Query 012173
Match_columns 469
No_of_seqs 433 out of 3398
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 23:49:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 3E-35 6.4E-40 331.8 32.8 400 4-437 600-1104(1153)
2 PLN00113 leucine-rich repeat r 99.8 2.6E-19 5.6E-24 201.5 14.3 198 14-212 138-343 (968)
3 PLN03210 Resistant to P. syrin 99.8 1.4E-18 3E-23 196.9 19.6 117 7-126 579-697 (1153)
4 PLN00113 leucine-rich repeat r 99.8 5.5E-19 1.2E-23 198.8 14.7 226 7-235 108-345 (968)
5 KOG0444 Cytoskeletal regulator 99.7 6.4E-20 1.4E-24 182.3 -4.0 236 3-240 113-380 (1255)
6 KOG0617 Ras suppressor protein 99.7 1.8E-19 3.9E-24 152.6 -5.2 160 4-211 22-183 (264)
7 KOG0444 Cytoskeletal regulator 99.7 2.6E-18 5.6E-23 170.9 -3.5 215 2-219 135-380 (1255)
8 KOG4194 Membrane glycoprotein 99.6 1.2E-17 2.6E-22 165.2 -1.0 119 2-121 206-328 (873)
9 KOG0472 Leucine-rich repeat pr 99.6 1.3E-18 2.7E-23 165.2 -7.7 204 3-211 101-307 (565)
10 KOG0472 Leucine-rich repeat pr 99.6 2.6E-18 5.6E-23 163.2 -10.1 224 2-231 54-284 (565)
11 PRK15370 E3 ubiquitin-protein 99.6 7.9E-15 1.7E-19 156.9 11.9 215 3-240 188-405 (754)
12 PRK15387 E3 ubiquitin-protein 99.6 5.3E-14 1.1E-18 149.9 16.4 210 2-240 210-419 (788)
13 KOG0617 Ras suppressor protein 99.5 1.1E-16 2.5E-21 135.6 -5.6 152 2-199 42-194 (264)
14 KOG4194 Membrane glycoprotein 99.5 3.7E-15 8E-20 147.8 1.5 208 2-211 111-351 (873)
15 PRK15387 E3 ubiquitin-protein 99.5 1.7E-13 3.6E-18 146.1 13.8 210 2-241 231-440 (788)
16 PRK15370 E3 ubiquitin-protein 99.5 1.4E-13 3.1E-18 147.3 11.0 197 2-219 208-405 (754)
17 KOG0618 Serine/threonine phosp 99.4 2.8E-15 6.1E-20 155.9 -6.2 191 15-209 240-438 (1081)
18 KOG0532 Leucine-rich repeat (L 99.3 9.5E-14 2.1E-18 137.7 -3.2 185 2-212 84-271 (722)
19 cd00116 LRR_RI Leucine-rich re 99.3 2.1E-13 4.5E-18 133.9 -1.3 212 7-233 14-261 (319)
20 cd00116 LRR_RI Leucine-rich re 99.3 3.6E-13 7.9E-18 132.1 -0.4 211 6-232 41-288 (319)
21 KOG4237 Extracellular matrix p 99.3 8.4E-14 1.8E-18 132.5 -4.8 210 3-213 77-334 (498)
22 KOG0618 Serine/threonine phosp 99.2 3.4E-13 7.3E-18 140.6 -5.4 207 2-234 250-488 (1081)
23 COG4886 Leucine-rich repeat (L 99.2 1.6E-11 3.4E-16 124.4 5.9 182 11-217 111-293 (394)
24 KOG4658 Apoptotic ATPase [Sign 99.2 1.1E-11 2.5E-16 134.8 4.7 234 2-240 532-788 (889)
25 KOG0532 Leucine-rich repeat (L 99.1 1.1E-12 2.4E-17 130.3 -6.0 202 4-232 61-270 (722)
26 COG4886 Leucine-rich repeat (L 99.1 6.3E-11 1.4E-15 120.0 5.0 173 2-199 125-298 (394)
27 KOG4658 Apoptotic ATPase [Sign 99.1 2.5E-11 5.3E-16 132.3 1.0 213 5-219 559-788 (889)
28 KOG4237 Extracellular matrix p 98.8 3.1E-10 6.6E-15 108.6 -1.7 225 3-231 56-331 (498)
29 KOG3207 Beta-tubulin folding c 98.8 3.9E-10 8.4E-15 109.2 -1.7 181 13-212 118-312 (505)
30 PF14580 LRR_9: Leucine-rich r 98.8 4.1E-09 8.8E-14 93.1 4.8 113 4-121 8-124 (175)
31 KOG3207 Beta-tubulin folding c 98.8 1.1E-09 2.3E-14 106.2 0.7 183 11-211 141-336 (505)
32 KOG1259 Nischarin, modulator o 98.8 5E-10 1.1E-14 103.5 -1.7 132 17-195 285-416 (490)
33 PF14580 LRR_9: Leucine-rich r 98.8 7.1E-09 1.5E-13 91.5 5.2 64 35-102 15-79 (175)
34 PRK15386 type III secretion pr 98.7 1.6E-07 3.5E-12 92.9 11.2 55 178-235 156-213 (426)
35 PRK15386 type III secretion pr 98.7 1.5E-07 3.3E-12 93.1 10.8 61 15-80 51-111 (426)
36 PLN03150 hypothetical protein; 98.6 6.7E-08 1.4E-12 103.2 7.5 104 18-121 420-526 (623)
37 KOG1259 Nischarin, modulator o 98.6 5.3E-09 1.1E-13 96.9 -1.0 102 86-211 283-384 (490)
38 KOG1909 Ran GTPase-activating 98.6 2.1E-09 4.6E-14 101.5 -4.3 188 10-213 86-310 (382)
39 PLN03150 hypothetical protein; 98.5 2E-07 4.4E-12 99.5 8.6 108 89-216 420-530 (623)
40 KOG2120 SCF ubiquitin ligase, 98.5 8.9E-10 1.9E-14 101.8 -8.3 105 17-121 186-297 (419)
41 KOG0531 Protein phosphatase 1, 98.4 3.7E-08 8.1E-13 100.3 -0.6 106 12-121 91-197 (414)
42 KOG1909 Ran GTPase-activating 98.4 2.6E-08 5.6E-13 94.3 -2.9 186 12-212 26-252 (382)
43 PF13855 LRR_8: Leucine rich r 98.4 4.9E-07 1.1E-11 65.4 4.3 58 16-74 1-60 (61)
44 KOG0531 Protein phosphatase 1, 98.2 1.7E-07 3.7E-12 95.5 -1.3 181 2-211 104-287 (414)
45 PF13855 LRR_8: Leucine rich r 98.1 3.7E-06 8E-11 60.8 4.3 59 39-99 1-61 (61)
46 KOG2982 Uncharacterized conser 98.0 1.5E-06 3.3E-11 80.8 1.5 216 20-240 49-286 (418)
47 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.4E-10 53.9 3.5 40 16-56 1-40 (44)
48 KOG2120 SCF ubiquitin ligase, 97.8 4E-07 8.7E-12 84.6 -6.3 112 10-121 204-324 (419)
49 KOG1859 Leucine-rich repeat pr 97.8 2E-07 4.4E-12 95.8 -10.1 117 52-191 176-292 (1096)
50 PF12799 LRR_4: Leucine Rich r 97.7 2.8E-05 6.2E-10 51.9 3.0 33 179-211 2-34 (44)
51 KOG3665 ZYG-1-like serine/thre 97.6 1.5E-05 3.3E-10 85.4 0.5 154 39-211 122-285 (699)
52 KOG1859 Leucine-rich repeat pr 97.6 2.1E-06 4.5E-11 88.6 -6.5 114 3-121 174-290 (1096)
53 KOG4341 F-box protein containi 97.5 3.7E-06 8.1E-11 81.6 -5.6 231 8-238 156-417 (483)
54 KOG3665 ZYG-1-like serine/thre 97.4 1.4E-05 3E-10 85.7 -2.9 154 16-184 122-281 (699)
55 COG5238 RNA1 Ran GTPase-activa 97.4 6.5E-05 1.4E-09 69.3 1.1 85 15-100 29-133 (388)
56 KOG1644 U2-associated snRNP A' 97.2 0.0007 1.5E-08 60.1 5.3 101 18-121 21-124 (233)
57 KOG4579 Leucine-rich repeat (L 97.1 2.4E-05 5.2E-10 64.9 -3.7 103 17-121 28-134 (177)
58 KOG4579 Leucine-rich repeat (L 97.1 3.3E-05 7.1E-10 64.1 -3.2 92 12-105 49-141 (177)
59 COG5238 RNA1 Ran GTPase-activa 96.7 0.00018 3.9E-09 66.5 -2.1 38 36-73 89-130 (388)
60 KOG1644 U2-associated snRNP A' 96.6 0.0035 7.6E-08 55.7 5.5 104 15-121 41-151 (233)
61 KOG2982 Uncharacterized conser 96.6 0.00074 1.6E-08 63.3 1.1 178 14-191 69-262 (418)
62 KOG2739 Leucine-rich acidic nu 96.5 0.0012 2.6E-08 60.9 1.6 83 37-121 41-127 (260)
63 KOG4341 F-box protein containi 96.4 0.00048 1E-08 67.3 -1.5 184 15-215 241-440 (483)
64 KOG1947 Leucine rich repeat pr 96.3 0.00028 6.1E-09 73.1 -4.2 108 15-122 187-307 (482)
65 KOG1947 Leucine rich repeat pr 96.2 0.00016 3.4E-09 75.0 -6.9 160 62-239 187-368 (482)
66 KOG2739 Leucine-rich acidic nu 96.0 0.0038 8.2E-08 57.7 2.0 84 16-101 43-130 (260)
67 PF00560 LRR_1: Leucine Rich R 95.7 0.0045 9.6E-08 34.5 0.8 20 17-36 1-20 (22)
68 PF00560 LRR_1: Leucine Rich R 94.8 0.011 2.3E-07 32.9 0.6 20 179-198 1-20 (22)
69 KOG2123 Uncharacterized conser 94.5 0.0012 2.6E-08 61.4 -6.1 80 15-98 18-99 (388)
70 PF13306 LRR_5: Leucine rich r 94.4 0.13 2.8E-06 42.6 6.7 106 7-119 2-112 (129)
71 PF13504 LRR_7: Leucine rich r 93.8 0.04 8.6E-07 28.5 1.4 16 179-194 2-17 (17)
72 PF13504 LRR_7: Leucine rich r 93.6 0.045 9.7E-07 28.3 1.4 16 17-32 2-17 (17)
73 KOG2123 Uncharacterized conser 93.3 0.0053 1.1E-07 57.2 -4.2 80 12-93 37-123 (388)
74 PF13306 LRR_5: Leucine rich r 89.9 1.1 2.4E-05 36.9 6.6 93 3-102 21-117 (129)
75 smart00370 LRR Leucine-rich re 88.5 0.39 8.4E-06 27.6 2.0 21 177-197 1-21 (26)
76 smart00369 LRR_TYP Leucine-ric 88.5 0.39 8.4E-06 27.6 2.0 21 177-197 1-21 (26)
77 smart00369 LRR_TYP Leucine-ric 87.4 0.49 1.1E-05 27.2 1.9 21 86-106 1-21 (26)
78 smart00370 LRR Leucine-rich re 87.4 0.49 1.1E-05 27.2 1.9 21 86-106 1-21 (26)
79 KOG3864 Uncharacterized conser 87.0 0.11 2.4E-06 46.4 -1.4 77 18-94 103-183 (221)
80 KOG4308 LRR-containing protein 83.7 0.0035 7.6E-08 64.6 -14.4 180 18-212 89-301 (478)
81 KOG3864 Uncharacterized conser 83.2 0.11 2.4E-06 46.4 -3.2 39 87-125 101-140 (221)
82 KOG4308 LRR-containing protein 82.1 0.0097 2.1E-07 61.4 -12.0 167 10-191 109-303 (478)
83 KOG0473 Leucine-rich repeat pr 81.0 0.03 6.5E-07 51.0 -7.7 85 35-121 38-122 (326)
84 smart00364 LRR_BAC Leucine-ric 78.1 1.5 3.2E-05 25.4 1.3 18 178-195 2-19 (26)
85 KOG0473 Leucine-rich repeat pr 74.0 0.09 2E-06 48.0 -6.7 94 5-100 30-124 (326)
86 smart00367 LRR_CC Leucine-rich 72.6 2.5 5.4E-05 24.2 1.4 14 201-214 2-15 (26)
87 smart00365 LRR_SD22 Leucine-ri 63.5 5.6 0.00012 23.0 1.6 16 16-31 2-17 (26)
88 PF13516 LRR_6: Leucine Rich r 58.8 5.4 0.00012 22.2 1.0 14 178-191 2-15 (24)
89 KOG3763 mRNA export factor TAP 48.2 26 0.00056 36.5 4.4 84 149-233 214-312 (585)
90 smart00368 LRR_RI Leucine rich 42.7 21 0.00045 20.8 1.8 14 178-191 2-15 (28)
91 PF05725 FNIP: FNIP Repeat; I 26.0 1.1E+02 0.0024 19.9 3.3 13 219-231 31-43 (44)
92 KOG3763 mRNA export factor TAP 23.1 35 0.00077 35.5 0.8 17 315-331 440-456 (585)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3e-35 Score=331.82 Aligned_cols=400 Identities=20% Similarity=0.307 Sum_probs=233.8
Q ss_pred cCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccc
Q 012173 4 QLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTL 83 (469)
Q Consensus 4 ~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l 83 (469)
.++.+|..+ ...+|+.|+|.++++..+|..++.+++|+.|+|++|..+..+|. +..+++|++|++++|..+..+|..+
T Consensus 600 ~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si 677 (1153)
T PLN03210 600 PLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSI 677 (1153)
T ss_pred CCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhh
Confidence 445555554 34566666666666655555555566666666665555555554 5555566666666665555555555
Q ss_pred cCCCCcCEEeccCc-CCCCCCccccCCcCCceeeccCCCCCCCcc------------------C----------------
Q 012173 84 GQVESLEELDISET-AVRRPPSSIFLMKNLRTLSLFGCNGPPSWH------------------L---------------- 128 (469)
Q Consensus 84 ~~l~~L~~L~L~~~-~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~------------------~---------------- 128 (469)
+++++|+.|++++| .+..+|..+ ++++|+.|++++|..+...+ +
T Consensus 678 ~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~ 756 (1153)
T PLN03210 678 QYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCE 756 (1153)
T ss_pred hccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccc
Confidence 55566666666554 344455433 45555555555543211000 0
Q ss_pred --------------------cccccccCCccc-cccccCCCCCCCCCCCEEEccCCCCCCCCCCCCC-------------
Q 012173 129 --------------------HLPFNLMGKSSC-LVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDI------------- 174 (469)
Q Consensus 129 --------------------~~~~~~~~~~~~-~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l------------- 174 (469)
...+..+....+ ....+|.+++.+++|+.|++++|... ..+|..+
T Consensus 757 ~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L-~~LP~~~~L~sL~~L~Ls~c 835 (1153)
T PLN03210 757 MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINL-ETLPTGINLESLESLDLSGC 835 (1153)
T ss_pred cchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCc-CeeCCCCCccccCEEECCCC
Confidence 000111112222 23445677777888888888777532 2344332
Q ss_pred -------CCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCcccCcCCCCC---CCccEEEecCCCCCcccccchhh
Q 012173 175 -------GNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQSLPQLP---PNIIFVKVNGCSSLVTLLGALKL 244 (469)
Q Consensus 175 -------~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp---~~L~~L~i~~C~~L~~l~~~~~~ 244 (469)
....+|+.|+|++|.++.+|.++..+++|+.|++++|++++.+|..+ ++|+.+++.+|.+|+.++.....
T Consensus 836 ~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~ 915 (1153)
T PLN03210 836 SRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSP 915 (1153)
T ss_pred CccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCc
Confidence 11245777777778888899999999999999999999999988654 56788899999999876542110
Q ss_pred h------cccccchh------hhhhHhhhccchHHHHHHHHHHhhccCCCCceEEEcCCCCCCCccccCCCCCeEE-EEc
Q 012173 245 C------KSNGIVIE------SIDSLKLLGNNGWAILMLREYLEAVSDPLKDFSTVVPESKIPKWFMYQNEGPSIT-VTR 311 (469)
Q Consensus 245 ~------~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~~~~g~si~-i~l 311 (469)
. .++..... ..+|.+ +.... .++. ......+++||.++|+||.||+.|++++ |++
T Consensus 916 ~~~~~~~~n~~~~~p~~~~l~f~nC~~-L~~~a--------~l~~---~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l 983 (1153)
T PLN03210 916 SEVAMATDNIHSKLPSTVCINFINCFN-LDQEA--------LLQQ---QSIFKQLILSGEEVPSYFTHRTTGASLTNIPL 983 (1153)
T ss_pred hhhhhhcccccccCCchhccccccccC-CCchh--------hhcc---cccceEEECCCccCchhccCCcccceeeeecc
Confidence 0 00000000 000000 11000 1111 1123467899999999999999999998 999
Q ss_pred CCCCcCCCceeeEEEEEEEeeeccccccc-ccCCCceeeEEEecCCCCceEEeccCcccCCCCeEEEEEeeccccc----
Q 012173 312 PSYLYNMNKIVGYAICCVFHVRRYSTRIK-KRRHSYELQCCMDGSDRGFFITFGGKFSHSGSDHLWLLFLSRRECY---- 386 (469)
Q Consensus 312 p~~~~~~~~~~gfa~c~v~~~~~~~~~~~-~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~sdh~~l~~~~~~~~~---- 386 (469)
|+.|+ ...+.||++|+|+ +...... ...+.+.+.|.+.+ ..+..+. ....+|+|+.|.....+.
T Consensus 984 ~~~~~-~~~~~~f~~c~v~---~~~~~~~~~~~~~~~~~c~~~~-~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~ 1052 (1153)
T PLN03210 984 LHISP-CQPFFRFRACAVV---DSESFFIISVSFDIQVCCRFID-RLGNHFD------SPYQPHVFSVTKKGSHLVIFDC 1052 (1153)
T ss_pred CCccc-CCCccceEEEEEE---ecCccccCCCceeEEEEEEEEC-CCCCccc------cCCCceeEeeeccccceEEecc
Confidence 99998 6789999999999 3333211 22345678888877 4443332 124456665555421110
Q ss_pred ------c--cccccccceEEEEEecccccccccCCCCCceEEEecceEEeecccccccc
Q 012173 387 ------D--RRWIFESNHFKLSFNDAREKYDLAGSGTGLKVKRCGFHPVYMHEVEELDQ 437 (469)
Q Consensus 387 ------~--~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vk~cGv~liy~~~~~~~~~ 437 (469)
+ ......++|+++.|... . ....++||+|||+++|+++..+...
T Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~f~~~----~---~~~~~~~~~cg~~~~~~~~~~~~~~ 1104 (1153)
T PLN03210 1053 CFPLNEDNAPLAELNYDHVDIQFRLT----N---KNSQLKLKGCGIRLSEDDSSLNNTL 1104 (1153)
T ss_pred cccccccccchhccCCceeeEEEEEe----c---CCCCeEEEeeeEEEeccCCCcccCC
Confidence 0 01122467877777621 1 1224799999999999776555433
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.80 E-value=2.6e-19 Score=201.49 Aligned_cols=198 Identities=28% Similarity=0.384 Sum_probs=99.5
Q ss_pred CCCCCcEEeeeccCCc-ccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEE
Q 012173 14 TMKDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEEL 92 (469)
Q Consensus 14 ~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L 92 (469)
.+++|++|+|++|.+. .+|..++.+++|++|+|++|.....+|..++++++|++|++++|...+.+|..++++++|++|
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 3556666666666554 455556666666666666655555556556666666666666655555556666666666666
Q ss_pred eccCcCCC-CCCccccCCcCCceeeccCCCCCCCcc--C--cccccccCCc-cccccccCCCCCCCCCCCEEEccCCCCC
Q 012173 93 DISETAVR-RPPSSIFLMKNLRTLSLFGCNGPPSWH--L--HLPFNLMGKS-SCLVALMLPSLSGLRSLTKLDLSDCGLG 166 (469)
Q Consensus 93 ~L~~~~i~-~lp~~l~~l~~L~~L~l~~~~~~~~~~--~--~~~~~~~~~~-~~~~~~~~~~l~~l~~L~~L~Ls~~~l~ 166 (469)
++++|.+. .+|..++.+++|++|++++|....... + ...+..+... +...+..|..+..+++|+.|++++|.+.
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 66666554 345555566666666665553211000 0 0001111111 1122333444445555555555555443
Q ss_pred CCCCCCCCCCCCCCcEEEcCCCCCc-ccCccccCCCCcCEEeccCCc
Q 012173 167 EGAIPSDIGNLHSLNELYLSKNNFV-TLPASINSLLNLKELEMEDCK 212 (469)
Q Consensus 167 ~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~ 212 (469)
+.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.
T Consensus 298 -~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 298 -GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343 (968)
T ss_pred -cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCC
Confidence 334444444555555555555444 334444444444444444443
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.80 E-value=1.4e-18 Score=196.86 Aligned_cols=117 Identities=24% Similarity=0.400 Sum_probs=101.9
Q ss_pred ccchhcCCC-CCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccC
Q 012173 7 KFPQIVTTM-KDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQ 85 (469)
Q Consensus 7 ~lp~~~~~l-~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~ 85 (469)
.+|+.+..+ ++|+.|.+.++.++.+|..+ .+.+|+.|+|.+|. +..+|..+..+++|+.|++++|..++.+|. ++.
T Consensus 579 ~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~ 655 (1153)
T PLN03210 579 HLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSM 655 (1153)
T ss_pred ecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCc-ccc
Confidence 466655555 46999999999999999987 57999999999976 888999999999999999999998998885 788
Q ss_pred CCCcCEEeccCc-CCCCCCccccCCcCCceeeccCCCCCCCc
Q 012173 86 VESLEELDISET-AVRRPPSSIFLMKNLRTLSLFGCNGPPSW 126 (469)
Q Consensus 86 l~~L~~L~L~~~-~i~~lp~~l~~l~~L~~L~l~~~~~~~~~ 126 (469)
+++|++|++++| .+..+|.+++++++|+.|++.+|..+...
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~L 697 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL 697 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCcc
Confidence 999999999997 56789999999999999999999765443
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.79 E-value=5.5e-19 Score=198.83 Aligned_cols=226 Identities=26% Similarity=0.332 Sum_probs=166.6
Q ss_pred ccchhc-CCCCCCcEEeeeccCCc-ccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccccccc
Q 012173 7 KFPQIV-TTMKDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLG 84 (469)
Q Consensus 7 ~lp~~~-~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~ 84 (469)
.+|..+ ..+++|++|+|++|++. .+| .+.+++|++|+|++|.....+|..++++++|++|++++|...+.+|..++
T Consensus 108 ~ip~~~~~~l~~L~~L~Ls~n~l~~~~p--~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 185 (968)
T PLN00113 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIP--RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185 (968)
T ss_pred cCChHHhccCCCCCEEECcCCccccccC--ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh
Confidence 444432 25566666666666554 233 24567777777777776667888899999999999999988889999999
Q ss_pred CCCCcCEEeccCcCCC-CCCccccCCcCCceeeccCCCCCCCcc--C--cccccccCCc-cccccccCCCCCCCCCCCEE
Q 012173 85 QVESLEELDISETAVR-RPPSSIFLMKNLRTLSLFGCNGPPSWH--L--HLPFNLMGKS-SCLVALMLPSLSGLRSLTKL 158 (469)
Q Consensus 85 ~l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~l~~~~~~~~~~--~--~~~~~~~~~~-~~~~~~~~~~l~~l~~L~~L 158 (469)
++++|++|++++|.+. .+|..++.+++|+.|++.+|....... + ...+..+... +...+.+|..++.+++|+.|
T Consensus 186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 265 (968)
T PLN00113 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL 265 (968)
T ss_pred hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEE
Confidence 9999999999999887 578899999999999999886432111 1 1112222222 23345667788888889999
Q ss_pred EccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCc-ccCccccCCCCcCEEeccCCcccCcCCCC---CCCccEEEecCCCC
Q 012173 159 DLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASINSLLNLKELEMEDCKRLQSLPQL---PPNIIFVKVNGCSS 234 (469)
Q Consensus 159 ~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~i~~C~~ 234 (469)
++++|.+. +.+|..+..+++|+.|+|++|.+. .+|..+..+++|+.|++++|.....+|.. .++|+.|++.+|.-
T Consensus 266 ~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 266 FLYQNKLS-GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344 (968)
T ss_pred ECcCCeee-ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC
Confidence 99888875 567888888889999999988887 57778888899999999888766555532 35777888777654
Q ss_pred C
Q 012173 235 L 235 (469)
Q Consensus 235 L 235 (469)
.
T Consensus 345 ~ 345 (968)
T PLN00113 345 S 345 (968)
T ss_pred c
Confidence 3
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=6.4e-20 Score=182.27 Aligned_cols=236 Identities=26% Similarity=0.387 Sum_probs=159.2
Q ss_pred CcCcccchhcCCCCCCcEEeeeccCCcccCccc-CCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCC------
Q 012173 3 LQLKKFPQIVTTMKDLSELNLDGTSITEVPSSI-ELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCK------ 75 (469)
Q Consensus 3 ~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i-~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~------ 75 (469)
|+|++.|..+...+++-+|+|++|+|..+|.++ -+|.-|-+|||++|+ ++.+|+.+..|..|++|.|++|..
T Consensus 113 NqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr 191 (1255)
T KOG0444|consen 113 NQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLR 191 (1255)
T ss_pred hhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHh
Confidence 556666666656666666666666666666543 456666666666644 666666666666666666666532
Q ss_pred -------------------CccccccccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCcc---Cccccc
Q 012173 76 -------------------LENVPDTLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWH---LHLPFN 133 (469)
Q Consensus 76 -------------------l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~ 133 (469)
+..+|..+..|.||..+|++.|.+..+|..+.++.+|+.|+|++|....... .-..++
T Consensus 192 QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lE 271 (1255)
T KOG0444|consen 192 QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLE 271 (1255)
T ss_pred cCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhh
Confidence 2346777777888888888888888888888888888888888886322110 001122
Q ss_pred ccCCccccccccCCCCCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCcc
Q 012173 134 LMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKR 213 (469)
Q Consensus 134 ~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~ 213 (469)
.+..+.+....+|+.+.+++.|+.|.+.+|.+.-+.+|+.++.+.+|+.+..++|++.-.|+.+..|.+|+.|.|++++
T Consensus 272 tLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr- 350 (1255)
T KOG0444|consen 272 TLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR- 350 (1255)
T ss_pred hhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-
Confidence 2344444555667777778888888888777766667888888888888888888887778888888888888877653
Q ss_pred cCcCCC---CCCCccEEEecCCCCCccccc
Q 012173 214 LQSLPQ---LPPNIIFVKVNGCSSLVTLLG 240 (469)
Q Consensus 214 L~~lp~---lp~~L~~L~i~~C~~L~~l~~ 240 (469)
|..+|+ +.+.|+.|++++-++|..-|-
T Consensus 351 LiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 351 LITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred eeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 445554 356777777777777766554
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=1.8e-19 Score=152.56 Aligned_cols=160 Identities=31% Similarity=0.559 Sum_probs=118.2
Q ss_pred cCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccc
Q 012173 4 QLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTL 83 (469)
Q Consensus 4 ~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l 83 (469)
+++++|..+ ++.+++.|.|++|+++.+|+.|..+.+|+.|++.+|+ ++.+|.+|..+++|+.|+++- +.+..+|.++
T Consensus 22 sf~~~~gLf-~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgm-nrl~~lprgf 98 (264)
T KOG0617|consen 22 SFEELPGLF-NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGM-NRLNILPRGF 98 (264)
T ss_pred cHhhccccc-chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecch-hhhhcCcccc
Confidence 345566555 5788899999999999999999999999999999876 889999999999999999986 5778889999
Q ss_pred cCCCCcCEEeccCcCCC--CCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEcc
Q 012173 84 GQVESLEELDISETAVR--RPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLS 161 (469)
Q Consensus 84 ~~l~~L~~L~L~~~~i~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls 161 (469)
|.++.|+.||+.+|.+. .+|..+..++.|+.|++++|.
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd---------------------------------------- 138 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND---------------------------------------- 138 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC----------------------------------------
Confidence 99999999999988776 467777677777777766554
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCC
Q 012173 162 DCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC 211 (469)
Q Consensus 162 ~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c 211 (469)
+ +.+|..++.+++|+.|.+..|++.++|..++.+.+|+.|++.++
T Consensus 139 ---f--e~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 139 ---F--EILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred ---c--ccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence 2 22455555555555555555555555555555555555555554
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.66 E-value=2.6e-18 Score=170.94 Aligned_cols=215 Identities=22% Similarity=0.302 Sum_probs=164.8
Q ss_pred CCcCcccchh-cCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCC-------------------------Cccc
Q 012173 2 RLQLKKFPQI-VTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKN-------------------------LARV 55 (469)
Q Consensus 2 ~~~L~~lp~~-~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~-------------------------l~~l 55 (469)
.|+|+.+|.. +-++..|-+|+|++|++..+|+.+.+|.+|+.|+|++|.. +..+
T Consensus 135 ~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~ 214 (1255)
T KOG0444|consen 135 YNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNI 214 (1255)
T ss_pred cCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcC
Confidence 3677777763 4467777778888888887877777777777777776542 1246
Q ss_pred CccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCc-cC---ccc
Q 012173 56 PSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSW-HL---HLP 131 (469)
Q Consensus 56 p~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~-~~---~~~ 131 (469)
|.++-.|.+|+.+++|. +.+..+|+.+.++.+|+.|+|++|.|+++...++...+|++|+++.|...... .. ...
T Consensus 215 Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL 293 (1255)
T KOG0444|consen 215 PTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKL 293 (1255)
T ss_pred CCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHH
Confidence 67777788888889986 57888898888899999999999988888777888888888888877532110 00 000
Q ss_pred ccccCCcc-ccccccCCCCCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccC
Q 012173 132 FNLMGKSS-CLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMED 210 (469)
Q Consensus 132 ~~~~~~~~-~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~ 210 (469)
-.+...++ .....+|+.++++..|+++..++|.+ .-+|..++.+..|+.|.|+.|.+.++|..|.-++.|+.|++..
T Consensus 294 ~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L--ElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlre 371 (1255)
T KOG0444|consen 294 TKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL--ELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRE 371 (1255)
T ss_pred HHHHhccCcccccCCccchhhhhhhHHHHhhcccc--ccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccC
Confidence 11111111 12345688999999999999999998 5699999999999999999999999999999999999999999
Q ss_pred CcccCcCCC
Q 012173 211 CKRLQSLPQ 219 (469)
Q Consensus 211 c~~L~~lp~ 219 (469)
+++|..-|.
T Consensus 372 NpnLVMPPK 380 (1255)
T KOG0444|consen 372 NPNLVMPPK 380 (1255)
T ss_pred CcCccCCCC
Confidence 999876554
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.65 E-value=1.2e-17 Score=165.21 Aligned_cols=119 Identities=26% Similarity=0.323 Sum_probs=71.6
Q ss_pred CCcCcccch-hcCCCCCCcEEeeeccCCccc-CcccCCCCCCCEEeccCCCCCcccC-ccCCCCCCCCEEEeeCCCCCcc
Q 012173 2 RLQLKKFPQ-IVTTMKDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNLARVP-SSINGLKSPKTLNLSGCCKLEN 78 (469)
Q Consensus 2 ~~~L~~lp~-~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~L~sL~~L~Ls~c~~l~~ 78 (469)
||++..+|. .+.++++|+.|+|..|.|..+ .-.|..|+.|+.|.|..|. +..+. ..+..|.++++|+|..|+....
T Consensus 206 rNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 206 RNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND-ISKLDDGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred cCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcC-cccccCcceeeecccceeecccchhhhh
Confidence 456666665 344566666666666666544 3446666666666666655 33332 3355666677777766544433
Q ss_pred ccccccCCCCcCEEeccCcCCCCC-CccccCCcCCceeeccCCC
Q 012173 79 VPDTLGQVESLEELDISETAVRRP-PSSIFLMKNLRTLSLFGCN 121 (469)
Q Consensus 79 lp~~l~~l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~l~~~~ 121 (469)
-..++.+|+.|+.|++++|+|..+ +.+....++|+.|+|+.|.
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~ 328 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR 328 (873)
T ss_pred hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc
Confidence 344566677777777777776655 4455556677777776665
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.65 E-value=1.3e-18 Score=165.24 Aligned_cols=204 Identities=25% Similarity=0.349 Sum_probs=124.9
Q ss_pred CcCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccccc
Q 012173 3 LQLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDT 82 (469)
Q Consensus 3 ~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~ 82 (469)
|++.++|+.++.+.+|+.|+.+.+.+.++|++++.+..|+.|+..+|. +..+|..++++.+|..|++.++ ++..+|+.
T Consensus 101 n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~ 178 (565)
T KOG0472|consen 101 NKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGN-KLKALPEN 178 (565)
T ss_pred chHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhcccc-chhhCCHH
Confidence 566677777777777777777777777777777777777777777654 6677777777777777777773 55666666
Q ss_pred ccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCC--ccCcccccccCCccccccccCCCC-CCCCCCCEEE
Q 012173 83 LGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPS--WHLHLPFNLMGKSSCLVALMLPSL-SGLRSLTKLD 159 (469)
Q Consensus 83 l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~ 159 (469)
.-+|+.|++||...|.++.+|..++.+.+|..|++..|+.... .+-...+.-+..+.+.+..+|... .++++|..||
T Consensus 179 ~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 179 HIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLD 258 (565)
T ss_pred HHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeee
Confidence 5558888888888888888888888888888888887763211 000111111112222233333222 2455555555
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCC
Q 012173 160 LSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC 211 (469)
Q Consensus 160 Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c 211 (469)
+.+|.+. .+|+.+..+++|+.||+++|.++.+|.+++++ .|+.|-+.++
T Consensus 259 LRdNklk--e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 259 LRDNKLK--EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred ccccccc--cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCC
Confidence 5555552 25555555555555555555555555555555 5555555554
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.61 E-value=2.6e-18 Score=163.15 Aligned_cols=224 Identities=25% Similarity=0.390 Sum_probs=178.6
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPD 81 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~ 81 (469)
.|.++.+-+.+.++..|.+|++.++++.++|++++.+..++.|+.+.++ +..+|..++.+.+|+.|+++. +.+..+|+
T Consensus 54 ~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~s~-n~~~el~~ 131 (565)
T KOG0472|consen 54 HNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLDCSS-NELKELPD 131 (565)
T ss_pred cCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhhccc-cceeecCc
Confidence 3566777777778899999999999999999999999999999999966 888999999999999999998 46778888
Q ss_pred cccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCccCcc---cccccCCccccccccCCCCCCCCCCCEE
Q 012173 82 TLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHL---PFNLMGKSSCLVALMLPSLSGLRSLTKL 158 (469)
Q Consensus 82 ~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~l~~L~~L 158 (469)
.++.+..|+.|+..+|.+..+|..++++.+|..|++.+++......... .+..+....+..+.+|+.++++.+|..|
T Consensus 132 ~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~L 211 (565)
T KOG0472|consen 132 SIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELL 211 (565)
T ss_pred hHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHH
Confidence 9999999999999999999999999999999999998887433222111 1222344556778889999999999999
Q ss_pred EccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCcccc-CCCCcCEEeccCCcccCcCCC---CCCCccEEEecC
Q 012173 159 DLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASIN-SLLNLKELEMEDCKRLQSLPQ---LPPNIIFVKVNG 231 (469)
Q Consensus 159 ~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~-~l~~L~~L~L~~c~~L~~lp~---lp~~L~~L~i~~ 231 (469)
++..|.+. .+| .|.+++.|++|+++.|.+..+|+... .+++|..||++++ +++++|. +..+|.+|++++
T Consensus 212 yL~~Nki~--~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSN 284 (565)
T KOG0472|consen 212 YLRRNKIR--FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSN 284 (565)
T ss_pred Hhhhcccc--cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccC
Confidence 99999884 366 67778888888888888888887664 7788888888874 4666663 246677777765
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.58 E-value=7.9e-15 Score=156.88 Aligned_cols=215 Identities=21% Similarity=0.384 Sum_probs=146.7
Q ss_pred CcCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccccc
Q 012173 3 LQLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDT 82 (469)
Q Consensus 3 ~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~ 82 (469)
++++.+|..+. ++|+.|+|++|+|+.+|..+. .+|++|++++|. +..+|..+. .+|+.|++++|. +..+|..
T Consensus 188 ~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~ 259 (754)
T PRK15370 188 LGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSINR-ITELPER 259 (754)
T ss_pred CCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCCc-cCcCChh
Confidence 56788888664 689999999999999987664 589999999876 778887653 579999999975 5678876
Q ss_pred ccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCcc--CcccccccCCccccccccCCCCCCCCCCCEEEc
Q 012173 83 LGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWH--LHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDL 160 (469)
Q Consensus 83 l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L 160 (469)
+. .+|+.|++++|.+..+|..+. ++|+.|++++|... ... +...+..+....+....+|..+ .++|+.|++
T Consensus 260 l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~L 332 (754)
T PRK15370 260 LP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIR-TLPAHLPSGITHLNVQSNSLTALPETL--PPGLKTLEA 332 (754)
T ss_pred Hh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccc-cCcccchhhHHHHHhcCCccccCCccc--cccceeccc
Confidence 64 589999999999998887664 58999999988522 111 1111112222222222233322 257777788
Q ss_pred cCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCcccCcCC-CCCCCccEEEecCCCCCcccc
Q 012173 161 SDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQSLP-QLPPNIIFVKVNGCSSLVTLL 239 (469)
Q Consensus 161 s~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp-~lp~~L~~L~i~~C~~L~~l~ 239 (469)
++|.+.. +|..+. ++|+.|+|++|+++.+|..+. ++|+.|+|++|. +..+| .++.+|+.|++.++ +|+.++
T Consensus 333 s~N~Lt~--LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~-Lt~LP~~l~~sL~~LdLs~N-~L~~LP 404 (754)
T PRK15370 333 GENALTS--LPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNA-LTNLPENLPAALQIMQASRN-NLVRLP 404 (754)
T ss_pred cCCcccc--CChhhc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCCc-CCCCCHhHHHHHHHHhhccC-CcccCc
Confidence 8777743 665443 578888888888777776553 577888888764 44555 34456777777764 455555
Q ss_pred c
Q 012173 240 G 240 (469)
Q Consensus 240 ~ 240 (469)
.
