Query 012172
Match_columns 469
No_of_seqs 268 out of 1011
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 23:48:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012172.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012172hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2638 UDP-glucose pyrophosph 100.0 2E-113 4E-118 853.1 34.0 461 5-469 32-495 (498)
2 PLN02474 UTP--glucose-1-phosph 100.0 5E-112 1E-116 881.8 45.3 467 3-469 3-469 (469)
3 PF01704 UDPGP: UTP--glucose-1 100.0 1.3E-98 3E-103 779.6 22.4 413 25-437 1-420 (420)
4 PLN02830 UDP-sugar pyrophospho 100.0 1.1E-88 2.3E-93 729.0 36.4 453 5-461 53-572 (615)
5 cd00897 UGPase_euk Eukaryotic 100.0 3E-82 6.6E-87 629.9 29.6 299 77-375 1-300 (300)
6 PLN02435 probable UDP-N-acetyl 100.0 5E-76 1.1E-80 615.7 29.4 385 6-401 47-470 (493)
7 COG4284 UDP-glucose pyrophosph 100.0 3.5E-74 7.6E-79 588.4 29.2 435 5-466 28-472 (472)
8 PTZ00339 UDP-N-acetylglucosami 100.0 5.6E-69 1.2E-73 564.2 30.6 389 6-401 23-461 (482)
9 cd04193 UDPGlcNAc_PPase UDPGlc 100.0 1.9E-68 4.1E-73 539.2 25.5 293 68-363 2-323 (323)
10 cd06424 UGGPase UGGPase cataly 100.0 7.1E-64 1.5E-68 499.8 23.6 281 80-362 1-314 (315)
11 cd04180 UGPase_euk_like Eukary 100.0 2.9E-59 6.3E-64 461.5 26.3 251 80-361 1-266 (266)
12 KOG2388 UDP-N-acetylglucosamin 100.0 2.3E-58 5.1E-63 470.7 15.3 384 5-401 27-448 (477)
13 COG1207 GlmU N-acetylglucosami 100.0 4.9E-43 1.1E-47 353.4 27.2 311 79-469 2-329 (460)
14 PRK14356 glmU bifunctional N-a 99.9 2.3E-21 5E-26 205.5 28.8 312 79-466 5-327 (456)
15 PRK14359 glmU bifunctional N-a 99.9 5.2E-20 1.1E-24 193.6 32.2 307 79-467 2-322 (430)
16 PRK14358 glmU bifunctional N-a 99.9 1E-19 2.2E-24 194.5 27.7 313 78-468 6-330 (481)
17 PRK09451 glmU bifunctional N-a 99.9 2.6E-19 5.7E-24 190.0 27.6 309 79-467 5-324 (456)
18 PRK05293 glgC glucose-1-phosph 99.8 3.7E-19 7.9E-24 184.5 25.5 326 78-468 2-350 (380)
19 PRK14352 glmU bifunctional N-a 99.8 1.2E-18 2.6E-23 186.3 28.8 292 78-443 3-305 (482)
20 PRK14355 glmU bifunctional N-a 99.8 2.3E-18 5E-23 183.0 29.1 314 79-468 3-328 (459)
21 PRK00844 glgC glucose-1-phosph 99.8 3.2E-18 7E-23 179.3 27.2 344 76-469 2-374 (407)
22 PRK14353 glmU bifunctional N-a 99.8 7.8E-18 1.7E-22 178.1 29.1 236 79-373 5-243 (446)
23 TIGR01173 glmU UDP-N-acetylglu 99.8 8.6E-18 1.9E-22 177.6 28.2 307 81-467 2-320 (451)
24 COG1208 GCD1 Nucleoside-diphos 99.8 2.4E-17 5.3E-22 169.9 27.5 307 80-469 2-322 (358)
25 TIGR01208 rmlA_long glucose-1- 99.8 2.9E-17 6.4E-22 168.7 27.7 317 82-468 2-330 (353)
26 PRK14360 glmU bifunctional N-a 99.8 2.9E-17 6.3E-22 173.8 27.3 232 80-374 2-238 (450)
27 PRK00725 glgC glucose-1-phosph 99.8 2.8E-17 6.1E-22 173.2 27.0 342 73-469 9-386 (425)
28 TIGR02092 glgD glucose-1-phosp 99.8 1.6E-17 3.5E-22 171.6 23.9 320 79-468 2-346 (369)
29 PRK14357 glmU bifunctional N-a 99.8 2.7E-17 5.8E-22 174.1 26.1 226 81-373 2-230 (448)
30 PRK14354 glmU bifunctional N-a 99.8 2.3E-16 5E-21 167.3 27.8 234 79-373 2-240 (458)
31 PRK02862 glgC glucose-1-phosph 99.8 3.9E-16 8.4E-21 164.8 27.2 336 79-469 3-386 (429)
32 TIGR02091 glgC glucose-1-phosp 99.7 6.3E-16 1.4E-20 159.2 25.4 331 82-469 1-353 (361)
33 PLN02917 CMP-KDO synthetase 99.7 1.5E-15 3.4E-20 152.4 19.6 229 78-373 46-288 (293)
34 KOG1322 GDP-mannose pyrophosph 99.7 4.8E-15 1E-19 146.2 21.8 187 78-309 8-199 (371)
35 PLN02241 glucose-1-phosphate a 99.7 2.3E-14 4.9E-19 151.7 26.0 262 78-374 2-282 (436)
36 KOG1460 GDP-mannose pyrophosph 99.7 7.1E-15 1.5E-19 143.0 18.9 324 79-466 2-346 (407)
37 PF00483 NTP_transferase: Nucl 99.6 1.5E-14 3.2E-19 140.6 17.7 236 82-373 2-246 (248)
38 PRK15480 glucose-1-phosphate t 99.6 2.9E-13 6.2E-18 136.0 23.2 247 79-387 3-257 (292)
39 cd02540 GT2_GlmU_N_bac N-termi 99.6 2.8E-13 6.1E-18 130.0 20.5 224 82-365 1-229 (229)
40 TIGR01105 galF UTP-glucose-1-p 99.6 1.2E-13 2.5E-18 139.1 17.9 232 79-371 3-275 (297)
41 TIGR02623 G1P_cyt_trans glucos 99.5 2.5E-12 5.4E-17 126.6 21.5 240 82-375 2-247 (254)
42 cd04189 G1P_TT_long G1P_TT_lon 99.5 8.6E-12 1.9E-16 120.5 23.7 230 80-373 1-234 (236)
43 TIGR01207 rmlA glucose-1-phosp 99.5 7.3E-12 1.6E-16 125.5 23.2 242 82-386 2-252 (286)
44 PRK10122 GalU regulator GalF; 99.5 7.8E-12 1.7E-16 125.9 23.2 236 78-372 2-276 (297)
45 cd02538 G1P_TT_short G1P_TT_sh 99.5 9.2E-12 2E-16 121.0 22.6 231 81-374 2-239 (240)
46 cd06426 NTP_transferase_like_2 99.5 5.7E-12 1.2E-16 120.3 20.3 215 82-368 1-219 (220)
47 cd06428 M1P_guanylylT_A_like_N 99.4 6E-12 1.3E-16 123.7 17.8 177 82-307 1-190 (257)
48 cd06425 M1P_guanylylT_B_like_N 99.4 2.7E-11 5.8E-16 117.2 21.2 223 81-371 2-231 (233)
49 PRK05450 3-deoxy-manno-octulos 99.4 4.3E-11 9.3E-16 116.5 20.4 235 79-372 2-244 (245)
50 cd06915 NTP_transferase_WcbM_l 99.4 4.6E-11 9.9E-16 113.7 20.1 216 82-368 1-222 (223)
51 cd04181 NTP_transferase NTP_tr 99.4 1.9E-11 4E-16 116.0 16.9 176 82-309 1-181 (217)
52 COG0448 GlgC ADP-glucose pyrop 99.3 8.8E-11 1.9E-15 119.9 20.5 321 78-469 4-354 (393)
53 cd02517 CMP-KDO-Synthetase CMP 99.3 2.8E-10 6.2E-15 110.3 22.9 228 79-370 1-238 (239)
54 PRK13389 UTP--glucose-1-phosph 99.3 3.1E-10 6.8E-15 114.6 23.4 245 80-372 9-279 (302)
55 cd02509 GDP-M1P_Guanylyltransf 99.3 4.9E-11 1.1E-15 118.8 16.5 190 81-310 2-208 (274)
56 cd02541 UGPase_prokaryotic Pro 99.3 2.6E-10 5.6E-15 112.5 20.4 229 81-372 2-264 (267)
57 cd02524 G1P_cytidylyltransfera 99.3 6.4E-10 1.4E-14 109.1 22.0 235 82-373 1-246 (253)
58 cd02523 PC_cytidylyltransferas 99.3 1.5E-10 3.2E-15 111.6 16.8 223 82-368 1-228 (229)
59 COG1209 RfbA dTDP-glucose pyro 99.3 6.5E-10 1.4E-14 108.3 20.7 229 82-374 3-237 (286)
60 TIGR01099 galU UTP-glucose-1-p 99.3 1.4E-10 3E-15 113.9 16.5 195 81-307 2-213 (260)
61 cd04197 eIF-2B_epsilon_N The N 99.3 8E-11 1.7E-15 112.9 13.9 183 81-302 2-215 (217)
62 cd06422 NTP_transferase_like_1 99.2 5.8E-10 1.2E-14 106.8 17.5 173 82-307 2-180 (221)
63 cd04183 GT2_BcE_like GT2_BcbE_ 99.2 4.6E-10 9.9E-15 108.2 16.4 222 82-365 1-230 (231)
64 cd02508 ADP_Glucose_PP ADP-glu 99.2 2.6E-10 5.6E-15 107.9 13.5 156 82-310 1-165 (200)
65 TIGR01479 GMP_PMI mannose-1-ph 99.1 8.8E-10 1.9E-14 117.8 15.7 190 81-310 2-210 (468)
66 TIGR00453 ispD 2-C-methyl-D-er 99.0 5.3E-09 1.2E-13 99.9 14.6 211 81-371 1-216 (217)
67 PF14134 DUF4301: Domain of un 98.9 1E-08 2.2E-13 107.1 12.6 251 93-367 161-509 (513)
68 cd04198 eIF-2B_gamma_N The N-t 98.9 2.8E-08 6E-13 95.2 14.1 130 81-249 2-137 (214)
69 PRK13368 3-deoxy-manno-octulos 98.9 9.3E-08 2E-12 92.6 17.5 223 79-370 2-236 (238)
70 cd02513 CMP-NeuAc_Synthase CMP 98.8 1.5E-07 3.2E-12 89.9 16.3 216 79-370 1-221 (223)
71 PRK00155 ispD 2-C-methyl-D-ery 98.8 1.6E-07 3.5E-12 90.5 16.3 216 78-373 2-223 (227)
72 PF12804 NTP_transf_3: MobA-li 98.8 5.5E-08 1.2E-12 88.2 11.3 99 82-227 1-101 (160)
73 cd02516 CDP-ME_synthetase CDP- 98.7 2.7E-07 5.8E-12 88.0 13.5 42 80-122 1-42 (218)
74 cd02507 eIF-2B_gamma_N_like Th 98.7 3.1E-07 6.7E-12 88.1 13.6 158 82-278 3-180 (216)
75 TIGR00454 conserved hypothetic 98.6 3.2E-07 6.9E-12 86.1 11.5 61 81-149 2-62 (183)
76 COG1213 Predicted sugar nucleo 98.6 3.9E-06 8.4E-11 80.7 18.7 66 80-151 4-69 (239)
77 TIGR00466 kdsB 3-deoxy-D-manno 98.5 8.6E-06 1.9E-10 79.5 19.1 225 82-365 2-237 (238)
78 PRK13385 2-C-methyl-D-erythrit 98.5 3.8E-07 8.1E-12 88.3 7.9 67 79-150 2-68 (230)
79 cd04182 GT_2_like_f GT_2_like_ 98.4 2.1E-06 4.7E-11 79.1 10.0 58 80-146 1-58 (186)
80 KOG1462 Translation initiation 98.4 4.1E-06 8.9E-11 85.2 12.4 67 79-151 9-78 (433)
81 COG2266 GTP:adenosylcobinamide 98.4 6.9E-07 1.5E-11 82.0 6.1 60 81-149 2-61 (177)
82 TIGR03310 matur_ygfJ molybdenu 98.3 3.8E-06 8.2E-11 78.0 10.1 48 82-137 2-49 (188)
83 cd02503 MobA MobA catalyzes th 98.3 6.5E-06 1.4E-10 76.2 10.9 39 80-121 1-39 (181)
84 COG0836 {ManC} Mannose-1-phosp 98.2 3.5E-05 7.5E-10 77.2 15.8 194 80-310 2-212 (333)
85 PRK15460 cpsB mannose-1-phosph 98.2 4.3E-05 9.3E-10 81.8 16.7 191 79-310 5-219 (478)
86 PLN02728 2-C-methyl-D-erythrit 98.2 2.1E-06 4.6E-11 84.6 5.8 43 78-121 23-65 (252)
87 PRK09382 ispDF bifunctional 2- 98.2 1.8E-05 3.8E-10 82.5 12.7 44 78-122 4-47 (378)
88 PRK02726 molybdopterin-guanine 98.2 1.7E-05 3.6E-10 75.3 11.4 40 79-121 7-46 (200)
89 PF01128 IspD: 2-C-methyl-D-er 98.2 3.3E-06 7.1E-11 81.6 6.3 64 80-149 1-65 (221)
90 PRK00560 molybdopterin-guanine 98.1 4.3E-06 9.4E-11 79.2 6.7 41 78-121 7-48 (196)
91 TIGR03202 pucB xanthine dehydr 98.1 8.5E-06 1.8E-10 76.3 8.0 38 81-121 2-39 (190)
92 TIGR02665 molyb_mobA molybdopt 98.1 2.7E-05 5.9E-10 72.3 11.3 39 80-120 1-39 (186)
93 PRK14489 putative bifunctional 98.1 3.1E-05 6.7E-10 80.5 11.7 42 78-121 4-45 (366)
94 COG0746 MobA Molybdopterin-gua 98.0 9.7E-06 2.1E-10 76.7 6.9 106 78-237 3-109 (192)
95 COG1210 GalU UDP-glucose pyrop 97.9 0.0012 2.5E-08 65.1 18.0 207 82-352 7-250 (291)
96 PRK14490 putative bifunctional 97.8 8.4E-05 1.8E-09 77.3 10.0 40 79-121 174-213 (369)
97 TIGR03584 PseF pseudaminic aci 97.8 0.0015 3.3E-08 63.1 17.8 215 82-371 2-219 (222)
98 COG4750 LicC CTP:phosphocholin 97.7 5.4E-05 1.2E-09 70.5 5.1 61 81-149 2-65 (231)
99 cd02518 GT2_SpsF SpsF is a gly 97.7 0.00048 1E-08 66.5 11.7 59 82-148 2-61 (233)
100 COG1211 IspD 4-diphosphocytidy 97.6 8.2E-05 1.8E-09 72.1 5.5 64 78-147 3-67 (230)
101 PRK00317 mobA molybdopterin-gu 97.6 5.4E-05 1.2E-09 71.0 4.1 39 79-119 3-41 (193)
102 COG2068 Uncharacterized MobA-r 97.5 0.00043 9.2E-09 65.4 9.1 61 78-146 4-64 (199)
103 PRK14500 putative bifunctional 97.3 0.00021 4.6E-09 73.6 4.3 40 79-121 160-199 (346)
104 KOG1461 Translation initiation 96.5 0.39 8.5E-06 52.4 20.9 65 78-149 23-90 (673)
105 COG1207 GlmU N-acetylglucosami 96.2 0.0057 1.2E-07 63.7 4.6 54 416-469 257-312 (460)
106 cd03353 LbH_GlmU_C N-acetyl-gl 96.0 0.012 2.5E-07 55.3 5.4 47 420-466 26-73 (193)
107 COG1212 KdsB CMP-2-keto-3-deox 95.8 0.67 1.4E-05 44.8 16.5 234 79-373 3-243 (247)
108 cd05636 LbH_G1P_TT_C_like Puta 95.1 0.033 7.1E-07 50.9 5.0 45 422-466 48-93 (163)
109 cd05824 LbH_M1P_guanylylT_C Ma 94.7 0.035 7.5E-07 44.4 3.7 46 421-466 11-57 (80)
110 cd04650 LbH_FBP Ferripyochelin 94.2 0.1 2.2E-06 47.4 5.9 49 420-468 29-86 (154)
111 cd03356 LbH_G1P_AT_C_like Left 93.9 0.069 1.5E-06 42.3 3.7 15 450-464 40-54 (79)
112 PLN02472 uncharacterized prote 93.8 0.088 1.9E-06 51.8 5.0 16 428-443 127-142 (246)
113 cd05636 LbH_G1P_TT_C_like Puta 93.4 0.12 2.6E-06 47.1 4.9 49 420-468 28-78 (163)
114 TIGR02287 PaaY phenylacetic ac 93.3 0.14 3E-06 48.5 5.3 48 420-467 37-93 (192)
115 cd03359 LbH_Dynactin_5 Dynacti 93.2 0.16 3.4E-06 46.5 5.3 15 429-443 44-58 (161)
116 cd04645 LbH_gamma_CA_like Gamm 93.1 0.17 3.8E-06 45.6 5.4 47 420-466 28-83 (153)
117 PRK13627 carnitine operon prot 93.0 0.12 2.5E-06 49.2 4.2 49 420-468 39-96 (196)
118 TIGR02287 PaaY phenylacetic ac 92.9 0.14 3.1E-06 48.4 4.7 39 420-458 19-62 (192)
119 cd04652 LbH_eIF2B_gamma_C eIF- 92.7 0.14 3E-06 41.0 3.6 48 421-469 28-76 (81)
120 cd04745 LbH_paaY_like paaY-lik 92.6 0.16 3.4E-06 46.1 4.4 48 420-467 29-85 (155)
121 PLN02296 carbonate dehydratase 92.4 0.19 4E-06 50.2 4.9 19 447-465 123-141 (269)
122 TIGR01853 lipid_A_lpxD UDP-3-O 92.3 0.16 3.4E-06 52.1 4.4 35 424-458 136-172 (324)
123 cd03351 LbH_UDP-GlcNAc_AT UDP- 92.3 0.12 2.7E-06 50.8 3.5 41 420-460 40-94 (254)
124 PRK14358 glmU bifunctional N-a 92.2 0.13 2.9E-06 55.4 4.0 54 416-469 259-314 (481)
125 cd05787 LbH_eIF2B_epsilon eIF- 92.2 0.17 3.7E-06 39.7 3.6 39 429-467 35-75 (79)
126 cd04645 LbH_gamma_CA_like Gamm 92.0 0.28 6.2E-06 44.2 5.2 41 420-460 10-55 (153)
127 cd04745 LbH_paaY_like paaY-lik 91.9 0.26 5.7E-06 44.6 4.9 40 427-466 61-102 (155)
128 PF02348 CTP_transf_3: Cytidyl 91.8 11 0.00025 35.3 16.8 172 92-308 7-192 (217)
129 PF00132 Hexapep: Bacterial tr 91.6 0.14 3.1E-06 34.3 2.2 10 450-459 26-35 (36)
130 COG1044 LpxD UDP-3-O-[3-hydrox 91.5 0.23 5E-06 50.6 4.5 23 421-443 123-145 (338)
131 cd00208 LbetaH Left-handed par 91.5 0.28 6E-06 38.0 4.0 24 421-444 12-35 (78)
132 cd04652 LbH_eIF2B_gamma_C eIF- 91.4 0.23 4.9E-06 39.7 3.5 46 422-468 12-58 (81)
133 cd04650 LbH_FBP Ferripyochelin 91.4 0.35 7.6E-06 43.9 5.2 41 420-460 11-56 (154)
134 PRK14359 glmU bifunctional N-a 91.4 0.21 4.5E-06 52.6 4.3 63 391-465 269-336 (430)
135 cd04646 LbH_Dynactin_6 Dynacti 91.4 0.4 8.7E-06 44.0 5.6 17 427-443 38-54 (164)
136 PRK05289 UDP-N-acetylglucosami 91.1 0.23 4.9E-06 49.3 3.9 41 420-460 43-97 (262)
137 cd00710 LbH_gamma_CA Gamma car 91.1 0.4 8.6E-06 44.1 5.3 47 420-466 75-122 (167)
138 COG4284 UDP-glucose pyrophosph 90.8 0.13 2.9E-06 54.4 2.1 77 287-364 317-408 (472)
139 cd05635 LbH_unknown Uncharacte 90.8 0.35 7.5E-06 40.8 4.2 47 420-468 40-87 (101)
140 TIGR01852 lipid_A_lpxA acyl-[a 90.6 0.28 6E-06 48.3 4.0 40 420-459 39-92 (254)
141 PRK14352 glmU bifunctional N-a 90.6 0.31 6.6E-06 52.5 4.7 53 416-468 260-314 (482)
142 cd04647 LbH_MAT_like Maltose O 90.6 0.56 1.2E-05 39.1 5.3 16 427-442 58-73 (109)
143 PRK14356 glmU bifunctional N-a 90.3 0.27 5.9E-06 52.3 3.9 40 428-467 305-346 (456)
144 PLN02296 carbonate dehydratase 90.2 0.36 7.9E-06 48.1 4.5 22 422-443 65-86 (269)
145 cd04651 LbH_G1P_AT_C Glucose-1 90.2 0.46 1E-05 40.1 4.5 42 427-468 28-70 (104)
146 COG1861 SpsF Spore coat polysa 90.0 1 2.2E-05 43.5 7.0 61 79-149 3-66 (241)
147 TIGR01852 lipid_A_lpxA acyl-[a 90.0 0.48 1E-05 46.6 5.1 17 427-443 76-92 (254)
148 PRK14355 glmU bifunctional N-a 90.0 0.34 7.3E-06 51.8 4.4 50 420-469 261-312 (459)
149 KOG4042 Dynactin subunit p27/W 90.0 0.29 6.2E-06 44.2 3.1 51 409-460 8-58 (190)
150 PLN02472 uncharacterized prote 89.8 0.43 9.3E-06 47.0 4.5 49 421-469 89-152 (246)
151 COG1208 GCD1 Nucleoside-diphos 89.7 0.27 5.8E-06 51.0 3.2 48 422-469 256-305 (358)
152 cd03351 LbH_UDP-GlcNAc_AT UDP- 89.7 0.62 1.3E-05 45.8 5.6 41 427-467 77-127 (254)
153 PRK14353 glmU bifunctional N-a 89.6 0.29 6.2E-06 51.9 3.4 39 428-466 304-344 (446)
154 COG0663 PaaY Carbonic anhydras 89.5 0.71 1.5E-05 43.0 5.5 38 420-458 22-59 (176)
155 cd04651 LbH_G1P_AT_C Glucose-1 89.3 0.32 7E-06 41.1 2.8 33 429-461 47-80 (104)
156 PLN02694 serine O-acetyltransf 89.2 0.52 1.1E-05 47.5 4.6 30 429-458 214-245 (294)
157 TIGR01173 glmU UDP-N-acetylglu 89.1 0.41 8.9E-06 50.6 4.2 50 420-469 254-305 (451)
158 PRK11132 cysE serine acetyltra 88.8 0.6 1.3E-05 46.7 4.8 22 422-443 162-183 (273)
159 KOG1461 Translation initiation 88.7 0.38 8.3E-06 52.5 3.5 38 420-458 361-399 (673)
160 TIGR01172 cysE serine O-acetyl 88.6 0.6 1.3E-05 42.8 4.4 21 423-443 83-103 (162)
161 PLN02357 serine acetyltransfer 88.4 0.62 1.3E-05 48.2 4.7 33 428-460 279-313 (360)
162 cd03358 LbH_WxcM_N_like WcxM-l 88.3 0.49 1.1E-05 40.3 3.4 24 420-443 27-50 (119)
163 TIGR01208 rmlA_long glucose-1- 88.3 0.69 1.5E-05 47.5 5.1 41 426-466 303-348 (353)
164 cd03358 LbH_WxcM_N_like WcxM-l 88.1 0.95 2.1E-05 38.5 5.1 11 430-440 70-80 (119)
165 PRK12461 UDP-N-acetylglucosami 88.0 0.55 1.2E-05 46.4 3.9 24 420-443 40-63 (255)
166 PF07959 Fucokinase: L-fucokin 87.8 5.3 0.00011 42.4 11.5 19 292-310 141-159 (414)
167 TIGR03308 phn_thr-fam phosphon 87.8 0.65 1.4E-05 44.4 4.1 48 420-468 13-61 (204)
168 cd05635 LbH_unknown Uncharacte 87.7 1.1 2.3E-05 37.8 5.0 23 421-443 23-45 (101)
169 PRK14354 glmU bifunctional N-a 87.6 0.59 1.3E-05 49.7 4.2 48 420-467 276-341 (458)
170 PRK05289 UDP-N-acetylglucosami 87.5 0.75 1.6E-05 45.6 4.5 40 427-466 80-129 (262)
171 PRK00892 lpxD UDP-3-O-[3-hydro 87.4 0.66 1.4E-05 47.8 4.2 40 420-459 141-182 (343)
172 cd03356 LbH_G1P_AT_C_like Left 86.5 0.51 1.1E-05 37.2 2.3 41 428-468 34-76 (79)
173 PF14602 Hexapep_2: Hexapeptid 86.4 0.36 7.9E-06 32.5 1.1 31 428-458 2-32 (34)
174 TIGR03532 DapD_Ac 2,3,4,5-tetr 85.8 0.9 2E-05 44.3 4.0 11 297-307 48-58 (231)
175 TIGR03532 DapD_Ac 2,3,4,5-tetr 85.8 0.63 1.4E-05 45.4 2.9 36 424-459 113-150 (231)
176 cd05787 LbH_eIF2B_epsilon eIF- 85.6 0.57 1.2E-05 36.7 2.1 48 420-468 10-58 (79)
177 cd04646 LbH_Dynactin_6 Dynacti 85.5 1.3 2.8E-05 40.6 4.8 21 423-443 13-33 (164)
178 TIGR01853 lipid_A_lpxD UDP-3-O 84.7 0.96 2.1E-05 46.3 3.8 49 420-468 114-165 (324)
179 cd05824 LbH_M1P_guanylylT_C Ma 84.2 2 4.3E-05 34.1 4.7 47 421-468 29-77 (80)
180 PRK09451 glmU bifunctional N-a 84.1 1.8 3.9E-05 46.1 5.8 8 302-309 200-207 (456)
181 COG1044 LpxD UDP-3-O-[3-hydrox 84.1 1.2 2.5E-05 45.7 4.0 41 420-460 140-182 (338)
182 PRK11830 dapD 2,3,4,5-tetrahyd 83.8 6.9 0.00015 39.2 9.3 24 420-443 102-125 (272)
183 KOG1462 Translation initiation 83.6 1.5 3.2E-05 45.6 4.5 47 421-468 363-410 (433)
184 PRK00892 lpxD UDP-3-O-[3-hydro 83.5 1.4 3E-05 45.4 4.4 18 426-443 202-219 (343)
185 PRK09527 lacA galactoside O-ac 83.4 3 6.5E-05 39.9 6.4 32 428-459 132-165 (203)
186 PRK14360 glmU bifunctional N-a 83.4 1.3 2.7E-05 47.1 4.2 41 429-469 299-340 (450)
187 cd00710 LbH_gamma_CA Gamma car 83.3 2.5 5.5E-05 38.7 5.7 47 420-466 31-88 (167)
188 PLN02739 serine acetyltransfer 83.1 1.2 2.5E-05 46.0 3.5 31 428-458 258-290 (355)
189 PRK00844 glgC glucose-1-phosph 82.9 1.3 2.8E-05 46.7 4.0 33 428-460 349-382 (407)
190 PRK10191 putative acyl transfe 82.4 1.9 4.2E-05 39.0 4.4 33 429-461 94-128 (146)
191 cd03353 LbH_GlmU_C N-acetyl-gl 82.3 2.4 5.1E-05 39.6 5.1 9 431-439 71-79 (193)
192 cd03350 LbH_THP_succinylT 2,3, 81.0 1.4 3.1E-05 39.0 3.0 17 426-442 48-64 (139)
193 cd03357 LbH_MAT_GAT Maltose O- 80.9 2.9 6.4E-05 38.4 5.1 36 425-460 116-153 (169)
194 TIGR03570 NeuD_NnaD sugar O-ac 80.8 2.1 4.5E-05 39.5 4.2 41 420-460 146-188 (201)
195 cd03354 LbH_SAT Serine acetylt 80.4 2.9 6.4E-05 34.6 4.6 31 429-459 56-88 (101)
196 COG1043 LpxA Acyl-[acyl carrie 80.1 1.8 3.8E-05 42.3 3.4 37 422-458 28-66 (260)
197 cd03352 LbH_LpxD UDP-3-O-acyl- 80.0 1.8 3.9E-05 40.7 3.5 21 422-442 50-70 (205)
198 cd03350 LbH_THP_succinylT 2,3, 79.6 1.8 3.9E-05 38.4 3.2 38 422-459 26-65 (139)
199 cd03352 LbH_LpxD UDP-3-O-acyl- 79.4 1.5 3.2E-05 41.3 2.7 39 420-458 30-70 (205)
200 TIGR02092 glgD glucose-1-phosp 79.3 2.5 5.5E-05 43.6 4.6 33 430-462 324-357 (369)
201 PRK11132 cysE serine acetyltra 79.2 2.4 5.2E-05 42.4 4.2 32 428-459 194-227 (273)
202 PRK09677 putative lipopolysacc 79.1 4.5 9.7E-05 38.1 5.9 33 427-459 130-164 (192)
203 PRK14357 glmU bifunctional N-a 78.8 2.5 5.4E-05 44.8 4.5 21 130-150 91-114 (448)
204 PRK00725 glgC glucose-1-phosph 78.8 1.4 3.1E-05 46.7 2.6 35 427-461 360-395 (425)
205 COG2171 DapD Tetrahydrodipicol 78.6 2.4 5.2E-05 42.0 3.9 48 420-467 149-207 (271)
206 TIGR00965 dapD 2,3,4,5-tetrahy 78.5 1.7 3.6E-05 43.3 2.8 22 421-442 173-194 (269)
207 TIGR02091 glgC glucose-1-phosp 78.2 2.4 5.3E-05 43.5 4.1 31 428-458 328-359 (361)
208 cd05825 LbH_wcaF_like wcaF-lik 77.0 5.8 0.00012 33.4 5.4 38 423-460 52-91 (107)
209 cd00208 LbetaH Left-handed par 76.9 2.6 5.7E-05 32.4 3.0 19 421-439 18-36 (78)
210 cd03357 LbH_MAT_GAT Maltose O- 76.8 3.6 7.9E-05 37.7 4.4 7 430-436 85-91 (169)
211 PRK05293 glgC glucose-1-phosph 76.3 3 6.4E-05 43.3 4.1 43 427-469 325-373 (380)
212 PLN02357 serine acetyltransfer 76.0 3.3 7.2E-05 42.9 4.3 21 422-442 247-267 (360)
213 PRK10502 putative acyl transfe 75.7 6.5 0.00014 36.6 5.9 16 427-442 124-139 (182)
214 PF00132 Hexapep: Bacterial tr 74.2 3.6 7.8E-05 27.3 2.8 23 420-442 12-34 (36)
215 PRK12461 UDP-N-acetylglucosami 73.9 5.5 0.00012 39.4 5.1 17 427-443 77-93 (255)
216 PRK10092 maltose O-acetyltrans 73.9 13 0.00028 34.8 7.4 37 423-459 125-163 (183)
217 cd04647 LbH_MAT_like Maltose O 72.8 5.2 0.00011 33.1 4.1 48 420-467 12-77 (109)
218 PLN02694 serine O-acetyltransf 72.4 4.7 0.0001 40.7 4.2 48 421-468 180-238 (294)
219 PLN02241 glucose-1-phosphate a 70.8 4.2 9.1E-05 43.3 3.7 19 450-468 374-392 (436)
220 PRK10191 putative acyl transfe 70.3 6.1 0.00013 35.7 4.1 23 421-443 61-83 (146)
221 PRK10092 maltose O-acetyltrans 69.0 4 8.8E-05 38.3 2.8 7 452-458 166-172 (183)
222 COG0663 PaaY Carbonic anhydras 68.6 8.8 0.00019 35.8 4.8 32 427-458 72-104 (176)
223 PLN02739 serine acetyltransfer 67.6 5.7 0.00012 41.1 3.7 23 421-443 269-291 (355)
224 PRK13627 carnitine operon prot 66.7 12 0.00026 35.5 5.5 30 429-458 90-121 (196)
225 COG1045 CysE Serine acetyltran 66.4 6.8 0.00015 37.1 3.6 8 450-457 144-151 (194)
226 cd05825 LbH_wcaF_like wcaF-lik 66.3 5.7 0.00012 33.5 2.9 8 452-459 93-100 (107)
227 PRK09527 lacA galactoside O-ac 65.7 10 0.00022 36.3 4.8 15 428-442 96-110 (203)
228 TIGR01172 cysE serine O-acetyl 65.2 7.6 0.00016 35.5 3.8 30 429-458 115-146 (162)
229 TIGR03535 DapD_actino 2,3,4,5- 64.7 6.1 0.00013 40.0 3.2 21 422-442 194-214 (319)
230 PRK02862 glgC glucose-1-phosph 64.0 6.9 0.00015 41.5 3.7 42 422-465 304-346 (429)
231 COG0110 WbbJ Acetyltransferase 61.4 6.2 0.00014 36.4 2.5 34 425-458 122-157 (190)
232 TIGR00965 dapD 2,3,4,5-tetrahy 58.9 12 0.00026 37.3 4.1 8 451-458 224-231 (269)
233 cd04649 LbH_THP_succinylT_puta 58.7 9.5 0.00021 34.6 3.0 31 428-458 74-104 (147)
234 cd04649 LbH_THP_succinylT_puta 58.1 13 0.00029 33.6 3.9 18 426-443 46-63 (147)
235 PRK13412 fkp bifunctional fuco 58.0 3.9E+02 0.0084 31.8 18.9 43 420-463 348-392 (974)
236 PF00535 Glycos_transf_2: Glyc 57.4 1.2E+02 0.0026 25.7 10.3 106 102-243 4-110 (169)
237 cd03354 LbH_SAT Serine acetylt 57.2 10 0.00022 31.3 2.8 23 421-443 22-44 (101)
238 COG1043 LpxA Acyl-[acyl carrie 57.2 17 0.00036 35.7 4.6 40 420-459 44-91 (260)
239 TIGR02353 NRPS_term_dom non-ri 57.0 11 0.00023 42.9 3.8 16 427-442 645-660 (695)
240 COG1535 EntB Isochorismate hyd 55.8 36 0.00079 32.0 6.3 103 105-223 47-153 (218)
241 COG0448 GlgC ADP-glucose pyrop 55.3 15 0.00032 38.6 4.2 40 421-461 323-363 (393)
242 TIGR03308 phn_thr-fam phosphon 54.4 9.2 0.0002 36.5 2.4 14 447-460 130-143 (204)
243 KOG1460 GDP-mannose pyrophosph 54.1 14 0.0003 37.4 3.6 45 420-464 281-327 (407)
244 cd03349 LbH_XAT Xenobiotic acy 52.9 11 0.00024 33.9 2.5 32 427-458 73-106 (145)
245 PRK09677 putative lipopolysacc 51.5 12 0.00025 35.2 2.6 35 420-460 141-175 (192)
246 TIGR03536 DapD_gpp 2,3,4,5-tet 49.7 34 0.00074 35.1 5.6 30 428-457 251-280 (341)
247 TIGR03535 DapD_actino 2,3,4,5- 48.3 14 0.00031 37.5 2.7 31 428-458 226-256 (319)
248 TIGR02353 NRPS_term_dom non-ri 45.2 18 0.0004 41.0 3.3 40 421-460 154-195 (695)
249 COG1045 CysE Serine acetyltran 44.3 29 0.00063 32.9 3.9 24 420-443 130-153 (194)
250 TIGR03536 DapD_gpp 2,3,4,5-tet 44.0 26 0.00056 35.9 3.7 45 420-467 223-273 (341)
251 PF04519 Bactofilin: Polymer-f 43.2 41 0.00088 27.9 4.4 12 450-461 70-81 (101)
252 COG4801 Predicted acyltransfer 39.4 42 0.0009 32.9 4.2 41 420-464 67-107 (277)
253 cd03349 LbH_XAT Xenobiotic acy 37.9 28 0.00062 31.2 2.8 35 420-460 84-118 (145)
254 COG0378 HypB Ni2+-binding GTPa 35.5 1.1E+02 0.0024 29.2 6.3 50 205-258 87-138 (202)
255 KOG3121 Dynactin, subunit p25 32.9 42 0.00091 30.4 2.9 18 426-443 106-123 (184)
256 cd00761 Glyco_tranf_GTA_type G 32.7 2.4E+02 0.0051 23.1 7.7 43 103-149 4-46 (156)
257 COG2240 PdxK Pyridoxal/pyridox 32.5 11 0.00025 37.7 -0.8 18 188-205 211-228 (281)
258 COG0110 WbbJ Acetyltransferase 30.6 48 0.001 30.4 3.1 10 451-460 160-169 (190)
259 PRK10073 putative glycosyl tra 30.2 3.7E+02 0.0079 27.3 9.8 112 96-244 4-118 (328)
260 KOG1322 GDP-mannose pyrophosph 28.2 44 0.00095 34.4 2.5 51 419-469 274-325 (371)
261 PRK00576 molybdopterin-guanine 27.0 50 0.0011 30.1 2.5 24 97-121 3-28 (178)
262 KOG4042 Dynactin subunit p27/W 26.0 87 0.0019 28.7 3.7 37 420-460 100-136 (190)
263 PRK10063 putative glycosyl tra 25.7 6.1E+02 0.013 24.4 10.9 45 106-151 11-55 (248)
264 COG1664 CcmA Integral membrane 24.8 1.3E+02 0.0028 27.3 4.7 19 420-438 28-46 (146)
265 PF06258 Mito_fiss_Elm1: Mitoc 24.4 3.1E+02 0.0067 27.9 7.9 71 79-162 146-216 (311)
266 KOG3121 Dynactin, subunit p25 22.0 70 0.0015 29.0 2.3 41 420-460 106-148 (184)
267 PF04519 Bactofilin: Polymer-f 21.9 1.2E+02 0.0026 25.0 3.7 38 424-461 60-98 (101)
268 KOG4750 Serine O-acetyltransfe 21.6 63 0.0014 31.5 2.1 22 420-441 211-232 (269)
269 COG4801 Predicted acyltransfer 21.3 1.6E+02 0.0034 29.0 4.7 48 420-468 44-94 (277)
270 COG1664 CcmA Integral membrane 21.1 1.5E+02 0.0032 26.9 4.3 45 419-463 72-121 (146)
271 KOG4750 Serine O-acetyltransfe 20.4 1.2E+02 0.0026 29.7 3.6 32 423-458 202-233 (269)
No 1
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-113 Score=853.08 Aligned_cols=461 Identities=62% Similarity=1.009 Sum_probs=443.3
Q ss_pred HHHHHHHHHHhh-hhcccChhHHHHHHHHHHHHhhcCCCCccCCccccCCCCccccCCCCCCCCCChhhHHHhccceeEE
Q 012172 5 AEKLTQLKSAVA-GLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLAPVPEDPAETKKLLDKLVVL 83 (469)
Q Consensus 5 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~l~k~avv 83 (469)
+++|+++..+.+ .-+++++.+++.|.++|+||+.+....++|+.|+|++++.+++|++++.. +.+.++|+|+||+
T Consensus 32 k~~l~~l~~~~~~~~k~~~~~e~~~F~~Lf~RyL~~~~~~~~wdkI~~p~~d~vv~y~~i~~~----~~~~~~L~KLavl 107 (498)
T KOG2638|consen 32 KNELDKLLSTSEPEDKNHFKTELSGFFNLFSRYLREKAPTIDWDKIRPPPEDAVVPYDDIKNV----ELSKSLLNKLAVL 107 (498)
T ss_pred HHHHHhccccCchhhhhcchhhHHHHHHHHHHHHhccCCccchhhccCCChhhccccccccch----hhHHHhhhheEEE
Confidence 556666666653 33457789999999999999999989999999999999999999999742 6788999999999
Q ss_pred EEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEEEEec
Q 012172 84 KLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQS 163 (469)
Q Consensus 84 iLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~f~Q~ 163 (469)
+|+||+||.|||.+||++++|+.|.||||+.++|++.|+++|++++|+++|||++|+++|++++++|.+++.+|++|.|+
T Consensus 108 KLNGGlGttmGc~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~~kv~i~TF~QS 187 (498)
T KOG2638|consen 108 KLNGGLGTTMGCKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAGSKVDIKTFNQS 187 (498)
T ss_pred EecCCcCCccccCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcCCceeEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred CcceecCCCCcccCC-CCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHHHHcCCc
Q 012172 164 QYPRLCADDFVPLPC-KGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNE 242 (469)
Q Consensus 164 ~~P~l~~~~~~~~~~-~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~~~~~~~ 242 (469)
++|+++.++++|++. .+++...+||||||||+|.+|+.||+|++|+++|+||+||+|+|||++++|+.+|.++++++.+
T Consensus 188 ~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL~ILn~~i~~~~e 267 (498)
T KOG2638|consen 188 KYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDLNILNHVINNNIE 267 (498)
T ss_pred cCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeHHHHHHHhcCCCc
Confidence 999999999999997 5666789999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeeeccCCCcceEEEEeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccccccCCC
Q 012172 243 YCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPK 322 (469)
Q Consensus 243 ~~~~v~~k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~~~n~K 322 (469)
+.|+|++||.+|.+||+++.++|+++++|++|+|++++++|.+.++|++|||||+|+++.++++++++..+.|++|.|+|
T Consensus 268 y~MEvTdKT~aDvKgGtLi~y~G~lrlLEiaQVP~ehv~eFkS~kkFkifNTNNlWinLkavKrlve~~~l~meIi~N~k 347 (498)
T KOG2638|consen 268 YLMEVTDKTRADVKGGTLIQYEGKLRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWINLKAVKKLVEENALNMEIIVNPK 347 (498)
T ss_pred eEEEecccchhhcccceEEeecCEEEEEEeccCChhHhhhhccceeEEEeccCCeEEehHHHHHHhhcCcccceeecChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC-CcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHHhhcCceeecCCccCCCCCeEEECCCcc
Q 012172 323 EVD-GIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFK 401 (469)
Q Consensus 323 ~~~-g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l~~g~l~~~~~r~~~~~p~V~l~~~~~ 401 (469)
+++ +..++||||++|+||++|+++.++.|+|+||+|||+++||++++|++|.+++|.+.++|.|+.+..|.|.|+++|+
T Consensus 348 ti~~~~~viQleTa~GaaIk~F~na~gv~VpRsRFlPVKt~sDLlLv~S~Ly~ld~Gsl~l~~~r~~~t~P~vkLg~~F~ 427 (498)
T KOG2638|consen 348 TIDRGIEVIQLETAAGAAIKFFDNAIGVNVPRSRFLPVKTCSDLLLVMSNLYDLDNGSLTLSPSRFGPTPPLVKLGSEFK 427 (498)
T ss_pred hccCCceEEEEhhhhhHHHHhCCCceeeeccccccccccccccceeeecceeeccCCeEEechhhcCCCCCeeecchhhh
Confidence 998 7889999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred cccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEEecCCCceeeCCCCeeecceecCCCCC
Q 012172 402 KVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 402 ~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
++++|..||+++|+|+++++|+|.|||+||+||+++|+|+|.|++|++++||+||||||++|.+||||
T Consensus 428 kv~~f~~rfp~iP~ileLdhLtVsGdV~FGknV~LkGtViIia~~~~~i~IP~gsVLEn~~v~gn~~i 495 (498)
T KOG2638|consen 428 KVEDFLGRFPGIPDILELDHLTVSGDVWFGKNVSLKGTVIIIANEGDRIDIPDGSVLENKIVSGNLRI 495 (498)
T ss_pred HHHHHHhcCCCCCccceeceEEEeccEEeccceEEeeEEEEEecCCCeeecCCCCeeecceEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999997
No 2
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=100.00 E-value=5.5e-112 Score=881.78 Aligned_cols=467 Identities=90% Similarity=1.347 Sum_probs=440.8
Q ss_pred chHHHHHHHHHHhhhhcccChhHHHHHHHHHHHHhhcCCCCccCCccccCCCCccccCCCCCCCCCChhhHHHhccceeE
Q 012172 3 TDAEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLAPVPEDPAETKKLLDKLVV 82 (469)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~l~k~av 82 (469)
+...++.++...+..+...++.+++.|.++|++|++++.+.|+|+.|+|++++.+++|++++..+.......++|+|+||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~L~k~av 82 (469)
T PLN02474 3 TADEKLPQLRSAVAGLDQISENEKSGFISLVSRYLSGEAQHIEWSKIQTPTDEVVVPYDKLAPVPEDPEETKKLLDKLVV 82 (469)
T ss_pred chhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhCCCCeecHHHccCCchhhCcChhhccccccchhHHHHHHhcEEE
Confidence 33444555666566667777889999999999999999889999999999999999999997544344567889999999
Q ss_pred EEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEEEEe
Q 012172 83 LKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQ 162 (469)
Q Consensus 83 viLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~f~Q 162 (469)
|+||||||||||+++||++++|++|+||||++++|+++++++||++|||+||||+.||++|++||++|...+.+|++|.|
T Consensus 83 lkLnGGlGTrmG~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~~~~~~i~~F~Q 162 (469)
T PLN02474 83 LKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYTNSNIEIHTFNQ 162 (469)
T ss_pred EEecCCcccccCCCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcCCCccceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876778999999
Q ss_pred cCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHHHHcCCc
Q 012172 163 SQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNE 242 (469)
Q Consensus 163 ~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~~~~~~~ 242 (469)
+++||++.+|+++++++....+.+|+|+||||+|.+|+.||+|++|+++|++|+||+|+|||++++||.||||++.++++
T Consensus 163 ~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~~lg~~~~~~~e 242 (469)
T PLN02474 163 SQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLKILNHLIQNKNE 242 (469)
T ss_pred CceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHHHHHHHHhcCCc
Confidence 99999999999999876545678899999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeeeccCCCcceEEEEeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccccccCCC
Q 012172 243 YCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPK 322 (469)
Q Consensus 243 ~~~~v~~k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~~~n~K 322 (469)
++|+|++|+.+++++|++|+++|+++++||+|+|++++++|++..+|++||||||||++++|+++++...++++.|.|+|
T Consensus 243 ~~~ev~~Kt~~d~kgG~l~~~dgk~~lvEysqvp~e~~~~f~~~~kf~~fNtnn~w~~L~~l~~~~~~~~l~~~~I~n~k 322 (469)
T PLN02474 243 YCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPK 322 (469)
T ss_pred eEEEEeecCCCCCCccEEEEECCEEEEEEEecCCHHHHHhhcccccceeeeeeeEEEEHHHHHHHhhcCCCCceeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987778999999999
Q ss_pred cCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHHhhcCceeecCCccCCCCCeEEECCCccc
Q 012172 323 EVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKK 402 (469)
Q Consensus 323 ~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l~~g~l~~~~~r~~~~~p~V~l~~~~~~ 402 (469)
+++|.+++|||||+||+|++|+++.+++|+|+||+||||++||+++|||+|.+.++|+..+|.|..+..|.|+|+|.|++
T Consensus 323 ~~~g~kv~q~Et~ig~ai~~f~~~~~v~VpR~rF~PVK~~~dll~~rsdly~l~~~~l~~~~~~~~~~~p~IeL~~~f~~ 402 (469)
T PLN02474 323 EVDGVKVLQLETAAGAAIRFFDNAIGINVPRSRFLPVKATSDLLLVQSDLYTLVDGFVIRNKARTNPSNPSIELGPEFKK 402 (469)
T ss_pred CCCCeeEEEeHHHHHHHHHhCCCceEEEEchhhccCCCCCCCHHHHHHHHHHhccCeEEecCcccCCCCCcEEECccccc
Confidence 99888999999999999999999999999999999999999999999999999999999999987778899999999999
Q ss_pred ccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEEecCCCceeeCCCCeeecceecCCCCC
Q 012172 403 VGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 403 ~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
+++|++||+++|||++|++|+|+|||+||+||+++|+|+|.|++|++++||+|++||+++|.+++|+
T Consensus 403 v~~f~~rf~~iPsl~~~d~LtV~Gdv~fG~~v~l~G~v~i~~~~~~~~~ip~g~~l~~~~~~~~~~~ 469 (469)
T PLN02474 403 VANFLSRFKSIPSIVELDSLKVSGDVWFGSGIVLKGKVTITAKSGVKLEIPDGAVLENKDINGPEDL 469 (469)
T ss_pred HHhHHHhcCCCCCcccCCeEEEeeeeEECCCcEEEEEEEEEcCCCCeeecCCCcEecceeecccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999985
No 3
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=100.00 E-value=1.3e-98 Score=779.64 Aligned_cols=413 Identities=51% Similarity=0.850 Sum_probs=367.3
Q ss_pred HHHHHHHHHHHHhhc-CCCCccCCccccCCCCccccCCCCCCCCCChhhHHHhccceeEEEEcCCCCCcCCCCCCccccc
Q 012172 25 EKNGFINLVARYLSG-EAQHVEWSKIQTPTDKIVVPCDSLAPVPEDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIE 103 (469)
Q Consensus 25 ~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~l~k~avviLAGG~GTRmg~~~PK~l~~ 103 (469)
+++.|.++|++|+++ .++.++|+.|+|++++++.+|++++...-....+..+++|+|||+||||||||||+++||++++
T Consensus 1 e~~~f~~l~~~yl~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~kvavl~LaGGlGTrlG~~~pK~~~~ 80 (420)
T PF01704_consen 1 ELDSFFSLFRRYLSESKSHQIDWDKIMPPPPEEVVDYESLKEYEWDEGLEAIALGKVAVLKLAGGLGTRLGCSGPKGLIP 80 (420)
T ss_dssp HHHHHHHHHHHHHHCCCCCS--GGGEEE-GTGCEEEHHHHHHSCHHHHHHHHHTTCEEEEEEEESBSGCCTESSBGGGSE
T ss_pred ChHHHHHHHHHHHHhcccCCcccccCCCCChhhcCChhHhcccccccchhHHhhCCEEEEEEcCcccCccCCCCCCccee
Confidence 578999999999998 5679999999999999888998886311012356777899999999999999999999999999
Q ss_pred cCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEEEEecCcceecCCCCcccCCCC-CC
Q 012172 104 VRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKG-KT 182 (469)
Q Consensus 104 v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~f~Q~~~P~l~~~~~~~~~~~~-~~ 182 (469)
|+.|+||||++++|+++++++||+.|||+||||+.||++|++||++|++.+.+|.+|+|+++||++.+|++++.++. ++
T Consensus 81 v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~ 160 (420)
T PF01704_consen 81 VREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFGLDVDVFFFKQSKLPAIDADGKLPLESKPKDS 160 (420)
T ss_dssp EETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCGSSCCEEEEEE-EEEEEETTTTCBEEETTEES
T ss_pred cCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcCCCcceEEEeecCcceEeCCCccccccccccc
Confidence 99999999999999999999999999999999999999999999999986556999999999999999999999864 22
Q ss_pred -CCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHHHHcCCcceEEEeeeccCCCcceEEE
Q 012172 183 -DKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLI 261 (469)
Q Consensus 183 -~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv 261 (469)
...+|+|+||||+|.+|.+||+|++|+++|++|+||+|+|||++++||.+|||+++++++++|+|++|+.+++++|++|
T Consensus 161 ~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp~~lG~~~~~~~~~~~evv~Kt~~dek~Gvl~ 240 (420)
T PF01704_consen 161 IAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDPVFLGYMIEKNADFGMEVVPKTSPDEKGGVLC 240 (420)
T ss_dssp EEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-HHHHHHHHHTT-SEEEEEEE-CSTTTSSEEEE
T ss_pred cchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCHHHHHHHHhccchhheeeeecCCCCCceeEEE
Confidence 2457999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccccccCCCcCC----CcceehhHHHhh
Q 012172 262 SYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVD----GIKVLQLETAAG 337 (469)
Q Consensus 262 ~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~~~n~K~~~----g~~~iqle~~~~ 337 (469)
+++|+++++||+|+|++++++|++..++..|||||+||++++|+++++...+.||+|+|+|+++ +.+++|||++++
T Consensus 241 ~~~G~~~vvEysqip~~~~~~~~~~~~~~~FntnNi~~~l~~l~~~~~~~~~~Lp~h~a~Kki~~~d~~~~~~q~Et~i~ 320 (420)
T PF01704_consen 241 RYDGKLQVVEYSQIPKEHMAEFKDIKGFLLFNTNNIWFSLDFLKRLLERDELQLPIHVAKKKIPYVDNGIKVIQFETAIG 320 (420)
T ss_dssp EETTEEEEEEGGGS-HHGHHHHTSTTTSBEEEEEEEEEEHHHHHHHHHTTTCCS-EEEEEEESSEECTEEEEEEEECGGG
T ss_pred EeCCccEEEEeccCCHHHHHhhhccccceEEEeceeeEEHHHHHHHHHhccccCccEEcchhcccccCCccEEeehhhhh
Confidence 9999999999999999999999988999999999999999999999998889999999999993 678999999999
Q ss_pred hHhhhcccceeEeecCccccccCCchhHHHHHHHHHHhhcCceeecCCccCCCCCeEEECCCcccccccccccccCCccc
Q 012172 338 AAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSII 417 (469)
Q Consensus 338 d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l~~g~l~~~~~r~~~~~p~V~l~~~~~~~~~~~~~i~~~p~~~ 417 (469)
+++..|.++.+++|+|+||+||||++||+.++||+|.++.|.+.++|.|.....|.|.|++.|+++++|.+||+.+|||+
T Consensus 321 ~~i~~f~~~~~v~V~R~rF~PvKn~~dLl~~~Sd~y~~~~~~~~~~~~~~~~~~p~i~lg~~f~~v~~~~~r~~~ip~l~ 400 (420)
T PF01704_consen 321 FAIFQFDNSFAVEVPRDRFAPVKNTSDLLLVRSDLYDLDDGTLVRNPLRAFHTRPLIKLGDHFKKVDDFEKRFPSIPSLL 400 (420)
T ss_dssp GGGGGCTSEEEEEE-GGG--B-SSHHHHHHHHSTTEEEETTEEEEHCCHCSSCHHEEEECGGGSSHHHHHHHBSSS-BET
T ss_pred chHhhccCcEEEEEcHHHcCCccccCcceeeccceeccccceeeecccccCCCCCeeccCcccCchHHhhhhcCCCCCcc
Confidence 99999999999999999999999999999999999999999999999998778899999999999999999999999999
Q ss_pred ccCceEEEeeEEECCCcEEe
Q 012172 418 ELDSLKVTGDVWFGANITLK 437 (469)
Q Consensus 418 ~~~~l~v~G~v~fg~~V~i~ 437 (469)
++++|+|.|||+||+||+|+
T Consensus 401 ~~~~l~v~gdv~fg~~v~lk 420 (420)
T PF01704_consen 401 ELDSLTVSGDVTFGKNVVLK 420 (420)
T ss_dssp TEEEEEEESSEEE-TT-EEE
T ss_pred cCCcceEecceEECCCcEeC
Confidence 99999999999999999985
No 4
>PLN02830 UDP-sugar pyrophosphorylase
Probab=100.00 E-value=1.1e-88 Score=729.03 Aligned_cols=453 Identities=21% Similarity=0.241 Sum_probs=401.2
Q ss_pred HHHHHHHHHHhhhhcccChhHHHHHHHHHHHHhhcC-CCCccCCccccC-CCCccccCCCCCCCCCChhhHHHhccceeE
Q 012172 5 AEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGE-AQHVEWSKIQTP-TDKIVVPCDSLAPVPEDPAETKKLLDKLVV 82 (469)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~g~~~l~k~av 82 (469)
.++.++|++++..++..|++++..|++.+++++.++ ++.++|++|+|. +++...+|++.. ...+++.|+++|+|+||
T Consensus 53 ~~e~~~L~~qL~~ld~~y~g~l~~~~~~~~~~l~~s~~~~~~~~~i~P~vp~~~~~~~~~~~-~~~~~~~Gl~~l~kvav 131 (615)
T PLN02830 53 DDDKRRLLEQVARLDESYPGGLAAYVSNAKELLADSKEGVNPFEGWTPSVPEGEVLEYGSEE-FVELEEAGLREAGNAAF 131 (615)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccCCCchhhcccCCCccccccccchh-hhHHHHHHHHHhCcEEE
Confidence 567889999999999899999999999999999976 679999999994 666677787753 33456789999999999
Q ss_pred EEEcCCCCCcCCCCCCcccccc--CCCCchHHHHHHHHHHhhh-------hcCCcccEEEecCCCChHHHHHHHHHh--c
Q 012172 83 LKLNGGLGTTMGCTGPKSVIEV--RNGLTFLDLIVIQIENLNA-------KYGCNVPLLLMNSFNTHDDTSKIIEKY--S 151 (469)
Q Consensus 83 viLAGG~GTRmg~~~PK~l~~v--~~gks~L~~~~~~i~~l~~-------~~~~~iplviMtS~~t~e~t~~~~~~~--~ 151 (469)
|+||||||||||+++||+++|+ ++|+||||+++++|++++. .+++.|||+||||++||++|++||++| +
T Consensus 132 llLaGGlGTRLG~~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~~~~n~~F 211 (615)
T PLN02830 132 VLVAGGLGERLGYSGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLLERNDYF 211 (615)
T ss_pred EEecCCcccccCCCCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHHHHHCCcc
Confidence 9999999999999999999998 7999999999999999954 467899999999999999999999984 4
Q ss_pred C-CCCceEEEEecCcceecCC-CCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccc
Q 012172 152 K-SNVEIHTFNQSQYPRLCAD-DFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIV 228 (469)
Q Consensus 152 g-~~~~i~~f~Q~~~P~l~~~-~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~ 228 (469)
| .+++|++|+|+++||++.+ ++++++ +.++++++|+|+||||+|.+|++||+|++|+++|++|+||+|+|| |+..+
T Consensus 212 Gl~~~~v~~F~Q~~~P~~~~~~g~~~l~-~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~L~~~A 290 (615)
T PLN02830 212 GMDPDQVTLLKQEKVACLMDNDARLALD-PNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNGLVFKA 290 (615)
T ss_pred CCCccceEEEEcCcceeEecCCCccccc-CCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEeccchhhhcc
Confidence 6 5678999999999999876 555554 444589999999999999999999999999999999999999999 99999
Q ss_pred cHHHHHHHHHcCCcceEEEeeeccCCCcceEEEE---eCCe--eEEEEeccCChhhhhhc------cccccccEE--EEE
Q 012172 229 DLKILNHLIQNKNEYCMEVTPKTLADVKGGTLIS---YEGK--VQLLEIAQVPDEHVNEF------KSIEKFKIF--NTN 295 (469)
Q Consensus 229 dp~~Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~---~~g~--~~ivEy~~~~~e~~~~~------~~~~~~~~~--Nt~ 295 (469)
||.||||++.++++|+++|++| .+.++.|++|+ .||+ +++|||+++++...... .+...|++| |||
T Consensus 291 dp~flG~~~~~~~d~~~kvv~K-~~~E~vGvi~~~~~~dG~~l~~vVEYse~~~ll~~a~~p~g~l~~~~~~s~FPgNtN 369 (615)
T PLN02830 291 IPAALGVSATKGFDMNSLAVPR-KAKEAIGAIAKLTHKDGREMVINVEYNQLDPLLRATGHPDGDVNDETGYSPFPGNIN 369 (615)
T ss_pred cHHHhHHHHhcCCceEEEEEEC-CCCcccceEEEEecCCCCeeeEEEeecccCHHHHhccCCCcccccccccccCCCCce
Confidence 9999999999999999999999 67799999998 5777 57899999876532211 122458899 999
Q ss_pred eEEEeHHHHHHHHHhcccccccccCCCcCC-CcceehhHHHhhhHhhhcccceeE------ee--cCccccccCCc-h--
Q 012172 296 NLWVNLKAIKRLVEADALKMEIIPNPKEVD-GIKVLQLETAAGAAIRFFDHAIGC------NV--HRSRFLPVKAT-S-- 363 (469)
Q Consensus 296 ~~~~~l~~L~~~l~~~~~~lp~~~n~K~~~-g~~~iqle~~~~d~~~~~~~~~~v------~v--~r~eF~pVKn~-~-- 363 (469)
++|+++.+|+++++++.+.||+|+|+|+.+ ++.++|+|+++++||++|+++..+ .| +|.+|+||||+ +
T Consensus 370 ~L~v~L~a~~~~l~~~~~~lp~ivNpK~~d~~~~v~q~~trle~~mq~f~~~~~~~~~vg~~v~~~~~~f~PVKn~~s~a 449 (615)
T PLN02830 370 QLILKLGPYVKELAKTGGVIEEFVNPKYKDATKTAFKSPTRLECMMQDYPKTLPPSAKVGFTVFDNWLAYSPVKNSPADG 449 (615)
T ss_pred eeEeeHHHHHHHHHhCCCccceeccCcccCCCCceeecchHHHHHHHHHhhhcCcccccCceecCchheeccccCChHHh
Confidence 999999999999998889999999999998 678999999999999999987666 77 66799999999 7
Q ss_pred ------------------------hHHHHHHHHHHhhcCceeecCCccCCCCCeEEECCCcc-ccccccccc-ccCCccc
Q 012172 364 ------------------------DLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFK-KVGNFLSRF-KSIPSII 417 (469)
Q Consensus 364 ------------------------dL~~~~~~~~~l~~g~l~~~~~r~~~~~p~V~l~~~~~-~~~~~~~~i-~~~p~~~ 417 (469)
+|++.++++|.+..+.....+.+.....|.|.|+|.|+ ++++|++|| +++|+|+
T Consensus 450 ~~k~~~~~~~~~~~s~e~d~y~~~~llL~~s~~~~~~~~~~~~~~~~~~~~~P~I~L~p~f~~~~~~~~~k~~~~~~si~ 529 (615)
T PLN02830 450 AAKVPEGNPTHSATSGEMAIYGANCLILRKAGADVEEPVEDVVFNGIEVEVGPRIVLKPAFALTFSELKKKVAPGSVKIS 529 (615)
T ss_pred hhhcccCCCccCcchhhHHHHHHHHHHHHhcCCccccCccccccCCcccCCCCeEEECchhhhHHHHHHHHhcCCCCccc
Confidence 67777778887777766555555557889999999999 999999999 9999999
Q ss_pred ccCceEEEeeEEECCCcEEeeeEEEEecCCCceeeCCCCeeecc
Q 012172 418 ELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENK 461 (469)
Q Consensus 418 ~~~~l~v~G~v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~le~~ 461 (469)
++++|+|+|+++||+||+|+|+++|.+++|++++| ++++++|+
T Consensus 530 ~~s~L~v~G~~~~~~~v~LdG~viI~a~~~~~~~i-~g~~v~N~ 572 (615)
T PLN02830 530 QRSTLVLEGADIVIENLSLDGALVVRAVPGAEVTV-GGLRVKNK 572 (615)
T ss_pred CCCeEEEEeeeEEecCeEEEEEEEEEcCCCCeEEe-cCeEEecC
Confidence 99999999999999999999999999999999999 89999885
No 5
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=100.00 E-value=3e-82 Score=629.94 Aligned_cols=299 Identities=71% Similarity=1.136 Sum_probs=287.3
Q ss_pred ccceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCc
Q 012172 77 LDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVE 156 (469)
Q Consensus 77 l~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~ 156 (469)
|+|+|||+||||||||||+++||+|++|++|+||||++++|+++++++||+.|||+||||+.||++|++||++|.+.+.+
T Consensus 1 l~kvavl~LaGG~GTRLG~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~~~~~ 80 (300)
T cd00897 1 LNKLVVLKLNGGLGTSMGCTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAGVNVD 80 (300)
T ss_pred CCcEEEEEecCCcccccCCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCCCccC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999998776678
Q ss_pred eEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHH
Q 012172 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHL 236 (469)
Q Consensus 157 i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~ 236 (469)
|.+|+|+++||++.+|+++++...++++++|+|+||||+|.+|++||+|++|+++|++|++|+|+|||++++||.||||+
T Consensus 81 v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~lg~~ 160 (300)
T cd00897 81 IHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRILNHM 160 (300)
T ss_pred eEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHHHHHH
Confidence 99999999999999999999844456899999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEEeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKME 316 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp 316 (469)
++++++++|||++|+.+++++|++|+++|++++|||+|+|++++++|++..+|++|||||+||++++|+++++...+.||
T Consensus 161 ~~~~~~~~~evv~Kt~~dek~G~l~~~~g~~~vvEyse~p~e~~~~~~~~~~~~~~nt~n~~~~l~~L~~~~~~~~~~lp 240 (300)
T cd00897 161 VDNKAEYIMEVTDKTRADVKGGTLIQYEGKLRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWVNLKAVKRVVEENALDLE 240 (300)
T ss_pred HhcCCceEEEEeecCCCCCcccEEEEECCEEEEEEeccCCHHHHHhhcCcccceEEEEeEEEEEHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999987778899
Q ss_pred cccCCCcCC-CcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHHh
Q 012172 317 IIPNPKEVD-GIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTL 375 (469)
Q Consensus 317 ~~~n~K~~~-g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l 375 (469)
+|+|.|+++ +++++|||+|+||+|++|+++.+++|+|+||+||||++||+++|||+|.+
T Consensus 241 ~h~~~K~v~p~~~~~qlE~~i~da~~~~~~~~~~eV~R~rF~PvKn~~dll~~~sd~y~~ 300 (300)
T cd00897 241 IIVNPKTVDGGLNVIQLETAVGAAIKNFDNALGVNVPRSRFLPVKTTSDLLLVRSDLYSL 300 (300)
T ss_pred eeecccccCCCCCEEEeHhHhhhHHHhCCCcEEEEEChhhcCCCCChHHHHhhhhccccC
Confidence 999999996 57899999999999999999999999999999999999999999999853
No 6
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=100.00 E-value=5e-76 Score=615.69 Aligned_cols=385 Identities=19% Similarity=0.208 Sum_probs=332.0
Q ss_pred HHHHHHHHHhhhhcccChhHHHHHHHHHHHHhhcCCCCccCCccccCCCCccccCCCCCC--CCCChhhHHHhc--ccee
Q 012172 6 EKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLAP--VPEDPAETKKLL--DKLV 81 (469)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--~~~~~~~g~~~l--~k~a 81 (469)
++.++|.++|..+ +...+.+++++.+..+ .++|+.++|+++....++++... ...+++.|+++| +++|
T Consensus 47 ~e~~~L~~qL~~i------D~~~l~~~~~~~~~~~--~~~~~~i~P~p~~~~~~~~~~~~~~~~~~~~~Gl~~I~~gkva 118 (493)
T PLN02435 47 EERDLLVRDIESL------DLPRIDRIIRCSLRSQ--GLPVPAIEPVPENSVSTVEERTPEDRERWWKMGLKAISEGKLA 118 (493)
T ss_pred HHHHHHHHHHHhc------CHHHHHHHHHHHhhcc--CCchhccCCCChhhccchhccChHHHHHHHHHHHHHHhcCCEE
Confidence 4456666666432 3444667777777432 46899999988776666655431 123456799999 6999
Q ss_pred EEEEcCCCCCcCCCCCCcccc--ccCCCCchHHHHHHHHHHhhh----------hcCCcccEEEecCCCChHHHHHHHHH
Q 012172 82 VLKLNGGLGTTMGCTGPKSVI--EVRNGLTFLDLIVIQIENLNA----------KYGCNVPLLLMNSFNTHDDTSKIIEK 149 (469)
Q Consensus 82 vviLAGG~GTRmg~~~PK~l~--~v~~gks~L~~~~~~i~~l~~----------~~~~~iplviMtS~~t~e~t~~~~~~ 149 (469)
||+||||||||||+++||+|+ ++++++||||++++++++++. .+++.|||+||||+.||++|++||++
T Consensus 119 vvlLAGGqGTRLG~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~T~~ff~~ 198 (493)
T PLN02435 119 VVLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEATRKFFES 198 (493)
T ss_pred EEEeCCCcccccCCCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhHHHHHHHHh
Confidence 999999999999999999998 568999999999999999875 24688999999999999999999998
Q ss_pred h--cC-CCCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-cc
Q 012172 150 Y--SK-SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LG 225 (469)
Q Consensus 150 ~--~g-~~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~ 225 (469)
| +| .+.+|+||+|+++||++.+|+++++++ ++++|+|+||||+|.+|.+||+|++|+++|++|++|+|+|| |+
T Consensus 199 ~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~---~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~ 275 (493)
T PLN02435 199 HKYFGLEADQVTFFQQGTLPCVSKDGKFIMETP---FKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNALV 275 (493)
T ss_pred CCCCCCCccceEEEecCCcceECCCCCcccCCC---cccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEecccccc
Confidence 4 56 567899999999999999999999865 78999999999999999999999999999999999999999 99
Q ss_pred ccccHHHHHHHHHcCCcceEEEeeeccCCCcceEEEE--eCCeeEEEEeccCChhhhhhc---cccccccEEEEEeEEEe
Q 012172 226 AIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLIS--YEGKVQLLEIAQVPDEHVNEF---KSIEKFKIFNTNNLWVN 300 (469)
Q Consensus 226 ~~~dp~~Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~--~~g~~~ivEy~~~~~e~~~~~---~~~~~~~~~Nt~~~~~~ 300 (469)
+++||.||||++.++++++++|++|+.+++++|++|+ .+|++++|||+|++++..+.. ++...|..+|+++|+|+
T Consensus 276 ~~~DP~flG~~~~~~~d~~~kVv~K~~~~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~~~~~g~L~~~~gnI~~h~fs 355 (493)
T PLN02435 276 RVADPTFLGYFIDKGVASAAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDQAMASAINQQTGRLRYCWSNVCLHMFT 355 (493)
T ss_pred cccCHHHHHHHHhcCCceEEEeeecCCCCCceeEEEEecCCCCEEEEEeccCCHHHHhccCccccccccchhhHHHhhcc
Confidence 9999999999999999999999999999999999998 589999999999998875543 35678999999999999
Q ss_pred HHHHHHHHHhcccccccccCCCcCC----CcceehhHHHhhhHhhhcccceeEeecCc-cccccCCchh-----HHHHHH
Q 012172 301 LKAIKRLVEADALKMEIIPNPKEVD----GIKVLQLETAAGAAIRFFDHAIGCNVHRS-RFLPVKATSD-----LLLVQS 370 (469)
Q Consensus 301 l~~L~~~l~~~~~~lp~~~n~K~~~----g~~~iqle~~~~d~~~~~~~~~~v~v~r~-eF~pVKn~~d-----L~~~~~ 370 (469)
+++|+++.+.....||||++.|+++ .+++||||+|+||+|++++++.+++|+|+ ||+||||+.+ ..+|+.
