Query 012169
Match_columns 469
No_of_seqs 238 out of 1177
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 23:46:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1605 TFIIF-interacting CTD 100.0 1.1E-48 2.4E-53 385.8 13.5 180 280-459 81-262 (262)
2 TIGR02251 HIF-SF_euk Dullard-l 100.0 2E-40 4.4E-45 305.5 17.1 161 288-448 1-162 (162)
3 PF03031 NIF: NLI interacting 100.0 1.8E-38 3.9E-43 287.6 15.9 158 289-450 1-159 (159)
4 TIGR02245 HAD_IIID1 HAD-superf 100.0 1.4E-36 3E-41 289.2 14.9 158 285-458 18-193 (195)
5 TIGR02250 FCP1_euk FCP1-like p 100.0 3.9E-31 8.4E-36 243.4 13.4 138 285-425 3-154 (156)
6 KOG2832 TFIIF-interacting CTD 100.0 1.7E-31 3.8E-36 270.5 11.3 159 283-457 184-344 (393)
7 COG5190 FCP1 TFIIF-interacting 100.0 5.9E-29 1.3E-33 256.9 8.7 179 280-459 204-384 (390)
8 smart00577 CPDc catalytic doma 99.9 2.8E-26 6.1E-31 207.7 14.7 145 287-431 1-148 (148)
9 KOG0323 TFIIF-interacting CTD 99.8 6.4E-20 1.4E-24 199.2 9.7 136 287-425 145-297 (635)
10 TIGR01685 MDP-1 magnesium-depe 98.5 4.1E-07 8.9E-12 85.8 8.2 138 289-426 3-158 (174)
11 TIGR01681 HAD-SF-IIIC HAD-supe 98.4 2.2E-07 4.8E-12 82.6 3.6 111 289-411 1-121 (128)
12 COG5190 FCP1 TFIIF-interacting 98.3 5.1E-07 1.1E-11 94.6 3.6 137 285-423 23-172 (390)
13 PRK13288 pyrophosphatase PpaX; 98.2 7.5E-07 1.6E-11 84.2 2.2 96 327-423 81-180 (214)
14 PRK14988 GMP/IMP nucleotidase; 98.2 7.2E-07 1.6E-11 86.1 1.7 93 327-420 92-188 (224)
15 cd01427 HAD_like Haloacid deha 98.1 1.5E-06 3.3E-11 73.1 3.4 107 290-412 1-127 (139)
16 TIGR01662 HAD-SF-IIIA HAD-supe 98.1 2.7E-06 5.9E-11 74.6 4.6 114 289-420 1-126 (132)
17 COG4996 Predicted phosphatase 98.1 1.2E-05 2.5E-10 73.4 8.4 136 290-428 2-149 (164)
18 PRK13225 phosphoglycolate phos 98.0 1.6E-06 3.4E-11 86.9 1.5 95 327-422 141-236 (273)
19 TIGR01684 viral_ppase viral ph 98.0 2.1E-05 4.5E-10 80.1 7.7 124 285-431 123-282 (301)
20 PHA03398 viral phosphatase sup 97.9 4E-05 8.7E-10 78.1 9.4 125 285-432 125-285 (303)
21 TIGR00338 serB phosphoserine p 97.9 2.9E-06 6.3E-11 80.2 1.1 94 327-421 84-191 (219)
22 TIGR00213 GmhB_yaeD D,D-heptos 97.9 1.6E-05 3.4E-10 73.9 5.3 115 289-421 2-146 (176)
23 TIGR01656 Histidinol-ppas hist 97.8 1.2E-05 2.6E-10 72.6 3.5 117 289-421 1-141 (147)
24 COG0637 Predicted phosphatase/ 97.8 3.7E-06 8E-11 81.4 0.1 99 327-426 85-187 (221)
25 TIGR01686 FkbH FkbH-like domai 97.8 3.5E-05 7.6E-10 78.5 6.4 108 288-411 3-116 (320)
26 PF12689 Acid_PPase: Acid Phos 97.8 7.2E-05 1.6E-09 70.6 7.5 114 288-411 3-137 (169)
27 PHA02597 30.2 hypothetical pro 97.7 4.6E-06 1E-10 77.9 -0.8 96 327-424 73-173 (197)
28 TIGR01261 hisB_Nterm histidino 97.7 4.5E-05 9.8E-10 70.8 5.8 123 289-426 2-148 (161)
29 PRK08942 D,D-heptose 1,7-bisph 97.7 5.6E-05 1.2E-09 70.3 6.1 116 288-420 3-142 (181)
30 PHA02530 pseT polynucleotide k 97.7 3.1E-05 6.8E-10 77.0 3.9 128 286-424 156-295 (300)
31 PLN02940 riboflavin kinase 97.6 1.1E-05 2.4E-10 84.4 -0.9 96 327-423 92-192 (382)
32 TIGR01549 HAD-SF-IA-v1 haloaci 97.6 2.1E-05 4.6E-10 70.2 0.8 82 327-411 63-147 (154)
33 TIGR01664 DNA-3'-Pase DNA 3'-p 97.4 0.00036 7.8E-09 65.0 6.8 107 288-408 13-137 (166)
34 PF13419 HAD_2: Haloacid dehal 97.4 0.00015 3.4E-09 64.0 4.0 94 326-420 75-172 (176)
35 TIGR01672 AphA HAD superfamily 97.4 0.00018 3.9E-09 71.2 4.5 133 285-422 60-208 (237)
36 TIGR01489 DKMTPPase-SF 2,3-dik 97.3 0.00023 5.1E-09 64.9 4.2 86 327-413 71-177 (188)
37 TIGR01509 HAD-SF-IA-v3 haloaci 97.2 0.0003 6.5E-09 63.8 4.0 92 327-420 84-179 (183)
38 PRK13582 thrH phosphoserine ph 97.2 8.8E-05 1.9E-09 69.3 0.5 94 327-421 67-167 (205)
39 PRK06769 hypothetical protein; 97.2 0.00028 6E-09 65.8 3.8 117 289-423 5-135 (173)
40 TIGR01668 YqeG_hyp_ppase HAD s 97.2 0.00052 1.1E-08 63.8 5.5 110 286-424 23-135 (170)
41 KOG3109 Haloacid dehalogenase- 97.2 0.00024 5.1E-09 69.8 3.1 90 327-418 99-198 (244)
42 PLN03243 haloacid dehalogenase 97.1 0.00048 1E-08 68.6 4.8 98 327-425 108-209 (260)
43 PLN02770 haloacid dehalogenase 97.1 0.00058 1.3E-08 66.8 5.3 97 327-424 107-207 (248)
44 PRK05446 imidazole glycerol-ph 97.1 0.0016 3.6E-08 68.0 8.8 121 287-422 1-145 (354)
45 PF05152 DUF705: Protein of un 97.1 0.0015 3.3E-08 66.3 8.0 71 286-378 120-192 (297)
46 TIGR02253 CTE7 HAD superfamily 97.1 0.00046 1E-08 65.1 4.1 95 327-422 93-192 (221)
47 TIGR01993 Pyr-5-nucltdase pyri 97.1 0.00033 7.1E-09 64.7 2.9 92 327-421 83-181 (184)
48 TIGR01454 AHBA_synth_RP 3-amin 97.1 0.00054 1.2E-08 64.4 4.1 96 327-423 74-173 (205)
49 COG0546 Gph Predicted phosphat 97.0 0.00047 1E-08 66.3 3.5 95 327-422 88-186 (220)
50 PRK11009 aphA acid phosphatase 97.0 0.0021 4.5E-08 63.7 7.7 131 285-421 60-207 (237)
51 TIGR02254 YjjG/YfnB HAD superf 97.0 0.00072 1.6E-08 63.5 4.1 94 327-421 96-194 (224)
52 TIGR01449 PGP_bact 2-phosphogl 97.0 0.00079 1.7E-08 63.1 4.2 97 327-424 84-184 (213)
53 TIGR01428 HAD_type_II 2-haloal 97.0 0.00062 1.3E-08 63.5 3.4 94 327-421 91-188 (198)
54 PLN02954 phosphoserine phospha 96.9 0.00042 9.1E-09 65.8 1.8 92 327-420 83-191 (224)
55 TIGR01670 YrbI-phosphatas 3-de 96.9 0.0013 2.8E-08 60.2 4.6 112 289-420 2-114 (154)
56 TIGR02137 HSK-PSP phosphoserin 96.9 0.00071 1.5E-08 65.1 2.9 49 327-376 67-115 (203)
57 PRK10826 2-deoxyglucose-6-phos 96.8 0.0014 3E-08 62.5 4.5 101 327-428 91-195 (222)
58 PRK09456 ?-D-glucose-1-phospha 96.8 0.0013 2.7E-08 61.9 4.0 100 327-426 83-186 (199)
59 PRK09449 dUMP phosphatase; Pro 96.7 0.0015 3.3E-08 62.0 4.3 93 327-420 94-191 (224)
60 TIGR01689 EcbF-BcbF capsule bi 96.7 0.0034 7.4E-08 56.6 6.3 73 289-378 2-87 (126)
61 TIGR01663 PNK-3'Pase polynucle 96.7 0.0028 6.1E-08 69.5 6.4 109 286-408 166-294 (526)
62 TIGR02009 PGMB-YQAB-SF beta-ph 96.7 0.00094 2E-08 61.0 2.2 92 327-421 87-182 (185)
63 PLN02575 haloacid dehalogenase 96.7 0.0026 5.6E-08 67.2 5.6 98 327-425 215-316 (381)
64 PRK10725 fructose-1-P/6-phosph 96.6 0.0014 3.1E-08 60.2 3.0 94 327-422 87-183 (188)
65 PRK11587 putative phosphatase; 96.6 0.0039 8.4E-08 59.5 5.9 97 327-425 82-182 (218)
66 TIGR01422 phosphonatase phosph 96.5 0.003 6.5E-08 61.5 4.7 98 327-424 98-200 (253)
67 PRK13226 phosphoglycolate phos 96.4 0.0043 9.3E-08 59.9 4.7 95 327-422 94-192 (229)
68 PRK13222 phosphoglycolate phos 96.3 0.0048 1E-07 58.2 4.8 93 327-420 92-188 (226)
69 TIGR01491 HAD-SF-IB-PSPlk HAD- 96.3 0.0083 1.8E-07 55.4 5.8 94 327-421 79-186 (201)
70 TIGR01459 HAD-SF-IIA-hyp4 HAD- 96.2 0.0078 1.7E-07 58.6 5.8 95 288-408 8-105 (242)
71 PRK13223 phosphoglycolate phos 96.2 0.0054 1.2E-07 61.2 4.6 94 327-421 100-197 (272)
72 PRK11133 serB phosphoserine ph 96.1 0.0018 4E-08 66.7 0.9 95 327-422 180-288 (322)
73 PRK09484 3-deoxy-D-manno-octul 96.1 0.0081 1.8E-07 56.5 5.1 115 287-422 20-136 (183)
74 PRK13478 phosphonoacetaldehyde 96.0 0.0098 2.1E-07 58.6 5.4 98 327-424 100-202 (267)
75 TIGR01533 lipo_e_P4 5'-nucleot 96.0 0.0056 1.2E-07 61.7 3.5 92 286-378 73-172 (266)
76 PLN02779 haloacid dehalogenase 96.0 0.0085 1.8E-07 60.3 4.8 98 327-425 143-246 (286)
77 PRK10563 6-phosphogluconate ph 96.0 0.0047 1E-07 58.6 2.8 95 327-424 87-185 (221)
78 TIGR02247 HAD-1A3-hyp Epoxide 96.0 0.0034 7.4E-08 59.1 1.8 98 327-425 93-196 (211)
79 PRK08238 hypothetical protein; 96.0 0.0067 1.5E-07 65.8 4.2 48 327-378 71-119 (479)
80 COG1011 Predicted hydrolase (H 95.9 0.012 2.6E-07 55.4 5.4 93 327-420 98-194 (229)
81 TIGR03351 PhnX-like phosphonat 95.9 0.0082 1.8E-07 56.8 4.2 95 327-421 86-186 (220)
82 TIGR02252 DREG-2 REG-2-like, H 95.9 0.0098 2.1E-07 55.6 4.4 90 328-419 105-199 (203)
83 TIGR01990 bPGM beta-phosphoglu 95.8 0.0072 1.6E-07 55.2 3.2 91 328-421 87-181 (185)
84 TIGR01691 enolase-ppase 2,3-di 95.8 0.0083 1.8E-07 58.7 3.7 94 327-421 94-192 (220)
85 TIGR01548 HAD-SF-IA-hyp1 haloa 95.7 0.021 4.6E-07 53.4 6.1 81 329-410 107-190 (197)
86 PLN02811 hydrolase 95.6 0.011 2.4E-07 56.6 3.6 97 327-424 77-183 (220)
87 COG0560 SerB Phosphoserine pho 95.6 0.021 4.6E-07 55.5 5.5 85 327-412 76-174 (212)
88 PLN02919 haloacid dehalogenase 95.2 0.03 6.6E-07 66.2 6.1 97 329-425 162-262 (1057)
89 PRK09552 mtnX 2-hydroxy-3-keto 95.0 0.06 1.3E-06 51.5 6.7 96 327-422 73-184 (219)
90 PRK06698 bifunctional 5'-methy 94.8 0.029 6.4E-07 60.0 4.3 92 327-421 329-423 (459)
91 COG0561 Cof Predicted hydrolas 94.8 0.091 2E-06 51.4 7.4 58 288-368 3-61 (264)
92 PRK00192 mannosyl-3-phosphogly 94.7 0.075 1.6E-06 52.6 6.6 57 288-367 4-61 (273)
93 PF08645 PNK3P: Polynucleotide 94.6 0.05 1.1E-06 50.5 4.9 104 289-410 1-130 (159)
94 PTZ00445 p36-lilke protein; Pr 94.5 0.051 1.1E-06 53.5 4.7 128 285-425 40-205 (219)
95 PF08282 Hydrolase_3: haloacid 94.5 0.091 2E-06 49.2 6.3 54 291-367 1-55 (254)
96 TIGR02726 phenyl_P_delta pheny 94.4 0.066 1.4E-06 50.4 5.2 114 288-422 7-122 (169)
97 TIGR01493 HAD-SF-IA-v2 Haloaci 94.2 0.015 3.2E-07 53.0 0.4 76 327-409 89-167 (175)
98 COG0241 HisB Histidinol phosph 94.2 0.073 1.6E-06 51.0 5.1 126 288-427 5-154 (181)
99 PF13344 Hydrolase_6: Haloacid 94.2 0.09 1.9E-06 45.2 5.2 50 291-364 1-51 (101)
100 PRK03669 mannosyl-3-phosphogly 94.0 0.17 3.6E-06 50.1 7.4 59 286-367 5-64 (271)
101 TIGR03333 salvage_mtnX 2-hydro 93.8 0.13 2.8E-06 49.1 6.0 94 326-419 68-177 (214)
102 TIGR01487 SPP-like sucrose-pho 93.7 0.17 3.6E-06 48.1 6.5 57 289-368 2-59 (215)
103 PRK10513 sugar phosphate phosp 93.5 0.18 3.9E-06 49.3 6.6 57 288-367 3-60 (270)
104 KOG2914 Predicted haloacid-hal 93.3 0.04 8.6E-07 54.3 1.6 101 326-426 90-197 (222)
105 PRK10530 pyridoxal phosphate ( 93.3 0.25 5.4E-06 48.1 7.1 58 288-368 3-61 (272)
106 TIGR02461 osmo_MPG_phos mannos 93.2 0.22 4.7E-06 48.5 6.5 53 291-367 2-55 (225)
107 TIGR01544 HAD-SF-IE haloacid d 93.2 0.2 4.4E-06 51.0 6.5 104 327-431 120-248 (277)
108 PRK01158 phosphoglycolate phos 92.9 0.32 7E-06 46.2 7.1 57 289-368 4-61 (230)
109 TIGR02463 MPGP_rel mannosyl-3- 92.9 0.23 4.9E-06 47.2 6.0 54 291-367 2-56 (221)
110 PF09419 PGP_phosphatase: Mito 92.9 0.28 6.2E-06 46.5 6.6 96 283-408 36-146 (168)
111 COG2179 Predicted hydrolase of 92.9 0.12 2.5E-06 49.3 3.9 117 279-425 19-141 (175)
112 TIGR00099 Cof-subfamily Cof su 92.8 0.22 4.8E-06 48.5 6.0 55 290-367 1-56 (256)
113 PF06941 NT5C: 5' nucleotidase 92.8 0.024 5.2E-07 53.4 -0.8 80 327-421 72-158 (191)
114 PRK15126 thiamin pyrimidine py 92.5 0.33 7.1E-06 47.8 6.7 57 289-368 3-60 (272)
115 PRK10976 putative hydrolase; P 92.4 0.33 7.2E-06 47.4 6.6 57 289-368 3-60 (266)
116 smart00775 LNS2 LNS2 domain. T 92.1 0.34 7.3E-06 44.9 6.0 61 291-364 2-67 (157)
117 TIGR01486 HAD-SF-IIB-MPGP mann 91.7 0.37 8E-06 47.1 6.0 55 290-367 1-56 (256)
118 COG3882 FkbH Predicted enzyme 91.7 0.23 5E-06 54.1 4.9 126 285-425 219-355 (574)
119 TIGR01488 HAD-SF-IB Haloacid D 91.5 0.6 1.3E-05 42.2 6.9 49 327-376 72-121 (177)
120 TIGR01484 HAD-SF-IIB HAD-super 91.3 0.39 8.4E-06 45.0 5.5 54 290-365 1-55 (204)
121 PRK10444 UMP phosphatase; Prov 91.0 0.32 6.9E-06 48.3 4.9 54 289-366 2-56 (248)
122 TIGR01482 SPP-subfamily Sucros 90.8 0.58 1.3E-05 44.2 6.2 53 291-366 1-54 (225)
123 TIGR01456 CECR5 HAD-superfamil 90.8 0.38 8.3E-06 49.3 5.3 53 289-365 1-62 (321)
124 PRK10748 flavin mononucleotide 90.3 0.19 4.1E-06 48.8 2.5 89 327-421 112-204 (238)
125 PTZ00174 phosphomannomutase; P 90.3 0.65 1.4E-05 45.5 6.2 52 288-362 5-57 (247)
126 PF06888 Put_Phosphatase: Puta 90.2 0.38 8.2E-06 47.9 4.5 49 327-376 70-121 (234)
127 TIGR01458 HAD-SF-IIA-hyp3 HAD- 89.9 0.37 8.1E-06 47.8 4.2 47 289-355 2-49 (257)
128 PRK10187 trehalose-6-phosphate 89.7 0.7 1.5E-05 46.2 6.0 59 288-364 14-74 (266)
129 PF11019 DUF2608: Protein of u 89.4 0.44 9.6E-06 47.6 4.4 101 326-426 79-210 (252)
130 PLN02645 phosphoglycolate phos 89.4 0.43 9.3E-06 48.6 4.3 53 288-364 28-81 (311)
131 PRK12702 mannosyl-3-phosphogly 89.1 0.96 2.1E-05 46.7 6.6 57 289-368 2-59 (302)
132 TIGR01452 PGP_euk phosphoglyco 89.0 0.61 1.3E-05 46.5 5.0 41 289-353 3-44 (279)
133 TIGR01490 HAD-SF-IB-hyp1 HAD-s 88.1 0.73 1.6E-05 42.9 4.6 84 327-411 86-184 (202)
134 COG4502 5'(3')-deoxyribonucleo 87.9 0.5 1.1E-05 44.2 3.3 85 327-426 67-155 (180)
135 PLN02423 phosphomannomutase 87.2 1.3 2.9E-05 43.6 6.1 54 287-366 6-59 (245)
136 PRK14502 bifunctional mannosyl 86.3 2.3 5E-05 48.5 8.0 60 285-367 413-473 (694)
137 TIGR01485 SPP_plant-cyano sucr 86.0 1.3 2.8E-05 43.2 5.3 60 288-367 1-61 (249)
138 PLN02887 hydrolase family prot 85.9 1.6 3.6E-05 48.8 6.6 59 286-367 306-365 (580)
139 TIGR02244 HAD-IG-Ncltidse HAD 85.9 1.5 3.3E-05 46.0 5.9 53 324-376 180-240 (343)
140 TIGR01457 HAD-SF-IIA-hyp2 HAD- 85.7 1.2 2.6E-05 43.9 4.9 53 289-365 2-58 (249)
141 COG0647 NagD Predicted sugar p 82.9 1.5 3.3E-05 44.6 4.3 53 288-364 8-61 (269)
142 COG2503 Predicted secreted aci 82.7 1.4 2.9E-05 44.6 3.7 80 285-365 76-161 (274)
143 TIGR01675 plant-AP plant acid 82.1 3.8 8.3E-05 40.8 6.7 91 286-378 75-172 (229)
144 TIGR01460 HAD-SF-IIA Haloacid 80.1 2.1 4.5E-05 41.8 4.0 50 291-364 1-55 (236)
145 PLN02151 trehalose-phosphatase 80.0 3.2 7E-05 43.8 5.6 60 285-362 95-154 (354)
146 KOG3120 Predicted haloacid deh 79.7 0.84 1.8E-05 45.5 1.1 40 327-366 83-124 (256)
147 TIGR00685 T6PP trehalose-phosp 78.9 1.8 3.9E-05 42.4 3.2 48 287-352 2-51 (244)
148 COG1877 OtsB Trehalose-6-phosp 78.7 3.9 8.5E-05 41.5 5.6 61 284-362 14-76 (266)
149 PLN02580 trehalose-phosphatase 78.7 3.8 8.2E-05 43.7 5.7 61 285-363 116-176 (384)
150 COG4359 Uncharacterized conser 78.4 5.3 0.00012 39.0 6.0 42 327-368 72-114 (220)
151 PRK10725 fructose-1-P/6-phosph 78.4 1.2 2.7E-05 40.7 1.8 16 288-303 5-20 (188)
152 PRK11587 putative phosphatase; 77.8 1.2 2.6E-05 42.4 1.5 16 288-303 3-18 (218)
153 PLN03017 trehalose-phosphatase 77.5 4.2 9.2E-05 43.1 5.6 60 285-362 108-167 (366)
154 PF00702 Hydrolase: haloacid d 76.7 2.8 6.1E-05 38.6 3.6 79 326-408 125-205 (215)
155 TIGR01511 ATPase-IB1_Cu copper 74.6 5.8 0.00013 44.0 6.0 85 326-421 403-489 (562)
156 PRK11590 hypothetical protein; 74.3 1.8 3.9E-05 41.4 1.7 39 327-365 94-134 (211)
157 TIGR01548 HAD-SF-IA-hyp1 haloa 74.2 1.4 3.1E-05 41.1 1.0 14 290-303 2-15 (197)
158 PF03767 Acid_phosphat_B: HAD 73.9 3 6.4E-05 41.1 3.2 73 286-364 70-152 (229)
159 TIGR01993 Pyr-5-nucltdase pyri 72.5 2 4.3E-05 39.5 1.5 14 290-303 2-15 (184)
160 TIGR02253 CTE7 HAD superfamily 71.8 2.2 4.8E-05 40.1 1.7 15 289-303 3-17 (221)
161 TIGR03351 PhnX-like phosphonat 71.2 2.2 4.7E-05 40.3 1.5 15 289-303 2-16 (220)
162 TIGR02009 PGMB-YQAB-SF beta-ph 70.4 2.2 4.8E-05 38.8 1.3 15 289-303 2-16 (185)
163 PRK13226 phosphoglycolate phos 70.2 2.1 4.6E-05 41.2 1.2 15 289-303 13-27 (229)
164 TIGR01422 phosphonatase phosph 69.3 2.7 5.9E-05 40.9 1.7 15 289-303 3-17 (253)
165 PLN03243 haloacid dehalogenase 68.6 3 6.5E-05 41.6 1.9 19 285-303 21-39 (260)
166 PLN02770 haloacid dehalogenase 68.6 2.8 6E-05 41.1 1.6 16 288-303 22-37 (248)
167 TIGR02252 DREG-2 REG-2-like, H 68.5 2.5 5.4E-05 39.4 1.2 14 290-303 2-15 (203)
168 PRK13478 phosphonoacetaldehyde 68.4 2.7 5.9E-05 41.4 1.5 16 288-303 4-19 (267)
169 PRK13223 phosphoglycolate phos 68.0 3 6.5E-05 41.6 1.8 16 288-303 13-28 (272)
170 PF05116 S6PP: Sucrose-6F-phos 67.7 8.4 0.00018 38.1 4.8 54 288-365 2-57 (247)
171 PRK10748 flavin mononucleotide 67.5 3 6.6E-05 40.5 1.7 16 288-303 10-25 (238)
172 PRK11590 hypothetical protein; 67.3 8.3 0.00018 36.8 4.6 17 287-303 5-21 (211)
173 PRK14501 putative bifunctional 65.7 11 0.00023 43.1 5.8 62 285-364 489-552 (726)
174 TIGR01454 AHBA_synth_RP 3-amin 64.7 2.6 5.6E-05 39.5 0.5 13 291-303 1-13 (205)
175 TIGR01990 bPGM beta-phosphoglu 64.6 3.1 6.8E-05 37.8 1.1 14 290-303 1-14 (185)
176 PRK10826 2-deoxyglucose-6-phos 64.5 3.9 8.5E-05 38.8 1.8 17 287-303 6-22 (222)
177 PLN02779 haloacid dehalogenase 63.9 3.8 8.3E-05 41.3 1.6 18 286-303 38-55 (286)
178 TIGR02471 sucr_syn_bact_C sucr 63.6 9.2 0.0002 36.8 4.2 54 290-367 1-54 (236)
179 TIGR01545 YfhB_g-proteo haloac 63.4 16 0.00035 35.2 5.7 38 327-364 93-132 (210)
180 TIGR02254 YjjG/YfnB HAD superf 63.0 3.7 8.1E-05 38.4 1.3 15 289-303 2-16 (224)
181 TIGR01491 HAD-SF-IB-PSPlk HAD- 62.9 4.4 9.6E-05 37.2 1.7 16 288-303 4-19 (201)
182 TIGR01449 PGP_bact 2-phosphogl 62.6 3 6.5E-05 38.9 0.6 13 291-303 1-13 (213)
183 PRK09449 dUMP phosphatase; Pro 62.4 3.8 8.2E-05 38.8 1.2 14 289-302 4-17 (224)
184 TIGR01428 HAD_type_II 2-haloal 62.2 4 8.6E-05 38.0 1.3 15 289-303 2-16 (198)
185 TIGR02247 HAD-1A3-hyp Epoxide 61.8 4.5 9.7E-05 38.0 1.6 15 289-303 3-17 (211)
186 PRK13222 phosphoglycolate phos 61.8 4 8.7E-05 38.3 1.3 16 288-303 6-21 (226)
187 COG3769 Predicted hydrolase (H 61.7 25 0.00053 35.5 6.7 58 288-369 7-65 (274)
188 TIGR01493 HAD-SF-IA-v2 Haloaci 61.1 4.1 8.8E-05 37.0 1.1 13 291-303 2-14 (175)
189 PRK10563 6-phosphogluconate ph 60.2 4.8 0.0001 38.1 1.5 16 288-303 4-19 (221)
190 TIGR01680 Veg_Stor_Prot vegeta 59.3 12 0.00026 38.4 4.2 90 287-378 100-197 (275)
191 PF13419 HAD_2: Haloacid dehal 58.8 4.6 0.0001 35.3 1.0 13 291-303 1-13 (176)
192 KOG3085 Predicted hydrolase (H 57.3 5.6 0.00012 39.9 1.4 90 325-419 111-207 (237)
193 PF08235 LNS2: LNS2 (Lipin/Ned 57.1 29 0.00063 32.7 6.1 62 291-364 2-64 (157)
194 TIGR01512 ATPase-IB2_Cd heavy 56.9 9.3 0.0002 42.1 3.2 87 326-421 360-448 (536)
195 TIGR01509 HAD-SF-IA-v3 haloaci 55.9 5.1 0.00011 36.0 0.9 13 291-303 2-14 (183)
196 TIGR01525 ATPase-IB_hvy heavy 55.6 11 0.00024 41.5 3.6 87 326-421 382-470 (556)
197 PF12710 HAD: haloacid dehalog 53.1 12 0.00027 33.9 2.9 47 329-375 86-138 (192)
198 PRK06698 bifunctional 5'-methy 49.4 6.7 0.00014 42.1 0.6 16 288-303 241-256 (459)
199 PF08484 Methyltransf_14: C-me 48.5 51 0.0011 30.9 6.2 66 329-425 53-120 (160)
200 PLN02575 haloacid dehalogenase 47.0 10 0.00022 40.5 1.5 18 286-303 129-146 (381)
201 PLN02205 alpha,alpha-trehalose 45.7 34 0.00074 40.2 5.6 60 285-364 593-654 (854)
202 PRK09552 mtnX 2-hydroxy-3-keto 45.0 12 0.00025 35.8 1.4 16 288-303 3-18 (219)
203 PF02358 Trehalose_PPase: Treh 44.5 31 0.00067 33.4 4.3 50 292-359 1-52 (235)
204 TIGR01545 YfhB_g-proteo haloac 44.2 12 0.00027 36.0 1.5 16 288-303 5-20 (210)
205 COG1011 Predicted hydrolase (H 43.0 15 0.00032 34.5 1.8 16 288-303 4-19 (229)
206 PLN02382 probable sucrose-phos 42.5 64 0.0014 34.6 6.7 17 286-302 7-23 (413)
207 PLN03063 alpha,alpha-trehalose 41.3 47 0.001 38.7 5.8 64 285-363 504-569 (797)
208 PRK09456 ?-D-glucose-1-phospha 41.3 15 0.00032 34.4 1.5 14 290-303 2-15 (199)
209 PF05822 UMPH-1: Pyrimidine 5' 35.4 42 0.0009 34.0 3.7 102 326-428 88-213 (246)
210 KOG2134 Polynucleotide kinase 33.7 64 0.0014 34.9 4.9 58 286-353 73-130 (422)
211 TIGR02826 RNR_activ_nrdG3 anae 33.0 94 0.002 28.6 5.4 72 316-407 65-138 (147)
212 PLN02177 glycerol-3-phosphate 32.9 35 0.00075 37.7 2.9 23 345-367 124-147 (497)
213 PLN03064 alpha,alpha-trehalose 32.2 83 0.0018 37.6 5.9 71 285-364 588-660 (934)
214 TIGR01488 HAD-SF-IB Haloacid D 31.4 22 0.00048 31.9 1.0 13 291-303 2-14 (177)
215 PF12710 HAD: haloacid dehalog 30.5 28 0.0006 31.6 1.4 13 291-303 1-13 (192)
216 TIGR01490 HAD-SF-IB-hyp1 HAD-s 29.2 27 0.00058 32.3 1.1 13 291-303 2-14 (202)
217 cd06537 CIDE_N_B CIDE_N domain 25.8 1.1E+02 0.0023 26.1 4.0 15 288-302 39-53 (81)
218 PRK10671 copA copper exporting 25.6 61 0.0013 37.8 3.4 85 328-421 650-735 (834)
219 PLN02919 haloacid dehalogenase 25.2 40 0.00087 40.6 1.9 18 286-303 73-90 (1057)
220 PF05761 5_nucleotid: 5' nucle 25.1 1.2E+02 0.0026 33.2 5.3 53 324-376 179-240 (448)
221 cd06539 CIDE_N_A CIDE_N domain 24.5 1.1E+02 0.0024 25.8 3.9 15 288-302 40-54 (78)
222 cd06536 CIDE_N_ICAD CIDE_N dom 21.8 1.4E+02 0.0029 25.4 3.9 16 287-302 41-56 (80)
223 cd02514 GT13_GLCNAC-TI GT13_GL 21.6 1.1E+02 0.0024 32.2 4.1 40 325-364 6-52 (334)
224 PF00702 Hydrolase: haloacid d 21.4 52 0.0011 30.1 1.5 15 289-303 2-16 (215)
225 smart00266 CAD Domains present 21.1 1.4E+02 0.0029 25.1 3.7 15 288-302 38-52 (74)
226 cd06538 CIDE_N_FSP27 CIDE_N do 20.7 1.3E+02 0.0028 25.5 3.5 15 288-302 39-53 (79)
227 cd01615 CIDE_N CIDE_N domain, 20.6 1.4E+02 0.0031 25.1 3.8 16 287-302 39-54 (78)
No 1
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=100.00 E-value=1.1e-48 Score=385.81 Aligned_cols=180 Identities=58% Similarity=0.964 Sum_probs=172.9
Q ss_pred CCccCCCCceEEEEeccccccccc--ccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhcceEEEEEcCCcHHHH
Q 012169 280 PKETQGRKSVTLVLDLDETLVHST--LEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYA 357 (469)
Q Consensus 280 P~~~~~~kK~tLVLDLDeTLVhSs--~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk~YEIVIfTAs~~~YA 357 (469)
|......+|+|||||||||||||+ .++...++|.+++.+++..+.+||.+|||+++||++++++||++||||+.+.||
T Consensus 81 ~~~~~~~~kk~lVLDLDeTLvHss~~~~~~~~~d~~~~v~~~~~~~~~yV~kRP~vdeFL~~~s~~~e~v~FTAs~~~Ya 160 (262)
T KOG1605|consen 81 PLRLATVGRKTLVLDLDETLVHSSLNLKPIVNADFTVPVEIDGHIHQVYVRKRPHVDEFLSRVSKWYELVLFTASLEVYA 160 (262)
T ss_pred CcccccCCCceEEEeCCCcccccccccCCCCCcceeeeeeeCCcceEEEEEcCCCHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 344557889999999999999999 777789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCceeEEEeecceeeeCCcccccccccCCCCCcEEEEECCchhhccCCCceeeeccccCCCCchhHHHHH
Q 012169 358 AQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWFDDPSDCSLISLL 437 (469)
Q Consensus 358 ~~VLd~LDP~~klf~~rL~Re~C~~~~g~yiKDLs~LGrDLskvIIIDDsp~s~~~qpeNgIpI~~w~dd~~D~eLl~Ll 437 (469)
.+|++.|||.+++|++|+||++|.+.+|+|+|||+.+|+++++||||||+|.+|.+||+|||||++|++++.|+||++|+
T Consensus 161 ~~v~D~LD~~~~i~~~RlyR~~C~~~~g~yvKdls~~~~dL~~viIiDNsP~sy~~~p~NgIpI~sw~~d~~D~eLL~Ll 240 (262)
T KOG1605|consen 161 DPLLDILDPDRKIISHRLYRDSCTLKDGNYVKDLSVLGRDLSKVIIVDNSPQSYRLQPENGIPIKSWFDDPTDTELLKLL 240 (262)
T ss_pred HHHHHHccCCCCeeeeeecccceEeECCcEEEEcceeccCcccEEEEcCChHHhccCccCCCcccccccCCChHHHHHHH
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCcHHHHHhhhCC
Q 012169 438 PFLDILADAEDVRPIIAKTFGS 459 (469)
Q Consensus 438 pfLe~L~~~~DVR~iL~k~f~~ 459 (469)
|||+.|+.++|||++++++||.
