Query 012173
Match_columns 469
No_of_seqs 433 out of 3398
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 04:12:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012173.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012173hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 3E-25 1E-29 217.6 14.5 195 3-219 91-295 (328)
2 4fcg_A Uncharacterized protein 99.9 8.3E-23 2.8E-27 200.2 17.2 189 2-211 113-311 (328)
3 1ogq_A PGIP-2, polygalacturona 99.9 3E-22 1E-26 195.0 12.8 185 7-212 67-255 (313)
4 1ogq_A PGIP-2, polygalacturona 99.9 2.9E-22 9.9E-27 195.1 11.8 212 3-236 87-305 (313)
5 4eco_A Uncharacterized protein 99.9 3.1E-22 1.1E-26 213.5 11.7 235 2-240 192-474 (636)
6 4ecn_A Leucine-rich repeat pro 99.9 8.1E-22 2.8E-26 215.2 14.8 207 3-232 435-683 (876)
7 1ozn_A Reticulon 4 receptor; N 99.9 3E-20 1E-24 178.1 22.8 208 3-233 21-236 (285)
8 1ozn_A Reticulon 4 receptor; N 99.9 2.1E-20 7.1E-25 179.3 20.3 192 2-213 41-237 (285)
9 3rgz_A Protein brassinosteroid 99.9 5.8E-21 2E-25 208.1 18.0 231 8-239 434-721 (768)
10 2z66_A Variable lymphocyte rec 99.9 1.2E-20 4.1E-25 182.8 17.8 228 2-233 16-259 (306)
11 3o6n_A APL1; leucine-rich repe 99.8 5.7E-20 2E-24 184.3 20.2 232 3-239 55-334 (390)
12 2xwt_C Thyrotropin receptor; s 99.8 3.9E-20 1.3E-24 172.7 17.1 207 4-235 22-239 (239)
13 2z66_A Variable lymphocyte rec 99.8 1.8E-20 6.2E-25 181.5 15.3 212 18-233 9-234 (306)
14 1xku_A Decorin; proteoglycan, 99.8 2.4E-19 8.4E-24 175.5 22.6 221 3-232 41-273 (330)
15 3rgz_A Protein brassinosteroid 99.8 3.2E-20 1.1E-24 202.2 18.0 225 15-240 393-698 (768)
16 3oja_B Anopheles plasmodium-re 99.8 1.1E-19 3.6E-24 192.6 20.2 231 3-238 61-339 (597)
17 3zyi_A Leucine-rich repeat-con 99.8 2.5E-19 8.7E-24 183.2 22.3 212 3-239 64-282 (452)
18 3v47_A TOLL-like receptor 5B a 99.8 3.4E-19 1.2E-23 182.1 22.5 119 3-121 40-165 (455)
19 4eco_A Uncharacterized protein 99.8 5.2E-20 1.8E-24 196.3 16.8 233 2-240 314-583 (636)
20 3o6n_A APL1; leucine-rich repe 99.8 9E-20 3.1E-24 182.8 17.5 224 14-242 43-314 (390)
21 2ft3_A Biglycan; proteoglycan, 99.8 5.6E-19 1.9E-23 173.1 22.5 116 2-122 42-159 (332)
22 2o6q_A Variable lymphocyte rec 99.8 5.2E-19 1.8E-23 168.2 21.6 191 17-232 17-215 (270)
23 2z62_A TOLL-like receptor 4, v 99.8 1.1E-19 3.7E-24 173.4 16.7 208 2-231 16-233 (276)
24 4ecn_A Leucine-rich repeat pro 99.8 1.7E-19 5.9E-24 196.9 20.3 232 4-241 559-824 (876)
25 4fmz_A Internalin; leucine ric 99.8 4.6E-19 1.6E-23 174.6 20.9 223 3-238 54-280 (347)
26 3zyj_A Leucine-rich repeat-con 99.8 7.4E-19 2.5E-23 179.1 22.1 207 2-232 52-265 (440)
27 2ft3_A Biglycan; proteoglycan, 99.8 1E-18 3.4E-23 171.3 22.2 101 17-121 34-134 (332)
28 3zyj_A Leucine-rich repeat-con 99.8 4.9E-19 1.7E-23 180.5 20.6 207 2-232 73-289 (440)
29 1xku_A Decorin; proteoglycan, 99.8 9.4E-19 3.2E-23 171.3 21.6 214 17-240 32-257 (330)
30 1p9a_G Platelet glycoprotein I 99.8 7E-19 2.4E-23 169.2 20.3 196 12-232 6-205 (290)
31 2z80_A TOLL-like receptor 2, v 99.8 1.8E-19 6.1E-24 178.2 15.8 189 2-212 40-233 (353)
32 3oja_B Anopheles plasmodium-re 99.8 2E-19 6.8E-24 190.5 16.8 221 15-240 50-318 (597)
33 3g06_A SSPH2 (leucine-rich rep 99.8 4.7E-18 1.6E-22 179.6 26.9 215 2-242 49-280 (622)
34 3t6q_A CD180 antigen; protein- 99.8 7.8E-19 2.7E-23 186.1 21.1 191 3-212 264-460 (606)
35 3zyi_A Leucine-rich repeat-con 99.8 6.1E-19 2.1E-23 180.4 19.4 206 2-232 84-300 (452)
36 1p9a_G Platelet glycoprotein I 99.8 2.2E-18 7.7E-23 165.7 21.6 185 2-212 19-206 (290)
37 2id5_A Lingo-1, leucine rich r 99.8 1.1E-18 3.7E-23 179.7 20.6 119 2-121 41-163 (477)
38 2id5_A Lingo-1, leucine rich r 99.8 6.2E-19 2.1E-23 181.5 18.8 208 2-232 20-234 (477)
39 2z62_A TOLL-like receptor 4, v 99.8 5.9E-19 2E-23 168.3 17.1 190 2-212 37-235 (276)
40 3v47_A TOLL-like receptor 5B a 99.8 1E-18 3.4E-23 178.6 20.0 232 7-240 69-388 (455)
41 3vq2_A TLR4, TOLL-like recepto 99.8 5.9E-19 2E-23 187.1 17.1 223 3-232 317-555 (606)
42 3rfs_A Internalin B, repeat mo 99.8 2.4E-18 8.2E-23 163.8 19.6 178 13-213 38-217 (272)
43 3vq2_A TLR4, TOLL-like recepto 99.8 3.1E-19 1.1E-23 189.2 14.7 186 9-214 369-558 (606)
44 3t6q_A CD180 antigen; protein- 99.8 2.7E-18 9.4E-23 181.9 21.9 211 2-232 287-510 (606)
45 2z7x_B TOLL-like receptor 1, v 99.8 1.3E-18 4.5E-23 181.0 18.6 227 2-233 30-410 (520)
46 2o6q_A Variable lymphocyte rec 99.8 1E-17 3.5E-22 159.3 23.1 188 2-212 25-216 (270)
47 2z7x_B TOLL-like receptor 1, v 99.8 2.1E-18 7.3E-23 179.4 20.0 115 2-121 9-126 (520)
48 1h6u_A Internalin H; cell adhe 99.8 1.4E-18 4.9E-23 168.5 17.2 187 14-232 39-227 (308)
49 4fmz_A Internalin; leucine ric 99.8 3.9E-18 1.3E-22 167.9 20.4 220 2-233 75-298 (347)
50 1wwl_A Monocyte differentiatio 99.8 3.3E-19 1.1E-23 173.3 12.4 197 14-232 93-306 (312)
51 1h6u_A Internalin H; cell adhe 99.8 1.3E-18 4.5E-23 168.8 16.4 178 3-212 51-228 (308)
52 2z81_A CD282 antigen, TOLL-lik 99.8 1.2E-18 4.1E-23 182.4 17.0 210 2-232 14-233 (549)
53 3bz5_A Internalin-J, INLJ; leu 99.8 3.3E-18 1.1E-22 175.1 19.5 173 3-194 74-249 (457)
54 2z80_A TOLL-like receptor 2, v 99.8 2.3E-19 8E-24 177.4 10.6 208 2-233 61-312 (353)
55 3bz5_A Internalin-J, INLJ; leu 99.8 1.5E-17 5.3E-22 170.1 24.5 191 3-212 52-244 (457)
56 3rfs_A Internalin B, repeat mo 99.8 3.3E-18 1.1E-22 162.8 16.8 190 3-220 51-241 (272)
57 1wwl_A Monocyte differentiatio 99.8 7.1E-19 2.4E-23 171.0 12.2 212 7-240 56-291 (312)
58 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 7.6E-18 2.6E-22 177.0 20.8 83 150-233 350-439 (562)
59 4ay9_X Follicle-stimulating ho 99.8 7.8E-18 2.7E-22 166.3 19.4 215 2-239 18-240 (350)
60 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.4E-17 8.2E-22 173.2 23.2 115 2-121 40-157 (562)
61 3m19_A Variable lymphocyte rec 99.8 1.7E-17 5.7E-22 156.0 19.6 175 16-212 14-190 (251)
62 3o53_A Protein LRIM1, AGAP0063 99.8 2.6E-18 8.8E-23 167.4 14.4 210 11-233 29-248 (317)
63 2xwt_C Thyrotropin receptor; s 99.8 4.8E-18 1.7E-22 158.4 15.2 187 2-213 40-238 (239)
64 3j0a_A TOLL-like receptor 5; m 99.8 2.4E-17 8.4E-22 181.3 22.8 118 4-121 35-159 (844)
65 2z63_A TOLL-like receptor 4, v 99.8 4.5E-18 1.6E-22 178.7 15.4 202 9-212 275-505 (570)
66 1jl5_A Outer protein YOPM; leu 99.8 5.9E-18 2E-22 173.0 15.4 221 3-238 21-272 (454)
67 1jl5_A Outer protein YOPM; leu 99.8 7.3E-17 2.5E-21 164.9 22.6 177 39-232 131-307 (454)
68 3oja_A Leucine-rich immune mol 99.7 9.5E-18 3.3E-22 173.1 15.5 206 15-233 33-248 (487)
69 3m19_A Variable lymphocyte rec 99.7 4.8E-17 1.6E-21 152.9 18.9 170 2-193 23-194 (251)
70 1o6v_A Internalin A; bacterial 99.7 3.8E-17 1.3E-21 167.7 19.5 218 3-232 78-319 (466)
71 2z81_A CD282 antigen, TOLL-lik 99.7 7.7E-18 2.6E-22 176.2 14.5 107 3-109 60-171 (549)
72 1ziw_A TOLL-like receptor 3; i 99.7 4.6E-17 1.6E-21 174.9 20.8 207 3-211 35-306 (680)
73 1ziw_A TOLL-like receptor 3; i 99.7 5.8E-17 2E-21 174.1 21.4 197 16-232 381-594 (680)
74 1o6v_A Internalin A; bacterial 99.7 4.9E-17 1.7E-21 166.9 19.7 225 2-239 55-303 (466)
75 1h6t_A Internalin B; cell adhe 99.7 3E-17 1E-21 157.9 15.5 170 13-213 43-212 (291)
76 4glp_A Monocyte differentiatio 99.7 1.4E-17 4.7E-22 161.7 12.9 197 15-232 90-304 (310)
77 4glp_A Monocyte differentiatio 99.7 9E-18 3.1E-22 163.0 11.6 203 16-238 64-287 (310)
78 3g06_A SSPH2 (leucine-rich rep 99.7 2.3E-16 7.9E-21 166.6 23.1 206 2-233 70-295 (622)
79 2z63_A TOLL-like receptor 4, v 99.7 4.7E-17 1.6E-21 170.9 17.7 118 3-121 38-160 (570)
80 3j0a_A TOLL-like receptor 5; m 99.7 4.1E-17 1.4E-21 179.5 17.9 189 2-212 13-215 (844)
81 2ast_B S-phase kinase-associat 99.7 4.7E-19 1.6E-23 173.7 -0.3 205 10-232 62-282 (336)
82 3o53_A Protein LRIM1, AGAP0063 99.7 4.7E-17 1.6E-21 158.4 12.3 201 2-214 43-250 (317)
83 2ast_B S-phase kinase-associat 99.7 8.9E-19 3E-23 171.7 -0.0 199 17-235 48-260 (336)
84 3oja_A Leucine-rich immune mol 99.7 6.2E-17 2.1E-21 167.0 13.0 201 2-214 43-250 (487)
85 1m9s_A Internalin B; cell inva 99.7 1.6E-16 5.6E-21 167.5 16.4 178 5-214 33-210 (605)
86 4ezg_A Putative uncharacterize 99.7 6.4E-17 2.2E-21 146.3 11.5 105 14-121 42-147 (197)
87 3cvr_A Invasion plasmid antige 99.7 2.4E-16 8.1E-21 164.7 17.2 175 17-212 60-241 (571)
88 2o6s_A Variable lymphocyte rec 99.7 5.1E-16 1.7E-20 141.4 13.3 171 19-219 10-183 (208)
89 1h6t_A Internalin B; cell adhe 99.7 6.6E-16 2.3E-20 148.4 14.1 163 2-195 55-217 (291)
90 4g8a_A TOLL-like receptor 4; l 99.7 5.3E-16 1.8E-20 164.6 14.4 186 3-211 41-234 (635)
91 1xeu_A Internalin C; cellular 99.7 1.3E-16 4.4E-21 151.1 8.3 168 14-213 17-184 (263)
92 3cvr_A Invasion plasmid antige 99.6 4.5E-15 1.6E-19 155.0 19.6 160 40-242 60-226 (571)
93 1m9s_A Internalin B; cell inva 99.6 1.5E-16 5.1E-21 167.8 8.2 187 15-233 20-208 (605)
94 4ezg_A Putative uncharacterize 99.6 6.1E-16 2.1E-20 139.8 10.8 151 35-212 40-192 (197)
95 2o6s_A Variable lymphocyte rec 99.6 4.8E-15 1.6E-19 134.9 16.2 169 3-202 17-190 (208)
96 2ca6_A RAN GTPase-activating p 99.6 1.7E-17 5.9E-22 166.0 -0.6 214 5-233 21-285 (386)
97 1xeu_A Internalin C; cellular 99.6 1.1E-15 3.6E-20 144.8 11.6 162 2-195 28-189 (263)
98 2v9t_B SLIT homolog 2 protein 99.6 7.5E-15 2.6E-19 135.0 16.8 100 19-121 14-115 (220)
99 3e6j_A Variable lymphocyte rec 99.6 1.1E-14 3.8E-19 134.8 17.0 147 19-212 22-170 (229)
100 2ca6_A RAN GTPase-activating p 99.6 2.7E-17 9.2E-22 164.6 -0.9 212 8-233 52-314 (386)
101 2v70_A SLIT-2, SLIT homolog 2 99.6 1.1E-14 3.9E-19 133.8 16.3 100 19-121 14-116 (220)
102 2xot_A Amphoterin-induced prot 99.6 5.5E-15 1.9E-19 146.4 15.1 170 19-212 21-200 (361)
103 1dce_A Protein (RAB geranylger 99.6 4.1E-18 1.4E-22 178.6 -8.5 176 13-213 346-545 (567)
104 4ay9_X Follicle-stimulating ho 99.6 1.9E-14 6.5E-19 141.9 17.3 198 19-240 12-219 (350)
105 3e6j_A Variable lymphocyte rec 99.6 1.8E-14 6.3E-19 133.3 15.8 116 2-121 28-146 (229)
106 2v9t_B SLIT homolog 2 protein 99.6 2.5E-14 8.6E-19 131.5 15.4 143 2-191 20-165 (220)
107 2v70_A SLIT-2, SLIT homolog 2 99.6 2.2E-14 7.5E-19 131.9 14.9 144 2-191 20-166 (220)
108 4g8a_A TOLL-like receptor 4; l 99.6 7E-14 2.4E-18 148.2 19.6 200 14-233 369-578 (635)
109 2xot_A Amphoterin-induced prot 99.5 1E-14 3.5E-19 144.5 10.5 164 2-191 27-202 (361)
110 3goz_A Leucine-rich repeat-con 99.5 2.9E-16 9.9E-21 155.7 -0.9 214 3-233 8-264 (362)
111 2ell_A Acidic leucine-rich nuc 99.5 3.1E-14 1.1E-18 124.9 11.2 105 14-120 22-130 (168)
112 1dce_A Protein (RAB geranylger 99.5 7.4E-17 2.5E-21 169.0 -6.8 181 3-208 359-567 (567)
113 1z7x_W Ribonuclease inhibitor; 99.5 7.6E-16 2.6E-20 157.4 -3.7 85 149-233 223-324 (461)
114 4b8c_D Glucose-repressible alc 99.5 1.6E-14 5.6E-19 155.8 5.1 156 15-193 172-331 (727)
115 2ell_A Acidic leucine-rich nuc 99.5 1E-13 3.6E-18 121.5 8.4 132 36-212 21-158 (168)
116 4b8c_D Glucose-repressible alc 99.5 7.4E-15 2.5E-19 158.5 1.2 157 26-211 211-369 (727)
117 2je0_A Acidic leucine-rich nuc 99.5 9.5E-14 3.3E-18 119.2 7.9 106 14-121 15-124 (149)
118 3goz_A Leucine-rich repeat-con 99.5 1.8E-15 6.1E-20 150.0 -4.0 195 3-212 32-264 (362)
119 1w8a_A SLIT protein; signaling 99.4 7.1E-13 2.4E-17 119.1 13.0 127 19-191 11-139 (192)
120 2je0_A Acidic leucine-rich nuc 99.4 6.9E-14 2.4E-18 120.1 5.1 128 38-210 16-149 (149)
121 2wfh_A SLIT homolog 2 protein 99.4 1E-12 3.6E-17 118.1 12.4 118 2-121 19-137 (193)
122 1w8a_A SLIT protein; signaling 99.4 1.2E-12 4E-17 117.6 11.3 118 2-121 17-137 (192)
123 2wfh_A SLIT homolog 2 protein 99.4 3.3E-12 1.1E-16 114.8 13.7 57 43-103 14-70 (193)
124 1z7x_W Ribonuclease inhibitor; 99.4 1.2E-14 3.9E-19 148.6 -3.0 210 8-232 162-408 (461)
125 1a9n_A U2A', U2A'; complex (nu 99.3 1.3E-12 4.3E-17 115.6 8.1 105 13-121 16-124 (176)
126 2o6r_A Variable lymphocyte rec 99.3 3.1E-11 1.1E-15 106.6 15.7 79 18-100 9-89 (177)
127 2o6r_A Variable lymphocyte rec 99.3 2.5E-11 8.6E-16 107.2 13.3 116 2-121 16-135 (177)
128 1a9n_A U2A', U2A'; complex (nu 99.3 4E-12 1.4E-16 112.4 7.8 117 2-121 28-151 (176)
129 3ogk_B Coronatine-insensitive 99.3 4.2E-13 1.4E-17 141.4 1.7 216 14-231 110-351 (592)
130 3ogk_B Coronatine-insensitive 99.2 6.4E-13 2.2E-17 140.0 0.2 113 8-121 184-304 (592)
131 1ds9_A Outer arm dynein; leuci 99.2 5.4E-14 1.8E-18 127.0 -8.1 114 4-121 36-151 (198)
132 2p1m_B Transport inhibitor res 99.2 3E-13 1E-17 142.5 -4.9 37 175-211 286-324 (594)
133 2p1m_B Transport inhibitor res 99.2 2.5E-13 8.5E-18 143.2 -6.0 196 14-210 128-347 (594)
134 2r9u_A Variable lymphocyte rec 99.1 2.8E-10 9.7E-15 100.3 11.7 101 18-121 14-116 (174)
135 1ds9_A Outer arm dynein; leuci 99.1 1.4E-13 4.7E-18 124.3 -10.0 88 28-119 37-124 (198)
136 3g39_A Variable lymphocyte rec 99.1 2.8E-10 9.6E-15 99.9 11.6 102 17-121 10-113 (170)
137 2r9u_A Variable lymphocyte rec 99.1 3.4E-10 1.2E-14 99.8 10.1 103 2-108 21-126 (174)
138 3g39_A Variable lymphocyte rec 99.1 7.8E-10 2.7E-14 97.0 11.3 99 2-104 18-119 (170)
139 3sb4_A Hypothetical leucine ri 99.0 1.1E-09 3.7E-14 106.7 11.5 192 15-238 48-326 (329)
140 2ifg_A High affinity nerve gro 98.9 5.1E-09 1.7E-13 102.6 11.0 101 20-121 12-114 (347)
141 2ifg_A High affinity nerve gro 98.9 5.6E-09 1.9E-13 102.3 10.5 98 3-102 19-118 (347)
142 3sb4_A Hypothetical leucine ri 98.9 5.6E-09 1.9E-13 101.6 9.3 207 15-229 24-304 (329)
143 4fdw_A Leucine rich hypothetic 98.8 2.4E-07 8.2E-12 92.6 18.6 202 2-232 143-355 (401)
144 3un9_A NLR family member X1; l 98.8 6.6E-11 2.3E-15 117.4 -7.4 61 151-211 181-249 (372)
145 4fdw_A Leucine rich hypothetic 98.8 3.2E-07 1.1E-11 91.7 19.0 186 1-218 120-315 (401)
146 3un9_A NLR family member X1; l 98.7 2.9E-10 9.9E-15 112.7 -6.6 163 15-192 71-253 (372)
147 2ra8_A Uncharacterized protein 98.6 4E-09 1.4E-13 103.9 0.6 166 31-212 131-318 (362)
148 2ra8_A Uncharacterized protein 98.5 1.9E-08 6.6E-13 99.0 2.3 153 58-232 134-317 (362)
149 1io0_A Tropomodulin; LRR prote 98.0 1.1E-06 3.7E-11 77.9 1.6 112 10-121 30-162 (185)
150 3e4g_A ATP synthase subunit S, 97.9 5.8E-06 2E-10 72.0 4.0 85 40-124 62-153 (176)
151 1io0_A Tropomodulin; LRR prote 97.9 7.6E-07 2.6E-11 78.9 -2.2 59 153-211 93-161 (185)
152 4fs7_A Uncharacterized protein 97.9 0.00025 8.4E-09 70.4 15.8 81 148-240 292-373 (394)
153 4gt6_A Cell surface protein; l 97.9 0.00037 1.3E-08 69.0 16.5 61 147-210 259-320 (394)
154 3e4g_A ATP synthase subunit S, 97.8 1E-05 3.4E-10 70.5 3.9 95 7-101 52-154 (176)
155 4fs7_A Uncharacterized protein 97.7 0.001 3.5E-08 65.9 16.0 58 11-71 157-216 (394)
156 3rw6_A Nuclear RNA export fact 97.6 2.8E-05 9.7E-10 72.6 3.5 95 21-117 148-258 (267)
157 3rw6_A Nuclear RNA export fact 97.2 0.00018 6.3E-09 67.1 4.2 68 150-218 167-237 (267)
158 4gt6_A Cell surface protein; l 97.2 0.011 3.8E-07 58.3 17.4 59 148-209 283-342 (394)
159 4h09_A Hypothetical leucine ri 96.6 0.11 3.6E-06 50.7 18.3 83 147-240 257-340 (379)
160 4h09_A Hypothetical leucine ri 96.3 0.058 2E-06 52.6 14.2 179 4-208 145-340 (379)
161 1pgv_A TMD-1, tropomodulin TMD 95.0 0.006 2.1E-07 53.9 1.1 14 197-210 153-166 (197)
162 3rfe_A Platelet glycoprotein I 94.8 0.024 8.3E-07 46.4 4.2 52 20-74 12-66 (130)
163 3rfe_A Platelet glycoprotein I 94.8 0.065 2.2E-06 43.8 6.7 55 156-212 11-66 (130)
164 1pgv_A TMD-1, tropomodulin TMD 94.0 0.017 5.7E-07 51.0 1.7 108 13-120 38-167 (197)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=3e-25 Score=217.65 Aligned_cols=195 Identities=28% Similarity=0.514 Sum_probs=117.9
Q ss_pred CcCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccccc
Q 012173 3 LQLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDT 82 (469)
Q Consensus 3 ~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~ 82 (469)
++++.+|..++++++|++|+|++|.++.+|..++.+++|++|+|++|. +..+|..+.++++|++|++++|..++.+|..
T Consensus 91 n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~ 169 (328)
T 4fcg_A 91 VPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEP 169 (328)
T ss_dssp SCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEEEEETTCCCCCSC
T ss_pred CCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEECCCCCCccccChh
Confidence 445566665555666666666666666666666666666666666654 3356666666666666666666666666655
Q ss_pred ccC---------CCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCC
Q 012173 83 LGQ---------VESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLR 153 (469)
Q Consensus 83 l~~---------l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 153 (469)
++. +++|++|++++|.+..+|..++.+++|++|++++|... .+++.+..++
T Consensus 170 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~--------------------~l~~~l~~l~ 229 (328)
T 4fcg_A 170 LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS--------------------ALGPAIHHLP 229 (328)
T ss_dssp SEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC--------------------CCCGGGGGCT
T ss_pred HhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC--------------------cCchhhccCC
Confidence 443 66666666666666666666666666666666665411 1234455566
Q ss_pred CCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCc-ccCccccCCCCcCEEeccCCcccCcCCC
Q 012173 154 SLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASINSLLNLKELEMEDCKRLQSLPQ 219 (469)
Q Consensus 154 ~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 219 (469)
+|++|++++|++. +.+|..++.+++|+.|+|++|++. .+|..+..+++|+.|+|++|+.++.+|.
T Consensus 230 ~L~~L~Ls~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 230 KLEELDLRGCTAL-RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp TCCEEECTTCTTC-CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred CCCEEECcCCcch-hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 6666666666554 455666666666666666665444 4555666666666666666666655553
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=8.3e-23 Score=200.25 Aligned_cols=189 Identities=24% Similarity=0.386 Sum_probs=172.5
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCC---------CCCCCEEEeeC
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSING---------LKSPKTLNLSG 72 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~---------L~sL~~L~Ls~ 72 (469)
.++++.+|..++.+++|++|+|++|.++.+|..++.+++|++|++++|..+..+|..+.. +++|++|++++
T Consensus 113 ~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~ 192 (328)
T 4fcg_A 113 AAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192 (328)
T ss_dssp SSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEE
T ss_pred CCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcC
Confidence 467889999899999999999999999999999999999999999999999999988765 99999999999
Q ss_pred CCCCccccccccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCC
Q 012173 73 CCKLENVPDTLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGL 152 (469)
Q Consensus 73 c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 152 (469)
| .+..+|..++.+++|++|++++|.+..+|..+..+++|++|++++|.. .+.+|..++.+
T Consensus 193 n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~-------------------~~~~p~~~~~l 252 (328)
T 4fcg_A 193 T-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA-------------------LRNYPPIFGGR 252 (328)
T ss_dssp E-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTT-------------------CCBCCCCTTCC
T ss_pred C-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcc-------------------hhhhHHHhcCC
Confidence 7 556999999999999999999999999999999999999999999873 23447788999
Q ss_pred CCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCc-ccCccccCCCCcCEEeccCC
Q 012173 153 RSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASINSLLNLKELEMEDC 211 (469)
Q Consensus 153 ~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c 211 (469)
++|+.|++++|++. +.+|..++.+++|+.|+|++|++. .+|..+..+++|+.+++...
T Consensus 253 ~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 253 APLKRLILKDCSNL-LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCCEEECTTCTTC-CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCCEEECCCCCch-hhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 99999999999886 789999999999999999998766 79999999999999998864
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=3e-22 Score=195.01 Aligned_cols=185 Identities=18% Similarity=0.271 Sum_probs=106.9
Q ss_pred ccchhcCCCCCCcEEeeec-cCCc-ccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccccccc
Q 012173 7 KFPQIVTTMKDLSELNLDG-TSIT-EVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLG 84 (469)
Q Consensus 7 ~lp~~~~~l~~L~~L~L~~-~~l~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~ 84 (469)
.+|..++++++|++|+|++ +.+. .+|..++.+++|++|+|++|.....+|..+.++++|++|++++|...+.+|..++
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence 4666666677777777764 5555 5566667777777777776664446666666677777777776655556666666
Q ss_pred CCCCcCEEeccCcCCC-CCCccccCCc-CCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccC
Q 012173 85 QVESLEELDISETAVR-RPPSSIFLMK-NLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSD 162 (469)
Q Consensus 85 ~l~~L~~L~L~~~~i~-~lp~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~ 162 (469)
.+++|++|++++|.+. .+|..++.++ +|++|++++|.. .+..+..+..++ |+.|++++
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l-------------------~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL-------------------TGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE-------------------EEECCGGGGGCC-CSEEECCS
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee-------------------eccCChHHhCCc-ccEEECcC
Confidence 6777777777777666 5666666666 677777766541 122233333333 44555544
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCc
Q 012173 163 CGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 212 (469)
Q Consensus 163 ~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 212 (469)
|.+. +..|..+..+++|+.|+|++|.++..+..+..+++|++|++++|.
T Consensus 207 N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 207 NMLE-GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR 255 (313)
T ss_dssp SEEE-ECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSC
T ss_pred Cccc-CcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCc
Confidence 4443 233444444445555555555444333334444445555554443
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=2.9e-22 Score=195.10 Aligned_cols=212 Identities=19% Similarity=0.240 Sum_probs=179.7
Q ss_pred CcCc-ccchhcCCCCCCcEEeeeccCCc-ccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccc
Q 012173 3 LQLK-KFPQIVTTMKDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVP 80 (469)
Q Consensus 3 ~~L~-~lp~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp 80 (469)
+++. .+|..++++++|++|+|++|.+. .+|..++.+++|++|+|++|.....+|..+.++++|++|++++|...+.+|
T Consensus 87 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 166 (313)
T 1ogq_A 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166 (313)
T ss_dssp TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred CcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC
Confidence 4454 78888999999999999999998 789999999999999999998666899999999999999999987766899
Q ss_pred ccccCCC-CcCEEeccCcCCC-CCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEE
Q 012173 81 DTLGQVE-SLEELDISETAVR-RPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKL 158 (469)
Q Consensus 81 ~~l~~l~-~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 158 (469)
..++.+. +|++|++++|.+. .+|..+..++ |++|++++|. +.+..+..+..+++|+.|
T Consensus 167 ~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~-------------------l~~~~~~~~~~l~~L~~L 226 (313)
T 1ogq_A 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM-------------------LEGDASVLFGSDKNTQKI 226 (313)
T ss_dssp GGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE-------------------EEECCGGGCCTTSCCSEE
T ss_pred HHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc-------------------ccCcCCHHHhcCCCCCEE
Confidence 9999998 9999999999998 6788888887 9999999876 233446778899999999
Q ss_pred EccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCc-ccCccccCCCCcCEEeccCCcccCcCCCCC--CCccEEEecCCCCC
Q 012173 159 DLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASINSLLNLKELEMEDCKRLQSLPQLP--PNIIFVKVNGCSSL 235 (469)
Q Consensus 159 ~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp--~~L~~L~i~~C~~L 235 (469)
++++|.+. +.+| .+..+++|++|+|++|.++ .+|..+..+++|+.|++++|+....+|... ++|+.+++.+.+.+
T Consensus 227 ~L~~N~l~-~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 227 HLAKNSLA-FDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp ECCSSEEC-CBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred ECCCCcee-eecC-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 99999985 3344 4888999999999999999 789999999999999999998766777652 34555555555444
Q ss_pred c
Q 012173 236 V 236 (469)
Q Consensus 236 ~ 236 (469)
.
T Consensus 305 c 305 (313)
T 1ogq_A 305 C 305 (313)
T ss_dssp E
T ss_pred c
Confidence 3
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=3.1e-22 Score=213.52 Aligned_cols=235 Identities=13% Similarity=0.217 Sum_probs=176.2
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcc------------------cCcccC--CCCCCCEEeccCCCCCcccCccCCC
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITE------------------VPSSIE--LLPGLELLNLNDCKNLARVPSSING 61 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~------------------lp~~i~--~l~~L~~L~L~~c~~l~~lp~~i~~ 61 (469)
.++++.+|+.++++++|++|+|++|.++. +|..++ ++++|++|+|++|.....+|..+++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 35777899999999999999999999998 999999 9999999999999989999999999
Q ss_pred CCCCCEEEeeCCC-CCc-cccccccCC------CCcCEEeccCcCCCCCCc--cccCCcCCceeeccCCCCCCCc-cC--
Q 012173 62 LKSPKTLNLSGCC-KLE-NVPDTLGQV------ESLEELDISETAVRRPPS--SIFLMKNLRTLSLFGCNGPPSW-HL-- 128 (469)
Q Consensus 62 L~sL~~L~Ls~c~-~l~-~lp~~l~~l------~~L~~L~L~~~~i~~lp~--~l~~l~~L~~L~l~~~~~~~~~-~~-- 128 (469)
+++|++|++++|. ..+ .+|..++.+ ++|++|++++|.+..+|. .++.+++|++|++++|...... .+
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~ 351 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGS 351 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEE
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCC
Confidence 9999999999987 444 699888877 999999999999999999 9999999999999998632111 11
Q ss_pred cccccccCCccccccccCCCCCCCCC-CCEEEccCCCCCCCCCCCCCCCCC--CCcEEEcCCCCCcc-cCcccc------
Q 012173 129 HLPFNLMGKSSCLVALMLPSLSGLRS-LTKLDLSDCGLGEGAIPSDIGNLH--SLNELYLSKNNFVT-LPASIN------ 198 (469)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~Ls~~~l~~~~~p~~l~~l~--~L~~L~L~~n~l~~-lp~~i~------ 198 (469)
...+..+....+....+|..+..+++ |+.|++++|.+. .+|..+..++ +|+.|++++|.++. +|..+.
T Consensus 352 l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 352 EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK--YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp EEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS--SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred CCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc--ccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 11122233333334456666777777 777777777774 4676666544 67777777777763 455555
Q ss_pred -CCCCcCEEeccCCcccCcCCC----CCCCccEEEecCCCCCccccc
Q 012173 199 -SLLNLKELEMEDCKRLQSLPQ----LPPNIIFVKVNGCSSLVTLLG 240 (469)
Q Consensus 199 -~l~~L~~L~L~~c~~L~~lp~----lp~~L~~L~i~~C~~L~~l~~ 240 (469)
.+++|+.|++++|. +..+|. ..++|+.|++.++. ++.++.
T Consensus 430 ~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~ 474 (636)
T 4eco_A 430 FKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNM-LTEIPK 474 (636)
T ss_dssp CCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSC-CSBCCS
T ss_pred ccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCC-CCCcCH
Confidence 56677777777764 334553 13567777777653 334443
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=8.1e-22 Score=215.21 Aligned_cols=207 Identities=15% Similarity=0.188 Sum_probs=168.6
Q ss_pred CcCcccchhcCCCCCCcEEeeeccCCcc------------------cCcccC--CCCCCCEEeccCCCCCcccCccCCCC
Q 012173 3 LQLKKFPQIVTTMKDLSELNLDGTSITE------------------VPSSIE--LLPGLELLNLNDCKNLARVPSSINGL 62 (469)
Q Consensus 3 ~~L~~lp~~~~~l~~L~~L~L~~~~l~~------------------lp~~i~--~l~~L~~L~L~~c~~l~~lp~~i~~L 62 (469)
|+++.+|..++++++|++|+|++|.++. +|..++ .+++|++|+|++|.....+|..++++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 5677799999999999999999999998 999988 99999999999999899999999999
Q ss_pred CCCCEEEeeCCCCCc--cccccccCCC-------CcCEEeccCcCCCCCCc--cccCCcCCceeeccCCCCCCCccCccc
Q 012173 63 KSPKTLNLSGCCKLE--NVPDTLGQVE-------SLEELDISETAVRRPPS--SIFLMKNLRTLSLFGCNGPPSWHLHLP 131 (469)
Q Consensus 63 ~sL~~L~Ls~c~~l~--~lp~~l~~l~-------~L~~L~L~~~~i~~lp~--~l~~l~~L~~L~l~~~~~~~~~~~~~~ 131 (469)
++|++|++++|..+. .+|..+++++ +|++|++++|.+..+|. .++.+++|+.|++++|...
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-------- 586 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-------- 586 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC--------
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc--------
Confidence 999999999987344 5888777665 99999999999999999 9999999999999988722
Q ss_pred ccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCCCCCCCCCCCC-CcEEEcCCCCCcccCccccCCCC--cCEEec
Q 012173 132 FNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHS-LNELYLSKNNFVTLPASINSLLN--LKELEM 208 (469)
Q Consensus 132 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~-L~~L~L~~n~l~~lp~~i~~l~~--L~~L~L 208 (469)
.+| .++.+++|+.|++++|.+. .+|..+..+++ |+.|+|++|.++.+|..+..++. |+.|++
T Consensus 587 ------------~lp-~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~L 651 (876)
T 4ecn_A 587 ------------HLE-AFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDF 651 (876)
T ss_dssp ------------BCC-CCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEEC
T ss_pred ------------cch-hhcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEEC
Confidence 223 6677777888888877774 47777777777 88888888877777776665543 777777
Q ss_pred cCCcccCcCCCCC--------CCccEEEecCC
Q 012173 209 EDCKRLQSLPQLP--------PNIIFVKVNGC 232 (469)
Q Consensus 209 ~~c~~L~~lp~lp--------~~L~~L~i~~C 232 (469)
++|.....+|.++ ++|+.|++++|
T Consensus 652 s~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N 683 (876)
T 4ecn_A 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683 (876)
T ss_dssp CSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS
T ss_pred cCCcCCCccccchhhhccccCCCcCEEEccCC
Confidence 7776555555444 35677777665
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=3e-20 Score=178.14 Aligned_cols=208 Identities=23% Similarity=0.282 Sum_probs=168.1
Q ss_pred CcCcccchhcCCCCCCcEEeeeccCCcccC-cccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccc-c
Q 012173 3 LQLKKFPQIVTTMKDLSELNLDGTSITEVP-SSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENV-P 80 (469)
Q Consensus 3 ~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~l-p 80 (469)
+.++.+|..+ .++|++|+|+++.++.++ ..++.+++|++|++++|......|..+.++++|++|++++|..++.+ |
T Consensus 21 ~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 21 QGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp SCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred CCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH
Confidence 5678888765 479999999999999886 46899999999999998754445778999999999999998756666 6
Q ss_pred ccccCCCCcCEEeccCcCCCCC-CccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEE
Q 012173 81 DTLGQVESLEELDISETAVRRP-PSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLD 159 (469)
Q Consensus 81 ~~l~~l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 159 (469)
..+..+++|++|++++|.+..+ |..+..+++|++|++++|... ...+..+..+++|+.|+
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------------------~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-------------------ALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------CCCTTTTTTCTTCCEEE
T ss_pred HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-------------------ccCHhHhccCCCccEEE
Confidence 7889999999999999999987 566888999999999988621 11234578899999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCccc-CccccCCCCcCEEeccCCcccCcCCC----CCCCccEEEecCCC
Q 012173 160 LSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL-PASINSLLNLKELEMEDCKRLQSLPQ----LPPNIIFVKVNGCS 233 (469)
Q Consensus 160 Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~----lp~~L~~L~i~~C~ 233 (469)
+++|.+. ...+..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|. +..++. -.++|+.|++.+++
T Consensus 160 l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 160 LHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CCCCccc-ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCC
Confidence 9999985 23334588899999999999999976 7788999999999999984 444431 13566677666543
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=2.1e-20 Score=179.27 Aligned_cols=192 Identities=26% Similarity=0.365 Sum_probs=165.2
Q ss_pred CCcCcccch-hcCCCCCCcEEeeeccCCccc-CcccCCCCCCCEEeccCCCCCccc-CccCCCCCCCCEEEeeCCCCCcc
Q 012173 2 RLQLKKFPQ-IVTTMKDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNLARV-PSSINGLKSPKTLNLSGCCKLEN 78 (469)
Q Consensus 2 ~~~L~~lp~-~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~l~~l-p~~i~~L~sL~~L~Ls~c~~l~~ 78 (469)
.++++.+|. .++.+++|++|+|++|.++.+ |..++.+++|++|++++|..+..+ |..+..+++|++|++++|.....
T Consensus 41 ~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 120 (285)
T 1ozn_A 41 GNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120 (285)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred CCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEE
Confidence 356777774 678899999999999999987 778999999999999999867666 67789999999999999876666
Q ss_pred ccccccCCCCcCEEeccCcCCCCCCcc-ccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCE
Q 012173 79 VPDTLGQVESLEELDISETAVRRPPSS-IFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTK 157 (469)
Q Consensus 79 lp~~l~~l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 157 (469)
.|..++.+++|++|++++|.+..++.. +..+++|++|++++|.. ....+..+..+++|+.
T Consensus 121 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-------------------~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-------------------SSVPERAFRGLHSLDR 181 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-------------------CEECTTTTTTCTTCCE
T ss_pred CHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc-------------------cccCHHHhcCccccCE
Confidence 677889999999999999999988764 78899999999998862 1122345788999999
Q ss_pred EEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCc-cccCCCCcCEEeccCCcc
Q 012173 158 LDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCKR 213 (469)
Q Consensus 158 L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~ 213 (469)
|++++|.+. +..|..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|+.
T Consensus 182 L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 182 LLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp EECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred EECCCCccc-ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 999999986 4568889999999999999999998886 488999999999999853
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=5.8e-21 Score=208.09 Aligned_cols=231 Identities=21% Similarity=0.245 Sum_probs=147.9
Q ss_pred cchhcCCCCCCcEEeeeccCCc-ccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCC
Q 012173 8 FPQIVTTMKDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQV 86 (469)
Q Consensus 8 lp~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l 86 (469)
+|..++.+++|++|++++|.+. .+|..++.+++|++|++++|.....+|..+.++++|++|++++|...+.+|..++.+
T Consensus 434 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l 513 (768)
T 3rgz_A 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcC
Confidence 3444444555555555555444 344455555555555555555444555555555555556665555555555555556
Q ss_pred CCcCEEeccCcCCC-CCCccccCCcCCceeeccCCCCCCCcc--Ccc-----cccc------------------------
Q 012173 87 ESLEELDISETAVR-RPPSSIFLMKNLRTLSLFGCNGPPSWH--LHL-----PFNL------------------------ 134 (469)
Q Consensus 87 ~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~l~~~~~~~~~~--~~~-----~~~~------------------------ 134 (469)
++|++|++++|.+. .+|..++.+++|+.|++++|......+ ... ....