T Consensus 405 ~ 405 (754)
T PRK15370 405 E 405 (754)
T ss_pred h
Confidence 4
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.56 E-value=5.3e-14 Score=149.90 Aligned_cols=210 Identities=23% Similarity=0.262 Sum_probs=143.7
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPD 81 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~ 81 (469)
.+.|+++|+.+. ++|+.|++.+|+|+.+|.. +++|++|+|++|. +..+|.. .++|+.|++++| .+..+|.
T Consensus 210 ~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~N-~L~~Lp~ 279 (788)
T PRK15387 210 ESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFSN-PLTHLPA 279 (788)
T ss_pred CCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---ccccceeeccCC-chhhhhh
Confidence 357888998775 5899999999999998863 6899999999975 7788863 468899999986 4666765
Q ss_pred cccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEcc
Q 012173 82 TLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLS 161 (469)
Q Consensus 82 ~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls 161 (469)
. ..+|+.|++++|.++.+|.. +++|+.|++++|...........+..+....+....+|. ...+|+.|+|+
T Consensus 280 l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~---lp~~Lq~LdLS 350 (788)
T PRK15387 280 L---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPT---LPSGLQELSVS 350 (788)
T ss_pred c---hhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCCcccccccccccCccccccc---cccccceEecC
Confidence 3 46788899999999888863 578899999887532211111112222222333333332 12478889999
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCcccCcCCCCCCCccEEEecCCCCCccccc
Q 012173 162 DCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQSLPQLPPNIIFVKVNGCSSLVTLLG 240 (469)
Q Consensus 162 ~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L~i~~C~~L~~l~~ 240 (469)
+|++.. +|.. .++|+.|++++|.+..+|.. ..+|+.|++++| .+..+|..+++|+.|+++++. |+.++.
T Consensus 351 ~N~Ls~--LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N-~Lt~LP~l~s~L~~LdLS~N~-LssIP~ 419 (788)
T PRK15387 351 DNQLAS--LPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGN-RLTSLPVLPSELKELMVSGNR-LTSLPM 419 (788)
T ss_pred CCccCC--CCCC---CcccceehhhccccccCccc---ccccceEEecCC-cccCCCCcccCCCEEEccCCc-CCCCCc
Confidence 888853 6653 24677777888877777753 246777888776 456677777777777777753 555543
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=1.1e-16 Score=135.64 Aligned_cols=152 Identities=28% Similarity=0.444 Sum_probs=134.3
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCc-ccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLE-NVP 80 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~-~lp 80 (469)
.|+|..+|..+..+.+|+.|++.+|+|.++|.+++.+++|+.|++.-|+ +..+|..++.++-|+.||+..++.-+ .+|
T Consensus 42 HNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldltynnl~e~~lp 120 (264)
T KOG0617|consen 42 HNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDLTYNNLNENSLP 120 (264)
T ss_pred cCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhccccccccccCC
Confidence 4788899999999999999999999999999999999999999999765 88999999999999999999876544 689
Q ss_pred ccccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEc
Q 012173 81 DTLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDL 160 (469)
Q Consensus 81 ~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L 160 (469)
..+..|+.|+.|+++.|.++-+|..++++++|+.|.+.+|.
T Consensus 121 gnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd--------------------------------------- 161 (264)
T KOG0617|consen 121 GNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND--------------------------------------- 161 (264)
T ss_pred cchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc---------------------------------------
Confidence 88989999999999999999999999999888888876654
Q ss_pred cCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccccC
Q 012173 161 SDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINS 199 (469)
Q Consensus 161 s~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~ 199 (469)
+ -.+|..++.+..|++|++.||.++-+|+.+++
T Consensus 162 ----l--l~lpkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 162 ----L--LSLPKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred ----h--hhCcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 2 23788888899999999999999999876654
No 14
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.50 E-value=3.7e-15 Score=147.81 Aligned_cols=208 Identities=25% Similarity=0.268 Sum_probs=117.5
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCccc-CcccCCCCCCCEEeccCCCCCcccCc-cCCCCCCCCEEEeeCCCCCccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNLARVPS-SINGLKSPKTLNLSGCCKLENV 79 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~-~i~~L~sL~~L~Ls~c~~l~~l 79 (469)
+|.|+.+|.+.+...||+.|+|.+|.|+.+ ...++.++.|+.|||+.|. +..+|. ++..-.++++|+|++|.....-
T Consensus 111 ~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~ 189 (873)
T KOG4194|consen 111 KNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLE 189 (873)
T ss_pred cchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeeccccccccc
Confidence 455666666665555666666666666554 2345556666666666644 444432 2333456777777775432222
Q ss_pred cccccCCCCcCEEeccCcCCCCCCccccC-CcCCceeeccCCCCCCCc-----cCc-----------------------c
Q 012173 80 PDTLGQVESLEELDISETAVRRPPSSIFL-MKNLRTLSLFGCNGPPSW-----HLH-----------------------L 130 (469)
Q Consensus 80 p~~l~~l~~L~~L~L~~~~i~~lp~~l~~-l~~L~~L~l~~~~~~~~~-----~~~-----------------------~ 130 (469)
-..+..+.+|..|.|++|.++.+|..... |++|+.|+|..|..-... ++. .
T Consensus 190 ~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~ 269 (873)
T KOG4194|consen 190 TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLE 269 (873)
T ss_pred cccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeec
Confidence 23355666777777777777777655443 777777777666421110 000 0
Q ss_pred cccccCC-ccccccccCCCCCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCc-cccCCCCcCEEec
Q 012173 131 PFNLMGK-SSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEM 208 (469)
Q Consensus 131 ~~~~~~~-~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L 208 (469)
.++.+.. .+.....--.++-++++|+.|++|+|.+. ..-++.....++|++|+|+.|+++++++ .+..++.|+.|.|
T Consensus 270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred ccceeecccchhhhhhcccccccchhhhhccchhhhh-eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence 0000000 11122222345667777888888888774 3345556667788888888888887765 3445556666666
Q ss_pred cCC
Q 012173 209 EDC 211 (469)
Q Consensus 209 ~~c 211 (469)
+++
T Consensus 349 s~N 351 (873)
T KOG4194|consen 349 SHN 351 (873)
T ss_pred ccc
Confidence 554
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.50 E-value=1.7e-13 Score=146.12 Aligned_cols=210 Identities=25% Similarity=0.302 Sum_probs=141.5
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPD 81 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~ 81 (469)
+|+|+++|.. +++|++|+|++|+|+.+|.. .++|+.|++++|. +..+|.. ..+|+.|++++| .+..+|.
T Consensus 231 ~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~ 299 (788)
T PRK15387 231 DNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGN-QLTSLPV 299 (788)
T ss_pred CCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCc-hhhhhhc---hhhcCEEECcCC-ccccccc
Confidence 5788999974 58999999999999998863 4688889998876 6677753 356778888875 5566665
Q ss_pred cccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEcc
Q 012173 82 TLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLS 161 (469)
Q Consensus 82 ~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls 161 (469)
. +++|+.|++++|.+..+|.. ..+|+.|++.+|....-..+...+..+..+.+....+|.. .++|+.|+++
T Consensus 300 ~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls 370 (788)
T PRK15387 300 L---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL---PSELYKLWAY 370 (788)
T ss_pred c---ccccceeECCCCccccCCCC---cccccccccccCccccccccccccceEecCCCccCCCCCC---Ccccceehhh
Confidence 3 46788888888888777652 2345566666554211001111122233333333333432 3578888888
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCcccCcCCCCCCCccEEEecCCCCCcccccc
Q 012173 162 DCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQSLPQLPPNIIFVKVNGCSSLVTLLGA 241 (469)
Q Consensus 162 ~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L~i~~C~~L~~l~~~ 241 (469)
+|.+. .+|.. ..+|+.|+|++|.++.+|.. .++|+.|++++|+ +..+|.+|.+|+.|++.++ .++++|..
T Consensus 371 ~N~L~--~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~-LssIP~l~~~L~~L~Ls~N-qLt~LP~s 440 (788)
T PRK15387 371 NNRLT--SLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNR-LTSLPMLPSGLLSLSVYRN-QLTRLPES 440 (788)
T ss_pred ccccc--cCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCc-CCCCCcchhhhhhhhhccC-cccccChH
Confidence 88885 36653 35788999999999888854 3578889999875 6778888888888888764 36666654
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.47 E-value=1.4e-13 Score=147.32 Aligned_cols=197 Identities=18% Similarity=0.340 Sum_probs=146.9
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPD 81 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~ 81 (469)
+|+|+.+|..+. ++|++|++++|+++.+|..+. .+|+.|+|++|. +..+|..+. .+|+.|++++| .+..+|.
T Consensus 208 ~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~ 279 (754)
T PRK15370 208 NNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR-ITELPERLP--SALQSLDLFHN-KISCLPE 279 (754)
T ss_pred CCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc-cCcCChhHh--CCCCEEECcCC-ccCcccc
Confidence 478899998764 699999999999999987654 579999999987 668887664 58999999965 6778887
Q ss_pred cccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCC-ccCcccccccCCccccccccCCCCCCCCCCCEEEc
Q 012173 82 TLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPS-WHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDL 160 (469)
Q Consensus 82 ~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L 160 (469)
.+. .+|+.|++++|.++.+|..+. ++|+.|++++|..... ......+..+....+....+|..+. ++|+.|++
T Consensus 280 ~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~L 353 (754)
T PRK15370 280 NLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLP--PELQVLDV 353 (754)
T ss_pred ccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCccccccceeccccCCccccCChhhc--CcccEEEC
Confidence 664 589999999999998886543 5788888888753211 0111223333333343444555443 69999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCcccCcCCC
Q 012173 161 SDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQSLPQ 219 (469)
Q Consensus 161 s~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 219 (469)
++|++. .+|..+ .++|+.|+|++|+++.+|..+. ..|+.|++++|. +..+|.
T Consensus 354 s~N~L~--~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~-L~~LP~ 405 (754)
T PRK15370 354 SKNQIT--VLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNN-LVRLPE 405 (754)
T ss_pred CCCCCC--cCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCC-cccCch
Confidence 999985 377655 3689999999999999998764 379999999974 556664
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.42 E-value=2.8e-15 Score=155.87 Aligned_cols=191 Identities=26% Similarity=0.340 Sum_probs=127.0
Q ss_pred CCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEec
Q 012173 15 MKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDI 94 (469)
Q Consensus 15 l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 94 (469)
-.+|++++++.+++..+|.+++.+.+|+.|+..+|. +..+|..+....+|+.|.+..| .++.+|..++.++.|++|+|
T Consensus 240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred cccceeeecchhhhhcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeee
Confidence 367888888888888888888888888888888866 5788888888888888888874 67788888888888888888
Q ss_pred cCcCCCCCCccccCC--cCCceeeccCCCCCCCcc-----CcccccccCCccccccccCCCCCCCCCCCEEEccCCCCCC
Q 012173 95 SETAVRRPPSSIFLM--KNLRTLSLFGCNGPPSWH-----LHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGE 167 (469)
Q Consensus 95 ~~~~i~~lp~~l~~l--~~L~~L~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~ 167 (469)
..|.+..+|..+..- .+|+.|+.+.+....... ......+..-.+.++....+.+.+..+|+.|+|++|++.
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~- 396 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN- 396 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-
Confidence 888888877633221 123333333332111000 000001111223344455666778888888888888883
Q ss_pred CCCCCC-CCCCCCCcEEEcCCCCCcccCccccCCCCcCEEecc
Q 012173 168 GAIPSD-IGNLHSLNELYLSKNNFVTLPASINSLLNLKELEME 209 (469)
Q Consensus 168 ~~~p~~-l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~ 209 (469)
.+|+. +.+++.|++|+|+||.++.+|..+..+..|+.|...
T Consensus 397 -~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 397 -SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAH 438 (1081)
T ss_pred -cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhc
Confidence 46664 567788888888888887777655544444444433
No 18
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.31 E-value=9.5e-14 Score=137.71 Aligned_cols=185 Identities=26% Similarity=0.421 Sum_probs=154.0
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPD 81 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~ 81 (469)
+|++.++|..+..+..|+.+.|..|.+..+|..+.++..|.+|||+.|. +..+|..++.|+ |+.|.+++ ++++.+|+
T Consensus 84 rNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~ 160 (722)
T KOG0532|consen 84 RNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSN-NKLTSLPE 160 (722)
T ss_pred ccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEec-CccccCCc
Confidence 5778888887777888888899988898899999999999999999876 788898888776 89999987 68889999
Q ss_pred cccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEcc
Q 012173 82 TLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLS 161 (469)
Q Consensus 82 ~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls 161 (469)
.++.+..|..||.+.|.+..+|+.++.+.+|+.|++..|... .+|+.+..+ .|..||++
T Consensus 161 ~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~--------------------~lp~El~~L-pLi~lDfS 219 (722)
T KOG0532|consen 161 EIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE--------------------DLPEELCSL-PLIRLDFS 219 (722)
T ss_pred ccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh--------------------hCCHHHhCC-ceeeeecc
Confidence 999889999999999999999999999999999988877622 235556633 48899999
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccc---cCCCCcCEEeccCCc
Q 012173 162 DCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASI---NSLLNLKELEMEDCK 212 (469)
Q Consensus 162 ~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i---~~l~~L~~L~L~~c~ 212 (469)
.|+++. +|..+..++.|++|-|.+|.+.+-|..| +...-.++|+..-|.
T Consensus 220 cNkis~--iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 220 CNKISY--LPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred cCceee--cchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 999854 8999999999999999999998888766 345567888888884
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.30 E-value=2.1e-13 Score=133.89 Aligned_cols=212 Identities=18% Similarity=0.224 Sum_probs=146.5
Q ss_pred ccchhcCCCCCCcEEeeeccCCc-----ccCcccCCCCCCCEEeccCCCCC------cccCccCCCCCCCCEEEeeCCCC
Q 012173 7 KFPQIVTTMKDLSELNLDGTSIT-----EVPSSIELLPGLELLNLNDCKNL------ARVPSSINGLKSPKTLNLSGCCK 75 (469)
Q Consensus 7 ~lp~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~L~~c~~l------~~lp~~i~~L~sL~~L~Ls~c~~ 75 (469)
..+..+..+.+|++|+++++.++ .++..+...++|++|+++++... ..++..+..+++|+.|++++|..
T Consensus 14 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 14 RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 34455566778999999999884 46667788889999999887543 22444566788999999999877
Q ss_pred CccccccccCCCC---cCEEeccCcCCCC-----CCccccCC-cCCceeeccCCCCCCCccCcccccccCCccccccccC
Q 012173 76 LENVPDTLGQVES---LEELDISETAVRR-----PPSSIFLM-KNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALML 146 (469)
Q Consensus 76 l~~lp~~l~~l~~---L~~L~L~~~~i~~-----lp~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (469)
....+..+..+.+ |++|++++|.+.. +...+..+ ++|+.|++.+|..... ....+.
T Consensus 94 ~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~---------------~~~~~~ 158 (319)
T cd00116 94 GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA---------------SCEALA 158 (319)
T ss_pred ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch---------------HHHHHH
Confidence 6555555554544 9999999998762 23445566 8999999998873211 011123
Q ss_pred CCCCCCCCCCEEEccCCCCCCCCC---CCCCCCCCCCcEEEcCCCCCc-----ccCccccCCCCcCEEeccCCcccC---
Q 012173 147 PSLSGLRSLTKLDLSDCGLGEGAI---PSDIGNLHSLNELYLSKNNFV-----TLPASINSLLNLKELEMEDCKRLQ--- 215 (469)
Q Consensus 147 ~~l~~l~~L~~L~Ls~~~l~~~~~---p~~l~~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~c~~L~--- 215 (469)
..+..+++|++|++++|.+.+..+ +..+..+++|+.|++++|.+. .++..+..+++|++|++++|+.-.
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence 345567789999999998864322 233455678999999999876 344566778899999999985321
Q ss_pred -c----CCCCCCCccEEEecCCC
Q 012173 216 -S----LPQLPPNIIFVKVNGCS 233 (469)
Q Consensus 216 -~----lp~lp~~L~~L~i~~C~ 233 (469)
. ++.-.+.|+.|++.+|.
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCC
Confidence 1 11113688888888873
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.29 E-value=3.6e-13 Score=132.13 Aligned_cols=211 Identities=19% Similarity=0.208 Sum_probs=145.5
Q ss_pred cccchhcCCCCCCcEEeeeccCCcc-------cCcccCCCCCCCEEeccCCCCCcccCccCCCCCC---CCEEEeeCCCC
Q 012173 6 KKFPQIVTTMKDLSELNLDGTSITE-------VPSSIELLPGLELLNLNDCKNLARVPSSINGLKS---PKTLNLSGCCK 75 (469)
Q Consensus 6 ~~lp~~~~~l~~L~~L~L~~~~l~~-------lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~s---L~~L~Ls~c~~ 75 (469)
..++..+...++|++|+++++.+.. ++..++.+++|+.|++++|......+..+..+.+ |++|++++|..
