Query 012177
Match_columns 469
No_of_seqs 354 out of 2181
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 23:52:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012177.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012177hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2381 Phosphatidylinositol 4 100.0 1.7E-51 3.6E-56 406.9 6.5 196 260-469 2-203 (286)
2 TIGR03843 conserved hypothetic 100.0 3.2E-42 6.8E-47 330.4 9.9 153 268-469 3-184 (253)
3 cd01802 AN1_N ubiquitin-like d 99.7 8E-17 1.7E-21 138.5 9.8 92 91-184 9-100 (103)
4 cd01807 GDX_N ubiquitin-like d 99.6 7.3E-16 1.6E-20 124.3 8.2 73 110-184 1-73 (74)
5 cd01802 AN1_N ubiquitin-like d 99.6 1.3E-15 2.9E-20 130.9 9.3 78 31-109 25-103 (103)
6 cd01793 Fubi Fubi ubiquitin-li 99.6 1.4E-15 3.1E-20 122.7 7.9 74 34-109 1-74 (74)
7 cd01807 GDX_N ubiquitin-like d 99.6 1.5E-15 3.1E-20 122.6 7.8 72 34-106 1-73 (74)
8 PTZ00044 ubiquitin; Provisiona 99.6 2.7E-15 5.9E-20 121.1 8.1 75 34-109 1-76 (76)
9 cd01793 Fubi Fubi ubiquitin-li 99.6 9.4E-15 2E-19 117.9 8.2 71 110-184 1-71 (74)
10 cd01797 NIRF_N amino-terminal 99.6 1.1E-14 2.4E-19 119.0 8.0 74 110-185 1-76 (78)
11 cd01797 NIRF_N amino-terminal 99.6 9.6E-15 2.1E-19 119.4 7.4 73 34-107 1-76 (78)
12 PTZ00044 ubiquitin; Provisiona 99.5 1.9E-14 4E-19 116.3 8.3 73 110-184 1-73 (76)
13 cd01798 parkin_N amino-termina 99.5 1.6E-14 3.6E-19 115.1 7.6 70 112-183 1-70 (70)
14 cd01810 ISG15_repeat2 ISG15 ub 99.5 1.4E-14 2.9E-19 117.0 7.2 73 36-109 1-74 (74)
15 cd01806 Nedd8 Nebb8-like ubiq 99.5 2.6E-14 5.6E-19 114.9 8.2 75 34-109 1-76 (76)
16 cd01803 Ubiquitin Ubiquitin. U 99.5 2.3E-14 5E-19 115.2 7.9 75 34-109 1-76 (76)
17 cd01810 ISG15_repeat2 ISG15 ub 99.5 3E-14 6.4E-19 115.0 8.0 71 112-184 1-71 (74)
18 cd01805 RAD23_N Ubiquitin-like 99.5 5.3E-14 1.2E-18 113.8 8.9 76 110-185 1-76 (77)
19 KOG0003 Ubiquitin/60s ribosoma 99.5 2.2E-15 4.8E-20 127.3 0.7 75 34-109 1-76 (128)
20 cd01804 midnolin_N Ubiquitin-l 99.5 6.4E-14 1.4E-18 114.4 8.2 75 33-109 1-76 (78)
21 cd01794 DC_UbP_C dendritic cel 99.5 5.3E-14 1.1E-18 112.7 7.5 68 113-182 2-69 (70)
22 cd01806 Nedd8 Nebb8-like ubiq 99.5 9.5E-14 2.1E-18 111.6 8.7 73 110-184 1-73 (76)
23 cd01791 Ubl5 UBL5 ubiquitin-li 99.5 6.2E-14 1.3E-18 113.3 7.3 70 34-104 2-72 (73)
24 cd01798 parkin_N amino-termina 99.5 5.6E-14 1.2E-18 112.0 6.9 69 36-105 1-70 (70)
25 cd01803 Ubiquitin Ubiquitin. U 99.5 1.2E-13 2.7E-18 110.9 8.2 73 110-184 1-73 (76)
26 cd01809 Scythe_N Ubiquitin-lik 99.5 1.3E-13 2.8E-18 109.6 8.2 72 110-183 1-72 (72)
27 cd01791 Ubl5 UBL5 ubiquitin-li 99.5 9.3E-14 2E-18 112.2 7.1 70 110-181 2-71 (73)
28 KOG0004 Ubiquitin/40S ribosoma 99.5 2E-14 4.3E-19 129.6 3.4 76 34-110 1-77 (156)
29 cd01794 DC_UbP_C dendritic cel 99.5 9.2E-14 2E-18 111.3 6.6 67 37-104 2-69 (70)
30 cd01805 RAD23_N Ubiquitin-like 99.5 1.6E-13 3.5E-18 110.9 8.1 72 34-106 1-75 (77)
31 KOG0005 Ubiquitin-like protein 99.5 4.7E-14 1E-18 107.3 3.9 69 34-103 1-70 (70)
32 cd01809 Scythe_N Ubiquitin-lik 99.5 2.1E-13 4.6E-18 108.4 7.8 71 34-105 1-72 (72)
33 cd01804 midnolin_N Ubiquitin-l 99.4 3.5E-13 7.5E-18 110.1 8.1 73 109-184 1-73 (78)
34 cd01792 ISG15_repeat1 ISG15 ub 99.4 2.1E-13 4.7E-18 111.7 6.9 74 110-185 3-78 (80)
35 cd01808 hPLIC_N Ubiquitin-like 99.4 3.7E-13 8E-18 107.7 7.8 71 110-183 1-71 (71)
36 PF00240 ubiquitin: Ubiquitin 99.4 7.5E-13 1.6E-17 104.7 8.3 68 115-184 1-68 (69)
37 cd01792 ISG15_repeat1 ISG15 ub 99.4 5.5E-13 1.2E-17 109.3 7.3 72 33-105 2-76 (80)
38 cd01800 SF3a120_C Ubiquitin-li 99.4 5.8E-13 1.3E-17 108.1 7.2 70 39-109 4-73 (76)
39 cd01808 hPLIC_N Ubiquitin-like 99.4 6.3E-13 1.4E-17 106.3 7.2 70 34-105 1-71 (71)
40 KOG0005 Ubiquitin-like protein 99.4 2.4E-13 5.3E-18 103.4 4.1 70 110-181 1-70 (70)
41 cd01796 DDI1_N DNA damage indu 99.4 6.8E-13 1.5E-17 106.4 7.0 67 36-103 1-70 (71)
42 KOG0003 Ubiquitin/60s ribosoma 99.4 4.2E-14 9.1E-19 119.6 -0.3 73 110-184 1-73 (128)
43 cd01796 DDI1_N DNA damage indu 99.4 1E-12 2.2E-17 105.4 7.3 68 112-181 1-70 (71)
44 PF00240 ubiquitin: Ubiquitin 99.4 1.6E-12 3.4E-17 102.9 8.1 67 39-106 2-68 (69)
45 KOG0004 Ubiquitin/40S ribosoma 99.4 2.9E-13 6.3E-18 122.1 4.0 73 110-184 1-73 (156)
46 cd01812 BAG1_N Ubiquitin-like 99.3 4.4E-12 9.6E-17 100.7 7.6 70 34-104 1-70 (71)
47 cd01763 Sumo Small ubiquitin-r 99.3 8.9E-12 1.9E-16 103.9 9.4 81 28-109 6-87 (87)
48 cd01790 Herp_N Homocysteine-re 99.3 4.5E-12 9.8E-17 103.7 7.0 72 110-182 2-78 (79)
49 cd01813 UBP_N UBP ubiquitin pr 99.3 8.8E-12 1.9E-16 100.9 7.8 70 34-104 1-73 (74)
50 cd01812 BAG1_N Ubiquitin-like 99.3 9.5E-12 2.1E-16 98.8 7.4 70 110-182 1-70 (71)
51 cd01800 SF3a120_C Ubiquitin-li 99.3 1.3E-11 2.7E-16 100.3 7.7 66 117-184 5-70 (76)
52 cd01790 Herp_N Homocysteine-re 99.3 1.2E-11 2.6E-16 101.3 6.6 71 33-104 1-78 (79)
53 cd01799 Hoil1_N Ubiquitin-like 99.2 1.9E-11 4.1E-16 99.3 7.2 69 35-104 2-74 (75)
54 cd01763 Sumo Small ubiquitin-r 99.2 5E-11 1.1E-15 99.3 9.2 76 107-184 9-84 (87)
55 TIGR00601 rad23 UV excision re 99.2 5.9E-11 1.3E-15 123.4 9.0 76 110-187 1-79 (378)
56 cd01815 BMSC_UbP_N Ubiquitin-l 99.1 4.5E-11 9.7E-16 96.7 4.8 55 49-104 16-74 (75)
57 cd01813 UBP_N UBP ubiquitin pr 99.1 1.6E-10 3.5E-15 93.6 7.5 69 110-181 1-72 (74)
58 smart00213 UBQ Ubiquitin homol 99.1 1.4E-10 3.1E-15 89.4 6.8 63 34-98 1-64 (64)
59 smart00213 UBQ Ubiquitin homol 99.1 2.1E-10 4.6E-15 88.4 6.8 64 110-176 1-64 (64)
60 TIGR00601 rad23 UV excision re 99.1 1.9E-10 4.2E-15 119.6 7.6 72 34-106 1-76 (378)
61 cd01815 BMSC_UbP_N Ubiquitin-l 99.1 1.6E-10 3.4E-15 93.5 5.3 54 128-182 19-74 (75)
62 cd01814 NTGP5 Ubiquitin-like N 99.0 3.9E-10 8.4E-15 97.4 5.6 77 110-186 5-93 (113)
63 cd01799 Hoil1_N Ubiquitin-like 99.0 7.9E-10 1.7E-14 89.8 6.5 64 116-182 9-74 (75)
64 cd01795 USP48_C USP ubiquitin- 99.0 9.5E-10 2.1E-14 92.7 6.1 63 44-106 16-78 (107)
65 PF00454 PI3_PI4_kinase: Phosp 98.9 3.2E-12 6.8E-17 124.2 -11.3 138 326-466 28-180 (235)
66 cd01769 UBL Ubiquitin-like dom 98.9 6.5E-09 1.4E-13 81.1 7.2 67 114-182 2-68 (69)
67 cd01814 NTGP5 Ubiquitin-like N 98.8 3.5E-09 7.6E-14 91.5 4.9 75 32-107 3-92 (113)
68 PF11976 Rad60-SLD: Ubiquitin- 98.8 1.5E-08 3.3E-13 80.8 7.9 71 110-182 1-72 (72)
69 KOG0010 Ubiquitin-like protein 98.8 6.9E-09 1.5E-13 109.0 6.9 77 108-187 14-90 (493)
70 KOG0011 Nucleotide excision re 98.8 9.9E-09 2.1E-13 103.1 7.7 77 110-186 1-77 (340)
71 cd01789 Alp11_N Ubiquitin-like 98.8 3.1E-08 6.7E-13 82.1 9.0 70 34-103 2-79 (84)
72 cd01769 UBL Ubiquitin-like dom 98.8 1.6E-08 3.5E-13 78.9 6.7 64 40-104 5-68 (69)
73 KOG0011 Nucleotide excision re 98.8 8.9E-09 1.9E-13 103.4 6.2 73 34-107 1-76 (340)
74 KOG0010 Ubiquitin-like protein 98.8 9.3E-09 2E-13 108.1 6.4 75 32-107 14-88 (493)
75 PF11976 Rad60-SLD: Ubiquitin- 98.7 3.1E-08 6.7E-13 79.0 7.4 70 34-104 1-72 (72)
76 cd01795 USP48_C USP ubiquitin- 98.7 2.4E-08 5.2E-13 84.3 6.5 61 121-183 16-77 (107)
77 KOG0001 Ubiquitin and ubiquiti 98.7 5.4E-08 1.2E-12 75.6 7.9 71 36-107 2-73 (75)
78 KOG0001 Ubiquitin and ubiquiti 98.7 1.6E-07 3.4E-12 72.9 9.0 71 112-184 2-72 (75)
79 PF14560 Ubiquitin_2: Ubiquiti 98.4 1E-06 2.2E-11 73.2 8.4 70 34-103 2-81 (87)
80 cd01789 Alp11_N Ubiquitin-like 98.4 1.5E-06 3.3E-11 72.0 8.5 64 119-184 12-82 (84)
81 cd01788 ElonginB Ubiquitin-lik 98.4 1.2E-06 2.5E-11 75.9 7.0 75 34-109 1-84 (119)
82 PF13881 Rad60-SLD_2: Ubiquiti 98.3 5.4E-06 1.2E-10 72.4 10.0 76 111-186 4-91 (111)
83 cd01788 ElonginB Ubiquitin-lik 98.2 5.1E-06 1.1E-10 71.9 8.1 64 120-185 12-82 (119)
84 KOG3829 Uncharacterized conser 98.2 2.8E-06 6.1E-11 87.6 7.2 168 257-458 151-389 (486)
85 KOG4248 Ubiquitin-like protein 98.2 2.2E-06 4.7E-11 96.7 6.6 74 111-187 4-77 (1143)
86 PLN02560 enoyl-CoA reductase 98.2 3.2E-06 6.9E-11 86.2 7.1 68 34-102 1-80 (308)
87 KOG4248 Ubiquitin-like protein 98.1 2.3E-06 5.1E-11 96.4 5.7 70 36-107 5-75 (1143)
88 PLN02560 enoyl-CoA reductase 98.1 4.5E-06 9.7E-11 85.1 7.2 70 110-180 1-80 (308)
89 cd01811 OASL_repeat1 2'-5' oli 98.1 1.2E-05 2.6E-10 64.5 6.8 71 34-105 1-76 (80)
90 PF14560 Ubiquitin_2: Ubiquiti 98.0 1.7E-05 3.6E-10 65.9 7.0 72 111-184 3-84 (87)
91 PF13881 Rad60-SLD_2: Ubiquiti 98.0 3.9E-05 8.6E-10 67.0 9.0 74 33-107 2-90 (111)
92 cd00196 UBQ Ubiquitin-like pro 97.8 7.6E-05 1.6E-09 54.5 7.4 64 117-182 5-68 (69)
93 PF11543 UN_NPL4: Nuclear pore 97.8 5.1E-05 1.1E-09 62.5 5.8 73 31-103 2-78 (80)
94 cd00196 UBQ Ubiquitin-like pro 97.7 0.00012 2.7E-09 53.3 6.7 63 41-104 6-68 (69)
95 cd01801 Tsc13_N Ubiquitin-like 97.7 0.0001 2.2E-09 59.8 6.3 53 127-180 20-74 (77)
96 cd01801 Tsc13_N Ubiquitin-like 97.7 0.0001 2.2E-09 59.9 5.8 55 47-102 16-74 (77)
97 PF11543 UN_NPL4: Nuclear pore 97.5 0.00012 2.6E-09 60.3 4.3 70 108-180 3-77 (80)
98 cd01811 OASL_repeat1 2'-5' oli 97.4 0.00072 1.6E-08 54.5 7.0 71 110-183 1-76 (80)
99 KOG0006 E3 ubiquitin-protein l 97.3 0.00036 7.9E-09 70.1 5.7 66 119-186 13-78 (446)
100 KOG0006 E3 ubiquitin-protein l 97.2 0.00069 1.5E-08 68.2 6.1 69 34-103 1-73 (446)
101 KOG4495 RNA polymerase II tran 96.7 0.0025 5.4E-08 53.7 4.9 61 35-95 4-65 (110)
102 KOG3493 Ubiquitin-like protein 96.7 0.00074 1.6E-08 52.9 1.1 68 35-103 3-71 (73)
103 KOG3493 Ubiquitin-like protein 96.2 0.0018 4E-08 50.7 1.1 68 111-180 3-70 (73)
104 PF07804 HipA_C: HipA-like C-t 96.0 0.0015 3.3E-08 53.2 -0.3 38 412-450 40-77 (79)
105 KOG4495 RNA polymerase II tran 95.9 0.012 2.6E-07 49.7 4.7 52 119-172 11-64 (110)
106 KOG1872 Ubiquitin-specific pro 95.9 0.014 2.9E-07 62.1 6.1 71 35-106 5-76 (473)
107 PF06702 DUF1193: Protein of u 95.3 0.0095 2.1E-07 57.9 2.1 42 414-457 91-132 (221)
108 KOG1769 Ubiquitin-like protein 95.3 0.14 3.1E-06 43.7 8.9 75 109-185 20-94 (99)
109 PF11470 TUG-UBL1: GLUT4 regul 95.1 0.071 1.5E-06 42.3 6.1 63 39-102 3-65 (65)
110 PF13019 Telomere_Sde2: Telome 94.8 0.096 2.1E-06 48.7 7.2 76 34-109 1-88 (162)
111 KOG1872 Ubiquitin-specific pro 94.8 0.058 1.3E-06 57.4 6.5 72 112-186 6-78 (473)
112 KOG1769 Ubiquitin-like protein 94.6 0.22 4.7E-06 42.6 8.2 77 31-108 18-95 (99)
113 PF10302 DUF2407: DUF2407 ubiq 94.6 0.073 1.6E-06 45.5 5.3 50 121-170 13-64 (97)
114 PF08817 YukD: WXG100 protein 94.3 0.11 2.4E-06 42.3 5.7 72 110-181 3-79 (79)
115 PF08817 YukD: WXG100 protein 94.1 0.13 2.8E-06 41.9 5.7 68 34-102 3-78 (79)
116 PF11470 TUG-UBL1: GLUT4 regul 94.0 0.18 3.8E-06 40.0 6.0 62 117-180 4-65 (65)
117 PF00789 UBX: UBX domain; Int 93.7 0.38 8.2E-06 39.0 7.7 72 31-102 4-80 (82)