T Consensus 514 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (768)
T 3rgz_A 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593 (768)
T ss_dssp TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccc
Confidence 66666666666555 455556666666666666553110000 000 0000
Q ss_pred -------------------c-CCccccccccCCCCCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCc-cc
Q 012173 135 -------------------M-GKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TL 193 (469)
Q Consensus 135 -------------------~-~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~-~l 193 (469)
. ...+...+..+..++.+++|+.|++++|+++ +.+|..++.+++|+.|+|++|.++ .+
T Consensus 594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~i 672 (768)
T 3rgz_A 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS-GYIPKEIGSMPYLFILNLGHNDISGSI 672 (768)
T ss_dssp EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB-SCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred cccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc-ccCCHHHhccccCCEEeCcCCccCCCC
Confidence 0 0012334556778888999999999999997 789999999999999999999999 79
Q ss_pred CccccCCCCcCEEeccCCcccCcCCCC---CCCccEEEecCCCCCcccc
Q 012173 194 PASINSLLNLKELEMEDCKRLQSLPQL---PPNIIFVKVNGCSSLVTLL 239 (469)
Q Consensus 194 p~~i~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~i~~C~~L~~l~ 239 (469)
|..++.+++|+.|+|++|+....+|.. .++|+.|+++++.--..+|
T Consensus 673 p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred ChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 999999999999999999877788754 3678888988875433343
No 10
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=1.2e-20 Score=182.76 Aligned_cols=228 Identities=22% Similarity=0.292 Sum_probs=161.4
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccCcc-cCCCCCCCEEeccCCCCCc--ccCccCCCCCCCCEEEeeCCCCCcc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNLA--RVPSSINGLKSPKTLNLSGCCKLEN 78 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~l~--~lp~~i~~L~sL~~L~Ls~c~~l~~ 78 (469)
.+.++.+|..+. ++|++|+|++|.++.+|.. ++.+++|++|+|++|.... ..|..+..+++|++|++++| .+..
T Consensus 16 ~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~ 92 (306)
T 2z66_A 16 SKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVIT 92 (306)
T ss_dssp SSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEE
T ss_pred CCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-cccc
Confidence 356888998653 7999999999999999875 6899999999999987331 22556677999999999996 4567
Q ss_pred ccccccCCCCcCEEeccCcCCCCCCc--cccCCcCCceeeccCCCCCCC--ccC--cccccccCCccccc-c-ccCCCCC
Q 012173 79 VPDTLGQVESLEELDISETAVRRPPS--SIFLMKNLRTLSLFGCNGPPS--WHL--HLPFNLMGKSSCLV-A-LMLPSLS 150 (469)
Q Consensus 79 lp~~l~~l~~L~~L~L~~~~i~~lp~--~l~~l~~L~~L~l~~~~~~~~--~~~--~~~~~~~~~~~~~~-~-~~~~~l~ 150 (469)
+|..+..+++|++|++++|.+..++. .+..+++|++|++++|..... ..+ ...+..+....+.. + ..+..+.
T Consensus 93 l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 172 (306)
T 2z66_A 93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 172 (306)
T ss_dssp EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHh
Confidence 88889999999999999999988764 688899999999998863211 001 11122222222222 2 3566677
Q ss_pred CCCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCc-cccCCCCcCEEeccCCcccCcCC----CCCCCcc
Q 012173 151 GLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCKRLQSLP----QLPPNII 225 (469)
Q Consensus 151 ~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp----~lp~~L~ 225 (469)
.+++|+.|++++|.+. +..|..+..+++|+.|+|++|.++.++. .+..+++|+.|++++|+.....| .+|++|+
T Consensus 173 ~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~ 251 (306)
T 2z66_A 173 ELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 251 (306)
T ss_dssp TCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCC
T ss_pred hCcCCCEEECCCCCcC-CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCC
Confidence 7777777777777774 3346667777777777777777776654 55667777777777775443332 3345667
Q ss_pred EEEecCCC
Q 012173 226 FVKVNGCS 233 (469)
Q Consensus 226 ~L~i~~C~ 233 (469)
.|++.+++
T Consensus 252 ~L~L~~N~ 259 (306)
T 2z66_A 252 FLNLTQND 259 (306)
T ss_dssp EEECTTCC
T ss_pred EEEccCCC
Confidence 77666543
No 11
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=5.7e-20 Score=184.26 Aligned_cols=232 Identities=18% Similarity=0.203 Sum_probs=165.3
Q ss_pred CcCcccchh-cCCCCCCcEEeeeccCCcccCc-ccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccc
Q 012173 3 LQLKKFPQI-VTTMKDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVP 80 (469)
Q Consensus 3 ~~L~~lp~~-~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp 80 (469)
+.++.+|.. +..+++|++|+|++|.+..++. .++.+++|++|+|++|......|..+.++++|++|++++| .+..+|
T Consensus 55 ~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~ 133 (390)
T 3o6n_A 55 STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLP 133 (390)
T ss_dssp CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCC
T ss_pred CchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCC
Confidence 456777764 5678888888888888887754 6788888888888887744444555788888888888886 455666
Q ss_pred cc-ccCCCCcCEEeccCcCCCCCC-ccccCCcCCceeeccCCCCCCCc--cCc---------------------------
Q 012173 81 DT-LGQVESLEELDISETAVRRPP-SSIFLMKNLRTLSLFGCNGPPSW--HLH--------------------------- 129 (469)
Q Consensus 81 ~~-l~~l~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~l~~~~~~~~~--~~~--------------------------- 129 (469)
.. ++.+++|++|++++|.+..++ ..+..+++|++|++++|...... .+.
T Consensus 134 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~ 213 (390)
T 3o6n_A 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 213 (390)
T ss_dssp TTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECC
T ss_pred HHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECC
Confidence 55 477888888888888887664 45777888888888877521100 000
Q ss_pred ------------ccccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccc
Q 012173 130 ------------LPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASI 197 (469)
Q Consensus 130 ------------~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i 197 (469)
..+..+....+.... .+.+..+++|++|++++|.+. +..|..+..+++|+.|+|++|.++.+|..+
T Consensus 214 ~n~l~~~~~~~~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 291 (390)
T 3o6n_A 214 HNSINVVRGPVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYG 291 (390)
T ss_dssp SSCCCEEECCCCSSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCC-EEESGGGTTCSSCCEEECCSSCCCEEECSS
T ss_pred CCeeeeccccccccccEEECCCCCCcc-cHHHcCCCCccEEECCCCcCC-CcChhHccccccCCEEECCCCcCcccCccc
Confidence 001111111111111 245778899999999999986 456788999999999999999999999888
Q ss_pred cCCCCcCEEeccCCcccCcCCCC---CCCccEEEecCCCCCcccc
Q 012173 198 NSLLNLKELEMEDCKRLQSLPQL---PPNIIFVKVNGCSSLVTLL 239 (469)
Q Consensus 198 ~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~i~~C~~L~~l~ 239 (469)
..+++|+.|++++|+ +..+|.. .++|+.|++.++. ++.++
T Consensus 292 ~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~-i~~~~ 334 (390)
T 3o6n_A 292 QPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLK 334 (390)
T ss_dssp SCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCC
T ss_pred CCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc-cceeC
Confidence 889999999999984 5555532 2688999998875 44443
No 12
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=3.9e-20 Score=172.67 Aligned_cols=207 Identities=18% Similarity=0.256 Sum_probs=167.6
Q ss_pred cCcccchhcCCCCCCcEEeeeccCCcccCc-ccCCCCCCCEEeccCCCCCcccCc-cCCCCCCCCEEEeeCCCCCcccc-
Q 012173 4 QLKKFPQIVTTMKDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNLARVPS-SINGLKSPKTLNLSGCCKLENVP- 80 (469)
Q Consensus 4 ~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~-~i~~L~sL~~L~Ls~c~~l~~lp- 80 (469)
.++++|. +. ++|++|++++|+++.+|. .++.+++|++|++++|..+..+|. .+.++++|++|++++|+.+..+|
T Consensus 22 ~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 22 DIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp SCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred CccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 3778888 54 589999999999999876 789999999999999876777775 67899999999999966777776
Q ss_pred ccccCCCCcCEEeccCcCCCCCCccccCCcCCc---eeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCC-
Q 012173 81 DTLGQVESLEELDISETAVRRPPSSIFLMKNLR---TLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLT- 156 (469)
Q Consensus 81 ~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~---~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~- 156 (469)
..+..+++|++|++++|.+..+|. +..+++|+ +|++++|..+. ...+..+..+++|+
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~------------------~i~~~~~~~l~~L~~ 159 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMT------------------SIPVNAFQGLCNETL 159 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCC------------------EECTTTTTTTBSSEE
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchh------------------hcCcccccchhccee
Confidence 468899999999999999999987 88888888 99999883221 11234578899999
Q ss_pred EEEccCCCCCCCCCCCCCCCCCCCcEEEcCCC-CCcccCc-cccCC-CCcCEEeccCCcccCcCCC-CCCCccEEEecCC
Q 012173 157 KLDLSDCGLGEGAIPSDIGNLHSLNELYLSKN-NFVTLPA-SINSL-LNLKELEMEDCKRLQSLPQ-LPPNIIFVKVNGC 232 (469)
Q Consensus 157 ~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n-~l~~lp~-~i~~l-~~L~~L~L~~c~~L~~lp~-lp~~L~~L~i~~C 232 (469)
.|++++|.+. .+|......++|+.|+|++| .++.+|. .+..+ ++|+.|++++++ ++.+|. ..++|+.|++.++
T Consensus 160 ~L~l~~n~l~--~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 160 TLKLYNNGFT--SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARNT 236 (239)
T ss_dssp EEECCSCCCC--EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC
T ss_pred EEEcCCCCCc--ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccCc
Confidence 9999999985 46665544589999999999 4998865 56788 999999999964 556664 3578999998887
Q ss_pred CCC
Q 012173 233 SSL 235 (469)
Q Consensus 233 ~~L 235 (469)
..|
T Consensus 237 ~~l 239 (239)
T 2xwt_C 237 WTL 239 (239)
T ss_dssp ---
T ss_pred cCC
Confidence 654
No 13
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=1.8e-20 Score=181.50 Aligned_cols=212 Identities=22% Similarity=0.217 Sum_probs=157.4
Q ss_pred CcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCcc-CCCCCCCCEEEeeCCCCCc--cccccccCCCCcCEEec
Q 012173 18 LSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSS-INGLKSPKTLNLSGCCKLE--NVPDTLGQVESLEELDI 94 (469)
Q Consensus 18 L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~-i~~L~sL~~L~Ls~c~~l~--~lp~~l~~l~~L~~L~L 94 (469)
-+.++.+++.++.+|..+ .++|++|+|++|. +..+|.. +.++++|++|++++|.... ..|..+..+++|++|++
T Consensus 9 ~~~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CCEEEcCCCCcccCCCCC--CCCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 357889999999999755 3799999999987 6677765 6899999999999975432 23566778999999999
Q ss_pred cCcCCCCCCccccCCcCCceeeccCCCCCCCc---cC--cccccccCCccc-cccccCCCCCCCCCCCEEEccCCCCCCC
Q 012173 95 SETAVRRPPSSIFLMKNLRTLSLFGCNGPPSW---HL--HLPFNLMGKSSC-LVALMLPSLSGLRSLTKLDLSDCGLGEG 168 (469)
Q Consensus 95 ~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~---~~--~~~~~~~~~~~~-~~~~~~~~l~~l~~L~~L~Ls~~~l~~~ 168 (469)
++|.+..+|..+..+++|++|++++|...... .+ ...+..+..+.+ .....+..+..+++|++|++++|.+.+.
T Consensus 86 s~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 86 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp CSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 99999999999999999999999988632111 11 111222222222 3334456677888888888888887533
Q ss_pred CCCCCCCCCCCCcEEEcCCCCCccc-CccccCCCCcCEEeccCCcccCcCCCC----CCCccEEEecCCC
Q 012173 169 AIPSDIGNLHSLNELYLSKNNFVTL-PASINSLLNLKELEMEDCKRLQSLPQL----PPNIIFVKVNGCS 233 (469)
Q Consensus 169 ~~p~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~l----p~~L~~L~i~~C~ 233 (469)
.+|..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|. +..++.. .++|+.|+++++.
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCC
Confidence 5778888888888888888888876 5677888888888888875 3344321 3678888888774
No 14
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=2.4e-19 Score=175.51 Aligned_cols=221 Identities=22% Similarity=0.261 Sum_probs=130.4
Q ss_pred CcCcccchhcCCCCCCcEEeeeccCCcccCc-ccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccc
Q 012173 3 LQLKKFPQIVTTMKDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPD 81 (469)
Q Consensus 3 ~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~ 81 (469)
+.++.+|..+. ++|++|+|++|+++.++. .++.+++|++|+|++|......|..+.++++|++|++++| .+..+|.
T Consensus 41 ~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~ 117 (330)
T 1xku_A 41 LGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPE 117 (330)
T ss_dssp SCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCS
T ss_pred CCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccCh
Confidence 45667776553 677778888777777654 5777788888888777644444667777777888888775 3556665
Q ss_pred cccCCCCcCEEeccCcCCCCCCc-cccCCcCCceeeccCCCCCC----CccC--cccccccCCccccccccCCCCCCCCC
Q 012173 82 TLGQVESLEELDISETAVRRPPS-SIFLMKNLRTLSLFGCNGPP----SWHL--HLPFNLMGKSSCLVALMLPSLSGLRS 154 (469)
Q Consensus 82 ~l~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~l~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~ 154 (469)
.+. ++|++|++++|.+..++. .+..+++|+.|++++|.... ...+ ...+..+....+....++..+. ++
T Consensus 118 ~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~ 193 (330)
T 1xku_A 118 KMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PS 193 (330)
T ss_dssp SCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TT
T ss_pred hhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--cc
Confidence 543 567777777776665543 35566667777766654311 0000 0111112222222223333332 56
Q ss_pred CCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCc-cccCCCCcCEEeccCCcccCcCCCC---CCCccEEEec
Q 012173 155 LTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCKRLQSLPQL---PPNIIFVKVN 230 (469)
Q Consensus 155 L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~i~ 230 (469)
|++|++++|.+. +..+..+..+++|+.|+|++|.++.++. .+..+++|+.|++++|+ +..+|.. .++|+.|++.
T Consensus 194 L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 194 LTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp CSEEECTTSCCC-EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECC
T ss_pred CCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECC
Confidence 777777777664 3335566666777777777776665543 55666677777777663 3444432 2456666666
Q ss_pred CC
Q 012173 231 GC 232 (469)
Q Consensus 231 ~C 232 (469)
++
T Consensus 272 ~N 273 (330)
T 1xku_A 272 NN 273 (330)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 15
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.84 E-value=3.2e-20 Score=202.25 Aligned_cols=225 Identities=22% Similarity=0.208 Sum_probs=145.5
Q ss_pred CCCCcEEeeeccCCc-ccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEe
Q 012173 15 MKDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELD 93 (469)
Q Consensus 15 l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 93 (469)
+++|++|++++|.+. .+|..++.+++|++|++++|.....+|..++++++|++|++++|...+.+|..++.+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 556666666666665 4566666666666666666654445566666666666666666655556666666666666666
Q ss_pred ccCcCCC-CCCccccCCcCCceeeccCCCCCCCcc--C--cccccccCCc-cccccccCCCCCCCCCCCEEEccCCCCCC
Q 012173 94 ISETAVR-RPPSSIFLMKNLRTLSLFGCNGPPSWH--L--HLPFNLMGKS-SCLVALMLPSLSGLRSLTKLDLSDCGLGE 167 (469)
Q Consensus 94 L~~~~i~-~lp~~l~~l~~L~~L~l~~~~~~~~~~--~--~~~~~~~~~~-~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~ 167 (469)
+++|.+. .+|..+..+++|++|++++|....... + ...+..+... +.+.+.+|..+..+++|+.|++++|.+.
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~- 551 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN- 551 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE-
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC-
Confidence 6666665 445566666666666666655321110 0 0111112222 2244566778888899999999888664
Q ss_pred CCCC----------------------------------------------------------------------CCCCCC
Q 012173 168 GAIP----------------------------------------------------------------------SDIGNL 177 (469)
Q Consensus 168 ~~~p----------------------------------------------------------------------~~l~~l 177 (469)
+.+| ..++.+
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 3333 234556
Q ss_pred CCCcEEEcCCCCCc-ccCccccCCCCcCEEeccCCcccCcCCCC---CCCccEEEecCCCCCccccc
Q 012173 178 HSLNELYLSKNNFV-TLPASINSLLNLKELEMEDCKRLQSLPQL---PPNIIFVKVNGCSSLVTLLG 240 (469)
Q Consensus 178 ~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~i~~C~~L~~l~~ 240 (469)
++|+.|+|++|+++ .+|..++.++.|+.|+|++|.....+|.- .++|+.|+++++.--..+|.
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence 78999999999998 78889999999999999999877777743 36788888888754434444
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1.1e-19 Score=192.59 Aligned_cols=231 Identities=18% Similarity=0.207 Sum_probs=160.6
Q ss_pred CcCcccchh-cCCCCCCcEEeeeccCCcccCc-ccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccc
Q 012173 3 LQLKKFPQI-VTTMKDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVP 80 (469)
Q Consensus 3 ~~L~~lp~~-~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp 80 (469)
+.+..+|.. ++.+++|++|+|++|.+..++. .++.+++|++|+|++|......|..++++++|++|++++| .+..+|
T Consensus 61 ~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~ 139 (597)
T 3oja_B 61 STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLP 139 (597)
T ss_dssp CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCC
T ss_pred CCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCC
Confidence 445667753 5667888888888888877654 6788888888888887744434445677888888888886 444555
Q ss_pred cc-ccCCCCcCEEeccCcCCCCCCc-cccCCcCCceeeccCCCCCCCc--cCc---------------------------
Q 012173 81 DT-LGQVESLEELDISETAVRRPPS-SIFLMKNLRTLSLFGCNGPPSW--HLH--------------------------- 129 (469)
Q Consensus 81 ~~-l~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~--~~~--------------------------- 129 (469)
.. ++.+++|++|++++|.+..++. .+..+++|++|++++|...... .+.
T Consensus 140 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls 219 (597)
T 3oja_B 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 219 (597)
T ss_dssp TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECC
T ss_pred HHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeecc
Confidence 54 4778888888888887776643 5777788888888776521100 000
Q ss_pred ------------ccccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccc
Q 012173 130 ------------LPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASI 197 (469)
Q Consensus 130 ------------~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i 197 (469)
..+..+....+.... ++.+..+++|+.|++++|.+. +..|..++.+++|+.|+|++|.++.+|..+
T Consensus 220 ~n~l~~~~~~~~~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 297 (597)
T 3oja_B 220 HNSINVVRGPVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYG 297 (597)
T ss_dssp SSCCCEEECSCCSCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCC-EEESGGGTTCSSCCEEECTTSCCCEEECSS
T ss_pred CCcccccccccCCCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccC-CCCHHHhcCccCCCEEECCCCCCCCCCccc
Confidence 001111111111111 356778899999999999986 556888999999999999999999999888
Q ss_pred cCCCCcCEEeccCCcccCcCCCC---CCCccEEEecCCCCCccc
Q 012173 198 NSLLNLKELEMEDCKRLQSLPQL---PPNIIFVKVNGCSSLVTL 238 (469)
Q Consensus 198 ~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~i~~C~~L~~l 238 (469)
..+++|+.|+|++|. +..+|.. .++|+.|++.+|. +..+
T Consensus 298 ~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~-l~~~ 339 (597)
T 3oja_B 298 QPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTL 339 (597)
T ss_dssp SCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCC
T ss_pred ccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCC-CCCc
Confidence 889999999999985 3455532 3688999988875 4444
No 17
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=2.5e-19 Score=183.22 Aligned_cols=212 Identities=24% Similarity=0.294 Sum_probs=153.3
Q ss_pred CcCcccchhcCCCCCCcEEeeeccCCccc-CcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccc-
Q 012173 3 LQLKKFPQIVTTMKDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVP- 80 (469)
Q Consensus 3 ~~L~~lp~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp- 80 (469)
..++.+|..+. ++|++|+|++|+|+.+ +..++.+++|++|+|++|......|..+.++++|++|+|++|. +..+|
T Consensus 64 ~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 140 (452)
T 3zyi_A 64 RGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPS 140 (452)
T ss_dssp SCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCT
T ss_pred CCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccCh
Confidence 56788998664 7999999999999977 6678999999999999987555555778999999999999975 45555
Q ss_pred ccccCCCCcCEEeccCcCCCCCCc-cccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEE
Q 012173 81 DTLGQVESLEELDISETAVRRPPS-SIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLD 159 (469)
Q Consensus 81 ~~l~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 159 (469)
..++.+++|++|++++|.+..+|. .+..+++|+.|++++|..+.... +..+..+++|+.|+
T Consensus 141 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~------------------~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS------------------EGAFEGLFNLKYLN 202 (452)
T ss_dssp TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC------------------TTTTTTCTTCCEEE
T ss_pred hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC------------------hhhccCCCCCCEEE
Confidence 458889999999999999998765 67889999999999876433211 23455667777777
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCccc-CccccCCCCcCEEeccCCcccCcCCCC---CCCccEEEecCCCCC
Q 012173 160 LSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL-PASINSLLNLKELEMEDCKRLQSLPQL---PPNIIFVKVNGCSSL 235 (469)
Q Consensus 160 Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~i~~C~~L 235 (469)
+++|++.. +| .+..+++|+.|+|++|.++.+ |..+..+++|+.|++++|..-...+.. .++|+.|++.++ .+
T Consensus 203 L~~n~l~~--~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l 278 (452)
T 3zyi_A 203 LGMCNIKD--MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NL 278 (452)
T ss_dssp CTTSCCSS--CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred CCCCcccc--cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cC
Confidence 77776642 43 356667777777777777655 445666777777777766433222211 256666666665 34
Q ss_pred cccc
Q 012173 236 VTLL 239 (469)
Q Consensus 236 ~~l~ 239 (469)
+.++
T Consensus 279 ~~~~ 282 (452)
T 3zyi_A 279 SSLP 282 (452)
T ss_dssp SCCC
T ss_pred CccC
Confidence 4443
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=3.4e-19 Score=182.11 Aligned_cols=119 Identities=20% Similarity=0.288 Sum_probs=85.9
Q ss_pred CcCccc-chhcCCCCCCcEEeeeccCCc-cc-CcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccc
Q 012173 3 LQLKKF-PQIVTTMKDLSELNLDGTSIT-EV-PSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENV 79 (469)
Q Consensus 3 ~~L~~l-p~~~~~l~~L~~L~L~~~~l~-~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~l 79 (469)
++++.+ |..++++++|++|+|++|.+. .+ +..++.+++|++|+|++|......|..+.++++|++|++++|...+.+
T Consensus 40 n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 119 (455)
T 3v47_A 40 NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV 119 (455)
T ss_dssp SCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHH
T ss_pred CccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccc
Confidence 455555 556777788888888877765 44 456777888888888887755555777788888888888887655444
Q ss_pred ccc--ccCCCCcCEEeccCcCCCCC-Ccc-ccCCcCCceeeccCCC
Q 012173 80 PDT--LGQVESLEELDISETAVRRP-PSS-IFLMKNLRTLSLFGCN 121 (469)
Q Consensus 80 p~~--l~~l~~L~~L~L~~~~i~~l-p~~-l~~l~~L~~L~l~~~~ 121 (469)
|.. ++.+++|++|++++|.+..+ |.. +..+++|++|++++|.
T Consensus 120 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 120 LSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp HHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred cCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 444 77788888888888888766 444 6778888888887775
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=5.2e-20 Score=196.32 Aligned_cols=233 Identities=18% Similarity=0.216 Sum_probs=137.7
Q ss_pred CCcCcccch--hcCCCCCCcEEeeeccCCc-ccCcccCCCCCCCEEeccCCCCCcccCccCCCCCC-CCEEEeeCCCCCc
Q 012173 2 RLQLKKFPQ--IVTTMKDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNLARVPSSINGLKS-PKTLNLSGCCKLE 77 (469)
Q Consensus 2 ~~~L~~lp~--~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~s-L~~L~Ls~c~~l~ 77 (469)
.++++.+|. .++++++|++|++++|.+. .+| .++.+++|++|++++|. +..+|..+.++++ |++|++++|. +.
T Consensus 314 ~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-l~ 390 (636)
T 4eco_A 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNK-LK 390 (636)
T ss_dssp SSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSC-CS
T ss_pred CCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCc-Cc
Confidence 356778887 7888888888888888888 777 67777888888888776 4477777777777 7777777764 34
Q ss_pred cccccccCCC--CcCEEeccCcCCCC-CCcccc-------CCcCCceeeccCCCCCCCcc--C--cccccccCCcccccc
Q 012173 78 NVPDTLGQVE--SLEELDISETAVRR-PPSSIF-------LMKNLRTLSLFGCNGPPSWH--L--HLPFNLMGKSSCLVA 143 (469)
Q Consensus 78 ~lp~~l~~l~--~L~~L~L~~~~i~~-lp~~l~-------~l~~L~~L~l~~~~~~~~~~--~--~~~~~~~~~~~~~~~ 143 (469)
.+|..++.+. +|++|++++|.+.. .|..+. .+++|++|++++|....... . ...+..+..+.+...
T Consensus 391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 6776665544 67777777766653 344444 55566666666654221000 0 011122222222222
Q ss_pred ccCCCCC--------CCCCCCEEEccCCCCCCCCCCCCCC--CCCCCcEEEcCCCCCcccCccccCCCCcCEEeccC---
Q 012173 144 LMLPSLS--------GLRSLTKLDLSDCGLGEGAIPSDIG--NLHSLNELYLSKNNFVTLPASINSLLNLKELEMED--- 210 (469)
Q Consensus 144 ~~~~~l~--------~l~~L~~L~Ls~~~l~~~~~p~~l~--~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~--- 210 (469)
.++.... .+++|+.|++++|.+. .+|..+. .+++|+.|+|++|.++.+|..+..+++|+.|++++
T Consensus 471 ~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ 548 (636)
T 4eco_A 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLT--KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRD 548 (636)
T ss_dssp BCCSSSSEETTEECTTGGGCCEEECCSSCCC--BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBC
T ss_pred CcCHHHhccccccccccCCccEEECcCCcCC--ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcc
Confidence 3333221 1226666666666664 3666555 66666666666666666666666666666666643
Q ss_pred ---CcccCcCCCC---CCCccEEEecCCCCCccccc
Q 012173 211 ---CKRLQSLPQL---PPNIIFVKVNGCSSLVTLLG 240 (469)
Q Consensus 211 ---c~~L~~lp~l---p~~L~~L~i~~C~~L~~l~~ 240 (469)
|...+.+|.. .++|+.|++++|.- ..++.
T Consensus 549 ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~ 583 (636)
T 4eco_A 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE 583 (636)
T ss_dssp TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred cccCcccccChHHHhcCCCCCEEECCCCcC-CccCH
Confidence 3233344422 24566666665543 44443
No 20
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.83 E-value=9e-20 Score=182.83 Aligned_cols=224 Identities=18% Similarity=0.166 Sum_probs=158.1
Q ss_pred CCCCCcEEeeeccCCcccCcc-cCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEE
Q 012173 14 TMKDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEEL 92 (469)
Q Consensus 14 ~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L 92 (469)
.+++|++|+++++.++.+|.. ++.+++|++|++++|......|..+..+++|++|++++|......|..++.+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 368899999999999988876 5889999999999987443344578889999999999976555556668899999999
Q ss_pred eccCcCCCCCCccc-cCCcCCceeeccCCCCCCCc--cCc--ccccccCCcccccccc----------------------
Q 012173 93 DISETAVRRPPSSI-FLMKNLRTLSLFGCNGPPSW--HLH--LPFNLMGKSSCLVALM---------------------- 145 (469)
Q Consensus 93 ~L~~~~i~~lp~~l-~~l~~L~~L~l~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~---------------------- 145 (469)
++++|.+..+|..+ ..+++|++|++++|...... .+. ..+..+....+.....
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~ 202 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 202 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC
Confidence 99999999888764 78999999999988632111 110 1111111111111000
Q ss_pred -CCCC---------------CCCCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCccc-CccccCCCCcCEEec
Q 012173 146 -LPSL---------------SGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL-PASINSLLNLKELEM 208 (469)
Q Consensus 146 -~~~l---------------~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L 208 (469)
+..+ ...++|+.|++++|.+.+ +..+..+++|+.|+|++|.++.+ |..+..+++|+.|++
T Consensus 203 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~---~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (390)
T 3o6n_A 203 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279 (390)
T ss_dssp CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred CCCcceEEECCCCeeeeccccccccccEEECCCCCCcc---cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEEC
Confidence 0000 112467777777777753 25678889999999999999865 678888999999999
Q ss_pred cCCcccCcCCCC---CCCccEEEecCCCCCcccccch
Q 012173 209 EDCKRLQSLPQL---PPNIIFVKVNGCSSLVTLLGAL 242 (469)
Q Consensus 209 ~~c~~L~~lp~l---p~~L~~L~i~~C~~L~~l~~~~ 242 (469)
++|+ ++.+|.. .++|+.|++++| .++.++...
T Consensus 280 ~~n~-l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~ 314 (390)
T 3o6n_A 280 SNNR-LVALNLYGQPIPTLKVLDLSHN-HLLHVERNQ 314 (390)
T ss_dssp CSSC-CCEEECSSSCCTTCCEEECCSS-CCCCCGGGH
T ss_pred CCCc-CcccCcccCCCCCCCEEECCCC-cceecCccc
Confidence 9974 4444432 478999999888 566666543
No 21
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=5.6e-19 Score=173.11 Aligned_cols=116 Identities=25% Similarity=0.325 Sum_probs=93.3
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccC-cccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVP-SSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVP 80 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp 80 (469)
.+.++++|..+. ++|++|+|++|.++.++ ..++.+++|++|++++|......|..+.++++|++|++++| .+..+|
T Consensus 42 ~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~ 118 (332)
T 2ft3_A 42 DLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIP 118 (332)
T ss_dssp SSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCC
T ss_pred CCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccC
Confidence 356788887663 78999999999998874 47899999999999998754445777888999999999986 456777
Q ss_pred ccccCCCCcCEEeccCcCCCCCCcc-ccCCcCCceeeccCCCC
Q 012173 81 DTLGQVESLEELDISETAVRRPPSS-IFLMKNLRTLSLFGCNG 122 (469)
Q Consensus 81 ~~l~~l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~l~~~~~ 122 (469)
..+. ++|++|++++|.+..+|.. +..+++|++|++++|..
T Consensus 119 ~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 119 PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp SSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred cccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence 7665 7899999999988888654 77888999999888764
No 22
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=5.2e-19 Score=168.22 Aligned_cols=191 Identities=23% Similarity=0.342 Sum_probs=122.4
Q ss_pred CCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccC-ccCCCCCCCCEEEeeCCCCCcccccc-ccCCCCcCEEec
Q 012173 17 DLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVP-SSINGLKSPKTLNLSGCCKLENVPDT-LGQVESLEELDI 94 (469)
Q Consensus 17 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~L~sL~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~L 94 (469)
+++.++++++.++.+|..+. ++|++|+|++|. +..+| ..+.++++|++|++++|. +..+|.. +..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEEC
Confidence 46677777777777776553 567777777766 44444 357777777777777753 4445443 466777777777
Q ss_pred cCcCCCCCCcc-ccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCCCCCC
Q 012173 95 SETAVRRPPSS-IFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSD 173 (469)
Q Consensus 95 ~~~~i~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~ 173 (469)
++|.+..+|.. +..+++|++|++++|... ...+..+..+++|+.|++++|.+.. ..+..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------------------~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~ 152 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLK-------------------SLPPRVFDSLTKLTYLSLGYNELQS-LPKGV 152 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCC-------------------CCCTTTTTTCTTCCEEECCSSCCCC-CCTTT
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccC-------------------eeCHHHhCcCcCCCEEECCCCcCCc-cCHhH
Confidence 77777776543 466777777777776521 1113445677777777777777742 22334
Q ss_pred CCCCCCCcEEEcCCCCCcccCcc-ccCCCCcCEEeccCCcccCcCCC--C--CCCccEEEecCC
Q 012173 174 IGNLHSLNELYLSKNNFVTLPAS-INSLLNLKELEMEDCKRLQSLPQ--L--PPNIIFVKVNGC 232 (469)
Q Consensus 174 l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~~L~~lp~--l--p~~L~~L~i~~C 232 (469)
++.+++|+.|+|++|.++.+|.. +..+++|++|++++| .++.+|. + .++|+.|++.++
T Consensus 153 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCC
Confidence 67777777777777777776653 566777777777776 3444442 1 245566665554
No 23
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=1.1e-19 Score=173.41 Aligned_cols=208 Identities=23% Similarity=0.259 Sum_probs=165.1
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccCc-ccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVP 80 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp 80 (469)
+.++.++|..+. ++|++|+|++|.++.++. .++.+++|++|++++|......+..+.++++|++|++++|......+
T Consensus 16 ~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 16 ELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp TSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh
Confidence 356788898764 689999999999998865 78999999999999987444444578899999999999986555556
Q ss_pred ccccCCCCcCEEeccCcCCCCCCc-cccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEE
Q 012173 81 DTLGQVESLEELDISETAVRRPPS-SIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLD 159 (469)
Q Consensus 81 ~~l~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 159 (469)
..+..+++|++|++++|.+..++. .+..+++|++|++++|.... ..++..+..+++|+.|+
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS------------------FKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC------------------CCCCGGGGGCTTCCEEE
T ss_pred hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce------------------ecCchhhccCCCCCEEE
Confidence 778999999999999999998765 68899999999999886221 01256678889999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCc----EEEcCCCCCcccCccccCCCCcCEEeccCCcccCcCCC-C---CCCccEEEecC
Q 012173 160 LSDCGLGEGAIPSDIGNLHSLN----ELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQSLPQ-L---PPNIIFVKVNG 231 (469)
Q Consensus 160 Ls~~~l~~~~~p~~l~~l~~L~----~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~-l---p~~L~~L~i~~ 231 (469)
+++|.+. +..+..+..+++|+ .|++++|.++.++.......+|+.|++++|. ++.+|. . .++|+.|++.+
T Consensus 156 Ls~N~l~-~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 156 LSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp CCSSCCC-EECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCS
T ss_pred CCCCCCC-cCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccC
Confidence 9999985 33345566666666 8999999999998877777799999999986 555553 1 35666776664
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=1.7e-19 Score=196.88 Aligned_cols=232 Identities=18% Similarity=0.187 Sum_probs=118.3
Q ss_pred cCcccch--hcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCC-CCEEEeeCCCCCcccc
Q 012173 4 QLKKFPQ--IVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKS-PKTLNLSGCCKLENVP 80 (469)
Q Consensus 4 ~L~~lp~--~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~s-L~~L~Ls~c~~l~~lp 80 (469)
++..+|. .++++++|+.|+|++|.+..+| .++.+++|+.|+|++|. +..+|..+.++++ |++|++++|. +..+|
T Consensus 559 ~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp 635 (876)
T 4ecn_A 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK-LKYIP 635 (876)
T ss_dssp CCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC-CCSCC
T ss_pred cCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCC-CCcCc
Confidence 3444444 4444555555555555444444 44555555555555544 2244444444544 5555555443 22444
Q ss_pred ccccCCCC--cCEEeccCcCCCCCCc----ccc--CCcCCceeeccCCCCCCCcc--C--cccccccCCccccccccCCC
Q 012173 81 DTLGQVES--LEELDISETAVRRPPS----SIF--LMKNLRTLSLFGCNGPPSWH--L--HLPFNLMGKSSCLVALMLPS 148 (469)
Q Consensus 81 ~~l~~l~~--L~~L~L~~~~i~~lp~----~l~--~l~~L~~L~l~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~ 148 (469)
..++.+.. |+.|++++|.+...+. .+. .+.+|+.|++++|....... . ...+..+..+.+....+|..
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~ 715 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChH
Confidence 44333322 4444444443332111 111 12244444544443210000 0 01122222333333344443
Q ss_pred CCC--------CCCCCEEEccCCCCCCCCCCCCCC--CCCCCcEEEcCCCCCcccCccccCCCCcCEEeccC------Cc
Q 012173 149 LSG--------LRSLTKLDLSDCGLGEGAIPSDIG--NLHSLNELYLSKNNFVTLPASINSLLNLKELEMED------CK 212 (469)
Q Consensus 149 l~~--------l~~L~~L~Ls~~~l~~~~~p~~l~--~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~------c~ 212 (469)
+.. +++|+.|+|++|++. .+|..+. .+++|+.|+|++|.++.+|..+..+++|+.|+|++ |.
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~--~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~ 793 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNKLT--SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNR 793 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSCCC--CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCB
T ss_pred HhccccccccccCCccEEECCCCCCc--cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCccccc
Confidence 322 337888888888775 4777776 77888888888888888887777888888888866 33
Q ss_pred ccCcCCCC---CCCccEEEecCCCCCcccccc
Q 012173 213 RLQSLPQL---PPNIIFVKVNGCSSLVTLLGA 241 (469)
Q Consensus 213 ~L~~lp~l---p~~L~~L~i~~C~~L~~l~~~ 241 (469)
....+|.. .++|+.|++++|.- ..++..
T Consensus 794 l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~ 824 (876)
T 4ecn_A 794 ILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK 824 (876)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred ccccChHHHhcCCCCCEEECCCCCC-CccCHh
Confidence 34445532 35777777777643 666553
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.82 E-value=4.6e-19 Score=174.60 Aligned_cols=223 Identities=17% Similarity=0.259 Sum_probs=131.0
Q ss_pred CcCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccccc
Q 012173 3 LQLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDT 82 (469)
Q Consensus 3 ~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~ 82 (469)
+.++.+|. ++.+++|++|++++|.++.++. ++.+++|++|++++|. +..+|. +.++++|++|++++|. +..++.
T Consensus 54 ~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~l~~n~-i~~~~~- 127 (347)
T 4fmz_A 54 EKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDISA-LQNLTNLRELYLNEDN-ISDISP- 127 (347)
T ss_dssp SCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEECTTSC-CCCCGG-
T ss_pred Cccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCchH-HcCCCcCCEEECcCCc-ccCchh-
Confidence 45566665 4567788888888887777766 7777888888887764 555553 6777777777777754 444444
Q ss_pred ccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCccCc--ccccccCCccccccccCCCCCCCCCCCEEEc
Q 012173 83 LGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLH--LPFNLMGKSSCLVALMLPSLSGLRSLTKLDL 160 (469)
Q Consensus 83 l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L 160 (469)
+..+++|++|++++|.....+..+..+++|++|++.+|.......+. ..+..+....+....+++ +..+++|+.|++
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l 206 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTA 206 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEEC
T ss_pred hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeec
Confidence 66677777777777744444444666777777777666532211110 111112222222222222 555666777777
Q ss_pred cCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCcccCcCCCC--CCCccEEEecCCCCCccc
Q 012173 161 SDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQSLPQL--PPNIIFVKVNGCSSLVTL 238 (469)
Q Consensus 161 s~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l--p~~L~~L~i~~C~~L~~l 238 (469)
++|.+.+ ++. +..+++|+.|++++|.++.++. +..+++|+.|++++|. +..++.+ .++|+.|++.+| .++.+
T Consensus 207 ~~n~l~~--~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n-~l~~~ 280 (347)
T 4fmz_A 207 YVNQITD--ITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNVGSN-QISDI 280 (347)
T ss_dssp CSSCCCC--CGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCCC
T ss_pred ccCCCCC--Cch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCc-cCCChhHhcCCCcCEEEccCC-ccCCC
Confidence 7766642 222 5566667777777776666665 6666667777776653 3333322 356666666665 34433
No 26
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=7.4e-19 Score=179.14 Aligned_cols=207 Identities=26% Similarity=0.348 Sum_probs=143.7
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccC-cccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVP-SSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVP 80 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp 80 (469)
+..|+++|..+. ++++.|+|++|++..++ ..++.+++|++|+|++|......+..+.++++|++|+|++| .+..+|
T Consensus 52 ~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~ 128 (440)
T 3zyj_A 52 RKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIP 128 (440)
T ss_dssp SCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCC
T ss_pred CCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeC
Confidence 457889998764 78999999999999875 67899999999999998744444467889999999999997 455555
Q ss_pred c-cccCCCCcCEEeccCcCCCCCCc-cccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEE
Q 012173 81 D-TLGQVESLEELDISETAVRRPPS-SIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKL 158 (469)
Q Consensus 81 ~-~l~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 158 (469)
. .+..+++|++|++++|.+..++. .+..+++|++|++.+|..+.... +..+.++++|+.|
T Consensus 129 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~------------------~~~~~~l~~L~~L 190 (440)
T 3zyj_A 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS------------------EGAFEGLSNLRYL 190 (440)
T ss_dssp TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC------------------TTTTTTCSSCCEE
T ss_pred HhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC------------------cchhhcccccCee
Confidence 4 68899999999999999998765 67789999999999876432211 2245555666666
Q ss_pred EccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCccc-CccccCCCCcCEEeccCCcccCcCCC---CCCCccEEEecCC
Q 012173 159 DLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL-PASINSLLNLKELEMEDCKRLQSLPQ---LPPNIIFVKVNGC 232 (469)
Q Consensus 159 ~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~---lp~~L~~L~i~~C 232 (469)
++++|.+.. +| .+..+++|+.|+|++|.++.+ |..+..+++|+.|++++|..-...+. -.++|+.|+++++
T Consensus 191 ~L~~n~l~~--~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 191 NLAMCNLRE--IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp ECTTSCCSS--CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred cCCCCcCcc--cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence 666666532 44 355556666666666666544 34555566666666666532221111 1245556655554
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=1e-18 Score=171.31 Aligned_cols=101 Identities=19% Similarity=0.237 Sum_probs=48.2
Q ss_pred CCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEeccC
Q 012173 17 DLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISE 96 (469)
Q Consensus 17 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 96 (469)
+|+.++++++.++.+|..+. ++|++|++++|......|..+.++++|++|++++|......|..++.+++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 35555555555555554332 4555555555442222233455555555555555433333344455555555555555
Q ss_pred cCCCCCCccccCCcCCceeeccCCC
Q 012173 97 TAVRRPPSSIFLMKNLRTLSLFGCN 121 (469)
Q Consensus 97 ~~i~~lp~~l~~l~~L~~L~l~~~~ 121 (469)
|.+..+|..+. ++|++|++++|.