T Consensus 41 ~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~ 120 (319)
T cd00116 41 KALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL 120 (319)
T ss_pred HHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCcc
Confidence 3466677778889999999986652 3456778999999999998865444444444444 99999999865
Q ss_pred Cc----cccccccCC-CCcCEEeccCcCCC-----CCCccccCCcCCceeeccCCCCCCCccCcccccccCCcccccccc
Q 012173 76 LE----NVPDTLGQV-ESLEELDISETAVR-----RPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALM 145 (469)
Q Consensus 76 l~----~lp~~l~~l-~~L~~L~L~~~~i~-----~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (469)
.. .+...+..+ ++|++|++++|.+. .++..+..+++|++|++++|..... ....+
T Consensus 121 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---------------~~~~l 185 (319)
T cd00116 121 GDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA---------------GIRAL 185 (319)
T ss_pred chHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH---------------HHHHH
Confidence 42 233455667 89999999999887 3344566778999999998762110 01112
Q ss_pred CCCCCCCCCCCEEEccCCCCCCC---CCCCCCCCCCCCcEEEcCCCCCcc--cCcccc----CCCCcCEEeccCCccc--
Q 012173 146 LPSLSGLRSLTKLDLSDCGLGEG---AIPSDIGNLHSLNELYLSKNNFVT--LPASIN----SLLNLKELEMEDCKRL-- 214 (469)
Q Consensus 146 ~~~l~~l~~L~~L~Ls~~~l~~~---~~p~~l~~l~~L~~L~L~~n~l~~--lp~~i~----~l~~L~~L~L~~c~~L-- 214 (469)
+..+..+++|+.|++++|.+.+. .+...+..+++|+.|++++|.++. +..... ..+.|++|++++|..-
T Consensus 186 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~ 265 (319)
T cd00116 186 AEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDD 265 (319)
T ss_pred HHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcH
Confidence 33445568999999999987532 133456678999999999998873 111111 2479999999998532
Q ss_pred ------CcCCCCCCCccEEEecCC
Q 012173 215 ------QSLPQLPPNIIFVKVNGC 232 (469)
Q Consensus 215 ------~~lp~lp~~L~~L~i~~C 232 (469)
+.++.. ++|+.++++++
T Consensus 266 ~~~~l~~~~~~~-~~L~~l~l~~N 288 (319)
T cd00116 266 GAKDLAEVLAEK-ESLLELDLRGN 288 (319)
T ss_pred HHHHHHHHHhcC-CCccEEECCCC
Confidence 122333 56777777653
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.29 E-value=8.4e-14 Score=132.55 Aligned_cols=210 Identities=22% Similarity=0.268 Sum_probs=113.9
Q ss_pred CcCcccch-hcCCCCCCcEEeeeccCCccc-CcccCCCCCCCEEeccCCCCCcccCcc-CCCCCCCCEEEeeCCCCCccc
Q 012173 3 LQLKKFPQ-IVTTMKDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNLARVPSS-INGLKSPKTLNLSGCCKLENV 79 (469)
Q Consensus 3 ~~L~~lp~-~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~-i~~L~sL~~L~Ls~c~~l~~l 79 (469)
|+|+.+|+ .++.+++||.|+|+.|+|+.| |+.|..++.|..|-+-++..+..+|.. +++|.+|+.|.+.-|...-..
T Consensus 77 N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir 156 (498)
T KOG4237|consen 77 NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIR 156 (498)
T ss_pred CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchh
Confidence 34444443 344444444444444444443 444444444444444443334444432 334444444444433222222
Q ss_pred cccccCCCCcCEEeccCcCCCCCCc-cccCCcCCceeeccCCCCCCCccC-------------------cccccc-----
Q 012173 80 PDTLGQVESLEELDISETAVRRPPS-SIFLMKNLRTLSLFGCNGPPSWHL-------------------HLPFNL----- 134 (469)
Q Consensus 80 p~~l~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~-------------------~~~~~~----- 134 (469)
.+.+..|++|..|.+.+|.+..++. ++..+.+++.+.+..+...-.-.+ .....+
T Consensus 157 ~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri 236 (498)
T KOG4237|consen 157 QDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRI 236 (498)
T ss_pred HHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHh
Confidence 2345556666666666666666655 555666666666554431110000 000000
Q ss_pred -------c----------CCcccccc-ccC-CCCCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCc
Q 012173 135 -------M----------GKSSCLVA-LML-PSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA 195 (469)
Q Consensus 135 -------~----------~~~~~~~~-~~~-~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~ 195 (469)
+ ....+... ..| ..+.++++|++|+|++|.++ +.-+.+|..+..+++|.|.+|++..+..
T Consensus 237 ~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~N~l~~v~~ 315 (498)
T KOG4237|consen 237 NQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYLTRNKLEFVSS 315 (498)
T ss_pred cccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhcCcchHHHHHH
Confidence 0 00011111 011 13678899999999999986 5566788899999999999999987665
Q ss_pred -cccCCCCcCEEeccCCcc
Q 012173 196 -SINSLLNLKELEMEDCKR 213 (469)
Q Consensus 196 -~i~~l~~L~~L~L~~c~~ 213 (469)
-+.+++.|+.|+|.+++-
T Consensus 316 ~~f~~ls~L~tL~L~~N~i 334 (498)
T KOG4237|consen 316 GMFQGLSGLKTLSLYDNQI 334 (498)
T ss_pred HhhhccccceeeeecCCee
Confidence 457899999999999753
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.21 E-value=3.4e-13 Score=140.61 Aligned_cols=207 Identities=26% Similarity=0.428 Sum_probs=148.3
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPD 81 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~ 81 (469)
.++++.+|++++.+.+|+.|+...|.++.+|..+....+|+.|.+..|. ++.+|....++++|++|+|..+ .+..+|+
T Consensus 250 ~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N-~L~~lp~ 327 (1081)
T KOG0618|consen 250 HNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSN-NLPSLPD 327 (1081)
T ss_pred hhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhc-cccccch
Confidence 3678899999999999999999999999999999999999999999977 8888988888999999999884 4555543
Q ss_pred cc--------------------------cCCCCcCEEeccCcCCCC-CCccccCCcCCceeeccCCCCCCCccCcccccc
Q 012173 82 TL--------------------------GQVESLEELDISETAVRR-PPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNL 134 (469)
Q Consensus 82 ~l--------------------------~~l~~L~~L~L~~~~i~~-lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 134 (469)
.+ ..+..|+.|++.+|.+++ .-.-+.+..+|+.|+|++|...
T Consensus 328 ~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~----------- 396 (1081)
T KOG0618|consen 328 NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN----------- 396 (1081)
T ss_pred HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-----------
Confidence 21 123445666677776662 2234567788888888877511
Q ss_pred cCCccccccccC-CCCCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCcc
Q 012173 135 MGKSSCLVALML-PSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKR 213 (469)
Q Consensus 135 ~~~~~~~~~~~~-~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~ 213 (469)
.+| ..+.+++.|++|+||+|.+. .+|+.+..++.|++|...+|.+..+| .+.+++.|+.+|++.+.
T Consensus 397 ---------~fpas~~~kle~LeeL~LSGNkL~--~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~- 463 (1081)
T KOG0618|consen 397 ---------SFPASKLRKLEELEELNLSGNKLT--TLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNN- 463 (1081)
T ss_pred ---------cCCHHHHhchHHhHHHhcccchhh--hhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccch-
Confidence 112 23556677777777777774 37777777777777777777777777 66677777777777643
Q ss_pred cC--cCC-CCC-CCccEEEecCCCC
Q 012173 214 LQ--SLP-QLP-PNIIFVKVNGCSS 234 (469)
Q Consensus 214 L~--~lp-~lp-~~L~~L~i~~C~~ 234 (469)
|+ .+| .+| |+|++|++.|-+.
T Consensus 464 L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 464 LSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhhhhhhCCCcccceeeccCCcc
Confidence 22 222 345 6777777776553
No 23
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.20 E-value=1.6e-11 Score=124.42 Aligned_cols=182 Identities=34% Similarity=0.535 Sum_probs=136.5
Q ss_pred hcCCCCCCcEEeeeccCCcccCcccCCCC-CCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCc
Q 012173 11 IVTTMKDLSELNLDGTSITEVPSSIELLP-GLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESL 89 (469)
Q Consensus 11 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~-~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L 89 (469)
.+..++.++.|++.++.+.+++...+.+. +|+.|+++++. +..+|..+..++.|+.|++++| .+..+|...+.+++|
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L 188 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNL 188 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhh
Confidence 33445678888888888888888777774 88888888866 7777666788888888888874 566777766678888
Q ss_pred CEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCC
Q 012173 90 EELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGA 169 (469)
Q Consensus 90 ~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ 169 (469)
+.|+++++.+..+|..+..+..|++|.+.++... ..+..+..+..+..|.+.++.+..
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~--------------------~~~~~~~~~~~l~~l~l~~n~~~~-- 246 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSII--------------------ELLSSLSNLKNLSGLELSNNKLED-- 246 (394)
T ss_pred hheeccCCccccCchhhhhhhhhhhhhhcCCcce--------------------ecchhhhhcccccccccCCceeee--
Confidence 8888888888888877767777888888777421 124556667777777777777642
Q ss_pred CCCCCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCcccCcC
Q 012173 170 IPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQSL 217 (469)
Q Consensus 170 ~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~l 217 (469)
++..++.+++++.|++++|.++.++. +..+.+|+.|+++++.....+
T Consensus 247 ~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 247 LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred ccchhccccccceecccccccccccc-ccccCccCEEeccCccccccc
Confidence 57777888888888888888888876 778888888888886554433
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.19 E-value=1.1e-11 Score=134.85 Aligned_cols=234 Identities=22% Similarity=0.353 Sum_probs=132.5
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccC--CcccCcc-cCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTS--ITEVPSS-IELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLEN 78 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~--l~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~ 78 (469)
++++..++.... .+.|+.|-+.++. +..++.. |..++.|++|||++|..+..+|.+|++|.+||+|++++ ..+..
T Consensus 532 ~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~ 609 (889)
T KOG4658|consen 532 NNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISH 609 (889)
T ss_pred ccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccc
Confidence 455556665543 4567777777664 5555433 56677777777777777777777777777777777776 35667
Q ss_pred ccccccCCCCcCEEeccCcCCCCCC-ccccCCcCCceeeccCCCCCCCcc-Cc-----ccccccCCccccccccCCCCCC
Q 012173 79 VPDTLGQVESLEELDISETAVRRPP-SSIFLMKNLRTLSLFGCNGPPSWH-LH-----LPFNLMGKSSCLVALMLPSLSG 151 (469)
Q Consensus 79 lp~~l~~l~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~l~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~l~~ 151 (469)
+|.+++++..|.+|++..+.....+ ..+..+++|++|.+.......... +. ..+..+....... .+...+..
T Consensus 610 LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~ 688 (889)
T KOG4658|consen 610 LPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLG 688 (889)
T ss_pred cchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhh
Confidence 7777777777777777776544333 333347777777765433000000 00 0000000000000 00011111
Q ss_pred CCCCC----EEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCc-----c-cc-CCCCcCEEeccCCcccCcCC--
Q 012173 152 LRSLT----KLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA-----S-IN-SLLNLKELEMEDCKRLQSLP-- 218 (469)
Q Consensus 152 l~~L~----~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-----~-i~-~l~~L~~L~L~~c~~L~~lp-- 218 (469)
+..|. .+.+.++.. ...+..+..+.+|+.|.+.++.+.+... . .. .+++|..+.+.+|..++.+.
T Consensus 689 ~~~L~~~~~~l~~~~~~~--~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~ 766 (889)
T KOG4658|consen 689 MTRLRSLLQSLSIEGCSK--RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL 766 (889)
T ss_pred hHHHHHHhHhhhhccccc--ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh
Confidence 11111 222222222 3355567777888888888887753321 1 11 15567777777887777666
Q ss_pred CCCCCccEEEecCCCCCccccc
Q 012173 219 QLPPNIIFVKVNGCSSLVTLLG 240 (469)
Q Consensus 219 ~lp~~L~~L~i~~C~~L~~l~~ 240 (469)
..||+|+.|.+..|..++.+..
T Consensus 767 ~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 767 LFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred hccCcccEEEEecccccccCCC
Confidence 3589999999999998887765
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.13 E-value=1.1e-12 Score=130.29 Aligned_cols=202 Identities=26% Similarity=0.375 Sum_probs=166.4
Q ss_pred cCcccchhc--CCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccc
Q 012173 4 QLKKFPQIV--TTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPD 81 (469)
Q Consensus 4 ~L~~lp~~~--~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~ 81 (469)
+++.+|-.- -.+..-...+|+.|++.++|..+..+..|+.|.|..|. +..+|..+++|..|.+|+|+. +.+..+|.
T Consensus 61 rlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~ 138 (722)
T KOG0532|consen 61 RLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSS-NQLSHLPD 138 (722)
T ss_pred hhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhcc-chhhcCCh
Confidence 556666432 23444556889999999999999999999999998866 778899999999999999998 46788898
Q ss_pred cccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEcc
Q 012173 82 TLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLS 161 (469)
Q Consensus 82 ~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls 161 (469)
.+..|+ |+.|-+++|.++.+|..++.+..|..|+.+.|. ...+|+.++++.+|+.|.+.
T Consensus 139 ~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne--------------------i~slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 139 GLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE--------------------IQSLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred hhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh--------------------hhhchHHhhhHHHHHHHHHh
Confidence 888776 899999999999999999999999999998876 23348889999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCcccCcCCC------CCCCccEEEecCC
Q 012173 162 DCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQSLPQ------LPPNIIFVKVNGC 232 (469)
Q Consensus 162 ~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~------lp~~L~~L~i~~C 232 (469)
.|++.. +|..+..|+ |..||++.|++..||.++..+..|++|-|.+++ |++-|. .-.-.++|++.-|
T Consensus 198 Rn~l~~--lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 198 RNHLED--LPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhh--CCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 999954 899888654 899999999999999999999999999999875 444331 1123467777777
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.10 E-value=6.3e-11 Score=120.01 Aligned_cols=173 Identities=31% Similarity=0.460 Sum_probs=147.4
Q ss_pred CCcCcccchhcCCCC-CCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccc
Q 012173 2 RLQLKKFPQIVTTMK-DLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVP 80 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~-~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp 80 (469)
++.+.++|...+.+. +|+.|+++++++..+|..++.+++|+.|++++|. +..+|...+.++.|+.|++++ +.+..+|
T Consensus 125 ~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~-N~i~~l~ 202 (394)
T COG4886 125 NNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSG-NKISDLP 202 (394)
T ss_pred CcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheeccC-CccccCc
Confidence 578889999888774 9999999999999998889999999999999987 888888776899999999999 5788899
Q ss_pred ccccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEc
Q 012173 81 DTLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDL 160 (469)
Q Consensus 81 ~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L 160 (469)
..++.+..|++|.+++|.+...+..+..+.++..|.+.++... ..+..++.+++++.|++
T Consensus 203 ~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~--------------------~~~~~~~~l~~l~~L~~ 262 (394)
T COG4886 203 PEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE--------------------DLPESIGNLSNLETLDL 262 (394)
T ss_pred hhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee--------------------eccchhccccccceecc
Confidence 8877788899999999987788888899999999987766522 11566778889999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccccC
Q 012173 161 SDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINS 199 (469)
Q Consensus 161 s~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~ 199 (469)
++|.+++ ++. ++.+.+++.|+++++.+..++.....
T Consensus 263 s~n~i~~--i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 263 SNNQISS--ISS-LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred ccccccc--ccc-ccccCccCEEeccCccccccchhhhc
Confidence 9999964 555 88999999999999999876654443
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.08 E-value=2.5e-11 Score=132.26 Aligned_cols=213 Identities=23% Similarity=0.326 Sum_probs=147.1
Q ss_pred Ccccch-hcCCCCCCcEEeeecc-CCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccccc
Q 012173 5 LKKFPQ-IVTTMKDLSELNLDGT-SITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDT 82 (469)
Q Consensus 5 L~~lp~-~~~~l~~L~~L~L~~~-~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~ 82 (469)
+..++. ++..++.|++|||++| .+.++|.+|+.|.+|++|+|+++. +..+|.++.+|++|.+|++..+..+..+|..
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i 637 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGI 637 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccch
Confidence 444444 4778999999999988 899999999999999999999955 8899999999999999999999888888888
Q ss_pred ccCCCCcCEEeccCcCCCC---CCccccCCcCCceeeccCCCCCCCccCc---cc---ccccCCccccccccCCCCCCCC
Q 012173 83 LGQVESLEELDISETAVRR---PPSSIFLMKNLRTLSLFGCNGPPSWHLH---LP---FNLMGKSSCLVALMLPSLSGLR 153 (469)
Q Consensus 83 l~~l~~L~~L~L~~~~i~~---lp~~l~~l~~L~~L~l~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~l~~l~ 153 (469)
+..|.+|++|.+....... .-..+.++++|+.+............+. .. ...+....+.....+.++..+.
T Consensus 638 ~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~ 717 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLG 717 (889)
T ss_pred hhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeeccccccc
Confidence 8889999999998765332 1233455666666665433320000000 00 0000101123344567788999
Q ss_pred CCCEEEccCCCCCCCCCCCCCCC------CCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCcccCcCCC
Q 012173 154 SLTKLDLSDCGLGEGAIPSDIGN------LHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQSLPQ 219 (469)
Q Consensus 154 ~L~~L~Ls~~~l~~~~~p~~l~~------l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 219 (469)
+|+.|.+.+|...+..+ ..... ++++..+.+.++..-..+.+..-.++|+.|.+.+|+.++.+..
T Consensus 718 ~L~~L~i~~~~~~e~~~-~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 718 NLEELSILDCGISEIVI-EWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred CcceEEEEcCCCchhhc-ccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCC
Confidence 99999999998753211 11111 3344444455555555566666778999999999988876543
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.83 E-value=3.1e-10 Score=108.58 Aligned_cols=225 Identities=21% Similarity=0.273 Sum_probs=150.7
Q ss_pred CcCcccchhcCCCCCCcEEeeeccCCcccCc-ccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccc
Q 012173 3 LQLKKFPQIVTTMKDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPD 81 (469)
Q Consensus 3 ~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~ 81 (469)
..|+++|..+. +.-..|+|+.|.|+.+|+ +|+.+++|+.|||++|....--|..+.+|.+|-.|-+.++++++.+|.
T Consensus 56 ~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 56 KGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 45788888775 677889999999999975 689999999999999886666788899999999999999889999986
Q ss_pred c-ccCCCCcCEEeccCcCCCCCC-ccccCCcCCceeeccCCCCCCCcc--C---------ccccccc-------CCcccc
Q 012173 82 T-LGQVESLEELDISETAVRRPP-SSIFLMKNLRTLSLFGCNGPPSWH--L---------HLPFNLM-------GKSSCL 141 (469)
Q Consensus 82 ~-l~~l~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~l~~~~~~~~~~--~---------~~~~~~~-------~~~~~~ 141 (469)
. ++.|..|+.|.+.-+.+..++ ..+..+++|..|.+.++..-.... + +...+-+ ... ..
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla-~~ 212 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLA-DD 212 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhh-hH
Confidence 5 789999999999999988764 456788999999998875211100 0 0000000 000 00
Q ss_pred ccccCCCCCCCCCCCEEEccCCCC------------------------CCCCCCC-CCCCCCCCcEEEcCCCCCcccC-c
Q 012173 142 VALMLPSLSGLRSLTKLDLSDCGL------------------------GEGAIPS-DIGNLHSLNELYLSKNNFVTLP-A 195 (469)
Q Consensus 142 ~~~~~~~l~~l~~L~~L~Ls~~~l------------------------~~~~~p~-~l~~l~~L~~L~L~~n~l~~lp-~ 195 (469)
....+..+++.+...-..+.+.++ .+...|. .|+.+++|++|+|++|+++.+- .