T Consensus 356 ~~fL~~~~~~~~~~l~~H~A~Kkip~~~~~~ngiK~E~FiFDvf~~a~~~~~~eV~R~~EFaPlKN~~g~~~Dsp~tar~ 435 (493)
T PLN02435 356 LDFLNQVANGLEKDSIYHLAEKKIPSIHGYTMGLKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPESARL 435 (493)
T ss_pred HHHHHHHHHhhhhcCCceeeccccCccCCCcceEEeeeeeecchhhcCceEEEEEchhhccCcccCCCCCCCCCHHHHHH
Confidence 9999999865555699999999987 35799999999999999999999999997 9999999854 799999
Q ss_pred HHHHhhcCceeecCCccCCCC----CeEEECCCcc
Q 012172 371 DLYTLADGFVTRNEARKNPAN----PTIELGPEFK 401 (469)
Q Consensus 371 ~~~~l~~g~l~~~~~r~~~~~----p~V~l~~~~~ 401 (469)
++..++..|+..+|..+.+.. ..|+++|.++
T Consensus 436 ~l~~~~~~wl~~aG~~~~~~~~~~~~~vEisP~~s 470 (493)
T PLN02435 436 LVLRLHTRWVVAAGGFLTHSVPLYATGVEVSPLCS 470 (493)
T ss_pred HHHHHHHHHHHHcCCEecCCccccCCcEEeCCcee
Confidence 999999999999987553222 2688998865
No 7
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.5e-74 Score=588.38 Aligned_cols=435 Identities=41% Similarity=0.643 Sum_probs=384.9
Q ss_pred HHHHHHHHHHhh-hhcccChh--HHHHHHHHHHHHhhcC--CCCccCCccccCCCCccccCCCCCCCCCChhhHHHhccc
Q 012172 5 AEKLTQLKSAVA-GLNQISEN--EKNGFINLVARYLSGE--AQHVEWSKIQTPTDKIVVPCDSLAPVPEDPAETKKLLDK 79 (469)
Q Consensus 5 ~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~l~k 79 (469)
+.+|+++.+..+ ..++.++. .++.|..+|++|+.+. +..++|+.++|+.++.++.|++... +.+..+...++|
T Consensus 28 ~h~l~~l~~~s~~~~~~~~~~~~~~d~~f~l~~~~ll~~s~~s~~~~~ki~~~~~d~~~~~~~~~~--~~~~l~~~~~~k 105 (472)
T COG4284 28 EHLLDKLKQSSEKQALKSFEKLLLLDIFFFLFSRYLLNTSKASTQEWDKIRPPNPDDVVDYEKKIL--EGWGLLKIKLGK 105 (472)
T ss_pred HHHHHHhhhhchHHHHhhhhhhhhhHHHHHHHHHHHhhcCcccceeecccCCCChhhhccchhhcc--chhhhhhhhcCc
Confidence 667777777665 45566666 8999999999999974 3599999999999998888887753 222223345889
Q ss_pred eeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHH--hcC-CCCc
Q 012172 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEK--YSK-SNVE 156 (469)
Q Consensus 80 ~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~--~~g-~~~~ 156 (469)
+|||+||||||||||+++||++++|+.|+||||++++|++.++++|+++|||+||||. |+++|..+|+. |++ ++.+
T Consensus 106 lAvl~LaGGqGtrlG~~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~-nt~~t~s~f~~~~Y~~~~k~~ 184 (472)
T COG4284 106 LAVLKLAGGQGTRLGCDGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSL-NTEETDSYFKSNDYFGLDKED 184 (472)
T ss_pred eEEEEecCCcccccccCCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecC-CcHHHHHHHhhhhhcCCCHHH
Confidence 9999999999999999999999999889999999999999999999999999999995 88999999986 556 4778
Q ss_pred eEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHH
Q 012172 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHL 236 (469)
Q Consensus 157 i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~ 236 (469)
|.||.|+.+||+..++..++.+..+++ ++|+|+||||+|.+|..||++++|.++|++|++|+|+|||++++||.+||++
T Consensus 185 I~fF~Q~~~P~~~~~sg~~~~~~~~~~-~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~~~lg~~ 263 (472)
T COG4284 185 IFFFVQSLFPRLLSDSGLPFLESDDSN-LAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDLKFLGFM 263 (472)
T ss_pred eEEEecCCcceeecccCccccccCCcc-cccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCHHHHHHH
Confidence 999999999977776666666654333 9999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEEeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKME 316 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp 316 (469)
+.++++++||++.|+++++++|+++.++|+++++||+|+|++++++|++...++++|+||+|+++..++.+.+.....||
T Consensus 264 ~~~~~e~~~e~t~Kt~a~ekvG~Lv~~~g~~rllEysev~~~~~~~~~s~~~~~~~n~Nni~l~~~~~~~l~~~~~l~Lp 343 (472)
T COG4284 264 AETNYEYLMETTDKTKADEKVGILVTYDGKLRLLEYSEVPNEHREEFTSDGKLKYFNTNNIWLHLFSVKFLKEAAYLNLP 343 (472)
T ss_pred HhcCcceeEEEeecccccccceEEEEeCCceEEEEEecCChhHhhhhccccceeeeccccceeehhHHHHHHhhhccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred cccCCCcCCCc-ceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHHhhcCceeecCCccCCCCCeEE
Q 012172 317 IIPNPKEVDGI-KVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIE 395 (469)
Q Consensus 317 ~~~n~K~~~g~-~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l~~g~l~~~~~r~~~~~p~V~ 395 (469)
+|.|.|+++.. .++|++++++.++..|++ ||.| .||+...++ +++.+...| |.....|.+.
T Consensus 344 i~~a~Kki~~~~~~~~~~t~i~~~i~kfe~---------~FI~----fDlF~~~s~----~~~~~~~vp-R~~~f~Plkn 405 (472)
T COG4284 344 IHKAIKKIPQLDNIIQLTTAIGKNISKFEN---------EFIP----FDLFLYKSD----ENGGLLLVP-RFGEFSPLKN 405 (472)
T ss_pred chhhhcccCccccceeeccccccchhhccc---------cccc----eeeeEEEec----CCCceEecc-ccCCCCchhh
Confidence 99999999743 589999999987777754 2777 777777666 778888999 8766789999
Q ss_pred E-CCCcccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEEecCCCceeeCCCCeeecceecCC
Q 012172 396 L-GPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGP 466 (469)
Q Consensus 396 l-~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~le~~~v~~~ 466 (469)
+ +..|.+++++..++..+|.+++..+++|.|+|.||++|.+. .+++...++||.++++|+++|.++
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~is~nv~~~~~~~lk-----~~~e~~~l~~~~~s~~e~~ii~~~ 472 (472)
T COG4284 406 LEGSHFDNVETFTCGIPRIPLILELEGLTISGNVLFGRNVTLK-----YASENTSLCIPNKSFLENVIITGN 472 (472)
T ss_pred ccCCCCCcHHhhhcccccccchhhhccceecCceEeeecceee-----ecCCCceEeccCCeeeeeeeEecC
Confidence 9 44588999999999999999999999999999999999998 567777788999999999999775
No 8
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=100.00 E-value=5.6e-69 Score=564.21 Aligned_cols=389 Identities=19% Similarity=0.246 Sum_probs=319.2
Q ss_pred HHHHHHHHHh-hhhcccChhHHHHHHHHHHHHhhc---CC------CCccCCccccCCCCccccCCCCC-CCCCChhhHH
Q 012172 6 EKLTQLKSAV-AGLNQISENEKNGFINLVARYLSG---EA------QHVEWSKIQTPTDKIVVPCDSLA-PVPEDPAETK 74 (469)
Q Consensus 6 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~------~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~g~ 74 (469)
++..+|..++ ..+.. .+.+.+.+++++.... .. ..+.-+.++|++++...+..+.+ ....+++.|+
T Consensus 23 ~e~~~l~~ql~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~Gl 99 (482)
T PTZ00339 23 GEFTPLATQILSSLTN---VDFKHRNAVLEPKLEEYNAEAPVGIDIDSIHNCNIEPPNNNTFIDIYEKEKERKELKESGL 99 (482)
T ss_pred HHHHHHHHHHHHHhhc---cCHHHHHHHHHHHhhhhhcccccccccccccccccCCCCcccccccccCHHHHHHHHHhHH
Confidence 4445566655 43332 3445556666655532 11 11234668998875443332211 1123556799
Q ss_pred Hhcc--ceeEEEEcCCCCCcCCCCCCccccccC--CCCchHHHHHHHHHHhhhhc--------CCcccEEEecCCCChHH
Q 012172 75 KLLD--KLVVLKLNGGLGTTMGCTGPKSVIEVR--NGLTFLDLIVIQIENLNAKY--------GCNVPLLLMNSFNTHDD 142 (469)
Q Consensus 75 ~~l~--k~avviLAGG~GTRmg~~~PK~l~~v~--~gks~L~~~~~~i~~l~~~~--------~~~iplviMtS~~t~e~ 142 (469)
++|+ |+++|+||||+|||||++.||+|++|. +|+||||++++++++++..+ ++.+||+||||++|++.
T Consensus 100 ~~i~~gkvavViLAGG~GTRLg~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~ 179 (482)
T PTZ00339 100 EIIKKGEVAVLILAGGLGTRLGSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQ 179 (482)
T ss_pred HHHhcCCeEEEEECCCCcCcCCCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHH
Confidence 9996 699999999999999999999999984 79999999999999997644 46799999999999999
Q ss_pred HHHHHHHh--cC-CCCceEEEEecCcceecCC-CCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEE
Q 012172 143 TSKIIEKY--SK-SNVEIHTFNQSQYPRLCAD-DFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFA 218 (469)
Q Consensus 143 t~~~~~~~--~g-~~~~i~~f~Q~~~P~l~~~-~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v 218 (469)
|++||++| +| .+.+|++|.|+++||++.+ |++++.++ ++++|+|+||||+|.+|.++|+|++|.++|++|++|
T Consensus 180 t~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~---~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v 256 (482)
T PTZ00339 180 TRQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQ---GSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQV 256 (482)
T ss_pred HHHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCC---CceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEE
Confidence 99999984 46 4678999999999999865 77777655 789999999999999999999999999999999999
Q ss_pred EeCcc-ccccccHHHHHHHHHcCC-cceEEEeeeccCCCcceEEEEeCCeeEEEEeccCChhhhh---hccccccccEEE
Q 012172 219 ANSDN-LGAIVDLKILNHLIQNKN-EYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVN---EFKSIEKFKIFN 293 (469)
Q Consensus 219 ~n~DN-L~~~~dp~~Lg~~~~~~~-~~~~~v~~k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~---~~~~~~~~~~~N 293 (469)
+|+|| |++++||.||||++++++ +++.+|+ |+.+++++|++|+.+|++.+|||+|++++..+ .+++...|..+|
T Consensus 257 ~~vDN~L~k~~DP~flG~~~~~~~~~~~~kvv-k~~~~EkvG~~~~~~g~~~vvEYsEi~~~~~~~~~~~~g~l~f~~gn 335 (482)
T PTZ00339 257 ISIDNILAKVLDPEFIGLASSFPAHDVLNKCV-KREDDESVGVFCLKDYEWQVVEYTEINERILNNDELLTGELAFNYGN 335 (482)
T ss_pred EecCcccccccCHHHhHHHHHCCchhheeeee-cCCCCCceeEEEEeCCcccEEEEeccChhhhhcccccCCeecccccc
Confidence 99999 899999999999999999 7777777 88999999999999999999999999876543 334677889999
Q ss_pred EEeEEEeHHHHHHHHHh-cccccccccCCCcCC-------CcceehhHHHhhhHhhhcccceeEeecCc-cccccCCchh
Q 012172 294 TNNLWVNLKAIKRLVEA-DALKMEIIPNPKEVD-------GIKVLQLETAAGAAIRFFDHAIGCNVHRS-RFLPVKATSD 364 (469)
Q Consensus 294 t~~~~~~l~~L~~~l~~-~~~~lp~~~n~K~~~-------g~~~iqle~~~~d~~~~~~~~~~v~v~r~-eF~pVKn~~d 364 (469)
+|+|||++++|++++++ ....||+|++.|+++ .+++||||+|+||+|++.+++.+++|+|+ ||+||||+.+
T Consensus 336 I~~h~fsl~fl~~~~~~~~~~~l~~H~a~Kkip~~~~~~~~png~K~E~FiFDvf~~~~~~~~~ev~R~~eFsPlKNa~g 415 (482)
T PTZ00339 336 ICSHIFSLDFLKKVAANRLYESTPYHAARKKIPYINGPTDKTMGIKLEAFIFDIFRYAKNVLILEVDREDEFAPIKNADG 415 (482)
T ss_pred eEEEEEEHHHHHHHhhhhhhhcCCceeeccccCeeCCCCCCcceeeehhhhhhHHHhccccceeeechhhccccccCCCC
Confidence 99999999999998863 334699999999997 24799999999999999999999999997 9999999866
Q ss_pred -----HHHHHHHHHHhhcCceeecCCccCCC----CCeEEECCCcc
Q 012172 365 -----LLLVQSDLYTLADGFVTRNEARKNPA----NPTIELGPEFK 401 (469)
Q Consensus 365 -----L~~~~~~~~~l~~g~l~~~~~r~~~~----~p~V~l~~~~~ 401 (469)
..+|++++..++..|+..++..+.+. .-.|+++|.+.
T Consensus 416 ~~~d~p~tar~~l~~~~~~wl~~ag~~~~~~~~~~~~~~Eisp~~s 461 (482)
T PTZ00339 416 AAADTILNAQKLLLSLHTRWLEAALETVAGNPREGLNLCEISPLVS 461 (482)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCeeeccccCCCceEEecCcce
Confidence 89999999999999999999865431 23578888755
No 9
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=100.00 E-value=1.9e-68 Score=539.24 Aligned_cols=293 Identities=24% Similarity=0.360 Sum_probs=268.8
Q ss_pred CChhhHHHhcc--ceeEEEEcCCCCCcCCCCCCcccccc--CCCCchHHHHHHHHHHhhhhcC------CcccEEEecCC
Q 012172 68 EDPAETKKLLD--KLVVLKLNGGLGTTMGCTGPKSVIEV--RNGLTFLDLIVIQIENLNAKYG------CNVPLLLMNSF 137 (469)
Q Consensus 68 ~~~~~g~~~l~--k~avviLAGG~GTRmg~~~PK~l~~v--~~gks~L~~~~~~i~~l~~~~~------~~iplviMtS~ 137 (469)
++++.|+++|+ ++|+|+||||+|||||++.||+|+|| ++|+||||++++++++++..++ +.+||+||||+
T Consensus 2 ~~~~~G~~~i~~~~va~viLaGG~GTRLg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~ 81 (323)
T cd04193 2 EWEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSE 81 (323)
T ss_pred hHHHHhHHHHhcCCEEEEEECCCcccccCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcCh
Confidence 35678999997 99999999999999999999999998 4699999999999999987776 78999999999
Q ss_pred CChHHHHHHHHH--hcC-CCCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCc
Q 012172 138 NTHDDTSKIIEK--YSK-SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKE 214 (469)
Q Consensus 138 ~t~e~t~~~~~~--~~g-~~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~ 214 (469)
+||++|++||++ |+| .+++|++|.|+++||++.+|+++++.+ ++++|+|+||||+|.+|.+||+|++|+++|++
T Consensus 82 ~t~~~t~~~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~---~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~ 158 (323)
T cd04193 82 ATHEETRKFFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEK---GKIAMAPNGNGGLYKALQTAGILEDMKKRGIK 158 (323)
T ss_pred hHhHHHHHHHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCC---CccccCCCCchHHHHHHHHCChHHHHHhCCCE
Confidence 999999999998 446 467899999999999999999998865 78999999999999999999999999999999
Q ss_pred EEEEEeCcc-ccccccHHHHHHHHHcCCcceEEEeeeccCCCcceEEEEeCCeeEEEEeccCChhhhhhcccccc--ccE
Q 012172 215 YVFAANSDN-LGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEK--FKI 291 (469)
Q Consensus 215 ~v~v~n~DN-L~~~~dp~~Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~--~~~ 291 (469)
|++|+|+|| |++++||.+|||+++++++++++|++|+.+++++|++|+.+|+++++||+|+|++..+.+++... |..
T Consensus 159 yi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~ekvG~l~~~~g~~~vvEysel~~~~~~~~~~~g~l~f~~ 238 (323)
T cd04193 159 YIHVYSVDNILVKVADPVFIGFCISKGADVGAKVVRKRYPTEKVGVVVLVDGKPQVVEYSEISDELAEKRDADGELQYNA 238 (323)
T ss_pred EEEEEecCcccccccCHHHhHHHHHcCCceEEEEEECCCCCCceeEEEEECCeEEEEEeecCCHHHHhccCcCCcEeccc
Confidence 999999999 99999999999999999999999999999999999999999999999999999999888765444 444
Q ss_pred EEEEeEEEeHHHHHHHHHhcccccccccCCCcCC------------CcceehhHHHhhhHhhhcccceeEeecCc-cccc
Q 012172 292 FNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVD------------GIKVLQLETAAGAAIRFFDHAIGCNVHRS-RFLP 358 (469)
Q Consensus 292 ~Nt~~~~~~l~~L~~~l~~~~~~lp~~~n~K~~~------------g~~~iqle~~~~d~~~~~~~~~~v~v~r~-eF~p 358 (469)
.|+++++|++++|+++++.....||+|+|.|+++ +++++|||+|+||+|++++++.+++|+|+ ||+|
T Consensus 239 ~ni~~~~fsl~fl~~~~~~~~~~l~~h~a~Kki~~~d~~~~~~~p~~~n~~klE~fifd~~~~~~~~~~~eV~R~~~F~P 318 (323)
T cd04193 239 GNIANHFFSLDFLEKAAEMEEPSLPYHIAKKKIPYVDLEGGLVKPDEPNGIKLELFIFDVFPFAKNFVCLEVDREEEFSP 318 (323)
T ss_pred chHhhheeCHHHHHHHHhhccccCCceEeccccCcccCcCcEeccCCCcEEEeHHHHHHHHHhCCceEEEEEChhhcccc
Confidence 4666677999999999987666899999999973 35799999999999999999999999998 8999
Q ss_pred cCCch
Q 012172 359 VKATS 363 (469)
Q Consensus 359 VKn~~ 363 (469)
|||+.
T Consensus 319 vKn~~ 323 (323)
T cd04193 319 LKNAD 323 (323)
T ss_pred CcCCC
Confidence 99974
No 10
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=100.00 E-value=7.1e-64 Score=499.82 Aligned_cols=281 Identities=24% Similarity=0.232 Sum_probs=247.9
Q ss_pred eeEEEEcCCCCCcCCCCCCcccccc--CCCCchHHHHHHHHHHhhh----hcCCcccEEEecCCCChHHHHHHHHHh--c
Q 012172 80 LVVLKLNGGLGTTMGCTGPKSVIEV--RNGLTFLDLIVIQIENLNA----KYGCNVPLLLMNSFNTHDDTSKIIEKY--S 151 (469)
Q Consensus 80 ~avviLAGG~GTRmg~~~PK~l~~v--~~gks~L~~~~~~i~~l~~----~~~~~iplviMtS~~t~e~t~~~~~~~--~ 151 (469)
+|+|+||||||||||+++||++++| ++|+||||++++||+++++ .+++.|||+||||+.||++|++||++| +
T Consensus 1 ~a~vllaGG~GTRLG~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n~yF 80 (315)
T cd06424 1 AVFVLVAGGLGERLGYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEENNYF 80 (315)
T ss_pred CEEEEecCCCccccCCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHCCcc
Confidence 5899999999999999999999987 7999999999999999997 678899999999999999999999984 4
Q ss_pred C-CCCceEEEEecCcceec-CCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccc
Q 012172 152 K-SNVEIHTFNQSQYPRLC-ADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIV 228 (469)
Q Consensus 152 g-~~~~i~~f~Q~~~P~l~-~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~ 228 (469)
| .+++|++|+|+++||++ .+|++++. ..++++++|+|+||||+|.+|+++|+|++|+++|++|++|+|+|| |++.+
T Consensus 81 Gl~~~~V~fF~Q~~~P~l~~~~g~l~~~-l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~~a 159 (315)
T cd06424 81 GLEKDQVHILKQEKVFCLIDNDAHLALD-PDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAFKA 159 (315)
T ss_pred CCCcccEEEEecCceEEEecCCCCcccc-cCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhhcc
Confidence 6 56789999999999997 78887531 122488999999999999999999999999999999999999999 99999
Q ss_pred cHHHHHHHHHcCCcceEEEeeeccCCCcceEEEE---eCCeeEE--EEeccCChhhhhhccc------ccccc--EEEEE
Q 012172 229 DLKILNHLIQNKNEYCMEVTPKTLADVKGGTLIS---YEGKVQL--LEIAQVPDEHVNEFKS------IEKFK--IFNTN 295 (469)
Q Consensus 229 dp~~Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~---~~g~~~i--vEy~~~~~e~~~~~~~------~~~~~--~~Nt~ 295 (469)
||.++|+++.++++++.+|++ +.+.|++|++|+ .||+.++ |||+|++++..+...+ ...++ ..|||
T Consensus 160 dP~fiG~~~~~~~d~~~k~v~-~~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~~~s~f~gNi~ 238 (315)
T cd06424 160 IPAVLGVSATKSLDMNSLTVP-RKPKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDDKTGFSPFPGNIN 238 (315)
T ss_pred ChhhEEEEecCCCceEeEEEe-CCCCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCcccccccccCCCeee
Confidence 999999999999999999998 477899999997 5688877 9999999876553311 22233 55999
Q ss_pred eEEEeHHHHHHHHHhcccccccccCCCcCCCcc-----eehhHHHhhhHhhh---cccceeEeecCc-cccccCCc
Q 012172 296 NLWVNLKAIKRLVEADALKMEIIPNPKEVDGIK-----VLQLETAAGAAIRF---FDHAIGCNVHRS-RFLPVKAT 362 (469)
Q Consensus 296 ~~~~~l~~L~~~l~~~~~~lp~~~n~K~~~g~~-----~iqle~~~~d~~~~---~~~~~~v~v~r~-eF~pVKn~ 362 (469)
+|+|++++|.+.++++...+|+|+|.|+.++.. -.+||++|+|+... ..++.+++|+|+ +|+||||.
T Consensus 239 ~~~f~l~~~~~~l~~~~~~~~~~~n~ky~d~~~~~~~~p~rlE~~m~D~~~~f~~~~~~~~~~~~r~~~fsP~KN~ 314 (315)
T cd06424 239 QLVFSLGPYMDELEKTKGAIPEFINPKYKDATKTAFKSPTRLECMMQDIPLLFEEDYRVGFTVLDRWLCFSPVKNN 314 (315)
T ss_pred eEEEeHHHHHHHHhhccccCeeeecCCcccCCCCeecCchHHHHHHHHHHHhhcccceeEEEEEchhhcccccCCC
Confidence 999999999999998888999999999987432 26999999999555 678899999998 89999995
No 11
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=100.00 E-value=2.9e-59 Score=461.51 Aligned_cols=251 Identities=38% Similarity=0.513 Sum_probs=233.5
Q ss_pred eeEEEEcCCCCCcCCCCCCccccccC--CCCchHHHHHHHHHHhhhhc--CCcccEEEecCCCChHHHHHHHHHhcCCCC
Q 012172 80 LVVLKLNGGLGTTMGCTGPKSVIEVR--NGLTFLDLIVIQIENLNAKY--GCNVPLLLMNSFNTHDDTSKIIEKYSKSNV 155 (469)
Q Consensus 80 ~avviLAGG~GTRmg~~~PK~l~~v~--~gks~L~~~~~~i~~l~~~~--~~~iplviMtS~~t~e~t~~~~~~~~g~~~ 155 (469)
+|+|+||||+|||||++.||+|++|. +|+||||++++++++++..+ +..|||+||||++|++.|++||++|.....
T Consensus 1 va~viLaGG~GtRLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~~~~~ 80 (266)
T cd04180 1 VAVVLLAGGLGTRLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKINQKNS 80 (266)
T ss_pred CEEEEECCCCccccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcCCCCC
Confidence 58999999999999999999999984 69999999999999998877 788999999999999999999999874456
Q ss_pred ceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccHHHHH
Q 012172 156 EIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDLKILN 234 (469)
Q Consensus 156 ~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp~~Lg 234 (469)
++++|.|+++|+++.+|...++.+ ++++|+|+||||+|.+|..+|+|++|+++|++|++|+|+|| |+.++||.++|
T Consensus 81 ~v~~f~Q~~~P~~~~~~~~~~~~~---~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~~lG 157 (266)
T cd04180 81 YVITFMQGKLPLKNDDDARDPHNK---TKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPLFIG 157 (266)
T ss_pred ceEEEEeCCceEEeCCCCcccCCC---CceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHHHHH
Confidence 899999999999999998866543 77899999999999999999999999999999999999999 77777999999
Q ss_pred HHHHcCCcceEEEeeeccCCCcceEEEEeC-CeeEEEEeccCChhhhhh--------ccccccccEEEEEeEEEeHHHHH
Q 012172 235 HLIQNKNEYCMEVTPKTLADVKGGTLISYE-GKVQLLEIAQVPDEHVNE--------FKSIEKFKIFNTNNLWVNLKAIK 305 (469)
Q Consensus 235 ~~~~~~~~~~~~v~~k~~~~~~~G~iv~~~-g~~~ivEy~~~~~e~~~~--------~~~~~~~~~~Nt~~~~~~l~~L~ 305 (469)
+++.++++++++|++|+.+++++|+++..+ |+++++||+|+|++..++ +++...|.++|||||||++++|+
T Consensus 158 ~~~~~~~~~~~kvv~K~~~d~k~G~~~~~~~g~~~~vEyse~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~l~~l~ 237 (266)
T cd04180 158 IAIQNRKAINQKVVPKTRNEESGGYRIANINGRVQLLEYDQIKKLLKQKMVNNQIPKDIDDAPFFLFNTNNLINFLVEFK 237 (266)
T ss_pred HHHHcCCCEEEEEEECCCCCCeEEEEEEecCCCEEEEEeccCCHHHHhccccccCcCCCCceeeccceEEEEEEEHHHHH
Confidence 999999999999999999999999999987 999999999999988765 56677899999999999999999
Q ss_pred HHHHhcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCc-cccccCC
Q 012172 306 RLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRS-RFLPVKA 361 (469)
Q Consensus 306 ~~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~-eF~pVKn 361 (469)
++++ |+|++|+++.+++|+|+ ||+||||
T Consensus 238 ~~~~----------------------------d~~~~~~~~~~~~v~r~~~F~PvKn 266 (266)
T cd04180 238 DRVD----------------------------DIIEFTDDIVGVMVHRAEEFAPVKN 266 (266)
T ss_pred HHHH----------------------------HHHhccCceEEEEeCchhccccCCC
Confidence 9874 89999999999999998 9999998
No 12
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=2.3e-58 Score=470.68 Aligned_cols=384 Identities=20% Similarity=0.232 Sum_probs=324.0
Q ss_pred HHHHHHHHHHhhhhcccChhHHHHHHHHHHHHhhcCCCCccCCccccCCCCccccCCCCC--CCCCChhhHHHhcc--ce
Q 012172 5 AEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLA--PVPEDPAETKKLLD--KL 80 (469)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~--~~~~~~~~g~~~l~--k~ 80 (469)
+++.++|+.+|..++-....++.. ..+.. . . .+-.+++|.++..+.++.... ..+.++..|+++++ ++
T Consensus 27 ~~~~~~l~~~ie~l~l~~~~~~~~--~~a~~----~-~-~~~~~~~p~p~~~~~~~~~~~~~d~d~~~~~G~~~i~~~~~ 98 (477)
T KOG2388|consen 27 EADKESLLDQIEVLNLSRIHGLQR--ISANE----D-S-KPVGEIRPVPESKSWPLKERGLDDVDQWWKEGLRLIAEGKV 98 (477)
T ss_pred HHHHHHHHHHHHhhcccccchhhh--cChhh----c-c-CcccccCCCCccccceecccCchhhhHHHhcChhhhhcCcc
Confidence 344456777776666555544433 11111 1 1 333677888876654443332 22335667999995 99
Q ss_pred eEEEEcCCCCCcCCCCCCcccccc--CCCCchHHHHHHHHHHhhh------hcCCcccEEEecCCCChHHHHHHHHH--h
Q 012172 81 VVLKLNGGLGTTMGCTGPKSVIEV--RNGLTFLDLIVIQIENLNA------KYGCNVPLLLMNSFNTHDDTSKIIEK--Y 150 (469)
Q Consensus 81 avviLAGG~GTRmg~~~PK~l~~v--~~gks~L~~~~~~i~~l~~------~~~~~iplviMtS~~t~e~t~~~~~~--~ 150 (469)
++++||||||||+|++.||+++++ ++|+|+||+++++|++++. ..|+.|||+||||..|+|.|.+||+. |
T Consensus 99 a~~llaGgqgtRLg~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~~f~~~~~ 178 (477)
T KOG2388|consen 99 AVVLLAGGQGTRLGSSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLEYFESHKY 178 (477)
T ss_pred eEEEeccCceeeeccCCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHhHHhhcCC
Confidence 999999999999999999999875 7899999999999999884 24589999999999999999999997 4
Q ss_pred cC-CCCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccc
Q 012172 151 SK-SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIV 228 (469)
Q Consensus 151 ~g-~~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~ 228 (469)
+| .+.||++|.|+++||++.+|+++++++ .+++++|.|||++|.++.++ |.+|..+|+.|++|+|+|| |++.+
T Consensus 179 FGl~~~qv~~f~Q~~l~c~~~~gk~~le~k---~~~a~ap~gngg~y~ai~~~--l~dm~~rgi~~~hiy~VdnvL~k~a 253 (477)
T KOG2388|consen 179 FGLKPEQVTFFQQGKLPCLDLDGKFILEQK---NSLAAAPDGNGGLYRAIKDQ--LEDMAARGIFYDHIYCVDNVLLKVA 253 (477)
T ss_pred CCCChhHeeeeecccccccccCCceeccCc---cchhcCCCCCcHHHHHHHhh--hhHHHhhcccEEEEEEecceeeEec
Confidence 56 467999999999999999999888776 89999999999999999988 9999999999999999999 99999
Q ss_pred cHHHHHHHHHcCCcceEEEeeeccCCCcceEEEEeC-CeeEEEEeccCChhhhhhcc---ccccccEEEEEeEEEeHHHH
Q 012172 229 DLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISYE-GKVQLLEIAQVPDEHVNEFK---SIEKFKIFNTNNLWVNLKAI 304 (469)
Q Consensus 229 dp~~Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~~~-g~~~ivEy~~~~~e~~~~~~---~~~~~~~~Nt~~~~~~l~~L 304 (469)
||.|+||++.++++++.++|+|.++.|.+|++|..+ |.+++|||+|++++...... +...+...|+++|+|.+++|
T Consensus 254 DP~fiG~~it~~~d~~~k~V~k~~p~E~vG~~~~~~~G~~~vvEYsEi~~~~a~~~~~d~g~l~~~agnI~nh~ft~dFL 333 (477)
T KOG2388|consen 254 DPVFIGFSITKEADVAAKVVPKINPGEVVGIVALKGQGTPLVVEYSELDAELAKAKAPDGGRLLFNAGNICNHFFTLDFL 333 (477)
T ss_pred ccceeeEEeechhhHhhhhccccCCCCceEEEEecCCCceeEEEecccCHHHHhhcccccCccccCCccHHHHHHhhHHH
Confidence 999999999999999999999999999999999987 99999999999988766542 34566778999999999999
Q ss_pred HHHHHhcccccccccCCCcCC------------CcceehhHHHhhhHhhhcccceeEeecCc-cccccCCc-----hhHH
Q 012172 305 KRLVEADALKMEIIPNPKEVD------------GIKVLQLETAAGAAIRFFDHAIGCNVHRS-RFLPVKAT-----SDLL 366 (469)
Q Consensus 305 ~~~l~~~~~~lp~~~n~K~~~------------g~~~iqle~~~~d~~~~~~~~~~v~v~r~-eF~pVKn~-----~dL~ 366 (469)
++........||+|.+.|+++ .+++|++|+|++|.+++.+++.+++|+|+ +|+|+||. +.+.
T Consensus 334 kk~~~~~~~~lp~H~a~kKip~~~~~g~~~kP~kpnGik~E~fifdvf~~~k~f~~meV~Re~efSPlKng~~~~~D~p~ 413 (477)
T KOG2388|consen 334 KKVTRASVPLLPYHKAEKKIPYVDSTGKLVKPTKPNGIKLEQFIFDVFPSAKKFGLMEVPREEEFSPLKNGGKSSTDNPS 413 (477)
T ss_pred HHhhhcccccchhhhhhccccccccCCcccCCCCCCceeEEeeeeeecccccceeEEecchhhhcCccccCCCCCCCChh
Confidence 999887777799999999986 24699999999999999999999999997 99999995 3589
Q ss_pred HHHHHHHHhhcCceeecCCccCCCCCeEEECCCcc
Q 012172 367 LVQSDLYTLADGFVTRNEARKNPANPTIELGPEFK 401 (469)
Q Consensus 367 ~~~~~~~~l~~g~l~~~~~r~~~~~p~V~l~~~~~ 401 (469)
+++.++-.++..|+..++..+.+..-.|+++|..+
T Consensus 414 T~~~~~l~~h~~wi~~~g~~f~~~~~~~evs~~vs 448 (477)
T KOG2388|consen 414 TARIALLRLHIRWIEKAGGIFSDAEAVVEVSPLVS 448 (477)
T ss_pred HHHHHHHHhhhhehhccCcEEecCcceEEecceee
Confidence 99999999999999999998866545688888744
No 13
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.9e-43 Score=353.42 Aligned_cols=311 Identities=16% Similarity=0.239 Sum_probs=257.4
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
.+.+||||+|+||||+|+.||+||+| +||||++|+++.+..+..+ ++.+|+ ++ ..|.+++.+.+. .++.
T Consensus 2 ~~~~vILAAGkGTRMkS~lPKVLH~v-aGkpMl~hVi~~a~~l~~~---~i~vVv--Gh-~ae~V~~~~~~~----~~v~ 70 (460)
T COG1207 2 SLSAVILAAGKGTRMKSDLPKVLHPV-AGKPMLEHVIDAARALGPD---DIVVVV--GH-GAEQVREALAER----DDVE 70 (460)
T ss_pred CceEEEEecCCCccccCCCcccchhc-cCccHHHHHHHHHhhcCcc---eEEEEE--cC-CHHHHHHHhccc----cCce
Confidence 56899999999999999999999999 9999999999999999876 677777 66 889999888752 2589
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCc-EEEEEeCcc-ccccccHH-HHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKE-YVFAANSDN-LGAIVDLK-ILNH 235 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~-~v~v~n~DN-L~~~~dp~-~Lg~ 235 (469)
|+.|.. |.|+|++..+.. ..+..+.+ .++|+|+|. |.....+. ++.+
T Consensus 71 ~v~Q~e------------------------qlGTgHAV~~a~------~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~ 120 (460)
T COG1207 71 FVLQEE------------------------QLGTGHAVLQAL------PALADDYDGDVLVLYGDVPLITAETLEELLAA 120 (460)
T ss_pred EEEecc------------------------cCChHHHHHhhh------hhhhcCCCCcEEEEeCCcccCCHHHHHHHHHh
Confidence 999984 589999976654 33444555 899999999 98875554 6666
Q ss_pred HHHcCCcceEEEeeeccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccc
Q 012172 236 LIQNKNEYCMEVTPKTLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADAL 313 (469)
Q Consensus 236 ~~~~~~~~~~~v~~k~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~ 313 (469)
+...++...+ .+.+.++|.+||||++. +|++ +|||.+|+++++ +.++++|+|+|+|+...|.+||.+
T Consensus 121 ~~~~~~~~tv-Lt~~~~dP~GYGRIvr~~~g~V~~IVE~KDA~~ee-------k~I~eiNtGiy~f~~~~L~~~L~~--- 189 (460)
T COG1207 121 HPAHGAAATV-LTAELDDPTGYGRIVRDGNGEVTAIVEEKDASEEE-------KQIKEINTGIYAFDGAALLRALPK--- 189 (460)
T ss_pred hhhcCCceEE-EEEEcCCCCCcceEEEcCCCcEEEEEEcCCCCHHH-------hcCcEEeeeEEEEcHHHHHHHHHH---
Confidence 6554544433 36667889999999997 5676 799999999999 889999999999999999999998
Q ss_pred ccccccCCCcCCCcc----eehhHHHhhhHhhhcccceeEeecC-ccccccCCchhHHHHHHHHH------HhhcCceee
Q 012172 314 KMEIIPNPKEVDGIK----VLQLETAAGAAIRFFDHAIGCNVHR-SRFLPVKATSDLLLVQSDLY------TLADGFVTR 382 (469)
Q Consensus 314 ~lp~~~n~K~~~g~~----~iqle~~~~d~~~~~~~~~~v~v~r-~eF~pVKn~~dL~~~~~~~~------~l~~g~l~~ 382 (469)
+.|+|.+ ||| ++.+...-+ ..+.++.++. +|+++|||+.+|+.+|+.|| +|.+|+.+.
T Consensus 190 ----l~nnNaq-gEYYLTDvI~i~~~~g------~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~ 258 (460)
T COG1207 190 ----LSNNNAQ-GEYYLTDVIAIARNEG------EKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLI 258 (460)
T ss_pred ----hcccccc-CcEeHHHHHHHHHhCC------CeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEe
Confidence 8898865 886 343333333 4667788876 49999999999999999988 578899999
Q ss_pred cCCccCCCCCeEEECCCcccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecc
Q 012172 383 NEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENK 461 (469)
Q Consensus 383 ~~~r~~~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~ 461 (469)
+|+++ ...+.|+++++.. |. .+++++|++.+|++|+|+.+|+|+ +..++.+.|.+|||||++
T Consensus 259 dP~t~-~i~~dv~ig~Dvv--------I~--------p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s 321 (460)
T COG1207 259 DPATT-YIRGDVEIGRDVV--------IE--------PNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGS 321 (460)
T ss_pred CCCeE-EEcCcEEECCceE--------Ee--------cCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeecc
Confidence 99987 4667788877766 64 789999999999999999999999 457778999999999999
Q ss_pred eecCCCCC
Q 012172 462 EINGPGDL 469 (469)
Q Consensus 462 ~v~~~~~~ 469 (469)
.|+.+..|
T Consensus 322 ~vg~~~~V 329 (460)
T COG1207 322 TVGEGATV 329 (460)
T ss_pred EecCCccc
Confidence 99987654
No 14
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.90 E-value=2.3e-21 Score=205.47 Aligned_cols=312 Identities=16% Similarity=0.207 Sum_probs=188.1
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
.+.+|+||||+||||+.+.||.|+++ .|+||++|+++++.+...+ .+++.+++ ..+.+.+++.. .++.
T Consensus 5 ~~~aiILAaG~gtR~~~~~pK~l~~i-~gkpli~~~l~~l~~~~~~-----~iivv~~~-~~~~i~~~~~~-----~~~~ 72 (456)
T PRK14356 5 TTGALILAAGKGTRMHSDKPKVLQTL-LGEPMLRFVYRALRPLFGD-----NVWTVVGH-RADMVRAAFPD-----EDAR 72 (456)
T ss_pred ceeEEEEcCCCCccCCCCCCceeccc-CCCcHHHHHHHHHHhcCCC-----cEEEEECC-CHHHHHHhccc-----cCce
Confidence 57789999999999999999999999 9999999999998775311 34444465 56666666532 1244
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~~ 236 (469)
+..|. .|.|+|+..... ++.|...+.++++++++|+ +....+. .++..+
T Consensus 73 ~v~~~------------------------~~~Gt~~al~~a-----~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~ 123 (456)
T PRK14356 73 FVLQE------------------------QQLGTGHALQCA-----WPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEA 123 (456)
T ss_pred EEEcC------------------------CCCCcHHHHHHH-----HHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHH
Confidence 44443 146777654322 2344444568999999999 6654332 223222
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEEeCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLISYEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKM 315 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~l 315 (469)
.+.+.++.+. +..++..+|++...+|++ .++|..+.++.+.. ......|+|+|+|+.+.++++++.
T Consensus 124 --~~~~~~l~~~-~~~~~~~~g~v~~~~g~V~~~~ek~~~~~~~~~-----~~~~~~~~GiY~f~~~~l~~ll~~----- 190 (456)
T PRK14356 124 --AGADLAFMTL-TLPDPGAYGRVVRRNGHVAAIVEAKDYDEALHG-----PETGEVNAGIYYLRLDAVESLLPR----- 190 (456)
T ss_pred --hcCCEEEEEE-EcCCCCCceEEEEcCCeEEEEEECCCCChHHhh-----hhcCeEEEEEEEEEHHHHHHHHHh-----
Confidence 1444444333 344567789887777877 57887776644211 123578999999999999888764
Q ss_pred ccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecC-ccccccCCchhHHHHHHHHHH------hhcCceeecCCccC
Q 012172 316 EIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHR-SRFLPVKATSDLLLVQSDLYT------LADGFVTRNEARKN 388 (469)
Q Consensus 316 p~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r-~eF~pVKn~~dL~~~~~~~~~------l~~g~l~~~~~r~~ 388 (469)
+...... ++ +.+..++..+...-.++.++.+.. ++|..|++..||..++..+.. +..++...+|.
T Consensus 191 --l~~~~~~-~e--~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~--- 262 (456)
T PRK14356 191 --LTNANKS-GE--YYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPE--- 262 (456)
T ss_pred --ccCcccC-Cc--EEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCC---
Confidence 3211111 22 344444444443333456666644 589999999999888776653 23345444442
Q ss_pred CCCCeEEECCCcccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecceecCC
Q 012172 389 PANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENKEINGP 466 (469)
Q Consensus 389 ~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~~v~~~ 466 (469)
.+.+++...- +. ...|. ..++|.|.+++|+|++|+.+|+|. +..++.+.|.++|+|++++|+.+
T Consensus 263 ----~~~i~~~~~i-~~-~~~i~--------~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~ 327 (456)
T PRK14356 263 ----SVRIGPRATI-EP-GAEIY--------GPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDG 327 (456)
T ss_pred ----cEEECCCcEE-CC-CCEEe--------CCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecc
Confidence 2444443220 00 01121 345566666777777776666666 23444455555555555544433
No 15
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.88 E-value=5.2e-20 Score=193.56 Aligned_cols=307 Identities=18% Similarity=0.204 Sum_probs=194.9
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
++.+||||||+||||+...||.|+|+ .|+|+++|+++++.+.. -.++|.+++ ..+.+.+++.++.. .+.
T Consensus 2 ~~~aiIlAaG~GtRl~~~~pK~Llpi-~gkPli~~~i~~l~~~~------~~i~Ivv~~-~~~~i~~~~~~~~~---~v~ 70 (430)
T PRK14359 2 KLSIIILAAGKGTRMKSSLPKVLHTI-CGKPMLFYILKEAFAIS------DDVHVVLHH-QKERIKEAVLEYFP---GVI 70 (430)
T ss_pred CccEEEEcCCCCccCCCCCCceeCEE-CCccHHHHHHHHHHHcC------CcEEEEECC-CHHHHHHHHHhcCC---ceE
Confidence 46789999999999999999999999 99999999999998752 134444565 67888888876421 355
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccHHHHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDLKILNHLI 237 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp~~Lg~~~ 237 (469)
++.|.. +.+.|+|+++..+ +...+++++.++|+ +. ++..+..+.
T Consensus 71 ~~~~~~----------------------~~~~gt~~al~~~----------~~~~d~vlv~~gD~p~~---~~~~l~~l~ 115 (430)
T PRK14359 71 FHTQDL----------------------ENYPGTGGALMGI----------EPKHERVLILNGDMPLV---EKDELEKLL 115 (430)
T ss_pred EEEecC----------------------ccCCCcHHHHhhc----------ccCCCeEEEEECCccCC---CHHHHHHHH
Confidence 555542 1256788875431 11247999999999 54 345566666
Q ss_pred HcCCcceEEEeeeccCCCcceEEEEeCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccc
Q 012172 238 QNKNEYCMEVTPKTLADVKGGTLISYEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKME 316 (469)
Q Consensus 238 ~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp 316 (469)
+.+++..+.+.+.. ++..+|++..++|++ .++|....+.++ ......|+|.|+|+.+.+.++++.
T Consensus 116 ~~~~~~~v~~~~~~-~~~~~g~v~~d~g~v~~i~e~~~~~~~~-------~~~~~~~~Giyif~~~~l~~~~~~------ 181 (430)
T PRK14359 116 ENDADIVMSVFHLA-DPKGYGRVVIENGQVKKIVEQKDANEEE-------LKIKSVNAGVYLFDRKLLEEYLPL------ 181 (430)
T ss_pred hCCCCEEEEEEEcC-CCccCcEEEEcCCeEEEEEECCCCCccc-------ccceEEEeEEEEEEHHHHHHHHHh------
Confidence 66677666555443 345688876667876 577776554332 223567999999999999988764
Q ss_pred cccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHHh------hcCceeecCCccCCC
Q 012172 317 IIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTL------ADGFVTRNEARKNPA 390 (469)
Q Consensus 317 ~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l------~~g~l~~~~~r~~~~ 390 (469)
..+.+ .+++ +.++..+..++..-.++.+++++...+..|.+..||..++..+... ..|.+...|.++. .
T Consensus 182 -~~~~~-~~~e--~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~-~ 256 (430)
T PRK14359 182 -LKNQN-AQKE--YYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIY-I 256 (430)
T ss_pred -cCccc-ccCc--eehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeE-E
Confidence 22111 1122 2334444444444345566777666789999999999988765532 2344333333211 1
Q ss_pred CCe------EEECCCcccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEEecCCCceeeCCCCeeecceec
Q 012172 391 NPT------IELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEIN 464 (469)
Q Consensus 391 ~p~------V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~le~~~v~ 464 (469)
.+. +.++++.. |. ..+.++ ++.+|+++.|+++++..+..|..+.|.++|+|++++|+
T Consensus 257 ~~~~~i~g~~~ig~~~~--------I~--------~~~~i~-~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig 319 (430)
T PRK14359 257 ESGVEFEGECELEEGVR--------IL--------GKSKIE-NSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIG 319 (430)
T ss_pred CCCcEEcCceEECCCCE--------EC--------CCeEEE-eeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEc
Confidence 112 22222211 21 344454 66677777776644433556666777778888777777
Q ss_pred CCC
Q 012172 465 GPG 467 (469)
Q Consensus 465 ~~~ 467 (469)
.+.
T Consensus 320 ~~~ 322 (430)
T PRK14359 320 NFV 322 (430)
T ss_pred CcE
Confidence 654
No 16
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.86 E-value=1e-19 Score=194.54 Aligned_cols=313 Identities=18% Similarity=0.227 Sum_probs=197.0
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
+++.+|+||||+||||+...||.|+|+ .|+|||+++++++.+..-+ .+++.+++ ..+.++++++. ..+
T Consensus 6 ~~~~avILAaG~gtRl~~~~pK~llpi-~gkpli~~~l~~l~~~gi~-----~ivvv~~~-~~~~i~~~~~~-----~~i 73 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKSALPKVLHPV-AGRPMVAWAVKAARDLGAR-----KIVVVTGH-GAEQVEAALQG-----SGV 73 (481)
T ss_pred CCceEEEECCCCCCcCCCCCCceecEE-CCeeHHHHHHHHHHhCCCC-----eEEEEeCC-CHHHHHHHhcc-----CCc
Confidence 468899999999999998899999999 9999999999999876422 34444455 56777777642 124
Q ss_pred EEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHH
Q 012172 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNH 235 (469)
Q Consensus 158 ~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~ 235 (469)
.++.|. .|.|+|+.+.... +.+ ...-+.++|.++|+ +....+. .++.+
T Consensus 74 ~~v~~~------------------------~~~Gt~~al~~~~-----~~l-~~~~~~~lV~~gD~P~i~~~~l~~ll~~ 123 (481)
T PRK14358 74 AFARQE------------------------QQLGTGDAFLSGA-----SAL-TEGDADILVLYGDTPLLRPDTLRALVAD 123 (481)
T ss_pred EEecCC------------------------CcCCcHHHHHHHH-----HHh-hCCCCcEEEEeCCeeccCHHHHHHHHHH
Confidence 443332 2578888754322 222 22224578899999 6655443 44556
Q ss_pred HHHcCCcceEEEeeeccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccc
Q 012172 236 LIQNKNEYCMEVTPKTLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADAL 313 (469)
Q Consensus 236 ~~~~~~~~~~~v~~k~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~ 313 (469)
+.++++++.+.+.+. +++.+||++..+ +|++ .++|..+.++.+ .....+|+|.|.|+.+. .++++.
T Consensus 124 ~~~~~~~~ti~~~~~-~~~~~yG~v~~d~~g~v~~~~Ek~~~~~~~-------~~~~~~n~Giyi~~~~~-~~~~~~--- 191 (481)
T PRK14358 124 HRAQGSAMTILTGEL-PDATGYGRIVRGADGAVERIVEQKDATDAE-------KAIGEFNSGVYVFDARA-PELARR--- 191 (481)
T ss_pred HHhcCCeEEEEEEEc-CCCCCceEEEECCCCCEEEEEECCCCChhH-------hhCCeEEEEEEEEchHH-HHHHHh---
Confidence 666666665544333 355679998764 6776 588876654433 22356899999999664 344443
Q ss_pred ccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeec-CccccccCCchhHHHHHHHHH------HhhcCceeecCCc
Q 012172 314 KMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVH-RSRFLPVKATSDLLLVQSDLY------TLADGFVTRNEAR 386 (469)
Q Consensus 314 ~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~-r~eF~pVKn~~dL~~~~~~~~------~l~~g~l~~~~~r 386 (469)
+...+.. ++ +.|..++..++..-.++.++.+. .+++..++++.+|+.+++.+. .+..+.....|..
T Consensus 192 ----i~~~~~~-ge--~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 264 (481)
T PRK14358 192 ----IGNDNKA-GE--YYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGT 264 (481)
T ss_pred ----cCCCccC-Ce--EEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCe
Confidence 2222111 33 44556665555543445566554 368999999887766553332 2233444444432
Q ss_pred cCCCCCeEEECCCcccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecceecC
Q 012172 387 KNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENKEING 465 (469)
Q Consensus 387 ~~~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~~v~~ 465 (469)
+ ...|.+.+++... |. ..++|.|++++|++++|+.+|+|. +..++.+.|.++++|++++|+.
T Consensus 265 ~-~i~~~~~Ig~~~~--------I~--------~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~ 327 (481)
T PRK14358 265 I-LIEDTVTLGRDVT--------IE--------PGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGA 327 (481)
T ss_pred e-eccCCcEECCCCE--------Ee--------CCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeC
Confidence 2 1123344443322 42 578888888888888888888887 4466667788888888877776
Q ss_pred CCC
Q 012172 466 PGD 468 (469)
Q Consensus 466 ~~~ 468 (469)
+..
T Consensus 328 ~~~ 330 (481)
T PRK14358 328 GSD 330 (481)
T ss_pred ceE
Confidence 543
No 17
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.85 E-value=2.6e-19 Score=190.01 Aligned_cols=309 Identities=18% Similarity=0.229 Sum_probs=189.7
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
++.+|+||||+||||+...||.|+|+ .|+|+++++++++....-+ .+++.+++ ..+.+++++.. ..+.
T Consensus 5 ~~~aiIlAaG~gtRl~~~~pK~l~~i-~gkpli~~~i~~l~~~gi~-----~i~vv~~~-~~~~i~~~~~~-----~~~~ 72 (456)
T PRK09451 5 AMSVVILAAGKGTRMYSDLPKVLHTL-AGKPMVQHVIDAANELGAQ-----HVHLVYGH-GGDLLKQTLAD-----EPLN 72 (456)
T ss_pred CceEEEEcCCCCCcCCCCCChhccee-CChhHHHHHHHHHHhcCCC-----cEEEEECC-CHHHHHHhhcc-----CCcE
Confidence 57899999999999998899999999 9999999999999765321 34444465 55666666632 1345
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~~ 236 (469)
+..|. .+.|+|+.+.... +.+ . .-++++|.++|+ +....+. .++.++
T Consensus 73 ~i~~~------------------------~~~Gt~~al~~a~-----~~l-~-~~~~vlV~~gD~P~i~~~~i~~l~~~~ 121 (456)
T PRK09451 73 WVLQA------------------------EQLGTGHAMQQAA-----PFF-A-DDEDILMLYGDVPLISVETLQRLRDAK 121 (456)
T ss_pred EEECC------------------------CCCCcHHHHHHHH-----Hhh-c-cCCcEEEEeCCcccCCHHHHHHHHHHh
Confidence 44332 1567887643322 122 1 236899999999 6554342 222222
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEEeCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLISYEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKM 315 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~l 315 (469)
.+ ...++ ++.+..++..+|++...+|++ .++|....+++. ...+..|+|+|.|+.+.|.++++.
T Consensus 122 ~~--~~~~i-~~~~~~~~~~yG~v~~~~g~V~~~~EKp~~~~~~-------~~~~~~~~GiYi~~~~~l~~~l~~----- 186 (456)
T PRK09451 122 PQ--GGIGL-LTVKLDNPTGYGRITRENGKVVGIVEQKDATDEQ-------RQIQEINTGILVANGADLKRWLAK----- 186 (456)
T ss_pred hc--CCEEE-EEEEcCCCCCceEEEecCCeEEEEEECCCCChHH-------hhccEEEEEEEEEEHHHHHHHHHh-----
Confidence 21 12222 233334556789876567777 588876554432 234578999999999999888765
Q ss_pred ccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCc-cccccCCchhHHHHHHHHHH------hhcCceeecCCccC
Q 012172 316 EIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRS-RFLPVKATSDLLLVQSDLYT------LADGFVTRNEARKN 388 (469)
Q Consensus 316 p~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~-eF~pVKn~~dL~~~~~~~~~------l~~g~l~~~~~r~~ 388 (469)
+.... ..++ +.++.++..++..-.++.++...+. ++.+.++..|+...++.++. +..+..+..|.+.
T Consensus 187 --~~~~~-~~~e--~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~- 260 (456)
T PRK09451 187 --LTNNN-AQGE--YYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARF- 260 (456)
T ss_pred --cCCcc-ccCc--eeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEE-
Confidence 22111 1123 3345555555554344555555454 88999999999888876653 2334333344422
Q ss_pred CCCCeEEECCCcccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecceecCCC
Q 012172 389 PANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENKEINGPG 467 (469)
Q Consensus 389 ~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~~v~~~~ 467 (469)
...+.+.+++... |. ..+.|+|++++|++|.|+.+|+|. +..++.+.|.++++|++++|+.+.
T Consensus 261 ~~~~~~~ig~~~~--------I~--------~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~ 324 (456)
T PRK09451 261 DLRGTLTHGRDVE--------ID--------TNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAAC 324 (456)
T ss_pred EECCcEEECCCCE--------Ec--------CCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCc
Confidence 1122344443222 31 456777777788888887777776 335555677777777766665544
No 18
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.84 E-value=3.7e-19 Score=184.48 Aligned_cols=326 Identities=14% Similarity=0.151 Sum_probs=193.4
Q ss_pred cceeEEEEcCCCCCcCCC---CCCccccccCCCC-chHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhc--
Q 012172 78 DKLVVLKLNGGLGTTMGC---TGPKSVIEVRNGL-TFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYS-- 151 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~---~~PK~l~~v~~gk-s~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~-- 151 (469)
+++-+||||||.||||+. +.||+|+|+ .|+ |+|+++++++...+-+ .++|.|++ ..+.++++|....
T Consensus 2 ~~m~avILAaG~GtRl~plT~~~PK~llpv-~gk~pli~~~l~~l~~~Gi~-----~i~iv~~~-~~~~i~~~~~~~~~~ 74 (380)
T PRK05293 2 KEMLAMILAGGQGTRLGKLTKNIAKPAVPF-GGKYRIIDFTLSNCANSGID-----TVGVLTQY-QPLELNNHIGIGSPW 74 (380)
T ss_pred CcEEEEEECCCCCcccchhhcCCccceeee-CCceeehhHHHHHHHhCCCC-----EEEEEecC-CHHHHHHHHhCCCcc
Confidence 367899999999999997 789999999 999 8999999999886532 34555565 7888888886421
Q ss_pred CCC---CceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccc
Q 012172 152 KSN---VEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIV 228 (469)
Q Consensus 152 g~~---~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~ 228 (469)
+.. ..+.+ .|.. .. ......|.|+|+++.... +.+....-++++|+++|++....
