dr~G~r-----------~~l~~g~~~~~~~~~l~~~~~------------------~a 114 (438)
T PRK10133 64 GLIQSAFYFGYFIIPIPAGILMKKLSYK-----------AGIITGLFLYALGAALFWPAA------------------EI 114 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHHH------------------hc
Confidence 4455566666777777777775544333 346778888888776643211 01
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhh
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIV 414 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~ 414 (469)
.++++++...+++|+|.....+....++.+..|++.+...++++....++|..+++.++..+
T Consensus 115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888999999999999999999999988888887789999999999999999887654
No 177
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=97.39 E-value=0.0073 Score=62.05 Aligned_cols=115 Identities=18% Similarity=0.094 Sum_probs=80.1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
++..+...+...++.|+.+++.+++.+| +-+..|.++.+++.+...+.. ...
T Consensus 51 g~~~~~~~~~~~i~~~~~g~l~dr~g~k-----------~~l~~~~~~~~~~~~~~~~~~-----------------~~~ 102 (402)
T TIGR00897 51 ASAFTLYGIAAAISAWISGVVAEIIGPL-----------KTMMIGLLLWCVGHAAFIVFG-----------------LGH 102 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcH-----------HHHHHHHHHHHHHHHHHHHHh-----------------ccC
Confidence 4455666667777778877776544332 345677777777655433221 001
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHH-HHHHHhHhhhc
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGY-YFSTVLVSIVN 415 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~-~l~~~l~~~~~ 415 (469)
.+++.++..+++.+++.....+.....+.+..|++.|+.++|++....++|. .+++.+.+...
T Consensus 103 ~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~ 166 (402)
T TIGR00897 103 ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI 166 (402)
T ss_pred ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2455566778889999888888888888899999999999999999999986 57777766544
No 178
>PRK11010 ampG muropeptide transporter; Validated
Probab=97.37 E-value=0.021 Score=60.60 Aligned_cols=132 Identities=17% Similarity=0.210 Sum_probs=90.6
Q ss_pred HHHHHHHHhhhhcccCCCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHH
Q 012167 289 VYNHVIIPFARKVTKTEMGITHLQR-IGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGS 367 (469)
Q Consensus 289 l~~~l~~p~~~r~~~~~~~~s~~~r-i~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~i 367 (469)
+...+|-|+.+|.+... ....++ +.++.++.+++...+++.. ...+.+|+....++.++
T Consensus 60 ~~~~l~gpl~Dr~~~~~--~Grrr~~ll~~~i~~~~~~~~~a~~~------------------~~~~l~~l~~~~~l~~~ 119 (491)
T PRK11010 60 VFKFLWSPLMDRYTPPF--LGRRRGWLLATQLLLLVAIAAMGFLE------------------PGTQLRWLAALAVVIAF 119 (491)
T ss_pred HHHHHHHHHHHcccccC--CCCchHHHHHHHHHHHHHHHHHHHcC------------------CcchHHHHHHHHHHHHH
Confidence 34455666666632110 111122 5567777777776666542 12457788888889999
Q ss_pred HHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHH
Q 012167 368 ADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCIL 447 (469)
Q Consensus 368 gE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l 447 (469)
+-....+...+++.+..|++.|+.++|+......+|..+++.+...+.+.. .+| ...|++.+++
T Consensus 120 ~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~-----~GW-----------r~~f~i~a~l 183 (491)
T PRK11010 120 CSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRY-----LGW-----------QGMYWLMAAL 183 (491)
T ss_pred HHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCH-----------HHHHHHHHHH
Confidence 888899999999999999999999999999999999999988877765310 135 3466777777
Q ss_pred HHHHHHHHH
Q 012167 448 GGLNFLHFL 456 (469)
Q Consensus 448 ~l~~~l~~~ 456 (469)
+++..+..+
T Consensus 184 ~ll~~l~~~ 192 (491)
T PRK11010 184 LIPCIIATL 192 (491)
T ss_pred HHHHHHHHH
Confidence 666654433
No 179
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=97.33 E-value=0.0037 Score=66.36 Aligned_cols=115 Identities=16% Similarity=0.068 Sum_probs=83.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchh
Q 012167 275 LPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPIT 354 (469)
Q Consensus 275 l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s 354 (469)
+++...+..++..++..++.+++.|| +-+.+++++.+++.+++++.. +.....+
T Consensus 61 ~~~~~~ig~~ig~~~~g~l~d~~Grr-----------~~~~~~~~~~~v~~~~~~~~~---------------~~~~~~~ 114 (502)
T TIGR00887 61 VNGSASIGTLAGQLFFGWLADKLGRK-----------RVYGMELIIMIIATVASGLSP---------------GSSPKSV 114 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccH-----------HHHHHHHHHHHHHHHHHHHcc---------------CcccchH
Confidence 45555555556666666665544443 224566666666666555431 0001134
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167 355 FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 355 ~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
.++++...++.|+++....+....++.+.+|++.||.+++++.....+|..+++.+...+.
T Consensus 115 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~ 175 (502)
T TIGR00887 115 MATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL 175 (502)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999999999999999999999999999999999999999888876543
No 180
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.32 E-value=0.004 Score=62.68 Aligned_cols=140 Identities=9% Similarity=-0.003 Sum_probs=87.6
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIG-TGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL 351 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~-~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~ 351 (469)
+++.+...+..++..|+.+++.+++.+| +++. .+.++.+++.+..++.
T Consensus 36 g~~~~~~~~~~~~~~~~~g~l~Dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~-------------------- 84 (375)
T TIGR00899 36 GLFYTGSAIVGIAVSQLLATRSDYQGDR-----------KGLILFCCLLAALACLLFAWN-------------------- 84 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCc-----------hHHHHHHHHHHHHHHHHHHhc--------------------
Confidence 3445556666677788877775543222 2333 3445444444444332
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHH--HHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcC
Q 012167 352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLA--TSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFG 429 (469)
Q Consensus 352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~--~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~ 429 (469)
.+.++++...++++.++....|...+...+..|++.|+.. .+......++|..+++.+++.+.+. -+|
T Consensus 85 -~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~------~~~--- 154 (375)
T TIGR00899 85 -RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG------FGF--- 154 (375)
T ss_pred -chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh------ccc---
Confidence 2455555566777777777788888998888888777643 5777777888999998888776531 124
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012167 430 SNLNHYHLERFYWLMCILGGLNFLHFLFWAAR 461 (469)
Q Consensus 430 ~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~ 461 (469)
...|++.+.++++..++.++..++
T Consensus 155 --------~~~f~~~~~~~~~~~~~~~~~~~~ 178 (375)
T TIGR00899 155 --------TVMFLTAALAFVLCGVLVWLFLPS 178 (375)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 345666677666666555554443
No 181
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.32 E-value=0.0033 Score=73.62 Aligned_cols=63 Identities=8% Similarity=-0.026 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
|+++++...+++++++.+..|...+++.+..|++.++.++|+.....++|..+|+.+++++..
T Consensus 107 s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~ 169 (1140)
T PRK06814 107 SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI 169 (1140)
T ss_pred hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678889999999999999999999999999999999999999999999999999999998764
No 182
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=97.30 E-value=0.013 Score=61.92 Aligned_cols=136 Identities=13% Similarity=0.048 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHH
Q 012167 279 PVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWV 358 (469)
Q Consensus 279 n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wl 358 (469)
..+..++..++.+++.+++.+| +-+.++.++.+++.+..++.. +.+.+
T Consensus 80 ~~~~~~~~~~~~G~l~dr~G~r-----------~~~~~~~~~~~~~~~~~~~~~---------------------s~~~l 127 (476)
T PLN00028 80 SVSGSIFSRLAMGPVCDLYGPR-----------YGSAFLLMLTAPAVFCMSLVS---------------------SATGF 127 (476)
T ss_pred HHHHHHHHHHHHHHHHHHhCCh-----------HHHHHHHHHHHHHHHHHHHhc---------------------CHHHH
Confidence 3334444455666655433322 345667777777766655541 34455
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccC---CCCCCCcCCCCCch
Q 012167 359 ALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTY---RHTPWLFGSNLNHY 435 (469)
Q Consensus 359 i~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~---~~~~w~~~~~~n~~ 435 (469)
+...++.|+++.... .....+.+..|++.||..+|++.....+|..+++.+.+.+...-... +..+|
T Consensus 128 ~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gW--------- 197 (476)
T PLN00028 128 IAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAW--------- 197 (476)
T ss_pred HHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhh---------
Confidence 567788999987654 34567889999999999999998777777777766655443210000 00124
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 012167 436 HLERFYWLMCILGGLNFLHFLFW 458 (469)
Q Consensus 436 ~l~~~f~~la~l~l~~~l~~~~~ 458 (469)
...|++.++++++..++.+++
T Consensus 198 --r~~f~i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 198 --RIAFFVPGLLHIIMGILVLTL 218 (476)
T ss_pred --HHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777665554444
No 183
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=97.27 E-value=0.23 Score=52.94 Aligned_cols=83 Identities=17% Similarity=0.107 Sum_probs=69.6
Q ss_pred CchhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHH
Q 012167 34 GGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFG 113 (469)
Q Consensus 34 ~~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~ 113 (469)
..+.+.+.+.+.+.|++.++...+...+++|.++++ +|..+-++ +.....|+.+++..++++.. +|++.+.
T Consensus 168 a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~------~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~ 238 (521)
T KOG0255|consen 168 APNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPK------QRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFW 238 (521)
T ss_pred hCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcc------hhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHH
Confidence 356888999999999999999999999999999976 36667677 77888889999999998887 8999999
Q ss_pred HHHHHHHHHHHH
Q 012167 114 ISTATILLSIPI 125 (469)
Q Consensus 114 i~~v~~~i~~ii 125 (469)
+..+..++.++.
T Consensus 239 ~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 239 IISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHHH
Confidence 877777666555
No 184
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.24 E-value=0.006 Score=71.31 Aligned_cols=115 Identities=14% Similarity=0.034 Sum_probs=83.1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.++..+..+++.|+.+++.+++.|| +-+.++.++.+++.+...+... .
T Consensus 50 ~~~~~~~~l~~~l~~~~~G~l~Dr~grk-----------~~l~~~~~~~~~~~~~~~~~~~------------------~ 100 (1146)
T PRK08633 50 AIVNALFLLPFLLLSSPAGFLADKFSKN-----------RVIRIVKLFEVGLTLLIVLAYY------------------L 100 (1146)
T ss_pred HHHHHHHHHHHHHHhhhHhhhcccccHH-----------HHHHHHHHHHHHHHHHHHHHHH------------------H
Confidence 3444455555667777777776544433 2244455544444443332210 1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
.++++++...++.|++..+..|...+++.+..|++.|+.++|+.....++|..+|+.+++++..
T Consensus 101 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~ 164 (1146)
T PRK08633 101 GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE 164 (1146)
T ss_pred ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2467788899999999999999999999999999999999999999999999999999888754
No 185
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=97.22 E-value=0.0084 Score=63.11 Aligned_cols=177 Identities=12% Similarity=0.066 Sum_probs=103.2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+.+..+.++..++..|+.+++.++...|. || .++. +..|.+..++++..+++..........+ . +.....
T Consensus 42 ~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GR---Rrp~--il~g~~~~~~~l~ll~~~~~~~~~~~~~--~--~~~~~~ 111 (477)
T TIGR01301 42 SIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GR---RRPF--IAAGAALVAFAVILIGFAADIGHLFGDN--L--DKKTKP 111 (477)
T ss_pred HHHHHHHHHHHHHHHhHeeehhcCCCCCC-CC---hHHH--HHHHHHHHHHHHHHHHhCchhhhhcccc--c--cccchh
Confidence 45667788888899999999888654443 22 1111 3446677777777766543110000000 0 000112
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchh--hHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCc--
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMR--SLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLF-- 428 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~--g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~-- 428 (469)
..+++.+..+.+..++--...+..-+++.|++|++.| +.+.+......++|+.++..++++.....-. ++..
T Consensus 112 ~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~----~~~~~~ 187 (477)
T TIGR01301 112 RAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIF----PFTKTE 187 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc----cccccc
Confidence 2234445555555566666667778999999999876 5788888899999999999888764211000 0000
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012167 429 GSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK 463 (469)
Q Consensus 429 ~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~ 463 (469)
+...-..++...|.+-+++.++..++-++..|.+.
T Consensus 188 ~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 188 ACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 00111124455677767777777776666666654
No 186
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=97.20 E-value=0.014 Score=59.79 Aligned_cols=108 Identities=11% Similarity=-0.031 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHH
Q 012167 314 IGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLAT 393 (469)
Q Consensus 314 i~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~ 393 (469)
+.++.++.++++..+++.+ ...+++++...+++.++......|...+++.+..|++.|+.+.
T Consensus 71 l~~~~~~~~l~~~~l~~~~------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~ 132 (402)
T PRK11902 71 LLLTQVGLAASIAAMAFCP------------------PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGA 132 (402)
T ss_pred HHHHHHHHHHHHHHHHhcC------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHH
Confidence 6666777777777665542 1135666777778888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 012167 394 SLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHF 455 (469)
Q Consensus 394 gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~ 455 (469)
++.....++|..+++.+...+.+.. -+| ...|++.+++.++..+..
T Consensus 133 ~~~~~g~~~g~i~g~~l~~~l~~~~-----~gw-----------~~~f~i~a~~~l~~~l~~ 178 (402)
T PRK11902 133 AVKVLGYRLAMLVSGGLALWLADRV-----LGW-----------GNTYLLMAGLMLAGALTT 178 (402)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhcc-----cCH-----------HHHHHHHHHHHHHHHHHH
Confidence 9999999999999888776664310 134 345666677666555443
No 187
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=97.19 E-value=0.0064 Score=64.36 Aligned_cols=90 Identities=11% Similarity=0.039 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhH
Q 012167 312 QRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSL 391 (469)
Q Consensus 312 ~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~ 391 (469)
+-+.+++++.+++.+.+++....-. .....+.+++...+++|+|+....+....++.+..|++.||.
T Consensus 88 ~~l~~~~~l~~i~~~~~a~~~~~~~-------------~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~ 154 (490)
T PRK10642 88 KILAITIVIMSISTFCIGLIPSYAT-------------IGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGF 154 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHH-------------HHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcH
Confidence 4577888888888888777631000 001122357889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhh
Q 012167 392 ATSLSWASLAMGYYFSTVLVSIV 414 (469)
Q Consensus 392 ~~gl~~l~~~iG~~l~~~l~~~~ 414 (469)
+++++.....+|..+++.+...+
T Consensus 155 ~~~~~~~~~~~G~~lg~~~~~~~ 177 (490)
T PRK10642 155 MGSWLDFGSIAGFVLGAGVVVLI 177 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888887666544
No 188
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=97.19 E-value=0.02 Score=60.05 Aligned_cols=85 Identities=12% Similarity=-0.026 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhh
Q 012167 311 LQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRS 390 (469)
Q Consensus 311 ~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g 390 (469)
.+-+.+++++.++..+..++... ....|.+.++...++.|++ ....+.....+.+..|++.||
T Consensus 100 R~v~~~~~ll~~i~~~~~~~a~~----------------~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG 162 (462)
T PRK15034 100 RRWTVFSTAILIIPCVWLGIAVQ----------------NPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQG 162 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc----------------ccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhH
Confidence 34566777777777766665410 0113677788899999998 557788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHh
Q 012167 391 LATSLSWASLAMGYYFSTVLVS 412 (469)
Q Consensus 391 ~~~gl~~l~~~iG~~l~~~l~~ 412 (469)
+++|++.....+|..++..+..
T Consensus 163 ~A~Gi~~g~G~~G~~l~~~l~p 184 (462)
T PRK15034 163 SALGINGGLGNLGVSVMQLVAP 184 (462)
T ss_pred HHHHHHHHHHhhHHHHHHHHHH
Confidence 9999996545555555444443
No 189
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=97.18 E-value=0.0084 Score=60.25 Aligned_cols=110 Identities=16% Similarity=0.191 Sum_probs=80.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167 272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL 351 (469)
Q Consensus 272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~ 351 (469)
.++..+++.+...+..|+.+++.+++.+| +.+.+|.++.+++.+.. ..
T Consensus 37 ~g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~-~~-------------------- 84 (355)
T TIGR00896 37 AGLLTALPVLCFAVLAPLAPWLARRFGEE-----------RSVAAGLLLIAAGILIR-SA-------------------- 84 (355)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhCch-----------HHHHHHHHHHHHHHHHH-Hh--------------------
Confidence 35667777788888888888876644433 33556666666555443 11
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167 352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
.+.++++...++.+++..+..+.....+.+..| +.|+.++|++.....+|..+++.+...+.