118 cd00893 PI4Kc_III Phosphoinosi 93.5 0.04 8.6E-07 56.0 1.9 41 414-458 130-170 (289)
119 PF00789 UBX: UBX domain; Int 93.4 0.41 9E-06 38.8 7.6 71 108-180 5-80 (82)
120 KOG0013 Uncharacterized conser 93.3 0.1 2.2E-06 50.3 4.3 63 38-101 152-214 (231)
121 PF10302 DUF2407: DUF2407 ubiq 93.3 0.18 3.9E-06 43.1 5.4 46 45-91 14-63 (97)
122 KOG3206 Alpha-tubulin folding 92.7 0.24 5.2E-06 47.6 5.8 70 34-103 2-79 (234)
123 cd05177 PI3Kc_C2_gamma Phospho 92.5 0.067 1.5E-06 55.8 2.0 40 414-457 194-233 (354)
124 KOG0013 Uncharacterized conser 92.4 0.26 5.7E-06 47.4 5.7 61 118-180 155-215 (231)
125 cd05168 PI4Kc_III_beta Phospho 92.3 0.074 1.6E-06 54.1 2.0 41 414-458 132-172 (293)
126 cd05165 PI3Kc_I Phosphoinositi 92.3 0.07 1.5E-06 55.9 1.8 40 414-457 203-242 (366)
127 cd05174 PI3Kc_IA_delta Phospho 92.2 0.074 1.6E-06 55.6 1.9 40 414-457 199-238 (361)
128 cd05175 PI3Kc_IA_alpha Phospho 92.0 0.08 1.7E-06 55.4 1.8 41 414-458 202-242 (366)
129 cd05167 PI4Kc_III_alpha Phosph 91.9 0.087 1.9E-06 54.1 1.9 40 415-458 152-191 (311)
130 cd05166 PI3Kc_II Phosphoinosit 91.7 0.096 2.1E-06 54.7 2.1 40 414-457 193-232 (353)
131 cd05173 PI3Kc_IA_beta Phosphoi 91.6 0.092 2E-06 55.0 1.8 40 414-457 199-238 (362)
132 cd00891 PI3Kc Phosphoinositide 91.4 0.095 2.1E-06 54.7 1.7 40 414-457 194-233 (352)
133 PF13019 Telomere_Sde2: Telome 91.3 0.8 1.7E-05 42.7 7.3 72 110-183 1-84 (162)
134 cd00896 PI3Kc_III Phosphoinosi 91.3 0.11 2.3E-06 54.3 1.8 42 414-459 193-234 (350)
135 cd00895 PI3Kc_C2_beta Phosphoi 91.2 0.12 2.5E-06 54.0 2.0 40 415-458 195-234 (354)
136 smart00166 UBX Domain present 91.1 0.91 2E-05 36.9 6.9 70 109-180 4-78 (80)
137 PF14533 USP7_C2: Ubiquitin-sp 91.0 2.2 4.8E-05 41.3 10.6 113 31-146 18-159 (213)
138 cd01770 p47_UBX p47-like ubiqu 91.0 0.95 2.1E-05 37.1 6.9 69 110-179 5-76 (79)
139 cd01770 p47_UBX p47-like ubiqu 89.7 1.5 3.3E-05 35.9 7.0 68 33-100 4-75 (79)
140 KOG1639 Steroid reductase requ 89.7 0.49 1.1E-05 46.8 4.8 67 34-101 1-75 (297)
141 COG5417 Uncharacterized small 89.5 2 4.3E-05 35.0 7.2 69 33-102 4-80 (81)
142 KOG1639 Steroid reductase requ 89.2 0.63 1.4E-05 46.1 5.1 69 110-180 1-76 (297)
143 smart00166 UBX Domain present 88.7 2.3 5E-05 34.5 7.5 71 32-102 3-78 (80)
144 cd00894 PI3Kc_IB_gamma Phospho 88.3 0.23 5E-06 52.1 1.5 39 415-457 204-242 (365)
145 cd01772 SAKS1_UBX SAKS1-like U 88.3 2.5 5.5E-05 34.4 7.4 68 110-180 5-77 (79)
146 cd05176 PI3Kc_C2_alpha Phospho 87.8 0.25 5.4E-06 51.6 1.4 40 414-457 193-232 (353)
147 PF09379 FERM_N: FERM N-termin 87.6 3.9 8.4E-05 32.6 8.1 66 114-180 1-72 (80)
148 PF15044 CLU_N: Mitochondrial 86.5 1.2 2.6E-05 36.3 4.4 57 126-183 1-58 (76)
149 PF14836 Ubiquitin_3: Ubiquiti 86.1 3.6 7.8E-05 34.6 7.1 66 43-109 14-84 (88)
150 cd01767 UBX UBX (ubiquitin reg 86.0 3.4 7.4E-05 33.2 6.9 65 111-178 4-73 (77)
151 COG5417 Uncharacterized small 85.9 4.1 8.8E-05 33.2 7.0 66 115-180 12-80 (81)
152 PF11620 GABP-alpha: GA-bindin 85.2 3.9 8.5E-05 34.1 6.8 61 121-183 4-64 (88)
153 cd01774 Faf1_like2_UBX Faf1 ik 85.1 5.1 0.00011 33.3 7.6 70 108-180 3-82 (85)
154 KOG4583 Membrane-associated ER 85.0 0.36 7.7E-06 49.6 0.8 72 110-181 10-85 (391)
155 KOG0903 Phosphatidylinositol 4 84.8 0.65 1.4E-05 52.2 2.7 39 417-459 689-727 (847)
156 PF12436 USP7_ICP0_bdg: ICP0-b 84.1 9.6 0.00021 37.8 10.5 124 30-156 65-224 (249)
157 cd00892 PIKKc_ATR ATR (Ataxia 84.0 0.72 1.6E-05 45.5 2.4 42 414-458 130-171 (237)
158 PF11620 GABP-alpha: GA-bindin 83.9 4 8.7E-05 34.1 6.3 60 44-104 4-63 (88)
159 COG5227 SMT3 Ubiquitin-like pr 83.7 4.1 8.9E-05 34.4 6.3 69 110-180 25-93 (103)
160 KOG0012 DNA damage inducible p 83.7 1.4 3.1E-05 45.7 4.5 76 34-109 1-80 (380)
161 cd01767 UBX UBX (ubiquitin reg 83.6 6.2 0.00013 31.7 7.4 64 34-98 3-71 (77)
162 COG5227 SMT3 Ubiquitin-like pr 83.3 3.1 6.7E-05 35.1 5.5 72 31-103 22-94 (103)
163 PTZ00303 phosphatidylinositol 83.1 0.51 1.1E-05 53.1 1.1 42 414-459 1136-1177(1374)
164 cd00142 PI3Kc_like Phosphoinos 82.9 0.82 1.8E-05 44.4 2.3 43 414-459 119-161 (219)
165 PF15044 CLU_N: Mitochondrial 82.7 2 4.4E-05 34.9 4.2 57 49-106 1-59 (76)
166 cd01774 Faf1_like2_UBX Faf1 ik 81.9 7.3 0.00016 32.3 7.3 71 31-102 2-82 (85)
167 cd01772 SAKS1_UBX SAKS1-like U 81.5 7.1 0.00015 31.7 7.0 69 33-102 4-77 (79)
168 cd06406 PB1_P67 A PB1 domain i 81.1 5.9 0.00013 32.8 6.3 45 34-79 3-47 (80)
169 KOG0906 Phosphatidylinositol 3 80.3 1.5 3.3E-05 48.7 3.4 42 414-459 685-726 (843)
170 cd05169 PIKKc_TOR TOR (Target 80.0 1.1 2.4E-05 45.1 2.1 41 413-456 171-211 (280)
171 cd05124 AFK Actin-Fragmin Kina 79.9 1.7 3.8E-05 42.8 3.4 50 391-440 94-159 (238)
172 smart00146 PI3Kc Phosphoinosit 79.3 0.78 1.7E-05 43.9 0.8 41 414-458 92-132 (202)
173 cd06407 PB1_NLP A PB1 domain i 79.3 8.1 0.00017 31.9 6.7 45 34-78 1-46 (82)
174 cd05164 PIKKc Phosphoinositide 78.3 1.4 3.1E-05 42.9 2.3 42 414-458 122-163 (222)
175 PRK09775 putative DNA-binding 77.7 0.93 2E-05 48.8 0.8 39 412-450 327-365 (442)
176 cd05172 PIKKc_DNA-PK DNA-depen 77.7 1.9 4E-05 42.6 2.9 42 414-458 127-168 (235)
177 cd05170 PIKKc_SMG1 Suppressor 77.2 1.6 3.6E-05 44.6 2.4 42 413-457 199-240 (307)
178 cd01771 Faf1_UBX Faf1 UBX doma 76.5 15 0.00032 30.2 7.4 70 33-103 4-78 (80)
179 KOG0904 Phosphatidylinositol 3 76.0 2.4 5.1E-05 48.7 3.4 35 31-65 35-70 (1076)
180 KOG1235 Predicted unusual prot 75.6 1.8 3.8E-05 47.8 2.3 39 420-458 317-355 (538)
181 smart00666 PB1 PB1 domain. Pho 75.4 14 0.00031 29.5 7.1 46 34-79 2-47 (81)
182 cd01773 Faf1_like1_UBX Faf1 ik 74.6 16 0.00035 30.3 7.2 69 34-103 6-79 (82)
183 cd01773 Faf1_like1_UBX Faf1 ik 74.6 19 0.00041 29.9 7.6 70 110-182 6-80 (82)
184 KOG0902 Phosphatidylinositol 4 74.1 1.2 2.6E-05 53.4 0.5 41 415-459 1644-1684(1803)
185 cd05171 PIKKc_ATM Ataxia telan 73.7 2 4.4E-05 43.3 2.0 42 413-457 171-212 (279)
186 PF09379 FERM_N: FERM N-termin 70.7 35 0.00075 27.0 8.3 56 39-95 3-65 (80)
187 PF08337 Plexin_cytopl: Plexin 68.1 7.5 0.00016 42.9 5.0 80 30-109 186-293 (539)
188 PF15051 FAM198: FAM198 protei 68.0 0.95 2.1E-05 46.0 -1.8 123 320-459 67-245 (326)
189 KOG3206 Alpha-tubulin folding 66.2 16 0.00035 35.5 6.1 65 122-188 15-86 (234)
190 PRK08364 sulfur carrier protei 66.0 40 0.00086 26.6 7.6 63 36-108 5-69 (70)
191 cd06406 PB1_P67 A PB1 domain i 65.8 19 0.00041 29.8 5.7 38 121-160 12-49 (80)
192 PF00564 PB1: PB1 domain; Int 65.0 35 0.00076 27.2 7.3 46 33-78 1-47 (84)
193 cd01771 Faf1_UBX Faf1 UBX doma 65.0 35 0.00076 27.9 7.2 68 110-180 5-77 (80)
194 KOG0905 Phosphoinositide 3-kin 64.5 6 0.00013 47.0 3.4 35 418-456 1191-1225(1639)
195 PRK06437 hypothetical protein; 64.2 35 0.00077 26.8 6.9 60 38-107 5-65 (67)
196 cd00754 MoaD Ubiquitin domain 62.2 31 0.00066 27.3 6.4 60 43-108 16-79 (80)
197 smart00295 B41 Band 4.1 homolo 61.7 50 0.0011 30.6 8.7 47 109-156 3-49 (207)
198 cd06409 PB1_MUG70 The MUG70 pr 60.9 19 0.00042 30.1 5.0 45 112-156 3-48 (86)
199 cd05163 TRRAP TRansformation/t 60.7 6.6 0.00014 39.1 2.6 40 414-456 145-184 (253)
200 PRK06488 sulfur carrier protei 60.4 40 0.00086 26.0 6.5 61 38-107 3-63 (65)
201 smart00455 RBD Raf-like Ras-bi 59.9 22 0.00047 28.4 5.0 44 113-158 3-46 (70)
202 cd01760 RBD Ubiquitin-like dom 59.1 21 0.00046 28.8 4.8 45 112-158 2-46 (72)
203 cd00754 MoaD Ubiquitin domain 59.0 38 0.00082 26.7 6.4 56 121-181 17-74 (80)
204 cd01760 RBD Ubiquitin-like dom 57.9 29 0.00062 28.0 5.4 43 37-79 3-46 (72)
205 PRK06437 hypothetical protein; 56.9 63 0.0014 25.4 7.1 54 118-182 9-62 (67)
206 KOG4250 TANK binding protein k 55.7 27 0.0006 39.6 6.5 49 34-82 314-364 (732)
207 cd06407 PB1_NLP A PB1 domain i 55.3 51 0.0011 27.2 6.6 43 117-160 7-49 (82)
208 smart00666 PB1 PB1 domain. Pho 55.0 39 0.00084 26.9 5.9 40 118-159 9-48 (81)
209 KOG2086 Protein tyrosine phosp 54.8 21 0.00045 37.7 5.1 70 31-101 305-377 (380)
210 PF10790 DUF2604: Protein of U 54.8 43 0.00094 26.7 5.6 68 117-184 3-72 (76)
211 KOG4250 TANK binding protein k 54.7 35 0.00077 38.8 7.2 69 117-189 322-392 (732)
212 smart00455 RBD Raf-like Ras-bi 54.1 36 0.00079 27.1 5.4 41 39-79 6-46 (70)
213 cd06408 PB1_NoxR The PB1 domai 53.3 82 0.0018 26.4 7.5 46 33-79 2-47 (86)
214 cd05992 PB1 The PB1 domain is 51.8 48 0.001 26.2 5.9 45 35-79 2-47 (81)
215 cd06409 PB1_MUG70 The MUG70 pr 50.5 41 0.00089 28.2 5.3 39 39-77 7-48 (86)
216 COG0661 AarF Predicted unusual 50.3 12 0.00025 41.4 2.6 31 424-458 285-315 (517)
217 KOG0608 Warts/lats-like serine 50.3 13 0.00027 42.1 2.8 37 412-457 742-778 (1034)
218 PF14453 ThiS-like: ThiS-like 49.6 64 0.0014 25.0 5.9 54 110-181 1-54 (57)
219 PF12754 Blt1: Cell-cycle cont 49.4 5.6 0.00012 40.8 0.0 67 28-95 73-160 (309)
220 smart00144 PI3K_rbd PI3-kinase 49.0 96 0.0021 26.7 7.7 67 119-185 28-106 (108)
221 PF14836 Ubiquitin_3: Ubiquiti 48.9 1.3E+02 0.0028 25.4 8.0 62 120-184 14-81 (88)
222 PRK05863 sulfur carrier protei 48.2 60 0.0013 25.2 5.7 59 38-105 3-61 (65)
223 PF02505 MCR_D: Methyl-coenzym 47.8 1.5E+02 0.0033 27.4 9.0 111 44-171 5-121 (153)
224 KOG0012 DNA damage inducible p 47.7 29 0.00064 36.3 4.9 68 118-187 11-80 (380)
225 KOG4583 Membrane-associated ER 47.2 6.7 0.00014 40.6 0.2 72 32-104 8-86 (391)
226 PRK08364 sulfur carrier protei 47.0 1.2E+02 0.0026 23.9 7.3 50 121-181 15-64 (70)
227 cd06398 PB1_Joka2 The PB1 doma 46.1 77 0.0017 26.7 6.4 44 35-78 2-51 (91)
228 smart00295 B41 Band 4.1 homolo 45.9 51 0.0011 30.5 6.0 39 32-70 2-41 (207)
229 cd06411 PB1_p51 The PB1 domain 45.4 55 0.0012 27.0 5.2 35 44-78 8-42 (78)
230 cd06396 PB1_NBR1 The PB1 domai 44.9 86 0.0019 26.0 6.3 41 35-77 2-44 (81)
231 PRK06083 sulfur carrier protei 44.5 1.4E+02 0.003 24.8 7.6 66 31-104 14-79 (84)
232 PF14453 ThiS-like: ThiS-like 43.7 61 0.0013 25.1 4.9 55 34-104 1-55 (57)
233 PRK05659 sulfur carrier protei 43.2 1.3E+02 0.0027 23.1 6.9 60 38-105 3-62 (66)
234 TIGR01682 moaD molybdopterin c 43.1 1.1E+02 0.0023 24.5 6.7 60 43-108 16-79 (80)
235 KOG0007 Splicing factor 3a, su 42.7 12 0.00026 38.9 1.3 58 31-89 279-339 (341)
236 TIGR01687 moaD_arch MoaD famil 42.4 1.4E+02 0.003 24.2 7.3 62 43-109 16-88 (88)
237 PLN02799 Molybdopterin synthas 42.1 1E+02 0.0022 24.8 6.4 60 43-108 19-81 (82)
238 cd00565 ThiS ThiaminS ubiquiti 42.0 75 0.0016 24.4 5.4 62 39-108 3-64 (65)
239 KOG3316 Transport protein part 41.7 10 0.00022 35.0 0.5 59 280-344 94-152 (163)
240 KOG2086 Protein tyrosine phosp 40.6 35 0.00075 36.1 4.2 69 110-179 306-377 (380)