T Consensus 241 pfLe~L~~~~Dvr~~l~~~~~~ 262 (262)
T KOG1605|consen 241 PFLEALAFVDDVRPILARRFGN 262 (262)
T ss_pred HHHHHhcccccHHHHHHHhhcC
Confidence 9999999999999999999874
No 2
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=100.00 E-value=2e-40 Score=305.51 Aligned_cols=161 Identities=57% Similarity=0.931 Sum_probs=153.7
Q ss_pred ceEEEEecccccccccccccC-CCCceEEEEecceeceEEEeeCccHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHhCC
Q 012169 288 SVTLVLDLDETLVHSTLEYCD-DADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDP 366 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~-~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk~YEIVIfTAs~~~YA~~VLd~LDP 366 (469)
|+||||||||||||+++.+.. .++|.+.+..++....+||++|||+.+||++|+++|||+|||++.+.||++++++|||
T Consensus 1 k~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~yei~I~Ts~~~~yA~~il~~ldp 80 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKWYELVIFTASLEEYADPVLDILDR 80 (162)
T ss_pred CcEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhcCEEEEEcCCcHHHHHHHHHHHCc
Confidence 579999999999999988765 6788888888888889999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEeecceeeeCCcccccccccCCCCCcEEEEECCchhhccCCCceeeeccccCCCCchhHHHHHHHHHHccCC
Q 012169 367 DGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWFDDPSDCSLISLLPFLDILADA 446 (469)
Q Consensus 367 ~~klf~~rL~Re~C~~~~g~yiKDLs~LGrDLskvIIIDDsp~s~~~qpeNgIpI~~w~dd~~D~eLl~LlpfLe~L~~~ 446 (469)
.+.+|.++++|++|....|.|.|||+.+|+++++||||||++..|..|++|||+|.+|.|+.+|++|++|++||+.|+.+
T Consensus 81 ~~~~f~~~l~r~~~~~~~~~~~K~L~~l~~~~~~vIiVDD~~~~~~~~~~NgI~i~~f~~~~~D~~L~~l~~~L~~l~~~ 160 (162)
T TIGR02251 81 GGKVISRRLYRESCVFTNGKYVKDLSLVGKDLSKVIIIDNSPYSYSLQPDNAIPIKSWFGDPNDTELLNLIPFLEGLRFE 160 (162)
T ss_pred CCCEEeEEEEccccEEeCCCEEeEchhcCCChhhEEEEeCChhhhccCccCEeecCCCCCCCCHHHHHHHHHHHHHHhcc
Confidence 98899999999999998899999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC
Q 012169 447 ED 448 (469)
Q Consensus 447 ~D 448 (469)
+|
T Consensus 161 ~~ 162 (162)
T TIGR02251 161 DD 162 (162)
T ss_pred CC
Confidence 76
No 3
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=100.00 E-value=1.8e-38 Score=287.62 Aligned_cols=158 Identities=51% Similarity=0.856 Sum_probs=130.7
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHhCCCC
Q 012169 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDG 368 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk~YEIVIfTAs~~~YA~~VLd~LDP~~ 368 (469)
|||||||||||||+...+....++... . ....++|++|||+++||++++++|||+|||++.+.||++|++.|+|.+
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~---~-~~~~~~v~~RP~l~~FL~~l~~~~ev~i~T~~~~~ya~~v~~~ldp~~ 76 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKII---D-QRGGYYVKLRPGLDEFLEELSKHYEVVIWTSASEEYAEPVLDALDPNG 76 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEE---T-EEEEEEEEE-TTHHHHHHHHHHHCEEEEE-SS-HHHHHHHHHHHTTTT
T ss_pred CEEEEeCCCcEEEEeecCCCCccccee---c-cccceeEeeCchHHHHHHHHHHhceEEEEEeehhhhhhHHHHhhhhhc
Confidence 699999999999998765543343322 2 566889999999999999999999999999999999999999999988
Q ss_pred CceeEEEeecceeeeCCcccccccccCCCCCcEEEEECCchhhccCCCceeeeccccCC-CCchhHHHHHHHHHHccCCC
Q 012169 369 KLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWFDD-PSDCSLISLLPFLDILADAE 447 (469)
Q Consensus 369 klf~~rL~Re~C~~~~g~yiKDLs~LGrDLskvIIIDDsp~s~~~qpeNgIpI~~w~dd-~~D~eLl~LlpfLe~L~~~~ 447 (469)
.+|.++++|++|....|.++|||+++|+++++||||||++.+|..|++|+|+|++|.++ ++|++|.+|++||+.|+.++
T Consensus 77 ~~~~~~~~r~~~~~~~~~~~KdL~~l~~~~~~vvivDD~~~~~~~~~~N~i~v~~f~~~~~~D~~L~~l~~~L~~l~~~~ 156 (159)
T PF03031_consen 77 KLFSRRLYRDDCTFDKGSYIKDLSKLGRDLDNVVIVDDSPRKWALQPDNGIPVPPFFGDTPNDRELLRLLPFLEELAKED 156 (159)
T ss_dssp SSEEEEEEGGGSEEETTEEE--GGGSSS-GGGEEEEES-GGGGTTSGGGEEE----SSCHTT--HHHHHHHHHHHHHTHS
T ss_pred cccccccccccccccccccccchHHHhhccccEEEEeCCHHHeeccCCceEEeccccCCCcchhHHHHHHHHHHHhCccc
Confidence 89999999999999888889999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CcH
Q 012169 448 DVR 450 (469)
Q Consensus 448 DVR 450 (469)
|||
T Consensus 157 Dvr 159 (159)
T PF03031_consen 157 DVR 159 (159)
T ss_dssp -CH
T ss_pred CCC
Confidence 998
No 4
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=100.00 E-value=1.4e-36 Score=289.24 Aligned_cols=158 Identities=23% Similarity=0.281 Sum_probs=136.4
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHh
Q 012169 285 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDIL 364 (469)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk~YEIVIfTAs~~~YA~~VLd~L 364 (469)
..+|+||||||||||||+... ...+++.+|||+++||++++++|||+||||+++.||+.+++.|
T Consensus 18 ~~~kklLVLDLDeTLvh~~~~----------------~~~~~~~kRP~l~eFL~~~~~~feIvVwTAa~~~ya~~~l~~l 81 (195)
T TIGR02245 18 REGKKLLVLDIDYTLFDHRSP----------------AETGEELMRPYLHEFLTSAYEDYDIVIWSATSMKWIEIKMTEL 81 (195)
T ss_pred CCCCcEEEEeCCCceEccccc----------------CCCceEEeCCCHHHHHHHHHhCCEEEEEecCCHHHHHHHHHHh
Confidence 567899999999999997421 1246789999999999999999999999999999999999999
Q ss_pred CCCC-CceeEEEeeccee------eeCCc-ccccccccC------CCCCcEEEEECCchhhccCCCceeeeccccC----
Q 012169 365 DPDG-KLISRRVYRESCI------FSDGT-YTKDLTVLG------VDLAKVAIIDNSPQVFRLQVNNGIPIESWFD---- 426 (469)
Q Consensus 365 DP~~-klf~~rL~Re~C~------~~~g~-yiKDLs~LG------rDLskvIIIDDsp~s~~~qpeNgIpI~~w~d---- 426 (469)
++.+ ..+..++++++|. ...|. ++|||+.++ +++++||||||+|.++.+||+|||+|++|++
T Consensus 82 ~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKdL~~lw~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i~I~~f~~~~~~ 161 (195)
T TIGR02245 82 GVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKPLGVIWALLPEFYSMKNTIMFDDLRRNFLMNPQNGLKIRPFKKAHAN 161 (195)
T ss_pred cccCCccceEEEEeccccceeeEeeccCcEEEeecHHhhhhcccCCCcccEEEEeCCHHHHhcCCCCccccCCccccCCC
Confidence 8643 2355667778883 23454 499999873 3889999999999999999999999999995
Q ss_pred CCCchhHHHHHHHHHHccCCCCcHHHHHhhhC
Q 012169 427 DPSDCSLISLLPFLDILADAEDVRPIIAKTFG 458 (469)
Q Consensus 427 d~~D~eLl~LlpfLe~L~~~~DVR~iL~k~f~ 458 (469)
+++|+||+.|+|||+.|+.++|||++++++|.
T Consensus 162 ~~~D~eL~~L~~yL~~la~~~Dvr~~~~~~w~ 193 (195)
T TIGR02245 162 RGTDQELLKLTQYLKTIAELEDFSSLDHKEWE 193 (195)
T ss_pred CcccHHHHHHHHHHHHHhcCcccchhhhcccc
Confidence 57999999999999999999999999998885
No 5
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=99.97 E-value=3.9e-31 Score=243.38 Aligned_cols=138 Identities=31% Similarity=0.449 Sum_probs=118.0
Q ss_pred CCCceEEEEecccccccccccccCCCCce------------EEEEecceeceEEEeeCccHHHHHHHhhcceEEEEEcCC
Q 012169 285 GRKSVTLVLDLDETLVHSTLEYCDDADFT------------FTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTAS 352 (469)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~~~~df~------------~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk~YEIVIfTAs 352 (469)
.++|++||||||||||||+..+....... -...|......+++++|||+.+||+++++.|+++|||++
T Consensus 3 ~~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~yel~I~T~~ 82 (156)
T TIGR02250 3 REKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKLYEMHVYTMG 82 (156)
T ss_pred cCCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhhcEEEEEeCC
Confidence 57899999999999999997654322111 012233335678999999999999999999999999999
Q ss_pred cHHHHHHHHHHhCCCCCceeEE-EeecceeeeCCccccccc-ccCCCCCcEEEEECCchhhccCCCceeeecccc
Q 012169 353 QSIYAAQLLDILDPDGKLISRR-VYRESCIFSDGTYTKDLT-VLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWF 425 (469)
Q Consensus 353 ~~~YA~~VLd~LDP~~klf~~r-L~Re~C~~~~g~yiKDLs-~LGrDLskvIIIDDsp~s~~~qpeNgIpI~~w~ 425 (469)
.+.||+++++.|||.+.+|.+| ++|++|. |.+.|||+ .+|+++++||||||++.+|..||+|+|+|++|.
T Consensus 83 ~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~---~~~~KdL~~i~~~d~~~vvivDd~~~~~~~~~~N~i~i~~~~ 154 (156)
T TIGR02250 83 TRAYAQAIAKLIDPDGKYFGDRIISRDESG---SPHTKSLLRLFPADESMVVIIDDREDVWPWHKRNLIQIEPYN 154 (156)
T ss_pred cHHHHHHHHHHhCcCCCeeccEEEEeccCC---CCccccHHHHcCCCcccEEEEeCCHHHhhcCccCEEEeCCcc
Confidence 9999999999999998899666 5699995 78999995 569999999999999999999999999999995
No 6
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.97 E-value=1.7e-31 Score=270.48 Aligned_cols=159 Identities=36% Similarity=0.649 Sum_probs=150.4
Q ss_pred cCCCCceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhcceEEEEEcCCcHHHHHHHHH
Q 012169 283 TQGRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLD 362 (469)
Q Consensus 283 ~~~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk~YEIVIfTAs~~~YA~~VLd 362 (469)
+..++++||||+|.++|||..|.. ..+|.+++|||++.||.+++++|||||||+....||.+|++
T Consensus 184 Py~Qp~yTLVleledvLVhpdws~---------------~tGwRf~kRPgvD~FL~~~a~~yEIVi~sse~gmt~~pl~d 248 (393)
T KOG2832|consen 184 PYEQPPYTLVLELEDVLVHPDWSY---------------KTGWRFKKRPGVDYFLGHLAKYYEIVVYSSEQGMTVFPLLD 248 (393)
T ss_pred cccCCCceEEEEeeeeEeccchhh---------------hcCceeccCchHHHHHHhhcccceEEEEecCCccchhhhHh
Confidence 446889999999999999998864 36789999999999999999999999999999999999999
Q ss_pred HhCCCCCceeEEEeecceeeeCCcccccccccCCCCCcEEEEECCchhhccCCCceeeeccccCCCCchhHHHHHHHHHH
Q 012169 363 ILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWFDDPSDCSLISLLPFLDI 442 (469)
Q Consensus 363 ~LDP~~klf~~rL~Re~C~~~~g~yiKDLs~LGrDLskvIIIDDsp~s~~~qpeNgIpI~~w~dd~~D~eLl~LlpfLe~ 442 (469)
.|||.| +|+++|||++|.+.+|..+|||+.|+||+++||+||-.+.++.+||+|.|++++|.|+.+|+.|++|++||+.
T Consensus 249 ~lDP~g-~IsYkLfr~~t~y~~G~HvKdls~LNRdl~kVivVd~d~~~~~l~P~N~l~l~~W~Gn~dDt~L~dL~~FL~~ 327 (393)
T KOG2832|consen 249 ALDPKG-YISYKLFRGATKYEEGHHVKDLSKLNRDLQKVIVVDFDANSYKLQPENMLPLEPWSGNDDDTSLFDLLAFLEY 327 (393)
T ss_pred hcCCcc-eEEEEEecCcccccCccchhhhhhhccccceeEEEEccccccccCcccccccCcCCCCcccchhhhHHHHHHH
Confidence 999997 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC--CCCcHHHHHhhh
Q 012169 443 LAD--AEDVRPIIAKTF 457 (469)
Q Consensus 443 L~~--~~DVR~iL~k~f 457 (469)
|+. ++|||++|+.+-
T Consensus 328 ia~~~~eDvR~vL~~y~ 344 (393)
T KOG2832|consen 328 IAQQQVEDVRPVLQSYS 344 (393)
T ss_pred HHHccHHHHHHHHHHhc
Confidence 985 799999997543
No 7
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.95 E-value=5.9e-29 Score=256.90 Aligned_cols=179 Identities=45% Similarity=0.734 Sum_probs=167.7
Q ss_pred CCccCCCCceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhcceEEEEEcCCcHHHHHH
Q 012169 280 PKETQGRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQ 359 (469)
Q Consensus 280 P~~~~~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk~YEIVIfTAs~~~YA~~ 359 (469)
|......++++|++|||+||+|+....+...+|...+......+.+||.+||++++||..++++|++++||++.+.||++
T Consensus 204 ~~~~~~~~~k~L~l~lde~l~~S~~~~~~~~df~~~~e~~~~~~~~~v~kRp~l~~fl~~ls~~~~l~~ft~s~~~y~~~ 283 (390)
T COG5190 204 PVSKSTSPKKTLVLDLDETLVHSSFRYITLLDFLVKVEISLLQHLVYVSKRPELDYFLGKLSKIHELVYFTASVKRYADP 283 (390)
T ss_pred hhhcCCCCccccccCCCccceeeccccccccchhhccccccceeEEEEcCChHHHHHHhhhhhhEEEEEEecchhhhcch
Confidence 33445677899999999999999998888888888887777889999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCceeEEEeecceeeeCCcccccccccCCCCCcEEEEECCchhhccCCCceeeeccccCCCCchhHHHHHHH
Q 012169 360 LLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWFDDPSDCSLISLLPF 439 (469)
Q Consensus 360 VLd~LDP~~klf~~rL~Re~C~~~~g~yiKDLs~LGrDLskvIIIDDsp~s~~~qpeNgIpI~~w~dd~~D~eLl~Llpf 439 (469)
|++.|++.+ .|++++||++|....|.|+|||..+||++.+|||||++|.+|.+||+|+|+|.+|..++.|.+|++|++|
T Consensus 284 v~d~l~~~k-~~~~~lfr~sc~~~~G~~ikDis~i~r~l~~viiId~~p~SY~~~p~~~i~i~~W~~d~~d~el~~ll~~ 362 (390)
T COG5190 284 VLDILDSDK-VFSHRLFRESCVSYLGVYIKDISKIGRSLDKVIIIDNSPASYEFHPENAIPIEKWISDEHDDELLNLLPF 362 (390)
T ss_pred HHHhccccc-eeehhhhcccceeccCchhhhHHhhccCCCceEEeeCChhhhhhCccceeccCcccccccchhhhhhccc
Confidence 999999998 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccC--CCCcHHHHHhhhCC
Q 012169 440 LDILAD--AEDVRPIIAKTFGS 459 (469)
Q Consensus 440 Le~L~~--~~DVR~iL~k~f~~ 459 (469)
|+.|.. ..||+.++..+-+.
T Consensus 363 le~L~~~~~~d~~~~l~~~~~~ 384 (390)
T COG5190 363 LEDLPDRDLKDVSSILQSRLEK 384 (390)
T ss_pred ccccccccchhhhhhhhhhhHh
Confidence 999998 89999999776543
No 8
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.94 E-value=2.8e-26 Score=207.69 Aligned_cols=145 Identities=49% Similarity=0.857 Sum_probs=129.8
Q ss_pred CceEEEEeccccccccccc---ccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhcceEEEEEcCCcHHHHHHHHHH
Q 012169 287 KSVTLVLDLDETLVHSTLE---YCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDI 363 (469)
Q Consensus 287 kK~tLVLDLDeTLVhSs~~---~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk~YEIVIfTAs~~~YA~~VLd~ 363 (469)
+|++|||||||||+|+... +.....+...+.+......+++++|||+.+||++|.+.|+++|||++.+.||+.++++
T Consensus 1 ~k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~~~~l~I~Ts~~~~~~~~il~~ 80 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASELFELVVFTAGLRMYADPVLDL 80 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHHhccEEEEEeCCcHHHHHHHHHH
Confidence 5789999999999999632 2234455666677788889999999999999999999999999999999999999999
Q ss_pred hCCCCCceeEEEeecceeeeCCcccccccccCCCCCcEEEEECCchhhccCCCceeeeccccCCCCch
Q 012169 364 LDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWFDDPSDC 431 (469)
Q Consensus 364 LDP~~klf~~rL~Re~C~~~~g~yiKDLs~LGrDLskvIIIDDsp~s~~~qpeNgIpI~~w~dd~~D~ 431 (469)
+++.+.+|...+++++|...+..|.|+|+++|++++++|+|||++..|..+++|||+|++|.++++|.
T Consensus 81 l~~~~~~f~~i~~~~d~~~~KP~~~k~l~~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i~~f~~~~~d~ 148 (148)
T smart00577 81 LDPKKYFGYRRLFRDECVFVKGKYVKDLSLLGRDLSNVIIIDDSPDSWPFHPENLIPIKPWFGDPDDT 148 (148)
T ss_pred hCcCCCEeeeEEECccccccCCeEeecHHHcCCChhcEEEEECCHHHhhcCccCEEEecCcCCCCCCC
Confidence 99976567899999999887767999999999999999999999999999999999999999999874
No 9
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.80 E-value=6.4e-20 Score=199.18 Aligned_cols=136 Identities=32% Similarity=0.454 Sum_probs=108.5
Q ss_pred CceEEEEecccccccccccccC--------CCCce---E--EEEec--ceeceEEEeeCccHHHHHHHhhcceEEEEEcC
Q 012169 287 KSVTLVLDLDETLVHSTLEYCD--------DADFT---F--TVFFN--MKEHTVYVKQRPHLKTFLERVAEMFEVVIFTA 351 (469)
Q Consensus 287 kK~tLVLDLDeTLVhSs~~~~~--------~~df~---~--~i~~~--~~~~~vyV~lRPgL~eFLe~Lsk~YEIVIfTA 351 (469)
+++.||+|||.||+|+...+.. ..... . -..++ .....+||++||++++||++++++||++|||.
T Consensus 145 ~~L~lv~Dld~tllh~~~~~~l~e~~~~l~~~~~~~~sn~dl~~~~~~~~~~~~~vKlRP~~~efL~~~sklfemhVyTm 224 (635)
T KOG0323|consen 145 KKLHLVLDLDHTLLHTILKSDLSETEKYLKEEAESVESNKDLFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFEMHVYTM 224 (635)
T ss_pred hcceeehhhhhHHHHhhccchhhhhhhhcccccccccccccceeecccCCCceEEEEeCccHHHHHHHHHhhceeEEEec
Confidence 3479999999999999743321 00000 0 01112 23346899999999999999999999999999
Q ss_pred CcHHHHHHHHHHhCCCCCceeEEEe-ecceeeeCCccccccccc-CCCCCcEEEEECCchhhccCCCceeeecccc
Q 012169 352 SQSIYAAQLLDILDPDGKLISRRVY-RESCIFSDGTYTKDLTVL-GVDLAKVAIIDNSPQVFRLQVNNGIPIESWF 425 (469)
Q Consensus 352 s~~~YA~~VLd~LDP~~klf~~rL~-Re~C~~~~g~yiKDLs~L-GrDLskvIIIDDsp~s~~~qpeNgIpI~~w~ 425 (469)
|.+.||..|++.|||.|+||++|++ |+. ....-.+||..+ .++.++||||||+..+|..++.|.|.|.+|.
T Consensus 225 g~R~YA~~i~~liDP~~~lF~dRIisrde---~~~~kt~dL~~~~p~g~smvvIIDDr~dVW~~~~~nLI~i~~y~ 297 (635)
T KOG0323|consen 225 GTRDYALEIAKLIDPEGKYFGDRIISRDE---SPFFKTLDLVLLFPCGDSMVVIIDDRSDVWPDHKRNLIQIAPYP 297 (635)
T ss_pred cchHHHHHHHHHhCCCCccccceEEEecC---CCcccccccccCCCCCCccEEEEeCccccccCCCcceEEeeeee
Confidence 9999999999999999999998887 665 344556777766 4677889999999999999999999999984
No 10
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=98.48 E-value=4.1e-07 Score=85.84 Aligned_cols=138 Identities=14% Similarity=0.064 Sum_probs=91.6
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecc---eeceEEEeeCccHHHHHHHhh-cceEEEEEcCC-cHHHHHHHHHH
Q 012169 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNM---KEHTVYVKQRPHLKTFLERVA-EMFEVVIFTAS-QSIYAAQLLDI 363 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~---~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs-~~~YA~~VLd~ 363 (469)
.++|||||+||..-........-+...-..++ ......+.++||+.++|++|. +.+.+.|.|++ ...++..+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~ 82 (174)
T TIGR01685 3 RVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGT 82 (174)
T ss_pred cEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHh
Confidence 48999999999765432222221110000000 112345788999999999998 67999999988 99999999999
Q ss_pred hCCC--C------CceeEEEeecceeeeC--Ccccccccc-c--CCCCCcEEEEECCchhhccCCCceeeeccccC
Q 012169 364 LDPD--G------KLISRRVYRESCIFSD--GTYTKDLTV-L--GVDLAKVAIIDNSPQVFRLQVNNGIPIESWFD 426 (469)
Q Consensus 364 LDP~--~------klf~~rL~Re~C~~~~--g~yiKDLs~-L--GrDLskvIIIDDsp~s~~~qpeNgIpI~~w~d 426 (469)
++.. + .+|...+..+...... ....+-+.. + |.+++++++|||++........+|+.+.-...
T Consensus 83 ~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~v~~ 158 (174)
T TIGR01685 83 FEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSCYCPS 158 (174)
T ss_pred CCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEEEcCC
Confidence 9865 1 4787777754321100 011122222 2 57899999999999988777888988766643
No 11
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.39 E-value=2.2e-07 Score=82.59 Aligned_cols=111 Identities=15% Similarity=0.133 Sum_probs=75.5
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCC-cHHHHHHHHHHhCC
Q 012169 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTAS-QSIYAAQLLDILDP 366 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs-~~~YA~~VLd~LDP 366 (469)
+.||+||||||+..-..... .+-. .+ .. ...||+.++|+++. +.+.++|.|++ .+.++..+++.+.+
T Consensus 1 kli~~DlD~Tl~~~~~~~~~-~~~~----~~-~~-----~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~ 69 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVVG-EDPI----ID-LE-----VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFED 69 (128)
T ss_pred CEEEEeCCCCCCCCCccccc-CCcc----hh-hH-----HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccc
Confidence 37899999999876210000 0000 00 00 56899999999998 57999999999 99999999998762
Q ss_pred ------CCCceeEEEeecceeeeCCcccccccccC--CCCCcEEEEECCchhh
Q 012169 367 ------DGKLISRRVYRESCIFSDGTYTKDLTVLG--VDLAKVAIIDNSPQVF 411 (469)
Q Consensus 367 ------~~klf~~rL~Re~C~~~~g~yiKDLs~LG--rDLskvIIIDDsp~s~ 411 (469)
-..+|......+.- .....|.+-+..+| ..++++++|||++...
T Consensus 70 ~~~i~~l~~~f~~~~~~~~~-pkp~~~~~a~~~lg~~~~p~~~l~igDs~~n~ 121 (128)
T TIGR01681 70 FGIIFPLAEYFDPLTIGYWL-PKSPRLVEIALKLNGVLKPKSILFVDDRPDNN 121 (128)
T ss_pred cccchhhHhhhhhhhhcCCC-cHHHHHHHHHHHhcCCCCcceEEEECCCHhHH
Confidence 12345544443221 12234566677789 9999999999998653
No 12
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=98.27 E-value=5.1e-07 Score=94.64 Aligned_cols=137 Identities=30% Similarity=0.446 Sum_probs=102.7
Q ss_pred CCCceEEEEecccccccccccccC----------CCCceEEEEecceeceEEEeeCccHHHHHHHhhcceEEEEEcCCcH
Q 012169 285 GRKSVTLVLDLDETLVHSTLEYCD----------DADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQS 354 (469)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~~----------~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk~YEIVIfTAs~~ 354 (469)
..++..||.|+|.|.+|+...+.. .-.+.....+......++++.||++..|+...++.||+.++|.+.+
T Consensus 23 q~~~~~l~~~~~~~~~h~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~i~~~~e~~~~~~~~~ 102 (390)
T COG5190 23 QDKKLILVVDLDQTIIHTTVDPNDPNNVNQSLERTLKSVNDRDPVQEKCAYYVKARPKLFPFLTKISPLYELHIYTMGTR 102 (390)
T ss_pred cCcccccccccccceecccccCCCCCchhhhhhccccchhccccccccccceeeecccccchhhhhchhcceeeEeeccc
Confidence 456678999999999999866511 0011111122223456889999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCceeEEEeecceeeeCCccccccccc-CCCCCcEEEEECCchhhcc--CCCceeeecc
Q 012169 355 IYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVL-GVDLAKVAIIDNSPQVFRL--QVNNGIPIES 423 (469)
Q Consensus 355 ~YA~~VLd~LDP~~klf~~rL~Re~C~~~~g~yiKDLs~L-GrDLskvIIIDDsp~s~~~--qpeNgIpI~~ 423 (469)
.||+.+.+++||.|++|..+....+ ...+.-.|-++++ ..+...++++||++..|.- --.|.++..+
T Consensus 103 ~~~~~~~~i~d~~g~~~~d~~~~~~--~~~~~~~~s~~~l~p~~~n~~vi~~d~~~~~~~~d~~~~~v~~~~ 172 (390)
T COG5190 103 AYAERIAKIIDPTGKLFNDRILSRD--ESGSLSQKSLSRLFPKDQNMVVIIDDRGDVWGVGDMNSNFVAKSP 172 (390)
T ss_pred cchhhhhhccccccccccccccccc--ccccchhhhhhhcCccccccccccccccccCCccchhhhhhcccc
Confidence 9999999999999999987776222 2344556777766 6788999999999999921 2246666666
No 13
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.17 E-value=7.5e-07 Score=84.24 Aligned_cols=96 Identities=13% Similarity=0.126 Sum_probs=78.8
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeee---CCcccccccccCCCCCcEE
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVA 402 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~---~g~yiKDLs~LGrDLskvI 402 (469)
+...||+.++|+++. +.+.++|.|++.+.++..+++.++-.+ +|...+..+.+... ...|.+-++.+|.++++++
T Consensus 81 ~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~-~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~ 159 (214)
T PRK13288 81 VTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDE-FFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEAL 159 (214)
T ss_pred cccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-ceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEE
Confidence 567899999999998 569999999999999999999998765 89888876665432 2356677778899999999
Q ss_pred EEECCchhhccCCCceeeecc
Q 012169 403 IIDNSPQVFRLQVNNGIPIES 423 (469)
Q Consensus 403 IIDDsp~s~~~qpeNgIpI~~ 423 (469)
+|+|++.-+.....+|++...
T Consensus 160 ~iGDs~~Di~aa~~aG~~~i~ 180 (214)
T PRK13288 160 MVGDNHHDILAGKNAGTKTAG 180 (214)
T ss_pred EECCCHHHHHHHHHCCCeEEE
Confidence 999999877766677876543
No 14
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=98.15 E-value=7.2e-07 Score=86.13 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=76.1
Q ss_pred EeeCccHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeeeC---CcccccccccCCCCCcEE
Q 012169 327 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 402 (469)
Q Consensus 327 V~lRPgL~eFLe~Lsk-~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~~---g~yiKDLs~LGrDLskvI 402 (469)
+...||+.++|+.+.+ .+.++|-|++.+.++...++.+.-.. +|+..+..+.....+ ..|.+-++++|.++++++
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l 170 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDA-HLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTL 170 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHH-HCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEE
Confidence 5678999999999995 69999999999999999999887654 788888765443222 246677788999999999
Q ss_pred EEECCchhhccCCCceee
Q 012169 403 IIDNSPQVFRLQVNNGIP 420 (469)
Q Consensus 403 IIDDsp~s~~~qpeNgIp 420 (469)
+|+|++.-......+|+.
T Consensus 171 ~igDs~~di~aA~~aG~~ 188 (224)
T PRK14988 171 FIDDSEPILDAAAQFGIR 188 (224)
T ss_pred EEcCCHHHHHHHHHcCCe
Confidence 999999887777778885
No 15
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.15 E-value=1.5e-06 Score=73.14 Aligned_cols=107 Identities=21% Similarity=0.280 Sum_probs=73.6
Q ss_pred EEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhCCCC
Q 012169 290 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILDPDG 368 (469)
Q Consensus 290 tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk~-YEIVIfTAs~~~YA~~VLd~LDP~~ 368 (469)
++|||+||||+........ ...+..+|++.++|+++.+. +.++|.|++.+.++..+++.+....
T Consensus 1 ~~vfD~D~tl~~~~~~~~~---------------~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~ 65 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE---------------IEELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDD 65 (139)
T ss_pred CeEEccCCceEccCccccc---------------cccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCch
Confidence 4799999999876421100 22367899999999999965 9999999999999999999986543
Q ss_pred CceeEEEeecceeee----------------C---CcccccccccCCCCCcEEEEECCchhhc
Q 012169 369 KLISRRVYRESCIFS----------------D---GTYTKDLTVLGVDLAKVAIIDNSPQVFR 412 (469)
Q Consensus 369 klf~~rL~Re~C~~~----------------~---g~yiKDLs~LGrDLskvIIIDDsp~s~~ 412 (469)
++..++..+..... . ..+..-+..++...+.++.|+|++.-..
T Consensus 66 -~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igD~~~d~~ 127 (139)
T cd01427 66 -YFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLLGVDPEEVLMVGDSLNDIE 127 (139)
T ss_pred -hhhheeccchhhhhcccccccccccccccCCCCHHHHHHHHHHcCCChhhEEEeCCCHHHHH
Confidence 34444443322111 1 1122333455777899999999996543
No 16
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.12 E-value=2.7e-06 Score=74.59 Aligned_cols=114 Identities=20% Similarity=0.205 Sum_probs=77.6
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCc--------HHHHHH
Q 012169 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQ--------SIYAAQ 359 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~--------~~YA~~ 359 (469)
+.|+||+||||++.... . .........|++.++|++|. +.+.++|.|++. ..++..
T Consensus 1 k~~~~D~dgtL~~~~~~--~-------------~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~ 65 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPY--V-------------DDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVAR 65 (132)
T ss_pred CEEEEeCCCceecCCCC--C-------------CCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHH
Confidence 37899999999964100 0 00112456899999999998 569999999999 888999
Q ss_pred HHHHhCCCCCceeEEEeeccee-eeCCccccccccc-CCCCCcEEEEEC-CchhhccCCCceee
Q 012169 360 LLDILDPDGKLISRRVYRESCI-FSDGTYTKDLTVL-GVDLAKVAIIDN-SPQVFRLQVNNGIP 420 (469)
Q Consensus 360 VLd~LDP~~klf~~rL~Re~C~-~~~g~yiKDLs~L-GrDLskvIIIDD-sp~s~~~qpeNgIp 420 (469)
+++.+... +...++...+. -....|.+-++.+ +.+++++++|+| ...-......+|+.
T Consensus 66 ~l~~~~l~---~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~ 126 (132)
T TIGR01662 66 RLEELGVP---IDVLYACPHCRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLA 126 (132)
T ss_pred HHHHCCCC---EEEEEECCCCCCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCe
Confidence 99998764 22222322111 1123556667788 599999999999 56555444455554
No 17
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.11 E-value=1.2e-05 Score=73.37 Aligned_cols=136 Identities=18% Similarity=0.089 Sum_probs=92.9
Q ss_pred EEEEecccccccccccccCCCCceEEEEecc--eeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCC
Q 012169 290 TLVLDLDETLVHSTLEYCDDADFTFTVFFNM--KEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDP 366 (469)
Q Consensus 290 tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~--~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP 366 (469)
.+|||+|+||.....-..-.+-|.. +..+. ...+.-|.+||++.+||+++. ..|-+..+|.....-|-++|.+||.
T Consensus 2 ~i~~d~d~t~wdhh~iSsl~pPf~r-Vs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~ 80 (164)
T COG4996 2 AIVFDADKTLWDHHNISSLEPPFRR-VSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDL 80 (164)
T ss_pred cEEEeCCCcccccccchhcCCccee-cCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhch
Confidence 5899999999653210000111110 00000 123566899999999999999 6699999999999999999999999
Q ss_pred CCCceeEEEeecceeeeCCccccccccc------CCCCCcEEEEECCchhh---ccCCCceeeeccccCCC
Q 012169 367 DGKLISRRVYRESCIFSDGTYTKDLTVL------GVDLAKVAIIDNSPQVF---RLQVNNGIPIESWFDDP 428 (469)
Q Consensus 367 ~~klf~~rL~Re~C~~~~g~yiKDLs~L------GrDLskvIIIDDsp~s~---~~qpeNgIpI~~w~dd~ 428 (469)
.+ ||.+.....|-. ......+-|+.+ ...++++|.+||+...+ +....|.=.++.|.+-.
T Consensus 81 ~~-yFhy~ViePhP~-K~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~iH~~~Iwe~~G~V~~~~~~~Di~ 149 (164)
T COG4996 81 LQ-YFHYIVIEPHPY-KFLMLSQLLREINTERNQKIKPSEIVYLDDRRIHFGNIWEYLGNVKCLEMWKDIS 149 (164)
T ss_pred hh-hEEEEEecCCCh-hHHHHHHHHHHHHHhhccccCcceEEEEecccccHHHHHHhcCCeeeeEeecchH
Confidence 86 897777765532 111222333322 34789999999999766 44677888888888763
No 18
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=98.04 E-value=1.6e-06 Score=86.86 Aligned_cols=95 Identities=11% Similarity=0.078 Sum_probs=71.4
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeeeCCcccccccccCCCCCcEEEEE
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIID 405 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~~g~yiKDLs~LGrDLskvIIID 405 (469)
+...||+.++|++|. +.+.++|.|++.+.++..+++.++... +|...+..+........+.+-+..+|.+++++++|+
T Consensus 141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~-~F~~vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~IG 219 (273)
T PRK13225 141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRS-LFSVVQAGTPILSKRRALSQLVAREGWQPAAVMYVG 219 (273)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-heEEEEecCCCCCCHHHHHHHHHHhCcChhHEEEEC
Confidence 456799999999998 569999999999999999999998764 787665543321111233444556788899999999
Q ss_pred CCchhhccCCCceeeec
Q 012169 406 NSPQVFRLQVNNGIPIE 422 (469)
Q Consensus 406 Dsp~s~~~qpeNgIpI~ 422 (469)
|++.-.......|+...
T Consensus 220 Ds~~Di~aA~~AG~~~I 236 (273)
T PRK13225 220 DETRDVEAARQVGLIAV 236 (273)
T ss_pred CCHHHHHHHHHCCCeEE
Confidence 99976655556676654
No 19
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=97.95 E-value=2.1e-05 Score=80.15 Aligned_cols=124 Identities=15% Similarity=0.151 Sum_probs=85.9
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeC-ccHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHH
Q 012169 285 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQR-PHLKTFLERVAE-MFEVVIFTASQSIYAAQLLD 362 (469)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lR-PgL~eFLe~Lsk-~YEIVIfTAs~~~YA~~VLd 362 (469)
...++.+||||||||+.... -|..| |++.+.|++|.+ .+.++|||++.+.++..+++
T Consensus 123 ~~~~kvIvFDLDgTLi~~~~---------------------~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~ 181 (301)
T TIGR01684 123 FEPPHVVVFDLDSTLITDEE---------------------PVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMR 181 (301)
T ss_pred cccceEEEEecCCCCcCCCC---------------------ccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHH
Confidence 34567999999999987631 26679 999999999996 58999999999999999999
Q ss_pred HhCCCCCceeEEEeecceeee----------------CCcccccc-----------------cccCCCCCc-EEEEECCc
Q 012169 363 ILDPDGKLISRRVYRESCIFS----------------DGTYTKDL-----------------TVLGVDLAK-VAIIDNSP 408 (469)
Q Consensus 363 ~LDP~~klf~~rL~Re~C~~~----------------~g~yiKDL-----------------s~LGrDLsk-vIIIDDsp 408 (469)
.++..+ +|...+..++.... ...+..|. .+.|..--+ +-+|||-+
T Consensus 182 ~lGLd~-YFdvIIs~Gdv~~~kp~~e~~d~~~~~~~~~~~f~~d~~~~~~lPKSprvvl~yL~~~gvn~~KtitLVDDl~ 260 (301)
T TIGR01684 182 KVKLDR-YFDIIISGGHKAEEYSTMSTEDRQYRYVFTKTPFYLNTTDGKRLPKSPRVVLWYLYDLGVNYFKSITLVDDLA 260 (301)
T ss_pred HcCCCc-ccCEEEECCccccCCCCccccccccceEEecCCeEEeCCCCCcCCCCCeehHHHHHHcCCceeeeEEEeccCc
Confidence 999886 77666664433221 11122222 223544433 56889988
Q ss_pred hhhccCCCceeeeccccCCCCch
Q 012169 409 QVFRLQVNNGIPIESWFDDPSDC 431 (469)
Q Consensus 409 ~s~~~qpeNgIpI~~w~dd~~D~ 431 (469)
.. ...-+|-+.++..-.-.+|-
T Consensus 261 ~N-n~~YD~fv~v~rcp~P~~DW 282 (301)
T TIGR01684 261 DN-NFNYDYFVNVSRCPVPVNDW 282 (301)
T ss_pred cc-CccceeEEEeeeCCCCchHH
Confidence 53 23557777777665444443
No 20
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=97.93 E-value=4e-05 Score=78.13 Aligned_cols=125 Identities=17% Similarity=0.196 Sum_probs=88.1
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeC-ccHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHH
Q 012169 285 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQR-PHLKTFLERVAE-MFEVVIFTASQSIYAAQLLD 362 (469)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lR-PgL~eFLe~Lsk-~YEIVIfTAs~~~YA~~VLd 362 (469)
.+.++.+|+||||||+.... -|..| |++.+.|++|.+ .+.++|||++.++++..+++
T Consensus 125 ~~~~~~i~~D~D~TL~~~~~---------------------~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le 183 (303)
T PHA03398 125 WEIPHVIVFDLDSTLITDEE---------------------PVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLK 183 (303)
T ss_pred eeeccEEEEecCCCccCCCC---------------------ccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHH
Confidence 35667999999999997631 26678 999999999995 69999999999999999999
Q ss_pred HhCCCCCceeEEEeecceeee----------------CCccccccc-----------------ccCCCCCc-EEEEECCc
Q 012169 363 ILDPDGKLISRRVYRESCIFS----------------DGTYTKDLT-----------------VLGVDLAK-VAIIDNSP 408 (469)
Q Consensus 363 ~LDP~~klf~~rL~Re~C~~~----------------~g~yiKDLs-----------------~LGrDLsk-vIIIDDsp 408 (469)
.++..+ +|...+..++.... ...+..|.. +.|..--+ +-+|||-+
T Consensus 184 ~lgL~~-yFDvII~~g~i~~k~~~~~~~d~~~~~~~~~~~f~~d~~~~~~lPKSprvVl~yL~~~gvn~~KtiTLVDDl~ 262 (303)
T PHA03398 184 ETKLEG-YFDIIICGGRKAGEYSRRVIVDNKYKMVFVKKPFYLDVTDVKNLPKSPRVVLWYLRKKGVNYFKTITLVDDLK 262 (303)
T ss_pred HcCCCc-cccEEEECCCcccccccceeecccceeEEecCceeEeCCcccCCCCCCeehHHHHHHcCcceeccEEEeccCc
Confidence 999875 77666654443221 112222222 23444434 46788887
Q ss_pred hhhccCCCceeeeccccCCCCchh
Q 012169 409 QVFRLQVNNGIPIESWFDDPSDCS 432 (469)
Q Consensus 409 ~s~~~qpeNgIpI~~w~dd~~D~e 432 (469)
.. ...-+|-+.++..-.-.+|-.
