BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012173
(469 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 98/238 (41%), Gaps = 38/238 (15%)
Query: 5 LKKFPQIVTTMKDLSELNLDGTSITEVPSSIXXXXXXXXXXXXDCKNLAR-VPSSINGLK 63
L +FP + L +D + E+P + +N R +P+SI L
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTL--ARNPLRALPASIASLN 150
Query: 64 SPKTLNLSGCCKLENVPDTLGQVES---------LEELDISETAVRRPPSSIFLMKNLRT 114
+ L++ C +L +P+ L ++ L+ L + T +R P+SI ++NL++
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKS 210
Query: 115 LSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDI 174
L + P + +G P++ L L +LDL C P
Sbjct: 211 LKIRNS----------PLSALG----------PAIHHLPKLEELDLRGCTALRN-YPPIF 249
Query: 175 GNLHSLNELYLSK-NNFVTLPASINSLLNLKELEMEDCKRLQSLP----QLPPNIIFV 227
G L L L +N +TLP I+ L L++L++ C L LP QLP N I +
Sbjct: 250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 22/177 (12%)
Query: 67 TLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSW 126
T++ +G L +PDT Q LE L ++ +R P+SI + LR LS+ C P
Sbjct: 110 TIDAAG---LXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC--PELT 164
Query: 127 HLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLS 186
L P S GL +L L L G+ ++P+ I NL +L L +
Sbjct: 165 ELPEPLASTDASG--------EHQGLVNLQSLRLEWTGI--RSLPASIANLQNLKSLKIR 214
Query: 187 KNNFVTLPASINSLLNLKELEMEDCKRLQSLPQL-----PPNIIFVKVNGCSSLVTL 238
+ L +I+ L L+EL++ C L++ P + P + +K CS+L+TL
Sbjct: 215 NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK--DCSNLLTL 269
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 70/147 (47%), Gaps = 22/147 (14%)
Query: 61 GLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPS-SIFL-MKNLRTLSLF 118
G S K L+LS + + LG +E LE LD + +++ S+FL ++NL L +
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI- 428
Query: 119 GCNGPPSWHLHLPFN--LMGKSSCLVALM---------LPSL-SGLRSLTKLDLSDCGLG 166
H + FN G SS V M LP + + LR+LT LDLS C L
Sbjct: 429 -----SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL- 482
Query: 167 EGAIPSDIGNLHSLNELYLSKNNFVTL 193
E P+ +L SL L +S NNF +L
Sbjct: 483 EQLSPTAFNSLSSLQVLNMSHNNFFSL 509
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 85/188 (45%), Gaps = 27/188 (14%)
Query: 61 GLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPS-SIFL-MKNLRTLSLF 118
G S K L+LS + + LG +E LE LD + +++ S+FL ++NL L +
Sbjct: 395 GTISLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI- 452
Query: 119 GCNGPPSWHLHLPFN--LMGKSSCLVALM---------LPSL-SGLRSLTKLDLSDCGLG 166
H + FN G SS V M LP + + LR+LT LDLS C L
Sbjct: 453 -----SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL- 506
Query: 167 EGAIPSDIGNLHSLNELYLSKNNFVTLPA----SINSLLNLK-ELEMEDCKRLQSLPQLP 221
E P+ +L SL L +S NNF +L +NSL L L + Q L P
Sbjct: 507 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 566
Query: 222 PNIIFVKV 229
++ F+ +
Sbjct: 567 SSLAFLNL 574
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 85/188 (45%), Gaps = 27/188 (14%)
Query: 61 GLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPS-SIFL-MKNLRTLSLF 118
G S K L+LS + + LG +E LE LD + +++ S+FL ++NL L +
Sbjct: 76 GTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI- 133
Query: 119 GCNGPPSWHLHLPFN--LMGKSSCLVALM---------LPSL-SGLRSLTKLDLSDCGLG 166
H + FN G SS V M LP + + LR+LT LDLS C L
Sbjct: 134 -----SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL- 187
Query: 167 EGAIPSDIGNLHSLNELYLSKNNFVTLPA----SINSLLNLK-ELEMEDCKRLQSLPQLP 221
E P+ +L SL L +S NNF +L +NSL L L + Q L P
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247
Query: 222 PNIIFVKV 229
++ F+ +
Sbjct: 248 SSLAFLNL 255
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 70/151 (46%), Gaps = 22/151 (14%)