T Consensus 213 ~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~ 292 (498)
T KOG4237|consen 213 LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG 292 (498)
T ss_pred HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh
Confidence 011122222222222111111110 1111221 3678999999999999999774 4
Q ss_pred cccCCCCcCEEeccCCcccCcCCC----CCCCccEEEecC
Q 012173 196 SINSLLNLKELEMEDCKRLQSLPQ----LPPNIIFVKVNG 231 (469)
Q Consensus 196 ~i~~l~~L~~L~L~~c~~L~~lp~----lp~~L~~L~i~~ 231 (469)
++..+..++.|.|..++ ++.+.. -...|+.|++.+
T Consensus 293 aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~ 331 (498)
T KOG4237|consen 293 AFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYD 331 (498)
T ss_pred hhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecC
Confidence 78889999999999864 333321 124566666655
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=3.9e-10 Score=109.23 Aligned_cols=181 Identities=22% Similarity=0.233 Sum_probs=95.0
Q ss_pred CCCCCCcEEeeeccCCcccC--cccCCCCCCCEEeccCCCCC--cccCccCCCCCCCCEEEeeCCCCCccccc-cccCCC
Q 012173 13 TTMKDLSELNLDGTSITEVP--SSIELLPGLELLNLNDCKNL--ARVPSSINGLKSPKTLNLSGCCKLENVPD-TLGQVE 87 (469)
Q Consensus 13 ~~l~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~L~~c~~l--~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~-~l~~l~ 87 (469)
.+++.|+.+.|+++.+...+ .....|++++.|||++|-.- ..+-..+..|++|+.|+++.|...--... .-..+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 34566667777666555444 24556677777777664311 11222234566777777766543221111 112456
Q ss_pred CcCEEeccCcCCC--CCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCC
Q 012173 88 SLEELDISETAVR--RPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGL 165 (469)
Q Consensus 88 ~L~~L~L~~~~i~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l 165 (469)
.|+.|.+++|+++ ++...+..+++|+.|++.+|...... ..+...+..|++|||++|++
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~-------------------~~~~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK-------------------ATSTKILQTLQELDLSNNNL 258 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee-------------------cchhhhhhHHhhccccCCcc
Confidence 6677777777665 23333345666777777666421110 11122334566666666666
Q ss_pred CCCCCCCCCCCCCCCcEEEcCCCCCccc--Ccc-----ccCCCCcCEEeccCCc
Q 012173 166 GEGAIPSDIGNLHSLNELYLSKNNFVTL--PAS-----INSLLNLKELEMEDCK 212 (469)
Q Consensus 166 ~~~~~p~~l~~l~~L~~L~L~~n~l~~l--p~~-----i~~l~~L~~L~L~~c~ 212 (469)
.+...-...+.++.|+.|+++.|.+.++ |.. ...+++|++|++..++
T Consensus 259 i~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 259 IDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred cccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 4422224456666666666666666532 322 2446666666666653
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.81 E-value=4.1e-09 Score=93.06 Aligned_cols=113 Identities=27% Similarity=0.445 Sum_probs=41.0
Q ss_pred cCcccchhcCCCCCCcEEeeeccCCcccCcccC-CCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccccc
Q 012173 4 QLKKFPQIVTTMKDLSELNLDGTSITEVPSSIE-LLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDT 82 (469)
Q Consensus 4 ~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~-~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~ 82 (469)
-+++.|... +...+++|+|+++.|+.+.. ++ .+.+|+.|+|++|. +..++. +..++.|++|++++| .+..+++.
T Consensus 8 ~i~~~~~~~-n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~-I~~l~~-l~~L~~L~~L~L~~N-~I~~i~~~ 82 (175)
T PF14580_consen 8 MIEQIAQYN-NPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQ-ITKLEG-LPGLPRLKTLDLSNN-RISSISEG 82 (175)
T ss_dssp -----------------------------S---TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHH
T ss_pred ccccccccc-cccccccccccccccccccc-hhhhhcCCCEEECCCCC-CccccC-ccChhhhhhcccCCC-CCCccccc
Confidence 456666655 45678999999999998864 66 68999999999987 777765 788999999999995 56667555
Q ss_pred c-cCCCCcCEEeccCcCCCCCC--ccccCCcCCceeeccCCC
Q 012173 83 L-GQVESLEELDISETAVRRPP--SSIFLMKNLRTLSLFGCN 121 (469)
Q Consensus 83 l-~~l~~L~~L~L~~~~i~~lp--~~l~~l~~L~~L~l~~~~ 121 (469)
+ ..+++|++|++++|.|.++. ..+..+++|+.|++.+|+
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 5 36899999999999998653 456779999999999987
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.1e-09 Score=106.19 Aligned_cols=183 Identities=25% Similarity=0.229 Sum_probs=133.2
Q ss_pred hcCCCCCCcEEeeeccCCcc---cCcccCCCCCCCEEeccCCCCCcccCcc-CCCCCCCCEEEeeCCCCCc-cccccccC
Q 012173 11 IVTTMKDLSELNLDGTSITE---VPSSIELLPGLELLNLNDCKNLARVPSS-INGLKSPKTLNLSGCCKLE-NVPDTLGQ 85 (469)
Q Consensus 11 ~~~~l~~L~~L~L~~~~l~~---lp~~i~~l~~L~~L~L~~c~~l~~lp~~-i~~L~sL~~L~Ls~c~~l~-~lp~~l~~ 85 (469)
....+++++.|+|++|-+.. +-.-...|++|+.|+|+.|+...-..+. -..+.+|+.|.+++|.... .+-..+..
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 45679999999999986653 3444688999999999998743221111 1247889999999997653 23344556
Q ss_pred CCCcCEEeccCcC-CCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCC
Q 012173 86 VESLEELDISETA-VRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCG 164 (469)
Q Consensus 86 l~~L~~L~L~~~~-i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~ 164 (469)
.++|+.|+|..|. +..-..+...+..|+.|+|++|...... .....+.++.|..|+++.|.
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~------------------~~~~~~~l~~L~~Lnls~tg 282 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD------------------QGYKVGTLPGLNQLNLSSTG 282 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc------------------cccccccccchhhhhccccC
Confidence 8999999999994 3322333455788999999998743321 13456778999999999999
Q ss_pred CCCCCCCCC-----CCCCCCCcEEEcCCCCCcccCc--cccCCCCcCEEeccCC
Q 012173 165 LGEGAIPSD-----IGNLHSLNELYLSKNNFVTLPA--SINSLLNLKELEMEDC 211 (469)
Q Consensus 165 l~~~~~p~~-----l~~l~~L~~L~L~~n~l~~lp~--~i~~l~~L~~L~L~~c 211 (469)
+.+-.+|+. ...+++|+.|++..|++..+++ .+..+.+|+.|.+..+
T Consensus 283 i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 283 IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred cchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 877667765 5668999999999999987764 4555677777776554
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.79 E-value=5e-10 Score=103.53 Aligned_cols=132 Identities=31% Similarity=0.383 Sum_probs=68.0
Q ss_pred CCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEeccC
Q 012173 17 DLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISE 96 (469)
Q Consensus 17 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 96 (469)
.|+.|||++|.|+.+..++.-+|+++.|+++.|. +..+.. +..|.+|++|||++
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n-La~L~~L~~LDLS~------------------------ 338 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQN-LAELPQLQLLDLSG------------------------ 338 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehh-hhhcccceEeeccc------------------------
Confidence 3555555555555555555555555555555544 222222 34445555555554
Q ss_pred cCCCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCCCCCCCCC
Q 012173 97 TAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGN 176 (469)
Q Consensus 97 ~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~ 176 (469)
|.+.++-.+-..+.+.++|.+.+|..-. +..++++.+|..||+++|++.+-.-...+++
T Consensus 339 N~Ls~~~Gwh~KLGNIKtL~La~N~iE~---------------------LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~ 397 (490)
T KOG1259|consen 339 NLLAECVGWHLKLGNIKTLKLAQNKIET---------------------LSGLRKLYSLVNLDLSSNQIEELDEVNHIGN 397 (490)
T ss_pred chhHhhhhhHhhhcCEeeeehhhhhHhh---------------------hhhhHhhhhheeccccccchhhHHHhccccc
Confidence 4444333333334444444444433100 2233445566666777776643333445677
Q ss_pred CCCCcEEEcCCCCCcccCc
Q 012173 177 LHSLNELYLSKNNFVTLPA 195 (469)
Q Consensus 177 l~~L~~L~L~~n~l~~lp~ 195 (469)
+|.|+.|.|.+|.+..+|.
T Consensus 398 LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 398 LPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred ccHHHHHhhcCCCccccch
Confidence 7777777777777665553
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.78 E-value=7.1e-09 Score=91.53 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=9.5
Q ss_pred cCCCCCCCEEeccCCCCCcccCccCC-CCCCCCEEEeeCCCCCccccccccCCCCcCEEeccCcCCCCC
Q 012173 35 IELLPGLELLNLNDCKNLARVPSSIN-GLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRP 102 (469)
Q Consensus 35 i~~l~~L~~L~L~~c~~l~~lp~~i~-~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~l 102 (469)
+.+..++++|+|++|. +..+.. ++ .+.+|+.|++++| .+..+. ++..+++|++|++++|.|+.+
T Consensus 15 ~~n~~~~~~L~L~~n~-I~~Ie~-L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i 79 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQ-ISTIEN-LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSI 79 (175)
T ss_dssp ----------------------S---TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-
T ss_pred cccccccccccccccc-cccccc-hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCcc
Confidence 3344455555555544 333322 33 3445555555553 233332 344445555555555555444
No 34
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.66 E-value=1.6e-07 Score=92.89 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=28.8
Q ss_pred CCCcEEEcCCCCCcccCccccCCCCcCEEeccCCc--ccC-cCCCCCCCccEEEecCCCCC
Q 012173 178 HSLNELYLSKNNFVTLPASINSLLNLKELEMEDCK--RLQ-SLPQLPPNIIFVKVNGCSSL 235 (469)
Q Consensus 178 ~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~--~L~-~lp~lp~~L~~L~i~~C~~L 235 (469)
++|+.|++++|....+|..+. .+|+.|.++.+. .+. ....+|+++ .|.+.+|-.+
T Consensus 156 sSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL 213 (426)
T PRK15386 156 PSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLL 213 (426)
T ss_pred CcccEEEecCCCcccCccccc--ccCcEEEecccccccccCccccccccc-Eechhhhccc
Confidence 456666666665554444333 466666665432 111 122455666 6777666443
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.66 E-value=1.5e-07 Score=93.05 Aligned_cols=61 Identities=23% Similarity=0.500 Sum_probs=32.0
Q ss_pred CCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccc
Q 012173 15 MKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVP 80 (469)
Q Consensus 15 l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp 80 (469)
+++++.|++++|.++.+|. -..+|+.|++++|..+..+|..+ ..+|+.|++++|..+..+|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 4555556665555555551 12345555665555555555433 2455555555555555444
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.61 E-value=6.7e-08 Score=103.18 Aligned_cols=104 Identities=23% Similarity=0.355 Sum_probs=84.0
Q ss_pred CcEEeeeccCCc-ccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEeccC
Q 012173 18 LSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISE 96 (469)
Q Consensus 18 L~~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 96 (469)
++.|+|+++.+. .+|..++.+++|+.|+|++|.....+|..++.+++|+.|+|++|...+.+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 677888888877 6788888889999999988886678888888889999999988877778888888889999999988
Q ss_pred cCCC-CCCccccCC-cCCceeeccCCC
Q 012173 97 TAVR-RPPSSIFLM-KNLRTLSLFGCN 121 (469)
Q Consensus 97 ~~i~-~lp~~l~~l-~~L~~L~l~~~~ 121 (469)
|.+. .+|..++.+ .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 8877 667776653 456677776664
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.60 E-value=5.3e-09 Score=96.86 Aligned_cols=102 Identities=28% Similarity=0.301 Sum_probs=66.7
Q ss_pred CCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCC
Q 012173 86 VESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGL 165 (469)
Q Consensus 86 l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l 165 (469)
-..|++||+++|.|+++-.++.-++.++.|+++.|.... ..++..+++|+.||||+|.+
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~---------------------v~nLa~L~~L~~LDLS~N~L 341 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT---------------------VQNLAELPQLQLLDLSGNLL 341 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceee---------------------ehhhhhcccceEeecccchh
Confidence 346777777777777777777777777777777765321 23356677777777777766
Q ss_pred CCCCCCCCCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCC
Q 012173 166 GEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC 211 (469)
Q Consensus 166 ~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c 211 (469)
+. +..+-..+-+++.|.|++|.+.++. .++.+-+|..||++++
T Consensus 342 s~--~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N 384 (490)
T KOG1259|consen 342 AE--CVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSN 384 (490)
T ss_pred Hh--hhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhheecccccc
Confidence 42 4444455666677777777666554 4555666666666665
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.58 E-value=2.1e-09 Score=101.54 Aligned_cols=188 Identities=20% Similarity=0.246 Sum_probs=124.2
Q ss_pred hhcCCCCCCcEEeeeccCCc-----ccCcccCCCCCCCEEeccCCCCCcc-------------cCccCCCCCCCCEEEee
Q 012173 10 QIVTTMKDLSELNLDGTSIT-----EVPSSIELLPGLELLNLNDCKNLAR-------------VPSSINGLKSPKTLNLS 71 (469)
Q Consensus 10 ~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~L~~c~~l~~-------------lp~~i~~L~sL~~L~Ls 71 (469)
+.+..+++|++|+||+|.+. .+-.-+..+..|++|.|.+|..-.. ...-+.+-+.|+++...
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 33445678899999988775 1223456788899999988874321 11123445778888888
Q ss_pred CCCCCcc-----ccccccCCCCcCEEeccCcCCCC-----CCccccCCcCCceeeccCCCCCCCccCcccccccCCcccc
Q 012173 72 GCCKLEN-----VPDTLGQVESLEELDISETAVRR-----PPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCL 141 (469)
Q Consensus 72 ~c~~l~~-----lp~~l~~l~~L~~L~L~~~~i~~-----lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 141 (469)
+|. +.. +...+...+.|+.+.+..|.|.. +...+..+++|++|+|.+|.-... -
T Consensus 166 rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e---------------g 229 (382)
T KOG1909|consen 166 RNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE---------------G 229 (382)
T ss_pred ccc-cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH---------------H
Confidence 754 433 23445667889999999887762 234567789999999988762110 0
Q ss_pred ccccCCCCCCCCCCCEEEccCCCCCCCCC---CCCC-CCCCCCcEEEcCCCCCc-----ccCccccCCCCcCEEeccCCc
Q 012173 142 VALMLPSLSGLRSLTKLDLSDCGLGEGAI---PSDI-GNLHSLNELYLSKNNFV-----TLPASINSLLNLKELEMEDCK 212 (469)
Q Consensus 142 ~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~---p~~l-~~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~c~ 212 (469)
...+...+..+++|++|++++|.+.+... ...+ ...++|+.|.+.+|.++ .+-.++...+.|+.|+|++|+
T Consensus 230 s~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 230 SVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 11123445677899999999998764321 1111 33688999999999887 344456668889999999885
Q ss_pred c
Q 012173 213 R 213 (469)
Q Consensus 213 ~ 213 (469)
.
T Consensus 310 l 310 (382)
T KOG1909|consen 310 L 310 (382)
T ss_pred c
Confidence 3
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.53 E-value=2e-07 Score=99.47 Aligned_cols=108 Identities=30% Similarity=0.496 Sum_probs=55.1
Q ss_pred cCEEeccCcCCC-CCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCCCC
Q 012173 89 LEELDISETAVR-RPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGE 167 (469)
Q Consensus 89 L~~L~L~~~~i~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~ 167 (469)
++.|+|+++.+. .+|..+..+++|+.|+|++|. +.+.+|+.++.+++|+.|+|++|++.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~-------------------l~g~iP~~~~~l~~L~~LdLs~N~ls- 479 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNS-------------------IRGNIPPSLGSITSLEVLDLSYNSFN- 479 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCc-------------------ccCcCChHHhCCCCCCEEECCCCCCC-
Confidence 445555555554 345555555555555555543 12223444555555555555555554
Q ss_pred CCCCCCCCCCCCCcEEEcCCCCCc-ccCccccC-CCCcCEEeccCCcccCc
Q 012173 168 GAIPSDIGNLHSLNELYLSKNNFV-TLPASINS-LLNLKELEMEDCKRLQS 216 (469)
Q Consensus 168 ~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~i~~-l~~L~~L~L~~c~~L~~ 216 (469)
+.+|..++.+++|+.|+|++|+++ .+|..+.. +.++..+++.+|+.+..
T Consensus 480 g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccC
Confidence 445555555555555555555555 45544433 23444555555544433
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=8.9e-10 Score=101.84 Aligned_cols=105 Identities=22% Similarity=0.240 Sum_probs=64.1
Q ss_pred CCcEEeeeccCCc--ccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccc--ccccCCCCcCEE
Q 012173 17 DLSELNLDGTSIT--EVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVP--DTLGQVESLEEL 92 (469)
Q Consensus 17 ~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp--~~l~~l~~L~~L 92 (469)
.|++|||+...|+ .+..-++.+.+|+.|.|.+...-..+-..|.+-..|+.|++++|+.+.... -.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4777788777766 455556777777777777766444444556666778888888877766533 235567777777
Q ss_pred eccCcCCCCC--CccccC-CcCCceeeccCCC
Q 012173 93 DISETAVRRP--PSSIFL-MKNLRTLSLFGCN 121 (469)
Q Consensus 93 ~L~~~~i~~l--p~~l~~-l~~L~~L~l~~~~ 121 (469)
+++.|....- ...+.+ -++|+.|+++|+.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence 7777754421 111111 2345556666554
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.42 E-value=3.7e-08 Score=100.32 Aligned_cols=106 Identities=25% Similarity=0.373 Sum_probs=67.3
Q ss_pred cCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCE
Q 012173 12 VTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEE 91 (469)
Q Consensus 12 ~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~ 91 (469)
++.+++|+.|++.+++|.++...+..+++|++|++++|. +..+.. +..++.|+.|++++| .+..+. .+..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGN-LISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-hhhccchhhheeccC-cchhcc-CCccchhhhc
Confidence 445667777777777777766656677777777777755 555443 556666777777774 333332 3444677777
Q ss_pred EeccCcCCCCCCcc-ccCCcCCceeeccCCC
Q 012173 92 LDISETAVRRPPSS-IFLMKNLRTLSLFGCN 121 (469)
Q Consensus 92 L~L~~~~i~~lp~~-l~~l~~L~~L~l~~~~ 121 (469)
+++++|.+..+... +..+.+|+.+.+.++.
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 77777777665443 3566666666666655
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.37 E-value=2.6e-08 Score=94.31 Aligned_cols=186 Identities=20% Similarity=0.261 Sum_probs=115.9
Q ss_pred cCCCCCCcEEeeeccCCc-----ccCcccCCCCCCCEEeccCCC---CCcccCcc-------CCCCCCCCEEEeeCCCCC
Q 012173 12 VTTMKDLSELNLDGTSIT-----EVPSSIELLPGLELLNLNDCK---NLARVPSS-------INGLKSPKTLNLSGCCKL 76 (469)
Q Consensus 12 ~~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~L~~c~---~l~~lp~~-------i~~L~sL~~L~Ls~c~~l 76 (469)
...+..+++|+|+||.+. .+...+.+.+.|+.-++++-- ....+|.. +-..++|++|+||+|-.-
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 345778899999999876 345556777888888888621 11123332 345668999999987654
Q ss_pred ccccc----cccCCCCcCEEeccCcCCCCCC--------------ccccCCcCCceeeccCCCCCCCccCcccccccCCc
Q 012173 77 ENVPD----TLGQVESLEELDISETAVRRPP--------------SSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKS 138 (469)
Q Consensus 77 ~~lp~----~l~~l~~L~~L~L~~~~i~~lp--------------~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 138 (469)
...++ -+.++..|++|.|.+|++.... .-++.-+.|+++...+|..-..
