Query 012167
Match_columns 469
No_of_seqs 195 out of 1489
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 04:05:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012167.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012167hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 99.9 6.1E-23 2.1E-27 215.7 10.4 388 36-466 108-510 (524)
2 4aps_A DI-OR tripeptide H+ sym 99.8 1.8E-19 6.3E-24 187.4 25.0 354 36-465 107-478 (491)
3 1pw4_A Glycerol-3-phosphate tr 99.5 2.5E-13 8.5E-18 138.8 19.0 315 36-461 118-436 (451)
4 3o7q_A L-fucose-proton symport 99.3 1.9E-10 6.5E-15 116.9 21.1 262 36-417 116-407 (438)
5 2gfp_A EMRD, multidrug resista 99.1 7.3E-11 2.5E-15 117.8 7.8 83 36-124 87-169 (375)
6 4gc0_A D-xylose-proton symport 98.8 8.6E-08 2.9E-12 98.9 16.8 79 35-119 124-210 (491)
7 2cfq_A Lactose permease; trans 98.8 3.4E-09 1.2E-13 107.8 4.5 138 275-461 264-402 (417)
8 1pw4_A Glycerol-3-phosphate tr 98.4 3.4E-06 1.2E-10 85.5 15.8 144 273-460 65-208 (451)
9 3o7q_A L-fucose-proton symport 98.4 5.7E-06 1.9E-10 83.6 15.9 114 273-415 64-177 (438)
10 4aps_A DI-OR tripeptide H+ sym 98.2 1.7E-05 5.7E-10 81.7 15.5 142 273-463 57-201 (491)
11 2xut_A Proton/peptide symporte 98.0 2.7E-05 9.3E-10 80.8 12.8 142 274-462 58-202 (524)
12 2gfp_A EMRD, multidrug resista 98.0 1.3E-05 4.4E-10 79.4 9.1 112 273-416 38-149 (375)
13 4gc0_A D-xylose-proton symport 97.3 0.0033 1.1E-07 64.2 14.6 123 280-416 65-187 (491)
14 2cfq_A Lactose permease; trans 95.6 0.0051 1.8E-07 61.8 3.1 86 37-128 312-398 (417)
15 2ks1_B Epidermal growth factor 26.9 63 0.0022 21.1 3.2 20 447-466 24-43 (44)
16 2l2t_A Receptor tyrosine-prote 23.2 82 0.0028 20.5 3.3 19 449-467 25-43 (44)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.88 E-value=6.1e-23 Score=215.71 Aligned_cols=388 Identities=19% Similarity=0.290 Sum_probs=233.9
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
+.+.+++++++.++|.|...|+..++++|++++++ |.++.+.|++++.+.++|.+++|.+++++.+..||++.|.+.
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 184 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP 184 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 47788999999999999999999999999998753 234567899999999999999999999999989999999999
Q ss_pred HHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCC-Cc-cccccc----cCCCCCCCCcc-cccccc
Q 012167 116 TATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNS-SN-AVTEVH----SSPTCSNESRD-EGNSNV 188 (469)
Q Consensus 116 ~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~-~~-~~~~~~----~~~~~~~~~~~-d~a~~~ 188 (469)
++..+++.+.++..++.+++++|++++..+..+.+..+++++....+. .. ....+. ....+...... ..+..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 263 (524)
T 2xut_A 185 GVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCC- 263 (524)
T ss_dssp HHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHH-
T ss_pred HHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhh-
Confidence 988888777766655544433333332222222221111111000000 00 000000 00000000000 00000
Q ss_pred CCCCCCCCCchhHHHHhhhccCCCCCCc-------cccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHc
Q 012167 189 KEKVPSQKPTEDIKFLNRALRNNPAYPI-------VQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATM 261 (469)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~ 261 (469)
..+....+ ....+| +.++..+.+++|+.++.++++.....++..+.|..+.+..+..++
T Consensus 264 ------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (524)
T 2xut_A 264 ------------AMVLVMGF--VGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM 329 (524)
T ss_dssp ------------HHHHHHHH--HHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHS
T ss_pred ------------hhhhhhcc--cccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhc
Confidence 00000000 000111 011122234566677777888888888888998887777776666
Q ss_pred ccCCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012167 262 NTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVN 341 (469)
Q Consensus 262 d~~~~g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~ 341 (469)
+.+. + .+.+.+..++++..++..|+.+++..|..+|+..+ +++.+++.+|+++.+++++.+++.+..+ .