241 PRK07440 hypothetical protein; 40.2 1.8E+02 0.0038 23.1 7.3 61 36-104 5-65 (70)
242 PF14533 USP7_C2: Ubiquitin-sp 40.0 27 0.00057 33.9 3.1 41 32-72 114-162 (213)
243 PF08337 Plexin_cytopl: Plexin 39.9 54 0.0012 36.4 5.7 67 120-186 202-292 (539)
244 PF10790 DUF2604: Protein of U 39.7 97 0.0021 24.7 5.5 65 40-105 3-71 (76)
245 smart00144 PI3K_rbd PI3-kinase 37.6 2.1E+02 0.0045 24.6 8.0 74 31-105 15-104 (108)
246 PF09192 Act-Frag_cataly: Acti 37.1 8.6 0.00019 38.9 -0.8 139 274-455 32-208 (275)
247 TIGR01683 thiS thiamine biosyn 35.8 1.2E+02 0.0026 23.2 5.7 61 39-107 2-62 (64)
248 PF02597 ThiS: ThiS family; I 35.6 41 0.00089 26.3 3.1 61 118-181 11-71 (77)
249 TIGR01682 moaD molybdopterin c 34.7 2E+02 0.0043 22.9 7.0 56 121-181 17-74 (80)
250 COG5032 TEL1 Phosphatidylinosi 34.6 15 0.00033 47.0 0.6 44 413-459 1932-1975(2105)
251 PF02196 RBD: Raf-like Ras-bin 34.2 1.2E+02 0.0027 24.1 5.6 45 112-158 3-47 (71)
252 PF02196 RBD: Raf-like Ras-bin 34.1 1.4E+02 0.0029 23.8 5.8 40 40-79 8-47 (71)
253 KOG3439 Protein conjugation fa 33.9 1.5E+02 0.0033 26.1 6.3 52 31-82 28-84 (116)
254 TIGR03260 met_CoM_red_D methyl 33.4 2.4E+02 0.0052 26.1 7.9 111 44-171 4-119 (150)
255 COG2104 ThiS Sulfur transfer p 33.3 2.3E+02 0.0049 22.6 6.9 62 35-104 2-63 (68)
256 PF02597 ThiS: ThiS family; I 33.2 1.9E+02 0.004 22.4 6.6 63 44-109 13-77 (77)
257 PRK04750 ubiB putative ubiquin 33.1 26 0.00057 38.8 2.0 37 420-456 276-312 (537)
258 cd05992 PB1 The PB1 domain is 33.0 1.1E+02 0.0024 24.1 5.2 40 118-159 8-48 (81)
259 PF00788 RA: Ras association ( 32.6 1.4E+02 0.0029 24.0 5.8 35 121-155 18-52 (93)
260 PF00788 RA: Ras association ( 32.5 2.4E+02 0.0052 22.5 7.3 32 44-75 18-51 (93)
261 TIGR02958 sec_mycoba_snm4 secr 32.4 1.6E+02 0.0035 31.9 7.9 75 34-109 3-84 (452)
262 PF12754 Blt1: Cell-cycle cont 31.7 16 0.00034 37.6 0.0 60 110-171 79-158 (309)
263 PRK06488 sulfur carrier protei 31.1 2.2E+02 0.0048 21.8 6.5 55 117-181 5-59 (65)
264 cd06411 PB1_p51 The PB1 domain 31.0 84 0.0018 25.9 4.1 36 121-158 8-43 (78)
265 cd00565 ThiS ThiaminS ubiquiti 30.4 1.7E+02 0.0037 22.4 5.8 56 117-181 4-59 (65)
266 cd01817 RGS12_RBD Ubiquitin do 30.3 2.3E+02 0.005 23.1 6.5 40 41-80 8-47 (73)
267 cd06408 PB1_NoxR The PB1 domai 30.1 1.7E+02 0.0037 24.5 5.9 45 112-159 3-48 (86)
268 PF00794 PI3K_rbd: PI3-kinase 29.4 98 0.0021 26.2 4.6 74 110-183 17-102 (106)
269 PRK07696 sulfur carrier protei 29.3 2.8E+02 0.006 21.7 6.8 60 38-105 3-63 (67)
270 PLN02799 Molybdopterin synthas 29.2 3E+02 0.0064 22.0 7.7 57 120-181 19-76 (82)
271 PF00564 PB1: PB1 domain; Int 29.1 2.2E+02 0.0048 22.4 6.5 39 118-158 9-48 (84)
272 PF04639 Baculo_E56: Baculovir 28.9 68 0.0015 32.7 3.9 36 246-291 120-155 (305)
273 PRK06944 sulfur carrier protei 28.8 2.6E+02 0.0056 21.2 7.0 62 38-108 3-64 (65)
274 TIGR01687 moaD_arch MoaD famil 28.6 2.4E+02 0.0052 22.7 6.7 58 120-181 16-82 (88)
275 cd01768 RA RA (Ras-associating 27.7 2.1E+02 0.0046 22.9 6.1 28 42-69 12-39 (87)
276 PRK08053 sulfur carrier protei 27.6 2.9E+02 0.0062 21.3 7.1 62 38-107 3-64 (66)
277 PF02017 CIDE-N: CIDE-N domain 26.3 1.4E+02 0.0031 24.6 4.7 51 130-186 21-74 (78)
278 PF02824 TGS: TGS domain; Int 26.2 1.5E+02 0.0033 22.6 4.7 59 112-181 1-59 (60)
279 KOG4572 Predicted DNA-binding 26.1 90 0.0019 36.3 4.6 53 41-94 3-57 (1424)
280 COG5100 NPL4 Nuclear pore prot 25.8 3E+02 0.0065 29.6 8.1 72 110-182 1-78 (571)
281 KOG4572 Predicted DNA-binding 25.7 1.5E+02 0.0033 34.6 6.2 75 118-194 3-81 (1424)
282 KOG0892 Protein kinase ATM/Tel 25.3 29 0.00063 44.8 0.7 43 414-459 2616-2658(2806)
283 cd01768 RA RA (Ras-associating 25.1 2E+02 0.0043 23.1 5.5 37 119-155 12-48 (87)
284 PF10209 DUF2340: Uncharacteri 24.9 1.3E+02 0.0027 27.0 4.5 55 49-103 22-106 (122)
285 cd01615 CIDE_N CIDE_N domain, 24.1 1.9E+02 0.0041 23.8 5.1 50 130-186 21-74 (78)
286 cd01817 RGS12_RBD Ubiquitin do 23.1 1.7E+02 0.0038 23.8 4.6 42 116-159 6-47 (73)
287 PF11069 DUF2870: Protein of u 23.1 1.1E+02 0.0024 26.3 3.6 33 153-186 3-35 (98)
288 PF14451 Ub-Mut7C: Mut7-C ubiq 23.0 2.8E+02 0.0061 22.8 6.0 52 119-181 22-74 (81)
289 KOG2982 Uncharacterized conser 22.1 1.2E+02 0.0025 31.8 4.2 55 124-180 352-414 (418)
290 KOG4261 Talin [Cytoskeleton] 21.8 2.4E+02 0.0053 32.8 6.9 122 36-162 6-136 (1003)
291 cd06410 PB1_UP2 Uncharacterize 21.6 2.4E+02 0.0052 24.0 5.4 38 40-78 20-57 (97)
292 cd06410 PB1_UP2 Uncharacterize 21.0 2.5E+02 0.0055 23.9 5.5 39 115-156 18-56 (97)
293 cd01777 SNX27_RA Ubiquitin dom 20.4 1.8E+02 0.004 24.4 4.4 40 35-74 3-43 (87)
294 COG1778 Low specificity phosph 20.3 14 0.0003 34.6 -2.6 37 297-343 122-158 (170)
No 1
>KOG2381 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-51 Score=406.95 Aligned_cols=196 Identities=45% Similarity=0.711 Sum_probs=177.5
Q ss_pred HHHHHHHHcCCCCccccCCCCcEEEEEeCCCCeEEEEEecCCCCCCCcCCCCCCCCCCCC-CCccCCCcCCCcchh-hee
Q 012177 260 SSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYISVFKPMDEEPMSVNNPRGLPISVDG-EGLKKGTRAGEGALR-EVA 337 (469)
Q Consensus 260 ~~~~~~~~~g~~p~~~~~gs~g~y~~~~~~g~~~~~vfKP~deEp~~~~nP~g~~~~~~~-~~~~~~~~~g~~~~r-Eva 337 (469)
.++..|++.|+.|++++.|++|+|||++..|. .+|||||+|||||+.+||+|+++...+ +|++||+++|+++.| |+|
T Consensus 2 ~~~~~a~~~g~~p~~~~~g~~gayf~~~~~~~-~~~v~kP~deEp~~~~Npk~~~~~~~g~~~~~~~~~v~~~g~~~E~a 80 (286)
T KOG2381|consen 2 REAIEAIEKGIFPELLPLGSGGAYFMQDTSGW-IVGVFKPKDEEPYARNNPKGTKVLQRGQCGCKRSCLVGNSGYRSEAA 80 (286)
T ss_pred chHHHHhhcCCCcccccCCCchhHHHhccccc-eeeccCCCcccccccCCCccCchhhccccccccceeccCccccchhh
Confidence 56789999999999999999999999999995 599999999999999999999998854 589999999888777 999
Q ss_pred eeecccCCCCcccccccccCCCCCCCeEEEEeccccccCCCCCCC--CCCCccceeEeeeecCcCCcccCCCCCCChhhh
Q 012177 338 AYILDHPRDATYSLHDEERGFAGVPPTVMVRCLHKGFNHPNGYKH--DLENVKIGSLQMFVENVGSCEEMGPRAFPVDEV 415 (469)
Q Consensus 338 Aylld~~~~~~~~~~~~~~g~~~VP~T~~v~~~~~~f~~~~~~~~--~~~~~k~GSlQ~fv~~~~~~~~~~~~~f~~~ev 415 (469)
||||||+ +|+.||+|.+++++|+.|||++++.. .....|+||+|+||++ .++.|+++..|+++|+
T Consensus 81 ayLlD~~------------~~~~Vp~t~~v~i~~~~f~~~~~~~~~~~~~~~k~gs~q~Fve~-~~~~d~~~~~F~~~e~ 147 (286)
T KOG2381|consen 81 AYLLDHP------------EFNDVPRTALVKITHFTFNYNAAFLSKRQGKKSKIGSLQLFVEG-YSAADYGLRRFEAEEV 147 (286)
T ss_pred hhccCcc------------ccCCCCceeeEEEeeecccccccceecccccccchhhHHHhhcC-ccccceeEEecccccc
Confidence 9999985 89999999999999999999987532 2334799999999999 8888999999999999
Q ss_pred hheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccCCC--CCCcCCCcCC
Q 012177 416 HKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYS--VCPFSFPLYP 469 (469)
Q Consensus 416 ~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p~~--~~~~~W~~wp 469 (469)
|||+|||+||+|||||+|||||++..........+|||||||++ +|+|+|+|||
T Consensus 148 hkivvlD~ri~NtDRh~~N~lvk~~~~~~~~~~~~Dhgl~fP~~~~d~~f~W~~~p 203 (286)
T KOG2381|consen 148 HKIVVLDIRIRNTDRHAGNWLVKKEPTLEQAAILGDHGLCFPEKHPDEWFEWLYWP 203 (286)
T ss_pred ceeEEEEEEeeccCCCCCceeEEeccCcccccccccCceeCcccCCccccchHHHH
Confidence 99999999999999999999999974333345666999999999 9999999998
No 2
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=100.00 E-value=3.2e-42 Score=330.38 Aligned_cols=153 Identities=29% Similarity=0.486 Sum_probs=131.2
Q ss_pred cCCCCc--cccCCCCcEEEEEeC-CCCeEEEEEecCCCCCCCcCCCCCCCCCCCCCCccCCCcCCCcchhheeeeecccC
Q 012177 268 RGNEPI--PSSEGSGGAYFMQDS-SGQKYISVFKPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHP 344 (469)
Q Consensus 268 ~g~~p~--~~~~gs~g~y~~~~~-~g~~~~~vfKP~deEp~~~~nP~g~~~~~~~~~~~~~~~~g~~~~rEvaAylld~~ 344 (469)
.|.+-+ ++.++||+||+|... +|....|||||..+|.++|+||+| || |.||+||||||
T Consensus 3 ~Gel~v~gri~~aSN~t~~~~~~~~~~~~~~VYKPv~gErPLWDFpdG-------------tL----a~REvAAYlvs-- 63 (253)
T TIGR03843 3 DGELTVLGRLVDASNATLLCEVTLGGVSARAVYKPVRGERPLWDFPDG-------------TL----AGREVAAYLVS-- 63 (253)
T ss_pred cceEEEEEEEccccceeEEEEEecCCeeEEEEECCcCCccccccCCCC-------------ch----HHHHHHHHHHH--
Confidence 455555 799999999999964 455678999999999999999999 78 99999999999
Q ss_pred CCCcccccccccCCCCCCCeEEEEeccccccCCCCCCCCCCCccceeEeeeecCcCC--------cccCCCCCCCh----
Q 012177 345 RDATYSLHDEERGFAGVPPTVMVRCLHKGFNHPNGYKHDLENVKIGSLQMFVENVGS--------CEEMGPRAFPV---- 412 (469)
Q Consensus 345 ~~~~~~~~~~~~g~~~VP~T~~v~~~~~~f~~~~~~~~~~~~~k~GSlQ~fv~~~~~--------~~~~~~~~f~~---- 412 (469)
+++||++||+|++++ | |.|+||+|.||+++.+ +++++++++++
T Consensus 64 ---------~~lGw~~VPpTvlrD----------G------P~G~GmvQlwie~~~~~~lv~l~~~~~~~~g~~~v~~~~ 118 (253)
T TIGR03843 64 ---------EALGWGLVPPTVLRD----------G------PFGPGMVQLWIDPDDDPDLVDLVPAGEVPEGWLPVLRAE 118 (253)
T ss_pred ---------HHhCCCcCCCeeeec----------C------CCCCceEEEeccCCCccchhhcccccccCCccccccccc
Confidence 589999999999984 5 7899999999999754 45677888864
Q ss_pred --------------hhhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccCCCCCCcCCCcCC
Q 012177 413 --------------DEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSVCPFSFPLYP 469 (469)
Q Consensus 413 --------------~ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p~~~~~~~W~~wp 469 (469)
.++|||||||++|+|+|||+||||+.++ |+ |+|||||||||+. ..++|++|+
T Consensus 119 d~~g~~v~l~h~d~~~l~riaVfDi~inNaDRk~GhiL~~~d--g~--l~~IDHGl~f~~~-~klrtvlW~ 184 (253)
T TIGR03843 119 DEEGEPVVLVHADHPQLRRMAVFDALVNNADRKGGHVLPGPD--GR--VWGVDHGVCFHVE-PKLRTVLWG 184 (253)
T ss_pred cccCcceeecccccHHHhhhhhheeeeecCCCCCCcEeEcCC--Cc--EEEecCceecCCC-Ccccccccc
Confidence 2699999999999999999999999986 65 8999999999994 445555554
No 3
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.69 E-value=8e-17 Score=138.45 Aligned_cols=92 Identities=23% Similarity=0.269 Sum_probs=87.7
Q ss_pred ccCccCccceeeeeeccccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCccccc
Q 012177 91 DYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDI 170 (469)
Q Consensus 91 dygI~~gstl~LvlrLsd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy 170 (469)
.+++.+-+++|+.+++++.|+|+||+..|+++.++|++++||.+||++|+++.|++ +++|+|+|+|+.|+|+++|++|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip--~~~QrLi~~Gk~L~D~~tL~dy 86 (103)
T cd01802 9 FFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIP--VAQQHLIWNNMELEDEYCLNDY 86 (103)
T ss_pred ccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC--hHHEEEEECCEECCCCCcHHHc
Confidence 46777888999999999999999999999999999999999999999999999988 9999999999999999999999
Q ss_pred CCCCCCEEEEEEee
Q 012177 171 CKRNEAVIHLLVRK 184 (469)
Q Consensus 171 ~I~~~svI~Lv~rk 184 (469)
+|+++++|||+++.