T Consensus 75 ~~~~~~~~~~i-~~~~-----------~~-----~~~~~~~~Gta~al~~a~-----~~l~~~~~~~~lV~~gD~l~~~d 132 (380)
T PRK05293 75 DLDRINGGVTI-LPPY-----------SE-----SEGGKWYKGTAHAIYQNI-----DYIDQYDPEYVLILSGDHIYKMD 132 (380)
T ss_pred cccCCCCCEEE-eCCc-----------cc-----CCCCcccCCcHHHHHHHH-----HHHHhCCCCEEEEecCCEEEcCC
Confidence 100 01111 1100 00 000112578988754332 22322223689999999966542
Q ss_pred cHHHHHHHHHcCCcceEEEee-eccCCCcceEEEEe-CCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHH
Q 012172 229 DLKILNHLIQNKNEYCMEVTP-KTLADVKGGTLISY-EGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKR 306 (469)
Q Consensus 229 dp~~Lg~~~~~~~~~~~~v~~-k~~~~~~~G~iv~~-~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~ 306 (469)
--.++..+..++++..+.+.. ....+.++|++..+ +|++.=++.+ |. . ......|+|+|+|+.+.|.+
T Consensus 133 ~~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~g~V~~~~eK--p~-~-------~~~~~~~~Giyi~~~~~l~~ 202 (380)
T PRK05293 133 YDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDENMRIVEFEEK--PK-N-------PKSNLASMGIYIFNWKRLKE 202 (380)
T ss_pred HHHHHHHHHhcCCCEEEEEEEcchhhccccCEEEECCCCcEEEEEeC--CC-C-------CCcceeeeEEEEEcHHHHHH
Confidence 235566666667776554422 23456789988764 5666323323 21 1 12356899999999999988
Q ss_pred HHHhcccccccccCCCcCCCcceehhHHHhhhHhhhc----ccceeEeecCccccccCCchhHHHHHHHHHHhhcCceee
Q 012172 307 LVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFF----DHAIGCNVHRSRFLPVKATSDLLLVQSDLYTLADGFVTR 382 (469)
Q Consensus 307 ~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~----~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l~~g~l~~ 382 (469)
++++ ..+.+ . +.+.+..|+++.. .++.++.++. .+.-|.+..++..++.++.....+....
T Consensus 203 ~l~~-------~~~~~-~------~~~~~~~d~i~~l~~~~~~v~~~~~~g-~w~digt~~~~~~a~~~~l~~~~~~~~~ 267 (380)
T PRK05293 203 YLIE-------DEKNP-N------SSHDFGKNVIPLYLEEGEKLYAYPFKG-YWKDVGTIESLWEANMELLRPENPLNLF 267 (380)
T ss_pred HHHH-------HhhcC-C------chhhhHHHHHHHHhhcCCeEEEEEeCC-EEEeCCCHHHHHHHHHHHcCCCchhhhc
Confidence 8764 21111 0 1112222333321 2344554442 6788999999999988877655443222
Q ss_pred cCC-cc---CCCCCeEEECCCcccccccccccccCCcccccCceEEEe---eEEECCCcEEeeeEEEEe-cCCCceeeCC
Q 012172 383 NEA-RK---NPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTG---DVWFGANITLKGKVTIAA-KSGEKLEIPD 454 (469)
Q Consensus 383 ~~~-r~---~~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G---~v~fg~~V~i~g~~~I~~-~~~~~~~I~~ 454 (469)
.+. ++ ....|.+.++|... +. ++++ ..+++|.| ++++|++++|+.+|+|++ -.+..+.|.+
T Consensus 268 ~~~~~~~~~~~~~~~~~i~~~~~--------i~--~~~I-g~~~~I~~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~ 336 (380)
T PRK05293 268 DRNWRIYSVNPNLPPQYIAENAK--------VK--NSLV-VEGCVVYGTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGE 336 (380)
T ss_pred CCCCceecCCcCCCCCEECCCCE--------Ee--cCEE-CCCCEEcceecceEEcCCCEECCCCEEECCEEeCCCEECC
Confidence 221 11 01223456665533 11 1222 25555554 457788888888777773 3556677888
Q ss_pred CCeeecceecCCCC
Q 012172 455 GAVLENKEINGPGD 468 (469)
Q Consensus 455 ~s~le~~~v~~~~~ 468 (469)
+|+|++++|+.+.+
T Consensus 337 ~~~i~~~ii~~~~~ 350 (380)
T PRK05293 337 NVVIERAIIGENAV 350 (380)
T ss_pred CeEEeEEEECCCCE
Confidence 88888887776554
No 19
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.84 E-value=1.2e-18 Score=186.30 Aligned_cols=292 Identities=15% Similarity=0.197 Sum_probs=180.8
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
+.+++|+||||.||||+.+.||.|+|+ .|+|||++.++++.+..- -.+++.+++ ..+.+.++++.+. ..+
T Consensus 3 ~~~~avILAaG~gtRm~~~~pK~llpi-~gkpli~~~l~~l~~~g~-----~~iivvv~~-~~~~i~~~~~~~~---~~~ 72 (482)
T PRK14352 3 RPTAVIVLAAGAGTRMRSDTPKVLHTL-AGRSMLGHVLHAAAGLAP-----QHLVVVVGH-DRERVAPAVAELA---PEV 72 (482)
T ss_pred CCceEEEEcCCCCCcCCCCCCceecee-CCccHHHHHHHHHHhcCC-----CcEEEEECC-CHHHHHHHhhccC---Ccc
Confidence 356789999999999998899999999 999999999999988642 245555565 5667777775421 123
Q ss_pred EEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHH
Q 012172 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNH 235 (469)
Q Consensus 158 ~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~ 235 (469)
.++.|. .|.|+|+.+.... +.+....-++++|+++|+ +....+. .++..
T Consensus 73 ~~~~~~------------------------~~~Gt~~si~~al-----~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~ 123 (482)
T PRK14352 73 DIAVQD------------------------EQPGTGHAVQCAL-----EALPADFDGTVVVTAGDVPLLDGETLADLVAT 123 (482)
T ss_pred EEEeCC------------------------CCCCcHHHHHHHH-----HHhccCCCCeEEEEeCCeeccCHHHHHHHHHH
Confidence 333332 2577877543222 222222346899999999 7655443 33444
Q ss_pred HHHcCCcceEEEeeeccCCCcceEEEE-eCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccc
Q 012172 236 LIQNKNEYCMEVTPKTLADVKGGTLIS-YEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADAL 313 (469)
Q Consensus 236 ~~~~~~~~~~~v~~k~~~~~~~G~iv~-~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~ 313 (469)
+...++++.+. +.+..++..+|++.. .+|++ .++|..+.+.++ ......|+|.|+|+.+.|.+++++
T Consensus 124 ~~~~~~~~~v~-~~~~~~p~~yg~~~~~~~g~V~~~~EKp~~~~~~-------~~~~~~~~Giy~f~~~~l~~~~~~--- 192 (482)
T PRK14352 124 HTAEGNAVTVL-TTTLDDPTGYGRILRDQDGEVTAIVEQKDATPSQ-------RAIREVNSGVYAFDAAVLRSALAR--- 192 (482)
T ss_pred HHhcCCeEEEE-EeecCCCCCCCEEEECCCCCEEEEEECCCCCHHH-------hhcceEEEEEEEEEHHHHHHHHHh---
Confidence 44445444333 334456778998776 46777 588877765544 334568999999999999888765
Q ss_pred ccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecC-ccccccCCchhHHHHHHHHH------HhhcCceeecCCc
Q 012172 314 KMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHR-SRFLPVKATSDLLLVQSDLY------TLADGFVTRNEAR 386 (469)
Q Consensus 314 ~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r-~eF~pVKn~~dL~~~~~~~~------~l~~g~l~~~~~r 386 (469)
+...+. .++ +.+..++..++..-.++.++.++. |+-.+.++..+|..+++.+. .+..|.....|+.
T Consensus 193 ----~~~~~~-~~e--~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~ 265 (482)
T PRK14352 193 ----LSSDNA-QGE--LYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPAT 265 (482)
T ss_pred ----hCcccc-CCc--EeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCe
Confidence 332221 123 334455554554434566666644 46667777777766555443 2233444444432
Q ss_pred cCCCCCeEEECCCcccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEE
Q 012172 387 KNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIA 443 (469)
Q Consensus 387 ~~~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~ 443 (469)
. -..|.|.+++... |. ..++|.|+|++|+|++|+.+|+|.
T Consensus 266 ~-~i~~~v~ig~~~~--------I~--------~~~~i~~~v~Ig~~~~I~~~~~i~ 305 (482)
T PRK14352 266 T-WIDVDVTIGRDVV--------IH--------PGTQLLGRTTIGEDAVVGPDTTLT 305 (482)
T ss_pred E-EEeCCEEECCCcE--------Ee--------CCcEEeecCEECCCCEECCCCEEe
Confidence 2 1234466665533 42 456667777777777777777665
No 20
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.83 E-value=2.3e-18 Score=183.00 Aligned_cols=314 Identities=15% Similarity=0.150 Sum_probs=197.8
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
++..|+||||.||||+...||.|+|+ .|+|++++.++++.+.+- -.+++.+++ ..+.+.+++.+. ..+.
T Consensus 3 ~~~avIlAaG~g~Rl~~~~pK~l~pi-~g~pli~~~l~~l~~~gi-----~~iiiv~~~-~~~~i~~~~~~~----~~i~ 71 (459)
T PRK14355 3 NLAAIILAAGKGTRMKSDLVKVMHPL-AGRPMVSWPVAAAREAGA-----GRIVLVVGH-QAEKVREHFAGD----GDVS 71 (459)
T ss_pred cceEEEEcCCCCcccCCCCCceecee-CCccHHHHHHHHHHhcCC-----CeEEEEECC-CHHHHHHHhccC----CceE
Confidence 57889999999999998899999999 999999999999887642 245555565 567777777531 1344
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-cccccc-HHHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVD-LKILNHL 236 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~d-p~~Lg~~ 236 (469)
+..|. .|.|+|+.+.... +.+ +...++++|+++|+ +....+ -.++.++
T Consensus 72 ~~~~~------------------------~~~Gt~~al~~a~-----~~l-~~~~~~vlv~~gD~p~~~~~~i~~l~~~~ 121 (459)
T PRK14355 72 FALQE------------------------EQLGTGHAVACAA-----PAL-DGFSGTVLILCGDVPLLRAETLQGMLAAH 121 (459)
T ss_pred EEecC------------------------CCCCHHHHHHHHH-----HHh-hccCCcEEEEECCccCcCHHHHHHHHHHH
Confidence 44443 2468887644322 222 22246899999999 655445 2455555
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEE-eCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLIS-YEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALK 314 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~-~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~ 314 (469)
...+++..+... +...+..+|.+.. .+|++ .++|.+..++.+ ......|+|+|+|+.+.+.+.++.
T Consensus 122 ~~~~~~~~v~~~-~~~~~~~~g~v~~d~~g~v~~~~ek~~~~~~~-------~~~~~~~~Giy~~~~~~l~~~l~~---- 189 (459)
T PRK14355 122 RATGAAVTVLTA-RLENPFGYGRIVRDADGRVLRIVEEKDATPEE-------RSIREVNSGIYCVEAAFLFDAIGR---- 189 (459)
T ss_pred HhcCCcEEEEEE-EcCCCCcCCEEEEcCCCCEEEEEEcCCCChhH-------hhccEEEEEEEEEeHHHHHHHHHH----
Confidence 555555544333 3344567888765 35666 577755433222 123467999999999988777654
Q ss_pred cccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecC-ccccccCCchhHHHHHHHHHHhh------cCceeecCCcc
Q 012172 315 MEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHR-SRFLPVKATSDLLLVQSDLYTLA------DGFVTRNEARK 387 (469)
Q Consensus 315 lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r-~eF~pVKn~~dL~~~~~~~~~l~------~g~l~~~~~r~ 387 (469)
+.+.. ....+.++.++...++.-.++.+++.+. +++..+.+..++..+++.+.... .+.....|...
T Consensus 190 ---~~~~~---~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~ 263 (459)
T PRK14355 190 ---LGNDN---AQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETT 263 (459)
T ss_pred ---cCccc---cCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCce
Confidence 22111 1112344555555554433455666654 47899999999988866544321 22222233210
Q ss_pred CCCCCeEEECCCcccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecceecCC
Q 012172 388 NPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENKEINGP 466 (469)
Q Consensus 388 ~~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~~v~~~ 466 (469)
...+.+.+++... |. .+++|.+++++|+++.|+.+|+|. +..|+.++|.+++++++++|+.+
T Consensus 264 -~i~~~v~ig~~~~--------I~--------~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~ 326 (459)
T PRK14355 264 -YIDRGVVIGRDTT--------IY--------PGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDD 326 (459)
T ss_pred -EECCCeEEcCCCE--------Ee--------CCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCC
Confidence 0112234433322 32 567888888889999998888888 44667788888888888877766
Q ss_pred CC
Q 012172 467 GD 468 (469)
Q Consensus 467 ~~ 468 (469)
..
T Consensus 327 ~~ 328 (459)
T PRK14355 327 VA 328 (459)
T ss_pred CE
Confidence 43
No 21
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.82 E-value=3.2e-18 Score=179.33 Aligned_cols=344 Identities=13% Similarity=0.151 Sum_probs=194.9
Q ss_pred hccceeEEEEcCCCCCcCC---CCCCccccccCCCC-chHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhc
Q 012172 76 LLDKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGL-TFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYS 151 (469)
Q Consensus 76 ~l~k~avviLAGG~GTRmg---~~~PK~l~~v~~gk-s~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~ 151 (469)
+.+++.+||||||.||||+ .+.||+|+|| .|+ |+++|+++++.+.+-+ .++|.+++ ..+.+.++|....
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv-~gk~plI~~~L~~l~~~Gi~-----~i~iv~~~-~~~~i~~~~~~~~ 74 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPF-GGSYRLIDFVLSNLVNSGYL-----RIYVLTQY-KSHSLDRHISQTW 74 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceee-CCcceEhHHHHHHHHHCCCC-----EEEEEecc-CHHHHHHHHHhCc
Confidence 3568899999999999999 7899999999 998 9999999999987533 34444455 7888999996422
Q ss_pred C-CCCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcccccccc-
Q 012172 152 K-SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVD- 229 (469)
Q Consensus 152 g-~~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~d- 229 (469)
. ....+.++.+. |. . ....+..|.|+||++.... +.+.....++++|+++|++... |
T Consensus 75 ~~~~~~~~~~~~~--~~---------~----~~~~~~~~lGta~al~~a~-----~~i~~~~~~~~lv~~gD~v~~~-dl 133 (407)
T PRK00844 75 RLSGLLGNYITPV--PA---------Q----QRLGKRWYLGSADAIYQSL-----NLIEDEDPDYVVVFGADHVYRM-DP 133 (407)
T ss_pred CccccCCCeEEEC--Cc---------c----cCCCCCcccCCHHHHHHHH-----HHHHhcCCCEEEEecCCEEEcC-CH
Confidence 1 11112222110 00 0 0001123689999864332 2333333468999999997653 4
Q ss_pred HHHHHHHHHcCCcceEEEee-eccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHH
Q 012172 230 LKILNHLIQNKNEYCMEVTP-KTLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKR 306 (469)
Q Consensus 230 p~~Lg~~~~~~~~~~~~v~~-k~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~ 306 (469)
-.++.++..+++++.+.+.. ...++..+|++..+ +|++ .++|-.+-+... + ......+.|+|+|.|+.+.|.+
T Consensus 134 ~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~---~-~~~~~~~~~~Giyi~~~~~l~~ 209 (407)
T PRK00844 134 RQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPDGRIRGFLEKPADPPGL---P-DDPDEALASMGNYVFTTDALVD 209 (407)
T ss_pred HHHHHHHHhcCCcEEEEEEecchHHcccCCEEEECCCCCEEEEEECCCCcccc---c-CCCCCcEEEeEEEEEeHHHHHH
Confidence 35677777777777665543 23456778988764 5776 466542221110 0 0122457899999999999888
Q ss_pred HHHhcccccccccCCCcCCCcceehhH-HHhhhHhhhcccceeEeec-----------CccccccCCchhHHHHHHHHHH
Q 012172 307 LVEADALKMEIIPNPKEVDGIKVLQLE-TAAGAAIRFFDHAIGCNVH-----------RSRFLPVKATSDLLLVQSDLYT 374 (469)
Q Consensus 307 ~l~~~~~~lp~~~n~K~~~g~~~iqle-~~~~d~~~~~~~~~~v~v~-----------r~eF~pVKn~~dL~~~~~~~~~ 374 (469)
++++ ..+.+. +. ..++ .++..++.. .++.+++.+ +..|.-|.+..++..+..++..
T Consensus 210 ~l~~-------~~~~~~--~~--~~~~~dii~~l~~~-~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~ 277 (407)
T PRK00844 210 ALRR-------DAADED--SS--HDMGGDIIPRLVER-GRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLS 277 (407)
T ss_pred HHHH-------hhcCCc--cc--ccchhhHHHHHhcc-CeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhC
Confidence 7764 111110 00 0111 111111111 123333332 1235667777788877777653
Q ss_pred hhcCceeecCC-----ccCCCCCeEEECCC-cc-cccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEEec-C
Q 012172 375 LADGFVTRNEA-----RKNPANPTIELGPE-FK-KVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAK-S 446 (469)
Q Consensus 375 l~~g~l~~~~~-----r~~~~~p~V~l~~~-~~-~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~~~-~ 446 (469)
.....-.-... +.....|....+.. .. .+. ...+ +....++ .++|++ +++|++|+|+.+|.|.++ .
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i-g~~~~I~--~~~i~~-svIg~~~~I~~~~~i~~sii 351 (407)
T PRK00844 278 VHPVFNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQ--DSLV-SAGSIIS--GATVRN-SVLSPNVVVESGAEVEDSVL 351 (407)
T ss_pred CCCccccCCCCCcccccCCCCCCceEecCCCccceEE--eCEE-cCCCEEC--CeeeEc-CEECCCCEECCCCEEeeeEE
Confidence 22111000000 00012233333211 00 000 1112 1111221 455654 788888888888888744 6
Q ss_pred CCceeeCCCCeeecceecCCCCC
Q 012172 447 GEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 447 ~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
++.+.|+++|+|++++|+.+.+|
T Consensus 352 ~~~~~i~~~~~i~~~ii~~~~~i 374 (407)
T PRK00844 352 MDGVRIGRGAVVRRAILDKNVVV 374 (407)
T ss_pred CCCCEECCCCEEEeeEECCCCEE
Confidence 67789999999999998877653
No 22
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.82 E-value=7.8e-18 Score=178.05 Aligned_cols=236 Identities=15% Similarity=0.144 Sum_probs=147.8
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
++.+|+||||+||||+...||.|+++ .|+|+|++.++.+....- -.+++.+++ ..+.+.+++.++. ..+.
T Consensus 5 ~~~aiILAaG~gsR~~~~~pK~ll~v-~gkpli~~~l~~l~~~gi-----~~ivvv~~~-~~~~i~~~~~~~~---~~~~ 74 (446)
T PRK14353 5 TCLAIILAAGEGTRMKSSLPKVLHPV-AGRPMLAHVLAAAASLGP-----SRVAVVVGP-GAEAVAAAAAKIA---PDAE 74 (446)
T ss_pred cceEEEEcCCCCCccCCCCCcccCEE-CCchHHHHHHHHHHhCCC-----CcEEEEECC-CHHHHHHHhhccC---CCce
Confidence 57899999999999998889999999 999999999999987642 134444455 5677777775421 1233
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccHH-HHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDLK-ILNHL 236 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp~-~Lg~~ 236 (469)
++.|. .|.|+++.+.... +. ++.+.++++|+++|. +....+.. ++. +
T Consensus 75 ~~~~~------------------------~~~G~~~sl~~a~-----~~-l~~~~~~~lv~~~D~P~i~~~~l~~l~~-~ 123 (446)
T PRK14353 75 IFVQK------------------------ERLGTAHAVLAAR-----EA-LAGGYGDVLVLYGDTPLITAETLARLRE-R 123 (446)
T ss_pred EEEcC------------------------CCCCcHHHHHHHH-----HH-HhccCCCEEEEeCCcccCCHHHHHHHHH-h
Confidence 33332 1456666543221 22 222347899999999 66543322 222 2
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEEeCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLISYEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKM 315 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~l 315 (469)
.+.+.+..+.+.+. ..+.++|.+...+|++ .+.|..+.++.+ ......|+|.|+|+.+.+.+++++
T Consensus 124 ~~~~~~~~i~~~~~-~~~~~~g~~~~~~g~v~~~~ek~~~~~~~-------~~~~~~~~Giy~~~~~~l~~~l~~----- 190 (446)
T PRK14353 124 LADGADVVVLGFRA-ADPTGYGRLIVKGGRLVAIVEEKDASDEE-------RAITLCNSGVMAADGADALALLDR----- 190 (446)
T ss_pred HhcCCcEEEEEEEe-CCCCcceEEEECCCeEEEEEECCCCChHH-------hhceEEEEEEEEEEHHHHHHHHHh-----
Confidence 33455555554443 4456788776666776 466655443322 122467999999999888777764
Q ss_pred ccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHH
Q 012172 316 EIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLY 373 (469)
Q Consensus 316 p~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~ 373 (469)
+.+.. .+++ +.++..+..+++.-.++.++..+.+.+..|.+..||..++..++
T Consensus 191 --~~~~~-~~~~--~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~ 243 (446)
T PRK14353 191 --VGNDN-AKGE--YYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQ 243 (446)
T ss_pred --hcccC-CCCc--EeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHH
Confidence 22111 1122 33445554455544445566665667899999999988876554
No 23
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.81 E-value=8.6e-18 Score=177.58 Aligned_cols=307 Identities=21% Similarity=0.257 Sum_probs=177.8
Q ss_pred eEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEEE
Q 012172 81 VVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTF 160 (469)
Q Consensus 81 avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~f 160 (469)
-+|+||||+||||+.+.||.|+++ .|+|++++.++++.+..- -.+++.+++ ..+.+.+++.++ ++.++
T Consensus 2 ~aiIlAaG~g~R~~~~~pK~l~~i-~gkpli~~~l~~l~~~g~-----~~iiiv~~~-~~~~i~~~~~~~-----~i~~~ 69 (451)
T TIGR01173 2 SVVILAAGKGTRMKSDLPKVLHPL-AGKPMLEHVIDAARALGP-----QKIHVVYGH-GAEQVRKALANR-----DVNWV 69 (451)
T ss_pred eEEEEcCCCCcccCCCCchhhcee-CCccHHHHHHHHHHhCCC-----CeEEEEECC-CHHHHHHHhcCC-----CcEEE
Confidence 478999999999998899999999 999999999999987542 244555566 567777777542 24444
Q ss_pred EecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHHHHH
Q 012172 161 NQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHLIQ 238 (469)
Q Consensus 161 ~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~~~~ 238 (469)
.|. .|.|+++.+.... +.+ + .-+++++.++|. +....+. .++-.+.+
T Consensus 70 ~~~------------------------~~~G~~~ai~~a~-----~~l-~-~~~~~lv~~~D~p~i~~~~~~~l~~~~~~ 118 (451)
T TIGR01173 70 LQA------------------------EQLGTGHAVLQAL-----PFL-P-DDGDVLVLYGDVPLISAETLERLLEAHRQ 118 (451)
T ss_pred EcC------------------------CCCchHHHHHHHH-----Hhc-C-CCCcEEEEECCcCCcCHHHHHHHHHHHhh
Confidence 332 1356766533221 122 1 126899999999 6544332 22222222
Q ss_pred cCCcceEEEeeeccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccc
Q 012172 239 NKNEYCMEVTPKTLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKME 316 (469)
Q Consensus 239 ~~~~~~~~v~~k~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp 316 (469)
...++ ++.+..++..+|.+..+ +|++ .+.|....++.+ ......|+|.|+|+.+.|.+.++.
T Consensus 119 --~~~~~-~~~~~~~~~~~g~v~~d~~g~v~~~~ek~~~~~~~-------~~~~~~~~G~y~~~~~~l~~~l~~------ 182 (451)
T TIGR01173 119 --NGITL-LTAKLPDPTGYGRIIRENDGKVTAIVEDKDANAEQ-------KAIKEINTGVYVFDGAALKRWLPK------ 182 (451)
T ss_pred --CCEEE-EEEecCCCCCCCEEEEcCCCCEEEEEEcCCCChHH-------hcCcEEEEEEEEEeHHHHHHHHHh------
Confidence 12222 33334456668877653 5666 466665544322 112357999999999998877754
Q ss_pred cccCCCcCCCcceehhHHHhhhHhhhcccceeEeecC-ccccccCCchhHHHHHHHHHH------hhcCceeecCCccCC
Q 012172 317 IIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHR-SRFLPVKATSDLLLVQSDLYT------LADGFVTRNEARKNP 389 (469)
Q Consensus 317 ~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r-~eF~pVKn~~dL~~~~~~~~~------l~~g~l~~~~~r~~~ 389 (469)
....+ ..++ +.++..+...+..-.++.++..+. +++..+.++.|+..++..+.. +..+.....|... .
T Consensus 183 -~~~~~-~~~e--~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~ 257 (451)
T TIGR01173 183 -LSNNN-AQGE--YYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARF-D 257 (451)
T ss_pred -ccccc-ccCc--EeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeE-E
Confidence 21111 1122 334555554444433455565554 478999999998777665442 2223322223221 1
Q ss_pred CCCeEEECCCcccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEEe-cCCCceeeCCCCeeecceecCCC
Q 012172 390 ANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAA-KSGEKLEIPDGAVLENKEINGPG 467 (469)
Q Consensus 390 ~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~~-~~~~~~~I~~~s~le~~~v~~~~ 467 (469)
..+.+.+++... |. .+++|.|++++|+|+.|+.+|+|.+ ..++.+.|.++++|++++|+.+.
T Consensus 258 i~~~~~ig~~~~--------i~--------~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~ 320 (451)
T TIGR01173 258 IRGTVEIGRDVE--------ID--------PNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGC 320 (451)
T ss_pred ECCccEECCCCE--------Ec--------CCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCc
Confidence 223344444322 32 4566666677777777766666663 34444555555555555555443
No 24
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=2.4e-17 Score=169.86 Aligned_cols=307 Identities=14% Similarity=0.161 Sum_probs=194.2
Q ss_pred eeEEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCc
Q 012172 80 LVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVE 156 (469)
Q Consensus 80 ~avviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~ 156 (469)
+-+|+||||.||||.- +.||+|+|+ .|||+++|+++.+.+.+-+ -+++.+++ ..+.++++|....+.+.+
T Consensus 2 mkavILagG~GtRLrPlT~~~PKPllpI-~gkPii~~~l~~L~~~Gv~-----eivi~~~y-~~~~i~~~~~d~~~~~~~ 74 (358)
T COG1208 2 MKAVILAGGYGTRLRPLTDDRPKPLLPI-AGKPLIEYVLEALAAAGVE-----EIVLVVGY-LGEQIEEYFGDGEGLGVR 74 (358)
T ss_pred ceEEEEeCCccccccccccCCCccccee-CCccHHHHHHHHHHHCCCc-----EEEEEecc-chHHHHHHHhcccccCCc
Confidence 4579999999999984 789999999 8999999999999886422 34444444 889999999875433446
Q ss_pred eEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHH
Q 012172 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHL 236 (469)
Q Consensus 157 i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~ 236 (469)
|.+..|. .|.|+|+.+.... .++ +.+-+++.|+|++....--.++.++
T Consensus 75 I~y~~e~------------------------~~lGTag~l~~a~------~~l--~~~~f~v~~GDv~~~~dl~~l~~~~ 122 (358)
T COG1208 75 ITYVVEK------------------------EPLGTAGALKNAL------DLL--GGDDFLVLNGDVLTDLDLSELLEFH 122 (358)
T ss_pred eEEEecC------------------------CcCccHHHHHHHH------Hhc--CCCcEEEEECCeeeccCHHHHHHHH
Confidence 7765555 2789999865432 222 2278999999998875323467777
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEEe-CC-ee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLISY-EG-KV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADAL 313 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~~-~g-~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~ 313 (469)
..+++...+..+....+ ..+|++... ++ ++ ..+|...- +. ..-...|+|.|+++.+.++ .++.
T Consensus 123 ~~~~~~~~~~~~~~~~~-~~~Gvv~~~~~~~~v~~f~ekp~~--~~-------~~~~~in~Giyi~~~~v~~-~i~~--- 188 (358)
T COG1208 123 KKKGALATIALTRVLDP-SEFGVVETDDGDGRVVEFREKPGP--EE-------PPSNLINAGIYIFDPEVFD-YIEK--- 188 (358)
T ss_pred HhccCccEEEEEecCCC-CcCceEEecCCCceEEEEEecCCC--CC-------CCCceEEeEEEEECHHHhh-hccc---
Confidence 66644445544544444 678877665 33 44 35554311 11 2225789999999999988 2221
Q ss_pred ccccccCCCcCCCcceehhHHHhhh-HhhhcccceeEeecCccccccCCchhHHHHHHHHHHhhcCc--eeecCCcc---
Q 012172 314 KMEIIPNPKEVDGIKVLQLETAAGA-AIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTLADGF--VTRNEARK--- 387 (469)
Q Consensus 314 ~lp~~~n~K~~~g~~~iqle~~~~d-~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l~~g~--l~~~~~r~--- 387 (469)
. .+..+ +.-.++ .++.-....++..+. .|..|-+..|++.+.+++....... ........
T Consensus 189 -------~----~~~~~--~~~~~~~l~~~~~~v~~~~~~g-~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 254 (358)
T COG1208 189 -------G----ERFDF--EEELLPALAAKGEDVYGYVFEG-YWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIR 254 (358)
T ss_pred -------C----Ccccc--hhhHHHHHHhCCCcEEEEEeCC-eEEeCCCHHHHHHHHHHHHhcccccccccccccccccc
Confidence 0 11111 111111 111111122232222 7999999999999999887432221 11100000
Q ss_pred -CCCCCeEEECCCcccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEEec-CCCceeeCCCCeeecceecC
Q 012172 388 -NPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAK-SGEKLEIPDGAVLENKEING 465 (469)
Q Consensus 388 -~~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~~~-~~~~~~I~~~s~le~~~v~~ 465 (469)
....+.+.+++... +. .+..|.+++.+|+|++|+.++.|+++ .-+.+.|.++|++.+++|+.
T Consensus 255 ~~~i~gp~~ig~~~~--------i~--------~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~ 318 (358)
T COG1208 255 SAYIIGPVVIGPGAK--------IG--------PGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGE 318 (358)
T ss_pred cceEeCCEEECCCCE--------EC--------CCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcC
Confidence 01112234443322 42 56678888999999999999888855 55668999999999999999
Q ss_pred CCCC
Q 012172 466 PGDL 469 (469)
Q Consensus 466 ~~~~ 469 (469)
|+.|
T Consensus 319 ~~~i 322 (358)
T COG1208 319 NCKI 322 (358)
T ss_pred CcEE
Confidence 8764
No 25
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=99.80 E-value=2.9e-17 Score=168.69 Aligned_cols=317 Identities=15% Similarity=0.120 Sum_probs=182.4
Q ss_pred EEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 82 vviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
+|+||||+||||+. ..||.|+|+ .|+|++++.++.+...+-+ .+++++++...+.+.+++......+.++.
T Consensus 2 aiIlAaG~gtRl~plt~~~pK~l~pv-~g~pli~~~l~~l~~~gi~-----~i~vv~~~~~~~~i~~~~~~~~~~~~~~~ 75 (353)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQLIPV-ANKPILQYAIEDLAEAGIT-----DIGIVVGPVTGEEIKEIVGEGERFGAKIT 75 (353)
T ss_pred EEEECCcCcCccCccccCCCccccEE-CCEeHHHHHHHHHHHCCCC-----EEEEEeCCCCHHHHHHHHhcccccCceEE
Confidence 68999999999985 789999999 9999999999999876422 45556666567888888865221122344
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQ 238 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~~~ 238 (469)
++.|. .|.|+++.+.... +.+ . .+.++|.++|++....--.++..+.+
T Consensus 76 ~~~~~------------------------~~~G~~~al~~a~-----~~l-~--~~~~li~~gD~~~~~~l~~l~~~~~~ 123 (353)
T TIGR01208 76 YIVQG------------------------EPLGLAHAVYTAR-----DFL-G--DDDFVVYLGDNLIQDGISRFVKSFEE 123 (353)
T ss_pred EEECC------------------------CCCCHHHHHHHHH-----Hhc-C--CCCEEEEECCeecCccHHHHHHHHHh
Confidence 44343 2578888754432 122 1 24577889999554321356666777
Q ss_pred cCCcceEEEeeeccCCCcceEEEEeC-Cee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccc
Q 012172 239 NKNEYCMEVTPKTLADVKGGTLISYE-GKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKME 316 (469)
Q Consensus 239 ~~~~~~~~v~~k~~~~~~~G~iv~~~-g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp 316 (469)
++++..+.+.+. .++..+|++..++ +++ .++|....+. -...|+|+|+|+.. +.+.+++
T Consensus 124 ~~~d~ti~~~~~-~~~~~~g~~~~~~~~~v~~~~ekp~~~~-----------~~~~~~Giy~~~~~-l~~~l~~------ 184 (353)
T TIGR01208 124 KDYDALILLTKV-RDPTAFGVAVLEDGKRILKLVEKPKEPP-----------SNLAVVGLYMFRPL-IFEAIKN------ 184 (353)
T ss_pred cCCCcEEEEEEC-CChhhCeEEEEcCCCcEEEEEECCCCCC-----------ccceEEEEEEECHH-HHHHHHh------
Confidence 788877666543 3456788876654 455 4676543221 14679999999994 4444443
Q ss_pred cccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHHhhcCcee-ecCCccCCCCCeEE
Q 012172 317 IIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTLADGFVT-RNEARKNPANPTIE 395 (469)
Q Consensus 317 ~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l~~g~l~-~~~~r~~~~~p~V~ 395 (469)
+.. . ..++ +.+..++..++..-.++.++.++. .+..|.+..||+.++.++.......+. ..+. . ...|.+.
T Consensus 185 -~~~-~-~~~e--~~l~d~l~~l~~~g~~v~~~~~~g-~w~digt~~dl~~a~~~ll~~~~~~~~~i~~~-~-~i~~~~~ 256 (353)
T TIGR01208 185 -IKP-S-WRGE--LEITDAIQWLIEKGYKVGGSKVTG-WWKDTGKPEDLLDANRLILDEVEREVQGVDDE-S-KIRGRVV 256 (353)
T ss_pred -cCC-C-CCCc--EEHHHHHHHHHHcCCeEEEEEeCc-EEEeCCCHHHHHHHHHHHHhhcccccCCcCCC-C-EEcCCEE
Confidence 111 1 1133 224455554544433455555543 478899999999999888753211111 0110 0 1223456
Q ss_pred ECCCcccccccccccccCCcccc-c---CceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCC-CeeecceecCCCC
Q 012172 396 LGPEFKKVGNFLSRFKSIPSIIE-L---DSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDG-AVLENKEINGPGD 468 (469)
Q Consensus 396 l~~~~~~~~~~~~~i~~~p~~~~-~---~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~-s~le~~~v~~~~~ 468 (469)
++++..- . ...|.+ |..+. . .+.+|.+++++|++++|+ +++|. +..++.+.|.++ |++++++|+.+.+
T Consensus 257 i~~~~~i-~--~~~i~~-~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~-~~~i~~s~i~~~~~i~~~~~~~~~~ii~~~~~ 330 (353)
T TIGR01208 257 VGEGAKI-V--NSVIRG-PAVIGEDCIIENSYIGPYTSIGEGVVIR-DAEVEHSIVLDESVIEGVQARIVDSVIGKKVR 330 (353)
T ss_pred ECCCCEE-e--CCEEEC-CcEECCCCEEcCcEECCCCEECCCCEEe-eeEEEeeEEcCCCEEcCCcceeecCEEcCCCE
Confidence 6555331 0 011111 11111 0 123455566666666665 34444 345555666666 4777777765543
No 26
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.79 E-value=2.9e-17 Score=173.82 Aligned_cols=232 Identities=16% Similarity=0.188 Sum_probs=145.5
Q ss_pred eeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEE
Q 012172 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHT 159 (469)
Q Consensus 80 ~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~ 159 (469)
+++|+||||.||||+.+.||.|+|+ .|+|+|++.++++....- ..+++.+++ ..+.+.++++++ ..+.+
T Consensus 2 ~~~iIlAaG~gsR~~~~~pK~ll~v-~gkpli~~~l~~l~~~g~-----~~iivvv~~-~~~~i~~~~~~~----~~i~~ 70 (450)
T PRK14360 2 LAVAILAAGKGTRMKSSLPKVLHPL-GGKSLVERVLDSCEELKP-----DRRLVIVGH-QAEEVEQSLAHL----PGLEF 70 (450)
T ss_pred ceEEEEeCCCCccCCCCCChhcCEE-CChhHHHHHHHHHHhCCC-----CeEEEEECC-CHHHHHHHhccc----CCeEE
Confidence 5789999999999999899999999 999999999999987642 234444455 455666666532 12444
Q ss_pred EEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHHHH
Q 012172 160 FNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHLI 237 (469)
Q Consensus 160 f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~~~ 237 (469)
+.|. .+.|+++.+.... +.+. ...++++|+++|. +....+. .++..+.
T Consensus 71 v~~~------------------------~~~G~~~sv~~~~-----~~l~-~~~~~vlV~~~D~P~i~~~~l~~ll~~~~ 120 (450)
T PRK14360 71 VEQQ------------------------PQLGTGHAVQQLL-----PVLK-GFEGDLLVLNGDVPLLRPETLEALLNTHR 120 (450)
T ss_pred EEeC------------------------CcCCcHHHHHHHH-----HHhh-ccCCcEEEEeCCccccCHHHHHHHHHHHH
Confidence 4433 1466766543322 2222 2235789999999 6554332 3344455
Q ss_pred HcCCcceEEEeeeccCCCcceEEEE-eCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccccc
Q 012172 238 QNKNEYCMEVTPKTLADVKGGTLIS-YEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKM 315 (469)
Q Consensus 238 ~~~~~~~~~v~~k~~~~~~~G~iv~-~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~l 315 (469)
+.++++.+. +.+..++..+|.+.. .+|++ .++|..+..+.+ ..-.+.|+|.|+|+.+.+.+++++
T Consensus 121 ~~~~~~~~~-~~~~~~~~~~g~~~~d~~g~v~~~~ek~~~~~~~-------~~~~~~~~Giy~f~~~~l~~~~~~----- 187 (450)
T PRK14360 121 SSNADVTLL-TARLPNPKGYGRVFCDGNNLVEQIVEDRDCTPAQ-------RQNNRINAGIYCFNWPALAEVLPK----- 187 (450)
T ss_pred hcCCcEEEE-EEecCCCCCccEEEECCCCCEEEEEECCCCChhH-------hcCcEEEEEEEEEEHHHHHHHHhh-----
Confidence 555555443 333445566887655 45776 577776554433 122468999999999999888764
Q ss_pred ccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecC-ccccccCCchhHHHHHHHHHH
Q 012172 316 EIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHR-SRFLPVKATSDLLLVQSDLYT 374 (469)
Q Consensus 316 p~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r-~eF~pVKn~~dL~~~~~~~~~ 374 (469)
....+ ..++ +.++.. ++.+.+...+.+.. .+...+++..||..++.-++.
T Consensus 188 --~~~~~-~~~e--~~~td~----i~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~ 238 (450)
T PRK14360 188 --LSSNN-DQKE--YYLTDT----VSLLDPVMAVEVEDYQEINGINDRKQLAQCEEILQN 238 (450)
T ss_pred --ccccc-cCCc--eeHHHH----HHHHhhceEEecCCHHHhhcCCCHHHHHHHHHHHHH
Confidence 21111 0122 233333 33333344555654 478899999999888877653
No 27
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.79 E-value=2.8e-17 Score=173.21 Aligned_cols=342 Identities=11% Similarity=0.095 Sum_probs=197.3
Q ss_pred HHHhccceeEEEEcCCCCCcCCC---CCCccccccCCCCc-hHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHH
Q 012172 73 TKKLLDKLVVLKLNGGLGTTMGC---TGPKSVIEVRNGLT-FLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIE 148 (469)
Q Consensus 73 g~~~l~k~avviLAGG~GTRmg~---~~PK~l~~v~~gks-~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~ 148 (469)
.+..-+++.+||||||.||||+. +.||.|+|+ .|+| ++++.++++...+-+ .++|.|++ ..+.+.++|.
T Consensus 9 ~~~~~~~~~aVILAaG~GtRl~pLT~~~PK~llpv-~gkp~lI~~~l~~l~~~Gi~-----~i~vv~~~-~~~~i~~~~~ 81 (425)
T PRK00725 9 ARQLTRDTLALILAGGRGSRLKELTDKRAKPAVYF-GGKFRIIDFALSNCINSGIR-----RIGVLTQY-KAHSLIRHIQ 81 (425)
T ss_pred hHhhhcceEEEEECCCCCCcchhhhCCCcceeEEE-CCEEEEhHHHHHHHHHCCCC-----eEEEEecC-CHHHHHHHHH
Confidence 34444789999999999999997 789999999 9997 999999999886422 34555565 7888888887
Q ss_pred HhcC-CC----CceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc
Q 012172 149 KYSK-SN----VEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN 223 (469)
Q Consensus 149 ~~~g-~~----~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN 223 (469)
+..+ .+ ..+..+.+. .....+..|.|+|+++.... +.+....-++++|+++|+
T Consensus 82 ~~~~~~~~~~~~~i~i~~~~-----------------~~~~~e~~~lGTa~al~~a~-----~~l~~~~~d~~lVl~gD~ 139 (425)
T PRK00725 82 RGWSFFREELGEFVDLLPAQ-----------------QRVDEENWYRGTADAVYQNL-----DIIRRYDPKYVVILAGDH 139 (425)
T ss_pred hhhcccccCCCCeEEEeCCc-----------------ccCCCCccccCcHHHHHHHH-----HHHHhcCCCEEEEecCCe
Confidence 5211 00 011111111 00112345789999864432 233333347899999999
Q ss_pred ccccccH-HHHHHHHHcCCcceEEEeee-ccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEE
Q 012172 224 LGAIVDL-KILNHLIQNKNEYCMEVTPK-TLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWV 299 (469)
Q Consensus 224 L~~~~dp-~~Lg~~~~~~~~~~~~v~~k-~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~ 299 (469)
+... |. .++.++.++++++.+.+... ..++..+|++..+ +|++ .++| +...+.. ........+.|+|+|.|
T Consensus 140 l~~~-dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~~~V~~~~E-Kp~~~~~---~~~~~~~~l~n~GIYi~ 214 (425)
T PRK00725 140 IYKM-DYSRMLADHVESGADCTVACLEVPREEASAFGVMAVDENDRITAFVE-KPANPPA---MPGDPDKSLASMGIYVF 214 (425)
T ss_pred Eecc-CHHHHHHHHHHcCCCEEEEEEecchhhcccceEEEECCCCCEEEEEE-CCCCccc---cccCccceEEEeeEEEE
Confidence 7654 43 66777777788877665432 2456788998775 5666 5787 3221110 00112345789999999
Q ss_pred eHHHHHHHHHhcccccccccC-CCcCCCcceehhHHHhhhHhhhc---ccceeEeecC----------ccccccCCchhH
Q 012172 300 NLKAIKRLVEADALKMEIIPN-PKEVDGIKVLQLETAAGAAIRFF---DHAIGCNVHR----------SRFLPVKATSDL 365 (469)
Q Consensus 300 ~l~~L~~~l~~~~~~lp~~~n-~K~~~g~~~iqle~~~~d~~~~~---~~~~~v~v~r----------~eF~pVKn~~dL 365 (469)
+.+.|.+++.+ ..+ ++ +. ..++ .|+++.. .++.++..+. .-|.-|.+..++
T Consensus 215 ~~~~L~~~L~~-------~~~~~~---~~--~~~~---~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y 279 (425)
T PRK00725 215 NADYLYELLEE-------DAEDPN---SS--HDFG---KDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAY 279 (425)
T ss_pred eHHHHHHHHHH-------hhcCCC---cc--chhh---HHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHH
Confidence 99999888764 111 11 11 1111 1222221 1233444331 247889999999
Q ss_pred HHHHHHHHHhhcCc--ee-ecCC--ccCCCCCeEEE--CCCcc-cccccccccccCCcccccCceEEEeeEEECCCcEEe
Q 012172 366 LLVQSDLYTLADGF--VT-RNEA--RKNPANPTIEL--GPEFK-KVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLK 437 (469)
Q Consensus 366 ~~~~~~~~~l~~g~--l~-~~~~--r~~~~~p~V~l--~~~~~-~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~ 437 (469)
..+..++....... .. ..|. +.....|...+ +.... .+. ...|. .+..+ ..+.|+ ++++|++|+|+
T Consensus 280 ~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~--~s~i~-~~~~i--~~~~i~-~svi~~~~~I~ 353 (425)
T PRK00725 280 WQANLDLASVTPELDLYDRNWPIWTYQEQLPPAKFVFDRSGRRGMAI--NSLVS-GGCII--SGAVVR-RSVLFSRVRVN 353 (425)
T ss_pred HHHHHHHcCCCchhhccCCCCccccCCCCCCCCeEeccCCCCcceEE--eCEEc-CCcEE--cCcccc-CCEECCCCEEC
Confidence 88877765321110 00 0000 00011222221 11100 000 11121 11111 133343 46778888888
Q ss_pred eeEEEEec-CCCceeeCCCCeeecceecCCCCC
Q 012172 438 GKVTIAAK-SGEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 438 g~~~I~~~-~~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
.+|.|+++ ....+.|+++|+|++++|+.+.+|
T Consensus 354 ~~~~i~~svi~~~~~I~~~~~i~~~ii~~~~~i 386 (425)
T PRK00725 354 SFSNVEDSVLLPDVNVGRSCRLRRCVIDRGCVI 386 (425)
T ss_pred CCCEEeeeEEcCCCEECCCCEEeeEEECCCCEE
Confidence 77777744 556688999999999998877653
No 28
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=99.79 E-value=1.6e-17 Score=171.63 Aligned_cols=320 Identities=12% Similarity=0.101 Sum_probs=185.5
Q ss_pred ceeEEEEcCCCCCcCCC---CCCccccccCCCC-chHHHHHHHHHHhhhhcCCcccEEEecCCCChH-HHHHHHHHhcCC
Q 012172 79 KLVVLKLNGGLGTTMGC---TGPKSVIEVRNGL-TFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHD-DTSKIIEKYSKS 153 (469)
Q Consensus 79 k~avviLAGG~GTRmg~---~~PK~l~~v~~gk-s~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e-~t~~~~~~~~g~ 153 (469)
++.+|+||||.||||+- +.||+|+|| .|| |+|+|+++.+.+.+-+ .+++.+++ .++ .+++||.+....
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV-~gk~PlIe~~l~~L~~~Gi~-----~I~iv~~~-~~~~~I~~~l~~~~~~ 74 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPF-GGRYRLIDFPLSNMVNAGIR-----NVFIFFKN-KERQSLFDHLGSGREW 74 (369)
T ss_pred cEEEEEECCCCCccccccccCCccccccc-CCeeeEEEEEhhhhhccCCC-----EEEEEeCC-CcHHHHHHHHhCCCCC
Confidence 57789999999999984 889999999 999 9999999999887532 34444466 454 899999652110
Q ss_pred CCc------eEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHH-cCCcEEEEEeCccccc
Q 012172 154 NVE------IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALIS-QGKEYVFAANSDNLGA 226 (469)
Q Consensus 154 ~~~------i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~-~G~~~v~v~n~DNL~~ 226 (469)
+.+ +.++.|+ ..|.|+|+++ ++... .+++. .+-++++|+|+|++..
T Consensus 75 ~~~~~~~~~~~~~~~e-----------------------~~~l~tg~~~-a~~~a---~~~l~~~~~~~~lvlnGD~l~~ 127 (369)
T TIGR02092 75 DLHRKRDGLFVFPYND-----------------------RDDLSEGGKR-YFSQN---LEFLKRSTSEYTVVLNSHMVCN 127 (369)
T ss_pred CcccccCcEEEEeccC-----------------------CCCcccChHH-HHHHH---HHHHHhCCCCEEEEECCCEEEe
Confidence 111 1122222 1246677764 22211 12233 2347899999999765
Q ss_pred cccH-HHHHHHHHcCCcceEEEeeec-cCCCcceEEE-E-eCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHH
Q 012172 227 IVDL-KILNHLIQNKNEYCMEVTPKT-LADVKGGTLI-S-YEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLK 302 (469)
Q Consensus 227 ~~dp-~~Lg~~~~~~~~~~~~v~~k~-~~~~~~G~iv-~-~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~ 302 (469)
. |. .++.++.++++++++.+.+.. .++..+|+++ . .+|++..+|..+.++.. ...|+|+|+|+.+
T Consensus 128 ~-dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~vv~~~~~g~v~~~~~~~~~~~~----------~~~~~Giyi~~~~ 196 (369)
T TIGR02092 128 I-DLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRFDESGKVKSIGQNLNPEEE----------ENISLDIYIVSTD 196 (369)
T ss_pred c-CHHHHHHHHHHcCCCEEEEEEecCHHHccccCcEEEEcCCCCEEeccccCCCCCc----------ceeeeeEEEEEHH
Confidence 4 43 566777777777766654432 1344555444 3 34555433333322111 3469999999999
Q ss_pred HHHHHHHhcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHHhhcC-cee
Q 012172 303 AIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTLADG-FVT 381 (469)
Q Consensus 303 ~L~~~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l~~g-~l~ 381 (469)
.+.+++++ .... +. ...++.++...+.- .++.++..+ ..+.-|.+..++..|+.++...... .+.
T Consensus 197 ~l~~~l~~-------~~~~----~~-~~~~~d~i~~~~~~-~~v~~~~~~-g~w~dIgt~~~l~~a~~~~l~~~~~~~~~ 262 (369)
T TIGR02092 197 LLIELLYE-------CIQR----GK-LTSLEELIRENLKE-LNINAYEYT-GYLANINSVKSYYKANMDLLDPQNFQSLF 262 (369)
T ss_pred HHHHHHHH-------Hhhc----Cc-cccHHHHHHHHhcc-CcEEEEecC-CceeEcCCHHHHHHHHHHHhCCcchhhhc
Confidence 88777764 1111 11 01112222222211 123333332 2468999999999998886643211 111
Q ss_pred -ecCCcc---CCCCCeEEECCCcccccccccccccCCcccccCceEEEee---EEECCCcEEeeeEEEEec-CCCceeeC
Q 012172 382 -RNEARK---NPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGD---VWFGANITLKGKVTIAAK-SGEKLEIP 453 (469)
Q Consensus 382 -~~~~r~---~~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~---v~fg~~V~i~g~~~I~~~-~~~~~~I~ 453 (469)
..+..+ ....|.+.+++... ++ .+++ .++++|++. +++|++++|+++|.|+++ .+..+.|+
T Consensus 263 ~~~~~~~~~~~~~~~p~~i~~~~~--------i~--~~~I-g~~~~i~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~ 331 (369)
T TIGR02092 263 YSSQGPIYTKVKDEPPTYYAENSK--------VE--NSLV-ANGCIIEGKVENSILSRGVHVGKDALIKNCIIMQRTVIG 331 (369)
T ss_pred CCCCCceeeccCCCCCcEEcCCCE--------EE--EeEE-cCCCEEeeEEeCCEECCCCEECCCCEEEeeEEeCCCEEC
Confidence 111100 01224456655433 21 1111 155666543 578888888888888744 44568889
Q ss_pred CCCeeecceecCCCC
Q 012172 454 DGAVLENKEINGPGD 468 (469)
Q Consensus 454 ~~s~le~~~v~~~~~ 468 (469)
+++.+++++|+.+.+
T Consensus 332 ~~~~i~~~ii~~~~~ 346 (369)
T TIGR02092 332 EGAHLENVIIDKDVV 346 (369)
T ss_pred CCCEEEEEEECCCCE
Confidence 999998888876643
No 29
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.79 E-value=2.7e-17 Score=174.08 Aligned_cols=226 Identities=17% Similarity=0.203 Sum_probs=145.8
Q ss_pred eEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEEE
Q 012172 81 VVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTF 160 (469)
Q Consensus 81 avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~f 160 (469)
.+||||||.||||+...||.|+|+ .|+|++++.++.+.... . + ++|.+++ ..+.+.+++.. .+.++
T Consensus 2 ~avIlA~G~gtRl~~~~pK~l~~v-~gkpli~~~l~~l~~~~-~---~--i~vv~~~-~~~~i~~~~~~------~~~~~ 67 (448)
T PRK14357 2 RALVLAAGKGTRMKSKIPKVLHKI-SGKPMINWVIDTAKKVA-Q---K--VGVVLGH-EAELVKKLLPE------WVKIF 67 (448)
T ss_pred eEEEECCCCCccCCCCCCceeeEE-CCeeHHHHHHHHHHhcC-C---c--EEEEeCC-CHHHHHHhccc------ccEEE
Confidence 479999999999998899999999 99999999999988753 1 2 4444454 44555555531 23444
Q ss_pred EecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHHHHH
Q 012172 161 NQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHLIQ 238 (469)
Q Consensus 161 ~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~~~~ 238 (469)
.|. .|.|+++.+.... +.+ . ..+++++.++|+ +....|. .++.++.+
T Consensus 68 ~~~------------------------~~~g~~~ai~~a~-----~~l-~-~~~~vlv~~gD~p~i~~~~i~~l~~~~~~ 116 (448)
T PRK14357 68 LQE------------------------EQLGTAHAVMCAR-----DFI-E-PGDDLLILYGDVPLISENTLKRLIEEHNR 116 (448)
T ss_pred ecC------------------------CCCChHHHHHHHH-----Hhc-C-cCCeEEEEeCCcccCCHHHHHHHHHHHHh
Confidence 443 1467777643322 122 1 137899999999 6655453 35666666
Q ss_pred cCCcceEEEeeeccCCCcceEEEEeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccccc
Q 012172 239 NKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEII 318 (469)
Q Consensus 239 ~~~~~~~~v~~k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~~ 318 (469)
.++++++.+++ ..++..+|.+..++|++.++|...-+... ......|+|+|+|+.+.|.+++++ +
T Consensus 117 ~~~d~ti~~~~-~~~~~~~g~v~~d~g~v~~~e~~~~~~~~-------~~~~~~~~GiYv~~~~~l~~~~~~-------~ 181 (448)
T PRK14357 117 KGADVTILVAD-LEDPTGYGRIIRDGGKYRIVEDKDAPEEE-------KKIKEINTGIYVFSGDFLLEVLPK-------I 181 (448)
T ss_pred cCCeEEEEEEE-cCCCCCcEEEEEcCCeEEEEECCCCChHH-------hcCcEEEeEEEEEEHHHHHHHHHh-------h
Confidence 67776655544 34567789877667888888876544222 223468999999999998887764 2
Q ss_pred cCCCcCCCcceehhHHHhhhHhhhcccceeEeecC-ccccccCCchhHHHHHHHHH
Q 012172 319 PNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHR-SRFLPVKATSDLLLVQSDLY 373 (469)
Q Consensus 319 ~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r-~eF~pVKn~~dL~~~~~~~~ 373 (469)
.+.... +++ .+. |++....++.++.... +++.++.++.+|..+++.+.
T Consensus 182 ~~~~~~-~~~--~~~----d~i~~~~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~ 230 (448)
T PRK14357 182 KNENAK-GEY--YLT----DAVNFAEKVRVVKTEDLLEITGVNTRIQLAWLEKQLR 230 (448)
T ss_pred CcCCCC-CeE--EHH----HHHHhhhheeEEecCCHHHEEccCCHHHHHHHHHHHH
Confidence 221111 222 222 3333333444555433 57889999999988877664
No 30
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.76 E-value=2.3e-16 Score=167.34 Aligned_cols=234 Identities=15% Similarity=0.168 Sum_probs=143.8
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
+..+||||||.||||+...||.|+|+ .|+|++++.++++.+..-. .+++.+++ ..+.+.+++.. .+.
T Consensus 2 ~~~avIlAaG~g~Rl~~~~pK~ll~i-~Gkpli~~~l~~l~~~gi~-----~iivvv~~-~~~~i~~~~~~------~~~ 68 (458)
T PRK14354 2 NRYAIILAAGKGTRMKSKLPKVLHKV-CGKPMVEHVVDSVKKAGID-----KIVTVVGH-GAEEVKEVLGD------RSE 68 (458)
T ss_pred CceEEEEeCCCCcccCCCCChhhCEe-CCccHHHHHHHHHHhCCCC-----eEEEEeCC-CHHHHHHHhcC------CcE
Confidence 45789999999999998899999999 9999999999999765311 33444455 55666666532 123
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~~ 236 (469)
+..|. .+.|+++.+.... +.+ +...+++++.++|+ +....+. .++.++
T Consensus 69 ~~~~~------------------------~~~g~~~al~~a~-----~~l-~~~~d~vlv~~~D~p~i~~~~l~~li~~~ 118 (458)
T PRK14354 69 FALQE------------------------EQLGTGHAVMQAE-----EFL-ADKEGTTLVICGDTPLITAETLKNLIDFH 118 (458)
T ss_pred EEEcC------------------------CCCCHHHHHHHHH-----HHh-cccCCeEEEEECCccccCHHHHHHHHHHH
Confidence 22221 1456766543222 222 22236899999999 6655442 344444
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEE-eCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLIS-YEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALK 314 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~-~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~ 314 (469)
...+++..+.+. ....+..+|.+.. .+|++ .++|.+...+++ ......|+|+|+|+.+.|.+.+++
T Consensus 119 ~~~~~~~t~~~~-~~~~~~~~g~v~~d~~~~V~~~~ek~~~~~~~-------~~~~~~~~Giy~f~~~~l~~~l~~---- 186 (458)
T PRK14354 119 EEHKAAATILTA-IAENPTGYGRIIRNENGEVEKIVEQKDATEEE-------KQIKEINTGTYCFDNKALFEALKK---- 186 (458)
T ss_pred HhcCCceEEEEE-EcCCCCCceEEEEcCCCCEEEEEECCCCChHH-------hcCcEEEEEEEEEEHHHHHHHHHH----
Confidence 444555544333 3345566887654 35666 577765443322 223568999999999988777754
Q ss_pred cccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecC-ccccccCCchhHHHHHHHHH
Q 012172 315 MEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHR-SRFLPVKATSDLLLVQSDLY 373 (469)
Q Consensus 315 lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r-~eF~pVKn~~dL~~~~~~~~ 373 (469)
+.+.. ..+++ .+...+...+..-.++.++.++. +....+.+..||..++..++
T Consensus 187 ---~~~~~-~~~~~--~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~ 240 (458)
T PRK14354 187 ---ISNDN-AQGEY--YLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMR 240 (458)
T ss_pred ---hCccc-cCCcE--eHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHH
Confidence 22211 11222 23344443443334566677764 57788999999988876654
No 31
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.75 E-value=3.9e-16 Score=164.76 Aligned_cols=336 Identities=13% Similarity=0.160 Sum_probs=186.0
Q ss_pred ceeEEEEcCCCCCcCCC---CCCccccccCCCC-chHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcC-C
Q 012172 79 KLVVLKLNGGLGTTMGC---TGPKSVIEVRNGL-TFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSK-S 153 (469)
Q Consensus 79 k~avviLAGG~GTRmg~---~~PK~l~~v~~gk-s~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g-~ 153 (469)
++.+|+||||.||||.. +.||.|+|+ .|+ |+++++++++...+-+ .++|.|++ ..+.++++|.+... .
T Consensus 3 ~~~AVILAaG~GtRL~PLT~~~PK~Llpi-~gk~plI~~~L~~l~~~Gi~-----~vivv~~~-~~~~i~~~l~~~~~~~ 75 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPLTKLRAKPAVPL-AGKYRLIDIPISNCINSGIN-----KIYVLTQF-NSASLNRHISQTYNFD 75 (429)
T ss_pred cEEEEEECCCCCCcchhhhcCCcceeeEE-CCeeEEeHHHHHHHHHCCCC-----EEEEEecC-CHHHHHHHHhcCcCcc
Confidence 67899999999999984 889999999 999 9999999999886422 45555565 77888899875211 0
Q ss_pred --CCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccH-
Q 012172 154 --NVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL- 230 (469)
Q Consensus 154 --~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp- 230 (469)
........+. .. .......+.|+||++.... +.+....-++++|+++|++.. .|.
T Consensus 76 ~~~~g~~~i~~~-------------~~---~~~~~~~~lGTa~al~~a~-----~~l~~~~~~~~lVl~gD~l~~-~dl~ 133 (429)
T PRK02862 76 GFSGGFVEVLAA-------------QQ---TPENPSWFQGTADAVRKYL-----WHFQEWDVDEYLILSGDQLYR-MDYR 133 (429)
T ss_pred ccCCCEEEEeCC-------------cc---cCCCCccccCcHHHHHHHH-----HHHHhcCCCEEEEecCCEEEe-CCHH
Confidence 0000000000 00 0001112379999865432 233333346899999999765 343
Q ss_pred HHHHHHHHcCCcceEEEeeec-cCCCcceEEEEe-CCee-EEEEeccCChhh-h-------hhc--cccccccEEEEEeE
Q 012172 231 KILNHLIQNKNEYCMEVTPKT-LADVKGGTLISY-EGKV-QLLEIAQVPDEH-V-------NEF--KSIEKFKIFNTNNL 297 (469)
Q Consensus 231 ~~Lg~~~~~~~~~~~~v~~k~-~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~-~-------~~~--~~~~~~~~~Nt~~~ 297 (469)
.++.++.+.++++++.+.+.. ..+..+|++..+ +|++ .++|..+-+... . ... +......+.|+|+|
T Consensus 134 ~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giy 213 (429)
T PRK02862 134 LFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIY 213 (429)
T ss_pred HHHHHHHHcCCCEEEEEEecChhhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEE
Confidence 566777777777766553322 335678988764 5676 577765422110 0 000 00112347899999
Q ss_pred EEeHHHHHHHHHhcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHH-Hhh
Q 012172 298 WVNLKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLY-TLA 376 (469)
Q Consensus 298 ~~~l~~L~~~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~-~l~ 376 (469)
+|+.+.|.+++++. .+.... ++.+++ .++.- .++.++..+ ..+.-|.+..++..+..++. ...