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~ 134 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNR 134 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSC
T ss_pred CcCCccCcccc--ccCCEEECCCCc
Confidence 55555544433 455555555443
No 28
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=4.9e-19 Score=180.46 Aligned_cols=207 Identities=23% Similarity=0.314 Sum_probs=165.7
Q ss_pred CCcCcccc-hhcCCCCCCcEEeeeccCCcccC-cccCCCCCCCEEeccCCCCCcccCc-cCCCCCCCCEEEeeCCCCCcc
Q 012173 2 RLQLKKFP-QIVTTMKDLSELNLDGTSITEVP-SSIELLPGLELLNLNDCKNLARVPS-SINGLKSPKTLNLSGCCKLEN 78 (469)
Q Consensus 2 ~~~L~~lp-~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~-~i~~L~sL~~L~Ls~c~~l~~ 78 (469)
.|+++.++ ..+.++++|++|+|++|.+..++ ..+..+++|++|+|++|. +..+|. .+..+++|++|++++|.....
T Consensus 73 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 151 (440)
T 3zyj_A 73 ENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESI 151 (440)
T ss_dssp SCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCCCCEE
T ss_pred CCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCccccc
Confidence 46677776 57889999999999999999885 678999999999999986 666665 688999999999999754433
Q ss_pred ccccccCCCCcCEEeccCc-CCCCCCc-cccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCC
Q 012173 79 VPDTLGQVESLEELDISET-AVRRPPS-SIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLT 156 (469)
Q Consensus 79 lp~~l~~l~~L~~L~L~~~-~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 156 (469)
.+..+..+++|++|+++++ .+..++. .+..+++|++|++++|... . .+.+..+++|+
T Consensus 152 ~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~--------------------~-~~~~~~l~~L~ 210 (440)
T 3zyj_A 152 PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR--------------------E-IPNLTPLIKLD 210 (440)
T ss_dssp CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS--------------------S-CCCCTTCSSCC
T ss_pred CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc--------------------c-ccccCCCcccC
Confidence 3457889999999999984 5555554 5788999999999998622 1 23577889999
Q ss_pred EEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccC-ccccCCCCcCEEeccCCcccCcCCC-C---CCCccEEEecC
Q 012173 157 KLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLP-ASINSLLNLKELEMEDCKRLQSLPQ-L---PPNIIFVKVNG 231 (469)
Q Consensus 157 ~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~L~~c~~L~~lp~-l---p~~L~~L~i~~ 231 (469)
.|+|++|.+. +..|..+..+++|+.|+|++|.++.++ ..+..+++|+.|+|++|+ ++.+|. . .++|+.|++.+
T Consensus 211 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 211 ELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp EEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCS
T ss_pred EEECCCCccC-ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCC
Confidence 9999999986 455788999999999999999999765 467889999999999984 445442 1 24566666655
Q ss_pred C
Q 012173 232 C 232 (469)
Q Consensus 232 C 232 (469)
.
T Consensus 289 N 289 (440)
T 3zyj_A 289 N 289 (440)
T ss_dssp S
T ss_pred C
Confidence 3
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=9.4e-19 Score=171.32 Aligned_cols=214 Identities=21% Similarity=0.298 Sum_probs=111.0
Q ss_pred CCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccC-ccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEecc
Q 012173 17 DLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVP-SSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDIS 95 (469)
Q Consensus 17 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 95 (469)
+|+.++++++.++.+|..+. ++|++|++++|. +..+| ..+.++++|++|++++|......|..++.+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 56666666666666665443 466666666655 33333 246666666666666654443345566666666666666
Q ss_pred CcCCCCCCccccCCcCCceeeccCCCCCCCcc--C--cccccccCCcccc---ccccCCCCCCCCCCCEEEccCCCCCCC
Q 012173 96 ETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWH--L--HLPFNLMGKSSCL---VALMLPSLSGLRSLTKLDLSDCGLGEG 168 (469)
Q Consensus 96 ~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~--~--~~~~~~~~~~~~~---~~~~~~~l~~l~~L~~L~Ls~~~l~~~ 168 (469)
+|.+.++|..+. ++|++|++++|....... + ...+..+....+. .+..+..+..+++|+.|++++|.+..
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~- 185 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT- 185 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-
Confidence 666666655443 566666666654211100 0 0011111111111 11334445556666666666666632
Q ss_pred CCCCCCCCCCCCcEEEcCCCCCccc-CccccCCCCcCEEeccCCcccCcCCC-C--CCCccEEEecCCCCCccccc
Q 012173 169 AIPSDIGNLHSLNELYLSKNNFVTL-PASINSLLNLKELEMEDCKRLQSLPQ-L--PPNIIFVKVNGCSSLVTLLG 240 (469)
Q Consensus 169 ~~p~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~-l--p~~L~~L~i~~C~~L~~l~~ 240 (469)
+|..+. ++|+.|++++|.++.+ |..+..+++|+.|++++|..-...+. + .++|+.|++.+| .++.++.
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~ 257 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPG 257 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCT
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCCh
Confidence 454433 5666666666666654 34556666666666666542221111 1 245666666655 3444443
No 30
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=7e-19 Score=169.20 Aligned_cols=196 Identities=24% Similarity=0.302 Sum_probs=156.0
Q ss_pred cCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCE
Q 012173 12 VTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEE 91 (469)
Q Consensus 12 ~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~ 91 (469)
++++++|+.++++++.++.+|..+. ++|+.|+|++|......|..+.++++|++|++++| .+..++.. +.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCE
Confidence 4678899999999999999987664 78999999998855555677889999999999986 45666654 78999999
Q ss_pred EeccCcCCCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCCCC
Q 012173 92 LDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIP 171 (469)
Q Consensus 92 L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p 171 (469)
|++++|.+..+|..+..+++|++|++++|... ...+..+..+++|+.|++++|.+. ...+
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~-------------------~l~~~~~~~l~~L~~L~L~~N~l~-~~~~ 141 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-------------------SLPLGALRGLGELQELYLKGNELK-TLPP 141 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSCCC-------------------CCCSSTTTTCTTCCEEECTTSCCC-CCCT
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCcCc-------------------ccCHHHHcCCCCCCEEECCCCCCC-ccCh
Confidence 99999999999998899999999999988621 122456788999999999999986 3344
Q ss_pred CCCCCCCCCcEEEcCCCCCcccCccc-cCCCCcCEEeccCCcccCcCCCC---CCCccEEEecCC
Q 012173 172 SDIGNLHSLNELYLSKNNFVTLPASI-NSLLNLKELEMEDCKRLQSLPQL---PPNIIFVKVNGC 232 (469)
Q Consensus 172 ~~l~~l~~L~~L~L~~n~l~~lp~~i-~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~i~~C 232 (469)
..+..+++|+.|+|++|+++.+|..+ ..+++|+.|++++|+ ++.+|.. .++|+.|++.+.
T Consensus 142 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSC
T ss_pred hhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCC
Confidence 45788999999999999999988754 779999999999974 5556543 135666666543
No 31
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=178.24 Aligned_cols=189 Identities=19% Similarity=0.236 Sum_probs=155.5
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccCc-ccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVP 80 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp 80 (469)
.+.++++|..+. ++|++|++++|.++.++. .++.+++|++|++++|......|..+.++++|++|++++|. +..+|
T Consensus 40 ~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~ 116 (353)
T 2z80_A 40 SGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLS 116 (353)
T ss_dssp STTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCC
T ss_pred CCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCC
Confidence 467889998764 699999999999998876 78999999999999987444446679999999999999974 55666
Q ss_pred cc-ccCCCCcCEEeccCcCCCCCCc--cccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCE
Q 012173 81 DT-LGQVESLEELDISETAVRRPPS--SIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTK 157 (469)
Q Consensus 81 ~~-l~~l~~L~~L~L~~~~i~~lp~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 157 (469)
.. ++.+++|++|++++|.+..+|. .+..+++|++|++++|.... ...+..+..+++|++
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~------------------~~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT------------------KIQRKDFAGLTFLEE 178 (353)
T ss_dssp HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC------------------EECTTTTTTCCEEEE
T ss_pred HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc------------------ccCHHHccCCCCCCE
Confidence 55 8899999999999999999987 68899999999999885221 122456778889999
Q ss_pred EEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccc-cCCCCcCEEeccCCc
Q 012173 158 LDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASI-NSLLNLKELEMEDCK 212 (469)
Q Consensus 158 L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i-~~l~~L~~L~L~~c~ 212 (469)
|++++|.+. +..|..++.+++|++|++++|.+..+|..+ ..+++|+.|++++|.
T Consensus 179 L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 179 LEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp EEEEETTCC-EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred EECCCCCcC-ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence 999999885 455788888889999999999888777654 457888999888875
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=2e-19 Score=190.48 Aligned_cols=221 Identities=18% Similarity=0.178 Sum_probs=122.6
Q ss_pred CCCCcEEeeeccCCcccCcc-cCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEe
Q 012173 15 MKDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELD 93 (469)
Q Consensus 15 l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 93 (469)
+.+++.|+++++.+..+|.. ++.+++|++|+|++|......|..+..+++|++|+|++|......|..++.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 46667777777777766654 46677777777777663333334666777777777777654444444566777777777
Q ss_pred ccCcCCCCCCccc-cCCcCCceeeccCCCCCCCc--cCc--ccccccCCcccccccc-CCCC------------------
Q 012173 94 ISETAVRRPPSSI-FLMKNLRTLSLFGCNGPPSW--HLH--LPFNLMGKSSCLVALM-LPSL------------------ 149 (469)
Q Consensus 94 L~~~~i~~lp~~l-~~l~~L~~L~l~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~-~~~l------------------ 149 (469)
+++|.+..+|..+ ..+++|++|++++|...... .+. ..+..+..+.+....+ +..+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~ 209 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence 7777777666553 66777777777766421110 010 0111111111100000 0000
Q ss_pred -------------------CCCCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCccc-CccccCCCCcCEEecc
Q 012173 150 -------------------SGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL-PASINSLLNLKELEME 209 (469)
Q Consensus 150 -------------------~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~ 209 (469)
...++|+.|++++|.+.. +..++.+++|+.|+|++|.++.+ |..+..+++|+.|+|+
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~---~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 286 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 286 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECT
T ss_pred CchhheeeccCCcccccccccCCCCCEEECCCCCCCC---ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECC
Confidence 011346666666666642 35566677777777777777644 5566677777777777
Q ss_pred CCcccCcCCCC---CCCccEEEecCCCCCccccc
Q 012173 210 DCKRLQSLPQL---PPNIIFVKVNGCSSLVTLLG 240 (469)
Q Consensus 210 ~c~~L~~lp~l---p~~L~~L~i~~C~~L~~l~~ 240 (469)
+|. +..+|.. .++|+.|++++|. +..++.
T Consensus 287 ~N~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~ 318 (597)
T 3oja_B 287 NNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVER 318 (597)
T ss_dssp TSC-CCEEECSSSCCTTCCEEECCSSC-CCCCGG
T ss_pred CCC-CCCCCcccccCCCCcEEECCCCC-CCccCc
Confidence 753 3333322 3567777776653 444443
No 33
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=4.7e-18 Score=179.59 Aligned_cols=215 Identities=23% Similarity=0.260 Sum_probs=144.2
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPD 81 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~ 81 (469)
.+.|+.+|..+. ++|++|+|++|.|+.+|. .+++|++|+|++|. +..+|. .+++|++|++++| .+..+|.
T Consensus 49 ~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N-~l~~l~~ 118 (622)
T 3g06_A 49 ESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFSN-PLTHLPA 118 (622)
T ss_dssp SSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECSC-CCCCCCC
T ss_pred CCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcCC-cCCCCCC
Confidence 467888898765 799999999999998887 57899999999987 677886 6789999999886 5566666
Q ss_pred cccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEcc
Q 012173 82 TLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLS 161 (469)
Q Consensus 82 ~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls 161 (469)
.+++|+.|++++|.+..+|.. +++|++|++++|...........+..+....+....++ ..+++|+.|+++
T Consensus 119 ---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls 189 (622)
T 3g06_A 119 ---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP---MLPSGLQELSVS 189 (622)
T ss_dssp ---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECC
T ss_pred ---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCc---ccCCCCcEEECC
Confidence 467888888888888888764 47888888888753211111111111222222222222 234555666666
Q ss_pred CCCCCCCCCCCCC-----------------CCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCcccCcCCCCCCCc
Q 012173 162 DCGLGEGAIPSDI-----------------GNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQSLPQLPPNI 224 (469)
Q Consensus 162 ~~~l~~~~~p~~l-----------------~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~L 224 (469)
+|.+.. +|..+ ..+++|+.|+|++|.++.+| ..+++|+.|++++| .++.+|..+++|
T Consensus 190 ~N~l~~--l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~~~~~L 263 (622)
T 3g06_A 190 DNQLAS--LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGN-RLTSLPMLPSGL 263 (622)
T ss_dssp SSCCSC--CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCCCCTTC
T ss_pred CCCCCC--CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCC-CCCcCCcccccC
Confidence 555532 33221 12366777777777777777 45577888888886 566777777788
Q ss_pred cEEEecCCCCCcccccch
Q 012173 225 IFVKVNGCSSLVTLLGAL 242 (469)
Q Consensus 225 ~~L~i~~C~~L~~l~~~~ 242 (469)
+.|++.+| .|+.++...
T Consensus 264 ~~L~Ls~N-~L~~lp~~l 280 (622)
T 3g06_A 264 LSLSVYRN-QLTRLPESL 280 (622)
T ss_dssp CEEECCSS-CCCSCCGGG
T ss_pred cEEeCCCC-CCCcCCHHH
Confidence 88888876 566665543
No 34
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.81 E-value=7.8e-19 Score=186.09 Aligned_cols=191 Identities=24% Similarity=0.249 Sum_probs=118.5
Q ss_pred CcCcccch-hcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccc
Q 012173 3 LQLKKFPQ-IVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPD 81 (469)
Q Consensus 3 ~~L~~lp~-~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~ 81 (469)
+++..+|. .++.+++|++|++++|.++++|..++.+++|++|++++|......|..+.++++|++|++++|.....+|.
T Consensus 264 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 343 (606)
T 3t6q_A 264 HYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343 (606)
T ss_dssp CCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS
T ss_pred CccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch
Confidence 34555554 36677778888888777777777777778888888877765444566677777788888877766555554
Q ss_pred c-ccCCCCcCEEeccCcCCCCC---CccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCE
Q 012173 82 T-LGQVESLEELDISETAVRRP---PSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTK 157 (469)
Q Consensus 82 ~-l~~l~~L~~L~L~~~~i~~l---p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 157 (469)
. ++.+++|++|++++|.+... +..+..+++|++|++++|.. .+..+..+..+++|+.
T Consensus 344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-------------------~~~~~~~~~~l~~L~~ 404 (606)
T 3t6q_A 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP-------------------LSLKTEAFKECPQLEL 404 (606)
T ss_dssp STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSC-------------------EEECTTTTTTCTTCSE
T ss_pred hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcC-------------------CcCCHHHhcCCccCCe
Confidence 3 67777788888877777654 45667777788887777652 1222344455555555
Q ss_pred EEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCccc-CccccCCCCcCEEeccCCc
Q 012173 158 LDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL-PASINSLLNLKELEMEDCK 212 (469)
Q Consensus 158 L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~ 212 (469)
|++++|.+.....+..+..+++|+.|++++|.+... |..+..+++|+.|++++|+
T Consensus 405 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp EECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred EECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 555555543222223345555555555555555532 3344555555555555554
No 35
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=6.1e-19 Score=180.40 Aligned_cols=206 Identities=24% Similarity=0.338 Sum_probs=166.0
Q ss_pred CCcCccc-chhcCCCCCCcEEeeeccCCcccC-cccCCCCCCCEEeccCCCCCcccCc-cCCCCCCCCEEEeeCCCCCcc
Q 012173 2 RLQLKKF-PQIVTTMKDLSELNLDGTSITEVP-SSIELLPGLELLNLNDCKNLARVPS-SINGLKSPKTLNLSGCCKLEN 78 (469)
Q Consensus 2 ~~~L~~l-p~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~-~i~~L~sL~~L~Ls~c~~l~~ 78 (469)
.|+++.+ |+.++++++|++|+|++|.+..++ ..++.+++|++|+|++|. +..+|. .+..+++|++|++++|.. ..
T Consensus 84 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l-~~ 161 (452)
T 3zyi_A 84 ENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPI-ES 161 (452)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCCC-CE
T ss_pred CCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCCc-ce
Confidence 4667777 457889999999999999999875 678999999999999987 556654 488899999999999754 45
Q ss_pred cc-ccccCCCCcCEEeccC-cCCCCCCc-cccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCC
Q 012173 79 VP-DTLGQVESLEELDISE-TAVRRPPS-SIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSL 155 (469)
Q Consensus 79 lp-~~l~~l~~L~~L~L~~-~~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 155 (469)
+| ..+.++++|++|++++ +.+..++. .+..+++|++|++++|.... .+.+..+++|
T Consensus 162 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~---------------------~~~~~~l~~L 220 (452)
T 3zyi_A 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD---------------------MPNLTPLVGL 220 (452)
T ss_dssp ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS---------------------CCCCTTCTTC
T ss_pred eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc---------------------cccccccccc
Confidence 54 4688999999999998 46666654 57889999999999986211 2457788999
Q ss_pred CEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCccc-CccccCCCCcCEEeccCCcccCcCCC-C---CCCccEEEec
Q 012173 156 TKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL-PASINSLLNLKELEMEDCKRLQSLPQ-L---PPNIIFVKVN 230 (469)
Q Consensus 156 ~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~-l---p~~L~~L~i~ 230 (469)
+.|++++|.+. +..|..+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++| .++.+|. . .++|+.|++.
T Consensus 221 ~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~ 298 (452)
T 3zyi_A 221 EELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLH 298 (452)
T ss_dssp CEEECTTSCCS-EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECC
T ss_pred cEEECcCCcCc-ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEcc
Confidence 99999999996 45578899999999999999999976 456788999999999998 4555553 1 2566677666
Q ss_pred CC
Q 012173 231 GC 232 (469)
Q Consensus 231 ~C 232 (469)
+.
T Consensus 299 ~N 300 (452)
T 3zyi_A 299 HN 300 (452)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 36
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=2.2e-18 Score=165.66 Aligned_cols=185 Identities=23% Similarity=0.275 Sum_probs=159.1
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCccc-CcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVP 80 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp 80 (469)
.++|+.+|..+. ++|+.|+|++|.++.+ +..+..+++|++|+|++|. +..+|.. ..+++|++|++++| .+..+|
T Consensus 19 ~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~ 93 (290)
T 1p9a_G 19 KRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDLSHN-QLQSLP 93 (290)
T ss_dssp TSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEEECCSS-CCSSCC
T ss_pred CCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEEECCCC-cCCcCc
Confidence 467889998764 7999999999999977 5678999999999999987 6667764 78999999999996 667899
Q ss_pred ccccCCCCcCEEeccCcCCCCCC-ccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEE
Q 012173 81 DTLGQVESLEELDISETAVRRPP-SSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLD 159 (469)
Q Consensus 81 ~~l~~l~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 159 (469)
..+..+++|++|++++|.++.+| ..+..+++|++|++++|... ...+..+..+++|+.|+
T Consensus 94 ~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-------------------~~~~~~~~~l~~L~~L~ 154 (290)
T 1p9a_G 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-------------------TLPPGLLTPTPKLEKLS 154 (290)
T ss_dssp CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-------------------CCCTTTTTTCTTCCEEE
T ss_pred hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-------------------ccChhhcccccCCCEEE
Confidence 98999999999999999999987 56889999999999998621 11244567899999999
Q ss_pred ccCCCCCCCCCCC-CCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCc
Q 012173 160 LSDCGLGEGAIPS-DIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 212 (469)
Q Consensus 160 Ls~~~l~~~~~p~-~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 212 (469)
+++|++. .+|. .+..+++|+.|+|++|.++.+|..+..+.+|+.|++++++
T Consensus 155 L~~N~l~--~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 155 LANNNLT--ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CTTSCCS--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CCCCcCC--ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 9999996 3555 4678999999999999999999999999999999999985
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=1.1e-18 Score=179.68 Aligned_cols=119 Identities=20% Similarity=0.316 Sum_probs=90.3
Q ss_pred CCcCcccc-hhcCCCCCCcEEeeeccCCccc-CcccCCCCCCCEEeccCCCCCcccCc-cCCCCCCCCEEEeeCCCCCcc
Q 012173 2 RLQLKKFP-QIVTTMKDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNLARVPS-SINGLKSPKTLNLSGCCKLEN 78 (469)
Q Consensus 2 ~~~L~~lp-~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~-~i~~L~sL~~L~Ls~c~~l~~ 78 (469)
.++++.++ ..+.++++|++|+|++|.+..+ |..++++++|++|+|++|. +..+|. .+.++++|++|++++|.....
T Consensus 41 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 119 (477)
T 2id5_A 41 KNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVIL 119 (477)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEE
T ss_pred CCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccC
Confidence 35676764 4677888888888888888876 6678888888888888876 556654 367788888888888766555
Q ss_pred ccccccCCCCcCEEeccCcCCCCC-CccccCCcCCceeeccCCC
Q 012173 79 VPDTLGQVESLEELDISETAVRRP-PSSIFLMKNLRTLSLFGCN 121 (469)
Q Consensus 79 lp~~l~~l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~l~~~~ 121 (469)
.|..+..+++|++|++++|.+..+ +..+..+++|+.|++++|.
T Consensus 120 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 163 (477)
T 2id5_A 120 LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN 163 (477)
T ss_dssp CTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC
T ss_pred ChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc
Confidence 666777888888888888877755 4466777888888887765
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=6.2e-19 Score=181.45 Aligned_cols=208 Identities=26% Similarity=0.334 Sum_probs=163.6
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCccc-CcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVP 80 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp 80 (469)
+.+++.+|..+. ++|+.|+|++|+++.+ +..++.+++|++|+|++|......|..+.++++|++|++++|. +..+|
T Consensus 20 ~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~ 96 (477)
T 2id5_A 20 RKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIP 96 (477)
T ss_dssp SCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCC
T ss_pred CCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccC
Confidence 357889998764 7999999999999988 5679999999999999987555558889999999999999975 55666
Q ss_pred c-cccCCCCcCEEeccCcCCCCC-CccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEE
Q 012173 81 D-TLGQVESLEELDISETAVRRP-PSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKL 158 (469)
Q Consensus 81 ~-~l~~l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 158 (469)
. .++++++|++|++++|.+..+ +..+..+++|++|++++|.. ....+..+..+++|+.|
T Consensus 97 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l-------------------~~~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL-------------------VYISHRAFSGLNSLEQL 157 (477)
T ss_dssp TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTC-------------------CEECTTSSTTCTTCCEE
T ss_pred cccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcc-------------------ceeChhhccCCCCCCEE
Confidence 4 578999999999999999866 56788999999999998762 12225567778888888
Q ss_pred EccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCc-cccCCCCcCEEeccCCcccCcCCCC---CCCccEEEecCC
Q 012173 159 DLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCKRLQSLPQL---PPNIIFVKVNGC 232 (469)
Q Consensus 159 ~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~i~~C 232 (469)
++++|.+.. ..+..+..+++|+.|+|++|.+..++. .+..+++|+.|++++|..+..+|.. ..+|+.|++.+|
T Consensus 158 ~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 234 (477)
T 2id5_A 158 TLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234 (477)
T ss_dssp EEESCCCSS-CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS
T ss_pred ECCCCcCcc-cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC
Confidence 888888752 223357778888888888888886654 5677888888888888777666532 236777777665
No 39
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.80 E-value=5.9e-19 Score=168.27 Aligned_cols=190 Identities=19% Similarity=0.224 Sum_probs=154.8
Q ss_pred CCcCcccch-hcCCCCCCcEEeeeccCCcccCc-ccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccc
Q 012173 2 RLQLKKFPQ-IVTTMKDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENV 79 (469)
Q Consensus 2 ~~~L~~lp~-~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~l 79 (469)
.++++.+|. .++.+++|++|+|++|.+..++. .++.+++|++|+|++|......|..+.++++|++|++++|......
T Consensus 37 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 116 (276)
T 2z62_A 37 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116 (276)
T ss_dssp TCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCST
T ss_pred CCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccC
Confidence 367778876 68889999999999999998865 7899999999999998855555577999999999999997655544
Q ss_pred cccccCCCCcCEEeccCcCCCC--CCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCC-
Q 012173 80 PDTLGQVESLEELDISETAVRR--PPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLT- 156 (469)
Q Consensus 80 p~~l~~l~~L~~L~L~~~~i~~--lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~- 156 (469)
+..++.+++|++|++++|.+.. +|..+..+++|++|++++|... +..+..+..+++|+
T Consensus 117 ~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~-------------------~~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-------------------SIYCTDLRVLHQMPL 177 (276)
T ss_dssp TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC-------------------EECGGGGHHHHTCTT
T ss_pred chhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC-------------------cCCHHHhhhhhhccc
Confidence 5578999999999999999986 6889999999999999998621 11122333344444
Q ss_pred ---EEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCcc-ccCCCCcCEEeccCCc
Q 012173 157 ---KLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPAS-INSLLNLKELEMEDCK 212 (469)
Q Consensus 157 ---~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 212 (469)
.|++++|.+. .++.......+|+.|+|++|.++.+|.. +..+++|+.|++++|+
T Consensus 178 l~l~L~ls~n~l~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 178 LNLSLDLSLNPMN--FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CCEEEECCSSCCC--EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred cceeeecCCCccc--ccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 8999999985 3666555666899999999999999875 4789999999999985
No 40
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.80 E-value=1e-18 Score=178.60 Aligned_cols=232 Identities=20% Similarity=0.189 Sum_probs=172.5
Q ss_pred cc-chhcCCCCCCcEEeeeccCCccc-CcccCCCCCCCEEeccCCCCCcccCcc--CCCCCCCCEEEeeCCCCCcccccc
Q 012173 7 KF-PQIVTTMKDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNLARVPSS--INGLKSPKTLNLSGCCKLENVPDT 82 (469)
Q Consensus 7 ~l-p~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~--i~~L~sL~~L~Ls~c~~l~~lp~~ 82 (469)
.+ |..+..+++|++|+|++|.+..+ |..++.+++|++|+|++|.....+|.. +.++++|++|++++|...+..|..
T Consensus 69 ~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 148 (455)
T 3v47_A 69 VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG
T ss_pred eECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccc
Confidence 44 45688899999999999999876 778999999999999999865545554 889999999999998766666765
Q ss_pred -ccCCCCcCEEeccCcCCCCC-Ccccc----------------------------------CCcCCceeeccCCCCCCCc
Q 012173 83 -LGQVESLEELDISETAVRRP-PSSIF----------------------------------LMKNLRTLSLFGCNGPPSW 126 (469)
Q Consensus 83 -l~~l~~L~~L~L~~~~i~~l-p~~l~----------------------------------~l~~L~~L~l~~~~~~~~~ 126 (469)
++.+++|++|++++|.+..+ +..+. .+++|++|++++|......
T Consensus 149 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 228 (455)
T 3v47_A 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228 (455)
T ss_dssp GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH
T ss_pred ccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccc
Confidence 88999999999999988865 33333 2357788888777421000
Q ss_pred c----------------C---------------------------cccccccCCc-cccccccCCCCCCCCCCCEEEccC
Q 012173 127 H----------------L---------------------------HLPFNLMGKS-SCLVALMLPSLSGLRSLTKLDLSD 162 (469)
Q Consensus 127 ~----------------~---------------------------~~~~~~~~~~-~~~~~~~~~~l~~l~~L~~L~Ls~ 162 (469)
. + ...+..+... +...+..+..+..+++|+.|++++
T Consensus 229 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 308 (455)
T 3v47_A 229 AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308 (455)
T ss_dssp HHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTT
T ss_pred hhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCC
Confidence 0 0 0011112222 223444577789999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEcCCCCCccc-CccccCCCCcCEEeccCCcccCcCCCC---CCCccEEEecCCCCCccc
Q 012173 163 CGLGEGAIPSDIGNLHSLNELYLSKNNFVTL-PASINSLLNLKELEMEDCKRLQSLPQL---PPNIIFVKVNGCSSLVTL 238 (469)
Q Consensus 163 ~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~i~~C~~L~~l 238 (469)
|.+. +..|..++.+++|+.|+|++|.++.+ |..+..+++|+.|++++|......|.. .++|+.|++.++ .++.+
T Consensus 309 n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~ 386 (455)
T 3v47_A 309 NEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSV 386 (455)
T ss_dssp SCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCC
T ss_pred Cccc-ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccC
Confidence 9986 45577899999999999999999977 557788999999999998654433432 378999999885 45555
Q ss_pred cc
Q 012173 239 LG 240 (469)
Q Consensus 239 ~~ 240 (469)
+.
T Consensus 387 ~~ 388 (455)
T 3v47_A 387 PD 388 (455)
T ss_dssp CT
T ss_pred CH
Confidence 54
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.80 E-value=5.9e-19 Score=187.05 Aligned_cols=223 Identities=23% Similarity=0.273 Sum_probs=138.8
Q ss_pred CcCcccchhcCCCCCCcEEeeeccCC-cccCcccCCCCCCCEEeccCCCCCcc--cCccCCCCCCCCEEEeeCCCCCccc
Q 012173 3 LQLKKFPQIVTTMKDLSELNLDGTSI-TEVPSSIELLPGLELLNLNDCKNLAR--VPSSINGLKSPKTLNLSGCCKLENV 79 (469)
Q Consensus 3 ~~L~~lp~~~~~l~~L~~L~L~~~~l-~~lp~~i~~l~~L~~L~L~~c~~l~~--lp~~i~~L~sL~~L~Ls~c~~l~~l 79 (469)
++++.+|.. .+++|++|++++|.. ..+ .++.+++|++|++++|..... +|..+..+++|++|++++|. +..+
T Consensus 317 n~l~~lp~~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~ 391 (606)
T 3vq2_A 317 CQLKQFPTL--DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIM 391 (606)
T ss_dssp CCCSSCCCC--CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEE
T ss_pred ccCcccccC--CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccc
Confidence 456777854 688899999988843 333 467888888888888763322 26667788888888888864 5667
Q ss_pred cccccCCCCcCEEeccCcCCCCCC--ccccCCcCCceeeccCCCCCCCc--cC--cccccccCCccc-ccc-ccCCCCCC
Q 012173 80 PDTLGQVESLEELDISETAVRRPP--SSIFLMKNLRTLSLFGCNGPPSW--HL--HLPFNLMGKSSC-LVA-LMLPSLSG 151 (469)
Q Consensus 80 p~~l~~l~~L~~L~L~~~~i~~lp--~~l~~l~~L~~L~l~~~~~~~~~--~~--~~~~~~~~~~~~-~~~-~~~~~l~~ 151 (469)
|..++.+++|++|++++|.+...+ ..+..+++|++|++++|...... .+ ...+..+....+ ..+ ..+..+..
T Consensus 392 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 471 (606)
T 3vq2_A 392 SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471 (606)
T ss_dssp CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc
Confidence 777888888888888888877664 36778888888888887632110 00 011111122222 122 23555666
Q ss_pred CCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCccc-CccccCCCCcCEEeccCCcccCcCCC----CCCCccE
Q 012173 152 LRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL-PASINSLLNLKELEMEDCKRLQSLPQ----LPPNIIF 226 (469)
Q Consensus 152 l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~----lp~~L~~ 226 (469)
+++|+.|++++|.+. +..|..++.+++|+.|+|++|+++.+ |..+..+++|+.|++++|+ ++.+|. +|++|+.
T Consensus 472 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~ 549 (606)
T 3vq2_A 472 TTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAF 549 (606)
T ss_dssp CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCE
T ss_pred CCCCCEEECCCCcCC-ccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcE
Confidence 666666666666654 34455566666666666666666654 5556666666666666654 344442 2334555
Q ss_pred EEecCC
Q 012173 227 VKVNGC 232 (469)
Q Consensus 227 L~i~~C 232 (469)
|++.++
T Consensus 550 l~l~~N 555 (606)
T 3vq2_A 550 FNLTNN 555 (606)
T ss_dssp EECCSC
T ss_pred EEccCC
Confidence 555554
No 42
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=2.4e-18 Score=163.85 Aligned_cols=178 Identities=22% Similarity=0.300 Sum_probs=144.7
Q ss_pred CCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEE
Q 012173 13 TTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEEL 92 (469)
Q Consensus 13 ~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L 92 (469)
..+++|+.|+++++.+..++. ++.+++|++|++++|. +..++ .+.++++|++|++++|...+..+..++.+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 357889999999999888775 8899999999999987 55555 58889999999999975544444557889999999
Q ss_pred eccCcCCCCCCcc-ccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCCCC
Q 012173 93 DISETAVRRPPSS-IFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIP 171 (469)
Q Consensus 93 ~L~~~~i~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p 171 (469)
++++|.+..++.. +..+++|++|++++|... +..+..+..+++|+.|++++|.+. +..+
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------------------~~~~~~~~~l~~L~~L~l~~n~l~-~~~~ 174 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-------------------SLPKGVFDKLTNLTELDLSYNQLQ-SLPE 174 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------CCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccC-------------------ccCHHHhccCccCCEEECCCCCcC-ccCH
Confidence 9999999988665 678999999999988621 112345678899999999999986 4445
Q ss_pred CCCCCCCCCcEEEcCCCCCcccCcc-ccCCCCcCEEeccCCcc
Q 012173 172 SDIGNLHSLNELYLSKNNFVTLPAS-INSLLNLKELEMEDCKR 213 (469)
Q Consensus 172 ~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~~ 213 (469)
..++.+++|+.|++++|.++.+|.. +..+++|+.|++++|+.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 5578899999999999999987764 68899999999999853
No 43
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.80 E-value=3.1e-19 Score=189.16 Aligned_cols=186 Identities=18% Similarity=0.120 Sum_probs=127.3
Q ss_pred chhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccC-ccCCCCCCCCEEEeeCCCCCccccccccCCC
Q 012173 9 PQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVP-SSINGLKSPKTLNLSGCCKLENVPDTLGQVE 87 (469)
Q Consensus 9 p~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~ 87 (469)
|..++.+++|++|++++|.+..+|..++.+++|++|++++|......| ..+.++++|++|++++|......|..++.++
T Consensus 369 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 448 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448 (606)
T ss_dssp CHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred hhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence 444455556666666665555555555566666666666655333333 3455566666666666555444555555666
Q ss_pred CcCEEeccCcCCCC--CCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCC
Q 012173 88 SLEELDISETAVRR--PPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGL 165 (469)
Q Consensus 88 ~L~~L~L~~~~i~~--lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l 165 (469)
+|++|++++|.+.. +|..+..+++|++|++++|. ..+..+..+..+++|+.|++++|++
T Consensus 449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-------------------l~~~~~~~~~~l~~L~~L~Ls~N~l 509 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-------------------LEQISWGVFDTLHRLQLLNMSHNNL 509 (606)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-------------------CCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc-------------------CCccChhhhcccccCCEEECCCCcC
Confidence 66666666665553 45555566666666666554 2344467789999999999999999
Q ss_pred CCCCCCCCCCCCCCCcEEEcCCCCCcccCccccCCC-CcCEEeccCCccc
Q 012173 166 GEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLL-NLKELEMEDCKRL 214 (469)
Q Consensus 166 ~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~-~L~~L~L~~c~~L 214 (469)
. +..|..++.+++|+.|+|++|+++.+|..+..++ +|+.|++++|+..
T Consensus 510 ~-~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 510 L-FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp S-CEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred C-CcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcc
Confidence 6 5568899999999999999999999999998887 5999999998643
No 44
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.80 E-value=2.7e-18 Score=181.89 Aligned_cols=211 Identities=18% Similarity=0.159 Sum_probs=150.8
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCccc-CcccCCCCCCCEEeccCCCCCcccCcc-CCCCCCCCEEEeeCCCCCccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNLARVPSS-INGLKSPKTLNLSGCCKLENV 79 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~-i~~L~sL~~L~Ls~c~~l~~l 79 (469)
.++++++|+.++.+++|++|++++|.+..+ |..++.+++|++|++++|.....+|.. +.++++|++|++++|......
T Consensus 287 ~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 366 (606)
T 3t6q_A 287 ATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366 (606)
T ss_dssp TSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE
T ss_pred CCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc
Confidence 467889999999999999999999999977 668899999999999999877677654 889999999999998655443
Q ss_pred --cccccCCCCcCEEeccCcCCCCC-CccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccC-CCCCCCCCC
Q 012173 80 --PDTLGQVESLEELDISETAVRRP-PSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALML-PSLSGLRSL 155 (469)
Q Consensus 80 --p~~l~~l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~L 155 (469)
|..++.+++|++|++++|.+..+ |..+..+++|++|++++|.... ..+ ..+..+++|
T Consensus 367 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------~~~~~~~~~l~~L 427 (606)
T 3t6q_A 367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV-------------------KDAQSPFQNLHLL 427 (606)
T ss_dssp ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC-------------------CTTCCTTTTCTTC
T ss_pred CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC-------------------cccchhhhCcccC
Confidence 67789999999999999998865 6678889999999999886211 111 224556666
Q ss_pred CEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcc--c--CccccCCCCcCEEeccCCcccCcCCCC---CCCccEEE
Q 012173 156 TKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVT--L--PASINSLLNLKELEMEDCKRLQSLPQL---PPNIIFVK 228 (469)
Q Consensus 156 ~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~--l--p~~i~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~ 228 (469)
+.|++++|.+. +..|..++.+++|+.|++++|.++. + +..+..+++|+.|++++|......|.. .++|+.|+
T Consensus 428 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 506 (606)
T 3t6q_A 428 KVLNLSHSLLD-ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506 (606)
T ss_dssp CEEECTTCCCB-TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CEEECCCCccC-CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEE
Confidence 66666666653 3345555666666666666666553 1 134555666666666665433222221 24555666
Q ss_pred ecCC
Q 012173 229 VNGC 232 (469)
Q Consensus 229 i~~C 232 (469)
++++
T Consensus 507 Ls~N 510 (606)
T 3t6q_A 507 LSHN 510 (606)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 5555
No 45
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=180.97 Aligned_cols=227 Identities=15% Similarity=0.179 Sum_probs=150.4
Q ss_pred CCcCcccc-hhcCCCCCCcEEeeeccCCccc-CcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCc-c
Q 012173 2 RLQLKKFP-QIVTTMKDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLE-N 78 (469)
Q Consensus 2 ~~~L~~lp-~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~-~ 78 (469)
.++++.+| ..+..+++|++|+|++|+++.+ |..++.+++|++|+|++|. +..+|.. .+++|++|++++|...+ .
T Consensus 30 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L~~N~l~~~~ 106 (520)
T 2z7x_B 30 QNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCH--PTVNLKHLDLSFNAFDALP 106 (520)
T ss_dssp SSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC--CCCCCSEEECCSSCCSSCC
T ss_pred CCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCcc--ccCCccEEeccCCcccccc
Confidence 35666666 4677888889999988888876 6678888888888888876 5678775 78888888888876554 4
Q ss_pred ccccccCCCCcCEEeccCcCCCC--------------------------CCccccC------------------------
Q 012173 79 VPDTLGQVESLEELDISETAVRR--------------------------PPSSIFL------------------------ 108 (469)
Q Consensus 79 lp~~l~~l~~L~~L~L~~~~i~~--------------------------lp~~l~~------------------------ 108 (469)
+|..++++++|++|++++|.+.. .|..+..
T Consensus 107 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~ 186 (520)
T 2z7x_B 107 ICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSV 186 (520)
T ss_dssp CCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCC
T ss_pred chhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhh
Confidence 67778888888888887775531 1222222
Q ss_pred --Cc---------------------------------------------------------CCceeeccCCCC---CCCc
Q 012173 109 --MK---------------------------------------------------------NLRTLSLFGCNG---PPSW 126 (469)
Q Consensus 109 --l~---------------------------------------------------------~L~~L~l~~~~~---~~~~ 126 (469)
++ +|++|++++|.. ....
T Consensus 187 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 266 (520)
T 2z7x_B 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR 266 (520)
T ss_dssp TTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCC
T ss_pred hcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccc
Confidence 22 344444444431 1110
Q ss_pred cC----c--ccccccC--------------------------CccccccccCCCCCCCCCCCEEEccCCCCCCCCCCCCC
Q 012173 127 HL----H--LPFNLMG--------------------------KSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDI 174 (469)
Q Consensus 127 ~~----~--~~~~~~~--------------------------~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l 174 (469)
.. . ..+..+. ...+.... ......+++|++|++++|.+. +.+|..+
T Consensus 267 ~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~ 344 (520)
T 2z7x_B 267 DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH-MLCPSKISPFLHLDFSNNLLT-DTVFENC 344 (520)
T ss_dssp CCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCC-CCCCSSCCCCCEEECCSSCCC-TTTTTTC
T ss_pred hhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccc-ccchhhCCcccEEEeECCccC-hhhhhhh
Confidence 00 0 0000000 00000000 001267889999999999886 5678888
Q ss_pred CCCCCCcEEEcCCCCCcc---cCccccCCCCcCEEeccCCcccCcCCC----CCCCccEEEecCCC
Q 012173 175 GNLHSLNELYLSKNNFVT---LPASINSLLNLKELEMEDCKRLQSLPQ----LPPNIIFVKVNGCS 233 (469)
Q Consensus 175 ~~l~~L~~L~L~~n~l~~---lp~~i~~l~~L~~L~L~~c~~L~~lp~----lp~~L~~L~i~~C~ 233 (469)
+.+++|+.|++++|+++. +|..+..+++|++|++++|.....+|. ..++|+.|++++|.
T Consensus 345 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence 999999999999999985 456788899999999999875543552 24688888888874
No 46
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=1e-17 Score=159.29 Aligned_cols=188 Identities=26% Similarity=0.326 Sum_probs=155.5
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccCc-ccCCCCCCCEEeccCCCCCcccCcc-CCCCCCCCEEEeeCCCCCccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNLARVPSS-INGLKSPKTLNLSGCCKLENV 79 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~-i~~L~sL~~L~Ls~c~~l~~l 79 (469)
.++|+.+|..+. ++|++|+|++++++.++. .++.+++|++|+|++|. +..+|.. +.++++|++|++++|......