T Consensus 85 -~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~ 146 (355)
T TIGR00896 85 -PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLA 146 (355)
T ss_pred -ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134566677889999998888777788888777 57999999999999999999988877664
No 190
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=97.02 E-value=0.076 Score=54.19 Aligned_cols=87 Identities=17% Similarity=0.223 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhH
Q 012167 312 QRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSL 391 (469)
Q Consensus 312 ~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~ 391 (469)
+-+.+|+++..+..+...+.+ .+... |... ++.++..-=+...+=++..+.+|++..+.
T Consensus 319 ~vl~~~lvi~~~~~~~~~~~~------------------~~~~f-~i~g--ll~g~s~G~~qA~SRSy~~~lvp~~k~~~ 377 (438)
T COG2270 319 PVLMIGLVILSIAALYLIFLE------------------GELDF-WILG--LLVGTSLGGAQASSRSYLARLVPKGKEGR 377 (438)
T ss_pred eeehHHHHHHHHHHHHHHHcc------------------ccHHH-HHHH--HHHHHhcchHHHHHHHHHHHhCCCccccc
Confidence 456677777666665555443 12222 3332 34444444456777799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhccccc
Q 012167 392 ATSLSWASLAMGYYFSTVLVSIVNNITS 419 (469)
Q Consensus 392 ~~gl~~l~~~iG~~l~~~l~~~~~~~t~ 419 (469)
..|++.++.-.++.+||.+.+++.++|+
T Consensus 378 fFglyaltgra~S~~gp~lv~v~t~iTg 405 (438)
T COG2270 378 FFGLYALTGRAASFLGPFLVAVITQITG 405 (438)
T ss_pred eeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988875
No 191
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.01 E-value=0.015 Score=61.48 Aligned_cols=136 Identities=11% Similarity=0.051 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHH
Q 012167 281 IFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVAL 360 (469)
Q Consensus 281 l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~ 360 (469)
....+..++.+++.+++. ...+-+.+|.++.+++.++++..+ .+..++..
T Consensus 56 ~~~~l~~ligG~LaDRil----------Grrr~iliG~il~~lg~lll~~~~--------------------~~~~~~~l 105 (493)
T PRK15462 56 SLVYVTPILGGFLADKVL----------GNRMAVMLGALLMAIGHVVLGASE--------------------IHPSFLYL 105 (493)
T ss_pred HHHHHHHHHHHHHHHHcc----------CcHHHHHHHHHHHHHHHHHHHHhh--------------------cchhHHHH
Confidence 343445556666665542 112336788888887776554321 01112223
Q ss_pred HHHHHHHHHHHhhhhhHHHHhhccCcc--hhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHH
Q 012167 361 QYLFLGSADLFTLAGMMEFFFTDAPLS--MRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLE 438 (469)
Q Consensus 361 ~~~l~~igE~~i~~~~~~~~~~~aP~~--~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~ 438 (469)
...+..+|--+..+...+++.++-|++ .|....++.+....+|+.+++.+.+.+.+.. +| .
T Consensus 106 ~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~------Gw-----------~ 168 (493)
T PRK15462 106 SLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY------SW-----------A 168 (493)
T ss_pred HHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh------Ch-----------H
Confidence 334455565566677778899998875 7899999999999999999999998875411 24 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Q 012167 439 RFYWLMCILGGLNFLHFLFWAARYK 463 (469)
Q Consensus 439 ~~f~~la~l~l~~~l~~~~~~~~~~ 463 (469)
+.|.+.++.++++.+.++...|++.
T Consensus 169 ~~F~iaaigm~l~li~~~~~~~~l~ 193 (493)
T PRK15462 169 MGFGLAAVGMIAGLVIFLCGNRHFT 193 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 4566666666666666655555543
No 192
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=97.00 E-value=0.0059 Score=62.06 Aligned_cols=115 Identities=14% Similarity=0.098 Sum_probs=91.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcc
Q 012167 308 ITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLS 387 (469)
Q Consensus 308 ~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~ 387 (469)
.+|.+=+.+|++++++..+.+++. .|++.+...+++.+.-+-.-.|.....+++.-|++
T Consensus 91 ~npr~fm~~gLilsai~nil~Gfs---------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~ 149 (448)
T COG2271 91 SNPRYFMAFGLILSAIVNILFGFS---------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRK 149 (448)
T ss_pred CCCceeehHHHHHHHHHHHHHhhh---------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCcc
Confidence 456666899999999999998875 26667777888888888888899999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhH--hhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012167 388 MRSLATSLSWASLAMGYYFSTVLV--SIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAA 460 (469)
Q Consensus 388 ~~g~~~gl~~l~~~iG~~l~~~l~--~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~ 460 (469)
.||+..++|+.+.++|+.+.+.+. ..+... .+| ...|++-++++++.+++.+...|
T Consensus 150 eRG~~~siWn~shNiGGal~~~~~~la~~~~~------~~w-----------~~~f~~pgiiaiival~~~~~~r 207 (448)
T COG2271 150 ERGTWWSIWNTSHNIGGALAPLVALLAFFAFH------GGW-----------RAAFYFPGIIAIIVALILLFLLR 207 (448)
T ss_pred ccCceEEEehhhhhcccchHHHHHHHHHHHhc------cch-----------hHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999888 444421 134 34567778887777776655543
No 193
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=96.99 E-value=0.16 Score=54.06 Aligned_cols=84 Identities=18% Similarity=0.246 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhccc-CCcchhHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN-KGWQWGFGI 114 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~-~g~~~~F~i 114 (469)
+...+++|+++.++|.|+..-.+.-++++.-+++ .|...-+.+.+++++|.+++..+.....+. ++|+..+.+
T Consensus 141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~------~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~ 214 (513)
T KOG0254|consen 141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAH------IRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGL 214 (513)
T ss_pred hHHHHHHHHHHhccchhhhhhcchhhHhhcCChh------hhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHH
Confidence 5788999999999999999988888777776543 466777889999999999996555555443 589988877
Q ss_pred HHHHHHHHHHH
Q 012167 115 STATILLSIPI 125 (469)
Q Consensus 115 ~~v~~~i~~ii 125 (469)
..+..++-.+.
T Consensus 215 ~~i~~~~~~~~ 225 (513)
T KOG0254|consen 215 ALIPAVILALG 225 (513)
T ss_pred HHHHHHHHHHH
Confidence 66655444443
No 194
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=96.94 E-value=0.031 Score=59.74 Aligned_cols=118 Identities=14% Similarity=0.112 Sum_probs=88.6
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167 272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL 351 (469)
Q Consensus 272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~ 351 (469)
.+.++....+-.+++.|+.+.+.+++-|| +-+...-++.++..+..++... . .
T Consensus 47 valv~~a~~LP~~Llsl~aG~laDr~drr-----------rili~~~~~~~~~~~~L~~l~~--------~--------~ 99 (524)
T PF05977_consen 47 VALVQAASTLPILLLSLFAGALADRFDRR-----------RILILSQLLRALVALLLAVLAF--------F--------G 99 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccch-----------HHHHHHHHHHHHHHHHHHHHHH--------h--------C
Confidence 45667888888889999988887655433 2234444444444333333321 0 1
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
..++|.++..-++.+++..+..|.-.+.+-++.|++.-..+.++.....+++..+||.+++++..
T Consensus 100 ~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva 164 (524)
T PF05977_consen 100 LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVA 164 (524)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 36777788888999999999999999999999999999999999999999999999988887653
No 195
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=96.81 E-value=0.021 Score=59.84 Aligned_cols=84 Identities=11% Similarity=0.071 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHH
Q 012167 313 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLA 392 (469)
Q Consensus 313 ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~ 392 (469)
-+.+|++.-.+++.+.++.+. -|+.-........-.+..|...+++.+++.++-+|.+
T Consensus 310 ~i~lGl~~~~~~~~~~af~~~----------------------~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v 367 (463)
T KOG2816|consen 310 LISLGLLSEFLQLLLFAFATE----------------------TWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKV 367 (463)
T ss_pred HhhHHHHHHHHHHHHHHHhcc----------------------chhhhHHHHHHHhhcchhHHHHhHHHhhcccccccch
Confidence 467899888888888888741 1444444555555567889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhcccc
Q 012167 393 TSLSWASLAMGYYFSTVLVSIVNNIT 418 (469)
Q Consensus 393 ~gl~~l~~~iG~~l~~~l~~~~~~~t 418 (469)
+++.....++.+.+++.+-+.+...|
T Consensus 368 ~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 368 FGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999999999999999888876655
No 196
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=96.79 E-value=0.02 Score=60.18 Aligned_cols=118 Identities=13% Similarity=0.217 Sum_probs=91.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcc
Q 012167 308 ITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLS 387 (469)
Q Consensus 308 ~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~ 387 (469)
....+-+.++.++.+++-+..-++. ..+.+.++...+++|++|....|....+..+-+|++
T Consensus 100 ~G~r~v~~~~~~~sa~~t~l~P~aa-------------------~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~ 160 (466)
T KOG2532|consen 100 FGARRVFFISGLISALLTLLTPLAA-------------------SIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPN 160 (466)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHH-------------------HhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHH
Confidence 3445668888888887776665543 244556789999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012167 388 MRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAA 460 (469)
Q Consensus 388 ~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~ 460 (469)
.|++..++......+|..++-.+++.+-+.. -+| ...|.+.|+++++-.++++.+.+
T Consensus 161 Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~-----~GW-----------~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 161 ERSTFIAILTAGSQLGTIITMPVSGLLCESS-----LGW-----------PSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhccC-----CCC-----------chHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999887887766421 257 34566677777777766665544
No 197
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=96.79 E-value=0.003 Score=65.51 Aligned_cols=86 Identities=13% Similarity=0.183 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHH-HHHHHHHHHHHHHHHhhccc------CCcc
Q 012167 37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYV-FCLSCGALIAVTFVVWIEDN------KGWQ 109 (469)
Q Consensus 37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y-~~iNiGa~i~~~~~~~l~~~------~g~~ 109 (469)
.+.+++...+.+++.+...|+...++.|+++++ +|.+++++++ ...++|..+||+++|++.++ +||+
T Consensus 308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~------~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~ 381 (418)
T TIGR00889 308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVH------IRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ 381 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence 456677788889999999999999999998854 4678899997 56789999999999999887 4699
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 012167 110 WGFGISTATILLSIPIFLL 128 (469)
Q Consensus 110 ~~F~i~~v~~~i~~ii~~~ 128 (469)
.+|.+.++..++..+++.+
T Consensus 382 ~~f~~~~~~~~i~~~l~~~ 400 (418)
T TIGR00889 382 TMWLFFAGYIAILAVLFMI 400 (418)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999888777666655443
No 198
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=96.79 E-value=0.014 Score=58.79 Aligned_cols=90 Identities=14% Similarity=0.112 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHH
Q 012167 313 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLA 392 (469)
Q Consensus 313 ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~ 392 (469)
-+.+|.++.+++.+..++.... . . ......++++...+++|++.....+....++.+..|++.|+.+
T Consensus 67 ~l~~~~~~~~~~~~~~~~~~~~----~-------~--~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~ 133 (394)
T TIGR00883 67 TLVITLLMMGIGTLLIGLLPSY----A-------T--IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFY 133 (394)
T ss_pred HHHHHHHHHHHHHHHHhhCCCh----h-------h--hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHH
Confidence 3667778777777766654200 0 0 0012234567788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhc
Q 012167 393 TSLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 393 ~gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
++++.....+|..+++.+...+.
T Consensus 134 ~~~~~~~~~~G~~i~~~~~~~~~ 156 (394)
T TIGR00883 134 GSFQQVGAPVGLLLAALTVLLLS 156 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988876654
No 199
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.75 E-value=0.054 Score=59.20 Aligned_cols=90 Identities=14% Similarity=0.173 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhccc----------
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN---------- 105 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~---------- 105 (469)
-..+|++|.++.|+|...+.|--.+.+=|-..++ +....++++|..--+|.++|.+++++.-+-
T Consensus 236 ~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~------~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~ 309 (735)
T KOG3626|consen 236 PFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKK------NSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIG 309 (735)
T ss_pred hHHHHHHHHHHhhcCCCCCccCCCcccccccccc------CCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCC
Confidence 3558899999999999888888777777766554 245688999999999999999999986331
Q ss_pred --------C-CcchhHHHHHHHHHHHHHHHHhcCC
Q 012167 106 --------K-GWQWGFGISTATILLSIPIFLLGSP 131 (469)
Q Consensus 106 --------~-g~~~~F~i~~v~~~i~~ii~~~~~~ 131 (469)
+ -|+++|++++..++++.+.+++.-|
T Consensus 310 it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk 344 (735)
T KOG3626|consen 310 ITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPK 344 (735)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 1 3999999999999888877766433
No 200
>PRK15011 sugar efflux transporter B; Provisional
Probab=96.71 E-value=0.065 Score=54.80 Aligned_cols=91 Identities=11% Similarity=0.074 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchh--hHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCC
Q 012167 354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMR--SLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN 431 (469)
Q Consensus 354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~--g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~ 431 (469)
+.+++.....+.+..+....|...+.+.+..|++-| +.+.++.....++|..+++.+++.+.+.. +|
T Consensus 104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~------gw----- 172 (393)
T PRK15011 104 NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF------SF----- 172 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc------Ch-----
Confidence 344444444445555556778888888887776544 45668888889999999999998875421 34
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012167 432 LNHYHLERFYWLMCILGGLNFLHFLFWAAR 461 (469)
Q Consensus 432 ~n~~~l~~~f~~la~l~l~~~l~~~~~~~~ 461 (469)
...|++.++++++.++..+...+.
T Consensus 173 ------~~~f~~~~~~~~~~~~~~~~~~~~ 196 (393)
T PRK15011 173 ------TVMYLSAAVAFIVCGVMVWLFLPS 196 (393)
T ss_pred ------HHHHHHHHHHHHHHHHHHHhhcCc
Confidence 446777777777766655554443
No 201
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=96.70 E-value=0.045 Score=56.82 Aligned_cols=91 Identities=12% Similarity=0.054 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhH
Q 012167 312 QRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSL 391 (469)
Q Consensus 312 ~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~ 391 (469)
+-+.+++++.+++.+..++..... . ....++.+++...+++|+|+-...|....++.+..|++.||.
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~ 160 (432)
T PRK10406 94 KSMLISVCMMCFGSLVIACLPGYE--T-----------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGF 160 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCch--h-----------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccH
Confidence 346778888887777766642000 0 001345678889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhc
Q 012167 392 ATSLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 392 ~~gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
+++++......|..+++.+...+.
T Consensus 161 ~~~~~~~~~~~G~~~~~~~~~~~~ 184 (432)
T PRK10406 161 YASFQYVTLIGGQLLALLVVVVLQ 184 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888888888776655543
No 202
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=96.57 E-value=0.014 Score=60.38 Aligned_cols=121 Identities=12% Similarity=0.108 Sum_probs=80.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+.+.++..+.-.+..|+.+.+.++..+|+ || .+ .-+.+|.++.+++++.+.... +....
T Consensus 38 g~i~~~~~i~~~i~~p~~G~lsDr~~~r~-Gr---rr--~~i~~~~~~~~i~~~~~~~~~---------------~~~~~ 96 (437)
T TIGR00792 38 GTLFLVARILDAITDPIMGNIVDRTRTRW-GK---FR--PWLLIGAIPFSIVLVLLFTTP---------------DFSAT 96 (437)
T ss_pred HHHHHHHHHHHHhccchheEeeecCCCCC-CC---cc--hhHHHhHHHHHHHHHHHHhCC---------------CCCcc
Confidence 34445555666666777777666544332 11 01 125667777777766655431 00112
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhcc-CcchhhHHHHHHHHHHHHHHHHHHHhHhhh
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDA-PLSMRSLATSLSWASLAMGYYFSTVLVSIV 414 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~a-P~~~~g~~~gl~~l~~~iG~~l~~~l~~~~ 414 (469)
...+|.+..+++.+++..+..+...++..+.+ |++.|+...++......+|..+++.+...+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l 159 (437)
T TIGR00792 97 GKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPL 159 (437)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888899999999888888888888887 468899999998888888888877665443
No 203
>PRK15075 citrate-proton symporter; Provisional
Probab=96.57 E-value=0.091 Score=54.53 Aligned_cols=91 Identities=20% Similarity=0.115 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhH
Q 012167 312 QRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSL 391 (469)
Q Consensus 312 ~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~ 391 (469)
+-+..+.++.+++.+.+++...... .......+++...++.++++....+....++.+..|++.|+.
T Consensus 87 ~~l~~~~~~~~~~~~l~~~~~~~~~-------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~ 153 (434)
T PRK15075 87 KGLIVTLSIMASGTLLIAFVPGYAT-------------IGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGF 153 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHH-------------HHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchH
Confidence 3467788877777777666420000 000011245677899999999888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhc
Q 012167 392 ATSLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 392 ~~gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
+++++.....+|..+++.++..+.