T Consensus 214 i~~~~vl~~~l~~~-------~~~~~~-~~dil~------~l~~~-~~v~~~~~~-g~w~digt~~~y~~an~~l~~~~~ 277 (429)
T PRK02862 214 VFSRDVLFDLLNKN-------PEYTDF-GKEIIP------EAIRD-YKVQSYLFD-GYWEDIGTIEAFYEANLALTQQPN 277 (429)
T ss_pred EEcHHHHHHHHHHC-------CChhhh-HHHHHH------HHhcc-CcEEEEEeC-CEEEeCCCHHHHHHHHHHHHcCCC
Confidence 99999998887651 000000 111221 11111 123344332 25677899999988877764 211
Q ss_pred cCceeecCCccCCCCCeEEE-CC-CcccccccccccccCCccccc----CceEEEeeEEECCCcEEeeeEEEEecCC---
Q 012172 377 DGFVTRNEARKNPANPTIEL-GP-EFKKVGNFLSRFKSIPSIIEL----DSLKVTGDVWFGANITLKGKVTIAAKSG--- 447 (469)
Q Consensus 377 ~g~l~~~~~r~~~~~p~V~l-~~-~~~~~~~~~~~i~~~p~~~~~----~~l~v~G~v~fg~~V~i~g~~~I~~~~~--- 447 (469)
...-.-.+... ....+.. .| .+. ..++. ++++.. ..+.|. ++++|++++|+.+|+|.++.-
T Consensus 278 ~~~~~~~~~~~--i~~~~~~~~~a~~~-----~~~~~--~~~ig~~~~i~~~~i~-~svi~~~~~Ig~~~~i~~svi~~~ 347 (429)
T PRK02862 278 PPFSFYDEKAP--IYTRARYLPPSKLL-----DATIT--ESIIAEGCIIKNCSIH-HSVLGIRSRIESGCTIEDTLVMGA 347 (429)
T ss_pred CcccccCCCCc--eeccCCCCCCcccc-----ccEEE--eCEECCCCEECCcEEE-EEEEeCCcEECCCCEEEeeEEecC
Confidence 11000000000 0000001 11 011 11111 111110 233443 567777777777777765432
Q ss_pred -----------------CceeeCCCCeeecceecCCCCC
Q 012172 448 -----------------EKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 448 -----------------~~~~I~~~s~le~~~v~~~~~~ 469 (469)
..+.|.++|+|++++|+.+++|
T Consensus 348 ~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i 386 (429)
T PRK02862 348 DFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARI 386 (429)
T ss_pred cccccccccccccccCCcccEECCCCEEEEEEECCCcEE
Confidence 2477999999999988887654
No 32
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=99.74 E-value=6.3e-16 Score=159.16 Aligned_cols=331 Identities=14% Similarity=0.174 Sum_probs=191.8
Q ss_pred EEEEcCCCCCcCCC---CCCccccccCCCC-chHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCC---
Q 012172 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGL-TFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSN--- 154 (469)
Q Consensus 82 vviLAGG~GTRmg~---~~PK~l~~v~~gk-s~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~--- 154 (469)
+|+||||+||||+. +.||.|+|+ .|+ |++++.++.+.+.+-+ .++|.+++ ..+.+.++|.+..+..
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv-~g~~pli~~~l~~l~~~gi~-----~i~iv~~~-~~~~i~~~~~~~~~~~~~~ 73 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPF-GGKYRIIDFPLSNCINSGIR-----RIGVLTQY-KSHSLNRHIQRGWDFDGFI 73 (361)
T ss_pred CEEeCCCCCCccchhhhCCcccccee-cceeeEeeehhhhhhhcCCc-----eEEEEecc-ChHHHHHHHHhccCccCcc
Confidence 38999999999984 689999999 999 8999999999886532 34555555 6677888887522111
Q ss_pred -CceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHH
Q 012172 155 -VEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKIL 233 (469)
Q Consensus 155 -~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~L 233 (469)
..+.++ |... .......|.|+|+...... +.+....-++++|.++|++....-..++
T Consensus 74 ~~~~~~~-~~~~----------------~~~~~~~~~Gt~~al~~a~-----~~~~~~~~~~~lv~~gD~l~~~~l~~~l 131 (361)
T TIGR02091 74 DGFVTLL-PAQQ----------------RESGTDWYQGTADAVYQNL-----DLIEDYDPEYVLILSGDHIYKMDYEKML 131 (361)
T ss_pred CCCEEEe-CCcc----------------cCCCCccccCcHHHHHHHH-----HHHHhcCCCEEEEecCCEEEcCCHHHHH
Confidence 012211 1000 0112234689988754322 2222223468999999996543212456
Q ss_pred HHHHHcCCcceEEEeee-ccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHh
Q 012172 234 NHLIQNKNEYCMEVTPK-TLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEA 310 (469)
Q Consensus 234 g~~~~~~~~~~~~v~~k-~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~ 310 (469)
..+..++++..+.+... ......+|++..+ +|++ .++|-..-+... ...+...+.|+|+|.|+.+.|.+.+++
T Consensus 132 ~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~v~~~~ekp~~~~~~----~~~~~~~~~~~Giyi~~~~~l~~~l~~ 207 (361)
T TIGR02091 132 DYHIESGADVTIACIPVPRKEASRFGVMQVDEDGRIVDFEEKPANPPSI----PGMPDFALASMGIYIFDKDVLKELLEE 207 (361)
T ss_pred HHHHHcCCCEEEEEEecChHhcccccEEEECCCCCEEEEEECCCCcccc----cccccccEEeeeEEEEcHHHHHHHHHH
Confidence 66655566655544332 2345678887764 4665 355422112111 001223468999999999998777664
Q ss_pred cccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHHhhcCc------eeecC
Q 012172 311 DALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTLADGF------VTRNE 384 (469)
Q Consensus 311 ~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l~~g~------l~~~~ 384 (469)
..+.+. +..-+. +.++..++.. .++.++.++ ..+.=|.+..++..+..++.....-. ....+
T Consensus 208 -------~~~~~~--~~~~~~-~d~l~~l~~~-~~v~~~~~~-~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 275 (361)
T TIGR02091 208 -------DADDPE--SSHDFG-KDIIPRALEE-GSVQAYLFS-GYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYT 275 (361)
T ss_pred -------HhhcCC--cccccH-HHHHHHHhhc-CceEEEeeC-CEEEECCCHHHHHHHHHHHhCCCchhhccccCCceec
Confidence 211110 000111 1222222222 244555554 45788999999999888876422110 00001
Q ss_pred CccCCCCCeEEECCCcccccccccccccCCcccccCceEEEe----eEEECCCcEEeeeEEEEec-CCCceeeCCCCeee
Q 012172 385 ARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTG----DVWFGANITLKGKVTIAAK-SGEKLEIPDGAVLE 459 (469)
Q Consensus 385 ~r~~~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G----~v~fg~~V~i~g~~~I~~~-~~~~~~I~~~s~le 459 (469)
.. ....|.+.+++... +. ...| .++++|++ ++.+|++++|+.+|+|.++ .+..+.|+++++|.
T Consensus 276 ~~-~~~~~~~~i~~~~~-i~--~~~i--------g~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~ 343 (361)
T TIGR02091 276 YN-EFLPPAKFVDSDAQ-VV--DSLV--------SEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIR 343 (361)
T ss_pred CC-CCCCCceEecCCCE-EE--CCEE--------CCCCEECCCEEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEe
Confidence 00 01235566665532 11 1123 25666666 7888899999888888744 55668899999999
Q ss_pred cceecCCCCC
Q 012172 460 NKEINGPGDL 469 (469)
Q Consensus 460 ~~~v~~~~~~ 469 (469)
+++|+.+.+|
T Consensus 344 ~~ivg~~~~i 353 (361)
T TIGR02091 344 NAIIDKNVRI 353 (361)
T ss_pred eeEECCCCEE
Confidence 9888877643
No 33
>PLN02917 CMP-KDO synthetase
Probab=99.69 E-value=1.5e-15 Score=152.40 Aligned_cols=229 Identities=10% Similarity=0.032 Sum_probs=154.9
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
.++.+||+|+|.++||+ +|.|+++ .|+||++|+++++...... +. +|+ +. ..+++.+++.++ .+
T Consensus 46 ~~i~aIIpA~G~SsR~~---~K~L~~i-~GkPLL~~vi~~a~~~~~~---~~-VVV--~~-~~e~I~~~~~~~-----~v 109 (293)
T PLN02917 46 SRVVGIIPARFASSRFE---GKPLVHI-LGKPMIQRTWERAKLATTL---DH-IVV--AT-DDERIAECCRGF-----GA 109 (293)
T ss_pred CcEEEEEecCCCCCCCC---CCCeeeE-CCEEHHHHHHHHHHcCCCC---CE-EEE--EC-ChHHHHHHHHHc-----CC
Confidence 48899999999999996 6999999 8999999999999876421 22 444 33 467787777643 23
Q ss_pred EEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHH
Q 012172 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNH 235 (469)
Q Consensus 158 ~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~ 235 (469)
.++.|.. +.+.|+|++..++ +.+ +...+++++.++|. |....+. .++..
T Consensus 110 ~vi~~~~----------------------~~~~GT~~~~~a~------~~l-~~~~d~Vlil~gD~PlI~~~tI~~li~~ 160 (293)
T PLN02917 110 DVIMTSE----------------------SCRNGTERCNEAL------KKL-EKKYDIVVNIQGDEPLIEPEIIDGVVKA 160 (293)
T ss_pred EEEeCCc----------------------ccCCchHHHHHHH------Hhc-cCCCCEEEEecCCcCCCCHHHHHHHHHH
Confidence 3333321 1256788775432 222 22357999999999 8876553 23333
Q ss_pred HHHcCCcceE--EE-eeeccCCCcceEEE--Ee-CCe-e----E-EEEeccCChhhhhhccccccccEEEEEeEEEeHHH
Q 012172 236 LIQNKNEYCM--EV-TPKTLADVKGGTLI--SY-EGK-V----Q-LLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKA 303 (469)
Q Consensus 236 ~~~~~~~~~~--~v-~~k~~~~~~~G~iv--~~-~g~-~----~-ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~ 303 (469)
+. .+.++.+ .+ .....++..||++. ++ +|+ + . |+|++|+++++ +...+.|+|+|+|+.++
T Consensus 161 ~~-~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~~~~-------~~i~~~n~Giy~f~~~~ 232 (293)
T PLN02917 161 LQ-AAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKVNP-------QFPYLLHLGIQSYDAKF 232 (293)
T ss_pred HH-hcCCceEEEEeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCccccc-------ccceEEEEEEEEeCHHH
Confidence 32 3333322 22 22556778899884 44 576 3 3 55888877665 66788999999999999
Q ss_pred HHHHHHhcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHH
Q 012172 304 IKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLY 373 (469)
Q Consensus 304 L~~~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~ 373 (469)
|. .+.+ +.+.+ .+..+.||... +++.-.++.++.++ +++.+|||+.||+.+|+.++
T Consensus 233 L~-~l~~-------l~~~n---~e~e~yLtdl~--~le~G~~i~~~~~~-~~~~GVnt~~dL~~ae~~~~ 288 (293)
T PLN02917 233 LK-IYPE-------LPPTP---LQLEEDLEQLK--VLENGYKMKVIKVD-HEAHGVDTPEDVEKIEALMR 288 (293)
T ss_pred HH-HHHc-------CCCCc---ccchhccHHHH--HHhCCCceEEEEeC-CCCCCCCCHHHHHHHHHHHH
Confidence 99 6655 65655 33455556665 45554456566665 58999999999999999875
No 34
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.68 E-value=4.8e-15 Score=146.23 Aligned_cols=187 Identities=17% Similarity=0.234 Sum_probs=136.1
Q ss_pred cceeEEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcC-C
Q 012172 78 DKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSK-S 153 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g-~ 153 (469)
+.++.+||-||-||||. .+.||++.|+ ++++|++|+++.+...+- -.+|+.|+++..+..+++.+.|.. .
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpf-gn~pmI~hqieal~nsGi-----~~I~la~~y~s~sl~~~~~k~y~~~l 81 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPF-GNKPMILHQIEALINSGI-----TKIVLATQYNSESLNRHLSKAYGKEL 81 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCccccc-CcchhhHHHHHHHHhCCC-----cEEEEEEecCcHHHHHHHHHHhhhcc
Confidence 57899999999999997 5889999999 699999999999887652 256677788444455555566642 4
Q ss_pred CCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCc-EEEEEeCccccccccHHH
Q 012172 154 NVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKE-YVFAANSDNLGAIVDLKI 232 (469)
Q Consensus 154 ~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~-~v~v~n~DNL~~~~dp~~ 232 (469)
+..|.+-.|.. |.|+.|...+.. +.+...-+ .+||+|+|-+++..--.|
T Consensus 82 gVei~~s~ete------------------------plgtaGpl~laR------~~L~~~~~~~ffVLnsDvi~~~p~~~~ 131 (371)
T KOG1322|consen 82 GVEILASTETE------------------------PLGTAGPLALAR------DFLWVFEDAPFFVLNSDVICRMPYKEM 131 (371)
T ss_pred ceEEEEEeccC------------------------CCcccchHHHHH------HHhhhcCCCcEEEecCCeeecCCHHHH
Confidence 55666555541 677777754333 22322223 799999999999866789
Q ss_pred HHHHHHcCCcceEEEeeeccCCCcceEEEEeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHH
Q 012172 233 LNHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVE 309 (469)
Q Consensus 233 Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~ 309 (469)
+.+|.++++|..+.|++-.. +.+||+++.+.+.=+|....+=|++- .-.-.|+|+|+|+.+.|.+++.
T Consensus 132 vqfH~~~gae~TI~~t~vde-pSkyGvv~~d~~~grV~~F~EKPkd~--------vsnkinaGiYi~~~~vL~ri~~ 199 (371)
T KOG1322|consen 132 VQFHRAHGAEITIVVTKVDE-PSKYGVVVIDEDTGRVIRFVEKPKDL--------VSNKINAGIYILNPEVLDRILL 199 (371)
T ss_pred HHHHHhcCCceEEEEEeccC-ccccceEEEecCCCceeEehhCchhh--------hhccccceEEEECHHHHhHhhh
Confidence 99999999999988877655 88999887754333344444444422 2234689999999999999874
No 35
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=99.66 E-value=2.3e-14 Score=151.66 Aligned_cols=262 Identities=12% Similarity=0.148 Sum_probs=149.0
Q ss_pred cceeEEEEcCCCCCcCC---CCCCccccccCCCC-chHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCC
Q 012172 78 DKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGL-TFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKS 153 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg---~~~PK~l~~v~~gk-s~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~ 153 (469)
+++.+||||||.||||. .+.||+|+|+ .|+ |+++++++.+...+-+ + +++.+++ ..+.+.++|++....
T Consensus 2 ~~~~aIIlA~G~gtRl~PlT~~~PK~llpv-~g~~plId~~L~~l~~~Gi~---~--i~iv~~~-~~~~i~~~l~~~~~~ 74 (436)
T PLN02241 2 KSVAAIILGGGAGTRLFPLTKRRAKPAVPI-GGNYRLIDIPMSNCINSGIN---K--IYVLTQF-NSASLNRHLSRAYNF 74 (436)
T ss_pred CceEEEEEeCCCCCcchhhhcCCcccceEe-CCcceEehHHHHHHHhCCCC---E--EEEEecc-CHHHHHHHHhccCCC
Confidence 46889999999999998 5889999999 876 9999999999876533 2 3444455 778888998752110
Q ss_pred CCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccH-HH
Q 012172 154 NVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-KI 232 (469)
Q Consensus 154 ~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp-~~ 232 (469)
+.... +.++ .+.+..+.........|.|+||++..... .+++...++.++++|.++|++... |. .+
T Consensus 75 ~~~~~-~~~~---------~~~i~~~~q~~~~~~~~lGt~~al~~~~~--~~~~~~~~~~~~~lv~~gD~v~~~-dl~~l 141 (436)
T PLN02241 75 GNGGN-FGDG---------FVEVLAATQTPGEKGWFQGTADAVRQFLW--LFEDAKNKNVEEVLILSGDHLYRM-DYMDF 141 (436)
T ss_pred CCCcc-cCCC---------CEEEcCCcccCCCCccccCcHHHHHHHHH--HHHhcccCCCCEEEEecCCeEEcc-CHHHH
Confidence 00000 0000 00000000000011248999998654321 111111112479999999997654 53 66
Q ss_pred HHHHHHcCCcceEEEeeec-cCCCcceEEEEe-CCee-EEEEeccCChhhhhh-----c-----cccccccEEEEEeEEE
Q 012172 233 LNHLIQNKNEYCMEVTPKT-LADVKGGTLISY-EGKV-QLLEIAQVPDEHVNE-----F-----KSIEKFKIFNTNNLWV 299 (469)
Q Consensus 233 Lg~~~~~~~~~~~~v~~k~-~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~-----~-----~~~~~~~~~Nt~~~~~ 299 (469)
+.++.++++++++.+.+.. ..+..+|++... +|++ .++|..+.+....-+ | .........|+|+|.|
T Consensus 142 l~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~ 221 (436)
T PLN02241 142 VQKHRESGADITIACLPVDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVF 221 (436)
T ss_pred HHHHHHcCCCEEEEEEecchhhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEE
Confidence 7777777887766553332 234778988764 4555 456643322100000 0 0001235789999999
Q ss_pred eHHHHHHHHHhcccccccccCCCcCCCcceehhH-HHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHH
Q 012172 300 NLKAIKRLVEADALKMEIIPNPKEVDGIKVLQLE-TAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYT 374 (469)
Q Consensus 300 ~l~~L~~~l~~~~~~lp~~~n~K~~~g~~~iqle-~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~ 374 (469)
+.+.|..++++.. + ..+ .++ -.+..++..-.++.++.++. .+.-|.+..++..+..++..
T Consensus 222 ~~~~l~~ll~~~~---~---~~~--------~~~~dil~~l~~~g~~v~~~~~~g-yw~dIg~~~~y~~a~~~~l~ 282 (436)
T PLN02241 222 KKDVLLKLLRWRF---P---TAN--------DFGSEIIPGAIKEGYNVQAYLFDG-YWEDIGTIKSFYEANLALTK 282 (436)
T ss_pred EHHHHHHHHHhhc---c---ccc--------chhHHHHHHHhhcCCeEEEEeeCC-EEEECCCHHHHHHHHHHHhc
Confidence 9999988876410 0 000 011 11111121112344444432 56778899999888888754
No 36
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=7.1e-15 Score=142.98 Aligned_cols=324 Identities=15% Similarity=0.189 Sum_probs=200.3
Q ss_pred ceeEEEEcCC--CCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCC
Q 012172 79 KLVVLKLNGG--LGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKS 153 (469)
Q Consensus 79 k~avviLAGG--~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~ 153 (469)
++..|||-|| +|||.+ ++.||+|+|+ +|.+|++|.+++..++. .+.-+++-+|+..+....|+..-.
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpi-aG~pmI~Hhi~ac~qi~-----~l~eI~LvGFy~e~~f~~fis~~~-- 73 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPI-AGVPMIHHHISACKQIS-----GLAEILLVGFYEERVFTDFISAIQ-- 73 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCcccc-CCcchhhhhHHHHhccc-----chhheeEEecccchHHHHHHHHHH--
Confidence 4667888888 799976 6899999999 99999999999998886 233344448988888888887521
Q ss_pred CCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHH
Q 012172 154 NVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKIL 233 (469)
Q Consensus 154 ~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~L 233 (469)
..++ +++. +--+.+|+|+||-..-+. ++.++..-+.+|++|.|.-+...-..+|
T Consensus 74 ---------~e~~-------~pvr-----YL~E~~plGtaGgLyhFr-----dqIl~g~ps~vFvlnaDVCcsfPl~~ml 127 (407)
T KOG1460|consen 74 ---------QEFK-------VPVR-----YLREDNPLGTAGGLYHFR-----DQILAGSPSAVFVLNADVCCSFPLQDML 127 (407)
T ss_pred ---------hhcc-------cchh-----hhccCCCCCcccceeehh-----hHHhcCCCceEEEEecceecCCcHHHHH
Confidence 1111 1221 445667999999865554 3555555679999999997666567889
Q ss_pred HHHHHcCCcceEEEeeec-cCCCcceEEEEeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHH---
Q 012172 234 NHLIQNKNEYCMEVTPKT-LADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVE--- 309 (469)
Q Consensus 234 g~~~~~~~~~~~~v~~k~-~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~--- 309 (469)
..+...+..+.|-++.-+ .....+|.++.+-..-+++-|-|=|.--+ -...|+|+|.|+.+.++.+-+
T Consensus 128 ~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~t~evlHYveKPsTfv--------Sd~InCGvYlF~~eif~~i~~v~~ 199 (407)
T KOG1460|consen 128 EAHRRYGGIGTLLVTKVSREQASNFGCLVEDPSTGEVLHYVEKPSTFV--------SDIINCGVYLFTPEIFNAIAEVYR 199 (407)
T ss_pred HHHhhcCCceEEEEEEecHhHhhccCeeeecCCcCceEEeecCcchhh--------hcccceeEEEecHHHHHHHHHHHH
Confidence 888888888877764432 34566898887533334566666553321 246799999999998765443
Q ss_pred hc------ccccccccCCCcCCC-cceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHH----HHHhhcC
Q 012172 310 AD------ALKMEIIPNPKEVDG-IKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSD----LYTLADG 378 (469)
Q Consensus 310 ~~------~~~lp~~~n~K~~~g-~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~----~~~l~~g 378 (469)
+. ..++|.+ .+| .--+.||+-+...+.-.++..+.+.++ -++-+|++--.+.|-+- ++..+.+
T Consensus 200 q~~~~~~~~~~~~~l-----~~g~~d~irLeqDvlspLag~k~lY~y~t~~-fW~QiKtagsal~as~lYLs~yk~t~p~ 273 (407)
T KOG1460|consen 200 QRQDLLEVEKDLPLL-----QPGPADFIRLEQDVLSPLAGSKQLYAYETTD-FWSQIKTAGSALYASRLYLSQYKRTHPA 273 (407)
T ss_pred HHHhhhhhhhccccc-----CCCccceEEeechhhhhhcCCCceEEEeccc-HHHHhccccceeehhhhHHHHHhhcCch
Confidence 21 0122221 113 235778887776555444444444333 25677876443222221 1222334
Q ss_pred ceeecCCccCCCCCeEEECCCcccccccccccccCCcccccCceEEEeeEEECCCcEEeeeEEEEecCC-CceeeCCCCe
Q 012172 379 FVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSG-EKLEIPDGAV 457 (469)
Q Consensus 379 ~l~~~~~r~~~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~~~~~-~~~~I~~~s~ 457 (469)
.+-..|....-+.+.|+++|..+ .. ....|.++|.+|.+|+|+.+|.|++++. +.+.|.++++
T Consensus 274 ~Lak~pgt~a~IigdVyIhPsak--------vh--------ptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enav 337 (407)
T KOG1460|consen 274 RLAKGPGTQAEIIGDVYIHPSAK--------VH--------PTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAV 337 (407)
T ss_pred hhcCCCCCCceEEeeeEEcCcce--------eC--------CccccCCCceecCCceecCCceeeeeeeccCcEeeccce
Confidence 44434322111334577887755 21 3445555666666666666666664432 3366777777
Q ss_pred eecceecCC
Q 012172 458 LENKEINGP 466 (469)
Q Consensus 458 le~~~v~~~ 466 (469)
.=+++|+=+
T Consensus 338 Vl~sIigw~ 346 (407)
T KOG1460|consen 338 VLHSIIGWK 346 (407)
T ss_pred EEeeeeccc
Confidence 777777643
No 37
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=99.62 E-value=1.5e-14 Score=140.56 Aligned_cols=236 Identities=17% Similarity=0.201 Sum_probs=156.8
Q ss_pred EEEEcCCCCCcCC---CCCCccccccCCCC-chHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 82 VLKLNGGLGTTMG---CTGPKSVIEVRNGL-TFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 82 vviLAGG~GTRmg---~~~PK~l~~v~~gk-s~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
.||||||.||||+ .+.||+|+|+ .|+ |+++++++++...+-+ ++ ++|. +.+..+.+.+++++......++
T Consensus 2 avIla~G~GtRl~plt~~~pK~ll~i-~g~~pli~~~l~~l~~~g~~---~i-i~V~-~~~~~~~i~~~~~~~~~~~~~i 75 (248)
T PF00483_consen 2 AVILAGGKGTRLRPLTDTIPKPLLPI-GGKYPLIDYVLENLANAGIK---EI-IVVV-NGYKEEQIEEHLGSGYKFGVKI 75 (248)
T ss_dssp EEEEEESCCGGGTTTTTTSSGGGSEE-TTEEEHHHHHHHHHHHTTCS---EE-EEEE-ETTTHHHHHHHHTTSGGGTEEE
T ss_pred EEEECCCCCccCchhhhcccccccee-cCCCcchhhhhhhhcccCCc---eE-EEEE-eecccccccccccccccccccc
Confidence 5789999999998 5789999999 888 9999999999987643 22 3443 4446788888887643222347
Q ss_pred EEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcC-CcEEEEEeCccccccccHHHHHHH
Q 012172 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQG-KEYVFAANSDNLGAIVDLKILNHL 236 (469)
Q Consensus 158 ~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G-~~~v~v~n~DNL~~~~dp~~Lg~~ 236 (469)
.+..|.. |.|+|+++..+.. .+.... -++++|+++|++....-..++..+
T Consensus 76 ~~i~~~~------------------------~~Gta~al~~a~~-----~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~ 126 (248)
T PF00483_consen 76 EYIVQPE------------------------PLGTAGALLQALD-----FIEEEDDDEDFLVLNGDIIFDDDLQDMLEFH 126 (248)
T ss_dssp EEEEESS------------------------SSCHHHHHHHTHH-----HHTTSEE-SEEEEETTEEEESTTHHHHHHHH
T ss_pred eeeeccc------------------------ccchhHHHHHHHH-----HhhhccccceEEEEeccccccchhhhHHHhh
Confidence 7766762 4589888654432 222221 246999999997766225778888
Q ss_pred HHcCCcceEEE-eeeccCCCcceEEEEeC-Cee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccc
Q 012172 237 IQNKNEYCMEV-TPKTLADVKGGTLISYE-GKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADAL 313 (469)
Q Consensus 237 ~~~~~~~~~~v-~~k~~~~~~~G~iv~~~-g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~ 313 (469)
.+++.++.+.+ ......+..+|++..++ |++ .++|-.+.+. ...+.|+|+|+|+-+.+..+++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~V~~~~EKP~~~~----------~~~~~~~G~Y~~~~~~~~~~~~~--- 193 (248)
T PF00483_consen 127 RESNADGTVTLLVVPVEDPSRYGVVEVDEDGRVIRIVEKPDNPN----------ASNLINTGIYIFKPEIFDFLLEM--- 193 (248)
T ss_dssp HHHSSCESEEEEEEESSGGGGSEEEEEETTSEEEEEEESCSSHS----------HSSEEEEEEEEEETHHHHHHHHH---
T ss_pred hccccccccccccccccccccceeeeeccceeEEEEeccCcccc----------cceeccCceEEEcchHHHHHhhh---
Confidence 88887654433 44456678889877754 777 4777533221 14689999999999998888642
Q ss_pred ccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCc-cccccCCchhHHHHHHHHH
Q 012172 314 KMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRS-RFLPVKATSDLLLVQSDLY 373 (469)
Q Consensus 314 ~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~-eF~pVKn~~dL~~~~~~~~ 373 (469)
..+.. .....+..++..+++.-....++..+.. .+..|.+..++..|...+.
T Consensus 194 ----~~~~~----~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~ 246 (248)
T PF00483_consen 194 ----IKENA----RGEDFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLL 246 (248)
T ss_dssp ----HHTCT----TSSHHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHH
T ss_pred ----hhccc----hhhhHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHh
Confidence 11111 1122233455555555444444455555 5999999999999887763
No 38
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=99.58 E-value=2.9e-13 Score=135.96 Aligned_cols=247 Identities=13% Similarity=0.104 Sum_probs=152.8
Q ss_pred ceeEEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCC
Q 012172 79 KLVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNV 155 (469)
Q Consensus 79 k~avviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~ 155 (469)
.+-+||||||.||||+. ..||.|+|| .||||++|.++.+...+-+ .++|.+.+...+.++++|......+.
T Consensus 3 ~~kaIILAgG~GtRL~PlT~~~pK~Llpv-~gkPmI~~~l~~l~~aGi~-----~I~ii~~~~~~~~~~~~l~~g~~~g~ 76 (292)
T PRK15480 3 TRKGIILAGGSGTRLYPVTMAVSKQLLPI-YDKPMIYYPLSTLMLAGIR-----DILIISTPQDTPRFQQLLGDGSQWGL 76 (292)
T ss_pred ceEEEEECCCcccccCcccCCCCceEeEE-CCEEHHHHHHHHHHHCCCC-----EEEEEecCCchHHHHHHHcCccccCc
Confidence 46789999999999986 789999999 9999999999999876422 23334344345566667653111122
Q ss_pred ceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccH-HHHH
Q 012172 156 EIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-KILN 234 (469)
Q Consensus 156 ~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp-~~Lg 234 (469)
++.+..|. .|.|+|+++.... .++. + +.+++.++||+....|. .++.
T Consensus 77 ~i~y~~q~------------------------~~~Gta~Al~~a~------~~i~-~-~~~~lv~gD~i~~~~~l~~ll~ 124 (292)
T PRK15480 77 NLQYKVQP------------------------SPDGLAQAFIIGE------EFIG-G-DDCALVLGDNIFYGHDLPKLME 124 (292)
T ss_pred eeEEEECC------------------------CCCCHHHHHHHHH------HHhC-C-CCEEEEECCeeeeccCHHHHHH
Confidence 45555554 2789999865322 3332 2 33666789994333353 5666
Q ss_pred HHHHcCCcceEEEeeeccCCCcceEEEEe-CCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccc
Q 012172 235 HLIQNKNEYCMEVTPKTLADVKGGTLISY-EGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADAL 313 (469)
Q Consensus 235 ~~~~~~~~~~~~v~~k~~~~~~~G~iv~~-~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~ 313 (469)
.+..++.++.+-+... .+++.+|++..+ +|++.-+|.+... ....+.|+|.|+++-+.++. +.+
T Consensus 125 ~~~~~~~~~tv~~~~v-~~p~~yGvv~~d~~g~v~~i~EKP~~----------p~s~~a~~GiY~~~~~v~~~-~~~--- 189 (292)
T PRK15480 125 AAVNKESGATVFAYHV-NDPERYGVVEFDQNGTAISLEEKPLQ----------PKSNYAVTGLYFYDNDVVEM-AKN--- 189 (292)
T ss_pred HHHhCCCCeEEEEEEc-CCcccCcEEEECCCCcEEEEEECCCC----------CCCCEEEEEEEEEChHHHHH-Hhh---
Confidence 6666666665544433 566789988764 5776433334211 22357899999999876543 332
Q ss_pred ccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCc-cccccCCchhHHHHHHHHHHhh--cCceeecCCcc
Q 012172 314 KMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRS-RFLPVKATSDLLLVQSDLYTLA--DGFVTRNEARK 387 (469)
Q Consensus 314 ~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~-eF~pVKn~~dL~~~~~~~~~l~--~g~l~~~~~r~ 387 (469)
+.. . ..|+ +.+...+...++.- ...+....|. .|.-+-+..+|..|...++.++ .|..+..|+.+
T Consensus 190 ----~~~-~-~~ge--~~itd~~~~~l~~g-~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~~~~~~~g~~~~~~e~~ 257 (292)
T PRK15480 190 ----LKP-S-ARGE--LEITDINRIYMEQG-RLSVAMMGRGYAWLDTGTHQSLIEASNFIATIEERQGLKVSCPEEI 257 (292)
T ss_pred ----cCC-C-CCCe--eEhHHHHHHHHhcC-CeEEEEecCCcEEECCCCHHHHHHHHHHHHHHHHHCCCEEEChHHH
Confidence 211 1 1133 33333333333332 1222223454 6999999999999988887544 47777777643
No 39
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.57 E-value=2.8e-13 Score=130.00 Aligned_cols=224 Identities=16% Similarity=0.180 Sum_probs=143.1
Q ss_pred EEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEEEE
Q 012172 82 VLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFN 161 (469)
Q Consensus 82 vviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~f~ 161 (469)
+|+||||.||||+...||.|+++ .|+|+++|.++++...+- -.++|.++. .++.+.+++.+ ..+.++.
T Consensus 1 aiIlaaG~g~R~~~~~pK~l~~v-~gkpli~~~i~~l~~~~i-----~~i~iv~~~-~~~~i~~~~~~-----~~~~~~~ 68 (229)
T cd02540 1 AVILAAGKGTRMKSDLPKVLHPL-AGKPMLEHVLDAARALGP-----DRIVVVVGH-GAEQVKKALAN-----PNVEFVL 68 (229)
T ss_pred CEEEeCCCCccCCCCCChhccee-CCccHHHHHHHHHHhCCC-----CeEEEEECC-CHHHHHHHhCC-----CCcEEEE
Confidence 48999999999998889999999 999999999999987642 134444455 46777666643 1344444
Q ss_pred ecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHHHHHc
Q 012172 162 QSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHLIQN 239 (469)
Q Consensus 162 Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~~~~~ 239 (469)
|.. +.|+++...... +.+ +.+.+++++.++|+ +....+. .++..+.+.
T Consensus 69 ~~~------------------------~~g~~~ai~~a~-----~~~-~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~ 118 (229)
T cd02540 69 QEE------------------------QLGTGHAVKQAL-----PAL-KDFEGDVLVLYGDVPLITPETLQRLLEAHREA 118 (229)
T ss_pred CCC------------------------CCCCHHHHHHHH-----Hhh-ccCCCeEEEEeCCccccCHHHHHHHHHHHHhc
Confidence 421 356666543221 222 22357899999999 5543332 233444444
Q ss_pred CCcceEEEeeeccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccccccc
Q 012172 240 KNEYCMEVTPKTLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEI 317 (469)
Q Consensus 240 ~~~~~~~v~~k~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~ 317 (469)
+++.++.+.+.. .+..+|.+... +|++ .+.|..+.++.+ ......|+|.++++.+.+.+.++.
T Consensus 119 ~~~~~~~~~~~~-~p~~~~~~~~~~~~~v~~~~ek~~~~~~~-------~~~~~~~~giy~~~~~~~~~~l~~------- 183 (229)
T cd02540 119 GADVTVLTAELE-DPTGYGRIIRDGNGKVLRIVEEKDATEEE-------KAIREVNAGIYAFDAEFLFEALPK------- 183 (229)
T ss_pred CCcEEEEEEEcC-CCCCccEEEEcCCCCEEEEEECCCCChHH-------HhhceEEeEEEEEEHHHHHHHHHH-------
Confidence 566655555443 45678876554 4766 577765544332 123467999999999988777754
Q ss_pred ccCCCcCCCcceehhHHHhhhHhhhcccceeEeec-CccccccCCchhH
Q 012172 318 IPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVH-RSRFLPVKATSDL 365 (469)
Q Consensus 318 ~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~-r~eF~pVKn~~dL 365 (469)
....+ ..+ .+.+..++..+++...++.++.++ -+++.+|+++.||
T Consensus 184 ~~~~~-~~~--~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 184 LTNNN-AQG--EYYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred ccccc-CCC--cEEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 22111 112 233566677677655556777776 5799999999875
No 40
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=99.56 E-value=1.2e-13 Score=139.08 Aligned_cols=232 Identities=14% Similarity=0.133 Sum_probs=143.9
Q ss_pred ceeEEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcC---
Q 012172 79 KLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSK--- 152 (469)
Q Consensus 79 k~avviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g--- 152 (469)
.+.+||||||+||||. ...||+|+|| .|||+++|+++++...+-+ .++|.+++ ..+.+.+||.....
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKpLvpV-~gkPiI~~vl~~l~~~Gi~-----~ivivv~~-~~~~i~~~~~~~~~~~~ 75 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPI-VDKPMIQYIVDEIVAAGIK-----EIVLVTHA-SKNAVENHFDTSYELES 75 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCceeeEE-CCEEHHHHHHHHHHHCCCC-----EEEEEecC-ChHHHHHHHhchHHHHH
Confidence 4678999999999999 4789999999 9999999999999987532 34555565 78889998854210
Q ss_pred -------------------CCCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCC
Q 012172 153 -------------------SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGK 213 (469)
Q Consensus 153 -------------------~~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~ 213 (469)
.+.++.+..| ..|.|+||+..... .++ +-
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~q------------------------~~~lGtg~Av~~a~------~~l--~~ 123 (297)
T TIGR01105 76 LLEQRVKRQLLAEVQSICPPGVTIMNVRQ------------------------AQPLGLGHSILCAR------PVV--GD 123 (297)
T ss_pred HHHHhcchhhhhhhhhcCCCCceEEEeeC------------------------CCcCchHHHHHHHH------HHh--CC
Confidence 0112333333 34799999854432 223 22
Q ss_pred cEEEEEeCcccccc-------ccH-HHHHHHHHcCCcceEEEeeeccCCCcceEEEEe-----CCee-EEEEeccCCh--
Q 012172 214 EYVFAANSDNLGAI-------VDL-KILNHLIQNKNEYCMEVTPKTLADVKGGTLISY-----EGKV-QLLEIAQVPD-- 277 (469)
Q Consensus 214 ~~v~v~n~DNL~~~-------~dp-~~Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~~-----~g~~-~ivEy~~~~~-- 277 (469)
+.+++.++|+|... .|. .++.++.++++.. +.+......+..||++..+ +|++ +|+|.-+=|.
T Consensus 124 ~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~~~-~~~~~~~~~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~ 202 (297)
T TIGR01105 124 NPFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRSQ-VLAKRMPGDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQP 202 (297)
T ss_pred CCEEEEECCeeccccccccchhHHHHHHHHHHHhCCcE-EEEEEcCCCCccceEEEecccccCCCCeeeEeEEEECCCCc
Confidence 55778889997642 132 4455554455544 3333433457899998862 4665 5666544331
Q ss_pred hhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCcccc
Q 012172 278 EHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFL 357 (469)
Q Consensus 278 e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~ 357 (469)
+. ....+.|+|+|+|+.+.+. .++. ..+ . +...++|..++..++.- ..+.++.++ ..+.
T Consensus 203 ~~-------~~s~~~~~GiYi~~~~i~~-~l~~-------~~~-~---~~ge~~ltd~i~~l~~~-~~v~~~~~~-g~w~ 261 (297)
T TIGR01105 203 QT-------LDSDLMAVGRYVLSADIWA-ELER-------TEP-G---AWGRIQLTDAIAELAKK-QSVDAMLMT-GDSY 261 (297)
T ss_pred cc-------CCcCEEEEEEEEECHHHHH-HHhc-------CCC-C---CCCeeeHHHHHHHHHhc-CCEEEEEec-cEEE
Confidence 11 2346899999999988665 3333 211 1 11235555555555543 234444442 3577
Q ss_pred ccCCchhHHHHHHH
Q 012172 358 PVKATSDLLLVQSD 371 (469)
Q Consensus 358 pVKn~~dL~~~~~~ 371 (469)
=|-+..++..+.-.
T Consensus 262 DiG~p~~~~~a~~~ 275 (297)
T TIGR01105 262 DCGKKMGYMQAFVK 275 (297)
T ss_pred CCCCHHHHHHHHHH
Confidence 88888888776443
No 41
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=99.50 E-value=2.5e-12 Score=126.58 Aligned_cols=240 Identities=11% Similarity=0.053 Sum_probs=143.0
Q ss_pred EEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 82 vviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
+|+||||.||||+. ..||.|+|+ .|+|++++.++.+.+.+-+ .++|.+++ ..+.+.++|.++.....++.
T Consensus 2 avilaaG~gtRl~~~t~~~pK~llpv-~g~pii~~~l~~l~~~gi~-----~i~iv~~~-~~~~i~~~~~~~~~~~~~~~ 74 (254)
T TIGR02623 2 AVILAGGLGTRISEETHLRPKPMVEI-GGKPILWHIMKIYSHHGIN-----DFIICCGY-KGYVIKEYFANYFLHMSDVT 74 (254)
T ss_pred EEEEcCccccccCccccCCCcceeEE-CCEEHHHHHHHHHHHCCCC-----EEEEEcCC-CHHHHHHHHHhhhhcccCee
Confidence 58999999999976 489999999 9999999999999876421 23344454 78888899876432111233
Q ss_pred EEEec-CcceecCCCC-cccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHH
Q 012172 159 TFNQS-QYPRLCADDF-VPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHL 236 (469)
Q Consensus 159 ~f~Q~-~~P~l~~~~~-~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~ 236 (469)
+..|. .+........ ..+. ...+..|.|+||++.... ..+ +-++++|.|+|++....--.++.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~gt~~al~~~~------~~i--~~e~flv~~gD~i~~~dl~~~~~~h 141 (254)
T TIGR02623 75 FHMADNTMEVHHKRVEPWRVT-----LVDTGESTQTGGRLKRVR------EYL--DDEAFCFTYGDGVADIDIKALIAFH 141 (254)
T ss_pred EEecccccccccccCCcccee-----eeecCCcCCcHHHHHHHH------Hhc--CCCeEEEEeCCeEecCCHHHHHHHH
Confidence 33332 1111111000 0000 011235789998864332 122 2367889999997654223566777
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEEeCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLISYEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKM 315 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~l 315 (469)
.+.+++..+..+ .++..+|++..++|++ .++|. ..+ .....|+|+|.++.+.+ +.++.
T Consensus 142 ~~~~~d~tl~~~---~~~~~yG~v~~d~~~V~~~~Ek-p~~-----------~~~~i~~Giyi~~~~il-~~l~~----- 200 (254)
T TIGR02623 142 RKHGKKATVTAV---QPPGRFGALDLEGEQVTSFQEK-PLG-----------DGGWINGGFFVLNPSVL-DLIDG----- 200 (254)
T ss_pred HHcCCCEEEEEe---cCCCcccEEEECCCeEEEEEeC-CCC-----------CCCeEEEEEEEEcHHHH-hhccc-----
Confidence 777777765443 3457789987766766 46662 211 12468999999998876 44432
Q ss_pred ccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHHh
Q 012172 316 EIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYTL 375 (469)
Q Consensus 316 p~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~l 375 (469)
.+ . . ....++...++.. ++.+++.+ ..+..|.+..++..++..++.-
T Consensus 201 -----~~-~---~--~~~d~i~~l~~~~-~v~~~~~~-g~w~dIgt~~~~~~~~~~~~~~ 247 (254)
T TIGR02623 201 -----DA-T---V--WEQEPLETLAQRG-ELSAYEHS-GFWQPMDTLRDKNYLEELWESG 247 (254)
T ss_pred -----cC-c---h--hhhhHHHHHHhCC-CEEEEeCC-CEEecCCchHHHHHHHHHHHcC
Confidence 01 0 0 0012222233221 23344432 3689999999998888777543
No 42
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=99.49 E-value=8.6e-12 Score=120.47 Aligned_cols=230 Identities=17% Similarity=0.173 Sum_probs=142.0
Q ss_pred eeEEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCc
Q 012172 80 LVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVE 156 (469)
Q Consensus 80 ~avviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~ 156 (469)
+.+||||||.||||+ ...||.|+|+ .|+|++++.++.+.+.+-+ .+++.+++ ..+.+.++++++...+.+
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i-~g~~li~~~l~~l~~~~~~-----~i~vv~~~-~~~~~~~~~~~~~~~~~~ 73 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPV-AGKPIIQYAIEDLREAGIE-----DIGIVVGP-TGEEIKEALGDGSRFGVR 73 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEE-CCcchHHHHHHHHHHCCCC-----EEEEEcCC-CHHHHHHHhcchhhcCCe
Confidence 357999999999997 4789999999 9999999999999875322 34555566 778888888653211223
Q ss_pred eEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHH
Q 012172 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHL 236 (469)
Q Consensus 157 i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~ 236 (469)
+.+..|. .|.|+|+.+.... .++. .+.+++.++|++....--.++..+
T Consensus 74 i~~~~~~------------------------~~~g~~~sl~~a~------~~i~--~~~~li~~~D~~~~~~~~~~~~~~ 121 (236)
T cd04189 74 ITYILQE------------------------EPLGLAHAVLAAR------DFLG--DEPFVVYLGDNLIQEGISPLVRDF 121 (236)
T ss_pred EEEEECC------------------------CCCChHHHHHHHH------HhcC--CCCEEEEECCeecCcCHHHHHHHH
Confidence 4443332 2467777643221 1222 245677899996543223455566
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEEeCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLISYEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKM 315 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~l 315 (469)
...+.++++.+.+. .++..+|++..++|++ .++|. |.. ......|+|+++|+.+.++.+ ..
T Consensus 122 ~~~~~~~~~~~~~~-~~~~~~g~~~~d~~~v~~~~ek---~~~--------~~~~~~~~Giy~~~~~~~~~l-~~----- 183 (236)
T cd04189 122 LEEDADASILLAEV-EDPRRFGVAVVDDGRIVRLVEK---PKE--------PPSNLALVGVYAFTPAIFDAI-SR----- 183 (236)
T ss_pred HhcCCceEEEEEEC-CCcccceEEEEcCCeEEEEEEC---CCC--------CCCCEEEEEEEEeCHHHHHHH-Hh-----
Confidence 66677776666543 3456788776666644 34443 211 113568999999998777543 22
Q ss_pred ccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHH
Q 012172 316 EIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLY 373 (469)
Q Consensus 316 p~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~ 373 (469)
.. +. ..++ +.++.++..++..-.++.+++++ ..+..|.+..|+..++..+.
T Consensus 184 --~~-~~-~~~~--~~~~d~~~~~i~~g~~v~~~~~~-~~~~~i~t~~dl~~a~~~~l 234 (236)
T cd04189 184 --LK-PS-WRGE--LEITDAIQWLIDRGRRVGYSIVT-GWWKDTGTPEDLLEANRLLL 234 (236)
T ss_pred --cC-CC-CCCe--EEHHHHHHHHHHcCCcEEEEEcC-ceEEeCCCHHHHHHHHHHHH
Confidence 11 11 1133 23345555555443345555554 24799999999998887653
No 43
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=99.48 E-value=7.3e-12 Score=125.52 Aligned_cols=242 Identities=12% Similarity=0.085 Sum_probs=149.5
Q ss_pred EEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 82 vviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
+||||||.||||.. ..||.|+|| .||||+++.++.+...+-+ .++|.+.++..+.++++|......+.++.
T Consensus 2 aIILAgG~GtRL~plT~~~pK~Llpv-~gkPmI~~~L~~l~~aGi~-----~I~iv~~~~~~~~~~~~lg~g~~~g~~i~ 75 (286)
T TIGR01207 2 GIILAGGSGTRLYPITRAVSKQLLPI-YDKPMIYYPLSTLMLAGIR-----DILIISTPQDTPRFQQLLGDGSQWGVNLS 75 (286)
T ss_pred EEEECCCCCccCCcccCCCCceeeEE-CCEEhHHHHHHHHHHCCCC-----EEEEEecCCcHHHHHHHhccccccCceEE
Confidence 58999999999986 789999999 9999999999999876422 34444455455667777753111123455
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcccccccc-HHHHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVD-LKILNHLI 237 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~d-p~~Lg~~~ 237 (469)
+..|. .|.|+|+++.... .++. .+.+++.++||+....| ..++..+.
T Consensus 76 ~~~q~------------------------~~~Gta~al~~a~------~~l~--~~~~~li~gD~i~~~~~l~~ll~~~~ 123 (286)
T TIGR01207 76 YAVQP------------------------SPDGLAQAFIIGE------DFIG--GDPSALVLGDNIFYGHDLSDLLKRAA 123 (286)
T ss_pred EEEcc------------------------CCCCHHHHHHHHH------HHhC--CCCEEEEECCEeccccCHHHHHHHHH
Confidence 55553 3689999864432 2332 24456668999333345 35566666
Q ss_pred HcCCcceEEEeeeccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccccc
Q 012172 238 QNKNEYCMEVTPKTLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKM 315 (469)
Q Consensus 238 ~~~~~~~~~v~~k~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~l 315 (469)
+.+++..+-+.+. .+++.||++..+ +|++ .++|...- ....+.|+|.|+++.+.+ +++.+
T Consensus 124 ~~~~~~ti~~~~v-~~p~~yGvv~~d~~g~V~~i~EKp~~-----------~~s~~~~~GiYi~~~~i~-~~l~~----- 185 (286)
T TIGR01207 124 ARESGATVFAYQV-SDPERYGVVEFDSNGRAISIEEKPAQ-----------PKSNYAVTGLYFYDNRVV-EIARQ----- 185 (286)
T ss_pred hcCCCcEEEEEEc-cCHHHCceEEECCCCeEEEEEECCCC-----------CCCCEEEEEEEEEchHHH-HHHhh-----
Confidence 6666665544443 456789988764 6776 45553211 123578999999998864 44433
Q ss_pred ccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCc-cccccCCchhHHHHHHHHHHhhc--CceeecCCc
Q 012172 316 EIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRS-RFLPVKATSDLLLVQSDLYTLAD--GFVTRNEAR 386 (469)
Q Consensus 316 p~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~-eF~pVKn~~dL~~~~~~~~~l~~--g~l~~~~~r 386 (469)
+.. . ..++. .+...+...++.- ...+....+- .|.=+.+..++..+.+.++.+++ |.....|+.
T Consensus 186 --~~~-~-~~ge~--eitdv~~~~l~~g-~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~~~~~~~~~~~~~~~~ 252 (286)
T TIGR01207 186 --LKP-S-ARGEL--EITDLNRVYLEEG-RLSVELLGRGYAWLDTGTHDSLLEASNFIQTIEKRQGLKVACPEE 252 (286)
T ss_pred --cCC-C-CCCcE--eHHHHHHHHHHcC-CcEEEEecCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCEEecHHH
Confidence 211 1 11332 3334444334331 1222233344 48999999999999888886554 556666653
No 44
>PRK10122 GalU regulator GalF; Provisional
Probab=99.48 E-value=7.8e-12 Score=125.94 Aligned_cols=236 Identities=14% Similarity=0.130 Sum_probs=143.6
Q ss_pred cceeEEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcC--
Q 012172 78 DKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSK-- 152 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g-- 152 (469)
.++.+||||||+||||+ ...||.|+|| .|||+++++++.+...+-+ .++|.+++ ..+.+.+||.....
T Consensus 2 ~~mkavIlAaG~GtRl~PlT~~~PK~llpi-~gkpiI~~~l~~l~~~Gi~-----~i~iv~~~-~~~~i~~~~~~~~~l~ 74 (297)
T PRK10122 2 TNLKAVIPVAGLGMHMLPATKAIPKEMLPI-VDKPMIQYIVDEIVAAGIK-----EIVLVTHA-SKNAVENHFDTSYELE 74 (297)
T ss_pred CceEEEEECCcCCcccCcccCCCCceeeEE-CCEEHHHHHHHHHHHCCCC-----EEEEEcCC-ChHHHHHHHhcchhHH
Confidence 36789999999999998 4789999999 9999999999999887532 34555555 77888888852110
Q ss_pred --------------------CCCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcC
Q 012172 153 --------------------SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQG 212 (469)
Q Consensus 153 --------------------~~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G 212 (469)
.+.++.+..|. .|.|+|+++.... .++ +
T Consensus 75 ~~~~~~~k~~~l~~~~~~~~~~~~i~~~~q~------------------------~~lGtg~al~~a~------~~l--~ 122 (297)
T PRK10122 75 SLLEQRVKRQLLAEVQSICPPGVTIMNVRQG------------------------QPLGLGHSILCAR------PAI--G 122 (297)
T ss_pred HHHhhcchhhhHHhhhhccCCCceEEEeecC------------------------CcCchHHHHHHHH------HHc--C
Confidence 01123333332 3789999864432 222 2
Q ss_pred CcEEEEEeCcccccc-------ccH-HHHHHHHHcCCcceEEEeeeccCCCcceEEEEe-----CCee-EEEEeccCChh
Q 012172 213 KEYVFAANSDNLGAI-------VDL-KILNHLIQNKNEYCMEVTPKTLADVKGGTLISY-----EGKV-QLLEIAQVPDE 278 (469)
Q Consensus 213 ~~~v~v~n~DNL~~~-------~dp-~~Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~~-----~g~~-~ivEy~~~~~e 278 (469)
-+..+|.++|++... .|. .++.++.+.+++. +.+......+..||++... +|.+ +|++..+=|..
T Consensus 123 ~~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~~~~~-~~~~~~~~~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~ 201 (297)
T PRK10122 123 DNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRSQ-VLAKRMPGDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQ 201 (297)
T ss_pred CCCEEEEECCeeccCccccccchhHHHHHHHHHHhCCcE-EEEEECCCCCCCceEEEecCcccCCCCeeeEEEEEECCCC
Confidence 244667779997642 232 4566666666663 3333333467789988763 4544 45554433321
Q ss_pred hhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccc
Q 012172 279 HVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLP 358 (469)
Q Consensus 279 ~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~p 358 (469)
... ......|+|+|.|+.+.+..+.+ ..+. +...++|..++...+.- .++.++.++ ..|.-
T Consensus 202 ~~~-----~~s~~~~~GiYi~~~~i~~~l~~--------~~~~----~~~e~~ltd~i~~l~~~-~~v~~~~~~-G~w~D 262 (297)
T PRK10122 202 PQT-----LDSDLMAVGRYVLSADIWPELER--------TEPG----AWGRIQLTDAIAELAKK-QSVDAMLMT-GDSYD 262 (297)
T ss_pred ccc-----CCccEEEEEEEEECHHHHHHHHh--------CCCC----CCCeeeHHHHHHHHHhC-CCEEEEEeC-CEEEc
Confidence 100 12357899999999887665422 1110 11234455555444433 234444433 35788
Q ss_pred cCCchhHHHHHHHH
Q 012172 359 VKATSDLLLVQSDL 372 (469)
Q Consensus 359 VKn~~dL~~~~~~~ 372 (469)
|=+..++..+.-.+
T Consensus 263 iG~p~~~~~a~~~~ 276 (297)
T PRK10122 263 CGKKMGYMQAFVKY 276 (297)
T ss_pred CCCHHHHHHHHHHH
Confidence 88888887776554
No 45
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=99.47 E-value=9.2e-12 Score=120.97 Aligned_cols=231 Identities=16% Similarity=0.090 Sum_probs=139.8
Q ss_pred eEEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 81 VVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 81 avviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
.+||||||.||||+. ..||.|+|+ .|+|++++.++.+...+-+ .+++.++....+.+.+++......+.++
T Consensus 2 ~~iIlAaG~gtRl~plt~~~pK~llpv-~~~pli~~~l~~l~~~gi~-----~i~vv~~~~~~~~~~~~l~~~~~~~~~i 75 (240)
T cd02538 2 KGIILAGGSGTRLYPLTKVVSKQLLPV-YDKPMIYYPLSTLMLAGIR-----EILIISTPEDLPLFKELLGDGSDLGIRI 75 (240)
T ss_pred eEEEEcCcCcccCCccccCCCceeeEE-CCEEhHHHHHHHHHHCCCC-----EEEEEeCcchHHHHHHHHhcccccCceE
Confidence 479999999999986 789999999 8999999999999875422 3445455544567777775421111223
Q ss_pred EEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccH-HHHHHH
Q 012172 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-KILNHL 236 (469)
Q Consensus 158 ~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp-~~Lg~~ 236 (469)
.+..| ..|.|+|+.+.... .++. -+.++|.++|++....|. .++-++
T Consensus 76 ~~~~~------------------------~~~~G~~~al~~a~------~~~~--~~~~lv~~gD~~~~~~~~~~~~~~~ 123 (240)
T cd02538 76 TYAVQ------------------------PKPGGLAQAFIIGE------EFIG--DDPVCLILGDNIFYGQGLSPILQRA 123 (240)
T ss_pred EEeeC------------------------CCCCCHHHHHHHHH------HhcC--CCCEEEEECCEEEccHHHHHHHHHH
Confidence 32222 12578887753222 1222 256788899994332332 455556
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALK 314 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~ 314 (469)
.+++.++.+.+.+. .++..+|++..+ +|++ .++|- |.. ......|+|+|+|+.+.+ +.++.
T Consensus 124 ~~~~~~~~~~~~~~-~~~~~~g~v~~d~~g~v~~~~ek---p~~--------~~~~~~~~Giyi~~~~~l-~~l~~---- 186 (240)
T cd02538 124 AAQKEGATVFGYEV-NDPERYGVVEFDENGRVLSIEEK---PKK--------PKSNYAVTGLYFYDNDVF-EIAKQ---- 186 (240)
T ss_pred HhcCCCcEEEEEEC-CchhcCceEEecCCCcEEEEEEC---CCC--------CCCCeEEEEEEEECHHHH-HHHHh----
Confidence 55667766554433 445678987664 5666 35553 211 123468999999999876 45543
Q ss_pred cccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecC-ccccccCCchhHHHHHHHHHH
Q 012172 315 MEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHR-SRFLPVKATSDLLLVQSDLYT 374 (469)
Q Consensus 315 lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r-~eF~pVKn~~dL~~~~~~~~~ 374 (469)
..+.. .++ +.+..++..++..- ...+..++. ..+.-|.+..++..+.+.++.
T Consensus 187 ---~~~~~--~~~--~~l~d~~~~l~~~g-~~~~~~~~~~g~w~digt~~~~~~a~~~~~~ 239 (240)
T cd02538 187 ---LKPSA--RGE--LEITDVNNEYLEKG-KLSVELLGRGFAWLDTGTHESLLEASNFVQT 239 (240)
T ss_pred ---cCCCC--CCe--EEhHHHHHHHHHhC-CeEEEEeCCCcEEEeCCCHHHHHHHHHHHhh
Confidence 21111 122 23333444333332 233344454 478999999999998887653
No 46
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.47 E-value=5.7e-12 Score=120.29 Aligned_cols=215 Identities=16% Similarity=0.197 Sum_probs=134.0
Q ss_pred EEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 82 VLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 82 vviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
+|+||||.||||+ ...||.|+|+ .|+|++++.++++...+-+ .+++.+++ ..+.+++++.+....+.++.
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~-~g~pli~~~l~~l~~~~~~-----~iivv~~~-~~~~i~~~~~~~~~~~~~i~ 73 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKV-GGKPILETIIDRFIAQGFR-----NFYISVNY-LAEMIEDYFGDGSKFGVNIS 73 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeE-CCcchHHHHHHHHHHCCCc-----EEEEECcc-CHHHHHHHHCCccccCccEE
Confidence 5899999999997 3689999999 9999999999999886422 33444455 56677777754211112333
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQ 238 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~~~ 238 (469)
+..|. .|.|+|+.+..+. +...+.++|+++|++....--.++..+..
T Consensus 74 ~~~~~------------------------~~~g~~~~l~~~~---------~~~~~~~lv~~~D~i~~~~~~~l~~~~~~ 120 (220)
T cd06426 74 YVRED------------------------KPLGTAGALSLLP---------EKPTDPFLVMNGDILTNLNYEHLLDFHKE 120 (220)
T ss_pred EEECC------------------------CCCcchHHHHHHH---------hhCCCCEEEEcCCEeeccCHHHHHHHHHh
Confidence 33322 2567777753222 22247899999998554322345666666
Q ss_pred cCCcceEEEeeeccCCCcceEEEEeCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccccccc
Q 012172 239 NKNEYCMEVTPKTLADVKGGTLISYEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEI 317 (469)
Q Consensus 239 ~~~~~~~~v~~k~~~~~~~G~iv~~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~ 317 (469)
.+.+.++.+.. ..+...+|.+..++|++ .+.|. + ......|+|+++|+.+.+..+ .
T Consensus 121 ~~~~~~~~~~~-~~~~~~~g~~~~d~~~v~~~~ek---~----------~~~~~~~~Giy~~~~~~~~~i-~-------- 177 (220)
T cd06426 121 NNADATVCVRE-YEVQVPYGVVETEGGRITSIEEK---P----------THSFLVNAGIYVLEPEVLDLI-P-------- 177 (220)
T ss_pred cCCCEEEEEEE-cCCCCcceEEEECCCEEEEEEEC---C----------CCCCeEEEEEEEEcHHHHhhc-C--------
Confidence 66666655544 34556678765555655 34442 1 112467999999999876532 1
Q ss_pred ccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHH
Q 012172 318 IPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLV 368 (469)
Q Consensus 318 ~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~ 368 (469)
+ ++ .+.+..++..++..-.++.+++.+ ..+..|.+.+||..|
T Consensus 178 --~-----~~-~~~l~~~~~~~i~~~~~i~~~~~~-~~w~~igt~~dl~~a 219 (220)
T cd06426 178 --K-----NE-FFDMPDLIEKLIKEGKKVGVFPIH-EYWLDIGRPEDYEKA 219 (220)
T ss_pred --C-----CC-CcCHHHHHHHHHHCCCcEEEEEeC-CeEEeCCCHHHHHhh
Confidence 0 11 122344555555543445556655 579999999998765
No 47
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=99.43 E-value=6e-12 Score=123.71 Aligned_cols=177 Identities=17% Similarity=0.195 Sum_probs=118.1
Q ss_pred EEEEcCC--CCCcCCC---CCCccccccCCCCchHHHHHHHHHHh-hhhcCCcccEEEecCCCChHHHHHHHHHhc-CCC
Q 012172 82 VLKLNGG--LGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENL-NAKYGCNVPLLLMNSFNTHDDTSKIIEKYS-KSN 154 (469)
Q Consensus 82 vviLAGG--~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l-~~~~~~~iplviMtS~~t~e~t~~~~~~~~-g~~ 154 (469)
+|||||| .||||+. ..||+|+|+ .|+|+++++++.+..+ +-+ .++|.+++ ..+.+.+++.+.. ..+
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv-~g~plI~~~l~~l~~~~gi~-----~i~iv~~~-~~~~i~~~l~~~~~~~~ 73 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPV-AGKPMIHHHIEACAKVPDLK-----EVLLIGFY-PESVFSDFISDAQQEFN 73 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeE-CCeeHHHHHHHHHHhcCCCc-----EEEEEecC-CHHHHHHHHHhcccccC
Confidence 4799999 8999997 789999999 9999999999999875 322 23444444 6788888887532 112
Q ss_pred CceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHc-CCcEEEEEeCcccccccc-HHH
Q 012172 155 VEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQ-GKEYVFAANSDNLGAIVD-LKI 232 (469)
Q Consensus 155 ~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~-G~~~v~v~n~DNL~~~~d-p~~ 232 (469)
..+.+..|. .|.|+|+.+.... .++.. .-++++|.++|++... | -.+
T Consensus 74 ~~i~~~~~~------------------------~~~Gt~~al~~a~------~~l~~~~~~~~lv~~gD~~~~~-dl~~~ 122 (257)
T cd06428 74 VPIRYLQEY------------------------KPLGTAGGLYHFR------DQILAGNPSAFFVLNADVCCDF-PLQEL 122 (257)
T ss_pred ceEEEecCC------------------------ccCCcHHHHHHHH------HHhhccCCCCEEEEcCCeecCC-CHHHH
Confidence 223332221 2578888754322 23332 3468999999997654 4 366
Q ss_pred HHHHHHcCCcceEEEeeec-cCCCcceEEEEe--CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHH
Q 012172 233 LNHLIQNKNEYCMEVTPKT-LADVKGGTLISY--EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRL 307 (469)
Q Consensus 233 Lg~~~~~~~~~~~~v~~k~-~~~~~~G~iv~~--~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~ 307 (469)
+.++.++++++++.+.+.. ..+..+|++... +|++ .++|..+ . ..-...|+|+|+|+.+.+..+
T Consensus 123 ~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g~v~~~~Ekp~----~-------~~~~~~~~Giyi~~~~~~~~i 190 (257)
T cd06428 123 LEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEVLHYVEKPE----T-------FVSDLINCGVYLFSPEIFDTI 190 (257)
T ss_pred HHHHHHcCCCEEEEEEEccccccccccEEEEeCCCCeEEEEEeCCC----C-------cccceEEEEEEEECHHHHHHH
Confidence 7778777888766554322 346678987654 4676 5777422 1 122478999999999987544
No 48
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=99.41 E-value=2.7e-11 Score=117.19 Aligned_cols=223 Identities=18% Similarity=0.199 Sum_probs=137.5
Q ss_pred eEEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcC-CCCc
Q 012172 81 VVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSK-SNVE 156 (469)
Q Consensus 81 avviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g-~~~~ 156 (469)
-+||||||.||||+. ..||.|+|+ .|+|++++.++++...+-+ .++|.|++ .++.+.+++.++.. .+..