T Consensus 87 ~I~~~stL~l~~~l 100 (103)
T cd01802 87 NISEGCTLKLVLAM 100 (103)
T ss_pred CCCCCCEEEEEEec
Confidence 99999999998874
No 4
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.63 E-value=7.3e-16 Score=124.31 Aligned_cols=73 Identities=22% Similarity=0.324 Sum_probs=70.6
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
|+|+||+.+|++++++|++++||++||++|+++.|++ +++|+|+|+|++|+|+++|++|+|+++++|+|++|.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~--~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVP--EEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--HHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 7899999999999999999999999999999999988 999999999999999999999999999999999874
No 5
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.62 E-value=1.3e-15 Score=130.87 Aligned_cols=78 Identities=29% Similarity=0.536 Sum_probs=74.6
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
.+.|+|+| ++.|++++++|.+++||.+||++|++++|+|+.+|+|+|+|+.|. |+.+|++|+|+++++|||++++.++
T Consensus 25 ~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~-D~~tL~dy~I~~~stL~l~~~l~GG 103 (103)
T cd01802 25 YDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELE-DEYCLNDYNISEGCTLKLVLAMRGG 103 (103)
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEecCCC
Confidence 77899999 889999999999999999999999999999999999999999998 8999999999999999999988764
No 6
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.61 E-value=1.4e-15 Score=122.70 Aligned_cols=74 Identities=18% Similarity=0.332 Sum_probs=69.2
Q ss_pred EEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 34 M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
|+|+|+. +++++++|++++||++||.+|++++|+|+++|+|+|+|++|. |+.+|++|+|++++++||++++.++
T Consensus 1 mqi~vk~-~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~-D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRA-QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLE-DDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEEC-CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECC-CCCCHHHcCCCCCCEEEEEEecCCC
Confidence 7899943 478999999999999999999999999999999999999998 8999999999999999999998764
No 7
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.61 E-value=1.5e-15 Score=122.56 Aligned_cols=72 Identities=25% Similarity=0.470 Sum_probs=69.4
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeec
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (469)
|+|+| +..|++++++|.+++||.+||++|++++|+|+++|+|+|+|++|. |+.+|++|||+++++++|+++.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~-d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALA-DDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECC-CCCCHHHCCCCCCCEEEEEEcC
Confidence 79999 889999999999999999999999999999999999999999998 8999999999999999999874
No 8
>PTZ00044 ubiquitin; Provisional
Probab=99.60 E-value=2.7e-15 Score=121.14 Aligned_cols=75 Identities=23% Similarity=0.533 Sum_probs=71.9
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
|+|+| +++|+++++++.+++||++||.+|+++.|+|+.+|+|+|+|+.|. |+.+|++|+|++++++||++++.++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~-d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMS-DDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEcc-CCCcHHHcCCCCCCEEEEEEEccCC
Confidence 89999 889999999999999999999999999999999999999999998 8999999999999999999988753
No 9
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.56 E-value=9.4e-15 Score=117.90 Aligned_cols=71 Identities=17% Similarity=0.168 Sum_probs=67.2
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
|+|+||+ +++++++|++++||++||++|++++|+| +++|+|+|+|++|+|+++|++|+|+++++|||++|.
T Consensus 1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip--~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l 71 (74)
T cd01793 1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGID--VEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRL 71 (74)
T ss_pred CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCC--HHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEec
Confidence 6899998 4789999999999999999999999988 999999999999999999999999999999999874
No 10
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.55 E-value=1.1e-14 Score=119.04 Aligned_cols=74 Identities=26% Similarity=0.266 Sum_probs=69.8
Q ss_pred ceeeeeeeccee-EEEE-eecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012177 110 QAITVTTVCGKV-FEFH-VERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (469)
Q Consensus 110 m~I~Vkt~~Gk~-~~l~-V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks 185 (469)
|+|+||+.+|++ +.++ +++++||.+||++|++..|++ +++|+|+|+|+.|+|+++|++|+|+++++|+|++|..
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~--~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVE--PECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCC--HHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 789999999997 6895 899999999999999999988 9999999999999999999999999999999998854
No 11
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.55 E-value=9.6e-15 Score=119.41 Aligned_cols=73 Identities=15% Similarity=0.346 Sum_probs=69.0
Q ss_pred EEEEE-EeCCeE-EEEE-eCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecc
Q 012177 34 ILIFL-SVGGSV-IPMR-VMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (469)
Q Consensus 34 M~I~V-~l~G~~-~~l~-V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (469)
|+|+| ++.|++ ++++ +.+++||.+||++|++.+|+|+.+|+|+|+|+.|. |+.+|++|||+++++|+|++++.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~-D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQME-DGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECC-CCCCHHHcCCCCCCEEEEEEecC
Confidence 89999 889986 6895 89999999999999999999999999999999998 89999999999999999999874
No 12
>PTZ00044 ubiquitin; Provisional
Probab=99.54 E-value=1.9e-14 Score=116.27 Aligned_cols=73 Identities=25% Similarity=0.336 Sum_probs=70.6
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
|+|+||+.+|+++++++++++||++||++|++..|+| +++|+|+|+|+.|+|..+|++|+++++++|||+++.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~--~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGID--VKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQL 73 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--HHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEc
Confidence 7899999999999999999999999999999999988 999999999999999999999999999999999874
No 13
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.54 E-value=1.6e-14 Score=115.09 Aligned_cols=70 Identities=21% Similarity=0.343 Sum_probs=67.3
Q ss_pred eeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012177 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (469)
Q Consensus 112 I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~r 183 (469)
|+||+..|+++.+++++++||++||++|+++.|++ +++|+|+|+|++|+|+++|++|+|+++++|||+.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~--~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVP--PDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCC--HHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 68999999999999999999999999999999988 89999999999999999999999999999999765
No 14
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.54 E-value=1.4e-14 Score=116.96 Aligned_cols=73 Identities=23% Similarity=0.367 Sum_probs=69.1
Q ss_pred EEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 36 I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
||| ++.|++++++|++++||++||++|+++.|+|+++|+|+|+|+.|. |+.+|++|||+++++++|++++.++
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~-D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPME-DEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECC-CCCCHHHcCCCCCCEEEEEEEccCC
Confidence 678 789999999999999999999999999999999999999999998 8899999999999999999987653
No 15
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.53 E-value=2.6e-14 Score=114.85 Aligned_cols=75 Identities=29% Similarity=0.572 Sum_probs=71.4
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
|+|+| +.+|+++.++|.+++||.+||++|+++.|+|+..|+|+|+|+.|. |+.+|++|+|+++++|||+++++++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~-d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEcc-CCCCHHHcCCCCCCEEEEEEEccCC
Confidence 78999 889999999999999999999999999999999999999999998 8899999999999999999988753
No 16
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.53 E-value=2.3e-14 Score=115.16 Aligned_cols=75 Identities=36% Similarity=0.625 Sum_probs=71.6
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
|+|+| +..|+++.++|.+++||++||++|+++.|+|+.+|+|+|+|+.|. |+.+|++|++++++++++++++.++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~-d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECC-CCCcHHHcCCCCCCEEEEEEEccCC
Confidence 78999 788999999999999999999999999999999999999999998 8899999999999999999998764
No 17
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.52 E-value=3e-14 Score=114.98 Aligned_cols=71 Identities=20% Similarity=0.265 Sum_probs=68.4
Q ss_pred eeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 112 I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
|+||+..|+++++++++++||++||++|++..|+| +++|+|+|+|+.|+|+++|++|+|+++++|+|.++.
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~--~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l 71 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQ--ADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRL 71 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCC--HHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEc
Confidence 68999999999999999999999999999999988 999999999999999999999999999999998874
No 18
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.52 E-value=5.3e-14 Score=113.76 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=70.8
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks 185 (469)
|+|+|++.+|+++.+++++++||.+||++|++..++..++++|+|+|+|+.|+|+.+|++|+++++++|+++++++
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~ 76 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKP 76 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecC
Confidence 7899999999999999999999999999999999981129999999999999999999999999999999988764
No 19
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=2.2e-15 Score=127.28 Aligned_cols=75 Identities=36% Similarity=0.622 Sum_probs=72.5
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
|+||+ ++.|++++++|++++||..||.+|+.+.|+|+++|+|+|+|++|+ |..++++|||+..+|+|+++++.++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LE-D~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccc-cCCcccccCccchhhhhhhHHHhcC
Confidence 57787 999999999999999999999999999999999999999999999 9999999999999999999999887
No 20
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.50 E-value=6.4e-14 Score=114.43 Aligned_cols=75 Identities=23% Similarity=0.336 Sum_probs=70.8
Q ss_pred CEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 33 ~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
.|+|+| +..|+.++++|++++||++||.+|+++.|+++++|+|+|.|+.|. |+ +|++|||+++++|+|+..+.++
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~-d~-~L~~~gi~~~~~i~l~~~~~~~ 76 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLS-SG-KLQDLGLGDGSKLTLVPTVEAG 76 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCC-CC-cHHHcCCCCCCEEEEEeecccc
Confidence 499999 788999999999999999999999999999999999999999998 67 8999999999999999988665
No 21
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.50 E-value=5.3e-14 Score=112.71 Aligned_cols=68 Identities=21% Similarity=0.254 Sum_probs=65.5
Q ss_pred eeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 012177 113 TVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (469)
Q Consensus 113 ~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~ 182 (469)
.||+.+|+++.+++++++||++||++|++.+|+| +++|+|+|+|+.|+|+.+|.+|+|+++++|||.+
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~--~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVD--PCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCC--HHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 5788999999999999999999999999999988 9999999999999999999999999999999976
No 22
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.49 E-value=9.5e-14 Score=111.58 Aligned_cols=73 Identities=26% Similarity=0.394 Sum_probs=70.3
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
|+|+|++.+|+++.++++++.||++||++|++..++| +++|+|+|+|+.|+|.++|++|+++++++|||+++.
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~--~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~ 73 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLAL 73 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCC--hhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEc
Confidence 6899999999999999999999999999999999988 999999999999999999999999999999999874
No 23
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.49 E-value=6.2e-14 Score=113.26 Aligned_cols=70 Identities=21% Similarity=0.192 Sum_probs=66.9
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeee
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (469)
|+|+| ++.|+.+.++|++++||.+||++|+++.|+++++|||+|.|+.|. |+.+|++|||++++++||..
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~-D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFK-DHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCC-CCCCHHHcCCCCCCEEEEEe
Confidence 88999 888999999999999999999999999999999999999999998 88999999999999999864
No 24
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.49 E-value=5.6e-14 Score=112.04 Aligned_cols=69 Identities=22% Similarity=0.470 Sum_probs=65.5
Q ss_pred EEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeee
Q 012177 36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (469)
Q Consensus 36 I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (469)
|+| ++.|++++++|++++||++||.+|+++.|+|+.+|+|+|+|++|. |+.+|++|+|++++++||+.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~-d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELR-NTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEeC
Confidence 577 788999999999999999999999999999999999999999998 899999999999999999864
No 25
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.48 E-value=1.2e-13 Score=110.90 Aligned_cols=73 Identities=33% Similarity=0.454 Sum_probs=70.3
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
|+|+|++.+|+++.+++++++||++||++|++..++| +++|+|+|+|+.|+|..+|++|+++++++||++++.
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~--~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCC--HHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEc
Confidence 6899999999999999999999999999999999988 999999999999999999999999999999999874
No 26
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.48 E-value=1.3e-13 Score=109.62 Aligned_cols=72 Identities=28% Similarity=0.343 Sum_probs=69.1
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~r 183 (469)
|+|+||+.+|++++++++++.||.+||++|++..|++ ++.|+|+|+|+.|+|+++|++|+++++++|||+.|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~--~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIP--VEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 6899999999999999999999999999999999987 99999999999999999999999999999999764
No 27
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.47 E-value=9.3e-14 Score=112.23 Aligned_cols=70 Identities=14% Similarity=0.079 Sum_probs=67.5
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv 181 (469)
|.|+|++..|+.+.+++++++||++||++|+++.+++ +++|||+|.|+.|+|+.+|++|+|+++++|||.
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~--~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTR--PEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC--hHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 7899999999999999999999999999999999987 999999999999999999999999999999985
No 28
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=2e-14 Score=129.60 Aligned_cols=76 Identities=34% Similarity=0.611 Sum_probs=73.4
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeeccccc
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ 110 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~m 110 (469)
|+||| ++.+++++++|.+++||..+|.+||.++|||+++|||+|.|++|+ |+++|+||+|+..+++||+++++++.
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLe-dgrtlSDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccc-cCCccccccccccceEEEEEEecCCc
Confidence 78999 999999999999999999999999999999999999999999999 89999999999999999999998763
No 29
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.47 E-value=9.2e-14 Score=111.30 Aligned_cols=67 Identities=18% Similarity=0.342 Sum_probs=63.5
Q ss_pred EE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeee
Q 012177 37 FL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (469)
Q Consensus 37 ~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (469)
.| .++|++++++|++++||++||.+|++++|+|+++|+|+|+|++|. |+.+|.+|+|++++++||++
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~-D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLT-DKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECC-CCCCHHHcCCCCCCEEEEEe
Confidence 45 568999999999999999999999999999999999999999998 89999999999999999976
No 30
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.46 E-value=1.6e-13 Score=110.91 Aligned_cols=72 Identities=19% Similarity=0.438 Sum_probs=68.4
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCC--CCcceEEEEcCeecccCCccccccCccCccceeeeeec
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGF--FVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gi--p~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (469)
|+|+| +.+|++++++|.+++||.+||++|++++|+ ++++|+|+|+|+.|. |+.+|++|||+++++++++++-
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~-d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILK-DDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEcc-CCCCHHHcCCCCCCEEEEEEec
Confidence 89999 889999999999999999999999999999 999999999999998 8899999999999999988753
No 31
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=4.7e-14 Score=107.27 Aligned_cols=69 Identities=28% Similarity=0.587 Sum_probs=66.7
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeee
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lv 103 (469)
|.|.| +++|+.+.++++|+|+|..+|++|++++|||+.+|||+|.|++|. |+.+-++|++.-|+++||+
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~-DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMN-DDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhcccccc-ccccHHHhhhccceeEeeC
Confidence 68899 999999999999999999999999999999999999999999998 8999999999999999985
No 32
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.45 E-value=2.1e-13 Score=108.41 Aligned_cols=71 Identities=28% Similarity=0.488 Sum_probs=67.7
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeee
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (469)
|+|+| ++.|+++++++.+++||.+||++|++..|+|+..|+|+|+|+.|. |+.+|++|||++++++||+.+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~-d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLK-DDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECC-CcCcHHHCCCCCCCEEEEEeC
Confidence 78999 888999999999999999999999999999999999999999998 889999999999999998764
No 33
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.44 E-value=3.5e-13 Score=110.11 Aligned_cols=73 Identities=14% Similarity=0.211 Sum_probs=69.1
Q ss_pred cceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
.|+|+|++..|+.+.++++++.||++||++|+++.+++ +++|+|+|+|+.|+|+ +|.+|+|+++++|+|+...