T Consensus 263 ~N-n~~YD~fv~v~rcp~P~~DW~ 285 (303)
T PHA03398 263 SN-NYSYDYFVNVKRCPEPVNDWD 285 (303)
T ss_pred cc-CccceeEEEeeeCCCCcHHHH
Confidence 54 457788888887766555543
No 21
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=97.93 E-value=2.9e-06 Score=80.21 Aligned_cols=94 Identities=14% Similarity=0.219 Sum_probs=68.5
Q ss_pred EeeCccHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeeccee---e----------eCCccccccc
Q 012169 327 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCI---F----------SDGTYTKDLT 392 (469)
Q Consensus 327 V~lRPgL~eFLe~Lsk-~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~---~----------~~g~yiKDLs 392 (469)
+..+||+.+||+.+.+ .+.++|.|++...++..+++.+.-.. +|...+.-+.-. . ....+.+-++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 162 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDA-AFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLR 162 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc-eEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHH
Confidence 5689999999999995 69999999999999999999987664 665544321111 0 0112334445
Q ss_pred ccCCCCCcEEEEECCchhhccCCCceeee
Q 012169 393 VLGVDLAKVAIIDNSPQVFRLQVNNGIPI 421 (469)
Q Consensus 393 ~LGrDLskvIIIDDsp~s~~~qpeNgIpI 421 (469)
.+|.+++++++|+|++.-.......|+.+
T Consensus 163 ~~~~~~~~~i~iGDs~~Di~aa~~ag~~i 191 (219)
T TIGR00338 163 KEGISPENTVAVGDGANDLSMIKAAGLGI 191 (219)
T ss_pred HcCCCHHHEEEEECCHHHHHHHHhCCCeE
Confidence 67889999999999987665555566766
No 22
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=97.89 E-value=1.6e-05 Score=73.85 Aligned_cols=115 Identities=15% Similarity=0.173 Sum_probs=76.6
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcH-------------
Q 012169 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQS------------- 354 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~------------- 354 (469)
+.|.||+||||+-.. .|. ...-.+.+.||+.++|++|. +.|.++|.|++..
T Consensus 2 ~~~~~D~Dgtl~~~~-------~~~--------~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~ 66 (176)
T TIGR00213 2 KAIFLDRDGTINIDH-------GYV--------HEIDNFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQ 66 (176)
T ss_pred CEEEEeCCCCEeCCC-------CCC--------CCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHH
Confidence 578999999998321 110 01112456799999999998 5699999999885
Q ss_pred --HHHHHHHHHhCCCCCceeEEEeec-----------ceee---eCCcccccccccCCCCCcEEEEECCchhhccCCCce
Q 012169 355 --IYAAQLLDILDPDGKLISRRVYRE-----------SCIF---SDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNG 418 (469)
Q Consensus 355 --~YA~~VLd~LDP~~klf~~rL~Re-----------~C~~---~~g~yiKDLs~LGrDLskvIIIDDsp~s~~~qpeNg 418 (469)
.|...++..+... |...++.. .|.. ..+.|.+-++++|.+++++++|+|++.-......+|
T Consensus 67 ~~~~~~~~l~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG 143 (176)
T TIGR00213 67 LTEWMDWSLAERDVD---LDGIYYCPHHPEGVEEFRQVCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAK 143 (176)
T ss_pred HHHHHHHHHHHcCCC---ccEEEECCCCCcccccccCCCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCC
Confidence 3444555544332 44444322 2221 123566777888999999999999998776666677
Q ss_pred eee
Q 012169 419 IPI 421 (469)
Q Consensus 419 IpI 421 (469)
+..
T Consensus 144 ~~~ 146 (176)
T TIGR00213 144 VKT 146 (176)
T ss_pred CcE
Confidence 754
No 23
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=97.84 E-value=1.2e-05 Score=72.59 Aligned_cols=117 Identities=20% Similarity=0.246 Sum_probs=77.0
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcH-------------
Q 012169 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQS------------- 354 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~------------- 354 (469)
++|+||+||||+......... ..-.+...||+.++|++|. +.|.++|.|++.+
T Consensus 1 ~~~~~d~dgtl~~~~~~~~~~-------------~~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~ 67 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSDYPR-------------SLDDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRA 67 (147)
T ss_pred CeEEEeCCCceeccCCcccCC-------------CHHHeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHH
Confidence 378999999999875321100 0111357899999999998 6699999999874
Q ss_pred --HHHHHHHHHhCCCCCceeEEEee-----cc--ee-eeCCcccccccccCCCCCcEEEEECCchhhccCCCceeee
Q 012169 355 --IYAAQLLDILDPDGKLISRRVYR-----ES--CI-FSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPI 421 (469)
Q Consensus 355 --~YA~~VLd~LDP~~klf~~rL~R-----e~--C~-~~~g~yiKDLs~LGrDLskvIIIDDsp~s~~~qpeNgIpI 421 (469)
.++..+++.++.. +...++. +. +. -....|.+-+..+|.+++++++|.|++.-.......||..
T Consensus 68 ~~~~~~~~l~~~~l~---~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~ 141 (147)
T TIGR01656 68 PNGRVLELLRQLGVA---VDGVLFCPHHPADNCSCRKPKPGLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAA 141 (147)
T ss_pred HHHHHHHHHHhCCCc---eeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCE
Confidence 5667777777653 2122221 11 11 1123455566778999999999999987665555556543
No 24
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=97.84 E-value=3.7e-06 Score=81.37 Aligned_cols=99 Identities=17% Similarity=0.209 Sum_probs=85.2
Q ss_pred EeeCccHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeee---CCcccccccccCCCCCcEE
Q 012169 327 VKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVA 402 (469)
Q Consensus 327 V~lRPgL~eFLe~Lsk~-YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~---~g~yiKDLs~LGrDLskvI 402 (469)
+...||+.+||+.|.+. .-+++-|++.+..+..+++.+...+ +|..++++++.... +..|.+-..+||.+++++|
T Consensus 85 ~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~-~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~Cv 163 (221)
T COG0637 85 LKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLD-YFDVIVTADDVARGKPAPDIYLLAAERLGVDPEECV 163 (221)
T ss_pred CCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChh-hcchhccHHHHhcCCCCCHHHHHHHHHcCCChHHeE
Confidence 78899999999999966 9999999999999999999998886 89999987776544 3468899999999999999
Q ss_pred EEECCchhhccCCCceeeeccccC
Q 012169 403 IIDNSPQVFRLQVNNGIPIESWFD 426 (469)
Q Consensus 403 IIDDsp~s~~~qpeNgIpI~~w~d 426 (469)
+|+|++.-......-|+.+..+.+
T Consensus 164 viEDs~~Gi~Aa~aAGm~vv~v~~ 187 (221)
T COG0637 164 VVEDSPAGIQAAKAAGMRVVGVPA 187 (221)
T ss_pred EEecchhHHHHHHHCCCEEEEecC
Confidence 999999877666667777777765
No 25
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.80 E-value=3.5e-05 Score=78.45 Aligned_cols=108 Identities=17% Similarity=0.121 Sum_probs=74.9
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeceE-EEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHH--
Q 012169 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTV-YVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDI-- 363 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~v-yV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~-- 363 (469)
+++||+|||+||+.-..-.. ...++ +....|++.++|+.+. +.+.+.|.|...+..|..+++.
T Consensus 3 ~k~~v~DlDnTlw~gv~~e~-------------g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~ 69 (320)
T TIGR01686 3 LKVLVLDLDNTLWGGVLGED-------------GIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRK 69 (320)
T ss_pred eEEEEEcCCCCCCCCEEccC-------------CccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCc
Confidence 67999999999976431110 00111 1224689999999998 6699999999999999999998
Q ss_pred --hCCCCCceeEEEeecceeeeCCcccccccccCCCCCcEEEEECCchhh
Q 012169 364 --LDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVF 411 (469)
Q Consensus 364 --LDP~~klf~~rL~Re~C~~~~g~yiKDLs~LGrDLskvIIIDDsp~s~ 411 (469)
+.... +|...... ..-....+.+-+..+|.+++.+|+|||++.-.
T Consensus 70 ~~~~~~~-~f~~~~~~--~~pk~~~i~~~~~~l~i~~~~~vfidD~~~d~ 116 (320)
T TIGR01686 70 DFILQAE-DFDARSIN--WGPKSESLRKIAKKLNLGTDSFLFIDDNPAER 116 (320)
T ss_pred cccCcHH-HeeEEEEe--cCchHHHHHHHHHHhCCCcCcEEEECCCHHHH
Confidence 55443 55443221 01112244555677899999999999999654
No 26
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=97.77 E-value=7.2e-05 Score=70.59 Aligned_cols=114 Identities=16% Similarity=0.209 Sum_probs=63.0
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecce------eceEEEeeCccHHHHHHHhh-cceEEEEEcC-CcHHHHHH
Q 012169 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMK------EHTVYVKQRPHLKTFLERVA-EMFEVVIFTA-SQSIYAAQ 359 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~------~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTA-s~~~YA~~ 359 (469)
++++|||||.||...-.... ..-|+..... ..+.-|.+-|++.+.|+.+. +..+|++.|. ..++.|.+
T Consensus 3 PklvvFDLD~TlW~~~~~~~----~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~ 78 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTH----VGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARE 78 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTS----S-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHH
T ss_pred CcEEEEcCcCCCCchhHhhc----cCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHH
Confidence 46899999999976542222 2222222222 23456899999999999999 5799999994 56889999
Q ss_pred HHHHhCCC-----C----CceeEEEeecceeeeCCcc---cccc-cccCCCCCcEEEEECCchhh
Q 012169 360 LLDILDPD-----G----KLISRRVYRESCIFSDGTY---TKDL-TVLGVDLAKVAIIDNSPQVF 411 (469)
Q Consensus 360 VLd~LDP~-----~----klf~~rL~Re~C~~~~g~y---iKDL-s~LGrDLskvIIIDDsp~s~ 411 (469)
+|+.|... + .+|.+. ....|.- .+.| +..|.+.+.++++||.....
T Consensus 79 ~L~~l~i~~~~~~~~~~~~~F~~~------eI~~gsK~~Hf~~i~~~tgI~y~eMlFFDDe~~N~ 137 (169)
T PF12689_consen 79 LLKLLEIDDADGDGVPLIEYFDYL------EIYPGSKTTHFRRIHRKTGIPYEEMLFFDDESRNI 137 (169)
T ss_dssp HHHHTT-C----------CCECEE------EESSS-HHHHHHHHHHHH---GGGEEEEES-HHHH
T ss_pred HHHhcCCCccccccccchhhcchh------heecCchHHHHHHHHHhcCCChhHEEEecCchhcc
Confidence 99999876 0 134321 1223322 2333 25689999999999998654
No 27
>PHA02597 30.2 hypothetical protein; Provisional
Probab=97.75 E-value=4.6e-06 Score=77.88 Aligned_cols=96 Identities=13% Similarity=0.113 Sum_probs=67.4
Q ss_pred EeeCccHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHhCCCC---CceeEEEeecceeeeCCcccccccccCCCCCcEEE
Q 012169 327 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDG---KLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAI 403 (469)
Q Consensus 327 V~lRPgL~eFLe~Lsk~YEIVIfTAs~~~YA~~VLd~LDP~~---klf~~rL~Re~C~~~~g~yiKDLs~LGrDLskvII 403 (469)
+...||+.++|++|.+.+.+++-|++.......+++.+...+ .+|+..+..+........|.+-++.+| ++.+|+
T Consensus 73 ~~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~~~~kp~~~~~a~~~~~--~~~~v~ 150 (197)
T PHA02597 73 LSAYDDALDVINKLKEDYDFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGHDESKEKLFIKAKEKYG--DRVVCF 150 (197)
T ss_pred ccCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEeccCcccHHHHHHHHHHhC--CCcEEE
Confidence 668999999999999778777777776655555666654332 245666665554322334555666778 778999
Q ss_pred EECCchhhccCCCc--eeeeccc
Q 012169 404 IDNSPQVFRLQVNN--GIPIESW 424 (469)
Q Consensus 404 IDDsp~s~~~qpeN--gIpI~~w 424 (469)
|||++........+ ||+..-+
T Consensus 151 vgDs~~di~aA~~a~~Gi~~i~~ 173 (197)
T PHA02597 151 VDDLAHNLDAAHEALSQLPVIHM 173 (197)
T ss_pred eCCCHHHHHHHHHHHcCCcEEEe
Confidence 99999988777777 8876654
No 28
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.75 E-value=4.5e-05 Score=70.80 Aligned_cols=123 Identities=16% Similarity=0.154 Sum_probs=86.2
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhc-ceEEEEEcCC---------------
Q 012169 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTAS--------------- 352 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk-~YEIVIfTAs--------------- 352 (469)
+.|+||.||||++.... .| . ....-.+..-||+.++|++|.+ .|.++|.|+.
T Consensus 2 ~~~~~d~dg~l~~~~~~-----~~--~-----~~~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~ 69 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPS-----DF--Q-----VDALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDG 69 (161)
T ss_pred CEEEEeCCCCccccCCC-----cc--c-----cCCHHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHH
Confidence 57999999999985311 01 0 0111136778999999999994 6999999996
Q ss_pred cHHHHHHHHHHhCCCCCceeEEEee-----cceeeeC---CcccccccccCCCCCcEEEEECCchhhccCCCceeeeccc
Q 012169 353 QSIYAAQLLDILDPDGKLISRRVYR-----ESCIFSD---GTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIESW 424 (469)
Q Consensus 353 ~~~YA~~VLd~LDP~~klf~~rL~R-----e~C~~~~---g~yiKDLs~LGrDLskvIIIDDsp~s~~~qpeNgIpI~~w 424 (469)
...++..+++.++.. |...++. +.+.... +.+..-++.+|.+++++++|.|+..-......+|+....+
T Consensus 70 ~~~~~~~~l~~~gl~---fd~ii~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~ 146 (161)
T TIGR01261 70 PHNLMLQIFRSQGII---FDDVLICPHFPDDNCDCRKPKIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQY 146 (161)
T ss_pred HHHHHHHHHHHCCCc---eeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEE
Confidence 466888888888774 6666553 4443322 2344555667889999999999987666666778776655
Q ss_pred cC
Q 012169 425 FD 426 (469)
Q Consensus 425 ~d 426 (469)
..
T Consensus 147 ~~ 148 (161)
T TIGR01261 147 DE 148 (161)
T ss_pred Ch
Confidence 43
No 29
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=97.73 E-value=5.6e-05 Score=70.25 Aligned_cols=116 Identities=15% Similarity=0.098 Sum_probs=76.5
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhc-ceEEEEEcCCcH------------
Q 012169 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQS------------ 354 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk-~YEIVIfTAs~~------------ 354 (469)
.+.|+||+||||+-.... | ..... .+...||+.++|++|++ .|.++|.|++..
T Consensus 3 ~~~~~~d~~~t~~~~~~~------~------~~~~~--~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~ 68 (181)
T PRK08942 3 MKAIFLDRDGVINVDSDG------Y------VKSPD--EWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLN 68 (181)
T ss_pred ccEEEEECCCCcccCCcc------c------cCCHH--HeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHH
Confidence 468999999998654210 1 11111 24578999999999995 599999998863
Q ss_pred ---HHHHHHHHHhCCCCCceeEEEeecce-----eee---CCcccccccccCCCCCcEEEEECCchhhccCCCceee
Q 012169 355 ---IYAAQLLDILDPDGKLISRRVYRESC-----IFS---DGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIP 420 (469)
Q Consensus 355 ---~YA~~VLd~LDP~~klf~~rL~Re~C-----~~~---~g~yiKDLs~LGrDLskvIIIDDsp~s~~~qpeNgIp 420 (469)
.+...+++.++- +|...++...+ ... ...|.+-+..+|.+++++++|.|++.-.......|+.
T Consensus 69 ~~~~~~~~~l~~~g~---~f~~i~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~ 142 (181)
T PRK08942 69 ALHEKMDWSLADRGG---RLDGIYYCPHHPEDGCDCRKPKPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVT 142 (181)
T ss_pred HHHHHHHHHHHHcCC---ccceEEECCCCCCCCCcCCCCCHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCe
Confidence 334445554432 35555553321 111 2356677778899999999999999766555556654
No 30
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.68 E-value=3.1e-05 Score=77.03 Aligned_cols=128 Identities=12% Similarity=0.087 Sum_probs=91.8
Q ss_pred CCceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHh
Q 012169 286 RKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDIL 364 (469)
Q Consensus 286 ~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~L 364 (469)
.++..+++|+||||....... ..++. ...-....|++.++|+++. +.+.++|.|+.....++.+++.|
T Consensus 156 ~~~~~~~~D~dgtl~~~~~~~--~~~~~---------~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l 224 (300)
T PHA02530 156 GLPKAVIFDIDGTLAKMGGRS--PYDWT---------KVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWL 224 (300)
T ss_pred CCCCEEEEECCCcCcCCCCCC--ccchh---------hcccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHH
Confidence 345789999999998754211 11111 0112456899999999998 45999999999999999999999
Q ss_pred CCCCCceeEEEeecc-------eeeeC---CcccccccccCC-CCCcEEEEECCchhhccCCCceeeeccc
Q 012169 365 DPDGKLISRRVYRES-------CIFSD---GTYTKDLTVLGV-DLAKVAIIDNSPQVFRLQVNNGIPIESW 424 (469)
Q Consensus 365 DP~~klf~~rL~Re~-------C~~~~---g~yiKDLs~LGr-DLskvIIIDDsp~s~~~qpeNgIpI~~w 424 (469)
+..+.+|...+..+. ..... ..+.+.|..++. +++.++.|+|++........+||++-..
T Consensus 225 ~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v 295 (300)
T PHA02530 225 RQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGLECWQV 295 (300)
T ss_pred HHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCCeEEEe
Confidence 988767766655542 11111 123455666677 6799999999999888888889886543
No 31
>PLN02940 riboflavin kinase
Probab=97.58 E-value=1.1e-05 Score=84.37 Aligned_cols=96 Identities=10% Similarity=0.091 Sum_probs=76.5
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHH-HhCCCCCceeEEEeecceeeeC---CcccccccccCCCCCcE
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLD-ILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKV 401 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd-~LDP~~klf~~rL~Re~C~~~~---g~yiKDLs~LGrDLskv 401 (469)
+...||+.++|++|. +.+.++|-|++.+.++..+++ ..+-. .+|+.++..+++...+ ..|.+-++.+|..++++
T Consensus 92 ~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~-~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~~ 170 (382)
T PLN02940 92 IKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWK-ESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSNC 170 (382)
T ss_pred CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChH-hhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChhHE
Confidence 467899999999997 559999999999999999887 55544 4899998888765332 35677788899999999
Q ss_pred EEEECCchhhccCCCceeeecc
Q 012169 402 AIIDNSPQVFRLQVNNGIPIES 423 (469)
Q Consensus 402 IIIDDsp~s~~~qpeNgIpI~~ 423 (469)
++|+|++.-.......|+....
T Consensus 171 l~VGDs~~Di~aA~~aGi~~I~ 192 (382)
T PLN02940 171 LVIEDSLPGVMAGKAAGMEVIA 192 (382)
T ss_pred EEEeCCHHHHHHHHHcCCEEEE
Confidence 9999999877666666766443
No 32
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=97.57 E-value=2.1e-05 Score=70.19 Aligned_cols=82 Identities=12% Similarity=0.058 Sum_probs=63.2
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeee--CCcccccccccCCCCCcEEE
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS--DGTYTKDLTVLGVDLAKVAI 403 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~--~g~yiKDLs~LGrDLskvII 403 (469)
....||+.++|+.+. +.+.++|.|++.+..+..+++.+ . ..+|...+..++.... ...|.+-++.+|.++ ++++
T Consensus 63 ~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l-~~~f~~i~~~~~~~~Kp~~~~~~~~~~~~~~~~-~~l~ 139 (154)
T TIGR01549 63 EAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-L-GDYFDLILGSDEFGAKPEPEIFLAALESLGLPP-EVLH 139 (154)
T ss_pred heeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-H-HhcCcEEEecCCCCCCcCHHHHHHHHHHcCCCC-CEEE
Confidence 445699999999996 66999999999999999999996 2 3467777766654311 224566677888888 9999
Q ss_pred EECCchhh
Q 012169 404 IDNSPQVF 411 (469)
Q Consensus 404 IDDsp~s~ 411 (469)
|.|++.-.
T Consensus 140 iGDs~~Di 147 (154)
T TIGR01549 140 VGDNLNDI 147 (154)
T ss_pred EeCCHHHH
Confidence 99997533
No 33
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=97.41 E-value=0.00036 Score=65.01 Aligned_cols=107 Identities=18% Similarity=0.267 Sum_probs=68.0
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHH-----------
Q 012169 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSI----------- 355 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~----------- 355 (469)
+++++||+||||+-...... | ......| ..+-||+.+.|++|. +.|.++|.|++...
T Consensus 13 ~k~~~~D~Dgtl~~~~~~~~----~------~~~~~~~-~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~ 81 (166)
T TIGR01664 13 SKVAAFDLDGTLITTRSGKV----F------PTSASDW-RFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFK 81 (166)
T ss_pred CcEEEEeCCCceEecCCCCc----c------cCChHHe-EEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHH
Confidence 46899999999996531100 0 0001111 124599999999997 67999999998763
Q ss_pred -HHHHHHHHhCCCCCceeEEEeecceeee---CCcccccccccC--CCCCcEEEEECCc
Q 012169 356 -YAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLG--VDLAKVAIIDNSP 408 (469)
Q Consensus 356 -YA~~VLd~LDP~~klf~~rL~Re~C~~~---~g~yiKDLs~LG--rDLskvIIIDDsp 408 (469)
++..+++.++.. +...+..+..... .+.+..-+..+| .+++++++|.|++
T Consensus 82 ~~i~~~l~~~gl~---~~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~ 137 (166)
T TIGR01664 82 NKIEAFLEKLKVP---IQVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAA 137 (166)
T ss_pred HHHHHHHHHcCCC---EEEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCC
Confidence 567778887763 2223332221111 223444456677 8899999999986
No 34
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.39 E-value=0.00015 Score=64.01 Aligned_cols=94 Identities=18% Similarity=0.316 Sum_probs=76.7
Q ss_pred EEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeeeC---CcccccccccCCCCCcE
Q 012169 326 YVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKV 401 (469)
Q Consensus 326 yV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~~---g~yiKDLs~LGrDLskv 401 (469)
.....|++.++|+.++ +.+.++|.|.+...++..+++.+... .+|...++.++....+ ..|.+-++.+|.+++++
T Consensus 75 ~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~-~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~ 153 (176)
T PF13419_consen 75 KLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD-DYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEI 153 (176)
T ss_dssp GEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG-GGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGE
T ss_pred ccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccc-cccccccccchhhhhhhHHHHHHHHHHHcCCCcceE
Confidence 5889999999999999 88999999999999999999999776 4898888876554332 35667777889999999
Q ss_pred EEEECCchhhccCCCceee
Q 012169 402 AIIDNSPQVFRLQVNNGIP 420 (469)
Q Consensus 402 IIIDDsp~s~~~qpeNgIp 420 (469)
++|||++.........|+.
T Consensus 154 ~~vgD~~~d~~~A~~~G~~ 172 (176)
T PF13419_consen 154 LFVGDSPSDVEAAKEAGIK 172 (176)
T ss_dssp EEEESSHHHHHHHHHTTSE
T ss_pred EEEeCCHHHHHHHHHcCCe
Confidence 9999999766544444543
No 35
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.37 E-value=0.00018 Score=71.18 Aligned_cols=133 Identities=12% Similarity=0.093 Sum_probs=77.2
Q ss_pred CCCceEEEEecccccccccccc-c-----CCCCceE--EEEecce---eceEEEeeCccHHHHHHHhh-cceEEEEEcCC
Q 012169 285 GRKSVTLVLDLDETLVHSTLEY-C-----DDADFTF--TVFFNMK---EHTVYVKQRPHLKTFLERVA-EMFEVVIFTAS 352 (469)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~-~-----~~~df~~--~i~~~~~---~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs 352 (469)
.++++.++|||||||++++..- . ...++.. .-.+... ...-.....|++.+||+++. +.+.++|.|+.
T Consensus 60 ~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr 139 (237)
T TIGR01672 60 GRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGR 139 (237)
T ss_pred CCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCC
Confidence 3456699999999999997410 0 0100000 0000000 00112334444999999998 56999999998
Q ss_pred ----cHHHHHHHHHHhCCCCCceeEEEeecceeeeCCcccccccccCCCCCcEEEEECCchhhccCCCceeeec
Q 012169 353 ----QSIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIE 422 (469)
Q Consensus 353 ----~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~~g~yiKDLs~LGrDLskvIIIDDsp~s~~~qpeNgIpI~ 422 (469)
.+.+++.+++.+...+ +|...+..+.... ..+-|. ..+ ....-++.|-|+..-+......||...
T Consensus 140 ~~~k~~~~a~~ll~~lGi~~-~f~~i~~~d~~~~--~Kp~~~-~~l-~~~~i~i~vGDs~~DI~aAk~AGi~~I 208 (237)
T TIGR01672 140 TPGKTDTVSKTLAKNFHIPA-MNPVIFAGDKPGQ--YQYTKT-QWI-QDKNIRIHYGDSDNDITAAKEAGARGI 208 (237)
T ss_pred CCCcCHHHHHHHHHHhCCch-heeEEECCCCCCC--CCCCHH-HHH-HhCCCeEEEeCCHHHHHHHHHCCCCEE
Confidence 7789999999998765 6755544443221 111121 112 122337889888876655555666533
No 36
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=97.31 E-value=0.00023 Score=64.91 Aligned_cols=86 Identities=10% Similarity=0.161 Sum_probs=59.9
Q ss_pred EeeCccHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeeeC-----------------Cccc
Q 012169 327 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD-----------------GTYT 388 (469)
Q Consensus 327 V~lRPgL~eFLe~Lsk-~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~~-----------------g~yi 388 (469)
+.++|++.++|+++.+ .+.++|.|++...+++.+++.++-.. +|...+..+...-.. ....
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 149 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKD-VFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCC 149 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChh-heeEEeccCceECCCCcEEEecCCCCccCcCCCCCC
Confidence 6799999999999985 59999999999999999999987654 676666432211100 1112
Q ss_pred c--cccccCCC-CCcEEEEECCchhhcc
Q 012169 389 K--DLTVLGVD-LAKVAIIDNSPQVFRL 413 (469)
Q Consensus 389 K--DLs~LGrD-LskvIIIDDsp~s~~~ 413 (469)
| -+..+... .+++|+|+|+..-+..
T Consensus 150 K~~~~~~~~~~~~~~~i~iGD~~~D~~a 177 (188)
T TIGR01489 150 KGKVIHKLSEPKYQHIIYIGDGVTDVCP 177 (188)
T ss_pred HHHHHHHHHhhcCceEEEECCCcchhch
Confidence 3 22233334 7889999999876543
No 37
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=97.23 E-value=0.0003 Score=63.78 Aligned_cols=92 Identities=20% Similarity=0.254 Sum_probs=70.8
Q ss_pred EeeCccHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeeeC---CcccccccccCCCCCcEE
Q 012169 327 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 402 (469)
Q Consensus 327 V~lRPgL~eFLe~Lsk-~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~~---g~yiKDLs~LGrDLskvI 402 (469)
+..+||+.+||+++.+ .+.++|.|++...+ ..++..++..+ +|...++.+.....+ ..|.+-++.+|.++++++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~-~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 161 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRD-LFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECL 161 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHH-HCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEE
Confidence 5678999999999984 69999999999999 76666676664 788888765543322 356666778899999999
Q ss_pred EEECCchhhccCCCceee
Q 012169 403 IIDNSPQVFRLQVNNGIP 420 (469)
Q Consensus 403 IIDDsp~s~~~qpeNgIp 420 (469)
+|+|++.........|+.
T Consensus 162 ~vgD~~~di~aA~~~G~~ 179 (183)
T TIGR01509 162 FVDDSPAGIEAAKAAGMH 179 (183)
T ss_pred EEcCCHHHHHHHHHcCCE
Confidence 999999766555555554
No 38
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=97.23 E-value=8.8e-05 Score=69.33 Aligned_cols=94 Identities=18% Similarity=0.164 Sum_probs=62.3
Q ss_pred EeeCccHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEee-cceeee-----CC-cccccccccCCCCC
Q 012169 327 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYR-ESCIFS-----DG-TYTKDLTVLGVDLA 399 (469)
Q Consensus 327 V~lRPgL~eFLe~Lsk~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~R-e~C~~~-----~g-~yiKDLs~LGrDLs 399 (469)
+..+||+.+||+.+.+.+.++|.|++...+++.+++.++... +|...+.- +.-... .+ ....-+..++....
T Consensus 67 ~~~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~gl~~-~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~~ 145 (205)
T PRK13582 67 LDPLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLGWPT-LFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLGY 145 (205)
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcCCch-hhcceEEECCCCeEECccccccchHHHHHHHHHHhCC
Confidence 567899999999999669999999999999999999988654 66554432 111000 01 11111223445557
Q ss_pred cEEEEECCchhhccCCCceeee
Q 012169 400 KVAIIDNSPQVFRLQVNNGIPI 421 (469)
Q Consensus 400 kvIIIDDsp~s~~~qpeNgIpI 421 (469)
+++.|-|+..-.......|+.+
T Consensus 146 ~~v~iGDs~~D~~~~~aa~~~v 167 (205)
T PRK13582 146 RVIAAGDSYNDTTMLGEADAGI 167 (205)
T ss_pred eEEEEeCCHHHHHHHHhCCCCE
Confidence 8999999997654443444444
No 39
>PRK06769 hypothetical protein; Validated
Probab=97.22 E-value=0.00028 Score=65.78 Aligned_cols=117 Identities=17% Similarity=0.188 Sum_probs=72.2
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHH-----HHHHHH
Q 012169 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIY-----AAQLLD 362 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~Y-----A~~VLd 362 (469)
..|+||+||||.-- .. + .+.-.+..-||+.++|++|. +.|.++|.|++.... ......
T Consensus 5 ~~~~~d~d~~~~~~--~~-----~---------~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~ 68 (173)
T PRK06769 5 QAIFIDRDGTIGGD--TT-----I---------HYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQ 68 (173)
T ss_pred cEEEEeCCCcccCC--CC-----C---------CCHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHH
Confidence 47999999999421 00 0 00012456799999999998 569999999886421 012233
Q ss_pred HhCCCCCceeEEEe-----ecceee---eCCcccccccccCCCCCcEEEEECCchhhccCCCceeeecc
Q 012169 363 ILDPDGKLISRRVY-----RESCIF---SDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIES 423 (469)
Q Consensus 363 ~LDP~~klf~~rL~-----Re~C~~---~~g~yiKDLs~LGrDLskvIIIDDsp~s~~~qpeNgIpI~~ 423 (469)
.+...+ |...+. .+.... ..+.|.+-++++|.+++++++|+|++.-.......|+...-
T Consensus 69 ~l~~~g--~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~ 135 (173)
T PRK06769 69 ELKGFG--FDDIYLCPHKHGDGCECRKPSTGMLLQAAEKHGLDLTQCAVIGDRWTDIVAAAKVNATTIL 135 (173)
T ss_pred HHHhCC--cCEEEECcCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCCeEEE
Confidence 333333 323332 111111 12356777888899999999999999766555556665443
No 40
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.22 E-value=0.00052 Score=63.80 Aligned_cols=110 Identities=16% Similarity=0.121 Sum_probs=76.0
Q ss_pred CCceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhc-ceEEEEEcCCc-HHHHHHHHHH
Q 012169 286 RKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQ-SIYAAQLLDI 363 (469)
Q Consensus 286 ~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk-~YEIVIfTAs~-~~YA~~VLd~ 363 (469)
.+-..+|+|+||||..... ....|++.++|++|.+ .+.++|.|++. ...+..+++.
T Consensus 23 ~~v~~vv~D~Dgtl~~~~~----------------------~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~ 80 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPDH----------------------NEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKA 80 (170)
T ss_pred CCCCEEEEecCCccccCCC----------------------CCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHH
Confidence 4456899999999986421 1346999999999985 49999999998 6788888777
Q ss_pred hCCCCCceeEEEeecceeeeCCcccccccccCCCCCcEEEEECCch-hhccCCCceeeeccc
Q 012169 364 LDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQ-VFRLQVNNGIPIESW 424 (469)
Q Consensus 364 LDP~~klf~~rL~Re~C~~~~g~yiKDLs~LGrDLskvIIIDDsp~-s~~~qpeNgIpI~~w 424 (469)
++... ++ ....-....|.+-++.+|.+++++++|+|+.. -......+|+...-+
T Consensus 81 ~gl~~------~~-~~~KP~p~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~~i~v 135 (170)
T TIGR01668 81 LGIPV------LP-HAVKPPGCAFRRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSYTILV 135 (170)
T ss_pred cCCEE------Ec-CCCCCChHHHHHHHHHcCCCHHHEEEECCcchHHHHHHHHcCCeEEEE
Confidence 65321 11 11112233455667778999999999999983 454444556554433
No 41
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=97.20 E-value=0.00024 Score=69.78 Aligned_cols=90 Identities=22% Similarity=0.330 Sum_probs=72.5
Q ss_pred EeeCccHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecc---------eeeeCCcccccccccCCC
Q 012169 327 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRES---------CIFSDGTYTKDLTVLGVD 397 (469)
Q Consensus 327 V~lRPgL~eFLe~Lsk~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~---------C~~~~g~yiKDLs~LGrD 397 (469)
++.-|-|++||-.|.+.+ .++||.+.+.-|..+|+.|.... .|...++.+. |.-....|.|-.+..|.+
T Consensus 99 LkPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LGieD-cFegii~~e~~np~~~~~vcKP~~~afE~a~k~agi~ 176 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLGIED-CFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAGID 176 (244)
T ss_pred cCCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhChHH-hccceeEeeccCCCCCceeecCCHHHHHHHHHHhCCC
Confidence 677788999999999887 89999999999999999999886 7888887442 333345677777778887
Q ss_pred -CCcEEEEECCchhhccCCCce
Q 012169 398 -LAKVAIIDNSPQVFRLQVNNG 418 (469)
Q Consensus 398 -LskvIIIDDsp~s~~~qpeNg 418 (469)
++|++++||+........+=|
T Consensus 177 ~p~~t~FfDDS~~NI~~ak~vG 198 (244)
T KOG3109|consen 177 SPRNTYFFDDSERNIQTAKEVG 198 (244)
T ss_pred CcCceEEEcCchhhHHHHHhcc
Confidence 999999999998775544443
No 42
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.15 E-value=0.00048 Score=68.58 Aligned_cols=98 Identities=11% Similarity=0.177 Sum_probs=81.3
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeeeC---CcccccccccCCCCCcEE
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 402 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~~---g~yiKDLs~LGrDLskvI 402 (469)
+...||+.++|++|. +.|.++|.|++.+.++..+++.++-.+ +|...+..+.+...+ ..|.+-+.++|.++++++
T Consensus 108 ~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~l 186 (260)
T PLN03243 108 YRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEG-FFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERCI 186 (260)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHh-hCcEEEecccCCCCCCCHHHHHHHHHHhCCChHHeE
Confidence 567899999999998 569999999999999999999998665 899988877664332 357777888999999999
Q ss_pred EEECCchhhccCCCceeeecccc
Q 012169 403 IIDNSPQVFRLQVNNGIPIESWF 425 (469)
Q Consensus 403 IIDDsp~s~~~qpeNgIpI~~w~ 425 (469)
+|+|++.-.......|+......