T Consensus 2 ~~iIlAaG~g~R~~~lt~~~pK~llpv-~g~pli~~~l~~l~~~g~~-----~v~iv~~~-~~~~~~~~l~~~~~~~~~~ 74 (233)
T cd06425 2 KALILVGGYGTRLRPLTLTVPKPLVEF-CNKPMIEHQIEALAKAGVK-----EIILAVNY-RPEDMVPFLKEYEKKLGIK 74 (233)
T ss_pred cEEEecCCCccccCccccCCCCccCeE-CCcchHHHHHHHHHHCCCc-----EEEEEeee-CHHHHHHHHhcccccCCeE
Confidence 368999999999975 689999999 8999999999999886422 34555555 67788888875311 1111
Q ss_pred eEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHH
Q 012172 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHL 236 (469)
Q Consensus 157 i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~ 236 (469)
+.+.. +..|.|+|+.+.... ..+....+-++|.++|++....-..++.++
T Consensus 75 i~~~~------------------------~~~~~G~~~al~~a~------~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~ 124 (233)
T cd06425 75 ITFSI------------------------ETEPLGTAGPLALAR------DLLGDDDEPFFVLNSDVICDFPLAELLDFH 124 (233)
T ss_pred EEecc------------------------CCCCCccHHHHHHHH------HHhccCCCCEEEEeCCEeeCCCHHHHHHHH
Confidence 22111 123678887754322 222222244788899996553224678888
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEEe--CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLISY--EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADAL 313 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~~--~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~ 313 (469)
..++++.++.+.+. .++..+|.+..+ +|++ .++|. |.+. .-.+.|+|+|+|+.+.++.+...
T Consensus 125 ~~~~~~~~~~~~~~-~~~~~~g~v~~d~~~~~v~~~~ek---p~~~--------~~~~~~~Giyi~~~~~l~~l~~~--- 189 (233)
T cd06425 125 KKHGAEGTILVTKV-EDPSKYGVVVHDENTGRIERFVEK---PKVF--------VGNKINAGIYILNPSVLDRIPLR--- 189 (233)
T ss_pred HHcCCCEEEEEEEc-CCccccCeEEEcCCCCEEEEEEEC---CCCC--------CCCEEEEEEEEECHHHHHhcccC---
Confidence 88888877766644 456788987654 3555 34443 2211 12468999999999988654221
Q ss_pred ccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHH
Q 012172 314 KMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSD 371 (469)
Q Consensus 314 ~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~ 371 (469)
. .+.+. .++...... .++.+++.+ ..+.-|.+..++..+.+.
T Consensus 190 --------~-~~~~~-----~~~~~l~~~-~~v~~~~~~-g~w~digt~~~~~~a~~~ 231 (233)
T cd06425 190 --------P-TSIEK-----EIFPKMASE-GQLYAYELP-GFWMDIGQPKDFLKGMSL 231 (233)
T ss_pred --------c-ccchh-----hhHHHHHhc-CCEEEEeeC-CEEEcCCCHHHHHHHHHH
Confidence 0 10000 111112222 234444442 368889999998887654
No 49
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.38 E-value=4.3e-11 Score=116.47 Aligned_cols=235 Identities=13% Similarity=0.104 Sum_probs=138.3
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
++++|+||||.|+||+ ||.|+++ .|+|+|+|+++++...+- -.+++-| . ++.+.+++.++ + ..+.
T Consensus 2 ~~~~iIlA~g~S~R~~---~K~Ll~i-~Gkpll~~~l~~l~~~~i-----~~ivvv~-~--~~~i~~~~~~~-~--~~v~ 66 (245)
T PRK05450 2 KFLIIIPARYASTRLP---GKPLADI-GGKPMIVRVYERASKAGA-----DRVVVAT-D--DERIADAVEAF-G--GEVV 66 (245)
T ss_pred ceEEEEecCCCCCCCC---CCccccc-CCcCHHHHHHHHHHhcCC-----CeEEEEC-C--cHHHHHHHHHc-C--CEEE
Confidence 6789999999999995 7999999 999999999999987631 1233432 2 46777777542 1 1222
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~~ 236 (469)
+..|. .+.|++++..++ ..+...+.++++++++|+ +....+. .++..+
T Consensus 67 ~~~~~------------------------~~~gt~~~~~~~------~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~ 116 (245)
T PRK05450 67 MTSPD------------------------HPSGTDRIAEAA------AKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPL 116 (245)
T ss_pred ECCCc------------------------CCCchHHHHHHH------HhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHH
Confidence 11111 245666654322 122111346899999999 7765443 344444
Q ss_pred HHcCCcceEEEeeec-----cCCCcceEEEEeCCeeE-EEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHh
Q 012172 237 IQNKNEYCMEVTPKT-----LADVKGGTLISYEGKVQ-LLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEA 310 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~-----~~~~~~G~iv~~~g~~~-ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~ 310 (469)
..++.++.+-+++.. ..++.+|++...+|++. +.|.-..++.+.... ........|+|+|+|+.+.++.+.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~g~v~~~~e~~~~~~~~~~~~-~~~~~~~~~~Giy~~~~~~l~~~~~~ 195 (245)
T PRK05450 117 ANPEADMATLAVPIHDAEEAFNPNVVKVVLDADGRALYFSRAPIPYGRDAFAD-SAPTPVYRHIGIYAYRRGFLRRFVSL 195 (245)
T ss_pred hcCCCCeEeeeeecCCHHHhcCcCCCEEEeCCCCcEEEecCCCCCCCCCcccc-ccCccccEEEEEEecCHHHHHHHHhC
Confidence 444566655554442 34555676654567763 555432221110000 01335678999999999999887652
Q ss_pred cccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHH
Q 012172 311 DALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDL 372 (469)
Q Consensus 311 ~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~ 372 (469)
..+. ....-.++++ .++..-.++.++.++...+..|++..||..|++.+
T Consensus 196 -------~~~~--~~~~~~~~~~----~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 196 -------PPSP--LEKIESLEQL----RALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred -------CCCc--cccchhHHHH----HHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 1000 0000111112 12333234566666667899999999999998653
No 50
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.38 E-value=4.6e-11 Score=113.65 Aligned_cols=216 Identities=17% Similarity=0.230 Sum_probs=129.3
Q ss_pred EEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 82 vviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
+||||||+||||+. ..||.|+++ .|+|+++++++++.+..- + .+++.|++ ..+.+.+++......+..+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i-~g~pli~~~l~~l~~~g~----~-~v~vv~~~-~~~~i~~~~~~~~~~~~~~~ 73 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPV-AGRPFLEYLLEYLARQGI----S-RIVLSVGY-LAEQIEEYFGDGYRGGIRIY 73 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEE-CCcchHHHHHHHHHHCCC----C-EEEEEccc-CHHHHHHHHcCccccCceEE
Confidence 48999999999985 579999999 899999999999987531 1 34555554 56777777764211011222
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccH-HHHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-KILNHLI 237 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp-~~Lg~~~ 237 (469)
+..| ..+.|+++.+.... +.+ .-++++++++|++.. .|. .++-.+.
T Consensus 74 ~~~~------------------------~~~~G~~~~l~~a~-----~~~---~~~~~lv~~~D~~~~-~~~~~~l~~~~ 120 (223)
T cd06915 74 YVIE------------------------PEPLGTGGAIKNAL-----PKL---PEDQFLVLNGDTYFD-VDLLALLAALR 120 (223)
T ss_pred EEEC------------------------CCCCcchHHHHHHH-----hhc---CCCCEEEEECCcccC-CCHHHHHHHHH
Confidence 2121 12467776532211 122 347899999999543 232 4455555
Q ss_pred HcCCcceEEEeeeccCCCcceEEEE-eCCeeE-EEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccccc
Q 012172 238 QNKNEYCMEVTPKTLADVKGGTLIS-YEGKVQ-LLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKM 315 (469)
Q Consensus 238 ~~~~~~~~~v~~k~~~~~~~G~iv~-~~g~~~-ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~l 315 (469)
+.+.+.++.+.+.. ....+|.+.. .+|++. +.|- +.. ......|+|+++|+.+.+..+...
T Consensus 121 ~~~~~~~~~~~~~~-~~~~~~~v~~d~~~~v~~~~ek---~~~--------~~~~~~~~Giy~~~~~~l~~~~~~----- 183 (223)
T cd06915 121 ASGADATMALRRVP-DASRYGNVTVDGDGRVIAFVEK---GPG--------AAPGLINGGVYLLRKEILAEIPAD----- 183 (223)
T ss_pred hCCCcEEEEEEECC-CCCcceeEEECCCCeEEEEEeC---CCC--------CCCCcEEEEEEEECHHHHhhCCcc-----
Confidence 56677776665543 3456776544 345653 4442 111 113467999999999988654211
Q ss_pred ccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHH
Q 012172 316 EIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLV 368 (469)
Q Consensus 316 p~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~ 368 (469)
+ . . .+..++..++... ++.+++++ ..+..|.+.+|+..|
T Consensus 184 ------~-~---~--~~~~~~~~l~~~~-~v~~~~~~-~~~~dI~t~~dl~~a 222 (223)
T cd06915 184 ------A-F---S--LEADVLPALVKRG-RLYGFEVD-GYFIDIGIPEDYARA 222 (223)
T ss_pred ------C-C---C--hHHHHHHHHHhcC-cEEEEecC-CeEEecCCHHHHHhh
Confidence 1 0 0 0112222223332 45566665 568999999998776
No 51
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.37 E-value=1.9e-11 Score=116.01 Aligned_cols=176 Identities=18% Similarity=0.275 Sum_probs=116.7
Q ss_pred EEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 82 vviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
+||||||.||||+. ..||.|+|+ .|+|++++.++.+...+-+ .+++.+++ ..+.+.+++.++...+..+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v-~g~pli~~~l~~l~~~g~~-----~i~vv~~~-~~~~i~~~~~~~~~~~~~i~ 73 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPI-AGKPILEYIIERLARAGID-----EIILVVGY-LGEQIEEYFGDGSKFGVNIE 73 (217)
T ss_pred CEEecCCccccccccccCCCccccEE-CCeeHHHHHHHHHHHCCCC-----EEEEEecc-CHHHHHHHHcChhhcCceEE
Confidence 48999999999984 689999999 9999999999999886422 34455555 56777777765321112344
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQ 238 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~~~ 238 (469)
+..|. .|.|+|+.+.... +.+ ..++++|.++|++.....-.++.++..
T Consensus 74 ~~~~~------------------------~~~g~~~al~~~~-----~~~---~~~~~lv~~~D~~~~~~~~~~~~~~~~ 121 (217)
T cd04181 74 YVVQE------------------------EPLGTAGAVRNAE-----DFL---GDDDFLVVNGDVLTDLDLSELLRFHRE 121 (217)
T ss_pred EEeCC------------------------CCCccHHHHHHhh-----hhc---CCCCEEEEECCeecCcCHHHHHHHHHh
Confidence 33332 1467777754332 222 457899999999665433456666777
Q ss_pred cCCcceEEEeeeccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHH
Q 012172 239 NKNEYCMEVTPKTLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVE 309 (469)
Q Consensus 239 ~~~~~~~~v~~k~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~ 309 (469)
++++.++.+.+. ..+..+|.+..+ +|++ .++|..+.+. -...|+|.++|+.+.+ +.++
T Consensus 122 ~~~~~~~~~~~~-~~~~~~~~v~~d~~~~v~~~~ek~~~~~-----------~~~~~~Giy~~~~~~~-~~l~ 181 (217)
T cd04181 122 KGADATIAVKEV-EDPSRYGVVELDDDGRVTRFVEKPTLPE-----------SNLANAGIYIFEPEIL-DYIP 181 (217)
T ss_pred cCCCEEEEEEEc-CCCCcceEEEEcCCCcEEEEEECCCCCC-----------CCEEEEEEEEECHHHH-Hhhh
Confidence 777776665443 366778877654 3666 4666433221 2468999999999877 4444
No 52
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=8.8e-11 Score=119.89 Aligned_cols=321 Identities=16% Similarity=0.234 Sum_probs=178.5
Q ss_pred cceeEEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHH-hc-C
Q 012172 78 DKLVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEK-YS-K 152 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~-~~-g 152 (469)
+++-++|||||+|+||+- ..||+..|+.+.--++|..+..+..-+ --.+.+.|-+..+ ...+++.. +. +
T Consensus 4 ~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSG-----i~~I~VltQy~~~-SL~~Hi~~G~~w~ 77 (393)
T COG0448 4 KNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSG-----IRRIGVLTQYKSH-SLNDHIGRGWPWD 77 (393)
T ss_pred cceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccC-----CCeEEEEeccchh-HHHHHhhCCCccc
Confidence 467889999999999984 679999999444456666665554432 1245556666555 55566664 22 1
Q ss_pred ---CCCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcccccccc
Q 012172 153 ---SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVD 229 (469)
Q Consensus 153 ---~~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~d 229 (469)
....+.++.+...+ ..--|+ -|+.|++. ++ +..+.+.+.+|++|+++|-+.+..-
T Consensus 78 l~~~~~~v~ilp~~~~~----------------~~~~wy-~Gtadai~---Qn--l~~i~~~~~eyvlIlsgDhIYkmDy 135 (393)
T COG0448 78 LDRKNGGVFILPAQQRE----------------GGERWY-EGTADAIY---QN--LLIIRRSDPEYVLILSGDHIYKMDY 135 (393)
T ss_pred cccccCcEEEeCchhcc----------------CCCcce-eccHHHHH---Hh--HHHHHhcCCCEEEEecCCEEEecCH
Confidence 11224433311100 122344 56777643 22 3445577889999999999999744
Q ss_pred HHHHHHHHHcCCcceEEE--eeeccCCCcceEEEEe--CCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHH
Q 012172 230 LKILNHLIQNKNEYCMEV--TPKTLADVKGGTLISY--EGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIK 305 (469)
Q Consensus 230 p~~Lg~~~~~~~~~~~~v--~~k~~~~~~~G~iv~~--~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~ 305 (469)
-.+|-+|.+.++++++.+ +++..+.+ .| +... +|++ +|..+=|.+. .....+...|+|.|+.+.|.
T Consensus 136 ~~ml~~H~~~gadiTv~~~~Vp~~eas~-fG-im~~D~~~~i--~~F~eKp~~~------~~~~~laSMgiYIf~~~~L~ 205 (393)
T COG0448 136 SDMLDFHIESGADVTVAVKEVPREEASR-FG-VMNVDENGRI--IEFVEKPADG------PPSNSLASMGIYIFNTDLLK 205 (393)
T ss_pred HHHHHHHHHcCCCEEEEEEECChHhhhh-cC-ceEECCCCCE--EeeeeccCcC------CcccceeeeeeEEEcHHHHH
Confidence 588999999999998877 44544444 45 4443 4555 4444434331 12234678999999999999
Q ss_pred HHHHhcccccccccCCCcCCCcceehhHHHhhhHhhhc---ccceeEeecCccccccCCchhHHHHHHHHH----Hhh--
Q 012172 306 RLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFF---DHAIGCNVHRSRFLPVKATSDLLLVQSDLY----TLA-- 376 (469)
Q Consensus 306 ~~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~---~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~----~l~-- 376 (469)
++|++. ..+++.- -.+-.+.++.. .++.+. +|.+ --.|.-+.+|-|+ .+.
T Consensus 206 ~~L~~~------~~~~~~~--------~DfgkdiIp~~~~~~~v~AY-----~f~g--Yw~dVgTi~syy~aNmdLl~~~ 264 (393)
T COG0448 206 ELLEED------AKDPNSS--------HDFGKDIIPKLLERGKVYAY-----EFSG--YWRDVGTIDSYYEANMDLLSPQ 264 (393)
T ss_pred HHHHHH------hcccCcc--------ccchHHHHHHHHhcCCEEEE-----eccc--hhhhcccHHHHHHhhHHhcCCC
Confidence 999862 1111211 01222222211 112222 2332 1112222222222 111
Q ss_pred cCceeecCC-cc----CCCCCeEEECCCcccccccccccccCCcccccCceEEEe---eEEECCCcEEeeeEEEEecCCC
Q 012172 377 DGFVTRNEA-RK----NPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTG---DVWFGANITLKGKVTIAAKSGE 448 (469)
Q Consensus 377 ~g~l~~~~~-r~----~~~~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G---~v~fg~~V~i~g~~~I~~~~~~ 448 (469)
...-.-++. ++ ...+|+-.. +-++.. -||+ +..++|+| +.++++||+|+.+++|+++.--
T Consensus 265 ~~~~lyd~~w~IyT~~~~~pPak~~-----~~s~v~------nSLv-~~GciI~G~V~nSVL~~~v~I~~gs~i~~svim 332 (393)
T COG0448 265 PELNLYDRNWPIYTKNKNLPPAKFV-----NDSEVS------NSLV-AGGCIISGTVENSVLFRGVRIGKGSVIENSVIM 332 (393)
T ss_pred CcccccCCCCceeecCCCCCCceEe-----cCceEe------eeee-eCCeEEEeEEEeeEEecCeEECCCCEEEeeEEe
Confidence 111111111 00 011222221 111100 1222 36788888 4567899999988888866544
Q ss_pred c-eeeCCCCeeecceecCCCCC
Q 012172 449 K-LEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 449 ~-~~I~~~s~le~~~v~~~~~~ 469 (469)
+ +.|+.+++|+.++|..|+.|
T Consensus 333 ~~~~IG~~~~l~~aIIDk~v~I 354 (393)
T COG0448 333 PDVEIGEGAVLRRAIIDKNVVI 354 (393)
T ss_pred CCcEECCCCEEEEEEeCCCcEe
Confidence 4 88999999999998887764
No 53
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.34 E-value=2.8e-10 Score=110.26 Aligned_cols=228 Identities=11% Similarity=0.106 Sum_probs=126.8
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCccc-EEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVP-LLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~ip-lviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
++.+|+||||.|+||+ ||.|+++ .|+|+|+|+++++.+.. .+. +++-+ . ++.+.+++..+ ++
T Consensus 1 ~~~~iIlA~g~s~R~~---~K~l~~i-~gkpll~~~l~~l~~~~-----~i~~ivvv~-~--~~~i~~~~~~~-----~~ 63 (239)
T cd02517 1 KVIVVIPARYASSRLP---GKPLADI-AGKPMIQHVYERAKKAK-----GLDEVVVAT-D--DERIADAVESF-----GG 63 (239)
T ss_pred CEEEEEecCCCCCCCC---CCCCccc-CCcCHHHHHHHHHHhCC-----CCCEEEEEC-C--cHHHHHHHHHc-----CC
Confidence 4678999999999996 7999999 99999999999998761 122 33322 2 46777777642 23
Q ss_pred EEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHH
Q 012172 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNH 235 (469)
Q Consensus 158 ~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~ 235 (469)
.+..+.. ..+.|+|++..++. .+ ....+++++.++|+ +....+. .++..
T Consensus 64 ~~~~~~~----------------------~~~~gt~~~~~~~~------~~-~~~~d~vlv~~gD~Pli~~~~l~~l~~~ 114 (239)
T cd02517 64 KVVMTSP----------------------DHPSGTDRIAEVAE------KL-DADDDIVVNVQGDEPLIPPEMIDQVVAA 114 (239)
T ss_pred EEEEcCc----------------------ccCchhHHHHHHHH------hc-CCCCCEEEEecCCCCCCCHHHHHHHHHH
Confidence 3322221 12456776544331 22 11237899999999 7765443 33433
Q ss_pred HHHc-CCcceEEEeeeccC-----CCcceEEEEeCCeeE-EEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHH
Q 012172 236 LIQN-KNEYCMEVTPKTLA-----DVKGGTLISYEGKVQ-LLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLV 308 (469)
Q Consensus 236 ~~~~-~~~~~~~v~~k~~~-----~~~~G~iv~~~g~~~-ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l 308 (469)
+... ++++++-+++..++ ...+|++...+|++. +.|. ..+++. .. . .....+.|+|+|.|+.+.++.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~-~~~~~~-~~-~-~~~~~~~~~Giy~~~~~~~~~~~ 190 (239)
T cd02517 115 LKDDPGVDMATLATPISDEEELFNPNVVKVVLDKDGYALYFSRS-PIPYPR-DS-S-EDFPYYKHIGIYAYRRDFLLRFA 190 (239)
T ss_pred HHhCCCCCEEEEEEEcCCHHHccCCCCCEEEECCCCCEEEecCC-CCCCCC-CC-C-CCCceeEEEEEEEECHHHHHHHH
Confidence 3333 45554444443221 222334433456542 2221 112111 00 0 01235789999999999998875
Q ss_pred HhcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHH
Q 012172 309 EADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQS 370 (469)
Q Consensus 309 ~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~ 370 (469)
... . +.......+.+ ..+++.-.++.++.++. .+..|++..||..|++
T Consensus 191 ~~~-------~--~~~~~~~~~~~----~~~~~~g~~v~~~~~~~-~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 191 ALP-------P--SPLEQIESLEQ----LRALENGYKIKVVETDH-ESIGVDTPEDLERVEA 238 (239)
T ss_pred hCC-------C--chhhhhhhHHH----HHHHHCCCceEEEEeCC-CCCCCCCHHHHHHHHh
Confidence 420 0 00000011111 01222222345555544 4999999999998874
No 54
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=99.33 E-value=3.1e-10 Score=114.60 Aligned_cols=245 Identities=11% Similarity=0.065 Sum_probs=143.5
Q ss_pred eeEEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCC--
Q 012172 80 LVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSN-- 154 (469)
Q Consensus 80 ~avviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~-- 154 (469)
..+||||||.||||+. ..||.|+|+ .|+|++++.++.+.+.+-+ .+++.+++ ..+.+.++|.......
T Consensus 9 ~~aiIlaaG~g~Rl~~~t~~~pK~l~pv-~g~pii~~~l~~l~~~gi~-----~i~vv~~~-~~~~i~~~~~~~~~~~~~ 81 (302)
T PRK13389 9 KKAVIPVAGLGTRMLPATKAIPKEMLPL-VDKPLIQYVVNECIAAGIT-----EIVLVTHS-SKNSIENHFDTSFELEAM 81 (302)
T ss_pred eEEEEECCcCCccCCCccCCCCceeeEE-CCEEHHHHHHHHHHHCCCC-----EEEEEeCC-CHHHHHHHHccchhhhhh
Confidence 3479999999999975 689999999 9999999999999886422 23444455 6788888886311000
Q ss_pred ----CceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccc----
Q 012172 155 ----VEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGA---- 226 (469)
Q Consensus 155 ----~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~---- 226 (469)
.+..+ .|+-.... ..+.. +. ......|.|+||++.... .++ +-+.++|.++|++..
T Consensus 82 l~~~~~~~~-~~e~~~i~-~~~~~-i~-----~~~q~~~~Gtg~Av~~a~------~~~--~~~~~lVl~gD~~~~~~~~ 145 (302)
T PRK13389 82 LEKRVKRQL-LDEVQSIC-PPHVT-IM-----QVRQGLAKGLGHAVLCAH------PVV--GDEPVAVILPDVILDEYES 145 (302)
T ss_pred hhhhhhhHH-HHhhhhcc-ccCce-EE-----EeecCCCCChHHHHHHHH------HHc--CCCCEEEEeCcceeccccc
Confidence 00000 00000000 00000 00 011234789999864322 222 235689999999642
Q ss_pred ---cccH-HHHHHHHHcCCcceEEEeeeccCCCcceEEEEeC--------Cee-EEEEeccCChhhhhhccccccccEEE
Q 012172 227 ---IVDL-KILNHLIQNKNEYCMEVTPKTLADVKGGTLISYE--------GKV-QLLEIAQVPDEHVNEFKSIEKFKIFN 293 (469)
Q Consensus 227 ---~~dp-~~Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~~~--------g~~-~ivEy~~~~~e~~~~~~~~~~~~~~N 293 (469)
..|. .++.++.+.+++ ++-+ .+..++..+|++...+ |++ .++|....+. ..-...|
T Consensus 146 ~~~~~dl~~l~~~h~~~~~~-tl~~-~~~~~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~---------~~s~~~~ 214 (302)
T PRK13389 146 DLSQDNLAEMIRRFDETGHS-QIMV-EPVADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADV---------APSNLAI 214 (302)
T ss_pred ccccccHHHHHHHHHhcCCC-EEEE-EEcccCCcceEEEecCcccccCCcceEEEEEECCCCCC---------CCccEEE
Confidence 2342 556666666665 3333 3446678899987642 234 4666433211 1124689
Q ss_pred EEeEEEeHHHHHHHHHhcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHH
Q 012172 294 TNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDL 372 (469)
Q Consensus 294 t~~~~~~l~~L~~~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~ 372 (469)
+|+|+|+.+.+ +.++. ... . ....+.+..++..+++. .++.++.++ ..+.-|.+..++..+..++
T Consensus 215 ~GiYi~~~~il-~~l~~-------~~~-~---~~~e~~l~d~i~~l~~~-~~v~~~~~~-G~w~DIGtpe~~~~a~~~~ 279 (302)
T PRK13389 215 VGRYVLSADIW-PLLAK-------TPP-G---AGDEIQLTDAIDMLIEK-ETVEAYHMK-GKSHDCGNKLGYMQAFVEY 279 (302)
T ss_pred EEEEEECHHHH-HHHHh-------CCC-C---CCCeeeHHHHHHHHHHc-CCEEEEEee-eEEEeCCCHHHHHHHHHHH
Confidence 99999998876 55543 111 1 12235556666665554 244455443 4688999999998886664
No 55
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.32 E-value=4.9e-11 Score=118.79 Aligned_cols=190 Identities=14% Similarity=0.144 Sum_probs=116.4
Q ss_pred eEEEEcCCCCCcCC----CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCc
Q 012172 81 VVLKLNGGLGTTMG----CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVE 156 (469)
Q Consensus 81 avviLAGG~GTRmg----~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~ 156 (469)
.+||||||.||||. ...||.++++.+++|||++.++++..+.. .-.++|.|+....+.+++++++ .. ..
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~----~~~i~vvt~~~~~~~v~~~l~~-~~--~~ 74 (274)
T cd02509 2 YPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVP----PDRILVVTNEEYRFLVREQLPE-GL--PE 74 (274)
T ss_pred EEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCC----CCcEEEEechHHHHHHHHHHhh-cC--CC
Confidence 47999999999996 57899999994349999999999987731 1256666666444556666653 11 12
Q ss_pred eEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHH-cCCcEEEEEeCcccccc-ccH-HHH
Q 012172 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALIS-QGKEYVFAANSDNLGAI-VDL-KIL 233 (469)
Q Consensus 157 i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~-~G~~~v~v~n~DNL~~~-~dp-~~L 233 (469)
+.++.|. .+.|+|+...... ..+.. .+-++++|+++|.+... .+. ..+
T Consensus 75 ~~ii~ep------------------------~~~gTa~ai~~a~-----~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l 125 (274)
T cd02509 75 ENIILEP------------------------EGRNTAPAIALAA-----LYLAKRDPDAVLLVLPSDHLIEDVEAFLKAV 125 (274)
T ss_pred ceEEECC------------------------CCCCcHHHHHHHH-----HHHHhcCCCCeEEEecchhcccCHHHHHHHH
Confidence 3333222 2577888753321 12222 23468999999995532 221 123
Q ss_pred HHHH---HcCCcceEEEeeeccCCCcceEEEEeC---C---ee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHH
Q 012172 234 NHLI---QNKNEYCMEVTPKTLADVKGGTLISYE---G---KV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKA 303 (469)
Q Consensus 234 g~~~---~~~~~~~~~v~~k~~~~~~~G~iv~~~---g---~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~ 303 (469)
..+. +.+..+++.+.+ +.+..+||.+...+ | ++ +++|..+....+ .+-. .+-.+.|+|+|+|+.+.
T Consensus 126 ~~~~~~~~~~~~vt~gi~p-~~~~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~--~~~~-~g~~~wNsGiyi~~~~~ 201 (274)
T cd02509 126 KKAVEAAEEGYLVTFGIKP-TRPETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAK--EYLE-SGNYLWNSGIFLFRAKT 201 (274)
T ss_pred HHHHHHHHcCCEEEEEeee-cCCCCCeEEEEeCCcCCCCceEEeEEEECcChHHHH--HHhh-cCCeEEECceeeeeHHH
Confidence 2222 234444444444 46778899987642 2 44 467765543322 1100 12236799999999999
Q ss_pred HHHHHHh
Q 012172 304 IKRLVEA 310 (469)
Q Consensus 304 L~~~l~~ 310 (469)
+.+.+++
T Consensus 202 l~~~l~~ 208 (274)
T cd02509 202 FLEELKK 208 (274)
T ss_pred HHHHHHH
Confidence 9999876
No 56
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=99.30 E-value=2.6e-10 Score=112.55 Aligned_cols=229 Identities=14% Similarity=0.098 Sum_probs=137.6
Q ss_pred eEEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcC-----
Q 012172 81 VVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSK----- 152 (469)
Q Consensus 81 avviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g----- 152 (469)
-+||||||.||||+. ..||.|+|+ .|+|++++.++++.+.+-+ .++|.|++ ..+.+.++|.....
T Consensus 2 kaiIlAaG~gtRl~plt~~~pK~llpv-~gkpli~~~l~~l~~~gi~-----~i~iv~~~-~~~~i~~~~~~~~~~~~~~ 74 (267)
T cd02541 2 KAVIPAAGLGTRFLPATKAIPKEMLPI-VDKPVIQYIVEEAVAAGIE-----DIIIVTGR-GKRAIEDHFDRSYELEETL 74 (267)
T ss_pred eEEEEcCCCCccCCCcccCCCceeeEE-CCEEHHHHHHHHHHHCCCC-----EEEEEeCC-chHHHHHHhCCcHHHHHHH
Confidence 479999999999984 789999999 8999999999999875422 44555565 66778888753110
Q ss_pred --C--------------CCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEE
Q 012172 153 --S--------------NVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYV 216 (469)
Q Consensus 153 --~--------------~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v 216 (469)
. +..+.+.. +..|.|+|+.+.... ..+. .+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~i~~~~------------------------~~~~~Gt~~al~~~~------~~i~--~~~~ 122 (267)
T cd02541 75 EKKGKTDLLEEVRIISDLANIHYVR------------------------QKEPLGLGHAVLCAK------PFIG--DEPF 122 (267)
T ss_pred HhcccHHHhhhhhcccCCceEEEEE------------------------cCCCCChHHHHHHHH------HHhC--CCce
Confidence 0 00112111 234689988764332 2222 2678
Q ss_pred EEEeCcccccccc---HHHHHHHHHcCCcceEEEeee-ccCCCcceEEEEeC-----Cee-EEEEeccCChhhhhhcccc
Q 012172 217 FAANSDNLGAIVD---LKILNHLIQNKNEYCMEVTPK-TLADVKGGTLISYE-----GKV-QLLEIAQVPDEHVNEFKSI 286 (469)
Q Consensus 217 ~v~n~DNL~~~~d---p~~Lg~~~~~~~~~~~~v~~k-~~~~~~~G~iv~~~-----g~~-~ivEy~~~~~e~~~~~~~~ 286 (469)
+|.++|++....| -.++..+...+.+. +.+... ......+|++..++ |++ .++|-... +.
T Consensus 123 lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~--~~------- 192 (267)
T cd02541 123 AVLLGDDLIDSKEPCLKQLIEAYEKTGASV-IAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKP--EE------- 192 (267)
T ss_pred EEEECCeEEeCCchHHHHHHHHHHHhCCCE-EEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCC--CC-------
Confidence 8999999554332 24556565555543 222221 12456688876542 244 35553221 11
Q ss_pred ccccEEEEEeEEEeHHHHHHHHHhcccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHH
Q 012172 287 EKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLL 366 (469)
Q Consensus 287 ~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~ 366 (469)
..-...|+|+|+|+.+.+..+... .+ + ..++ +.+..++..++..- ++.++.++ ..+.-|.+..++.
T Consensus 193 ~~~~~~~~Giyi~~~~~~~~l~~~--------~~-~-~~~e--~~~~d~i~~l~~~~-~v~~~~~~-g~w~digt~~~y~ 258 (267)
T cd02541 193 APSNLAIVGRYVLTPDIFDILENT--------KP-G-KGGE--IQLTDAIAKLLEEE-PVYAYVFE-GKRYDCGNKLGYL 258 (267)
T ss_pred CCCceEEEEEEEcCHHHHHHHHhC--------CC-C-CCCc--EEHHHHHHHHHhcC-CEEEEEee-eEEEeCCCHHHHH
Confidence 112467999999999876554221 11 1 1122 33445555455442 56666665 4689999999998
Q ss_pred HHHHHH
Q 012172 367 LVQSDL 372 (469)
Q Consensus 367 ~~~~~~ 372 (469)
.+..++
T Consensus 259 ~a~~~~ 264 (267)
T cd02541 259 KATVEF 264 (267)
T ss_pred HHHHHH
Confidence 887765
No 57
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=99.28 E-value=6.4e-10 Score=109.14 Aligned_cols=235 Identities=14% Similarity=0.108 Sum_probs=137.4
Q ss_pred EEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 82 vviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
+|+||||.||||+. +.||.|+|| .|+|++++.++.+...+-+ .++|.+++ ..+.++++++++.....++.
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv-~~~p~i~~~~~~~~~~gi~-----~i~iv~~~-~~~~i~~~~~~~~~~~~~~~ 73 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEI-GGRPILWHIMKIYSHYGHN-----DFILCLGY-KGHVIKEYFLNYFLHNSDVT 73 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEE-CCEEHHHHHHHHHHhCCCc-----eEEEECCC-CHHHHHHHHHhhhhhcCcee
Confidence 48999999999974 689999999 9999999999998876422 34444455 77889999987432111233
Q ss_pred EEEecCcceecCCCCcccCCC-CCCCC----cccccCCCcccchhccccchHHHHHHcCC-cEEEEEeCccccccccHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCK-GKTDK----DGWYPPGHGDVFPSLMNSGKLDALISQGK-EYVFAANSDNLGAIVDLKI 232 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~-~~~~~----~~~~P~GhGd~~~~L~~sg~L~~l~~~G~-~~v~v~n~DNL~~~~dp~~ 232 (469)
+-.|+.- +-...+ ..++. ....|.|+|+.+.... ..+ +. ++++|+|+|++....--.+
T Consensus 74 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~------~~~--~~~~~~lv~~gD~i~~~dl~~l 137 (253)
T cd02524 74 IDLGTNR--------IELHNSDIEDWKVTLVDTGLNTMTGGRLKRVR------RYL--GDDETFMLTYGDGVSDVNINAL 137 (253)
T ss_pred Eeecccc--------eeeecccccccceeecccCcccccHHHHHHHH------Hhc--CCCCeEEEEcCCEEECCCHHHH
Confidence 3222100 000000 00011 1123677877743221 112 22 7999999999654321355
Q ss_pred HHHHHHcCCcceEEEeeeccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHh
Q 012172 233 LNHLIQNKNEYCMEVTPKTLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEA 310 (469)
Q Consensus 233 Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~ 310 (469)
+.++...++++.+.++. ++..+|++..+ +|++ .++|..+.+ -...|+|++.++.+.++.+ .+
T Consensus 138 l~~h~~~~~~~tl~~~~---~~~~~g~v~~d~~g~V~~~~ekp~~~------------~~~i~~Giyi~~~~l~~~l-~~ 201 (253)
T cd02524 138 IEFHRSHGKLATVTAVH---PPGRFGELDLDDDGQVTSFTEKPQGD------------GGWINGGFFVLEPEVFDYI-DG 201 (253)
T ss_pred HHHHHHcCCCEEEEEec---CCCcccEEEECCCCCEEEEEECCCCC------------CceEEEEEEEECHHHHHhh-cc
Confidence 66666667777655442 45667876653 5666 466643221 1358999999998876432 22
Q ss_pred cccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHH
Q 012172 311 DALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLY 373 (469)
Q Consensus 311 ~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~ 373 (469)
. + . ...+.++...++- .++.+++++- .+.-|.+..++..++..+.
T Consensus 202 ~----------~---~---~~~~d~l~~li~~-~~v~~~~~~g-~w~~I~t~~~~~~~~~~~~ 246 (253)
T cd02524 202 D----------D---T---VFEREPLERLAKD-GELMAYKHTG-FWQCMDTLRDKQTLEELWN 246 (253)
T ss_pred c----------c---c---hhhHHHHHHHHhc-CCEEEEecCC-EEEeCcCHHHHHHHHHHHH
Confidence 0 1 0 0112333333332 1344445433 5788999999999886653
No 58
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.27 E-value=1.5e-10 Score=111.57 Aligned_cols=223 Identities=17% Similarity=0.193 Sum_probs=131.7
Q ss_pred EEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 82 vviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
+||||||+||||+- ..||.|+|+ .|+|++++.++++...+-+ .+++.+++ ..+.+.+++.++ ..+.
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~-~g~~li~~~l~~l~~~gi~-----~i~vv~~~-~~~~~~~~~~~~----~~~~ 69 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEI-NGKPLLERQIETLKEAGID-----DIVIVTGY-KKEQIEELLKKY----PNIK 69 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeE-CCEEHHHHHHHHHHHCCCc-----eEEEEecc-CHHHHHHHHhcc----CCeE
Confidence 48999999999985 569999999 9999999999998876422 34555565 677777777642 1244
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQ 238 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~~~ 238 (469)
+..+.. +.+.|.++.+.... +.+ .++++|+++|++. ++.++..+.+
T Consensus 70 ~~~~~~----------------------~~~~g~~~s~~~~~-----~~~----~~~~lv~~~D~~~---~~~~~~~~~~ 115 (229)
T cd02523 70 FVYNPD----------------------YAETNNIYSLYLAR-----DFL----DEDFLLLEGDVVF---DPSILERLLS 115 (229)
T ss_pred EEeCcc----------------------hhhhCcHHHHHHHH-----HHc----CCCEEEEeCCEec---CHHHHHHHHc
Confidence 333321 12466666543221 222 3789999999964 4456777877
Q ss_pred cCCcceEEEeeecc-CCCcceEEEEeCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccc
Q 012172 239 NKNEYCMEVTPKTL-ADVKGGTLISYEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKME 316 (469)
Q Consensus 239 ~~~~~~~~v~~k~~-~~~~~G~iv~~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp 316 (469)
.+.+.++.+.+... ....++.....+|++ .++|...-+ ......|+|++.++.+.+..+.+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~----------~~~~~~~~Giy~~~~~~~~~l~~~------ 179 (229)
T cd02523 116 SPADNAILVDKKTKEWEDEYVKDLDDAGVLLGIISKAKNL----------EEIQGEYVGISKFSPEDADRLAEA------ 179 (229)
T ss_pred CCCCCeEEEccCcccccccceeeecCccceEeecccCCCc----------chhceEEEeEEEECHHHHHHHHHH------
Confidence 78887776654221 122233322222333 455533222 112468999999999998776542
Q ss_pred cccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHH
Q 012172 317 IIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLV 368 (469)
Q Consensus 317 ~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~ 368 (469)
+...... +.....++.++...+.. .+..+..+....+.-|.+..|+..|
T Consensus 180 -~~~~~~~-~~~~~~~~d~i~~l~~~-~~~~v~~~~~~~w~dI~~~ed~~~a 228 (229)
T cd02523 180 -LEELIEA-GRVNLYYEDALQRLISE-EGVKVKDISDGFWYEIDDLEDLERA 228 (229)
T ss_pred -HHHHHhc-ccccccHHHHHHHHHhh-cCeeEEEcCCCCEEEeCCHHHHHhh
Confidence 1110001 11223345666655542 1222223333456778888887665
No 59
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.27 E-value=6.5e-10 Score=108.25 Aligned_cols=229 Identities=15% Similarity=0.145 Sum_probs=147.7
Q ss_pred EEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 82 VLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 82 vviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
-||||||.||||. ...||.|+|| .+|||++|.++++...+-+ +|-+++ ++.+....++++..-.....+++
T Consensus 3 giILAgG~GTRL~PlT~~~~KqLlpV-~~KPmi~y~l~~L~~aGI~---dI~II~--~~~~~~~~~~llGdgs~~gv~it 76 (286)
T COG1209 3 GVILAGGSGTRLRPLTRVVPKQLLPV-YDKPMIYYPLETLMLAGIR---DILIVV--GPEDKPTFKELLGDGSDFGVDIT 76 (286)
T ss_pred cEEecCcCccccccccccCCccccee-cCcchhHhHHHHHHHcCCc---eEEEEe--cCCchhhhhhhhcCccccCcceE
Confidence 4899999999997 5889999999 9999999999999998754 454444 56455555555543111235788
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQ 238 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~~~ 238 (469)
+..|.+ |.|-++++.. -+++. |-+.+.++-+||+..---..++..+.+
T Consensus 77 Y~~Q~~------------------------p~GlA~Av~~------a~~fv--~~~~f~l~LGDNi~~~~l~~~~~~~~~ 124 (286)
T COG1209 77 YAVQPE------------------------PDGLAHAVLI------AEDFV--GDDDFVLYLGDNIFQDGLSELLEHFAE 124 (286)
T ss_pred EEecCC------------------------CCcHHHHHHH------HHhhc--CCCceEEEecCceeccChHHHHHHHhc
Confidence 888883 7898888642 23444 347889999999443322344544444
Q ss_pred cCCcceEEEeeeccCCCcceEEEEe-CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccc
Q 012172 239 NKNEYCMEVTPKTLADVKGGTLISY-EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKME 316 (469)
Q Consensus 239 ~~~~~~~~v~~k~~~~~~~G~iv~~-~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp 316 (469)
.+.+..+ ...+-++|+.+|++..+ +|++ .|+|--+.|+. .+.=+|.|+++-+...-+ +.
T Consensus 125 ~~~ga~i-~~~~V~dP~rfGV~e~d~~~~v~~l~EKP~~P~S-----------NlAvtGlY~~d~~Vf~~~-~~------ 185 (286)
T COG1209 125 EGSGATI-LLYEVDDPSRYGVVEFDEDGKVIGLEEKPKEPKS-----------NLAVTGLYFYDPSVFEAI-KQ------ 185 (286)
T ss_pred cCCCcEE-EEEEcCCcccceEEEEcCCCcEEEeEECCCCCCC-----------ceeEEEEEEeChHHHHHH-Hc------
Confidence 3333322 23444688999988775 6776 47776555544 478899999998665432 21
Q ss_pred cccCCCcCC-CcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHHH
Q 012172 317 IIPNPKEVD-GIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLYT 374 (469)
Q Consensus 317 ~~~n~K~~~-g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~~ 374 (469)
-|... ||..| ..++...+..-.....+.... .+.=+-+.++|+.|.+-...
T Consensus 186 ----ikPS~RGElEI--Td~i~~~i~~G~~~~~~~~~G-~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 186 ----IKPSARGELEI--TDAIDLYIEKGYLVVAILIRG-WWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred ----CCCCCCCceEe--hHHHHHHHHcCcEEEEEEccc-eEEecCChhhHHHHHHHHHH
Confidence 12111 55544 344444444443333333333 67888888998887666654
No 60
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=99.27 E-value=1.4e-10 Score=113.94 Aligned_cols=195 Identities=10% Similarity=0.069 Sum_probs=112.3
Q ss_pred eEEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 81 VVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 81 avviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
.+||||||.||||+. ..||.|+|+ .|+|++++.++.+...+-+ .++|.|++ ..+.+.++|.+......+.
T Consensus 2 ~avIlAaG~gtRl~plt~~~pK~llpi-~g~pli~~~l~~l~~~gi~-----~v~iv~~~-~~~~i~~~~~~~~~~~~~~ 74 (260)
T TIGR01099 2 KAVIPAAGLGTRFLPATKAIPKEMLPI-VDKPLIQYVVEEAVEAGIE-----DILIVTGR-GKRAIEDHFDTSYELEHQL 74 (260)
T ss_pred eEEEEcccCcccCCCcccCCCceeEEE-CCEEHHHHHHHHHHhCCCC-----EEEEEeCC-cHHHHHHHhcccHHHHHHH
Confidence 479999999999986 789999999 8999999999998875422 45566666 6777888885310000000
Q ss_pred EEEEecCcceecC----CCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccc--c-H
Q 012172 158 HTFNQSQYPRLCA----DDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIV--D-L 230 (469)
Q Consensus 158 ~~f~Q~~~P~l~~----~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~--d-p 230 (469)
. .++....++. .....+. ......|.|+|+.+.... + ++ +-+.++|.++|++.... | -
T Consensus 75 ~--~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~G~~~al~~~~-----~-~~--~~~~~lv~~gD~~~~~~~~~~~ 139 (260)
T TIGR01099 75 E--KRGKEELLKEVRSISPLATIF-----YVRQKEQKGLGHAVLCAE-----P-FV--GDEPFAVILGDDIVVSEEPALK 139 (260)
T ss_pred H--hhhhHHHHHHhhhccccceEE-----EEecCCCCCHHHHHHHHH-----H-hh--CCCCEEEEeccceecCCcHHHH
Confidence 0 0000000000 0000000 001224688988754332 1 22 34678999999944322 3 2
Q ss_pred HHHHHHHHcCCcceEEEe-eeccCCCcceEEEEe-----CCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHH
Q 012172 231 KILNHLIQNKNEYCMEVT-PKTLADVKGGTLISY-----EGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKA 303 (469)
Q Consensus 231 ~~Lg~~~~~~~~~~~~v~-~k~~~~~~~G~iv~~-----~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~ 303 (469)
.++.++.+++++. +.+. ....+...+|++..+ +|++ .++|..... + ..-...|+|+|+|+.+.
T Consensus 140 ~l~~~~~~~~~~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~--~-------~~~~~~~~Giyi~~~~~ 209 (260)
T TIGR01099 140 QMIDLYEKYGCSI-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPE--E-------APSNLAIVGRYVLTPDI 209 (260)
T ss_pred HHHHHHHHhCCCE-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCC--C-------CCCceEEEEEEECCHHH
Confidence 5566666667765 3232 222355678887653 2455 466653211 1 11246899999999987
Q ss_pred HHHH
Q 012172 304 IKRL 307 (469)
Q Consensus 304 L~~~ 307 (469)
+..+
T Consensus 210 ~~~l 213 (260)
T TIGR01099 210 FDLL 213 (260)
T ss_pred HHHH
Confidence 6655
No 61
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.26 E-value=8e-11 Score=112.86 Aligned_cols=183 Identities=11% Similarity=0.146 Sum_probs=110.1
Q ss_pred eEEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcC--CC-
Q 012172 81 VVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSK--SN- 154 (469)
Q Consensus 81 avviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g--~~- 154 (469)
-+||||||.||||+ ...||+|+|+ .|+|++++.++.+.+.+-+ .++|.|++ ..+.++++++++.. ..
T Consensus 2 ~aiIla~G~g~Rl~plt~~~pK~llpi-~g~piI~~~l~~l~~~Gi~-----~I~iv~~~-~~~~i~~~l~~~~~~~~~~ 74 (217)
T cd04197 2 QAVVLADSFNRRFRPLTKEKPRCLLPL-ANVPLIDYTLEFLALNGVE-----EVFVFCCS-HSDQIKEYIEKSKWSKPKS 74 (217)
T ss_pred eEEEEcCCCcccccccccCCCceeeEE-CCEehHHHHHHHHHHCCCC-----eEEEEeCC-CHHHHHHHHhhcccccccc
Confidence 36999999999998 4789999999 9999999999999886422 34455565 67889999987431 11
Q ss_pred --CceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccH-H
Q 012172 155 --VEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-K 231 (469)
Q Consensus 155 --~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp-~ 231 (469)
..+.+..|. .+.|.|+++..+...+.+ .+++++.++|++... |. .
T Consensus 75 ~~~~i~~~~~~------------------------~~~~~~~al~~~~~~~~~-------~~~flv~~gD~i~~~-dl~~ 122 (217)
T cd04197 75 SLMIVIIIMSE------------------------DCRSLGDALRDLDAKGLI-------RGDFILVSGDVVSNI-DLKE 122 (217)
T ss_pred CcceEEEEeCC------------------------CcCccchHHHHHhhcccc-------CCCEEEEeCCeeecc-CHHH
Confidence 123322221 246788876544322211 256889999997653 53 5
Q ss_pred HHHHHHHc-----CCcceEEEeeeccCCC-----cceEEEEe-C-Cee-EEEEeccCChhhhhhc-c----c----cccc
Q 012172 232 ILNHLIQN-----KNEYCMEVTPKTLADV-----KGGTLISY-E-GKV-QLLEIAQVPDEHVNEF-K----S----IEKF 289 (469)
Q Consensus 232 ~Lg~~~~~-----~~~~~~~v~~k~~~~~-----~~G~iv~~-~-g~~-~ivEy~~~~~e~~~~~-~----~----~~~~ 289 (469)
++.++.+. ++++.+.+.+...+.. ..|++..+ + |++ .+.|....++...... . . .-..
T Consensus 123 ~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~ 202 (217)
T cd04197 123 ILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRH 202 (217)
T ss_pred HHHHHHHhhccccCceEEEEEEeCCCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEEC
Confidence 67777663 5555554433322221 24665543 3 565 3455444443211000 0 0 1134
Q ss_pred cEEEEEeEEEeHH
Q 012172 290 KIFNTNNLWVNLK 302 (469)
Q Consensus 290 ~~~Nt~~~~~~l~ 302 (469)
.+.++++|.|+.+
T Consensus 203 ~l~d~~iYi~~~~ 215 (217)
T cd04197 203 DLLDCHIDICSPD 215 (217)
T ss_pred CceecCEEEeCCC
Confidence 5678888888754
No 62
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.22 E-value=5.8e-10 Score=106.83 Aligned_cols=173 Identities=15% Similarity=0.116 Sum_probs=106.1
Q ss_pred EEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 82 vviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
+||||||.||||+. ..||.|+|+ .|+|+++++++.+.+.+-+ .+++.++ +..+.+.+++.. ...+.++.
T Consensus 2 aiIlaaG~g~Rl~plt~~~pK~llpi-~g~~li~~~l~~l~~~gi~-----~i~iv~~-~~~~~i~~~~~~-~~~~~~i~ 73 (221)
T cd06422 2 AMILAAGLGTRMRPLTDTRPKPLVPV-AGKPLIDHALDRLAAAGIR-----RIVVNTH-HLADQIEAHLGD-SRFGLRIT 73 (221)
T ss_pred EEEEcCCCCCccccccCCCCCceeeE-CCEEHHHHHHHHHHHCCCC-----EEEEEcc-CCHHHHHHHHhc-ccCCceEE
Confidence 58999999999986 689999999 8999999999999886422 2344444 477888888864 11112233
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQ 238 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~~~ 238 (469)
+..|. ..+.|+|+.+.... + .+ +.++++|+++|++....-..++-.+.+
T Consensus 74 ~~~~~-----------------------~~~~g~~~~l~~~~-----~-~~--~~~~~lv~~~D~i~~~~~~~~~~~~~~ 122 (221)
T cd06422 74 ISDEP-----------------------DELLETGGGIKKAL-----P-LL--GDEPFLVVNGDILWDGDLAPLLLLHAW 122 (221)
T ss_pred EecCC-----------------------CcccccHHHHHHHH-----H-hc--CCCCEEEEeCCeeeCCCHHHHHHHHHh
Confidence 22111 02467776643221 1 22 227899999999665422344555542
Q ss_pred --cCCcceEEEeeeccCCCcceEEEEe-CCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHH
Q 012172 239 --NKNEYCMEVTPKTLADVKGGTLISY-EGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRL 307 (469)
Q Consensus 239 --~~~~~~~~v~~k~~~~~~~G~iv~~-~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~ 307 (469)
.++.+++.+++ ......+|++..+ +|++ .+..+=++ -...|+|++.++.+.+..+
T Consensus 123 ~~~~~~~~~~~~~-~~~~~~~g~v~~d~~~~v--~~~~~~~~-----------~~~~~~Giyi~~~~~l~~l 180 (221)
T cd06422 123 RMDALLLLLPLVR-NPGHNGVGDFSLDADGRL--RRGGGGAV-----------APFTFTGIQILSPELFAGI 180 (221)
T ss_pred ccCCCceEEEEEE-cCCCCCcceEEECCCCcE--eecccCCC-----------CceEEEEEEEEcHHHHhhC
Confidence 33444443333 3345677877654 4544 33221111 1468999999998877654
No 63
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.21 E-value=4.6e-10 Score=108.15 Aligned_cols=222 Identities=13% Similarity=0.108 Sum_probs=121.3
Q ss_pred EEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCC--CChHHHHHHHHHhcCCCCc
Q 012172 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSF--NTHDDTSKIIEKYSKSNVE 156 (469)
Q Consensus 82 vviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~--~t~e~t~~~~~~~~g~~~~ 156 (469)
+|+||||.||||+. ..||.|+|+ .|+|+++++++.+...+- .-.+++ +.. ...+...+.++.+. .+.+
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i-~g~pli~~~l~~l~~~g~----~~ivvv-~~~~~~~~~~~~~~~~~~~-~~~~ 73 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEV-DGKPMIEWVIESLAKIFD----SRFIFI-CRDEHNTKFHLDESLKLLA-PNAT 73 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEE-CCEEHHHHHHHhhhccCC----ceEEEE-EChHHhhhhhHHHHHHHhC-CCCE
Confidence 58999999999964 789999999 999999999999887542 222332 322 11122222332211 1112
Q ss_pred eEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHHH
Q 012172 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHL 236 (469)
Q Consensus 157 i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~~ 236 (469)
+ .+.|. .+.|+++.+.+... .+ .+.++++|.++|++....-..++-.+
T Consensus 74 i-~~~~~------------------------~~~g~~~~l~~a~~------~l-~~~~~~lv~~~D~i~~~~~~~~~~~~ 121 (231)
T cd04183 74 V-VELDG------------------------ETLGAACTVLLAAD------LI-DNDDPLLIFNCDQIVESDLLAFLAAF 121 (231)
T ss_pred E-EEeCC------------------------CCCcHHHHHHHHHh------hc-CCCCCEEEEecceeeccCHHHHHHHh
Confidence 2 12222 25777776543221 11 12468999999996543212334334
Q ss_pred HHcCCcceEEEeeeccCCCcceEEEE-eCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHH-HHHHHHHhccc
Q 012172 237 IQNKNEYCMEVTPKTLADVKGGTLIS-YEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLK-AIKRLVEADAL 313 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~~~~G~iv~-~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~-~L~~~l~~~~~ 313 (469)
...+.+..+-++.+ +...+|.+.. .+|++ .++|. +.. -...|+|.|+|+.+ .+.+.++..
T Consensus 122 ~~~~~~~~i~~~~~--~~~~~~~v~~d~~~~v~~~~ek-~~~------------~~~~~~Giy~~~~~~~~~~~l~~~-- 184 (231)
T cd04183 122 RERDLDGGVLTFFS--SHPRWSYVKLDENGRVIETAEK-EPI------------SDLATAGLYYFKSGSLFVEAAKKM-- 184 (231)
T ss_pred hccCCceEEEEEeC--CCCCeEEEEECCCCCEEEeEEc-CCC------------CCccEeEEEEECcHHHHHHHHHHH--
Confidence 44444544433333 3446776654 35666 45653 111 13579999999987 444555420
Q ss_pred ccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhH
Q 012172 314 KMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDL 365 (469)
Q Consensus 314 ~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL 365 (469)
+.+.....++ +.++.++..++..-.++.++.++...|.-|.+..||
T Consensus 185 ----~~~~~~~~~~--~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 185 ----IRKDDSVNGE--FYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred ----HhhcccccCc--EEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 1011001122 223455555555444466666665567777777664
No 64
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.19 E-value=2.6e-10 Score=107.93 Aligned_cols=156 Identities=15% Similarity=0.217 Sum_probs=100.6
Q ss_pred EEEEcCCCCCcCC---CCCCccccccCCCC-chHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhc--CCC-
Q 012172 82 VLKLNGGLGTTMG---CTGPKSVIEVRNGL-TFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYS--KSN- 154 (469)
Q Consensus 82 vviLAGG~GTRmg---~~~PK~l~~v~~gk-s~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~--g~~- 154 (469)
+|+||||.||||. .+.||.|+|+ .|+ |+++++++.+...+-+ .++|.+++ ..+.+.+++.+.. +..
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv-~g~~pli~~~l~~l~~~gi~-----~iivv~~~-~~~~i~~~~~~~~~~~~~~ 73 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPF-GGRYRLIDFPLSNMVNSGIR-----NVGVLTQY-KSRSLNDHLGSGKEWDLDR 73 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEE-CCeeeeHHHHHHHHHHCCCC-----EEEEEeCC-ChHHHHHHHhCCCcccCCC
Confidence 4899999999997 4789999999 898 9999999999886422 44555566 6788888886421 100
Q ss_pred --CceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHH
Q 012172 155 --VEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKI 232 (469)
Q Consensus 155 --~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~ 232 (469)
..+... +... ...+..|.|+|+.+.... +.+....-++++|.++|++....--.+
T Consensus 74 ~~~~~~~~-~~~~-----------------~~~~~~~~Gta~al~~a~-----~~i~~~~~~~~lv~~gD~v~~~~~~~~ 130 (200)
T cd02508 74 KNGGLFIL-PPQQ-----------------RKGGDWYRGTADAIYQNL-----DYIERSDPEYVLILSGDHIYNMDYREM 130 (200)
T ss_pred CCCCEEEe-Cccc-----------------CCCCCcccCcHHHHHHHH-----HHHHhCCCCEEEEecCCEEEecCHHHH
Confidence 012111 1100 002235789999865433 233233347899999999655322255
Q ss_pred HHHHHHcCCcceEEEeeeccCCCcceEEEEeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHh
Q 012172 233 LNHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEA 310 (469)
Q Consensus 233 Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~ 310 (469)
+.++.++++++++-+. .|+|.++|+.+.+.++++.
T Consensus 131 l~~~~~~~~~~t~~~~-------------------------------------------~~~g~yi~~~~~~~~~l~~ 165 (200)
T cd02508 131 LDFHIESGADITVVYK-------------------------------------------ASMGIYIFSKDLLIELLEE 165 (200)
T ss_pred HHHHHHcCCCEEEEEh-------------------------------------------hcCEEEEEEHHHHHHHHHH
Confidence 5555544433322111 7999999999999888764
No 65
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.13 E-value=8.8e-10 Score=117.76 Aligned_cols=190 Identities=10% Similarity=0.051 Sum_probs=110.3
Q ss_pred eEEEEcCCCCCcCC----CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCc
Q 012172 81 VVLKLNGGLGTTMG----CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVE 156 (469)
Q Consensus 81 avviLAGG~GTRmg----~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~ 156 (469)
-+||||||.||||+ .+.||.++++.+++|||++.++++..+... .++|.|+..-...+.+.++++. .+ .
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~-----~iviv~~~~~~~~~~~~l~~~~-~~-~ 74 (468)
T TIGR01479 2 IPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCS-----SPLVICNEEHRFIVAEQLREIG-KL-A 74 (468)
T ss_pred EEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCc-----CcEEecCHHHHHHHHHHHHHcC-CC-c
Confidence 36899999999998 457999999955599999999998876421 2334444422234444554321 00 0
Q ss_pred eEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHH--cCCcEEEEEeCcccccc-ccH-HH
Q 012172 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALIS--QGKEYVFAANSDNLGAI-VDL-KI 232 (469)
Q Consensus 157 i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~--~G~~~v~v~n~DNL~~~-~dp-~~ 232 (469)
..++.| ..|.|+|++... . . ..+.+ .+-.+++|+++|++... .+. .+
T Consensus 75 ~~~i~E------------------------p~~~gTa~ai~~-a-a---~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~ 125 (468)
T TIGR01479 75 SNIILE------------------------PVGRNTAPAIAL-A-A---LLAARRNGEDPLLLVLAADHVITDEDAFQAA 125 (468)
T ss_pred ceEEec------------------------ccccCchHHHHH-H-H---HHHHHHHCCCcEEEEecCceeecCHHHHHHH
Confidence 122222 236788877432 1 1 11222 23457999999995432 111 23
Q ss_pred HHHH---HHcCCcceEEEeeeccCCCcceEEEEeC-------Cee-EEEEeccCChhhhhhccccccccEEEEEeEEEeH
Q 012172 233 LNHL---IQNKNEYCMEVTPKTLADVKGGTLISYE-------GKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNL 301 (469)
Q Consensus 233 Lg~~---~~~~~~~~~~v~~k~~~~~~~G~iv~~~-------g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l 301 (469)
+..+ .+.+. ..+-.+..+.+..+||.+...+ +++ +++|..+.+..+ .+-. .+-.+.|+|+++++.
T Consensus 126 l~~~~~~a~~~~-lvtlgi~p~~p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~--~~l~-~g~~~wNsGif~~~~ 201 (468)
T TIGR01479 126 VKLAMPAAAEGK-LVTFGIVPTHPETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQ--AYLE-SGDYYWNSGMFLFRA 201 (468)
T ss_pred HHHHHHHHhcCC-EEEEEecCCCCCCCceEEEeCCccCCCCceEEeEEEECCChHHHH--HHHh-cCCeEEEeeEEEEEH
Confidence 3322 22232 2222244456778999998641 355 578876654332 1111 111268999999999
Q ss_pred HHHHHHHHh
Q 012172 302 KAIKRLVEA 310 (469)
Q Consensus 302 ~~L~~~l~~ 310 (469)
+.|.+.+.+
T Consensus 202 ~~ll~~l~~ 210 (468)
T TIGR01479 202 SRYLAELKK 210 (468)
T ss_pred HHHHHHHHH
Confidence 988877765
No 66
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.02 E-value=5.3e-09 Score=99.93 Aligned_cols=211 Identities=15% Similarity=0.161 Sum_probs=112.9
Q ss_pred eEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEEE
Q 012172 81 VVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTF 160 (469)
Q Consensus 81 avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~f 160 (469)
++|+||||.|||||++.||.++++ .|+|+++|.++++..... .+ .+++-+++...+.+.+.+.. ...+.+.
T Consensus 1 ~aiIlAaG~s~R~~~~~~K~l~~l-~gkpll~~~l~~l~~~~~---~~-~ivVv~~~~~~~~~~~~~~~----~~~~~~~ 71 (217)
T TIGR00453 1 SAVIPAAGRGTRFGSGVPKQYLEL-GGRPLLEHTLDAFLAHPA---ID-EVVVVVSPEDQEFFQKYLVA----RAVPKIV 71 (217)
T ss_pred CEEEEcCcccccCCCCCCccEeEE-CCeEHHHHHHHHHhcCCC---CC-EEEEEEChHHHHHHHHHhhc----CCcEEEe
Confidence 468999999999999889999999 999999999999987521 01 23443333222333333321 0011111
Q ss_pred EecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHc-CCcEEEEEeCcc-ccccccH-HHHHHHH
Q 012172 161 NQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQ-GKEYVFAANSDN-LGAIVDL-KILNHLI 237 (469)
Q Consensus 161 ~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~-G~~~v~v~n~DN-L~~~~dp-~~Lg~~~ 237 (469)
+.|.+ -. .++...|... ..+++++.++|. +...-.. .++..+.
T Consensus 72 ----------------------------~~~~~-~~-----~sl~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~ 117 (217)
T TIGR00453 72 ----------------------------AGGDT-RQ-----DSVRNGLKALKDAEWVLVHDAARPFVPKELLDRLLEALR 117 (217)
T ss_pred ----------------------------CCCch-HH-----HHHHHHHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHh
Confidence 12221 11 1122223222 467999999999 8765442 2222222
Q ss_pred HcCCcceEEEeeeccCCCcceEEEE-eCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccccc
Q 012172 238 QNKNEYCMEVTPKTLADVKGGTLIS-YEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKM 315 (469)
Q Consensus 238 ~~~~~~~~~v~~k~~~~~~~G~iv~-~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~l 315 (469)
. .+...-+++.. .|+... .+|.+ .++| . ..+..+|+ .++|+...|.+++..