T Consensus 330 ~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~ 398 (524)
T 2xut_A 330 VKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLMM-----D 398 (524)
T ss_dssp CCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTTT-----T
T ss_pred CCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHh-----c
Confidence 5442 1 35667778888888999999998877776664222 5677888899999988887766543110 0
Q ss_pred cCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccC
Q 012167 342 SGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTY 421 (469)
Q Consensus 342 ~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~ 421 (469)
+ ....+.+|+++.+++.++++.+..|..++++.+.+|+++||.++|++++..++|+.+++.+.+.+.+.++
T Consensus 399 ~-------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~-- 469 (524)
T 2xut_A 399 G-------GSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV-- 469 (524)
T ss_dssp T-------TCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH--
T ss_pred C-------CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc--
Confidence 0 1235778899999999999999999999999999999999999999999999999999999988764221
Q ss_pred CCCCCCcCC-CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 012167 422 RHTPWLFGS-NLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSS 466 (469)
Q Consensus 422 ~~~~w~~~~-~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~~~ 466 (469)
.+|. ++ +.+.. .+.|++.++++++++++++++.+++++++
T Consensus 470 --~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (524)
T 2xut_A 470 --TEQI-VQTGMSVT--AFQMFFFAGFAILAAIVFALYARSYQMQD 510 (524)
T ss_dssp --HHHH-HHHHSCHH--HHHHHHHHHHHHHHHHHHC----------
T ss_pred --cccc-cccccccc--ccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 1232 11 11211 22377888888888888888777776544
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.84 E-value=1.8e-19 Score=187.40 Aligned_cols=354 Identities=16% Similarity=0.251 Sum_probs=232.1
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
+.+.+++++++.++|.|...|+..++++|++++++. +|..++++++.+.++|..++|.+++++.++.||++.|.+.
T Consensus 107 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~----~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~ 182 (491)
T 4aps_A 107 GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLA 182 (491)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc----cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 367788999999999999999999999999997632 4677899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcccccC--CCCCCch--hHHHHHHH-------------HHHhhccCCCCCccccccccCCCCCC
Q 012167 116 TATILLSIPIFLLGSPFYRNKI--PTGSPLT--TIFKVLTA-------------AIFNTCKSKNSSNAVTEVHSSPTCSN 178 (469)
Q Consensus 116 ~v~~~i~~ii~~~~~~~~~~~~--p~~~~l~--~~~~v~~~-------------a~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (469)
++..+++++++++.++++.+++ +..++.. +..+.... ..... .
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~--~------------------ 242 (491)
T 4aps_A 183 AIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLV--G------------------ 242 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHH--S------------------
T ss_pred HHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhc--c------------------
Confidence 8888877776554433322211 1111111 11110000 00000 0
Q ss_pred CCccccccccCCCCCCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHH
Q 012167 179 ESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQA 258 (469)
Q Consensus 179 ~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa 258 (469)
..+++.......... ......+... .++.. .....++++..+.+++++...+++..+.+..+.+..+.
T Consensus 243 ~~~~~~~~~~~~~~~---~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (491)
T 4aps_A 243 WNSLPAYINLLTIVA---IAIPVFYFAW--------MISSV-KVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFA 310 (491)
T ss_dssp SCCTTHHHHHHHHHH---HHHHHHHHHH--------HC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHH
T ss_pred CcccccchhhhhHHH---HHHHHHHHHH--------Hhhcc-cccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 000000000000000 0000000000 00000 00113456666777888888899999988887766654
Q ss_pred HH-cccCCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012167 259 AT-MNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKR 337 (469)
Q Consensus 259 ~~-~d~~~~g~~ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~ 337 (469)
.+ .+.+. .+.+.+..++++..++..++.+++.+++.||. +...+++.+|+++.+++++.+++.....