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~------------- 172 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG------------- 172 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc-------------
Confidence 44333 3556788999999988876321 1233456777777666542110
Q ss_pred cccccccCCCCCCCCCCCEEEccCCCCCCCCC---CCCCCCCCCCcEEEcCCCCCc-----ccCccccCCCCcCEEeccC
Q 012173 139 SCLVALMLPSLSGLRSLTKLDLSDCGLGEGAI---PSDIGNLHSLNELYLSKNNFV-----TLPASINSLLNLKELEMED 210 (469)
Q Consensus 139 ~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~---p~~l~~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~ 210 (469)
....+...+...+.|+.+.++.|.+....+ ...+..+++|+.|||..|-|+ .+-..+..++.|+.|++++
T Consensus 173 --ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 173 --GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred --cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 001112223445678888888877642222 223566788888888888776 3444556677788888888
Q ss_pred Cc
Q 012173 211 CK 212 (469)
Q Consensus 211 c~ 212 (469)
|.
T Consensus 251 cl 252 (382)
T KOG1909|consen 251 CL 252 (382)
T ss_pred cc
Confidence 73
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.36 E-value=4.9e-07 Score=65.42 Aligned_cols=58 Identities=33% Similarity=0.574 Sum_probs=41.3
Q ss_pred CCCcEEeeeccCCcccCc-ccCCCCCCCEEeccCCCCCcccC-ccCCCCCCCCEEEeeCCC
Q 012173 16 KDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNLARVP-SSINGLKSPKTLNLSGCC 74 (469)
Q Consensus 16 ~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp-~~i~~L~sL~~L~Ls~c~ 74 (469)
|+|++|++++|+++.+|. .+..+++|++|++++|. +..+| ..+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 467788888888887764 56778888888888766 44444 456777777777777763
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.21 E-value=1.7e-07 Score=95.48 Aligned_cols=181 Identities=29% Similarity=0.390 Sum_probs=123.0
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPD 81 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~ 81 (469)
+|+|+++...+..+++|++|+|++|.|+.+.. +..++.|+.|++++|. +..++. +..+++|+.+++++|.... +..
T Consensus 104 ~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~-i~~~~~-~~~l~~L~~l~l~~n~i~~-ie~ 179 (414)
T KOG0531|consen 104 DNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNL-ISDISG-LESLKSLKLLDLSYNRIVD-IEN 179 (414)
T ss_pred ccchhhcccchhhhhcchheeccccccccccc-hhhccchhhheeccCc-chhccC-CccchhhhcccCCcchhhh-hhh
Confidence 57788888867789999999999999999876 8889999999999987 666665 6669999999999975443 332
Q ss_pred c-ccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCC--CCCEE
Q 012173 82 T-LGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLR--SLTKL 158 (469)
Q Consensus 82 ~-l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~L~~L 158 (469)
. +..+.+|+.+++.+|.+..+. .+..+..+..+++..+.... ...+..+. +|+.+
T Consensus 180 ~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~---------------------~~~l~~~~~~~L~~l 237 (414)
T KOG0531|consen 180 DELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISK---------------------LEGLNELVMLHLREL 237 (414)
T ss_pred hhhhhccchHHHhccCCchhccc-chHHHHHHHHhhccccccee---------------------ccCcccchhHHHHHH
Confidence 2 577899999999999887653 23334444444555443111 11111222 37788
Q ss_pred EccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCC
Q 012173 159 DLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC 211 (469)
Q Consensus 159 ~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c 211 (469)
+++++++.. .+..+..+..+..|++..+.+..+. .+.....+..+.....
T Consensus 238 ~l~~n~i~~--~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~ 287 (414)
T KOG0531|consen 238 YLSGNRISR--SPEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDN 287 (414)
T ss_pred hcccCcccc--ccccccccccccccchhhccccccc-cccccchHHHhccCcc
Confidence 888887743 4356667777888888877766443 2333444444444443
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.11 E-value=3.7e-06 Score=60.79 Aligned_cols=59 Identities=36% Similarity=0.611 Sum_probs=39.0
Q ss_pred CCCCEEeccCCCCCcccCc-cCCCCCCCCEEEeeCCCCCcccc-ccccCCCCcCEEeccCcCC
Q 012173 39 PGLELLNLNDCKNLARVPS-SINGLKSPKTLNLSGCCKLENVP-DTLGQVESLEELDISETAV 99 (469)
Q Consensus 39 ~~L~~L~L~~c~~l~~lp~-~i~~L~sL~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~i 99 (469)
++|++|++++|. +..+|. .+.++++|++|++++|. +..++ ..+..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCcC
Confidence 467777777764 666663 56677777777777654 34443 4567777777777777653
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=1.5e-06 Score=80.80 Aligned_cols=216 Identities=16% Similarity=0.136 Sum_probs=114.3
Q ss_pred EEeeeccCCcccCc--cc-CCCCCCCEEeccCCCCCc--ccCccCCCCCCCCEEEeeCCCCCc---cccccccCCCCcCE
Q 012173 20 ELNLDGTSITEVPS--SI-ELLPGLELLNLNDCKNLA--RVPSSINGLKSPKTLNLSGCCKLE---NVPDTLGQVESLEE 91 (469)
Q Consensus 20 ~L~L~~~~l~~lp~--~i-~~l~~L~~L~L~~c~~l~--~lp~~i~~L~sL~~L~Ls~c~~l~---~lp~~l~~l~~L~~ 91 (469)
.|.+.++.|...-+ .+ ..+..++.|||.+|.... .+-..+.+|+.|++|+++.|+.-. .+| ..+.+|+.
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~ 125 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRV 125 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEE
Confidence 44555555443221 12 335566666666655221 222223456666666666543221 222 23456666
Q ss_pred EeccCcCCC--CCCccccCCcCCceeeccCCCC----CCCcc---CcccccccCCcccccc---ccCCCCCCCCCCCEEE
Q 012173 92 LDISETAVR--RPPSSIFLMKNLRTLSLFGCNG----PPSWH---LHLPFNLMGKSSCLVA---LMLPSLSGLRSLTKLD 159 (469)
Q Consensus 92 L~L~~~~i~--~lp~~l~~l~~L~~L~l~~~~~----~~~~~---~~~~~~~~~~~~~~~~---~~~~~l~~l~~L~~L~ 159 (469)
|-|.++++. ...+.+..++.++.|.++.|+. ..... .+.....+....|... ....--..++++..+-
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 666666443 4444555566666665555421 00000 0000000000000000 0000112356788888
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCc--cccCCCCcCEEeccCCcccCcCCCCCCCccEEEecCCCCCcc
Q 012173 160 LSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA--SINSLLNLKELEMEDCKRLQSLPQLPPNIIFVKVNGCSSLVT 237 (469)
Q Consensus 160 Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~--~i~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L~i~~C~~L~~ 237 (469)
+..|.+.+..-......++.+-.|+|+.+++.++-+ .+..++.|..|.+.+.+....+.. ..-+.|-+...++++.
T Consensus 206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~--~err~llIaRL~~v~v 283 (418)
T KOG2982|consen 206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG--GERRFLLIARLTKVQV 283 (418)
T ss_pred eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC--CcceEEEEeeccceEE
Confidence 888866544444556677888899999999986543 678899999999999887776654 2334555666777776
Q ss_pred ccc
Q 012173 238 LLG 240 (469)
Q Consensus 238 l~~ 240 (469)
+.+
T Consensus 284 LNG 286 (418)
T KOG2982|consen 284 LNG 286 (418)
T ss_pred ecC
Confidence 655
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=1.1e-05 Score=53.89 Aligned_cols=40 Identities=38% Similarity=0.684 Sum_probs=30.0
Q ss_pred CCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccC
Q 012173 16 KDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVP 56 (469)
Q Consensus 16 ~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp 56 (469)
++|++|++++|+|+++|..+++|++|++|++++|. +..++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 47888888888888888778888888888888876 54444
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=4e-07 Score=84.58 Aligned_cols=112 Identities=21% Similarity=0.280 Sum_probs=76.7
Q ss_pred hhcCCCCCCcEEeeeccCCc-ccCcccCCCCCCCEEeccCCCCCcccC--ccCCCCCCCCEEEeeCCCCCccccc-cccC
Q 012173 10 QIVTTMKDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNLARVP--SSINGLKSPKTLNLSGCCKLENVPD-TLGQ 85 (469)
Q Consensus 10 ~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~c~~l~~lp--~~i~~L~sL~~L~Ls~c~~l~~lp~-~l~~ 85 (469)
-.+..+..|+.|.|.|..+. .+-..|.+-.+|+.|||+.|..+.+.. --+.+++.|..|+++.|......-. .+.+
T Consensus 204 ~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~h 283 (419)
T KOG2120|consen 204 GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAH 283 (419)
T ss_pred HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhh
Confidence 34566788999999999887 566678888999999999998776432 2256789999999999976543221 1222
Q ss_pred -CCCcCEEeccCcCC----CCCCccccCCcCCceeeccCCC
Q 012173 86 -VESLEELDISETAV----RRPPSSIFLMKNLRTLSLFGCN 121 (469)
Q Consensus 86 -l~~L~~L~L~~~~i----~~lp~~l~~l~~L~~L~l~~~~ 121 (469)
-++|..|+++++.- ..+..-..++++|..|||++|.
T Consensus 284 ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 284 ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence 36789999998732 1222223345666666666554
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.77 E-value=2e-07 Score=95.80 Aligned_cols=117 Identities=29% Similarity=0.295 Sum_probs=67.4
Q ss_pred CcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCccCccc
Q 012173 52 LARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLP 131 (469)
Q Consensus 52 l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 131 (469)
+..+..++.-++.|+.|+|++|. +.... .+..++.|++|||+.|.++.+|..-..-..|+.|.+.+|...
T Consensus 176 L~~mD~SLqll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~-------- 245 (1096)
T KOG1859|consen 176 LVLMDESLQLLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALT-------- 245 (1096)
T ss_pred HHhHHHHHHHHHHhhhhccchhh-hhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHH--------
Confidence 33344444445666666776643 33332 555666677777777766666543222223666666665411
Q ss_pred ccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCc
Q 012173 132 FNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV 191 (469)
Q Consensus 132 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~ 191 (469)
.+..+.++.+|+.||+++|-+.+-.-..-+..+..|+.|.|.||.+-
T Consensus 246 -------------tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 246 -------------TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred -------------hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 02335567778888888887654333344566677888888887654
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.73 E-value=2.8e-05 Score=51.89 Aligned_cols=33 Identities=36% Similarity=0.593 Sum_probs=18.0
Q ss_pred CCcEEEcCCCCCcccCccccCCCCcCEEeccCC
Q 012173 179 SLNELYLSKNNFVTLPASINSLLNLKELEMEDC 211 (469)
Q Consensus 179 ~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c 211 (469)
+|++|++++|+++.+|..+.++++|+.|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 455555555555555555555566666665555
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.61 E-value=1.5e-05 Score=85.39 Aligned_cols=154 Identities=27% Similarity=0.254 Sum_probs=100.0
Q ss_pred CCCCEEeccCCCCCcc-cCccCC-CCCCCCEEEeeCCCCC-ccccccccCCCCcCEEeccCcCCCCCCccccCCcCCcee
Q 012173 39 PGLELLNLNDCKNLAR-VPSSIN-GLKSPKTLNLSGCCKL-ENVPDTLGQVESLEELDISETAVRRPPSSIFLMKNLRTL 115 (469)
Q Consensus 39 ~~L~~L~L~~c~~l~~-lp~~i~-~L~sL~~L~Ls~c~~l-~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L 115 (469)
.+|++|+++|...+.. -|..++ -|++|+.|.++|=... ..+-..-.++++|..||+++|+++.+ ..+.+|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 6788999988554422 122232 3789999999873221 12334456789999999999999988 778999999999
Q ss_pred eccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCC-C----CCCCCCCCCCcEEEcCCCCC
Q 012173 116 SLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGA-I----PSDIGNLHSLNELYLSKNNF 190 (469)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~-~----p~~l~~l~~L~~L~L~~n~l 190 (469)
.+.+-..... .....+..+++|+.||+|........ + .+.-..+|.|+.||.+++.+
T Consensus 201 ~mrnLe~e~~------------------~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 201 SMRNLEFESY------------------QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred hccCCCCCch------------------hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 8876441110 11234567899999999987653221 0 01123478999999999887
Q ss_pred c--ccCccccCCCCcCEEeccCC
Q 012173 191 V--TLPASINSLLNLKELEMEDC 211 (469)
Q Consensus 191 ~--~lp~~i~~l~~L~~L~L~~c 211 (469)
. .+-..+..-++|+.+.+-+|
T Consensus 263 ~~~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 263 NEEILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred hHHHHHHHHHhCccHhhhhhhhh
Confidence 7 22333445566666655544
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.56 E-value=2.1e-06 Score=88.64 Aligned_cols=114 Identities=26% Similarity=0.334 Sum_probs=86.9
Q ss_pred CcCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCcc-CCCCCCCCEEEeeCCCCCccccc
Q 012173 3 LQLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSS-INGLKSPKTLNLSGCCKLENVPD 81 (469)
Q Consensus 3 ~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~-i~~L~sL~~L~Ls~c~~l~~lp~ 81 (469)
|+|..+...+.-++.|+.|+|++|+++++. .+..|++|++|||+.|. +..+|.- ...+. |+.|++++| -++++ .
T Consensus 174 N~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN-~l~tL-~ 248 (1096)
T KOG1859|consen 174 NRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNN-ALTTL-R 248 (1096)
T ss_pred hhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeeccc-HHHhh-h
Confidence 344555556666788999999999999887 58999999999999976 7777752 22333 999999884 55555 4
Q ss_pred cccCCCCcCEEeccCcCCCCCC--ccccCCcCCceeeccCCC
Q 012173 82 TLGQVESLEELDISETAVRRPP--SSIFLMKNLRTLSLFGCN 121 (469)
Q Consensus 82 ~l~~l~~L~~L~L~~~~i~~lp--~~l~~l~~L~~L~l~~~~ 121 (469)
++.+|.+|+.||+++|-+.+.. .-+..|..|+.|.|.||+
T Consensus 249 gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 249 GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 6788999999999999777542 235567888999999876
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.48 E-value=3.7e-06 Score=81.65 Aligned_cols=231 Identities=20% Similarity=0.252 Sum_probs=124.9
Q ss_pred cchhcCCCCCCcEEeeecc-CCccc-Cccc-CCCCCCCEEeccCCCCCcccC--ccCCCCCCCCEEEeeCCCCCcc--cc
Q 012173 8 FPQIVTTMKDLSELNLDGT-SITEV-PSSI-ELLPGLELLNLNDCKNLARVP--SSINGLKSPKTLNLSGCCKLEN--VP 80 (469)
Q Consensus 8 lp~~~~~l~~L~~L~L~~~-~l~~l-p~~i-~~l~~L~~L~L~~c~~l~~lp--~~i~~L~sL~~L~Ls~c~~l~~--lp 80 (469)
+-.+..+++|++.|.+.+| ++++- -.++ ..+++|++|+|..|..+.... .....+++|++|+++.|..+.. +-
T Consensus 156 lrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~ 235 (483)
T KOG4341|consen 156 LRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQ 235 (483)
T ss_pred hhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcch
Confidence 3345567888999988888 55532 1223 568888888888888775421 1234578888888888876654 11
Q ss_pred ccccCCCCcCEEeccCcCCCCC---CccccCCcCCceeeccCCCCCCCccC------cccccccCCcc--ccccccCC-C
Q 012173 81 DTLGQVESLEELDISETAVRRP---PSSIFLMKNLRTLSLFGCNGPPSWHL------HLPFNLMGKSS--CLVALMLP-S 148 (469)
Q Consensus 81 ~~l~~l~~L~~L~L~~~~i~~l---p~~l~~l~~L~~L~l~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~-~ 148 (469)
......++++.+.+.+|.=.++ -..-+...-+.++++..|..+.+... ...+..+..++ ........ -
T Consensus 236 ~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL 315 (483)
T KOG4341|consen 236 ALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWAL 315 (483)
T ss_pred HHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHH
Confidence 2223345566665554421111 00011122233334334432222110 00000000000 00111111 1
Q ss_pred CCCCCCCCEEEccCCC-CCCCCCCCCCCCCCCCcEEEcCCCCCc---ccCccccCCCCcCEEeccCCcccCcC--C----
Q 012173 149 LSGLRSLTKLDLSDCG-LGEGAIPSDIGNLHSLNELYLSKNNFV---TLPASINSLLNLKELEMEDCKRLQSL--P---- 218 (469)
Q Consensus 149 l~~l~~L~~L~Ls~~~-l~~~~~p~~l~~l~~L~~L~L~~n~l~---~lp~~i~~l~~L~~L~L~~c~~L~~l--p---- 218 (469)
-.++++|+.|-++.|+ +++..+-..-.+.+.|+.|++.++... ++-..-.+++.|+.|.+++|..++.- .
T Consensus 316 g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~ 395 (483)
T KOG4341|consen 316 GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSS 395 (483)
T ss_pred hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhh
Confidence 2356888999998885 333222223345688899998887554 34444467899999999999766543 1
Q ss_pred --CCCCCccEEEecCCCCCccc
Q 012173 219 --QLPPNIIFVKVNGCSSLVTL 238 (469)
Q Consensus 219 --~lp~~L~~L~i~~C~~L~~l 238 (469)
.-...+..+.+.+|+.++.-
T Consensus 396 ~~c~~~~l~~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 396 SSCSLEGLEVLELDNCPLITDA 417 (483)
T ss_pred ccccccccceeeecCCCCchHH
Confidence 12356777888888876543
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.42 E-value=1.4e-05 Score=85.70 Aligned_cols=154 Identities=18% Similarity=0.281 Sum_probs=100.9
Q ss_pred CCCcEEeeecc-CCc-ccCcccC-CCCCCCEEeccCCCCCc-ccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCE
Q 012173 16 KDLSELNLDGT-SIT-EVPSSIE-LLPGLELLNLNDCKNLA-RVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEE 91 (469)
Q Consensus 16 ~~L~~L~L~~~-~l~-~lp~~i~-~l~~L~~L~L~~c~~l~-~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~ 91 (469)
.+|+.|+++|. .+. .-|..+| .||.|+.|.+.+=.... .+-.-..++++|..||+|++ .+..+ .++++|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 57999999986 333 3344453 58999999998833211 11122346789999999995 45555 78899999999
Q ss_pred EeccCcCCCCC--CccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCC
Q 012173 92 LDISETAVRRP--PSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGA 169 (469)
Q Consensus 92 L~L~~~~i~~l--p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ 169 (469)
|.+.+-.+..- -..+.+|++|+.||++.-...... .......+.-..+|.|+.||.|+..+.+..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-------------~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-------------KIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccch-------------HHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 99988766642 245778999999999876533221 112222344455889999999988775433
Q ss_pred CCCCCCCCCCCcEEE
Q 012173 170 IPSDIGNLHSLNELY 184 (469)
Q Consensus 170 ~p~~l~~l~~L~~L~ 184 (469)
+...+...++|+.+.