T Consensus 187 ~IgDs~~Di~aA~~aG~~~i~v~ 209 (260)
T PLN03243 187 VFGNSNSSVEAAHDGCMKCVAVA 209 (260)
T ss_pred EEcCCHHHHHHHHHcCCEEEEEe
Confidence 99999988877777787665443
No 43
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=97.14 E-value=0.00058 Score=66.83 Aligned_cols=97 Identities=16% Similarity=0.251 Sum_probs=80.7
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeee---CCcccccccccCCCCCcEE
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVA 402 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~---~g~yiKDLs~LGrDLskvI 402 (469)
+...||+.++|++|. +.+.++|-|++.+.+++.+++.++..+ +|+..+..+.+... ...|.+-+.++|.++++++
T Consensus 107 ~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~l 185 (248)
T PLN02770 107 LKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSD-FFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHTF 185 (248)
T ss_pred CCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChh-hCcEEEecCcCCCCCCChHHHHHHHHHhCCChhHEE
Confidence 667899999999997 669999999999999999999998775 89888887765432 2356778888999999999
Q ss_pred EEECCchhhccCCCceeeeccc
Q 012169 403 IIDNSPQVFRLQVNNGIPIESW 424 (469)
Q Consensus 403 IIDDsp~s~~~qpeNgIpI~~w 424 (469)
+|+|++.-......+|++....
T Consensus 186 ~vgDs~~Di~aA~~aGi~~i~v 207 (248)
T PLN02770 186 VFEDSVSGIKAGVAAGMPVVGL 207 (248)
T ss_pred EEcCCHHHHHHHHHCCCEEEEE
Confidence 9999998776666778876544
No 44
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=97.13 E-value=0.0016 Score=68.01 Aligned_cols=121 Identities=17% Similarity=0.189 Sum_probs=80.5
Q ss_pred CceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhc-ceEEEEEcCC-------------
Q 012169 287 KSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTAS------------- 352 (469)
Q Consensus 287 kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk-~YEIVIfTAs------------- 352 (469)
+++.|+||-||||+........ ....-.+...|++.++|++|.+ .|.++|.|+.
T Consensus 1 ~~k~l~lDrDgtl~~~~~~~y~------------~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l 68 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPTDFQ------------VDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDF 68 (354)
T ss_pred CCcEEEEeCCCCccCCCCcccc------------ccCcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHH
Confidence 4679999999999987421110 1112237789999999999984 6999999995
Q ss_pred --cHHHHHHHHHHhCCCCCceeEEEee-----cceeeeC---CcccccccccCCCCCcEEEEECCchhhccCCCceeeec
Q 012169 353 --QSIYAAQLLDILDPDGKLISRRVYR-----ESCIFSD---GTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIE 422 (469)
Q Consensus 353 --~~~YA~~VLd~LDP~~klf~~rL~R-----e~C~~~~---g~yiKDLs~LGrDLskvIIIDDsp~s~~~qpeNgIpI~ 422 (469)
...++..+++.+.. +|...++. +.|.... +.+..-+..++.+++++++|-|+..-......+|+..-
T Consensus 69 ~~~~~~i~~iL~~~gl---~fd~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I 145 (354)
T PRK05446 69 DPPHNLMMQIFESQGI---KFDEVLICPHFPEDNCSCRKPKTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGI 145 (354)
T ss_pred hhHHHHHHHHHHHcCC---ceeeEEEeCCcCcccCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEE
Confidence 24556666666544 35555554 3443221 12333344568899999999999866655566776644
No 45
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.12 E-value=0.0015 Score=66.32 Aligned_cols=71 Identities=20% Similarity=0.274 Sum_probs=57.9
Q ss_pred CCceEEEEecccccccccccccCCCCceEEEEecceeceEEEee-CccHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHH
Q 012169 286 RKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQ-RPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDI 363 (469)
Q Consensus 286 ~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~l-RPgL~eFLe~Lsk~-YEIVIfTAs~~~YA~~VLd~ 363 (469)
.++-.+|+|||.|||-.... ++. =|.+.+-|..+.+. .-+++||.|.+++|..-++.
T Consensus 120 ~~phVIVfDlD~TLItd~~~---------------------v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~ 178 (297)
T PF05152_consen 120 EPPHVIVFDLDSTLITDEGD---------------------VRIRDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKE 178 (297)
T ss_pred CCCcEEEEECCCcccccCCc---------------------cccCChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHH
Confidence 44559999999999976422 222 38889999999966 59999999999999999999
Q ss_pred hCCCCCceeEEEeec
Q 012169 364 LDPDGKLISRRVYRE 378 (469)
Q Consensus 364 LDP~~klf~~rL~Re 378 (469)
+...+ +|...|.+.
T Consensus 179 ~~L~~-~Fd~ii~~G 192 (297)
T PF05152_consen 179 LKLEG-YFDIIICGG 192 (297)
T ss_pred hCCcc-ccEEEEeCC
Confidence 99885 898888754
No 46
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.11 E-value=0.00046 Score=65.10 Aligned_cols=95 Identities=15% Similarity=0.176 Sum_probs=75.2
Q ss_pred EeeCccHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeee---CCcccccccccCCCCCcEE
Q 012169 327 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVA 402 (469)
Q Consensus 327 V~lRPgL~eFLe~Lsk-~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~---~g~yiKDLs~LGrDLskvI 402 (469)
+.+.||+.+||+++.+ .+.++|.|++...++...++.++... +|..++..+..... ...|.+-++++|.+++++|
T Consensus 93 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 171 (221)
T TIGR02253 93 LRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRD-FFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAV 171 (221)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHH-hccEEEEeccCCCCCCCHHHHHHHHHHcCCChhhEE
Confidence 6789999999999985 59999999999999999999998765 88888877655432 2356777888999999999
Q ss_pred EEECCc-hhhccCCCceeeec
Q 012169 403 IIDNSP-QVFRLQVNNGIPIE 422 (469)
Q Consensus 403 IIDDsp-~s~~~qpeNgIpI~ 422 (469)
+|.|++ .-.......|+...
T Consensus 172 ~igDs~~~di~~A~~aG~~~i 192 (221)
T TIGR02253 172 MVGDRLDKDIKGAKNLGMKTV 192 (221)
T ss_pred EECCChHHHHHHHHHCCCEEE
Confidence 999998 44544445555543
No 47
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=97.09 E-value=0.00033 Score=64.74 Aligned_cols=92 Identities=23% Similarity=0.285 Sum_probs=73.0
Q ss_pred EeeCccHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceee-------eCCcccccccccCCCCC
Q 012169 327 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIF-------SDGTYTKDLTVLGVDLA 399 (469)
Q Consensus 327 V~lRPgL~eFLe~Lsk~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~-------~~g~yiKDLs~LGrDLs 399 (469)
+...||+.++|++|. +.++|.|++.+.++..+++.++... +|+..+..+.... .+..|.+-+..+|.+++
T Consensus 83 ~~~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~gl~~-~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~ 159 (184)
T TIGR01993 83 LKPDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRLGIED-CFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDPE 159 (184)
T ss_pred CCCCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHcCcHh-hhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCcc
Confidence 446799999999998 6899999999999999999997654 8888887655332 23356677788899999
Q ss_pred cEEEEECCchhhccCCCceeee
Q 012169 400 KVAIIDNSPQVFRLQVNNGIPI 421 (469)
Q Consensus 400 kvIIIDDsp~s~~~qpeNgIpI 421 (469)
++++|+|++.........|+..
T Consensus 160 ~~l~vgD~~~di~aA~~~G~~~ 181 (184)
T TIGR01993 160 RAIFFDDSARNIAAAKALGMKT 181 (184)
T ss_pred ceEEEeCCHHHHHHHHHcCCEE
Confidence 9999999997665555666653
No 48
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=97.07 E-value=0.00054 Score=64.37 Aligned_cols=96 Identities=15% Similarity=0.134 Sum_probs=78.0
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeee---CCcccccccccCCCCCcEE
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVA 402 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~---~g~yiKDLs~LGrDLskvI 402 (469)
+...||+.++|+++. +.+.++|.|++.+.++..+++.++..+ +|...+..+.+... ...|.+-+..+|.++++++
T Consensus 74 ~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~-~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l 152 (205)
T TIGR01454 74 VEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLP-LFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAV 152 (205)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChh-heeeEEecCcCCCCCCChHHHHHHHHHcCCChhheE
Confidence 677899999999998 569999999999999999999998875 78887776654322 2345666778899999999
Q ss_pred EEECCchhhccCCCceeeecc
Q 012169 403 IIDNSPQVFRLQVNNGIPIES 423 (469)
Q Consensus 403 IIDDsp~s~~~qpeNgIpI~~ 423 (469)
+|+|++.-+.....+|++...
T Consensus 153 ~igD~~~Di~aA~~~Gi~~i~ 173 (205)
T TIGR01454 153 MVGDAVTDLASARAAGTATVA 173 (205)
T ss_pred EEcCCHHHHHHHHHcCCeEEE
Confidence 999999777667778887543
No 49
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=97.04 E-value=0.00047 Score=66.32 Aligned_cols=95 Identities=17% Similarity=0.145 Sum_probs=72.9
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeeeC---CcccccccccCCCCCcEE
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 402 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~~---g~yiKDLs~LGrDLskvI 402 (469)
...-||+.+.|..++ +.|.+.|.|+.....++.+++.++-.. +|..++..+.....+ ..+..-+..+|.+++++|
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~-~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l 166 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLAD-YFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEAL 166 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCcc-ccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheE
Confidence 467899999999999 669999999999999999999998876 787766633322222 234455667788877999
Q ss_pred EEECCchhhccCCCceeeec
Q 012169 403 IIDNSPQVFRLQVNNGIPIE 422 (469)
Q Consensus 403 IIDDsp~s~~~qpeNgIpI~ 422 (469)
+|=|+..-.......|++..
T Consensus 167 ~VGDs~~Di~aA~~Ag~~~v 186 (220)
T COG0546 167 MVGDSLNDILAAKAAGVPAV 186 (220)
T ss_pred EECCCHHHHHHHHHcCCCEE
Confidence 99999987766666665533
No 50
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=96.99 E-value=0.0021 Score=63.69 Aligned_cols=131 Identities=11% Similarity=0.096 Sum_probs=74.8
Q ss_pred CCCceEEEEecccccccccccc-cCCCCceEE--EEecc--------eeceEEEeeCccHHHHHHHhh-cceEEEEEcC-
Q 012169 285 GRKSVTLVLDLDETLVHSTLEY-CDDADFTFT--VFFNM--------KEHTVYVKQRPHLKTFLERVA-EMFEVVIFTA- 351 (469)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~-~~~~df~~~--i~~~~--------~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTA- 351 (469)
.++++.++||+|||+++++... .....|.-. -.+.. .....+....||+.+||+++. +.++|++-|+
T Consensus 60 ~~~p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR 139 (237)
T PRK11009 60 GRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGR 139 (237)
T ss_pred CCCCcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4456799999999999975211 111111000 00000 001234555666999999995 7799999999
Q ss_pred ---CcHHHHHHHHHHhCC-CCCceeEEEeecceeeeCCcccccccccCCCCCcEEEEECCchhhccCCCceeee
Q 012169 352 ---SQSIYAAQLLDILDP-DGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPI 421 (469)
Q Consensus 352 ---s~~~YA~~VLd~LDP-~~klf~~rL~Re~C~~~~g~yiKDLs~LGrDLskvIIIDDsp~s~~~qpeNgIpI 421 (469)
....+++.+++.+.. ...+|...+..+.. ... -|. ..+. ...-+|+|-|+..-+......||..
T Consensus 140 ~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~-~K~---~K~-~~l~-~~~i~I~IGDs~~Di~aA~~AGi~~ 207 (237)
T PRK11009 140 TATKTETVSKTLADDFHIPADNMNPVIFAGDKP-GQY---TKT-QWLK-KKNIRIFYGDSDNDITAAREAGARG 207 (237)
T ss_pred CCcccHHHHHHHHHHcCCCcccceeEEEcCCCC-CCC---CHH-HHHH-hcCCeEEEcCCHHHHHHHHHcCCcE
Confidence 457799999987765 23366554444431 101 111 0111 2233888999886665554555553
No 51
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=96.98 E-value=0.00072 Score=63.54 Aligned_cols=94 Identities=14% Similarity=0.099 Sum_probs=75.5
Q ss_pred EeeCccHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeeeC---Cccccccccc-CCCCCcEE
Q 012169 327 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVL-GVDLAKVA 402 (469)
Q Consensus 327 V~lRPgL~eFLe~Lsk~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~~---g~yiKDLs~L-GrDLskvI 402 (469)
+..+||+.++|+++.+.+.++|-|++...++..+++.+.-.+ +|+..+..+.....+ ..|.+-++.+ |.+++++|
T Consensus 96 ~~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~~-~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v 174 (224)
T TIGR02254 96 HQLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKSGLFP-FFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEVL 174 (224)
T ss_pred CeeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHCCcHh-hcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchheE
Confidence 578999999999999779999999999999999999987765 788888766654332 3566778889 99999999
Q ss_pred EEECCc-hhhccCCCceeee
Q 012169 403 IIDNSP-QVFRLQVNNGIPI 421 (469)
Q Consensus 403 IIDDsp-~s~~~qpeNgIpI 421 (469)
+|+|++ .-......+|++.
T Consensus 175 ~igD~~~~di~~A~~~G~~~ 194 (224)
T TIGR02254 175 MIGDSLTADIKGGQNAGLDT 194 (224)
T ss_pred EECCCcHHHHHHHHHCCCcE
Confidence 999997 4554455566544
No 52
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=96.97 E-value=0.00079 Score=63.05 Aligned_cols=97 Identities=15% Similarity=0.128 Sum_probs=76.7
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeeeC---CcccccccccCCCCCcEE
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 402 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~~---g~yiKDLs~LGrDLskvI 402 (469)
+..+||+.++|+.+. +.+.++|.|++.+.+++.+++.++-.+ +|...+..+.....+ ..|.+-++.+|.++++++
T Consensus 84 ~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~ 162 (213)
T TIGR01449 84 TSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAK-YFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMV 162 (213)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHh-hCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHeE
Confidence 578999999999998 569999999999999999999988765 787766655432221 246677788899999999
Q ss_pred EEECCchhhccCCCceeeeccc
Q 012169 403 IIDNSPQVFRLQVNNGIPIESW 424 (469)
Q Consensus 403 IIDDsp~s~~~qpeNgIpI~~w 424 (469)
+|+|++.-+......|++....
T Consensus 163 ~igDs~~d~~aa~~aG~~~i~v 184 (213)
T TIGR01449 163 YVGDSRVDIQAARAAGCPSVLL 184 (213)
T ss_pred EeCCCHHHHHHHHHCCCeEEEE
Confidence 9999998776666677765543
No 53
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=96.95 E-value=0.00062 Score=63.51 Aligned_cols=94 Identities=15% Similarity=0.192 Sum_probs=74.7
Q ss_pred EeeCccHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeee---CCcccccccccCCCCCcEE
Q 012169 327 VKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVA 402 (469)
Q Consensus 327 V~lRPgL~eFLe~Lsk~-YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~---~g~yiKDLs~LGrDLskvI 402 (469)
+...|++.++|+++.+. |.++|.|++...++..+++.+.-. .+|+..+..++.... ...|.+-++.+|.++++++
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~-~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~ 169 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLD-DPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVL 169 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCCh-hhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEE
Confidence 45689999999999964 999999999999999999998755 378888877654332 2356667778899999999
Q ss_pred EEECCchhhccCCCceeee
Q 012169 403 IIDNSPQVFRLQVNNGIPI 421 (469)
Q Consensus 403 IIDDsp~s~~~qpeNgIpI 421 (469)
+|+|++.-.......|+..
T Consensus 170 ~vgD~~~Di~~A~~~G~~~ 188 (198)
T TIGR01428 170 FVASNPWDLGGAKKFGFKT 188 (198)
T ss_pred EEeCCHHHHHHHHHCCCcE
Confidence 9999996665555566653
No 54
>PLN02954 phosphoserine phosphatase
Probab=96.90 E-value=0.00042 Score=65.77 Aligned_cols=92 Identities=9% Similarity=0.125 Sum_probs=60.3
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCC-CceeEEEeecc-------------eeee-CCccc-c
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDG-KLISRRVYRES-------------CIFS-DGTYT-K 389 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~-klf~~rL~Re~-------------C~~~-~g~yi-K 389 (469)
..++||+.++|+++. +.+.++|-|++.+.+++.+++.++-.. .+|...+.-+. |... +...+ +
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~ 162 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQH 162 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHH
Confidence 457899999999997 569999999999999999999987652 35654433111 1000 00011 1
Q ss_pred cccccCCCCCcEEEEECCchhhccCCCceee
Q 012169 390 DLTVLGVDLAKVAIIDNSPQVFRLQVNNGIP 420 (469)
Q Consensus 390 DLs~LGrDLskvIIIDDsp~s~~~qpeNgIp 420 (469)
-+..+| .+++|.|-|++.-......+|+.
T Consensus 163 ~~~~~~--~~~~i~iGDs~~Di~aa~~~~~~ 191 (224)
T PLN02954 163 IKKKHG--YKTMVMIGDGATDLEARKPGGAD 191 (224)
T ss_pred HHHHcC--CCceEEEeCCHHHHHhhhcCCCC
Confidence 112234 46899999999877664444444
No 55
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=96.86 E-value=0.0013 Score=60.19 Aligned_cols=112 Identities=19% Similarity=0.159 Sum_probs=73.8
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCC
Q 012169 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPD 367 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~ 367 (469)
+.++||+||||+.-..... .+ ....-++.++|+. -|++|. +.+.++|.|+..+..+..+++.+...
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~----------~~-~~~~~~~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~ 68 (154)
T TIGR01670 2 RLLILDVDGVLTDGKIYYT----------NN-GEEIKAFNVRDGY--GIRCALKSGIEVAIITGRKAKLVEDRCKTLGIT 68 (154)
T ss_pred eEEEEeCceeEEcCeEEEC----------CC-CcEEEEEechhHH--HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCC
Confidence 4789999999995321100 01 1112234667776 688888 57999999999999999999998765
Q ss_pred CCceeEEEeecceeeeCCcccccccccCCCCCcEEEEECCchhhccCCCceee
Q 012169 368 GKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIP 420 (469)
Q Consensus 368 ~klf~~rL~Re~C~~~~g~yiKDLs~LGrDLskvIIIDDsp~s~~~qpeNgIp 420 (469)
. +|... ......+.+-+..+|.++++++.|-|+..-...-...|+.
T Consensus 69 ~-~~~~~------~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ag~~ 114 (154)
T TIGR01670 69 H-LYQGQ------SNKLIAFSDILEKLALAPENVAYIGDDLIDWPVMEKVGLS 114 (154)
T ss_pred E-EEecc------cchHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCe
Confidence 3 44321 1111223344466788999999999998666554445554
No 56
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=96.85 E-value=0.00071 Score=65.07 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=43.0
Q ss_pred EeeCccHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEe
Q 012169 327 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVY 376 (469)
Q Consensus 327 V~lRPgL~eFLe~Lsk~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~ 376 (469)
+.++||+.+||+++.+.+.++|-|++...+++++++.++-.. +|..++-
T Consensus 67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi~~-~~an~l~ 115 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPT-LLCHKLE 115 (203)
T ss_pred CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcCCch-hhceeeE
Confidence 578999999999999878999999999999999999998764 6665554
No 57
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=96.81 E-value=0.0014 Score=62.52 Aligned_cols=101 Identities=14% Similarity=0.078 Sum_probs=81.0
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeeeC---CcccccccccCCCCCcEE
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 402 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~~---g~yiKDLs~LGrDLskvI 402 (469)
+...||+.++|+++. +.+.++|.|++.+..++.+++.+.-.+ +|...+.++.....+ ..|..-++.+|.++++++
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~ 169 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRD-YFDALASAEKLPYSKPHPEVYLNCAAKLGVDPLTCV 169 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchh-cccEEEEcccCCCCCCCHHHHHHHHHHcCCCHHHeE
Confidence 567899999999998 569999999999999999999988765 788877766543222 256667778899999999
Q ss_pred EEECCchhhccCCCceeeeccccCCC
Q 012169 403 IIDNSPQVFRLQVNNGIPIESWFDDP 428 (469)
Q Consensus 403 IIDDsp~s~~~qpeNgIpI~~w~dd~ 428 (469)
+|+|++.-.......|++..-+....
T Consensus 170 ~igDs~~Di~aA~~aG~~~i~v~~~~ 195 (222)
T PRK10826 170 ALEDSFNGMIAAKAARMRSIVVPAPE 195 (222)
T ss_pred EEcCChhhHHHHHHcCCEEEEecCCc
Confidence 99999988877777888765554433
No 58
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=96.79 E-value=0.0013 Score=61.93 Aligned_cols=100 Identities=13% Similarity=0.139 Sum_probs=76.4
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeee---CCcccccccccCCCCCcEE
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVA 402 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~---~g~yiKDLs~LGrDLskvI 402 (469)
...+||+.++|+++. +.|.++|.|++.+..+..++.....-..+|...++.+++... ...|.+-++.+|.++++++
T Consensus 83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l 162 (199)
T PRK09456 83 VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAV 162 (199)
T ss_pred hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHeE
Confidence 457899999999998 569999999999887766554422223478888876665443 2356777888999999999
Q ss_pred EEECCchhhccCCCceeeeccccC
Q 012169 403 IIDNSPQVFRLQVNNGIPIESWFD 426 (469)
Q Consensus 403 IIDDsp~s~~~qpeNgIpI~~w~d 426 (469)
+|||++.........|+...-+.+
T Consensus 163 ~vgD~~~di~aA~~aG~~~i~~~~ 186 (199)
T PRK09456 163 FFDDNADNIEAANALGITSILVTD 186 (199)
T ss_pred EeCCCHHHHHHHHHcCCEEEEecC
Confidence 999999887767778888765544
No 59
>PRK09449 dUMP phosphatase; Provisional
Probab=96.75 E-value=0.0015 Score=61.99 Aligned_cols=93 Identities=15% Similarity=0.141 Sum_probs=73.1
Q ss_pred EeeCccHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeee---CCcccccccccCC-CCCcEE
Q 012169 327 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGV-DLAKVA 402 (469)
Q Consensus 327 V~lRPgL~eFLe~Lsk~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~---~g~yiKDLs~LGr-DLskvI 402 (469)
+...||+.++|++|.+.|.++|.|++.+.+++..++.+...+ +|+..+..+++... ...|.+-++.+|. +.++++
T Consensus 94 ~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~~l~~-~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~ 172 (224)
T PRK09449 94 CTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERTGLRD-YFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRVL 172 (224)
T ss_pred CccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhCChHH-HcCEEEEECccCCCCCCHHHHHHHHHHcCCCCcccEE
Confidence 457899999999999889999999999999999999987765 89888887765433 2356777888886 457899
Q ss_pred EEECCch-hhccCCCceee
Q 012169 403 IIDNSPQ-VFRLQVNNGIP 420 (469)
Q Consensus 403 IIDDsp~-s~~~qpeNgIp 420 (469)
+|+|++. -.......|+.
T Consensus 173 ~vgD~~~~Di~~A~~aG~~ 191 (224)
T PRK09449 173 MVGDNLHSDILGGINAGID 191 (224)
T ss_pred EEcCCcHHHHHHHHHCCCc
Confidence 9999973 45444445544
No 60
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=96.75 E-value=0.0034 Score=56.65 Aligned_cols=73 Identities=19% Similarity=0.155 Sum_probs=53.3
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHH---------
Q 012169 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAA--------- 358 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~--------- 358 (469)
+.+++||||||++.... .|. .....|.+.+.|+++. +.++|+++|+-......
T Consensus 2 K~i~~DiDGTL~~~~~~-----~y~------------~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~ 64 (126)
T TIGR01689 2 KRLVMDLDNTITLTENG-----DYA------------NVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIH 64 (126)
T ss_pred CEEEEeCCCCcccCCCC-----ccc------------ccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchh
Confidence 47999999999764211 010 1346788889999984 78999999999888876
Q ss_pred ---HHHHHhCCCCCceeEEEeec
Q 012169 359 ---QLLDILDPDGKLISRRVYRE 378 (469)
Q Consensus 359 ---~VLd~LDP~~klf~~rL~Re 378 (469)
.+++.|+.++-.+...+.|.
T Consensus 65 ~~~~t~~wL~k~~ipYd~l~~~k 87 (126)
T TIGR01689 65 TLPIIILWLNQHNVPYDEIYVGK 87 (126)
T ss_pred hHHHHHHHHHHcCCCCceEEeCC
Confidence 77888887775566666654
No 61
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.69 E-value=0.0028 Score=69.50 Aligned_cols=109 Identities=12% Similarity=0.146 Sum_probs=72.1
Q ss_pred CCceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcH----------
Q 012169 286 RKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQS---------- 354 (469)
Q Consensus 286 ~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~---------- 354 (469)
.+.+++.||+||||+..... ..| ......| ..+-|++.+.|++|. +.|.|+|+|+...
T Consensus 166 ~~~Kia~fD~DGTLi~t~sg----~~~------~~~~~d~-~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~ 234 (526)
T TIGR01663 166 GQEKIAGFDLDGTIIKTKSG----KVF------PKGPDDW-QIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADD 234 (526)
T ss_pred ccCcEEEEECCCCccccCCC----ccC------CCCHHHe-eecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHH
Confidence 34579999999999975311 001 0011112 224699999999998 5699999999776
Q ss_pred --HHHHHHHHHhCCCCCceeEEEeecceeee---CCccccccccc----CCCCCcEEEEECCc
Q 012169 355 --IYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVL----GVDLAKVAIIDNSP 408 (469)
Q Consensus 355 --~YA~~VLd~LDP~~klf~~rL~Re~C~~~---~g~yiKDLs~L----GrDLskvIIIDDsp 408 (469)
..+..+++.++. .|...+..+.|.+. .|.+..-+..+ +.+++++++|-|+.
T Consensus 235 ~~~ki~~iL~~lgi---pfdviia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaa 294 (526)
T TIGR01663 235 FKAKIEAIVAKLGV---PFQVFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAA 294 (526)
T ss_pred HHHHHHHHHHHcCC---ceEEEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcc
Confidence 468888888865 36654444555443 23443333333 57999999999997
No 62
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=96.67 E-value=0.00094 Score=61.01 Aligned_cols=92 Identities=16% Similarity=0.192 Sum_probs=71.7
Q ss_pred EeeCccHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeee---CCcccccccccCCCCCcEE
Q 012169 327 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVA 402 (469)
Q Consensus 327 V~lRPgL~eFLe~Lsk-~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~---~g~yiKDLs~LGrDLskvI 402 (469)
+...||+.++|+.+.+ .+.++|-|++ .++..+++.++-.+ +|..++..+..... ...|.+-++.+|..++++|
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~-~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v 163 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTD-YFDAIVDADEVKEGKPHPETFLLAAELLGVSPNECV 163 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHH-HCCEeeehhhCCCCCCChHHHHHHHHHcCCCHHHeE
Confidence 5789999999999985 5999999988 78999999887664 78887776554322 2245666778899999999
Q ss_pred EEECCchhhccCCCceeee
Q 012169 403 IIDNSPQVFRLQVNNGIPI 421 (469)
Q Consensus 403 IIDDsp~s~~~qpeNgIpI 421 (469)
+|+|++.-......+|++.
T Consensus 164 ~IgD~~~di~aA~~~G~~~ 182 (185)
T TIGR02009 164 VFEDALAGVQAARAAGMFA 182 (185)
T ss_pred EEeCcHhhHHHHHHCCCeE
Confidence 9999997776666667654
No 63
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=96.66 E-value=0.0026 Score=67.21 Aligned_cols=98 Identities=10% Similarity=0.088 Sum_probs=80.9
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeeeC---CcccccccccCCCCCcEE
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 402 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~~---g~yiKDLs~LGrDLskvI 402 (469)
+...||+.+||+.|. +.+.++|-|++.+.+++.+++.++-.+ ||+..+..+++...+ ..|.+-+..+|.+++++|
T Consensus 215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~-yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peecl 293 (381)
T PLN02575 215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRG-FFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCI 293 (381)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHH-HceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccEE
Confidence 457899999999998 569999999999999999999998765 899988887764332 256777888999999999
Q ss_pred EEECCchhhccCCCceeeecccc
Q 012169 403 IIDNSPQVFRLQVNNGIPIESWF 425 (469)
Q Consensus 403 IIDDsp~s~~~qpeNgIpI~~w~ 425 (469)
+|+|++.-.......|+......
T Consensus 294 ~IGDS~~DIeAAk~AGm~~IgV~ 316 (381)
T PLN02575 294 VFGNSNQTVEAAHDARMKCVAVA 316 (381)
T ss_pred EEcCCHHHHHHHHHcCCEEEEEC
Confidence 99999987766666776655543
No 64
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=96.62 E-value=0.0014 Score=60.24 Aligned_cols=94 Identities=15% Similarity=0.154 Sum_probs=75.1
Q ss_pred EeeCccHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeeeC---CcccccccccCCCCCcEEE
Q 012169 327 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVAI 403 (469)
Q Consensus 327 V~lRPgL~eFLe~Lsk~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~~---g~yiKDLs~LGrDLskvII 403 (469)
+..-|+ .+.|+++.+.+.++|-|++.+.+++.+++.+.-.+ +|+..+..+++...+ ..|.+-++++|.+++++|+
T Consensus 87 ~~~~~~-~e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~~-~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~ 164 (188)
T PRK10725 87 VEPLPL-IEVVKAWHGRRPMAVGTGSESAIAEALLAHLGLRR-YFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVV 164 (188)
T ss_pred CCCccH-HHHHHHHHhCCCEEEEcCCchHHHHHHHHhCCcHh-HceEEEehhhccCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 345576 48899998779999999999999999999998765 899888877664332 2466777888999999999
Q ss_pred EECCchhhccCCCceeeec
Q 012169 404 IDNSPQVFRLQVNNGIPIE 422 (469)
Q Consensus 404 IDDsp~s~~~qpeNgIpI~ 422 (469)
|+|++.-+......|++..
T Consensus 165 igDs~~di~aA~~aG~~~i 183 (188)
T PRK10725 165 FEDADFGIQAARAAGMDAV 183 (188)
T ss_pred EeccHhhHHHHHHCCCEEE
Confidence 9999987776667777654
No 65
>PRK11587 putative phosphatase; Provisional
Probab=96.59 E-value=0.0039 Score=59.47 Aligned_cols=97 Identities=12% Similarity=0.080 Sum_probs=74.9
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeee---CCcccccccccCCCCCcEE
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVA 402 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~---~g~yiKDLs~LGrDLskvI 402 (469)
+...||+.++|++|. +.+.++|-|++...++..+++..... ++...+..++.... ...|.+-+..+|..++++|
T Consensus 82 ~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~--~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~l 159 (218)
T PRK11587 82 ITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLP--APEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECV 159 (218)
T ss_pred ceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCC--CccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccEE
Confidence 567999999999997 66999999999999888888877652 45556665554322 2356777888999999999
Q ss_pred EEECCchhhccCCCceeeecccc
Q 012169 403 IIDNSPQVFRLQVNNGIPIESWF 425 (469)
Q Consensus 403 IIDDsp~s~~~qpeNgIpI~~w~ 425 (469)
+|+|++.-.......|++...+.
T Consensus 160 ~igDs~~di~aA~~aG~~~i~v~ 182 (218)
T PRK11587 160 VVEDAPAGVLSGLAAGCHVIAVN 182 (218)
T ss_pred EEecchhhhHHHHHCCCEEEEEC
Confidence 99999987766667777654443
No 66
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=96.52 E-value=0.003 Score=61.48 Aligned_cols=98 Identities=12% Similarity=0.015 Sum_probs=77.4
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeee---CCcccccccccCC-CCCcE
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGV-DLAKV 401 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~---~g~yiKDLs~LGr-DLskv 401 (469)
+...||+.++|++|. +.+.++|-|++.+.+++.+++.+...+.+|+..+..+..... ...|.+-+.++|. +++++
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~ 177 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAAC 177 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchhe
Confidence 567899999999998 569999999999999999999998776324666666654322 2356777788897 48999
Q ss_pred EEEECCchhhccCCCceeeeccc
Q 012169 402 AIIDNSPQVFRLQVNNGIPIESW 424 (469)
Q Consensus 402 IIIDDsp~s~~~qpeNgIpI~~w 424 (469)
|+|.|++.-.......|+.....
T Consensus 178 l~IGDs~~Di~aA~~aGi~~i~v 200 (253)
T TIGR01422 178 VKVGDTVPDIEEGRNAGMWTVGL 200 (253)
T ss_pred EEECCcHHHHHHHHHCCCeEEEE
Confidence 99999998777777778776554
No 67
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=96.35 E-value=0.0043 Score=59.87 Aligned_cols=95 Identities=12% Similarity=0.032 Sum_probs=74.7
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeee---CCcccccccccCCCCCcEE
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVA 402 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~---~g~yiKDLs~LGrDLskvI 402 (469)
+...||+.++|++|. +.+.++|.|++...++..+++.++-.+ +|...+..+.+... ...|.+-++++|.++++++
T Consensus 94 ~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~-~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~l 172 (229)
T PRK13226 94 SQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQ-RCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDCV 172 (229)
T ss_pred CeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchh-cccEEEecCcCCCCCCCHHHHHHHHHHhCCChhhEE
Confidence 678999999999998 458999999999999999999987654 67766665554322 2246677788999999999
Q ss_pred EEECCchhhccCCCceeeec
Q 012169 403 IIDNSPQVFRLQVNNGIPIE 422 (469)
Q Consensus 403 IIDDsp~s~~~qpeNgIpI~ 422 (469)
+|+|++.-.......|+...
T Consensus 173 ~IGDs~~Di~aA~~aG~~~i 192 (229)
T PRK13226 173 YVGDDERDILAARAAGMPSV 192 (229)
T ss_pred EeCCCHHHHHHHHHCCCcEE
Confidence 99999977655556676653
No 68
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=96.33 E-value=0.0048 Score=58.18 Aligned_cols=93 Identities=17% Similarity=0.214 Sum_probs=71.5
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeee---CCcccccccccCCCCCcEE
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVA 402 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~---~g~yiKDLs~LGrDLskvI 402 (469)
...+||+.+||+.+. +.+.++|.|++...++..+++.++-.+ +|...+..+.+... ...|.+-+..++.++++++
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i 170 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIAD-YFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEML 170 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCcc-CccEEEcCCCCCCCCcChHHHHHHHHHcCCChhheE
Confidence 668999999999998 569999999999999999999987654 67665554433211 1235566677899999999
Q ss_pred EEECCchhhccCCCceee
Q 012169 403 IIDNSPQVFRLQVNNGIP 420 (469)
Q Consensus 403 IIDDsp~s~~~qpeNgIp 420 (469)
+|+|++.-.......|++
T Consensus 171 ~igD~~~Di~~a~~~g~~ 188 (226)
T PRK13222 171 FVGDSRNDIQAARAAGCP 188 (226)
T ss_pred EECCCHHHHHHHHHCCCc
Confidence 999998776555556654
No 69
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=96.26 E-value=0.0083 Score=55.40 Aligned_cols=94 Identities=13% Similarity=0.143 Sum_probs=66.4
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeeccee-eeCC------------ccccccc
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCI-FSDG------------TYTKDLT 392 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~-~~~g------------~yiKDLs 392 (469)
+..+||+.++|+.+. +.+.++|.|++...+++.+++.+.... +|...+..+... .... .+.+-+.
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~-~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~ 157 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDY-VYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKR 157 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCe-EEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHH
Confidence 678999999999998 569999999999999999999998654 666555432111 1111 1111234
Q ss_pred ccCCCCCcEEEEECCchhhccCCCceeee
Q 012169 393 VLGVDLAKVAIIDNSPQVFRLQVNNGIPI 421 (469)
Q Consensus 393 ~LGrDLskvIIIDDsp~s~~~qpeNgIpI 421 (469)
.+|.+++++++|.|+..-...-...|+++
T Consensus 158 ~~~~~~~~~i~iGDs~~D~~~a~~ag~~~ 186 (201)
T TIGR01491 158 ELNPSLTETVAVGDSKNDLPMFEVADISI 186 (201)
T ss_pred HhCCCHHHEEEEcCCHhHHHHHHhcCCeE
Confidence 56888999999999986554444455544
No 70
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=96.24 E-value=0.0078 Score=58.64 Aligned_cols=95 Identities=11% Similarity=0.077 Sum_probs=63.4
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHH--HHHHHh
Q 012169 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAA--QLLDIL 364 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~--~VLd~L 364 (469)
-..++||+||||.+.. ..-||+.++|++|. +.+.++|.|++.+..++ +.++.+
T Consensus 8 ~~~~~~D~dG~l~~~~------------------------~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~ 63 (242)
T TIGR01459 8 YDVFLLDLWGVIIDGN------------------------HTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSL 63 (242)
T ss_pred CCEEEEecccccccCC------------------------ccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHC
Confidence 3478999999998752 24699999999998 57999999999988776 778888
Q ss_pred CCCCCceeEEEeecceeeeCCcccccccccCCCCCcEEEEECCc
Q 012169 365 DPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSP 408 (469)
Q Consensus 365 DP~~klf~~rL~Re~C~~~~g~yiKDLs~LGrDLskvIIIDDsp 408 (469)
+....+|...+....... ..+..-++.+|...+++++|-|+.