T Consensus 311 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 378 (491)
T 4aps_A 311 AERVDSSW----FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ------PSSPTKFAVGLMFAGLSFLLMAIPGALY-- 378 (491)
T ss_dssp HHSCCCSS----SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHHHHHHHHHHTTTHHHHHHC--
T ss_pred HHHhccCc----cCHHHHhccchHHHHHHHHHHHHHHHHHhccC------CCchHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 43 33321 46788899999999999999999877665542 5667889999999999998877764211
Q ss_pred hhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccc
Q 012167 338 VAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNI 417 (469)
Q Consensus 338 ~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~ 417 (469)
+ .....+.+|+++.+++.++++.+..|..++++.+..|++.||.++|+++....+|+.+++.+.+.+.+.
T Consensus 379 -----~-----~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~ 448 (491)
T 4aps_A 379 -----G-----TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK 448 (491)
T ss_dssp -----C-----CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred -----C-----CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0 012357789999999999999999999999999999999999999999999999999999998877541
Q ss_pred cccCCCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 012167 418 TSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYS 465 (469)
Q Consensus 418 t~~~~~~~w~~~~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~~~ 465 (469)
. ....|+.+++++++..++.+++.++.+++
T Consensus 449 ~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 449 S------------------EVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp S------------------TTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred c------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 23467778888888888777776666544
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.53 E-value=2.5e-13 Score=138.84 Aligned_cols=315 Identities=8% Similarity=-0.036 Sum_probs=181.3
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCC-cchhHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQWGFGI 114 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g-~~~~F~i 114 (469)
+.+.+++++++.++|.|...|...+++.|.++++ +|.++++++..+.++|.++++.+++++.+..| |++.|.+
T Consensus 118 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~ 191 (451)
T 1pw4_A 118 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM 191 (451)
T ss_dssp SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCch------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3567888999999999999999999999999864 47789999999999999999999999888888 9999999
Q ss_pred HHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccccccCCCCCCCCccccccccCCCCCC
Q 012167 115 STATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPS 194 (469)
Q Consensus 115 ~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~ 194 (469)
.++..++..++.++..+ ++|+..... ..+.. .. .. .... +...
T Consensus 192 ~~~~~~~~~~~~~~~~~----~~~~~~~~~---------------~~~~~----------~~----~~-~~~~--~~~~- 234 (451)
T 1pw4_A 192 PAFCAILVALFAFAMMR----DTPQSCGLP---------------PIEEY----------KN----DY-PDDY--NEKA- 234 (451)
T ss_dssp HHHHHHHHHHHHHHHCC----CSSTTTCCC---------------SCTTT----------CC----C-------------
T ss_pred HHHHHHHHHHHHHhhcc----CCHhhcCCC---------------Chhhh----------cc----cc-cccc--hhhh-
Confidence 88877665554433221 111110000 00000 00 00 0000 0000
Q ss_pred CCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHHHHHHHHHhhHHHHHhhhcchhHHHHHHHHcccCCCCcc-cCCC
Q 012167 195 QKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLK-VPPA 273 (469)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~i~f~~~~~Q~~s~~~~qa~~~d~~~~g~~-ip~~ 273 (469)
++ ...+ ++....+..+-..+..+.+...+.+..+....+.++. .+....+ .. ...+
T Consensus 235 ---------------~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-~~~~~~~ 291 (451)
T 1pw4_A 235 ---------------EQ-ELTA---KQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPT---YLKEVKH-FALDKSS 291 (451)
T ss_dssp --------------------CC---THHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH---HBTTBSC-CCHHHHH
T ss_pred ---------------hc-cccc---ccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcC-CCHHHHH
Confidence 00 0000 0000000000011222222223333332222222222 2222212 10 0123
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 274 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSI-VAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 274 ~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~-i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
.+.+...+..++..++..++.+++.+ ...+.+.++.++.+ ++++...+. ..
