BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012172
(469 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z90|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g03250, A Putative Udp-Glucose Pyrophosphorylase
pdb|1Z90|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g03250, A Putative Udp-Glucose Pyrophosphorylase
pdb|2Q4J|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g03250, A
Putative Udp-Glucose Pyrophosphorylase
pdb|2Q4J|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g03250, A
Putative Udp-Glucose Pyrophosphorylase
Length = 469
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/469 (80%), Positives = 414/469 (88%)
Query: 1 MATDAEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPC 60
MA E L QLKSAV GL ++SE+EK+GFI+LV+RYLSGEAQH+EWSKIQTPTD+IVVP
Sbjct: 1 MAATTENLPQLKSAVDGLTEMSESEKSGFISLVSRYLSGEAQHIEWSKIQTPTDEIVVPY 60
Query: 61 DSLAPVPEDPAEXXXXXXXXXXXXXXXXXXXXMGCTGPKSVIEVRNGLTFLDLIVIQIEN 120
+ + PV +D AE MGCTGPKSVIEVR+GLTFLDLIVIQIEN
Sbjct: 61 EKMTPVSQDVAETKNLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRDGLTFLDLIVIQIEN 120
Query: 121 LNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKG 180
LN KYGC VPL+LMNSFNTHDDT KI+EKY+ SNV+IHTFNQS+YPR+ AD+FVP P KG
Sbjct: 121 LNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTNSNVDIHTFNQSKYPRVVADEFVPWPSKG 180
Query: 181 KTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNK 240
KTDK+GWYPPGHGDVFP+LMNSGKLD +SQGKEYVF ANSDNLGAIVDL IL HLIQNK
Sbjct: 181 KTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTILKHLIQNK 240
Query: 241 NEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVN 300
NEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVN
Sbjct: 241 NEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVN 300
Query: 301 LKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVK 360
LKAIK+LVEADALKMEIIPNPKEVDG+KVLQLETAAGAAIRFFD+AIG NV RSRFLPVK
Sbjct: 301 LKAIKKLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGVNVPRSRFLPVK 360
Query: 361 ATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELD 420
A+SDLLLVQSDLYTL DGFVTRN+AR NP+NP+IELGPEFKKV FLSRFKSIPSI+ELD
Sbjct: 361 ASSDLLLVQSDLYTLVDGFVTRNKARTNPSNPSIELGPEFKKVATFLSRFKSIPSIVELD 420
Query: 421 SLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 469
SLKV+GDVWFG++I LKGKVT+AAKSG KLEIPD AV+ENK INGP DL
Sbjct: 421 SLKVSGDVWFGSSIVLKGKVTVAAKSGVKLEIPDRAVVENKNINGPEDL 469
>pdb|2ICX|A Chain A, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Utp
pdb|2ICX|B Chain B, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Utp
pdb|2ICY|A Chain A, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Udp- Glucose
pdb|2ICY|B Chain B, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Udp- Glucose
Length = 469
Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/468 (80%), Positives = 413/468 (88%)
Query: 2 ATDAEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCD 61
A E L QLKSAV GL ++SE+EK+GFI+LV+RYLSGEAQH+EWSKIQTPTD+IVVP +
Sbjct: 2 AATTENLPQLKSAVDGLTEMSESEKSGFISLVSRYLSGEAQHIEWSKIQTPTDEIVVPYE 61
Query: 62 SLAPVPEDPAEXXXXXXXXXXXXXXXXXXXXMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121
+ PV +D AE MGCTGPKSVIEVR+GLTFLDLIVIQIENL
Sbjct: 62 KMTPVSQDVAETKNLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRDGLTFLDLIVIQIENL 121
Query: 122 NAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGK 181
N KYGC VPL+LMNSFNTHDDT KI+EKY+ SNV+IHTFNQS+YPR+ AD+FVP P KGK
Sbjct: 122 NNKYGCKVPLVLMNSFNTHDDTHKIVEKYTNSNVDIHTFNQSKYPRVVADEFVPWPSKGK 181