T Consensus 25 ~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~~ 101 (270)
T 2o6q_A 25 SKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALP 101 (270)
T ss_dssp TSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCCC
T ss_pred CCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcCC
Confidence 367888998664 789999999999998875 78999999999999987 5667665 478999999999997544333
Q ss_pred cccccCCCCcCEEeccCcCCCCCCc-cccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEE
Q 012173 80 PDTLGQVESLEELDISETAVRRPPS-SIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKL 158 (469)
Q Consensus 80 p~~l~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 158 (469)
+..+..+++|++|++++|.+..++. .+..+++|++|++++|... ...+..+..+++|+.|
T Consensus 102 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-------------------~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-------------------SLPKGVFDKLTSLKEL 162 (270)
T ss_dssp TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------CCCTTTTTTCTTCCEE
T ss_pred HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-------------------ccCHhHccCCccccee
Confidence 4557889999999999999998865 4688999999999998621 1113447889999999
Q ss_pred EccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCcc-ccCCCCcCEEeccCCc
Q 012173 159 DLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPAS-INSLLNLKELEMEDCK 212 (469)
Q Consensus 159 ~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 212 (469)
++++|.+.. ..+..+..+++|+.|+|++|.++.+|.. +..+++|+.|++++|+
T Consensus 163 ~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 163 RLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp ECCSSCCSC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EecCCcCcE-eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 999999863 3344688899999999999999998874 6789999999999985
No 47
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=2.1e-18 Score=179.38 Aligned_cols=115 Identities=23% Similarity=0.163 Sum_probs=101.6
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccC-cccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVP-SSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVP 80 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp 80 (469)
.++|+.+|..+. ++|++|+|++|.+..++ ..++.+++|++|+|++|......|..+.++++|++|++++| .+..+|
T Consensus 9 ~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp 85 (520)
T 2z7x_B 9 KNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKIS 85 (520)
T ss_dssp TSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEE
T ss_pred CCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecC
Confidence 468899998775 89999999999999886 57999999999999999855555888999999999999997 566888
Q ss_pred ccccCCCCcCEEeccCcCCCC--CCccccCCcCCceeeccCCC
Q 012173 81 DTLGQVESLEELDISETAVRR--PPSSIFLMKNLRTLSLFGCN 121 (469)
Q Consensus 81 ~~l~~l~~L~~L~L~~~~i~~--lp~~l~~l~~L~~L~l~~~~ 121 (469)
.. .+++|++|++++|.+.. +|..++.+++|++|++++|.
T Consensus 86 ~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 86 CH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp CC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred cc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc
Confidence 77 79999999999999986 57899999999999998875
No 48
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=1.4e-18 Score=168.52 Aligned_cols=187 Identities=23% Similarity=0.394 Sum_probs=151.5
Q ss_pred CCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEe
Q 012173 14 TMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELD 93 (469)
Q Consensus 14 ~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 93 (469)
.+++|++|+++++.+..++ .++.+++|++|++++|. +..++. +..+++|++|++++|. +..++ .++.+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEE
Confidence 4789999999999999887 58999999999999986 667776 8899999999999975 56665 688899999999
Q ss_pred ccCcCCCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCCCCCC
Q 012173 94 ISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSD 173 (469)
Q Consensus 94 L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~ 173 (469)
+++|.+..++. +..+++|++|++++|.... .+.+..+++|+.|++++|.+.+ ++.
T Consensus 114 l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~---------------------~~~l~~l~~L~~L~l~~n~l~~--~~~- 168 (308)
T 1h6u_A 114 LTSTQITDVTP-LAGLSNLQVLYLDLNQITN---------------------ISPLAGLTNLQYLSIGNAQVSD--LTP- 168 (308)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECCSSCCCC---------------------CGGGGGCTTCCEEECCSSCCCC--CGG-
T ss_pred CCCCCCCCchh-hcCCCCCCEEECCCCccCc---------------------CccccCCCCccEEEccCCcCCC--Chh-
Confidence 99999998875 8899999999999886221 1126678899999999998863 544
Q ss_pred CCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCcccCcCCCC--CCCccEEEecCC
Q 012173 174 IGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQSLPQL--PPNIIFVKVNGC 232 (469)
Q Consensus 174 l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l--p~~L~~L~i~~C 232 (469)
+..+++|+.|++++|.++.++. +..+++|++|++++|+ +..++.+ .++|+.|++.++
T Consensus 169 l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTNQ 227 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEEE
T ss_pred hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCc-cCccccccCCCCCCEEEccCC
Confidence 8889999999999999998875 7889999999999984 3444322 246666666554
No 49
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.79 E-value=3.9e-18 Score=167.95 Aligned_cols=220 Identities=18% Similarity=0.288 Sum_probs=156.4
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPD 81 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~ 81 (469)
.++++.+|. +..+++|++|++++|.++.++ .++.+++|++|++++|. +..+|. +..+++|++|++++|.....++.
T Consensus 75 ~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~ 150 (347)
T 4fmz_A 75 GNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP 150 (347)
T ss_dssp SSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG
T ss_pred CCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccc
Confidence 356778877 778999999999999998876 48999999999999977 666666 78899999999999877776654
Q ss_pred cccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCccC--cccccccCCccccccccCCCCCCCCCCCEEE
Q 012173 82 TLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHL--HLPFNLMGKSSCLVALMLPSLSGLRSLTKLD 159 (469)
Q Consensus 82 ~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 159 (469)
+..+++|++|++++|.+..++. +..+++|+.|++++|.......+ ...+..+....+.....++ +..+++|+.|+
T Consensus 151 -~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~ 227 (347)
T 4fmz_A 151 -LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLK 227 (347)
T ss_dssp -GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEE
T ss_pred -hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch-hhcCCcCCEEE
Confidence 7888999999999998887766 77888899999888763222111 1111122222222222222 56677888888
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCcccCcCCCC--CCCccEEEecCCC
Q 012173 160 LSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQSLPQL--PPNIIFVKVNGCS 233 (469)
Q Consensus 160 Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l--p~~L~~L~i~~C~ 233 (469)
+++|.+.. ++. +..+++|+.|++++|.++.++ .+..+++|+.|++++| .+..++.+ .++|+.|++.+|.
T Consensus 228 l~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 228 IGNNKITD--LSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp CCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC
T ss_pred ccCCccCC--Ccc-hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCc
Confidence 88887753 443 677778888888888777764 5677778888888777 34444433 3677777777764
No 50
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=3.3e-19 Score=173.30 Aligned_cols=197 Identities=22% Similarity=0.274 Sum_probs=150.8
Q ss_pred CCCCCcEEeeeccCCc-ccCccc--CCCCCCCEEeccCCCCCcccCccCCCC-----CCCCEEEeeCCCCCccccccccC
Q 012173 14 TMKDLSELNLDGTSIT-EVPSSI--ELLPGLELLNLNDCKNLARVPSSINGL-----KSPKTLNLSGCCKLENVPDTLGQ 85 (469)
Q Consensus 14 ~l~~L~~L~L~~~~l~-~lp~~i--~~l~~L~~L~L~~c~~l~~lp~~i~~L-----~sL~~L~Ls~c~~l~~lp~~l~~ 85 (469)
.+++|++|+|++|.++ .+|..+ +.+++|++|+|++|. +..+|..+..+ ++|++|++++|...+..|..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 6899999999999998 678876 899999999999987 44457766666 89999999998765555688999
Q ss_pred CCCcCEEeccCcCCCC---CCccc--cCCcCCceeeccCCCCCCCccCcccccccCCccccccccC-CCCCCCCCCCEEE
Q 012173 86 VESLEELDISETAVRR---PPSSI--FLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALML-PSLSGLRSLTKLD 159 (469)
Q Consensus 86 l~~L~~L~L~~~~i~~---lp~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~ 159 (469)
+++|++|++++|.+.. +|..+ ..+++|++|++++|..... ..++ ..+..+++|+.|+
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------------~~~~~~~~~~l~~L~~L~ 234 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP-----------------SGVCSALAAARVQLQGLD 234 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH-----------------HHHHHHHHHTTCCCSEEE
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch-----------------HHHHHHHHhcCCCCCEEE
Confidence 9999999999998753 34444 7899999999999862210 0011 1223568899999
Q ss_pred ccCCCCCCCCCC-CCCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCcccCcCCCC--CCCccEEEecCC
Q 012173 160 LSDCGLGEGAIP-SDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQSLPQL--PPNIIFVKVNGC 232 (469)
Q Consensus 160 Ls~~~l~~~~~p-~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l--p~~L~~L~i~~C 232 (469)
+++|.+.. ..| ..+..+++|+.|+|++|.++.+|..+. ++|++|++++|+ ++.+|.+ .++|+.|++.+.
T Consensus 235 Ls~N~l~~-~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~-l~~~p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 235 LSHNSLRD-AAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNR-LDRNPSPDELPQVGNLSLKGN 306 (312)
T ss_dssp CTTSCCCS-SCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSC-CCSCCCTTTSCEEEEEECTTC
T ss_pred CCCCcCCc-ccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCC-CCCChhHhhCCCCCEEeccCC
Confidence 99998863 333 456668899999999999999988776 899999999974 5555553 245666666553
No 51
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=1.3e-18 Score=168.79 Aligned_cols=178 Identities=24% Similarity=0.341 Sum_probs=147.2
Q ss_pred CcCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccccc
Q 012173 3 LQLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDT 82 (469)
Q Consensus 3 ~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~ 82 (469)
++++.+|. +..+++|++|+|++|.+..++. ++.+++|++|++++|. +..+| .+..+++|++|++++|. +..++.
T Consensus 51 ~~i~~l~~-~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~~n~-l~~~~~- 124 (308)
T 1h6u_A 51 TGVTTIEG-VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLTSTQ-ITDVTP- 124 (308)
T ss_dssp SCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECTTSC-CCCCGG-
T ss_pred CCccCchh-hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEECCCCC-CCCchh-
Confidence 46777774 5678999999999999998887 9999999999999987 66666 48889999999999975 555654
Q ss_pred ccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccC
Q 012173 83 LGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSD 162 (469)
Q Consensus 83 l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~ 162 (469)
++.+++|++|++++|.+..++. +..+++|+.|++++|.... +++ +..+++|+.|++++
T Consensus 125 l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~--------------------~~~-l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 125 LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD--------------------LTP-LANLSKLTTLKADD 182 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC--------------------CGG-GTTCTTCCEEECCS
T ss_pred hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC--------------------Chh-hcCCCCCCEEECCC
Confidence 8889999999999999998876 8889999999999886211 122 67889999999999
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCc
Q 012173 163 CGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 212 (469)
Q Consensus 163 ~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 212 (469)
|.+.+ ++. +..+++|+.|+|++|.++.++. +..+++|+.|++++|+
T Consensus 183 n~l~~--~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 183 NKISD--ISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp SCCCC--CGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEE
T ss_pred CccCc--Chh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCe
Confidence 98853 443 7888999999999999998884 7889999999999975
No 52
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.79 E-value=1.2e-18 Score=182.37 Aligned_cols=210 Identities=18% Similarity=0.206 Sum_probs=169.0
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCccc-CcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVP 80 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp 80 (469)
.+.++++|..+. ++|++|+|++|+++.+ |..++.+++|++|++++|......|..+.++++|++|++++|...+..|
T Consensus 14 ~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 91 (549)
T 2z81_A 14 SRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS 91 (549)
T ss_dssp TSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred CCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH
Confidence 367899998764 8999999999999977 5679999999999999998555556789999999999999986555555
Q ss_pred ccccCCCCcCEEeccCcCCCC--CCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEE
Q 012173 81 DTLGQVESLEELDISETAVRR--PPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKL 158 (469)
Q Consensus 81 ~~l~~l~~L~~L~L~~~~i~~--lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 158 (469)
..++.+++|++|++++|.+.. .|..++.+++|++|++++|..... ..+..+..+++|++|
T Consensus 92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~------------------~~~~~~~~l~~L~~L 153 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE------------------IRRIDFAGLTSLNEL 153 (549)
T ss_dssp HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE------------------ECTTTTTTCCEEEEE
T ss_pred HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccc------------------cCHhhhhcccccCee
Confidence 569999999999999999985 467899999999999998862211 113467889999999
Q ss_pred EccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccc-cCCCCcCEEeccCCcccCc------CCCCCCCccEEEecC
Q 012173 159 DLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASI-NSLLNLKELEMEDCKRLQS------LPQLPPNIIFVKVNG 231 (469)
Q Consensus 159 ~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i-~~l~~L~~L~L~~c~~L~~------lp~lp~~L~~L~i~~ 231 (469)
++++|.+. +..|..++.+++|+.|++++|.+..+|..+ ..+++|++|++++|..-.. +....++|+.|++.+
T Consensus 154 ~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 232 (549)
T 2z81_A 154 EIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232 (549)
T ss_dssp EEEETTCC-EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEES
T ss_pred eccCCccc-ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccc
Confidence 99999986 567888999999999999999888777654 5689999999998754331 123345677777655
Q ss_pred C
Q 012173 232 C 232 (469)
Q Consensus 232 C 232 (469)
+
T Consensus 233 n 233 (549)
T 2z81_A 233 S 233 (549)
T ss_dssp C
T ss_pred c
Confidence 4
No 53
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.79 E-value=3.3e-18 Score=175.08 Aligned_cols=173 Identities=20% Similarity=0.194 Sum_probs=100.2
Q ss_pred CcCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccccc
Q 012173 3 LQLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDT 82 (469)
Q Consensus 3 ~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~ 82 (469)
++++.+| ++.+++|++|++++|.++.++ ++.+++|++|++++|. +..+| ++.+++|++|++++|. +..++
T Consensus 74 n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~-- 143 (457)
T 3bz5_A 74 NNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID-- 143 (457)
T ss_dssp SCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--
T ss_pred CcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--
Confidence 4566665 566777888888877777764 7777777777777765 44454 6677777777777754 33333
Q ss_pred ccCCCCcCEEeccCc-CCCCCCccccCCcCCceeeccCCCCCCCccCc--ccccccCCccccccccCCCCCCCCCCCEEE
Q 012173 83 LGQVESLEELDISET-AVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLH--LPFNLMGKSSCLVALMLPSLSGLRSLTKLD 159 (469)
Q Consensus 83 l~~l~~L~~L~L~~~-~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 159 (469)
++.+++|++|++++| .+..+ .+..+++|+.|++++|.... ..+. ..+..+....+....+ .++.+++|+.|+
T Consensus 144 l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~ 218 (457)
T 3bz5_A 144 VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LDVSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLD 218 (457)
T ss_dssp CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CCCTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEE
T ss_pred cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-eccccCCCCCEEECcCCcCCee--ccccCCCCCEEE
Confidence 555666666666666 33333 24555666666666554211 0000 0111111111111111 256667777777
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccC
Q 012173 160 LSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLP 194 (469)
Q Consensus 160 Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp 194 (469)
+++|++.. +| ++.+++|+.|++++|.++.+|
T Consensus 219 Ls~N~l~~--ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 219 CSSNKLTE--ID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp CCSSCCSC--CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred CcCCcccc--cC--ccccCCCCEEEeeCCcCCCcC
Confidence 77777643 55 666677777777777766554
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=2.3e-19 Score=177.38 Aligned_cols=208 Identities=19% Similarity=0.190 Sum_probs=149.7
Q ss_pred CCcCcccch-hcCCCCCCcEEeeeccCCccc-CcccCCCCCCCEEeccCCCCCcccCcc-CCCCCCCCEEEeeCCCCCcc
Q 012173 2 RLQLKKFPQ-IVTTMKDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNLARVPSS-INGLKSPKTLNLSGCCKLEN 78 (469)
Q Consensus 2 ~~~L~~lp~-~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~-i~~L~sL~~L~Ls~c~~l~~ 78 (469)
.++++.+|. .+..+++|++|+|++|.++.+ |..++.+++|++|++++|. +..+|.. +.++++|++|++++| .+..
T Consensus 61 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~ 138 (353)
T 2z80_A 61 NNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGN-PYKT 138 (353)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTC-CCSS
T ss_pred CCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCC-CCcc
Confidence 366788887 678899999999999999987 4568999999999999987 5667665 788999999999996 4556
Q ss_pred ccc--cccCCCCcCEEeccCc-CCCCC-CccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCC
Q 012173 79 VPD--TLGQVESLEELDISET-AVRRP-PSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRS 154 (469)
Q Consensus 79 lp~--~l~~l~~L~~L~L~~~-~i~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 154 (469)
+|. .++.+++|++|++++| .+..+ +..+..+++|++|++++|... +..+..+..+++
T Consensus 139 l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-------------------~~~~~~l~~l~~ 199 (353)
T 2z80_A 139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-------------------SYEPKSLKSIQN 199 (353)
T ss_dssp SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-------------------EECTTTTTTCSE
T ss_pred cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC-------------------ccCHHHHhcccc
Confidence 766 6888999999999998 46665 456888999999999987621 222445555666
Q ss_pred CCEEEccCCCCCCCCCCCC-CCCCCCCcEEEcCCCCCcc--------------------------------cCccccCCC
Q 012173 155 LTKLDLSDCGLGEGAIPSD-IGNLHSLNELYLSKNNFVT--------------------------------LPASINSLL 201 (469)
Q Consensus 155 L~~L~Ls~~~l~~~~~p~~-l~~l~~L~~L~L~~n~l~~--------------------------------lp~~i~~l~ 201 (469)
|++|++++|.+. .+|.. +..+++|+.|++++|.++. +|..+..++
T Consensus 200 L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~ 277 (353)
T 2z80_A 200 VSHLILHMKQHI--LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS 277 (353)
T ss_dssp EEEEEEECSCST--THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCT
T ss_pred CCeecCCCCccc--cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhccc
Confidence 666666666552 23332 2234555666665555543 455677888
Q ss_pred CcCEEeccCCcccCcCCCC----CCCccEEEecCCC
Q 012173 202 NLKELEMEDCKRLQSLPQL----PPNIIFVKVNGCS 233 (469)
Q Consensus 202 ~L~~L~L~~c~~L~~lp~l----p~~L~~L~i~~C~ 233 (469)
+|+.|++++|+ ++.+|.- .++|+.|++.+++
T Consensus 278 ~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 278 GLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCC
Confidence 99999999874 4566532 2566777776653
No 55
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.79 E-value=1.5e-17 Score=170.06 Aligned_cols=191 Identities=15% Similarity=0.157 Sum_probs=115.3
Q ss_pred CcCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccccc
Q 012173 3 LQLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDT 82 (469)
Q Consensus 3 ~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~ 82 (469)
++++.+| .++.+++|++|+|++|.++.+| ++.+++|++|++++|. +..+| ++++++|++|++++| .+..+|
T Consensus 52 n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L~L~~N-~l~~l~-- 122 (457)
T 3bz5_A 52 SSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTN-KLTKLD-- 122 (457)
T ss_dssp SCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEECCSS-CCSCCC--
T ss_pred CCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCCEEECCCC-cCCeec--
Confidence 4455555 3455666777777766666664 6666777777776665 44444 666677777777665 334444
Q ss_pred ccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCccCc--ccccccCCccccccccCCCCCCCCCCCEEEc
Q 012173 83 LGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLH--LPFNLMGKSSCLVALMLPSLSGLRSLTKLDL 160 (469)
Q Consensus 83 l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L 160 (469)
++.+++|++|++++|.++.++ ++.+++|++|++++|.......+. ..+..+..+.+....++ +..+++|+.|++
T Consensus 123 ~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l 198 (457)
T 3bz5_A 123 VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNC 198 (457)
T ss_dssp CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEEC
T ss_pred CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEEC
Confidence 666677777777777666653 566677777777766432221111 11122222222222232 566677777777
Q ss_pred cCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCc
Q 012173 161 SDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 212 (469)
Q Consensus 161 s~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 212 (469)
++|.+.. + .++.+++|+.|++++|+++.+| +..+++|+.|++++|+
T Consensus 199 ~~N~l~~--~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 199 DTNNITK--L--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp CSSCCSC--C--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC
T ss_pred cCCcCCe--e--ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCc
Confidence 7777643 2 3666777777777777777776 6677777777777764
No 56
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=3.3e-18 Score=162.84 Aligned_cols=190 Identities=17% Similarity=0.159 Sum_probs=152.4
Q ss_pred CcCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccccc
Q 012173 3 LQLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDT 82 (469)
Q Consensus 3 ~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~ 82 (469)
+.++.++. ++.+++|++|+|++|.+..++ .++.+++|++|++++|......+..+.++++|++|++++|......+..
T Consensus 51 ~~i~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 128 (272)
T 3rfs_A 51 SDIKSVQG-IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV 128 (272)
T ss_dssp SCCCCCTT-GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred CCcccccc-cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHH
Confidence 45666665 567999999999999999875 6899999999999998744334445789999999999998655444555
Q ss_pred ccCCCCcCEEeccCcCCCCCCcc-ccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEcc
Q 012173 83 LGQVESLEELDISETAVRRPPSS-IFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLS 161 (469)
Q Consensus 83 l~~l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls 161 (469)
++.+++|++|++++|.+..++.. +..+++|+.|++++|... +..+..+..+++|+.|+++
T Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------------------~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-------------------SLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------CCCTTTTTTCTTCCEEECC
T ss_pred hccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-------------------ccCHHHhcCCccCCEEECC
Confidence 88999999999999999988765 578999999999998621 1224456889999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCcccCcCCCC
Q 012173 162 DCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQSLPQL 220 (469)
Q Consensus 162 ~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l 220 (469)
+|.+. +..+..+..+++|+.|++++|.+. ..++.|+.|++..+.....+|..
T Consensus 190 ~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 190 QNQLK-SVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp SSCCS-CCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCT
T ss_pred CCcCC-ccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCc
Confidence 99996 445566899999999999999775 34667888888887766666653
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=7.1e-19 Score=170.96 Aligned_cols=212 Identities=18% Similarity=0.187 Sum_probs=160.9
Q ss_pred ccchhcCCCCCCcEEeeeccCCc--ccCcccC-------CCCCCCEEeccCCCCCcccCccC--CCCCCCCEEEeeCCCC
Q 012173 7 KFPQIVTTMKDLSELNLDGTSIT--EVPSSIE-------LLPGLELLNLNDCKNLARVPSSI--NGLKSPKTLNLSGCCK 75 (469)
Q Consensus 7 ~lp~~~~~l~~L~~L~L~~~~l~--~lp~~i~-------~l~~L~~L~L~~c~~l~~lp~~i--~~L~sL~~L~Ls~c~~ 75 (469)
.+|..+.. .|+.|+|+++.+. .+|..+. .+++|++|+|++|.....+|..+ ..+++|++|++++|..
T Consensus 56 ~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 133 (312)
T 1wwl_A 56 ADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133 (312)
T ss_dssp CCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC
T ss_pred ccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC
Confidence 55876653 3899999999885 4566555 79999999999998666888876 8899999999999765
Q ss_pred CccccccccCC-----CCcCEEeccCcCCCCCC-ccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCC-
Q 012173 76 LENVPDTLGQV-----ESLEELDISETAVRRPP-SSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPS- 148 (469)
Q Consensus 76 l~~lp~~l~~l-----~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 148 (469)
.+ +|..++.+ ++|++|++++|.+..++ ..++.+++|++|++++|..... ...++.
T Consensus 134 ~~-~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----------------~~~~~~~ 195 (312)
T 1wwl_A 134 AT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE-----------------RGLISAL 195 (312)
T ss_dssp SS-SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH-----------------HHHHHHS
T ss_pred cc-hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc-----------------hHHHHHH
Confidence 44 47777776 89999999999999886 7888999999999998862110 001222
Q ss_pred -CCCCCCCCEEEccCCCCCCC-CCC-CCCCCCCCCcEEEcCCCCCcccC--ccccCCCCcCEEeccCCcccCcCCC-CCC
Q 012173 149 -LSGLRSLTKLDLSDCGLGEG-AIP-SDIGNLHSLNELYLSKNNFVTLP--ASINSLLNLKELEMEDCKRLQSLPQ-LPP 222 (469)
Q Consensus 149 -l~~l~~L~~L~Ls~~~l~~~-~~p-~~l~~l~~L~~L~L~~n~l~~lp--~~i~~l~~L~~L~L~~c~~L~~lp~-lp~ 222 (469)
+..+++|++|++++|.+... .++ ..+..+++|+.|+|++|.++..+ ..+..+++|++|++++|. ++.+|. +++
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~ 274 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLPA 274 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCCS
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhccC
Confidence 36789999999999988520 122 22356789999999999999755 355678999999999985 456664 457
Q ss_pred CccEEEecCCCCCccccc
Q 012173 223 NIIFVKVNGCSSLVTLLG 240 (469)
Q Consensus 223 ~L~~L~i~~C~~L~~l~~ 240 (469)
+|+.|+++++ .++.++.
T Consensus 275 ~L~~L~Ls~N-~l~~~p~ 291 (312)
T 1wwl_A 275 KLSVLDLSYN-RLDRNPS 291 (312)
T ss_dssp EEEEEECCSS-CCCSCCC
T ss_pred CceEEECCCC-CCCCChh
Confidence 8999999876 4666543
No 58
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=7.6e-18 Score=177.04 Aligned_cols=83 Identities=13% Similarity=0.162 Sum_probs=64.2
Q ss_pred CCCCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccC---ccccCCCCcCEEeccCCcccCcCCC----CCC
Q 012173 150 SGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLP---ASINSLLNLKELEMEDCKRLQSLPQ----LPP 222 (469)
Q Consensus 150 ~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp---~~i~~l~~L~~L~L~~c~~L~~lp~----lp~ 222 (469)
..+++|+.|++++|.+. +.+|..++.+++|+.|++++|.++.++ ..+..+++|+.|++++|.....+|. ..+
T Consensus 350 ~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCC-TTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccc-cchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 57788999999999886 567788888899999999999888654 4577888999999988865443553 236
Q ss_pred CccEEEecCCC
Q 012173 223 NIIFVKVNGCS 233 (469)
Q Consensus 223 ~L~~L~i~~C~ 233 (469)
+|+.|+++++.
T Consensus 429 ~L~~L~l~~n~ 439 (562)
T 3a79_B 429 SILVLNLSSNM 439 (562)
T ss_dssp TCCEEECCSSC
T ss_pred cCCEEECCCCC
Confidence 77888877764
No 59
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=7.8e-18 Score=166.33 Aligned_cols=215 Identities=20% Similarity=0.226 Sum_probs=146.1
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccCc-ccCCCCCCCEEeccCCCCCcccCc-cCCCCCCCCEEEeeCCCCCccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNLARVPS-SINGLKSPKTLNLSGCCKLENV 79 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~-~i~~L~sL~~L~Ls~c~~l~~l 79 (469)
+++|+++|..+ .+++++|+|++|+|+.+|. .|+++++|++|+|++|..++.+|. .+.++++|+++...+++.+..+
T Consensus 18 ~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l 95 (350)
T 4ay9_X 18 ESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95 (350)
T ss_dssp STTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred CCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence 36789999876 3789999999999999986 589999999999999997787875 4678999988766666677776
Q ss_pred -cccccCCCCcCEEeccCcCCCCCCcc-ccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCC-CCCC
Q 012173 80 -PDTLGQVESLEELDISETAVRRPPSS-IFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGL-RSLT 156 (469)
Q Consensus 80 -p~~l~~l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~ 156 (469)
|..+..+++|++|++++|.+..+|.. .....++..|++.++..+.... ...+..+ ..++
T Consensus 96 ~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~------------------~~~f~~~~~~l~ 157 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE------------------RNSFVGLSFESV 157 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC------------------TTSSTTSBSSCE
T ss_pred CchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccc------------------ccchhhcchhhh
Confidence 56689999999999999999988653 3456677888887765332211 1122222 2455
Q ss_pred EEEccCCCCCCCCCCCCCCCCCCCcEEEcCC-CCCcccCcc-ccCCCCcCEEeccCCcccCcCCC-CCCCccEEEecCCC
Q 012173 157 KLDLSDCGLGEGAIPSDIGNLHSLNELYLSK-NNFVTLPAS-INSLLNLKELEMEDCKRLQSLPQ-LPPNIIFVKVNGCS 233 (469)
Q Consensus 157 ~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~-n~l~~lp~~-i~~l~~L~~L~L~~c~~L~~lp~-lp~~L~~L~i~~C~ 233 (469)
.|++++|++. .++.......+|+.|++.+ |.++.+|.. +..+++|+.|++++| .++.+|. ....|+.|.+.+|.
T Consensus 158 ~L~L~~N~i~--~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 158 ILWLNKNGIQ--EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTY 234 (350)
T ss_dssp EEECCSSCCC--EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCT
T ss_pred hhcccccccc--CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCC
Confidence 5666666653 2555444455566666653 455555543 355666666666665 3444442 24556666666666
Q ss_pred CCcccc
Q 012173 234 SLVTLL 239 (469)
Q Consensus 234 ~L~~l~ 239 (469)
+|+.++
T Consensus 235 ~l~~lP 240 (350)
T 4ay9_X 235 NLKKLP 240 (350)
T ss_dssp TCCCCC
T ss_pred CcCcCC
Confidence 666555
No 60
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.77 E-value=2.4e-17 Score=173.21 Aligned_cols=115 Identities=22% Similarity=0.215 Sum_probs=89.0
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccC-cccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVP-SSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVP 80 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp 80 (469)
.++|+.+|..+. ++|++|+|++|.++.++ ..++.+++|++|+|++|......|..+.++++|++|++++|. +..+|
T Consensus 40 ~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp 116 (562)
T 3a79_B 40 NRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNIS 116 (562)
T ss_dssp TSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEEC
T ss_pred CCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccC
Confidence 356778887654 78888888888888775 578888888888888886444446678888888888888864 56777
Q ss_pred ccccCCCCcCEEeccCcCCCCCC--ccccCCcCCceeeccCCC
Q 012173 81 DTLGQVESLEELDISETAVRRPP--SSIFLMKNLRTLSLFGCN 121 (469)
Q Consensus 81 ~~l~~l~~L~~L~L~~~~i~~lp--~~l~~l~~L~~L~l~~~~ 121 (469)
.. .+++|++|++++|.+..++ ..++++++|++|++++|.
T Consensus 117 ~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 117 CC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp SC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred cc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence 66 6888888888888887654 678888888888888765
No 61
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=1.7e-17 Score=156.01 Aligned_cols=175 Identities=21% Similarity=0.246 Sum_probs=141.6
Q ss_pred CCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEecc
Q 012173 16 KDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDIS 95 (469)
Q Consensus 16 ~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 95 (469)
.+.++++++++.++.+|..+. ++|+.|+|++|......|..+.++++|++|++++|......|..+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 457889999999999998765 689999999988555556678899999999999976655556668899999999999
Q ss_pred CcCCCCCCc-cccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCCCCCCC
Q 012173 96 ETAVRRPPS-SIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDI 174 (469)
Q Consensus 96 ~~~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l 174 (469)
+|.+..+|. .+..+++|++|++++|... ...+..+..+++|+.|++++|.+. +..+..+
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------------------~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~ 151 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLK-------------------SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAF 151 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCC-------------------CcChhHhccCCcccEEECcCCcCC-ccCHHHc
Confidence 999998864 4578999999999987621 111334678899999999999985 3333468
Q ss_pred CCCCCCcEEEcCCCCCcccCc-cccCCCCcCEEeccCCc
Q 012173 175 GNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCK 212 (469)
Q Consensus 175 ~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~ 212 (469)
+.+++|+.|+|++|.++.+|. .+..+++|+.|++++|+
T Consensus 152 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 889999999999999998876 57788999999999875
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=2.6e-18 Score=167.38 Aligned_cols=210 Identities=16% Similarity=0.218 Sum_probs=130.5
Q ss_pred hcCCCCCCcEEeeeccCCcccC-cccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCc
Q 012173 11 IVTTMKDLSELNLDGTSITEVP-SSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESL 89 (469)
Q Consensus 11 ~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L 89 (469)
.+..+++|++|+|++|.++.++ ..++.+++|++|+|++|. +..++. +..+++|++|++++|. +..++ ..++|
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~----~~~~L 101 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSI 101 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSSE-EEEEE----ECTTC
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCCc-ccccc----CCCCc
Confidence 3445667888888888877664 467788888888888876 333333 6777888888887763 33333 23566
Q ss_pred CEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCcc--C--cccccccCCccc-cccccCCCC-CCCCCCCEEEccCC
Q 012173 90 EELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWH--L--HLPFNLMGKSSC-LVALMLPSL-SGLRSLTKLDLSDC 163 (469)
Q Consensus 90 ~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~--~--~~~~~~~~~~~~-~~~~~~~~l-~~l~~L~~L~Ls~~ 163 (469)
++|++++|.+..++.. .+++|++|++++|....... + ...+..+..+.+ +....+..+ ..+++|++|++++|
T Consensus 102 ~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 102 ETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp CEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 6666666666554432 24556666666554221100 0 001111111111 122223333 35788999999999
Q ss_pred CCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCcccCcCCCC---CCCccEEEecCCC
Q 012173 164 GLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQSLPQL---PPNIIFVKVNGCS 233 (469)
Q Consensus 164 ~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~i~~C~ 233 (469)
.+.. ++. ...+++|+.|+|++|.++.+|..+..+++|+.|++++| .++.+|.. .++|+.|++.+++
T Consensus 180 ~l~~--~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 180 FIYD--VKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CCCE--EEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred cCcc--ccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC
Confidence 8853 443 33588899999999999988888888899999999987 45555542 2567777776654
No 63
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=4.8e-18 Score=158.41 Aligned_cols=187 Identities=20% Similarity=0.237 Sum_probs=152.6
Q ss_pred CCcCcccch-hcCCCCCCcEEeeeccC-CcccCc-ccCCCCCCCEEeccCCCCCcccC-ccCCCCCCCCEEEeeCCCCCc
Q 012173 2 RLQLKKFPQ-IVTTMKDLSELNLDGTS-ITEVPS-SIELLPGLELLNLNDCKNLARVP-SSINGLKSPKTLNLSGCCKLE 77 (469)
Q Consensus 2 ~~~L~~lp~-~~~~l~~L~~L~L~~~~-l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp-~~i~~L~sL~~L~Ls~c~~l~ 77 (469)
.++++.+|. .++.+++|++|++++|. ++.++. .++.+++|++|++++|..+..+| ..+.++++|++|++++|. +.
T Consensus 40 ~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~ 118 (239)
T 2xwt_C 40 ETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LK 118 (239)
T ss_dssp SCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CC
T ss_pred CCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cc
Confidence 467888887 67889999999999996 998875 68999999999999844577776 457889999999999974 56
Q ss_pred cccccccCCCCcC---EEeccCc-CCCCCCc-cccCCcCCc-eeeccCCCCCCCccCcccccccCCccccccccCCCCCC
Q 012173 78 NVPDTLGQVESLE---ELDISET-AVRRPPS-SIFLMKNLR-TLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSG 151 (469)
Q Consensus 78 ~lp~~l~~l~~L~---~L~L~~~-~i~~lp~-~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 151 (469)
.+|. ++.+++|+ +|++++| .+..+|. .+..+++|+ .|++++|... .++.....
T Consensus 119 ~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~--------------------~i~~~~~~ 177 (239)
T 2xwt_C 119 MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT--------------------SVQGYAFN 177 (239)
T ss_dssp SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC--------------------EECTTTTT
T ss_pred cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc--------------------ccCHhhcC
Confidence 6887 88888888 9999999 9998875 478899999 9999987621 12333333
Q ss_pred CCCCCEEEccCCC-CCCCCCCCCCCCC-CCCcEEEcCCCCCcccCccccCCCCcCEEeccCCcc
Q 012173 152 LRSLTKLDLSDCG-LGEGAIPSDIGNL-HSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKR 213 (469)
Q Consensus 152 l~~L~~L~Ls~~~-l~~~~~p~~l~~l-~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~ 213 (469)
.++|+.|++++|. +. ...+..+..+ ++|+.|++++|.++.+|.. .+++|+.|+++++..
T Consensus 178 ~~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 178 GTKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp TCEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC--
T ss_pred CCCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCccC
Confidence 3799999999995 75 3335568888 9999999999999999876 789999999998764
No 64
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.76 E-value=2.4e-17 Score=181.33 Aligned_cols=118 Identities=19% Similarity=0.288 Sum_probs=68.4
Q ss_pred cCccc-chhcCCCCCCcEEeeecc-CCccc-CcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccc
Q 012173 4 QLKKF-PQIVTTMKDLSELNLDGT-SITEV-PSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVP 80 (469)
Q Consensus 4 ~L~~l-p~~~~~l~~L~~L~L~~~-~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp 80 (469)
+++.+ |..++++++|++|+|++| .+..+ |..++++++|++|+|++|......|..+.++++|++|++++|...+.+|
T Consensus 35 ~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~ 114 (844)
T 3j0a_A 35 YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVL 114 (844)
T ss_dssp CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCS
T ss_pred cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccc
Confidence 34443 334555566666666655 33344 4456666666666666655444445566666666666666655444444
Q ss_pred cc--ccCCCCcCEEeccCcCCCCCC--ccccCCcCCceeeccCCC
Q 012173 81 DT--LGQVESLEELDISETAVRRPP--SSIFLMKNLRTLSLFGCN 121 (469)
Q Consensus 81 ~~--l~~l~~L~~L~L~~~~i~~lp--~~l~~l~~L~~L~l~~~~ 121 (469)
.. ++++++|++|++++|.+..++ ..++++++|++|++++|.
T Consensus 115 ~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 115 KDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp TTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred cCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 43 666666677776666666542 346666777777666653
No 65
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.76 E-value=4.5e-18 Score=178.66 Aligned_cols=202 Identities=23% Similarity=0.234 Sum_probs=119.2
Q ss_pred chhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCcc--------------------CCCCCCCCEE
Q 012173 9 PQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSS--------------------INGLKSPKTL 68 (469)
Q Consensus 9 p~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~--------------------i~~L~sL~~L 68 (469)
|+.++.+++|+.|+++++.+..+|..+..+ +|++|++++|. +..+|.. ...+++|++|
T Consensus 275 ~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~-~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L 352 (570)
T 2z63_A 275 IDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCK-FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL 352 (570)
T ss_dssp TTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCB-CSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEE
T ss_pred hhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCc-ccccCcccccccCEEeCcCCccccccccccCCCCCEE
Confidence 344445555555555555555555555544 55555555443 2233321 1567888888
Q ss_pred EeeCCCCCcc--ccccccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCc---cC--cccccccCCccc-
Q 012173 69 NLSGCCKLEN--VPDTLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSW---HL--HLPFNLMGKSSC- 140 (469)
Q Consensus 69 ~Ls~c~~l~~--lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~---~~--~~~~~~~~~~~~- 140 (469)
++++|..... .|..+..+++|++|++++|.+..++..+..+++|++|++++|...... .+ ...+..+..+.+
T Consensus 353 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 432 (570)
T 2z63_A 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432 (570)
T ss_dssp ECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC
T ss_pred eCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc
Confidence 8888754332 266778899999999999998888877888999999999887621110 00 011111122211
Q ss_pred cccccCCCCCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCccc-CccccCCCCcCEEeccCCc
Q 012173 141 LVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL-PASINSLLNLKELEMEDCK 212 (469)
Q Consensus 141 ~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~ 212 (469)
..+..+..+..+++|++|++++|.+.++.+|..++.+++|+.|+|++|.++.+ |..+..+++|++|++++|+
T Consensus 433 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence 22333445566666666666666654334566666666666666666666654 4555666666666666653
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=5.9e-18 Score=173.05 Aligned_cols=221 Identities=20% Similarity=0.233 Sum_probs=132.2
Q ss_pred CcCcccchhcCCCCCCcEEeeeccCCc-ccCcccCCCCCC-------------CEEeccCCCCCcccCccC---------
Q 012173 3 LQLKKFPQIVTTMKDLSELNLDGTSIT-EVPSSIELLPGL-------------ELLNLNDCKNLARVPSSI--------- 59 (469)
Q Consensus 3 ~~L~~lp~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L-------------~~L~L~~c~~l~~lp~~i--------- 59 (469)
+++.++|+.++++++|++|++++|.+. .+|.+++.+.+| ++|++++|. +..+|...
T Consensus 21 n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~~~~~L~~L~l~ 99 (454)
T 1jl5_A 21 SNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPELPPHLESLVAS 99 (454)
T ss_dssp -------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCSCCTTCSEEECC
T ss_pred CchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCCCcCCCCEEEcc
Confidence 456677777777777777777777665 566666665543 555555554 33344311
Q ss_pred --------CCCCCCCEEEeeCCCCCccccccccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCccCccc
Q 012173 60 --------NGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLP 131 (469)
Q Consensus 60 --------~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 131 (469)
..+.+|++|++++| .+..+|.. .++|++|++++|.+..+| .++.+++|++|++++|....-......
T Consensus 100 ~n~l~~lp~~~~~L~~L~l~~n-~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~ 174 (454)
T 1jl5_A 100 CNSLTELPELPQSLKSLLVDNN-NLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPS 174 (454)
T ss_dssp SSCCSSCCCCCTTCCEEECCSS-CCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCCTT
T ss_pred CCcCCccccccCCCcEEECCCC-ccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCccc
Confidence 01244555555553 23333321 257888888888888888 588889999999988863221111112
Q ss_pred ccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCC
Q 012173 132 FNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC 211 (469)
Q Consensus 132 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c 211 (469)
+..+....+....++ .++.+++|+.|++++|.+.. +|... ++|+.|++++|.++.+|. +..+++|++|++++|
T Consensus 175 L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~--l~~~~---~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 175 LEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK--LPDLP---LSLESIVAGNNILEELPE-LQNLPFLTTIYADNN 247 (454)
T ss_dssp CCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS--CCCCC---TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSS
T ss_pred ccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc--CCCCc---CcccEEECcCCcCCcccc-cCCCCCCCEEECCCC
Confidence 333333333333444 68888899999999888753 55433 578888888888888884 778888888888886
Q ss_pred cccCcCCCCCCCccEEEecCCCCCccc
Q 012173 212 KRLQSLPQLPPNIIFVKVNGCSSLVTL 238 (469)
Q Consensus 212 ~~L~~lp~lp~~L~~L~i~~C~~L~~l 238 (469)
.++.+|..+++|+.|++.++. ++.+
T Consensus 248 -~l~~l~~~~~~L~~L~l~~N~-l~~l 272 (454)
T 1jl5_A 248 -LLKTLPDLPPSLEALNVRDNY-LTDL 272 (454)
T ss_dssp -CCSSCCSCCTTCCEEECCSSC-CSCC
T ss_pred -cCCcccccccccCEEECCCCc-cccc
Confidence 456677777888888887763 4433
No 67
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.75 E-value=7.3e-17 Score=164.93 Aligned_cols=177 Identities=20% Similarity=0.287 Sum_probs=90.9
Q ss_pred CCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEeccCcCCCCCCccccCCcCCceeecc
Q 012173 39 PGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLF 118 (469)
Q Consensus 39 ~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~ 118 (469)
++|++|++++|. +..+| .++++++|++|++++| .+..+|.. ..+|++|++++|.+..+| .++.+++|++|+++
T Consensus 131 ~~L~~L~L~~n~-l~~lp-~~~~l~~L~~L~l~~N-~l~~lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQ-LEKLP-ELQNSSFLKIIDVDNN-SLKKLPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECC
T ss_pred CCCCEEECcCCC-CCCCc-ccCCCCCCCEEECCCC-cCcccCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECC
Confidence 466666666654 44466 3666677777777665 34445543 246677777777666666 46667777777777
Q ss_pred CCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCcccc
Q 012173 119 GCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASIN 198 (469)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~ 198 (469)
+|....-......+..+..+.+....+| .++.+++|+.|++++|.+.. +|.. +++|+.|++++|.++.+|..