T Consensus 292 ~~~~~~~~~~~~~~~~~g~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~ 343 (451)
T 1pw4_A 292 WAYFLYEYAGIPGTLLCGWMSDKVFR---------GNRGATGVFFMTLVTIATIVYWMN-------------------PA 343 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTST---------TCHHHHHHHHHHHHHHHHHHTTSC-------------------CT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---------CCchhHHHHHHHHHHHHHHHHHHh-------------------cc
Confidence 34455555555666666665443210 11223444444433 444332221 01
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHH-HHHHHHHhHhhhccccccCCCCCCCcCCC
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAM-GYYFSTVLVSIVNNITSTYRHTPWLFGSN 431 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~i-G~~l~~~l~~~~~~~t~~~~~~~w~~~~~ 431 (469)
.+.++.+...++.+++.....+....++.+..|++.||.++|++.....+ |..+++.+.+.+.+.. +
T Consensus 344 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~------g------ 411 (451)
T 1pw4_A 344 GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF------G------ 411 (451)
T ss_dssp TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS------C------
T ss_pred cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------C------
Confidence 24566777778888888888888899999999999999999999999999 9999999988876522 1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012167 432 LNHYHLERFYWLMCILGGLNFLHFLFWAAR 461 (469)
Q Consensus 432 ~n~~~l~~~f~~la~l~l~~~l~~~~~~~~ 461 (469)
+...|++.++++++..++++...++
T Consensus 412 -----~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 412 -----WDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2456777777777777766665443
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.29 E-value=1.9e-10 Score=116.95 Aligned_cols=262 Identities=14% Similarity=0.117 Sum_probs=154.9
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhc-ccCC-------
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE-DNKG------- 107 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~-~~~g------- 107 (469)
+.+.+++++++.++|.|...|...++++|.++++ +|..+++++..+.++|.++++.+++++. +..+
T Consensus 116 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~ 189 (438)
T 3o7q_A 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVL 189 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST------THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHH
T ss_pred cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 4788999999999999999999999999999875 3667899999999999999999999988 6555
Q ss_pred ------------------cchhHHHHHHHHHHHHHHHHhcCCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCccccc
Q 012167 108 ------------------WQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTE 169 (469)
Q Consensus 108 ------------------~~~~F~i~~v~~~i~~ii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~ 169 (469)
|++.|.+.++..++..++++..+ .|+..+ +. . .
T Consensus 190 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~------~p~~~~-------------~~--~--~------ 240 (438)
T 3o7q_A 190 DKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTK------FPALQS-------------DN--H--S------ 240 (438)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCCCTT-------------TC--C--C------
T ss_pred ccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHc------CCcccc-------------cc--c--c------
Confidence 89999877766655554443321 121100 00 0 0
Q ss_pred cccCCCCCCCCccccccccCCCCCCCCCchhHHHHhhhccCCCCCCccccCchhhHHHHHHH---HHHHHHHhhHHHHHh
Q 012167 170 VHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVV---KIFPIFMSTIMLNCC 246 (469)
Q Consensus 170 ~~~~~~~~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~---~~l~l~~~~i~f~~~ 246 (469)
+ .++ . +..++.++++ ++....+...++...
T Consensus 241 -------------~-------~~~-------------------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (438)
T 3o7q_A 241 -------------D-------AKQ-------------------G--------SFSASLSRLARIRHWRWAVLAQFCYVGA 273 (438)
T ss_dssp -------------C-------SST-------------------T--------SHHHHHHHHTTCSHHHHHHHHHHHHHHH
T ss_pred -------------c-------ccc-------------------c--------chhhhHHHHHhChHHHHHHHHHHHHHHH
Confidence 0 000 0 0001111111 111122222222222
Q ss_pred hhcchhHHHHHHHHcccCCCCcc-cCCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHH
Q 012167 247 LAQLSTFSVQQAATMNTKLGSLK-VPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAM 325 (469)
Q Consensus 247 ~~Q~~s~~~~qa~~~d~~~~g~~-ip~~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~ 325 (469)
+....+..+... ++...+ .. ...+.+..+..+..++..++..++.+++ ...+-+.++.++.++++
T Consensus 274 ~~~~~~~~~~~~--~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-----------~~~~~~~~~~~~~~~~~ 339 (438)
T 3o7q_A 274 QTACWSYLIRYA--VEEIPG-MTAGFAANYLTGTMVCFFIGRFTGTWLISRF-----------APHKVLAAYALIAMALC 339 (438)
T ss_dssp HHHHHHHHHHHH--HHHSTT-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--hhccCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------cchHHHHHHHHHHHHHH
Confidence 222212222220 111111 10 1123344444555555555555554332 22234556666666665
Q ss_pred HHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHH
Q 012167 326 AVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYY 405 (469)
Q Consensus 326 ~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~ 405 (469)
+...+. + +. |.+...++.+++.....|..+++..+..|++ ++..+++.. ...+|..