Query: 61 GLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPS-SIFL-MKNLRTLSLF 118
G S K L+LS + + LG +E LE LD + +++ S+FL ++NL L +
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI- 428
Query: 119 GCNGPPSWHLHLPFN--LMGKSSCLVALM---------LPSL-SGLRSLTKLDLSDCGLG 166
H + FN G SS V M LP + + LR+LT LDLS C L
Sbjct: 429 -----SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL- 482
Query: 167 EGAIPSDIGNLHSLNELYLSKNNFVTLPASI 197
E P+ +L SL L ++ N ++P I
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 158 LDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQSL 217
LDLS+ + I ++I L LYL+ N+ LPA I +L NL+ L++ RL SL
Sbjct: 229 LDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSL 285
Query: 218 P 218
P
Sbjct: 286 P 286
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 146 LPS-LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLK 204
LP+ + L +L LDLS L ++P+++G+ L Y N TLP +L NL+
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQ 319
Query: 205 ELEME 209
L +E
Sbjct: 320 FLGVE 324
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 27/142 (19%)
Query: 81 DTLGQVESLEELDISETAVRR-PPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSS 139
D LEEL+++E V P + + NLRTL L +S+
Sbjct: 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL-------------------RSN 90
Query: 140 CLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSD--IGNLHSLNELYLSKNNFVTLPASI 197
L + L +GL +LTKLD+S+ + I D +L++L L + N+ V +
Sbjct: 91 RLKLIPLGVFTGLSNLTKLDISE---NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA 147
Query: 198 NSLLN-LKELEMEDCKRLQSLP 218
S LN L++L +E C L S+P
Sbjct: 148 FSGLNSLEQLTLEKCN-LTSIP 168
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 149 LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLS 186
LSG SL KL++ DC G+ A+ ++ L ++ L++S
Sbjct: 477 LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS 514
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 63/157 (40%), Gaps = 22/157 (14%)
Query: 56 PSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSIFL-MKNLRT 114
P++ GL TL+L C E P + +L+ L + + ++ P + F + NL
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTH 156
Query: 115 LSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDI 174
L L G N PS H + GL SL +L L + P
Sbjct: 157 LFLHG-NRIPSVPEH------------------AFRGLHSLDRLLLHQNHVAR-VHPHAF 196
Query: 175 GNLHSLNELYLSKNNFVTLPASI-NSLLNLKELEMED 210
+L L LYL NN LPA + L +L+ L + D
Sbjct: 197 RDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLND 233
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 138 SSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL-PAS 196
S+ L + + +GL L +LDLSD P+ L L+ L+L + L P
Sbjct: 64 SNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGL 123
Query: 197 INSLLNLKELEMEDCKRLQSLP 218
L L+ L ++D LQ+LP
Sbjct: 124 FRGLAALQYLYLQD-NNLQALP 144
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 168 GAIPSDIGNLHSLNELYLSKNNF-VTLPASINSLLNLKELEMEDCKRLQSLPQL 220
G+IP ++G+L LN L LS N +P ++++L L E+++ + +P++
Sbjct: 667 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 7 KFPQIVTTMKDLSELNLDGTSIT-EVPSSIXXXXXXXXXXXXDCKNLARVPSSINGLKSP 65
+ PQ + +K L L LD +T E+PS + + + +P I L++
Sbjct: 454 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 513
Query: 66 KTLNLSGCCKLENVPDTLGQVESLEELDIS 95
L LS N+P LG SL LD++
Sbjct: 514 AILKLSNNSFSGNIPAELGDCRSLIWLDLN 543
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 168 GAIPSDIGNLHSLNELYLSKNNF-VTLPASINSLLNLKELEMEDCKRLQSLPQL 220
G+IP ++G+L LN L LS N +P ++++L L E+++ + +P++
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 138 SSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL-PAS 196