Query: 182 TDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKN 241
TDK+GWYPPGHGDVFP+LMNSGKLD +SQGKEYVF ANSDNLGAIVDL IL HLIQNKN
Sbjct: 182 TDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTILKHLIQNKN 241
Query: 242 EYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNL 301
EYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNL
Sbjct: 242 EYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNL 301
Query: 302 KAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKA 361
KAIK+LVEADALKMEIIPNPKEVDG+KVLQLETAAGAAIRFFD+AIG NV RSRFLPVKA
Sbjct: 302 KAIKKLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGVNVPRSRFLPVKA 361
Query: 362 TSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDS 421
+SDLLLVQSDLYTL DGFVTRN+AR NP+NP+IELGPEFKKV FLSRFKSIPSI+ELDS
Sbjct: 362 SSDLLLVQSDLYTLVDGFVTRNKARTNPSNPSIELGPEFKKVATFLSRFKSIPSIVELDS 421
Query: 422 LKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 469
LKV+GDVWFG++I LKGKVT+AAKSG KLEIPD AV+ENK INGP DL
Sbjct: 422 LKVSGDVWFGSSIVLKGKVTVAAKSGVKLEIPDRAVVENKNINGPEDL 469
>pdb|2I5K|A Chain A, Crystal Structure Of Ugp1p
pdb|2I5K|B Chain B, Crystal Structure Of Ugp1p
Length = 488
Score = 466 bits (1199), Expect = e-131, Method: Compositional matrix adjust.
Identities = 242/449 (53%), Positives = 309/449 (68%), Gaps = 11/449 (2%)
Query: 23 ENEKNGFINLVARYLSGEAQH--VEWSKIQTPTDKIVVPCDSLAPVPEDPAEXXXXXXXX 80
ENE + F L RYL ++ +EW KI++P VV + ++ PE+ +
Sbjct: 38 ENELDSFFTLFRRYLVEKSSRTTLEWDKIKSPNPDEVVKYEIISQQPENVSNLSKLAVLK 97
Query: 81 XXXXXXXXXXXXMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTH 140
MGC GPKSVIEVR G TFLDL V QIE LN +Y +VPLLLMNSFNT
Sbjct: 98 LNGGLGTS----MGCVGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTD 153
Query: 141 DDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLM 200
DT +I+KYS + + I +FNQS++PR+ D +P+P + + D WYPPGHGD+F SL
Sbjct: 154 KDTEHLIKKYSANRIRIRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLH 213
Query: 201 NSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTL 260
SG+LDALI+QG+E +F +N DNLGA VDLKILNH+I+ EY ME+T KT ADVKGGTL
Sbjct: 214 VSGELDALIAQGREILFVSNGDNLGATVDLKILNHMIETGAEYIMELTDKTRADVKGGTL 273
Query: 261 ISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPN 320
ISY+G+V+LLE+AQVP EH++EFK+I KF FNTNNLW+NLKA+KRL+E+ L+MEIIPN
Sbjct: 274 ISYDGQVRLLEVAQVPKEHIDEFKNIRKFTNFNTNNLWINLKAVKRLIESSNLEMEIIPN 333
Query: 321 PKEV--DG--IKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTLA 376
K + DG I VLQLETA GAAIR FD A G V RSRFLPVK SDLLLV+SDL+ L
Sbjct: 334 QKTITRDGHEINVLQLETACGAAIRHFDGAHGVVVPRSRFLPVKTCSDLLLVKSDLFRLE 393
Query: 377 DGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITL 436
G + + +R P NP I+LG FKKV F +R IP I+ELD L +TG+V+ G ++TL
Sbjct: 394 HGSLKLDPSRFGP-NPLIKLGSHFKKVSGFNARIPHIPKIVELDHLTITGNVFLGKDVTL 452
Query: 437 KGKVTIAAKSGEKLEIPDGAVLENKEING 465
+G V I G K++IP+G++LEN + G
Sbjct: 453 RGTVIIVCSDGHKIDIPNGSILENVVVTG 481
>pdb|3R2W|A Chain A, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|B Chain B, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|C Chain C, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|D Chain D, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R3I|A Chain A, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|B Chain B, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|C Chain C, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|D Chain D, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
Length = 528
Score = 457 bits (1176), Expect = e-129, Method: Compositional matrix adjust.