T Consensus 64 gl~~~~~~~Ii~s~~~~~--~~l~~~~~~~~~~~~~~~~vGd~~ 105 (242)
T TIGR01459 64 GINADLPEMIISSGEIAV--QMILESKKRFDIRNGIIYLLGHLE 105 (242)
T ss_pred CCCccccceEEccHHHHH--HHHHhhhhhccCCCceEEEeCCcc
Confidence 765325666666443211 011111233444555566666644
No 71
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=96.20 E-value=0.0054 Score=61.17 Aligned_cols=94 Identities=13% Similarity=0.139 Sum_probs=73.1
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeeeC---CcccccccccCCCCCcEE
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 402 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~~---g~yiKDLs~LGrDLskvI 402 (469)
+..+||+.++|+++. +.+.++|.|++...++..+++.++-.+ +|...+..+.+.... ..|.+-+..+|.+++++|
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~-~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l 178 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGR-YFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQSL 178 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHh-hCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHEE
Confidence 457899999999998 579999999999999999999987654 787766655433221 234556677899999999
Q ss_pred EEECCchhhccCCCceeee
Q 012169 403 IIDNSPQVFRLQVNNGIPI 421 (469)
Q Consensus 403 IIDDsp~s~~~qpeNgIpI 421 (469)
+|+|++.-......+|+..
T Consensus 179 ~IGD~~~Di~aA~~aGi~~ 197 (272)
T PRK13223 179 FVGDSRSDVLAAKAAGVQC 197 (272)
T ss_pred EECCCHHHHHHHHHCCCeE
Confidence 9999998776666677653
No 72
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=96.14 E-value=0.0018 Score=66.66 Aligned_cols=95 Identities=15% Similarity=0.193 Sum_probs=65.3
Q ss_pred EeeCccHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEe-eccee---------e--eCCccccc-cc
Q 012169 327 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVY-RESCI---------F--SDGTYTKD-LT 392 (469)
Q Consensus 327 V~lRPgL~eFLe~Lsk-~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~-Re~C~---------~--~~g~yiKD-Ls 392 (469)
+.++||+.++|+.+.+ .+.++|.|++...+++.+++.++-.. .+...+- .+... . .+...++. ++
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~-~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~ 258 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDA-AVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQ 258 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCe-EEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHH
Confidence 6689999999999994 59999999999999999999987654 3333332 11100 0 01111222 24
Q ss_pred ccCCCCCcEEEEECCchhhccCCCceeeec
Q 012169 393 VLGVDLAKVAIIDNSPQVFRLQVNNGIPIE 422 (469)
Q Consensus 393 ~LGrDLskvIIIDDsp~s~~~qpeNgIpI~ 422 (469)
.+|.++++||.|-|+..-..+-..-|+.|.
T Consensus 259 ~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA 288 (322)
T PRK11133 259 EYEIPLAQTVAIGDGANDLPMIKAAGLGIA 288 (322)
T ss_pred HcCCChhhEEEEECCHHHHHHHHHCCCeEE
Confidence 678899999999999976655445555554
No 73
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=96.13 E-value=0.0081 Score=56.47 Aligned_cols=115 Identities=16% Similarity=0.124 Sum_probs=71.0
Q ss_pred CceEEEEeccccccccc-ccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHh
Q 012169 287 KSVTLVLDLDETLVHST-LEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDIL 364 (469)
Q Consensus 287 kK~tLVLDLDeTLVhSs-~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~L 364 (469)
+.+.+|+|+||||+... +..... .....+.. |.+ .=++.+. +.++++|-|......+..+++.+
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~~~~-----------~~~~~~~~-~d~--~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~l 85 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMGNNG-----------EELKAFNV-RDG--YGIRCLLTSGIEVAIITGRKSKLVEDRMTTL 85 (183)
T ss_pred CceEEEEcCCeeeecCEEEEcCCC-----------CEEEEEec-cch--HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHc
Confidence 46799999999999763 111110 11111111 221 1233343 67999999999999999999998
Q ss_pred CCCCCceeEEEeecceeeeCCcccccccccCCCCCcEEEEECCchhhccCCCceeeec
Q 012169 365 DPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIE 422 (469)
Q Consensus 365 DP~~klf~~rL~Re~C~~~~g~yiKDLs~LGrDLskvIIIDDsp~s~~~qpeNgIpI~ 422 (469)
.... +|. .+.-....+.+-+..+|.++++++.|-|++.-...-...|+.+.
T Consensus 86 gl~~-~f~------g~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~~~ 136 (183)
T PRK09484 86 GITH-LYQ------GQSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLSVA 136 (183)
T ss_pred CCce-eec------CCCcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCeEe
Confidence 7553 342 11111123344556779999999999999866654444566543
No 74
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=96.03 E-value=0.0098 Score=58.61 Aligned_cols=98 Identities=12% Similarity=0.056 Sum_probs=75.9
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeee---CCcccccccccCCC-CCcE
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVD-LAKV 401 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~---~g~yiKDLs~LGrD-Lskv 401 (469)
+..-||+.++|++|. +.+.++|-|++.+..+..+++.+.-.+-++...+..++.... ...|.+-++.+|.. ++.+
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e~ 179 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAAC 179 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcce
Confidence 467899999999998 569999999999999999999877665334666666654332 23567777888975 6899
Q ss_pred EEEECCchhhccCCCceeeeccc
Q 012169 402 AIIDNSPQVFRLQVNNGIPIESW 424 (469)
Q Consensus 402 IIIDDsp~s~~~qpeNgIpI~~w 424 (469)
|+|+|++.-+......|++....
T Consensus 180 l~IGDs~~Di~aA~~aG~~~i~v 202 (267)
T PRK13478 180 VKVDDTVPGIEEGLNAGMWTVGV 202 (267)
T ss_pred EEEcCcHHHHHHHHHCCCEEEEE
Confidence 99999998776666777765544
No 75
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=95.99 E-value=0.0056 Score=61.74 Aligned_cols=92 Identities=16% Similarity=0.128 Sum_probs=55.1
Q ss_pred CCceEEEEecccccccccccc----cCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHH
Q 012169 286 RKSVTLVLDLDETLVHSTLEY----CDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQL 360 (469)
Q Consensus 286 ~kK~tLVLDLDeTLVhSs~~~----~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~V 360 (469)
.+++.+|||+|||+++.+.-. .....|.- -.++.-........-||+.+||+++. +...++|.|+....+.+..
T Consensus 73 ~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~-~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T 151 (266)
T TIGR01533 73 DKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDP-ETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAAT 151 (266)
T ss_pred CCCCEEEEeCccccccChHHHHHHhcCCCcCCH-HHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHH
Confidence 457899999999999876211 11111100 00000001123556799999999997 5689999999887666644
Q ss_pred HHHh---CCCCCceeEEEeec
Q 012169 361 LDIL---DPDGKLISRRVYRE 378 (469)
Q Consensus 361 Ld~L---DP~~klf~~rL~Re 378 (469)
+..| +.....+.+.++|+
T Consensus 152 ~~~Lkk~Gi~~~~~d~lllr~ 172 (266)
T TIGR01533 152 LKNLKRFGFPQADEEHLLLKK 172 (266)
T ss_pred HHHHHHcCcCCCCcceEEeCC
Confidence 4444 43332345666665
No 76
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=95.99 E-value=0.0085 Score=60.34 Aligned_cols=98 Identities=12% Similarity=0.155 Sum_probs=72.4
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCC--CCceeEEEeecceeee---CCcccccccccCCCCCc
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPD--GKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAK 400 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~--~klf~~rL~Re~C~~~---~g~yiKDLs~LGrDLsk 400 (469)
+.+.||+.++|+++. +.+.++|.|++...++..+++.+.-. ..+|... ..+.+... ...|.+-+..+|.++++
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v-~~~~~~~~KP~p~~~~~a~~~~~~~p~~ 221 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVF-AGDDVPKKKPDPDIYNLAAETLGVDPSR 221 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEE-eccccCCCCCCHHHHHHHHHHhCcChHH
Confidence 468999999999998 56999999999999999999877322 1223322 34443221 12566677888999999
Q ss_pred EEEEECCchhhccCCCceeeecccc
Q 012169 401 VAIIDNSPQVFRLQVNNGIPIESWF 425 (469)
Q Consensus 401 vIIIDDsp~s~~~qpeNgIpI~~w~ 425 (469)
+|+|+|++.-+.....+|+......
T Consensus 222 ~l~IGDs~~Di~aA~~aG~~~i~v~ 246 (286)
T PLN02779 222 CVVVEDSVIGLQAAKAAGMRCIVTK 246 (286)
T ss_pred EEEEeCCHHhHHHHHHcCCEEEEEc
Confidence 9999999988877667777765543
No 77
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=95.99 E-value=0.0047 Score=58.60 Aligned_cols=95 Identities=7% Similarity=0.065 Sum_probs=74.1
Q ss_pred EeeCccHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHhCCCCCcee-EEEeecceeee---CCcccccccccCCCCCcEE
Q 012169 327 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLIS-RRVYRESCIFS---DGTYTKDLTVLGVDLAKVA 402 (469)
Q Consensus 327 V~lRPgL~eFLe~Lsk~YEIVIfTAs~~~YA~~VLd~LDP~~klf~-~rL~Re~C~~~---~g~yiKDLs~LGrDLskvI 402 (469)
+...||+.++|+.+. +.++|.|++.+.+++.+++.++-.. +|. ..+..++.... ...|.+-+..+|..++++|
T Consensus 87 ~~~~~gv~~~L~~L~--~~~~ivTn~~~~~~~~~l~~~~l~~-~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l 163 (221)
T PRK10563 87 LEPIAGANALLESIT--VPMCVVSNGPVSKMQHSLGKTGMLH-YFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENCI 163 (221)
T ss_pred CCcCCCHHHHHHHcC--CCEEEEeCCcHHHHHHHHHhcChHH-hCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHeE
Confidence 567899999999994 8999999999999999999887765 675 45555443321 2356677788899999999
Q ss_pred EEECCchhhccCCCceeeeccc
Q 012169 403 IIDNSPQVFRLQVNNGIPIESW 424 (469)
Q Consensus 403 IIDDsp~s~~~qpeNgIpI~~w 424 (469)
+|+|++.-.......|+++.-+
T Consensus 164 ~igDs~~di~aA~~aG~~~i~~ 185 (221)
T PRK10563 164 LVDDSSAGAQSGIAAGMEVFYF 185 (221)
T ss_pred EEeCcHhhHHHHHHCCCEEEEE
Confidence 9999998776666778776544
No 78
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=95.97 E-value=0.0034 Score=59.11 Aligned_cols=98 Identities=18% Similarity=0.105 Sum_probs=70.0
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHH--HHHHHHHhCCCCCceeEEEeecceeee---CCcccccccccCCCCCc
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIY--AAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAK 400 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~Y--A~~VLd~LDP~~klf~~rL~Re~C~~~---~g~yiKDLs~LGrDLsk 400 (469)
+.+.||+.++|++|. +.|.++|.|++...+ +...+..++.. .+|+..+..+..... ...|.+-++++|.++++
T Consensus 93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~-~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~~ 171 (211)
T TIGR02247 93 TKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIM-ALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPEE 171 (211)
T ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhH-hhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHHH
Confidence 567899999999998 469999999987654 32223222222 468777765544322 23567777889999999
Q ss_pred EEEEECCchhhccCCCceeeecccc
Q 012169 401 VAIIDNSPQVFRLQVNNGIPIESWF 425 (469)
Q Consensus 401 vIIIDDsp~s~~~qpeNgIpI~~w~ 425 (469)
+++|||++.........|+...-+.
T Consensus 172 ~l~i~D~~~di~aA~~aG~~~i~v~ 196 (211)
T TIGR02247 172 CVFLDDLGSNLKPAAALGITTIKVS 196 (211)
T ss_pred eEEEcCCHHHHHHHHHcCCEEEEEC
Confidence 9999999988776667787765443
No 79
>PRK08238 hypothetical protein; Validated
Probab=95.96 E-value=0.0067 Score=65.82 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=40.4
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeec
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRE 378 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re 378 (469)
...+|++.++|+++. +.+.++|-|++.+.++++++++++- |+..+..+
T Consensus 71 lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl----Fd~Vigsd 119 (479)
T PRK08238 71 LPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL----FDGVFASD 119 (479)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC----CCEEEeCC
Confidence 347899999999997 6799999999999999999999853 56665544
No 80
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=95.93 E-value=0.012 Score=55.42 Aligned_cols=93 Identities=14% Similarity=0.106 Sum_probs=75.5
Q ss_pred EeeCccHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeeeC---CcccccccccCCCCCcEEE
Q 012169 327 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVAI 403 (469)
Q Consensus 327 V~lRPgL~eFLe~Lsk~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~~---g~yiKDLs~LGrDLskvII 403 (469)
+...|++.++|+.+.+.|.++|.|.+...++...+..+.. ..+|+..++.+.....+ ..|..-+..+|.+++++++
T Consensus 98 ~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~gl-~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l~ 176 (229)
T COG1011 98 LPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLGL-LDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEALF 176 (229)
T ss_pred CccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcCC-hhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEEE
Confidence 6778999999999997799999999999999999999984 45899999987766432 3567778889999999999
Q ss_pred EECCchhh-ccCCCceee
Q 012169 404 IDNSPQVF-RLQVNNGIP 420 (469)
Q Consensus 404 IDDsp~s~-~~qpeNgIp 420 (469)
|||+...- .....-|+.
T Consensus 177 VgD~~~~di~gA~~~G~~ 194 (229)
T COG1011 177 VGDSLENDILGARALGMK 194 (229)
T ss_pred ECCChhhhhHHHHhcCcE
Confidence 99999766 333334443
No 81
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=95.92 E-value=0.0082 Score=56.80 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=74.4
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCC-CceeEEEeecceeee---CCcccccccccCCC-CCc
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDG-KLISRRVYRESCIFS---DGTYTKDLTVLGVD-LAK 400 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~-klf~~rL~Re~C~~~---~g~yiKDLs~LGrD-Lsk 400 (469)
+.+.||+.++|+++. +.+.++|.|++...++..+++.++... .+|...+..+.-... ...|.+-+.++|.. +++
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~ 165 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQS 165 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCChhH
Confidence 468899999999997 679999999999999999999998652 578877775542211 23455667788886 799
Q ss_pred EEEEECCchhhccCCCceeee
Q 012169 401 VAIIDNSPQVFRLQVNNGIPI 421 (469)
Q Consensus 401 vIIIDDsp~s~~~qpeNgIpI 421 (469)
+++|+|++.-.......|++.
T Consensus 166 ~~~igD~~~Di~aa~~aG~~~ 186 (220)
T TIGR03351 166 VAVAGDTPNDLEAGINAGAGA 186 (220)
T ss_pred eEEeCCCHHHHHHHHHCCCCe
Confidence 999999997776666677765
No 82
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=95.86 E-value=0.0098 Score=55.57 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=66.7
Q ss_pred eeCccHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeeeC---CcccccccccCCCCCcEEE
Q 012169 328 KQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVAI 403 (469)
Q Consensus 328 ~lRPgL~eFLe~Lsk-~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~~---g~yiKDLs~LGrDLskvII 403 (469)
...||+.++|++|++ .+.++|.|++...+ ..+++.++-.+ +|...+..+.+...+ ..|.+-++.+|.+++++|+
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~~~l~~-~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ 182 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEALGLLE-YFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEALH 182 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHHCCcHH-hcceEEeecccCCCCCCHHHHHHHHHHcCCChhHEEE
Confidence 567999999999985 59999999988764 77888876654 788877766554332 2466777888999999999
Q ss_pred EECCc-hhhccCCCcee
Q 012169 404 IDNSP-QVFRLQVNNGI 419 (469)
Q Consensus 404 IDDsp-~s~~~qpeNgI 419 (469)
|+|++ .-.......|+
T Consensus 183 IgD~~~~Di~~A~~aG~ 199 (203)
T TIGR02252 183 IGDSLRNDYQGARAAGW 199 (203)
T ss_pred ECCCchHHHHHHHHcCC
Confidence 99997 33433334444
No 83
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=95.83 E-value=0.0072 Score=55.20 Aligned_cols=91 Identities=15% Similarity=0.156 Sum_probs=68.4
Q ss_pred eeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeee---CCcccccccccCCCCCcEEE
Q 012169 328 KQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVAI 403 (469)
Q Consensus 328 ~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~---~g~yiKDLs~LGrDLskvII 403 (469)
...||+.++|++|. +.+.++|-|++. .+..+++.+.-.+ +|+..+..+.-... ...|.+-++.+|.+++++|+
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~~-~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v~ 163 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLID-YFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECIG 163 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcHh-hCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 56899999999998 569999999764 3577888887664 78877765432211 23466777888999999999
Q ss_pred EECCchhhccCCCceeee
Q 012169 404 IDNSPQVFRLQVNNGIPI 421 (469)
Q Consensus 404 IDDsp~s~~~qpeNgIpI 421 (469)
|+|++.-+.....+|++.
T Consensus 164 vgD~~~di~aA~~aG~~~ 181 (185)
T TIGR01990 164 IEDAQAGIEAIKAAGMFA 181 (185)
T ss_pred EecCHHHHHHHHHcCCEE
Confidence 999997776666667654
No 84
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=95.78 E-value=0.0083 Score=58.67 Aligned_cols=94 Identities=12% Similarity=0.097 Sum_probs=70.1
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhC---CCCCceeEEEeeccee-eeCCcccccccccCCCCCcE
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILD---PDGKLISRRVYRESCI-FSDGTYTKDLTVLGVDLAKV 401 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LD---P~~klf~~rL~Re~C~-~~~g~yiKDLs~LGrDLskv 401 (469)
..+.|++.++|+++. +.+.++|+|++...+...+++..+ -. .+|+..+....+. .....|.+-+..+|.+++++
T Consensus 94 ~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~-~~f~~~fd~~~g~KP~p~~y~~i~~~lgv~p~e~ 172 (220)
T TIGR01691 94 SHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLT-PYFSGYFDTTVGLKTEAQSYVKIAGQLGSPPREI 172 (220)
T ss_pred cCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchh-hhcceEEEeCcccCCCHHHHHHHHHHhCcChhHE
Confidence 557899999999997 679999999999999999988763 22 2565544221111 11346778888899999999
Q ss_pred EEEECCchhhccCCCceeee
Q 012169 402 AIIDNSPQVFRLQVNNGIPI 421 (469)
Q Consensus 402 IIIDDsp~s~~~qpeNgIpI 421 (469)
++|+|++.-.......|+..
T Consensus 173 lfVgDs~~Di~AA~~AG~~t 192 (220)
T TIGR01691 173 LFLSDIINELDAARKAGLHT 192 (220)
T ss_pred EEEeCCHHHHHHHHHcCCEE
Confidence 99999998776666667654
No 85
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=95.74 E-value=0.021 Score=53.43 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=64.7
Q ss_pred eCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeee--CCcccccccccCCCCCcEEEEE
Q 012169 329 QRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS--DGTYTKDLTVLGVDLAKVAIID 405 (469)
Q Consensus 329 lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~--~g~yiKDLs~LGrDLskvIIID 405 (469)
..|+..++|+.+. +.+.++|.|++.+.+++.+++.+.-.. +|...+..+..... ...|.+-+..+|.+++++|+|.
T Consensus 107 ~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~-~f~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~i~vG 185 (197)
T TIGR01548 107 TLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEI-LFPVQIWMEDCPPKPNPEPLILAAKALGVEACHAAMVG 185 (197)
T ss_pred cccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchh-hCCEEEeecCCCCCcCHHHHHHHHHHhCcCcccEEEEe
Confidence 4456699999998 469999999999999999999998764 88888776654321 2245666778899999999999
Q ss_pred CCchh
Q 012169 406 NSPQV 410 (469)
Q Consensus 406 Dsp~s 410 (469)
|++.-
T Consensus 186 D~~~D 190 (197)
T TIGR01548 186 DTVDD 190 (197)
T ss_pred CCHHH
Confidence 99853
No 86
>PLN02811 hydrolase
Probab=95.59 E-value=0.011 Score=56.56 Aligned_cols=97 Identities=13% Similarity=0.117 Sum_probs=70.8
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHH-HHHHhCCCCCceeEEEeec--ceee---eCCcccccccccC---C
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQ-LLDILDPDGKLISRRVYRE--SCIF---SDGTYTKDLTVLG---V 396 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~-VLd~LDP~~klf~~rL~Re--~C~~---~~g~yiKDLs~LG---r 396 (469)
+.+.||+.++|+.|+ ..+.++|-|++.+.+... +++..... .+|...++.+ .+.. ....|.+-+..+| .
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~-~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~ 155 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELF-SLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPV 155 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHH-hhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCC
Confidence 456899999999998 469999999998876554 33322222 3788888877 5433 2335667777775 8
Q ss_pred CCCcEEEEECCchhhccCCCceeeeccc
Q 012169 397 DLAKVAIIDNSPQVFRLQVNNGIPIESW 424 (469)
Q Consensus 397 DLskvIIIDDsp~s~~~qpeNgIpI~~w 424 (469)
.++++|+|+|++.-.......|++..-.
T Consensus 156 ~~~~~v~IgDs~~di~aA~~aG~~~i~v 183 (220)
T PLN02811 156 DPGKVLVFEDAPSGVEAAKNAGMSVVMV 183 (220)
T ss_pred CccceEEEeccHhhHHHHHHCCCeEEEE
Confidence 8999999999998777666777776554
No 87
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=95.58 E-value=0.021 Score=55.47 Aligned_cols=85 Identities=14% Similarity=0.232 Sum_probs=62.8
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeeeC---Ccc----ccc------cc
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTY----TKD------LT 392 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~~---g~y----iKD------Ls 392 (469)
+.++||+.+.++.+. ..+.++|.|+|...+++++.+.|..+. .+..++-.+.=.+.. |.. .|. ++
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~-~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~ 154 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY-VVANELEIDDGKLTGRVVGPICDGEGKAKALRELAA 154 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch-heeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHH
Confidence 788999999999999 559999999999999999999999886 567777655411221 111 111 23
Q ss_pred ccCCCCCcEEEEECCchhhc
Q 012169 393 VLGVDLAKVAIIDNSPQVFR 412 (469)
Q Consensus 393 ~LGrDLskvIIIDDsp~s~~ 412 (469)
.+|.++++++-+=|+..-..
T Consensus 155 ~~g~~~~~~~a~gDs~nDlp 174 (212)
T COG0560 155 ELGIPLEETVAYGDSANDLP 174 (212)
T ss_pred HcCCCHHHeEEEcCchhhHH
Confidence 45888888888888875443
No 88
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.17 E-value=0.03 Score=66.17 Aligned_cols=97 Identities=10% Similarity=0.099 Sum_probs=79.6
Q ss_pred eCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeee---CCcccccccccCCCCCcEEEE
Q 012169 329 QRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVAII 404 (469)
Q Consensus 329 lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~---~g~yiKDLs~LGrDLskvIII 404 (469)
..||+.++|++|. +.|.++|.|++.+.+++.+++.+.-...+|...+..+.+... ...|.+-++.+|.+++++|+|
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~I 241 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSECVVI 241 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCcccEEEE
Confidence 4799999999998 569999999999999999999987654578888887766533 236777788899999999999
Q ss_pred ECCchhhccCCCceeeecccc
Q 012169 405 DNSPQVFRLQVNNGIPIESWF 425 (469)
Q Consensus 405 DDsp~s~~~qpeNgIpI~~w~ 425 (469)
+|++.-+......|++.....
T Consensus 242 gDs~~Di~AA~~aGm~~I~v~ 262 (1057)
T PLN02919 242 EDALAGVQAARAAGMRCIAVT 262 (1057)
T ss_pred cCCHHHHHHHHHcCCEEEEEC
Confidence 999987776667777655443
No 89
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=95.00 E-value=0.06 Score=51.51 Aligned_cols=96 Identities=11% Similarity=0.065 Sum_probs=64.7
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEE--eecceeeeC-------------Cccccc
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRV--YRESCIFSD-------------GTYTKD 390 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL--~Re~C~~~~-------------g~yiKD 390 (469)
+.++||+.+||+++. +.+.++|.|++.+.|++++++.+-+...++...+ ..+...... ..+.+-
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~~ 152 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGLIPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPSL 152 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHhCCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHHH
Confidence 678999999999998 5699999999999999999998722222332222 121111100 012334
Q ss_pred ccccCCCCCcEEEEECCchhhccCCCceeeec
Q 012169 391 LTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIE 422 (469)
Q Consensus 391 Ls~LGrDLskvIIIDDsp~s~~~qpeNgIpI~ 422 (469)
+..++.+..++|.|-|+..-.......|+.+.
T Consensus 153 l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a 184 (219)
T PRK09552 153 IRKLSDTNDFHIVIGDSITDLEAAKQADKVFA 184 (219)
T ss_pred HHHhccCCCCEEEEeCCHHHHHHHHHCCccee
Confidence 45567788899999999976655555666443
No 90
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=94.81 E-value=0.029 Score=59.96 Aligned_cols=92 Identities=13% Similarity=0.169 Sum_probs=70.2
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceee--eCCcccccccccCCCCCcEEE
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIF--SDGTYTKDLTVLGVDLAKVAI 403 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~--~~g~yiKDLs~LGrDLskvII 403 (469)
+.+.||+.++|+++. +.+.+.|.|++.+.++..+++.++-.. +|...+..+.... .+..|.+-+..+ +++++|+
T Consensus 329 ~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~-~f~~i~~~d~v~~~~kP~~~~~al~~l--~~~~~v~ 405 (459)
T PRK06698 329 GALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQ-WVTETFSIEQINSLNKSDLVKSILNKY--DIKEAAV 405 (459)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHh-hcceeEecCCCCCCCCcHHHHHHHHhc--CcceEEE
Confidence 567899999999998 669999999999999999999988765 7888877665321 122344444444 4688999
Q ss_pred EECCchhhccCCCceeee
Q 012169 404 IDNSPQVFRLQVNNGIPI 421 (469)
Q Consensus 404 IDDsp~s~~~qpeNgIpI 421 (469)
|.|++.-+......|+..
T Consensus 406 VGDs~~Di~aAk~AG~~~ 423 (459)
T PRK06698 406 VGDRLSDINAAKDNGLIA 423 (459)
T ss_pred EeCCHHHHHHHHHCCCeE
Confidence 999997776666677654
No 91
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=94.77 E-value=0.091 Score=51.36 Aligned_cols=58 Identities=31% Similarity=0.339 Sum_probs=50.8
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCC
Q 012169 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDP 366 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP 366 (469)
.+.+++||||||+.+... .+|...+.|+++. +...++|-|.-.-..+.++++.|..
T Consensus 3 ~kli~~DlDGTLl~~~~~-----------------------i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~ 59 (264)
T COG0561 3 IKLLAFDLDGTLLDSNKT-----------------------ISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGL 59 (264)
T ss_pred eeEEEEcCCCCccCCCCc-----------------------cCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCC
Confidence 578999999999987421 5788999999885 8899999999999999999999998
Q ss_pred CC
Q 012169 367 DG 368 (469)
Q Consensus 367 ~~ 368 (469)
.+
T Consensus 60 ~~ 61 (264)
T COG0561 60 DG 61 (264)
T ss_pred Cc
Confidence 76
No 92
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=94.69 E-value=0.075 Score=52.62 Aligned_cols=57 Identities=21% Similarity=0.171 Sum_probs=46.9
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhCC
Q 012169 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDP 366 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk-~YEIVIfTAs~~~YA~~VLd~LDP 366 (469)
.+.+++||||||+.... ...|...+.|+++.+ .+.++|-|.-....+..+++.++.
T Consensus 4 ~kli~~DlDGTLl~~~~-----------------------~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l 60 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHT-----------------------YSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGL 60 (273)
T ss_pred ceEEEEcCcccCcCCCC-----------------------cCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCC
Confidence 46899999999997521 135778899999985 599999999999999999999875
Q ss_pred C
Q 012169 367 D 367 (469)
Q Consensus 367 ~ 367 (469)
.
T Consensus 61 ~ 61 (273)
T PRK00192 61 E 61 (273)
T ss_pred C
Confidence 4
No 93
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=94.64 E-value=0.05 Score=50.53 Aligned_cols=104 Identities=20% Similarity=0.256 Sum_probs=56.1
Q ss_pred eEEEEeccccccccccccc---CCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCc---H-------
Q 012169 289 VTLVLDLDETLVHSTLEYC---DDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQ---S------- 354 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~---~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~---~------- 354 (469)
|.+.|||||||+....... ...| +..+-|++-+-|+++. +.|.|||+|... +
T Consensus 1 Kia~fD~DgTLi~~~s~~~f~~~~~D--------------~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~ 66 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKFPKDPDD--------------WKFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDL 66 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS-SSTCG--------------GEEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHH
T ss_pred CEEEEeCCCCccCCCCCCcCcCCHHH--------------hhhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchH
Confidence 4789999999999753211 1111 2445678999999998 579999999752 1
Q ss_pred ----HHHHHHHHHhCCCCCceeEEEe---ecceee-eCCccccccccc----CCCCCcEEEEECCchh
Q 012169 355 ----IYAAQLLDILDPDGKLISRRVY---RESCIF-SDGTYTKDLTVL----GVDLAKVAIIDNSPQV 410 (469)
Q Consensus 355 ----~YA~~VLd~LDP~~klf~~rL~---Re~C~~-~~g~yiKDLs~L----GrDLskvIIIDDsp~s 410 (469)
...+.+++.|+- .+ ..++ .+.|.. ..|.+..-++.+ ..|+++.++|=|.+.-
T Consensus 67 ~~~~~ki~~il~~l~i---p~-~~~~a~~~d~~RKP~~GM~~~~~~~~~~~~~id~~~Sf~VGDaagr 130 (159)
T PF08645_consen 67 ENFHEKIENILKELGI---PI-QVYAAPHKDPCRKPNPGMWEFALKDYNDGVEIDLANSFYVGDAAGR 130 (159)
T ss_dssp HHHHHHHHHHHHHCTS----E-EEEECGCSSTTSTTSSHHHHHHCCCTSTT--S-CCC-EEEESSCHC
T ss_pred HHHHHHHHHHHHHcCC---ce-EEEecCCCCCCCCCchhHHHHHHHhccccccccccceEEEeccCCC
Confidence 233445555532 22 2222 122221 124443333333 3588999999987543
No 94
>PTZ00445 p36-lilke protein; Provisional
Probab=94.49 E-value=0.051 Score=53.48 Aligned_cols=128 Identities=15% Similarity=0.171 Sum_probs=78.9
Q ss_pred CCCceEEEEeccccccccc----ccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHH---
Q 012169 285 GRKSVTLVLDLDETLVHST----LEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIY--- 356 (469)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs----~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~Y--- 356 (469)
..+-+.+++|||.|||-.- |++. +....+.-..||.+..+++.|. ..+.|+|-|-+.+.-
T Consensus 40 ~~GIk~Va~D~DnTlI~~HsgG~~~~~------------~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~ 107 (219)
T PTZ00445 40 ECGIKVIASDFDLTMITKHSGGYIDPD------------NDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPS 107 (219)
T ss_pred HcCCeEEEecchhhhhhhhcccccCCC------------cchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccc
Confidence 4567899999999998621 2211 0112233557999999999998 469999999998754
Q ss_pred ------------HHHHHHHhCCCCCceeE------EEeecceeee--------CCc--c--cccccccCCCCCcEEEEEC
Q 012169 357 ------------AAQLLDILDPDGKLISR------RVYRESCIFS--------DGT--Y--TKDLTVLGVDLAKVAIIDN 406 (469)
Q Consensus 357 ------------A~~VLd~LDP~~klf~~------rL~Re~C~~~--------~g~--y--iKDLs~LGrDLskvIIIDD 406 (469)
+...|+.=.-.-+ +.. +++++.-.+. .+. | .+=++..|.+++.+++|||
T Consensus 108 ~~~~~~Isg~~li~~~lk~s~~~~~-i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD 186 (219)
T PTZ00445 108 ENRPRYISGDRMVEAALKKSKCDFK-IKKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDD 186 (219)
T ss_pred cCCcceechHHHHHHHHHhcCccce-eeeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecC
Confidence 3444443211111 111 1122221111 122 3 4445667999999999999
Q ss_pred CchhhccCCCceeeecccc
Q 012169 407 SPQVFRLQVNNGIPIESWF 425 (469)
Q Consensus 407 sp~s~~~qpeNgIpI~~w~ 425 (469)
.+..+.....-|+...-+.
T Consensus 187 ~~~NVeaA~~lGi~ai~f~ 205 (219)
T PTZ00445 187 DMNNCKNALKEGYIALHVT 205 (219)
T ss_pred CHHHHHHHHHCCCEEEEcC
Confidence 9998866666676655554
No 95
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=94.46 E-value=0.091 Score=49.16 Aligned_cols=54 Identities=28% Similarity=0.284 Sum_probs=44.8
Q ss_pred EEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCC
Q 012169 291 LVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPD 367 (469)
Q Consensus 291 LVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~ 367 (469)
|++||||||+++... .-|...+.|+++. +...++|.|.-....+..+++.+.-.
T Consensus 1 i~~DlDGTLl~~~~~-----------------------i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~ 55 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGK-----------------------ISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGID 55 (254)
T ss_dssp EEEECCTTTCSTTSS-----------------------SCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHC
T ss_pred cEEEECCceecCCCe-----------------------eCHHHHHHHHhhcccceEEEEEccCcccccccccccccch
Confidence 689999999996421 3577888899888 78999999999999999999977643
No 96
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=94.43 E-value=0.066 Score=50.41 Aligned_cols=114 Identities=12% Similarity=0.125 Sum_probs=72.4
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceec-eEEEeeCccHHHHHHHh-hcceEEEEEcCCcHHHHHHHHHHhC
Q 012169 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEH-TVYVKQRPHLKTFLERV-AEMFEVVIFTASQSIYAAQLLDILD 365 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~-~vyV~lRPgL~eFLe~L-sk~YEIVIfTAs~~~YA~~VLd~LD 365 (469)
-+++|||.||+|-.-+. .++..+. ..-+..|-+.-- +.| .+.+.+.|.|+....+++.+++.+.
T Consensus 7 i~~~v~d~dGv~tdg~~------------~~~~~g~~~~~~~~~D~~~~--~~L~~~Gi~laIiT~k~~~~~~~~l~~lg 72 (169)
T TIGR02726 7 IKLVILDVDGVMTDGRI------------VINDEGIESRNFDIKDGMGV--IVLQLCGIDVAIITSKKSGAVRHRAEELK 72 (169)
T ss_pred CeEEEEeCceeeECCeE------------EEcCCCcEEEEEecchHHHH--HHHHHCCCEEEEEECCCcHHHHHHHHHCC
Confidence 56899999999976531 1222222 222334444432 223 3679999999999999999999997
Q ss_pred CCCCceeEEEeecceeeeCCcccccccccCCCCCcEEEEECCchhhccCCCceeeec
Q 012169 366 PDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIE 422 (469)
Q Consensus 366 P~~klf~~rL~Re~C~~~~g~yiKDLs~LGrDLskvIIIDDsp~s~~~qpeNgIpI~ 422 (469)
-.. +|... ......+..-+..+|.++++++.|-|++.-...-...|+.+.
T Consensus 73 i~~-~f~~~------kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~a 122 (169)
T TIGR02726 73 IKR-FHEGI------KKKTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAVA 122 (169)
T ss_pred CcE-EEecC------CCCHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeEE
Confidence 663 55421 001123344456678899999999999865544444454443
No 97
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=94.25 E-value=0.015 Score=52.99 Aligned_cols=76 Identities=13% Similarity=0.113 Sum_probs=62.0
Q ss_pred EeeCccHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeee---CCcccccccccCCCCCcEEE
Q 012169 327 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVAI 403 (469)
Q Consensus 327 V~lRPgL~eFLe~Lsk~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~---~g~yiKDLs~LGrDLskvII 403 (469)
+..+||+.++|+. ++|.|++.+.+...+++.+.... +|+..+..+..... ...|.+-++++|.+++++++
T Consensus 89 ~~~~~g~~~~L~~------~~i~Tn~~~~~~~~~l~~~~l~~-~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l~ 161 (175)
T TIGR01493 89 LPPWPDSAAALAR------VAILSNASHWAFDQFAQQAGLPW-YFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVLM 161 (175)
T ss_pred CCCCCchHHHHHH------HhhhhCCCHHHHHHHHHHCCCHH-HHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeEe
Confidence 5579999999994 78999999999999999987654 78877776654332 23577788889999999999
Q ss_pred EECCch
Q 012169 404 IDNSPQ 409 (469)
Q Consensus 404 IDDsp~ 409 (469)
|+|++.
T Consensus 162 vgD~~~ 167 (175)
T TIGR01493 162 VAAHQW 167 (175)
T ss_pred EecChh
Confidence 999974
No 98
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=94.23 E-value=0.073 Score=51.04 Aligned_cols=126 Identities=17% Similarity=0.246 Sum_probs=84.0
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCc------------H
Q 012169 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQ------------S 354 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~------------~ 354 (469)
.+.|+||.||||+--... |. ... --....||+.+=|..+. ..|.+||+|... .
T Consensus 5 ~k~lflDRDGtin~d~~~------yv-----~~~---~~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~ 70 (181)
T COG0241 5 QKALFLDRDGTINIDKGD------YV-----DSL---DDFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFD 70 (181)
T ss_pred CcEEEEcCCCceecCCCc------cc-----CcH---HHhccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHH
Confidence 579999999999753210 10 000 01456899999999997 569999999943 3
Q ss_pred HHHHHHHHHhCCCCCceeEEEeecc-----eeee---CCcccccccccCCCCCcEEEEECCchhhccCCCc---eeeecc
Q 012169 355 IYAAQLLDILDPDGKLISRRVYRES-----CIFS---DGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNN---GIPIES 423 (469)
Q Consensus 355 ~YA~~VLd~LDP~~klf~~rL~Re~-----C~~~---~g~yiKDLs~LGrDLskvIIIDDsp~s~~~qpeN---gIpI~~ 423 (469)
.+-+.+++.|--.|.-|+.+++..| |.+. .|.+..-++..+.|+++.++|=|+..-..+.... ++.+..