S+ L + + +GL L +LDLSD P+ L L+ L+L + L P
Sbjct: 64 SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 123
Query: 197 INSLLNLKELEMEDCKRLQSLP 218
L L+ L ++D LQ+LP
Sbjct: 124 FRGLAALQYLYLQD-NALQALP 144
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 138 SSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL-PAS 196
S+ L + + +GL L +LDLSD P+ L L+ L+L + L P
Sbjct: 65 SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 124
Query: 197 INSLLNLKELEMEDCKRLQSLP 218
L L+ L ++D LQ+LP
Sbjct: 125 FRGLAALQYLYLQD-NALQALP 145
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 176 NLHSLNELYLSKNNFVTLPASI-NSLLNLKELEMEDCKRLQSLP 218
+L L++LYL N +LP+ + + L LKEL + + +LQS+P
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL-NTNQLQSIP 147
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 176 NLHSLNELYLSKNNFVTLPASI-NSLLNLKELEMEDCKRLQSLP 218
+L L++LYL N +LP+ + + L LKEL + + +LQS+P
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL-NTNQLQSIP 147
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 152 LRSLTKLDLSDCGLGEGAIPSDIGN-LHSLNELYLSKNNFVTLPASI-NSLLNLKELEME 209
L SLT+L L G ++P+ + N L SL L LS N +LP + + L LKEL +
Sbjct: 51 LTSLTQLYLG--GNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL- 107
Query: 210 DCKRLQSLP 218
+ +LQSLP
Sbjct: 108 NTNQLQSLP 116
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 7/128 (5%)
Query: 76 LENVPD-TLGQVESLEELDISETAVRRPPSSIFL--MKNLRTLSLFGCN--GPPSWHLHL 130
+E++P +V SL LD+ E S + NLR L+L CN P+ +
Sbjct: 119 IESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALV 178
Query: 131 PFNLMGKSSCLVALMLP-SLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNN 189
+ S + L+ P S GL SL KL L + + +L SL EL LS NN
Sbjct: 179 RLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIE-RNAFDDLKSLEELNLSHNN 237
Query: 190 FVTLPASI 197
++LP +
Sbjct: 238 LMSLPHDL 245
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 25/116 (21%)
Query: 4 QLKKFPQIVTTMKDLSELNLDGTSITEVPSSIXXXXXXXXXXXXDC---KNLARVPSSIN 60
+L K ++ T MK L +L++ S++ DC K+L + S N
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVS------------YDEKKGDCSWTKSLLSLNMSSN 409
Query: 61 GLKSP---------KTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSIF 107
L K L+L K++++P + ++E+L+EL+++ ++ P IF
Sbjct: 410 ILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQLKSVPDGIF 464
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 7/47 (14%)
Query: 149 LSGLRSLT----KLDLSDCGLGE---GAIPSDIGNLHSLNELYLSKN 188
L GL+S T KL L +C L E G +PS + +L +L EL+LS N
Sbjct: 73 LQGLQSPTCKIQKLSLQNCSLTEAGCGVLPSTLRSLPTLRELHLSDN 119
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 56/125 (44%), Gaps = 7/125 (5%)
Query: 76 LENVPD-TLGQVESLEELDISETAVRRPPSSIFL--MKNLRTLSLFGCN--GPPSWHLHL 130
+E++P +V SL LD+ E S + NLR L+L CN P+ +
Sbjct: 119 IESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALV 178
Query: 131 PFNLMGKSSCLVALMLP-SLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNN 189
+ S + L+ P S GL SL KL L + + +L SL EL LS NN
Sbjct: 179 RLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIE-RNAFDDLKSLEELNLSHNN 237
Query: 190 FVTLP 194
++LP
Sbjct: 238 LMSLP 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,612,553
Number of Sequences: 62578
Number of extensions: 552672
Number of successful extensions: 1098
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1052
Number of HSP's gapped (non-prelim): 67
length of query: 469
length of database: 14,973,337
effective HSP length: 102
effective length of query: 367
effective length of database: 8,590,381
effective search space: 3152669827
effective search space used: 3152669827
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)