T Consensus 154 ~~~~~~~~~~~g~~~g~~~g~~l~ 177 (434)
T PRK15075 154 YTSWQSASQQVAVVFAALLGYLLN 177 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988887777777776666543
No 204
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=96.54 E-value=0.033 Score=59.39 Aligned_cols=107 Identities=13% Similarity=0.084 Sum_probs=88.1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.+...+...+..++.+++.+.+.|| +-+.++.++..++.++.++.
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk-----------~~l~~~~~~~~iG~ii~~~a--------------------- 139 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRK-----------KTLLLAVVLFLIGAIIIALA--------------------- 139 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence 5667777777777888888877766665 24667788888888777765
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhH
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLV 411 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~ 411 (469)
.++++++...++.|+|--+.+....-++.+.+|++.||.+.++..+...+|-.++-.++
T Consensus 140 ~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~ 198 (513)
T KOG0254|consen 140 PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCIN 198 (513)
T ss_pred hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 26889999999999999999999999999999999999999999999998888883333
No 205
>PTZ00207 hypothetical protein; Provisional
Probab=96.49 E-value=1.4 Score=47.73 Aligned_cols=79 Identities=15% Similarity=0.046 Sum_probs=61.1
Q ss_pred chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHH-HHHHHHhhcccCCcchhHH
Q 012167 35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALI-AVTFVVWIEDNKGWQWGFG 113 (469)
Q Consensus 35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i-~~~~~~~l~~~~g~~~~F~ 113 (469)
.+.+.+++.+.+.++|.+.+.+.....+.++|++ +|..+.++...+.++|+.+ +++..+++.+ +|+..|.
T Consensus 118 ~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~-------~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl 188 (591)
T PTZ00207 118 GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS-------NRGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFF 188 (591)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHH
Confidence 4588889999999999999999888999999973 3567899999999999975 6666666654 5666776
Q ss_pred HHHHHHHHH
Q 012167 114 ISTATILLS 122 (469)
Q Consensus 114 i~~v~~~i~ 122 (469)
+.++..++.
T Consensus 189 ~l~vl~~vv 197 (591)
T PTZ00207 189 FLMSFALVV 197 (591)
T ss_pred HHHHHHHHH
Confidence 665555443
No 206
>PRK09952 shikimate transporter; Provisional
Probab=96.47 E-value=0.051 Score=56.62 Aligned_cols=110 Identities=16% Similarity=0.083 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHH
Q 012167 286 LAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFL 365 (469)
Q Consensus 286 ~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~ 365 (469)
..|+-+.+.-++.+|. ...+-+.+++++.+++.+..++....-. ....+++.++...+++
T Consensus 76 ~~~~g~~~~G~l~Dr~-------Grr~~l~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~R~l~ 135 (438)
T PRK09952 76 FRPLGGVVFGHFGDRL-------GRKRMLMLTVWMMGIATALIGLLPSFST-------------IGWWAPVLLVTLRAIQ 135 (438)
T ss_pred HHhhHHHHHHHHHHhh-------ccHHHHHHHHHHHHHHHHHHhcCCcHHH-------------HHHHHHHHHHHHHHHH
Confidence 3455444444555553 2224466788888887777766521000 0001233477788999
Q ss_pred HHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167 366 GSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 366 ~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
|+++....|....++.+..|++.||.+++.......+|..++..+...+.
T Consensus 136 G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~ 185 (438)
T PRK09952 136 GFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLIS 185 (438)
T ss_pred HhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998877666543
No 207
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=1.3 Score=46.25 Aligned_cols=159 Identities=13% Similarity=0.042 Sum_probs=93.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC--CCC-C
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLV--NSS-E 349 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~--~~~-~ 349 (469)
-.+.+++.+.+-+...+.+..+.++.||.+ + +.-..-+.+|.++..++++..-+- ...+..+. +++ .
T Consensus 278 ~~~~ai~~~~~g~g~v~~g~~~~~l~~rir-~---fg~~~~~~~~~~~~~~~~~li~l~------~p~dap~~~t~~~~~ 347 (461)
T KOG3098|consen 278 TYLIAIYSIGIGLGEVIGGLDFSILSKRIR-G---FGRKPTVLIGIIIHLIGFLLIHLS------FPNDAPLRPTDSPPL 347 (461)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhhhhh-h---cccCcchhHHHHHHHHHHHHHhcc------ccccCCCCCCccccc
Confidence 344566666666666665555555555532 1 333334566666665555443221 11111110 110 0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcC
Q 012167 350 PLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFG 429 (469)
Q Consensus 350 ~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~ 429 (469)
.-+-+...-...++++|+++.+.....+..+.... ++-|..+-++.-+..++++-++.+..+..
T Consensus 348 ~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~--------------- 411 (461)
T KOG3098|consen 348 LFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL--------------- 411 (461)
T ss_pred ccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh---------------
Confidence 11123434456679999999999999999999999 55566777788887888877654443322
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012167 430 SNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK 463 (469)
Q Consensus 430 ~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~ 463 (469)
.+..+.+...+++.+..+++..+.++.+
T Consensus 412 ------~l~~~~l~~~i~~~i~~~~~~~~~~~~~ 439 (461)
T KOG3098|consen 412 ------LLYIYTLGLPIFCVIATTIFFIVAERTQ 439 (461)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233456677788888888887777764
No 208
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=96.25 E-value=0.082 Score=54.00 Aligned_cols=139 Identities=11% Similarity=0.093 Sum_probs=80.6
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+.+.++..+...+..|+.+++.+++.|| +.+..+++..+++........... ...
T Consensus 41 g~~~~~~~l~~~i~~~~~G~l~Dr~grr-----------~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~ 95 (396)
T TIGR00882 41 GIVFSCISLFSILFQPLFGLISDKLGLK-----------KHLLWIISGLLVLFAPFFIYVFGP--------------LLQ 95 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHHHhhh--------------HHH
Confidence 5567777888888999999988766554 122233333333222211110000 000
Q ss_pred hh-HHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCC
Q 012167 353 IT-FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN 431 (469)
Q Consensus 353 ~s-~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~ 431 (469)
.+ .+..+...++.+++.....|...+++.+..++ ++...|......++|..+++.+++.+... +|
T Consensus 96 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-------~~----- 161 (396)
T TIGR00882 96 SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARMFGCVGWALCASIAGILFSI-------DP----- 161 (396)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--cccccchhhhhcccHHHHHHHHHhhhhcc-------Cc-----
Confidence 11 22345567788888888888888887776554 34455666666778888888887776431 23
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHH
Q 012167 432 LNHYHLERFYWLMCILGGLNFLHFL 456 (469)
Q Consensus 432 ~n~~~l~~~f~~la~l~l~~~l~~~ 456 (469)
...|++.++++++..++.+
T Consensus 162 ------~~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 162 ------QIVFWLGSGFALILMLLLM 180 (396)
T ss_pred ------hHHHHHHHHHHHHHHHHHH
Confidence 3356666666666554443
No 209
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=96.15 E-value=0.22 Score=53.69 Aligned_cols=121 Identities=12% Similarity=0.117 Sum_probs=82.5
Q ss_pred cccCCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012167 261 MNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAV 340 (469)
Q Consensus 261 ~d~~~~g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~ 340 (469)
+..++|+-+ ...|+...+.+..-+..|+.+++.+-+.||+ -+..|.++..+|.++++-.+
T Consensus 70 I~~diG~~~-~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~-----------~~i~g~~l~vvG~Iv~atA~-------- 129 (599)
T PF06609_consen 70 INADIGGSD-NWSWFSTAWTLASAVSFPFVGRLSDLFGRRY-----------FFIIGSLLGVVGSIVCATAQ-------- 129 (599)
T ss_pred HHHhcCCCc-cchHHHHHHHHHHHHHHHhhHHHHHHhcchH-----------HHHHHHHHHHhHHHHhhcCC--------
Confidence 444555321 2357777788888888899999988776652 35678888888888876442
Q ss_pred hcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167 341 NSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 341 ~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
|+.-++...++.++|--..... ...+.+..|.+.|....++.....-+....++.+...+.
T Consensus 130 -------------~~~~~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~ 190 (599)
T PF06609_consen 130 -------------NMNTFIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA 190 (599)
T ss_pred -------------cHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc
Confidence 3334667778888876555443 455889999999988777666655555556666666554
No 210
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=95.98 E-value=0.092 Score=54.01 Aligned_cols=45 Identities=16% Similarity=-0.121 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHH
Q 012167 356 LWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASL 400 (469)
Q Consensus 356 ~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~ 400 (469)
+++..--.+++..+.-..|++.|+..+..=+...+...|+..+..
T Consensus 360 viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~g 404 (480)
T KOG2563|consen 360 VIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSG 404 (480)
T ss_pred EehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeeh
Confidence 344445567777888888999999999999999999999877743
No 211
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=95.90 E-value=0.026 Score=60.79 Aligned_cols=215 Identities=17% Similarity=0.161 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHHH
Q 012167 38 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTA 117 (469)
Q Consensus 38 ~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~v 117 (469)
...|....+...+ +..++|++++.|+++.... .-+.+..+|..+|+.+|+++++..+. .|+++..
T Consensus 60 lv~ylt~~~~~~~-~~aa~~v~~f~G~~~~~~l--~g~~laD~f~gry~tI~~~s~i~~~G------------~~~lt~~ 124 (571)
T KOG1237|consen 60 LVTYLTLELHASG-GGAANNVNAFGGTQFLLPL--LGAFLADSFLGRYFTINIGSLISLLG------------LFGLTLS 124 (571)
T ss_pred HHHHHHHHhccch-HHHHHHHHHHhhHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHHH------------HHHHHHH
Confidence 3444444444455 8889999999999998632 23467788999999999999987543 5666666
Q ss_pred HHHHHHHHHHhcCCcccccC-CCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCCCC
Q 012167 118 TILLSIPIFLLGSPFYRNKI-PTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQK 196 (469)
Q Consensus 118 ~~~i~~ii~~~~~~~~~~~~-p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~ 196 (469)
.++.++..+-. .+.... ..++|-.....++..++.....-... ..++ ...+ .+
T Consensus 125 a~~~~l~p~~~---~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg---------~r~~--~~~f--Ga---------- 178 (571)
T KOG1237|consen 125 AMIPALLPFMC---KFKPGGNVCESPSKLQLAVLYGALYLIALGAGG---------IRPC--LLAF--GA---------- 178 (571)
T ss_pred HHhhhcCCccc---cCCCCCCcccCcchHHHHHHHHHHHHheeccCC---------CCCc--chhh--cc----------
Confidence 66444433222 111110 11222222233333333332211000 0000 0011 00
Q ss_pred CchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHccc-CCCCcccCCCCC
Q 012167 197 PTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNT-KLGSLKVPPASL 275 (469)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~-~~~g~~ip~~~l 275 (469)
|+ +++...++++ .....+.|..++|..+.+..|+..++. +..|+.+-++..
T Consensus 179 -------------dQ-------fd~~~~~~~~--------~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~ 230 (571)
T KOG1237|consen 179 -------------DQ-------FDELDPVEVK--------GIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIP 230 (571)
T ss_pred -------------cc-------cCccCcchhh--------CcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHH
Confidence 00 0000001111 134567788888888888888765554 446788888888
Q ss_pred CChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 012167 276 PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALV 331 (469)
Q Consensus 276 ~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~ 331 (469)
+..|.+.+++|.+....+.+|. +.-..+..+|.++.+.+.-..+.+
T Consensus 231 ~~~~~lai~iF~~g~~~y~~~~----------p~gsp~t~i~~Vlvaa~~k~~~~~ 276 (571)
T KOG1237|consen 231 TVLNALAILIFLPGFPFYRYKK----------PRGSPKTRIGQVLVAAAFKRKAVV 276 (571)
T ss_pred HHHHHHHHHHHHcCceeEEeeC----------CCCCchhHHHHHHHHHHHHHhccC
Confidence 9999999999988776553322 222256778888888877765433
No 212
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=95.82 E-value=0.073 Score=54.15 Aligned_cols=124 Identities=17% Similarity=0.133 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcc---hh
Q 012167 313 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLS---MR 389 (469)
Q Consensus 313 ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~---~~ 389 (469)
-+.+|.++..+|.+++.+.... . . . ....+...+.....+.++|.-++-|....+..+|-+++ .|
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~-----~--~-~----~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~ 70 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIP-----P--S-L----PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRR 70 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTS-----S--S-C----------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhc-----c--h-h----hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhh
Confidence 3678889999999886655310 0 0 0 11244556777888999999999999999999999987 35
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 012167 390 SLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYS 465 (469)
Q Consensus 390 g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~~ 465 (469)
......++...++|..++..+.+.+.+. .+| ...|++.++.++++.+.|+.-.++|+.+
T Consensus 71 ~~~F~~fY~~in~G~~~~~~~~~~i~~~------~~~-----------~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 71 DSFFNWFYWGINIGSLFSPTLVPYIQQN------YGW-----------FLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHHHHC------S-H-----------HHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred hhhHHHHHHHHhhhhHhhcccchhhccc------cch-----------hhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 5566777888899999998888877641 233 5678888888888888888888888776
No 213
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=95.82 E-value=0.057 Score=54.36 Aligned_cols=112 Identities=16% Similarity=0.119 Sum_probs=85.3
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167 272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL 351 (469)
Q Consensus 272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~ 351 (469)
.+.+.+.-.+.=.+..|+++.+.+.+.|| +. +.+|.+..++++...+..
T Consensus 70 aGflGSsF~ilQ~~sS~~~G~~SD~yGRk-------pv----ll~c~~~va~s~ll~~~S-------------------- 118 (451)
T KOG2615|consen 70 AGFLGSSFSILQFISSPLWGCLSDRYGRK-------PV----LLACLIGVALSYLLWALS-------------------- 118 (451)
T ss_pred hhhHhhHHHHHHHHhhhhhhhhhhhhCch-------HH----HHHHHHHHHHHHHHHHHH--------------------
Confidence 34455555566667888888888777665 33 456777677766665543
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
.+...++...++.|+.--.+++. -+.+.+.++++.|+..|+....+.++|-.+||++++....
T Consensus 119 -~~F~afv~aR~l~Gi~kgnl~v~-rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 119 -RNFAAFVLARFLGGIFKGNLSVI-RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred -HHHHHHHHHHHhhhhccCchHHH-HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 23445677788889888777654 7899999999999999999999999999999999998875
No 214
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.76 E-value=0.097 Score=57.25 Aligned_cols=152 Identities=13% Similarity=0.059 Sum_probs=99.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH----HHhhhh----hcCC--------------CCC---CCC----cchh-HH-HH
Q 012167 310 HLQRIGTGLILSIVAMAVAALVEIK----RKRVAV----NSGL--------------VNS---SEP----LPIT-FL-WV 358 (469)
Q Consensus 310 ~~~ri~~G~~l~~i~~~~~a~~~~~----~~~~~~----~~g~--------------~~~---~~~----~~~s-~~-wl 358 (469)
-.+-|++|.++++++.++.++.+.. +++... .++- ... ++. ...+ +| .+
T Consensus 161 rPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llf 240 (735)
T KOG3626|consen 161 RPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLF 240 (735)
T ss_pred ccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHH
Confidence 3456899999999999999887532 111111 0000 000 001 1122 33 45
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCC--CCCchh
Q 012167 359 ALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGS--NLNHYH 436 (469)
Q Consensus 359 i~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~--~~n~~~ 436 (469)
+..-++.|+|+--+.+.+.+++.+.+-++...++.|+.+....+|-.+|-+++++..+.=.. -+..+. +.+|.+
T Consensus 241 f~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD----~~~~~~~it~~DPr 316 (735)
T KOG3626|consen 241 FLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVD----FGLSPIGITPTDPR 316 (735)
T ss_pred HHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeec----cccCCCCCCCCCcc
Confidence 67889999999999999999999999999999999999999988888877777776552100 000011 222332
Q ss_pred HHH----HHHHHHHHHHHHHHHHHHHhhccccc
Q 012167 437 LER----FYWLMCILGGLNFLHFLFWAARYKYS 465 (469)
Q Consensus 437 l~~----~f~~la~l~l~~~l~~~~~~~~~~~~ 465 (469)
-.- -|++.+++.++.++-++++-|.+.+.
T Consensus 317 WIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~ 349 (735)
T KOG3626|consen 317 WIGAWWLGFLICGALLLFSAVPLFFFPKELPKS 349 (735)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhCcccCccc
Confidence 221 25678888888888888887777654
No 215
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=95.74 E-value=0.87 Score=46.52 Aligned_cols=97 Identities=23% Similarity=0.323 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHH
Q 012167 314 IGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLAT 393 (469)
Q Consensus 314 i~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~ 393 (469)
|-.|.++.+.+...+...-.. .+. .+ .+.+.....-.......|.+.|+|--......++++.|.+|++.|+.+.