T Consensus 118 ~--~~~~~~~~~~~-----~~v~~~~~~g~~~~~~~-------r-------~~~~~~~~-p~~f~~~~l~~~~~~----- 170 (217)
T TIGR00453 118 K--AGAAILALPVA-----DTLKRVEADGFIVETVD-------R-------EGLWAAQT-PQAFRTELLKKALAR----- 170 (217)
T ss_pred h--CCcEEEeEecc-----ceEEEEcCCCceeecCC-------h-------HHeEEEeC-CCcccHHHHHHHHHH-----
Confidence 2 23323223221 232221 23533 2444 1 34667788 589999999998864
Q ss_pred ccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHH
Q 012172 316 EIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSD 371 (469)
Q Consensus 316 p~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~ 371 (469)
. +++ + +.+.....-+...-.++..++++.+.+ .|+++.||..+++.
T Consensus 171 --~-~~~---~---~~~~d~~~~~~~~g~~i~~~~~~~~~~-~I~~~~Dl~~ae~~ 216 (217)
T TIGR00453 171 --A-KEE---G---FEITDDASAVEKLGGKVALVEGDALNF-KITTPEDLALAEAL 216 (217)
T ss_pred --H-Hhc---C---CCCCcHHHHHHHcCCCeEEEecCcccc-ccCCHHHHHHHHHh
Confidence 1 111 1 111100111111223444555554444 99999999998864
No 67
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=98.91 E-value=1e-08 Score=107.05 Aligned_cols=251 Identities=21% Similarity=0.239 Sum_probs=157.3
Q ss_pred CCC-CCCccccccC-----CCCchHHHHHHHHHHhhhhcCCcccEEEecCCCCh-HHHHHHHHH----h---cCCCCceE
Q 012172 93 MGC-TGPKSVIEVR-----NGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTH-DDTSKIIEK----Y---SKSNVEIH 158 (469)
Q Consensus 93 mg~-~~PK~l~~v~-----~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~-e~t~~~~~~----~---~g~~~~i~ 158 (469)
|++ ..||+|++.. ...||=+|++|.++.....--+++++-| |+ .| +..++.+++ | .+-.-+|.
T Consensus 161 LnYg~lPKGLl~FH~Y~~~~rTp~EEHL~Eaa~Ya~~~g~~~lHFTV--S~-eH~~~F~~~~~~~~~~~e~~~~v~f~Is 237 (513)
T PF14134_consen 161 LNYGNLPKGLLPFHKYPDGIRTPFEEHLVEAALYAKSNGKANLHFTV--SP-EHLDLFKKEVEEVKPKYEKKYGVKFEIS 237 (513)
T ss_pred CCCCCCCceeeecccCCCCCcCcHHHHHHHHHHHHhcCCeEEEEEee--CH-HHHHHHHHHHHHHHHHHHHhhCceEEEE
Confidence 444 6799998862 4688999999999988766236789988 76 44 333444433 1 12234588
Q ss_pred EEEecCc---ceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcccc-ccccH----
Q 012172 159 TFNQSQY---PRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLG-AIVDL---- 230 (469)
Q Consensus 159 ~f~Q~~~---P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~-~~~dp---- 230 (469)
|-.|... -+++.++...... ++++...|.|||-+ ++.|.+...+.|||=|+||.+ ...-.
T Consensus 238 fS~Qk~sTDTIAv~~dN~pFR~~---dG~LlFRPgGHGAL---------ieNLN~ldaDiIFIKNIDNVvpd~~k~~t~~ 305 (513)
T PF14134_consen 238 FSEQKPSTDTIAVDPDNTPFRNE---DGSLLFRPGGHGAL---------IENLNDLDADIIFIKNIDNVVPDRLKEETVK 305 (513)
T ss_pred ecccCCCCCeeEECCCCCccCCC---CCCEEeCCCcchHH---------HhhhccccCCEEEEeCccccCCcccchhHHH
Confidence 8888752 2445554433332 47889999999977 456666777899999999944 22211
Q ss_pred ---HHHHHHHHc-------------C-------------------------------------------CcceEEEeeec
Q 012172 231 ---KILNHLIQN-------------K-------------------------------------------NEYCMEVTPKT 251 (469)
Q Consensus 231 ---~~Lg~~~~~-------------~-------------------------------------------~~~~~~v~~k~ 251 (469)
.+-|.+++- + -++-++-.-|
T Consensus 306 yKk~LaG~L~~lQ~~~F~yl~~L~~~~~~~~~l~ei~~Fl~~~L~~~~~~~~~~~~~~~~~~yL~~kLnRPiRVCGMVk- 384 (513)
T PF14134_consen 306 YKKILAGKLLELQEKIFKYLKLLDKGKYSEEELEEIKDFLEEELNIKLPDDFKKLSDEEKIEYLKEKLNRPIRVCGMVK- 384 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCcHHHHhhCHHHHHHHHHHHcCCCceeeeccc-
Confidence 222333211 0 1111111112
Q ss_pred cCCCcce--EEEE-eCCe--eEEEEeccCC---hhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccccccCCCc
Q 012172 252 LADVKGG--TLIS-YEGK--VQLLEIAQVP---DEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKE 323 (469)
Q Consensus 252 ~~~~~~G--~iv~-~~g~--~~ivEy~~~~---~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~~~n~K~ 323 (469)
+..+.|| -.++ .||. ++|||.+|++ +++..-|+ .-..||--.+++.+..++. ...+|+-++++++
T Consensus 385 NeGEPGGGPFwv~~~dG~~SLQIvEssQId~~~~~q~~if~---~~THFNPVDLVCgvkdykG----~kFdL~~fvD~~t 457 (513)
T PF14134_consen 385 NEGEPGGGPFWVKNEDGTVSLQIVESSQIDMSNPEQKEIFK---NSTHFNPVDLVCGVKDYKG----EKFDLPDFVDPNT 457 (513)
T ss_pred cCCCCCCCCeEEECCCCCEeeeeehhhhcCCCCHHHHHHHH---cCCCCCccceEeeccCCCC----CcCCchhccCCCC
Confidence 3344444 3344 4786 4899999984 45544453 3356777777777776542 2345665555554
Q ss_pred -------CCCcc--eehhHHHhhhHhhhcccceeEeecCccccccCCchhHHH
Q 012172 324 -------VDGIK--VLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLL 367 (469)
Q Consensus 324 -------~~g~~--~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~ 367 (469)
.+|.. +..|.-.+.-+|..+ +.++|+||-.-|.|||+.+||+.
T Consensus 458 gFIs~KSk~Gk~LKAlELPGLWNGaMa~W-nTvFVEVPl~TFNPVKTVnDLLr 509 (513)
T PF14134_consen 458 GFISEKSKNGKELKALELPGLWNGAMADW-NTVFVEVPLITFNPVKTVNDLLR 509 (513)
T ss_pred ceeeecCCCCccchhhccCCcccchhcCC-ceEEEEeccccCCCccchhhhcc
Confidence 34544 455556677788885 67789999999999999999875
No 68
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=98.90 E-value=2.8e-08 Score=95.20 Aligned_cols=130 Identities=12% Similarity=0.151 Sum_probs=84.3
Q ss_pred eEEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhc-CC--C
Q 012172 81 VVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYS-KS--N 154 (469)
Q Consensus 81 avviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~-g~--~ 154 (469)
-+|+||||.||||+ ...||.|+|+ .|+|++++.++.+.+.+-+ .+++.++....+.++++++++. .. .
T Consensus 2 ~aVILAgG~g~R~~plt~~~pK~Llpv-~g~pli~~~l~~l~~~g~~-----~iivv~~~~~~~~i~~~l~~~~~~~~~~ 75 (214)
T cd04198 2 QAVILAGGGGSRLYPLTDNIPKALLPV-ANKPMIWYPLDWLEKAGFE-----DVIVVVPEEEQAEISTYLRSFPLNLKQK 75 (214)
T ss_pred EEEEEeCCCCCcCCccccCCCcccCEE-CCeeHHHHHHHHHHHCCCC-----eEEEEECHHHHHHHHHHHHhcccccCcc
Confidence 36789999999998 4789999999 9999999999999885422 3344445433356777776542 11 1
Q ss_pred CceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHH
Q 012172 155 VEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILN 234 (469)
Q Consensus 155 ~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg 234 (469)
..+.++. ...+.|+||+....... + .+.++|.++|.+....-..++.
T Consensus 76 ~~~~~~~------------------------~~~~~gt~~al~~~~~~-----i----~~d~lv~~~D~i~~~~l~~~l~ 122 (214)
T cd04198 76 LDEVTIV------------------------LDEDMGTADSLRHIRKK-----I----KKDFLVLSCDLITDLPLIELVD 122 (214)
T ss_pred eeEEEec------------------------CCCCcChHHHHHHHHhh-----c----CCCEEEEeCccccccCHHHHHH
Confidence 1111111 12368899986554431 1 3568999999765542235666
Q ss_pred HHHHcCCcceEEEee
Q 012172 235 HLIQNKNEYCMEVTP 249 (469)
Q Consensus 235 ~~~~~~~~~~~~v~~ 249 (469)
.+..+++.+++.+.+
T Consensus 123 ~h~~~~~~~t~~~~~ 137 (214)
T cd04198 123 LHRSHDASLTVLLYP 137 (214)
T ss_pred HHhccCCcEEEEEec
Confidence 666667777665544
No 69
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=98.88 E-value=9.3e-08 Score=92.58 Aligned_cols=223 Identities=9% Similarity=0.095 Sum_probs=124.7
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcc-cEEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNV-PLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~i-plviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
++++||||||.++||+ +|.|+++ .|+|+++|.++++.+.. .+ .+++.| . ++.+.++++.+ .+
T Consensus 2 ~~~aiIlA~g~s~R~~---~K~l~~i-~GkPli~~~i~~l~~~~-----~~~~ivv~t-~--~~~i~~~~~~~-----~~ 64 (238)
T PRK13368 2 KVVVVIPARYGSSRLP---GKPLLDI-LGKPMIQHVYERAAQAA-----GVEEVYVAT-D--DQRIEDAVEAF-----GG 64 (238)
T ss_pred cEEEEEecCCCCCCCC---CCccCcc-CCcCHHHHHHHHHHhcC-----CCCeEEEEC-C--hHHHHHHHHHc-----CC
Confidence 5789999999999996 5999999 99999999999998862 12 334433 2 47788888653 12
Q ss_pred EEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHH
Q 012172 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNH 235 (469)
Q Consensus 158 ~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~ 235 (469)
.++.+. ...+.|++++..+ +...+.+++++.++|+ +....+. .++..
T Consensus 65 ~v~~~~----------------------~~~~~g~~~~~~a---------~~~~~~d~~lv~~~D~P~i~~~~i~~l~~~ 113 (238)
T PRK13368 65 KVVMTS----------------------DDHLSGTDRLAEV---------MLKIEADIYINVQGDEPMIRPRDIDTLIQP 113 (238)
T ss_pred eEEecC----------------------ccCCCccHHHHHH---------HHhCCCCEEEEEcCCcCcCCHHHHHHHHHH
Confidence 222211 0113455554322 2222557899999999 7765553 33444
Q ss_pred HHHcCC-cceEEEeeecc-----CCCcceEEEEeCCee-EEEEec-cCChhhhhhccccccccEEEEEeEEEeHHHHHHH
Q 012172 236 LIQNKN-EYCMEVTPKTL-----ADVKGGTLISYEGKV-QLLEIA-QVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRL 307 (469)
Q Consensus 236 ~~~~~~-~~~~~v~~k~~-----~~~~~G~iv~~~g~~-~ivEy~-~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~ 307 (469)
+...+. .+.+.+.+... ++..+|+....+|++ .+.|.. ..+..+ .......|+|+|+|+.+.+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~v~~~~~~~~~~~~~~------~~~~~~~n~giy~~~~~~l~~~ 187 (238)
T PRK13368 114 MLDDPSINVATLCAPISTEEEFESPNVVKVVVDKNGDALYFSRSPIPSRRDG------ESARYLKHVGIYAFRRDVLQQF 187 (238)
T ss_pred HHHCCCccceeEEEEcCCHHHhcCcCCCEEEECCCCCEEEeeCCCCCCCCCC------CCCceeEEEEEEEeCHHHHHHH
Confidence 433333 32223332211 244455555456776 355432 111110 0112367999999999998874
Q ss_pred HHhcccccccccCCCcCCCcceehhHH-HhhhHhhhcccceeEeecCccccccCCchhHHHHHH
Q 012172 308 VEADALKMEIIPNPKEVDGIKVLQLET-AAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQS 370 (469)
Q Consensus 308 l~~~~~~lp~~~n~K~~~g~~~iqle~-~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~ 370 (469)
+. ... .+. -.+|. .....+....++.++. ....+.-|.+..|+..++.
T Consensus 188 -~~-------~~~-----~~~-~~~~~~~~~~~~~~g~~v~~~~-~~~~~~DI~t~~Dl~~a~~ 236 (238)
T PRK13368 188 -SQ-------LPE-----TPL-EQIESLEQLRALEHGEKIRMVE-VAATSIGVDTPEDLERVRA 236 (238)
T ss_pred -Hc-------CCC-----Chh-hhhhhHHHHHHHHCCCceEEEE-eCCCCCCCCCHHHHHHHHH
Confidence 21 000 000 00111 1111222222344444 3446899999999998875
No 70
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=98.82 E-value=1.5e-07 Score=89.92 Aligned_cols=216 Identities=13% Similarity=0.116 Sum_probs=123.2
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCccc-EEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVP-LLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~ip-lviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
++++|+||||.|+||+ .|.++++ .|+||++|.++++.+... +. +++- . .++.+.+++.++. ..
T Consensus 1 ~~~~iIlA~G~s~R~~---~K~l~~l-~Gkpll~~~l~~l~~~~~-----~~~IvV~--~-~~~~i~~~~~~~~---~~- 64 (223)
T cd02513 1 KILAIIPARGGSKGIP---GKNIRPL-GGKPLIAWTIEAALESKL-----FDRVVVS--T-DDEEIAEVARKYG---AE- 64 (223)
T ss_pred CeEEEEecCCCCCCCC---Ccccchh-CCccHHHHHHHHHHhCCC-----CCEEEEE--C-CcHHHHHHHHHhC---CC-
Confidence 5689999999999996 5999999 999999999999987641 22 3442 2 3466666665421 10
Q ss_pred EEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHc--CCcEEEEEeCcc-ccccccH-HHH
Q 012172 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQ--GKEYVFAANSDN-LGAIVDL-KIL 233 (469)
Q Consensus 158 ~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~--G~~~v~v~n~DN-L~~~~dp-~~L 233 (469)
..+... .....-..|.++.+... ++.+.+. +.++++++++|+ +....+. .++
T Consensus 65 ~~~~~~-------------------~~~~~~~~~~~~~i~~~-----l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i 120 (223)
T cd02513 65 VPFLRP-------------------AELATDTASSIDVILHA-----LDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAI 120 (223)
T ss_pred ceeeCC-------------------hHHCCCCCCcHHHHHHH-----HHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHH
Confidence 111111 00000011333332221 2333332 357999999999 8776553 445
Q ss_pred HHHHHcCCcceEEEeeeccCCCcceEEEEeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhccc
Q 012172 234 NHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADAL 313 (469)
Q Consensus 234 g~~~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~ 313 (469)
..+...+.+..+.+.+....+ ..+.....+| ...+-+.+-. ....++.......|.+.|+++.+.+.+....
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~---~~~~q~~~~~~~~n~~~y~~~~~~~~~~~~~--- 192 (223)
T cd02513 121 ELLLSEGADSVFSVTEFHRFP-WRALGLDDNG-LEPVNYPEDK---RTRRQDLPPAYHENGAIYIAKREALLESNSF--- 192 (223)
T ss_pred HHHHhCCCCEEEEEEecCcCc-HHheeeccCC-ceeccCcccc---cCCcCCChhHeeECCEEEEEEHHHHHhcCCc---
Confidence 555555667666665543332 2222222334 3222221100 0011112344567999999999988653110
Q ss_pred ccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHH
Q 012172 314 KMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQS 370 (469)
Q Consensus 314 ~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~ 370 (469)
++ .++..+.++..+-.-|++..|+..+|.
T Consensus 193 ----------------------~g------~~~~~~~~~~~~~~dI~~~~D~~~ae~ 221 (223)
T cd02513 193 ----------------------FG------GKTGPYEMPRERSIDIDTEEDFELAEA 221 (223)
T ss_pred ----------------------cC------CCeEEEEeCccceeCCCCHHHHHHHHH
Confidence 11 344456677778899999999988875
No 71
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=98.81 E-value=1.6e-07 Score=90.49 Aligned_cols=216 Identities=12% Similarity=0.139 Sum_probs=115.3
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcc-cEEEecCCCCh-HHHHHHHHHhcCCCC
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNV-PLLLMNSFNTH-DDTSKIIEKYSKSNV 155 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~i-plviMtS~~t~-e~t~~~~~~~~g~~~ 155 (469)
.++.+||||||.|||||+..||.++++ .|+|+++|.++++.... .+ .+++-|+. .. +.+.+.+... . .
T Consensus 2 ~~~~~iILAaG~s~R~g~~~~K~l~~~-~g~pli~~~l~~l~~~~-----~~~~ivvv~~~-~~~~~~~~~~~~~--~-~ 71 (227)
T PRK00155 2 MMVYAIIPAAGKGSRMGADRPKQYLPL-GGKPILEHTLEAFLAHP-----RIDEIIVVVPP-DDRPDFAELLLAK--D-P 71 (227)
T ss_pred CceEEEEEcCccccccCCCCCceeeEE-CCEEHHHHHHHHHHcCC-----CCCEEEEEeCh-HHHHHHHHHhhcc--C-C
Confidence 367899999999999999899999999 99999999999998753 12 34444333 22 2222211100 0 0
Q ss_pred ceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHH-cCCcEEEEEeCcc-ccccccH-HH
Q 012172 156 EIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALIS-QGKEYVFAANSDN-LGAIVDL-KI 232 (469)
Q Consensus 156 ~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~-~G~~~v~v~n~DN-L~~~~dp-~~ 232 (469)
.+. +.+.|.+ -..++ ...+.. ...+++++..+|. +....+. .+
T Consensus 72 ~~~----------------------------~~~~~~~-~~~sv-----~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~l 117 (227)
T PRK00155 72 KVT----------------------------VVAGGAE-RQDSV-----LNGLQALPDDDWVLVHDAARPFLTPDDIDRL 117 (227)
T ss_pred ceE----------------------------EeCCcch-HHHHH-----HHHHHhCCCCCEEEEccCccCCCCHHHHHHH
Confidence 011 1122222 11122 122221 1346899999999 8776442 33
Q ss_pred HHHHHHcCCcceEEEeeeccCCCcceEEEEeCCee-EEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhc
Q 012172 233 LNHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEAD 311 (469)
Q Consensus 233 Lg~~~~~~~~~~~~v~~k~~~~~~~G~iv~~~g~~-~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~ 311 (469)
+..+... +...-+.+-.+ .++++ ..+|.+ .++| . ..+...|+ .++|+.+.|.+++..
T Consensus 118 i~~~~~~--~~~~~~~~~~~---~~~~v-~~~g~~~~~~~------r--------~~~~~~~~-p~~f~~~~l~~~~~~- 175 (227)
T PRK00155 118 IEAAEET--GAAILAVPVKD---TIKRS-DDGGGIVDTPD------R--------SGLWAAQT-PQGFRIELLREALAR- 175 (227)
T ss_pred HHHHhhC--CCEEEEEeccc---cEEEE-cCCCceeecCC------h--------HHheeeeC-CccchHHHHHHHHHH-
Confidence 3333322 22222322211 12333 223433 1222 1 22455666 789999999999864
Q ss_pred ccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHH
Q 012172 312 ALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLY 373 (469)
Q Consensus 312 ~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~ 373 (469)
..+ + +-+.......+. +.-.++..+..+ .+...|++..||..+|+.++
T Consensus 176 ------~~~-~---~~~~~d~~~~~~---~~~~~i~~~~~~-~~~~~Idt~~Dl~~ae~~~~ 223 (227)
T PRK00155 176 ------ALA-E---GKTITDDASAVE---RLGKPVRLVEGR-YDNIKITTPEDLALAEAILK 223 (227)
T ss_pred ------HHh-c---CCCcCcHHHHHH---HcCCCeEEEecC-cccccCCCHHHHHHHHHHHH
Confidence 111 1 112211111111 111234444433 45559999999999988765
No 72
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=98.78 E-value=5.5e-08 Score=88.18 Aligned_cols=99 Identities=19% Similarity=0.382 Sum_probs=65.8
Q ss_pred EEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEEEE
Q 012172 82 VLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFN 161 (469)
Q Consensus 82 vviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~f~ 161 (469)
+||||||+|+|||. ||.|+++ +|+||++++++++...+.+ ++++.+.. +++.+++..+ .+.++.
T Consensus 1 ~vILa~G~s~Rmg~--~K~l~~i-~g~~li~~~l~~l~~~~~~-----~Ivvv~~~---~~~~~~~~~~-----~~~~v~ 64 (160)
T PF12804_consen 1 AVILAAGKSSRMGG--PKALLPI-GGKPLIERVLEALREAGVD-----DIVVVTGE---EEIYEYLERY-----GIKVVV 64 (160)
T ss_dssp EEEEESSSCGGGTS--CGGGSEE-TTEEHHHHHHHHHHHHTES-----EEEEEEST---HHHHHHHTTT-----TSEEEE
T ss_pred CEEECCcCcccCCC--CccceeE-CCccHHHHHHHHhhccCCc-----eEEEecCh---HHHHHHHhcc-----CceEEE
Confidence 58999999999995 9999999 9999999999999998522 45554443 4555555432 244333
Q ss_pred ecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHc-CCcEEEEEeCcc-cccc
Q 012172 162 QSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQ-GKEYVFAANSDN-LGAI 227 (469)
Q Consensus 162 Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~-G~~~v~v~n~DN-L~~~ 227 (469)
.. +.+ .|...+|. ..+... +.++++|..+|. +...
T Consensus 65 ~~-------------------------~~~-~G~~~sl~-----~a~~~~~~~~~vlv~~~D~p~~~~ 101 (160)
T PF12804_consen 65 DP-------------------------EPG-QGPLASLL-----AALSQLPSSEPVLVLPCDQPFLSP 101 (160)
T ss_dssp -S-------------------------TSS-CSHHHHHH-----HHHHTSTTSSEEEEEETTETTS-H
T ss_pred ec-------------------------ccc-CChHHHHH-----HHHHhcccCCCcEEEeCCccccCH
Confidence 32 112 23322332 334433 678999999999 7544
No 73
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=98.69 E-value=2.7e-07 Score=87.98 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=38.4
Q ss_pred eeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhh
Q 012172 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLN 122 (469)
Q Consensus 80 ~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~ 122 (469)
+++|+||||.|||||...||.++++ .|+|||++.++++..+.
T Consensus 1 ~~~vILAaG~s~R~~~~~~K~l~~i-~Gkpll~~~i~~l~~~~ 42 (218)
T cd02516 1 VAAIILAAGSGSRMGADIPKQFLEL-GGKPVLEHTLEAFLAHP 42 (218)
T ss_pred CEEEEECCcccccCCCCCCcceeEE-CCeEHHHHHHHHHhcCC
Confidence 4679999999999998889999999 99999999999998763
No 74
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=98.68 E-value=3.1e-07 Score=88.14 Aligned_cols=158 Identities=15% Similarity=0.186 Sum_probs=92.5
Q ss_pred EEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcC----CC
Q 012172 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSK----SN 154 (469)
Q Consensus 82 vviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g----~~ 154 (469)
+|+||||.|+||+. ..||.|+|+ +|+|++++.++.+.+.+-+ .++|.+++ ..+.+.+++.+... ..
T Consensus 3 avIlagg~g~rl~plt~~~pK~llpv-~g~pli~~~l~~l~~~gi~-----~i~vv~~~-~~~~~~~~~~~~~~~~~~~~ 75 (216)
T cd02507 3 AVVLADGFGSRFLPLTSDIPKALLPV-ANVPLIDYTLEWLEKAGVE-----EVFVVCCE-HSQAIIEHLLKSKWSSLSSK 75 (216)
T ss_pred EEEEeCCCccccCccccCCCcccceE-CCEEHHHHHHHHHHHCCCC-----eEEEEeCC-cHHHHHHHHHhcccccccCC
Confidence 57899999999974 789999999 9999999999998875311 34555565 56667777765211 00
Q ss_pred CceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccH-HHH
Q 012172 155 VEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-KIL 233 (469)
Q Consensus 155 ~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp-~~L 233 (469)
..+.. +. .....+.|+|+.... ... ++ .+.+++.++|.+... |+ .++
T Consensus 76 ~~v~~----------------~~------~~~~~~~Gta~~l~~--~~~----~i---~~dflv~~gD~i~~~-~l~~~l 123 (216)
T cd02507 76 MIVDV----------------IT------SDLCESAGDALRLRD--IRG----LI---RSDFLLLSCDLVSNI-PLSELL 123 (216)
T ss_pred ceEEE----------------EE------ccCCCCCccHHHHHH--Hhh----cC---CCCEEEEeCCEeecC-CHHHHH
Confidence 01110 00 001135677776422 111 11 357899999996654 43 334
Q ss_pred HH--HHHcCCcceEEEeeeccC--------CCcceEEEEeC--CeeEEEEeccCChh
Q 012172 234 NH--LIQNKNEYCMEVTPKTLA--------DVKGGTLISYE--GKVQLLEIAQVPDE 278 (469)
Q Consensus 234 g~--~~~~~~~~~~~v~~k~~~--------~~~~G~iv~~~--g~~~ivEy~~~~~e 278 (469)
-. ....+.++.+.+.....+ ....+.++.++ ++..++.+.+-+++
T Consensus 124 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~ 180 (216)
T cd02507 124 EERRKKDKNAIATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDE 180 (216)
T ss_pred HHHHhhCcccceEEEEEeccCCCCccccccCCCCcEEEEcCCCCceEEEechhhcCc
Confidence 32 233355555544332221 33456666543 45778888765443
No 75
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=98.62 E-value=3.2e-07 Score=86.15 Aligned_cols=61 Identities=25% Similarity=0.371 Sum_probs=48.8
Q ss_pred eEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHH
Q 012172 81 VVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEK 149 (469)
Q Consensus 81 avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~ 149 (469)
.+|+||||+|||||. .||.++++ .|+||++++++++....-. .+++.+++ ..+.++.++++
T Consensus 2 ~aIILAgG~gsRmg~-~~K~Ll~i-~GkplI~~vi~~l~~~~i~-----~I~Vv~~~-~~~~~~~~l~~ 62 (183)
T TIGR00454 2 DALIMAGGKGTRLGG-VEKPLIEV-CGRCLIDHVLSPLLKSKVN-----NIIIATSP-HTPKTEEYINS 62 (183)
T ss_pred eEEEECCccCccCCC-CCceEeEE-CCEEHHHHHHHHHHhCCCC-----EEEEEeCC-CHHHHHHHHhh
Confidence 578999999999986 79999999 8999999999999875421 34455565 56778888764
No 76
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.61 E-value=3.9e-06 Score=80.68 Aligned_cols=66 Identities=18% Similarity=0.366 Sum_probs=55.5
Q ss_pred eeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhc
Q 012172 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYS 151 (469)
Q Consensus 80 ~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~ 151 (469)
..+||||||.|||||-+.||.|.++ .|++++++.++++.+..-+ -+|+.|+.+..+.+.+++.+|.
T Consensus 4 ~kavILAAG~GsRlg~~~PK~Lvev-~gr~ii~~~i~~L~~~gi~-----e~vvV~~g~~~~lve~~l~~~~ 69 (239)
T COG1213 4 MKAVILAAGFGSRLGPDIPKALVEV-GGREIIYRTIENLAKAGIT-----EFVVVTNGYRADLVEEFLKKYP 69 (239)
T ss_pred eeEEEEecccccccCCCCCchhhhc-CCeEeHHHHHHHHHHcCCc-----eEEEEeccchHHHHHHHHhcCC
Confidence 4579999999999999999999999 8999999999999887532 4566666668888888888763
No 77
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=98.52 E-value=8.6e-06 Score=79.54 Aligned_cols=225 Identities=10% Similarity=0.075 Sum_probs=116.2
Q ss_pred EEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEEEE
Q 012172 82 VLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFN 161 (469)
Q Consensus 82 vviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~f~ 161 (469)
+||+|+|.||||+ +|.++++ .|+|+++|.++++....- + .+++-|. ++.+.+.++++. +.+..
T Consensus 2 ~iIpA~g~s~R~~---~K~L~~l-~GkPli~~~le~~~~~~~----d-~VvVvt~---~~~i~~~~~~~g-----~~~v~ 64 (238)
T TIGR00466 2 VIIPARLASSRLP---GKPLEDI-FGKPMIVHVAENANESGA----D-RCIVATD---DESVAQTCQKFG-----IEVCM 64 (238)
T ss_pred EEEecCCCCCCCC---CCeeccc-CCcCHHHHHHHHHHhCCC----C-eEEEEeC---HHHHHHHHHHcC-----CEEEE
Confidence 6899999999995 8999999 999999999999875421 1 2344332 456666665431 11111
Q ss_pred ecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccH-HHHHHHHHc
Q 012172 162 QSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHLIQN 239 (469)
Q Consensus 162 Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp-~~Lg~~~~~ 239 (469)
-. ...+.|+..+..++ ..+.....+++++.++|. |+..... .++..+...
T Consensus 65 ~~----------------------~~~~~Gt~r~~~~~------~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~ 116 (238)
T TIGR00466 65 TS----------------------KHHNSGTERLAEVV------EKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATK 116 (238)
T ss_pred eC----------------------CCCCChhHHHHHHH------HHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcC
Confidence 00 01133444343222 111111346899999999 8765432 223333223
Q ss_pred CCcceEEEeeeccCCC----cceEEE-EeCCeeE-EEEeccCCh--hhhhhccccc-cccEEEEEeEEEeHHHHHHHHHh
Q 012172 240 KNEYCMEVTPKTLADV----KGGTLI-SYEGKVQ-LLEIAQVPD--EHVNEFKSIE-KFKIFNTNNLWVNLKAIKRLVEA 310 (469)
Q Consensus 240 ~~~~~~~v~~k~~~~~----~~G~iv-~~~g~~~-ivEy~~~~~--e~~~~~~~~~-~~~~~Nt~~~~~~l~~L~~~l~~ 310 (469)
+.+++.-+++..++.+ ....++ ..+|+.- +.. +-+|. +.....+... ...+.|.|+|.++.++|+++..-
T Consensus 117 ~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~alyfsr-~~ip~~R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~ 195 (238)
T TIGR00466 117 NVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYALYFSR-SLIPFDRDFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAW 195 (238)
T ss_pred CCCEEEEeeecCCHHHccCCCceEEEeCCCCeEEEecC-CCCCCCCCcccccccccccceeEEEEEEeCCHHHHHHHHhC
Confidence 3455555555444211 123333 3355431 111 11110 1000000001 12345999999999999998753
Q ss_pred cccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhH
Q 012172 311 DALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDL 365 (469)
Q Consensus 311 ~~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL 365 (469)
....| |..=+||+.-+ +..-.++.++.++...-.+|.|.+||
T Consensus 196 ~~~~l-----------e~~e~leqlr~--le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 196 KPCVL-----------EEIEKLEQLRV--LYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred CCCcc-----------cccchhHHHhh--hhcCCceEEEEeCCCCCCCCCChHHc
Confidence 11111 12223343322 33333445555553323589999886
No 78
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=98.47 E-value=3.8e-07 Score=88.30 Aligned_cols=67 Identities=10% Similarity=0.165 Sum_probs=49.5
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHh
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKY 150 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~ 150 (469)
++++|+||||.|+|||++.||.++++ .|+|+|+|.++++..... --.+++.++........++++++
T Consensus 2 ~~~~iIlAaG~g~R~g~~~~K~l~~l-~gkpll~~~i~~~~~~~~----~~~ivVv~~~~~~~~~~~~~~~~ 68 (230)
T PRK13385 2 NYELIFLAAGQGKRMNAPLNKMWLDL-VGEPIFIHALRPFLADNR----CSKIIIVTQAQERKHVQDLMKQL 68 (230)
T ss_pred ceEEEEECCeeccccCCCCCcceeEE-CCeEHHHHHHHHHHcCCC----CCEEEEEeChhhHHHHHHHHHhc
Confidence 46889999999999999899999999 999999999999877531 11344444543334444555543
No 79
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.37 E-value=2.1e-06 Score=79.09 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=44.0
Q ss_pred eeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHH
Q 012172 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKI 146 (469)
Q Consensus 80 ~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~ 146 (469)
+++||||||.|||||. ||.++++ .|+||++++++++..... -.+++.|++ .++...++
T Consensus 1 ~~~vIlAgG~s~R~g~--~K~l~~~-~g~~li~~~i~~l~~~~~-----~~i~vv~~~-~~~~~~~~ 58 (186)
T cd04182 1 IAAIILAAGRSSRMGG--NKLLLPL-DGKPLLRHALDAALAAGL-----SRVIVVLGA-EADAVRAA 58 (186)
T ss_pred CeEEEECCCCCCCCCC--CceeCee-CCeeHHHHHHHHHHhCCC-----CcEEEECCC-cHHHHHHH
Confidence 4689999999999986 9999999 999999999999987621 245555554 44444333
No 80
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=4.1e-06 Score=85.16 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=52.4
Q ss_pred ceeEEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhc
Q 012172 79 KLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYS 151 (469)
Q Consensus 79 k~avviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~ 151 (469)
+.-.|++|||-||||- +..||.|+|| .++||+.|.+..+++.+.+ .+-++.| ....+++++.+.++.
T Consensus 9 efqavV~a~~ggt~~p~~~~~~pKaLLPI-gn~PMi~YpL~~L~~~gft---eiiVv~~--e~e~~~i~~al~~~~ 78 (433)
T KOG1462|consen 9 EFQAVVLAGGGGTRMPEVTSRLPKALLPI-GNKPMILYPLNSLEQAGFT---EIIVVVN--EDEKLDIESALGSNI 78 (433)
T ss_pred HhhhheeecCCceechhhhhhcchhhccc-CCcceeeeehhHHHhcCCe---EEEEEec--HHHHHHHHHHHhcCC
Confidence 4557899999999994 6889999999 9999999999999998755 4555553 334557778886643
No 81
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=98.36 E-value=6.9e-07 Score=81.99 Aligned_cols=60 Identities=23% Similarity=0.418 Sum_probs=49.9
Q ss_pred eEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHH
Q 012172 81 VVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEK 149 (469)
Q Consensus 81 avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~ 149 (469)
.+|+||||+|||||. .=|++++| +||||++++++.++..-. .+.+++ |. .+..|++|+++
T Consensus 2 ~~iiMAGGrGtRmg~-~EKPlleV-~GkpLI~~v~~al~~~~d----~i~v~i--sp-~tp~t~~~~~~ 61 (177)
T COG2266 2 MAIIMAGGRGTRMGR-PEKPLLEV-CGKPLIDRVLEALRKIVD----EIIVAI--SP-HTPKTKEYLES 61 (177)
T ss_pred ceEEecCCcccccCC-CcCcchhh-CCccHHHHHHHHHHhhcC----cEEEEe--CC-CCHhHHHHHHh
Confidence 579999999999997 67889999 999999999999988432 344444 88 67889999976
No 82
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=98.31 E-value=3.8e-06 Score=77.97 Aligned_cols=48 Identities=25% Similarity=0.326 Sum_probs=39.5
Q ss_pred EEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCC
Q 012172 82 VLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSF 137 (469)
Q Consensus 82 vviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~ 137 (469)
+||||||.||||| .||.++++ .|+||++++++++.+..- -.+++.+++
T Consensus 2 ~iIla~G~s~R~g--~~K~ll~~-~g~pll~~~i~~l~~~~~-----~~iivv~~~ 49 (188)
T TIGR03310 2 AIILAAGLSSRMG--QNKLLLPY-KGKTILEHVVDNALRLFF-----DEVILVLGH 49 (188)
T ss_pred eEEECCCCcccCC--CCceeccc-CCeeHHHHHHHHHHHcCC-----CcEEEEeCC
Confidence 6899999999998 59999999 999999999999886531 245555555
No 83
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=98.27 E-value=6.5e-06 Score=76.17 Aligned_cols=39 Identities=26% Similarity=0.506 Sum_probs=35.7
Q ss_pred eeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHh
Q 012172 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121 (469)
Q Consensus 80 ~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l 121 (469)
+++||||||+|+|||. ||.++++ .|+||++++++++...
T Consensus 1 ~~~iILAgG~s~Rmg~--~K~ll~~-~g~~ll~~~i~~l~~~ 39 (181)
T cd02503 1 ITGVILAGGKSRRMGG--DKALLEL-GGKPLLEHVLERLKPL 39 (181)
T ss_pred CcEEEECCCccccCCC--CceeeEE-CCEEHHHHHHHHHHhh
Confidence 3579999999999996 9999999 8999999999998875
No 84
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.25 E-value=3.5e-05 Score=77.24 Aligned_cols=194 Identities=17% Similarity=0.230 Sum_probs=109.1
Q ss_pred eeEEEEcCCCCCcC----CCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCC
Q 012172 80 LVVLKLNGGLGTTM----GCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNV 155 (469)
Q Consensus 80 ~avviLAGG~GTRm----g~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~ 155 (469)
+.-||||||.|||| +...||-.+++.+++||||..++++..+... .=|++| |+..-...+++-+.+-
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~---~~~~vV-tne~~~f~v~eql~e~----- 72 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDI---EEPLVV-TNEKYRFIVKEQLPEI----- 72 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCc---cCeEEE-eCHHHHHHHHHHHhhh-----
Confidence 45689999999999 5688999999988999999999999887532 345555 3331112222222210
Q ss_pred ceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCccccccccHHHHHH
Q 012172 156 EIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNH 235 (469)
Q Consensus 156 ~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~dp~~Lg~ 235 (469)
|.=...+ ++++ |-|-=-+ +...-+.+....+.|-.-+.|+-.|-+++.. ..|...
T Consensus 73 ----------~~~~~~~-illE-----------P~gRnTA--pAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~-~af~~a 127 (333)
T COG0836 73 ----------DIENAAG-IILE-----------PEGRNTA--PAIALAALSATAEGGDALVLVLPSDHVIADE-EAFLNA 127 (333)
T ss_pred ----------hhccccc-eEec-----------cCCCCcH--HHHHHHHHHHHHhCCCcEEEEecCcceeccH-HHHHHH
Confidence 0000111 2222 3332211 2222223344444553468899999977753 334332
Q ss_pred H------HHcCCcceEEE-eeeccCCCcceEEEEe----C-CeeEEEEeccCChhh-hhhccccccccEEEEEeEEEeHH
Q 012172 236 L------IQNKNEYCMEV-TPKTLADVKGGTLISY----E-GKVQLLEIAQVPDEH-VNEFKSIEKFKIFNTNNLWVNLK 302 (469)
Q Consensus 236 ~------~~~~~~~~~~v-~~k~~~~~~~G~iv~~----~-g~~~ivEy~~~~~e~-~~~~~~~~~~~~~Nt~~~~~~l~ 302 (469)
. ++++ ..+.. +.-+.|..+||-|-.- + +-..|-+.-+=|+.+ ++++-...+| +.|+|+++|+.+
T Consensus 128 v~~A~~~A~~g--~lVTfGI~Pt~PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y-~WNSGmF~Fra~ 204 (333)
T COG0836 128 VKKAEKAAEEG--GIVTFGIPPTRPETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYVESGEY-LWNSGMFLFRAS 204 (333)
T ss_pred HHHHHHHHHcC--CEEEEecCCCCCccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHHHcCce-EeeccceEEEHH
Confidence 2 2233 22322 4456788899987651 1 333333333333322 2223222333 679999999999
Q ss_pred HHHHHHHh
Q 012172 303 AIKRLVEA 310 (469)
Q Consensus 303 ~L~~~l~~ 310 (469)
.+.+-+.+
T Consensus 205 ~~l~e~~~ 212 (333)
T COG0836 205 VFLEELKK 212 (333)
T ss_pred HHHHHHHh
Confidence 98887776
No 85
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=98.21 E-value=4.3e-05 Score=81.84 Aligned_cols=191 Identities=13% Similarity=0.168 Sum_probs=106.1
Q ss_pred ceeEEEEcCCCCCcCCC----CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCC
Q 012172 79 KLVVLKLNGGLGTTMGC----TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSN 154 (469)
Q Consensus 79 k~avviLAGG~GTRmg~----~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~ 154 (469)
++-+||||||.||||-. ..||.++++.+++||||+.++++..+.. .=++++ |+..-.+.+++.+......
T Consensus 5 ~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~----~~~iiv-t~~~~~~~v~~ql~~~~~~- 78 (478)
T PRK15460 5 KLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVEC----ESPVVI-CNEQHRFIVAEQLRQLNKL- 78 (478)
T ss_pred ceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCC----CCcEEE-eCHHHHHHHHHHHHhcCCc-
Confidence 36789999999999972 3699999996678999999999887642 224444 6653334444444331100
Q ss_pred CceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHc--C-CcEEEEEeCccccccccHH
Q 012172 155 VEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQ--G-KEYVFAANSDNLGAIVDLK 231 (469)
Q Consensus 155 ~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~--G-~~~v~v~n~DNL~~~~dp~ 231 (469)
...++++ |-|..-+ +...-+.+ .+.++ + -.-++|+..|.++...+ .
T Consensus 79 ----------------~~~ii~E-----------P~~rnTA--paialaa~-~~~~~~~~~~~~v~vlPaDH~I~d~~-~ 127 (478)
T PRK15460 79 ----------------TENIILE-----------PAGRNTA--PAIALAAL-AAKRHSPESDPLMLVLAADHVIADED-A 127 (478)
T ss_pred ----------------cccEEec-----------CCCCChH--HHHHHHHH-HHHHhcCCCCCeEEEeccccccCCHH-H
Confidence 0122222 2332222 11111111 12222 2 24788999999776532 2
Q ss_pred HHHHH-----HHcCCcceEEE-eeeccCCCcceEEEEe---C-----CeeE---EEEeccCChhhhhhccccccccEEEE
Q 012172 232 ILNHL-----IQNKNEYCMEV-TPKTLADVKGGTLISY---E-----GKVQ---LLEIAQVPDEHVNEFKSIEKFKIFNT 294 (469)
Q Consensus 232 ~Lg~~-----~~~~~~~~~~v-~~k~~~~~~~G~iv~~---~-----g~~~---ivEy~~~~~e~~~~~~~~~~~~~~Nt 294 (469)
|.... ..+. ...+.. +.-+.|..+||=|-.. + +-.. .+|--+.. .+..+-. .+--+.|+
T Consensus 128 F~~~i~~A~~~A~~-~~lvt~GI~Pt~PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~--tA~~yl~-~G~y~WNs 203 (478)
T PRK15460 128 FRAAVRNAMPYAEA-GKLVTFGIVPDLPETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLE--TAQAYVA-SGEYYWNS 203 (478)
T ss_pred HHHHHHHHHHHHhc-CCEEEEecCCCCCCCCCCeEEeCCccccccccCceEeeEEEeCCCHH--HHHHHHH-cCCEEEec
Confidence 32221 1122 333333 6667888999977542 1 2122 34443322 2223322 22225699
Q ss_pred EeEEEeHHHHHHHHHh
Q 012172 295 NNLWVNLKAIKRLVEA 310 (469)
Q Consensus 295 ~~~~~~l~~L~~~l~~ 310 (469)
|+++++.+.+.+.+++
T Consensus 204 GiF~~~a~~~l~~~~~ 219 (478)
T PRK15460 204 GMFLFRAGRYLEELKK 219 (478)
T ss_pred ceeheeHHHHHHHHHH
Confidence 9999999998777765
No 86
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=98.18 E-value=2.1e-06 Score=84.60 Aligned_cols=43 Identities=23% Similarity=0.423 Sum_probs=40.2
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHh
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l 121 (469)
.++++||||||.|||||++.||.++++ .|+|+|+|.++.+..+
T Consensus 23 ~~i~aIILAAG~gsRmg~~~pKqll~l-~Gkpll~~tl~~~~~~ 65 (252)
T PLN02728 23 KSVSVILLAGGVGKRMGANMPKQYLPL-LGQPIALYSLYTFARM 65 (252)
T ss_pred CceEEEEEcccccccCCCCCCcceeEE-CCeEHHHHHHHHHHhC
Confidence 468999999999999999999999999 9999999999998875
No 87
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=98.18 E-value=1.8e-05 Score=82.52 Aligned_cols=44 Identities=9% Similarity=0.185 Sum_probs=40.7
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhh
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLN 122 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~ 122 (469)
.++++|+||||.|||||...||.++++ .|+|+++|.++.+.+..
T Consensus 4 m~v~aIILAAG~GsRmg~~~pKqll~l-~GkPll~~tl~~l~~~~ 47 (378)
T PRK09382 4 SDISLVIVAAGRSTRFSAEVKKQWLRI-GGKPLWLHVLENLSSAP 47 (378)
T ss_pred CcceEEEECCCCCccCCCCCCeeEEEE-CCeeHHHHHHHHHhcCC
Confidence 468899999999999998899999999 99999999999998764
No 88
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=98.17 E-value=1.7e-05 Score=75.34 Aligned_cols=40 Identities=28% Similarity=0.422 Sum_probs=36.6
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHh
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l 121 (469)
++.+||||||+|+|||. +|.++++ .|+|++++.++.+...
T Consensus 7 ~~~~vILAgG~s~Rmg~--~K~ll~~-~g~~ll~~~i~~l~~~ 46 (200)
T PRK02726 7 NLVALILAGGKSSRMGQ--DKALLPW-QGVPLLQRVARIAAAC 46 (200)
T ss_pred CceEEEEcCCCcccCCC--CceeeEE-CCEeHHHHHHHHHHhh
Confidence 67899999999999995 7999999 8999999999999754
No 89
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=98.16 E-value=3.3e-06 Score=81.65 Aligned_cols=64 Identities=19% Similarity=0.344 Sum_probs=47.2
Q ss_pred eeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCccc-EEEecCCCChHHHHHHHHH
Q 012172 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVP-LLLMNSFNTHDDTSKIIEK 149 (469)
Q Consensus 80 ~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~ip-lviMtS~~t~e~t~~~~~~ 149 (469)
+++|+||||.|+|||++.||-.+++ .|+|+|.|.++.+.+.. .+- +++..+....+.+++.+.+
T Consensus 1 V~aIilAaG~G~R~g~~~pKQf~~l-~Gkpvl~~tl~~f~~~~-----~i~~Ivvv~~~~~~~~~~~~~~~ 65 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQFLEL-GGKPVLEYTLEAFLASP-----EIDEIVVVVPPEDIDYVEELLSK 65 (221)
T ss_dssp EEEEEEESS-STCCTSSS-GGGSEE-TTEEHHHHHHHHHHTTT-----TESEEEEEESGGGHHHHHHHHHH
T ss_pred CEEEEeCCccchhcCcCCCCeeeEE-CCeEeHHHHHHHHhcCC-----CCCeEEEEecchhHHHHHHhhcC
Confidence 5799999999999999999999999 99999999999998764 232 3333344334556666554
No 90
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=98.14 E-value=4.3e-06 Score=79.16 Aligned_cols=41 Identities=22% Similarity=0.424 Sum_probs=37.0
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCC-CchHHHHHHHHHHh
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNG-LTFLDLIVIQIENL 121 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~g-ks~L~~~~~~i~~l 121 (469)
.++++||||||+|+||| .||.++++ .| +|+++++++++..+
T Consensus 7 ~~i~~vILAgG~s~RmG--~~K~ll~~-~g~~~ll~~~i~~l~~~ 48 (196)
T PRK00560 7 DNIPCVILAGGKSSRMG--ENKALLPF-GSYSSLLEYQYTRLLKL 48 (196)
T ss_pred cCceEEEECCcccccCC--CCceEEEe-CCCCcHHHHHHHHHHHh
Confidence 36889999999999998 58999999 77 99999999999765
No 91
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=98.11 E-value=8.5e-06 Score=76.31 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=34.2
Q ss_pred eEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHh
Q 012172 81 VVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121 (469)
Q Consensus 81 avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l 121 (469)
++||||||+|+|||. +|.++++ .|+||+++.++.+.+.
T Consensus 2 ~~vILAgG~s~Rmg~--~K~ll~~-~g~~ll~~~i~~~~~~ 39 (190)
T TIGR03202 2 VAIYLAAGQSRRMGE--NKLALPL-GETTLGSASLKTALSS 39 (190)
T ss_pred eEEEEcCCccccCCC--Cceecee-CCccHHHHHHHHHHhC
Confidence 579999999999996 7999999 8999999999887654
No 92
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=98.11 E-value=2.7e-05 Score=72.32 Aligned_cols=39 Identities=21% Similarity=0.451 Sum_probs=35.2
Q ss_pred eeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHH
Q 012172 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIEN 120 (469)
Q Consensus 80 ~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~ 120 (469)
+++|+||||+|||||. .||.++++ .|+||++++++.+..
T Consensus 1 ~~~iILAgG~s~Rmg~-~~K~l~~i-~g~pll~~~l~~l~~ 39 (186)
T TIGR02665 1 ISGVILAGGRARRMGG-RDKGLVEL-GGKPLIEHVLARLRP 39 (186)
T ss_pred CeEEEEcCCccccCCC-CCCceeEE-CCEEHHHHHHHHHHh
Confidence 4689999999999994 39999999 999999999999864
No 93
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=98.06 E-value=3.1e-05 Score=80.47 Aligned_cols=42 Identities=21% Similarity=0.385 Sum_probs=37.6
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHh
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l 121 (469)
.++++|+||||+||||| ..||.++++ .|+||++++++++...
T Consensus 4 ~~i~~VILAgG~s~Rmg-g~~K~ll~i-~Gkpll~~~i~~l~~~ 45 (366)
T PRK14489 4 SQIAGVILAGGLSRRMN-GRDKALILL-GGKPLIERVVDRLRPQ 45 (366)
T ss_pred CCceEEEEcCCcccCCC-CCCCceeEE-CCeeHHHHHHHHHHhh
Confidence 47889999999999997 379999999 8999999999998753
No 94
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=98.04 E-value=9.7e-06 Score=76.74 Aligned_cols=106 Identities=21% Similarity=0.346 Sum_probs=70.9
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCce
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i 157 (469)
..+..||||||+|+|| .+|.++++ .|+|+++|++++++... . .++|. +....+. +... |
T Consensus 3 ~~~~~vILAGG~srRm---~dK~l~~~-~g~~lie~v~~~L~~~~-----~-~vvi~-~~~~~~~---~~~~--g----- 61 (192)
T COG0746 3 TPMTGVILAGGKSRRM---RDKALLPL-NGRPLIEHVIDRLRPQV-----D-VVVIS-ANRNQGR---YAEF--G----- 61 (192)
T ss_pred CCceEEEecCCccccc---ccccccee-CCeEHHHHHHHHhcccC-----C-EEEEe-CCCchhh---hhcc--C-----
Confidence 3678999999999999 89999999 99999999999998874 4 56663 2322221 2211 1
Q ss_pred EEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccHHHHHHH
Q 012172 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDLKILNHL 236 (469)
Q Consensus 158 ~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp~~Lg~~ 236 (469)
.|.+.+ ..+|.| +| .|++..|...+.+|++|.-+|+ +... .++-++
T Consensus 62 -------~~vv~D-----------------~~~~~G----PL--~Gi~~al~~~~~~~~~v~~~D~P~i~~---~lv~~l 108 (192)
T COG0746 62 -------LPVVPD-----------------ELPGFG----PL--AGILAALRHFGTEWVLVLPCDMPFIPP---ELVERL 108 (192)
T ss_pred -------Cceeec-----------------CCCCCC----CH--HHHHHHHHhCCCCeEEEEecCCCCCCH---HHHHHH
Confidence 111110 123332 22 4667777788889999999999 7664 335555
Q ss_pred H
Q 012172 237 I 237 (469)
Q Consensus 237 ~ 237 (469)
.
T Consensus 109 ~ 109 (192)
T COG0746 109 L 109 (192)
T ss_pred H
Confidence 4
No 95
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=97.87 E-value=0.0012 Score=65.12 Aligned_cols=207 Identities=16% Similarity=0.164 Sum_probs=123.6
Q ss_pred EEEEcCCCCCcCCC---CCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhc-------
Q 012172 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYS------- 151 (469)
Q Consensus 82 vviLAGG~GTRmg~---~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~------- 151 (469)
+|+-|+|+|||+=- ..||=|+|| -+||.+|++++.+.+.+-+ .++|.||. ....+.+||....
T Consensus 7 AViPaAGlGTRfLPATKaiPKEMLPI-vdKP~IqYiVeEa~~aGIe-----~i~iVTgr-~K~~IeDhFD~s~ELE~~L~ 79 (291)
T COG1210 7 AVIPAAGLGTRFLPATKAIPKEMLPI-VDKPLIQYIVEEAVAAGIE-----EILIVTGR-GKRAIEDHFDTSYELENTLE 79 (291)
T ss_pred EEEEccCcccccccccccCchhhccc-cCchhHHHHHHHHHHcCCC-----EEEEEecC-CcchHHHhCcCcHHHHHHHH
Confidence 68999999999953 679999999 8899999999999888633 45555665 4445555553211
Q ss_pred ------------C--CCCceEEEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEE
Q 012172 152 ------------K--SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVF 217 (469)
Q Consensus 152 ------------g--~~~~i~~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~ 217 (469)
. ...++.+..|. .|.|-||+.... ..|. |-+.+.
T Consensus 80 ~~~K~~~L~~v~~i~~~~~i~~vRQ~------------------------e~~GLGhAVl~A------~~~v--g~EpFa 127 (291)
T COG1210 80 KRGKRELLEEVRSIPPLVTISFVRQK------------------------EPLGLGHAVLCA------KPFV--GDEPFA 127 (291)
T ss_pred HhCHHHHHHHHHhcccCceEEEEecC------------------------CCCcchhHHHhh------hhhc--CCCceE
Confidence 0 11346666666 379999996432 2343 558777
Q ss_pred EEeCccccccccHHHHHHHH----HcCCcc-eEEEeeeccCCCcceEEE----EeCCeeE---EEEeccCChhhhhhccc
Q 012172 218 AANSDNLGAIVDLKILNHLI----QNKNEY-CMEVTPKTLADVKGGTLI----SYEGKVQ---LLEIAQVPDEHVNEFKS 285 (469)
Q Consensus 218 v~n~DNL~~~~dp~~Lg~~~----~~~~~~-~~~v~~k~~~~~~~G~iv----~~~g~~~---ivEy~~~~~e~~~~~~~ 285 (469)
|+-.|.|+....| .+.-|+ +.+... +++=+++ ..-.+||++- ..+|..+ +||--.. ++
T Consensus 128 VlL~Ddl~~~~~~-~l~qmi~~ye~~g~svi~v~ev~~-e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~--~~------ 197 (291)
T COG1210 128 VLLPDDLVDSEKP-CLKQMIELYEETGGSVIGVEEVPP-EDVSKYGVIDPGEPVEKGVYKVKGMVEKPKP--EE------ 197 (291)
T ss_pred EEeCCeeecCCch-HHHHHHHHHHHhCCcEEEEEECCH-HHCcccceEecCccccCCeEEEEEEEECCCC--CC------
Confidence 8888885554333 333333 233322 2222322 4457899997 2344233 5665421 11
Q ss_pred cccccEEEEEeEEEeHHHHHHHHHhcccccccccCCCcCCC-cceehhHHHhhhHhhhcccceeEeec
Q 012172 286 IEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDG-IKVLQLETAAGAAIRFFDHAIGCNVH 352 (469)
Q Consensus 286 ~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~~~n~K~~~g-~~~iqle~~~~d~~~~~~~~~~v~v~ 352 (469)
..-.+.=.|-|.++-+.... |++ . .+| ...|||..++...++. ..+.++...
T Consensus 198 -APSnlai~GRYil~p~IFd~-L~~----------~--~~G~ggEiQLTDai~~L~~~-~~v~a~~~~ 250 (291)
T COG1210 198 -APSNLAIVGRYVLTPEIFDI-LEE----------T--KPGAGGEIQLTDAIKKLLKK-EPVLAYVFE 250 (291)
T ss_pred -CCcceeeeeeeecCHHHHHH-Hhh----------C--CCCCCCEeeHHHHHHHHHhh-CcEEEEEec
Confidence 11134566778888776543 332 1 112 3578888888776665 455555443
No 96
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=97.83 E-value=8.4e-05 Score=77.30 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=36.3
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHh
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l 121 (469)
++..||||||+|+|||. +|.++++ .|+||++++++.+...
T Consensus 174 ~i~~iILAGG~SsRmG~--~K~ll~~-~Gk~ll~~~l~~l~~~ 213 (369)
T PRK14490 174 PLSGLVLAGGRSSRMGS--DKALLSY-HESNQLVHTAALLRPH 213 (369)
T ss_pred CceEEEEcCCccccCCC--CcEEEEE-CCccHHHHHHHHHHhh
Confidence 55899999999999994 9999999 9999999999999764
No 97
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=97.81 E-value=0.0015 Score=63.14 Aligned_cols=215 Identities=11% Similarity=0.089 Sum_probs=120.2
Q ss_pred EEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEEEE
Q 012172 82 VLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFN 161 (469)
Q Consensus 82 vviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~f~ 161 (469)
+||+|+|.++||+ .|-+.++ .|+|+++|.++++.+... --.+++ +++ ++++.+..+++ | ..+. |.
T Consensus 2 aiIpArG~Skr~~---~Knl~~l-~GkpLi~~ti~~a~~s~~----~d~IvV-std--~~~i~~~a~~~-g--~~v~-~~ 66 (222)
T TIGR03584 2 AIIPARGGSKRIP---RKNIKPF-CGKPMIAYSIEAALNSGL----FDKVVV-STD--DEEIAEVAKSY-G--ASVP-FL 66 (222)
T ss_pred EEEccCCCCCCCC---Cccchhc-CCcCHHHHHHHHHHhCCC----CCEEEE-eCC--CHHHHHHHHHc-C--CEeE-Ee
Confidence 5899999999996 6999999 999999999999987541 112344 233 46677766654 1 1121 11
Q ss_pred ecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHH-cCCcEEEEEeCcc-ccccccH-HHHHHHHH
Q 012172 162 QSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALIS-QGKEYVFAANSDN-LGAIVDL-KILNHLIQ 238 (469)
Q Consensus 162 Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~-~G~~~v~v~n~DN-L~~~~dp-~~Lg~~~~ 238 (469)
- | ..+..--.|..+++. .+ ++.+.. ...++++++++|. |....+. .++..+.+
T Consensus 67 r---~----------------~~l~~d~~~~~~si~----~~-l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~ 122 (222)
T TIGR03584 67 R---P----------------KELADDFTGTAPVVK----HA-IEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQ 122 (222)
T ss_pred C---h----------------HHHcCCCCCchHHHH----HH-HHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHh
Confidence 1 1 000000122333322 12 233322 2357899999999 8877663 33444555
Q ss_pred cCCcceEEEeeeccCCCcceEEEEeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhcccccccc
Q 012172 239 NKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEII 318 (469)
Q Consensus 239 ~~~~~~~~v~~k~~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~~~~lp~~ 318 (469)
.+++..+.|++...++... .....+|++...-..... ...++....-..|.+.|+++.+.+.+- +
T Consensus 123 ~~~ds~~sv~~~~~~~~~~-~~~~~~g~~~~~~~~~~~----~~rQd~~~~y~~nga~y~~~~~~~~~~--~-------- 187 (222)
T TIGR03584 123 PNAHFVFSVTSFAFPIQRA-FKLKENGGVEMFFPEHFN----TRSQDLEEAYHDAGQFYWGKSQAWLES--G-------- 187 (222)
T ss_pred CCCCEEEEeeccCCChHHh-eEECCCCcEEecCCCccc----CCCCCCchheeeCCeEEEEEHHHHHhc--C--------
Confidence 6688888887754333211 122244555322211111 011222233345999999998877531 0
Q ss_pred cCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHH
Q 012172 319 PNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSD 371 (469)
Q Consensus 319 ~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~ 371 (469)
.+.+ .+...+++++.+-.=|.+..|+..||.-
T Consensus 188 ---------------~~~~------~~~~~~~m~~~~~iDID~~~D~~~ae~l 219 (222)
T TIGR03584 188 ---------------PIFS------PHSIPIVLPRHLVQDIDTLEDWERAELL 219 (222)
T ss_pred ---------------CccC------CCcEEEEeCccceeCCCCHHHHHHHHHH
Confidence 0011 3345566777766777788887777653
No 98
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=97.68 E-value=5.4e-05 Score=70.52 Aligned_cols=61 Identities=18% Similarity=0.415 Sum_probs=47.9
Q ss_pred eEEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHH
Q 012172 81 VVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEK 149 (469)
Q Consensus 81 avviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~ 149 (469)
-+||||+|+|||+. .+.||+|+.| .|+|+++.+++++++.+-. +|. |.|+. -+|+. +||++
T Consensus 2 nAIIlAAG~gsR~~plT~~tpK~LlkV-~g~plIErqI~~L~e~gI~---dI~--IVvGY-lkE~F-eYLkd 65 (231)
T COG4750 2 NAIILAAGLGSRFVPLTQSTPKSLLKV-NGEPLIERQIEQLREAGID---DIT--IVVGY-LKEQF-EYLKD 65 (231)
T ss_pred ceEEEecccccccccccccCChHHHHh-cCcccHHHHHHHHHHCCCc---eEE--EEeee-hHHHH-HHHHH
Confidence 36899999999986 5889999999 9999999999999887633 344 44466 66665 56664
No 99
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=97.66 E-value=0.00048 Score=66.55 Aligned_cols=59 Identities=12% Similarity=0.128 Sum_probs=43.0
Q ss_pred EEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCC-hHHHHHHHH
Q 012172 82 VLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNT-HDDTSKIIE 148 (469)
Q Consensus 82 vviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t-~e~t~~~~~ 148 (469)
+|+||||.++||+ +|.++++ .|+|++++.++.+..... --.+++-|+... ++.+.+++.
T Consensus 2 aiIlA~G~S~R~~---~K~ll~l-~Gkpli~~~i~~l~~~~~----~~~ivVv~~~~~~~~~i~~~~~ 61 (233)
T cd02518 2 AIIQARMGSTRLP---GKVLKPL-GGKPLLEHLLDRLKRSKL----IDEIVIATSTNEEDDPLEALAK 61 (233)
T ss_pred EEEeeCCCCCCCC---CCccccc-CCccHHHHHHHHHHhCCC----CCeEEEECCCCcccHHHHHHHH
Confidence 5899999999996 5999999 999999999999987531 013455445422 155666654
No 100
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=97.61 E-value=8.2e-05 Score=72.09 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=49.6
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcc-cEEEecCCCChHHHHHHH
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNV-PLLLMNSFNTHDDTSKII 147 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~i-plviMtS~~t~e~t~~~~ 147 (469)
.++.+|+||||.|||||.+.||-.+++ .|+|+|+|.++.++.... + .++|.++...++.+.++.
T Consensus 3 ~~~~~vilAaG~G~R~~~~~pKq~l~l-~g~pll~~tl~~f~~~~~-----i~~Ivvv~~~~~~~~~~~~~ 67 (230)
T COG1211 3 MMVSAVILAAGFGSRMGNPVPKQYLEL-GGRPLLEHTLEAFLESPA-----IDEIVVVVSPEDDPYFEKLP 67 (230)
T ss_pred ceEEEEEEcCccccccCCCCCceEEEE-CCEEehHHHHHHHHhCcC-----CCeEEEEEChhhhHHHHHhh
Confidence 367899999999999999999999999 999999999999988752 3 344544443444444444
No 101
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=97.61 E-value=5.4e-05 Score=71.03 Aligned_cols=39 Identities=23% Similarity=0.404 Sum_probs=35.8
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHH
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIE 119 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~ 119 (469)
++.+||||||.|||||. .||.++++ .|+||+++.++.+.