T Consensus 340 ~~~~~~--------------------~-~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~ 395 (438)
T 3o7q_A 340 LISAFA--------------------G-GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGG 395 (438)
T ss_dssp HHHHHC--------------------C-HH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHH
T ss_pred HHHHHc--------------------C-Cc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHH
Confidence 554432 1 12 3344557888888888999999999999988 888888777 5669999
Q ss_pred HHHHhHhhhccc
Q 012167 406 FSTVLVSIVNNI 417 (469)
Q Consensus 406 l~~~l~~~~~~~ 417 (469)
+++.+.+.+.+.
T Consensus 396 ~~~~~~g~l~~~ 407 (438)
T 3o7q_A 396 IVTPVMGFVSDA 407 (438)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998887653
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.12 E-value=7.3e-11 Score=117.82 Aligned_cols=83 Identities=12% Similarity=0.025 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 36 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 36 ~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
+.+.++++..+.++|.+...|...+++.|.++++ +|.++++++..+.++|..+++.+++++.++.||+..|.+.
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 160 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT------QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL 160 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence 4677888899999999999999999999999765 3667899999999999999999999999989999999987
Q ss_pred HHHHHHHHH
Q 012167 116 TATILLSIP 124 (469)
Q Consensus 116 ~v~~~i~~i 124 (469)
++..++..+
T Consensus 161 ~~~~~~~~~ 169 (375)
T 2gfp_A 161 LVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 777655444
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.80 E-value=8.6e-08 Score=98.89 Aligned_cols=79 Identities=19% Similarity=0.234 Sum_probs=62.5
Q ss_pred chhHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhccc--------C
Q 012167 35 GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN--------K 106 (469)
Q Consensus 35 ~~~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiGa~i~~~~~~~l~~~--------~ 106 (469)
.+.+.+++++++.++|.|+..|....+++|..+++ +|....+++..+..+|.+++..++..+... .
T Consensus 124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~------~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 197 (491)
T 4gc0_A 124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAH------IRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTD 197 (491)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGG------GHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH------hhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccch
Confidence 46888999999999999999999999999998865 467788889999999999998887766543 2
Q ss_pred CcchhHHHHHHHH
Q 012167 107 GWQWGFGISTATI 119 (469)
Q Consensus 107 g~~~~F~i~~v~~ 119 (469)
.|+..+.+..+..
T Consensus 198 ~~~~~~~~~~~~~ 210 (491)
T 4gc0_A 198 GWRYMFASECIPA 210 (491)
T ss_dssp HHHHHHHTTHHHH
T ss_pred hhHHHhhhhhhhh
Confidence 3555555544443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.76 E-value=3.4e-09 Score=107.84 Aligned_cols=138 Identities=10% Similarity=0.032 Sum_probs=89.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchh
Q 012167 275 LPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPIT 354 (469)
Q Consensus 275 l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s 354 (469)
+.+++.+..++..++..++.+++.+| +.+.+|.++.+++++..++. .+
T Consensus 264 ~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~l~~~~~~~~~~~~~~~~~---------------------~~ 311 (417)
T 2cfq_A 264 VTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSVRIIGSSFA---------------------TS 311 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHH-----------HHHHHHHHHHHHHHHHHTTC---------------------CS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcHH-----------HHHHHHHHHHHHHHHHHHHh---------------------cc
Confidence 34455555555556666665443322 23556666666655443221 13
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHH-HHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCCC
Q 012167 355 FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSL-SWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN 433 (469)
Q Consensus 355 ~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl-~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~n 433 (469)
.++++...++.+++.....+....++.+..|++.||+.+|+ +....++|+.+++.+.+.+.+..
T Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~--------------- 376 (417)
T 2cfq_A 312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI--------------- 376 (417)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc---------------
Confidence 44555555667777666667778899999999999999998 57778899999999988765311
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012167 434 HYHLERFYWLMCILGGLNFLHFLFWAAR 461 (469)
Q Consensus 434 ~~~l~~~f~~la~l~l~~~l~~~~~~~~ 461 (469)
.+...|.+.++++++..++++...++
T Consensus 377 --g~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 377 --GFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred --CcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 13456777788888777766655543
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.43 E-value=3.4e-06 Score=85.47 Aligned_cols=144 Identities=11% Similarity=-0.043 Sum_probs=103.5
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.++..+...+..|+.+++.+++.|| +-+.+|.++.+++.+..++.... .
T Consensus 65 g~~~~~~~~~~~~~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~~-----------------~ 116 (451)
T 1pw4_A 65 GFALSGISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILAAAVMLFMGFVPWA-----------------T 116 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHCHHH-----------------H
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcCch-----------HHHHHHHHHHHHHHHHHHhhhhc-----------------c
Confidence 3445556666667777777776544332 34678888888888887762100 0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCCCC
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 432 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~~~ 432 (469)
.+.++++...++.+++.....+....++.+..|++.|+.++|++....++|..+++.+++.+....+ +|
T Consensus 117 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-----~w------ 185 (451)
T 1pw4_A 117 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN-----DW------ 185 (451)
T ss_dssp SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC-----CS------
T ss_pred ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cH------
Confidence 2456788889999999999999999999999999999999999999999999999999877543210 14
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012167 433 NHYHLERFYWLMCILGGLNFLHFLFWAA 460 (469)
Q Consensus 433 n~~~l~~~f~~la~l~l~~~l~~~~~~~ 460 (469)
...|++.++++++..++.++..+
T Consensus 186 -----~~~f~~~~~~~~~~~~~~~~~~~ 208 (451)
T 1pw4_A 186 -----HAALYMPAFCAILVALFAFAMMR 208 (451)
T ss_dssp -----TTCTHHHHHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHHHHHHHHhhcc
Confidence 22456667777666655544444
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.38 E-value=5.7e-06 Score=83.60 Aligned_cols=114 Identities=12% Similarity=0.034 Sum_probs=91.5
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.+...+..++..|+.+++.+++.|| +-+.+|.++.+++.+..+.... .
T Consensus 64 g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~------------------~ 114 (438)
T 3o7q_A 64 GLIQSAFYFGYFIIPIPAGILMKKLSYK-----------AGIITGLFLYALGAALFWPAAE------------------I 114 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHHHH------------------T
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHhccc------------------c
Confidence 4455666666677788888776655443 3477888888888877643310 1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhc
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 415 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~ 415 (469)
.+.++++...++.|++.....+....++.+..|++.|+.++|++....++|..+++.+++.+.
T Consensus 115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788899999999999999999999999999999999999999999999999999988875
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.22 E-value=1.7e-05 Score=81.67 Aligned_cols=142 Identities=13% Similarity=0.070 Sum_probs=106.5
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHH-hhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIP-FARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL 351 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p-~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~ 351 (469)
+++.+...+...+..|+.+++.++ +.|| +-+.+|.++.+++.+.+++.