Identities = 237/452 (52%), Positives = 306/452 (67%), Gaps = 19/452 (4%)
Query: 27 NGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLAPVPED-----PAEXXXXXXXXX 81
+GF L R+L + V+W KIQ P P DS+ P + P
Sbjct: 76 DGFRKLFHRFLQEKGPSVDWGKIQRP------PEDSIQPYEKIKARGLPDNISSVLNKLV 129
Query: 82 XXXXXXXXXXXMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHD 141
MGC GPKS+I VRN TFLDL V QIE+LN Y +VPL+LMNSFNT +
Sbjct: 130 VVKLNGGLGTSMGCKGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDE 189
Query: 142 DTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLP---CKGKTDKDGWYPPGHGDVFPS 198
DT KI++KY+ V+I+TFNQS+YPR+ + +P+ + + WYPPGHGD++ S
Sbjct: 190 DTKKILQKYNHCRVKIYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYAS 249
Query: 199 LMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKN----EYCMEVTPKTLAD 254
NSG LD I +GKEY+F +N DNLGA VDL ILNHL+ N E+ MEVT KT AD
Sbjct: 250 FYNSGLLDTFIGEGKEYIFVSNIDNLGATVDLYILNHLMNPPNGKRCEFVMEVTNKTRAD 309
Query: 255 VKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALK 314
VKGGTL YEGK++L+EIAQVP HV+EFKS+ KFKIFNTNNLW++L A+KRL E +A+
Sbjct: 310 VKGGTLTQYEGKLRLVEIAQVPKAHVDEFKSVSKFKIFNTNNLWISLAAVKRLQEQNAID 369
Query: 315 MEIIPNPKEVDG-IKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLY 373
MEII N K +DG + V+QLETA GAAI+ F++++G NV RSRFLPVK TSDLLLV S+LY
Sbjct: 370 MEIIVNAKTLDGGLNVIQLETAVGAAIKSFENSLGINVPRSRFLPVKTTSDLLLVMSNLY 429
Query: 374 TLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGAN 433
+L G +T +E R+ P P ++LG F KV ++L RF+SIP ++ELD L V+GDV FG N
Sbjct: 430 SLNAGSLTMSEKREFPTVPLVKLGSSFTKVQDYLRRFESIPDMLELDHLTVSGDVTFGKN 489
Query: 434 ITLKGKVTIAAKSGEKLEIPDGAVLENKEING 465
++LKG V I A G++++IP GAVLENK ++G
Sbjct: 490 VSLKGTVIIIANHGDRIDIPPGAVLENKIVSG 521
>pdb|3GUE|A Chain A, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
pdb|3GUE|B Chain B, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
Length = 484
Score = 250 bits (638), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 147/396 (37%), Positives = 223/396 (56%), Gaps = 29/396 (7%)
Query: 93 MGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSK 152
MG GPKS+++V+NG TFLD +Q+E+ CNVP +LMNSF+T +T + KY
Sbjct: 90 MGLNGPKSLLQVKNGQTFLDFTALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLRKYPT 149
Query: 153 ------SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLD 206
S++E+ Q++ P++ D+F P+ + + W PPGHGDV+ L +SGKLD
Sbjct: 150 LYEVFDSDIELM---QNRVPKIRQDNFFPVTYEADPTCE-WVPPGHGDVYTVLYSSGKLD 205
Query: 207 ALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLI----- 261
L+ +G Y+F +N DNLGA +D+++L+++ + + + MEV +T +D KGG L
Sbjct: 206 YLLGKGYRYMFISNGDNLGATLDVRLLDYMHEKQLGFLMEVCRRTESDKKGGHLAYKDVI 265
Query: 262 -----SYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEAD--ALK 314
+ L E AQ P E + F++I K FNTNN+W+NL +K++++ L+
Sbjct: 266 DETTGQTRRRFVLRESAQCPKEDEDSFQNIAKHCFFNTNNIWINLMELKKMMDEQLGVLR 325
Query: 315 MEIIPNPKEVD-----GIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQ 369