T Consensus 267 le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 267 LEELLNSHPNLQQIA 281 (699)
T ss_pred HHHHHHhCccHhhhh
Confidence 333333445555444
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.35 E-value=6.5e-05 Score=69.33 Aligned_cols=85 Identities=19% Similarity=0.313 Sum_probs=46.3
Q ss_pred CCCCcEEeeeccCCc-----ccCcccCCCCCCCEEeccCCCCCc----ccC-------ccCCCCCCCCEEEeeCCCCCcc
Q 012173 15 MKDLSELNLDGTSIT-----EVPSSIELLPGLELLNLNDCKNLA----RVP-------SSINGLKSPKTLNLSGCCKLEN 78 (469)
Q Consensus 15 l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~L~~c~~l~----~lp-------~~i~~L~sL~~L~Ls~c~~l~~ 78 (469)
+..+..++|+||.|. .+...|.+-.+|+..+++.- ... .+| ..+-+++.|+..+||+|-.-..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 556667777777664 23444555666666666641 111 122 1234566666666666555444
Q ss_pred cccc----ccCCCCcCEEeccCcCCC
Q 012173 79 VPDT----LGQVESLEELDISETAVR 100 (469)
Q Consensus 79 lp~~----l~~l~~L~~L~L~~~~i~ 100 (469)
.|+. +.+-+.|++|.+++|++.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCC
Confidence 4443 334556666666666554
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.15 E-value=0.0007 Score=60.05 Aligned_cols=101 Identities=20% Similarity=0.283 Sum_probs=69.1
Q ss_pred CcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccccccc-CCCCcCEEeccC
Q 012173 18 LSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLG-QVESLEELDISE 96 (469)
Q Consensus 18 L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~-~l~~L~~L~L~~ 96 (469)
=+.++|.+.++..+..-=.-+.....+||++|. +..++. +..++.|.+|.++.|. +..+...+. -+++|..|.+.+
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNd-l~~l~~-lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDND-LRKLDN-LPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccccchhhccccccccceecccccc-hhhccc-CCCccccceEEecCCc-ceeeccchhhhccccceEEecC
Confidence 456777776665443311224577888999876 555554 6678899999998854 444444444 457799999999
Q ss_pred cCCCCCC--ccccCCcCCceeeccCCC
Q 012173 97 TAVRRPP--SSIFLMKNLRTLSLFGCN 121 (469)
Q Consensus 97 ~~i~~lp--~~l~~l~~L~~L~l~~~~ 121 (469)
|.|.++- ..+..++.|++|.+-+|.
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCc
Confidence 9888662 345678888999888776
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.13 E-value=2.4e-05 Score=64.89 Aligned_cols=103 Identities=19% Similarity=0.303 Sum_probs=73.4
Q ss_pred CCcEEeeeccCCcccCcc---cCCCCCCCEEeccCCCCCcccCccCCC-CCCCCEEEeeCCCCCccccccccCCCCcCEE
Q 012173 17 DLSELNLDGTSITEVPSS---IELLPGLELLNLNDCKNLARVPSSING-LKSPKTLNLSGCCKLENVPDTLGQVESLEEL 92 (469)
Q Consensus 17 ~L~~L~L~~~~l~~lp~~---i~~l~~L~~L~L~~c~~l~~lp~~i~~-L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L 92 (469)
.+..++|+.|.+..+++. +.....|...+|++|. ++.+|..+.. .+.+++|++++ +.+..+|+.+..++.|+.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhc
Confidence 455677888777655543 4555666667888866 6667765543 34677888877 5677788888888888888
Q ss_pred eccCcCCCCCCccccCCcCCceeeccCCC
Q 012173 93 DISETAVRRPPSSIFLMKNLRTLSLFGCN 121 (469)
Q Consensus 93 ~L~~~~i~~lp~~l~~l~~L~~L~l~~~~ 121 (469)
++..|.+...|.-+..|.+|-.|+..++.
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred ccccCccccchHHHHHHHhHHHhcCCCCc
Confidence 88888888777777777777777776654
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.11 E-value=3.3e-05 Score=64.13 Aligned_cols=92 Identities=21% Similarity=0.341 Sum_probs=79.8
Q ss_pred cCCCCCCcEEeeeccCCcccCccc-CCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcC
Q 012173 12 VTTMKDLSELNLDGTSITEVPSSI-ELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLE 90 (469)
Q Consensus 12 ~~~l~~L~~L~L~~~~l~~lp~~i-~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~ 90 (469)
+....+|...+|++|.+..+|..+ ...+-++.|+|++|. +..+|..+..++.|+.|+++.| .+...|+.+..+.+|-
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLD 126 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHH
Confidence 345577888999999999999887 455689999999976 8899999999999999999985 6677888888899999
Q ss_pred EEeccCcCCCCCCcc
Q 012173 91 ELDISETAVRRPPSS 105 (469)
Q Consensus 91 ~L~L~~~~i~~lp~~ 105 (469)
.|+..++++.++|..
T Consensus 127 ~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 127 MLDSPENARAEIDVD 141 (177)
T ss_pred HhcCCCCccccCcHH
Confidence 999999999988765
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.72 E-value=0.00018 Score=66.47 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=16.6
Q ss_pred CCCCCCCEEeccCCCCCcccCcc----CCCCCCCCEEEeeCC
Q 012173 36 ELLPGLELLNLNDCKNLARVPSS----INGLKSPKTLNLSGC 73 (469)
Q Consensus 36 ~~l~~L~~L~L~~c~~l~~lp~~----i~~L~sL~~L~Ls~c 73 (469)
-+|++|+..+|++|......|.. |.+-+.|++|.+++|
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 34455555555554433333321 333344555555443
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.65 E-value=0.0035 Score=55.71 Aligned_cols=104 Identities=22% Similarity=0.389 Sum_probs=79.1
Q ss_pred CCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCC-CCCCCCEEEeeCCCCCcccc--ccccCCCCcCE
Q 012173 15 MKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSIN-GLKSPKTLNLSGCCKLENVP--DTLGQVESLEE 91 (469)
Q Consensus 15 l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~-~L~sL~~L~Ls~c~~l~~lp--~~l~~l~~L~~ 91 (469)
+.+...++|++|.+..++. +..++.|..|.|.+|. +..+.+.+. .+++|+.|.|.+|+ +..+. ..+..++.|++
T Consensus 41 ~d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhhccc-CCCccccceEEecCCc-ceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccce
Confidence 3456789999999998876 8889999999999977 555544444 35789999999865 44332 33667899999
Q ss_pred EeccCcCCCCCC----ccccCCcCCceeeccCCC
Q 012173 92 LDISETAVRRPP----SSIFLMKNLRTLSLFGCN 121 (469)
Q Consensus 92 L~L~~~~i~~lp----~~l~~l~~L~~L~l~~~~ 121 (469)
|.+-+|.++.-. --+..+++|+.||+.+-.
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 999999887543 235678999999997754
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.00074 Score=63.33 Aligned_cols=178 Identities=21% Similarity=0.232 Sum_probs=103.5
Q ss_pred CCCCCcEEeeeccCCc---ccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCC-ccccccccCCCCc
Q 012173 14 TMKDLSELNLDGTSIT---EVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKL-ENVPDTLGQVESL 89 (469)
Q Consensus 14 ~l~~L~~L~L~~~~l~---~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l-~~lp~~l~~l~~L 89 (469)
.+.+++.|+|.+|.|. ++..-+.+||.|+.|+|+.|..-..+..--..+.+|++|.|.|...- ...-..+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 4678999999999887 45555689999999999987633222111134679999999884322 1233446678888
Q ss_pred CEEeccCcCCCCCC---ccccCC-cCCceeeccCCCCCCCccCcccccccCC------cccc--ccccCCCCCCCCCCCE
Q 012173 90 EELDISETAVRRPP---SSIFLM-KNLRTLSLFGCNGPPSWHLHLPFNLMGK------SSCL--VALMLPSLSGLRSLTK 157 (469)
Q Consensus 90 ~~L~L~~~~i~~lp---~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~l~~l~~L~~ 157 (469)
++|+++.|.++.+- ..+... +.+++|.+.+|....-.........+.. ..+. ...-......++.+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 88888888554321 111111 2344444444431000000000000000 0000 0011233445677778
Q ss_pred EEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCc
Q 012173 158 LDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV 191 (469)
Q Consensus 158 L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~ 191 (469)
|+|+.+++-..+-.+.+..++.|..|.++.+.+.
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 9999998854445567888999999999998775
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.49 E-value=0.0012 Score=60.90 Aligned_cols=83 Identities=23% Similarity=0.322 Sum_probs=44.5
Q ss_pred CCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCC--CCCccccccccCCCCcCEEeccCcCCCCC--CccccCCcCC
Q 012173 37 LLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGC--CKLENVPDTLGQVESLEELDISETAVRRP--PSSIFLMKNL 112 (469)
Q Consensus 37 ~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c--~~l~~lp~~l~~l~~L~~L~L~~~~i~~l--p~~l~~l~~L 112 (469)
.+..|+.|.+.++. +..+-. +-.|++|+.|.++.| .....++.-...+++|++|++++|.|..+ ...+..+.+|
T Consensus 41 ~~~~le~ls~~n~g-ltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVG-LTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccc-eeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 34455555555544 222211 234666777777766 33344444444557777777777766532 1223455666
Q ss_pred ceeeccCCC
Q 012173 113 RTLSLFGCN 121 (469)
Q Consensus 113 ~~L~l~~~~ 121 (469)
..|++++|.
T Consensus 119 ~~Ldl~n~~ 127 (260)
T KOG2739|consen 119 KSLDLFNCS 127 (260)
T ss_pred hhhhcccCC
Confidence 667776665
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.42 E-value=0.00048 Score=67.34 Aligned_cols=184 Identities=20% Similarity=0.247 Sum_probs=87.5
Q ss_pred CCCCcEEeeecc-CCc--ccCcccCCCCCCCEEeccCCCCCcccC--ccCCCCCCCCEEEeeCCCCCccccc-c-ccCCC
Q 012173 15 MKDLSELNLDGT-SIT--EVPSSIELLPGLELLNLNDCKNLARVP--SSINGLKSPKTLNLSGCCKLENVPD-T-LGQVE 87 (469)
Q Consensus 15 l~~L~~L~L~~~-~l~--~lp~~i~~l~~L~~L~L~~c~~l~~lp--~~i~~L~sL~~L~Ls~c~~l~~lp~-~-l~~l~ 87 (469)
++.++.+.++|| .+. .+-..-+++.-+..+|+..|..+.... ..-..+..|+.|+.++|..++..+- . ..+..
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~ 320 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH 320 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC
Confidence 445555655555 222 111112344455555655654333211 1112355666666666665543221 1 22446
Q ss_pred CcCEEeccCcC-CCCC--CccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCC
Q 012173 88 SLEELDISETA-VRRP--PSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCG 164 (469)
Q Consensus 88 ~L~~L~L~~~~-i~~l--p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~ 164 (469)
+|+.|.+.+|. ++.. ..--.++..|+.+++.+|...... .+..--.+++.|++|.++.|.
T Consensus 321 ~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~-----------------tL~sls~~C~~lr~lslshce 383 (483)
T KOG4341|consen 321 NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG-----------------TLASLSRNCPRLRVLSLSHCE 383 (483)
T ss_pred ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh-----------------hHhhhccCCchhccCChhhhh
Confidence 66666666653 2211 111124556666666655422110 111122356666666666664
Q ss_pred CCCCC----CCCCCCCCCCCcEEEcCCCCCc--ccCccccCCCCcCEEeccCCcccC
Q 012173 165 LGEGA----IPSDIGNLHSLNELYLSKNNFV--TLPASINSLLNLKELEMEDCKRLQ 215 (469)
Q Consensus 165 l~~~~----~p~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~ 215 (469)
+..+. +...-..+..|+.|.|+++... ..-..+..+++|+.+++-+|....
T Consensus 384 ~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 384 LITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred hhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 32111 1112234556677777776554 233345566777777777776554
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.30 E-value=0.00028 Score=73.10 Aligned_cols=108 Identities=30% Similarity=0.434 Sum_probs=45.8
Q ss_pred CCCCcEEeeecc-CCcc--cCcccCCCCCCCEEeccCC-CCCcccC----ccCCCCCCCCEEEeeCCCCCccc-ccccc-
Q 012173 15 MKDLSELNLDGT-SITE--VPSSIELLPGLELLNLNDC-KNLARVP----SSINGLKSPKTLNLSGCCKLENV-PDTLG- 84 (469)
Q Consensus 15 l~~L~~L~L~~~-~l~~--lp~~i~~l~~L~~L~L~~c-~~l~~lp----~~i~~L~sL~~L~Ls~c~~l~~l-p~~l~- 84 (469)
+++|+.|.+.++ .+.. +-.....+++|+.|++++| ......+ .....+.+|+.|+++.|..+... -..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 455555555554 3433 2233455555555555552 2111111 11223455555555555433211 11111
Q ss_pred CCCCcCEEeccCcC-CC--CCCccccCCcCCceeeccCCCC
Q 012173 85 QVESLEELDISETA-VR--RPPSSIFLMKNLRTLSLFGCNG 122 (469)
Q Consensus 85 ~l~~L~~L~L~~~~-i~--~lp~~l~~l~~L~~L~l~~~~~ 122 (469)
.+++|++|.+.+|. ++ .+-.....+++|+.|++++|..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 24555555544443 22 1222223345555555555543
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.17 E-value=0.00016 Score=75.00 Aligned_cols=160 Identities=29% Similarity=0.375 Sum_probs=78.8
Q ss_pred CCCCCEEEeeCCCCCcc--ccccccCCCCcCEEeccCc--CCCCC----CccccCCcCCceeeccCCCCCCCccCccccc
Q 012173 62 LKSPKTLNLSGCCKLEN--VPDTLGQVESLEELDISET--AVRRP----PSSIFLMKNLRTLSLFGCNGPPSWHLHLPFN 133 (469)
Q Consensus 62 L~sL~~L~Ls~c~~l~~--lp~~l~~l~~L~~L~L~~~--~i~~l----p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 133 (469)
++.|+.|.+.+|..+.. +-......+.|+.|+++++ .+... ......+.+|+.|++..+....+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~------ 260 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG------ 260 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh------
Confidence 45666666666665554 3334455666666666652 11111 1122335666666666655322111
Q ss_pred ccCCccccccccCCCC-CCCCCCCEEEccCCC-CCCCCCCCCCCCCCCCcEEEcCCCCCc---ccCccccCCCCcCEEec
Q 012173 134 LMGKSSCLVALMLPSL-SGLRSLTKLDLSDCG-LGEGAIPSDIGNLHSLNELYLSKNNFV---TLPASINSLLNLKELEM 208 (469)
Q Consensus 134 ~~~~~~~~~~~~~~~l-~~l~~L~~L~Ls~~~-l~~~~~p~~l~~l~~L~~L~L~~n~l~---~lp~~i~~l~~L~~L~L 208 (469)
...+ ..+++|+.|.+..|. +++..+-.....+++|++|+|++|... .+......+++|+.|.+
T Consensus 261 ------------l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 261 ------------LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred ------------HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 1111 125677777766665 454445555556677777777766543 23333344555555444
Q ss_pred cCCc---ccCcC-----CCCC-CCccEEEecCCCCCcccc
Q 012173 209 EDCK---RLQSL-----PQLP-PNIIFVKVNGCSSLVTLL 239 (469)
Q Consensus 209 ~~c~---~L~~l-----p~lp-~~L~~L~i~~C~~L~~l~ 239 (469)
..+. .++.+ .... ..+..+.+.+|+.++.+.
T Consensus 329 ~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~ 368 (482)
T KOG1947|consen 329 LSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLS 368 (482)
T ss_pred hhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhh
Confidence 3332 23221 1112 145555555666555543
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.98 E-value=0.0038 Score=57.67 Aligned_cols=84 Identities=25% Similarity=0.311 Sum_probs=46.3
Q ss_pred CCCcEEeeeccCCcccCcccCCCCCCCEEeccCC--CCCcccCccCCCCCCCCEEEeeCCCCC--ccccccccCCCCcCE
Q 012173 16 KDLSELNLDGTSITEVPSSIELLPGLELLNLNDC--KNLARVPSSINGLKSPKTLNLSGCCKL--ENVPDTLGQVESLEE 91 (469)
Q Consensus 16 ~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c--~~l~~lp~~i~~L~sL~~L~Ls~c~~l--~~lp~~l~~l~~L~~ 91 (469)
.+|+.|.+.+..++.+-. +-.|++|+.|.++.| .....++....++++|++|++++|..- .++ ..+..+++|..
T Consensus 43 ~~le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhhcchhh
Confidence 344555555444443322 344667777777776 433444444555677777777775332 122 22445666777
Q ss_pred EeccCcCCCC
Q 012173 92 LDISETAVRR 101 (469)
Q Consensus 92 L~L~~~~i~~ 101 (469)
|++..|..+.
T Consensus 121 Ldl~n~~~~~ 130 (260)
T KOG2739|consen 121 LDLFNCSVTN 130 (260)
T ss_pred hhcccCCccc
Confidence 7777665554
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.69 E-value=0.0045 Score=34.47 Aligned_cols=20 Identities=40% Similarity=0.737 Sum_probs=10.8
Q ss_pred CCcEEeeeccCCcccCcccC
Q 012173 17 DLSELNLDGTSITEVPSSIE 36 (469)
Q Consensus 17 ~L~~L~L~~~~l~~lp~~i~ 36 (469)
+|++|+|++|+|+.+|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35555555555555555444
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.84 E-value=0.011 Score=32.88 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=12.1
Q ss_pred CCcEEEcCCCCCcccCcccc
Q 012173 179 SLNELYLSKNNFVTLPASIN 198 (469)
Q Consensus 179 ~L~~L~L~~n~l~~lp~~i~ 198 (469)
+|++|+|++|+++.+|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35666666666666665543
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.46 E-value=0.0012 Score=61.40 Aligned_cols=80 Identities=24% Similarity=0.351 Sum_probs=53.6
Q ss_pred CCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccc--cccCCCCcCEE
Q 012173 15 MKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPD--TLGQVESLEEL 92 (469)
Q Consensus 15 l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~--~l~~l~~L~~L 92 (469)
+.+.++|++.||.|..+.- ..+++.|++|.|+-|+ +..+.. +..+++|++|+|..| .+..+.+ -+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHHH-HHhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 5567788888888876643 4678888888888766 445443 566777888877764 3344332 25567777777
Q ss_pred eccCcC
Q 012173 93 DISETA 98 (469)
Q Consensus 93 ~L~~~~ 98 (469)
.|..|.