T Consensus 204 ~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~--l~~~---~~~L~~L~l~~N~l~~l~~~-- 275 (454)
T 1jl5_A 204 NNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT--LPDL---PPSLEALNVRDNYLTDLPEL-- 275 (454)
T ss_dssp SSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS--CCSC---CTTCCEEECCSSCCSCCCCC--
T ss_pred CCcCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc--cccc---ccccCEEECCCCcccccCcc--
Confidence 6652210000111222222222222333 35555555555555555532 3332 24555555555555555432
Q ss_pred CCCCcCEEeccCCcccCcCCCCCCCccEEEecCC
Q 012173 199 SLLNLKELEMEDCKRLQSLPQLPPNIIFVKVNGC 232 (469)
Q Consensus 199 ~l~~L~~L~L~~c~~L~~lp~lp~~L~~L~i~~C 232 (469)
+++|+.|++++|. ++.+|.+|++|+.|++.++
T Consensus 276 -~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N 307 (454)
T 1jl5_A 276 -PQSLTFLDVSENI-FSGLSELPPNLYYLNASSN 307 (454)
T ss_dssp -CTTCCEEECCSSC-CSEESCCCTTCCEEECCSS
T ss_pred -cCcCCEEECcCCc-cCcccCcCCcCCEEECcCC
Confidence 2455555555543 3444444555555555443
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=9.5e-18 Score=173.06 Aligned_cols=206 Identities=17% Similarity=0.212 Sum_probs=137.4
Q ss_pred CCCCcEEeeeccCCcccC-cccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEe
Q 012173 15 MKDLSELNLDGTSITEVP-SSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELD 93 (469)
Q Consensus 15 l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 93 (469)
+++|++|+|++|.++.++ ..++.+++|++|+|++|. +..+++ +..+++|++|++++| .+..+|. .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcCEEE
Confidence 348899999998888774 578888999999998877 443343 788888888888886 3444442 36777777
Q ss_pred ccCcCCCCCCccccCCcCCceeeccCCCCCCCcc--C--cccccccCCcc-ccccccCCCCC-CCCCCCEEEccCCCCCC
Q 012173 94 ISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWH--L--HLPFNLMGKSS-CLVALMLPSLS-GLRSLTKLDLSDCGLGE 167 (469)
Q Consensus 94 L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~--~--~~~~~~~~~~~-~~~~~~~~~l~-~l~~L~~L~Ls~~~l~~ 167 (469)
+++|.+..++.. .+++|+.|++++|....... + ...+..+..+. .+.+..+..+. .+++|+.|+|++|.+..
T Consensus 106 L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 106 AANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 777777665543 35667777777665321111 0 01111122222 22333455554 67889999999998853
Q ss_pred CCCCCCCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCcccCcCCCC---CCCccEEEecCCC
Q 012173 168 GAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQSLPQL---PPNIIFVKVNGCS 233 (469)
Q Consensus 168 ~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~i~~C~ 233 (469)
++. ...+++|+.|+|++|.++.+|..+..+++|+.|++++|. +..+|.. .++|+.|++.+++
T Consensus 184 --~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 184 --VKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp --EEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred --ccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCC
Confidence 333 345888999999999999888888888999999999874 4455532 2567777776654
No 69
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=4.8e-17 Score=152.89 Aligned_cols=170 Identities=19% Similarity=0.215 Sum_probs=140.6
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccCc-ccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVP 80 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp 80 (469)
.+.++.+|..+. ++|+.|+|++|.+..++. .++.+++|++|+|++|......|..+.++++|++|++++|......+
T Consensus 23 ~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 100 (251)
T 3m19_A 23 GKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL 100 (251)
T ss_dssp TCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred CCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccCh
Confidence 457889998765 799999999999997754 68999999999999988555555668899999999999976554445
Q ss_pred ccccCCCCcCEEeccCcCCCCCCcc-ccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEE
Q 012173 81 DTLGQVESLEELDISETAVRRPPSS-IFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLD 159 (469)
Q Consensus 81 ~~l~~l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 159 (469)
..++.+++|++|++++|.+..+|.. +..+++|++|++++|... ...+..+..+++|+.|+
T Consensus 101 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-------------------~~~~~~~~~l~~L~~L~ 161 (251)
T 3m19_A 101 GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-------------------SIPAGAFDKLTNLQTLS 161 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------CCCTTTTTTCTTCCEEE
T ss_pred hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-------------------ccCHHHcCcCcCCCEEE
Confidence 6678999999999999999998776 578999999999998621 11234688899999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCccc
Q 012173 160 LSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL 193 (469)
Q Consensus 160 Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l 193 (469)
+++|.+. ...+..+..+++|+.|+|++|.+..-
T Consensus 162 L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 162 LSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCSSCCS-CCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCCcCC-ccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 9999996 44455788999999999999998743
No 70
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.75 E-value=3.8e-17 Score=167.66 Aligned_cols=218 Identities=20% Similarity=0.320 Sum_probs=142.9
Q ss_pred CcCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccc--
Q 012173 3 LQLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVP-- 80 (469)
Q Consensus 3 ~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp-- 80 (469)
++++.+|. ++.+++|++|++++|.+..++. ++.+++|++|++++|. +..+|. +.++++|++|++++|.. ..++
T Consensus 78 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~~ 152 (466)
T 1o6v_A 78 NQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNTI-SDISAL 152 (466)
T ss_dssp SCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEEE-CCCGGG
T ss_pred CccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCcc-CCChhh
Confidence 56677776 6778888888888888887766 7888888888888875 555554 67777777777777642 2222
Q ss_pred ------------------ccccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCccC--cccccccCCccc
Q 012173 81 ------------------DTLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHL--HLPFNLMGKSSC 140 (469)
Q Consensus 81 ------------------~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~~~~~ 140 (469)
..++++++|++|++++|.+..++. +..+++|++|++++|........ ...+..+....+
T Consensus 153 ~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 231 (466)
T 1o6v_A 153 SGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN 231 (466)
T ss_dssp TTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSS
T ss_pred ccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCcccccccccccCCCCEEECCCC
Confidence 126677888889999888887753 77888888888888764322111 111122222222
Q ss_pred cccccCCCCCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCcccCcCCCC
Q 012173 141 LVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQSLPQL 220 (469)
Q Consensus 141 ~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l 220 (469)
.... .+.+..+++|+.|++++|.+.. ++. +..+++|+.|++++|.++.++. +..+++|+.|++++|+ ++.++.+
T Consensus 232 ~l~~-~~~l~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~ 305 (466)
T 1o6v_A 232 QLKD-IGTLASLTNLTDLDLANNQISN--LAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQ-LEDISPI 305 (466)
T ss_dssp CCCC-CGGGGGCTTCSEEECCSSCCCC--CGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CSCCGGG
T ss_pred Cccc-chhhhcCCCCCEEECCCCcccc--chh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCc-ccCchhh
Confidence 2222 1345667778888888887753 332 6777778888888887777665 6677777777777764 3333322
Q ss_pred --CCCccEEEecCC
Q 012173 221 --PPNIIFVKVNGC 232 (469)
Q Consensus 221 --p~~L~~L~i~~C 232 (469)
.++|+.|++.+|
T Consensus 306 ~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 306 SNLKNLTYLTLYFN 319 (466)
T ss_dssp GGCTTCSEEECCSS
T ss_pred cCCCCCCEEECcCC
Confidence 356777777766
No 71
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.75 E-value=7.7e-18 Score=176.23 Aligned_cols=107 Identities=21% Similarity=0.298 Sum_probs=81.9
Q ss_pred CcCcccc-hhcCCCCCCcEEeeeccCCcccCcc-cCCCCCCCEEeccCCCCCc-ccCccCCCCCCCCEEEeeCCCCCccc
Q 012173 3 LQLKKFP-QIVTTMKDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNLA-RVPSSINGLKSPKTLNLSGCCKLENV 79 (469)
Q Consensus 3 ~~L~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~l~-~lp~~i~~L~sL~~L~Ls~c~~l~~l 79 (469)
++++.+| ..++.+++|++|+|++|.+..++.. ++.+++|++|++++|.... ..|..++++++|++|++++|..++.+
T Consensus 60 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 139 (549)
T 2z81_A 60 SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139 (549)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred CCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccccc
Confidence 5666666 5678889999999999988887665 8889999999999887433 45667888899999999988767777
Q ss_pred c-ccccCCCCcCEEeccCcCCCC-CCccccCC
Q 012173 80 P-DTLGQVESLEELDISETAVRR-PPSSIFLM 109 (469)
Q Consensus 80 p-~~l~~l~~L~~L~L~~~~i~~-lp~~l~~l 109 (469)
| ..++.+++|++|++++|.+.. .|..++.+
T Consensus 140 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 140 RRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp CTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred CHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence 6 467888888888888887764 34444443
No 72
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.74 E-value=4.6e-17 Score=174.89 Aligned_cols=207 Identities=23% Similarity=0.284 Sum_probs=112.1
Q ss_pred CcCcccch-hcCCCCCCcEEeeeccCCccc-CcccCCCCCCCEEeccCCCCCcccCc-cCCCCCCCCEEEeeCCCCCccc
Q 012173 3 LQLKKFPQ-IVTTMKDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNLARVPS-SINGLKSPKTLNLSGCCKLENV 79 (469)
Q Consensus 3 ~~L~~lp~-~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~-~i~~L~sL~~L~Ls~c~~l~~l 79 (469)
++++.+|. .++++++|++|+|++|.+..+ |..++++++|++|+|++|. +..+|. .+.++++|++|++++|...+..
T Consensus 35 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 113 (680)
T 1ziw_A 35 NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNSIQKIK 113 (680)
T ss_dssp SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCEEECCCCccCccC
Confidence 44555554 355666666666666666654 4455666666666666654 444554 3666666666666665433333
Q ss_pred cccccCCCCcCEEeccCcCCCCC-CccccCCcCCceeeccCCCCCCCcc--Cc----ccccccC----------------
Q 012173 80 PDTLGQVESLEELDISETAVRRP-PSSIFLMKNLRTLSLFGCNGPPSWH--LH----LPFNLMG---------------- 136 (469)
Q Consensus 80 p~~l~~l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~l~~~~~~~~~~--~~----~~~~~~~---------------- 136 (469)
|..++++++|++|++++|.+... |..++.+++|++|++++|....... +. ..+..+.
T Consensus 114 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 193 (680)
T 1ziw_A 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGG
T ss_pred hhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhh
Confidence 34566666666666666665543 3345556666666665553211000 00 0000000
Q ss_pred -----------------------------------Cc-cccccccCCCCCCCC--CCCEEEccCCCCCCCCCCCCCCCCC
Q 012173 137 -----------------------------------KS-SCLVALMLPSLSGLR--SLTKLDLSDCGLGEGAIPSDIGNLH 178 (469)
Q Consensus 137 -----------------------------------~~-~~~~~~~~~~l~~l~--~L~~L~Ls~~~l~~~~~p~~l~~l~ 178 (469)
.. +...+..+..+..++ +|+.|++++|.+. +..|..++.++
T Consensus 194 l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~ 272 (680)
T 1ziw_A 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLP 272 (680)
T ss_dssp SSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-EECTTTTTTCT
T ss_pred hhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC-ccCcccccCcc
Confidence 00 011122233444443 3777777777764 34456677777
Q ss_pred CCcEEEcCCCCCccc-CccccCCCCcCEEeccCC
Q 012173 179 SLNELYLSKNNFVTL-PASINSLLNLKELEMEDC 211 (469)
Q Consensus 179 ~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c 211 (469)
+|+.|++++|.+..+ |..+..+++|+.|+++++
T Consensus 273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp TCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred cccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 777777777777644 335566666666666654
No 73
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.74 E-value=5.8e-17 Score=174.07 Aligned_cols=197 Identities=25% Similarity=0.301 Sum_probs=110.0
Q ss_pred CCCcEEeeeccCCccc-CcccCCCCCCCEEeccCCCCCcccC-ccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEe
Q 012173 16 KDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNLARVP-SSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELD 93 (469)
Q Consensus 16 ~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 93 (469)
++|+.|++++|++..+ |..++.+++|++|++++|.....+| ..+.++++|++|++++|......+..+..+++|+.|+
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch
Confidence 4677777777777655 4566777777777777766544454 4566677777777777654444455566667777777
Q ss_pred ccCcCCC---CCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCCCCC--
Q 012173 94 ISETAVR---RPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEG-- 168 (469)
Q Consensus 94 L~~~~i~---~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~-- 168 (469)
+++|.+. .+|..+..+++|+.|++++|... ...+..+..+++|+.|++++|.+..-
T Consensus 461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~-------------------~i~~~~~~~l~~L~~L~Ls~N~l~~~~~ 521 (680)
T 1ziw_A 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-------------------NINDDMLEGLEKLEILDLQHNNLARLWK 521 (680)
T ss_dssp CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC-------------------CCCTTTTTTCTTCCEEECCSSCCGGGGS
T ss_pred hccccccccccCCcccccCCCCCEEECCCCCCC-------------------cCChhhhccccccCEEeCCCCCccccch
Confidence 7766554 34666666777777777665421 11123344555555555555554310
Q ss_pred -CCC----CCCCCCCCCcEEEcCCCCCcccCc-cccCCCCcCEEeccCCcccCcCCCC----CCCccEEEecCC
Q 012173 169 -AIP----SDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCKRLQSLPQL----PPNIIFVKVNGC 232 (469)
Q Consensus 169 -~~p----~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~l----p~~L~~L~i~~C 232 (469)
.+| ..++.+++|+.|+|++|.++.+|. .+..+++|+.|++++| .++.+|.- .++|+.|++.++
T Consensus 522 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 522 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp TTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred hhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC
Confidence 011 124455555555555555555554 2455555555555554 23333321 145555555554
No 74
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.74 E-value=4.9e-17 Score=166.88 Aligned_cols=225 Identities=19% Similarity=0.320 Sum_probs=167.3
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPD 81 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~ 81 (469)
++.++.+|. +..+++|++|+|++|.++.++. ++.+++|++|++++|. +..++. +.++++|++|++++| .+..++.
T Consensus 55 ~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~ 129 (466)
T 1o6v_A 55 RLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLTLFNN-QITDIDP 129 (466)
T ss_dssp SSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCCGG
T ss_pred CCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCc-cccChh-hcCCCCCCEEECCCC-CCCCChH
Confidence 356777886 5679999999999999999887 9999999999999987 556665 899999999999997 4556654
Q ss_pred cccCCCCcCEEeccCcCCCCCCc--------------------cccCCcCCceeeccCCCCCCCccCc--ccccccCCcc
Q 012173 82 TLGQVESLEELDISETAVRRPPS--------------------SIFLMKNLRTLSLFGCNGPPSWHLH--LPFNLMGKSS 139 (469)
Q Consensus 82 ~l~~l~~L~~L~L~~~~i~~lp~--------------------~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~~~~~ 139 (469)
++.+++|++|++++|.+..++. .+..+++|+.|++++|.......+. ..+..+....
T Consensus 130 -~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~ 208 (466)
T 1o6v_A 130 -LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN 208 (466)
T ss_dssp -GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCS
T ss_pred -HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecC
Confidence 8899999999999998876542 2456677888888877632211111 1122222233
Q ss_pred ccccccCCCCCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCcccCcCCC
Q 012173 140 CLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQSLPQ 219 (469)
Q Consensus 140 ~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 219 (469)
+.....++ ++.+++|+.|++++|.+.+ + ..+..+++|+.|++++|.+..++. +..+++|+.|++++|. +..++.
T Consensus 209 n~l~~~~~-~~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~ 282 (466)
T 1o6v_A 209 NQISDITP-LGILTNLDELSLNGNQLKD--I-GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQ-ISNISP 282 (466)
T ss_dssp SCCCCCGG-GGGCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CCCCGG
T ss_pred Cccccccc-ccccCCCCEEECCCCCccc--c-hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCc-cCcccc
Confidence 32222222 6778999999999999864 3 467889999999999999998876 8899999999999985 334432
Q ss_pred C--CCCccEEEecCCCCCcccc
Q 012173 220 L--PPNIIFVKVNGCSSLVTLL 239 (469)
Q Consensus 220 l--p~~L~~L~i~~C~~L~~l~ 239 (469)
+ .++|+.|++.+|. ++.++
T Consensus 283 ~~~l~~L~~L~L~~n~-l~~~~ 303 (466)
T 1o6v_A 283 LAGLTALTNLELNENQ-LEDIS 303 (466)
T ss_dssp GTTCTTCSEEECCSSC-CSCCG
T ss_pred ccCCCccCeEEcCCCc-ccCch
Confidence 2 4689999998863 44433
No 75
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=3e-17 Score=157.87 Aligned_cols=170 Identities=25% Similarity=0.368 Sum_probs=143.1
Q ss_pred CCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEE
Q 012173 13 TTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEEL 92 (469)
Q Consensus 13 ~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L 92 (469)
..+++|+.|++++|.+..++. ++.+++|++|++++|. +..++. +.++++|++|++++|. +..+|. ++.+++|++|
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEE
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEE
Confidence 357899999999999998875 8999999999999987 566666 8899999999999974 555654 8899999999
Q ss_pred eccCcCCCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCCCCC
Q 012173 93 DISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPS 172 (469)
Q Consensus 93 ~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~ 172 (469)
++++|.+..++ .+..+++|+.|++++|.... .+.+..+++|+.|++++|.+.+ ++.
T Consensus 118 ~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~---------------------~~~l~~l~~L~~L~L~~N~l~~--~~~ 173 (291)
T 1h6t_A 118 SLEHNGISDIN-GLVHLPQLESLYLGNNKITD---------------------ITVLSRLTKLDTLSLEDNQISD--IVP 173 (291)
T ss_dssp ECTTSCCCCCG-GGGGCTTCCEEECCSSCCCC---------------------CGGGGGCTTCSEEECCSSCCCC--CGG
T ss_pred ECCCCcCCCCh-hhcCCCCCCEEEccCCcCCc---------------------chhhccCCCCCEEEccCCcccc--chh
Confidence 99999999874 68889999999999886211 2446678999999999999863 444
Q ss_pred CCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCcc
Q 012173 173 DIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKR 213 (469)
Q Consensus 173 ~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~ 213 (469)
+..+++|+.|++++|.++.+|. +..+++|+.|++++|+-
T Consensus 174 -l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 174 -LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp -GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEE
T ss_pred -hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcc
Confidence 8889999999999999999875 88899999999999753
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=161.68 Aligned_cols=197 Identities=18% Similarity=0.169 Sum_probs=148.8
Q ss_pred CCCCcEEeeeccCCc-ccCccc--CCCCCCCEEeccCCCCCcccC----ccCCCCCCCCEEEeeCCCCCccccccccCCC
Q 012173 15 MKDLSELNLDGTSIT-EVPSSI--ELLPGLELLNLNDCKNLARVP----SSINGLKSPKTLNLSGCCKLENVPDTLGQVE 87 (469)
Q Consensus 15 l~~L~~L~L~~~~l~-~lp~~i--~~l~~L~~L~L~~c~~l~~lp----~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~ 87 (469)
+++|++|++++|.+. ..|..+ +.+++|++|+|++|......| ..+..+++|++|++++|......|..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 567999999999988 456666 899999999999988655444 3356789999999999877666667889999
Q ss_pred CcCEEeccCcCCCC---C--CccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCC-CCCCCCCCCEEEcc
Q 012173 88 SLEELDISETAVRR---P--PSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLP-SLSGLRSLTKLDLS 161 (469)
Q Consensus 88 ~L~~L~L~~~~i~~---l--p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~Ls 161 (469)
+|++|++++|.+.. + +..+..+++|++|++++|..... ...+. .+..+++|++|+++
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-----------------~~~~~~l~~~l~~L~~L~Ls 232 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-----------------TGVCAALAAAGVQPHSLDLS 232 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-----------------HHHHHHHHHHTCCCSSEECT
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-----------------HHHHHHHHhcCCCCCEEECC
Confidence 99999999998753 3 23346889999999999863110 00011 13467899999999
Q ss_pred CCCCCCCCCCCCCCCC---CCCcEEEcCCCCCcccCccccCCCCcCEEeccCCcccCcCCC--CCCCccEEEecCC
Q 012173 162 DCGLGEGAIPSDIGNL---HSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQSLPQ--LPPNIIFVKVNGC 232 (469)
Q Consensus 162 ~~~l~~~~~p~~l~~l---~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~--lp~~L~~L~i~~C 232 (469)
+|.+. +..|..+..+ ++|+.|+|++|.++.+|..+. ++|+.|++++|+ ++.+|. -.++|+.|++.+.
T Consensus 233 ~N~l~-~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 233 HNSLR-ATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNR-LNRAPQPDELPEVDNLTLDGN 304 (310)
T ss_dssp TSCCC-CCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCC-CCSCCCTTSCCCCSCEECSST
T ss_pred CCCCC-ccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCc-CCCCchhhhCCCccEEECcCC
Confidence 99986 4447666666 699999999999999988774 799999999975 444443 2356777776654
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.73 E-value=9e-18 Score=162.98 Aligned_cols=203 Identities=15% Similarity=0.128 Sum_probs=146.8
Q ss_pred CCCcEEeeeccCCcc-----cCcccCCCCCCCEEeccCCCCCcccCccC--CCCCCCCEEEeeCCCCCcccc----cccc
Q 012173 16 KDLSELNLDGTSITE-----VPSSIELLPGLELLNLNDCKNLARVPSSI--NGLKSPKTLNLSGCCKLENVP----DTLG 84 (469)
Q Consensus 16 ~~L~~L~L~~~~l~~-----lp~~i~~l~~L~~L~L~~c~~l~~lp~~i--~~L~sL~~L~Ls~c~~l~~lp----~~l~ 84 (469)
..++.|.+.++.+.. +.. ...+++|++|++++|......|..+ ..+++|++|++++|......+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 457788888876652 222 2234679999999988777778777 889999999999987655443 3345
Q ss_pred CCCCcCEEeccCcCCCCCC-ccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCC
Q 012173 85 QVESLEELDISETAVRRPP-SSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDC 163 (469)
Q Consensus 85 ~l~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~ 163 (469)
.+++|++|++++|.+..++ ..+..+++|++|++++|...... .......+..+++|++|++++|
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---------------~~~~~~~~~~l~~L~~L~Ls~N 207 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGER---------------GLMAALCPHKFPAIQNLALRNT 207 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHH---------------HHHTTSCTTSSCCCCSCBCCSS
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccch---------------hhhHHHhhhcCCCCCEEECCCC
Confidence 7889999999999998775 56788999999999988621100 0000223467889999999999
Q ss_pred CCCCCCCCCC----CCCCCCCcEEEcCCCCCccc-CccccCC---CCcCEEeccCCcccCcCCC-CCCCccEEEecCCCC
Q 012173 164 GLGEGAIPSD----IGNLHSLNELYLSKNNFVTL-PASINSL---LNLKELEMEDCKRLQSLPQ-LPPNIIFVKVNGCSS 234 (469)
Q Consensus 164 ~l~~~~~p~~----l~~l~~L~~L~L~~n~l~~l-p~~i~~l---~~L~~L~L~~c~~L~~lp~-lp~~L~~L~i~~C~~ 234 (469)
++.. ++.. ++.+++|++|+|++|.++.+ |..+..+ ++|++|++++|. ++.+|. ++++|+.|+++++.
T Consensus 208 ~l~~--l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N~- 283 (310)
T 4glp_A 208 GMET--PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSNR- 283 (310)
T ss_dssp CCCC--HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSCC-
T ss_pred CCCc--hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCCc-
Confidence 8842 4432 46778999999999999876 7766666 699999999875 446664 56789999988763
Q ss_pred Cccc
Q 012173 235 LVTL 238 (469)
Q Consensus 235 L~~l 238 (469)
++.+
T Consensus 284 l~~~ 287 (310)
T 4glp_A 284 LNRA 287 (310)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 4444
No 78
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=2.3e-16 Score=166.65 Aligned_cols=206 Identities=23% Similarity=0.247 Sum_probs=138.7
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPD 81 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~ 81 (469)
+|+|+.+|. .+++|++|+|++|.|+.+|. .+++|++|+|++|. +..+|. .+++|++|++++| .+..+|.
T Consensus 70 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N-~l~~lp~ 138 (622)
T 3g06_A 70 DNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGN-QLTSLPV 138 (622)
T ss_dssp SCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSS-CCSCCCC
T ss_pred CCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCC-CCCcCCC
Confidence 467778887 46889999999998888886 67888888888875 666665 4567777777765 3555665
Q ss_pred cccCCCCcCEEeccCcCCCCCCcccc-----------------CCcCCceeeccCCCCCCCccCcccccccCCccccccc
Q 012173 82 TLGQVESLEELDISETAVRRPPSSIF-----------------LMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVAL 144 (469)
Q Consensus 82 ~l~~l~~L~~L~L~~~~i~~lp~~l~-----------------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (469)
. +++|++|++++|.+..+|..+. .+++|+.|++++|....-......+..+....+....
T Consensus 139 ~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~ 215 (622)
T 3g06_A 139 L---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTS 215 (622)
T ss_dssp C---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS
T ss_pred C---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccc
Confidence 4 3667777777776665544322 2266777777766532111111112222233333333
Q ss_pred cCCCCCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCcccCcCCCC---C
Q 012173 145 MLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQSLPQL---P 221 (469)
Q Consensus 145 ~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---p 221 (469)
++. .+++|+.|++++|.+.. +| ..+++|+.|+|++|.++.+|. .+++|+.|+|++| .++.+|.. .
T Consensus 216 l~~---~~~~L~~L~Ls~N~L~~--lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l 283 (622)
T 3g06_A 216 LPA---LPSGLKELIVSGNRLTS--LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHL 283 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGS
T ss_pred cCC---CCCCCCEEEccCCccCc--CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhc
Confidence 333 24789999999999853 66 556899999999999999997 6789999999998 45566532 2
Q ss_pred CCccEEEecCCC
Q 012173 222 PNIIFVKVNGCS 233 (469)
Q Consensus 222 ~~L~~L~i~~C~ 233 (469)
++|+.|++.+++
T Consensus 284 ~~L~~L~L~~N~ 295 (622)
T 3g06_A 284 SSETTVNLEGNP 295 (622)
T ss_dssp CTTCEEECCSCC
T ss_pred cccCEEEecCCC
Confidence 567777777664
No 79
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.73 E-value=4.7e-17 Score=170.91 Aligned_cols=118 Identities=19% Similarity=0.284 Sum_probs=85.5
Q ss_pred CcCcccch-hcCCCCCCcEEeeeccCCcccC-cccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccc
Q 012173 3 LQLKKFPQ-IVTTMKDLSELNLDGTSITEVP-SSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVP 80 (469)
Q Consensus 3 ~~L~~lp~-~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp 80 (469)
++++.++. .+..+++|++|+|++|++..++ ..++++++|++|+|++|......|..+.++++|++|++++|. +..++
T Consensus 38 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~ 116 (570)
T 2z63_A 38 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLE 116 (570)
T ss_dssp CCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCST
T ss_pred CccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccc-cccCC
Confidence 45555553 5667788888888888777764 457778888888888876333344667778888888888763 44444
Q ss_pred c-cccCCCCcCEEeccCcCCCC--CCccccCCcCCceeeccCCC
Q 012173 81 D-TLGQVESLEELDISETAVRR--PPSSIFLMKNLRTLSLFGCN 121 (469)
Q Consensus 81 ~-~l~~l~~L~~L~L~~~~i~~--lp~~l~~l~~L~~L~l~~~~ 121 (469)
. .++++++|++|++++|.+.. +|..++++++|++|++++|.
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp TCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred CccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence 3 57788888888888888775 57888888888888888775
No 80
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.73 E-value=4.1e-17 Score=179.55 Aligned_cols=189 Identities=22% Similarity=0.226 Sum_probs=150.1
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCccc-CcccCCCCCCCEEeccCCCCCccc-CccCCCCCCCCEEEeeCCCCCccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNLARV-PSSINGLKSPKTLNLSGCCKLENV 79 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~l~~l-p~~i~~L~sL~~L~Ls~c~~l~~l 79 (469)
..+++.+|. + .++|++|+|++|.|+.+ |..++++++|++|+|++|.....+ |..+.++++|++|+|++|......
T Consensus 13 ~~~L~~vP~-l--p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 13 FCNLTQVPQ-V--LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH 89 (844)
T ss_dssp CCCSSCCCS-S--CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred CCCCCCCCC-C--CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence 467899998 3 58999999999999977 678999999999999999777777 778999999999999998776667
Q ss_pred cccccCCCCcCEEeccCcCCCC-CCcc--ccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCC
Q 012173 80 PDTLGQVESLEELDISETAVRR-PPSS--IFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLT 156 (469)
Q Consensus 80 p~~l~~l~~L~~L~L~~~~i~~-lp~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 156 (469)
|..++++++|++|++++|.+.. +|.. +..+++|++|++++|..... ..++.++.+++|+
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~------------------~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL------------------YLHPSFGKLNSLK 151 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC------------------CCCGGGGTCSSCC
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc------------------ccchhHhhCCCCC
Confidence 9999999999999999999986 4554 88999999999999873211 0124567788888
Q ss_pred EEEccCCCCCCCCCCCCCCCC--CCCcEEEcCCCCCcc-cCccccCCCC------cCEEeccCCc
Q 012173 157 KLDLSDCGLGEGAIPSDIGNL--HSLNELYLSKNNFVT-LPASINSLLN------LKELEMEDCK 212 (469)
Q Consensus 157 ~L~Ls~~~l~~~~~p~~l~~l--~~L~~L~L~~n~l~~-lp~~i~~l~~------L~~L~L~~c~ 212 (469)
+|++++|.+. +..+..+..+ ++|+.|++++|.+.. .|..+..+++ |+.|++++|.
T Consensus 152 ~L~Ls~N~i~-~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 215 (844)
T 3j0a_A 152 SIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215 (844)
T ss_dssp EEEEESSCCC-CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC
T ss_pred EEECCCCcCC-eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCc
Confidence 8888888875 4456666665 778888888887763 4444444444 7788887763
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.71 E-value=4.7e-19 Score=173.67 Aligned_cols=205 Identities=15% Similarity=0.167 Sum_probs=146.0
Q ss_pred hhcCCC--CCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcc-cCccCCCCCCCCEEEeeCCCCCccccccccCC
Q 012173 10 QIVTTM--KDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLAR-VPSSINGLKSPKTLNLSGCCKLENVPDTLGQV 86 (469)
Q Consensus 10 ~~~~~l--~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~-lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l 86 (469)
..+..+ ++++.|+++++.+...+..+..+++|++|++++|..... +|..+..+++|++|++++|......|..++.+
T Consensus 62 ~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~ 141 (336)
T 2ast_B 62 DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN 141 (336)
T ss_dssp HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC
T ss_pred HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcC
Confidence 334444 788888888888877766677888888888888874433 67777788888888888886555677778888
Q ss_pred CCcCEEeccCc-CCCC--CCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCC-CCCEEEccC
Q 012173 87 ESLEELDISET-AVRR--PPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLR-SLTKLDLSD 162 (469)
Q Consensus 87 ~~L~~L~L~~~-~i~~--lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~Ls~ 162 (469)
++|++|++++| .++. ++..+..+++|++|++++|..+... .++..+..++ +|++|++++
T Consensus 142 ~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-----------------~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 142 SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK-----------------HVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-----------------HHHHHHHHSCTTCCEEECCS
T ss_pred CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH-----------------HHHHHHHhcccCCCEEEeCC
Confidence 88888888888 5663 5666777888888888887322110 0123344567 888888888
Q ss_pred C--CCCCCCCCCCCCCCCCCcEEEcCCCC-Cc-ccCccccCCCCcCEEeccCCcccCc-----CCCCCCCccEEEecCC
Q 012173 163 C--GLGEGAIPSDIGNLHSLNELYLSKNN-FV-TLPASINSLLNLKELEMEDCKRLQS-----LPQLPPNIIFVKVNGC 232 (469)
Q Consensus 163 ~--~l~~~~~p~~l~~l~~L~~L~L~~n~-l~-~lp~~i~~l~~L~~L~L~~c~~L~~-----lp~lp~~L~~L~i~~C 232 (469)
| .+.+..++..+..+++|+.|++++|. ++ ..+..+..+++|++|++++|..+.. +.. .++|+.|++.+|
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~ 282 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGI 282 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTS
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhc-CCCCCEEeccCc
Confidence 8 45434456666778888888888887 44 4566777788888888888863321 111 467888888887
No 82
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=4.7e-17 Score=158.41 Aligned_cols=201 Identities=15% Similarity=0.114 Sum_probs=144.8
Q ss_pred CCcCcccc-hhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccc
Q 012173 2 RLQLKKFP-QIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVP 80 (469)
Q Consensus 2 ~~~L~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp 80 (469)
.++++.++ ..++.+++|++|+|++|.+..+++ ++.+++|++|++++|. +..+|. .++|++|++++|.. ..++
T Consensus 43 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~----~~~L~~L~l~~n~l-~~~~ 115 (317)
T 3o53_A 43 GNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETLHAANNNI-SRVS 115 (317)
T ss_dssp TSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEEE----CTTCCEEECCSSCC-SEEE
T ss_pred CCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-cccccC----CCCcCEEECCCCcc-CCcC
Confidence 35677776 578899999999999999997776 9999999999999986 555553 36777777777643 3333
Q ss_pred ccccCCCCcCEEeccCcCCCCCCc-cccCCcCCceeeccCCCCCCCc--cC---cccccccCCccccccccCCCCCCCCC
Q 012173 81 DTLGQVESLEELDISETAVRRPPS-SIFLMKNLRTLSLFGCNGPPSW--HL---HLPFNLMGKSSCLVALMLPSLSGLRS 154 (469)
Q Consensus 81 ~~l~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~l~~l~~ 154 (469)
.. .+++|++|++++|.+..++. .+..+++|++|++++|...... .+ ...+..+..+.+....+ +....+++
T Consensus 116 ~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~ 192 (317)
T 3o53_A 116 CS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAK 192 (317)
T ss_dssp EC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTT
T ss_pred cc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cccccccc
Confidence 22 25667777777777776633 5566777777777776532110 00 01122222333333333 23445899
Q ss_pred CCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCccc
Q 012173 155 LTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRL 214 (469)
Q Consensus 155 L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L 214 (469)
|++|++++|.+. .+|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|+..
T Consensus 193 L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 193 LKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCEEECCSSCCC--EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred CCEEECCCCcCC--cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 999999999995 4777899999999999999999999999999999999999998644
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=8.9e-19 Score=171.70 Aligned_cols=199 Identities=19% Similarity=0.273 Sum_probs=129.3
Q ss_pred CCcEEeeeccCCcccCcccCCC--CCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcc-ccccccCCCCcCEEe
Q 012173 17 DLSELNLDGTSITEVPSSIELL--PGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLEN-VPDTLGQVESLEELD 93 (469)
Q Consensus 17 ~L~~L~L~~~~l~~lp~~i~~l--~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~-lp~~l~~l~~L~~L~ 93 (469)
.++.|+++++.+. +..+..+ ++++.|++++|.. ...+..+.++++|++|++++|..... +|..+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l-~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFM-DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEE-CSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccc-cccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 4677777777665 3445555 6788888887663 33333466778888888887764333 666777788888888
Q ss_pred ccCcCCC-CCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCC-CCCCCCCC
Q 012173 94 ISETAVR-RPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDC-GLGEGAIP 171 (469)
Q Consensus 94 L~~~~i~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~-~l~~~~~p 171 (469)
+++|.+. ..+..+..+++|++|++++|...... .++..+..+++|++|++++| .+.+..++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~-----------------~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 187 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-----------------ALQTLLSSCSRLDELNLSWCFDFTEKHVQ 187 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-----------------HHHHHHHHCTTCCEEECCCCTTCCHHHHH
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH-----------------HHHHHHhcCCCCCEEcCCCCCCcChHHHH
Confidence 8887766 34566677788888888777422110 11223445677888888888 66533355
Q ss_pred CCCCCCC-CCcEEEcCCCC--C--cccCccccCCCCcCEEeccCCcccCc--CCCC--CCCccEEEecCCCCC
Q 012173 172 SDIGNLH-SLNELYLSKNN--F--VTLPASINSLLNLKELEMEDCKRLQS--LPQL--PPNIIFVKVNGCSSL 235 (469)
Q Consensus 172 ~~l~~l~-~L~~L~L~~n~--l--~~lp~~i~~l~~L~~L~L~~c~~L~~--lp~l--p~~L~~L~i~~C~~L 235 (469)
..+..++ +|+.|++++|. + ..+|..+..+++|+.|++++|..+.. ++.+ .++|+.|++.+|..+
T Consensus 188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260 (336)
T ss_dssp HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC
Confidence 5666777 88888888874 4 35666667778888888888764331 2211 267788888877643
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=6.2e-17 Score=166.99 Aligned_cols=201 Identities=14% Similarity=0.090 Sum_probs=142.8
Q ss_pred CCcCcccc-hhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccc
Q 012173 2 RLQLKKFP-QIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVP 80 (469)
Q Consensus 2 ~~~L~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp 80 (469)
.+++..+| ..++.+++|++|+|++|.++.+++ ++.+++|++|+|++|. +..+|. .++|++|++++|......+
T Consensus 43 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~L~~N~l~~~~~ 116 (487)
T 3oja_A 43 GNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETLHAANNNISRVSC 116 (487)
T ss_dssp SSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEECCSSCCCCEEE
T ss_pred CCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCEEECcCCcCCCCCc
Confidence 35677775 578899999999999999997766 9999999999999986 555553 2667777777754333222
Q ss_pred ccccCCCCcCEEeccCcCCCCC-CccccCCcCCceeeccCCCCCCCc--cC---cccccccCCccccccccCCCCCCCCC
Q 012173 81 DTLGQVESLEELDISETAVRRP-PSSIFLMKNLRTLSLFGCNGPPSW--HL---HLPFNLMGKSSCLVALMLPSLSGLRS 154 (469)
Q Consensus 81 ~~l~~l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~l~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~l~~l~~ 154 (469)
. .+++|+.|++++|.+..+ |..++.+++|++|++++|...... .+ ...+..+..+.+....+ +....+++
T Consensus 117 ~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~~~~l~~ 192 (487)
T 3oja_A 117 S---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAK 192 (487)
T ss_dssp C---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTT
T ss_pred c---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cccccCCC
Confidence 2 356667777777766655 345566667777777666532110 00 01122222222222222 33446899
Q ss_pred CCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCccc
Q 012173 155 LTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRL 214 (469)
Q Consensus 155 L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L 214 (469)
|+.|+|++|.+.. +|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|+..
T Consensus 193 L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 193 LKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred CCEEECCCCCCCC--CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 9999999999963 777799999999999999999999999999999999999998643
No 85
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=1.6e-16 Score=167.50 Aligned_cols=178 Identities=25% Similarity=0.366 Sum_probs=148.7
Q ss_pred CcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccccccc
Q 012173 5 LKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLG 84 (469)
Q Consensus 5 L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~ 84 (469)
+..++.. ..+++|+.|+++++.+..++. ++.+++|+.|+|++|. +..+|. +..+++|+.|+|++| .+..+| .++
T Consensus 33 i~~~~~~-~~L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~ 106 (605)
T 1m9s_A 33 VTDAVTQ-NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLK 106 (605)
T ss_dssp TTSEECH-HHHTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCT-TST
T ss_pred cccccch-hcCCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCC-CCCCCh-hhc
Confidence 3444332 458899999999999999874 8999999999999987 666666 889999999999997 455565 688
Q ss_pred CCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCC
Q 012173 85 QVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCG 164 (469)
Q Consensus 85 ~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~ 164 (469)
.+++|++|+|++|.+..++ .+..+++|+.|+|++|.... .+.+..+++|+.|+|++|.
T Consensus 107 ~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~---------------------l~~l~~l~~L~~L~Ls~N~ 164 (605)
T 1m9s_A 107 DLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD---------------------ITVLSRLTKLDTLSLEDNQ 164 (605)
T ss_dssp TCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCC---------------------CGGGGSCTTCSEEECCSSC
T ss_pred cCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCC---------------------chhhcccCCCCEEECcCCc
Confidence 9999999999999999875 58899999999999986211 2456788999999999999
Q ss_pred CCCCCCCCCCCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCccc
Q 012173 165 LGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRL 214 (469)
Q Consensus 165 l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L 214 (469)
+.. ++. +..+++|+.|+|++|.+..+| .+..+++|+.|+|++|+..
T Consensus 165 l~~--~~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 165 ISD--IVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CCC--CGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEE
T ss_pred CCC--chh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCc
Confidence 963 433 889999999999999999986 6889999999999998644
No 86
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=6.4e-17 Score=146.26 Aligned_cols=105 Identities=22% Similarity=0.279 Sum_probs=64.5
Q ss_pred CCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEe
Q 012173 14 TMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELD 93 (469)
Q Consensus 14 ~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 93 (469)
.+++|++|+++++.++.+| .+..+++|++|++++| .+..++ .+..+++|++|++++|......|..++.+++|++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 4566777777777777666 4666777777777776 344443 366667777777776654444556666666666666
Q ss_pred ccCcCCCC-CCccccCCcCCceeeccCCC
Q 012173 94 ISETAVRR-PPSSIFLMKNLRTLSLFGCN 121 (469)
Q Consensus 94 L~~~~i~~-lp~~l~~l~~L~~L~l~~~~ 121 (469)
+++|.+.. .|..+..+++|++|++++|.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 66666653 34445555555555555443
No 87
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.70 E-value=2.4e-16 Score=164.71 Aligned_cols=175 Identities=21% Similarity=0.288 Sum_probs=89.4
Q ss_pred CCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEeccC
Q 012173 17 DLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISE 96 (469)
Q Consensus 17 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 96 (469)
+|+.|+|+++.++.+|..+. ++|++|+|++|. +..+| ..+++|++|++++| .+..+|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence 66666666666666665542 566666666655 44566 23566666666665 3344655 443 666666666
Q ss_pred cCCCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCCCCCCCCC
Q 012173 97 TAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGN 176 (469)
Q Consensus 97 ~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~ 176 (469)
|.++.+|. .+++|+.|++++|...........+..+..+.+....+|. +. ++|+.|+|++|.+. .+|. +..