T Consensus 53 I~~G~~~~~~g~~~ap~a~~~---l~~-~~-~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v 127 (403)
T PF03209_consen 53 IWGGTLLQAGGLAIAPFALLL---LAE-SG-QQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVV 127 (403)
T ss_pred hHHHHHHHHHHHHHHHHHHHH---Hcc-cc-cccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhH
Confidence 667888777777666554321 111 00 0000011112223457899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhhhc
Q 012167 394 SLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 394 gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
++.+.+.-+|-.+++.+.+..-
T Consensus 128 ~ivw~Mli~G~iv~ai~~g~lL 149 (403)
T PF03209_consen 128 AIVWVMLIVGIIVSAIVFGRLL 149 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999888877653
No 216
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=95.66 E-value=0.17 Score=51.47 Aligned_cols=61 Identities=5% Similarity=-0.201 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
+.++++..+++++.+.....|...+++.+ +++.|+...|......++|..+++.+++.+.+
T Consensus 93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~ 153 (382)
T TIGR00902 93 NAWLLFIAIGLFALFFSAGMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIG 153 (382)
T ss_pred hHHHHHHHHHHHHHHHccchhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777888888887777887777654 35678889999999999999999998887764
No 217
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=95.52 E-value=0.2 Score=50.99 Aligned_cols=87 Identities=7% Similarity=-0.029 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCc
Q 012167 355 FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNH 434 (469)
Q Consensus 355 ~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~ 434 (469)
..|++...++.++......+....+..+..+++.++.+.+.......+|..+++.+...+.+.. +|
T Consensus 97 ~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~------gw-------- 162 (390)
T TIGR02718 97 AGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF------GQ-------- 162 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CH--------
Confidence 3455555566666666677777778888888888888888888888889999887666554311 34
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 012167 435 YHLERFYWLMCILGGLNFLHFLFW 458 (469)
Q Consensus 435 ~~l~~~f~~la~l~l~~~l~~~~~ 458 (469)
...|++.+++.++..+..+..
T Consensus 163 ---~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 163 ---RPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHc
Confidence 346777777777666655444
No 218
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=95.48 E-value=2.9 Score=42.39 Aligned_cols=77 Identities=14% Similarity=0.142 Sum_probs=48.6
Q ss_pred chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHH
Q 012167 35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGI 114 (469)
Q Consensus 35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i 114 (469)
.+...+.+-..++++|.|+ .|-..+.-++..+.... ....-.+ +. .-+|..+...+.=.+..++||++-...
T Consensus 164 pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r---~~~~V~~--~~--waig~v~ea~law~vm~~~gwr~~l~~ 235 (528)
T KOG0253|consen 164 PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHR---WLLTVMS--FF--WAIGQVFEALLAWGVMSNFGWRYLLFT 235 (528)
T ss_pred CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCC---CcchhHH--HH--HHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4456667777889999999 88888877777665421 1111222 33 345777776666556677899876655
Q ss_pred HHHHH
Q 012167 115 STATI 119 (469)
Q Consensus 115 ~~v~~ 119 (469)
..+-.
T Consensus 236 ~~~pl 240 (528)
T KOG0253|consen 236 SSTPL 240 (528)
T ss_pred HHhHH
Confidence 55433
No 219
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=95.45 E-value=0.17 Score=51.46 Aligned_cols=112 Identities=8% Similarity=-0.118 Sum_probs=67.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC
Q 012167 272 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQR-IGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEP 350 (469)
Q Consensus 272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~r-i~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~ 350 (469)
.+++.++..+..++..|+.+.+.++..|+ ...+| +.++..+. +. .+..
T Consensus 41 iG~~~~~~~l~~~l~~~~~g~l~dr~g~~--------~~~~~~~~~~~~~~--~~---~~~~------------------ 89 (382)
T PRK11128 41 IGLLLGAGLVARFLGSLLIAPRVKDPSQL--------IPALRLLALLTLLF--AV---AFWF------------------ 89 (382)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcch--------HHHHHHHHHHHHHH--HH---HHHH------------------
Confidence 35566777778888888888876654432 11122 22121111 11 1110
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 351 LPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 351 ~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
...+.|.+....++.+++.....|...+.+.+.. +.|+..+|......++|..+++.+++.+.+
T Consensus 90 ~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~--~~~~~a~~~~~~~~~lg~~igp~lgg~l~~ 153 (382)
T PRK11128 90 GAHSFWLLFVAIGLFNLFFSPLVPLTDALANTWQ--KQIGLDYGKVRLWGSIAFVIGSALTGKLVS 153 (382)
T ss_pred hcccHHHHHHHHHHHHHHHcccccHHHHHHHHHH--hhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 0134566666778888888878887777766653 345666666777778888888888887754
No 220
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=95.26 E-value=0.0038 Score=66.84 Aligned_cols=174 Identities=17% Similarity=0.119 Sum_probs=3.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH----Hhhhh-----h--
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKR----KRVAV-----N-- 341 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~----~~~~~-----~-- 341 (469)
+++.+.+-+.-+++..++.++ ..| -+-+|-+++|.++++++.++.++.+..- +.... .
T Consensus 41 G~i~s~~di~~~~~~~~vsy~----g~~-------~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~ 109 (539)
T PF03137_consen 41 GLISSSYDIGSLVVVLFVSYF----GGR-------GHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSI 109 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hhh-------cCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccc
Confidence 445555555555555555443 333 2335679999999999999987765321 11100 0
Q ss_pred -cCCC----------------CCCC-CcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHH
Q 012167 342 -SGLV----------------NSSE-PLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMG 403 (469)
Q Consensus 342 -~g~~----------------~~~~-~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG 403 (469)
..+- +.++ ....-+++++...+++|+|..-+.+.+.+++.|.++++..+.+.|+++....+|
T Consensus 110 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lG 189 (539)
T PF03137_consen 110 SSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILG 189 (539)
T ss_dssp ------------------------------------------SSS-----------------------------------
T ss_pred ccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhcc
Confidence 0000 0000 111234667888999999999999999999999999999999999999999888
Q ss_pred HHHHHHhHhhhccc----ccc--------CCCCCCCcCCCCCchhHHH-HHHHHHHHHHHHHHHHHHHhhccccc
Q 012167 404 YYFSTVLVSIVNNI----TST--------YRHTPWLFGSNLNHYHLER-FYWLMCILGGLNFLHFLFWAARYKYS 465 (469)
Q Consensus 404 ~~l~~~l~~~~~~~----t~~--------~~~~~w~~~~~~n~~~l~~-~f~~la~l~l~~~l~~~~~~~~~~~~ 465 (469)
-.+|-++++.+.++ ... .+|+.|+ ..=| -|++.+++.++.++-+..+=|++...
T Consensus 190 Pa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~Wv--------GAWWLGfli~g~~~~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 190 PALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWV--------GAWWLGFLICGILLFLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhceeCCccccccCCCCCCCCccHH--------HHHHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence 88777666655432 110 1122222 0000 24456667777777777666665444
No 221
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=95.20 E-value=0.22 Score=49.45 Aligned_cols=63 Identities=10% Similarity=0.031 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
-|..+.+..+++.+.|-.+..++.+.++.+..|++.++..+++.....++|..++|++++.+.
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i 70 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI 70 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 467788999999999999999999999999999999999999999999999999999998765
No 222
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=95.20 E-value=0.0045 Score=66.28 Aligned_cols=92 Identities=11% Similarity=0.113 Sum_probs=2.9
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcc-----------
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED----------- 104 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~----------- 104 (469)
....|++|-++.++|...+.+--.+++-|-.++++ -.-+++++|....+|..+|.++++..-.
T Consensus 140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~ 213 (539)
T PF03137_consen 140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPD 213 (539)
T ss_dssp ------------SSS-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhccccCCccceeeeecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCcccccc
Confidence 46888899999999999988888887777666542 3467888999999999999988886532
Q ss_pred ----------cCC-cchhHHHHHHHHHHHHHHHHhcCCcc
Q 012167 105 ----------NKG-WQWGFGISTATILLSIPIFLLGSPFY 133 (469)
Q Consensus 105 ----------~~g-~~~~F~i~~v~~~i~~ii~~~~~~~~ 133 (469)
.+| |+++|.+.++..++..+-++..-|++
T Consensus 214 ~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~l 253 (539)
T PF03137_consen 214 GVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKL 253 (539)
T ss_dssp ----------------------------------------
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence 123 99999999998887776665544433
No 223
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=94.97 E-value=0.068 Score=56.44 Aligned_cols=88 Identities=15% Similarity=0.267 Sum_probs=76.3
Q ss_pred chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCC-cchhHH
Q 012167 35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQWGFG 113 (469)
Q Consensus 35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g-~~~~F~ 113 (469)
.+.+.+|+.-+++++..|+..+..-++.++..|++ +...+|++|.......+.+||++.+.+.+..| .+.+|.
T Consensus 378 ~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g------~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~ 451 (477)
T PF11700_consen 378 KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPG------REAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFL 451 (477)
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCc------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 45677888888999999999999999999999986 34679999999999999999999999988765 889999
Q ss_pred HHHHHHHHHHHHHHh
Q 012167 114 ISTATILLSIPIFLL 128 (469)
Q Consensus 114 i~~v~~~i~~ii~~~ 128 (469)
...+.++++++++..
T Consensus 452 ~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 452 FLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHHHHHHHhh
Confidence 888888888877644
No 224
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=94.94 E-value=0.29 Score=51.37 Aligned_cols=92 Identities=7% Similarity=0.013 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhH
Q 012167 358 VALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHL 437 (469)
Q Consensus 358 li~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l 437 (469)
++-.-++.|++--+++....+..+++.-+..+|+++|++....+++..+++++........+ .
T Consensus 391 l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g----~------------- 453 (488)
T KOG2325|consen 391 LISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSG----P------------- 453 (488)
T ss_pred eeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcC----c-------------
Confidence 34445677778778888999999999999999999999999999999999988877665332 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 012167 438 ERFYWLMCILGGLNFLHFLFWAARYKYSS 466 (469)
Q Consensus 438 ~~~f~~la~l~l~~~l~~~~~~~~~~~~~ 466 (469)
.+.+...+.+.++...+..+..+|....+
T Consensus 454 ~~v~~~~~~~~l~~~~l~~~~~~r~~~~~ 482 (488)
T KOG2325|consen 454 RPVWIILLCLLLVVAALWIVFLKRLVPLK 482 (488)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcccce
Confidence 22344444444444445555555554433
No 225
>PRK09528 lacY galactoside permease; Reviewed
Probab=94.93 E-value=0.029 Score=57.92 Aligned_cols=85 Identities=16% Similarity=0.108 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHH-HHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNY-YVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~-~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
.+.+++...+.+++.+...+.....+.+.++++ .+...+.. +.++.++|..+++.++|++.+.+||+..|.+.
T Consensus 315 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~ 388 (420)
T PRK09528 315 PLEVSILKLLHAFEVPFLLVGVFKYITLNFDVR------LSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLIL 388 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc------ceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHH
Confidence 455666667777777777777777778877653 23334433 45678899999999999999999999999987
Q ss_pred HHHHHHHHHHHH
Q 012167 116 TATILLSIPIFL 127 (469)
Q Consensus 116 ~v~~~i~~ii~~ 127 (469)
++..++..++.+
T Consensus 389 ~~~~~i~~~~~~ 400 (420)
T PRK09528 389 GGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHHHH
Confidence 777766554443
No 226
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=94.78 E-value=3e-05 Score=80.72 Aligned_cols=82 Identities=20% Similarity=0.272 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcc---cCCcchhH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED---NKGWQWGF 112 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~---~~g~~~~F 112 (469)
+.+.+.+++.+.|+|.|+.-+....++.+..+++ .|.....+...+.++|.+++..++-.+.+ +.+|+..+
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~------~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~ 174 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPK------HRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL 174 (451)
T ss_pred cccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccc
Confidence 5788899999999999999999999999887764 35566777888888998888776654433 34599999
Q ss_pred HHHHHHHHHHH
Q 012167 113 GISTATILLSI 123 (469)
Q Consensus 113 ~i~~v~~~i~~ 123 (469)
.++++..++.+
T Consensus 175 ~~~~~~~l~~~ 185 (451)
T PF00083_consen 175 IFGAIPSLLVL 185 (451)
T ss_pred ccccccccccc
Confidence 88776664433
No 227
>PRK11462 putative transporter; Provisional
Probab=94.64 E-value=1.5 Score=46.02 Aligned_cols=84 Identities=14% Similarity=0.042 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccC-cchhhHH
Q 012167 314 IGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAP-LSMRSLA 392 (469)
Q Consensus 314 i~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP-~~~~g~~ 392 (469)
+.+|.+..++++..+..+. +. .......|....|++..++--+....-.++..++++ ++.|+..
T Consensus 83 il~g~i~~~i~~~llf~~p--------~~-------s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l 147 (460)
T PRK11462 83 VLFGALPFGIVCVLAYSTP--------DL-------SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISL 147 (460)
T ss_pred HhHHHHHHHHHHHHHHhCC--------CC-------CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHH
Confidence 5567777777766554331 00 011236788899999999999999999999999999 6999999
Q ss_pred HHHHHHHHHHHHHHHHHhHh
Q 012167 393 TSLSWASLAMGYYFSTVLVS 412 (469)
Q Consensus 393 ~gl~~l~~~iG~~l~~~l~~ 412 (469)
++.-.....+|..+++.+..
T Consensus 148 ~s~r~~~~~iG~~~~~~~~~ 167 (460)
T PRK11462 148 QSWRFVLATAGGMLSTVLMM 167 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999888888887776653
No 228
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=94.55 E-value=1.3 Score=46.64 Aligned_cols=58 Identities=19% Similarity=0.223 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhH
Q 012167 354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLV 411 (469)
Q Consensus 354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~ 411 (469)
+...++...++.|+..-+......=++.+.||++.||.+..+..+...+|.+++..++
T Consensus 115 ~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~ 172 (485)
T KOG0569|consen 115 SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLG 172 (485)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 5667889999999999999999999999999999999999999999999999986665
No 229
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=94.51 E-value=0.63 Score=47.54 Aligned_cols=120 Identities=14% Similarity=0.035 Sum_probs=77.8
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 012167 269 KVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSS 348 (469)
Q Consensus 269 ~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~ 348 (469)
.+.+++...+..+-++....+ -...-++..| ..+.+-..+++++..+-.+..++...
T Consensus 45 ~LS~~q~~ll~aiPil~Gall-Rl~~g~l~dr-------fGgR~~~~~s~~l~~IP~~~~~~a~~--------------- 101 (417)
T COG2223 45 GLSEGQKGLLVAIPILVGALL-RLPYGFLTDR-------FGGRKWTILSMLLLLIPCLGLAFAVT--------------- 101 (417)
T ss_pred CCCHHHHHHHHHHHHHHhHHH-HHHHHhhhcc-------cCchHHHHHHHHHHHHHHHHHHHHcc---------------
Confidence 356676655555554444322 2222333444 34444566777777887777777641
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 349 EPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 349 ~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
..|.|+++..-++.|++-. ....++..+.+.-|++.+|.++|++. ..++|..+..++.+.+..
T Consensus 102 ---~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~ 164 (417)
T COG2223 102 ---YPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAV 164 (417)
T ss_pred ---CCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHH
Confidence 1233556666677777653 33667889999999999999999999 778888877777776654
No 230
>PRK09669 putative symporter YagG; Provisional
Probab=94.46 E-value=0.24 Score=51.60 Aligned_cols=60 Identities=12% Similarity=0.035 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhcc-CcchhhHHHHHHHHHHHHHHHHHHHhHh
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDA-PLSMRSLATSLSWASLAMGYYFSTVLVS 412 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~a-P~~~~g~~~gl~~l~~~iG~~l~~~l~~ 412 (469)
...+|....|++.+++--+..+.-.++..+.+ +++.|+...+.-.....+|+.+++.+..
T Consensus 107 ~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~ 167 (444)
T PRK09669 107 GKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIAL 167 (444)
T ss_pred hHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888777777777888888888 4577888888888888888887766543
No 231
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=94.25 E-value=1.4 Score=39.09 Aligned_cols=62 Identities=10% Similarity=0.110 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167 354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
+.+.+++.-++.|+|+.+.+...-.++.+.+.++.+++..|+++.....+..+|+++.-++.
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999988888888877665543
No 232
>PF13347 MFS_2: MFS/sugar transport protein
Probab=94.08 E-value=0.27 Score=50.92 Aligned_cols=157 Identities=15% Similarity=0.253 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCC-CCchHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHH
Q 012167 282 FILILAPVYNHVIIPFARKVTKTEMG-ITHLQR-IGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVA 359 (469)
Q Consensus 282 ~iii~~pl~~~l~~p~~~r~~~~~~~-~s~~~r-i~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli 359 (469)
.+++..+++|.+.+|+.-...-|.|. ..-.|. +.+|.++.++++..+....- . +........|+.