T Consensus 94 WL~ENP 99 (388)
T KOG2123|consen 94 WLDENP 99 (388)
T ss_pred hhccCC
Confidence 777663
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.43 E-value=0.13 Score=42.63 Aligned_cols=106 Identities=15% Similarity=0.299 Sum_probs=58.3
Q ss_pred ccch-hcCCCCCCcEEeeeccCCcccCc-ccCCCCCCCEEeccCCCCCcccCc-cCCCCCCCCEEEeeCCCCCccccc-c
Q 012173 7 KFPQ-IVTTMKDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNLARVPS-SINGLKSPKTLNLSGCCKLENVPD-T 82 (469)
Q Consensus 7 ~lp~-~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~-~i~~L~sL~~L~Ls~c~~l~~lp~-~ 82 (469)
++++ .+..+.+|+.+.+.. .+..++. .+..+++|+.+.+.+. +..++. .+.++.+|+.+.+.+ .+..++. .
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~ 76 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNA 76 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTT
T ss_pred EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--ccccccccc
Confidence 3444 466788999999875 5666743 5788889999999873 666554 366677899999965 4444544 3
Q ss_pred ccCCCCcCEEeccCcCCCCCCcc-ccCCcCCceeeccC
Q 012173 83 LGQVESLEELDISETAVRRPPSS-IFLMKNLRTLSLFG 119 (469)
Q Consensus 83 l~~l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~l~~ 119 (469)
+..+++|+.+.+..+ +..++.. +.+. +|+.+.+..
T Consensus 77 F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 77 FSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 556889999998765 5555433 3344 777777654
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.80 E-value=0.04 Score=28.48 Aligned_cols=16 Identities=44% Similarity=0.677 Sum_probs=5.7
Q ss_pred CCcEEEcCCCCCcccC
Q 012173 179 SLNELYLSKNNFVTLP 194 (469)
Q Consensus 179 ~L~~L~L~~n~l~~lp 194 (469)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3445555555444443
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.60 E-value=0.045 Score=28.26 Aligned_cols=16 Identities=31% Similarity=0.671 Sum_probs=6.5
Q ss_pred CCcEEeeeccCCcccC
Q 012173 17 DLSELNLDGTSITEVP 32 (469)
Q Consensus 17 ~L~~L~L~~~~l~~lp 32 (469)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555443
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.29 E-value=0.0053 Score=57.23 Aligned_cols=80 Identities=21% Similarity=0.209 Sum_probs=61.0
Q ss_pred cCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCc--cCCCCCCCCEEEeeCCCCCccccc-----ccc
Q 012173 12 VTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPS--SINGLKSPKTLNLSGCCKLENVPD-----TLG 84 (469)
Q Consensus 12 ~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~--~i~~L~sL~~L~Ls~c~~l~~lp~-----~l~ 84 (469)
..+|+.|++|.|+-|+|+.+.. +..+++|++|.|+.|. +..+.. -+.+|++|++|-|..|.-.+.-+. .+.
T Consensus 37 c~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 3579999999999999998865 8999999999999865 444432 256889999999988766554443 244
Q ss_pred CCCCcCEEe
Q 012173 85 QVESLEELD 93 (469)
Q Consensus 85 ~l~~L~~L~ 93 (469)
-|++|+.||
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 577777775
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.91 E-value=1.1 Score=36.90 Aligned_cols=93 Identities=14% Similarity=0.336 Sum_probs=52.3
Q ss_pred CcCcccch-hcCCCCCCcEEeeeccCCcccCc-ccCCCCCCCEEeccCCCCCcccCcc-CCCCCCCCEEEeeCCCCCccc
Q 012173 3 LQLKKFPQ-IVTTMKDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNLARVPSS-INGLKSPKTLNLSGCCKLENV 79 (469)
Q Consensus 3 ~~L~~lp~-~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~-i~~L~sL~~L~Ls~c~~l~~l 79 (469)
+.++++++ .+..+++|+.+.+..+ +..++. .+..+++|+.+.+.+ .+..++.. +..+++|+.+.+.. .+..+
T Consensus 21 ~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i 95 (129)
T PF13306_consen 21 NTIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPS--NITEI 95 (129)
T ss_dssp ST--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETT--T-BEE
T ss_pred CCeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccccccccccCc--cccEE
Confidence 35566665 4667889999999874 776644 468888999999975 35555544 55689999999975 35555
Q ss_pred cc-cccCCCCcCEEeccCcCCCCC
Q 012173 80 PD-TLGQVESLEELDISETAVRRP 102 (469)
Q Consensus 80 p~-~l~~l~~L~~L~L~~~~i~~l 102 (469)
+. .+.+. +|+.+.+.. .+..+
T Consensus 96 ~~~~f~~~-~l~~i~~~~-~~~~i 117 (129)
T PF13306_consen 96 GSSSFSNC-NLKEINIPS-NITKI 117 (129)
T ss_dssp HTTTTTT--T--EEE-TT-B-SS-
T ss_pred chhhhcCC-CceEEEECC-CccEE
Confidence 44 35565 888888765 34444
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.51 E-value=0.39 Score=27.60 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=15.3
Q ss_pred CCCCcEEEcCCCCCcccCccc
Q 012173 177 LHSLNELYLSKNNFVTLPASI 197 (469)
Q Consensus 177 l~~L~~L~L~~n~l~~lp~~i 197 (469)
+++|+.|+|++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356788888888888777643
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.51 E-value=0.39 Score=27.60 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=15.3
Q ss_pred CCCCcEEEcCCCCCcccCccc
Q 012173 177 LHSLNELYLSKNNFVTLPASI 197 (469)
Q Consensus 177 l~~L~~L~L~~n~l~~lp~~i 197 (469)
+++|+.|+|++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356788888888888777643
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.40 E-value=0.49 Score=27.17 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=14.9
Q ss_pred CCCcCEEeccCcCCCCCCccc
Q 012173 86 VESLEELDISETAVRRPPSSI 106 (469)
Q Consensus 86 l~~L~~L~L~~~~i~~lp~~l 106 (469)
|++|+.|++++|.++.+|..+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 456777778777777777654
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.40 E-value=0.49 Score=27.17 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=14.9
Q ss_pred CCCcCEEeccCcCCCCCCccc
Q 012173 86 VESLEELDISETAVRRPPSSI 106 (469)
Q Consensus 86 l~~L~~L~L~~~~i~~lp~~l 106 (469)
|++|+.|++++|.++.+|..+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 456777778777777777654
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.04 E-value=0.11 Score=46.39 Aligned_cols=77 Identities=21% Similarity=0.318 Sum_probs=35.7
Q ss_pred CcEEeeeccCCccc-CcccCCCCCCCEEeccCCCCCcc--cCccCCCCCCCCEEEeeCCCCCcccc-ccccCCCCcCEEe
Q 012173 18 LSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNLAR--VPSSINGLKSPKTLNLSGCCKLENVP-DTLGQVESLEELD 93 (469)
Q Consensus 18 L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~l~~--lp~~i~~L~sL~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~ 93 (469)
++.++-+++.|... -..+.+++.++.|.+.+|+.+.. +..--+-.++|+.|++++|..++.-. ..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 34455555544421 22355566666666666665432 11100123566666666665554321 2234444444444
Q ss_pred c
Q 012173 94 I 94 (469)
Q Consensus 94 L 94 (469)
+
T Consensus 183 l 183 (221)
T KOG3864|consen 183 L 183 (221)
T ss_pred h
Confidence 4
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=83.72 E-value=0.0035 Score=64.58 Aligned_cols=180 Identities=26% Similarity=0.311 Sum_probs=90.2
Q ss_pred CcEEeeeccCCc-----ccCcccCCCCCCCEEeccCCCCCcc----cCccCCCC-CCCCEEEeeCCCCCc----cccccc
Q 012173 18 LSELNLDGTSIT-----EVPSSIELLPGLELLNLNDCKNLAR----VPSSINGL-KSPKTLNLSGCCKLE----NVPDTL 83 (469)
Q Consensus 18 L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~L~~c~~l~~----lp~~i~~L-~sL~~L~Ls~c~~l~----~lp~~l 83 (469)
+..|.|.+|.+. .+...+...+.|+.|++++|..... +-..+... ..|++|++..|.... .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 555666666554 2344556667777777777653311 11112222 455666666654432 234445
Q ss_pred cCCCCcCEEeccCcCCCC-----CCcccc----CCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCC
Q 012173 84 GQVESLEELDISETAVRR-----PPSSIF----LMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRS 154 (469)
Q Consensus 84 ~~l~~L~~L~L~~~~i~~-----lp~~l~----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 154 (469)
.....++.++++.|.+.. ++..+. ...++++|.+.+|...... ...+...+...++
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~---------------c~~l~~~l~~~~~ 233 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSS---------------CALLDEVLASGES 233 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHH---------------HHHHHHHHhccch
Confidence 556667777777776541 122222 3556666666666532110 0001112223333
Q ss_pred -CCEEEccCCCCCCC---CCCCCCCCC-CCCcEEEcCCCCCc-----ccCccccCCCCcCEEeccCCc
Q 012173 155 -LTKLDLSDCGLGEG---AIPSDIGNL-HSLNELYLSKNNFV-----TLPASINSLLNLKELEMEDCK 212 (469)
Q Consensus 155 -L~~L~Ls~~~l~~~---~~p~~l~~l-~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~c~ 212 (469)
+.+|++..|.+.+. .+...+..+ ..++.++++.|.++ .+...+..++.++.|.+..++
T Consensus 234 ~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 234 LLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred hhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 55566666665321 111223333 45567777777665 344455556666777666654
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.21 E-value=0.11 Score=46.40 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=22.0
Q ss_pred CCcCEEeccCcCCCCC-CccccCCcCCceeeccCCCCCCC
Q 012173 87 ESLEELDISETAVRRP-PSSIFLMKNLRTLSLFGCNGPPS 125 (469)
Q Consensus 87 ~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~l~~~~~~~~ 125 (469)
..++.++.+++.|... ...+..+++++.|.+.+|....+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD 140 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDD 140 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhh
Confidence 3456666666655421 23344566666677777665444
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=82.10 E-value=0.0097 Score=61.36 Aligned_cols=167 Identities=26% Similarity=0.314 Sum_probs=111.3
Q ss_pred hhcCCCCCCcEEeeeccCCcc-----cCcccCCC-CCCCEEeccCCCCCc----ccCccCCCCCCCCEEEeeCCCCCc--
Q 012173 10 QIVTTMKDLSELNLDGTSITE-----VPSSIELL-PGLELLNLNDCKNLA----RVPSSINGLKSPKTLNLSGCCKLE-- 77 (469)
Q Consensus 10 ~~~~~l~~L~~L~L~~~~l~~-----lp~~i~~l-~~L~~L~L~~c~~l~----~lp~~i~~L~sL~~L~Ls~c~~l~-- 77 (469)
..+...++|..|++++|.+.. +-..+... ..|++|++..|.... .+...+.....|+.++++.|....
T Consensus 109 ~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g 188 (478)
T KOG4308|consen 109 QALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELG 188 (478)
T ss_pred HHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhh
Confidence 456678899999999998872 23334444 677888888876443 344556667889999999876642
Q ss_pred --ccccccc----CCCCcCEEeccCcCCCCC-----CccccCCcC-CceeeccCCCCCCCccCcccccccCCcccccccc
Q 012173 78 --NVPDTLG----QVESLEELDISETAVRRP-----PSSIFLMKN-LRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALM 145 (469)
Q Consensus 78 --~lp~~l~----~l~~L~~L~L~~~~i~~l-----p~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (469)
.++..+. ...++++|.+.+|.++.. -..+...+. +..|++..|..... ....+
T Consensus 189 ~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~---------------g~~~L 253 (478)
T KOG4308|consen 189 LLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV---------------GVEKL 253 (478)
T ss_pred hHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH---------------HHHHH
Confidence 1233333 478899999999987732 223334444 66688877653211 12233
Q ss_pred CCCCCCC-CCCCEEEccCCCCCCCC---CCCCCCCCCCCcEEEcCCCCCc
Q 012173 146 LPSLSGL-RSLTKLDLSDCGLGEGA---IPSDIGNLHSLNELYLSKNNFV 191 (469)
Q Consensus 146 ~~~l~~l-~~L~~L~Ls~~~l~~~~---~p~~l~~l~~L~~L~L~~n~l~ 191 (469)
.+.+..+ ..+++++++.|.+.+.. +...+..++.++.|.++.|.+.
T Consensus 254 ~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 254 LPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 4555556 78899999999986432 2334566779999999999876
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.00 E-value=0.03 Score=51.03 Aligned_cols=85 Identities=14% Similarity=0.121 Sum_probs=61.7
Q ss_pred cCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEeccCcCCCCCCccccCCcCCce
Q 012173 35 IELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSIFLMKNLRT 114 (469)
Q Consensus 35 i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~ 114 (469)
|......+.||++.+. +..+-..+..++.|..|+++. +.+..+|...+.+..++.+++..|..+..|.+.+.++.+++
T Consensus 38 i~~~kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhH-HHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence 4556677777777755 555555566677777778776 45667777777777788888888888888888888888888
Q ss_pred eeccCCC
Q 012173 115 LSLFGCN 121 (469)
Q Consensus 115 L~l~~~~ 121 (469)
+++.++.
T Consensus 116 ~e~k~~~ 122 (326)
T KOG0473|consen 116 NEQKKTE 122 (326)
T ss_pred hhhccCc
Confidence 8777765
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.11 E-value=1.5 Score=25.40 Aligned_cols=18 Identities=44% Similarity=0.676 Sum_probs=13.6
Q ss_pred CCCcEEEcCCCCCcccCc
Q 012173 178 HSLNELYLSKNNFVTLPA 195 (469)
Q Consensus 178 ~~L~~L~L~~n~l~~lp~ 195 (469)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 457788888888887775
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=74.04 E-value=0.09 Score=48.01 Aligned_cols=94 Identities=13% Similarity=0.214 Sum_probs=75.3
Q ss_pred Ccccch-hcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccc
Q 012173 5 LKKFPQ-IVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTL 83 (469)
Q Consensus 5 L~~lp~-~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l 83 (469)
+.++|- .+......+.||++.+++..+-..++.+..|..|+++.+. +.-+|..++.+..++.+++.. +.....|...
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHK-NNHSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhc-cchhhCCccc
Confidence 344552 2445677888999999888887778889999999999755 778888888888888888876 4677889999
Q ss_pred cCCCCcCEEeccCcCCC
Q 012173 84 GQVESLEELDISETAVR 100 (469)
Q Consensus 84 ~~l~~L~~L~L~~~~i~ 100 (469)
+..+.++++++.+|.+.
T Consensus 108 ~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cccCCcchhhhccCcch
Confidence 99999999999888654
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=72.64 E-value=2.5 Score=24.23 Aligned_cols=14 Identities=36% Similarity=0.864 Sum_probs=7.6
Q ss_pred CCcCEEeccCCccc
Q 012173 201 LNLKELEMEDCKRL 214 (469)
Q Consensus 201 ~~L~~L~L~~c~~L 214 (469)
++|++|+|++|+.+
T Consensus 2 ~~L~~L~l~~C~~i 15 (26)
T smart00367 2 PNLRELDLSGCTNI 15 (26)
T ss_pred CCCCEeCCCCCCCc
Confidence 45555555555544
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=63.45 E-value=5.6 Score=23.01 Aligned_cols=16 Identities=31% Similarity=0.601 Sum_probs=9.7
Q ss_pred CCCcEEeeeccCCccc
Q 012173 16 KDLSELNLDGTSITEV 31 (469)
Q Consensus 16 ~~L~~L~L~~~~l~~l 31 (469)
.+|+.|+|+.|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666666543
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=58.83 E-value=5.4 Score=22.20 Aligned_cols=14 Identities=36% Similarity=0.437 Sum_probs=6.6
Q ss_pred CCCcEEEcCCCCCc
Q 012173 178 HSLNELYLSKNNFV 191 (469)
Q Consensus 178 ~~L~~L~L~~n~l~ 191 (469)
++|+.|+|++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45566666665543
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=48.15 E-value=26 Score=36.50 Aligned_cols=84 Identities=21% Similarity=0.190 Sum_probs=52.5
Q ss_pred CCCCCCCCEEEccCCCCCCC-CCCCCCCCCCCCcEEEcCCC--CCcccCcccc--CCCCcCEEeccCCcccCcCC-----
Q 012173 149 LSGLRSLTKLDLSDCGLGEG-AIPSDIGNLHSLNELYLSKN--NFVTLPASIN--SLLNLKELEMEDCKRLQSLP----- 218 (469)
Q Consensus 149 l~~l~~L~~L~Ls~~~l~~~-~~p~~l~~l~~L~~L~L~~n--~l~~lp~~i~--~l~~L~~L~L~~c~~L~~lp----- 218 (469)
-.+.+.+..+.|++|++..- .+...-...|+|+.|+|++| .+.+.+ ++. ....|++|.+.+++-.+...
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~tf~~~s~y 292 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTTFSDRSEY 292 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccchhhhHHH
Confidence 34567888999999987431 12222344689999999999 443332 222 34578899999987665443
Q ss_pred -----CCCCCccEEEecCCC
Q 012173 219 -----QLPPNIIFVKVNGCS 233 (469)
Q Consensus 219 -----~lp~~L~~L~i~~C~ 233 (469)
+..|.|..|+-....
T Consensus 293 v~~i~~~FPKL~~LDG~ev~ 312 (585)
T KOG3763|consen 293 VSAIRELFPKLLRLDGVEVQ 312 (585)
T ss_pred HHHHHHhcchheeecCcccC
Confidence 345666666544433
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=42.67 E-value=21 Score=20.82 Aligned_cols=14 Identities=50% Similarity=0.489 Sum_probs=9.3
Q ss_pred CCCcEEEcCCCCCc
Q 012173 178 HSLNELYLSKNNFV 191 (469)
Q Consensus 178 ~~L~~L~L~~n~l~ 191 (469)
++|+.|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777664
No 91
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=26.03 E-value=1.1e+02 Score=19.89 Aligned_cols=13 Identities=15% Similarity=0.209 Sum_probs=8.2
Q ss_pred CCCCCccEEEecC
Q 012173 219 QLPPNIIFVKVNG 231 (469)
Q Consensus 219 ~lp~~L~~L~i~~ 231 (469)
.+|++++.|.+..
T Consensus 31 ~lP~sl~~L~fg~ 43 (44)
T PF05725_consen 31 SLPNSLKSLSFGY 43 (44)
T ss_pred ccCCCceEEEeeC
Confidence 4567777776643
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=23.13 E-value=35 Score=35.54 Aligned_cols=17 Identities=24% Similarity=0.743 Sum_probs=13.3
Q ss_pred CcCCCceeeEEEEEEEe
Q 012173 315 LYNMNKIVGYAICCVFH 331 (469)
Q Consensus 315 ~~~~~~~~gfa~c~v~~ 331 (469)
|+...+.+||++--+|.
T Consensus 440 ~~~~~~~l~ftv~G~f~ 456 (585)
T KOG3763|consen 440 WYQTGNLLGFTVAGVFR 456 (585)
T ss_pred eecccceEEEEEEEEee
Confidence 66567889999888883
Done!