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~--~lp~-~~~ 200 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE--SLPA-VPV 200 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS--SCCC-CC-
T ss_pred CcCCCCCC---cCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC--chhh-HHH
Confidence 66666665 4666666666665421100000001111111111111233 22 55555555555553 2444 332
Q ss_pred CCCC-------cEEEcCCCCCcccCccccCCCCcCEEeccCCc
Q 012173 177 LHSL-------NELYLSKNNFVTLPASINSLLNLKELEMEDCK 212 (469)
Q Consensus 177 l~~L-------~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 212 (469)
+| +.|+|++|.++.+|..+..+++|+.|+|++|+
T Consensus 201 --~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 201 --RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp ---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred --hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence 44 55555555555555555555555555555554
No 88
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.66 E-value=5.1e-16 Score=141.43 Aligned_cols=171 Identities=21% Similarity=0.250 Sum_probs=99.9
Q ss_pred cEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCc-cCCCCCCCCEEEeeCCCCCccccc-cccCCCCcCEEeccC
Q 012173 19 SELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPS-SINGLKSPKTLNLSGCCKLENVPD-TLGQVESLEELDISE 96 (469)
Q Consensus 19 ~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~-~i~~L~sL~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~ 96 (469)
+.++.+++.++.+|..+ .++|++|++++|. +..+|. .+.++++|++|++++|. +..+|. .+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCC
Confidence 35556666666666443 3466666666655 334433 34566666666666653 334433 345666677777776
Q ss_pred cCCCCCCcc-ccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCCCCCCCC
Q 012173 97 TAVRRPPSS-IFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIG 175 (469)
Q Consensus 97 ~~i~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~ 175 (469)
|.+..++.. +..+++|++|++++|... ...+..+..+++|+.|++++|.+. +..+..+.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------------------~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~ 145 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQ-------------------SLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFD 145 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------CCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTT
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCc-------------------ccCHhHhccCCcCCEEECCCCccc-eeCHHHhc
Confidence 666666543 456667777776665411 111233566677777777777764 22333466
Q ss_pred CCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCcccCcCCC
Q 012173 176 NLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQSLPQ 219 (469)
Q Consensus 176 ~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 219 (469)
.+++|+.|++++|.+. ..+++|+.|+++.+..-..+|.
T Consensus 146 ~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 146 RLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp TCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBC
T ss_pred cCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceeec
Confidence 6777777777777554 2345677777776655555553
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=6.6e-16 Score=148.43 Aligned_cols=163 Identities=23% Similarity=0.375 Sum_probs=138.0
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPD 81 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~ 81 (469)
.+.++.+|. ++.+++|++|+|++|.++.++. ++.+++|++|++++|. +..+|. +..+++|++|++++|. +..+ .
T Consensus 55 ~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~~n~-i~~~-~ 128 (291)
T 1h6t_A 55 NSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSLEHNG-ISDI-N 128 (291)
T ss_dssp TSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEECTTSC-CCCC-G
T ss_pred CCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEECCCCc-CCCC-h
Confidence 356777775 5679999999999999999887 9999999999999987 666665 8999999999999974 5555 4
Q ss_pred cccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEcc
Q 012173 82 TLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLS 161 (469)
Q Consensus 82 ~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls 161 (469)
.++.+++|++|++++|.+..+ ..+..+++|+.|++++|.... +++ +..+++|+.|+++
T Consensus 129 ~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~--------------------~~~-l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 129 GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD--------------------IVP-LAGLTKLQNLYLS 186 (291)
T ss_dssp GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCC--------------------CGG-GTTCTTCCEEECC
T ss_pred hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcccc--------------------chh-hcCCCccCEEECC
Confidence 688899999999999999988 578899999999999986221 122 7789999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCc
Q 012173 162 DCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA 195 (469)
Q Consensus 162 ~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~ 195 (469)
+|.+.+ ++ .+..+++|+.|++++|.++..|.
T Consensus 187 ~N~i~~--l~-~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 187 KNHISD--LR-ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp SSCCCB--CG-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred CCcCCC--Ch-hhccCCCCCEEECcCCcccCCcc
Confidence 999964 55 48899999999999999887653
No 90
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.66 E-value=5.3e-16 Score=164.61 Aligned_cols=186 Identities=22% Similarity=0.269 Sum_probs=142.9
Q ss_pred CcCcccchhcCCCCCCcEEeeeccCCcccC-cccCCCCCCCEEeccCCCCCcccCc-cCCCCCCCCEEEeeCCCCCcccc
Q 012173 3 LQLKKFPQIVTTMKDLSELNLDGTSITEVP-SSIELLPGLELLNLNDCKNLARVPS-SINGLKSPKTLNLSGCCKLENVP 80 (469)
Q Consensus 3 ~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~-~i~~L~sL~~L~Ls~c~~l~~lp 80 (469)
.+|+++|..+. +++++|+|++|+|+.+| .+|+++++|++|+|++|. +..+|+ .|.+|++|++|+|++|. +..+|
T Consensus 41 ~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~ 116 (635)
T 4g8a_A 41 LNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLA 116 (635)
T ss_dssp SCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEEC
T ss_pred CCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCc-CCCCC
Confidence 46888898664 58999999999999986 478999999999999987 666654 58899999999999974 66666
Q ss_pred c-cccCCCCcCEEeccCcCCCCCCc-cccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEE
Q 012173 81 D-TLGQVESLEELDISETAVRRPPS-SIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKL 158 (469)
Q Consensus 81 ~-~l~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 158 (469)
. .++++++|++|++++|.++.+|. .++++++|++|++++|.... ...+..++.+++|++|
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~------------------~~~~~~~~~l~~L~~L 178 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS------------------FKLPEYFSNLTNLEHL 178 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC------------------CCCCGGGGGCTTCCEE
T ss_pred HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcccc------------------CCCchhhccchhhhhh
Confidence 4 57899999999999999998875 47889999999999876211 1125556778899999
Q ss_pred EccCCCCCCCCCCCCCCCCCC----CcEEEcCCCCCcccCccccCCCCcCEEeccCC
Q 012173 159 DLSDCGLGEGAIPSDIGNLHS----LNELYLSKNNFVTLPASINSLLNLKELEMEDC 211 (469)
Q Consensus 159 ~Ls~~~l~~~~~p~~l~~l~~----L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c 211 (469)
++++|.+. +..+..+..+.+ +..++++.|.+..++........++.+++.++
T Consensus 179 ~L~~N~l~-~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n 234 (635)
T 4g8a_A 179 DLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 234 (635)
T ss_dssp ECCSSCCC-EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred cccCcccc-ccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcc
Confidence 99999885 334455544433 34788888888877766666666667776654
No 91
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=1.3e-16 Score=151.10 Aligned_cols=168 Identities=21% Similarity=0.254 Sum_probs=139.3
Q ss_pred CCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEe
Q 012173 14 TMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELD 93 (469)
Q Consensus 14 ~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 93 (469)
.+.++..++++++.+++++ .+..+++|++|++++|. +..+| .+..+++|++|++++| .+..+|. ++.+++|++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEE
Confidence 3667788889999998887 58889999999999985 77787 5888999999999986 4566666 88999999999
Q ss_pred ccCcCCCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCCCCCC
Q 012173 94 ISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSD 173 (469)
Q Consensus 94 L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~ 173 (469)
+++|.+..+|.... ++|+.|++++|.... .+.+..+++|+.|++++|++.+ ++ .
T Consensus 92 L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~---------------------~~~l~~l~~L~~L~Ls~N~i~~--~~-~ 145 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS--ACLSRLFLDNNELRD---------------------TDSLIHLKNLEILSIRNNKLKS--IV-M 145 (263)
T ss_dssp CCSSCCSCCTTCCC--SSCCEEECCSSCCSB---------------------SGGGTTCTTCCEEECTTSCCCB--CG-G
T ss_pred CCCCccCCcCcccc--CcccEEEccCCccCC---------------------ChhhcCcccccEEECCCCcCCC--Ch-H
Confidence 99999998876444 899999999886211 2347788999999999999864 44 6
Q ss_pred CCCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCcc
Q 012173 174 IGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKR 213 (469)
Q Consensus 174 l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~ 213 (469)
++.+++|+.|++++|.++.+ ..+..+++|+.|++++|+-
T Consensus 146 l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 146 LGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp GGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred HccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcc
Confidence 88899999999999999988 6788899999999999753
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.64 E-value=4.5e-15 Score=155.00 Aligned_cols=160 Identities=21% Similarity=0.293 Sum_probs=124.2
Q ss_pred CCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccC
Q 012173 40 GLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFG 119 (469)
Q Consensus 40 ~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~ 119 (469)
+|+.|+|++|. +..+|..+. ++|++|++++| .+..+| +.+++|++|++++|.++.+|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l~--~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNLP--PQITVLEITQN-ALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCCC--TTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCC-CCccCHhHc--CCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 89999999986 667998774 89999999997 566888 458999999999999999988 655 999999999
Q ss_pred CCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCccccC
Q 012173 120 CNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINS 199 (469)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~ 199 (469)
|.... +|. .+++|+.|++++|.+.. +|. .+++|+.|+|++|.++.+|. +.
T Consensus 130 N~l~~--------------------lp~---~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~L~~lp~-l~- 179 (571)
T 3cvr_A 130 NQLTM--------------------LPE---LPALLEYINADNNQLTM--LPE---LPTSLEVLSVRNNQLTFLPE-LP- 179 (571)
T ss_dssp SCCSC--------------------CCC---CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSCCCC-CC-
T ss_pred CcCCC--------------------CCC---cCccccEEeCCCCccCc--CCC---cCCCcCEEECCCCCCCCcch-hh-
Confidence 86211 233 56788888888888853 665 56788888888888888887 54
Q ss_pred CCCcCEEeccCCcccCcCCCCCCCc-------cEEEecCCCCCcccccch
Q 012173 200 LLNLKELEMEDCKRLQSLPQLPPNI-------IFVKVNGCSSLVTLLGAL 242 (469)
Q Consensus 200 l~~L~~L~L~~c~~L~~lp~lp~~L-------~~L~i~~C~~L~~l~~~~ 242 (469)
++|+.|+|++| .++.+|.++.+| +.|++.++ .++.++...
T Consensus 180 -~~L~~L~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l 226 (571)
T 3cvr_A 180 -ESLEALDVSTN-LLESLPAVPVRNHHSEETEIFFRCREN-RITHIPENI 226 (571)
T ss_dssp -TTCCEEECCSS-CCSSCCCCC--------CCEEEECCSS-CCCCCCGGG
T ss_pred -CCCCEEECcCC-CCCchhhHHHhhhcccccceEEecCCC-cceecCHHH
Confidence 88888888887 466777766677 88888775 566666533
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=1.5e-16 Score=167.78 Aligned_cols=187 Identities=21% Similarity=0.275 Sum_probs=152.7
Q ss_pred CCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEec
Q 012173 15 MKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDI 94 (469)
Q Consensus 15 l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 94 (469)
+..+..+.+..+.+..+.. +..+++|+.|++++|. +..+|. +..+++|+.|+|++|. +..++. +..+++|+.|+|
T Consensus 20 l~~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~-i~~l~~-l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~L 94 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCC-CCCCTT-GGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEEC
T ss_pred HHHHHHHhccCCCcccccc-hhcCCCCCEEECcCCC-CCCChH-HccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEEC
Confidence 3445566777777776544 5788999999999977 677774 8899999999999975 555555 889999999999
Q ss_pred cCcCCCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCCCCCCC
Q 012173 95 SETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDI 174 (469)
Q Consensus 95 ~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l 174 (469)
++|.+..+| .+..+++|+.|+|++|.... ++.+..+++|+.|+|++|.+.. + ..+
T Consensus 95 s~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~---------------------l~~l~~l~~L~~L~Ls~N~l~~--l-~~l 149 (605)
T 1m9s_A 95 DENKIKDLS-SLKDLKKLKSLSLEHNGISD---------------------INGLVHLPQLESLYLGNNKITD--I-TVL 149 (605)
T ss_dssp CSSCCCCCT-TSTTCTTCCEEECTTSCCCC---------------------CGGGGGCTTCSEEECCSSCCCC--C-GGG
T ss_pred cCCCCCCCh-hhccCCCCCEEEecCCCCCC---------------------CccccCCCccCEEECCCCccCC--c-hhh
Confidence 999999887 68899999999999987221 2346778999999999999964 4 678
Q ss_pred CCCCCCcEEEcCCCCCcccCccccCCCCcCEEeccCCcccCcCCCC--CCCccEEEecCCC
Q 012173 175 GNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQSLPQL--PPNIIFVKVNGCS 233 (469)
Q Consensus 175 ~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l--p~~L~~L~i~~C~ 233 (469)
..+++|+.|+|++|.+..++. +..+++|+.|+|++|. +..+|.+ .++|+.|++.+|.
T Consensus 150 ~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 150 SRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp GSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEECCSEE
T ss_pred cccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC-CCCChHHccCCCCCEEEccCCc
Confidence 899999999999999998876 8999999999999984 5555544 3688888887764
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=6.1e-16 Score=139.77 Aligned_cols=151 Identities=17% Similarity=0.214 Sum_probs=125.0
Q ss_pred cCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEeccCcCCCC-CCccccCCcCCc
Q 012173 35 IELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR-PPSSIFLMKNLR 113 (469)
Q Consensus 35 i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~-lp~~l~~l~~L~ 113 (469)
.+.+++|++|++++|. +..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|.+.. .+..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 3678899999999976 66888 5889999999999998 555554 68889999999999999985 577888999999
Q ss_pred eeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCC-CCCCCCCCCCCCCCCCcEEEcCCCCCcc
Q 012173 114 TLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCG-LGEGAIPSDIGNLHSLNELYLSKNNFVT 192 (469)
Q Consensus 114 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~-l~~~~~p~~l~~l~~L~~L~L~~n~l~~ 192 (469)
+|++++|.. ....+..+..+++|++|++++|. +. .+| .+..+++|+.|++++|.++.
T Consensus 116 ~L~Ls~n~i-------------------~~~~~~~l~~l~~L~~L~L~~n~~i~--~~~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 116 LLDISHSAH-------------------DDSILTKINTLPKVNSIDLSYNGAIT--DIM-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp EEECCSSBC-------------------BGGGHHHHTTCSSCCEEECCSCTBCC--CCG-GGGGCSSCCEEECTTBCCCC
T ss_pred EEEecCCcc-------------------CcHhHHHHhhCCCCCEEEccCCCCcc--ccH-hhcCCCCCCEEECCCCCCcC
Confidence 999998762 22235556788999999999998 64 355 68889999999999999998
Q ss_pred cCccccCCCCcCEEeccCCc
Q 012173 193 LPASINSLLNLKELEMEDCK 212 (469)
Q Consensus 193 lp~~i~~l~~L~~L~L~~c~ 212 (469)
++ .+..+++|+.|++++++
T Consensus 174 ~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 174 YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CT-TGGGCSSCCEEEECBC-
T ss_pred hH-HhccCCCCCEEEeeCcc
Confidence 87 78889999999999875
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.63 E-value=4.8e-15 Score=134.92 Aligned_cols=169 Identities=21% Similarity=0.251 Sum_probs=122.6
Q ss_pred CcCcccchhcCCCCCCcEEeeeccCCcccCcc-cCCCCCCCEEeccCCCCCcccCcc-CCCCCCCCEEEeeCCCCCcccc
Q 012173 3 LQLKKFPQIVTTMKDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNLARVPSS-INGLKSPKTLNLSGCCKLENVP 80 (469)
Q Consensus 3 ~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~-i~~L~sL~~L~Ls~c~~l~~lp 80 (469)
+.++.+|..+ .++|++|+++++.++.++.. ++.+++|++|++++|. +..+|.. +..+++|++|++++|.. ..+|
T Consensus 17 ~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~ 92 (208)
T 2o6s_A 17 QGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQL-QSLP 92 (208)
T ss_dssp SCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCC
T ss_pred CCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcC-CccC
Confidence 4567777655 46888888888888877654 6788888888888876 5555543 57788888888888644 4444
Q ss_pred -ccccCCCCcCEEeccCcCCCCCCcc-ccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEE
Q 012173 81 -DTLGQVESLEELDISETAVRRPPSS-IFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKL 158 (469)
Q Consensus 81 -~~l~~l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 158 (469)
..++.+++|++|++++|.+..++.. +..+++|++|++++|... +..+..+..+++|+.|
T Consensus 93 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-------------------~~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-------------------SVPDGVFDRLTSLQYI 153 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-------------------CCCTTTTTTCTTCCEE
T ss_pred HhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-------------------eeCHHHhccCCCccEE
Confidence 4467888888888888888877664 577888888888887521 1113346778888888
Q ss_pred EccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCc-ccCccccCCCC
Q 012173 159 DLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASINSLLN 202 (469)
Q Consensus 159 ~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~ 202 (469)
++++|.+. +.+++|+.|+++.|+++ .+|..++.++.
T Consensus 154 ~l~~N~~~--------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 154 WLHDNPWD--------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ECCSCCBC--------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred EecCCCee--------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 88888653 34567888888888877 67777665544
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.63 E-value=1.7e-17 Score=165.99 Aligned_cols=214 Identities=17% Similarity=0.205 Sum_probs=155.9
Q ss_pred CcccchhcCCCCCCcEEeeeccCCcc-----cCcccCCCCCCCEEeccCCCC--C-cccCccC-------CCCCCCCEEE
Q 012173 5 LKKFPQIVTTMKDLSELNLDGTSITE-----VPSSIELLPGLELLNLNDCKN--L-ARVPSSI-------NGLKSPKTLN 69 (469)
Q Consensus 5 L~~lp~~~~~l~~L~~L~L~~~~l~~-----lp~~i~~l~~L~~L~L~~c~~--l-~~lp~~i-------~~L~sL~~L~ 69 (469)
++.++..+..+++|++|+|++|.+.. ++..+..+++|++|+|++|.. + ..+|..+ ..+++|++|+
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 45677777788999999999998874 445688999999999999742 2 2344433 6889999999
Q ss_pred eeCCCCCc----cccccccCCCCcCEEeccCcCCCC-----CCccccCC---------cCCceeeccCCCCCCCccCccc
Q 012173 70 LSGCCKLE----NVPDTLGQVESLEELDISETAVRR-----PPSSIFLM---------KNLRTLSLFGCNGPPSWHLHLP 131 (469)
Q Consensus 70 Ls~c~~l~----~lp~~l~~l~~L~~L~L~~~~i~~-----lp~~l~~l---------~~L~~L~l~~~~~~~~~~~~~~ 131 (469)
+++|.... .+|..+..+++|++|++++|.+.. ++..+..+ ++|++|++++|.....
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~------ 174 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG------ 174 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG------
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH------
Confidence 99986655 377788899999999999998863 33334444 8999999998872210
Q ss_pred ccccCCccccccccCCCCCCCCCCCEEEccCCCCCCC----CCCCCCCCCCCCcEEEcCCCCC-----cccCccccCCCC
Q 012173 132 FNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEG----AIPSDIGNLHSLNELYLSKNNF-----VTLPASINSLLN 202 (469)
Q Consensus 132 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~----~~p~~l~~l~~L~~L~L~~n~l-----~~lp~~i~~l~~ 202 (469)
....+...+..+++|+.|++++|++.+. .++..+..+++|+.|+|++|.+ ..+|..+..+++
T Consensus 175 ---------~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 175 ---------SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp ---------GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred ---------HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence 0011112445677899999999988522 2344778889999999999998 467888888999
Q ss_pred cCEEeccCCcccCc----CCC-C----CCCccEEEecCCC
Q 012173 203 LKELEMEDCKRLQS----LPQ-L----PPNIIFVKVNGCS 233 (469)
Q Consensus 203 L~~L~L~~c~~L~~----lp~-l----p~~L~~L~i~~C~ 233 (469)
|++|+|++|..-.. ++. + .++|+.|++.+|.
T Consensus 246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 99999999863221 222 1 4678888887764
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=1.1e-15 Score=144.78 Aligned_cols=162 Identities=19% Similarity=0.297 Sum_probs=136.3
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPD 81 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~ 81 (469)
++.++.++ .+..+++|++|++++|.++.++ .++.+++|++|+|++|. +..+|. +.++++|++|++++| .+..+|.
T Consensus 28 ~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~ 102 (263)
T 1xeu_A 28 KQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRN-RLKNLNG 102 (263)
T ss_dssp CSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSS-CCSCCTT
T ss_pred CCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCC-ccCCcCc
Confidence 35677777 4557899999999999999998 69999999999999986 677777 899999999999996 5566765
Q ss_pred cccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEcc
Q 012173 82 TLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLS 161 (469)
Q Consensus 82 ~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls 161 (469)
... ++|++|++++|.+..++ .+..+++|+.|++++|.... .+.+..+++|+.|+++
T Consensus 103 ~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~---------------------~~~l~~l~~L~~L~L~ 158 (263)
T 1xeu_A 103 IPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKS---------------------IVMLGFLSKLEVLDLH 158 (263)
T ss_dssp CCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCB---------------------CGGGGGCTTCCEEECT
T ss_pred ccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCC---------------------ChHHccCCCCCEEECC
Confidence 443 99999999999999886 58899999999999987211 1356778999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCc
Q 012173 162 DCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA 195 (469)
Q Consensus 162 ~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~ 195 (469)
+|.+.+ + ..+..+++|+.|++++|.+...|.
T Consensus 159 ~N~i~~--~-~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 159 GNEITN--T-GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp TSCCCB--C-TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred CCcCcc--h-HHhccCCCCCEEeCCCCcccCCcc
Confidence 999964 3 678899999999999999987764
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.63 E-value=7.5e-15 Score=135.05 Aligned_cols=100 Identities=20% Similarity=0.313 Sum_probs=69.3
Q ss_pred cEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccC-ccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEeccCc
Q 012173 19 SELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVP-SSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISET 97 (469)
Q Consensus 19 ~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~ 97 (469)
+.++++++.++++|..+. ++|+.|+|++|. +..+| ..+..+++|++|++++|......|..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 567888888888887654 678888888876 44444 36777888888888886555445677778888888888888
Q ss_pred CCCCCCccc-cCCcCCceeeccCCC
Q 012173 98 AVRRPPSSI-FLMKNLRTLSLFGCN 121 (469)
Q Consensus 98 ~i~~lp~~l-~~l~~L~~L~l~~~~ 121 (469)
.+..+|..+ ..+++|++|++++|.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~ 115 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANK 115 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCccCHhHccCCCCCCEEECCCCC
Confidence 777766542 345555555554443
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.62 E-value=1.1e-14 Score=134.75 Aligned_cols=147 Identities=21% Similarity=0.298 Sum_probs=81.8
Q ss_pred cEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccc-cccCCCCcCEEeccCc
Q 012173 19 SELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPD-TLGQVESLEELDISET 97 (469)
Q Consensus 19 ~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~ 97 (469)
+.++.+++.++.+|..+. ++|++|+|++|......|..+.++++|++|++++|. +..+|. .+..+++|++|++++|
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC
Confidence 345555555555554332 455555555544333334444455555555555532 233332 2344444444444444
Q ss_pred CCCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCCCCCCCCCC
Q 012173 98 AVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNL 177 (469)
Q Consensus 98 ~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l 177 (469)
.++.++ +..+..+++|+.|++++|.+. .+|..+..+
T Consensus 99 ~l~~l~------------------------------------------~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l 134 (229)
T 3e6j_A 99 QLTVLP------------------------------------------SAVFDRLVHLKELFMCCNKLT--ELPRGIERL 134 (229)
T ss_dssp CCCCCC------------------------------------------TTTTTTCTTCCEEECCSSCCC--SCCTTGGGC
T ss_pred cCCccC------------------------------------------hhHhCcchhhCeEeccCCccc--ccCcccccC
Confidence 444333 223455666777777777764 467777777
Q ss_pred CCCcEEEcCCCCCcccCc-cccCCCCcCEEeccCCc
Q 012173 178 HSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCK 212 (469)
Q Consensus 178 ~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~ 212 (469)
++|+.|+|++|.++.+|. .+..+++|+.|++++|+
T Consensus 135 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 135 THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 777777777777777664 45667777777777764
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.62 E-value=2.7e-17 Score=164.55 Aligned_cols=212 Identities=17% Similarity=0.221 Sum_probs=157.9
Q ss_pred cchhcCCCCCCcEEeeeccCCc----ccCccc-------CCCCCCCEEeccCCCCCc----ccCccCCCCCCCCEEEeeC
Q 012173 8 FPQIVTTMKDLSELNLDGTSIT----EVPSSI-------ELLPGLELLNLNDCKNLA----RVPSSINGLKSPKTLNLSG 72 (469)
Q Consensus 8 lp~~~~~l~~L~~L~L~~~~l~----~lp~~i-------~~l~~L~~L~L~~c~~l~----~lp~~i~~L~sL~~L~Ls~ 72 (469)
++..+..+++|++|+|++|.+. .+|..+ ..+++|++|+|++|.... .+|..+..+++|++|++++
T Consensus 52 l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 131 (386)
T 2ca6_A 52 LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHN 131 (386)
T ss_dssp HHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcC
Confidence 4455778999999999997554 334443 789999999999988554 4777788899999999999
Q ss_pred CCCCcc----ccccccCC---------CCcCEEeccCcCCC--CCC---ccccCCcCCceeeccCCCCCCCccCcccccc
Q 012173 73 CCKLEN----VPDTLGQV---------ESLEELDISETAVR--RPP---SSIFLMKNLRTLSLFGCNGPPSWHLHLPFNL 134 (469)
Q Consensus 73 c~~l~~----lp~~l~~l---------~~L~~L~L~~~~i~--~lp---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 134 (469)
|..... ++..+..+ ++|++|++++|.+. .++ ..+..+++|++|++++|.....
T Consensus 132 n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~--------- 202 (386)
T 2ca6_A 132 NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE--------- 202 (386)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH---------
T ss_pred CCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHh---------
Confidence 865322 33334444 89999999999987 344 4667889999999999862100
Q ss_pred cCCccccccccCCCCCCCCCCCEEEccCCCCCC---CCCCCCCCCCCCCcEEEcCCCCCcc-----cCccccC--CCCcC
Q 012173 135 MGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGE---GAIPSDIGNLHSLNELYLSKNNFVT-----LPASINS--LLNLK 204 (469)
Q Consensus 135 ~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~---~~~p~~l~~l~~L~~L~L~~n~l~~-----lp~~i~~--l~~L~ 204 (469)
......+..+..+++|+.|+|++|.+.+ ..+|..+..+++|+.|+|++|.++. +|..+.. +++|+
T Consensus 203 -----g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~ 277 (386)
T 2ca6_A 203 -----GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ 277 (386)
T ss_dssp -----HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCC
T ss_pred -----HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeE
Confidence 0001123367788999999999999842 3467778889999999999999984 4666644 89999
Q ss_pred EEeccCCcccC----cCCCC----CCCccEEEecCCC
Q 012173 205 ELEMEDCKRLQ----SLPQL----PPNIIFVKVNGCS 233 (469)
Q Consensus 205 ~L~L~~c~~L~----~lp~l----p~~L~~L~i~~C~ 233 (469)
+|+|++|..-. .+|.. .++|+.|++.+|.
T Consensus 278 ~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 278 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp EEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred EEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 99999986433 25532 3788888888764
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.61 E-value=1.1e-14 Score=133.82 Aligned_cols=100 Identities=13% Similarity=0.192 Sum_probs=65.7
Q ss_pred cEEeeeccCCcccCcccCCCCCCCEEeccCCCCCccc-C-ccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEeccC
Q 012173 19 SELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARV-P-SSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISE 96 (469)
Q Consensus 19 ~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~l-p-~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 96 (469)
+.++++++.++++|..+. ..+++|+|++|. +..+ | ..+.++++|++|++++|......+..++.+++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 578888888888877553 456788888876 4444 3 2366778888888877643333334677777788888877
Q ss_pred cCCCCCCcc-ccCCcCCceeeccCCC
Q 012173 97 TAVRRPPSS-IFLMKNLRTLSLFGCN 121 (469)
Q Consensus 97 ~~i~~lp~~-l~~l~~L~~L~l~~~~ 121 (469)
|.+..++.. +..+++|++|++++|.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~ 116 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNR 116 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCc
Confidence 777766543 4555555555555544
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.61 E-value=5.5e-15 Score=146.44 Aligned_cols=170 Identities=22% Similarity=0.257 Sum_probs=117.8
Q ss_pred cEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCcc-CC-CCCCCCEEEeeCCCCCccccccccCCCCcCEEeccC
Q 012173 19 SELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSS-IN-GLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISE 96 (469)
Q Consensus 19 ~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~-i~-~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 96 (469)
+.+++++++++.+|..+. ..++.|+|++|. +..++.. +. ++++|++|+|++|......+..+..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 578888888888887653 458888888876 5555443 44 788888888888644333345678888888888888
Q ss_pred cCCCCCCc-cccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCCCCCCC-
Q 012173 97 TAVRRPPS-SIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDI- 174 (469)
Q Consensus 97 ~~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l- 174 (469)
|.+..++. .+..+++|++|++++|.. ....+..+..+++|+.|+|++|.+.. +|..+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i-------------------~~~~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~ 156 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHI-------------------VVVDRNAFEDMAQLQKLYLSQNQISR--FPVELI 156 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCC-------------------CEECTTTTTTCTTCCEEECCSSCCCS--CCGGGT
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcc-------------------cEECHHHhCCcccCCEEECCCCcCCe--eCHHHh
Confidence 88887654 466778888888877662 12225567777888888888887753 55543
Q ss_pred ---CCCCCCcEEEcCCCCCcccCc-cccCCCC--cCEEeccCCc
Q 012173 175 ---GNLHSLNELYLSKNNFVTLPA-SINSLLN--LKELEMEDCK 212 (469)
Q Consensus 175 ---~~l~~L~~L~L~~n~l~~lp~-~i~~l~~--L~~L~L~~c~ 212 (469)
..+++|+.|+|++|.++.+|. .+..++. |+.|+|++|+
T Consensus 157 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp C----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred cCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 467888888888888887774 4455555 3667776653
No 103
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=4.1e-18 Score=178.63 Aligned_cols=176 Identities=19% Similarity=0.190 Sum_probs=136.7
Q ss_pred CCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCC-------------CCcccCccCCCCCCCCEEE-eeCCCCCcc
Q 012173 13 TTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCK-------------NLARVPSSINGLKSPKTLN-LSGCCKLEN 78 (469)
Q Consensus 13 ~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~-------------~l~~lp~~i~~L~sL~~L~-Ls~c~~l~~ 78 (469)
...++|+.|+|++|.++.+|..++.+++|+.|++++|. .....|..++.+++|+.|+ ++. +.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~-n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA-AYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH-HHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh-cccch
Confidence 56789999999999999999999999999999997764 3445566677778888887 333 22222
Q ss_pred ccc------cccC--CCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCC
Q 012173 79 VPD------TLGQ--VESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLS 150 (469)
Q Consensus 79 lp~------~l~~--l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 150 (469)
++. .+.. ...|+.|++++|.++.+|. ++.+++|+.|++++|... .+|..++
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~--------------------~lp~~~~ 483 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR--------------------ALPPALA 483 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC--------------------CCCGGGG
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc--------------------ccchhhh
Confidence 221 1111 1258889999999998887 888999999999887621 3366778
Q ss_pred CCCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCccc--CccccCCCCcCEEeccCCcc
Q 012173 151 GLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL--PASINSLLNLKELEMEDCKR 213 (469)
Q Consensus 151 ~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l--p~~i~~l~~L~~L~L~~c~~ 213 (469)
.+++|+.|+|++|.+.. +| .++.+++|+.|+|++|.++.+ |..+..+++|+.|+|++|+.
T Consensus 484 ~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp GCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred cCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 88999999999998863 77 788899999999999999987 78888999999999998753
No 104
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=1.9e-14 Score=141.92 Aligned_cols=198 Identities=18% Similarity=0.159 Sum_probs=154.8
Q ss_pred cEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCc-cCCCCCCCCEEEeeCCCCCccccc-cccCCCCcCE-Eecc
Q 012173 19 SELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPS-SINGLKSPKTLNLSGCCKLENVPD-TLGQVESLEE-LDIS 95 (469)
Q Consensus 19 ~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~-~i~~L~sL~~L~Ls~c~~l~~lp~-~l~~l~~L~~-L~L~ 95 (469)
+.++.++++++++|..+ .+++++|+|++|. ++.+|. .+.++++|++|+|++|..++.+|. .+.++++|++ +.+.
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 57888889999999877 4789999999976 778886 578999999999999988787775 4678888776 5566
Q ss_pred CcCCCCC-CccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCCCC-CC
Q 012173 96 ETAVRRP-PSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIP-SD 173 (469)
Q Consensus 96 ~~~i~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p-~~ 173 (469)
.|.+..+ |..+..+++|++|++++|.... ..+..+.....+..|++.++... ..++ ..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-------------------~~~~~~~~~~~l~~l~l~~~~~i-~~l~~~~ 148 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKH-------------------LPDVHKIHSLQKVLLDIQDNINI-HTIERNS 148 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSS-------------------CCCCTTCCBSSCEEEEEESCTTC-CEECTTS
T ss_pred CCcccccCchhhhhcccccccccccccccc-------------------CCchhhcccchhhhhhhcccccc-ccccccc
Confidence 7889887 4567889999999999886211 11223344556788888775432 2244 34
Q ss_pred CCCC-CCCcEEEcCCCCCcccCccccCCCCcCEEeccCCcccCcCCCC----CCCccEEEecCCCCCccccc
Q 012173 174 IGNL-HSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQSLPQL----PPNIIFVKVNGCSSLVTLLG 240 (469)
Q Consensus 174 l~~l-~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l----p~~L~~L~i~~C~~L~~l~~ 240 (469)
+..+ ..++.|+|++|+++.+|..+....+|+.|++.++..++.+|.- .++|+.|+++++ .|+.++.
T Consensus 149 f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~ 219 (350)
T 4ay9_X 149 FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS 219 (350)
T ss_dssp STTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS
T ss_pred hhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh
Confidence 5555 4689999999999999998888889999999999999999852 368999999987 5777765
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=1.8e-14 Score=133.30 Aligned_cols=116 Identities=22% Similarity=0.290 Sum_probs=96.6
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCccc-CcccCCCCCCCEEeccCCCCCcccCcc-CCCCCCCCEEEeeCCCCCccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNLARVPSS-INGLKSPKTLNLSGCCKLENV 79 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~-i~~L~sL~~L~Ls~c~~l~~l 79 (469)
.+++..+|..+. ++|++|+|++|.+..+ |..++.+++|++|+|++|. +..+|.. +..+++|++|+|++|. +..+
T Consensus 28 ~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l 103 (229)
T 3e6j_A 28 SKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQ-LTVL 103 (229)
T ss_dssp TSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCC
T ss_pred CCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCc-CCcc
Confidence 357889998764 8999999999999987 6778999999999999988 5677654 6889999999999974 5555
Q ss_pred c-ccccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCC
Q 012173 80 P-DTLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCN 121 (469)
Q Consensus 80 p-~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~ 121 (469)
| ..+..+++|++|++++|.+..+|..+..+++|++|++++|.
T Consensus 104 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC
T ss_pred ChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc
Confidence 5 45788999999999999999988877777777777776654
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.58 E-value=2.5e-14 Score=131.52 Aligned_cols=143 Identities=21% Similarity=0.346 Sum_probs=110.3
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccCc-ccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVP 80 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp 80 (469)
.+.++++|..+. ++|+.|+|++|.|+.++. .++.+++|++|+|++|......|..+.++++|++|+|++| .+..+|
T Consensus 20 ~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~ 96 (220)
T 2v9t_B 20 GKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELP 96 (220)
T ss_dssp TSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCC
T ss_pred CCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccC
Confidence 467889998764 799999999999998865 7899999999999998855555888999999999999996 455666
Q ss_pred cc-ccCCCCcCEEeccCcCCCCCC-ccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEE
Q 012173 81 DT-LGQVESLEELDISETAVRRPP-SSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKL 158 (469)
Q Consensus 81 ~~-l~~l~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 158 (469)
.. +..+++|++|++++|.+..++ ..+.. +++|+.|
T Consensus 97 ~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~-------------------------------------------l~~L~~L 133 (220)
T 2v9t_B 97 KSLFEGLFSLQLLLLNANKINCLRVDAFQD-------------------------------------------LHNLNLL 133 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------------------------------CTTCCEE
T ss_pred HhHccCCCCCCEEECCCCCCCEeCHHHcCC-------------------------------------------CCCCCEE
Confidence 55 688999999999999998774 33334 4455555
Q ss_pred EccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCc
Q 012173 159 DLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV 191 (469)
Q Consensus 159 ~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~ 191 (469)
+|++|.+. ...+..+..+++|+.|+|++|.+.
T Consensus 134 ~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 134 SLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp ECCSSCCS-CCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCcCC-EECHHHHhCCCCCCEEEeCCCCcC
Confidence 55555553 223345666777777777777665
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.58 E-value=2.2e-14 Score=131.91 Aligned_cols=144 Identities=22% Similarity=0.276 Sum_probs=109.0
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccCc--ccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVPS--SIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENV 79 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~l 79 (469)
++.++++|..+. +.+++|+|++|.|+.++. .++.+++|++|+|++|......+..+.++++|++|++++|......
T Consensus 20 ~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~ 97 (220)
T 2v70_A 20 NQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQ 97 (220)
T ss_dssp SSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccC
Confidence 467889998764 578999999999998843 4799999999999998844434447999999999999997665555
Q ss_pred cccccCCCCcCEEeccCcCCCCC-CccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEE
Q 012173 80 PDTLGQVESLEELDISETAVRRP-PSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKL 158 (469)
Q Consensus 80 p~~l~~l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 158 (469)
+..++.+++|++|++++|.+..+ |..+..+ ++|+.|
T Consensus 98 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-------------------------------------------~~L~~L 134 (220)
T 2v70_A 98 HKMFKGLESLKTLMLRSNRITCVGNDSFIGL-------------------------------------------SSVRLL 134 (220)
T ss_dssp GGGGTTCSSCCEEECTTSCCCCBCTTSSTTC-------------------------------------------TTCSEE
T ss_pred HhHhcCCcCCCEEECCCCcCCeECHhHcCCC-------------------------------------------ccCCEE
Confidence 56689999999999999999876 3344444 445555
Q ss_pred EccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCc
Q 012173 159 DLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV 191 (469)
Q Consensus 159 ~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~ 191 (469)
+|++|.+. +..|..+..+++|+.|+|++|.+.
T Consensus 135 ~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 135 SLYDNQIT-TVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ECTTSCCC-CBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ECCCCcCC-EECHHHhcCCCCCCEEEecCcCCc
Confidence 55555553 334566677777777777777665
No 108
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.57 E-value=7e-14 Score=148.18 Aligned_cols=200 Identities=24% Similarity=0.276 Sum_probs=138.0
Q ss_pred CCCCCcEEeeeccCCcc---cCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccc-ccccCCCCc
Q 012173 14 TMKDLSELNLDGTSITE---VPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVP-DTLGQVESL 89 (469)
Q Consensus 14 ~l~~L~~L~L~~~~l~~---lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp-~~l~~l~~L 89 (469)
.+++|+.|+++.+.+.. .+..+..+.+|++|++..+. ...++..+..+++|+.+++.++......+ ..+..+.++
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS-EEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccc-cccccccccccccccchhhhhcccccccccccccccccc
Confidence 35566666666665542 23444556666666666654 33444556667777777776665544433 335567777
Q ss_pred CEEeccCcCCCCC-CccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCCCCC
Q 012173 90 EELDISETAVRRP-PSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEG 168 (469)
Q Consensus 90 ~~L~L~~~~i~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~ 168 (469)
+.++++.|.+... +..+..+++|+.|++++|.. .....+..+..+++|++|+|++|++. +
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~------------------~~~~~~~~~~~l~~L~~L~Ls~N~L~-~ 508 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF------------------QENFLPDIFTELRNLTFLDLSQCQLE-Q 508 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE------------------GGGEECSCCTTCTTCCEEECTTSCCC-E
T ss_pred ccccccccccccccccccccchhhhhhhhhhccc------------------ccccCchhhhhccccCEEECCCCccC-C
Confidence 7777777766644 34455667777777776541 12234677889999999999999996 5
Q ss_pred CCCCCCCCCCCCcEEEcCCCCCcccCc-cccCCCCcCEEeccCCcccCcCC----CCCCCccEEEecCCC
Q 012173 169 AIPSDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCKRLQSLP----QLPPNIIFVKVNGCS 233 (469)
Q Consensus 169 ~~p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp----~lp~~L~~L~i~~C~ 233 (469)
..|..++.+++|+.|+|++|+++.++. .+..+++|+.|+|++|+.....| .+|++|+.|++++.+
T Consensus 509 l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 509 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 567889999999999999999998865 57889999999999986544434 345678888887643
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.55 E-value=1e-14 Score=144.54 Aligned_cols=164 Identities=23% Similarity=0.266 Sum_probs=130.4
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccCcc-cC-CCCCCCEEeccCCCCCcccC-ccCCCCCCCCEEEeeCCCCCcc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVPSS-IE-LLPGLELLNLNDCKNLARVP-SSINGLKSPKTLNLSGCCKLEN 78 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~-i~-~l~~L~~L~L~~c~~l~~lp-~~i~~L~sL~~L~Ls~c~~l~~ 78 (469)
.++|+.+|..+. ++++.|+|++|+|+.++.. +. .+++|++|+|++|. +..++ ..+.++++|++|+|++|. +..
T Consensus 27 ~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~ 102 (361)
T 2xot_A 27 KQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNH-LHT 102 (361)
T ss_dssp SSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCE
T ss_pred CCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCc-CCc
Confidence 467899998764 6799999999999988664 55 89999999999987 55554 568999999999999975 555
Q ss_pred cc-ccccCCCCcCEEeccCcCCCCC-CccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCC-C---CCC
Q 012173 79 VP-DTLGQVESLEELDISETAVRRP-PSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPS-L---SGL 152 (469)
Q Consensus 79 lp-~~l~~l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l---~~l 152 (469)
++ ..+..+++|++|+|++|.+..+ |..+..+++|+.|++++|.... ++.. + ..+
T Consensus 103 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~--------------------l~~~~~~~~~~l 162 (361)
T 2xot_A 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR--------------------FPVELIKDGNKL 162 (361)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS--------------------CCGGGTC----C
T ss_pred CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe--------------------eCHHHhcCcccC
Confidence 54 4688999999999999999977 5678899999999999986221 1222 2 568
Q ss_pred CCCCEEEccCCCCCCCCCC-CCCCCCCC--CcEEEcCCCCCc
Q 012173 153 RSLTKLDLSDCGLGEGAIP-SDIGNLHS--LNELYLSKNNFV 191 (469)
Q Consensus 153 ~~L~~L~Ls~~~l~~~~~p-~~l~~l~~--L~~L~L~~n~l~ 191 (469)
++|+.|+|++|.+.. +| ..+..++. |+.|+|++|.+.