T Consensus 41 ~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p--------~-----~~~~~~~~~~~~ 107 (428)
T PF13347_consen 41 LILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPP--------A-----GLSFTAKLVWLF 107 (428)
T ss_pred HHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhcccc--------c-----hhhhhhHHHHHH
Confidence 34455567777777755432111000 111111 66788888888887764410 0 001124567888
Q ss_pred HHHHHHHHHHHHhhhhhHHHHhhccCc-chhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHH
Q 012167 360 LQYLFLGSADLFTLAGMMEFFFTDAPL-SMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLE 438 (469)
Q Consensus 360 ~~~~l~~igE~~i~~~~~~~~~~~aP~-~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~ 438 (469)
..|++..++--+....-.++..+.++. +.|....+.-.....+|+.+.+.+...+.+ |+ .++-+..++.
T Consensus 108 ~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~---------~~-g~~~~~~~~~ 177 (428)
T PF13347_consen 108 VFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVS---------WF-GGGDTSNGYR 177 (428)
T ss_pred HHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhh---------hh-ccCccchHHH
Confidence 999999999999999999999999995 789999999888888888766666555442 21 1111111234
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 012167 439 RFYWLMCILGGLNFLHFLFWAAR 461 (469)
Q Consensus 439 ~~f~~la~l~l~~~l~~~~~~~~ 461 (469)
...++.+++.++..++..+..|.
T Consensus 178 ~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 178 WMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHHHHHHhhhhhheeee
Confidence 45556666666666655555555
No 233
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=93.89 E-value=0.81 Score=48.67 Aligned_cols=83 Identities=16% Similarity=0.245 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCC
Q 012167 354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN 433 (469)
Q Consensus 354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n 433 (469)
|+++++...++.|++..-....+...+.+..+++.|+.++.+ ......++.+++.++..+.. +|
T Consensus 170 ~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~W------- 233 (521)
T KOG0255|consen 170 NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------DW------- 233 (521)
T ss_pred cHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------hH-------
Confidence 678899999999999999999999999999999999999999 55555666666656555542 46
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q 012167 434 HYHLERFYWLMCILGGLNFLHFL 456 (469)
Q Consensus 434 ~~~l~~~f~~la~l~l~~~l~~~ 456 (469)
.+.++..++.+++.+++++
T Consensus 234 ----r~~~~~~~~~~~~~~~~~~ 252 (521)
T KOG0255|consen 234 ----RWLFWIISIPSGLFLLLWF 252 (521)
T ss_pred ----HHHHHHHHHHHHHHHHHHH
Confidence 4567777777776665533
No 234
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=93.75 E-value=0.77 Score=48.23 Aligned_cols=157 Identities=11% Similarity=0.084 Sum_probs=89.8
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
++..+...+.-.+..|+++++-. | + .+..+=+.+|.+++++|-++...++.. ..
T Consensus 74 G~viaa~slg~~i~~liF~~Ws~----k---~---~~~k~Pli~s~ii~~~g~llY~~l~~~----------------~~ 127 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGIWSN----K---T---GSVKKPLIVSFLIAIIGNLLYLALAYV----------------PN 127 (488)
T ss_pred hHHHHHHHHHHHhcchhhccccc----c---c---CCcccCHHHHHHHHHHHHHHHHHHHhc----------------cc
Confidence 45555567777777777776521 1 1 222333789999999999888666521 01
Q ss_pred hhHHHHHHHHHHHHHH-HHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcC-C
Q 012167 353 ITFLWVALQYLFLGSA-DLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFG-S 430 (469)
Q Consensus 353 ~s~~wli~~~~l~~ig-E~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~-~ 430 (469)
-+.+++...+++.|+| -.+..--.+.-..+..++++|++ +.......+|..+||.+..++..+-+. +-.|+ + .
T Consensus 128 ~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~--a~~~~~~vlg~ilGp~~q~~f~~Lg~~--G~~i~-~~~ 202 (488)
T KOG2325|consen 128 GVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAF--AATSGGFVLGIILGPTIQLAFTPLGEK--GFMIL-PGL 202 (488)
T ss_pred chHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHH--HHhhhHHHHHHHHhHHHHHHHhhhcCC--ceEEc-Ccc
Confidence 2678899999999999 44444444444444555555554 444444455555555555444433221 12344 3 3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012167 431 NLNHYHLERFYWLMCILGGLNFLHFLFWAARY 462 (469)
Q Consensus 431 ~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~ 462 (469)
.+|..... =|+.+++.++..+...++.|..
T Consensus 203 ~~n~YTap--~w~m~i~~i~~~v~i~~~f~E~ 232 (488)
T KOG2325|consen 203 IFNMYTAP--AWLMAILWIIYIVIILFFFKEV 232 (488)
T ss_pred eEEecchH--HHHHHHHHHHHHHHHHhheeec
Confidence 44433322 2456667777776666665544
No 235
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=93.45 E-value=4.2 Score=41.56 Aligned_cols=91 Identities=14% Similarity=0.049 Sum_probs=71.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcc
Q 012167 308 ITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLS 387 (469)
Q Consensus 308 ~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~ 387 (469)
.+..+-+.+|+.+++++..+..=+. ..-++...+...++++.|--+.-.++..++..+.|++
T Consensus 75 ~gyk~gi~lgL~l~avg~~lF~pAa------------------~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~ 136 (422)
T COG0738 75 LGYKAGIVLGLLLYAVGAALFWPAA------------------SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPE 136 (422)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhh------------------hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCch
Confidence 4445568899999988877654221 1124445667788999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 388 MRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 388 ~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
..+.=+.+.....++|..++|.+++..-.
T Consensus 137 ~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 137 SAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 88888999999999999999988876543
No 236
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=93.08 E-value=1.9 Score=43.43 Aligned_cols=140 Identities=20% Similarity=0.218 Sum_probs=93.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+.+.+++-+..=++.|+..+ +.|| .++.+-+..++++.+++..+ |- -
T Consensus 50 GlLTtLPll~fg~~ap~a~~----Lar~-------~g~er~l~~~Llli~~G~~i-------R~---------------~ 96 (395)
T COG2807 50 GLLTTLPLLAFGLFAPAAPR----LARR-------FGEERSLFLALLLIAAGILI-------RS---------------L 96 (395)
T ss_pred HHHHHHHHHHHHHHHhhhHH----HHHH-------HhhHHHHHHHHHHHHHHHHH-------Hh---------------c
Confidence 34444444444444444433 3444 56667777787777665544 21 1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 432 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~ 432 (469)
.+.+.+...-++.+.|-..+++-.-+++-+.-|++. +.+||+|..+..+|..+++.+...+.... .+|
T Consensus 97 ~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-~~mtglYs~sl~~~aaLaa~lavpla~~~-----~gW------ 164 (395)
T COG2807 97 GGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQHS-----GGW------ 164 (395)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-hhHHhHHHHHHHHHHHHHhhhhhHHHHhh-----ccH------
Confidence 245567788899999999999999999999999876 58999999999999999988877665422 246
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012167 433 NHYHLERFYWLMCILGGLNFLHFLFWAARY 462 (469)
Q Consensus 433 n~~~l~~~f~~la~l~l~~~l~~~~~~~~~ 462 (469)
..-....+.++++++++++-...|+
T Consensus 165 -----~~aL~~WAl~allAl~~WlPq~~r~ 189 (395)
T COG2807 165 -----RGALGFWALLALLALLIWLPQALRE 189 (395)
T ss_pred -----HHHHHHHHHHHHHHHHHHhhhcccc
Confidence 2223345677777777777664443
No 237
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=93.08 E-value=13 Score=39.10 Aligned_cols=54 Identities=9% Similarity=0.001 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHH-HHHHHHHHhHhh
Q 012167 360 LQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLA-MGYYFSTVLVSI 413 (469)
Q Consensus 360 ~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~-iG~~l~~~l~~~ 413 (469)
.+.++.-.++--..=..-|+++...+++.|...-+..-...+ +|-.+|+.+.+.
T Consensus 381 ~~~v~~k~~kYsl~dp~kEmly~pld~e~K~K~Ka~iD~v~~r~Gks~gs~i~~~ 435 (472)
T TIGR00769 381 IQNILSKSTKYSLFDATKEMAYIPLDEEQKVKGKAAIDVVAARLGKSGGALIQQG 435 (472)
T ss_pred HHHHHHHHhhhccccHHHHHhcccCCHHHHHHhHhhhhhhhhhhhhHHHHHHHHH
Confidence 477777788877787888999999999999988887766543 566655554443
No 238
>PRK10429 melibiose:sodium symporter; Provisional
Probab=92.85 E-value=1 Score=47.44 Aligned_cols=115 Identities=10% Similarity=0.057 Sum_probs=71.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhH
Q 012167 276 PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITF 355 (469)
Q Consensus 276 ~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~ 355 (469)
..+..++-.+.-|+++.+.++.-.|+ || .+|. +.+|.+..++++..+.... + . ......
T Consensus 48 ~~i~ri~dai~dp~~G~lsD~t~sr~-Gr---rrp~--il~g~i~~~i~~~llf~~p----------~---~--~~~~~~ 106 (473)
T PRK10429 48 FLVARIWDAINDPIMGWIVNNTRSRW-GK---FKPW--ILIGTLANSVVLFLLFSAH----------L---F--EGTAQY 106 (473)
T ss_pred HHHHHHHHHHhhchheeehhcCCCCC-CC---cchh--HhhhhHHHHHHHHHHHcCC----------C---C--CccHHH
Confidence 33344444455555555555432232 11 1111 5567777777765553221 0 0 012346
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHhhcc-CcchhhHHHHHHHHHHHHHHHHHHHhH
Q 012167 356 LWVALQYLFLGSADLFTLAGMMEFFFTDA-PLSMRSLATSLSWASLAMGYYFSTVLV 411 (469)
Q Consensus 356 ~wli~~~~l~~igE~~i~~~~~~~~~~~a-P~~~~g~~~gl~~l~~~iG~~l~~~l~ 411 (469)
+|....|++..++--+..+.-.++..+++ +++.|....+.-.....+|+.+.+.+.
T Consensus 107 ~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~ 163 (473)
T PRK10429 107 VFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFT 163 (473)
T ss_pred HHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999999988888999999999999 588999988876666677766655443
No 239
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=92.45 E-value=3.3 Score=43.54 Aligned_cols=130 Identities=18% Similarity=0.196 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHH
Q 012167 279 PVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWV 358 (469)
Q Consensus 279 n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wl 358 (469)
-++..++..|+++.+.+++.|| .++..-.+|.++-.+.+.+. .||.
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk--------~~L~~~~~~~~l~~~~~~~~--------------------------~~~~ 116 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRK--------VVLLLPLFGTILPALCLLFQ--------------------------GYWF 116 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhh--------hhHHHHHHHHHHhHHHHHHH--------------------------HHHH
Confidence 3667888999999999888776 33444344444444333321 2455
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHH
Q 012167 359 ALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLE 438 (469)
Q Consensus 359 i~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~ 438 (469)
+. ..=..-+-..+...+++++++.+..+.|....|+...+.+.+..+++.+++...+. . +..
T Consensus 117 ~~-~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~---------~--------~~a 178 (463)
T KOG2816|consen 117 FL-LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF---------L--------GIA 178 (463)
T ss_pred hh-hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh---------c--------Cch
Confidence 43 11122234556678889999999999999999999999999999999888876541 1 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 012167 439 RFYWLMCILGGLNFLHFLFWAA 460 (469)
Q Consensus 439 ~~f~~la~l~l~~~l~~~~~~~ 460 (469)
..|++.++..+++.+...+..+
T Consensus 179 ~~f~ia~~~~~~~~~y~~~~l~ 200 (463)
T KOG2816|consen 179 LVFLIAAASGILSLLYMLLFLP 200 (463)
T ss_pred HHHHHHHHHHHHHHHHHhhccc
Confidence 4566555555555554444433
No 240
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=92.11 E-value=1.5 Score=45.64 Aligned_cols=85 Identities=18% Similarity=0.183 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhcc---Ccchhh
Q 012167 314 IGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDA---PLSMRS 390 (469)
Q Consensus 314 i~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~a---P~~~~g 390 (469)
|.+|.++.+++.+.+++... ...+........++.++|.++.....-+.+.+.+ |++ +|
T Consensus 62 ~~i~~~~~~~~~~~~~~~~~-----------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g 123 (433)
T PF03092_consen 62 MIIGWLLGAVSALVLALLPA-----------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RG 123 (433)
T ss_pred HHHHHHHHHHHHHHHHhccc-----------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hH
Confidence 56777777666666555420 0122333334445556666666555555544444 555 88
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 391 LATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 391 ~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
..++..+...++|++++..+++...+
T Consensus 124 ~lqS~~~~~~~~G~lv~~~l~G~l~~ 149 (433)
T PF03092_consen 124 DLQSFVWGVRSVGSLVGSLLSGPLLD 149 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 89999999999999999888877654
No 241
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=91.20 E-value=0.44 Score=46.35 Aligned_cols=77 Identities=17% Similarity=0.159 Sum_probs=59.3
Q ss_pred HHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCC---cchhHHHHH
Q 012167 40 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG---WQWGFGIST 116 (469)
Q Consensus 40 ~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g---~~~~F~i~~ 116 (469)
=|+++.++++.....--..-++++...+++ |...+|...|...|+|-.+.|++++.+.++-| |--+|.+..
T Consensus 355 Py~~m~~lGLsysllAcslWP~va~~vpE~------qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~ 428 (459)
T KOG4686|consen 355 PYTSMTFLGLSYSLLACSLWPCVASLVPEE------QLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLII 428 (459)
T ss_pred HHHHHHHHhhhHHHHHHHHhhhhhhhCCHH------HhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHH
Confidence 366778888887777666778888888765 57889999999999999999999999988644 555666555
Q ss_pred HHHHHH
Q 012167 117 ATILLS 122 (469)
Q Consensus 117 v~~~i~ 122 (469)
..|.+.
T Consensus 429 ~~~aL~ 434 (459)
T KOG4686|consen 429 GLMALT 434 (459)
T ss_pred HHHHHH
Confidence 555443
No 242
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=90.76 E-value=0.15 Score=54.24 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCC-cchhHHHH
Q 012167 37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQWGFGIS 115 (469)
Q Consensus 37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g-~~~~F~i~ 115 (469)
.+.+..--++++++.|.+-......+.|..+.+ +...+|++.....-+++++||.+++++.+..| |...|..+
T Consensus 388 ~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~------~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~ 461 (509)
T KOG2504|consen 388 YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLE------KLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFC 461 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh------hcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhc
Confidence 455555556677777777777777777887764 47789999999999999999999999999887 99999999
Q ss_pred HHHHHHHHHHHHhcC
Q 012167 116 TATILLSIPIFLLGS 130 (469)
Q Consensus 116 ~v~~~i~~ii~~~~~ 130 (469)
++.++++.+..+..+
T Consensus 462 g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 462 GLCFLLSAVLLLILR 476 (509)
T ss_pred ChHHHHHHHHHHHhH
Confidence 999999886655543
No 243
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=89.36 E-value=6.6 Score=37.70 Aligned_cols=122 Identities=13% Similarity=0.137 Sum_probs=79.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcch
Q 012167 309 THLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSM 388 (469)
Q Consensus 309 s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~ 388 (469)
.|..-+.+|.++..+|+....+.-.++ ....+.|.+.....+.+.|..+.......-..+.-|+ .
T Consensus 64 gp~~~l~iG~~~~~~GY~~~~l~~~~~--------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~ 128 (250)
T PF06813_consen 64 GPWVVLLIGAVLGFVGYGLLWLAVSGR--------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S 128 (250)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCc--------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c
Confidence 444557788888889988877664211 1124555566666777788877777766666678885 6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012167 389 RSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK 463 (469)
Q Consensus 389 ~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~ 463 (469)
||.+.|+--...++++.+=..+...+. ++ +.+.|+++++.+..+..++...+.|..+
T Consensus 129 RG~vvgilk~~~GLSaai~t~i~~~~f-------------~~-----~~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 129 RGTVVGILKGFFGLSAAIFTQIYSAFF-------------GD-----DPSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred cCceehhhhHHHHhHHHHHHHHHHHHc-------------CC-----ChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 999999999988888876444433332 22 1234666777776666665555666664
No 244
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=88.75 E-value=0.97 Score=46.63 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=58.1
Q ss_pred HHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHH-HHHHHHHHHHHHhhcccCCcc------hhHHHH
Q 012167 43 GLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCL-SCGALIAVTFVVWIEDNKGWQ------WGFGIS 115 (469)
Q Consensus 43 ~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~i-NiGa~i~~~~~~~l~~~~g~~------~~F~i~ 115 (469)
+..+=++..|.+......++.+..|++. |.++-+++.... -+|..+|.+++|++.|++|-+ ..|.++
T Consensus 307 ~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~ 380 (400)
T PF03825_consen 307 GQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVF 380 (400)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 3345688888999999999999998763 344555555443 489999999999999987644 556666
Q ss_pred HHHHHHHHHHHHhc
Q 012167 116 TATILLSIPIFLLG 129 (469)
Q Consensus 116 ~v~~~i~~ii~~~~ 129 (469)
++..++..+++.+.