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~--~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~ 73 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVP--KERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTV 73 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCC--hHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeec
Confidence 38899999999999999999999999999999999987 9999999999999999 9999999999999998764
No 34
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.44 E-value=2.1e-13 Score=111.71 Aligned_cols=74 Identities=23% Similarity=0.193 Sum_probs=70.5
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEE--EECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL--ICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrL--if~Gk~LeD~~tL~dy~I~~~svI~Lv~rks 185 (469)
|+|+|++..|+++.++++++.||++||++|++..+++ +++|+| .|+|+.|+|+++|++|+++++++|+|++++-
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~--~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~~ 78 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVP--AFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQNC 78 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCC--HHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 7899999999999999999999999999999999987 999999 8999999999999999999999999998853
No 35
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.43 E-value=3.7e-13 Score=107.67 Aligned_cols=71 Identities=24% Similarity=0.298 Sum_probs=66.5
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~r 183 (469)
+.|+|++..|+ ..++++++.||++||++|++..+++ +++|+|+|+|+.|+|+++|++|+++++++|||++|
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~--~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKAN--QEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCC--HHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 46899999997 5899999999999999999999987 99999999999999999999999999999999875
No 36
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.41 E-value=7.5e-13 Score=104.70 Aligned_cols=68 Identities=31% Similarity=0.528 Sum_probs=65.0
Q ss_pred eeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 115 TTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 115 kt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
||.+|+.+.++|++++||.+||++|++..+++ +++|+|+|+|++|+|..+|.+|+|+++++|+|+.++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~--~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIP--PEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTST--GGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccc--cccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 57899999999999999999999999999988 999999999999999999999999999999998764
No 37
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.40 E-value=5.5e-13 Score=109.28 Aligned_cols=72 Identities=19% Similarity=0.261 Sum_probs=68.5
Q ss_pred CEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEE--EEcCeecccCCccccccCccCccceeeeee
Q 012177 33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKL--VFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (469)
Q Consensus 33 ~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrL--vf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (469)
.|+|+| +..|+++.++|++++||++||++|+++.|+++++|+| +|+|+.|. |+.+|++|||+++++|+|+++
T Consensus 2 ~~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~-D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 2 GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQ-DGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred ceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCC-CCCCHHHcCCCCCCEEEEEEE
Confidence 389999 8889999999999999999999999999999999999 89999998 889999999999999999887
No 38
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.40 E-value=5.8e-13 Score=108.10 Aligned_cols=70 Identities=27% Similarity=0.476 Sum_probs=66.2
Q ss_pred EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 39 ~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
.++|++++++|++++||++||.+|++.+|+|+.+|+|+|.|+.|. |+.+|++|+|+++++|+|++++.++
T Consensus 4 ~l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~-d~~tL~~~~i~~g~~l~v~~~~~gg 73 (76)
T cd01800 4 KLNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIK-DSNSLAYYNLANGTIIHLQLKERGG 73 (76)
T ss_pred ccCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcC-CCCcHHHcCCCCCCEEEEEEecCCC
Confidence 367999999999999999999999999999999999999999998 8899999999999999999998764
No 39
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.40 E-value=6.3e-13 Score=106.33 Aligned_cols=70 Identities=19% Similarity=0.296 Sum_probs=65.1
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeee
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (469)
|+|+| +..|+ .++++++++||.+||++|+++.|+++.+|+|+|+|+.|. |+.+|++|||++++++||+++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~-d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILK-DTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcC-CCCcHHHcCCCCCCEEEEEEC
Confidence 57888 77887 489999999999999999999999999999999999998 889999999999999999874
No 40
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.4e-13 Score=103.41 Aligned_cols=70 Identities=26% Similarity=0.384 Sum_probs=67.5
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv 181 (469)
|.|.|+|++|+.+.++++++++|..+|++|++++|+| |.+|||+|.|++|.|+.+-.+|++..||++|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIP--p~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCC--chhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 5688999999999999999999999999999999999 999999999999999999999999999999984
No 41
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.39 E-value=6.8e-13 Score=106.42 Aligned_cols=67 Identities=24% Similarity=0.420 Sum_probs=61.8
Q ss_pred EEE-Ee-CCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCC-ccccccCccCccceeee
Q 012177 36 IFL-SV-GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSN-SRVRDYGLADGNVLHLV 103 (469)
Q Consensus 36 I~V-~l-~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~-~tL~dygI~~gstl~Lv 103 (469)
|+| +. .|++++++|++++||++||.+|++++|+|+++|+|+|+|++|. |+ .+|++|||+++++++|.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~-D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELV-DNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEcc-CCcccHHHcCCCCCCEEEEe
Confidence 466 56 8899999999999999999999999999999999999999998 55 78999999999999874
No 42
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=4.2e-14 Score=119.59 Aligned_cols=73 Identities=33% Similarity=0.454 Sum_probs=70.2
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
|+++|++++|++.++++++++||.+||++|+.++|++ +++|+|+|+|++|||++|+++|+++..++||++.|.
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~--~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL 73 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCC--HHHHHHHhcccccccCCcccccCccchhhhhhhHHH
Confidence 5789999999999999999999999999999999998 999999999999999999999999999999998773
No 43
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.38 E-value=1e-12 Score=105.35 Aligned_cols=68 Identities=25% Similarity=0.302 Sum_probs=64.0
Q ss_pred eeeeee-cceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCC-CcccccCCCCCCEEEEE
Q 012177 112 ITVTTV-CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQ-RLITDICKRNEAVIHLL 181 (469)
Q Consensus 112 I~Vkt~-~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~-~tL~dy~I~~~svI~Lv 181 (469)
|+|++. +|+++.++++++.||++||++|++..|+| +++|+|+|+|+.|+|+ .+|++|+|+++++|+|.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip--~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIP--ASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCC--HHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 578999 99999999999999999999999999988 9999999999999987 68999999999999973
No 44
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.38 E-value=1.6e-12 Score=102.85 Aligned_cols=67 Identities=30% Similarity=0.659 Sum_probs=63.7
Q ss_pred EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeec
Q 012177 39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (469)
Q Consensus 39 ~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (469)
+++|++++++|.+++||.+||.+|+++.|+|++.|+|+|+|+.|. |+.+|++|||+++++|+|+++.
T Consensus 2 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~-d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 2 TLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELD-DDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp ETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEES-TTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeeccc-CcCcHHHcCCCCCCEEEEEEec
Confidence 357899999999999999999999999999999999999999996 9999999999999999998875
No 45
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=2.9e-13 Score=122.13 Aligned_cols=73 Identities=33% Similarity=0.459 Sum_probs=70.8
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
|.|+|+++.|+++.++|++++||..+|++|+.+++|| +++|||+|.|++|+|+++|+||+|+..++|||+++-
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp--~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l 73 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCC--chhhhhhhhhcccccCCccccccccccceEEEEEEe
Confidence 6899999999999999999999999999999999999 999999999999999999999999999999999873
No 46
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.32 E-value=4.4e-12 Score=100.73 Aligned_cols=70 Identities=21% Similarity=0.369 Sum_probs=65.5
Q ss_pred EEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeee
Q 012177 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (469)
Q Consensus 34 M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (469)
|+|+|...|+++++++.+++||++||.+|++.+|+|++.|+|+|+|+.|. |+.+|++|||++|++|+++.
T Consensus 1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~-d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERD-DAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccC-ccCcHHHcCCCCCCEEEEec
Confidence 57888667999999999999999999999999999999999999999998 88999999999999998864
No 47
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.31 E-value=8.9e-12 Score=103.87 Aligned_cols=81 Identities=15% Similarity=0.317 Sum_probs=76.0
Q ss_pred CCCCCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeec
Q 012177 28 KLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (469)
Q Consensus 28 ~~~~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (469)
+..+..|+|+| +..|+++.++|.+++|+..||.+++++.|+++++|+|+|+|+.|. ++.|+.+|++.++++|++++++
T Consensus 6 ~~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~-~~~T~~~l~m~d~d~I~v~l~l 84 (87)
T cd01763 6 GEISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIR-DNQTPDDLGMEDGDEIEVMLEQ 84 (87)
T ss_pred CCCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECC-CCCCHHHcCCCCCCEEEEEEec
Confidence 45688999999 888999999999999999999999999999999999999999998 8999999999999999999988
Q ss_pred ccc
Q 012177 107 SDL 109 (469)
Q Consensus 107 sd~ 109 (469)
.++
T Consensus 85 ~GG 87 (87)
T cd01763 85 TGG 87 (87)
T ss_pred ccC
Confidence 754
No 48
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.31 E-value=4.5e-12 Score=103.72 Aligned_cols=72 Identities=18% Similarity=0.216 Sum_probs=63.3
Q ss_pred ceeeeeeeccee--EEEEeecCchHHHHHHHHHHhcC-CCCCCCceEEEECCEEcCCCCcccccC--CCCCCEEEEEE
Q 012177 110 QAITVTTVCGKV--FEFHVERGRNVGYVKQQIAKKGR-EFVDLKNQELICDGEELEDQRLITDIC--KRNEAVIHLLV 182 (469)
Q Consensus 110 m~I~Vkt~~Gk~--~~l~V~~~~TV~~LK~kI~~~~g-ip~~~e~QrLif~Gk~LeD~~tL~dy~--I~~~svI~Lv~ 182 (469)
+.|+||+.++++ +.++++++.||.+||++|++..+ .+ ++++|+|+|+|+.|+|..+|++|. +.++.+|||+.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~-~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKP-LEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCC-ChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 578999999998 44555899999999999999874 33 479999999999999999999996 99999999974
No 49
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.29 E-value=8.8e-12 Score=100.94 Aligned_cols=70 Identities=16% Similarity=0.344 Sum_probs=65.5
Q ss_pred EEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEE---cCeecccCCccccccCccCccceeeee
Q 012177 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF---EGRELARSNSRVRDYGLADGNVLHLVL 104 (469)
Q Consensus 34 M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf---~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (469)
|.|.|...|++++++|++++||++||++|++++|+|+++|+|+| .|+.|. |+.+|++|+|++++.++|+-
T Consensus 1 ~~i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~-D~~~L~~~~i~~g~~i~lmG 73 (74)
T cd01813 1 VPVIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAE-DDVKISALKLKPNTKIMMMG 73 (74)
T ss_pred CEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCC-CCcCHHHcCCCCCCEEEEEe
Confidence 56888889999999999999999999999999999999999996 899998 89999999999999998863
No 50
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.28 E-value=9.5e-12 Score=98.80 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=65.9
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~ 182 (469)
++|.||+. |+.+.++++++.||++||++|++..|++ +++|+|+|+|+.|+|.++|++|+++++++|+++.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~--~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVE--PRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCC--hHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 47889986 9999999999999999999999999988 9999999999999999999999999999999863
No 51
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.27 E-value=1.3e-11 Score=100.25 Aligned_cols=66 Identities=20% Similarity=0.301 Sum_probs=63.2
Q ss_pred ecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 117 ~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
++|+++++++++++||++||++|+...|+| +++|+|+|+|+.|+|+++|++|+++++++|+|+++.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip--~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~ 70 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMP--AGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKE 70 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCC--HHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEec
Confidence 578999999999999999999999999988 999999999999999999999999999999999885
No 52
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.25 E-value=1.2e-11 Score=101.27 Aligned_cols=71 Identities=15% Similarity=0.280 Sum_probs=62.3
Q ss_pred CEEEEE-EeCCeE--EEEEeCCCCcHHHHHHHHHHHhC--CCCcceEEEEcCeecccCCccccccC--ccCccceeeee
Q 012177 33 SILIFL-SVGGSV--IPMRVMESDSIASVKLRIQSYNG--FFVKKQKLVFEGRELARSNSRVRDYG--LADGNVLHLVL 104 (469)
Q Consensus 33 ~M~I~V-~l~G~~--~~l~V~~sdTV~~LK~kIq~~~G--ip~~~QrLvf~Gk~L~~D~~tL~dyg--I~~gstl~Lvl 104 (469)
+|.|+| +.+++. +++++++++||.+||++|++..+ .++++|||+|.|+.|. |+.+|++|. +.++.++||+.
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLk-D~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLP-DHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeecc-chhhHHHHhhcccCCceEEEEe
Confidence 478889 778887 55666899999999999999874 5589999999999998 899999996 99999999985
No 53
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.24 E-value=1.9e-11 Score=99.29 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=61.7
Q ss_pred EEEE--E-eCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcc-Cccceeeee
Q 012177 35 LIFL--S-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLA-DGNVLHLVL 104 (469)
Q Consensus 35 ~I~V--~-l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~-~gstl~Lvl 104 (469)
.++| . ..|.+++++|.+++||++||.+|++++|+|+++|+| |.|+.|.+|+.+|++||++ +|++++|.+
T Consensus 2 ~~~~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 2 NVSVEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred EEEEeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 4566 2 357899999999999999999999999999999999 9999997677999999999 789999864
No 54
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.22 E-value=5e-11 Score=99.33 Aligned_cols=76 Identities=13% Similarity=0.262 Sum_probs=72.2
Q ss_pred cccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
+..|.|.|++.+|+.+.++|.+++++..||++++++.|++ +++|+|+|+|+.|+++.|+.+|+++++++|+++++.
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~--~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l 84 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLS--MNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQ 84 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCC--ccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEec
Confidence 4568899999999999999999999999999999999998 899999999999999999999999999999998874
No 55
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.18 E-value=5.9e-11 Score=123.44 Aligned_cols=76 Identities=20% Similarity=0.317 Sum_probs=71.5
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcC---CCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGR---EFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~g---ip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks~ 186 (469)
|+|+|||+.|+++.++|++++||.+||++|+...| ++ +++|+|+|+|+.|+|+++|.+|+|+++++|++++.+..
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip--~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~k 78 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYP--VAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKPK 78 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCC--hhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccCC
Confidence 78999999999999999999999999999999988 76 89999999999999999999999999999999988654
Q ss_pred c
Q 012177 187 K 187 (469)
Q Consensus 187 k 187 (469)
.
T Consensus 79 ~ 79 (378)
T TIGR00601 79 T 79 (378)
T ss_pred C
Confidence 4
No 56
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.14 E-value=4.5e-11 Score=96.74 Aligned_cols=55 Identities=20% Similarity=0.346 Sum_probs=49.8
Q ss_pred eCC-CCcHHHHHHHHHHHh--CCC-CcceEEEEcCeecccCCccccccCccCccceeeee
Q 012177 49 VME-SDSIASVKLRIQSYN--GFF-VKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (469)
Q Consensus 49 V~~-sdTV~~LK~kIq~~~--Gip-~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (469)
|++ ++||.+||++|+++. |++ +++|||+|.|++|. |+.+|++|||+++++|||+.
T Consensus 16 ~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~-D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 16 VSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLK-DDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred cCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCC-CCCcHHHcCCCCCCEEEEEe
Confidence 454 889999999999995 575 99999999999998 89999999999999999874
No 57
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.13 E-value=1.6e-10 Score=93.57 Aligned_cols=69 Identities=19% Similarity=0.202 Sum_probs=63.7
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEE---CCEEcCCCCcccccCCCCCCEEEEE
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---DGEELEDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif---~Gk~LeD~~tL~dy~I~~~svI~Lv 181 (469)
|.|.|+ ..|+++.++|++++||++||++|++..++| +++|+|+| .|+.|+|+.+|++|++++++.|+|+
T Consensus 1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp--~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVL--PERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCC--HHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 356676 578999999999999999999999999988 99999996 9999999999999999999999986
No 58
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.12 E-value=1.4e-10 Score=89.41 Aligned_cols=63 Identities=27% Similarity=0.581 Sum_probs=58.5
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCcc
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGN 98 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gs 98 (469)
|+|+| ..+ +++.++|.+++||++||.+|+.+.|+|+..|+|+|+|+.|. |+.+|.+|||++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~-d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLE-DDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECC-CCCCHHHcCCcCCC
Confidence 78999 555 79999999999999999999999999999999999999998 78999999999874
No 59
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.10 E-value=2.1e-10 Score=88.42 Aligned_cols=64 Identities=27% Similarity=0.343 Sum_probs=60.1
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCC
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEA 176 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~s 176 (469)
|+|+||+.+ +.+.++|+++.||++||++|+...+++ ++.|+|+|+|+.|.|..+|.+|++++++
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~--~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIP--VEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCC--HHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 679999988 789999999999999999999999987 8999999999999999999999998874
No 60
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.08 E-value=1.9e-10 Score=119.61 Aligned_cols=72 Identities=17% Similarity=0.437 Sum_probs=68.0
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhC---CCCcceEEEEcCeecccCCccccccCccCccceeeeeec
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNG---FFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~G---ip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (469)
|+|+| ++.|+++.|+|++++||.+||.+|+...| +++.+|+|+|.|+.|. |+.+|++|+|+++++|+++++-
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~-Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILS-DDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECC-CCCcHHHcCCCCCCEEEEEecc
Confidence 89999 89999999999999999999999999998 9999999999999998 8899999999999999887643
No 61
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.07 E-value=1.6e-10 Score=93.55 Aligned_cols=54 Identities=28% Similarity=0.273 Sum_probs=48.7
Q ss_pred cCchHHHHHHHHHHhc--CCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 012177 128 RGRNVGYVKQQIAKKG--REFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (469)
Q Consensus 128 ~~~TV~~LK~kI~~~~--gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~ 182 (469)
.++||.+||++|+++. +++ ++++|+|+|+|+.|+|+++|++|+|+++++|||+.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~-~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLP-DPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCC-ChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 3679999999999995 454 38999999999999999999999999999999964
No 62
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.02 E-value=3.9e-10 Score=97.43 Aligned_cols=77 Identities=14% Similarity=0.203 Sum_probs=62.8
Q ss_pred ceeeeeeecceeEE-EEeecCchHHHHHHHHHHhc-----CCCCCCCceEEEECCEEcCCCCcccccC------CCCCCE
Q 012177 110 QAITVTTVCGKVFE-FHVERGRNVGYVKQQIAKKG-----REFVDLKNQELICDGEELEDQRLITDIC------KRNEAV 177 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~-l~V~~~~TV~~LK~kI~~~~-----gip~~~e~QrLif~Gk~LeD~~tL~dy~------I~~~sv 177 (469)
+.|..|..+|..+. +.+.+++||++||++|++.. ++|.++++|+|+|.|+.|+|++||++|+ +....|
T Consensus 5 ~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~T 84 (113)
T cd01814 5 IEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVIT 84 (113)
T ss_pred EEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceE
Confidence 34555556665444 77889999999999999554 4555689999999999999999999999 778899
Q ss_pred EEEEEeeCC
Q 012177 178 IHLLVRKSA 186 (469)
Q Consensus 178 I~Lv~rks~ 186 (469)
+||++|.+.