T Consensus 71 ~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~~~~~~~ 150 (181)
T COG0241 71 KLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRKPKPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIKGVLVLT 150 (181)
T ss_pred HHHHHHHHHHHHcCCccceEEECCCCCCCCCcccCCChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCCceEEEc
Confidence 4445577777777767899998543 5443 3566666777789999999999996433222222 555555
Q ss_pred ccCC
Q 012169 424 WFDD 427 (469)
Q Consensus 424 w~dd 427 (469)
|.+.
T Consensus 151 ~~~~ 154 (181)
T COG0241 151 GIGV 154 (181)
T ss_pred Cccc
Confidence 5543
No 99
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=94.22 E-value=0.09 Score=45.18 Aligned_cols=50 Identities=24% Similarity=0.267 Sum_probs=36.7
Q ss_pred EEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHh
Q 012169 291 LVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDIL 364 (469)
Q Consensus 291 LVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk-~YEIVIfTAs~~~YA~~VLd~L 364 (469)
++||+||||.+.. ..=||+.+||+++.+ ...+++.|.+...-...+.+.|
T Consensus 1 ~l~D~dGvl~~g~------------------------~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 1 FLFDLDGVLYNGN------------------------EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp EEEESTTTSEETT------------------------EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred CEEeCccEeEeCC------------------------CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 5899999998742 135999999999995 5999999999855555555444
No 100
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=94.01 E-value=0.17 Score=50.11 Aligned_cols=59 Identities=19% Similarity=0.252 Sum_probs=45.8
Q ss_pred CCceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHh
Q 012169 286 RKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDIL 364 (469)
Q Consensus 286 ~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~L 364 (469)
+.++.+++||||||++.... .-|-..+-|+++. +...++|.|.-....+.++++.|
T Consensus 5 ~~~~lI~~DlDGTLL~~~~~-----------------------i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l 61 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDSHTY-----------------------DWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTL 61 (271)
T ss_pred CCCeEEEEeCccCCcCCCCc-----------------------CcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHh
Confidence 44679999999999985210 1244567788887 56999999999999999999998
Q ss_pred CCC
Q 012169 365 DPD 367 (469)
Q Consensus 365 DP~ 367 (469)
+..
T Consensus 62 ~~~ 64 (271)
T PRK03669 62 GLQ 64 (271)
T ss_pred CCC
Confidence 764
No 101
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=93.80 E-value=0.13 Score=49.14 Aligned_cols=94 Identities=10% Similarity=0.081 Sum_probs=60.9
Q ss_pred EEeeCccHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEe--ecceeeeC---Cc----------ccc
Q 012169 326 YVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVY--RESCIFSD---GT----------YTK 389 (469)
Q Consensus 326 yV~lRPgL~eFLe~Lsk-~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~--Re~C~~~~---g~----------yiK 389 (469)
.+.+|||+.+||+++.+ .+.++|.|++...|++++++.+.+...++..++. .+...... .. ..+
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~ 147 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPS 147 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHH
Confidence 36789999999999996 5999999999999999999998654434433332 11111100 00 112
Q ss_pred cccccCCCCCcEEEEECCchhhccCCCcee
Q 012169 390 DLTVLGVDLAKVAIIDNSPQVFRLQVNNGI 419 (469)
Q Consensus 390 DLs~LGrDLskvIIIDDsp~s~~~qpeNgI 419 (469)
-++.++....++|.|-|+..-+......++
T Consensus 148 ~l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~ 177 (214)
T TIGR03333 148 LIRKLSEPNDYHIVIGDSVTDVEAAKQSDL 177 (214)
T ss_pred HHHHHhhcCCcEEEEeCCHHHHHHHHhCCe
Confidence 233445567789999999876544333333
No 102
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=93.71 E-value=0.17 Score=48.10 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=46.3
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCC
Q 012169 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPD 367 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~ 367 (469)
+.+++||||||+.... ...|...+-|+++. +.+.+++.|.-....+.++++.|+..
T Consensus 2 k~v~~DlDGTLl~~~~-----------------------~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~ 58 (215)
T TIGR01487 2 KLVAIDIDGTLTEPNR-----------------------MISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTS 58 (215)
T ss_pred cEEEEecCCCcCCCCc-----------------------ccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCC
Confidence 4789999999996420 24577788888888 55999999999999999999999876
Q ss_pred C
Q 012169 368 G 368 (469)
Q Consensus 368 ~ 368 (469)
+
T Consensus 59 ~ 59 (215)
T TIGR01487 59 G 59 (215)
T ss_pred C
Confidence 4
No 103
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=93.50 E-value=0.18 Score=49.26 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=45.5
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCC
Q 012169 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDP 366 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP 366 (469)
.+.+++||||||++... ..-|...+-|+++. +...++|-|.-....+.++++.+..
T Consensus 3 ~kli~~DlDGTLl~~~~-----------------------~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~ 59 (270)
T PRK10513 3 IKLIAIDMDGTLLLPDH-----------------------TISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHM 59 (270)
T ss_pred eEEEEEecCCcCcCCCC-----------------------ccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCC
Confidence 46899999999997631 12456678888887 5699999999999999999999876
Q ss_pred C
Q 012169 367 D 367 (469)
Q Consensus 367 ~ 367 (469)
.
T Consensus 60 ~ 60 (270)
T PRK10513 60 E 60 (270)
T ss_pred C
Confidence 4
No 104
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=93.33 E-value=0.04 Score=54.34 Aligned_cols=101 Identities=17% Similarity=0.125 Sum_probs=74.4
Q ss_pred EEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeee-----CCcccccccccCCCC-
Q 012169 326 YVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS-----DGTYTKDLTVLGVDL- 398 (469)
Q Consensus 326 yV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~-----~g~yiKDLs~LGrDL- 398 (469)
.++.-||+..++..|. ..-.+.++|.+.+..++..+..+.-.-..|++...-+.-... ...|.+-+++||..+
T Consensus 90 ~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~~~ 169 (222)
T KOG2914|consen 90 NSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVPPP 169 (222)
T ss_pred ccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCCCCc
Confidence 3788899999999999 558999999999999998888876222356666652222222 346788889999988
Q ss_pred CcEEEEECCchhhccCCCceeeeccccC
Q 012169 399 AKVAIIDNSPQVFRLQVNNGIPIESWFD 426 (469)
Q Consensus 399 skvIIIDDsp~s~~~qpeNgIpI~~w~d 426 (469)
+++++++|++........-|.++...-+
T Consensus 170 ~k~lVfeds~~Gv~aa~aagm~vi~v~~ 197 (222)
T KOG2914|consen 170 SKCLVFEDSPVGVQAAKAAGMQVVGVAT 197 (222)
T ss_pred cceEEECCCHHHHHHHHhcCCeEEEecC
Confidence 9999999999877655555555544433
No 105
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=93.26 E-value=0.25 Score=48.05 Aligned_cols=58 Identities=24% Similarity=0.295 Sum_probs=43.7
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCC
Q 012169 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDP 366 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP 366 (469)
.+.+++||||||+.... ...|...+-|+++. +...++|-|.-....+.++++.|..
T Consensus 3 ~kli~~DlDGTLl~~~~-----------------------~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~ 59 (272)
T PRK10530 3 YRVIALDLDGTLLTPKK-----------------------TILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALAL 59 (272)
T ss_pred ccEEEEeCCCceECCCC-----------------------ccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCC
Confidence 36899999999997531 12455667777777 5688999998888888888888876
Q ss_pred CC
Q 012169 367 DG 368 (469)
Q Consensus 367 ~~ 368 (469)
..
T Consensus 60 ~~ 61 (272)
T PRK10530 60 DT 61 (272)
T ss_pred CC
Confidence 53
No 106
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=93.19 E-value=0.22 Score=48.52 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=42.7
Q ss_pred EEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCC
Q 012169 291 LVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPD 367 (469)
Q Consensus 291 LVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~ 367 (469)
+++||||||++... .-|...++|+++. +...+++.|.-+...+..+++.+...
T Consensus 2 i~~DlDGTLl~~~~------------------------~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~ 55 (225)
T TIGR02461 2 IFTDLDGTLLPPGY------------------------EPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVE 55 (225)
T ss_pred EEEeCCCCCcCCCC------------------------CchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 68999999998421 1356889999998 45999999999988888888888753
No 107
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=93.18 E-value=0.2 Score=50.99 Aligned_cols=104 Identities=19% Similarity=0.335 Sum_probs=67.2
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCC---CCCceeEEEee-cceeee--CC----ccccc-----
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDP---DGKLISRRVYR-ESCIFS--DG----TYTKD----- 390 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP---~~klf~~rL~R-e~C~~~--~g----~yiKD----- 390 (469)
+.+|||+.+||++|. ....++|+|+|...+++.+++.+.- ....++.++-- +.-... .+ .+.|.
T Consensus 120 l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~~ 199 (277)
T TIGR01544 120 VMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVAL 199 (277)
T ss_pred CccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHHH
Confidence 778999999999997 4599999999999999999998653 22455555542 221111 11 12221
Q ss_pred --ccccC--CCCCcEEEEECCchhhcc-----CCCceeeeccccCCCCch
Q 012169 391 --LTVLG--VDLAKVAIIDNSPQVFRL-----QVNNGIPIESWFDDPSDC 431 (469)
Q Consensus 391 --Ls~LG--rDLskvIIIDDsp~s~~~-----qpeNgIpI~~w~dd~~D~ 431 (469)
.+.++ .+.++||+|-|+..-..+ +.+|.|.| .|..+.-+.
T Consensus 200 ~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~~~~~~~l~i-gfln~~~e~ 248 (277)
T TIGR01544 200 RNTEYFNQLKDRSNIILLGDSQGDLRMADGVANVEHILKI-GYLNDRVDE 248 (277)
T ss_pred HHHHHhCccCCcceEEEECcChhhhhHhcCCCcccceEEE-EecccCHHH
Confidence 12345 688899999999964422 23454444 454444444
No 108
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=92.93 E-value=0.32 Score=46.19 Aligned_cols=57 Identities=12% Similarity=0.222 Sum_probs=45.3
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCC
Q 012169 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPD 367 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~ 367 (469)
+.+++||||||+.... ...|...+-|+++. +...++|-|.-....+.++++.+...
T Consensus 4 kli~~DlDGTLl~~~~-----------------------~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (230)
T PRK01158 4 KAIAIDIDGTITDKDR-----------------------RLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTS 60 (230)
T ss_pred eEEEEecCCCcCCCCC-----------------------ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC
Confidence 6899999999996521 13567778888888 55899999999999999999888765
Q ss_pred C
Q 012169 368 G 368 (469)
Q Consensus 368 ~ 368 (469)
+
T Consensus 61 ~ 61 (230)
T PRK01158 61 G 61 (230)
T ss_pred C
Confidence 4
No 109
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=92.89 E-value=0.23 Score=47.22 Aligned_cols=54 Identities=22% Similarity=0.234 Sum_probs=43.0
Q ss_pred EEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCC
Q 012169 291 LVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPD 367 (469)
Q Consensus 291 LVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~ 367 (469)
+++||||||+++... .-|-..+.|+.+. +...++|.|.-....+.++++.+...
T Consensus 2 i~~DlDGTLL~~~~~-----------------------~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 2 VFSDLDGTLLDSHSY-----------------------DWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred EEEeCCCCCcCCCCC-----------------------CcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 789999999976310 1223678899888 45899999999999999999998754
No 110
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=92.88 E-value=0.28 Score=46.46 Aligned_cols=96 Identities=20% Similarity=0.282 Sum_probs=63.9
Q ss_pred cCCCCceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhcce---EEEEEcCCc------
Q 012169 283 TQGRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMF---EVVIFTASQ------ 353 (469)
Q Consensus 283 ~~~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk~Y---EIVIfTAs~------ 353 (469)
....+-+.||||+|+||+.-.. -..-|-+.+.++++.+.| .|+|.|++.
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~----------------------~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~ 93 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYE----------------------DEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDP 93 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCc----------------------CcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCc
Confidence 3456778999999999975321 124678888999999765 399999984
Q ss_pred -HHHHHHHHHHhCCCCCceeEEEeecceeeeCCcccccccccC-----CCCCcEEEEECCc
Q 012169 354 -SIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLG-----VDLAKVAIIDNSP 408 (469)
Q Consensus 354 -~~YA~~VLd~LDP~~klf~~rL~Re~C~~~~g~yiKDLs~LG-----rDLskvIIIDDsp 408 (469)
..-|+.+-+.|... .+.|+ + ..++.+-+-++.++ ..++++++|-|+.
T Consensus 94 ~~~~a~~~~~~lgIp--vl~h~-----~-kKP~~~~~i~~~~~~~~~~~~p~eiavIGDrl 146 (168)
T PF09419_consen 94 DGERAEALEKALGIP--VLRHR-----A-KKPGCFREILKYFKCQKVVTSPSEIAVIGDRL 146 (168)
T ss_pred cHHHHHHHHHhhCCc--EEEeC-----C-CCCccHHHHHHHHhhccCCCCchhEEEEcchH
Confidence 67778887877642 23222 1 12233333333332 3588999999987
No 111
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=92.87 E-value=0.12 Score=49.28 Aligned_cols=117 Identities=21% Similarity=0.284 Sum_probs=82.3
Q ss_pred CCCccCCCCceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHH
Q 012169 279 SPKETQGRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYA 357 (469)
Q Consensus 279 ~P~~~~~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA 357 (469)
.|.....++.+.+|+|||+|||-= ... ..-|-+.+-+..+. +.-.++|.+...+.-+
T Consensus 19 ~~~~L~~~Gikgvi~DlDNTLv~w--d~~--------------------~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV 76 (175)
T COG2179 19 TPDILKAHGIKGVILDLDNTLVPW--DNP--------------------DATPELRAWLAELKEAGIKVVVVSNNKESRV 76 (175)
T ss_pred CHHHHHHcCCcEEEEeccCceecc--cCC--------------------CCCHHHHHHHHHHHhcCCEEEEEeCCCHHHH
Confidence 344445678889999999999853 221 12588899999999 5599999999999999
Q ss_pred HHHHHHhCCCCCceeEEEeecceeeeCCcccccccccCCCCCcEEEEECCch--hhccCCCce---eeecccc
Q 012169 358 AQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQ--VFRLQVNNG---IPIESWF 425 (469)
Q Consensus 358 ~~VLd~LDP~~klf~~rL~Re~C~~~~g~yiKDLs~LGrDLskvIIIDDsp~--s~~~qpeNg---IpI~~w~ 425 (469)
..++..||-.. + +|- -.-....+.|-|..++.++++|+.|-|... +...+. .| |.|+|-.
T Consensus 77 ~~~~~~l~v~f--i----~~A-~KP~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr-~G~~tIlV~Pl~ 141 (175)
T COG2179 77 ARAAEKLGVPF--I----YRA-KKPFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNR-AGMRTILVEPLV 141 (175)
T ss_pred HhhhhhcCCce--e----ecc-cCccHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccc-cCcEEEEEEEec
Confidence 99999988652 1 110 000122456778888999999999999983 444333 33 5666654
No 112
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=92.85 E-value=0.22 Score=48.45 Aligned_cols=55 Identities=25% Similarity=0.320 Sum_probs=43.6
Q ss_pred EEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCC
Q 012169 290 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPD 367 (469)
Q Consensus 290 tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~ 367 (469)
.+++||||||+.... ...|...+.|+++. +.+.++|-|......+..+++.+...
T Consensus 1 li~~DlDGTLl~~~~-----------------------~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 1 LIFIDLDGTLLNDDH-----------------------TISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLD 56 (256)
T ss_pred CEEEeCCCCCCCCCC-----------------------ccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 378999999997521 13466778888888 56999999999999998898888765
No 113
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=92.81 E-value=0.024 Score=53.37 Aligned_cols=80 Identities=24% Similarity=0.353 Sum_probs=42.1
Q ss_pred EeeCccHHHHHHHhhcc-eEEEEEcCCcHH-H---HHHHHHHhCCC--CCceeEEEeecceeeeCCcccccccccCCCCC
Q 012169 327 VKQRPHLKTFLERVAEM-FEVVIFTASQSI-Y---AAQLLDILDPD--GKLISRRVYRESCIFSDGTYTKDLTVLGVDLA 399 (469)
Q Consensus 327 V~lRPgL~eFLe~Lsk~-YEIVIfTAs~~~-Y---A~~VLd~LDP~--~klf~~rL~Re~C~~~~g~yiKDLs~LGrDLs 399 (469)
...-||+.+.|++|.+. +++++-|+.... + +..-.+.|+.. +......++.. -|. .++.|
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~---------~K~--~v~~D-- 138 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTG---------DKT--LVGGD-- 138 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEES---------SGG--GC--S--
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEec---------CCC--eEecc--
Confidence 55679999999999976 577777776544 1 22222222211 11122222211 122 34444
Q ss_pred cEEEEECCchhhccCCCceeee
Q 012169 400 KVAIIDNSPQVFRLQVNNGIPI 421 (469)
Q Consensus 400 kvIIIDDsp~s~~~qpeNgIpI 421 (469)
|+|||+|.....-...|+++
T Consensus 139 --vlIDD~~~n~~~~~~~g~~~ 158 (191)
T PF06941_consen 139 --VLIDDRPHNLEQFANAGIPV 158 (191)
T ss_dssp --EEEESSSHHHSS-SSESSEE
T ss_pred --EEecCChHHHHhccCCCceE
Confidence 79999999887666677544
No 114
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=92.48 E-value=0.33 Score=47.77 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=43.6
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCC
Q 012169 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPD 367 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~ 367 (469)
+.+++||||||+.+.. ..-|...+-|+++. +...++|-|.-....+.++++.++..
T Consensus 3 kli~~DlDGTLl~~~~-----------------------~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (272)
T PRK15126 3 RLAAFDMDGTLLMPDH-----------------------HLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLD 59 (272)
T ss_pred cEEEEeCCCcCcCCCC-----------------------cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCC
Confidence 5899999999997521 13455667777877 55888888888888888888888765
Q ss_pred C
Q 012169 368 G 368 (469)
Q Consensus 368 ~ 368 (469)
.
T Consensus 60 ~ 60 (272)
T PRK15126 60 A 60 (272)
T ss_pred C
Confidence 4
No 115
>PRK10976 putative hydrolase; Provisional
Probab=92.41 E-value=0.33 Score=47.41 Aligned_cols=57 Identities=23% Similarity=0.246 Sum_probs=42.4
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCC
Q 012169 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPD 367 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~ 367 (469)
+.+++||||||++... ..-|...+-|+++. +...++|-|.-....+.++++.++..
T Consensus 3 kli~~DlDGTLl~~~~-----------------------~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (266)
T PRK10976 3 QVVASDLDGTLLSPDH-----------------------TLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIK 59 (266)
T ss_pred eEEEEeCCCCCcCCCC-----------------------cCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 5899999999997631 12455666777776 56888888888888888888887655
Q ss_pred C
Q 012169 368 G 368 (469)
Q Consensus 368 ~ 368 (469)
.
T Consensus 60 ~ 60 (266)
T PRK10976 60 S 60 (266)
T ss_pred C
Confidence 3
No 116
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=92.12 E-value=0.34 Score=44.86 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=41.9
Q ss_pred EEEeccccccccccc-ccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHH---HHHHHh
Q 012169 291 LVLDLDETLVHSTLE-YCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAA---QLLDIL 364 (469)
Q Consensus 291 LVLDLDeTLVhSs~~-~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~---~VLd~L 364 (469)
+++|+||||+.+... ... ...+.. +..|++.++++++. +.|.+++.|+.....+. +.+..+
T Consensus 2 VisDIDGTL~~sd~~~~~~----------~~~~~~---~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~ 67 (157)
T smart00775 2 VISDIDGTITKSDVLGHVV----------PIIGKD---WTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQI 67 (157)
T ss_pred EEEecCCCCcccccccccc----------cccccC---cCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHh
Confidence 789999999987411 110 000111 34799999999999 56999999998877765 555553
No 117
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=91.70 E-value=0.37 Score=47.14 Aligned_cols=55 Identities=25% Similarity=0.198 Sum_probs=43.4
Q ss_pred EEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhCCC
Q 012169 290 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPD 367 (469)
Q Consensus 290 tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk-~YEIVIfTAs~~~YA~~VLd~LDP~ 367 (469)
.+++||||||++.... ..|...++++++.+ ...+++-|.-....+..+++.++..
T Consensus 1 li~~DlDGTll~~~~~-----------------------~~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 1 WIFTDLDGTLLDPHGY-----------------------DWGPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLE 56 (256)
T ss_pred CEEEcCCCCCcCCCCc-----------------------CchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 3789999999986310 12357889999985 5899999999999999999998743
No 118
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.70 E-value=0.23 Score=54.14 Aligned_cols=126 Identities=17% Similarity=0.249 Sum_probs=72.1
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceec-eEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHH
Q 012169 285 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEH-TVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLD 362 (469)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~-~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd 362 (469)
.+.++.||||||+||.--.. ..+=.-.+.+..... .-| --+.+|...+. +.+=+.|.+-....-|..+..
T Consensus 219 g~~kK~LVLDLDNTLWGGVI----GedGv~GI~Ls~~~~G~~f----k~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~ 290 (574)
T COG3882 219 GKSKKALVLDLDNTLWGGVI----GEDGVDGIRLSNSAEGEAF----KTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFR 290 (574)
T ss_pred CcccceEEEecCCccccccc----ccccccceeecCCCCchhH----HHHHHHHHHHHhccEEEEEecCCchhhHHHHHh
Confidence 45678999999999955432 111111122211100 000 02455566666 668888888888888887765
Q ss_pred HhCCCCCceeEEEeec------ceeeeC--CcccccccccCCCCCcEEEEECCchhhccCCCce-eeecccc
Q 012169 363 ILDPDGKLISRRVYRE------SCIFSD--GTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNG-IPIESWF 425 (469)
Q Consensus 363 ~LDP~~klf~~rL~Re------~C~~~~--g~yiKDLs~LGrDLskvIIIDDsp~s~~~qpeNg-IpI~~w~ 425 (469)
+- | +-+.++ .|.+.+ .+..|-.++|+-.+.-.|+|||+|.....-..++ +.|.++-
T Consensus 291 kh-p------~MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmvFiDD~p~ErE~vk~~~~v~Vi~~~ 355 (574)
T COG3882 291 KH-P------DMILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMVFIDDNPAERELVKRELPVSVIEFP 355 (574)
T ss_pred hC-C------CeEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceEEecCCHHHHHHHHhcCceeeccCC
Confidence 42 1 112222 222221 2445677788999999999999997664333333 4455543
No 119
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=91.55 E-value=0.6 Score=42.20 Aligned_cols=49 Identities=16% Similarity=0.331 Sum_probs=41.5
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEe
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVY 376 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~ 376 (469)
+..+|++.++|+++. +.+.++|.|++.+.|++++++.+.... +|..++.
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~-~~~~~~~ 121 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDD-VFANRLE 121 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCch-heeeeEE
Confidence 567999999999997 569999999999999999999987653 5665554
No 120
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=91.32 E-value=0.39 Score=44.96 Aligned_cols=54 Identities=31% Similarity=0.375 Sum_probs=43.1
Q ss_pred EEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhC
Q 012169 290 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILD 365 (469)
Q Consensus 290 tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk~-YEIVIfTAs~~~YA~~VLd~LD 365 (469)
.+++|+||||+.... ....|.+.+.|+++.+. ..++|.|.....++..+++.++
T Consensus 1 li~~D~DgTL~~~~~----------------------~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~ 55 (204)
T TIGR01484 1 LLFFDLDGTLLDPNA----------------------HELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQLP 55 (204)
T ss_pred CEEEeCcCCCcCCCC----------------------CcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCC
Confidence 378999999997420 01358888999999854 8999999999999999998753
No 121
>PRK10444 UMP phosphatase; Provisional
Probab=91.04 E-value=0.32 Score=48.27 Aligned_cols=54 Identities=22% Similarity=0.360 Sum_probs=42.5
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCC
Q 012169 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDP 366 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP 366 (469)
+.+++||||||++.. ..=|+..++|+++. +...+++.|.....-+..+++.|.-
T Consensus 2 ~~v~~DlDGtL~~~~------------------------~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~ 56 (248)
T PRK10444 2 KNVICDIDGVLMHDN------------------------VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFAT 56 (248)
T ss_pred cEEEEeCCCceEeCC------------------------eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 378999999998863 12589999999998 5689999999888766677666643
No 122
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=90.81 E-value=0.58 Score=44.18 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=40.5
Q ss_pred EEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCC
Q 012169 291 LVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDP 366 (469)
Q Consensus 291 LVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP 366 (469)
+++||||||+++.. ...|-..+-|+++. +...+++-|.-....+.++++.+..
T Consensus 1 i~~DlDGTLl~~~~-----------------------~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~ 54 (225)
T TIGR01482 1 IASDIDGTLTDPNR-----------------------AINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGT 54 (225)
T ss_pred CeEeccCccCCCCc-----------------------ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCC
Confidence 58999999997631 12455667777777 5589999999888888888888873
No 123
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=90.80 E-value=0.38 Score=49.27 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=41.1
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhc-----ceEEEEEcCCc----HHHHHH
Q 012169 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-----MFEVVIFTASQ----SIYAAQ 359 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk-----~YEIVIfTAs~----~~YA~~ 359 (469)
+.++||+||||+++. ..-|++.++|+.+.. ...++++|+.. +.+++.
T Consensus 1 ~~~ifD~DGvL~~g~------------------------~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~ 56 (321)
T TIGR01456 1 FGFAFDIDGVLFRGK------------------------KPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEE 56 (321)
T ss_pred CEEEEeCcCceECCc------------------------cccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHH
Confidence 368999999999873 126899999999996 78889999775 567777
Q ss_pred HHHHhC
Q 012169 360 LLDILD 365 (469)
Q Consensus 360 VLd~LD 365 (469)
+.+.+.
T Consensus 57 l~~~lG 62 (321)
T TIGR01456 57 ISSLLG 62 (321)
T ss_pred HHHHcC
Confidence 756554
No 124
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=90.31 E-value=0.19 Score=48.83 Aligned_cols=89 Identities=10% Similarity=0.113 Sum_probs=62.1
Q ss_pred EeeCccHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeee---CCcccccccccCCCCCcEEE
Q 012169 327 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVAI 403 (469)
Q Consensus 327 V~lRPgL~eFLe~Lsk~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~---~g~yiKDLs~LGrDLskvII 403 (469)
+..-||+.++|++|.+.|.++|.|++... ++.++-. .+|+..+..+..... ...|.+-++.+|.+++++++
T Consensus 112 ~~~~~gv~~~L~~L~~~~~l~i~Tn~~~~-----~~~~gl~-~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~ 185 (238)
T PRK10748 112 IDVPQATHDTLKQLAKKWPLVAITNGNAQ-----PELFGLG-DYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEILH 185 (238)
T ss_pred CCCCccHHHHHHHHHcCCCEEEEECCCch-----HHHCCcH-HhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHEEE
Confidence 44558999999999988999999998865 2444433 478777765443222 22456667788999999999
Q ss_pred EECCc-hhhccCCCceeee
Q 012169 404 IDNSP-QVFRLQVNNGIPI 421 (469)
Q Consensus 404 IDDsp-~s~~~qpeNgIpI 421 (469)
|-|++ .-......+|+..
T Consensus 186 VGD~~~~Di~~A~~aG~~~ 204 (238)
T PRK10748 186 VGDDLTTDVAGAIRCGMQA 204 (238)
T ss_pred EcCCcHHHHHHHHHCCCeE
Confidence 98884 4443344566654
No 125
>PTZ00174 phosphomannomutase; Provisional
Probab=90.27 E-value=0.65 Score=45.51 Aligned_cols=52 Identities=19% Similarity=0.253 Sum_probs=37.4
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHH
Q 012169 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLD 362 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd 362 (469)
.+.+++||||||+++.. ..-|...+-|+++. +...++|-|.-...-+.+.++
T Consensus 5 ~klia~DlDGTLL~~~~-----------------------~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 5 KTILLFDVDGTLTKPRN-----------------------PITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred CeEEEEECcCCCcCCCC-----------------------CCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 56899999999998741 12466777788887 558888888876654544444
No 126
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=90.21 E-value=0.38 Score=47.87 Aligned_cols=49 Identities=18% Similarity=0.326 Sum_probs=41.4
Q ss_pred EeeCccHHHHHHHhh---cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEe
Q 012169 327 VKQRPHLKTFLERVA---EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVY 376 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls---k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~ 376 (469)
+..-||..+|++.++ ..++++|-|.|..-|-+.+|++-+-.+ .|+.++.
T Consensus 70 ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~-~f~~I~T 121 (234)
T PF06888_consen 70 IPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRD-CFSEIFT 121 (234)
T ss_pred CCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCcc-ccceEEe
Confidence 778999999999995 379999999999999999999988764 5554444
No 127
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=89.88 E-value=0.37 Score=47.75 Aligned_cols=47 Identities=17% Similarity=0.154 Sum_probs=34.7
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHH
Q 012169 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSI 355 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~ 355 (469)
++++|||||||++..... =..=|+..++|+++. +...+++.|.....
T Consensus 2 k~i~~D~DGtl~~~~~~~--------------------~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~ 49 (257)
T TIGR01458 2 KGVLLDISGVLYISDAKS--------------------GVAVPGSQEAVKRLRGASVKVRFVTNTTKE 49 (257)
T ss_pred CEEEEeCCCeEEeCCCcc--------------------cCcCCCHHHHHHHHHHCCCeEEEEECCCCC
Confidence 478999999998763100 002589999999999 56999999975544
No 128
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=89.70 E-value=0.7 Score=46.16 Aligned_cols=59 Identities=15% Similarity=0.075 Sum_probs=42.5
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhc--ceEEEEEcCCcHHHHHHHHHHh
Q 012169 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE--MFEVVIFTASQSIYAAQLLDIL 364 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk--~YEIVIfTAs~~~YA~~VLd~L 364 (469)
+..|++|+||||+.....+.. ...-|.+.+-|+.|++ ...++|.|.-...-+..+++.+
T Consensus 14 ~~li~~D~DGTLl~~~~~p~~------------------~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~ 74 (266)
T PRK10187 14 NYAWFFDLDGTLAEIKPHPDQ------------------VVVPDNILQGLQLLATANDGALALISGRSMVELDALAKPY 74 (266)
T ss_pred CEEEEEecCCCCCCCCCCccc------------------ccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCcc
Confidence 679999999999975322211 1234788888999885 5788888888888777776544
No 129
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=89.43 E-value=0.44 Score=47.63 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=68.2
Q ss_pred EEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecc---------------eeeeCCc---
Q 012169 326 YVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRES---------------CIFSDGT--- 386 (469)
Q Consensus 326 yV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~---------------C~~~~g~--- 386 (469)
+...=|.+-++++.+. +..-++..|+....+...-++.|---|--|+...+++. -.+.+|.
T Consensus 79 ~~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft 158 (252)
T PF11019_consen 79 MELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFT 158 (252)
T ss_pred eEEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEe
Confidence 3556789999999999 67999999999999999988887554433333322111 1122231
Q ss_pred --------ccccccccCCCCCcEEEEECCchhh----ccCCCceeeeccccC
Q 012169 387 --------YTKDLTVLGVDLAKVAIIDNSPQVF----RLQVNNGIPIESWFD 426 (469)
Q Consensus 387 --------yiKDLs~LGrDLskvIIIDDsp~s~----~~qpeNgIpI~~w~d 426 (469)
...=|..+|+.++++|+|||+.... ..-...+|....++-
T Consensus 159 ~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Y 210 (252)
T PF11019_consen 159 GGQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHY 210 (252)
T ss_pred CCCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEE
Confidence 1222456799999999999999755 222347777777754
No 130
>PLN02645 phosphoglycolate phosphatase
Probab=89.38 E-value=0.43 Score=48.63 Aligned_cols=53 Identities=15% Similarity=0.078 Sum_probs=39.9
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHh
Q 012169 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDIL 364 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~L 364 (469)
-++++||+||||++.. . .=||+.++|+++. +...+++.|+....-...+++.|
T Consensus 28 ~~~~~~D~DGtl~~~~----------------------~--~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l 81 (311)
T PLN02645 28 VETFIFDCDGVIWKGD----------------------K--LIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKF 81 (311)
T ss_pred CCEEEEeCcCCeEeCC----------------------c--cCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence 4589999999998752 0 1289999999998 67999999998855555555444
No 131
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=89.09 E-value=0.96 Score=46.71 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=43.5
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCC
Q 012169 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPD 367 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~ 367 (469)
+.+++||||||+.... | .-+-..+-|+++. +...+++.|+-+..-+..+.+.|...
T Consensus 2 KLIftDLDGTLLd~~~---------------------~--~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 2 RLVLSSLDGSLLDLEF---------------------N--SYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLE 58 (302)
T ss_pred cEEEEeCCCCCcCCCC---------------------c--CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 5789999999997531 1 1234677788888 55999999999888888888888765
Q ss_pred C
Q 012169 368 G 368 (469)
Q Consensus 368 ~ 368 (469)
.
T Consensus 59 ~ 59 (302)
T PRK12702 59 H 59 (302)
T ss_pred C
Confidence 3
No 132
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=88.98 E-value=0.61 Score=46.53 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=32.6
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCc
Q 012169 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQ 353 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~ 353 (469)
..+++|+||||++.. ..-|++.++|+++. +...+++.|+..
T Consensus 3 ~~~~~D~DGtl~~~~------------------------~~~~ga~e~l~~L~~~g~~~~~~Tnns 44 (279)
T TIGR01452 3 QGFIFDCDGVLWLGE------------------------RVVPGAPELLDRLARAGKAALFVTNNS 44 (279)
T ss_pred cEEEEeCCCceEcCC------------------------eeCcCHHHHHHHHHHCCCeEEEEeCCC
Confidence 478999999997752 12588999999998 468999999854
No 133
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=88.13 E-value=0.73 Score=42.87 Aligned_cols=84 Identities=25% Similarity=0.284 Sum_probs=56.5
Q ss_pred EeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEee-cceeee---CC--cc--ccc--c----
Q 012169 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYR-ESCIFS---DG--TY--TKD--L---- 391 (469)
Q Consensus 327 V~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~R-e~C~~~---~g--~y--iKD--L---- 391 (469)
...+|++.++|+++. +.+.++|.|++...+++++++.+.-.. +|..++.. +.-.+. .| .+ .|- +
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~-~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~ 164 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDN-AIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELL 164 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcc-eEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHH
Confidence 357999999999998 569999999999999999999988765 66654432 110111 01 00 011 2
Q ss_pred cccCCCCCcEEEEECCchhh
Q 012169 392 TVLGVDLAKVAIIDNSPQVF 411 (469)
Q Consensus 392 s~LGrDLskvIIIDDsp~s~ 411 (469)
...+.++++++.+-|++.-.
T Consensus 165 ~~~~~~~~~~~~~gDs~~D~ 184 (202)
T TIGR01490 165 AEEQIDLKDSYAYGDSISDL 184 (202)
T ss_pred HHcCCCHHHcEeeeCCcccH
Confidence 23466777888888877544
No 134
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=87.94 E-value=0.5 Score=44.18 Aligned_cols=85 Identities=19% Similarity=0.258 Sum_probs=49.6
Q ss_pred EeeCccHHHHHHHhhcceEEEEEcCCcHHHH--HHHHHHhCCCCCce--eEEEeecceeeeCCcccccccccCCCCCcEE
Q 012169 327 VKQRPHLKTFLERVAEMFEVVIFTASQSIYA--AQLLDILDPDGKLI--SRRVYRESCIFSDGTYTKDLTVLGVDLAKVA 402 (469)
Q Consensus 327 V~lRPgL~eFLe~Lsk~YEIVIfTAs~~~YA--~~VLd~LDP~~klf--~~rL~Re~C~~~~g~yiKDLs~LGrDLskvI 402 (469)
...-||.++-+++|-++|+|+|-||++..|- +.-.+.|--.-.++ ++.+++ . .|++-+. =+
T Consensus 67 L~V~p~aq~v~keLt~~y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~vfC-----g----nKnivka------Di 131 (180)
T COG4502 67 LGVQPFAQTVLKELTSIYNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNIVFC-----G----NKNIVKA------DI 131 (180)
T ss_pred cCccccHHHHHHHHHhhheEEEEEeccCCchhHHHHHHHHHHHCCCCChhhEEEe-----c----CCCeEEe------eE
Confidence 5667999999999999999999999954332 22222221100011 122221 1 1222111 36
Q ss_pred EEECCchhhccCCCceeeeccccC
Q 012169 403 IIDNSPQVFRLQVNNGIPIESWFD 426 (469)
Q Consensus 403 IIDDsp~s~~~qpeNgIpI~~w~d 426 (469)
+|||.|........|-|.-..-++
T Consensus 132 lIDDnp~nLE~F~G~kIlFdA~HN 155 (180)
T COG4502 132 LIDDNPLNLENFKGNKILFDAHHN 155 (180)
T ss_pred EecCCchhhhhccCceEEEecccc
Confidence 899999877666666666555444
No 135
>PLN02423 phosphomannomutase
Probab=87.22 E-value=1.3 Score=43.58 Aligned_cols=54 Identities=19% Similarity=0.344 Sum_probs=35.9
Q ss_pred CceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHhCC
Q 012169 287 KSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDP 366 (469)
Q Consensus 287 kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk~YEIVIfTAs~~~YA~~VLd~LDP 366 (469)
.+..+++||||||+.+.. .+-|...+-|+++.+...+++.|.-.- ..+.+.+.+
T Consensus 6 ~~~i~~~D~DGTLl~~~~-----------------------~i~~~~~~ai~~l~~~i~fviaTGR~~---~~~~~~~~~ 59 (245)
T PLN02423 6 PGVIALFDVDGTLTAPRK-----------------------EATPEMLEFMKELRKVVTVGVVGGSDL---SKISEQLGK 59 (245)
T ss_pred cceEEEEeccCCCcCCCC-----------------------cCCHHHHHHHHHHHhCCEEEEECCcCH---HHHHHHhcc
Confidence 345666999999997631 124667788888987777777776532 244455544
No 136
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=86.26 E-value=2.3 Score=48.46 Aligned_cols=60 Identities=18% Similarity=0.132 Sum_probs=45.7
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHH
Q 012169 285 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDI 363 (469)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~ 363 (469)
..+++.+++||||||++... ++. +...+-|+.+. +...+++.|.-....+..+++.