T Consensus 381 a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 381 AVMALVILVLFVIL 394 (400)
T ss_pred HHHHHHHHHHHHhh
Confidence 66666666666553
No 245
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=88.25 E-value=32 Score=35.32 Aligned_cols=60 Identities=10% Similarity=0.031 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167 356 LWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 356 ~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
..++.+|.+.+.----...++++|.++.||+...|++|.+.+....+|+-.=..++..+.
T Consensus 370 il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~ 429 (510)
T KOG3574|consen 370 ILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLA 429 (510)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhc
Confidence 345567888888888888999999999999999999999999888887665444444433
No 246
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=87.56 E-value=1.1 Score=46.56 Aligned_cols=151 Identities=17% Similarity=0.212 Sum_probs=98.4
Q ss_pred cCCCCCCChhHHHH---HHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 012167 270 VPPASLPVFPVIFI---LILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVN 346 (469)
Q Consensus 270 ip~~~l~~~n~l~i---ii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~ 346 (469)
.|++..+.+|..+- ++.+.+++++=+.+.|| +.++.-++++++|-+++++.. +
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK-----------~vYG~~liImIi~t~~~~~s~----------~--- 136 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRK-----------KVYGKELIIMIICSALSGLSV----------G--- 136 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcch-----------hhhhHHHHHHHHHHHHhccCC----------C---
Confidence 78888787777653 34555666666655554 234555666666655444321 0
Q ss_pred CCCCcchh-HHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCC
Q 012167 347 SSEPLPIT-FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTP 425 (469)
Q Consensus 347 ~~~~~~~s-~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~ 425 (469)
...+.+ .+|+....+++|+|---=+|.+-....+.|-++-||..+++.+.+++.|-..|+.+.-++...-+..
T Consensus 137 --~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~---- 210 (538)
T KOG0252|consen 137 --TTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKI---- 210 (538)
T ss_pred --CCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhcc----
Confidence 012323 4689999999999988889999999999999999999999999999888888777665554332211
Q ss_pred CCcCCCCCchhHHHHHHHHHHHHHHHH
Q 012167 426 WLFGSNLNHYHLERFYWLMCILGGLNF 452 (469)
Q Consensus 426 w~~~~~~n~~~l~~~f~~la~l~l~~~ 452 (469)
+ +..-...|++..|=+.-.++++-+
T Consensus 211 -~-~~~~~~~~ld~vWRl~~glg~vpa 235 (538)
T KOG0252|consen 211 -F-NGPSTYPHLDGVWRIIFGLGAVPA 235 (538)
T ss_pred -C-CCCCCchHHHHHHHHHHHHHHHHH
Confidence 0 111112367877755444444443
No 247
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=87.32 E-value=13 Score=38.92 Aligned_cols=64 Identities=14% Similarity=0.074 Sum_probs=54.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCc-chhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167 352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPL-SMRSLATSLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~-~~~g~~~gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
..+..|....|.+++++--++...-.++..++.+. +.|....+..+....+|+.+...+...+.
T Consensus 109 ~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv 173 (467)
T COG2211 109 TGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLV 173 (467)
T ss_pred CcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888899999999999999999999888876 88999999999999999888777765444
No 248
>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=86.59 E-value=11 Score=34.87 Aligned_cols=99 Identities=12% Similarity=0.085 Sum_probs=60.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHH
Q 012167 277 VFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFL 356 (469)
Q Consensus 277 ~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~ 356 (469)
-.|.+.+.+..++..++.++..+|+ .+..++..+++-..++....+....-........+ +.+....+.
T Consensus 106 G~N~l~m~~~~~~~~~~~~~~l~~~-------~~~~~~~~~F~ag~l~~~~~~~~~~~~l~l~~~~~----~~~~~~~~~ 174 (205)
T PF01891_consen 106 GANALNMGVPPVLVSYLLFRLLRRK-------FPRNIFVAGFLAGFLSVLLAALAVSLVLGLSGTAG----DYPWMALVQ 174 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----cccHHHHHH
Confidence 4677777777777777777766652 22344555555555555554443322222221111 001234455
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHhhccCc
Q 012167 357 WVALQYLFLGSADLFTLAGMMEFFFTDAPL 386 (469)
Q Consensus 357 wli~~~~l~~igE~~i~~~~~~~~~~~aP~ 386 (469)
...+.+.++++.|.+++.....+..+.-|+
T Consensus 175 ~~~~~~~~l~~~Eg~ltg~~v~~l~~~rP~ 204 (205)
T PF01891_consen 175 AYLPSHLLLAFPEGFLTGMVVTFLVVYRPE 204 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 677889999999999999999999888875
No 249
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=85.79 E-value=11 Score=39.41 Aligned_cols=123 Identities=10% Similarity=0.146 Sum_probs=69.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcc
Q 012167 308 ITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLS 387 (469)
Q Consensus 308 ~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~ 387 (469)
.+...|+..++++..+.+++...... + +. +.....+..+..-++.+++..+...+.+.++...-|+
T Consensus 72 i~~~~Ri~~~lv~~~~~~~~~~~l~~-~----------~~--~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~~fp~~- 137 (437)
T TIGR00939 72 IPVTVRLLGGLVILLVVVILVMVLVK-V----------QT--SETGFFVTTMASVVIINSGMALLQGSLFGLAGVFPST- 137 (437)
T ss_pred cCccchhHHHHHHHHHHHHHHhheee-e----------cC--CcchHHHHHHHHHHHHHhhhhhhcccchhhcccCCHH-
Confidence 56667888887766555555433210 0 00 1123455556677788999999989999988865543
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCC--CCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 012167 388 MRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN--LNHYHLERFYWLMCILGGLNFLHFLFWA 459 (469)
Q Consensus 388 ~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~--~n~~~l~~~f~~la~l~l~~~l~~~~~~ 459 (469)
+++.++..+++++.++..+--+... .. +|+ ...+. ..||.+.+++.+++++.|+.+.
T Consensus 138 ----~~~a~~~G~g~aGv~~s~~~ii~~a-~~---------~~~~~~~~~a-~~YF~~a~~v~l~~i~~~~~l~ 196 (437)
T TIGR00939 138 ----YSSAVMSGQGLAGVLTSLAMILVKA-SG---------NDSHGLKKSA-LGYFGTPCVVQLICIVCYLLLP 196 (437)
T ss_pred ----HHHHHHhcchhHHHHHHHHHHHHHH-hc---------CCccchhhhh-hhHHHHHHHHHHHHHHHHHHHh
Confidence 4444555566666665544322211 11 221 22222 3356666667777777776553
No 250
>PRK09848 glucuronide transporter; Provisional
Probab=85.55 E-value=9.8 Score=39.44 Aligned_cols=110 Identities=8% Similarity=0.030 Sum_probs=60.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+.+.....++..+..|+.+++.++..+|+ || .++. +.+|.+..+++...+..+. .+. ...
T Consensus 47 g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~-Gr---~~~~--~~~~~~~~~~~~~~~~~~~---------~~~-----~~~ 106 (448)
T PRK09848 47 GTMLLLVRVFDAFADVFAGRVVDSVNTRW-GK---FRPF--LLFGTAPLMIFSVLVFWVP---------TDW-----SHS 106 (448)
T ss_pred HHHHHHHHHHHHHhhhhheeeeecCCCCC-cC---chHH--HHHHHHHHHHHHHHHHhCc---------CCC-----Ccc
Confidence 34455556666677777777776554432 22 1111 2344444433333322111 000 012
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCc-chhhHHHHHHHHHHHH
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPL-SMRSLATSLSWASLAM 402 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~-~~~g~~~gl~~l~~~i 402 (469)
...+|....+++.+++.-+..+...++..+++++ +.|+...+.-....++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~ 157 (448)
T PRK09848 107 SKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASL 157 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHH
Confidence 3467778888888988888888777877766655 5577776655544333
No 251
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=84.49 E-value=20 Score=37.74 Aligned_cols=80 Identities=15% Similarity=0.068 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhH---HHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167 356 LWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSL---ATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 432 (469)
Q Consensus 356 ~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~---~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~ 432 (469)
.+.+...++.+++.....+..-.+..+..+ +.++. .++..+...++|..+++.+++.+.+.. +|
T Consensus 121 ~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~------~~------ 187 (468)
T TIGR00788 121 KVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKT------LT------ 187 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhc------Cc------
Confidence 334446788889999998999999999887 33333 444444556688888888887765421 24
Q ss_pred CchhHHHHHHHHHHHHHHHHH
Q 012167 433 NHYHLERFYWLMCILGGLNFL 453 (469)
Q Consensus 433 n~~~l~~~f~~la~l~l~~~l 453 (469)
...|++.+++.++..+
T Consensus 188 -----~~~f~~~a~l~ll~~~ 203 (468)
T TIGR00788 188 -----RILFLITAALLLLQLF 203 (468)
T ss_pred -----chHHHHHHHHHHHHHH
Confidence 2356666666666643
No 252
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=83.82 E-value=22 Score=35.94 Aligned_cols=98 Identities=12% Similarity=0.096 Sum_probs=64.5
Q ss_pred ccCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHH-HHHHHHHHHHHhhcccCC
Q 012167 29 CREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLS-CGALIAVTFVVWIEDNKG 107 (469)
Q Consensus 29 c~~~~~~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iN-iGa~i~~~~~~~l~~~~g 107 (469)
|-.........+++|+++-++++.....+--+-...+..+++-++ +-...-|+..-+..| +-++++.+++-++.+..+
T Consensus 113 cl~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~-~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~ 191 (354)
T PF05631_consen 113 CLTKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQ-EWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG 191 (354)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC
Confidence 333344568899999999999999988877776665555444211 124455555543334 445666666667777665
Q ss_pred c--chhHHHHHHHHHHHHHHHH
Q 012167 108 W--QWGFGISTATILLSIPIFL 127 (469)
Q Consensus 108 ~--~~~F~i~~v~~~i~~ii~~ 127 (469)
. ...|..+.++.+++.++..
T Consensus 192 ~g~vaPF~~a~~~l~~~~~~I~ 213 (354)
T PF05631_consen 192 FGPVAPFDAAIVLLAVAAVLIL 213 (354)
T ss_pred CCCcchHHHHHHHHHHHHHHHH
Confidence 5 6889888888877766543
No 253
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=83.40 E-value=7.8 Score=40.34 Aligned_cols=166 Identities=13% Similarity=0.041 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCC
Q 012167 228 KIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMG 307 (469)
Q Consensus 228 k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~ 307 (469)
++++++..+.+..=+.|....+..|-+.++ ..++... .+..+-.-|+.-++.+|+.+...++.-.|++++
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~------~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRR--- 101 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQS-LGVPHKW------SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRR--- 101 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCccc------ccccccccccccceecccccccccccccccccc---
Confidence 445555555555666677666655445432 2222221 344567778999999999999988887776322
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC--CcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccC
Q 012167 308 ITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSE--PLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAP 385 (469)
Q Consensus 308 ~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~--~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP 385 (469)
+| =|.+|.++.+++++........-.... |++. .-+-++...+..+.++-++--++.-..=++..+++-
T Consensus 102 -RP--fI~~~s~~i~~~l~Lig~aaDig~~lg------d~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~ 172 (498)
T KOG0637|consen 102 -RP--FILAGSLLIAVSLFLIGYAADIGLLLG------DNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLAR 172 (498)
T ss_pred -cc--hHHHhhHHHHHHHhhhhhHhhhhHHhc------CCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhcc
Confidence 11 166777777888777665542222211 2211 223566667777777777775555555677777766
Q ss_pred cchhhH-HHHHHHHHHHHHHHHHHHhHh
Q 012167 386 LSMRSL-ATSLSWASLAMGYYFSTVLVS 412 (469)
Q Consensus 386 ~~~~g~-~~gl~~l~~~iG~~l~~~l~~ 412 (469)
...|-. +++.+-++.++||.+|=.+++
T Consensus 173 ~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 173 GDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred ChhhhhccchhHHHHHHhcceeeeeccc
Confidence 555555 999999999999998765554
No 254
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=82.22 E-value=2.9 Score=43.86 Aligned_cols=118 Identities=12% Similarity=0.033 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcch--
Q 012167 311 LQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSM-- 388 (469)
Q Consensus 311 ~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~-- 388 (469)
.+-+..|-++++++.++++..+ ..+...+....+++++|--++-|...++..++=|++-
T Consensus 92 ~~tI~lGail~~iGh~~L~~~~-------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr 152 (498)
T COG3104 92 RRTIVLGAILMAIGHLVLAISS-------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR 152 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhccc-------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc
Confidence 3558899999999999887642 0123456667778889999999988898888877632
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012167 389 RSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY 464 (469)
Q Consensus 389 ~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~ 464 (469)
|-...++++...++|+++++.+.+.+.. |. ....-|-+.++-+.+.++.|++..|+++.
T Consensus 153 rD~gFt~fY~~iNiGsl~~p~i~~~~~~---------~~--------g~~~gF~~aavGm~~gl~~f~~~~r~~~~ 211 (498)
T COG3104 153 RDGGFTLFYMGINIGSLIAPIITGLLAI---------NY--------GWHVGFGLAAVGMIIGLVIFLLGRRHVKG 211 (498)
T ss_pred cCCCccEEEEEeehHHHHHHHHHHHHHH---------hh--------CHHHHHHHHHHHHHHHHHHHHHccchhcC
Confidence 4446677777888999999999988764 21 13456777777777778888888777643
No 255
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=82.04 E-value=73 Score=33.67 Aligned_cols=43 Identities=9% Similarity=-0.047 Sum_probs=38.6
Q ss_pred hhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 374 AGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 374 ~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
-.-++++.+....+.-.+..++..+..++|..+|+.++..+.+
T Consensus 148 ~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 148 LLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3668999999999999999999999999999999988887664
No 256
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=76.75 E-value=26 Score=36.10 Aligned_cols=124 Identities=15% Similarity=0.125 Sum_probs=73.9
Q ss_pred HHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHH
Q 012167 289 VYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSA 368 (469)
Q Consensus 289 l~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~ig 368 (469)
+..++..|+.-++ .+...|+.+..+++++|+++.++.+ ...+.+.-.+..=+-.++|
T Consensus 73 l~~Kl~aP~fi~~------v~y~~Ri~~~~~l~~~g~l~va~~~-----------------~v~~~l~Gv~las~ssg~G 129 (402)
T PF02487_consen 73 LLVKLIAPFFIHR------VPYWIRILICVALSAAGMLLVAFSP-----------------SVWVRLLGVVLASLSSGLG 129 (402)
T ss_pred HHHHHHhHhhhhh------ccchHHHHHHHHHHHHHHhheeecc-----------------chhHHHHHHHHHhhhhhhh
Confidence 4455666665432 5677899999999999999877642 0123333333444445555
Q ss_pred HHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHHHHHHHHHHHH
Q 012167 369 DLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILG 448 (469)
Q Consensus 369 E~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~ 448 (469)
| .+-+.+....-+ ...+.|...++.|+.+|+..-..+.. . ++ .....++....+.
T Consensus 130 E----~tfL~lt~~y~~-----~~l~~wssGTG~aGl~Ga~~y~~lT~-~------g~---------s~~~tll~~~~lp 184 (402)
T PF02487_consen 130 E----VTFLSLTHFYGK-----SSLSAWSSGTGGAGLVGALYYLGLTT-L------GL---------SPRTTLLIMLVLP 184 (402)
T ss_pred H----HHHHHHHHhcCc-----cccccccCCcChhhHHHHHHHHHHHH-h------Cc---------CHHHHHHHHHHHH
Confidence 5 666777655432 35688888899999988876554432 1 11 0123445555666
Q ss_pred HHHHHHHHHHhh
Q 012167 449 GLNFLHFLFWAA 460 (469)
Q Consensus 449 l~~~l~~~~~~~ 460 (469)
++-.+.|+++.+
T Consensus 185 ~~~~~~~f~~L~ 196 (402)
T PF02487_consen 185 AIFLLSYFFLLP 196 (402)
T ss_pred HHHHHHHHHhhc
Confidence 656555555443
No 257
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=74.79 E-value=1.2e+02 Score=32.20 Aligned_cols=39 Identities=8% Similarity=0.192 Sum_probs=30.7
Q ss_pred chhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012167 60 PHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED 104 (469)
Q Consensus 60 a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~ 104 (469)
.+..|.+..+ +..++|..+..+.|+|.++|..++.++.+
T Consensus 167 ~fAN~itt~~------eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 167 GFANEITTVE------EAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHhcCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666543 35579999999999999999999888877
No 258
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=74.57 E-value=0.018 Score=59.92 Aligned_cols=61 Identities=18% Similarity=0.148 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhh
Q 012167 354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIV 414 (469)
Q Consensus 354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~ 414 (469)
+++++....++.|++--...+....++.+.+|++.|+.+.+++.....+|..++..+...+
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~ 161 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV 161 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6778888999999999999999999999999999999999999999999998887776554
No 259
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=71.09 E-value=86 Score=30.74 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHH
Q 012167 359 ALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASL 400 (469)
Q Consensus 359 i~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~ 400 (469)
...+.++-..--+.+|..+-+-.++-|++.|+..|-++-.-.