T Consensus 85 mHvvlr~~~ 93 (113)
T cd01814 85 MHVVVQPPL 93 (113)
T ss_pred EEEEecCCC
Confidence 999999554
No 63
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.00 E-value=7.9e-10 Score=89.81 Aligned_cols=64 Identities=17% Similarity=0.064 Sum_probs=58.3
Q ss_pred eecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcC-CCCcccccCCC-CCCEEEEEE
Q 012177 116 TVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELE-DQRLITDICKR-NEAVIHLLV 182 (469)
Q Consensus 116 t~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~Le-D~~tL~dy~I~-~~svI~Lv~ 182 (469)
...|.++++++++++||++||++|++++|+| +++|+| |+|+.|. |.++|++|+++ +|++++|.+
T Consensus 9 ~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip--~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 9 QSHTVTIWLTVRPDMTVAQLKDKVFLDYGFP--PAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred ccCCCeEEEEECCCCcHHHHHHHHHHHHCcC--HHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 3568899999999999999999999999998 999999 9999995 77999999998 889999864
No 64
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.97 E-value=9.5e-10 Score=92.66 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=59.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeec
Q 012177 44 VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (469)
Q Consensus 44 ~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (469)
..+++|++++||.+||.+|+++.++++.+|+|.|+|+.|.||.++|++|||..+++|.|.++.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence 567889999999999999999999999999999999999999999999999999999988754
No 65
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=98.94 E-value=3.2e-12 Score=124.24 Aligned_cols=138 Identities=28% Similarity=0.319 Sum_probs=70.9
Q ss_pred CcCCCcchhheeeeecccCCCCccc--ccccccCCCCCCCeEEEEeccccccCCCCC------CCCCCCccceeEeeeec
Q 012177 326 TRAGEGALREVAAYILDHPRDATYS--LHDEERGFAGVPPTVMVRCLHKGFNHPNGY------KHDLENVKIGSLQMFVE 397 (469)
Q Consensus 326 ~~~g~~~~rEvaAylld~~~~~~~~--~~~~~~g~~~VP~T~~v~~~~~~f~~~~~~------~~~~~~~k~GSlQ~fv~ 397 (469)
++.++++.+++++|.+....+..+. .-+....+..|+.|...+..++.+++.... .......+.++.|.|++
T Consensus 28 ~l~~~~~~~~~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 107 (235)
T PF00454_consen 28 ILKKEGETREIRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGHSNDNPSRKYKAKLFEKQSSKVPKDGLRQYFLK 107 (235)
T ss_dssp HHHHTT---------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTTTCSC------------------TTHHHHHHHH
T ss_pred HHhcCCCCceEEEeEEEecCCCCceeEEeccccchhHhhccccccccccccccccccccccccccccccccchHHHHHHh
Confidence 3446778888999999853111000 001122333444444444444444433211 11244678899999999
Q ss_pred CcCCcccCC-CCCCChhhhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccC------CCCCCcCCC
Q 012177 398 NVGSCEEMG-PRAFPVDEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLP------YSVCPFSFP 466 (469)
Q Consensus 398 ~~~~~~~~~-~~~f~~~ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p------~~~~~~~W~ 466 (469)
...+++++. ....-..++++++|+||++.|.|||.+|||+... +|+ +++||||+||+ ....+|.|.
T Consensus 108 ~~~~~~~~~~~r~~f~~sla~~si~~yilg~gDRh~~Nili~~~-~g~--~~hIDfg~~f~~~~~~~~e~vPFrLT 180 (235)
T PF00454_consen 108 SFPSAEEWFEARKNFTRSLAAYSILDYILGLGDRHPGNILIDKK-TGE--LIHIDFGFIFGGKHLPVPETVPFRLT 180 (235)
T ss_dssp HSCTTHHHHHHHHHHHHHHHHHHHHHHHHT-CS--TTTEEE-ET-TSE--EEE--HSSCTTHHHGSSSS--SSTTH
T ss_pred cCCChhhhHhhhHhhHHHHHHHhhceEEEeecCCCchhheeccc-cce--eeeEEeHHhhhccccCCCCCCCeEeC
Confidence 988876664 3333467899999999999999999999999552 366 99999999999 117788874
No 66
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.87 E-value=6.5e-09 Score=81.14 Aligned_cols=67 Identities=31% Similarity=0.469 Sum_probs=62.7
Q ss_pred eeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 012177 114 VTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (469)
Q Consensus 114 Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~ 182 (469)
|+..+|+.+.+++.++.||++||++|+...+++ ++.|+|.|+|+.|+|..+|.+|++.+++.|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~--~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVP--PEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcC--hHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 667789999999999999999999999999987 9999999999999999999999999999999864
No 67
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.83 E-value=3.5e-09 Score=91.55 Aligned_cols=75 Identities=21% Similarity=0.259 Sum_probs=61.2
Q ss_pred CCEEEEEEe-CC-eEEEEEeCCCCcHHHHHHHHHHH-----hCCC--CcceEEEEcCeecccCCccccccC------ccC
Q 012177 32 DSILIFLSV-GG-SVIPMRVMESDSIASVKLRIQSY-----NGFF--VKKQKLVFEGRELARSNSRVRDYG------LAD 96 (469)
Q Consensus 32 ~~M~I~V~l-~G-~~~~l~V~~sdTV~~LK~kIq~~-----~Gip--~~~QrLvf~Gk~L~~D~~tL~dyg------I~~ 96 (469)
+.+.|...+ .| -.=+..+.+++||++||++|++. +++| +++|+|+|+|+.|. |+.+|++|+ +..
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLe-D~~TL~d~~~p~g~~~~~ 81 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILE-NSKTVGECRSPVGDIAGG 81 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecC-CCCcHHHhCCcccccCCC
Confidence 345555533 44 45577888999999999999944 4555 99999999999998 899999999 777
Q ss_pred ccceeeeeecc
Q 012177 97 GNVLHLVLRLS 107 (469)
Q Consensus 97 gstl~LvlrLs 107 (469)
..|+||+++.+
T Consensus 82 ~~TmHvvlr~~ 92 (113)
T cd01814 82 VITMHVVVQPP 92 (113)
T ss_pred ceEEEEEecCC
Confidence 89999999875
No 68
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.82 E-value=1.5e-08 Score=80.81 Aligned_cols=71 Identities=21% Similarity=0.290 Sum_probs=65.1
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCC-CceEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDL-KNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~-e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~ 182 (469)
|+|.|++.+|+.+.+.|.+++++..|++..+++.+++ . +..+|+|+|++|.++.|+.+|+++++++|++++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~--~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIP--PEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTT--T-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCC--ccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 5789999999999999999999999999999999988 7 999999999999999999999999999999863
No 69
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.80 E-value=6.9e-09 Score=109.04 Aligned_cols=77 Identities=22% Similarity=0.286 Sum_probs=70.7
Q ss_pred ccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCCc
Q 012177 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAK 187 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks~k 187 (469)
..++|+|||.++ +..+.|....||.++|++|+...+.+ +++++|+|.||.|+|+.+|..|+|++|.+||||.+...+
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~--~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~~~ 90 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAP--PDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQPR 90 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCC--hhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccCCC
Confidence 357899999988 78999999999999999999999987 999999999999999999999999999999999875433
No 70
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.80 E-value=9.9e-09 Score=103.07 Aligned_cols=77 Identities=22% Similarity=0.294 Sum_probs=71.7
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks~ 186 (469)
|.|+|||+.|.+|++++.+++||..+|++|+...|-..|.++|+|+|+|+.|.|..++.+|++..+..|.+++.|+.
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k 77 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKDK 77 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecCc
Confidence 68999999999999999999999999999999999444599999999999999999999999999999999888775
No 71
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.79 E-value=3.1e-08 Score=82.12 Aligned_cols=70 Identities=17% Similarity=0.328 Sum_probs=60.0
Q ss_pred EEEEEEeC--CeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEE-EcCe-----ecccCCccccccCccCccceeee
Q 012177 34 ILIFLSVG--GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV-FEGR-----ELARSNSRVRDYGLADGNVLHLV 103 (469)
Q Consensus 34 M~I~V~l~--G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv-f~Gk-----~L~~D~~tL~dygI~~gstl~Lv 103 (469)
+.|+|+.+ ......++.++.||.+||++++...|+++..|+|. |.|+ .|.+|+.+|.+|++++|.+||++
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 45666443 55666679999999999999999999999999995 7888 68778899999999999999986
No 72
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.78 E-value=1.6e-08 Score=78.91 Aligned_cols=64 Identities=33% Similarity=0.658 Sum_probs=59.7
Q ss_pred eCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeee
Q 012177 40 VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (469)
Q Consensus 40 l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (469)
.+|+.+.+++.++.||.+||.+|++..|+++..|+|+|+|+.|. |+.+|.+|++.++++|++..
T Consensus 5 ~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~-d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 5 LTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILK-DDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred cCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCC-CcCCHHHCCCCCCCEEEEEE
Confidence 46889999999999999999999999999999999999999997 88999999999999998764
No 73
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.77 E-value=8.9e-09 Score=103.39 Aligned_cols=73 Identities=19% Similarity=0.439 Sum_probs=68.9
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhC--CCCcceEEEEcCeecccCCccccccCccCccceeeeeecc
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNG--FFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~G--ip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (469)
|+|+| ++.++++++++.|++||.++|++|+...| +|+.+|+|+|+|+.|. |+.++.+|+|+++..+.+++.-+
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~-D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILK-DETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceecc-CCcchhhhccccCceEEEEEecC
Confidence 78999 99999999999999999999999999999 9999999999999998 99999999999999888777654
No 74
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.76 E-value=9.3e-09 Score=108.06 Aligned_cols=75 Identities=23% Similarity=0.382 Sum_probs=68.7
Q ss_pred CCEEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecc
Q 012177 32 DSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (469)
Q Consensus 32 ~~M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (469)
..|+|+|+..+..+.+.|..+.||.+||++|....++++++|+|+|.||.|. |+.+|..|||++|.||||+++..
T Consensus 14 ~~irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILK-D~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 14 SLIRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILK-DDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred ceeEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCcccc-ChhhHHHcCCCCCcEEEEEeccC
Confidence 5688999444449999999999999999999999999999999999999998 99999999999999999998764
No 75
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.74 E-value=3.1e-08 Score=79.00 Aligned_cols=70 Identities=23% Similarity=0.470 Sum_probs=63.9
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCC-cceEEEEcCeecccCCccccccCccCccceeeee
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFV-KKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~-~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (469)
|+|+| ..+|+.+.+.|.+++++..|+.+.+++.|++. +..+|+|+|+.|. ++.|+++|++.++++|++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~-~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLD-PNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE--TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcC-CCCCHHHCCCCCCCEEEEEC
Confidence 78999 77889999999999999999999999999999 9999999999997 88999999999999999864
No 76
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.73 E-value=2.4e-08 Score=84.29 Aligned_cols=61 Identities=23% Similarity=0.128 Sum_probs=56.9
Q ss_pred eEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcC-CCCcccccCCCCCCEEEEEEe
Q 012177 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELE-DQRLITDICKRNEAVIHLLVR 183 (469)
Q Consensus 121 ~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~Le-D~~tL~dy~I~~~svI~Lv~r 183 (469)
...++|++++||.+||.+|+..++++ +++|+|.|+|+.|. |.++|++|++..+++|.|.+.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~--P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVA--PFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCC--cccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence 56788999999999999999999988 99999999999996 589999999999999999875
No 77
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.72 E-value=5.4e-08 Score=75.56 Aligned_cols=71 Identities=38% Similarity=0.700 Sum_probs=66.6
Q ss_pred EEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecc
Q 012177 36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (469)
Q Consensus 36 I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (469)
+++ ++.|+++.+++.++++|..+|.+|+.+.|++..+|++.+.|+.|+ |+.++.+|+|..+++++|..++.
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~-d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLE-DGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECc-CCCcHHHhCCCCCCEEEEEEecC
Confidence 456 788999999999999999999999999999999999999999998 88999999999999999988765
No 78
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.66 E-value=1.6e-07 Score=72.86 Aligned_cols=71 Identities=30% Similarity=0.407 Sum_probs=66.9
Q ss_pred eeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 112 I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
+++++..|+++.+++.++.+|..+|.+|+...+++ ..+|++.+.|+.|+|..++.+|+|..+++++|..+.
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~--~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~ 72 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIP--VDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSL 72 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCC--CeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEec
Confidence 57788999999999999999999999999999988 899999999999999999999999999999997764
No 79
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.43 E-value=1e-06 Score=73.25 Aligned_cols=70 Identities=20% Similarity=0.450 Sum_probs=57.3
Q ss_pred EEEEEEeCC---eEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEc----C---eecccCCccccccCccCccceeee
Q 012177 34 ILIFLSVGG---SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE----G---RELARSNSRVRDYGLADGNVLHLV 103 (469)
Q Consensus 34 M~I~V~l~G---~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~----G---k~L~~D~~tL~dygI~~gstl~Lv 103 (469)
+.|+|+.+. .....++.++.||.+||.+|+..+|+++..|+|.+. + ..+.+|..+|.+||+++|.+||+.
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 567774433 489999999999999999999999999999999876 1 336668899999999999999875
No 80
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.39 E-value=1.5e-06 Score=71.97 Aligned_cols=64 Identities=20% Similarity=0.262 Sum_probs=55.3
Q ss_pred ceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEE-ECCE-----Ec-CCCCcccccCCCCCCEEEEEEee
Q 012177 119 GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI-CDGE-----EL-EDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 119 Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLi-f~Gk-----~L-eD~~tL~dy~I~~~svI~Lv~rk 184 (469)
.......+.++.||.+||++|+...|++ +..|+|. |.|+ +| +|.++|.+|++++|..||++-..