T Consensus 3 ~~~~vILA~G~s~Rm~~-~~K~ll~~-~g~~ll~~~i~~l~ 41 (193)
T PRK00317 3 PITGVILAGGRSRRMGG-VDKGLQEL-NGKPLIQHVIERLA 41 (193)
T ss_pred CceEEEEcCCCcccCCC-CCCceeEE-CCEEHHHHHHHHHh
Confidence 67899999999999963 69999999 99999999999987
No 102
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=97.54 E-value=0.00043 Score=65.38 Aligned_cols=61 Identities=11% Similarity=0.257 Sum_probs=47.1
Q ss_pred cceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHH
Q 012172 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKI 146 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~ 146 (469)
.+++.|+||+|.||||| .+|-|.|+ .|+|++.+.++++.+-.-. .+++.|++...+...+.
T Consensus 4 ~~v~~VvLAAGrssRmG--~~KlLap~-~g~plv~~~~~~a~~a~~~-----~vivV~g~~~~~~~~a~ 64 (199)
T COG2068 4 STVAAVVLAAGRSSRMG--QPKLLAPL-DGKPLVRASAETALSAGLD-----RVIVVTGHRVAEAVEAL 64 (199)
T ss_pred cceEEEEEcccccccCC--Ccceeccc-CCCcHHHHHHHHHHhcCCC-----eEEEEeCcchhhHHHhh
Confidence 36899999999999999 89999999 9999999999999874322 44555677533333333
No 103
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=97.30 E-value=0.00021 Score=73.61 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=36.5
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHh
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l 121 (469)
.+..|+||||+|+||| .+|.++++ .|+||++++++.+...
T Consensus 160 ~i~~IILAGGkSsRMG--~dKaLL~~-~GkpLl~~~ie~l~~~ 199 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG--KDKALLNY-QGQPHAQYLYDLLAKY 199 (346)
T ss_pred CceEEEEeccccccCC--CCccccee-CCccHHHHHHHHHHhh
Confidence 6789999999999998 59999999 8999999999888765
No 104
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=96.53 E-value=0.39 Score=52.43 Aligned_cols=65 Identities=15% Similarity=0.281 Sum_probs=51.8
Q ss_pred cceeEEEEcCCCCCcCC---CCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHH
Q 012172 78 DKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEK 149 (469)
Q Consensus 78 ~k~avviLAGG~GTRmg---~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~ 149 (469)
..+-+|+||----||.. ..+|+.|+|+ .+-||+++.++.+.+.+-. -+++.+|. ...++.+|+++
T Consensus 23 ~rLqAIllaDsf~trF~Plt~~~p~~LLPl-aNVpmIdYtL~~L~~agV~-----eVfvfc~~-~~~qi~e~i~~ 90 (673)
T KOG1461|consen 23 HRLQAILLADSFETRFRPLTLEKPRVLLPL-ANVPMIDYTLEWLERAGVE-----EVFVFCSA-HAAQIIEYIEK 90 (673)
T ss_pred cceEEEEEeccchhcccccccCCCceEeee-cCchHHHHHHHHHHhcCce-----EEEEEecc-cHHHHHHHHhh
Confidence 36788999999999976 4889999999 9999999999998876522 23444454 57889999987
No 105
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=96.16 E-value=0.0057 Score=63.65 Aligned_cols=54 Identities=20% Similarity=0.419 Sum_probs=43.1
Q ss_pred ccccCceEEEeeEEECCCcEEeeeEEEEe--cCCCceeeCCCCeeecceecCCCCC
Q 012172 416 IIELDSLKVTGDVWFGANITLKGKVTIAA--KSGEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 416 ~~~~~~l~v~G~v~fg~~V~i~g~~~I~~--~~~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
|..-.++.|+++|.||++|.|..+|+|++ ..|+.+.|.++|+|+++.|+.|..|
T Consensus 257 l~dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I 312 (460)
T COG1207 257 LIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVI 312 (460)
T ss_pred EeCCCeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEE
Confidence 33446777888888888888888888883 3788899999999999999987643
No 106
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=95.95 E-value=0.012 Score=55.30 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=26.4
Q ss_pred CceEEEeeEEECCCcEEeeeEEEEe-cCCCceeeCCCCeeecceecCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIAA-KSGEKLEIPDGAVLENKEINGP 466 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~~-~~~~~~~I~~~s~le~~~v~~~ 466 (469)
.++.|.+++++|+|+.|..+|.|.+ ..++.+.|.+++.|++++|+.+
T Consensus 26 ~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~ 73 (193)
T cd03353 26 PGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNG 73 (193)
T ss_pred CCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCC
Confidence 3455566666666666666666663 3444455555555555555443
No 107
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=95.82 E-value=0.67 Score=44.84 Aligned_cols=234 Identities=13% Similarity=0.073 Sum_probs=127.1
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
+..+||-|==..|||- =|+|-.+ .|+||++++.+++.+-+.. .+++-| .++.+.+..+++.+ .+.
T Consensus 3 ~~~viIPAR~~STRLp---gKPLadI-~GkpmI~rV~e~a~~s~~~-----rvvVAT---Dde~I~~av~~~G~---~av 67 (247)
T COG1212 3 KFVVIIPARLASTRLP---GKPLADI-GGKPMIVRVAERALKSGAD-----RVVVAT---DDERIAEAVQAFGG---EAV 67 (247)
T ss_pred ceEEEEecchhcccCC---CCchhhh-CCchHHHHHHHHHHHcCCC-----eEEEEc---CCHHHHHHHHHhCC---EEE
Confidence 5667777755555553 4778888 9999999999999876422 445544 57888888877522 111
Q ss_pred EEEecCcceecCCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-cccccc-HHHHHHH
Q 012172 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVD-LKILNHL 236 (469)
Q Consensus 159 ~f~Q~~~P~l~~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~d-p~~Lg~~ 236 (469)
+.+ ...|.|+==++.++..-+. ...+++.=.|+|- ++.... ..++..+
T Consensus 68 -----------------mT~-------~~h~SGTdR~~Ev~~~l~~------~~~~iIVNvQGDeP~i~p~~I~~~~~~L 117 (247)
T COG1212 68 -----------------MTS-------KDHQSGTDRLAEVVEKLGL------PDDEIIVNVQGDEPFIEPEVIRAVAENL 117 (247)
T ss_pred -----------------ecC-------CCCCCccHHHHHHHHhcCC------CcceEEEEccCCCCCCCHHHHHHHHHHH
Confidence 111 1124555444333322111 1224666678888 766533 2344455
Q ss_pred HHcCCcceEEEeeeccCC-----CcceEEEEeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHHHHHHHHHhc
Q 012172 237 IQNKNEYCMEVTPKTLAD-----VKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEAD 311 (469)
Q Consensus 237 ~~~~~~~~~~v~~k~~~~-----~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~~L~~~l~~~ 311 (469)
...+++++.-+++.++.. ..+-+++..+|+.---=-+-+|-.-.+ .+ ...-+-.+|+|.++..+|++.+.-.
T Consensus 118 ~~~~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~--~~-~~p~l~HIGIYayr~~~L~~f~~~~ 194 (247)
T COG1212 118 ENSNADMATLAVKITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN--FG-GTPFLRHIGIYAYRAGFLERFVALK 194 (247)
T ss_pred HhCCcceeeeeeecCCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc--cC-CcchhheeehHHhHHHHHHHHHhcC
Confidence 555677766666555433 333344333333211111123322100 00 0122349999999999999987531
Q ss_pred ccccccccCCCcCCCcceehhHHHhhhHhhhcccceeEeecCccccccCCchhHHHHHHHHH
Q 012172 312 ALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLY 373 (469)
Q Consensus 312 ~~~lp~~~n~K~~~g~~~iqle~~~~d~~~~~~~~~~v~v~r~eF~pVKn~~dL~~~~~~~~ 373 (469)
. .+=|..=+||+.- ++....++.+..+...-=.+|-+.+||..+++.+.
T Consensus 195 p-----------s~LE~~E~LEQLR--~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~ 243 (247)
T COG1212 195 P-----------SPLEKIESLEQLR--VLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILS 243 (247)
T ss_pred C-----------chhHHHHHHHHHH--HHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHH
Confidence 0 0012233444432 24443444443333334489999999999998775
No 108
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=95.12 E-value=0.033 Score=50.88 Aligned_cols=45 Identities=9% Similarity=0.149 Sum_probs=20.4
Q ss_pred eEEEeeEEECCCcEEeeeEEEEec-CCCceeeCCCCeeecceecCC
Q 012172 422 LKVTGDVWFGANITLKGKVTIAAK-SGEKLEIPDGAVLENKEINGP 466 (469)
Q Consensus 422 l~v~G~v~fg~~V~i~g~~~I~~~-~~~~~~I~~~s~le~~~v~~~ 466 (469)
+.|.+++.+|+++.|+.++.|.++ .++.+.|.+++++++++|+.+
T Consensus 48 ~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~ 93 (163)
T cd05636 48 AYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGEN 93 (163)
T ss_pred CEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCC
Confidence 334444444444444444444422 333444555555555555444
No 109
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=94.75 E-value=0.035 Score=44.42 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=26.5
Q ss_pred ceEEEeeEEECCCcEEeeeEEEEec-CCCceeeCCCCeeecceecCC
Q 012172 421 SLKVTGDVWFGANITLKGKVTIAAK-SGEKLEIPDGAVLENKEINGP 466 (469)
Q Consensus 421 ~l~v~G~v~fg~~V~i~g~~~I~~~-~~~~~~I~~~s~le~~~v~~~ 466 (469)
+.+|.+++++|++++|+.+|.|.++ .++.+.|.+++.|.+++++.+
T Consensus 11 ~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~ 57 (80)
T cd05824 11 TAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWN 57 (80)
T ss_pred CCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCC
Confidence 3445555556666666555555533 245566777777766666544
No 110
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=94.19 E-value=0.1 Score=47.44 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=32.9
Q ss_pred CceEEEee---EEECCCcEEeeeEEEEec------CCCceeeCCCCeeecceecCCCC
Q 012172 420 DSLKVTGD---VWFGANITLKGKVTIAAK------SGEKLEIPDGAVLENKEINGPGD 468 (469)
Q Consensus 420 ~~l~v~G~---v~fg~~V~i~g~~~I~~~------~~~~~~I~~~s~le~~~v~~~~~ 468 (469)
.+.+|.|+ +++|+++.|+.+|.|.+. .++.+.|.+++.+++++|+.+.+
T Consensus 29 ~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ 86 (154)
T cd04650 29 HYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVI 86 (154)
T ss_pred CCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCE
Confidence 56667665 778888888888877753 45556666666667666665543
No 111
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=93.89 E-value=0.069 Score=42.28 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=6.4
Q ss_pred eeeCCCCeeecceec
Q 012172 450 LEIPDGAVLENKEIN 464 (469)
Q Consensus 450 ~~I~~~s~le~~~v~ 464 (469)
+.|.++++|++++|+
T Consensus 40 ~~i~~~~~i~~svv~ 54 (79)
T cd03356 40 VTIGANSVIVDSIIG 54 (79)
T ss_pred CEECCCCEEECCEEC
Confidence 334444444444443
No 112
>PLN02472 uncharacterized protein
Probab=93.84 E-value=0.088 Score=51.85 Aligned_cols=16 Identities=6% Similarity=0.086 Sum_probs=7.2
Q ss_pred EEECCCcEEeeeEEEE
Q 012172 428 VWFGANITLKGKVTIA 443 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~ 443 (469)
+++|++|+|+.+|+|.
T Consensus 127 tvIG~~v~IG~~s~L~ 142 (246)
T PLN02472 127 TLIDRYVTIGAYSLLR 142 (246)
T ss_pred cEECCCCEECCCcEEC
Confidence 4444444444444444
No 113
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=93.40 E-value=0.12 Score=47.13 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=37.6
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeeecceecCCCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLENKEINGPGD 468 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~~~v~~~~~ 468 (469)
.+.+++|++++|++++|+.++.|. +..++.+.|.++++|++++|+.+.+
T Consensus 28 ~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~ 78 (163)
T cd05636 28 SGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTK 78 (163)
T ss_pred CCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCE
Confidence 456778888888888888888776 3467778888888888888876654
No 114
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=93.31 E-value=0.14 Score=48.48 Aligned_cols=48 Identities=10% Similarity=0.166 Sum_probs=27.3
Q ss_pred CceEEEe---eEEECCCcEEeeeEEEEec------CCCceeeCCCCeeecceecCCC
Q 012172 420 DSLKVTG---DVWFGANITLKGKVTIAAK------SGEKLEIPDGAVLENKEINGPG 467 (469)
Q Consensus 420 ~~l~v~G---~v~fg~~V~i~g~~~I~~~------~~~~~~I~~~s~le~~~v~~~~ 467 (469)
..++|.| .+++|+++.|+.+|+|.+. .++.+.|.++++|++++|+.+.
T Consensus 37 ~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~ 93 (192)
T TIGR02287 37 PLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNA 93 (192)
T ss_pred CCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCC
Confidence 3455554 3666777777777777432 3334455555666666665543
No 115
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=93.20 E-value=0.16 Score=46.48 Aligned_cols=15 Identities=20% Similarity=0.140 Sum_probs=7.1
Q ss_pred EECCCcEEeeeEEEE
Q 012172 429 WFGANITLKGKVTIA 443 (469)
Q Consensus 429 ~fg~~V~i~g~~~I~ 443 (469)
+||+++.|+.+|+|.
T Consensus 44 ~IG~~~~I~~~~~I~ 58 (161)
T cd03359 44 SIGRYCILSEGCVIR 58 (161)
T ss_pred EECCCcEECCCCEEe
Confidence 444444444444444
No 116
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=93.13 E-value=0.17 Score=45.60 Aligned_cols=47 Identities=19% Similarity=0.337 Sum_probs=25.8
Q ss_pred CceEEEee---EEECCCcEEeeeEEEEe------cCCCceeeCCCCeeecceecCC
Q 012172 420 DSLKVTGD---VWFGANITLKGKVTIAA------KSGEKLEIPDGAVLENKEINGP 466 (469)
Q Consensus 420 ~~l~v~G~---v~fg~~V~i~g~~~I~~------~~~~~~~I~~~s~le~~~v~~~ 466 (469)
+..+|.|+ ++||+++.|+.+|+|.+ ..++.+.|.+++.+++++|+.+
T Consensus 28 ~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~ 83 (153)
T cd04645 28 FGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDN 83 (153)
T ss_pred CCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCC
Confidence 34445543 46666666666666664 2344455555555555555544
No 117
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=92.99 E-value=0.12 Score=49.18 Aligned_cols=49 Identities=22% Similarity=0.239 Sum_probs=26.6
Q ss_pred CceEEEee---EEECCCcEEeeeEEEEec------CCCceeeCCCCeeecceecCCCC
Q 012172 420 DSLKVTGD---VWFGANITLKGKVTIAAK------SGEKLEIPDGAVLENKEINGPGD 468 (469)
Q Consensus 420 ~~l~v~G~---v~fg~~V~i~g~~~I~~~------~~~~~~I~~~s~le~~~v~~~~~ 468 (469)
.+++|.|+ +.+|+++.|+.+|+|... .++.+.|.++++|++++|+.+..
T Consensus 39 ~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~v~ 96 (196)
T PRK13627 39 PLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDAL 96 (196)
T ss_pred CCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCCCE
Confidence 34445443 355555555555555422 34455566666666766665543
No 118
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=92.91 E-value=0.14 Score=48.43 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=29.8
Q ss_pred CceEEEeeEEECCCcEEeeeEEEEec-----CCCceeeCCCCee
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIAAK-----SGEKLEIPDGAVL 458 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~~~-----~~~~~~I~~~s~l 458 (469)
.+.+|.|+|++|+++.|..+|+|++. .|+.+.|.++++|
T Consensus 19 ~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I 62 (192)
T TIGR02287 19 PTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVM 62 (192)
T ss_pred CCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEE
Confidence 56778899999999999999999854 3445566666666
No 119
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=92.67 E-value=0.14 Score=41.01 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=33.6
Q ss_pred ceEEEeeEEECCCcEEeeeEEEEec-CCCceeeCCCCeeecceecCCCCC
Q 012172 421 SLKVTGDVWFGANITLKGKVTIAAK-SGEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 421 ~l~v~G~v~fg~~V~i~g~~~I~~~-~~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
...|+ +..+++++.|+.++.|.++ .++.+.|.+++++.+++|+.+.+|
T Consensus 28 ~~~i~-~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~~ii~~~~~i 76 (81)
T cd04652 28 RVKIT-NCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKDCLVGSGYRV 76 (81)
T ss_pred CCEEe-CcEEeCCCEECCCCEEeccEEeCCCEECCCCEEccCEECCCcEe
Confidence 34444 3556677777777777633 456688999999999999877653
No 120
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=92.65 E-value=0.16 Score=46.12 Aligned_cols=48 Identities=17% Similarity=0.208 Sum_probs=31.5
Q ss_pred CceEEEe---eEEECCCcEEeeeEEEEe------cCCCceeeCCCCeeecceecCCC
Q 012172 420 DSLKVTG---DVWFGANITLKGKVTIAA------KSGEKLEIPDGAVLENKEINGPG 467 (469)
Q Consensus 420 ~~l~v~G---~v~fg~~V~i~g~~~I~~------~~~~~~~I~~~s~le~~~v~~~~ 467 (469)
..++|.+ .+.+|+++.|+.+|+|.. ..++.+.|.++++|++++|+.+.
T Consensus 29 ~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~ 85 (155)
T cd04745 29 PHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNA 85 (155)
T ss_pred CCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCC
Confidence 4556655 477888888888888743 34455666666666777776554
No 121
>PLN02296 carbonate dehydratase
Probab=92.36 E-value=0.19 Score=50.22 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=8.4
Q ss_pred CCceeeCCCCeeecceecC
Q 012172 447 GEKLEIPDGAVLENKEING 465 (469)
Q Consensus 447 ~~~~~I~~~s~le~~~v~~ 465 (469)
|+.+.|.++|+|.+++|+.
T Consensus 123 G~~v~IG~~avI~g~~Igd 141 (269)
T PLN02296 123 GDNVTIGHSAVLHGCTVED 141 (269)
T ss_pred CCCCEECCCceecCCEECC
Confidence 3334444444444444443
No 122
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=92.31 E-value=0.16 Score=52.11 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=14.9
Q ss_pred EEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCee
Q 012172 424 VTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVL 458 (469)
Q Consensus 424 v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~l 458 (469)
|.+++++|+++.|..+|+|. +..|+.+.|.++++|
T Consensus 136 Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vI 172 (324)
T TIGR01853 136 IGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVI 172 (324)
T ss_pred ECCcceeCCCceECCCcEECCCCEECCCCEECCCcEE
Confidence 33344444444444444443 233444444444444
No 123
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=92.30 E-value=0.12 Score=50.78 Aligned_cols=41 Identities=15% Similarity=0.197 Sum_probs=30.0
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE--------------ecCCCceeeCCCCeeec
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA--------------AKSGEKLEIPDGAVLEN 460 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~--------------~~~~~~~~I~~~s~le~ 460 (469)
.+++|.+++++|++++|..+++|. ...|+.+.|.++++|..
T Consensus 40 ~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~ 94 (254)
T cd03351 40 SHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHR 94 (254)
T ss_pred CCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEec
Confidence 567788888888888888888884 24556666666666653
No 124
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=92.22 E-value=0.13 Score=55.37 Aligned_cols=54 Identities=11% Similarity=0.253 Sum_probs=44.3
Q ss_pred ccccCceEEEeeEEECCCcEEeeeEEEEe--cCCCceeeCCCCeeecceecCCCCC
Q 012172 416 IIELDSLKVTGDVWFGANITLKGKVTIAA--KSGEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 416 ~~~~~~l~v~G~v~fg~~V~i~g~~~I~~--~~~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
+.....+.+.+++++|+|+.|.++|+|.+ ..|..+.|.++|+|++++|+.+..|
T Consensus 259 ~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I 314 (481)
T PRK14358 259 LQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVI 314 (481)
T ss_pred EecCCeeeccCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEE
Confidence 33345666789999999999999999984 3688899999999999999887653
No 125
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=92.18 E-value=0.17 Score=39.74 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=18.6
Q ss_pred EECCCcEEeeeEEEE-ecCCCceeeCCCCeee-cceecCCC
Q 012172 429 WFGANITLKGKVTIA-AKSGEKLEIPDGAVLE-NKEINGPG 467 (469)
Q Consensus 429 ~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le-~~~v~~~~ 467 (469)
.+++++.|+.++.|. +..++.+.|++++++. +++|+.+.
T Consensus 35 ~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~ 75 (79)
T cd05787 35 YIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGV 75 (79)
T ss_pred EEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCc
Confidence 344444444444444 2234445566666554 35555443
No 126
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=91.96 E-value=0.28 Score=44.19 Aligned_cols=41 Identities=29% Similarity=0.405 Sum_probs=30.2
Q ss_pred CceEEEeeEEECCCcEEeeeEEEEec-----CCCceeeCCCCeeec
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIAAK-----SGEKLEIPDGAVLEN 460 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~~~-----~~~~~~I~~~s~le~ 460 (469)
.+.+|.|++++|+++.|.++++|.+. .|+.+.|.++++|.+
T Consensus 10 ~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~ 55 (153)
T cd04645 10 PNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHV 55 (153)
T ss_pred CCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEec
Confidence 56788899999999999999988854 455555555555555
No 127
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=91.89 E-value=0.26 Score=44.61 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=21.7
Q ss_pred eEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeec-ceecCC
Q 012172 427 DVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLEN-KEINGP 466 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~-~~v~~~ 466 (469)
++.+|+++.|+.+++|. +..|+.+.|.++++|.+ ++|+.+
T Consensus 61 ~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~g~~Ig~~ 102 (155)
T cd04745 61 DTVLEENGHIGHGAILHGCTIGRNALVGMNAVVMDGAVIGEE 102 (155)
T ss_pred CeEEcCCCEECCCcEEECCEECCCCEECCCCEEeCCCEECCC
Confidence 35555666665555555 33455566666666644 455444
No 128
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=91.80 E-value=11 Score=35.30 Aligned_cols=172 Identities=13% Similarity=0.193 Sum_probs=86.5
Q ss_pred cCCCCC-C-ccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEEEEecCcceec
Q 012172 92 TMGCTG-P-KSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLC 169 (469)
Q Consensus 92 Rmg~~~-P-K~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~f~Q~~~P~l~ 169 (469)
||||++ | |.+.++ +|+||++|.++++++.+.- =.+++-| +++++.+.++++. ..+.++. +.
T Consensus 7 R~gS~rlp~Knl~~l-~gkpLi~~~i~~a~~s~~~----d~IvVaT---d~~~i~~~~~~~g---~~v~~~~-~~----- 69 (217)
T PF02348_consen 7 RGGSKRLPGKNLKPL-GGKPLIEYVIERAKQSKLI----DEIVVAT---DDEEIDDIAEEYG---AKVIFRR-GS----- 69 (217)
T ss_dssp -SSSSSSTTGGGSEE-TTEEHHHHHHHHHHHTTTT----SEEEEEE---SSHHHHHHHHHTT---SEEEE---TT-----
T ss_pred CCCCCCCCcchhhHh-CCccHHHHHHHHHHhCCCC----CeEEEeC---CCHHHHHHHHHcC---CeeEEcC-hh-----
Confidence 777766 3 778899 9999999999999876521 1356644 4677777887753 2333211 11
Q ss_pred CCCCcccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCc---EEEEEeCcc-ccccccH-HHHHHHHHcCCcce
Q 012172 170 ADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKE---YVFAANSDN-LGAIVDL-KILNHLIQNKNEYC 244 (469)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~---~v~v~n~DN-L~~~~dp-~~Lg~~~~~~~~~~ 244 (469)
+.+..... .+.+.....+ ++...++|+ |..+.++ ..+..+.+...++.
T Consensus 70 ----------------------~~~~~~r~-----~~~~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~~~ 122 (217)
T PF02348_consen 70 ----------------------LADDTDRF-----IEAIKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANEDYI 122 (217)
T ss_dssp ----------------------SSSHHHHH-----HHHHHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTSSE
T ss_pred ----------------------hcCCcccH-----HHHHHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCchhhh
Confidence 22221111 2233333334 899999999 8877665 34555555555532
Q ss_pred EE-Eeeec-----cCCCcceEEEEeCCeeEEEEeccCChhhhhhccccccccEEEEEeEEEeHH-HHHHHH
Q 012172 245 ME-VTPKT-----LADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLK-AIKRLV 308 (469)
Q Consensus 245 ~~-v~~k~-----~~~~~~G~iv~~~g~~~ivEy~~~~~e~~~~~~~~~~~~~~Nt~~~~~~l~-~L~~~l 308 (469)
.. +.... ......=.+.+.++....-+....+.--... .....+...+.+.+.+... .+.++-
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (217)
T PF02348_consen 123 SNLVDPVGSSVEIFNFNPLKVLFDDDGLELYFSEHVIPYIRRNP-EEFKYFYIRQVGIYAFRKEMFLERFT 192 (217)
T ss_dssp EEEEEEECSHHHHTSTTSTEEEECTTSBEEEEESSESSECHHHH-CSSSSTEEEEEEEEEEEHHHHHHHHH
T ss_pred ccccccccchhhcccccceEEEeccccchhhcccCCCccccccc-cccccccccccccccccccccccccc
Confidence 22 21111 1111122233333333322222232111000 0001244678999999987 555554
No 129
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=91.61 E-value=0.14 Score=34.29 Aligned_cols=10 Identities=30% Similarity=0.348 Sum_probs=4.2
Q ss_pred eeeCCCCeee
Q 012172 450 LEIPDGAVLE 459 (469)
Q Consensus 450 ~~I~~~s~le 459 (469)
+.|.++++|.
T Consensus 26 ~~I~~~~~I~ 35 (36)
T PF00132_consen 26 CVIGPGVVIG 35 (36)
T ss_dssp EEEETTEEEE
T ss_pred CEEcCCCEEC
Confidence 3344444443
No 130
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=91.53 E-value=0.23 Score=50.61 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=10.5
Q ss_pred ceEEEeeEEECCCcEEeeeEEEE
Q 012172 421 SLKVTGDVWFGANITLKGKVTIA 443 (469)
Q Consensus 421 ~l~v~G~v~fg~~V~i~g~~~I~ 443 (469)
+++|+.++.+|+||.|.++|+|-
T Consensus 123 ~~vI~~~v~IG~~~~I~~~~vIg 145 (338)
T COG1044 123 NVVIGAGVVIGENVVIGAGAVIG 145 (338)
T ss_pred CeEECCCCEECCCcEECCCCEEC
Confidence 44444444444444444444443
No 131
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=91.45 E-value=0.28 Score=38.02 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=15.7
Q ss_pred ceEEEeeEEECCCcEEeeeEEEEe
Q 012172 421 SLKVTGDVWFGANITLKGKVTIAA 444 (469)
Q Consensus 421 ~l~v~G~v~fg~~V~i~g~~~I~~ 444 (469)
+.+|.+.+.+|++++|.++|.|.+
T Consensus 12 ~~~i~~~~~Ig~~~~I~~~~~i~~ 35 (78)
T cd00208 12 KAVIRGPVVIGDNVNIGPGAVIGA 35 (78)
T ss_pred CCEEeCcEEECCCCEECCCCEEEe
Confidence 455566677777777777766664
No 132
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=91.40 E-value=0.23 Score=39.73 Aligned_cols=46 Identities=26% Similarity=0.299 Sum_probs=29.1
Q ss_pred eEEEeeEEECCCcEEeeeEEEEec-CCCceeeCCCCeeecceecCCCC
Q 012172 422 LKVTGDVWFGANITLKGKVTIAAK-SGEKLEIPDGAVLENKEINGPGD 468 (469)
Q Consensus 422 l~v~G~v~fg~~V~i~g~~~I~~~-~~~~~~I~~~s~le~~~v~~~~~ 468 (469)
..|. ++.+|+++.|+.++.|..+ .+..+.|.+++.|++++|+.+..
T Consensus 12 ~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~ 58 (81)
T cd04652 12 TSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAV 58 (81)
T ss_pred CEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCE
Confidence 3443 4666666666666666633 45556777778887777766543
No 133
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=91.40 E-value=0.35 Score=43.92 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=29.4
Q ss_pred CceEEEeeEEECCCcEEeeeEEEEec-----CCCceeeCCCCeeec
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIAAK-----SGEKLEIPDGAVLEN 460 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~~~-----~~~~~~I~~~s~le~ 460 (469)
.+.+|.|++++|+++.|..+++|.+. .|+.+.|.++++|..
T Consensus 11 ~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~ 56 (154)
T cd04650 11 PTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHT 56 (154)
T ss_pred CCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEe
Confidence 55667788888888888888888853 455566666666654
No 134
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=91.40 E-value=0.21 Score=52.62 Aligned_cols=63 Identities=16% Similarity=0.127 Sum_probs=32.9
Q ss_pred CCeEEECCCcccccccccccccCCcccccCceEEEe----eEEECCCcEEeeeEEEEe-cCCCceeeCCCCeeecceecC
Q 012172 391 NPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTG----DVWFGANITLKGKVTIAA-KSGEKLEIPDGAVLENKEING 465 (469)
Q Consensus 391 ~p~V~l~~~~~~~~~~~~~i~~~p~~~~~~~l~v~G----~v~fg~~V~i~g~~~I~~-~~~~~~~I~~~s~le~~~v~~ 465 (469)
.+.+.++|... +. ++.+ .+.+.|++ ++.+|++++|.++++|.+ ..|+.+.|+. ++++++.|+.
T Consensus 269 g~~~~I~~~~~--------i~--~~~i-~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~-~~~~~~~i~~ 336 (430)
T PRK14359 269 EEGVRILGKSK--------IE--NSHI-KAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKN-AKLNGVKAGH 336 (430)
T ss_pred CCCCEECCCeE--------EE--eeEE-CCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcc-cEeccccccc
Confidence 67777777754 21 1111 13344444 455677777777776663 2344444544 3345555544
No 135
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=91.37 E-value=0.4 Score=44.04 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=9.6
Q ss_pred eEEECCCcEEeeeEEEE
Q 012172 427 DVWFGANITLKGKVTIA 443 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I~ 443 (469)
.+.+|+++.|..+|+|.
T Consensus 38 ~i~IG~~~~I~~~~~I~ 54 (164)
T cd04646 38 PIIIGENNIIEEQVTIV 54 (164)
T ss_pred CeEECCCCEECCCcEEe
Confidence 45555555555555554
No 136
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=91.07 E-value=0.23 Score=49.31 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=28.1
Q ss_pred CceEEEeeEEECCCcEEeeeEEEEe--------------cCCCceeeCCCCeeec
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIAA--------------KSGEKLEIPDGAVLEN 460 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~~--------------~~~~~~~I~~~s~le~ 460 (469)
++++|.|++++|++++|..+++|.+ ..|+.+.|.++++|..
T Consensus 43 ~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~ 97 (262)
T PRK05289 43 SHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINR 97 (262)
T ss_pred CCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEec
Confidence 6777888888888888888888842 3445555555555543
No 137
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=91.06 E-value=0.4 Score=44.08 Aligned_cols=47 Identities=26% Similarity=0.317 Sum_probs=35.5
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecceecCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENKEINGP 466 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~~v~~~ 466 (469)
..+.+.|++++|+++.|+++|.|. +..|+.+.|.++|++.++.|+.+
T Consensus 75 ~~~~i~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~~~i~~~ 122 (167)
T cd00710 75 HGAIVHGPAYIGDNCFIGFRSVVFNAKVGDNCVIGHNAVVDGVEIPPG 122 (167)
T ss_pred CCCEEeCCEEECCCCEECCCCEEECCEECCCCEEcCCCEEeCCEeCCC
Confidence 567777888888888888888887 44677788888888877666544
No 138
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=90.83 E-value=0.13 Score=54.42 Aligned_cols=77 Identities=16% Similarity=0.105 Sum_probs=56.3
Q ss_pred ccccEEEEEeEEEeHHHHHHHHHhc------cccccccc----CCCcCCCcceehhHH-Hh-hhHhhhc--ccceeEeec
Q 012172 287 EKFKIFNTNNLWVNLKAIKRLVEAD------ALKMEIIP----NPKEVDGIKVLQLET-AA-GAAIRFF--DHAIGCNVH 352 (469)
Q Consensus 287 ~~~~~~Nt~~~~~~l~~L~~~l~~~------~~~lp~~~----n~K~~~g~~~iqle~-~~-~d~~~~~--~~~~~v~v~ 352 (469)
+-+..=|+++|++++++|.+..... .-.+|+.. -.+.+ +++++++|. |+ +|.|.+- .+..+..||
T Consensus 317 ~~~n~Nni~l~~~~~~~l~~~~~l~Lpi~~a~Kki~~~~~~~~~~t~i-~~~i~kfe~~FI~fDlF~~~s~~~~~~~~vp 395 (472)
T COG4284 317 KYFNTNNIWLHLFSVKFLKEAAYLNLPIHKAIKKIPQLDNIIQLTTAI-GKNISKFENEFIPFDLFLYKSDENGGLLLVP 395 (472)
T ss_pred eeeccccceeehhHHHHHHhhhccCCcchhhhcccCccccceeecccc-ccchhhccccccceeeeEEEecCCCceEecc
Confidence 3445568899999999988766531 12344331 22222 788999997 99 9999887 788999999
Q ss_pred Cc-cccccCCchh
Q 012172 353 RS-RFLPVKATSD 364 (469)
Q Consensus 353 r~-eF~pVKn~~d 364 (469)
|. ||+|+||-.+
T Consensus 396 R~~~f~Plkn~~~ 408 (472)
T COG4284 396 RFGEFSPLKNLEG 408 (472)
T ss_pred ccCCCCchhhccC
Confidence 97 7999999765
No 139
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=90.80 E-value=0.35 Score=40.84 Aligned_cols=47 Identities=9% Similarity=0.114 Sum_probs=32.2
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecceecCCCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENKEINGPGD 468 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~~v~~~~~ 468 (469)
...+|++++++|++++|++ .|. +...+.+.|.++++|++++|+.+.+
T Consensus 40 ~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v~ 87 (101)
T cd05635 40 MGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWCN 87 (101)
T ss_pred CCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCCE
Confidence 4567778888888888864 233 2233456688888888888887654
No 140
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=90.64 E-value=0.28 Score=48.33 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=29.8
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE--------------ecCCCceeeCCCCeee
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA--------------AKSGEKLEIPDGAVLE 459 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~--------------~~~~~~~~I~~~s~le 459 (469)
.+++|.|++++|++++|..+++|. ...|+.+.|.++++|.
T Consensus 39 ~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~ 92 (254)
T TIGR01852 39 SHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTIN 92 (254)
T ss_pred CCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEEC
Confidence 567888899999999998888885 2355556666666665
No 141
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=90.62 E-value=0.31 Score=52.50 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=42.2
Q ss_pred ccccCceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeeecceecCCCC
Q 012172 416 IIELDSLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLENKEINGPGD 468 (469)
Q Consensus 416 ~~~~~~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~~~v~~~~~ 468 (469)
+...+...|.++|++|++++|..+++|. ...|+.+.|.++++|++++|+.+..
T Consensus 260 ~~~~~~~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~ 314 (482)
T PRK14352 260 IVDPATTWIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGAS 314 (482)
T ss_pred EECCCeEEEeCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCE
Confidence 3333567888999999999999988888 4578888899999988888877654
No 142
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=90.58 E-value=0.56 Score=39.11 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=6.5
Q ss_pred eEEECCCcEEeeeEEE
Q 012172 427 DVWFGANITLKGKVTI 442 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I 442 (469)
++.+|+++.|+.+++|
T Consensus 58 ~~~Ig~~~~ig~~~~i 73 (109)
T cd04647 58 PIVIGDDVWIGANVVI 73 (109)
T ss_pred CeEECCCCEECCCCEE
Confidence 3444444444433333
No 143
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=90.27 E-value=0.27 Score=52.28 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=17.9
Q ss_pred EEECCCcEEeeeEEEE-ecCCCceeeCCCCeee-cceecCCC
Q 012172 428 VWFGANITLKGKVTIA-AKSGEKLEIPDGAVLE-NKEINGPG 467 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le-~~~v~~~~ 467 (469)
+++|+|++|+.++.|. +..++.+.|.++++|. +++|+.+.
T Consensus 305 ~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~ 346 (456)
T PRK14356 305 AVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGA 346 (456)
T ss_pred eEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCC
Confidence 3444444444444444 2233344455554443 44444443
No 144
>PLN02296 carbonate dehydratase
Probab=90.23 E-value=0.36 Score=48.14 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=10.2
Q ss_pred eEEEeeEEECCCcEEeeeEEEE
Q 012172 422 LKVTGDVWFGANITLKGKVTIA 443 (469)
Q Consensus 422 l~v~G~v~fg~~V~i~g~~~I~ 443 (469)
.+|.|+|.+|+++.|..+|+|.
T Consensus 65 A~V~G~V~IG~~~~I~~gavI~ 86 (269)
T PLN02296 65 ASVIGDVQVGRGSSIWYGCVLR 86 (269)
T ss_pred cEEEcceEECCCCEECCCCEEE
Confidence 3344444444444444444444
No 145
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=90.22 E-value=0.46 Score=40.10 Aligned_cols=42 Identities=10% Similarity=0.021 Sum_probs=28.3
Q ss_pred eEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecceecCCCC
Q 012172 427 DVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENKEINGPGD 468 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~~v~~~~~ 468 (469)
+..+|++++|+.++.|. +-.+..+.|+++++|++++|+.+.+
T Consensus 28 ~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~ 70 (104)
T cd04651 28 NSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVV 70 (104)
T ss_pred eCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCE
Confidence 34556666776666666 3345567788888888888877654
No 146
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=90.04 E-value=1 Score=43.52 Aligned_cols=61 Identities=13% Similarity=0.239 Sum_probs=42.7
Q ss_pred ceeEEEEcCCCCCcCCCCC--CccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCCh-HHHHHHHHH
Q 012172 79 KLVVLKLNGGLGTTMGCTG--PKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTH-DDTSKIIEK 149 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~--PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~-e~t~~~~~~ 149 (469)
++++|+=| ||||+. =|+|.|+ .++||+++++++++..... =-+|+-||.... +.+.++..+
T Consensus 3 ~I~~IiQA-----RmgStRLpgKvLlpL-~~~pmI~~~lervrks~~~----d~ivvATS~~~~d~~l~~~~~~ 66 (241)
T COG1861 3 MILVIIQA-----RMGSTRLPGKVLLPL-GGEPMIEYQLERVRKSKDL----DKIVVATSDKEEDDALEEVCRS 66 (241)
T ss_pred cEEEEeee-----cccCccCCcchhhhc-CCCchHHHHHHHHhccccc----cceEEEecCCcchhHHHHHHHH
Confidence 44555544 888865 4889999 9999999999999876521 357788888333 344556555
No 147
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=90.03 E-value=0.48 Score=46.63 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=12.5
Q ss_pred eEEECCCcEEeeeEEEE
Q 012172 427 DVWFGANITLKGKVTIA 443 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I~ 443 (469)
.+.+|+++.|+.+|+|.
T Consensus 76 ~v~IG~~~~I~~~~~I~ 92 (254)
T TIGR01852 76 ELIIGDNNTIREFVTIN 92 (254)
T ss_pred eEEECCCCEECCCCEEC
Confidence 57777777777777776
No 148
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=90.02 E-value=0.34 Score=51.75 Aligned_cols=50 Identities=22% Similarity=0.326 Sum_probs=39.8
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeeecceecCCCCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
....|.++|.+|+++.|..+|+|. +..|+.+.|.++++|++++|+.+..|
T Consensus 261 ~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I 312 (459)
T PRK14355 261 ETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTV 312 (459)
T ss_pred CceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEE
Confidence 345677888888888888888887 44678889999999999998877653
No 149
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=89.98 E-value=0.29 Score=44.22 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=42.6
Q ss_pred ccccCCcccccCceEEEeeEEECCCcEEeeeEEEEecCCCceeeCCCCeeec
Q 012172 409 RFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLEN 460 (469)
Q Consensus 409 ~i~~~p~~~~~~~l~v~G~v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~le~ 460 (469)
+++-.|+-+-|..-.|.|||+|++++++-+.+++.++. .++.|..+.+||.
T Consensus 8 svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~a-GPI~iGEnniiEE 58 (190)
T KOG4042|consen 8 SVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATA-GPIYIGENNIIEE 58 (190)
T ss_pred eeeecCceEEEEecccccceEecCCcEecceEEEEccc-CCEEEccCchhhh
Confidence 34445666667888899999999999999999999776 4688999999987
No 150
>PLN02472 uncharacterized protein
Probab=89.75 E-value=0.43 Score=46.99 Aligned_cols=49 Identities=12% Similarity=0.128 Sum_probs=34.1
Q ss_pred ceEEEee---EEECCCcEEeeeEEEE------------ecCCCceeeCCCCeeecceecCCCCC
Q 012172 421 SLKVTGD---VWFGANITLKGKVTIA------------AKSGEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 421 ~l~v~G~---v~fg~~V~i~g~~~I~------------~~~~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
+.+|.|+ +++|+++.|+.+|+|. ...++.+.|.++++|++++|+.+..|
T Consensus 89 gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~v~I 152 (246)
T PLN02472 89 GAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPECII 152 (246)
T ss_pred CCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcCCCEE
Confidence 4566665 7777777777777775 23455677888888888888776543
No 151
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=89.73 E-value=0.27 Score=51.05 Aligned_cols=48 Identities=21% Similarity=0.251 Sum_probs=43.1
Q ss_pred eEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeeecceecCCCCC
Q 012172 422 LKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 422 l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
..++|++++|++++|++++.|. +..|+.+.|++++.|++++|..+++|
T Consensus 256 ~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i 305 (358)
T COG1208 256 AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVI 305 (358)
T ss_pred ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEE
Confidence 7899999999999999999998 56888899999999999999888764
No 152
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=89.69 E-value=0.62 Score=45.83 Aligned_cols=41 Identities=20% Similarity=0.131 Sum_probs=22.4
Q ss_pred eEEECCCcEEeeeEEEEe---------cCCCceeeCCCCee-ecceecCCC
Q 012172 427 DVWFGANITLKGKVTIAA---------KSGEKLEIPDGAVL-ENKEINGPG 467 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I~~---------~~~~~~~I~~~s~l-e~~~v~~~~ 467 (469)
.+.+|++++|+.+|+|.. ..|+.+.|.++++| .+++|+.+.
T Consensus 77 ~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~ 127 (254)
T cd03351 77 RLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNV 127 (254)
T ss_pred eEEECCCCEECCccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCc
Confidence 566777777777777652 12333444444444 555555543
No 153
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=89.59 E-value=0.29 Score=51.93 Aligned_cols=39 Identities=13% Similarity=0.176 Sum_probs=18.5
Q ss_pred EEECCCcEEeeeEEEE--ecCCCceeeCCCCeeecceecCC
Q 012172 428 VWFGANITLKGKVTIA--AKSGEKLEIPDGAVLENKEINGP 466 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~~~v~~~ 466 (469)
+.+|++++|+.+++|. +..|+.+.|.+++++.++.|+.+
T Consensus 304 ~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~ 344 (446)
T PRK14353 304 AHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEG 344 (446)
T ss_pred cEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCC
Confidence 3444444444444443 33444455555555555555443
No 154
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=89.50 E-value=0.71 Score=42.99 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=27.4
Q ss_pred CceEEEeeEEECCCcEEeeeEEEEecCCCceeeCCCCee
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVL 458 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~l 458 (469)
.+.+|-|||.+|++|.|..+++|+++. +++.|..+|.|
T Consensus 22 ~~A~viGdV~Ig~~vsIw~~aVlRgD~-~~I~IG~~tNI 59 (176)
T COG0663 22 PSATVIGDVRIGAGVSIWPGAVLRGDV-EPIRIGARTNI 59 (176)
T ss_pred CCCEEEEeEEECCCCEECCceEEEccC-CceEECCCcee
Confidence 567777888888888888777777665 55666666665
No 155
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=89.27 E-value=0.32 Score=41.06 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=15.8
Q ss_pred EECCCcEEeeeEEEEec-CCCceeeCCCCeeecc
Q 012172 429 WFGANITLKGKVTIAAK-SGEKLEIPDGAVLENK 461 (469)
Q Consensus 429 ~fg~~V~i~g~~~I~~~-~~~~~~I~~~s~le~~ 461 (469)
.+++++.|+.++.|.++ .++.+.|++++++++.
T Consensus 47 iI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~~ 80 (104)
T cd04651 47 VIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGGD 80 (104)
T ss_pred EEcCCCEECCCCEEEeEEECCCCEECCCCEECCC
Confidence 34455555555555422 3344555555555443
No 156
>PLN02694 serine O-acetyltransferase
Probab=89.18 E-value=0.52 Score=47.46 Aligned_cols=30 Identities=30% Similarity=0.425 Sum_probs=11.8
Q ss_pred EECCCcEEeeeEEEE--ecCCCceeeCCCCee
Q 012172 429 WFGANITLKGKVTIA--AKSGEKLEIPDGAVL 458 (469)
Q Consensus 429 ~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~l 458 (469)
++|++|.|+.+++|. ...|+.+.|.++|++
T Consensus 214 iIGd~V~IGagA~Ilggi~IGd~a~IGAgSVV 245 (294)
T PLN02694 214 KIGDGVLIGAGATILGNVKIGEGAKIGAGSVV 245 (294)
T ss_pred EECCCeEECCeeEECCCCEECCCCEECCCCEE
Confidence 334444444443332 223344444444444
No 157
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=89.13 E-value=0.41 Score=50.64 Aligned_cols=50 Identities=22% Similarity=0.407 Sum_probs=35.9
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeeecceecCCCCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
..+.+.+.+.+|+++.|..+++|. +..|..+.|.++++|.+++|+.+++|
T Consensus 254 ~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I 305 (451)
T TIGR01173 254 ARFDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVI 305 (451)
T ss_pred CeEEECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEE
Confidence 345567777777777777777776 44677777888888888777776653
No 158
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=88.79 E-value=0.6 Score=46.66 Aligned_cols=22 Identities=9% Similarity=0.237 Sum_probs=10.1
Q ss_pred eEEEeeEEECCCcEEeeeEEEE
Q 012172 422 LKVTGDVWFGANITLKGKVTIA 443 (469)
Q Consensus 422 l~v~G~v~fg~~V~i~g~~~I~ 443 (469)
++|..++.+|++|+|..+|+|-
T Consensus 162 ivIG~~a~IGdnv~I~~~VtiG 183 (273)
T PRK11132 162 IVIGETAVIENDVSILQSVTLG 183 (273)
T ss_pred eEECCCCEECCCCEEcCCcEEe
Confidence 3444444444444444444443
No 159
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=88.71 E-value=0.38 Score=52.51 Aligned_cols=38 Identities=21% Similarity=0.437 Sum_probs=19.8
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCee
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVL 458 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~l 458 (469)
+++.|.+. ++|.||+|+++|.|. |-.++.+.|+++++|
T Consensus 361 sN~~I~~S-~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l 399 (673)
T KOG1461|consen 361 SNVRIKNS-FIWNNVTIGDNCRIDHAIICDDVKIGEGAIL 399 (673)
T ss_pred CceEEeee-eeecCcEECCCceEeeeEeecCcEeCCCccc
Confidence 44444443 456666666666666 333444555555444
No 160
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=88.62 E-value=0.6 Score=42.82 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=8.8
Q ss_pred EEEeeEEECCCcEEeeeEEEE
Q 012172 423 KVTGDVWFGANITLKGKVTIA 443 (469)
Q Consensus 423 ~v~G~v~fg~~V~i~g~~~I~ 443 (469)
+|.+++.+|+||+|..+|.|.
T Consensus 83 ~Ig~~~~IG~~~~I~~~v~ig 103 (162)
T TIGR01172 83 VIGETAVIGDDVTIYHGVTLG 103 (162)
T ss_pred EECCCCEECCCCEEcCCCEEC
Confidence 333334444444444444443
No 161
>PLN02357 serine acetyltransferase
Probab=88.37 E-value=0.62 Score=48.21 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=19.9
Q ss_pred EEECCCcEEeeeEEEE--ecCCCceeeCCCCeeec
Q 012172 428 VWFGANITLKGKVTIA--AKSGEKLEIPDGAVLEN 460 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~ 460 (469)
+.+|++|.|+.++.|. ...|+.+.|.++|++..
T Consensus 279 piIGd~V~IGagA~IlggV~IGdga~IGAgSVV~~ 313 (360)
T PLN02357 279 PKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLK 313 (360)
T ss_pred ceeCCCeEECCceEEECCeEECCCCEECCCCEECc
Confidence 5566666666665554 23566666777776654
No 162
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=88.35 E-value=0.49 Score=40.25 Aligned_cols=24 Identities=8% Similarity=0.177 Sum_probs=16.8
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA 443 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~ 443 (469)
.+..+.+++++|+++.|..+++|.
T Consensus 27 ~~~~i~~~~~Ig~~~~I~~~~~i~ 50 (119)
T cd03358 27 SNVSIYEGVTIEDDVFIGPNVVFT 50 (119)
T ss_pred CCcEEeCCeEECCCcEEcCCeEEe
Confidence 455566677777777777777765
No 163
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=88.35 E-value=0.69 Score=47.52 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=25.6
Q ss_pred eeEEECCCcEEeee-EEEE-ecCCCceeeCCCCeeec---ceecCC
Q 012172 426 GDVWFGANITLKGK-VTIA-AKSGEKLEIPDGAVLEN---KEINGP 466 (469)
Q Consensus 426 G~v~fg~~V~i~g~-~~I~-~~~~~~~~I~~~s~le~---~~v~~~ 466 (469)
.+++++++++|.++ +.|. +..++.+.|++++.+++ .++|.+
T Consensus 303 ~~s~i~~~~~i~~~~~~~~~~ii~~~~~i~~~~~~~~~~~~~~g~~ 348 (353)
T TIGR01208 303 EHSIVLDESVIEGVQARIVDSVIGKKVRIKGNRRRPGDLRLTIGDY 348 (353)
T ss_pred EeeEEcCCCEEcCCcceeecCEEcCCCEECCCcccccccceEEcCC
Confidence 37777888888766 3554 33455577777777753 345443
No 164
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=88.13 E-value=0.95 Score=38.46 Aligned_cols=11 Identities=0% Similarity=0.081 Sum_probs=4.1
Q ss_pred ECCCcEEeeeE
Q 012172 430 FGANITLKGKV 440 (469)
Q Consensus 430 fg~~V~i~g~~ 440 (469)
+|+++.|+.++
T Consensus 70 Ig~~~~Ig~~~ 80 (119)
T cd03358 70 VKRGASIGANA 80 (119)
T ss_pred ECCCcEECcCC
Confidence 33333333333
No 165
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=87.98 E-value=0.55 Score=46.45 Aligned_cols=24 Identities=13% Similarity=0.219 Sum_probs=17.0
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA 443 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~ 443 (469)
++++|.|++++|++++|..+++|-
T Consensus 40 ~~~~I~~~~~IG~~~~I~~~a~Ig 63 (255)
T PRK12461 40 PHAVILGPTRIGKNNKIHQGAVVG 63 (255)
T ss_pred cCCEEeCCCEECCCCEEccCcEeC
Confidence 566777777777777777777664
No 166
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=87.85 E-value=5.3 Score=42.38 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=16.5
Q ss_pred EEEEeEEEeHHHHHHHHHh
Q 012172 292 FNTNNLWVNLKAIKRLVEA 310 (469)
Q Consensus 292 ~Nt~~~~~~l~~L~~~l~~ 310 (469)
-.+|+++++-++.++++..
T Consensus 141 ldsG~~~~s~~~~e~L~~~ 159 (414)
T PF07959_consen 141 LDSGIVFFSSKAVESLLYL 159 (414)
T ss_pred ccccceeccHHHHHHHHHh
Confidence 3889999999999998875
No 167
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=87.78 E-value=0.65 Score=44.36 Aligned_cols=48 Identities=8% Similarity=0.069 Sum_probs=33.2
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecceecCCCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENKEINGPGD 468 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~~v~~~~~ 468 (469)
.+..|+ ++.+|++++|+.+|+|. ...|+.+.|.+++++.++.|+.++.
T Consensus 13 ~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~ 61 (204)
T TIGR03308 13 PTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCS 61 (204)
T ss_pred CCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCE
Confidence 345554 36788888888888877 3456667777887777777776654
No 168
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=87.70 E-value=1.1 Score=37.84 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=14.1
Q ss_pred ceEEEeeEEECCCcEEeeeEEEE
Q 012172 421 SLKVTGDVWFGANITLKGKVTIA 443 (469)
Q Consensus 421 ~l~v~G~v~fg~~V~i~g~~~I~ 443 (469)
...+.|.+++|+++.|+.++.|.
T Consensus 23 ~~~i~g~v~IG~~~~Ig~~~~I~ 45 (101)
T cd05635 23 FAVIEGPVYIGPGSRVKMGARIY 45 (101)
T ss_pred CCEEeCCCEECCCCEECCCCEEe
Confidence 44556666666666666666555
No 169
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=87.65 E-value=0.59 Score=49.66 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=28.0
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE-----------------ecCCCceeeCCCCeee-cceecCCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA-----------------AKSGEKLEIPDGAVLE-NKEINGPG 467 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~-----------------~~~~~~~~I~~~s~le-~~~v~~~~ 467 (469)
.+++|.|++++|+++.|..+++|. +..+..+.|.++++|. +++|+.+.
T Consensus 276 ~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~ 341 (458)
T PRK14354 276 PGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEV 341 (458)
T ss_pred CCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCc
Confidence 556666777777777776666654 2334445555555555 45555544
No 170
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=87.45 E-value=0.75 Score=45.59 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=22.5
Q ss_pred eEEECCCcEEeeeEEEEec---------CCCceeeCCCCeee-cceecCC
Q 012172 427 DVWFGANITLKGKVTIAAK---------SGEKLEIPDGAVLE-NKEINGP 466 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I~~~---------~~~~~~I~~~s~le-~~~v~~~ 466 (469)
.+.+|+++.|+.+|+|... .|+.+.|.++++|. +++|+.+
T Consensus 80 ~v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~ 129 (262)
T PRK05289 80 RLVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNH 129 (262)
T ss_pred eEEECCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCC
Confidence 4667777777777777632 34444455555553 4555443
No 171
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=87.38 E-value=0.66 Score=47.81 Aligned_cols=40 Identities=30% Similarity=0.434 Sum_probs=25.6
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeee
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLE 459 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le 459 (469)
.+++|.+++++|+++.|..+|+|. ...++.+.|.++++|.
T Consensus 141 ~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig 182 (343)
T PRK00892 141 AGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIG 182 (343)
T ss_pred CCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEe
Confidence 455566666666777776666665 2256666777777774
No 172
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=86.50 E-value=0.51 Score=37.19 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=25.6
Q ss_pred EEECCCcEEeeeEEEEec-CCCceeeCCCCeeec-ceecCCCC
Q 012172 428 VWFGANITLKGKVTIAAK-SGEKLEIPDGAVLEN-KEINGPGD 468 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~~~-~~~~~~I~~~s~le~-~~v~~~~~ 468 (469)
..+++++.|+.++.|.++ .+..+.|.+++.+.+ ++++.+.+
T Consensus 34 svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~ 76 (79)
T cd03356 34 SILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVV 76 (79)
T ss_pred CEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeE
Confidence 344556666666666633 445577777777777 77776544
No 173
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=86.42 E-value=0.36 Score=32.50 Aligned_cols=31 Identities=29% Similarity=0.394 Sum_probs=12.2
Q ss_pred EEECCCcEEeeeEEEEecCCCceeeCCCCee
Q 012172 428 VWFGANITLKGKVTIAAKSGEKLEIPDGAVL 458 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~l 458 (469)
+.+|++|.|+.++.|-...|+.+.|.++++|
T Consensus 2 v~IG~~~~ig~~~~igi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 2 VTIGDNCFIGANSTIGITIGDGVIIGAGVVI 32 (34)
T ss_dssp EEE-TTEEE-TT-EETSEE-TTEEE-TTEEE
T ss_pred eEECCCEEECcccccCCEEcCCCEECCCCEE
Confidence 4556666666655542223334444444443
No 174
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=85.84 E-value=0.9 Score=44.26 Aligned_cols=11 Identities=9% Similarity=0.428 Sum_probs=6.3
Q ss_pred EEEeHHHHHHH
Q 012172 297 LWVNLKAIKRL 307 (469)
Q Consensus 297 ~~~~l~~L~~~ 307 (469)
+|.+.+.|.+.
T Consensus 48 yW~Di~~yl~a 58 (231)
T TIGR03532 48 EWEDIEPFIEA 58 (231)
T ss_pred eHHHHHHHHHH
Confidence 67777444433
No 175
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=85.83 E-value=0.63 Score=45.36 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=15.4
Q ss_pred EEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeee
Q 012172 424 VTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLE 459 (469)
Q Consensus 424 v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le 459 (469)
|.+++++|+++.|+.++.|. +..++.+.|.++++|.
T Consensus 113 I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~ 150 (231)
T TIGR03532 113 INIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLA 150 (231)
T ss_pred cCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEc
Confidence 33444444444444444442 2233444444444443
No 176
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=85.55 E-value=0.57 Score=36.67 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=34.4
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecceecCCCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENKEINGPGD 468 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~~v~~~~~ 468 (469)
..+.|. ++.+|+++.|+.+|.|. +..+..+.|.+++.|++++|+.+.+
T Consensus 10 ~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~ 58 (79)
T cd05787 10 EGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAV 58 (79)
T ss_pred CCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCE
Confidence 344554 46777888887777776 3345668899999999888877654
No 177
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=85.53 E-value=1.3 Score=40.64 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=9.5
Q ss_pred EEEeeEEECCCcEEeeeEEEE
Q 012172 423 KVTGDVWFGANITLKGKVTIA 443 (469)
Q Consensus 423 ~v~G~v~fg~~V~i~g~~~I~ 443 (469)
+|.|++++|+++.|..+|+|.
T Consensus 13 ~i~g~v~IG~~~~I~~~a~I~ 33 (164)
T cd04646 13 EIRGDVTIGPGTVVHPRATII 33 (164)
T ss_pred EEcCceEECCCCEEcCCeEEe
Confidence 344444444444444444443
No 178
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=84.74 E-value=0.96 Score=46.34 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=34.0
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeee-cceecCCCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLE-NKEINGPGD 468 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le-~~~v~~~~~ 468 (469)
..++|.+++++|++++|..+|+|. +..|+.+.|.++++|. +++|+.+.+
T Consensus 114 ~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~ 165 (324)
T TIGR01853 114 PNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVI 165 (324)
T ss_pred CCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCE
Confidence 556677777777777777777774 4566667777777775 677766654
No 179
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=84.17 E-value=2 Score=34.11 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=30.9
Q ss_pred ceEEEeeEEECCCcEEeeeEEEEec-CCCceeeCCCCeeec-ceecCCCC
Q 012172 421 SLKVTGDVWFGANITLKGKVTIAAK-SGEKLEIPDGAVLEN-KEINGPGD 468 (469)
Q Consensus 421 ~l~v~G~v~fg~~V~i~g~~~I~~~-~~~~~~I~~~s~le~-~~v~~~~~ 468 (469)
+..|+ +..++++++|..++.|.++ .++.+.|.+++.+.+ ++|+.+.+
T Consensus 29 ~~~i~-~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~ 77 (80)
T cd05824 29 GVRLQ-RCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVT 77 (80)
T ss_pred CcEEe-eeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceE
Confidence 34444 4555677777777767633 456678888888887 77776654
No 180
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=84.15 E-value=1.8 Score=46.11 Aligned_cols=8 Identities=13% Similarity=-0.014 Sum_probs=4.0
Q ss_pred HHHHHHHH
Q 012172 302 KAIKRLVE 309 (469)
Q Consensus 302 ~~L~~~l~ 309 (469)
+.+..+++
T Consensus 200 d~i~~~i~ 207 (456)
T PRK09451 200 DIIALAHQ 207 (456)
T ss_pred HHHHHHHH
Confidence 45555554
No 181
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=84.09 E-value=1.2 Score=45.65 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=24.2
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeeec
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLEN 460 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~ 460 (469)
..++|..+|.+|+++.|.++|+|. +..|+++.|.+|++|..
T Consensus 140 ~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~ 182 (338)
T COG1044 140 AGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGA 182 (338)
T ss_pred CCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEcc
Confidence 344555555555555556666665 44666666777666643
No 182
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=83.83 E-value=6.9 Score=39.16 Aligned_cols=24 Identities=8% Similarity=0.104 Sum_probs=15.7
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA 443 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~ 443 (469)
..+.|.|.+++++++.|+.+++|.
T Consensus 102 ~~~rI~p~a~V~~ga~Ig~gavI~ 125 (272)
T PRK11830 102 AGVRVVPGAVVRRGAYIAPNVVLM 125 (272)
T ss_pred CCcEEcCCeEECCCCEECCCcEEE
Confidence 556666666666666666666555
No 183
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=83.62 E-value=1.5 Score=45.59 Aligned_cols=47 Identities=23% Similarity=0.261 Sum_probs=27.2
Q ss_pred ceEEEeeEEECCCcEEeeeEEEEec-CCCceeeCCCCeeecceecCCCC
Q 012172 421 SLKVTGDVWFGANITLKGKVTIAAK-SGEKLEIPDGAVLENKEINGPGD 468 (469)
Q Consensus 421 ~l~v~G~v~fg~~V~i~g~~~I~~~-~~~~~~I~~~s~le~~~v~~~~~ 468 (469)
.++|.+...+ +||+|+.+|.|.++ .|....|.++|.|-||.|+.+-+
T Consensus 363 ~~~v~nSilm-~nV~vg~G~~IensIIg~gA~Ig~gs~L~nC~Ig~~yv 410 (433)
T KOG1462|consen 363 RVKVANSILM-DNVVVGDGVNIENSIIGMGAQIGSGSKLKNCIIGPGYV 410 (433)
T ss_pred CcEEEeeEee-cCcEecCCcceecceecccceecCCCeeeeeEecCCcE
Confidence 3444444333 56666666666644 34446677777777777776543
No 184
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=83.45 E-value=1.4 Score=45.40 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=9.5
Q ss_pred eeEEECCCcEEeeeEEEE
Q 012172 426 GDVWFGANITLKGKVTIA 443 (469)
Q Consensus 426 G~v~fg~~V~i~g~~~I~ 443 (469)
|.|.+|++|.|+.+++|.