T Consensus 348 ~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPL 389 (454)
T KOG4332|consen 348 LIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPL 389 (454)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechh
Confidence 445566555556677999999999999999999988765543
No 260
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=70.19 E-value=25 Score=36.32 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=24.2
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHhhhh
Q 012167 272 PASLPVFPVIFILILAPVYNHVIIPFARK 300 (469)
Q Consensus 272 ~~~l~~~n~l~iii~~pl~~~l~~p~~~r 300 (469)
.+.+.++|.+.-+++.|+++.+.+++..|
T Consensus 45 iG~i~s~~~~~~l~~qp~~G~i~Dklg~k 73 (412)
T PF01306_consen 45 IGIIFSAGSLFALLAQPVYGFISDKLGLK 73 (412)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHHhHHHhcchhhhh
Confidence 36678889999999999999998877654
No 261
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=67.35 E-value=6.6 Score=40.42 Aligned_cols=83 Identities=16% Similarity=0.189 Sum_probs=65.5
Q ss_pred HHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhccc-CCcchhHHHHHHH
Q 012167 40 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN-KGWQWGFGISTAT 118 (469)
Q Consensus 40 ~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~-~g~~~~F~i~~v~ 118 (469)
+++.=+++++..|+.....-+..++..|+++ -.++|++|-...-..+++||.+.+.+-+. .+-+.++..-.+.
T Consensus 344 f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vl 417 (438)
T COG2270 344 FWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVL 417 (438)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 4444467999999999999999999999763 35689999999999999999999887663 3456777776677
Q ss_pred HHHHHHHHHh
Q 012167 119 ILLSIPIFLL 128 (469)
Q Consensus 119 ~~i~~ii~~~ 128 (469)
+.+++++++.
T Consensus 418 l~iGl~~L~~ 427 (438)
T COG2270 418 LLIGLLLLLR 427 (438)
T ss_pred HHhhHhhEEe
Confidence 7777666544
No 262
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=66.99 E-value=15 Score=34.17 Aligned_cols=79 Identities=15% Similarity=0.182 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHH-HHHHHHHHHHHHHHhhccc--CCcchhH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVF-CLSCGALIAVTFVVWIEDN--KGWQWGF 112 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~-~iNiGa~i~~~~~~~l~~~--~g~~~~F 112 (469)
..+.+.+...+.+++.|...|...+++.+.+++ . .++...+++... ..++|..+++.+++++... .+|+..|
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A----TERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAF 167 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 466677777778899999999999999999886 2 135566777777 5788888888777766653 5787766
Q ss_pred HHHHHHH
Q 012167 113 GISTATI 119 (469)
Q Consensus 113 ~i~~v~~ 119 (469)
.+..+..
T Consensus 168 ~~~~~~~ 174 (338)
T COG0477 168 LLAALLG 174 (338)
T ss_pred HHHHHHH
Confidence 6544444
No 263
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=66.94 E-value=69 Score=29.53 Aligned_cols=63 Identities=17% Similarity=0.117 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCc-chhhHHHHHHHH-HHHHHHHHHHHhHhhhcc
Q 012167 354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPL-SMRSLATSLSWA-SLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~-~~~g~~~gl~~l-~~~iG~~l~~~l~~~~~~ 416 (469)
+.++++...++.++++....+.....+.+..|+ +.++...+.... ...+|..+++.+...+..
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG 157 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777778999999999999999999999 778888888888 577788888766665543
No 264
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=66.00 E-value=1e+02 Score=32.37 Aligned_cols=58 Identities=19% Similarity=0.099 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167 358 VALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 358 li~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
....-.+.+.+|.|+...---.+...-|++.|+.+..+-.+..-+|-.++.++-+++.
T Consensus 143 ~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV 200 (480)
T KOG2563|consen 143 THTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILV 200 (480)
T ss_pred hHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceec
Confidence 4455578888888876554566677789999998887766665555555555555443
No 265
>PRK07331 cobalt transport protein CbiM; Provisional
Probab=63.94 E-value=98 Score=30.90 Aligned_cols=107 Identities=21% Similarity=0.178 Sum_probs=58.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhcCCC-CCCCC
Q 012167 277 VFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVA-----VNSGLV-NSSEP 350 (469)
Q Consensus 277 ~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~-----~~~g~~-~~~~~ 350 (469)
-.|.+.+.+..++..+++++..+|+. ++..+.+..+++-..++....++...--.... ..+|.. ..+..
T Consensus 107 GaN~l~ma~~~~~v~y~iyr~~~~~~-----~~~~~~~~~~f~gg~l~i~~~al~~al~l~~~~~~~~~~~g~~~~~~~~ 181 (322)
T PRK07331 107 GANCFNMAFIMPFVGYYIYKFIKKWT-----KSKKGEYIGAFIGGYIGINVAALFAAIEFGLQPLLFKDASGLPLYSPYP 181 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCccccccch
Confidence 34666555556677777787776631 22233444455555555555444322111110 011100 00000
Q ss_pred cchhHHHHHHHHHHH-HHHHHHhhhhhHHHHhhccCcch
Q 012167 351 LPITFLWVALQYLFL-GSADLFTLAGMMEFFFTDAPLSM 388 (469)
Q Consensus 351 ~~~s~~wli~~~~l~-~igE~~i~~~~~~~~~~~aP~~~ 388 (469)
...++.-+.+..+.. ++.|.++......|+.+..|+-.
T Consensus 182 ~~~~~~~m~~~hl~i~gi~Eg~iT~~v~~~l~~~~p~ll 220 (322)
T PRK07331 182 LSVTIPAMLLPHLLVAGILEGIFTALVFSFIKRVSPGIL 220 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHh
Confidence 112344466677776 99999999999999999888764
No 266
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=59.45 E-value=1.7e+02 Score=30.33 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167 354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
|++++-...++.|++-.. ...-+++++...|++.--.+.+..-...-+|..+|+++++++.
T Consensus 93 sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllv 153 (412)
T PF01770_consen 93 SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLV 153 (412)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666555666555433 3777899999999999888998888888888888888888765
No 267
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=59.33 E-value=2.3e+02 Score=29.59 Aligned_cols=64 Identities=13% Similarity=-0.009 Sum_probs=49.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167 352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
..|...++...++-=+|=-....+...++-+..|++.||...|.-....++-.++.-.++-+..
T Consensus 353 ~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~ 416 (432)
T PF06963_consen 353 SISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP 416 (432)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3566666666666666666667777888889999999999999999999988888766655443
No 268
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=57.87 E-value=1.5e+02 Score=30.65 Aligned_cols=162 Identities=12% Similarity=0.134 Sum_probs=79.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhH
Q 012167 276 PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITF 355 (469)
Q Consensus 276 ~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~ 355 (469)
..-+...=++..|+.|.+..+ | .|++|.+-.+....+|.++..++..+ +.++-++++...++.
T Consensus 73 ay~P~sLKllWaPiVDs~y~k---~-~GrrksWvvp~q~llG~~mllLs~~v-------------~~~~g~ng~~p~v~~ 135 (510)
T KOG3574|consen 73 AYWPFSLKLLWAPIVDSVYSK---R-FGRRKSWVVPCQYLLGLFMLLLSYLV-------------DRGLGGNGGLPNVVA 135 (510)
T ss_pred hhhHHHHHHHHHhhhHHHHHH---h-hccccceeeehHHHHHHHHHHHhhCC-------------CcccccCCCCcchHH
Confidence 334445667888988876432 2 23334466667777887766554433 111111111111222
Q ss_pred --HHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcccccc-C-CCCCCCcCCC
Q 012167 356 --LWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITST-Y-RHTPWLFGSN 431 (469)
Q Consensus 356 --~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~-~-~~~~w~~~~~ 431 (469)
||+.+--++-+.=++-+..=.+. +--++.-|-+..........|.++|..+.-.... +.. + --++| |.|
T Consensus 136 lt~~f~LLnflaAtQDIAVDgwALt----mLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s-~dF~N~y~rs~--P~~ 208 (510)
T KOG3574|consen 136 LTLLFLLLNFLAATQDIAVDGWALT----MLSRENLGYASTCQSVGQTAGYFLGNVVFLALES-PDFCNTYLRSI--PLD 208 (510)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHH----hcCHhhcCchhHHHHHHHhhhHHhhcceeeEecC-hhhhhHHHhcC--cCc
Confidence 35455556655556444433333 3334445566666666677777776544322211 000 0 00123 321
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012167 432 LNHYHLERFYWLMCILGGLNFLHFLFWAAR 461 (469)
Q Consensus 432 ~n~~~l~~~f~~la~l~l~~~l~~~~~~~~ 461 (469)
-.--.+..|+++.|.+.++...+-.++.|.
T Consensus 209 ~g~ItL~gy~~fwg~~~~vat~Lv~~~kke 238 (510)
T KOG3574|consen 209 QGFITLAGYLWFWGALFIVATTLVALLKKE 238 (510)
T ss_pred cceEEhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 111124556677777777776655555443
No 269
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=56.90 E-value=20 Score=37.59 Aligned_cols=68 Identities=13% Similarity=0.185 Sum_probs=50.5
Q ss_pred cccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHHHHHHHHHH
Q 012167 57 SLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIP 124 (469)
Q Consensus 57 ~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~v~~~i~~i 124 (469)
-+.++....|...+.+.-+-.+..-+.-+.+.|+|.++|.++-||++|.+|-+-.++...+.|+++.+
T Consensus 62 lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~ 129 (538)
T KOG0252|consen 62 LVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSA 129 (538)
T ss_pred HHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHH
Confidence 34556666666554211111233445578889999999999999999999999999999999988876
No 270
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=54.12 E-value=2.1e+02 Score=27.65 Aligned_cols=58 Identities=12% Similarity=0.285 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-----cccCCcchhHHHHHHHHHHHHHHHHhcCCccccc
Q 012167 79 AFFNYYVFCLSCGALIAVTFVVWI-----EDNKGWQWGFGISTATILLSIPIFLLGSPFYRNK 136 (469)
Q Consensus 79 ~~f~~~Y~~iNiGa~i~~~~~~~l-----~~~~g~~~~F~i~~v~~~i~~ii~~~~~~~~~~~ 136 (469)
..-++.-|+-|+|++++...-.+- ..+-.|+..+.+.++..++-++++.+..++++..
T Consensus 6 ~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~ 68 (267)
T PF07672_consen 6 ILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIY 68 (267)
T ss_pred eeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 334445678899999874332111 1123599999998888888888876666666543
No 271
>PRK08319 cobalt transport protein CbiM; Validated
Probab=53.88 E-value=1.4e+02 Score=28.01 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHhhccCcchh
Q 012167 359 ALQYLFLGSADLFTLAGMMEFFFTDAPLSMR 389 (469)
Q Consensus 359 i~~~~l~~igE~~i~~~~~~~~~~~aP~~~~ 389 (469)
.+.+..++++|.++......+..+.-|+=.+
T Consensus 183 ~~~~l~l~~~Eg~itg~~v~~l~~~rP~~l~ 213 (224)
T PRK08319 183 AVTQIPLAIAEGLLTVLIFNYLTKYRPDLLV 213 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHh
Confidence 4566779999999999999999999888664
No 272
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=49.48 E-value=3.2e+02 Score=28.26 Aligned_cols=62 Identities=11% Similarity=0.079 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167 354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
|+|.+..-.+.-|+-.-..++.....+.+..|++.|-+.||.-....++|..++++++-.++
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 56656667777888888888888999999999999999999999999999999998877664
No 273
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=49.06 E-value=2.2e+02 Score=26.86 Aligned_cols=36 Identities=6% Similarity=0.050 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHH-HHHHHHhhhhhHHHHhhccCcchh
Q 012167 354 TFLWVALQYLFL-GSADLFTLAGMMEFFFTDAPLSMR 389 (469)
Q Consensus 354 s~~wli~~~~l~-~igE~~i~~~~~~~~~~~aP~~~~ 389 (469)
+..-+.+..+.. ++.|-++......++.+.-|+++-
T Consensus 182 ~~~~~~~~h~~i~~i~Eg~iT~~~~~~l~~~~~~~~l 218 (230)
T PRK11909 182 SIPAMLFAHLTVAGIVEAIVTGLVVYYLQKADEENLL 218 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHh
Confidence 455677777887 999999999999999998666554
No 274
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=47.50 E-value=53 Score=33.33 Aligned_cols=102 Identities=11% Similarity=0.082 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 432 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~ 432 (469)
-++||.-..|++....-.+..+....-+++.-.++.-|+..|++-+ ++-.+-.++..++.+.. ++ .-++
T Consensus 324 ~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTF---vAl~lQsilT~iVvd~~-------g~-~L~i 392 (433)
T KOG3810|consen 324 QHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTF---VALILQSILTLIVVDDR-------GL-GLDI 392 (433)
T ss_pred cceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHH---HHHHHHHhheEEEEccc-------cc-CCCc
Confidence 3588899999999888888888887777777777888888888766 44445445555554422 22 1111
Q ss_pred Cch--hHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 012167 433 NHY--HLERFYWLMCILGGLNFLHFLFWAARYKYS 465 (469)
Q Consensus 433 n~~--~l~~~f~~la~l~l~~~l~~~~~~~~~~~~ 465 (469)
... -+..||.++|++.++.....+...++-+..
T Consensus 393 r~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~~~~~~~~ 427 (433)
T KOG3810|consen 393 RTQFVVYSSYFIVLGVIFLIGFGIEYLMCRRNKVP 427 (433)
T ss_pred ceeEEEEeehHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 111 134588999999988877766666665544
No 275
>PRK11715 inner membrane protein; Provisional
Probab=44.95 E-value=3.7e+02 Score=28.09 Aligned_cols=46 Identities=22% Similarity=0.316 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 012167 316 TGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEF 379 (469)
Q Consensus 316 ~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~ 379 (469)
-|+++.++.|+...+.|..... ++++ .||.+.|++-++.+--.+++
T Consensus 306 YgiLFI~LTF~~fFlfE~~~~~--------------~iHp----iQYlLVGlAl~lFYLLLLSl 351 (436)
T PRK11715 306 YAILFIALTFAAFFLFELLKKL--------------RIHP----VQYLLVGLALVLFYLLLLSL 351 (436)
T ss_pred HHHHHHHHHHHHHHHHHHhcCc--------------eecH----HHHHHHHHHHHHHHHHHHHH
Confidence 5788888999888888853321 2222 46666666665555444444
No 276
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=43.59 E-value=4.3e+02 Score=28.11 Aligned_cols=93 Identities=15% Similarity=0.154 Sum_probs=59.0
Q ss_pred HHHHHHHHHhhh----hhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCchhHH
Q 012167 363 LFLGSADLFTLA----GMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLE 438 (469)
Q Consensus 363 ~l~~igE~~i~~----~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~~~l~ 438 (469)
++.-.+|+.-+. .-+.|+-++.-.+.-.+..+++.+..+++..+++.+.....+.. +.+. ...++-.+.
T Consensus 152 ~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~-----~~~~--~~~~~~~~~ 224 (509)
T COG3202 152 LFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHR-----DALA--SEFKDLLLQ 224 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhch-----hhHh--HHHHHHHHH
Confidence 344456665543 45688899999999999999999999999999998888776421 0111 011111123
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 012167 439 RFYWLMCILGGLNFLHFLFWAARY 462 (469)
Q Consensus 439 ~~f~~la~l~l~~~l~~~~~~~~~ 462 (469)
..+.+.+.++++..+++....|..
T Consensus 225 ~~~~vi~~~~~i~~~l~~~~~r~i 248 (509)
T COG3202 225 ILFIVIVILGIIAILLYRYINRNV 248 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345555555566666666655543
No 277
>PRK06265 cobalt transport protein CbiM; Validated
Probab=43.56 E-value=2.6e+02 Score=25.63 Aligned_cols=95 Identities=15% Similarity=0.081 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHH-
Q 012167 278 FPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFL- 356 (469)
Q Consensus 278 ~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~- 356 (469)
.|.+.+.+-.++...+.++..||. + ..+...|++-..++....++...--...+. ..+....