T Consensus 12 ~~~~ekr~~~~~Tv~~lK~kl~~~~G~~--~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~~ 82 (84)
T cd01789 12 SFSFEKKYSRGLTIAELKKKLELVVGTP--ASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDVS 82 (84)
T ss_pred ceeeeEecCCCCcHHHHHHHHHHHHCCC--ccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeCC
Confidence 4455667999999999999999999998 9999995 8888 56 67899999999999999997543
No 81
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.35 E-value=1.2e-06 Score=75.91 Aligned_cols=75 Identities=20% Similarity=0.196 Sum_probs=63.7
Q ss_pred EEEEE--EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCc-------cCccceeeee
Q 012177 34 ILIFL--SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL-------ADGNVLHLVL 104 (469)
Q Consensus 34 M~I~V--~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI-------~~gstl~Lvl 104 (469)
|.+|+ .....++.+++.++.||.+||.+|+.....|+..|+|+-.+..|+ |+.+|+|||+ +..+++-|.+
T Consensus 1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLe-D~kTL~d~g~t~~~akaq~pA~vgLa~ 79 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLD-DGKTLGDCGFTSQTARPQAPATVGLAF 79 (119)
T ss_pred CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeec-ccccHHHcCccccccccCCCCeEEEEE
Confidence 34454 666778999999999999999999999999999999996667776 9999999999 6688888887
Q ss_pred ecccc
Q 012177 105 RLSDL 109 (469)
Q Consensus 105 rLsd~ 109 (469)
|-.++
T Consensus 80 r~~d~ 84 (119)
T cd01788 80 RSSDD 84 (119)
T ss_pred ecCCC
Confidence 75433
No 82
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.29 E-value=5.4e-06 Score=72.41 Aligned_cols=76 Identities=25% Similarity=0.321 Sum_probs=56.2
Q ss_pred eeeeeeecce-eEEEEeecCchHHHHHHHHHHhcC-----CCCCCCceEEEECCEEcCCCCcccccCCCCCC------EE
Q 012177 111 AITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGR-----EFVDLKNQELICDGEELEDQRLITDICKRNEA------VI 178 (469)
Q Consensus 111 ~I~Vkt~~Gk-~~~l~V~~~~TV~~LK~kI~~~~g-----ip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~s------vI 178 (469)
.|..+..+|. ...+..+++.||++||++|...+. .|..+.+.||+|.|+.|+|..+|.++.+..+. ++
T Consensus 4 ~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vm 83 (111)
T PF13881_consen 4 ELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVM 83 (111)
T ss_dssp EEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEE
T ss_pred EEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEE
Confidence 3444556788 777999999999999999998762 23356899999999999999999999876554 78
Q ss_pred EEEEeeCC
Q 012177 179 HLLVRKSA 186 (469)
Q Consensus 179 ~Lv~rks~ 186 (469)
||++|...
T Consensus 84 Hlvvrp~~ 91 (111)
T PF13881_consen 84 HLVVRPNA 91 (111)
T ss_dssp EEEE-SSS
T ss_pred EEEecCCC
Confidence 99888654
No 83
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.22 E-value=5.1e-06 Score=71.94 Aligned_cols=64 Identities=19% Similarity=0.152 Sum_probs=57.6
Q ss_pred eeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCC-------CCCCEEEEEEeeC
Q 012177 120 KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICK-------RNEAVIHLLVRKS 185 (469)
Q Consensus 120 k~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I-------~~~svI~Lv~rks 185 (469)
.++-++.+.+.||.+||++|+.....| +++|+|+-.+..|+|.+||+||++ ++.+++-|.+|+.
T Consensus 12 TTiF~dakes~tVlelK~~iegI~k~p--p~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~~ 82 (119)
T cd01788 12 TTIFTDAKESTTVYELKRIVEGILKRP--PEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRSS 82 (119)
T ss_pred eEEEeecCCcccHHHHHHHHHHHhcCC--hhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEecC
Confidence 355688999999999999999999988 999999987888999999999999 7799999988854
No 84
>KOG3829 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=2.8e-06 Score=87.55 Aligned_cols=168 Identities=24% Similarity=0.281 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHcCCCCc-cccCCCCcEE---EEEeCCCCeEEEEEecCC----CCCCCcCCCCCCCCCCCCCCccCCCcC
Q 012177 257 RLISSTVDGLERGNEPI-PSSEGSGGAY---FMQDSSGQKYISVFKPMD----EEPMSVNNPRGLPISVDGEGLKKGTRA 328 (469)
Q Consensus 257 ~~~~~~~~~~~~g~~p~-~~~~gs~g~y---~~~~~~g~~~~~vfKP~d----eEp~~~~nP~g~~~~~~~~~~~~~~~~ 328 (469)
.++..+..++.. .|+ .+..+-+||- .++-+.++ -|||||+. ||-.. + .| -||-|
T Consensus 151 ~~~~alL~~l~~--~pI~~v~v~~~GtqLKlll~~~~~~--KavfKPmR~~Rd~~~~~-~---yf------s~~dR---- 212 (486)
T KOG3829|consen 151 QSMGALLHALRT--EPITRVSVLGRGTQLKLLLRLSHQQ--KVVFKPMRYPRDEVIDG-M---YY------SGFDR---- 212 (486)
T ss_pred hhHHHHHHHhhc--CcceEEeecCCceEEEEEEEecCCc--eeeeccccCCccccCCC-c---cc------ccccc----
Confidence 566666677654 466 4556666664 34445553 69999983 32221 1 11 12222
Q ss_pred CCcchhheeeeecccCCCCcccccccccCCCCCCCeEEEE--ecc-----------ccccCCCC-------CC-------
Q 012177 329 GEGALREVAAYILDHPRDATYSLHDEERGFAGVPPTVMVR--CLH-----------KGFNHPNG-------YK------- 381 (469)
Q Consensus 329 g~~~~rEvaAylld~~~~~~~~~~~~~~g~~~VP~T~~v~--~~~-----------~~f~~~~~-------~~------- 381 (469)
---||||+=||+ .|||..+|||+=+- ++- .+|+.+.+ ++
T Consensus 213 ---HnAEiAAFHLDR-----------iL~FrRappvVGRvvNlttEI~~~a~~~LlqtfFvsp~~N~CF~gKC~YyC~t~ 278 (486)
T KOG3829|consen 213 ---HNAEVAAFHLDR-----------VLDFRRAPPVVGRVVNLTTEIYEKAEEELLQTFFVSPAENYCFFGKCDYYCDTE 278 (486)
T ss_pred ---cchhhhhhhhhh-----------hhcccccCcccceeeeeehHHHHhhHHHHHhheeeccCcceEEeeccccccCCc
Confidence 356999999994 89999999996432 211 24544432 11
Q ss_pred ---CCCCCccceeEeeeecCcCCccc-CCC----C--------CC--------------C------hhhhhheeeecEEE
Q 012177 382 ---HDLENVKIGSLQMFVENVGSCEE-MGP----R--------AF--------------P------VDEVHKISVLDIRL 425 (469)
Q Consensus 382 ---~~~~~~k~GSlQ~fv~~~~~~~~-~~~----~--------~f--------------~------~~ev~ki~ilD~~~ 425 (469)
+..+..+.||+|.|+++...... ..+ + .. | .-++=.||||||+|
T Consensus 279 ~avCg~pdmlEGS~~~fLP~~~~~prk~~r~Pw~RtY~~~k~a~WE~d~~YCd~VK~~~pY~~g~RLlDliD~aIfDyLi 358 (486)
T KOG3829|consen 279 EAVCGDPDMLEGSLIAFLPDESTLPRKHRRSPWRRTYKKDKKAEWEDDMNYCDKVKSIKPYDEGRRLLDLIDMAIFDYLI 358 (486)
T ss_pred ccccCCcccccceEEEEcCCcccccccccCCccccccccccccccccchHHHHHhcccCccccchhHHHHHHHHHHHHHh
Confidence 22558899999999998443311 000 0 00 0 11577899999999
Q ss_pred ecCCCCCCcEEEecCCCCceEEEeeecCCccCC
Q 012177 426 ANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPY 458 (469)
Q Consensus 426 ~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p~ 458 (469)
.|+|||-=--.-.. + +.-.++-+|||-+|-.
T Consensus 359 GN~DRHHYEtF~~f-~-d~s~~ihLDngr~FGr 389 (486)
T KOG3829|consen 359 GNMDRHHYETFEVF-G-DLSFLIHLDNGRAFGR 389 (486)
T ss_pred cccchhhhhhhhcc-C-CcceEEEeccccccCC
Confidence 99999954222111 2 3355899999998864
No 85
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=2.2e-06 Score=96.69 Aligned_cols=74 Identities=22% Similarity=0.286 Sum_probs=69.5
Q ss_pred eeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCCc
Q 012177 111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAK 187 (469)
Q Consensus 111 ~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks~k 187 (469)
.+.|||++.++.++.|...+||.++|..|.++.+|+ .+.|||+|.|++|.|.+++.+|+| +|.+|||+-|.+..
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~--s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~ 77 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIP--SEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQ 77 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccc--cccceeeecceeeccchhhhhccC-CCeEEEeeccCCCC
Confidence 378999999999999999999999999999999998 999999999999999999999999 99999999775443
No 86
>PLN02560 enoyl-CoA reductase
Probab=98.18 E-value=3.2e-06 Score=86.20 Aligned_cols=68 Identities=26% Similarity=0.492 Sum_probs=58.6
Q ss_pred EEEEE-EeCCeEE---EEEeCCCCcHHHHHHHHHHHhCC-CCcceEEEEc---Ce----ecccCCccccccCccCcccee
Q 012177 34 ILIFL-SVGGSVI---PMRVMESDSIASVKLRIQSYNGF-FVKKQKLVFE---GR----ELARSNSRVRDYGLADGNVLH 101 (469)
Q Consensus 34 M~I~V-~l~G~~~---~l~V~~sdTV~~LK~kIq~~~Gi-p~~~QrLvf~---Gk----~L~~D~~tL~dygI~~gstl~ 101 (469)
|+|+| ..+|+.+ ++++.++.||++||.+|+++.++ ++++|||.+. |+ .|. |+.+|++||++++++++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~-d~ktL~d~gv~~gstLy 79 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLD-DSKSLKDYGLGDGGTVV 79 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccC-CCCCHHhcCCCCCceEE
Confidence 78888 6678876 89999999999999999999986 8999999983 43 676 88899999999999866
Q ss_pred e
Q 012177 102 L 102 (469)
Q Consensus 102 L 102 (469)
+
T Consensus 80 ~ 80 (308)
T PLN02560 80 F 80 (308)
T ss_pred E
Confidence 4
No 87
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=2.3e-06 Score=96.42 Aligned_cols=70 Identities=26% Similarity=0.478 Sum_probs=67.0
Q ss_pred EEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecc
Q 012177 36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (469)
Q Consensus 36 I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (469)
|.| |++.++.++.|...+||.++|..|.++.+|+.++|||+|+|+.|. |++++++|+| +|.+|||+-|..
T Consensus 5 v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~-~~k~vq~~~v-dgk~~hlverpp 75 (1143)
T KOG4248|consen 5 VLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQ-DDKKVQEYNV-DGKVIHLVERPP 75 (1143)
T ss_pred eeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeec-cchhhhhccC-CCeEEEeeccCC
Confidence 778 899999999999999999999999999999999999999999998 8999999999 999999999853
No 88
>PLN02560 enoyl-CoA reductase
Probab=98.14 E-value=4.5e-06 Score=85.13 Aligned_cols=70 Identities=20% Similarity=0.324 Sum_probs=61.1
Q ss_pred ceeeeeeecceeE---EEEeecCchHHHHHHHHHHhcCCCCCCCceEEEEC---C----EEcCCCCcccccCCCCCCEEE
Q 012177 110 QAITVTTVCGKVF---EFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD---G----EELEDQRLITDICKRNEAVIH 179 (469)
Q Consensus 110 m~I~Vkt~~Gk~~---~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~---G----k~LeD~~tL~dy~I~~~svI~ 179 (469)
|.|.|++.+|+.+ +++++++.||++||++|+++.++. ++++|||.+. | +.|+|+++|.||+++++++|+
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~-~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy 79 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKY-YPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVV 79 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCC-ChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEE
Confidence 6788888888887 799999999999999999998862 2899999983 3 478999999999999999988
Q ss_pred E
Q 012177 180 L 180 (469)
Q Consensus 180 L 180 (469)
+
T Consensus 80 ~ 80 (308)
T PLN02560 80 F 80 (308)
T ss_pred E
Confidence 6
No 89
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.07 E-value=1.2e-05 Score=64.48 Aligned_cols=71 Identities=25% Similarity=0.308 Sum_probs=60.6
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEc----CeecccCCccccccCccCccceeeeee
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE----GRELARSNSRVRDYGLADGNVLHLVLR 105 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~----Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (469)
++|+| ...+..+++.|+|..+|..+|++|+...|++- .|||.|+ .++|.++..+|++|||..+..|-|...
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT 76 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET 76 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence 57888 66678899999999999999999999999985 9999996 345555899999999998887776544
No 90
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.01 E-value=1.7e-05 Score=65.95 Aligned_cols=72 Identities=18% Similarity=0.198 Sum_probs=55.9
Q ss_pred eeeeeeecc--eeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEEC----C---EEc-CCCCcccccCCCCCCEEEE
Q 012177 111 AITVTTVCG--KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD----G---EEL-EDQRLITDICKRNEAVIHL 180 (469)
Q Consensus 111 ~I~Vkt~~G--k~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~----G---k~L-eD~~tL~dy~I~~~svI~L 180 (469)
.|+|..... +.....+.++.||.+||++|+...|++ ++.|+|.+. + ..| +|.++|.+|++++|.+||+
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~--~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V 80 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIP--PSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHV 80 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS---TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCC--cccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEE
Confidence 344544333 477899999999999999999999998 999999985 1 224 5799999999999999998
Q ss_pred EEee
Q 012177 181 LVRK 184 (469)
Q Consensus 181 v~rk 184 (469)
.-..
T Consensus 81 ~D~~ 84 (87)
T PF14560_consen 81 VDTN 84 (87)
T ss_dssp EE-T
T ss_pred EeCC
Confidence 6543
No 91
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=97.98 E-value=3.9e-05 Score=66.99 Aligned_cols=74 Identities=30% Similarity=0.417 Sum_probs=54.9
Q ss_pred CEEEEE-EeCCe-EEEEEeCCCCcHHHHHHHHHHHh-------CCCCcceEEEEcCeecccCCccccccCccCcc-----
Q 012177 33 SILIFL-SVGGS-VIPMRVMESDSIASVKLRIQSYN-------GFFVKKQKLVFEGRELARSNSRVRDYGLADGN----- 98 (469)
Q Consensus 33 ~M~I~V-~l~G~-~~~l~V~~sdTV~~LK~kIq~~~-------Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gs----- 98 (469)
.+.|.. ..+|. +.++..++++||++||++|.... -..+...||+|.||.|+ |+.+|+++.+..+.
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~-d~~tL~~~~~~~~~~~~~~ 80 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILE-DNKTLSDCRLPSGETPGGP 80 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE--SSSBTGGGT--TTSETT--
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecC-CcCcHHHhCCCCCCCCCCC
Confidence 456666 55888 99999999999999999999753 12345679999999998 99999999987655
Q ss_pred -ceeeeeecc
Q 012177 99 -VLHLVLRLS 107 (469)
Q Consensus 99 -tl~LvlrLs 107 (469)
++||+++..
T Consensus 81 ~vmHlvvrp~ 90 (111)
T PF13881_consen 81 TVMHLVVRPN 90 (111)
T ss_dssp EEEEEEE-SS
T ss_pred EEEEEEecCC
Confidence 688888764
No 92
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.85 E-value=7.6e-05 Score=54.49 Aligned_cols=64 Identities=27% Similarity=0.296 Sum_probs=58.1
Q ss_pred ecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 012177 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (469)
Q Consensus 117 ~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~ 182 (469)
.+|....+.+.+..|+++||++|+++.+.+ ++.+.|+++|..+++...+.+|++.++++|++..
T Consensus 5 ~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 5 NDGKTVELLVPSGTTVADLKEKLAKKLGLP--PEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHHHHCcC--hHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 367888899999999999999999999966 9999999999999999888899999999999853
No 93
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.77 E-value=5.1e-05 Score=62.45 Aligned_cols=73 Identities=19% Similarity=0.275 Sum_probs=45.1
Q ss_pred CCCEEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEc---Ceec-ccCCccccccCccCccceeee
Q 012177 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE---GREL-ARSNSRVRDYGLADGNVLHLV 103 (469)
Q Consensus 31 ~~~M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~---Gk~L-~~D~~tL~dygI~~gstl~Lv 103 (469)
.++|.|.|....-+..+++++++|+.+||++|++..+++...|.|+.+ ..+| ..++.+|+++||+.|+.|.|.
T Consensus 2 ~~~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 2 ASSMILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ----EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred CccEEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 357889996666788999999999999999999999999999999753 3345 346899999999999998764
No 94
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.72 E-value=0.00012 Score=53.32 Aligned_cols=63 Identities=29% Similarity=0.494 Sum_probs=57.1
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeee
Q 012177 41 GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (469)
Q Consensus 41 ~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (469)
.+....+.+.++.|+.+||.+|.++.|+++..|.|+++|..+. +...+.+|++.+++++++..