T Consensus 57 ~~~~~~~~~~~~~~~~~~g~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~~-------------------- 105 (491)
T 4aps_A 57 ASIMAIYASMVYLSGTIGGFVADRIIGAR-----------PAVFWGGVLIMLGHIVLALP-------------------- 105 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCHH-----------HHHHHHHHHHHHHHHHHHSC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccch-----------HHHHHHHHHHHHHHHHHHHh--------------------
Confidence 456667777777888888888776 4443 23667777777777665432
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcch--hhHHHHHHHHHHHHHHHHHHHhHhhhccccccCCCCCCCcC
Q 012167 352 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSM--RSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFG 429 (469)
Q Consensus 352 ~~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~--~g~~~gl~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~ 429 (469)
.+.++++...++.++++....|....++.+..|++. |+..++++....++|..+++.+++.+.+.. +|
T Consensus 106 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------g~--- 175 (491)
T 4aps_A 106 -FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA------GY--- 175 (491)
T ss_dssp -CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------CH---
T ss_pred -hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh------hH---
Confidence 245677888999999999999999999999999988 888889899999999999999998876421 24
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012167 430 SNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK 463 (469)
Q Consensus 430 ~~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~~ 463 (469)
...|++.+++.++..+++++..+++.
T Consensus 176 --------~~~f~~~~~~~~~~~~~~~~~~~~~~ 201 (491)
T 4aps_A 176 --------HVAFSLAAIGMFIGLLVYYFGGKKTL 201 (491)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred --------HHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 44566677777777766666655543
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.04 E-value=2.7e-05 Score=80.84 Aligned_cols=142 Identities=13% Similarity=0.044 Sum_probs=98.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 012167 274 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI 353 (469)
Q Consensus 274 ~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ 353 (469)
++.+...+..++..++.+++.+++ ....+-+.+|.++.+++.+..++. +.
T Consensus 58 ~~~~~~~~~~~~~~~~~G~l~dr~----------~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~ 107 (524)
T 2xut_A 58 DVFHSFVIGVYFFPLLGGWIADRF----------FGKYNTILWLSLIYCVGHAFLAIF--------------------EH 107 (524)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHTTS----------SCSHHHHHHHHHHHHHHHHHHHHT--------------------SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------hcchHHHHHHHHHHHHHHHHHHHh--------------------cc
Confidence 344455555556666666665433 022234667777777777766543 12
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHH---HHHHHHHHHHHHHHhHhhhccccccCCCCCCCcCC
Q 012167 354 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSL---SWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGS 430 (469)
Q Consensus 354 s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl---~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~w~~~~ 430 (469)
+.++++...++.++++.+..|...+++.+..|++.|+..+++ +....++|..+++.+++.+.+.. +|
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g~---- 177 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF------GA---- 177 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS------CH----
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cH----
Confidence 567788889999999999999999999999999999877666 88888999999998887765311 23
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012167 431 NLNHYHLERFYWLMCILGGLNFLHFLFWAARY 462 (469)
Q Consensus 431 ~~n~~~l~~~f~~la~l~l~~~l~~~~~~~~~ 462 (469)
...|++.+++.++..+++++..+++
T Consensus 178 -------~~~f~~~~~~~~~~~~~~~~~~~~~ 202 (524)
T 2xut_A 178 -------AVAFGIPGVLMFVATVFFWLGRKRY 202 (524)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4456667777666666555443333
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.01 E-value=1.3e-05 Score=79.43 Aligned_cols=112 Identities=11% Similarity=-0.006 Sum_probs=88.1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 012167 273 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 352 (469)
Q Consensus 273 ~~l~~~n~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 352 (469)
+++.++..+...+..|+.+++.+++.|| +-+.+|.++.+++.+..++.