T Consensus 413 ~~~~KLIfsDLDGTLLd~d~---------------------~i~--~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~ 469 (694)
T PRK14502 413 GQFKKIVYTDLDGTLLNPLT---------------------YSY--STALDALRLLKDKELPLVFCSAKTMGEQDLYRNE 469 (694)
T ss_pred CceeeEEEEECcCCCcCCCC---------------------ccC--HHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHH
Confidence 46778999999999998631 111 23456677777 5699999999999999999998
Q ss_pred hCCC
Q 012169 364 LDPD 367 (469)
Q Consensus 364 LDP~ 367 (469)
|+..
T Consensus 470 Lgl~ 473 (694)
T PRK14502 470 LGIK 473 (694)
T ss_pred cCCC
Confidence 8754
No 137
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=86.03 E-value=1.3 Score=43.18 Aligned_cols=60 Identities=25% Similarity=0.081 Sum_probs=40.1
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhcce-EEEEEcCCcHHHHHHHHHHhCC
Q 012169 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMF-EVVIFTASQSIYAAQLLDILDP 366 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk~Y-EIVIfTAs~~~YA~~VLd~LDP 366 (469)
++.++.||||||+.+.... -...|.+.+.++++.+.. .+++-|.-+..-+.++++.+.+
T Consensus 1 ~~li~tDlDGTLl~~~~~~--------------------~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~ 60 (249)
T TIGR01485 1 RLLLVSDLDNTLVDHTDGD--------------------NQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPL 60 (249)
T ss_pred CeEEEEcCCCcCcCCCCCC--------------------hHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCC
Confidence 4678999999999632000 123578888888877554 6666677666667777666654
Q ss_pred C
Q 012169 367 D 367 (469)
Q Consensus 367 ~ 367 (469)
.
T Consensus 61 ~ 61 (249)
T TIGR01485 61 L 61 (249)
T ss_pred C
Confidence 3
No 138
>PLN02887 hydrolase family protein
Probab=85.90 E-value=1.6 Score=48.76 Aligned_cols=59 Identities=22% Similarity=0.200 Sum_probs=45.9
Q ss_pred CCceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHh
Q 012169 286 RKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDIL 364 (469)
Q Consensus 286 ~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~L 364 (469)
.+.+.+++||||||+++.. ..-|...+-|+++. +...++|-|.-...-+..+++.+
T Consensus 306 ~~iKLIa~DLDGTLLn~d~-----------------------~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L 362 (580)
T PLN02887 306 PKFSYIFCDMDGTLLNSKS-----------------------QISETNAKALKEALSRGVKVVIATGKARPAVIDILKMV 362 (580)
T ss_pred cCccEEEEeCCCCCCCCCC-----------------------ccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHh
Confidence 3567899999999997631 12455667788887 66999999999998888999988
Q ss_pred CCC
Q 012169 365 DPD 367 (469)
Q Consensus 365 DP~ 367 (469)
+..
T Consensus 363 ~l~ 365 (580)
T PLN02887 363 DLA 365 (580)
T ss_pred Ccc
Confidence 753
No 139
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=85.88 E-value=1.5 Score=46.04 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=44.3
Q ss_pred eEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHh-C------CCCCceeEEEe
Q 012169 324 TVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDIL-D------PDGKLISRRVY 376 (469)
Q Consensus 324 ~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~L-D------P~~klf~~rL~ 376 (469)
.-||.+-|++.++|+++. +...+.|-|++...|++.+++.+ + .+..+|+.++.
T Consensus 180 ~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt 240 (343)
T TIGR02244 180 EKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIV 240 (343)
T ss_pred HHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEe
Confidence 457888999999999998 56999999999999999999997 4 34567765554
No 140
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=85.73 E-value=1.2 Score=43.94 Aligned_cols=53 Identities=21% Similarity=0.329 Sum_probs=36.0
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCc---HHHHHHHHHHh
Q 012169 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQ---SIYAAQLLDIL 364 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~---~~YA~~VLd~L 364 (469)
..+++|+||||++... .=|+..++|+++. +...+++.|... ..-..+.++.+
T Consensus 2 ~~~~~D~DGtl~~~~~------------------------~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~ 57 (249)
T TIGR01457 2 KGYLIDLDGTMYKGKE------------------------RIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASF 57 (249)
T ss_pred CEEEEeCCCceEcCCe------------------------eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHc
Confidence 3789999999987520 1368899999998 558888888633 33333344444
Q ss_pred C
Q 012169 365 D 365 (469)
Q Consensus 365 D 365 (469)
.
T Consensus 58 g 58 (249)
T TIGR01457 58 D 58 (249)
T ss_pred C
Confidence 4
No 141
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=82.95 E-value=1.5 Score=44.56 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=39.5
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHh
Q 012169 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDIL 364 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk~-YEIVIfTAs~~~YA~~VLd~L 364 (469)
..++++||||||++-. ..=||+.+||+++.+. -.+++-|++..+-.+.+..+|
T Consensus 8 y~~~l~DlDGvl~~G~------------------------~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L 61 (269)
T COG0647 8 YDGFLFDLDGVLYRGN------------------------EAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARL 61 (269)
T ss_pred cCEEEEcCcCceEeCC------------------------ccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 4578999999998763 2359999999999955 888888988765444444333
No 142
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=82.65 E-value=1.4 Score=44.60 Aligned_cols=80 Identities=20% Similarity=0.216 Sum_probs=42.4
Q ss_pred CCCceEEEEeccccccccccc----ccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhcceEEEEE-cCCcHHH-HH
Q 012169 285 GRKSVTLVLDLDETLVHSTLE----YCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIF-TASQSIY-AA 358 (469)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~----~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk~YEIVIf-TAs~~~Y-A~ 358 (469)
+.|++.+|+|||||.+..+.. -.....|+-. ..+---..---+.=||+.+||+++-++--.|.| |.-.+.- .+
T Consensus 76 k~K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe-~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~ 154 (274)
T COG2503 76 KGKKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPE-TWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKD 154 (274)
T ss_pred cCCCceEEEecchHhhcCccccchhhhcCCCCCcc-chHHHHhhcccccCccHHHHHHHHHhcCcEEEEEeccchhcccc
Confidence 456669999999999987521 1111112100 000000000145569999999999976544444 4444444 34
Q ss_pred HHHHHhC
Q 012169 359 QLLDILD 365 (469)
Q Consensus 359 ~VLd~LD 365 (469)
.-++-|-
T Consensus 155 ~T~~nLk 161 (274)
T COG2503 155 GTIENLK 161 (274)
T ss_pred hhHHHHH
Confidence 4444443
No 143
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=82.13 E-value=3.8 Score=40.76 Aligned_cols=91 Identities=12% Similarity=0.105 Sum_probs=53.9
Q ss_pred CCceEEEEecccccccccccccCCCCceEEEEecceec-----eEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHH
Q 012169 286 RKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEH-----TVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQ 359 (469)
Q Consensus 286 ~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~-----~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~ 359 (469)
.+|..+|||+|||++....-.. ...|.-. .++.... .---..-|++.+|++++. +.++|++.|.-.......
T Consensus 75 dg~~A~V~DIDET~LsN~py~~-~~~~g~~-~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~ 152 (229)
T TIGR01675 75 DGMDAWIFDVDDTLLSNIPYYK-KHGYGTE-KTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNA 152 (229)
T ss_pred CCCcEEEEccccccccCHHHHH-HhccCCC-cCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHH
Confidence 5778999999999998752110 0011000 0000000 001345799999999987 679999999998877555
Q ss_pred HHHHhCCCCCc-eeEEEeec
Q 012169 360 LLDILDPDGKL-ISRRVYRE 378 (469)
Q Consensus 360 VLd~LDP~~kl-f~~rL~Re 378 (469)
.++.|.-.|-. +.+.+.|.
T Consensus 153 T~~nL~~~G~~~~~~LiLR~ 172 (229)
T TIGR01675 153 TLDNLINAGFTGWKHLILRG 172 (229)
T ss_pred HHHHHHHcCCCCcCeeeecC
Confidence 55555444411 24445554
No 144
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=80.07 E-value=2.1 Score=41.84 Aligned_cols=50 Identities=26% Similarity=0.323 Sum_probs=37.2
Q ss_pred EEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhc-ceEEEEEcCCc----HHHHHHHHHHh
Q 012169 291 LVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQ----SIYAAQLLDIL 364 (469)
Q Consensus 291 LVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk-~YEIVIfTAs~----~~YA~~VLd~L 364 (469)
++||+||||+.... .=|++.++|+.+.+ .+.+++.|.+. ..+++.+.+.+
T Consensus 1 ~lfD~DGvL~~~~~------------------------~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~ 55 (236)
T TIGR01460 1 FLFDIDGVLWLGHK------------------------PIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLL 55 (236)
T ss_pred CEEeCcCccCcCCc------------------------cCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 47999999988631 13688999999985 58899988544 56777776643
No 145
>PLN02151 trehalose-phosphatase
Probab=79.98 E-value=3.2 Score=43.81 Aligned_cols=60 Identities=15% Similarity=0.187 Sum_probs=45.5
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhcceEEEEEcCCcHHHHHHHHH
Q 012169 285 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLD 362 (469)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk~YEIVIfTAs~~~YA~~VLd 362 (469)
..++..|+||+||||+--...+ -.+..-|.+.+-|+.|++.+.++|-|.-...-.+.++.
T Consensus 95 ~~~~~ll~lDyDGTL~PIv~~P------------------~~A~~~~~~~~aL~~La~~~~vaIvSGR~~~~l~~~~~ 154 (354)
T PLN02151 95 EGKQIVMFLDYDGTLSPIVDDP------------------DRAFMSKKMRNTVRKLAKCFPTAIVSGRCREKVSSFVK 154 (354)
T ss_pred cCCceEEEEecCccCCCCCCCc------------------ccccCCHHHHHHHHHHhcCCCEEEEECCCHHHHHHHcC
Confidence 4567899999999998432111 12345789999999999989999999888877777664
No 146
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=79.68 E-value=0.84 Score=45.50 Aligned_cols=40 Identities=18% Similarity=0.458 Sum_probs=35.2
Q ss_pred EeeCccHHHHHHHhhcc--eEEEEEcCCcHHHHHHHHHHhCC
Q 012169 327 VKQRPHLKTFLERVAEM--FEVVIFTASQSIYAAQLLDILDP 366 (469)
Q Consensus 327 V~lRPgL~eFLe~Lsk~--YEIVIfTAs~~~YA~~VLd~LDP 366 (469)
+-.-||+-+.++.+++. ||++|-+-+..-+.+.+|++.+-
T Consensus 83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~ 124 (256)
T KOG3120|consen 83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGI 124 (256)
T ss_pred CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccH
Confidence 55679999999999854 89999999999999999999764
No 147
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=78.92 E-value=1.8 Score=42.37 Aligned_cols=48 Identities=19% Similarity=0.171 Sum_probs=32.7
Q ss_pred CceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhcceEEE--EEcCC
Q 012169 287 KSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVV--IFTAS 352 (469)
Q Consensus 287 kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk~YEIV--IfTAs 352 (469)
|+..|+||+||||+-....+. .+..=|.+.+.|+.|++....+ |-|.-
T Consensus 2 ~~~~l~lD~DGTL~~~~~~p~------------------~~~~~~~~~~~L~~L~~~~~~~v~ivSGR 51 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIVPDPD------------------AAVVSDRLLTILQKLAARPHNAIWIISGR 51 (244)
T ss_pred CcEEEEEecCccccCCcCCCc------------------ccCCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 567899999999986421110 1234588999999999876544 44544
No 148
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=78.73 E-value=3.9 Score=41.54 Aligned_cols=61 Identities=20% Similarity=0.161 Sum_probs=46.9
Q ss_pred CCCCceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhcceE--EEEEcCCcHHHHHHHH
Q 012169 284 QGRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFE--VVIFTASQSIYAAQLL 361 (469)
Q Consensus 284 ~~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk~YE--IVIfTAs~~~YA~~VL 361 (469)
...++.+++||.||||++....+.. +..=+++.+.|..|+..+. ++|.|.-...-.+..+
T Consensus 14 ~~a~~~~~~lDyDGTl~~i~~~p~~------------------a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~ 75 (266)
T COG1877 14 LNARKRLLFLDYDGTLTEIVPHPEA------------------AVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLF 75 (266)
T ss_pred ccccceEEEEeccccccccccCccc------------------cCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhc
Confidence 3567789999999999987543321 3345788999999998888 7788888887777776
Q ss_pred H
Q 012169 362 D 362 (469)
Q Consensus 362 d 362 (469)
.
T Consensus 76 ~ 76 (266)
T COG1877 76 G 76 (266)
T ss_pred C
Confidence 6
No 149
>PLN02580 trehalose-phosphatase
Probab=78.66 E-value=3.8 Score=43.74 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=47.6
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhcceEEEEEcCCcHHHHHHHHHH
Q 012169 285 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDI 363 (469)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk~YEIVIfTAs~~~YA~~VLd~ 363 (469)
..++..|+||.||||+--...+ --+..=|.+.+-|+.|++.+.++|-|.-...-.+.++..
T Consensus 116 ~~k~~~LfLDyDGTLaPIv~~P------------------d~A~~s~~~~~aL~~La~~~~VAIVSGR~~~~L~~~l~~ 176 (384)
T PLN02580 116 KGKKIALFLDYDGTLSPIVDDP------------------DRALMSDAMRSAVKNVAKYFPTAIISGRSRDKVYELVGL 176 (384)
T ss_pred hcCCeEEEEecCCccCCCCCCc------------------ccccCCHHHHHHHHHHhhCCCEEEEeCCCHHHHHHHhCC
Confidence 4567899999999997533111 124556899999999999999999999998888877753
No 150
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=78.38 E-value=5.3 Score=39.04 Aligned_cols=42 Identities=17% Similarity=0.335 Sum_probs=37.7
Q ss_pred EeeCccHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhCCCC
Q 012169 327 VKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILDPDG 368 (469)
Q Consensus 327 V~lRPgL~eFLe~Lsk~-YEIVIfTAs~~~YA~~VLd~LDP~~ 368 (469)
++.|||.++|.+++.++ -.++|-++|+..|..+++..+--+.
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke 114 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKE 114 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhcccc
Confidence 88999999999999955 8999999999999999999886443
No 151
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=78.35 E-value=1.2 Score=40.72 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=14.1
Q ss_pred ceEEEEeccccccccc
Q 012169 288 SVTLVLDLDETLVHST 303 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs 303 (469)
.+.++||+||||++|.
T Consensus 5 ~~~viFD~DGTLiDs~ 20 (188)
T PRK10725 5 YAGLIFDMDGTILDTE 20 (188)
T ss_pred ceEEEEcCCCcCccCH
Confidence 4689999999999986
No 152
>PRK11587 putative phosphatase; Provisional
Probab=77.80 E-value=1.2 Score=42.40 Aligned_cols=16 Identities=44% Similarity=0.561 Sum_probs=14.1
Q ss_pred ceEEEEeccccccccc
Q 012169 288 SVTLVLDLDETLVHST 303 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs 303 (469)
.++++|||||||+++.
T Consensus 3 ~k~viFDlDGTL~Ds~ 18 (218)
T PRK11587 3 CKGFLFDLDGTLVDSL 18 (218)
T ss_pred CCEEEEcCCCCcCcCH
Confidence 3589999999999996
No 153
>PLN03017 trehalose-phosphatase
Probab=77.48 E-value=4.2 Score=43.14 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=44.2
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhcceEEEEEcCCcHHHHHHHHH
Q 012169 285 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLD 362 (469)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk~YEIVIfTAs~~~YA~~VLd 362 (469)
..++..|+||+||||+--...+ + ....-|.+.+-|++|++.+.++|-|.-...-+..+++
T Consensus 108 ~~k~~llflD~DGTL~Piv~~p----~--------------~a~i~~~~~~aL~~La~~~~vaIvSGR~~~~l~~~~~ 167 (366)
T PLN03017 108 RGKQIVMFLDYDGTLSPIVDDP----D--------------KAFMSSKMRRTVKKLAKCFPTAIVTGRCIDKVYNFVK 167 (366)
T ss_pred cCCCeEEEEecCCcCcCCcCCc----c--------------cccCCHHHHHHHHHHhcCCcEEEEeCCCHHHHHHhhc
Confidence 4567899999999998321100 0 0134578889999999999999999988887777743
No 154
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=76.70 E-value=2.8 Score=38.63 Aligned_cols=79 Identities=19% Similarity=0.191 Sum_probs=58.2
Q ss_pred EEeeCccHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecce-eeeCCcccccccccCCCCCcEEE
Q 012169 326 YVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESC-IFSDGTYTKDLTVLGVDLAKVAI 403 (469)
Q Consensus 326 yV~lRPgL~eFLe~Lsk~-YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C-~~~~g~yiKDLs~LGrDLskvII 403 (469)
.-..||++.++|++|.+. +.++|.|......|..+.+.+.... ..++.+.+ ...+..+.+-++.|+.+.+.|+.
T Consensus 125 ~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~----~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~~ 200 (215)
T PF00702_consen 125 RDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFD----SIVFARVIGKPEPKIFLRIIKELQVKPGEVAM 200 (215)
T ss_dssp EEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCS----EEEEESHETTTHHHHHHHHHHHHTCTGGGEEE
T ss_pred cCcchhhhhhhhhhhhccCcceeeeecccccccccccccccccc----ccccccccccccchhHHHHHHHHhcCCCEEEE
Confidence 456799999999999965 9999999999999999999998743 22332211 11111334555667888889999
Q ss_pred EECCc
Q 012169 404 IDNSP 408 (469)
Q Consensus 404 IDDsp 408 (469)
|-|..
T Consensus 201 vGDg~ 205 (215)
T PF00702_consen 201 VGDGV 205 (215)
T ss_dssp EESSG
T ss_pred EccCH
Confidence 99986
No 155
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=74.62 E-value=5.8 Score=43.98 Aligned_cols=85 Identities=15% Similarity=0.130 Sum_probs=57.3
Q ss_pred EEeeCccHHHHHHHhhc-ceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceee-eCCcccccccccCCCCCcEEE
Q 012169 326 YVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIF-SDGTYTKDLTVLGVDLAKVAI 403 (469)
Q Consensus 326 yV~lRPgL~eFLe~Lsk-~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~-~~g~yiKDLs~LGrDLskvII 403 (469)
.-..||++.++|+++.+ .++++|-|...+.+|+.+++.+.-+ +|. .+.. .+...++ .+....++++.
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~--~~~------~~~p~~K~~~v~---~l~~~~~~v~~ 471 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN--VRA------EVLPDDKAALIK---ELQEKGRVVAM 471 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc--EEc------cCChHHHHHHHH---HHHHcCCEEEE
Confidence 35689999999999985 5999999999999999999998764 221 1110 1112222 33445678999
Q ss_pred EECCchhhccCCCceeee
Q 012169 404 IDNSPQVFRLQVNNGIPI 421 (469)
Q Consensus 404 IDDsp~s~~~qpeNgIpI 421 (469)
|-|...-...-...++.|
T Consensus 472 VGDg~nD~~al~~A~vgi 489 (562)
T TIGR01511 472 VGDGINDAPALAQADVGI 489 (562)
T ss_pred EeCCCccHHHHhhCCEEE
Confidence 999876543322344444
No 156
>PRK11590 hypothetical protein; Provisional
Probab=74.25 E-value=1.8 Score=41.37 Aligned_cols=39 Identities=18% Similarity=0.066 Sum_probs=34.8
Q ss_pred EeeCccHHHHH-HHhh-cceEEEEEcCCcHHHHHHHHHHhC
Q 012169 327 VKQRPHLKTFL-ERVA-EMFEVVIFTASQSIYAAQLLDILD 365 (469)
Q Consensus 327 V~lRPgL~eFL-e~Ls-k~YEIVIfTAs~~~YA~~VLd~LD 365 (469)
+..+|++.+.| +.+. +.+.++|-|++.+.|+++++..+.
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcc
Confidence 45689999999 5677 689999999999999999999876
No 157
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=74.22 E-value=1.4 Score=41.13 Aligned_cols=14 Identities=36% Similarity=0.648 Sum_probs=12.7
Q ss_pred EEEEeccccccccc
Q 012169 290 TLVLDLDETLVHST 303 (469)
Q Consensus 290 tLVLDLDeTLVhSs 303 (469)
.++|||||||+.|.
T Consensus 2 ~viFD~DGTLiDs~ 15 (197)
T TIGR01548 2 ALVLDMDGVMADVS 15 (197)
T ss_pred ceEEecCceEEech
Confidence 57999999999986
No 158
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=73.85 E-value=3 Score=41.08 Aligned_cols=73 Identities=15% Similarity=0.122 Sum_probs=42.5
Q ss_pred CCceEEEEeccccccccccc----c-----cCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHH
Q 012169 286 RKSVTLVLDLDETLVHSTLE----Y-----CDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSI 355 (469)
Q Consensus 286 ~kK~tLVLDLDeTLVhSs~~----~-----~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~ 355 (469)
.++..+|||+||||+..... . ....+|.-. ..... -..=|+..+|++++. +.++|++-|.-...
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~w--v~~~~----~~aip~a~~l~~~~~~~G~~V~~iT~R~~~ 143 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEW--VASGK----APAIPGALELYNYARSRGVKVFFITGRPES 143 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHH--HHCTG----GEEETTHHHHHHHHHHTTEEEEEEEEEETT
T ss_pred CCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHH--Hhccc----CcccHHHHHHHHHHHHCCCeEEEEecCCch
Confidence 56789999999999865321 0 011111100 00000 134588999999999 55999988876655
Q ss_pred HHHHHHHHh
Q 012169 356 YAAQLLDIL 364 (469)
Q Consensus 356 YA~~VLd~L 364 (469)
.-+.-++.|
T Consensus 144 ~r~~T~~nL 152 (229)
T PF03767_consen 144 QREATEKNL 152 (229)
T ss_dssp CHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 333333333
No 159
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=72.48 E-value=2 Score=39.54 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=12.5
Q ss_pred EEEEeccccccccc
Q 012169 290 TLVLDLDETLVHST 303 (469)
Q Consensus 290 tLVLDLDeTLVhSs 303 (469)
+++|||||||+.+.
T Consensus 2 ~viFDlDGTL~ds~ 15 (184)
T TIGR01993 2 VWFFDLDNTLYPHS 15 (184)
T ss_pred eEEEeCCCCCCCCc
Confidence 58999999999885
No 160
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=71.83 E-value=2.2 Score=40.14 Aligned_cols=15 Identities=33% Similarity=0.731 Sum_probs=13.4
Q ss_pred eEEEEeccccccccc
Q 012169 289 VTLVLDLDETLVHST 303 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs 303 (469)
+.++|||||||+++.
T Consensus 3 ~~viFDlDGTL~ds~ 17 (221)
T TIGR02253 3 KAIFFDLDDTLIDTS 17 (221)
T ss_pred eEEEEeCCCCCcCCC
Confidence 479999999999985
No 161
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=71.18 E-value=2.2 Score=40.32 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=13.5
Q ss_pred eEEEEeccccccccc
Q 012169 289 VTLVLDLDETLVHST 303 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs 303 (469)
++++|||||||+.+.
T Consensus 2 k~iiFD~DGTL~ds~ 16 (220)
T TIGR03351 2 SLVVLDMAGTTVDED 16 (220)
T ss_pred cEEEEecCCCeeccC
Confidence 578999999999986
No 162
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=70.38 E-value=2.2 Score=38.78 Aligned_cols=15 Identities=20% Similarity=0.576 Sum_probs=13.5
Q ss_pred eEEEEeccccccccc
Q 012169 289 VTLVLDLDETLVHST 303 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs 303 (469)
++++||+||||+.+.
T Consensus 2 ~~iiFD~DGTL~ds~ 16 (185)
T TIGR02009 2 KAVIFDMDGVIVDTA 16 (185)
T ss_pred CeEEEcCCCcccCCh
Confidence 478999999999996
No 163
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=70.24 E-value=2.1 Score=41.23 Aligned_cols=15 Identities=40% Similarity=0.629 Sum_probs=13.8
Q ss_pred eEEEEeccccccccc
Q 012169 289 VTLVLDLDETLVHST 303 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs 303 (469)
+.+|||+||||+.+.
T Consensus 13 k~viFD~DGTL~Ds~ 27 (229)
T PRK13226 13 RAVLFDLDGTLLDSA 27 (229)
T ss_pred CEEEEcCcCccccCH
Confidence 589999999999996
No 164
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=69.32 E-value=2.7 Score=40.85 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=13.4
Q ss_pred eEEEEeccccccccc
Q 012169 289 VTLVLDLDETLVHST 303 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs 303 (469)
++++||+||||+.+.
T Consensus 3 k~viFD~DGTLiDs~ 17 (253)
T TIGR01422 3 EAVIFDWAGTTVDFG 17 (253)
T ss_pred eEEEEeCCCCeecCC
Confidence 589999999999974
No 165
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=68.62 E-value=3 Score=41.62 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=16.3
Q ss_pred CCCceEEEEeccccccccc
Q 012169 285 GRKSVTLVLDLDETLVHST 303 (469)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs 303 (469)
....+.+||||||||++|.
T Consensus 21 ~~~~k~vIFDlDGTLvDS~ 39 (260)
T PLN03243 21 GCGWLGVVLEWEGVIVEDD 39 (260)
T ss_pred cCCceEEEEeCCCceeCCc
Confidence 4567789999999999984
No 166
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=68.58 E-value=2.8 Score=41.09 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=14.1
Q ss_pred ceEEEEeccccccccc
Q 012169 288 SVTLVLDLDETLVHST 303 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs 303 (469)
-+.++|||||||+.+.
T Consensus 22 ~k~viFDlDGTLiDs~ 37 (248)
T PLN02770 22 LEAVLFDVDGTLCDSD 37 (248)
T ss_pred cCEEEEcCCCccCcCH
Confidence 3589999999999986
No 167
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=68.47 E-value=2.5 Score=39.38 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=12.6
Q ss_pred EEEEeccccccccc
Q 012169 290 TLVLDLDETLVHST 303 (469)
Q Consensus 290 tLVLDLDeTLVhSs 303 (469)
.++|||||||+.+.
T Consensus 2 ~viFDlDGTL~d~~ 15 (203)
T TIGR02252 2 LITFDAVGTLLALK 15 (203)
T ss_pred eEEEecCCceeeeC
Confidence 68999999999974
No 168
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=68.36 E-value=2.7 Score=41.40 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=14.0
Q ss_pred ceEEEEeccccccccc
Q 012169 288 SVTLVLDLDETLVHST 303 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs 303 (469)
-++++||+||||+.+.
T Consensus 4 ~k~vIFDlDGTLiDs~ 19 (267)
T PRK13478 4 IQAVIFDWAGTTVDFG 19 (267)
T ss_pred eEEEEEcCCCCeecCC
Confidence 3689999999999984
No 169
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=68.01 E-value=3 Score=41.63 Aligned_cols=16 Identities=44% Similarity=0.576 Sum_probs=14.1
Q ss_pred ceEEEEeccccccccc
Q 012169 288 SVTLVLDLDETLVHST 303 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs 303 (469)
++.++|||||||+++.
T Consensus 13 ~k~viFDlDGTL~Ds~ 28 (272)
T PRK13223 13 PRLVMFDLDGTLVDSV 28 (272)
T ss_pred CCEEEEcCCCccccCH
Confidence 3499999999999995
No 170
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=67.65 E-value=8.4 Score=38.05 Aligned_cols=54 Identities=24% Similarity=0.238 Sum_probs=35.8
Q ss_pred ceEEEEecccccc-cccccccCCCCceEEEEecceeceEEEeeCccHHHHHH-HhhcceEEEEEcCCcHHHHHHHHHHhC
Q 012169 288 SVTLVLDLDETLV-HSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLE-RVAEMFEVVIFTASQSIYAAQLLDILD 365 (469)
Q Consensus 288 K~tLVLDLDeTLV-hSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe-~Lsk~YEIVIfTAs~~~YA~~VLd~LD 365 (469)
++.|+.||||||+ ... .-+.-+.++|+ ......-+++-|.-+..-+..++....
T Consensus 2 ~~ll~sDlD~Tl~~~~~------------------------~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~~~ 57 (247)
T PF05116_consen 2 PRLLASDLDGTLIDGDD------------------------EALARLEELLEQQARPEILFVYVTGRSLESVLRLLREYN 57 (247)
T ss_dssp SEEEEEETBTTTBHCHH------------------------HHHHHHHHHHHHHHCCGEEEEEE-SS-HHHHHHHHHHCT
T ss_pred CEEEEEECCCCCcCCCH------------------------HHHHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHhCC
Confidence 6799999999999 221 01344556666 334557777888888888888887653
No 171
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=67.51 E-value=3 Score=40.46 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=13.7
Q ss_pred ceEEEEeccccccccc
Q 012169 288 SVTLVLDLDETLVHST 303 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs 303 (469)
-+.++|||||||+.+.
T Consensus 10 ~k~iiFDlDGTL~D~~ 25 (238)
T PRK10748 10 ISALTFDLDDTLYDNR 25 (238)
T ss_pred ceeEEEcCcccccCCh
Confidence 3589999999999974
No 172
>PRK11590 hypothetical protein; Provisional
Probab=67.32 E-value=8.3 Score=36.78 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=14.2
Q ss_pred CceEEEEeccccccccc
Q 012169 287 KSVTLVLDLDETLVHST 303 (469)
Q Consensus 287 kK~tLVLDLDeTLVhSs 303 (469)
++++++|||||||++..
T Consensus 5 ~~k~~iFD~DGTL~~~d 21 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQD 21 (211)
T ss_pred cceEEEEecCCCCcccc
Confidence 45699999999999654
No 173
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=65.69 E-value=11 Score=43.14 Aligned_cols=62 Identities=23% Similarity=0.222 Sum_probs=44.8
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhc--ceEEEEEcCCcHHHHHHHHH
Q 012169 285 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE--MFEVVIFTASQSIYAAQLLD 362 (469)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk--~YEIVIfTAs~~~YA~~VLd 362 (469)
..++..+++|+||||+.....+. ....-|.+.+.|+.|.+ ...++|-|.-.....++++.
T Consensus 489 ~~~~rLi~~D~DGTL~~~~~~~~------------------~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~ 550 (726)
T PRK14501 489 AASRRLLLLDYDGTLVPFAPDPE------------------LAVPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFG 550 (726)
T ss_pred hccceEEEEecCccccCCCCCcc------------------cCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhC
Confidence 45678999999999996421110 01235788899999997 78899999998887777665
Q ss_pred Hh
Q 012169 363 IL 364 (469)
Q Consensus 363 ~L 364 (469)
.+
T Consensus 551 ~~ 552 (726)
T PRK14501 551 DL 552 (726)
T ss_pred CC
Confidence 43
No 174
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=64.68 E-value=2.6 Score=39.49 Aligned_cols=13 Identities=54% Similarity=0.708 Sum_probs=11.9
Q ss_pred EEEeccccccccc
Q 012169 291 LVLDLDETLVHST 303 (469)
Q Consensus 291 LVLDLDeTLVhSs 303 (469)
+||||||||+.+.
T Consensus 1 iiFDlDGTL~Ds~ 13 (205)
T TIGR01454 1 VVFDLDGVLVDSF 13 (205)
T ss_pred CeecCcCccccCH
Confidence 5899999999986
No 175
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=64.58 E-value=3.1 Score=37.78 Aligned_cols=14 Identities=21% Similarity=0.605 Sum_probs=12.6
Q ss_pred EEEEeccccccccc
Q 012169 290 TLVLDLDETLVHST 303 (469)
Q Consensus 290 tLVLDLDeTLVhSs 303 (469)
.+|||+||||+.+.
T Consensus 1 ~iiFD~DGTL~ds~ 14 (185)
T TIGR01990 1 AVIFDLDGVITDTA 14 (185)
T ss_pred CeEEcCCCccccCh
Confidence 37999999999987
No 176
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=64.52 E-value=3.9 Score=38.84 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=14.5
Q ss_pred CceEEEEeccccccccc
Q 012169 287 KSVTLVLDLDETLVHST 303 (469)
Q Consensus 287 kK~tLVLDLDeTLVhSs 303 (469)
+.+.++||+||||+++.
T Consensus 6 ~~k~iiFD~DGTL~d~~ 22 (222)
T PRK10826 6 QILAAIFDMDGLLIDSE 22 (222)
T ss_pred cCcEEEEcCCCCCCcCH
Confidence 35689999999999985
No 177
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=63.89 E-value=3.8 Score=41.30 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.2
Q ss_pred CCceEEEEeccccccccc
Q 012169 286 RKSVTLVLDLDETLVHST 303 (469)
Q Consensus 286 ~kK~tLVLDLDeTLVhSs 303 (469)
.+-+.+||||||||+.+.
T Consensus 38 ~~~k~VIFDlDGTLvDS~ 55 (286)
T PLN02779 38 ALPEALLFDCDGVLVETE 55 (286)
T ss_pred cCCcEEEEeCceeEEccc
Confidence 344689999999999986
No 178
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=63.61 E-value=9.2 Score=36.80 Aligned_cols=54 Identities=19% Similarity=0.151 Sum_probs=34.4
Q ss_pred EEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhcceEEEEEcCCcHHHHHHHHHHhCCC
Q 012169 290 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPD 367 (469)
Q Consensus 290 tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk~YEIVIfTAs~~~YA~~VLd~LDP~ 367 (469)
.+++||||||++.... +.|.. +-++...+...++|-|.-...-+..+++.++..
T Consensus 1 li~~DlDgTLl~~~~~-----------------------~~~~~-~~~~~~~~gi~~viaTGR~~~~v~~~~~~l~l~ 54 (236)
T TIGR02471 1 LIITDLDNTLLGDDEG-----------------------LASFV-ELLRGSGDAVGFGIATGRSVESAKSRYAKLNLP 54 (236)
T ss_pred CeEEeccccccCCHHH-----------------------HHHHH-HHHHhcCCCceEEEEeCCCHHHHHHHHHhCCCC
Confidence 3688999999984211 11222 444433355677777888877788887777543
No 179
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=63.38 E-value=16 Score=35.25 Aligned_cols=38 Identities=13% Similarity=0.038 Sum_probs=33.8
Q ss_pred EeeCccHHHHHH-Hhh-cceEEEEEcCCcHHHHHHHHHHh
Q 012169 327 VKQRPHLKTFLE-RVA-EMFEVVIFTASQSIYAAQLLDIL 364 (469)
Q Consensus 327 V~lRPgL~eFLe-~Ls-k~YEIVIfTAs~~~YA~~VLd~L 364 (469)
+..+|++.+.|+ ++. +.+.++|-|++...|++++++..
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~ 132 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDS 132 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhc
Confidence 367999999995 777 69999999999999999999774
No 180
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=62.97 E-value=3.7 Score=38.40 Aligned_cols=15 Identities=40% Similarity=0.654 Sum_probs=13.3
Q ss_pred eEEEEeccccccccc
Q 012169 289 VTLVLDLDETLVHST 303 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs 303 (469)
+.++||+||||+++.
T Consensus 2 k~viFD~DGTL~d~~ 16 (224)
T TIGR02254 2 KTLLFDLDDTILDFQ 16 (224)
T ss_pred CEEEEcCcCcccccc
Confidence 479999999999975
No 181
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=62.92 E-value=4.4 Score=37.24 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=13.4
Q ss_pred ceEEEEeccccccccc
Q 012169 288 SVTLVLDLDETLVHST 303 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs 303 (469)
.+++|||+||||+.+.
T Consensus 4 ~k~viFD~DGTLid~~ 19 (201)
T TIGR01491 4 IKLIIFDLDGTLTDVM 19 (201)
T ss_pred ceEEEEeCCCCCcCCc
Confidence 3589999999999853
No 182
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=62.60 E-value=3 Score=38.90 Aligned_cols=13 Identities=54% Similarity=0.802 Sum_probs=11.7
Q ss_pred EEEeccccccccc
Q 012169 291 LVLDLDETLVHST 303 (469)
Q Consensus 291 LVLDLDeTLVhSs 303 (469)
+|||+||||+.|.