T Consensus 163 ~~L~~L~L~~N~l~~--l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 163 PKLMLLDLSSNKLKK--LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp TTCCEEECCSSCCCC--CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CcCCEEECCCCCCCc--cCHHHhhhccHhhcceEEecCCCcc
Confidence 999999999999963 54 34566665 488999999876
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.55 E-value=2.9e-16 Score=155.74 Aligned_cols=214 Identities=15% Similarity=0.119 Sum_probs=141.4
Q ss_pred CcCc-ccchhcCCCCCCcEEeeeccCCcccC-----cccCCCC-CCCEEeccCCCCCcccCccCCCC-----CCCCEEEe
Q 012173 3 LQLK-KFPQIVTTMKDLSELNLDGTSITEVP-----SSIELLP-GLELLNLNDCKNLARVPSSINGL-----KSPKTLNL 70 (469)
Q Consensus 3 ~~L~-~lp~~~~~l~~L~~L~L~~~~l~~lp-----~~i~~l~-~L~~L~L~~c~~l~~lp~~i~~L-----~sL~~L~L 70 (469)
+++. .+|+++...++|++|+|++|.++..+ ..+..++ +|++|+|++|......+..+..+ ++|++|++
T Consensus 8 n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 87 (362)
T 3goz_A 8 HPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNL 87 (362)
T ss_dssp CTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred ccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEEC
Confidence 3444 45667766677999999999998776 5678888 99999999997544445445544 89999999
Q ss_pred eCCCCCcccccc----ccCC-CCcCEEeccCcCCCCCCc-c----ccC-CcCCceeeccCCCCCCCccCcccccccCCcc
Q 012173 71 SGCCKLENVPDT----LGQV-ESLEELDISETAVRRPPS-S----IFL-MKNLRTLSLFGCNGPPSWHLHLPFNLMGKSS 139 (469)
Q Consensus 71 s~c~~l~~lp~~----l~~l-~~L~~L~L~~~~i~~lp~-~----l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 139 (469)
++|......+.. +..+ ++|++|++++|.+...+. . +.. .++|++|++++|.....
T Consensus 88 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-------------- 153 (362)
T 3goz_A 88 SGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK-------------- 153 (362)
T ss_dssp CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS--------------
T ss_pred cCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH--------------
Confidence 998654444443 4444 899999999999986653 2 333 36999999999862110
Q ss_pred ccccccCCCCCCCC-CCCEEEccCCCCCCCCCCC----CCCCC-CCCcEEEcCCCCCcc-----cCccccC-CCCcCEEe
Q 012173 140 CLVALMLPSLSGLR-SLTKLDLSDCGLGEGAIPS----DIGNL-HSLNELYLSKNNFVT-----LPASINS-LLNLKELE 207 (469)
Q Consensus 140 ~~~~~~~~~l~~l~-~L~~L~Ls~~~l~~~~~p~----~l~~l-~~L~~L~L~~n~l~~-----lp~~i~~-l~~L~~L~ 207 (469)
....++..+..++ +|++|++++|.+.+ ..+. .+..+ ++|+.|+|++|.+.. ++..+.. .++|++|+
T Consensus 154 -~~~~l~~~l~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~ 231 (362)
T 3goz_A 154 -SSDELIQILAAIPANVNSLNLRGNNLAS-KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN 231 (362)
T ss_dssp -CHHHHHHHHHTSCTTCCEEECTTSCGGG-SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEE
T ss_pred -HHHHHHHHHhcCCccccEeeecCCCCch-hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEE
Confidence 0011122223333 78888888887752 2222 23334 478888888888775 5655555 35788888
Q ss_pred ccCCcccCcCC--------CCCCCccEEEecCCC
Q 012173 208 MEDCKRLQSLP--------QLPPNIIFVKVNGCS 233 (469)
Q Consensus 208 L~~c~~L~~lp--------~lp~~L~~L~i~~C~ 233 (469)
|++|. +...+ .-.++|+.|++++|.
T Consensus 232 Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 232 LCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 88874 32221 223567777776664
No 111
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=3.1e-14 Score=124.95 Aligned_cols=105 Identities=24% Similarity=0.324 Sum_probs=70.6
Q ss_pred CCCCCcEEeeeccCCc--ccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCE
Q 012173 14 TMKDLSELNLDGTSIT--EVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEE 91 (469)
Q Consensus 14 ~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~ 91 (469)
..++|++|++++|.+. .+|..++.+++|++|++++|. +..+ ..+..+++|++|++++|.....+|..++.+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3467778888877777 777777777777888877776 5555 55777777777777776554446666666777777
Q ss_pred EeccCcCCCCCC--ccccCCcCCceeeccCC
Q 012173 92 LDISETAVRRPP--SSIFLMKNLRTLSLFGC 120 (469)
Q Consensus 92 L~L~~~~i~~lp--~~l~~l~~L~~L~l~~~ 120 (469)
|++++|.+..+| ..+..+++|++|++++|
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence 777777776654 34445555555555444
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=7.4e-17 Score=169.05 Aligned_cols=181 Identities=17% Similarity=0.172 Sum_probs=142.5
Q ss_pred CcCcccchhcCCCCCCcEEeeeccC--------------CcccCcccCCCCCCCEEe-ccCCCCCcccCc------cCCC
Q 012173 3 LQLKKFPQIVTTMKDLSELNLDGTS--------------ITEVPSSIELLPGLELLN-LNDCKNLARVPS------SING 61 (469)
Q Consensus 3 ~~L~~lp~~~~~l~~L~~L~L~~~~--------------l~~lp~~i~~l~~L~~L~-L~~c~~l~~lp~------~i~~ 61 (469)
|+|+.+|+.++++++|+.|+++++. ....|..++.+++|+.|+ ++.+. +..++. .+..
T Consensus 359 n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~~L~~l~l~~n~i~~ 437 (567)
T 1dce_A 359 EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LDDLRSKFLLENSVLK 437 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHH
T ss_pred hhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cchhhhhhhhcccccc
Confidence 5678999999999999999987653 224466778888999888 44432 222221 0111
Q ss_pred --CCCCCEEEeeCCCCCccccccccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCcc
Q 012173 62 --LKSPKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSS 139 (469)
Q Consensus 62 --L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 139 (469)
...|++|++++| .+..+|. ++.+++|+.|++++|.++.+|..++.+++|+.|++++|...
T Consensus 438 l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~---------------- 499 (567)
T 1dce_A 438 MEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE---------------- 499 (567)
T ss_dssp HHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC----------------
T ss_pred cCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC----------------
Confidence 125999999996 6667887 99999999999999999999999999999999999998621
Q ss_pred ccccccCCCCCCCCCCCEEEccCCCCCCCCC-CCCCCCCCCCcEEEcCCCCCcccCccc----cCCCCcCEEec
Q 012173 140 CLVALMLPSLSGLRSLTKLDLSDCGLGEGAI-PSDIGNLHSLNELYLSKNNFVTLPASI----NSLLNLKELEM 208 (469)
Q Consensus 140 ~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~-p~~l~~l~~L~~L~L~~n~l~~lp~~i----~~l~~L~~L~L 208 (469)
.+| .++.+++|+.|+|++|.+.. .. |..++.+++|+.|+|++|.++.+|..+ ..+++|+.|++
T Consensus 500 ----~lp-~l~~l~~L~~L~Ls~N~l~~-~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 500 ----NVD-GVANLPRLQELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ----CCG-GGTTCSSCCEEECCSSCCCS-SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ----CCc-ccCCCCCCcEEECCCCCCCC-CCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 124 78899999999999999963 33 899999999999999999999887644 34788888864
No 113
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.49 E-value=7.6e-16 Score=157.38 Aligned_cols=85 Identities=21% Similarity=0.258 Sum_probs=45.0
Q ss_pred CCCCCCCCEEEccCCCCCCCCC----CCCCCCCCCCcEEEcCCCCCcc-----cCccccCCCCcCEEeccCCcccC----
Q 012173 149 LSGLRSLTKLDLSDCGLGEGAI----PSDIGNLHSLNELYLSKNNFVT-----LPASINSLLNLKELEMEDCKRLQ---- 215 (469)
Q Consensus 149 l~~l~~L~~L~Ls~~~l~~~~~----p~~l~~l~~L~~L~L~~n~l~~-----lp~~i~~l~~L~~L~L~~c~~L~---- 215 (469)
+..+++|++|++++|.+.+..+ +.....+++|+.|++++|.++. ++..+..+++|++|++++|..-.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 3445666666666665532110 1122345666666666666664 55556666667777776663210
Q ss_pred ----cCCCCCCCccEEEecCCC
Q 012173 216 ----SLPQLPPNIIFVKVNGCS 233 (469)
Q Consensus 216 ----~lp~lp~~L~~L~i~~C~ 233 (469)
.+...+++|+.|++.+|.
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHhccCCccceeeEcCCCC
Confidence 111122466777776664
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=1.6e-14 Score=155.78 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=95.5
Q ss_pred CCCCcEEeeeccCCcccCcccCCCCCCCEEeccC----CCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcC
Q 012173 15 MKDLSELNLDGTSITEVPSSIELLPGLELLNLND----CKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLE 90 (469)
Q Consensus 15 l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~----c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~ 90 (469)
.+.++.|+|.++.+...+..+....+|..+.+.. +..+...|..+..+.+|+.|+|++|. +..+|..+..+++|+
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSC-CSCCCGGGGGCCSCS
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCC
Confidence 3567888888888887776665555555555443 12234557778889999999999865 558888888999999
Q ss_pred EEeccCcCCCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCCC
Q 012173 91 ELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAI 170 (469)
Q Consensus 91 ~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~ 170 (469)
+|+|++|.+..+|..++.+++|++|+|++|... .+|..++.+++|+.|+|++|.+. .+
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--------------------~lp~~~~~l~~L~~L~L~~N~l~--~l 308 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--------------------SLPAELGSCFQLKYFYFFDNMVT--TL 308 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--------------------SCCSSGGGGTTCSEEECCSSCCC--CC
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--------------------ccChhhcCCCCCCEEECCCCCCC--cc
Confidence 999999999999999999999999999988721 34777888999999999999884 58
Q ss_pred CCCCCCCCCCcEEEcCCCCCccc
Q 012173 171 PSDIGNLHSLNELYLSKNNFVTL 193 (469)
Q Consensus 171 p~~l~~l~~L~~L~L~~n~l~~l 193 (469)
|..++.+++|+.|+|++|.++..
T Consensus 309 p~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 309 PWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp CSSTTSCTTCCCEECTTSCCCSH
T ss_pred ChhhhcCCCccEEeCCCCccCCC
Confidence 98899999999999999999843
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=1e-13 Score=121.55 Aligned_cols=132 Identities=21% Similarity=0.218 Sum_probs=78.8
Q ss_pred CCCCCCCEEeccCCCCC-cccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEeccCcCCCC-CCccccCCcCCc
Q 012173 36 ELLPGLELLNLNDCKNL-ARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR-PPSSIFLMKNLR 113 (469)
Q Consensus 36 ~~l~~L~~L~L~~c~~l-~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~-lp~~l~~l~~L~ 113 (469)
...++|++|++++|... ..+|..+..+++|++|++++|. +..+ ..++.+++|++|++++|.+.. +|..+..+++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 34466777777776632 2666666667777777777754 4444 556666667777777666665 444443455555
Q ss_pred eeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCccc
Q 012173 114 TLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL 193 (469)
Q Consensus 114 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l 193 (469)
+|+ +++|.+.....+..+..+++|+.|++++|.++.+
T Consensus 99 ~L~-------------------------------------------Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 135 (168)
T 2ell_A 99 HLN-------------------------------------------LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135 (168)
T ss_dssp EEE-------------------------------------------CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS
T ss_pred EEe-------------------------------------------ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch
Confidence 554 4445443211114556666667777777766666
Q ss_pred Cc----cccCCCCcCEEeccCCc
Q 012173 194 PA----SINSLLNLKELEMEDCK 212 (469)
Q Consensus 194 p~----~i~~l~~L~~L~L~~c~ 212 (469)
|. .+..+++|++|++++|.
T Consensus 136 ~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 136 NDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TTHHHHHHTTCSSCCEETTEETT
T ss_pred HHHHHHHHHhCccCcEecCCCCC
Confidence 65 55666777777776663
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=7.4e-15 Score=158.48 Aligned_cols=157 Identities=17% Similarity=0.147 Sum_probs=98.5
Q ss_pred cCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEeccCcCCCCCCcc
Q 012173 26 TSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSS 105 (469)
Q Consensus 26 ~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~ 105 (469)
+.+...+..+..+++|+.|+|++|. +..+|..+.++++|++|+|++|. +..+|..++.+++|++|+|++|.++.+|..
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~ 288 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAE 288 (727)
T ss_dssp -----------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSS
T ss_pred cceecChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChh
Confidence 3344456667888888888888877 55778777788888888888864 457888888888888888888888888888
Q ss_pred ccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCCCCCCCCCCCC-CcEEE
Q 012173 106 IFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHS-LNELY 184 (469)
Q Consensus 106 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~-L~~L~ 184 (469)
++.+++|++|+|++|.. ..+|..++.+++|+.|+|++|.+. +.+|..+..+.. +..|+
T Consensus 289 ~~~l~~L~~L~L~~N~l--------------------~~lp~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~~~~~~~~l~ 347 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNMV--------------------TTLPWEFGNLCNLQFLGVEGNPLE-KQFLKILTEKSVTGLIFY 347 (727)
T ss_dssp GGGGTTCSEEECCSSCC--------------------CCCCSSTTSCTTCCCEECTTSCCC-SHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCEEECCCCCC--------------------CccChhhhcCCCccEEeCCCCccC-CCChHHHhhcchhhhHHh
Confidence 88888888888887751 233666788888888888888875 445554433211 12356
Q ss_pred cCCCCCc-ccCccccCCCCcCEEeccCC
Q 012173 185 LSKNNFV-TLPASINSLLNLKELEMEDC 211 (469)
Q Consensus 185 L~~n~l~-~lp~~i~~l~~L~~L~L~~c 211 (469)
|++|.++ .+| ..|+.|+++++
T Consensus 348 l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 348 LRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp HHHCCCCCCCC------CC---------
T ss_pred hccCcccCcCc------cccceeEeecc
Confidence 6677665 233 24555555554
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.46 E-value=9.5e-14 Score=119.23 Aligned_cols=106 Identities=23% Similarity=0.349 Sum_probs=94.7
Q ss_pred CCCCCcEEeeeccCCc--ccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCE
Q 012173 14 TMKDLSELNLDGTSIT--EVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEE 91 (469)
Q Consensus 14 ~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~ 91 (469)
..++|+.|++++|.+. .+|..++.+++|++|++++|. +..+ ..+..+++|++|++++|.....+|..++.+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 4588999999999998 889988999999999999986 5566 66899999999999998766668888888999999
Q ss_pred EeccCcCCCCCC--ccccCCcCCceeeccCCC
Q 012173 92 LDISETAVRRPP--SSIFLMKNLRTLSLFGCN 121 (469)
Q Consensus 92 L~L~~~~i~~lp--~~l~~l~~L~~L~l~~~~ 121 (469)
|++++|.+..++ ..+..+++|++|++++|.
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence 999999999875 788999999999999986
No 118
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=1.8e-15 Score=150.03 Aligned_cols=195 Identities=18% Similarity=0.150 Sum_probs=135.3
Q ss_pred CcCcccc-----hhcCCCC-CCcEEeeeccCCccc-CcccCCC-----CCCCEEeccCCCCCcccCcc----CCCC-CCC
Q 012173 3 LQLKKFP-----QIVTTMK-DLSELNLDGTSITEV-PSSIELL-----PGLELLNLNDCKNLARVPSS----INGL-KSP 65 (469)
Q Consensus 3 ~~L~~lp-----~~~~~l~-~L~~L~L~~~~l~~l-p~~i~~l-----~~L~~L~L~~c~~l~~lp~~----i~~L-~sL 65 (469)
+++...+ +.+..++ +|++|+|++|.++.. +..+..+ ++|++|+|++|......+.. +..+ ++|
T Consensus 32 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L 111 (362)
T 3goz_A 32 NNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTI 111 (362)
T ss_dssp SCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred CCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCc
Confidence 4555555 5667788 999999999999865 4444443 99999999999844333332 3344 899
Q ss_pred CEEEeeCCCCCcccccc----ccC-CCCcCEEeccCcCCCC-----CCccccCCc-CCceeeccCCCCCCCccCcccccc
Q 012173 66 KTLNLSGCCKLENVPDT----LGQ-VESLEELDISETAVRR-----PPSSIFLMK-NLRTLSLFGCNGPPSWHLHLPFNL 134 (469)
Q Consensus 66 ~~L~Ls~c~~l~~lp~~----l~~-l~~L~~L~L~~~~i~~-----lp~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~ 134 (469)
++|++++|......+.. +.. .++|++|++++|.+.. ++..+..++ +|++|++++|.....
T Consensus 112 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~--------- 182 (362)
T 3goz_A 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK--------- 182 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS---------
T ss_pred cEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh---------
Confidence 99999998643333333 334 3699999999999883 344555565 999999999862110
Q ss_pred cCCccccccccCCCCCCC-CCCCEEEccCCCCCCCC---CCCCCCC-CCCCcEEEcCCCCCcccCc-----cccCCCCcC
Q 012173 135 MGKSSCLVALMLPSLSGL-RSLTKLDLSDCGLGEGA---IPSDIGN-LHSLNELYLSKNNFVTLPA-----SINSLLNLK 204 (469)
Q Consensus 135 ~~~~~~~~~~~~~~l~~l-~~L~~L~Ls~~~l~~~~---~p~~l~~-l~~L~~L~L~~n~l~~lp~-----~i~~l~~L~ 204 (469)
....+...+..+ ++|+.|++++|.+.+.. ++..+.. .++|+.|+|++|.++..+. .+..+++|+
T Consensus 183 ------~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~ 256 (362)
T 3goz_A 183 ------NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256 (362)
T ss_dssp ------CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCS
T ss_pred ------hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCcc
Confidence 000011123344 58999999999985311 3444444 4589999999999986543 457789999
Q ss_pred EEeccCCc
Q 012173 205 ELEMEDCK 212 (469)
Q Consensus 205 ~L~L~~c~ 212 (469)
.|++++|.
T Consensus 257 ~L~L~~n~ 264 (362)
T 3goz_A 257 TVYLDYDI 264 (362)
T ss_dssp EEEEEHHH
T ss_pred EEEeccCC
Confidence 99999986
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.44 E-value=7.1e-13 Score=119.05 Aligned_cols=127 Identities=26% Similarity=0.394 Sum_probs=65.8
Q ss_pred cEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCcc--CCCCCCCCEEEeeCCCCCccccccccCCCCcCEEeccC
Q 012173 19 SELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSS--INGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISE 96 (469)
Q Consensus 19 ~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~--i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 96 (469)
+.|+++++.++++|..+.. +|++|++++|. +..++.. +..+++|++|++++|...+..|..++.+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 4566666666666654432 56666666554 3333332 44555555555555433333344444455555555544
Q ss_pred cCCCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCCCCCCCCC
Q 012173 97 TAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGN 176 (469)
Q Consensus 97 ~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~ 176 (469)
|.+..++ +..+..+++|+.|++++|++. +..|..+..
T Consensus 88 N~l~~~~------------------------------------------~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~ 124 (192)
T 1w8a_A 88 NKIKEIS------------------------------------------NKMFLGLHQLKTLNLYDNQIS-CVMPGSFEH 124 (192)
T ss_dssp CCCCEEC------------------------------------------SSSSTTCTTCCEEECCSSCCC-EECTTSSTT
T ss_pred CcCCccC------------------------------------------HHHhcCCCCCCEEECCCCcCC-eeCHHHhhc
Confidence 4444322 223444555666666666554 334555666
Q ss_pred CCCCcEEEcCCCCCc
Q 012173 177 LHSLNELYLSKNNFV 191 (469)
Q Consensus 177 l~~L~~L~L~~n~l~ 191 (469)
+++|+.|+|++|.+.
T Consensus 125 l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 125 LNSLTSLNLASNPFN 139 (192)
T ss_dssp CTTCCEEECTTCCBC
T ss_pred CCCCCEEEeCCCCcc
Confidence 666666666666554
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=6.9e-14 Score=120.13 Aligned_cols=128 Identities=18% Similarity=0.202 Sum_probs=78.6
Q ss_pred CCCCCEEeccCCCCC-cccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEeccCcCCCC-CCccccCCcCCcee
Q 012173 38 LPGLELLNLNDCKNL-ARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR-PPSSIFLMKNLRTL 115 (469)
Q Consensus 38 l~~L~~L~L~~c~~l-~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~-lp~~l~~l~~L~~L 115 (469)
.++|+.|++++|... ..+|..+..+++|++|++++|. +..+ ..++.+++|++|++++|.+.. +|..+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~------- 86 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEK------- 86 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHH-------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhh-------
Confidence 356667777766533 2566666666666666666653 3333 445556666666666666554 3333333
Q ss_pred eccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCc
Q 012173 116 SLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA 195 (469)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~ 195 (469)
+++|+.|++++|.+.+...+..++.+++|+.|++++|.++.+|.
T Consensus 87 ------------------------------------l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 87 ------------------------------------CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp ------------------------------------CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred ------------------------------------CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 44555555555555321123567777888888888888887775
Q ss_pred ----cccCCCCcCEEeccC
Q 012173 196 ----SINSLLNLKELEMED 210 (469)
Q Consensus 196 ----~i~~l~~L~~L~L~~ 210 (469)
.+..+++|+.|++++
T Consensus 131 ~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 131 YRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHHHHHCTTCCEETTBC
T ss_pred HHHHHHHHCCCcccccCCC
Confidence 567788888887763
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.42 E-value=1e-12 Score=118.09 Aligned_cols=118 Identities=24% Similarity=0.265 Sum_probs=102.1
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPD 81 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~ 81 (469)
+++|+++|..+. ++|++|+|++|.|+.+|..++.+++|++|+|++|......+..+.++++|++|+|++|......|.
T Consensus 19 ~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~ 96 (193)
T 2wfh_A 19 NKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR 96 (193)
T ss_dssp TSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred CCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHH
Confidence 467899998664 799999999999999999999999999999999884444445689999999999999765555556
Q ss_pred cccCCCCcCEEeccCcCCCCCCcc-ccCCcCCceeeccCCC
Q 012173 82 TLGQVESLEELDISETAVRRPPSS-IFLMKNLRTLSLFGCN 121 (469)
Q Consensus 82 ~l~~l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~l~~~~ 121 (469)
.+..+++|++|++++|.+..+|.. +..+++|+.|++.+|.
T Consensus 97 ~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 97 TFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred HhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 799999999999999999998874 7789999999999876
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.40 E-value=1.2e-12 Score=117.64 Aligned_cols=118 Identities=20% Similarity=0.250 Sum_probs=102.8
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccCcc--cCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVPSS--IELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENV 79 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~--i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~l 79 (469)
.++|+++|..+. .+|++|+|++|.|+.++.. ++.+++|++|+|++|......|..+.++++|++|++++|......
T Consensus 17 ~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 94 (192)
T 1w8a_A 17 GRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS 94 (192)
T ss_dssp TSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC
T ss_pred CCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccC
Confidence 467899998765 4999999999999998764 899999999999999855555888999999999999997665555
Q ss_pred cccccCCCCcCEEeccCcCCCCC-CccccCCcCCceeeccCCC
Q 012173 80 PDTLGQVESLEELDISETAVRRP-PSSIFLMKNLRTLSLFGCN 121 (469)
Q Consensus 80 p~~l~~l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~l~~~~ 121 (469)
|..++.+++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 95 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 95 NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp SSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred HHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 66689999999999999999966 6788899999999999986
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.39 E-value=3.3e-12 Score=114.83 Aligned_cols=57 Identities=21% Similarity=0.361 Sum_probs=27.9
Q ss_pred EEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEeccCcCCCCCC
Q 012173 43 LLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPP 103 (469)
Q Consensus 43 ~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp 103 (469)
+++++++. +..+|..+. .+|++|++++| .+..+|..+..+++|++|++++|.++.++
T Consensus 14 ~l~~~~~~-l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~ 70 (193)
T 2wfh_A 14 VVRCSNKG-LKVLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLS 70 (193)
T ss_dssp EEECTTSC-CSSCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCC
T ss_pred EEEcCCCC-CCcCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeC
Confidence 34444432 344444332 34555555553 33455555555556666666665555443
No 124
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.39 E-value=1.2e-14 Score=148.59 Aligned_cols=210 Identities=20% Similarity=0.195 Sum_probs=134.8
Q ss_pred cchhcCCCCCCcEEeeeccCCccc-CcccC-----CCCCCCEEeccCCCCCc----ccCccCCCCCCCCEEEeeCCCCCc
Q 012173 8 FPQIVTTMKDLSELNLDGTSITEV-PSSIE-----LLPGLELLNLNDCKNLA----RVPSSINGLKSPKTLNLSGCCKLE 77 (469)
Q Consensus 8 lp~~~~~l~~L~~L~L~~~~l~~l-p~~i~-----~l~~L~~L~L~~c~~l~----~lp~~i~~L~sL~~L~Ls~c~~l~ 77 (469)
++..+..+++|++|++++|.+... +..+. .+++|++|++++|.... .++..+..+++|++|++++|..-.
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 566677789999999999988743 22222 46799999999987443 256667788999999999985322
Q ss_pred c----c-cccccCCCCcCEEeccCcCCCC-----CCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCC
Q 012173 78 N----V-PDTLGQVESLEELDISETAVRR-----PPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLP 147 (469)
Q Consensus 78 ~----l-p~~l~~l~~L~~L~L~~~~i~~-----lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (469)
. + +.....+++|++|++++|.++. ++..+..+++|++|++++|..... . ...+..
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~-~--------------~~~l~~ 306 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE-G--------------ARLLCE 306 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH-H--------------HHHHHH
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH-H--------------HHHHHH
Confidence 2 2 2223368999999999999886 677788899999999998862100 0 000000
Q ss_pred CC-CCCCCCCEEEccCCCCCCCC---CCCCCCCCCCCcEEEcCCCCCccc-Cc----cccC-CCCcCEEeccCCcccC--
Q 012173 148 SL-SGLRSLTKLDLSDCGLGEGA---IPSDIGNLHSLNELYLSKNNFVTL-PA----SINS-LLNLKELEMEDCKRLQ-- 215 (469)
Q Consensus 148 ~l-~~l~~L~~L~Ls~~~l~~~~---~p~~l~~l~~L~~L~L~~n~l~~l-p~----~i~~-l~~L~~L~L~~c~~L~-- 215 (469)
.+ ...++|+.|++++|.+.+.. ++..+..+++|+.|+|++|.+... +. .+.. .++|++|++++|.--.
T Consensus 307 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~ 386 (461)
T 1z7x_W 307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS 386 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhh
Confidence 01 12356777777777764321 344455567777777777776632 11 2221 5677777777774221
Q ss_pred --cCCCC---CCCccEEEecCC
Q 012173 216 --SLPQL---PPNIIFVKVNGC 232 (469)
Q Consensus 216 --~lp~l---p~~L~~L~i~~C 232 (469)
.+|.. .++|+.|++++|
T Consensus 387 ~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 387 CSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp HHHHHHHHHHCCCCCEEECCSS
T ss_pred HHHHHHHHHhCCCccEEECCCC
Confidence 23321 356777777766
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=1.3e-12 Score=115.59 Aligned_cols=105 Identities=17% Similarity=0.251 Sum_probs=73.2
Q ss_pred CCCCCCcEEeeeccCCcccCcccCCC-CCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccc-cCCCCcC
Q 012173 13 TTMKDLSELNLDGTSITEVPSSIELL-PGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTL-GQVESLE 90 (469)
Q Consensus 13 ~~l~~L~~L~L~~~~l~~lp~~i~~l-~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l-~~l~~L~ 90 (469)
.++.+|+.|++++|.++.+|. +..+ ++|++|++++|. +..+ ..+..+++|++|++++|. +..+|..+ +.+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCC
Confidence 357888888888888887765 4444 488888888876 5555 457778888888888764 45555444 7778888
Q ss_pred EEeccCcCCCCCCc--cccCCcCCceeeccCCC
Q 012173 91 ELDISETAVRRPPS--SIFLMKNLRTLSLFGCN 121 (469)
Q Consensus 91 ~L~L~~~~i~~lp~--~l~~l~~L~~L~l~~~~ 121 (469)
+|++++|.+..+|. .+..+++|+.|++++|.
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCC
Confidence 88888887777665 55555555655555544
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.33 E-value=3.1e-11 Score=106.57 Aligned_cols=79 Identities=24% Similarity=0.395 Sum_probs=36.0
Q ss_pred CcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCc-cCCCCCCCCEEEeeCCCCCccccc-cccCCCCcCEEecc
Q 012173 18 LSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPS-SINGLKSPKTLNLSGCCKLENVPD-TLGQVESLEELDIS 95 (469)
Q Consensus 18 L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~-~i~~L~sL~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~ 95 (469)
.+.+++++++++.+|..+ .++|++|++++|. +..+|. .+.++++|++|++++|. +..+|. .++.+++|++|+++
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECC
Confidence 345566666666555433 2455555555544 333332 23445555555555432 222222 23344444444444
Q ss_pred CcCCC
Q 012173 96 ETAVR 100 (469)
Q Consensus 96 ~~~i~ 100 (469)
+|.++
T Consensus 85 ~N~l~ 89 (177)
T 2o6r_A 85 ENKLQ 89 (177)
T ss_dssp SSCCC
T ss_pred CCCcc
Confidence 44443
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.30 E-value=2.5e-11 Score=107.17 Aligned_cols=116 Identities=18% Similarity=0.330 Sum_probs=97.9
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccCcc-cCCCCCCCEEeccCCCCCcccCcc-CCCCCCCCEEEeeCCCCCccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNLARVPSS-INGLKSPKTLNLSGCCKLENV 79 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~-i~~L~sL~~L~Ls~c~~l~~l 79 (469)
.++++.+|..+ .++|+.|++++|+++.++.. ++.+++|++|++++|. +..+|.. +..+++|++|++++|.. ..+
T Consensus 16 ~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l-~~~ 91 (177)
T 2o6r_A 16 SKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKL-QSL 91 (177)
T ss_dssp SSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCC
T ss_pred CCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCCc-ccc
Confidence 46788899765 47999999999999988764 6899999999999987 5666654 68899999999999754 455
Q ss_pred c-ccccCCCCcCEEeccCcCCCCCCccc-cCCcCCceeeccCCC
Q 012173 80 P-DTLGQVESLEELDISETAVRRPPSSI-FLMKNLRTLSLFGCN 121 (469)
Q Consensus 80 p-~~l~~l~~L~~L~L~~~~i~~lp~~l-~~l~~L~~L~l~~~~ 121 (469)
| ..++.+++|++|++++|.+..+|..+ ..+++|++|++++|.
T Consensus 92 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 92 PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 4 45789999999999999999998764 679999999999986
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.29 E-value=4e-12 Score=112.36 Aligned_cols=117 Identities=19% Similarity=0.317 Sum_probs=101.0
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccC-CCCCCCCEEEeeCCCCCcccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSI-NGLKSPKTLNLSGCCKLENVP 80 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i-~~L~sL~~L~Ls~c~~l~~lp 80 (469)
.++++.+|......++|++|+|++|.++.+ ..++.+++|++|++++|. +..+|..+ ..+++|++|++++| .++.+|
T Consensus 28 ~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~ 104 (176)
T 1a9n_A 28 GYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNN-SLVELG 104 (176)
T ss_dssp TSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSC-CCCCGG
T ss_pred CCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCC-cCCcch
Confidence 367788877655445999999999999998 569999999999999987 66777655 88999999999997 457788
Q ss_pred c--cccCCCCcCEEeccCcCCCCCCcc----ccCCcCCceeeccCCC
Q 012173 81 D--TLGQVESLEELDISETAVRRPPSS----IFLMKNLRTLSLFGCN 121 (469)
Q Consensus 81 ~--~l~~l~~L~~L~L~~~~i~~lp~~----l~~l~~L~~L~l~~~~ 121 (469)
. .++.+++|+.|++++|.+..+|.. +..+++|+.|++++|.
T Consensus 105 ~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 105 DLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp GGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 6 788999999999999999998885 8899999999998876
No 129
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.29 E-value=4.2e-13 Score=141.42 Aligned_cols=216 Identities=15% Similarity=0.107 Sum_probs=124.7
Q ss_pred CCCCCcEEeeeccCCcc-cCcccCC-CC-CCCEEeccCCCCCc--ccCccCCCCCCCCEEEeeCCCCCcc----cccccc
Q 012173 14 TMKDLSELNLDGTSITE-VPSSIEL-LP-GLELLNLNDCKNLA--RVPSSINGLKSPKTLNLSGCCKLEN----VPDTLG 84 (469)
Q Consensus 14 ~l~~L~~L~L~~~~l~~-lp~~i~~-l~-~L~~L~L~~c~~l~--~lp~~i~~L~sL~~L~Ls~c~~l~~----lp~~l~ 84 (469)
.+++|++|+|+++.++. .+..+.. ++ +|++|+|++|..+. .++..+.++++|++|++++|..... ++....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 67899999999887763 2333444 33 48888888876332 2333234677888888888753222 333445
Q ss_pred CCCCcCEEeccCcCCCC-----CCccccCCcCCceeeccCCCCCCCccC---cccccccCCc----cccccccCCCCCCC
Q 012173 85 QVESLEELDISETAVRR-----PPSSIFLMKNLRTLSLFGCNGPPSWHL---HLPFNLMGKS----SCLVALMLPSLSGL 152 (469)
Q Consensus 85 ~l~~L~~L~L~~~~i~~-----lp~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~~~~----~~~~~~~~~~l~~l 152 (469)
.+++|++|++++|.+.. ++..+.++++|++|++.+|........ ...+..+... .......+..+..+
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 57777888887777652 233445677777777777642110000 0000000000 00011224456667
Q ss_pred CCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCc--ccCccccCCCCcCEEeccCCcccCcCCC---CCCCccEE
Q 012173 153 RSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV--TLPASINSLLNLKELEMEDCKRLQSLPQ---LPPNIIFV 227 (469)
Q Consensus 153 ~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~lp~---lp~~L~~L 227 (469)
++|+.|+++++.. ..+|..+..+++|++|+|++|.++ .++..+..+++|+.|+++++..-..++. -.++|+.|
T Consensus 270 ~~L~~L~l~~~~~--~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 270 RKLCRLGLSYMGP--NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp TTCCEEEETTCCT--TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred ccccccCccccch--hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence 7788888777543 456777777788888888888765 2333456778888888774422222222 13567777
Q ss_pred EecC
Q 012173 228 KVNG 231 (469)
Q Consensus 228 ~i~~ 231 (469)
++.+
T Consensus 348 ~L~~ 351 (592)
T 3ogk_B 348 RIER 351 (592)
T ss_dssp EEEC
T ss_pred Eeec
Confidence 7774
No 130
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.25 E-value=6.4e-13 Score=140.04 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=83.6
Q ss_pred cchhcCCCCCCcEEeeeccCCc-----ccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCC---ccc
Q 012173 8 FPQIVTTMKDLSELNLDGTSIT-----EVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKL---ENV 79 (469)
Q Consensus 8 lp~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l---~~l 79 (469)
++.....+++|++|+|+++.+. .++..+..+++|+.|++++|. +..+|..+.++++|++|+++++... ...
T Consensus 184 l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 262 (592)
T 3ogk_B 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEK 262 (592)
T ss_dssp HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTS
T ss_pred HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHH
Confidence 3444556788999999888775 445556778999999999876 5557777778888888888764433 234
Q ss_pred cccccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCC
Q 012173 80 PDTLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCN 121 (469)
Q Consensus 80 p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~ 121 (469)
+..+..+++|+.|++.++....+|..+..+++|++|++++|.
T Consensus 263 ~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 263 YMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp SSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred HHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence 455677788888888877666777777778888888888776
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.23 E-value=5.4e-14 Score=127.00 Aligned_cols=114 Identities=17% Similarity=0.239 Sum_probs=97.0
Q ss_pred cCcccchhcCCCCCCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccc
Q 012173 4 QLKKFPQIVTTMKDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTL 83 (469)
Q Consensus 4 ~L~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l 83 (469)
.++++|..++.+++|++|+|++|.++.+| .++.+++|++|++++|. +..+|..+..+++|++|++++| .+..+| .+
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~ 111 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN-QIASLS-GI 111 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCC-cCCcCC-cc
Confidence 46777778888999999999999999888 78899999999999986 6688887777789999999997 455666 57
Q ss_pred cCCCCcCEEeccCcCCCCCCc--cccCCcCCceeeccCCC
Q 012173 84 GQVESLEELDISETAVRRPPS--SIFLMKNLRTLSLFGCN 121 (469)
Q Consensus 84 ~~l~~L~~L~L~~~~i~~lp~--~l~~l~~L~~L~l~~~~ 121 (469)
+.+++|++|++++|.+..++. .+..+++|++|++++|.
T Consensus 112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 888999999999999988764 68889999999998876
No 132
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.21 E-value=3e-13 Score=142.53 Aligned_cols=37 Identities=22% Similarity=0.130 Sum_probs=22.4
Q ss_pred CCCCCCcEEEcCCCCCcc--cCccccCCCCcCEEeccCC
Q 012173 175 GNLHSLNELYLSKNNFVT--LPASINSLLNLKELEMEDC 211 (469)
Q Consensus 175 ~~l~~L~~L~L~~n~l~~--lp~~i~~l~~L~~L~L~~c 211 (469)
..+++|+.|+|++|.++. ++..+..+++|+.|++++|
T Consensus 286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 345667777777766542 3333456667777777666
No 133
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.20 E-value=2.5e-13 Score=143.18 Aligned_cols=196 Identities=15% Similarity=0.145 Sum_probs=123.7
Q ss_pred CCCCCcEEeeecc-CCcc--cCcccCCCCCCCEEeccCCCCCc----ccCccCCCCCCCCEEEeeCCC-CC--ccccccc
Q 012173 14 TMKDLSELNLDGT-SITE--VPSSIELLPGLELLNLNDCKNLA----RVPSSINGLKSPKTLNLSGCC-KL--ENVPDTL 83 (469)
Q Consensus 14 ~l~~L~~L~L~~~-~l~~--lp~~i~~l~~L~~L~L~~c~~l~----~lp~~i~~L~sL~~L~Ls~c~-~l--~~lp~~l 83 (469)
.+++|++|+|++| .++. ++..+..+++|++|+|++|.... .++.....+++|++|++++|. .+ ..++..+
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence 5789999999998 6664 56656689999999999987221 244434478899999999886 11 1233334
Q ss_pred cCCCCcCEEeccCc-CCCCCCccccCCcCCceeeccCCCCCCCcc-C---------ccccccc-CCccccccccCCCCCC
Q 012173 84 GQVESLEELDISET-AVRRPPSSIFLMKNLRTLSLFGCNGPPSWH-L---------HLPFNLM-GKSSCLVALMLPSLSG 151 (469)
Q Consensus 84 ~~l~~L~~L~L~~~-~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~-~---------~~~~~~~-~~~~~~~~~~~~~l~~ 151 (469)
..+++|++|++++| .+..++..+..+++|+.|++..+....... + ...+..+ .........++..+..
T Consensus 208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~ 287 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287 (594)
T ss_dssp HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHH
T ss_pred HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHh
Confidence 55799999999988 555667777788899999876553200000 0 0000000 0001111122333335
Q ss_pred CCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCc--ccCccccCCCCcCEEeccC
Q 012173 152 LRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV--TLPASINSLLNLKELEMED 210 (469)
Q Consensus 152 l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~ 210 (469)
+++|++|++++|.+.+..+...+..+++|+.|++++| +. .++.....+++|+.|++.+
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFP 347 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEEC
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEec
Confidence 7889999999998653334444567888999998887 43 2333334578888888843
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.14 E-value=2.8e-10 Score=100.26 Aligned_cols=101 Identities=20% Similarity=0.328 Sum_probs=77.8
Q ss_pred CcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccccc-ccCCCCcCEEeccC
Q 012173 18 LSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDT-LGQVESLEELDISE 96 (469)
Q Consensus 18 L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~L~~ 96 (469)
-+.++++++.++.+|..+. ++|++|+|++|......|..+.++++|++|+|++| .+..+|.. ++.+++|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 3678888888888887664 78888888887744444667788888888888886 55566654 57888888888888
Q ss_pred cCCCCCCcc-ccCCcCCceeeccCCC
Q 012173 97 TAVRRPPSS-IFLMKNLRTLSLFGCN 121 (469)
Q Consensus 97 ~~i~~lp~~-l~~l~~L~~L~l~~~~ 121 (469)
|.+..+|.. +..+++|++|++++|.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CccceeCHHHhccccCCCEEEeCCCC
Confidence 888888765 7778888888888876
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.14 E-value=1.4e-13 Score=124.28 Aligned_cols=88 Identities=22% Similarity=0.329 Sum_probs=45.7
Q ss_pred CcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEeccCcCCCCCCcccc
Q 012173 28 ITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSIF 107 (469)
Q Consensus 28 l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~ 107 (469)
++++|..++.+++|++|++++|. +..+| .+.++++|++|++++| .+..+|..++.+++|++|++++|.+..+| .+.