+ ++ NPK V+ KV QLE A GAAI FD + V R RF PVK SDLL ++
Sbjct: 326 LPVMRNPKTVNPQDSQSTKVYQLEVAMGAAISLFDRSEAVVVPRERFAPVKTCSDLLALR 385
Query: 370 SDLYTLADGFVTRNEARKNPANPTIEL-GPEFKKVGNFLSRFK-SIPSIIELDSLKVTGD 427
SD Y + + +N P I+L G +K + F K +PS+ + SL V G
Sbjct: 386 SDAYQVTEDQRLVLCEERNGKPPAIDLDGEHYKMIDGFEKLVKGGVPSLRQCTSLTVRGL 445
Query: 428 VWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEI 463
V FGA+++++G V I E L I G VL+N+ +
Sbjct: 446 VEFGADVSVRGNVVIKNLKEEPLIIGSGRVLDNEVV 481
>pdb|2OEF|A Chain A, Open And Closed Structures Of The Udp-Glucose
Pyrophosphorylase From Leishmania Major
pdb|2OEG|A Chain A, Open And Closed Structures Of The Udp-Glucose
Pyrophosphorylase From Leishmania Major
Length = 505
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 137/391 (35%), Positives = 193/391 (49%), Gaps = 31/391 (7%)
Query: 99 KSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEK-----YSKS 153
K+++EV++G TFLD +Q++ L ++ L +SFNT T ++ Y
Sbjct: 95 KTLLEVKDGKTFLDFTALQVQYLRQHCSEHLRFXLXDSFNTSASTKSFLKARYPWLYQVF 154
Query: 154 NVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGK 213
+ E+ Q+Q P++ D P + W PPGHGD++ +L SGKL L+ QG
Sbjct: 155 DSEVE-LXQNQVPKILQDTLEPAAW-AENPAYEWAPPGHGDIYTALYGSGKLQELVEQGY 212
Query: 214 EYVFAANSDNLGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISY---------- 263
Y F +N DNLGA +D ++L + + K ++ EV +T +D KGG L
Sbjct: 213 RYXFVSNGDNLGATIDKRVLAYXEKEKIDFLXEVCRRTESDKKGGHLARQTVYVKGKDGQ 272
Query: 264 ---EGKVQLL-EIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVE--ADALKMEI 317
E +V LL E AQ P F+ I K+ FNTNNLW+ L + + L + +
Sbjct: 273 PDAEKRVLLLRESAQCPKADXESFQDINKYSFFNTNNLWIRLPVLLETXQEHGGTLPLPV 332
Query: 318 IPNPKEVDGI-----KVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDL 372
I N K VD KV QLETA GAAI F+ A V RSRF PVK +DLL ++SD
Sbjct: 333 IRNEKTVDSSNSASPKVYQLETAXGAAIAXFESASAIVVPRSRFAPVKTCADLLALRSDA 392
Query: 373 YTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRF--KSIPSIIELDSLKVTGDVWF 430
Y + D F + R + P ++L K N + +PS++E + V G V F
Sbjct: 393 YVVTDDFRLVLDDRCHGHPPVVDLDSAHYKXXNGFEKLVQHGVPSLVECKRVTVKGLVQF 452
Query: 431 GANITLKGKVTIA-AKSGEKLEIPDGAVLEN 460
GA L G VTI S IPDGA L +
Sbjct: 453 GAGNVLTGTVTIENTDSASAFVIPDGAKLND 483
>pdb|3OC9|A Chain A, Crystal Structure Of Putative Udp-N-Acetylglucosamine
Pyrophosphorylase From Entamoeba Histolytica
Length = 405
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 123/254 (48%), Gaps = 34/254 (13%)
Query: 98 PKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSK----- 152
PKS+ ++ + +++++ L ++Y +++ T+++T + I Y K
Sbjct: 65 PKSIFQMTSER------LLRLQELASEYSHQKNVMIHWFLMTNEETIEEINNYFKEHQYF 118
Query: 153 --SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALIS 210
S+ +IH F Q P + DF K DK P GHG +F +L ++G L+ +
Sbjct: 119 GLSSEQIHCFPQGMLPVV---DFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNE 175
Query: 211 QGKEYVFAANSDN-LGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQL 269