T Consensus 38 g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------------- 85 (375)
T 2gfp_A 38 QSVMGAYLLTYGVSQLFYGPISDRVGRR-----------PVILVGMSIFMLATLVAVTT--------------------- 85 (375)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHTTSCCC-----------CCCHHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCc-----------hhHHHHHHHHHHHHHHHHHh---------------------
Confidence 3455666666677777777776544332 12347777777777776654
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 353 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 353 ~s~~wli~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
.+.++++...++.+++.....+....++.+..|++.|+..+|++....++|..+++.+++.+.+
T Consensus 86 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 149 (375)
T 2gfp_A 86 SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT 149 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 2567788889999999999999999999999999999999999999999999999999887653
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.27 E-value=0.0033 Score=64.17 Aligned_cols=123 Identities=11% Similarity=0.042 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHH
Q 012167 280 VIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVA 359 (469)
Q Consensus 280 ~l~iii~~pl~~~l~~p~~~r~~~~~~~~s~~~ri~~G~~l~~i~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~s~~wli 359 (469)
.+-.++..++.+++-+++.|| +-+.++.++..++-+.+++........... . .-......+++.++
T Consensus 65 ~~G~~iG~~~~G~laDr~GRk-----------~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~-~--~~~~~~a~~~~~l~ 130 (491)
T 4gc0_A 65 LIGCIIGGALGGYCSNRFGRR-----------DSLKIAAVLFFISGVGSAWPELGFTSINPD-N--TVPVYLAGYVPEFV 130 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTCHH-----------HHHHHHHHHHHHHHHHHHCTTTTTSCSSSS-S--SCCGGGGGCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCH-----------HHHHHHHHHHHHHHHHHHHHhhhhhhhcch-h--HHHHHHhhhHHHHH
Confidence 344455556666666655554 235677777777766666432100000000 0 00000124677889
Q ss_pred HHHHHHHHHHHHhhhhhHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 012167 360 LQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 416 (469)
Q Consensus 360 ~~~~l~~igE~~i~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~ 416 (469)
...++.|+|+-...+....++.+.+|++.|+..++++.....+|..++..++.....
T Consensus 131 ~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~ 187 (491)
T 4gc0_A 131 IYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIAR 187 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence 999999999999999999999999999999999999999999999998887766553
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=95.63 E-value=0.0051 Score=61.82 Aligned_cols=86 Identities=9% Similarity=0.013 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHhhcccccccccchhcccCCCCChhhhhhHhHHHHH-HHHHHHHHHHHHHHHHHhhcccCCcchhHHHH
Q 012167 37 AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNY-YVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 115 (469)
Q Consensus 37 ~~~~~~~l~li~~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~-~Y~~iNiGa~i~~~~~~~l~~~~g~~~~F~i~ 115 (469)
.+.+.+...+.+++.+.+.+...++..|.++++ .|..++.+ +..+.++|+.++|.++|++.++.||...|.+.
T Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~ 385 (417)
T 2cfq_A 312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL 385 (417)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHH
Confidence 344445555566666666676777888888753 35566777 46677899999999999999988999999988
Q ss_pred HHHHHHHHHHHHh
Q 012167 116 TATILLSIPIFLL 128 (469)
Q Consensus 116 ~v~~~i~~ii~~~ 128 (469)
++..+++.++.+.
T Consensus 386 ~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 386 GLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 8888777766544
No 15
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=26.85 E-value=63 Score=21.08 Aligned_cols=20 Identities=20% Similarity=-0.064 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhhcccccc
Q 012167 447 LGGLNFLHFLFWAARYKYSS 466 (469)
Q Consensus 447 l~l~~~l~~~~~~~~~~~~~ 466 (469)
+.++.+++++++.||-+.+|
T Consensus 24 ~~ii~~~~~~~~RRr~~~~k 43 (44)
T 2ks1_B 24 LLVVALGIGLFMRRRHIVRK 43 (44)
T ss_dssp HHHHHHHHHHHHHTTTCCSC
T ss_pred HHHHHHHHHHHhhhhHhhcc
Confidence 33444455555555544444
No 16
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=23.23 E-value=82 Score=20.54 Aligned_cols=19 Identities=0% Similarity=-0.073 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhhccccccC
Q 012167 449 GLNFLHFLFWAARYKYSST 467 (469)
Q Consensus 449 l~~~l~~~~~~~~~~~~~~ 467 (469)
++.+..++++.||-+.+||
T Consensus 25 ii~~~~~~~~RRRr~~~kr 43 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSIKKKR 43 (44)
T ss_dssp HHHHHHHHHHHTTCSSCCC
T ss_pred HHHHHHHHHhhhhhhhhcc
Confidence 3444445555555444443
Done!