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~ 112 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIE 112 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccc
Confidence 34444456666666666666654 44455 4555566666666654 23345554444555555555555555443 344
Q ss_pred CCcCCceeeccC
Q 012173 108 LMKNLRTLSLFG 119 (469)
Q Consensus 108 ~l~~L~~L~l~~ 119 (469)
.+++|++|++++
T Consensus 113 ~l~~L~~L~l~~ 124 (198)
T 1ds9_A 113 KLVNLRVLYMSN 124 (198)
T ss_dssp HHHHSSEEEESE
T ss_pred cCCCCCEEECCC
Confidence 444444444443
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.14 E-value=2.8e-10 Score=99.86 Aligned_cols=102 Identities=20% Similarity=0.326 Sum_probs=78.0
Q ss_pred CCcEEeeeccCCcccCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccccc-cccCCCCcCEEecc
Q 012173 17 DLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVPD-TLGQVESLEELDIS 95 (469)
Q Consensus 17 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~ 95 (469)
..+.|+++++.++.+|..+. ++|++|+|++|......|..+.++++|++|+|++|. +..+|. .+..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECC
Confidence 35678888888888887663 788888888877444446668888888888888864 455554 45788888888888
Q ss_pred CcCCCCCCcc-ccCCcCCceeeccCCC
Q 012173 96 ETAVRRPPSS-IFLMKNLRTLSLFGCN 121 (469)
Q Consensus 96 ~~~i~~lp~~-l~~l~~L~~L~l~~~~ 121 (469)
+|.+..+|.. +..+++|++|++++|.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 8888888764 7788888888888876
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.09 E-value=3.4e-10 Score=99.76 Aligned_cols=103 Identities=22% Similarity=0.387 Sum_probs=87.3
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCccc-CcccCCCCCCCEEeccCCCCCcccCcc-CCCCCCCCEEEeeCCCCCccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNLARVPSS-INGLKSPKTLNLSGCCKLENV 79 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~-i~~L~sL~~L~Ls~c~~l~~l 79 (469)
+++|+.+|..+. ++|++|+|++|.|+.+ |..++.+++|++|+|++|. +..+|.. +.++++|++|+|++| .+..+
T Consensus 21 ~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N-~l~~l 96 (174)
T 2r9u_A 21 NIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN-HLKSI 96 (174)
T ss_dssp SSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCC
T ss_pred CCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC-cccee
Confidence 467899998764 8999999999999988 6678999999999999986 7777765 578999999999996 55666
Q ss_pred ccc-ccCCCCcCEEeccCcCCCCCCccccC
Q 012173 80 PDT-LGQVESLEELDISETAVRRPPSSIFL 108 (469)
Q Consensus 80 p~~-l~~l~~L~~L~L~~~~i~~lp~~l~~ 108 (469)
|.. ++.+++|++|++++|.+...+..+..
T Consensus 97 ~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~ 126 (174)
T 2r9u_A 97 PRGAFDNLKSLTHIYLYNNPWDCECRDIMY 126 (174)
T ss_dssp CTTTTTTCTTCSEEECCSSCBCTTBGGGHH
T ss_pred CHHHhccccCCCEEEeCCCCcccccccHHH
Confidence 654 89999999999999999877664443
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.07 E-value=7.8e-10 Score=97.00 Aligned_cols=99 Identities=21% Similarity=0.315 Sum_probs=83.9
Q ss_pred CCcCcccchhcCCCCCCcEEeeeccCCccc-CcccCCCCCCCEEeccCCCCCcccCcc-CCCCCCCCEEEeeCCCCCccc
Q 012173 2 RLQLKKFPQIVTTMKDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNLARVPSS-INGLKSPKTLNLSGCCKLENV 79 (469)
Q Consensus 2 ~~~L~~lp~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~-i~~L~sL~~L~Ls~c~~l~~l 79 (469)
+++|+++|..+. ++|++|+|++|.|+.+ |..++.+++|++|+|++|. +..+|.. +.++++|++|+|++|. +..+
T Consensus 18 ~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~-l~~~ 93 (170)
T 3g39_A 18 GKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQ-LKSI 93 (170)
T ss_dssp TSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCC
T ss_pred CCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCc-cCEe
Confidence 467899998764 8999999999999988 6678999999999999987 6666665 5799999999999974 5566
Q ss_pred cc-cccCCCCcCEEeccCcCCCCCCc
Q 012173 80 PD-TLGQVESLEELDISETAVRRPPS 104 (469)
Q Consensus 80 p~-~l~~l~~L~~L~L~~~~i~~lp~ 104 (469)
|. .+..+++|++|++++|.+...+.
T Consensus 94 ~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 94 PRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 55 58899999999999998876544
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.02 E-value=1.1e-09 Score=106.73 Aligned_cols=192 Identities=16% Similarity=0.162 Sum_probs=121.6
Q ss_pred CCCCcEEeeeccCCc--------------------ccCc-ccCC--------CCCCCEEeccCCCCCcccCc-cCCCCCC
Q 012173 15 MKDLSELNLDGTSIT--------------------EVPS-SIEL--------LPGLELLNLNDCKNLARVPS-SINGLKS 64 (469)
Q Consensus 15 l~~L~~L~L~~~~l~--------------------~lp~-~i~~--------l~~L~~L~L~~c~~l~~lp~-~i~~L~s 64 (469)
+++|+.|+|++|++. .+|. .|.+ +++|+.|+|.+ .+..++. .+.++++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCcc
Confidence 688999999998877 3332 3456 88999999987 4666665 4778899
Q ss_pred CCEEEeeCCCCCccccccccCCCCcCEEeccCcCC----CCCC-----------------------ccc-----------
Q 012173 65 PKTLNLSGCCKLENVPDTLGQVESLEELDISETAV----RRPP-----------------------SSI----------- 106 (469)
Q Consensus 65 L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i----~~lp-----------------------~~l----------- 106 (469)
|+.|++.++.....-+..+..+.++..+.+..... ..+. ..+
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 99999988654333334455555666665544110 0000 000
Q ss_pred -----------------cCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEEEccCCCCCCCC
Q 012173 107 -----------------FLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGA 169 (469)
Q Consensus 107 -----------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ 169 (469)
..+++|+.|++.+|.. .......+.++++|+.|++.++ +. ..
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i-------------------~~I~~~aF~~~~~L~~l~l~~n-i~-~I 264 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNA-------------------TTIPDFTFAQKKYLLKIKLPHN-LK-TI 264 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCC-------------------CEECTTTTTTCTTCCEEECCTT-CC-EE
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCc-------------------ceecHhhhhCCCCCCEEECCcc-cc-ee
Confidence 0256777777766541 1122446788889999999887 43 22
Q ss_pred CCCCCCCCCCCc-EEEcCCCCCcccC-ccccCCCCcCEEeccCCcccCcCCCCCCCccEEEecCCCCCccc
Q 012173 170 IPSDIGNLHSLN-ELYLSKNNFVTLP-ASINSLLNLKELEMEDCKRLQSLPQLPPNIIFVKVNGCSSLVTL 238 (469)
Q Consensus 170 ~p~~l~~l~~L~-~L~L~~n~l~~lp-~~i~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L~i~~C~~L~~l 238 (469)
-+..|..+++|+ .+++.+ +++.++ ..+.+|++|+.|++.++ .++.|+.-. ..+|++|+.+
T Consensus 265 ~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~a-------F~~~~~L~~l 326 (329)
T 3sb4_A 265 GQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDEL-------FGNGVPSKLI 326 (329)
T ss_dssp CTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTT-------TCTTCCCCEE
T ss_pred hHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCC-ccCccchhh-------hcCCcchhhh
Confidence 345678888998 999988 777776 46788899999988763 344444311 3456666654
No 140
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.90 E-value=5.1e-09 Score=102.58 Aligned_cols=101 Identities=17% Similarity=0.178 Sum_probs=77.5
Q ss_pred EEeeecc-CCcccCcccCCCCCCCEEeccCCCCCcccC-ccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEeccCc
Q 012173 20 ELNLDGT-SITEVPSSIELLPGLELLNLNDCKNLARVP-SSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISET 97 (469)
Q Consensus 20 ~L~L~~~-~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~ 97 (469)
.++++++ +++.+|. +..+++|++|+|+++..+..+| ..+.+|++|++|+|++|...+..|..++++++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4677777 7888888 8888888888888633366665 56888888899998887544444556788888999999998
Q ss_pred CCCCCCccccCCcCCceeeccCCC
Q 012173 98 AVRRPPSSIFLMKNLRTLSLFGCN 121 (469)
Q Consensus 98 ~i~~lp~~l~~l~~L~~L~l~~~~ 121 (469)
.+..+|..+.....|+.|++.+|.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred ccceeCHHHcccCCceEEEeeCCC
Confidence 888887766554458888888776
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.88 E-value=5.6e-09 Score=102.31 Aligned_cols=98 Identities=20% Similarity=0.168 Sum_probs=81.7
Q ss_pred CcCcccchhcCCCCCCcEEeeec-cCCcccC-cccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCcccc
Q 012173 3 LQLKKFPQIVTTMKDLSELNLDG-TSITEVP-SSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENVP 80 (469)
Q Consensus 3 ~~L~~lp~~~~~l~~L~~L~L~~-~~l~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp 80 (469)
|+|+.+|. ++.+++|++|+|++ |.|..++ ..|+.|++|++|+|++|......|..+.+|++|++|+|++| .+..+|
T Consensus 19 n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~ 96 (347)
T 2ifg_A 19 GALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLS 96 (347)
T ss_dssp CCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCC
T ss_pred CCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeC
Confidence 37999999 99999999999997 9999887 57999999999999998744444556899999999999996 566777
Q ss_pred ccccCCCCcCEEeccCcCCCCC
Q 012173 81 DTLGQVESLEELDISETAVRRP 102 (469)
Q Consensus 81 ~~l~~l~~L~~L~L~~~~i~~l 102 (469)
..+.....|+.|+|.+|.+...
T Consensus 97 ~~~~~~~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 97 WKTVQGLSLQELVLSGNPLHCS 118 (347)
T ss_dssp STTTCSCCCCEEECCSSCCCCC
T ss_pred HHHcccCCceEEEeeCCCccCC
Confidence 6554444499999999988754
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.85 E-value=5.6e-09 Score=101.60 Aligned_cols=207 Identities=16% Similarity=0.243 Sum_probs=123.5
Q ss_pred CCCCcEEeeecc-CCcccCcccCC-CCCCCEEeccCCCCC--c-----------------ccCc-cCCC--------CCC
Q 012173 15 MKDLSELNLDGT-SITEVPSSIEL-LPGLELLNLNDCKNL--A-----------------RVPS-SING--------LKS 64 (469)
Q Consensus 15 l~~L~~L~L~~~-~l~~lp~~i~~-l~~L~~L~L~~c~~l--~-----------------~lp~-~i~~--------L~s 64 (469)
+++|+.|.++++ .-..+. .+.. +++|+.|||++|... . .+|. .+.+ +++
T Consensus 24 ~~~l~~L~l~g~i~~~~~~-~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~ 102 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFR-HLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQT 102 (329)
T ss_dssp HHHCSEEEEEEEECHHHHH-HHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTT
T ss_pred hCceeEEEEeccccHHHHH-HHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCC
Confidence 567999999985 212221 1222 899999999998744 0 2332 3455 788
Q ss_pred CCEEEeeCCCCCccccc-cccCCCCcCEEeccCcCCCCCCc-cccCCcCCceeeccCCC------CCCCccCc--cccc-
Q 012173 65 PKTLNLSGCCKLENVPD-TLGQVESLEELDISETAVRRPPS-SIFLMKNLRTLSLFGCN------GPPSWHLH--LPFN- 133 (469)
Q Consensus 65 L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~l~~~~------~~~~~~~~--~~~~- 133 (469)
|+.|++.+ .+..++. .+..+++|+.|++..+.+..++. .+..+.++..+.+.... ......+. ..+.
T Consensus 103 L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~ 180 (329)
T 3sb4_A 103 LEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET 180 (329)
T ss_dssp CCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred CcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence 88888887 5566654 47788888888888887765543 34444455555443210 00000000 0000
Q ss_pred ---c----------cCC---ccc-----ccccc----CCCC-CCCCCCCEEEccCCCCCCCCCCC-CCCCCCCCcEEEcC
Q 012173 134 ---L----------MGK---SSC-----LVALM----LPSL-SGLRSLTKLDLSDCGLGEGAIPS-DIGNLHSLNELYLS 186 (469)
Q Consensus 134 ---~----------~~~---~~~-----~~~~~----~~~l-~~l~~L~~L~Ls~~~l~~~~~p~-~l~~l~~L~~L~L~ 186 (469)
. ... ... ..+.+ ...+ ..+++|+.|++++|++. .+|. .+..+++|+.|+|.
T Consensus 181 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~--~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 181 TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT--TIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC--EECTTTTTTCTTCCEEECC
T ss_pred eEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc--eecHhhhhCCCCCCEEECC
Confidence 0 000 000 00000 0000 13789999999999885 2554 68899999999999
Q ss_pred CCCCcccCc-cccCCCCcC-EEeccCCcccCcCCCC----CCCccEEEe
Q 012173 187 KNNFVTLPA-SINSLLNLK-ELEMEDCKRLQSLPQL----PPNIIFVKV 229 (469)
Q Consensus 187 ~n~l~~lp~-~i~~l~~L~-~L~L~~c~~L~~lp~l----p~~L~~L~i 229 (469)
+| ++.++. .+..+++|+ .|++.+ .++.|+.- .++|+.+++
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEE
T ss_pred cc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEe
Confidence 97 888876 568899999 999987 56666532 245555554
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.78 E-value=2.4e-07 Score=92.61 Aligned_cols=202 Identities=13% Similarity=0.159 Sum_probs=130.7
Q ss_pred CCcCcccch-hcCCCCCCcEEeeeccCCcccC-cccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccc
Q 012173 2 RLQLKKFPQ-IVTTMKDLSELNLDGTSITEVP-SSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENV 79 (469)
Q Consensus 2 ~~~L~~lp~-~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~l 79 (469)
.+.++.+++ .+.+ .+|+.+.|.. +++.++ ..+.++++|+.+++.++. +..+|.......+|+.+.+.. .+..+
T Consensus 143 ~~~i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~--~l~~I 217 (401)
T 4fdw_A 143 NEGLKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPV--TLKEI 217 (401)
T ss_dssp CTTCCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCT--TCCEE
T ss_pred CCCccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCC--chhee
Confidence 345677776 3444 4799998875 677774 568889999999998754 777877666678999999975 36665
Q ss_pred cc-cccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCEE
Q 012173 80 PD-TLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKL 158 (469)
Q Consensus 80 p~-~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 158 (469)
+. .+.++.+|+.+++..+ +..++.....-.+|+.+.+.++- ...-...+.+|++|+.+
T Consensus 218 ~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~i--------------------~~I~~~aF~~c~~L~~l 276 (401)
T 4fdw_A 218 GSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNGV--------------------TNIASRAFYYCPELAEV 276 (401)
T ss_dssp CTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETTC--------------------CEECTTTTTTCTTCCEE
T ss_pred hhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCCc--------------------cEEChhHhhCCCCCCEE
Confidence 54 4678889999998764 55554443334778888874321 11114456777888888
Q ss_pred EccCCCCCCC----CCCCCCCCCCCCcEEEcCCCCCcccCc-cccCCCCcCEEeccCCcccCcCCCCC---CCccEEEec
Q 012173 159 DLSDCGLGEG----AIPSDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCKRLQSLPQLP---PNIIFVKVN 230 (469)
Q Consensus 159 ~Ls~~~l~~~----~~p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~lp---~~L~~L~i~ 230 (469)
++.++.+... .-...+..+++|+.+.|. ++++.++. .+.+|++|+.+.|... ++.|+.-. -+|+.+.+.
T Consensus 277 ~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~~L~~l~l~ 353 (401)
T 4fdw_A 277 TTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNTGIKEVKVE 353 (401)
T ss_dssp EEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSSCCCEEEEC
T ss_pred EeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCCCCCEEEEc
Confidence 8877654210 123456777888888887 44666654 4566777888877543 44443210 155555555
Q ss_pred CC
Q 012173 231 GC 232 (469)
Q Consensus 231 ~C 232 (469)
+.
T Consensus 354 ~n 355 (401)
T 4fdw_A 354 GT 355 (401)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.78 E-value=6.6e-11 Score=117.36 Aligned_cols=61 Identities=25% Similarity=0.291 Sum_probs=29.2
Q ss_pred CCCCCCEEEccCCCCCCC---CCCCCCCCCCCCcEEEcCCCCCcc-----cCccccCCCCcCEEeccCC
Q 012173 151 GLRSLTKLDLSDCGLGEG---AIPSDIGNLHSLNELYLSKNNFVT-----LPASINSLLNLKELEMEDC 211 (469)
Q Consensus 151 ~l~~L~~L~Ls~~~l~~~---~~p~~l~~l~~L~~L~L~~n~l~~-----lp~~i~~l~~L~~L~L~~c 211 (469)
.+++|++|+|++|.+.+. .+...+...++|+.|+|++|.++. +...+...+.|++|+|++|
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 344555555555554311 112233444555555665555542 2333344555666666655
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.77 E-value=3.2e-07 Score=91.67 Aligned_cols=186 Identities=12% Similarity=0.174 Sum_probs=129.6
Q ss_pred CCCcCcccch-hcCCCCCCcEEeeeccCCcccCc-ccCCCCCCCEEeccCCCCCcccC-ccCCCCCCCCEEEeeCCCCCc
Q 012173 1 MRLQLKKFPQ-IVTTMKDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNLARVP-SSINGLKSPKTLNLSGCCKLE 77 (469)
Q Consensus 1 ~~~~L~~lp~-~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp-~~i~~L~sL~~L~Ls~c~~l~ 77 (469)
+.+.++.+++ .+.++ +|+.+.|..+ ++.++. .+.+ .+|+.+.+.. .+..++ ..+.++.+|+.+++.++ .+.
T Consensus 120 ip~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n-~l~ 193 (401)
T 4fdw_A 120 LPNSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT-KIT 193 (401)
T ss_dssp CCTTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTS-CCS
T ss_pred ECCccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeecCCC-cce
Confidence 3466777776 45554 7999998765 777754 4555 4799999986 466665 45788999999999874 677
Q ss_pred cccccccCCCCcCEEeccCcCCCCCC-ccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCC
Q 012173 78 NVPDTLGQVESLEELDISETAVRRPP-SSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLT 156 (469)
Q Consensus 78 ~lp~~l~~l~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 156 (469)
.++...-...+|+.+.+..+ +..++ ..+..+++|+.+.+..+-. ..-...+.+ .+|+
T Consensus 194 ~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~--------------------~I~~~aF~~-~~L~ 251 (401)
T 4fdw_A 194 KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVS--------------------TIGQEAFRE-SGIT 251 (401)
T ss_dssp EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCC--------------------EECTTTTTT-CCCS
T ss_pred EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCcc--------------------Ccccccccc-CCcc
Confidence 77766555789999999854 65554 3466788999998865311 011233444 6899
Q ss_pred EEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCc-----ccCc-cccCCCCcCEEeccCCcccCcCC
Q 012173 157 KLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-----TLPA-SINSLLNLKELEMEDCKRLQSLP 218 (469)
Q Consensus 157 ~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~-----~lp~-~i~~l~~L~~L~L~~c~~L~~lp 218 (469)
.+.+..+ +. ..-...+..+++|+.+.+.++.+. .++. .+..|++|+.+.|.+ .++.|+
T Consensus 252 ~i~lp~~-i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~ 315 (401)
T 4fdw_A 252 TVKLPNG-VT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILG 315 (401)
T ss_dssp EEEEETT-CC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEEC
T ss_pred EEEeCCC-cc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEh
Confidence 9999544 32 222457888999999999888765 4543 667889999998874 355554
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.67 E-value=2.9e-10 Score=112.73 Aligned_cols=163 Identities=20% Similarity=0.200 Sum_probs=107.0
Q ss_pred CCCCcEEeeeccCCccc-----CcccC-CCCCCCEEeccCCCCCcccCccC-CCCCCCCEEEeeCCCCCccc----cccc
Q 012173 15 MKDLSELNLDGTSITEV-----PSSIE-LLPGLELLNLNDCKNLARVPSSI-NGLKSPKTLNLSGCCKLENV----PDTL 83 (469)
Q Consensus 15 l~~L~~L~L~~~~l~~l-----p~~i~-~l~~L~~L~L~~c~~l~~lp~~i-~~L~sL~~L~Ls~c~~l~~l----p~~l 83 (469)
+++|+.|+|++|.++.. ...+. ..++|++|+|++|.....-...+ ..+++|++|+|++|..-..- ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46789999999988742 23333 33789999999987432211112 23568899999997543322 2222
Q ss_pred -cCCCCcCEEeccCcCCCC-----CCccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCCCCCCCCCE
Q 012173 84 -GQVESLEELDISETAVRR-----PPSSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTK 157 (469)
Q Consensus 84 -~~l~~L~~L~L~~~~i~~-----lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 157 (469)
...++|++|++++|.+.. ++..+..+++|++|++++|.... .....+...+...++|++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~---------------~g~~~L~~~L~~~~~L~~ 215 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD---------------EGLELLAAQLDRNRQLQE 215 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHH---------------HHHHHHHHHGGGCSCCCE
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCc---------------HHHHHHHHHHhcCCCcCe
Confidence 346789999999998763 45556778889999998886210 001122334556678999
Q ss_pred EEccCCCCCCC---CCCCCCCCCCCCcEEEcCCCCCcc
Q 012173 158 LDLSDCGLGEG---AIPSDIGNLHSLNELYLSKNNFVT 192 (469)
Q Consensus 158 L~Ls~~~l~~~---~~p~~l~~l~~L~~L~L~~n~l~~ 192 (469)
|+|++|.+.+. .+...+...++|+.|+|++|.++.
T Consensus 216 L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 216 LNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred EECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 99999988532 233345556889999999998873
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.64 E-value=4e-09 Score=103.91 Aligned_cols=166 Identities=16% Similarity=0.168 Sum_probs=92.8
Q ss_pred cCcccCCCCCCCEEeccCCCC---------CcccCccCCCCCCCCEEEeeCCCCCccccccccCCCCcCEEeccCcCCCC
Q 012173 31 VPSSIELLPGLELLNLNDCKN---------LARVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR 101 (469)
Q Consensus 31 lp~~i~~l~~L~~L~L~~c~~---------l~~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~ 101 (469)
+..++..+++|+.|.+.+... ...++..+..+++|+.|.+++|..+ .++. + .+++|++|++..+.+..
T Consensus 131 L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~ 207 (362)
T 2ra8_A 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPD 207 (362)
T ss_dssp HHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCH
T ss_pred HHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCCh
Confidence 344455667777777654321 0112233345677888888776333 2333 2 26778888877766542
Q ss_pred C-Cccc--cCCcCCceeeccCCCCCCCccCcccccccCCccccccccCCCC--CCCCCCCEEEccCCCCCCCCCCCC---
Q 012173 102 P-PSSI--FLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLPSL--SGLRSLTKLDLSDCGLGEGAIPSD--- 173 (469)
Q Consensus 102 l-p~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~Ls~~~l~~~~~p~~--- 173 (469)
- ...+ ..+++|+.|+|+.+...... ......+.+.+ ..+++|+.|+|.+|.+.+. .+..
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~------------~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~-~~~~la~ 274 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGF------------DGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNV-VVEMFLE 274 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTC------------CSCGGGTGGGSCTTTCTTCCEEEEESCTTHHH-HHHHHHH
T ss_pred HHHHHHHHccCCCCcEEEEecccccccc------------chhHHHHHHHHhcCCCCCcCEEeCCCCCCchH-HHHHHHh
Confidence 1 1122 25777888877532110000 00000000111 3578899999988876421 1111
Q ss_pred CCCCCCCcEEEcCCCCCcc-----cCccccCCCCcCEEeccCCc
Q 012173 174 IGNLHSLNELYLSKNNFVT-----LPASINSLLNLKELEMEDCK 212 (469)
Q Consensus 174 l~~l~~L~~L~L~~n~l~~-----lp~~i~~l~~L~~L~L~~c~ 212 (469)
...+++|+.|+|+.|.+.. ++..+..+++|+.|+|++|.
T Consensus 275 a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 275 SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 1346889999999888873 45555678899999998874
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.54 E-value=1.9e-08 Score=98.97 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=76.2
Q ss_pred cCCCCCCCCEEEeeCCCC---------CccccccccCCCCcCEEeccCcCCCCCCccccCCcCCceeeccCCCCCCCccC
Q 012173 58 SINGLKSPKTLNLSGCCK---------LENVPDTLGQVESLEELDISETAVRRPPSSIFLMKNLRTLSLFGCNGPPSWHL 128 (469)
Q Consensus 58 ~i~~L~sL~~L~Ls~c~~---------l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~ 128 (469)
++.++++|+.|.+.+... ...++..+..+++|+.|++.++.-..++. + .+++|++|++..|.....
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~--- 208 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDS--- 208 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHH---
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChH---
Confidence 344566777777754311 01233444566777777777663223333 2 367777777765541100
Q ss_pred cccccccCCccccccccCCCC--CCCCCCCEEEccCC--CC-CCC---CCCCCC--CCCCCCcEEEcCCCCCcc-cCccc
Q 012173 129 HLPFNLMGKSSCLVALMLPSL--SGLRSLTKLDLSDC--GL-GEG---AIPSDI--GNLHSLNELYLSKNNFVT-LPASI 197 (469)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~Ls~~--~l-~~~---~~p~~l--~~l~~L~~L~L~~n~l~~-lp~~i 197 (469)
....+ ..+++|+.|+|+.+ .. .+. .+...+ ..+++|+.|+|.+|.+.. .+..+
T Consensus 209 ----------------~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l 272 (362)
T 2ra8_A 209 ----------------VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF 272 (362)
T ss_dssp ----------------HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH
T ss_pred ----------------HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH
Confidence 00011 24567777776532 11 000 011112 246777777777776652 11111
Q ss_pred ---cCCCCcCEEeccCCcccCc-----CCCC---CCCccEEEecCC
Q 012173 198 ---NSLLNLKELEMEDCKRLQS-----LPQL---PPNIIFVKVNGC 232 (469)
Q Consensus 198 ---~~l~~L~~L~L~~c~~L~~-----lp~l---p~~L~~L~i~~C 232 (469)
..+++|++|+|+.|. +.. ++.. .++|+.|++++|
T Consensus 273 a~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 273 LESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp HHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCC
Confidence 246677777777653 322 2221 246666666655
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.03 E-value=1.1e-06 Score=77.92 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=86.3
Q ss_pred hhcCCCCCCcEEeeecc-CCcc-----cCcccCCCCCCCEEeccCCCCCc----ccCccCCCCCCCCEEEeeCCCCCcc-
Q 012173 10 QIVTTMKDLSELNLDGT-SITE-----VPSSIELLPGLELLNLNDCKNLA----RVPSSINGLKSPKTLNLSGCCKLEN- 78 (469)
Q Consensus 10 ~~~~~l~~L~~L~L~~~-~l~~-----lp~~i~~l~~L~~L~L~~c~~l~----~lp~~i~~L~sL~~L~Ls~c~~l~~- 78 (469)
..+...++|++|+|++| .+.. +...+...++|++|+|++|..-. .+...+...++|++|+|++|..-..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 45567889999999999 8863 55667888999999999988432 2344455568899999999764432
Q ss_pred ---ccccccCCCCcCEEec--cCcCCCC-----CCccccCCcCCceeeccCCC
Q 012173 79 ---VPDTLGQVESLEELDI--SETAVRR-----PPSSIFLMKNLRTLSLFGCN 121 (469)
Q Consensus 79 ---lp~~l~~l~~L~~L~L--~~~~i~~-----lp~~l~~l~~L~~L~l~~~~ 121 (469)
+...+...++|++|++ ++|.+.. +...+...++|++|++++|.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 5667778889999999 8898873 44566677899999998876
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.92 E-value=5.8e-06 Score=72.02 Aligned_cols=85 Identities=20% Similarity=0.292 Sum_probs=37.8
Q ss_pred CCCEEeccCCCCCcccCccCCCCCCCCEEEeeCCCCCccc-cccccCC----CCcCEEeccCcC-CCCC-CccccCCcCC
Q 012173 40 GLELLNLNDCKNLARVPSSINGLKSPKTLNLSGCCKLENV-PDTLGQV----ESLEELDISETA-VRRP-PSSIFLMKNL 112 (469)
Q Consensus 40 ~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~Ls~c~~l~~l-p~~l~~l----~~L~~L~L~~~~-i~~l-p~~l~~l~~L 112 (469)
+|+.||+++|.....--..+.++++|++|+|++|..++.- -..++.+ ++|++|++++|. |+.- -..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 4555555555421111112344555555555555444321 1112222 245555555542 4311 1234456666
Q ss_pred ceeeccCCCCCC
Q 012173 113 RTLSLFGCNGPP 124 (469)
Q Consensus 113 ~~L~l~~~~~~~ 124 (469)
++|++++|....
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 666666666543
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.89 E-value=7.6e-07 Score=78.91 Aligned_cols=59 Identities=12% Similarity=0.131 Sum_probs=30.7
Q ss_pred CCCCEEEccCCCCCCCC---CCCCCCCCCCCcEEEc--CCCCCc-----ccCccccCCCCcCEEeccCC
Q 012173 153 RSLTKLDLSDCGLGEGA---IPSDIGNLHSLNELYL--SKNNFV-----TLPASINSLLNLKELEMEDC 211 (469)
Q Consensus 153 ~~L~~L~Ls~~~l~~~~---~p~~l~~l~~L~~L~L--~~n~l~-----~lp~~i~~l~~L~~L~L~~c 211 (469)
++|++|+|++|.+.+.. +...+...++|+.|+| ++|.+. .+...+...+.|++|+|++|
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 44555555555553211 2333444556666666 556655 23344445566666666655
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.88 E-value=0.00025 Score=70.36 Aligned_cols=81 Identities=19% Similarity=0.178 Sum_probs=39.1
Q ss_pred CCCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCc-cccCCCCcCEEeccCCcccCcCCCCCCCccE
Q 012173 148 SLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCKRLQSLPQLPPNIIF 226 (469)
Q Consensus 148 ~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~lp~~L~~ 226 (469)
.+..+.+|+.+.+..+ +. ..-...+..+.+|+.++|.. .++.+.. .+.+|.+|+.+.+... ++.|+.-
T Consensus 292 ~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~------ 360 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS--LRKIGAN------ 360 (394)
T ss_dssp TTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTT------
T ss_pred cccccccccccccccc-cc-eechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc--ccEehHH------
Confidence 3445566666666543 21 11123455566666666643 2444433 3445555555554321 2222211
Q ss_pred EEecCCCCCccccc
Q 012173 227 VKVNGCSSLVTLLG 240 (469)
Q Consensus 227 L~i~~C~~L~~l~~ 240 (469)
-..+|.+|+.+..
T Consensus 361 -aF~~C~~L~~i~l 373 (394)
T 4fs7_A 361 -AFQGCINLKKVEL 373 (394)
T ss_dssp -TBTTCTTCCEEEE
T ss_pred -HhhCCCCCCEEEE
Confidence 1456777766644
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.85 E-value=0.00037 Score=69.04 Aligned_cols=61 Identities=15% Similarity=0.290 Sum_probs=39.4
Q ss_pred CCCCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCc-cccCCCCcCEEeccC
Q 012173 147 PSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMED 210 (469)
Q Consensus 147 ~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~ 210 (469)
..+.++..|+.+.+...... .-...+..+++|+.+.+. +.++.++. .+.++.+|+.+.|..
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~--I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~ 320 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS--IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE 320 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE--ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT
T ss_pred ceeeecccccEEecccccce--ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC
Confidence 35667788888887655331 123456677888888875 45666655 456677888887753
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.83 E-value=1e-05 Score=70.51 Aligned_cols=95 Identities=17% Similarity=0.244 Sum_probs=68.2
Q ss_pred ccchhcCCCCCCcEEeeeccCCccc-CcccCCCCCCCEEeccCCCCCccc-CccCCCC----CCCCEEEeeCCCCCccc-
Q 012173 7 KFPQIVTTMKDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNLARV-PSSINGL----KSPKTLNLSGCCKLENV- 79 (469)
Q Consensus 7 ~lp~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~l~~l-p~~i~~L----~sL~~L~Ls~c~~l~~l- 79 (469)
.+|.....-.+|+.|++++|.|+.. -..+..+++|++|+|++|..+..- -..+..+ ++|++|++++|..++.-
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 4554322235799999999998732 334789999999999999877531 1113443 47999999999887642
Q ss_pred cccccCCCCcCEEeccCcC-CCC
Q 012173 80 PDTLGQVESLEELDISETA-VRR 101 (469)
Q Consensus 80 p~~l~~l~~L~~L~L~~~~-i~~ 101 (469)
-..+.++++|++|++++|. ++.
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCCc
Confidence 1346779999999999984 543
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.65 E-value=0.001 Score=65.87 Aligned_cols=58 Identities=10% Similarity=0.103 Sum_probs=36.0
Q ss_pred hcCCCCCCcEEeeeccCCcccC-cccCCCCCCCEEeccCCCCCcccCc-cCCCCCCCCEEEee
Q 012173 11 IVTTMKDLSELNLDGTSITEVP-SSIELLPGLELLNLNDCKNLARVPS-SINGLKSPKTLNLS 71 (469)
Q Consensus 11 ~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~-~i~~L~sL~~L~Ls 71 (469)
.+..+++|+.+.+..+ +..++ ..+.++.+|+.+++..+ +..++. .+.++..|+.+.+.
T Consensus 157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCC
T ss_pred hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecC
Confidence 4667889999988754 34443 45677888888887653 333332 24455555555544
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.60 E-value=2.8e-05 Score=72.65 Aligned_cols=95 Identities=22% Similarity=0.218 Sum_probs=59.7
Q ss_pred EeeeccCCcccCccc----CCCCCCCEEeccCCCCCc--ccCccCCCCCCCCEEEeeCCCCCccccccccCCC--CcCEE
Q 012173 21 LNLDGTSITEVPSSI----ELLPGLELLNLNDCKNLA--RVPSSINGLKSPKTLNLSGCCKLENVPDTLGQVE--SLEEL 92 (469)
Q Consensus 21 L~L~~~~l~~lp~~i----~~l~~L~~L~L~~c~~l~--~lp~~i~~L~sL~~L~Ls~c~~l~~lp~~l~~l~--~L~~L 92 (469)
++++.|....++..+ .++++|+.|+|++|..-. .+|..+..+++|+.|+|++|. +..+ ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceE
Confidence 455555444333222 567888888888876433 344555678888888888754 4443 2234344 88888
Q ss_pred eccCcCCCC-CC-------ccccCCcCCceeec
Q 012173 93 DISETAVRR-PP-------SSIFLMKNLRTLSL 117 (469)
Q Consensus 93 ~L~~~~i~~-lp-------~~l~~l~~L~~L~l 117 (469)
+|++|.+.. +| ..+..+++|+.|+-
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 888888763 33 23556788888764
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.24 E-value=0.00018 Score=67.12 Aligned_cols=68 Identities=21% Similarity=0.234 Sum_probs=52.8
Q ss_pred CCCCCCCEEEccCCCCCCC-CCCCCCCCCCCCcEEEcCCCCCcccCccccCCC--CcCEEeccCCcccCcCC
Q 012173 150 SGLRSLTKLDLSDCGLGEG-AIPSDIGNLHSLNELYLSKNNFVTLPASINSLL--NLKELEMEDCKRLQSLP 218 (469)
Q Consensus 150 ~~l~~L~~L~Ls~~~l~~~-~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~--~L~~L~L~~c~~L~~lp 218 (469)
..+++|+.|+|++|.+..- .+|..+..+++|+.|+|++|.+..+. .+..+. +|+.|+|++|+--..+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 3578999999999998631 34566678999999999999999773 344444 99999999998655444
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.24 E-value=0.011 Score=58.28 Aligned_cols=59 Identities=10% Similarity=0.169 Sum_probs=30.5
Q ss_pred CCCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCc-cccCCCCcCEEecc
Q 012173 148 SLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEME 209 (469)
Q Consensus 148 ~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~ 209 (469)
.+.++++|+.+.+... +. ..-...+..+.+|+.+.|..+ ++.+.. .+.+|.+|+.+.|.
T Consensus 283 aF~~c~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 283 AFMNCPALQDIEFSSR-IT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp TTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred ccccccccccccCCCc-cc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence 4455666666666432 21 111234555666666666543 444433 34556666666654
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.62 E-value=0.11 Score=50.71 Aligned_cols=83 Identities=13% Similarity=0.162 Sum_probs=50.8
Q ss_pred CCCCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCc-cccCCCCcCEEeccCCcccCcCCCCCCCcc
Q 012173 147 PSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCKRLQSLPQLPPNII 225 (469)
Q Consensus 147 ~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~lp~~L~ 225 (469)
..+..+.+|+.+.+... +. ..-...+..+++|+.+.+.++.++.++. .+.++.+|+.+.|.. .++.|+.-
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~----- 327 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVY----- 327 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTT-----
T ss_pred cccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHH-----
Confidence 45566778888887654 21 1122356778888888888888877765 456777788777642 12322221
Q ss_pred EEEecCCCCCccccc
Q 012173 226 FVKVNGCSSLVTLLG 240 (469)
Q Consensus 226 ~L~i~~C~~L~~l~~ 240 (469)
-..+|.+|+++..
T Consensus 328 --aF~~C~~L~~i~i 340 (379)
T 4h09_A 328 --AFKNCKALSTISY 340 (379)
T ss_dssp --TTTTCTTCCCCCC
T ss_pred --HhhCCCCCCEEEE
Confidence 1356777776654
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.29 E-value=0.058 Score=52.61 Aligned_cols=179 Identities=12% Similarity=0.138 Sum_probs=104.6
Q ss_pred cCcccch-hcCCCCCCcEEeeeccCCcc-------------cCcccCCCCCCCEEeccCCCCCcccCccCCCCCCCCEEE
Q 012173 4 QLKKFPQ-IVTTMKDLSELNLDGTSITE-------------VPSSIELLPGLELLNLNDCKNLARVPSSINGLKSPKTLN 69 (469)
Q Consensus 4 ~L~~lp~-~~~~l~~L~~L~L~~~~l~~-------------lp~~i~~l~~L~~L~L~~c~~l~~lp~~i~~L~sL~~L~ 69 (469)
.++.+.. .+..+.+++.+.+....... ....+.....+..+.+.... .......+....+|+.+.
T Consensus 145 ~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~ 223 (379)
T 4h09_A 145 SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKIT 223 (379)
T ss_dssp TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEE
T ss_pred eeeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccce-eEEeecccccccccceee
Confidence 4455544 35567888887776543221 12234445556666554422 112233455677888888
Q ss_pred eeCCCCCcccc-ccccCCCCcCEEeccCcCCCCCC-ccccCCcCCceeeccCCCCCCCccCcccccccCCccccccccCC
Q 012173 70 LSGCCKLENVP-DTLGQVESLEELDISETAVRRPP-SSIFLMKNLRTLSLFGCNGPPSWHLHLPFNLMGKSSCLVALMLP 147 (469)
Q Consensus 70 Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (469)
+.. .+..++ ..+..+.+|+.+.+..+ ++.+. ..+..+.+|+.+.+...- ......
T Consensus 224 ~~~--~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i--------------------~~i~~~ 280 (379)
T 4h09_A 224 ITS--GVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKV--------------------KTVPYL 280 (379)
T ss_dssp CCT--TCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCC--------------------SEECTT
T ss_pred ecc--ceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccccc--------------------eecccc
Confidence 864 244443 33566788888888664 44332 344567788888774321 111134
Q ss_pred CCCCCCCCCEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCc-cccCCCCcCEEec
Q 012173 148 SLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEM 208 (469)
Q Consensus 148 ~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L 208 (469)
.+.++++|+.+.+.++.+.. .-...+..+.+|+.+.|..+ ++.+.. .+.+|.+|+.+.+
T Consensus 281 aF~~c~~L~~i~l~~~~i~~-I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIET-LEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred ccccccccccccccccccce-ehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 57788999999998876631 22456788899999998643 555554 3455555555544
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.02 E-value=0.006 Score=53.88 Aligned_cols=14 Identities=14% Similarity=0.043 Sum_probs=7.2
Q ss_pred ccCCCCcCEEeccC
Q 012173 197 INSLLNLKELEMED 210 (469)
Q Consensus 197 i~~l~~L~~L~L~~ 210 (469)
+..-+.|+.|+++.
T Consensus 153 L~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 153 IEENESLLRVGISF 166 (197)
T ss_dssp HHHCSSCCEEECCC
T ss_pred HHhCCCcCeEeccC
Confidence 33345566666554
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.78 E-value=0.024 Score=46.44 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=35.4
Q ss_pred EEeeeccCCc--ccCcccCCCCCCCEEeccCCCCCcccCcc-CCCCCCCCEEEeeCCC
Q 012173 20 ELNLDGTSIT--EVPSSIELLPGLELLNLNDCKNLARVPSS-INGLKSPKTLNLSGCC 74 (469)
Q Consensus 20 ~L~L~~~~l~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~-i~~L~sL~~L~Ls~c~ 74 (469)
.++.+++.++ .+|..+ -++|++|+|++|. +..+|.. +..+++|++|+|.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 5667777777 777543 2467888888766 6666554 4567788888888764
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.76 E-value=0.065 Score=43.82 Aligned_cols=55 Identities=25% Similarity=0.390 Sum_probs=40.8
Q ss_pred CEEEccCCCCCCCCCCCCCCCCCCCcEEEcCCCCCcccCcc-ccCCCCcCEEeccCCc
Q 012173 156 TKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPAS-INSLLNLKELEMEDCK 212 (469)
Q Consensus 156 ~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 212 (469)
..++.++.+++...+|..+ .++|+.|+|++|+++.+|.. +..+++|+.|+|.+|+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 3677777777422477543 24689999999999988874 4678889999888874
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.05 E-value=0.017 Score=51.02 Aligned_cols=108 Identities=13% Similarity=0.060 Sum_probs=66.2
Q ss_pred CCCCCCcEEeeecc-CCc-----ccCcccCCCCCCCEEeccCCCCCcc----cCccCCCCCCCCEEEeeCCCCCc----c
Q 012173 13 TTMKDLSELNLDGT-SIT-----EVPSSIELLPGLELLNLNDCKNLAR----VPSSINGLKSPKTLNLSGCCKLE----N 78 (469)
Q Consensus 13 ~~l~~L~~L~L~~~-~l~-----~lp~~i~~l~~L~~L~L~~c~~l~~----lp~~i~~L~sL~~L~Ls~c~~l~----~ 78 (469)
.+-+.|+.|+|+++ .|. .+-..+..-+.|+.|+|++|..-.. +...+..-++|++|+|++|..-. .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34467888888875 665 2445566777888888888774321 22223344678888888765432 2
Q ss_pred ccccccCCCCcCEEeccCcCC---C-----CCCccccCCcCCceeeccCC
Q 012173 79 VPDTLGQVESLEELDISETAV---R-----RPPSSIFLMKNLRTLSLFGC 120 (469)
Q Consensus 79 lp~~l~~l~~L~~L~L~~~~i---~-----~lp~~l~~l~~L~~L~l~~~ 120 (469)
+-+.+..-+.|++|+|+++.. . .+...+..-+.|+.|+++.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 344555666788888876533 2 12234445567778777644
Done!