+G +Y A N DN L VD ++ ++ ++E C+++ K + K G L+ + ++++
Sbjct: 176 KGIKYSVAHNVDNILCKDVDPNMIGYMDLLQSEICIKIVKKGFKEEKVGVLVKEQERIKV 235
Query: 270 LEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKME------------- 316
+E ++ DE +N+ S +F I+N ++ +N + L +A ++
Sbjct: 236 VEYTELTDE-LNKQLSNGEF-IYNCGHISINGYSTSFLEKAAEYQLPYHIAKKKVPFVNE 293
Query: 317 --IIPNPKEVDGIK 328
I+ +P E +GIK
Sbjct: 294 QGIVIHPSENNGIK 307
>pdb|3OGZ|A Chain A, Protein Structure Of Usp From L. Major In Apo-Form
Length = 630
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
Query: 102 IEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFN 161
+E T+L + + + K VP ++M S +THD T +++ + +H
Sbjct: 139 VETATNTTYLAYYLRWAQRVGGK---EVPFVIMTSDDTHDRTLQLLRELQLEVPNLHVLK 195
Query: 162 QSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNS 202
Q Q C D +T K P GHGDV + N+
Sbjct: 196 QGQV--FCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNA 234
>pdb|3OH0|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Triphosphate
pdb|3OH1|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Diphosphate-Galacturonic Acid
pdb|3OH2|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Diphosphate-Galactose
pdb|3OH3|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'-Diphosphate -Arabinose
pdb|3OH4|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'-Diphosphate Glucose
Length = 641
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
Query: 102 IEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFN 161
+E T+L + + + K VP ++M S +THD T +++ + +H
Sbjct: 139 VETATNTTYLAYYLRWAQRVGGK---EVPFVIMTSDDTHDRTLQLLRELQLEVPNLHVLK 195
Query: 162 QSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNS 202
Q Q C D +T K P GHGDV + N+
Sbjct: 196 QGQV--FCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNA 234
>pdb|3ACL|A Chain A, Crystal Structure Of Human Pirin In Complex With Triphenyl
Compound
Length = 296
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 296 NLWVNLKAIKRLVEA--DALKMEIIPNPKEVDGIKVLQLETAA---------GAAIRFFD 344
LWVNL++ +++VE LK E IP P + DG+ V + A + D
Sbjct: 121 QLWVNLRSSEKMVEPQYQELKSEEIPKPSK-DGVTVAVISGEALGIKSKVYTRTPTLYLD 179
Query: 345 HAIGCNVHRSRFLPVKATSDLLLVQSDLYTLAD 377
+ S+ +P TS + + D+Y D
Sbjct: 180 FKLDPGAKHSQPIPKGWTSFIYTISGDVYIGPD 212
>pdb|1J1L|A Chain A, Crystal Structure Of Human Pirin: A Bcl-3 And Nuclear
Factor I Interacting Protein And A Cupin Superfamily
Member
Length = 290
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 12/93 (12%)
Query: 296 NLWVNLKAIKRLVEA--DALKMEIIPNPKEVDGIKVLQLETAA---------GAAIRFFD 344
LWVNL++ ++ VE LK E IP P + DG+ V + A + D
Sbjct: 115 QLWVNLRSSEKXVEPQYQELKSEEIPKPSK-DGVTVAVISGEALGIKSKVYTRTPTLYLD 173
Query: 345 HAIGCNVHRSRFLPVKATSDLLLVQSDLYTLAD 377
+ S+ +P TS + + D+Y D
Sbjct: 174 FKLDPGAKHSQPIPKGWTSFIYTISGDVYIGPD 206
>pdb|3UPI|A Chain A, Synthesis Of Novel 4,5-Dihydrofurano Indoles And Their
Evaluation As Hcv Ns5b Polymerase Inhibitors