T Consensus 1 viFD~DGTL~Ds~ 13 (213)
T TIGR01449 1 VLFDLDGTLVDSA 13 (213)
T ss_pred CeecCCCccccCH
Confidence 5899999999985
No 183
>PRK09449 dUMP phosphatase; Provisional
Probab=62.44 E-value=3.8 Score=38.77 Aligned_cols=14 Identities=43% Similarity=0.520 Sum_probs=12.4
Q ss_pred eEEEEecccccccc
Q 012169 289 VTLVLDLDETLVHS 302 (469)
Q Consensus 289 ~tLVLDLDeTLVhS 302 (469)
++++|||||||++.
T Consensus 4 k~iiFDlDGTLid~ 17 (224)
T PRK09449 4 DWILFDADETLFHF 17 (224)
T ss_pred cEEEEcCCCchhcc
Confidence 58999999999974
No 184
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=62.23 E-value=4 Score=37.96 Aligned_cols=15 Identities=33% Similarity=0.377 Sum_probs=13.2
Q ss_pred eEEEEeccccccccc
Q 012169 289 VTLVLDLDETLVHST 303 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs 303 (469)
+.++||+||||+++.
T Consensus 2 k~viFD~dgTLiD~~ 16 (198)
T TIGR01428 2 KALVFDVYGTLFDVH 16 (198)
T ss_pred cEEEEeCCCcCccHH
Confidence 379999999999975
No 185
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=61.78 E-value=4.5 Score=37.99 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=13.2
Q ss_pred eEEEEeccccccccc
Q 012169 289 VTLVLDLDETLVHST 303 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs 303 (469)
+.++|||||||+++.
T Consensus 3 k~viFDldGtL~d~~ 17 (211)
T TIGR02247 3 KAVIFDFGGVLLPSP 17 (211)
T ss_pred eEEEEecCCceecCH
Confidence 479999999999874
No 186
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=61.76 E-value=4 Score=38.32 Aligned_cols=16 Identities=44% Similarity=0.551 Sum_probs=13.6
Q ss_pred ceEEEEeccccccccc
Q 012169 288 SVTLVLDLDETLVHST 303 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs 303 (469)
-+.++||+||||+++.
T Consensus 6 ~~~iiFD~DGTL~d~~ 21 (226)
T PRK13222 6 IRAVAFDLDGTLVDSA 21 (226)
T ss_pred CcEEEEcCCcccccCH
Confidence 3489999999999874
No 187
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=61.69 E-value=25 Score=35.53 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=40.9
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCC
Q 012169 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDP 366 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP 366 (469)
.+.+.+|||+||+-...+..+ +...|.++. ..|+||..|+-++.=-..+-+.|+-
T Consensus 7 ~~lIFtDlD~TLl~~~ye~~p------------------------A~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v 62 (274)
T COG3769 7 PLLIFTDLDGTLLPHSYEWQP------------------------AAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGV 62 (274)
T ss_pred ceEEEEcccCcccCCCCCCCc------------------------cchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Confidence 457888999999984433221 123345555 6799999999888777777788887
Q ss_pred CCC
Q 012169 367 DGK 369 (469)
Q Consensus 367 ~~k 369 (469)
++.
T Consensus 63 ~~~ 65 (274)
T COG3769 63 QGL 65 (274)
T ss_pred CCC
Confidence 753
No 188
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=61.08 E-value=4.1 Score=36.95 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=11.9
Q ss_pred EEEeccccccccc
Q 012169 291 LVLDLDETLVHST 303 (469)
Q Consensus 291 LVLDLDeTLVhSs 303 (469)
++|||||||+.+.
T Consensus 2 viFD~DGTL~D~~ 14 (175)
T TIGR01493 2 MVFDVYGTLVDVH 14 (175)
T ss_pred eEEecCCcCcccH
Confidence 7999999999986
No 189
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=60.20 E-value=4.8 Score=38.06 Aligned_cols=16 Identities=38% Similarity=0.424 Sum_probs=13.8
Q ss_pred ceEEEEeccccccccc
Q 012169 288 SVTLVLDLDETLVHST 303 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs 303 (469)
.+.++||+||||+.+.
T Consensus 4 ~~~viFD~DGTL~d~~ 19 (221)
T PRK10563 4 IEAVFFDCDGTLVDSE 19 (221)
T ss_pred CCEEEECCCCCCCCCh
Confidence 3589999999999975
No 190
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=59.28 E-value=12 Score=38.39 Aligned_cols=90 Identities=11% Similarity=0.135 Sum_probs=51.8
Q ss_pred CceEEEEecccccccccccccCCCCceEEEEecceece-E-----EEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHH
Q 012169 287 KSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHT-V-----YVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQ 359 (469)
Q Consensus 287 kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~-v-----yV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~ 359 (469)
++-.+|||+|||++...... ....|... .++..... - -...=|+..+|++++. +.+.|++.|.-....-+.
T Consensus 100 ~~dA~V~DIDET~LsN~pY~-~~~~~g~e-~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~a 177 (275)
T TIGR01680 100 EKDTFLFNIDGTALSNIPYY-KKHGYGSE-KFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAV 177 (275)
T ss_pred CCCEEEEECccccccCHHHH-HHhcCCCC-cCChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHH
Confidence 45799999999999543111 11111100 00000000 0 1233589999999997 669999999988776666
Q ss_pred HHHHhCCCCCc-eeEEEeec
Q 012169 360 LLDILDPDGKL-ISRRVYRE 378 (469)
Q Consensus 360 VLd~LDP~~kl-f~~rL~Re 378 (469)
-++.|...|-. ..+.+.|.
T Consensus 178 T~~NL~kaGy~~~~~LiLR~ 197 (275)
T TIGR01680 178 TEANLKKAGYHTWEKLILKD 197 (275)
T ss_pred HHHHHHHcCCCCcceeeecC
Confidence 66666555511 23444564
No 191
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=58.78 E-value=4.6 Score=35.35 Aligned_cols=13 Identities=46% Similarity=0.828 Sum_probs=11.7
Q ss_pred EEEeccccccccc
Q 012169 291 LVLDLDETLVHST 303 (469)
Q Consensus 291 LVLDLDeTLVhSs 303 (469)
++||+||||+++.
T Consensus 1 iifD~dgtL~d~~ 13 (176)
T PF13419_consen 1 IIFDLDGTLVDTD 13 (176)
T ss_dssp EEEESBTTTEEHH
T ss_pred cEEECCCCcEeCH
Confidence 6899999999875
No 192
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=57.34 E-value=5.6 Score=39.86 Aligned_cols=90 Identities=17% Similarity=0.107 Sum_probs=67.4
Q ss_pred EEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceee-----eCCcccccccccCCCC
Q 012169 325 VYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIF-----SDGTYTKDLTVLGVDL 398 (469)
Q Consensus 325 vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~-----~~g~yiKDLs~LGrDL 398 (469)
.+....|-+ ++|+++. +.+.|.|.|....++= .++..+.-. .+|++.+. +|.. ....|.+-|..+|..+
T Consensus 111 ~~~~~~~~~-~~lq~lR~~g~~l~iisN~d~r~~-~~l~~~~l~-~~fD~vv~--S~e~g~~KPDp~If~~al~~l~v~P 185 (237)
T KOG3085|consen 111 AWKYLDGMQ-ELLQKLRKKGTILGIISNFDDRLR-LLLLPLGLS-AYFDFVVE--SCEVGLEKPDPRIFQLALERLGVKP 185 (237)
T ss_pred CceeccHHH-HHHHHHHhCCeEEEEecCCcHHHH-HHhhccCHH-Hhhhhhhh--hhhhccCCCChHHHHHHHHHhCCCh
Confidence 345556666 9999999 6789999999999887 777777766 58888776 3332 2356788899999999
Q ss_pred CcEEEEECCchh-hccCCCcee
Q 012169 399 AKVAIIDNSPQV-FRLQVNNGI 419 (469)
Q Consensus 399 skvIIIDDsp~s-~~~qpeNgI 419 (469)
+.+|.|||.... +.....=|+
T Consensus 186 ee~vhIgD~l~nD~~gA~~~G~ 207 (237)
T KOG3085|consen 186 EECVHIGDLLENDYEGARNLGW 207 (237)
T ss_pred HHeEEecCccccccHhHHHcCC
Confidence 999999999987 543333333
No 193
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=57.08 E-value=29 Score=32.74 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=40.8
Q ss_pred EEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHh
Q 012169 291 LVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDIL 364 (469)
Q Consensus 291 LVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~L 364 (469)
+|.|+||||.-|-... ..+ ...+.. +.+||+.++..++. +.|.++=-|+-.-..|...-+.|
T Consensus 2 VvsDIDGTiT~SD~~G-----~i~----~~~G~d---~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L 64 (157)
T PF08235_consen 2 VVSDIDGTITKSDVLG-----HIL----PILGKD---WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWL 64 (157)
T ss_pred EEEeccCCcCccchhh-----hhh----hccCch---hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHH
Confidence 6889999998773110 000 111112 57999999999999 55888887887766655544444
No 194
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=56.86 E-value=9.3 Score=42.06 Aligned_cols=87 Identities=14% Similarity=0.126 Sum_probs=61.2
Q ss_pred EEeeCccHHHHHHHhhc-ce-EEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeeeCCcccccccccCCCCCcEEE
Q 012169 326 YVKQRPHLKTFLERVAE-MF-EVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAI 403 (469)
Q Consensus 326 yV~lRPgL~eFLe~Lsk-~Y-EIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~~g~yiKDLs~LGrDLskvII 403 (469)
.-..||++.+.|+++.+ .+ +++|-|...+.+|..+++.+...+ +|.... .....+-++.++...++++.
T Consensus 360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~-~f~~~~--------p~~K~~~i~~l~~~~~~v~~ 430 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDE-VHAELL--------PEDKLEIVKELREKYGPVAM 430 (536)
T ss_pred eccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChh-hhhccC--------cHHHHHHHHHHHhcCCEEEE
Confidence 46789999999999995 58 999999999999999999998764 442111 11112334455666688999
Q ss_pred EECCchhhccCCCceeee
Q 012169 404 IDNSPQVFRLQVNNGIPI 421 (469)
Q Consensus 404 IDDsp~s~~~qpeNgIpI 421 (469)
|-|...-...-...++.|
T Consensus 431 vGDg~nD~~al~~A~vgi 448 (536)
T TIGR01512 431 VGDGINDAPALAAADVGI 448 (536)
T ss_pred EeCCHHHHHHHHhCCEEE
Confidence 999986553333344433
No 195
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=55.89 E-value=5.1 Score=36.05 Aligned_cols=13 Identities=38% Similarity=0.769 Sum_probs=12.0
Q ss_pred EEEeccccccccc
Q 012169 291 LVLDLDETLVHST 303 (469)
Q Consensus 291 LVLDLDeTLVhSs 303 (469)
++|||||||+.+.
T Consensus 2 vlFDlDgtLv~~~ 14 (183)
T TIGR01509 2 ILFDLDGVLVDTS 14 (183)
T ss_pred eeeccCCceechH
Confidence 7999999999985
No 196
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=55.64 E-value=11 Score=41.51 Aligned_cols=87 Identities=14% Similarity=0.083 Sum_probs=59.7
Q ss_pred EEeeCccHHHHHHHhh-cc-eEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeeeCCcccccccccCCCCCcEEE
Q 012169 326 YVKQRPHLKTFLERVA-EM-FEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAI 403 (469)
Q Consensus 326 yV~lRPgL~eFLe~Ls-k~-YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~~g~yiKDLs~LGrDLskvII 403 (469)
....||++.+.|+++. +. ++++|-|...+.+|..+++.++-.. +|... . ...-.+-+..++....+++.
T Consensus 382 ~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~-~f~~~-~-------p~~K~~~v~~l~~~~~~v~~ 452 (556)
T TIGR01525 382 RDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDE-VHAEL-L-------PEDKLAIVKELQEEGGVVAM 452 (556)
T ss_pred cccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCe-eeccC-C-------HHHHHHHHHHHHHcCCEEEE
Confidence 3668999999999997 56 9999999999999999999998754 44321 1 01111223334445568999
Q ss_pred EECCchhhccCCCceeee
Q 012169 404 IDNSPQVFRLQVNNGIPI 421 (469)
Q Consensus 404 IDDsp~s~~~qpeNgIpI 421 (469)
|-|...-...-...++-|
T Consensus 453 vGDg~nD~~al~~A~vgi 470 (556)
T TIGR01525 453 VGDGINDAPALAAADVGI 470 (556)
T ss_pred EECChhHHHHHhhCCEeE
Confidence 999986543333334433
No 197
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=53.14 E-value=12 Score=33.91 Aligned_cols=47 Identities=17% Similarity=0.260 Sum_probs=37.7
Q ss_pred eCccHH----HHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCC-CceeEEE
Q 012169 329 QRPHLK----TFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDG-KLISRRV 375 (469)
Q Consensus 329 lRPgL~----eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~-klf~~rL 375 (469)
++|++. +||+.+. +.++++|-|++...+++.+++.+.-.. ..+..++
T Consensus 86 ~~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~ 138 (192)
T PF12710_consen 86 LFPGFIPDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNEL 138 (192)
T ss_dssp HCTTCHTTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEE
T ss_pred cCcCchhhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEee
Confidence 457777 9999985 789999999999999999999887654 2344444
No 198
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=49.39 E-value=6.7 Score=42.12 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=14.1
Q ss_pred ceEEEEeccccccccc
Q 012169 288 SVTLVLDLDETLVHST 303 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs 303 (469)
-..++|||||||+++.
T Consensus 241 ~k~vIFDlDGTLiDs~ 256 (459)
T PRK06698 241 LQALIFDMDGTLFQTD 256 (459)
T ss_pred hhheeEccCCceecch
Confidence 3589999999999986
No 199
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=48.55 E-value=51 Score=30.89 Aligned_cols=66 Identities=26% Similarity=0.335 Sum_probs=37.6
Q ss_pred eCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeeeCCcccccccccCCCCCcEEEEECC
Q 012169 329 QRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNS 407 (469)
Q Consensus 329 lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~~g~yiKDLs~LGrDLskvIIIDDs 407 (469)
.|-.+.+||+.+. +.-.|++|-|+.+. ..+|+.++...+++ ..+||++
T Consensus 53 ~~~~l~~~L~~~~~~gk~I~~yGA~~kg--~tlln~~g~~~~~I-----------------------------~~vvD~n 101 (160)
T PF08484_consen 53 SKAELREFLEKLKAEGKRIAGYGAGAKG--NTLLNYFGLDNDLI-----------------------------DYVVDDN 101 (160)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE---SHH--HHHHHHHT--TTTS-------------------------------EEES-
T ss_pred HHHHHHHHHHHHHHcCCEEEEECcchHH--HHHHHHhCCCccee-----------------------------EEEEeCC
Confidence 4556778888887 56779999999874 45677777765444 3478888
Q ss_pred chhh-ccCCCceeeecccc
Q 012169 408 PQVF-RLQVNNGIPIESWF 425 (469)
Q Consensus 408 p~s~-~~qpeNgIpI~~w~ 425 (469)
|... .+-|..+|||.+..
T Consensus 102 p~K~G~~~PGt~ipI~~p~ 120 (160)
T PF08484_consen 102 PLKQGKYLPGTHIPIVSPE 120 (160)
T ss_dssp GGGTTEE-TTT--EEEEGG
T ss_pred hhhcCcccCCCCCeECCHH
Confidence 8776 44677788887764
No 200
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=46.98 E-value=10 Score=40.50 Aligned_cols=18 Identities=0% Similarity=0.172 Sum_probs=15.7
Q ss_pred CCceEEEEeccccccccc
Q 012169 286 RKSVTLVLDLDETLVHST 303 (469)
Q Consensus 286 ~kK~tLVLDLDeTLVhSs 303 (469)
.+-+.+|||||||||.+.
T Consensus 129 ~~~~~VIFDlDGTLIDS~ 146 (381)
T PLN02575 129 CGWLGAIFEWEGVIIEDN 146 (381)
T ss_pred CCCCEEEEcCcCcceeCH
Confidence 466799999999999875
No 201
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=45.70 E-value=34 Score=40.25 Aligned_cols=60 Identities=17% Similarity=0.114 Sum_probs=41.5
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhh--cceEEEEEcCCcHHHHHHHHH
Q 012169 285 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA--EMFEVVIFTASQSIYAAQLLD 362 (469)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Ls--k~YEIVIfTAs~~~YA~~VLd 362 (469)
..++..|+||+||||+..... -+..-|.+.+-|+.|+ +...++|-|.-...-.+.++.
T Consensus 593 ~~~~rlI~LDyDGTLlp~~~~--------------------~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~ 652 (854)
T PLN02205 593 RTTTRAILLDYDGTLMPQASI--------------------DKSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFS 652 (854)
T ss_pred hhcCeEEEEecCCcccCCccc--------------------cCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhC
Confidence 346788999999999954210 0122468888899885 457788888887777776665
Q ss_pred Hh
Q 012169 363 IL 364 (469)
Q Consensus 363 ~L 364 (469)
.+
T Consensus 653 ~~ 654 (854)
T PLN02205 653 PC 654 (854)
T ss_pred CC
Confidence 44
No 202
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=44.96 E-value=12 Score=35.82 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=13.7
Q ss_pred ceEEEEeccccccccc
Q 012169 288 SVTLVLDLDETLVHST 303 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs 303 (469)
++++++|+||||+.+.
T Consensus 3 ~~~vifDfDgTi~~~d 18 (219)
T PRK09552 3 SIQIFCDFDGTITNND 18 (219)
T ss_pred CcEEEEcCCCCCCcch
Confidence 4589999999999874
No 203
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=44.53 E-value=31 Score=33.38 Aligned_cols=50 Identities=22% Similarity=0.163 Sum_probs=29.5
Q ss_pred EEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhcceE--EEEEcCCcHHHHHH
Q 012169 292 VLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFE--VVIFTASQSIYAAQ 359 (469)
Q Consensus 292 VLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk~YE--IVIfTAs~~~YA~~ 359 (469)
.||.||||.--...+ --...-|.+.+.|+.|++... |+|-|.-...-.+.
T Consensus 1 ~lDyDGTL~p~~~~p------------------~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~ 52 (235)
T PF02358_consen 1 FLDYDGTLAPIVDDP------------------DAAVPPPELRELLRALAADPNNTVAIVSGRSLDDLER 52 (235)
T ss_dssp EEE-TTTSS---S-G------------------GG----HHHHHHHHHHHHHSE--EEEE-SS-HHHHHH
T ss_pred CcccCCccCCCCCCc------------------cccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHH
Confidence 489999998543222 124567999999999998766 78888777766333
No 204
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=44.19 E-value=12 Score=36.04 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=13.8
Q ss_pred ceEEEEeccccccccc
Q 012169 288 SVTLVLDLDETLVHST 303 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs 303 (469)
++..+||+||||++.-
T Consensus 5 ~~la~FDfDgTLt~~d 20 (210)
T TIGR01545 5 KRIIFFDLDGTLHQQD 20 (210)
T ss_pred CcEEEEcCCCCCccCc
Confidence 5688999999999974
No 205
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=42.95 E-value=15 Score=34.49 Aligned_cols=16 Identities=31% Similarity=0.463 Sum_probs=13.9
Q ss_pred ceEEEEeccccccccc
Q 012169 288 SVTLVLDLDETLVHST 303 (469)
Q Consensus 288 K~tLVLDLDeTLVhSs 303 (469)
.+.++||+||||++..
T Consensus 4 ~k~i~FD~d~TL~d~~ 19 (229)
T COG1011 4 IKAILFDLDGTLLDFD 19 (229)
T ss_pred eeEEEEecCCcccccc
Confidence 4689999999999974
No 206
>PLN02382 probable sucrose-phosphatase
Probab=42.47 E-value=64 Score=34.60 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=14.3
Q ss_pred CCceEEEEecccccccc
Q 012169 286 RKSVTLVLDLDETLVHS 302 (469)
Q Consensus 286 ~kK~tLVLDLDeTLVhS 302 (469)
.+++.|+.||||||+..
T Consensus 7 ~~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 7 SPRLMIVSDLDHTMVDH 23 (413)
T ss_pred CCCEEEEEcCCCcCcCC
Confidence 45789999999999965
No 207
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=41.33 E-value=47 Score=38.72 Aligned_cols=64 Identities=17% Similarity=0.156 Sum_probs=45.1
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhc--ceEEEEEcCCcHHHHHHHHH
Q 012169 285 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE--MFEVVIFTASQSIYAAQLLD 362 (469)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk--~YEIVIfTAs~~~YA~~VLd 362 (469)
..++..|+||.||||+.....+. ...-+..-|.+.+-|+.|++ .-.|+|-|.-...-.+.++.
T Consensus 504 ~a~~rll~LDyDGTL~~~~~~~~---------------~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~ 568 (797)
T PLN03063 504 KSNNRLLILGFYGTLTEPRNSQI---------------KEMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFG 568 (797)
T ss_pred hccCeEEEEecCccccCCCCCcc---------------ccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhC
Confidence 45677899999999995321110 11124456899999999985 47888999888877777775
Q ss_pred H
Q 012169 363 I 363 (469)
Q Consensus 363 ~ 363 (469)
.
T Consensus 569 ~ 569 (797)
T PLN03063 569 E 569 (797)
T ss_pred C
Confidence 4
No 208
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=41.29 E-value=15 Score=34.43 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=12.5
Q ss_pred EEEEeccccccccc
Q 012169 290 TLVLDLDETLVHST 303 (469)
Q Consensus 290 tLVLDLDeTLVhSs 303 (469)
++||||||||++..
T Consensus 2 ~viFDldgvL~d~~ 15 (199)
T PRK09456 2 LYIFDLGNVIVDID 15 (199)
T ss_pred EEEEeCCCccccCc
Confidence 68999999999874
No 209
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=35.36 E-value=42 Score=33.97 Aligned_cols=102 Identities=19% Similarity=0.290 Sum_probs=55.7
Q ss_pred EEeeCccHHHHHHHhhcc-eEEEEEcCCcHHHHHHHHHHhCC---CCCceeEEEee-ccee---eeC---Cccccccccc
Q 012169 326 YVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILDP---DGKLISRRVYR-ESCI---FSD---GTYTKDLTVL 394 (469)
Q Consensus 326 yV~lRPgL~eFLe~Lsk~-YEIVIfTAs~~~YA~~VLd~LDP---~~klf~~rL~R-e~C~---~~~---g~yiKDLs~L 394 (469)
.+.+|.|+.+|++.|.++ --+.|||||.-.-.+.+|+.-.. .=+.++..+.= +.-. +.+ ..|.|+-..+
T Consensus 88 ~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~~l 167 (246)
T PF05822_consen 88 DIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNESAL 167 (246)
T ss_dssp ---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHHHH
T ss_pred chhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCcccc
Confidence 488999999999999965 89999999999999999988631 11334444432 1111 111 1234543333
Q ss_pred --------CCCCCcEEEEECCchhhcc-----CCCceeeeccccCCC
Q 012169 395 --------GVDLAKVAIIDNSPQVFRL-----QVNNGIPIESWFDDP 428 (469)
Q Consensus 395 --------GrDLskvIIIDDsp~s~~~-----qpeNgIpI~~w~dd~ 428 (469)
-....+||++=|+..-..+ ..+|.|.|. |.++.
T Consensus 168 ~~~~~~~~~~~R~NvlLlGDslgD~~Ma~G~~~~~~~lkIG-FLn~~ 213 (246)
T PF05822_consen 168 EDSPYFKQLKKRTNVLLLGDSLGDLHMADGVPDEENVLKIG-FLNDK 213 (246)
T ss_dssp TTHHHHHCTTT--EEEEEESSSGGGGTTTT-S--SEEEEEE-EE-SS
T ss_pred cCchHHHHhccCCcEEEecCccCChHhhcCCCccccEEEEE-ecccC
Confidence 1356789999999965422 335555553 43333
No 210
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=33.73 E-value=64 Score=34.88 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=38.0
Q ss_pred CCceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhcceEEEEEcCCc
Q 012169 286 RKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQ 353 (469)
Q Consensus 286 ~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk~YEIVIfTAs~ 353 (469)
...+..-||+|||||...... .+......|.+..++....+=+.=.+.|-++|||...
T Consensus 73 ~~~K~i~FD~dgtlI~t~sg~----------vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~ 130 (422)
T KOG2134|consen 73 GGSKIIMFDYDGTLIDTKSGK----------VFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQN 130 (422)
T ss_pred CCcceEEEecCCceeecCCcc----------eeeccCccceeeccccchhhhhhccCCeEEEEEeccc
Confidence 445688999999999975321 1222334555666666666544444789999999765
No 211
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=33.05 E-value=94 Score=28.64 Aligned_cols=72 Identities=22% Similarity=0.272 Sum_probs=46.6
Q ss_pred EEecceeceEEEeeCccHHHHHHHhhc-ceEEEEEcCCcHH-HHHHHHHHhCCCCCceeEEEeecceeeeCCcccccccc
Q 012169 316 VFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSI-YAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTV 393 (469)
Q Consensus 316 i~~~~~~~~vyV~lRPgL~eFLe~Lsk-~YEIVIfTAs~~~-YA~~VLd~LDP~~klf~~rL~Re~C~~~~g~yiKDLs~ 393 (469)
+.+.+++ ..++.+.++++.+.+ .+.+.|+|..... --+.++..+|- ...|.|+.+|..
T Consensus 65 Vt~SGGE-----l~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~il~~iD~---------------l~~g~y~~~~~~ 124 (147)
T TIGR02826 65 VLFLGGE-----WNREALLSLLKIFKEKGLKTCLYTGLEPKDIPLELVQHLDY---------------LKTGRWIHTRGG 124 (147)
T ss_pred EEEechh-----cCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHhCCE---------------EEEChHHHHcCC
Confidence 4555555 367899999999985 5899999986542 22344444432 345667666666
Q ss_pred cCCCCCcEEEEECC
Q 012169 394 LGVDLAKVAIIDNS 407 (469)
Q Consensus 394 LGrDLskvIIIDDs 407 (469)
+++.-+|=+|+|-.
T Consensus 125 ~~~~~sNQ~~~~~~ 138 (147)
T TIGR02826 125 LGSPTTNQIFIDLR 138 (147)
T ss_pred CCCCCcCceEEECC
Confidence 65544577777743
No 212
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=32.88 E-value=35 Score=37.73 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=19.1
Q ss_pred EEEEEcCCcHHHHHHHHHH-hCCC
Q 012169 345 EVVIFTASQSIYAAQLLDI-LDPD 367 (469)
Q Consensus 345 EIVIfTAs~~~YA~~VLd~-LDP~ 367 (469)
+.+|-||+.+.|++++++. |+-+
T Consensus 124 ~~vvVSASp~~~Vepfa~~~LGid 147 (497)
T PLN02177 124 KRYIITASPRIMVEPFVKTFLGAD 147 (497)
T ss_pred CEEEEECCcHHHHHHHHHHcCCCC
Confidence 4599999999999999975 6544
No 213
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=32.20 E-value=83 Score=37.61 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=47.7
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeceEEEeeCccHHHHHHHhhcc--eEEEEEcCCcHHHHHHHHH
Q 012169 285 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM--FEVVIFTASQSIYAAQLLD 362 (469)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~vyV~lRPgL~eFLe~Lsk~--YEIVIfTAs~~~YA~~VLd 362 (469)
..++..|+||.||||+--...+...... -....+..-|.+.+.|+.|++. ..|+|-|.-...-.+.++.
T Consensus 588 ~a~~RLlfLDyDGTLap~~~~P~~~~~~---------~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg 658 (934)
T PLN03064 588 QSNNRLLILGFNATLTEPVDTPGRRGDQ---------IKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFG 658 (934)
T ss_pred hccceEEEEecCceeccCCCCccccccc---------ccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhC
Confidence 4567889999999998653222100000 0011234457899999999954 7899999999888888776
Q ss_pred Hh
Q 012169 363 IL 364 (469)
Q Consensus 363 ~L 364 (469)
.+
T Consensus 659 ~~ 660 (934)
T PLN03064 659 EF 660 (934)
T ss_pred CC
Confidence 55
No 214
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=31.42 E-value=22 Score=31.92 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=11.1
Q ss_pred EEEeccccccccc
Q 012169 291 LVLDLDETLVHST 303 (469)
Q Consensus 291 LVLDLDeTLVhSs 303 (469)
+|+|+||||+...
T Consensus 2 ~~fD~DgTl~~~~ 14 (177)
T TIGR01488 2 AIFDFDGTLTRQD 14 (177)
T ss_pred EEecCccccccch
Confidence 6899999999753
No 215
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=30.52 E-value=28 Score=31.61 Aligned_cols=13 Identities=38% Similarity=0.682 Sum_probs=11.4
Q ss_pred EEEeccccccccc
Q 012169 291 LVLDLDETLVHST 303 (469)
Q Consensus 291 LVLDLDeTLVhSs 303 (469)
+++|+||||+...
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 5899999999875
No 216
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=29.18 E-value=27 Score=32.34 Aligned_cols=13 Identities=31% Similarity=0.445 Sum_probs=11.2
Q ss_pred EEEeccccccccc
Q 012169 291 LVLDLDETLVHST 303 (469)
Q Consensus 291 LVLDLDeTLVhSs 303 (469)
.+||+||||+...
T Consensus 2 a~FD~DgTL~~~~ 14 (202)
T TIGR01490 2 AFFDFDGTLTAKD 14 (202)
T ss_pred eEEccCCCCCCCc
Confidence 6899999999863
No 217
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=25.83 E-value=1.1e+02 Score=26.10 Aligned_cols=15 Identities=53% Similarity=0.574 Sum_probs=13.4
Q ss_pred ceEEEEecccccccc
Q 012169 288 SVTLVLDLDETLVHS 302 (469)
Q Consensus 288 K~tLVLDLDeTLVhS 302 (469)
..+|||+=|||.|.+
T Consensus 39 ~~~lvLeeDGT~Vd~ 53 (81)
T cd06537 39 VLTLVLEEDGTAVDS 53 (81)
T ss_pred ceEEEEecCCCEEcc
Confidence 379999999999976
No 218
>PRK10671 copA copper exporting ATPase; Provisional
Probab=25.59 E-value=61 Score=37.76 Aligned_cols=85 Identities=14% Similarity=0.150 Sum_probs=58.7
Q ss_pred eeCccHHHHHHHhh-cceEEEEEcCCcHHHHHHHHHHhCCCCCceeEEEeecceeeeCCcccccccccCCCCCcEEEEEC
Q 012169 328 KQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDN 406 (469)
Q Consensus 328 ~lRPgL~eFLe~Ls-k~YEIVIfTAs~~~YA~~VLd~LDP~~klf~~rL~Re~C~~~~g~yiKDLs~LGrDLskvIIIDD 406 (469)
..||++.+.|+++. +.+.+++.|...+..|+.+++.++-.. +|.... +....+-++.++...++++.|-|
T Consensus 650 ~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~~-~~~~~~--------p~~K~~~i~~l~~~~~~v~~vGD 720 (834)
T PRK10671 650 PLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDE-VIAGVL--------PDGKAEAIKRLQSQGRQVAMVGD 720 (834)
T ss_pred cchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCE-EEeCCC--------HHHHHHHHHHHhhcCCEEEEEeC
Confidence 56999999999997 569999999999999999999988753 332111 11122333445556678999999
Q ss_pred CchhhccCCCceeee
Q 012169 407 SPQVFRLQVNNGIPI 421 (469)
Q Consensus 407 sp~s~~~qpeNgIpI 421 (469)
...-...-...++-|
T Consensus 721 g~nD~~al~~Agvgi 735 (834)
T PRK10671 721 GINDAPALAQADVGI 735 (834)
T ss_pred CHHHHHHHHhCCeeE
Confidence 986554333344433
No 219
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=25.22 E-value=40 Score=40.56 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=15.1
Q ss_pred CCceEEEEeccccccccc
Q 012169 286 RKSVTLVLDLDETLVHST 303 (469)
Q Consensus 286 ~kK~tLVLDLDeTLVhSs 303 (469)
.+-+.++|||||||+++.
T Consensus 73 ~~ikaVIFDlDGTLiDS~ 90 (1057)
T PLN02919 73 GKVSAVLFDMDGVLCNSE 90 (1057)
T ss_pred CCCCEEEECCCCCeEeCh
Confidence 344589999999999986
No 220
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=25.12 E-value=1.2e+02 Score=33.19 Aligned_cols=53 Identities=23% Similarity=0.380 Sum_probs=40.7
Q ss_pred eEEEeeCccHHHHHHHhhcce-EEEEEcCCcHHHHHHHHHHh-CC-------CCCceeEEEe
Q 012169 324 TVYVKQRPHLKTFLERVAEMF-EVVIFTASQSIYAAQLLDIL-DP-------DGKLISRRVY 376 (469)
Q Consensus 324 ~vyV~lRPgL~eFLe~Lsk~Y-EIVIfTAs~~~YA~~VLd~L-DP-------~~klf~~rL~ 376 (469)
.-||.+-|.+..+|+.+.+.- .+.+-|+|...|++.+++.+ ++ ++.+|+-++.
T Consensus 179 ~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv 240 (448)
T PF05761_consen 179 EKYIHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIV 240 (448)
T ss_dssp CCCEE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEE
T ss_pred HHHccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEE
Confidence 346788999999999999664 89999999999999999986 44 5678877665
No 221
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=24.46 E-value=1.1e+02 Score=25.80 Aligned_cols=15 Identities=53% Similarity=0.636 Sum_probs=13.4
Q ss_pred ceEEEEecccccccc
Q 012169 288 SVTLVLDLDETLVHS 302 (469)
Q Consensus 288 K~tLVLDLDeTLVhS 302 (469)
..+|||+=|||.|.+
T Consensus 40 ~~~lvL~eDGT~Vd~ 54 (78)
T cd06539 40 LVTLVLEEDGTVVDT 54 (78)
T ss_pred CcEEEEeCCCCEEcc
Confidence 469999999999976
No 222
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=21.84 E-value=1.4e+02 Score=25.43 Aligned_cols=16 Identities=44% Similarity=0.571 Sum_probs=13.9
Q ss_pred CceEEEEecccccccc
Q 012169 287 KSVTLVLDLDETLVHS 302 (469)
Q Consensus 287 kK~tLVLDLDeTLVhS 302 (469)
...+|||+-|||.|.+
T Consensus 41 ~~~~lvL~eDGT~Vdd 56 (80)
T cd06536 41 APITLVLAEDGTIVED 56 (80)
T ss_pred CceEEEEecCCcEEcc
Confidence 3579999999999976
No 223
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=21.59 E-value=1.1e+02 Score=32.20 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=31.4
Q ss_pred EEEeeCc-cHHHHHHHhhc------ceEEEEEcCCcHHHHHHHHHHh
Q 012169 325 VYVKQRP-HLKTFLERVAE------MFEVVIFTASQSIYAAQLLDIL 364 (469)
Q Consensus 325 vyV~lRP-gL~eFLe~Lsk------~YEIVIfTAs~~~YA~~VLd~L 364 (469)
+.++.|| ++..-|+.+.+ .++|+|+--|...-+..++...
T Consensus 6 v~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~ 52 (334)
T cd02514 6 VIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSF 52 (334)
T ss_pred EEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhh
Confidence 4578899 79999999984 4899999888877555665554
No 224
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=21.42 E-value=52 Score=30.12 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=12.5
Q ss_pred eEEEEeccccccccc
Q 012169 289 VTLVLDLDETLVHST 303 (469)
Q Consensus 289 ~tLVLDLDeTLVhSs 303 (469)
.+++||.||||....
T Consensus 2 ~~i~fDktGTLt~~~ 16 (215)
T PF00702_consen 2 DAICFDKTGTLTQGK 16 (215)
T ss_dssp SEEEEECCTTTBESH
T ss_pred eEEEEecCCCcccCe
Confidence 379999999997764
No 225
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=21.09 E-value=1.4e+02 Score=25.07 Aligned_cols=15 Identities=53% Similarity=0.691 Sum_probs=13.4
Q ss_pred ceEEEEecccccccc
Q 012169 288 SVTLVLDLDETLVHS 302 (469)
Q Consensus 288 K~tLVLDLDeTLVhS 302 (469)
..+|||+=|||.|.+
T Consensus 38 ~~~l~L~eDGT~Vdd 52 (74)
T smart00266 38 PVTLVLEEDGTIVDD 52 (74)
T ss_pred CcEEEEecCCcEEcc
Confidence 569999999999976
No 226
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=20.69 E-value=1.3e+02 Score=25.47 Aligned_cols=15 Identities=47% Similarity=0.430 Sum_probs=13.2
Q ss_pred ceEEEEecccccccc
Q 012169 288 SVTLVLDLDETLVHS 302 (469)
Q Consensus 288 K~tLVLDLDeTLVhS 302 (469)
..+|||+-|||.|.+
T Consensus 39 ~~~lvL~eDGT~Vd~ 53 (79)
T cd06538 39 ISSLVLDEDGTGVDT 53 (79)
T ss_pred ccEEEEecCCcEEcc
Confidence 369999999999976
No 227
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=20.55 E-value=1.4e+02 Score=25.11 Aligned_cols=16 Identities=50% Similarity=0.524 Sum_probs=13.8
Q ss_pred CceEEEEecccccccc
Q 012169 287 KSVTLVLDLDETLVHS 302 (469)
Q Consensus 287 kK~tLVLDLDeTLVhS 302 (469)
...+|||+-|||.|..
T Consensus 39 ~~~~lvL~eDGTeVdd 54 (78)
T cd01615 39 APVTLVLEEDGTEVDD 54 (78)
T ss_pred CCeEEEEeCCCcEEcc
Confidence 4569999999999976
Done!