T Consensus 102 ~N~l~m~~p~~~~~~~~~~~~~~~------~--~~~~~~~f~~~~l~v~~~~l~~~~~l~l~~---------~~~~~~~~ 164 (199)
T PRK06265 102 VNTLNMALPAVLAGYLFRKLLRRT------P--PPRGLAAFLAGALAVFLAALLCALELALSG---------GFPFVPAA 164 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc------c--chHHHHHHHHHHHHHHHHHHHHHHHHHHcc---------cccHHHHH
Confidence 455555443444455555554431 2 245666777777776665554321111110 0111111
Q ss_pred -HHHHHHHHHHHHHHHhhhhhHHHHhhccCcchh
Q 012167 357 -WVALQYLFLGSADLFTLAGMMEFFFTDAPLSMR 389 (469)
Q Consensus 357 -wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~ 389 (469)
-+.+.++.+++.|.++......+..+.-|+-.+
T Consensus 165 ~~~~~~~~~l~~~Eg~ltg~~v~~l~~~rP~~l~ 198 (199)
T PRK06265 165 KLLGLAHLPLMVIEGIITAFAVSFLARVRPELLK 198 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcc
Confidence 132455666666999999999999998887543
No 278
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=42.37 E-value=4.2e+02 Score=27.64 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012167 316 TGLILSIVAMAVAALVEIKR 335 (469)
Q Consensus 316 ~G~~l~~i~~~~~a~~~~~~ 335 (469)
-|+++.++.|+...+.|..+
T Consensus 300 YgiLFI~LTF~~fflfE~~~ 319 (430)
T PF06123_consen 300 YGILFIGLTFLAFFLFELLS 319 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 47788888898888888543
No 279
>TIGR00123 cbiM cobalamin biosynthesis protein CbiM. In Methanobacterium thermoautotrophicum, Archaeoglobus fulgidus, and Methanococcus jannaschii, a second homolog of cbiM is also found. These cbiM-related proteins appear to represent a distinct but less well-conserved orthologous group. Still more distant homologs include sll0383 from Synechocystis sp. and HI1621 from Haemophilus influenzae; the latter protein, from a species that does not synthesize cobalamin, is the most divergent member of the group. The functions of and relationships among the set of proteins homologous to cbiM have not been determined.
Probab=41.63 E-value=3e+02 Score=25.70 Aligned_cols=100 Identities=8% Similarity=0.063 Sum_probs=54.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchh--
Q 012167 277 VFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPIT-- 354 (469)
Q Consensus 277 ~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s-- 354 (469)
-.|.+.+.+..++..+++++..+|+. . +....-+..|.+-..++.+..++ |. ..+ .+ .+......+
T Consensus 109 G~N~l~m~~~~~~~~~~~~~~~~~~~-l---~~~v~~f~~gf~~~~l~~~~~~~-~l---~l~--~~--~~~~~~~~~~~ 176 (214)
T TIGR00123 109 GANGFSMGVIGPFVGWIVYKLACRAG-L---RRDVAVFLAAMLGDLATYVVTSV-QL---ALA--FP--IPHAGFTGSVV 176 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-c---chHHHHHHHHHHHHHHHHHHHHH-HH---HHh--CC--CcccchHHHHH
Confidence 45777777777778888888887631 1 11122233333333333332222 11 011 00 000000111
Q ss_pred --HHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcch
Q 012167 355 --FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSM 388 (469)
Q Consensus 355 --~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~ 388 (469)
.....+..+..++.|-++......++.+..|+-.
T Consensus 177 ~~~~~~~~~h~~~~i~Eg~iT~~~~~~l~~~~p~~l 212 (214)
T TIGR00123 177 KFMGIFAYTQVPLAIAEGLLTVMIYDYITKLRPDTL 212 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhh
Confidence 3344466678899999999999999999988753
No 280
>PF14007 YtpI: YtpI-like protein
Probab=39.86 E-value=83 Score=25.01 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHHHHhcCCcccccCC
Q 012167 86 FCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIP 138 (469)
Q Consensus 86 ~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~v~~~i~~ii~~~~~~~~~~~~p 138 (469)
+.+.+|.++.....--... +.=...+.++++.+++++...+.|.|.|++-.|
T Consensus 35 a~ialG~fl~~fgiNQ~~~-~~st~~~iV~~ifl~lG~~n~~~G~r~y~hy~p 86 (89)
T PF14007_consen 35 ANIALGIFLILFGINQMFL-FGSTVRLIVGAIFLVLGLFNLFAGIRAYRHYRP 86 (89)
T ss_pred HHHHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Confidence 4556677665443322222 222478889999999999999999888877544
No 281
>PRK03612 spermidine synthase; Provisional
Probab=38.40 E-value=78 Score=33.91 Aligned_cols=78 Identities=12% Similarity=0.002 Sum_probs=45.3
Q ss_pred HHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCcchhHH-HHHHHH
Q 012167 42 AGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED-NKGWQWGFG-ISTATI 119 (469)
Q Consensus 42 ~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~-~~g~~~~F~-i~~v~~ 119 (469)
..+++.++-.|+.-|-+..+..+..+++ ..+..+..|....+|+++|.++.+++-- .+|-..... ++.+..
T Consensus 115 ~~~~~~~~l~G~~~Pl~~~~~~~~~~~~-------~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~ 187 (521)
T PRK03612 115 VLVLLIGLLIGMEIPLLMRILQRIRDQH-------LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNL 187 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc-------hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 3334455566666666555554322211 2245677899999999999999887654 566554444 444444
Q ss_pred HHHHHHH
Q 012167 120 LLSIPIF 126 (469)
Q Consensus 120 ~i~~ii~ 126 (469)
+++++..
T Consensus 188 ~~a~~~~ 194 (521)
T PRK03612 188 LAALVFL 194 (521)
T ss_pred HHHHHHH
Confidence 4444333
No 282
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.82 E-value=3.9e+02 Score=28.20 Aligned_cols=63 Identities=11% Similarity=0.158 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
+-+.+...-.++|+|-.+.+...-++..+.+.++-+.+..++.+.....+-.+|+.+.-.+..
T Consensus 101 N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~ 163 (461)
T KOG3098|consen 101 NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQ 163 (461)
T ss_pred chHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeE
Confidence 345666777999999999999999999999999999999999999898888888776655544
No 283
>PRK03612 spermidine synthase; Provisional
Probab=36.00 E-value=5.7e+02 Score=27.34 Aligned_cols=25 Identities=8% Similarity=0.012 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167 391 LATSLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 391 ~~~gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
...|-.+....+|+.+|+++.+++-
T Consensus 145 ~~~g~ly~~ntlGa~~G~l~~~~vL 169 (521)
T PRK03612 145 HNVATVLAADYLGALVGGLAFPFLL 169 (521)
T ss_pred hhhhhhHhHHhHHHHHHHHHHHHHH
Confidence 3445555556677777776666654
No 284
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=30.67 E-value=1.5e+02 Score=22.78 Aligned_cols=53 Identities=23% Similarity=0.391 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHHHHhcCCccc
Q 012167 79 AFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYR 134 (469)
Q Consensus 79 ~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~v~~~i~~ii~~~~~~~~~ 134 (469)
.+-.++...+-+++++|. +.||+.++ .+..+.+-+++.++++++.+=-.+.|+
T Consensus 8 ~ae~l~~~il~~~~iisf-i~Gy~~q~--~~~~~~~~~~g~~~~~lv~vP~Wp~y~ 60 (76)
T PF06645_consen 8 LAEKLMQYILIISAIISF-IVGYITQS--FSYTFYIYGAGVVLTLLVVVPPWPFYN 60 (76)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHhheeCCcHhhc
Confidence 345557777778887764 56777774 467777777777777766654444443
No 285
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=30.53 E-value=79 Score=33.59 Aligned_cols=68 Identities=15% Similarity=0.200 Sum_probs=54.0
Q ss_pred cchhHH-HHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhH-hhhcccc
Q 012167 351 LPITFL-WVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLV-SIVNNIT 418 (469)
Q Consensus 351 ~~~s~~-wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~-~~~~~~t 418 (469)
.+.+.+ .++.+|++.++.--..++..++|-++.|.+..-|++|.+.+...++|+---..++ .+++..|
T Consensus 400 v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT 469 (544)
T PF13000_consen 400 VPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFT 469 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhcc
Confidence 344443 3568999999999999999999999999999999999999999998876654433 4444444
No 286
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=26.67 E-value=1.2e+02 Score=31.04 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=20.5
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 012167 429 GSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSS 466 (469)
Q Consensus 429 ~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~~~ 466 (469)
+..+++.|+. |+|+.++....++++|.......++|+
T Consensus 374 ~~~l~~~~~~-F~~vv~~~~~~~~~lf~~i~~~~k~kr 410 (414)
T KOG2662|consen 374 PSSLEEDHYA-FKWVVGITFTLCIVLFVVILGYAKLKR 410 (414)
T ss_pred cchhccCCCh-hhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555533 556666655666666666555444443
No 287
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.10 E-value=1.1e+02 Score=30.58 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=22.6
Q ss_pred HHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhh
Q 012167 379 FFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIV 414 (469)
Q Consensus 379 ~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~ 414 (469)
..+-+=|..|| .|+|+++.+.|++++.+++-.+
T Consensus 205 vLFPLWP~~mR---~gvyY~sig~~gfl~~IlvLaI 237 (372)
T KOG2927|consen 205 VLFPLWPRRMR---QGVYYLSIGAGGFLAFILVLAI 237 (372)
T ss_pred HhcccCcHHHh---cceeeeecchhHHHHHHHHHHH
Confidence 34556788887 6778887777777776555443
No 288
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=25.90 E-value=7.7e+02 Score=25.69 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=24.9
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHHhhh
Q 012167 270 VPPASLPVFPVIFILILAPVYNHVIIPFAR 299 (469)
Q Consensus 270 ip~~~l~~~n~l~iii~~pl~~~l~~p~~~ 299 (469)
+|++.++.+..+..+++.|..++++++.-|
T Consensus 38 l~~siygl~~~~~~~~f~~~vG~~iD~~~R 67 (432)
T PF06963_consen 38 LPVSIYGLVRSLSAILFGPWVGRWIDRSPR 67 (432)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhCCcc
Confidence 567788888899999999999999875543
No 289
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=24.29 E-value=39 Score=33.62 Aligned_cols=81 Identities=12% Similarity=0.123 Sum_probs=55.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcc
Q 012167 308 ITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLS 387 (469)
Q Consensus 308 ~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~ 387 (469)
..-..|+.+-.++.+.+|.+-++.. ..+++..-.+.+-+-.|+|| ++-+++..+
T Consensus 89 fpf~~Ri~~~v~~sa~s~~lVafs~-----------------s~~~sL~GV~~aSissGlGE----iTFL~lss~----- 142 (409)
T KOG3880|consen 89 FPFGFRIALVVLLSALSFFLVAFSN-----------------SVPMSLLGVVFASISSGLGE----ITFLALSSR----- 142 (409)
T ss_pred cccchHHHHHHHHHhcceEEEEecc-----------------chhHHHhhhhhhhhcCCcce----eehhhhhcc-----
Confidence 3445688888888998888766542 23566666777777778888 666666644
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHhhh
Q 012167 388 MRSLATSLSWASLAMGYYFSTVLVSIV 414 (469)
Q Consensus 388 ~~g~~~gl~~l~~~iG~~l~~~l~~~~ 414 (469)
......+-|...++.++++|+.--..+
T Consensus 143 Y~~~~i~~WSSGTGgAGliGa~SYa~l 169 (409)
T KOG3880|consen 143 YPSIVIAGWSSGTGGAGLIGASSYAFL 169 (409)
T ss_pred CCCceeccccCCCCcchhhhhhHHHHH
Confidence 455566778888888888876554444
No 290
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=23.45 E-value=1.7e+02 Score=25.85 Aligned_cols=58 Identities=7% Similarity=0.060 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFV 99 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~ 99 (469)
..+.++.+=++.++|.+.+..+...++.+.-+++ ++++..+++....+.+.++|.++.
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~------~~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEE------TIGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHH------HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888999999999998888877544322 345566666666667777665543
No 291
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=22.91 E-value=8.6e+02 Score=25.17 Aligned_cols=86 Identities=10% Similarity=0.095 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCCc
Q 012167 355 FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNH 434 (469)
Q Consensus 355 ~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n~ 434 (469)
.+-.+...++.+++.....-..+-.+...-|+-.++.+.| .++++.+..++--...... +| .+.
T Consensus 117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqavm~G-----~a~aG~l~Sl~~i~tka~~----------~~-~~~ 180 (406)
T KOG1479|consen 117 FLVTLIIVVLLNLANAVVQGSLYGLAGLFPSEYTQAVMSG-----QALAGTLTSLLRILTKAAF----------SD-SRT 180 (406)
T ss_pred HHHHHHHHHHHhhhhhhhccchhhhhhcCCHHHHHHHHhc-----chhHhHHHHHHHHHHHHhc----------CC-CCc
Confidence 3445567788888888888888888877666666666555 4444444333322221111 12 111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 012167 435 YHLERFYWLMCILGGLNFLHFLF 457 (469)
Q Consensus 435 ~~l~~~f~~la~l~l~~~l~~~~ 457 (469)
+ ...||.+-.++.+++.+.|..
T Consensus 181 s-A~~yF~~s~~~~llC~i~y~~ 202 (406)
T KOG1479|consen 181 S-ALIYFITSTVILLLCFVLYLV 202 (406)
T ss_pred e-eehhHHHHHHHHHHHHHHHHH
Confidence 2 134677777777778888873
No 292
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=22.72 E-value=1.2e+02 Score=29.74 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHH
Q 012167 37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIST 116 (469)
Q Consensus 37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~~ 116 (469)
+..-++|..++-...|.+.|.+.-|=.+..|++ .|+...+||..-.|+=.-++...---=....+-+..|.+|.
T Consensus 344 ~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEe------arstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS 417 (454)
T KOG4332|consen 344 PSESLIGFCLFEACVGLFWPSIMKMRSQYIPEE------ARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICS 417 (454)
T ss_pred chHHHHHHHHHHHHHhhcchHHHHHHHhhCCHH------HHhhhhhheechhhHhhhhhheecccccCccccchhhhhhH
Confidence 344477888889999999999988776555543 36788999887777533322110000011234568899999
Q ss_pred HHHHHHHHH
Q 012167 117 ATILLSIPI 125 (469)
Q Consensus 117 v~~~i~~ii 125 (469)
+.+.++.+.
T Consensus 418 ~~~~~a~i~ 426 (454)
T KOG4332|consen 418 AFLFVASIL 426 (454)
T ss_pred HHHHHHHHH
Confidence 988877553
No 293
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=22.71 E-value=2.3e+02 Score=24.37 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=28.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHH
Q 012167 276 PVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMA 326 (469)
Q Consensus 276 ~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~ 326 (469)
..+|-++.++...+..|+|.-..- +. .+...|+.+|++++.+..+
T Consensus 81 ~v~Nilvsv~~~~~~~~~~~~~~~---~~---~~~~~Rvllgl~~al~vlv 125 (142)
T PF11712_consen 81 TVFNILVSVFAVFFAGWYWAGYSF---GG---WSFPYRVLLGLFGALLVLV 125 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---cc---cchHHHHHHHHHHHHHHHH
Confidence 456667777777677765543221 11 6778888888876665443
No 294
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=20.65 E-value=1.2e+02 Score=23.91 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012167 437 LERFYWLMCILGGLNFLHFLFWAARYKY 464 (469)
Q Consensus 437 l~~~f~~la~l~l~~~l~~~~~~~~~~~ 464 (469)
++.-|++.+.+-++..+.|+.+.++-++
T Consensus 33 Lgm~~lvI~~iFil~VilwfvCC~kRkr 60 (94)
T PF05393_consen 33 LGMWFLVICGIFILLVILWFVCCKKRKR 60 (94)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3433555555545555555555554433
No 295
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=20.22 E-value=4.4e+02 Score=21.42 Aligned_cols=34 Identities=15% Similarity=0.402 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccCC----cchhHHHHHHH
Q 012167 85 VFCLSCGALIAVTFVVWIEDNKG----WQWGFGISTAT 118 (469)
Q Consensus 85 Y~~iNiGa~i~~~~~~~l~~~~g----~~~~F~i~~v~ 118 (469)
=|.+-+..++|..++-||-++++ |.+.|++.+++
T Consensus 49 G~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~ 86 (100)
T TIGR02230 49 GWSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVV 86 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 33344445555666667777665 44444444433
Done!