pdb|3UPI|B Chain B, Synthesis Of Novel 4,5-Dihydrofurano Indoles And Their
Evaluation As Hcv Ns5b Polymerase Inhibitors
Length = 585
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 10/121 (8%)
Query: 101 VIEVRNGLTFLDLIVIQIENLNAKYGC----NVPLLLMNSFNTHDDTSKIIEKYSKSNV- 155
+IE +GL+ L +N C VP L +K++ + ++ +
Sbjct: 462 IIERLHGLSAFTLHSYSPGEINRVASCLRKLGVPPLRTWRHRARSVRAKLLSQGGRAAIC 521
Query: 156 EIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGH--GDVFPSLMNSGKLDALISQGK 213
+ FN + +L P+P + D GW+ G+ GD++ SL + + L QG
Sbjct: 522 GRYLFNWAVRTKL---KLTPIPAASQLDLSGWFVAGYSGGDIYHSLSRARPRENLYFQGL 578
Query: 214 E 214
E
Sbjct: 579 E 579
>pdb|3ICO|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Tuberculosis
pdb|3ICO|B Chain B, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Tuberculosis
pdb|3ICO|C Chain C, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Tuberculosis
pdb|3ICO|D Chain D, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Tuberculosis
Length = 268
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 35 RYLSGEAQHVEWSKIQ 50
RYLS +AQ +EWSK+
Sbjct: 72 RYLSAQAQQIEWSKVH 87
>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|C Chain C, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 263
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 156 EIHTFNQSQYPRLCADDFVPLPCKG-KTDKDGWYPPGHGDVFPSLMNSGKLDA 207
EI++F + YPR+ D VP KG K D PP V+ + N LDA
Sbjct: 191 EIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPA---VYEVMKNCWHLDA 240
>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 269
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 156 EIHTFNQSQYPRLCADDFVPLPCKG-KTDKDGWYPPGHGDVFPSLMNSGKLDA 207
EI++F + YPR+ D VP KG K D PP V+ + N LDA
Sbjct: 197 EIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPA---VYEVMKNCWHLDA 246
>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In
Complex With Inhibitor Staurosporine
Length = 278
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 156 EIHTFNQSQYPRLCADDFVPLPCKG-KTDKDGWYPPGHGDVFPSLMNSGKLDALI 209
EI++F + YPR+ D VP KG K D PP V+ + N LDA +
Sbjct: 206 EIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPA---VYEVMKNCWHLDAAM 257
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 156 EIHTFNQSQYPRLCADDFVPLPCKG-KTDKDGWYPPGHGDVFPSLMNSGKLDA 207
EI++F + YPR+ D VP KG K D PP V+ + N LDA
Sbjct: 378 EIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPA---VYDVMKNCWHLDA 427
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,831,821
Number of Sequences: 62578
Number of extensions: 569551
Number of successful extensions: 1441
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1414
Number of HSP's gapped (non-prelim): 18
length of query: 469
length of database: 14,973,337
effective HSP length: 102
effective length of query: 367
effective length of database: 8,590,381
effective search space: 3152669827
effective search space used: 3152669827
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)