T Consensus 202 g~v~Ig~~v~IGa~~~I~ 219 (343)
T PRK00892 202 GRVIIGDDVEIGANTTID 219 (343)
T ss_pred ccEEECCCcEECCCcEEe
Confidence 345555555555555553
No 185
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=83.44 E-value=3 Score=39.86 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=15.7
Q ss_pred EEECCCcEEeeeEEEE--ecCCCceeeCCCCeee
Q 012172 428 VWFGANITLKGKVTIA--AKSGEKLEIPDGAVLE 459 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le 459 (469)
+++|++|.|+++++|. ...|+.+.|.++|++-
T Consensus 132 i~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~ 165 (203)
T PRK09527 132 ITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVT 165 (203)
T ss_pred eEECCCcEECCCCEEcCCCEECCCCEECCCCEEc
Confidence 4555555555555444 2344445555555543
No 186
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=83.42 E-value=1.3 Score=47.07 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=25.1
Q ss_pred EECCCcEEeeeEEEEecCCCceeeCCCCeee-cceecCCCCC
Q 012172 429 WFGANITLKGKVTIAAKSGEKLEIPDGAVLE-NKEINGPGDL 469 (469)
Q Consensus 429 ~fg~~V~i~g~~~I~~~~~~~~~I~~~s~le-~~~v~~~~~~ 469 (469)
.+|++++|.++.+..+..++.+.|.++++|. +++|+.+.+|
T Consensus 299 ~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~I 340 (450)
T PRK14360 299 QIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRI 340 (450)
T ss_pred EEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEE
Confidence 3444444433222235567778888999996 6888776643
No 187
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=83.27 E-value=2.5 Score=38.69 Aligned_cols=47 Identities=23% Similarity=0.433 Sum_probs=26.3
Q ss_pred CceEEEe----eEEECCCcEEeeeEEEEecC------CCceeeCCCCeeec-ceecCC
Q 012172 420 DSLKVTG----DVWFGANITLKGKVTIAAKS------GEKLEIPDGAVLEN-KEINGP 466 (469)
Q Consensus 420 ~~l~v~G----~v~fg~~V~i~g~~~I~~~~------~~~~~I~~~s~le~-~~v~~~ 466 (469)
.+++|.+ .+++|+++.|..+++|.+.. |+.+.|.+++.|.+ ++|+.+
T Consensus 31 ~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~ 88 (167)
T cd00710 31 PGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDN 88 (167)
T ss_pred CCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCC
Confidence 4444444 36777777777777775432 44444555555554 555444
No 188
>PLN02739 serine acetyltransferase
Probab=83.07 E-value=1.2 Score=46.03 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=17.3
Q ss_pred EEECCCcEEeeeEEEE--ecCCCceeeCCCCee
Q 012172 428 VWFGANITLKGKVTIA--AKSGEKLEIPDGAVL 458 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~l 458 (469)
+++|++|.|+.+++|. ...|+.+.|.++|++
T Consensus 258 p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV 290 (355)
T PLN02739 258 PKIGDGALLGACVTILGNISIGAGAMVAAGSLV 290 (355)
T ss_pred cEECCCCEEcCCCEEeCCeEECCCCEECCCCEE
Confidence 5555555555555554 334555566666655
No 189
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=82.94 E-value=1.3 Score=46.67 Aligned_cols=33 Identities=9% Similarity=0.182 Sum_probs=17.3
Q ss_pred EEECCCcEEeeeEEEEec-CCCceeeCCCCeeec
Q 012172 428 VWFGANITLKGKVTIAAK-SGEKLEIPDGAVLEN 460 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~~~-~~~~~~I~~~s~le~ 460 (469)
+.++++++|+.+|.|.++ .++.+.|.+++++.+
T Consensus 349 sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 349 SVLMDGVRIGRGAVVRRAILDKNVVVPPGATIGV 382 (407)
T ss_pred eEECCCCEECCCCEEEeeEECCCCEECCCCEECC
Confidence 345566666666666633 333455555555543
No 190
>PRK10191 putative acyl transferase; Provisional
Probab=82.39 E-value=1.9 Score=38.95 Aligned_cols=33 Identities=21% Similarity=0.413 Sum_probs=15.9
Q ss_pred EECCCcEEeeeEEEE--ecCCCceeeCCCCeeecc
Q 012172 429 WFGANITLKGKVTIA--AKSGEKLEIPDGAVLENK 461 (469)
Q Consensus 429 ~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~~ 461 (469)
.+|+++.|++++.|. ...|+.+.|.++|++...
T Consensus 94 ~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V~~d 128 (146)
T PRK10191 94 HIGNGVELGANVIILGDITIGNNVTVGAGSVVLDS 128 (146)
T ss_pred EECCCcEEcCCCEEeCCCEECCCCEECCCCEECCc
Confidence 444444444444444 234444555565555544
No 191
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=82.29 E-value=2.4 Score=39.60 Aligned_cols=9 Identities=22% Similarity=0.158 Sum_probs=3.3
Q ss_pred CCCcEEeee
Q 012172 431 GANITLKGK 439 (469)
Q Consensus 431 g~~V~i~g~ 439 (469)
|++++|+.+
T Consensus 71 g~~~~Ig~~ 79 (193)
T cd03353 71 GNGATVGPF 79 (193)
T ss_pred CCCCEECCc
Confidence 333333333
No 192
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=80.96 E-value=1.4 Score=38.98 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=6.9
Q ss_pred eeEEECCCcEEeeeEEE
Q 012172 426 GDVWFGANITLKGKVTI 442 (469)
Q Consensus 426 G~v~fg~~V~i~g~~~I 442 (469)
.++++|+++.|..++.|
T Consensus 48 ~~~~IG~~~~I~~~~~i 64 (139)
T cd03350 48 SCAQIGKNVHLSAGAVI 64 (139)
T ss_pred CCCEECCCCEECCCCEE
Confidence 33444444444444333
No 193
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=80.85 E-value=2.9 Score=38.36 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=21.8
Q ss_pred EeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeeec
Q 012172 425 TGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLEN 460 (469)
Q Consensus 425 ~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~ 460 (469)
.++|++|++|.|+.+++|- ...|+.+.|.++|++-.
T Consensus 116 ~~~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~ 153 (169)
T cd03357 116 AKPITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTK 153 (169)
T ss_pred cCCcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence 4466777777777666665 34455566666665543
No 194
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=80.75 E-value=2.1 Score=39.51 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=23.7
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeeec
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLEN 460 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~ 460 (469)
.++++.+++.+|+++.|+.+++|. ...++.+.|+++|++..
T Consensus 146 ~~~~i~~~~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~~v~~ 188 (201)
T TIGR03570 146 PGVTLSGGVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTK 188 (201)
T ss_pred CCCEEeCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEECC
Confidence 455566666777777777666665 22444455555555543
No 195
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=80.37 E-value=2.9 Score=34.64 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=13.4
Q ss_pred EECCCcEEeeeEEEEe--cCCCceeeCCCCeee
Q 012172 429 WFGANITLKGKVTIAA--KSGEKLEIPDGAVLE 459 (469)
Q Consensus 429 ~fg~~V~i~g~~~I~~--~~~~~~~I~~~s~le 459 (469)
.+|+++.|..++.+.. ..++.+.|.++|++.
T Consensus 56 ~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~ 88 (101)
T cd03354 56 TIGDNVVIGAGAKILGNITIGDNVKIGANAVVT 88 (101)
T ss_pred EECCCcEEcCCCEEECcCEECCCCEECCCCEEC
Confidence 3444444444444431 133444455555444
No 196
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=80.07 E-value=1.8 Score=42.30 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=18.0
Q ss_pred eEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCee
Q 012172 422 LKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVL 458 (469)
Q Consensus 422 l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~l 458 (469)
++|.++|.+|+||+|+.+|+|. .+.|....|.+|+.|
T Consensus 28 ~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~i 66 (260)
T COG1043 28 CIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASI 66 (260)
T ss_pred EEECCCcEECCCcEEcccEEEeCCeEECCCCEEeccccc
Confidence 4444455555555555555555 234444445555444
No 197
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=80.02 E-value=1.8 Score=40.74 Aligned_cols=21 Identities=10% Similarity=0.279 Sum_probs=9.0
Q ss_pred eEEEeeEEECCCcEEeeeEEE
Q 012172 422 LKVTGDVWFGANITLKGKVTI 442 (469)
Q Consensus 422 l~v~G~v~fg~~V~i~g~~~I 442 (469)
++|.+++++|+++.|..+++|
T Consensus 50 ~~i~~~~~Ig~~~~I~~~~~i 70 (205)
T cd03352 50 VTIYEGCIIGDRVIIHSGAVI 70 (205)
T ss_pred CEEcCCCEECCCcEECCCCEE
Confidence 333334444444444444444
No 198
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=79.60 E-value=1.8 Score=38.36 Aligned_cols=38 Identities=18% Similarity=0.304 Sum_probs=20.5
Q ss_pred eEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeee
Q 012172 422 LKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLE 459 (469)
Q Consensus 422 l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le 459 (469)
..|+.++.+|+++.|..++.|. +..++.+.|.++++|.
T Consensus 26 ~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~ig 65 (139)
T cd03350 26 SYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIG 65 (139)
T ss_pred CEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEEC
Confidence 4444555555555555555553 3345555566666654
No 199
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=79.35 E-value=1.5 Score=41.30 Aligned_cols=39 Identities=26% Similarity=0.410 Sum_probs=26.0
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCee
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVL 458 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~l 458 (469)
.+++|.+++++|+++.|..+++|. +..++.+.|.++++|
T Consensus 30 ~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i 70 (205)
T cd03352 30 PGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVI 70 (205)
T ss_pred CCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEE
Confidence 456677777777777777777776 345555666666666
No 200
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=79.27 E-value=2.5 Score=43.62 Aligned_cols=33 Identities=3% Similarity=0.027 Sum_probs=20.0
Q ss_pred ECCCcEEeeeEEEEec-CCCceeeCCCCeeecce
Q 012172 430 FGANITLKGKVTIAAK-SGEKLEIPDGAVLENKE 462 (469)
Q Consensus 430 fg~~V~i~g~~~I~~~-~~~~~~I~~~s~le~~~ 462 (469)
+++++.|+.++.|.++ .+..++|.+++++.+..
T Consensus 324 i~~~~~I~~~~~i~~~ii~~~~~v~~~~~~~~~~ 357 (369)
T TIGR02092 324 IMQRTVIGEGAHLENVIIDKDVVIEPNVKIAGTS 357 (369)
T ss_pred EeCCCEECCCCEEEEEEECCCCEECCCCEeCCCC
Confidence 3455555655666533 45567777777776653
No 201
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=79.17 E-value=2.4 Score=42.43 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=16.8
Q ss_pred EEECCCcEEeeeEEEE--ecCCCceeeCCCCeee
Q 012172 428 VWFGANITLKGKVTIA--AKSGEKLEIPDGAVLE 459 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le 459 (469)
+++|+||.|+.+++|. ...|+.+.|.++|++-
T Consensus 194 p~IGd~V~IGaga~Ilggv~IG~~a~IGAgSvV~ 227 (273)
T PRK11132 194 PKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVL 227 (273)
T ss_pred CEECCCcEEcCCCEEcCCCEECCCCEECCCCEEC
Confidence 3455555555555554 2345555566666553
No 202
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=79.09 E-value=4.5 Score=38.08 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=14.7
Q ss_pred eEEECCCcEEeeeEEEE--ecCCCceeeCCCCeee
Q 012172 427 DVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLE 459 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le 459 (469)
.+++|++|.|+.+|+|. ...|+.+.|.++|++.
T Consensus 130 ~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~ 164 (192)
T PRK09677 130 AVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVT 164 (192)
T ss_pred CeEEcCCcEECCCCEEcCCCEECCCCEECCCCEEC
Confidence 34444444444444443 2234444555555554
No 203
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=78.83 E-value=2.5 Score=44.78 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=9.8
Q ss_pred cEEEecCC---CChHHHHHHHHHh
Q 012172 130 PLLLMNSF---NTHDDTSKIIEKY 150 (469)
Q Consensus 130 plviMtS~---~t~e~t~~~~~~~ 150 (469)
+++++.++ .+.+.+.++++.|
T Consensus 91 ~vlv~~gD~p~i~~~~i~~l~~~~ 114 (448)
T PRK14357 91 DLLILYGDVPLISENTLKRLIEEH 114 (448)
T ss_pred eEEEEeCCcccCCHHHHHHHHHHH
Confidence 44555454 2344445555443
No 204
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=78.76 E-value=1.4 Score=46.72 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=22.5
Q ss_pred eEEECCCcEEeeeEEEEec-CCCceeeCCCCeeecc
Q 012172 427 DVWFGANITLKGKVTIAAK-SGEKLEIPDGAVLENK 461 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I~~~-~~~~~~I~~~s~le~~ 461 (469)
+++++++|+|+.+|.|.++ .++.+.|+++++|.+.
T Consensus 360 ~svi~~~~~I~~~~~i~~~ii~~~~~i~~~~~i~~~ 395 (425)
T PRK00725 360 DSVLLPDVNVGRSCRLRRCVIDRGCVIPEGMVIGED 395 (425)
T ss_pred eeEEcCCCEECCCCEEeeEEECCCCEECCCCEECCC
Confidence 4556777777777777743 4455667766666543
No 205
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=78.62 E-value=2.4 Score=41.99 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=33.2
Q ss_pred CceEEEeeEEECCCcEEeeeEEEEe----------cCCCceeeCCCC-eeecceecCCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIAA----------KSGEKLEIPDGA-VLENKEINGPG 467 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~~----------~~~~~~~I~~~s-~le~~~v~~~~ 467 (469)
...++.+.+.+|+|+.|+|++.|-. .+++.+-|.++| ++||..|+.++
T Consensus 149 ~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~ 207 (271)
T COG2171 149 GRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGC 207 (271)
T ss_pred eeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCCc
Confidence 5677777888888888888887762 244555566666 66776666654
No 206
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=78.47 E-value=1.7 Score=43.35 Aligned_cols=22 Identities=14% Similarity=0.296 Sum_probs=10.2
Q ss_pred ceEEEeeEEECCCcEEeeeEEE
Q 012172 421 SLKVTGDVWFGANITLKGKVTI 442 (469)
Q Consensus 421 ~l~v~G~v~fg~~V~i~g~~~I 442 (469)
.++|+-+|++|.++.|.++|+|
T Consensus 173 ~ViIgDnv~IGa~a~I~~GV~I 194 (269)
T TIGR00965 173 PTIIEDNCFIGARSEIVEGVIV 194 (269)
T ss_pred CeEECCCCEECCCCEEcCCCEE
Confidence 3444444444444444444443
No 207
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=78.24 E-value=2.4 Score=43.50 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=12.9
Q ss_pred EEECCCcEEeeeEEEE-ecCCCceeeCCCCee
Q 012172 428 VWFGANITLKGKVTIA-AKSGEKLEIPDGAVL 458 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~l 458 (469)
+.+++++.|+.+|.|. +-.|+.+.|.++++|
T Consensus 328 sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~i 359 (361)
T TIGR02091 328 SVIMGDVGIGRGAVIRNAIIDKNVRIGEGVVI 359 (361)
T ss_pred eEEeCCCEECCCCEEeeeEECCCCEECCCCEe
Confidence 3444444444444444 222333444444433
No 208
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=77.05 E-value=5.8 Score=33.41 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=25.0
Q ss_pred EEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeeec
Q 012172 423 KVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLEN 460 (469)
Q Consensus 423 ~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~ 460 (469)
.+.+.+.+|+++.|+.+++|. ...++...|.++|++..
T Consensus 52 ~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v~~ 91 (107)
T cd05825 52 LITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVR 91 (107)
T ss_pred eecCCEEECCCCEECCCCEECCCCEECCCCEECCCCEEeC
Confidence 345677777777777777776 34555566666666644
No 209
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=76.93 E-value=2.6 Score=32.36 Aligned_cols=19 Identities=11% Similarity=0.246 Sum_probs=14.1
Q ss_pred ceEEEeeEEECCCcEEeee
Q 012172 421 SLKVTGDVWFGANITLKGK 439 (469)
Q Consensus 421 ~l~v~G~v~fg~~V~i~g~ 439 (469)
.++|..++.+++++.|.+.
T Consensus 18 ~~~Ig~~~~I~~~~~i~~~ 36 (78)
T cd00208 18 PVVIGDNVNIGPGAVIGAA 36 (78)
T ss_pred cEEECCCCEECCCCEEEec
Confidence 5777777788887777765
No 210
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=76.80 E-value=3.6 Score=37.73 Aligned_cols=7 Identities=29% Similarity=0.748 Sum_probs=2.5
Q ss_pred ECCCcEE
Q 012172 430 FGANITL 436 (469)
Q Consensus 430 fg~~V~i 436 (469)
+|++|.|
T Consensus 85 IG~~v~I 91 (169)
T cd03357 85 IGDNVLI 91 (169)
T ss_pred ECCCCEE
Confidence 3333333
No 211
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=76.33 E-value=3 Score=43.26 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=33.3
Q ss_pred eEEECCCcEEeeeEEEEec-CCCceeeCCCCeeec-----ceecCCCCC
Q 012172 427 DVWFGANITLKGKVTIAAK-SGEKLEIPDGAVLEN-----KEINGPGDL 469 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I~~~-~~~~~~I~~~s~le~-----~~v~~~~~~ 469 (469)
+++++++++|+.+|+|.++ .++.+.|++++++.+ .+|+.+.+|
T Consensus 325 ~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~~~~~~ig~~~~~ 373 (380)
T PRK05293 325 DSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGGGKEVITVIGENEVI 373 (380)
T ss_pred CCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcCCCceeEEEeCCCCC
Confidence 4456777888888888844 566789999999998 788888765
No 212
>PLN02357 serine acetyltransferase
Probab=75.98 E-value=3.3 Score=42.93 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=10.3
Q ss_pred eEEEeeEEECCCcEEeeeEEE
Q 012172 422 LKVTGDVWFGANITLKGKVTI 442 (469)
Q Consensus 422 l~v~G~v~fg~~V~i~g~~~I 442 (469)
++|..++++|+||+|..+|+|
T Consensus 247 iVIGe~avIGdnV~I~~gVtI 267 (360)
T PLN02357 247 VVIGETAVVGNNVSILHNVTL 267 (360)
T ss_pred eEECCCCEECCCCEEeCCcee
Confidence 444444555555555554444
No 213
>PRK10502 putative acyl transferase; Provisional
Probab=75.65 E-value=6.5 Score=36.63 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=7.2
Q ss_pred eEEECCCcEEeeeEEE
Q 012172 427 DVWFGANITLKGKVTI 442 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I 442 (469)
.+++|++|.|+.+++|
T Consensus 124 ~i~Igd~~~Ig~~a~I 139 (182)
T PRK10502 124 PIVIGEGCWLAADVFV 139 (182)
T ss_pred CEEEcCCcEEcCCCEE
Confidence 3444444444444444
No 214
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=74.19 E-value=3.6 Score=27.26 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=11.8
Q ss_pred CceEEEeeEEECCCcEEeeeEEE
Q 012172 420 DSLKVTGDVWFGANITLKGKVTI 442 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I 442 (469)
...+|.+++.+|+++.|..+++|
T Consensus 12 ~~~~i~~~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 12 PNAVIGGGVVIGDNCVIGPGVVI 34 (36)
T ss_dssp TTEEEETTEEE-TTEEEETTEEE
T ss_pred CCcEecCCCEECCCCEEcCCCEE
Confidence 34555555555555555555554
No 215
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=73.92 E-value=5.5 Score=39.40 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=9.6
Q ss_pred eEEECCCcEEeeeEEEE
Q 012172 427 DVWFGANITLKGKVTIA 443 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I~ 443 (469)
.+.+|++++|+.+|+|.
T Consensus 77 ~v~IG~~~~I~e~vtI~ 93 (255)
T PRK12461 77 RLEIGDRNVIREGVTIH 93 (255)
T ss_pred eeEECCceEECCccEEe
Confidence 35555555555555554
No 216
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=73.91 E-value=13 Score=34.85 Aligned_cols=37 Identities=24% Similarity=0.469 Sum_probs=23.1
Q ss_pred EEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeee
Q 012172 423 KVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLE 459 (469)
Q Consensus 423 ~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le 459 (469)
.+.+++.+|++|.|+++|+|. ...|+.++|.++|++.
T Consensus 125 ~~~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~ 163 (183)
T PRK10092 125 ELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVT 163 (183)
T ss_pred eecCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEc
Confidence 344567777777777777665 4455556666666553
No 217
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=72.83 E-value=5.2 Score=33.11 Aligned_cols=48 Identities=19% Similarity=0.193 Sum_probs=33.2
Q ss_pred CceEEEe--eEEECCCcEEeeeEEEEec---------------CCCceeeCCCCee-ecceecCCC
Q 012172 420 DSLKVTG--DVWFGANITLKGKVTIAAK---------------SGEKLEIPDGAVL-ENKEINGPG 467 (469)
Q Consensus 420 ~~l~v~G--~v~fg~~V~i~g~~~I~~~---------------~~~~~~I~~~s~l-e~~~v~~~~ 467 (469)
.++.|.+ .+++|+++.|+.+|+|.+. ...++.|.+++.+ .++.+..+.
T Consensus 12 ~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~ 77 (109)
T cd04647 12 PGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGV 77 (109)
T ss_pred CCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCC
Confidence 5666777 8888888888888888743 2345667777777 556665544
No 218
>PLN02694 serine O-acetyltransferase
Probab=72.36 E-value=4.7 Score=40.67 Aligned_cols=48 Identities=23% Similarity=0.366 Sum_probs=27.3
Q ss_pred ceEEEeeEEECCCcEEeeeEEEEe----------cCCCceeeCCCCee-ecceecCCCC
Q 012172 421 SLKVTGDVWFGANITLKGKVTIAA----------KSGEKLEIPDGAVL-ENKEINGPGD 468 (469)
Q Consensus 421 ~l~v~G~v~fg~~V~i~g~~~I~~----------~~~~~~~I~~~s~l-e~~~v~~~~~ 468 (469)
.++|..++.+|+||+|..+|+|.+ ..|+.+.|.+++.| .+.+|+.+..
T Consensus 180 GVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~ 238 (294)
T PLN02694 180 GVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAK 238 (294)
T ss_pred CeEECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEECCeeEECCCCEECCCCE
Confidence 455555666666666666666642 23445556666655 5556655543
No 219
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=70.83 E-value=4.2 Score=43.25 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=12.7
Q ss_pred eeeCCCCeeecceecCCCC
Q 012172 450 LEIPDGAVLENKEINGPGD 468 (469)
Q Consensus 450 ~~I~~~s~le~~~v~~~~~ 468 (469)
+.|+++|++++++|+.+..
T Consensus 374 ~~Ig~~~~i~~~vI~~~v~ 392 (436)
T PLN02241 374 IGIGENTKIRNAIIDKNAR 392 (436)
T ss_pred eEECCCCEEcceEecCCCE
Confidence 3677777777777765543
No 220
>PRK10191 putative acyl transferase; Provisional
Probab=70.31 E-value=6.1 Score=35.73 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=12.4
Q ss_pred ceEEEeeEEECCCcEEeeeEEEE
Q 012172 421 SLKVTGDVWFGANITLKGKVTIA 443 (469)
Q Consensus 421 ~l~v~G~v~fg~~V~i~g~~~I~ 443 (469)
.++|.+++.+|+||.|..+|+|-
T Consensus 61 ~i~I~~~~~IGd~~~I~h~v~IG 83 (146)
T PRK10191 61 AVVINKNVVAGDDFTIRHGVTIG 83 (146)
T ss_pred eEEECCCcEECCCCEECCCCEEC
Confidence 34555555555555555555553
No 221
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=68.98 E-value=4 Score=38.25 Aligned_cols=7 Identities=43% Similarity=1.004 Sum_probs=3.3
Q ss_pred eCCCCee
Q 012172 452 IPDGAVL 458 (469)
Q Consensus 452 I~~~s~l 458 (469)
|+++++.
T Consensus 166 i~~~~i~ 172 (183)
T PRK10092 166 VPDNVVV 172 (183)
T ss_pred cCCCcEE
Confidence 4444444
No 222
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=68.60 E-value=8.8 Score=35.83 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=15.3
Q ss_pred eEEECCCcEEeeeEEEE-ecCCCceeeCCCCee
Q 012172 427 DVWFGANITLKGKVTIA-AKSGEKLEIPDGAVL 458 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~l 458 (469)
.+++|++|+|+-.++|. |..++.+-|.=+|++
T Consensus 72 p~~IG~~vtIGH~aivHGc~Ig~~~lIGmgA~v 104 (176)
T COG0663 72 PVTIGDDVTIGHGAVVHGCTIGDNVLIGMGATV 104 (176)
T ss_pred CeEECCCcEEcCccEEEEeEECCCcEEecCceE
Confidence 45555555555555555 334444444444433
No 223
>PLN02739 serine acetyltransferase
Probab=67.64 E-value=5.7 Score=41.07 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=10.2
Q ss_pred ceEEEeeEEECCCcEEeeeEEEE
Q 012172 421 SLKVTGDVWFGANITLKGKVTIA 443 (469)
Q Consensus 421 ~l~v~G~v~fg~~V~i~g~~~I~ 443 (469)
+.+|-|++.+|+|+.|+++++|.
T Consensus 269 gA~IlG~V~IGd~aiIGAGSVV~ 291 (355)
T PLN02739 269 CVTILGNISIGAGAMVAAGSLVL 291 (355)
T ss_pred CCEEeCCeEECCCCEECCCCEEC
Confidence 33344444444444444444443
No 224
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=66.71 E-value=12 Score=35.47 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=14.1
Q ss_pred EECCCcEEeeeEEEE--ecCCCceeeCCCCee
Q 012172 429 WFGANITLKGKVTIA--AKSGEKLEIPDGAVL 458 (469)
Q Consensus 429 ~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~l 458 (469)
++|+++.|+.+++|. ...|+...|.++|++
T Consensus 90 vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V 121 (196)
T PRK13627 90 VIGRDALVGMNSVIMDGAVIGEESIVAAMSFV 121 (196)
T ss_pred EECCCCEECcCCccCCCcEECCCCEEcCCCEE
Confidence 455555555554443 223444444454444
No 225
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=66.40 E-value=6.8 Score=37.11 Aligned_cols=8 Identities=38% Similarity=0.551 Sum_probs=3.2
Q ss_pred eeeCCCCe
Q 012172 450 LEIPDGAV 457 (469)
Q Consensus 450 ~~I~~~s~ 457 (469)
+.|.++||
T Consensus 144 akIGA~sV 151 (194)
T COG1045 144 AKIGAGSV 151 (194)
T ss_pred CEECCCce
Confidence 33444443
No 226
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=66.31 E-value=5.7 Score=33.46 Aligned_cols=8 Identities=25% Similarity=0.422 Sum_probs=3.7
Q ss_pred eCCCCeee
Q 012172 452 IPDGAVLE 459 (469)
Q Consensus 452 I~~~s~le 459 (469)
++++++.-
T Consensus 93 ~~~~~~~~ 100 (107)
T cd05825 93 LPAWTVYA 100 (107)
T ss_pred CCCCCEEE
Confidence 44554443
No 227
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=65.73 E-value=10 Score=36.28 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=6.7
Q ss_pred EEECCCcEEeeeEEE
Q 012172 428 VWFGANITLKGKVTI 442 (469)
Q Consensus 428 v~fg~~V~i~g~~~I 442 (469)
+.||++|.|+.+|.|
T Consensus 96 I~IGd~v~Ig~~v~I 110 (203)
T PRK09527 96 VTIGDNVLIAPNVTL 110 (203)
T ss_pred EEECCCCEECCCCEE
Confidence 444444444444444
No 228
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=65.25 E-value=7.6 Score=35.49 Aligned_cols=30 Identities=17% Similarity=0.333 Sum_probs=13.4
Q ss_pred EECCCcEEeeeEEEEe--cCCCceeeCCCCee
Q 012172 429 WFGANITLKGKVTIAA--KSGEKLEIPDGAVL 458 (469)
Q Consensus 429 ~fg~~V~i~g~~~I~~--~~~~~~~I~~~s~l 458 (469)
++|++|.|+.+++|.. ..|+.+.|.++|++
T Consensus 115 ~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V 146 (162)
T TIGR01172 115 TVGEGVMIGAGAKVLGNIEVGENAKIGANSVV 146 (162)
T ss_pred EECCCcEEcCCCEEECCcEECCCCEECCCCEE
Confidence 3444444444444442 23444555555544
No 229
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=64.75 E-value=6.1 Score=40.05 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=12.1
Q ss_pred eEEEeeEEECCCcEEeeeEEE
Q 012172 422 LKVTGDVWFGANITLKGKVTI 442 (469)
Q Consensus 422 l~v~G~v~fg~~V~i~g~~~I 442 (469)
.+|+.+|++|+++.|.+++.|
T Consensus 194 g~I~HdvvIGd~~~IgpGvsI 214 (319)
T TIGR03535 194 GRISAGVVVGDGSDIGGGASI 214 (319)
T ss_pred EEEccCCEECCCCEECCCcee
Confidence 445556666666666665553
No 230
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=64.01 E-value=6.9 Score=41.54 Aligned_cols=42 Identities=17% Similarity=0.307 Sum_probs=32.9
Q ss_pred eEEEeeEEECCCcEEeeeEEEE-ecCCCceeeCCCCeeecceecC
Q 012172 422 LKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLENKEING 465 (469)
Q Consensus 422 l~v~G~v~fg~~V~i~g~~~I~-~~~~~~~~I~~~s~le~~~v~~ 465 (469)
..+. ++.+|++++| .+|.|. +..+..+.|.++++|++++|.+
T Consensus 304 ~~~~-~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~~svi~~ 346 (429)
T PRK02862 304 ATIT-ESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMG 346 (429)
T ss_pred cEEE-eCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEEeeEEec
Confidence 3444 4789999999 566666 5577779999999999998865
No 231
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=61.36 E-value=6.2 Score=36.39 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=16.9
Q ss_pred EeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCee
Q 012172 425 TGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVL 458 (469)
Q Consensus 425 ~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~l 458 (469)
.++++||++|.|+.+++|- -+.|+..+|.++|+.
T Consensus 122 ~~~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVV 157 (190)
T COG0110 122 AGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVV 157 (190)
T ss_pred cCCeEECCCeEEcCccEECCCEEECCCcEEeeCCEE
Confidence 3445555555555555554 133444455555554
No 232
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=58.89 E-value=12 Score=37.31 Aligned_cols=8 Identities=38% Similarity=0.987 Sum_probs=4.0
Q ss_pred eeCCCCee
Q 012172 451 EIPDGAVL 458 (469)
Q Consensus 451 ~I~~~s~l 458 (469)
.||++||.
T Consensus 224 ~vp~~svv 231 (269)
T TIGR00965 224 RVPAGSVV 231 (269)
T ss_pred ecCCCcEE
Confidence 45555554
No 233
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=58.75 E-value=9.5 Score=34.61 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=16.5
Q ss_pred EEECCCcEEeeeEEEEecCCCceeeCCCCee
Q 012172 428 VWFGANITLKGKVTIAAKSGEKLEIPDGAVL 458 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~l 458 (469)
|.+|+++.|+.++.|....|+.++|.+++++
T Consensus 74 V~IG~~~~IG~ga~Igv~IG~~~vIGaGsvV 104 (147)
T cd04649 74 ISIGKRCLLGANSGIGISLGDNCIVEAGLYV 104 (147)
T ss_pred EEECCCCEECCCCEEeEEECCCCEECCCCEE
Confidence 5666666666555554444444555555543
No 234
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=58.05 E-value=13 Score=33.63 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=8.9
Q ss_pred eeEEECCCcEEeeeEEEE
Q 012172 426 GDVWFGANITLKGKVTIA 443 (469)
Q Consensus 426 G~v~fg~~V~i~g~~~I~ 443 (469)
.++.+|.++.|+..|.|-
T Consensus 46 ~~a~Ighd~~IG~~~~I~ 63 (147)
T cd04649 46 SGVIVGKGSDVGGGASIM 63 (147)
T ss_pred CCEEECCCCEECCCCEEE
Confidence 444555555555544444
No 235
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=58.02 E-value=3.9e+02 Score=31.80 Aligned_cols=43 Identities=16% Similarity=0.397 Sum_probs=32.5
Q ss_pred CceEEEeeEEECCCcEEeeeEEEEecCCC--ceeeCCCCeeeccee
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIAAKSGE--KLEIPDGAVLENKEI 463 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~~~~~~--~~~I~~~s~le~~~v 463 (469)
+++.|| ++++|.+++|+++|||.+.... .++||++++|..--+
T Consensus 348 ~s~~vE-~s~l~~~~~ig~~~Iisgv~~~~~~~~vP~~~ci~~vpl 392 (974)
T PRK13412 348 ATLWIE-NSHVGEGWKLASRSIITGVPENSWNLDLPEGVCIDVVPV 392 (974)
T ss_pred CeEEEE-eeEecCCeEEcCCcEEecccccccceecCCCcEEEEEEc
Confidence 445555 4688899999999999866433 489999999977554
No 236
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=57.41 E-value=1.2e+02 Score=25.74 Aligned_cols=106 Identities=16% Similarity=0.280 Sum_probs=54.6
Q ss_pred cccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEEEEecCcceecCCCCcccCCCCC
Q 012172 102 IEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGK 181 (469)
Q Consensus 102 ~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~f~Q~~~P~l~~~~~~~~~~~~~ 181 (469)
+|+-.+..+|...++.+++.. ..+.-++|..... .+.|.+.++++......+.++.+..
T Consensus 4 ip~~n~~~~l~~~l~sl~~q~---~~~~eiivvdd~s-~d~~~~~~~~~~~~~~~i~~i~~~~----------------- 62 (169)
T PF00535_consen 4 IPTYNEAEYLERTLESLLKQT---DPDFEIIVVDDGS-TDETEEILEEYAESDPNIRYIRNPE----------------- 62 (169)
T ss_dssp EEESS-TTTHHHHHHHHHHHS---GCEEEEEEEECS--SSSHHHHHHHHHCCSTTEEEEEHCC-----------------
T ss_pred EEeeCCHHHHHHHHHHHhhcc---CCCEEEEEecccc-ccccccccccccccccccccccccc-----------------
Confidence 344345567777777777662 2245666654443 4567777777542223466555541
Q ss_pred CCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc-ccccccHHHHHHHHHcCCcc
Q 012172 182 TDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDLKILNHLIQNKNEY 243 (469)
Q Consensus 182 ~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN-L~~~~dp~~Lg~~~~~~~~~ 243 (469)
..|.+..+ . .-+.....+|+++++.|. +-...-..++.++.+...++
T Consensus 63 -------n~g~~~~~----n----~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~ 110 (169)
T PF00535_consen 63 -------NLGFSAAR----N----RGIKHAKGEYILFLDDDDIISPDWLEELVEALEKNPPDV 110 (169)
T ss_dssp -------CSHHHHHH----H----HHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEE
T ss_pred -------cccccccc----c----ccccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcE
Confidence 01222222 1 123334456999999999 44432235566666544444
No 237
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=57.19 E-value=10 Score=31.34 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=12.6
Q ss_pred ceEEEeeEEECCCcEEeeeEEEE
Q 012172 421 SLKVTGDVWFGANITLKGKVTIA 443 (469)
Q Consensus 421 ~l~v~G~v~fg~~V~i~g~~~I~ 443 (469)
.++|..++.+|+++.|..++.|.
T Consensus 22 ~~~ig~~~~Ig~~~~i~~~~~i~ 44 (101)
T cd03354 22 GIVIGETAVIGDNCTIYQGVTLG 44 (101)
T ss_pred eEEECCCCEECCCCEEcCCCEEC
Confidence 34444456666666665555554
No 238
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=57.18 E-value=17 Score=35.70 Aligned_cols=40 Identities=25% Similarity=0.342 Sum_probs=27.4
Q ss_pred CceEEEeeEEECCCcEEeeeEEEEec------CCC--ceeeCCCCeee
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIAAK------SGE--KLEIPDGAVLE 459 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~~~------~~~--~~~I~~~s~le 459 (469)
++++|+|.+++|+|.+|-..+.|-.. .|+ .+.|.+++.|-
T Consensus 44 shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~IR 91 (260)
T COG1043 44 SHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTIR 91 (260)
T ss_pred ccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCCeEe
Confidence 78888888888888888877766522 222 26677776663
No 239
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=56.97 E-value=11 Score=42.87 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=7.2
Q ss_pred eEEECCCcEEeeeEEE
Q 012172 427 DVWFGANITLKGKVTI 442 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I 442 (469)
++++|+++.|+.+++|
T Consensus 645 ~v~IG~~~~IG~~a~V 660 (695)
T TIGR02353 645 TVTIGDGATLGPGAIV 660 (695)
T ss_pred CeEECCCCEECCCCEE
Confidence 3444444444444444
No 240
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=55.77 E-value=36 Score=32.02 Aligned_cols=103 Identities=12% Similarity=0.207 Sum_probs=60.6
Q ss_pred CCCCchHHHHHHHHHHhhhhc-CCcccEEEecCCC-ChHHHHHHHHHhcCCCCceEEEEecCcceecC--CCCcccCCCC
Q 012172 105 RNGLTFLDLIVIQIENLNAKY-GCNVPLLLMNSFN-THDDTSKIIEKYSKSNVEIHTFNQSQYPRLCA--DDFVPLPCKG 180 (469)
Q Consensus 105 ~~gks~L~~~~~~i~~l~~~~-~~~iplviMtS~~-t~e~t~~~~~~~~g~~~~i~~f~Q~~~P~l~~--~~~~~~~~~~ 180 (469)
..+-++.+-.++.+.+|+..+ ...||++.---.. ..++-+..+++..|.+.+-.=..|.-+-.+.. ++.++..|
T Consensus 47 ~~~~~~~~~li~Ni~~Lr~~~~~~giPVvyTaqp~~qs~~draLL~d~WGpgl~~~p~~~~vv~~l~P~~~D~vL~kw-- 124 (218)
T COG1535 47 GENCPLMEQLIANIAKLRIWCKQAGIPVVYTAQPGEQSPEDRALLKDFWGPGLTASPEQQKVVDELAPGADDTVLTKW-- 124 (218)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHcCCcEEEEecCCcCCHHHHHHHHHhcCCCCCCChhhhhhHHhcCCCCCceEEeee--
Confidence 356668888899999887432 1368887633332 33455677777665332111112222222211 11222221
Q ss_pred CCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcc
Q 012172 181 KTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN 223 (469)
Q Consensus 181 ~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DN 223 (469)
-|.|+++|.+++.|.+.|+..+.|..+=-
T Consensus 125 --------------rYsAF~~s~Llq~lr~~grdQLIItGVya 153 (218)
T COG1535 125 --------------RYSAFHRSPLLQMLREKGRDQLIITGVYA 153 (218)
T ss_pred --------------ehhhhhcChHHHHHHHcCCCcEEEeehhh
Confidence 28899999999999999999887766544
No 241
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=55.32 E-value=15 Score=38.60 Aligned_cols=40 Identities=10% Similarity=0.240 Sum_probs=18.7
Q ss_pred ceEEEeeEEECCCcEEeeeEEEEec-CCCceeeCCCCeeecc
Q 012172 421 SLKVTGDVWFGANITLKGKVTIAAK-SGEKLEIPDGAVLENK 461 (469)
Q Consensus 421 ~l~v~G~v~fg~~V~i~g~~~I~~~-~~~~~~I~~~s~le~~ 461 (469)
..+|+..|.+ .+|.|+.+|+|+.. .++.++|++|.+|.+.
T Consensus 323 gs~i~~svim-~~~~IG~~~~l~~aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 323 GSVIENSVIM-PDVEIGEGAVLRRAIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred CCEEEeeEEe-CCcEECCCCEEEEEEeCCCcEeCCCcEEcCC
Confidence 3334444444 44555555555522 3333555555555443
No 242
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=54.39 E-value=9.2 Score=36.46 Aligned_cols=14 Identities=36% Similarity=0.529 Sum_probs=6.5
Q ss_pred CCceeeCCCCeeec
Q 012172 447 GEKLEIPDGAVLEN 460 (469)
Q Consensus 447 ~~~~~I~~~s~le~ 460 (469)
|..++|.+++++.+
T Consensus 130 g~~~~I~~gs~v~~ 143 (204)
T TIGR03308 130 GNGAVIAAGAVVTK 143 (204)
T ss_pred CCCCEECCCCEECC
Confidence 33444555555443
No 243
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=54.07 E-value=14 Score=37.44 Aligned_cols=45 Identities=18% Similarity=0.330 Sum_probs=27.5
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeeecceec
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLENKEIN 464 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~~~v~ 464 (469)
..-+|.|||++-+++++-.+..|- .++|+++.|.+|..|-+++|-
T Consensus 281 t~a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl 327 (407)
T KOG1460|consen 281 TQAEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIIL 327 (407)
T ss_pred CCceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeec
Confidence 446788888876666666555554 345555666666655555443
No 244
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=52.88 E-value=11 Score=33.89 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=14.1
Q ss_pred eEEECCCcEEeeeEEEE--ecCCCceeeCCCCee
Q 012172 427 DVWFGANITLKGKVTIA--AKSGEKLEIPDGAVL 458 (469)
Q Consensus 427 ~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~l 458 (469)
++.+|++|.|+.+|+|. ...|+.++|.++|++
T Consensus 73 ~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V 106 (145)
T cd03349 73 DVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVV 106 (145)
T ss_pred CcEECCCCEECCCCEEeCCCEECCCCEECCCCEE
Confidence 44444444444444443 223444455555554
No 245
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=51.54 E-value=12 Score=35.23 Aligned_cols=35 Identities=14% Similarity=0.366 Sum_probs=20.0
Q ss_pred CceEEEeeEEECCCcEEeeeEEEEecCCCceeeCCCCeeec
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLEN 460 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~le~ 460 (469)
.+++|.+.+++|+++.|+++++|.. .|+++++.-|
T Consensus 141 ~~~~i~~g~~Ig~~~~Iga~s~v~~------~i~~~~~~~G 175 (192)
T PRK09677 141 ENVTILPGVSIGNGCIVGANSVVTK------SIPENTVIAG 175 (192)
T ss_pred CCCEEcCCCEECCCCEECCCCEECc------ccCCCcEEEe
Confidence 3455555555555555555555542 2677777655
No 246
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=49.71 E-value=34 Score=35.08 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=14.1
Q ss_pred EEECCCcEEeeeEEEEecCCCceeeCCCCe
Q 012172 428 VWFGANITLKGKVTIAAKSGEKLEIPDGAV 457 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~ 457 (469)
|.+|+++.|+.++.|.-+.|+.++|.+|++
T Consensus 251 V~IGe~~lIGagA~IGI~IGd~~iIGAGav 280 (341)
T TIGR03536 251 ISVGEGCLLGANAGIGIPLGDRCTVEAGLY 280 (341)
T ss_pred EEECCCcEECCCCEEeeEECCCCEECCCCE
Confidence 555555555555554333444444444443
No 247
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=48.27 E-value=14 Score=37.48 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=18.0
Q ss_pred EEECCCcEEeeeEEEEecCCCceeeCCCCee
Q 012172 428 VWFGANITLKGKVTIAAKSGEKLEIPDGAVL 458 (469)
Q Consensus 428 v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~l 458 (469)
|.+|+++.|+.++.|--+.|+.++|.+|+++
T Consensus 226 V~IGe~~~IGagA~IGI~IGd~~VVGAGaVV 256 (319)
T TIGR03535 226 ISIGERCLLGANSGLGISLGDDCVVEAGLYV 256 (319)
T ss_pred EEECCCcEECCCCEECeEECCCCEECCCCEE
Confidence 6666666666666664445555555555544
No 248
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=45.19 E-value=18 Score=40.98 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=28.4
Q ss_pred ceEEEeeEEECCCcEEeeeEEEE--ecCCCceeeCCCCeeec
Q 012172 421 SLKVTGDVWFGANITLKGKVTIA--AKSGEKLEIPDGAVLEN 460 (469)
Q Consensus 421 ~l~v~G~v~fg~~V~i~g~~~I~--~~~~~~~~I~~~s~le~ 460 (469)
...+.|.+.+|+|+.|+.+|+|. ...|+.++|.++|++..
T Consensus 154 ~~l~~g~i~IG~~~~IG~~s~I~~g~~Igd~a~vgagS~V~~ 195 (695)
T TIGR02353 154 GRLHTGPVTLGRDAFIGTRSTLDIDTSIGDGAQLGHGSALQG 195 (695)
T ss_pred CceeecCcEECCCcEECCCCEEcCCCEECCCCEECCCCEecC
Confidence 33445778888888888888885 45667777777777654
No 249
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=44.32 E-value=29 Score=32.90 Aligned_cols=24 Identities=17% Similarity=0.334 Sum_probs=17.0
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA 443 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~ 443 (469)
....|=|++.+|+|++|+.++++.
T Consensus 130 agAkILG~I~IGd~akIGA~sVVl 153 (194)
T COG1045 130 AGAKILGNIEIGDNAKIGAGSVVL 153 (194)
T ss_pred CCCEEEcceEECCCCEECCCceEc
Confidence 556667777777777777766665
No 250
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=43.98 E-value=26 Score=35.93 Aligned_cols=45 Identities=16% Similarity=0.153 Sum_probs=24.6
Q ss_pred CceEEEeeEEECCCcEEeeeEEEE------ecCCCceeeCCCCeeecceecCCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIA------AKSGEKLEIPDGAVLENKEINGPG 467 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~------~~~~~~~~I~~~s~le~~~v~~~~ 467 (469)
..++|.-++.+|.++.|.+ ++. ...|+.+.|.++|.+ +-.|+.++
T Consensus 223 sGavIGhds~IG~gasIg~--tLsGg~~~~V~IGe~~lIGagA~I-GI~IGd~~ 273 (341)
T TIGR03536 223 AGVMVGKGSDLGGGCSTMG--TLSGGGNIVISVGEGCLLGANAGI-GIPLGDRC 273 (341)
T ss_pred cCCEECCCCEECCCCEEeE--EEeCCCceeEEECCCcEECCCCEE-eeEECCCC
Confidence 4555666666666666632 222 235556666666666 55554443
No 251
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=43.23 E-value=41 Score=27.90 Aligned_cols=12 Identities=33% Similarity=0.335 Sum_probs=5.0
Q ss_pred eeeCCCCeeecc
Q 012172 450 LEIPDGAVLENK 461 (469)
Q Consensus 450 ~~I~~~s~le~~ 461 (469)
+.|...+.+++.
T Consensus 70 v~i~~~~~v~G~ 81 (101)
T PF04519_consen 70 VEIYGTARVEGD 81 (101)
T ss_pred EEEeCCEEEEEE
Confidence 334444444443
No 252
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=39.40 E-value=42 Score=32.88 Aligned_cols=41 Identities=24% Similarity=0.469 Sum_probs=25.1
Q ss_pred CceEEEeeEEECCCcEEeeeEEEEecCCCceeeCCCCeeecceec
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEIN 464 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~le~~~v~ 464 (469)
.+++++++.++|+.++|+|.++..++ +.|.+.-.||+.-+.
T Consensus 67 gNV~ve~dayiGE~~sI~gkl~v~gd----Ldig~dV~Ieggfva 107 (277)
T COG4801 67 GNVIVENDAYIGEFSSIKGKLTVIGD----LDIGADVIIEGGFVA 107 (277)
T ss_pred ccEEEcCceEEeccceeeeeEEEecc----cccccceEEecCeee
Confidence 57777777777777777777777643 234444444444433
No 253
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=37.95 E-value=28 Score=31.18 Aligned_cols=35 Identities=11% Similarity=0.244 Sum_probs=21.7
Q ss_pred CceEEEeeEEECCCcEEeeeEEEEecCCCceeeCCCCeeec
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLEN 460 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~le~ 460 (469)
.+++|.+++.+|+++.|+.+++|..+ |+++++.-|
T Consensus 84 ~~~~i~~gv~Ig~~~vIgags~V~~~------v~~~~v~~G 118 (145)
T cd03349 84 HGATILPGVTIGDGAVIAAGAVVTKD------VPPYAIVGG 118 (145)
T ss_pred CCCEEeCCCEECCCCEECCCCEEccc------cCCCeEEEe
Confidence 45566666666666666666666532 677776655
No 254
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=35.46 E-value=1.1e+02 Score=29.25 Aligned_cols=50 Identities=22% Similarity=0.283 Sum_probs=32.1
Q ss_pred HHHHHHcC--CcEEEEEeCccccccccHHHHHHHHHcCCcceEEEeeeccCCCcce
Q 012172 205 LDALISQG--KEYVFAANSDNLGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGG 258 (469)
Q Consensus 205 L~~l~~~G--~~~v~v~n~DNL~~~~dp~~Lg~~~~~~~~~~~~v~~k~~~~~~~G 258 (469)
+++|.... .+-+||=|+-||+.+.+|-+-..+ .=+.+.|++-.+-|+|+|
T Consensus 87 i~~l~~~~~~~Dll~iEs~GNL~~~~sp~L~d~~----~v~VidvteGe~~P~K~g 138 (202)
T COG0378 87 IEELVLDFPDLDLLFIESVGNLVCPFSPDLGDHL----RVVVIDVTEGEDIPRKGG 138 (202)
T ss_pred HHHHhhcCCcCCEEEEecCcceecccCcchhhce----EEEEEECCCCCCCcccCC
Confidence 56676654 378999999999999887554322 123344555555667755
No 255
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=32.92 E-value=42 Score=30.41 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=11.5
Q ss_pred eeEEECCCcEEeeeEEEE
Q 012172 426 GDVWFGANITLKGKVTIA 443 (469)
Q Consensus 426 G~v~fg~~V~i~g~~~I~ 443 (469)
.-|++|.|.+|+-.|+|+
T Consensus 106 syVh~GknaviGrrCVlk 123 (184)
T KOG3121|consen 106 SYVHLGKNAVIGRRCVLK 123 (184)
T ss_pred eeeEeccceeEcCceEhh
Confidence 355666666666666666
No 256
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=32.69 E-value=2.4e+02 Score=23.10 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=25.9
Q ss_pred ccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHH
Q 012172 103 EVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEK 149 (469)
Q Consensus 103 ~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~ 149 (469)
++.....+++..++.+.+... ....++|++... .+.+.+.+.+
T Consensus 4 ~~~~~~~~l~~~l~s~~~~~~---~~~~i~i~~~~~-~~~~~~~~~~ 46 (156)
T cd00761 4 PAYNEEPYLERCLESLLAQTY---PNFEVIVVDDGS-TDGTLEILEE 46 (156)
T ss_pred eecCcHHHHHHHHHHHHhCCc---cceEEEEEeCCC-CccHHHHHHH
Confidence 443456777877777766542 245677776663 3455555554
No 257
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=32.45 E-value=11 Score=37.71 Aligned_cols=18 Identities=39% Similarity=0.735 Sum_probs=14.2
Q ss_pred ccCCCcccchhccccchH
Q 012172 188 YPPGHGDVFPSLMNSGKL 205 (469)
Q Consensus 188 ~P~GhGd~~~~L~~sg~L 205 (469)
.|.|+||+|.+|.-.++|
T Consensus 211 ~~~GtGDL~sallla~lL 228 (281)
T COG2240 211 IPNGTGDLFSALLLARLL 228 (281)
T ss_pred CCCCchHHHHHHHHHHHH
Confidence 399999999998865443
No 258
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=30.56 E-value=48 Score=30.36 Aligned_cols=10 Identities=10% Similarity=0.484 Sum_probs=7.0
Q ss_pred eeCCCCeeec
Q 012172 451 EIPDGAVLEN 460 (469)
Q Consensus 451 ~I~~~s~le~ 460 (469)
+||++++..|
T Consensus 160 dvp~~~iv~G 169 (190)
T COG0110 160 DVPPYGIVAG 169 (190)
T ss_pred ccCCCeEEeC
Confidence 4778777765
No 259
>PRK10073 putative glycosyl transferase; Provisional
Probab=30.22 E-value=3.7e+02 Score=27.31 Aligned_cols=112 Identities=15% Similarity=0.248 Sum_probs=57.3
Q ss_pred CCCccc--cccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceEEEEecCcceecCCCC
Q 012172 96 TGPKSV--IEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDF 173 (469)
Q Consensus 96 ~~PK~l--~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~~f~Q~~~P~l~~~~~ 173 (469)
..|+.- +|+-....+|.-.++.+.... + .++-++|.....| +.|.+.++++......+..+.|.
T Consensus 4 ~~p~vSVIIP~yN~~~~L~~~l~Sl~~Qt--~-~~~EIIiVdDgSt-D~t~~i~~~~~~~~~~i~vi~~~---------- 69 (328)
T PRK10073 4 STPKLSIIIPLYNAGKDFRAFMESLIAQT--W-TALEIIIVNDGST-DNSVEIAKHYAENYPHVRLLHQA---------- 69 (328)
T ss_pred CCCeEEEEEeccCCHHHHHHHHHHHHhCC--C-CCeEEEEEeCCCC-ccHHHHHHHHHhhCCCEEEEECC----------
Confidence 346543 355455567777777776432 1 2566666654433 45666666543211246655543
Q ss_pred cccCCCCCCCCcccccCCCcccchhccccchHHHHHHcCCcEEEEEeCcccccccc-HHHHHHHHHcCCcce
Q 012172 174 VPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVD-LKILNHLIQNKNEYC 244 (469)
Q Consensus 174 ~~~~~~~~~~~~~~~P~GhGd~~~~L~~sg~L~~l~~~G~~~v~v~n~DNL~~~~d-p~~Lg~~~~~~~~~~ 244 (469)
|+|.-.+ .+.| +.....+|+.++..|-...... ..++..+.+.+.+++
T Consensus 70 ------------------n~G~~~a-rN~g----l~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv 118 (328)
T PRK10073 70 ------------------NAGVSVA-RNTG----LAVATGKYVAFPDADDVVYPTMYETLMTMALEDDLDVA 118 (328)
T ss_pred ------------------CCChHHH-HHHH----HHhCCCCEEEEECCCCccChhHHHHHHHHHHhCCCCEE
Confidence 3343222 2333 2334458999999998433211 234444444455553
No 260
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=28.24 E-value=44 Score=34.41 Aligned_cols=51 Identities=6% Similarity=0.016 Sum_probs=34.2
Q ss_pred cCceEEEeeEEECCCcEEeeeEEEEec-CCCceeeCCCCeeecceecCCCCC
Q 012172 419 LDSLKVTGDVWFGANITLKGKVTIAAK-SGEKLEIPDGAVLENKEINGPGDL 469 (469)
Q Consensus 419 ~~~l~v~G~v~fg~~V~i~g~~~I~~~-~~~~~~I~~~s~le~~~v~~~~~~ 469 (469)
..++.|.+||++|.+|+|+.+|.|..+ .=....|..+|.+..+.++.+.+|
T Consensus 274 G~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~I 325 (371)
T KOG1322|consen 274 GENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPI 325 (371)
T ss_pred CCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccc
Confidence 378888888888888888887777733 222344666666666666665543
No 261
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=27.03 E-value=50 Score=30.13 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=20.4
Q ss_pred CCccccccCCC--CchHHHHHHHHHHh
Q 012172 97 GPKSVIEVRNG--LTFLDLIVIQIENL 121 (469)
Q Consensus 97 ~PK~l~~v~~g--ks~L~~~~~~i~~l 121 (469)
.+|.++++ .| +||++++++.+...
T Consensus 3 ~dK~ll~~-~g~~~~ll~~~~~~l~~~ 28 (178)
T PRK00576 3 RDKATLPL-PGGTTTLVEHVVGIVGQR 28 (178)
T ss_pred CCCEeeEe-CCCCcCHHHHHHHHHhhc
Confidence 49999999 67 99999999977643
No 262
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=26.01 E-value=87 Score=28.66 Aligned_cols=37 Identities=11% Similarity=0.250 Sum_probs=26.7
Q ss_pred CceEEEeeEEECCCcEEeeeEEEEecCCCceeeCCCCeeec
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLEN 460 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~le~ 460 (469)
+.=+|+..++.|+||++..+|++- +.+.|..+-.|+.
T Consensus 100 d~NVieskayvg~gv~vssgC~vG----A~c~v~~~q~lpe 136 (190)
T KOG4042|consen 100 DRNVIESKAYVGDGVSVSSGCSVG----AKCTVFSHQNLPE 136 (190)
T ss_pred CcceEeeeeEecCCcEEcCCceec----cceEEecccccCC
Confidence 677888899999999999999775 3344555555533
No 263
>PRK10063 putative glycosyl transferase; Provisional
Probab=25.69 E-value=6.1e+02 Score=24.44 Aligned_cols=45 Identities=13% Similarity=0.207 Sum_probs=28.7
Q ss_pred CCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhc
Q 012172 106 NGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYS 151 (469)
Q Consensus 106 ~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~ 151 (469)
.....|...++.+.++..+++.++-++|..+.. .+.|.+.++++.
T Consensus 11 N~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgS-tD~t~~i~~~~~ 55 (248)
T PRK10063 11 RNLEGIVKTHASLRHLAQDPGISFEWIVVDGGS-NDGTREFLENLN 55 (248)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcC-cccHHHHHHHhc
Confidence 445577878888876544444467777766553 455777787753
No 264
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=24.76 E-value=1.3e+02 Score=27.25 Aligned_cols=19 Identities=16% Similarity=0.455 Sum_probs=11.0
Q ss_pred CceEEEeeEEECCCcEEee
Q 012172 420 DSLKVTGDVWFGANITLKG 438 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g 438 (469)
...+|+|+.+|...++|+|
T Consensus 28 ~g~~f~G~l~f~~~l~IdG 46 (146)
T COG1664 28 AGTTFKGELVFEGPLRIDG 46 (146)
T ss_pred cCCEEEEEEEecceEEEeE
Confidence 4455666666655566655
No 265
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=24.39 E-value=3.1e+02 Score=27.90 Aligned_cols=71 Identities=21% Similarity=0.221 Sum_probs=46.9
Q ss_pred ceeEEEEcCCCCCcCCCCCCccccccCCCCchHHHHHHHHHHhhhhcCCcccEEEecCCCChHHHHHHHHHhcCCCCceE
Q 012172 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (469)
Q Consensus 79 k~avviLAGG~GTRmg~~~PK~l~~v~~gks~L~~~~~~i~~l~~~~~~~iplviMtS~~t~e~t~~~~~~~~g~~~~i~ 158 (469)
+-.+.+|=||-..+-.++ .-..+.+++++.++.+.+| ..|+|-||-.|-+++.+.|+++......+.
T Consensus 146 ~p~~avLIGG~s~~~~~~-----------~~~~~~l~~~l~~~~~~~~--~~~~vttSRRTp~~~~~~L~~~~~~~~~~~ 212 (311)
T PF06258_consen 146 RPRVAVLIGGDSKHYRWD-----------EEDAERLLDQLAALAAAYG--GSLLVTTSRRTPPEAEAALRELLKDNPGVY 212 (311)
T ss_pred CCeEEEEECcCCCCcccC-----------HHHHHHHHHHHHHHHHhCC--CeEEEEcCCCCcHHHHHHHHHhhcCCCceE
Confidence 344455558755444433 2244567777777776654 789999999999999999998664323455
Q ss_pred EEEe
Q 012172 159 TFNQ 162 (469)
Q Consensus 159 ~f~Q 162 (469)
+|.+
T Consensus 213 ~~~~ 216 (311)
T PF06258_consen 213 IWDG 216 (311)
T ss_pred EecC
Confidence 5533
No 266
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=22.02 E-value=70 Score=29.00 Aligned_cols=41 Identities=12% Similarity=0.134 Sum_probs=28.1
Q ss_pred CceEEEeeEEECCCcEEeeeEEEEec--CCCceeeCCCCeeec
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIAAK--SGEKLEIPDGAVLEN 460 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~~~--~~~~~~I~~~s~le~ 460 (469)
+.+.+.-+.++|++++|+..|.|... --....+|++|.+.+
T Consensus 106 syVh~GknaviGrrCVlkdCc~ild~tVlPpet~vppy~~~~g 148 (184)
T KOG3121|consen 106 SYVHLGKNAVIGRRCVLKDCCRILDDTVLPPETLVPPYSTIGG 148 (184)
T ss_pred eeeEeccceeEcCceEhhhheeccCCcccCcccccCCceEEcC
Confidence 56667778888888888888877722 223366777777755
No 267
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=21.92 E-value=1.2e+02 Score=24.97 Aligned_cols=38 Identities=24% Similarity=0.463 Sum_probs=23.8
Q ss_pred EEeeEEECCCcEEeeeEEEEec-CCCceeeCCCCeeecc
Q 012172 424 VTGDVWFGANITLKGKVTIAAK-SGEKLEIPDGAVLENK 461 (469)
Q Consensus 424 v~G~v~fg~~V~i~g~~~I~~~-~~~~~~I~~~s~le~~ 461 (469)
|.|++.....+.|.+++.|... ....+.|.+++.++|.
T Consensus 60 v~G~v~a~~~v~i~~~~~v~G~i~~~~l~v~~ga~i~G~ 98 (101)
T PF04519_consen 60 VDGNVEASGKVEIYGTARVEGDITAGKLEVEGGASINGN 98 (101)
T ss_pred EeEEEEECceEEEeCCEEEEEEEEECEEEEeCCCEEEEE
Confidence 5666666666777777777744 2233667777766654
No 268
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=21.62 E-value=63 Score=31.55 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=12.8
Q ss_pred CceEEEeeEEECCCcEEeeeEE
Q 012172 420 DSLKVTGDVWFGANITLKGKVT 441 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~ 441 (469)
..++|-|+|.+|+|.+|..+.+
T Consensus 211 aGvtILgnV~IGegavIaAGsv 232 (269)
T KOG4750|consen 211 AGVTILGNVTIGEGAVIAAGSV 232 (269)
T ss_pred cccEEeCCeeECCCcEEeccce
Confidence 4556666666666666664333
No 269
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=21.26 E-value=1.6e+02 Score=29.01 Aligned_cols=48 Identities=15% Similarity=0.201 Sum_probs=26.6
Q ss_pred CceEEEeeEEECCCcEEeeeEEEEec--CCCceeeCCCCeeecceec-CCCC
Q 012172 420 DSLKVTGDVWFGANITLKGKVTIAAK--SGEKLEIPDGAVLENKEIN-GPGD 468 (469)
Q Consensus 420 ~~l~v~G~v~fg~~V~i~g~~~I~~~--~~~~~~I~~~s~le~~~v~-~~~~ 468 (469)
..+.|+||+.= .+++|+..|.+.++ -+....|..||+|++..+. +.|.
T Consensus 44 e~v~i~Gdiva-~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLd 94 (277)
T COG4801 44 ERVRIYGDIVA-KDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLD 94 (277)
T ss_pred cCcEEeeeEEe-cceeeeeeeEeeccEEEcCceEEeccceeeeeEEEecccc
Confidence 56666665432 44444444444311 2234678889998887543 4443
No 270
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=21.10 E-value=1.5e+02 Score=26.90 Aligned_cols=45 Identities=16% Similarity=0.312 Sum_probs=28.4
Q ss_pred cCceEEEe----eEEECCCcEEeeeEEEEec-CCCceeeCCCCeeeccee
Q 012172 419 LDSLKVTG----DVWFGANITLKGKVTIAAK-SGEKLEIPDGAVLENKEI 463 (469)
Q Consensus 419 ~~~l~v~G----~v~fg~~V~i~g~~~I~~~-~~~~~~I~~~s~le~~~v 463 (469)
+.+++|+| +++-.+.|.|.++..+..+ ....+.|.+|+.++|...
T Consensus 72 a~~~iv~G~v~Gni~~a~~Vei~~~g~v~GdI~~~~i~v~~Ga~f~G~~~ 121 (146)
T COG1664 72 AEHLIVEGKVEGNILAAERVELYPGGRVIGDITTKEITVEEGAIFEGDCE 121 (146)
T ss_pred eCEEEEeeEEEEEEEEeeEEEEcCCcEEeeeecccEEEEccCCEEEeEEE
Confidence 45666654 4444666777766666644 344488888888888654
No 271
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=20.45 E-value=1.2e+02 Score=29.72 Aligned_cols=32 Identities=44% Similarity=0.699 Sum_probs=17.3
Q ss_pred EEEeeEEECCCcEEeeeEEEEecCCCceeeCCCCee
Q 012172 423 KVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVL 458 (469)
Q Consensus 423 ~v~G~v~fg~~V~i~g~~~I~~~~~~~~~I~~~s~l 458 (469)
.|..+|.+|.+|+|-|++.| |+..+|.+||+.
T Consensus 202 ~Igd~vliGaGvtILgnV~I----GegavIaAGsvV 233 (269)
T KOG4750|consen 202 KIGDNVLIGAGVTILGNVTI----GEGAVIAAGSVV 233 (269)
T ss_pred cccCCeEEccccEEeCCeeE----CCCcEEeccceE
Confidence 44445555555555555544 444556666654
Done!