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILP-DSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEe
Confidence 4778889999999999999999999999999999999999998 67777899999999998764
No 95
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=97.68 E-value=0.0001 Score=59.85 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=46.4
Q ss_pred ecCchHHHHHHHHHHhcCCCCCCCceEEE--ECCEEcCCCCcccccCCCCCCEEEE
Q 012177 127 ERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELEDQRLITDICKRNEAVIHL 180 (469)
Q Consensus 127 ~~~~TV~~LK~kI~~~~gip~~~e~QrLi--f~Gk~LeD~~tL~dy~I~~~svI~L 180 (469)
.++.||.+||+.|++..+.. ++++|+|. +.|+.|.|..+|.+|++.++++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~-~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQL-TVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCC-CcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 47789999999999987642 38999996 7999999999999999999999886
No 96
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=97.65 E-value=0.0001 Score=59.86 Aligned_cols=55 Identities=25% Similarity=0.397 Sum_probs=46.7
Q ss_pred EEe-CCCCcHHHHHHHHHHHhC-CCCcceEEE--EcCeecccCCccccccCccCccceee
Q 012177 47 MRV-MESDSIASVKLRIQSYNG-FFVKKQKLV--FEGRELARSNSRVRDYGLADGNVLHL 102 (469)
Q Consensus 47 l~V-~~sdTV~~LK~kIq~~~G-ip~~~QrLv--f~Gk~L~~D~~tL~dygI~~gstl~L 102 (469)
+++ .++.||.+||..|++..+ +++++|+|. +.|+.|. |+.+|.+||+.++++|++
T Consensus 16 ~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~-d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 16 LKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLK-DDDTLVDLGVGAGATLYV 74 (77)
T ss_pred cccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccC-CcccHhhcCCCCCCEEEE
Confidence 444 478899999999999875 578999996 7899998 888999999999998764
No 97
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.50 E-value=0.00012 Score=60.29 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=43.3
Q ss_pred ccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEE---CCEEc--CCCCcccccCCCCCCEEEE
Q 012177 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---DGEEL--EDQRLITDICKRNEAVIHL 180 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif---~Gk~L--eD~~tL~dy~I~~~svI~L 180 (469)
+.|-|-||+.+|- ..+++++++|+.+||++|++..+++ .+.|.|+. ...+| .+.++|++++++.|+.|+|
T Consensus 3 ~~milRvrS~dG~-~Rie~~~~~t~~~L~~kI~~~l~~~--~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL 77 (80)
T PF11543_consen 3 SSMILRVRSKDGM-KRIEVSPSSTLSDLKEKISEQLSIP--DSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYL 77 (80)
T ss_dssp ---EEEEE-SSEE-EEEEE-TTSBHHHHHHHHHHHS-----TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE-
T ss_pred ccEEEEEECCCCC-EEEEcCCcccHHHHHHHHHHHcCCC--CcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEE
Confidence 4567778887765 6789999999999999999999987 77888864 22345 4689999999999999987
No 98
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.36 E-value=0.00072 Score=54.46 Aligned_cols=71 Identities=20% Similarity=0.156 Sum_probs=60.5
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEE---CCE--EcCCCCcccccCCCCCCEEEEEEe
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---DGE--ELEDQRLITDICKRNEAVIHLLVR 183 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif---~Gk--~LeD~~tL~dy~I~~~svI~Lv~r 183 (469)
++++|+...+..+++.|+|..+|..+|++|....+.+ ..|||.| +|+ .|.+..+|++|+|=.+..|.|+-.
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~---g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT 76 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCS---GLQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET 76 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCcc---cceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence 3678888888899999999999999999999999976 6999999 333 378999999999987777777543
No 99
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00036 Score=70.14 Aligned_cols=66 Identities=14% Similarity=0.227 Sum_probs=58.8
Q ss_pred ceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012177 119 GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (469)
Q Consensus 119 Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks~ 186 (469)
...++++|+.+.+|.+||+.+++..|+| +++.+++|.|++|.|..++..+.+...+++|+++-+++
T Consensus 13 ~h~l~v~v~~~t~I~~lke~Vak~~gvp--~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP~ 78 (446)
T KOG0006|consen 13 SHGLPVEVDSDTSIFQLKEVVAKRQGVP--ADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRPW 78 (446)
T ss_pred cCceeEEEecCCCHHHHHHHHHHhhCCC--hhheEEEEeccccccCceeecccccccchhhhhccCcc
Confidence 3467799999999999999999999998 99999999999999999999888888899998855444
No 100
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00069 Score=68.21 Aligned_cols=69 Identities=20% Similarity=0.474 Sum_probs=60.0
Q ss_pred EEEEEEeC--C--eEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeee
Q 012177 34 ILIFLSVG--G--SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (469)
Q Consensus 34 M~I~V~l~--G--~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lv 103 (469)
|.++|.+. | ..++++|+.+.+|.+||+-++.+.|+|+++.+++|.|++|+ |+.+++.+.+..-+.+|.+
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs-~~ttv~~cDL~qqs~~hi~ 73 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELS-NDTTVQNCDLSQQSATHIM 73 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccc-cCceeecccccccchhhhh
Confidence 55666443 2 45888999999999999999999999999999999999998 8999998888888888876
No 101
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=96.73 E-value=0.0025 Score=53.73 Aligned_cols=61 Identities=16% Similarity=0.205 Sum_probs=51.1
Q ss_pred EEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEE-cCeecccCCccccccCcc
Q 012177 35 LIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF-EGRELARSNSRVRDYGLA 95 (469)
Q Consensus 35 ~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf-~Gk~L~~D~~tL~dygI~ 95 (469)
-|.|.....++.++..++.||-+||.+++....-|++.|+|+. ...+|.+|..+|+|+|..
T Consensus 4 f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 4 FLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred eeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence 3444666788999999999999999999999999999999997 553555599999999753
No 102
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.00074 Score=52.87 Aligned_cols=68 Identities=22% Similarity=0.211 Sum_probs=58.4
Q ss_pred EEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeee
Q 012177 35 LIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (469)
Q Consensus 35 ~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lv 103 (469)
++.+ ..-|+...+...++|||.++|..|++++|..+++..|---+.... |.-+|++|.|.+|-.+.|.
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~k-d~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFK-DHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhh-cccceeeEEeccCccEEEe
Confidence 4455 556889999999999999999999999999999888875566676 8999999999999888764
No 103
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.0018 Score=50.71 Aligned_cols=68 Identities=15% Similarity=0.120 Sum_probs=57.8
Q ss_pred eeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEE
Q 012177 111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL 180 (469)
Q Consensus 111 ~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~L 180 (469)
.+.++..-|+...+.+.+.+||+++|+.|+...|.. ++...|---+..+.|+-+|+||.|.++-.+.|
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~--~~kivl~k~~~i~kd~I~L~dyeihdg~~lel 70 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTR--PEKIVLKKWYTIFKDHITLSDYEIHDGMNLEL 70 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCC--hhHhHHHhhhhhhhcccceeeEEeccCccEEE
Confidence 344555669999999999999999999999999977 77777776677789999999999998877765
No 104
>PF07804 HipA_C: HipA-like C-terminal domain; InterPro: IPR012893 The members of this entry are similar to a region close to the C terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 3AKL_D 3AKJ_B 3AKK_D 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=96.02 E-value=0.0015 Score=53.16 Aligned_cols=38 Identities=37% Similarity=0.538 Sum_probs=28.7
Q ss_pred hhhhhheeeecEEEecCCCCCCcEEEecCCCCceEEEee
Q 012177 412 VDEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPI 450 (469)
Q Consensus 412 ~~ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~I 450 (469)
+.|+-++.+|+++|.|+|||.+||=+-.+ ++.++|.|+
T Consensus 40 ~~~l~~~~~fn~ligN~D~H~kN~s~l~~-~~~~~LaP~ 77 (79)
T PF07804_consen 40 VRELFRRLVFNYLIGNTDRHLKNFSFLYD-GGGWRLAPA 77 (79)
T ss_dssp HHHHHHHHHHHHHCTBS---CCCSEEEEE-CCEEEE--B
T ss_pred HHHHHHHHHHHHHHcCCcCCcCCEEEEEc-CCeEEecCC
Confidence 56888999999999999999999988775 577889886
No 105
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=95.95 E-value=0.012 Score=49.71 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=44.5
Q ss_pred ceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEE-CC-EEcCCCCcccccCC
Q 012177 119 GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC-DG-EELEDQRLITDICK 172 (469)
Q Consensus 119 Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif-~G-k~LeD~~tL~dy~I 172 (469)
..++.++.+++.||-+||++++....-| ++.|+|+. .. +.|+|.++|+|++.
T Consensus 11 kttif~da~es~tV~elK~~l~gi~~~P--vn~qrL~kmd~eqlL~D~ktL~d~gf 64 (110)
T KOG4495|consen 11 KTTIFTDAKESSTVFELKRKLEGILKRP--VNEQRLYKMDTEQLLDDGKTLGDCGF 64 (110)
T ss_pred ceeEEeecCccccHHHHHHHHHHHHhCC--CcchheeecCHHHHhhccchhhhccc
Confidence 3456688999999999999999999887 99999997 44 56899999999953
No 106
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.014 Score=62.06 Aligned_cols=71 Identities=13% Similarity=0.236 Sum_probs=63.7
Q ss_pred EEEEEeCCeEEEEE-eCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeec
Q 012177 35 LIFLSVGGSVIPMR-VMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (469)
Q Consensus 35 ~I~V~l~G~~~~l~-V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (469)
.|.|.-.|+.++++ ++.++|+..+|.++...+|++++.|++...|..+. |+..+...+|+++.+++|+-..
T Consensus 5 ~v~VKW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~-dd~~~~al~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 5 TVIVKWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAK-DDVDWGALQIKPNETLMMMGTA 76 (473)
T ss_pred eEeeeecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEeccccc-ccccccccccCCCCEEEeeccc
Confidence 35557788999998 89999999999999999999999999999999998 7778888999999999987654
No 107
>PF06702 DUF1193: Protein of unknown function (DUF1193); InterPro: IPR009581 This family is baesd on the C terminus of several hypothetical eukaryotic proteins of unknown function. Proteins in this entry contain two conserved motifs: DRHHYE and QCC, as well as a number of conserved cysteine residues.
Probab=95.31 E-value=0.0095 Score=57.87 Aligned_cols=42 Identities=19% Similarity=0.292 Sum_probs=32.8
Q ss_pred hhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccC
Q 012177 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLP 457 (469)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p 457 (469)
++=-++|||++|.|+|||.-|..-+. .++ .-++-+|||-.|-
T Consensus 91 dliDm~IFDFLigN~DRhhye~f~~f-gn~-~~l~~LDNgrgFG 132 (221)
T PF06702_consen 91 DLIDMAIFDFLIGNMDRHHYETFNKF-GNE-GFLLHLDNGRGFG 132 (221)
T ss_pred HHHHHHHHHHHhcCCcchhhhhhhcc-CCC-ceEEEEeCCcccC
Confidence 56679999999999999999966332 222 3489999999883
No 108
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.14 Score=43.67 Aligned_cols=75 Identities=12% Similarity=0.232 Sum_probs=65.8
Q ss_pred cceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012177 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (469)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks 185 (469)
-+.+.|+--++.++.+.|.++.....|...-+++.|+. ....|++|+|+.+.+.+|-++...+++++|.++..+.
T Consensus 20 hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~--~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~ 94 (99)
T KOG1769|consen 20 HINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLS--MNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQT 94 (99)
T ss_pred eEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCc--cceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecc
Confidence 34555666677888899999999999999999999988 8999999999999999999999999999999875543
No 109
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=95.09 E-value=0.071 Score=42.26 Aligned_cols=63 Identities=14% Similarity=0.075 Sum_probs=46.1
Q ss_pred EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceee
Q 012177 39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHL 102 (469)
Q Consensus 39 ~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~L 102 (469)
..+++...+.|.|+.++.++-+...++.|+.+.+-.|.++++.|. -..+++-.|+.+|+.+.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ld-lslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLD-LSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEES-SS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEec-cccceeecCCCCCCEEeC
Confidence 457889999999999999999999999999999999999999997 889999999999998865
No 110
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=94.84 E-value=0.096 Score=48.68 Aligned_cols=76 Identities=18% Similarity=0.216 Sum_probs=55.7
Q ss_pred EEEEE-EeCC----eEEEEEeCCCCcHHHHHHHHHHHhCCCCcce-EEEE-cCeecc-cCCccccccCccCc----ccee
Q 012177 34 ILIFL-SVGG----SVIPMRVMESDSIASVKLRIQSYNGFFVKKQ-KLVF-EGRELA-RSNSRVRDYGLADG----NVLH 101 (469)
Q Consensus 34 M~I~V-~l~G----~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~Q-rLvf-~Gk~L~-~D~~tL~dygI~~g----stl~ 101 (469)
|+|+| +++| .++.+.+.++.||.+|+.+|....+++...| .|++ .++.|. .++..+..+.-.+. .+++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 68999 8888 6899999999999999999999999998885 4555 355653 24555665544333 3566
Q ss_pred eeeecccc
Q 012177 102 LVLRLSDL 109 (469)
Q Consensus 102 LvlrLsd~ 109 (469)
|.+++.++
T Consensus 81 l~~rl~GG 88 (162)
T PF13019_consen 81 LSLRLRGG 88 (162)
T ss_pred EEEeccCC
Confidence 77776543
No 111
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.058 Score=57.38 Aligned_cols=72 Identities=13% Similarity=0.126 Sum_probs=63.6
Q ss_pred eeeeeecceeEEEE-eecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012177 112 ITVTTVCGKVFEFH-VERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (469)
Q Consensus 112 I~Vkt~~Gk~~~l~-V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks~ 186 (469)
|.|| -.|+.+.++ ++.++|+..+|+++....|++ |++|++.+.|..+.|+-.+....|+++.+|+|+-...+
T Consensus 6 v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~--PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e~ 78 (473)
T KOG1872|consen 6 VIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVP--PERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAEA 78 (473)
T ss_pred Eeee-ecCccccceeccCCCchHHHHHHHHHhcCCC--ccceeEEEecccccccccccccccCCCCEEEeeccccc
Confidence 4444 568888887 999999999999999999988 99999999999999998888889999999999876554
No 112
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.63 E-value=0.22 Score=42.57 Aligned_cols=77 Identities=14% Similarity=0.339 Sum_probs=67.5
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeeccc
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (469)
++.+.+.| ...+.+..+.|.-+.+...|+..-+++.|+.....|+.|+|+.+. ...|-.+.+..+++.|.++....+
T Consensus 18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~-~~~TP~~L~mEd~D~Iev~~~q~g 95 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIR-ETHTPADLEMEDGDEIEVVQEQTG 95 (99)
T ss_pred cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcC-CCCChhhhCCcCCcEEEEEeeccc
Confidence 45666667 566788999999999999999999999999999999999999997 889999999999999988765443
No 113
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=94.57 E-value=0.073 Score=45.49 Aligned_cols=50 Identities=18% Similarity=0.223 Sum_probs=39.6
Q ss_pred eEEEEee--cCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCccccc
Q 012177 121 VFEFHVE--RGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDI 170 (469)
Q Consensus 121 ~~~l~V~--~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy 170 (469)
.+.+++. .+.||..||++|.+...-...-..+||+|+|+.|.|...|...
T Consensus 13 Dl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 13 DLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred CceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 3666666 7889999999999998422236789999999999998777653
No 114
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=94.32 E-value=0.11 Score=42.26 Aligned_cols=72 Identities=17% Similarity=0.146 Sum_probs=49.7
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCC-CCC---ceEEE-ECCEEcCCCCcccccCCCCCCEEEEE
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFV-DLK---NQELI-CDGEELEDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~-~~e---~QrLi-f~Gk~LeD~~tL~dy~I~~~svI~Lv 181 (469)
.+|+|...+|+.+-+.+....+|+.|...|.+..+.+. +.. ..+|. -+|..|.++++|++++|.+|+++.|.
T Consensus 3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L~ 79 (79)
T PF08817_consen 3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVLR 79 (79)
T ss_dssp EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE-
T ss_pred EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEeC
Confidence 35666655568888999999999999999999887531 122 34566 68999999999999999999999873
No 115
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=94.08 E-value=0.13 Score=41.86 Aligned_cols=68 Identities=22% Similarity=0.325 Sum_probs=47.7
Q ss_pred EEEEEEeC-CeEEEEEeCCCCcHHHHHHHHHHHhCCCCcc------eEEE-EcCeecccCCccccccCccCccceee
Q 012177 34 ILIFLSVG-GSVIPMRVMESDSIASVKLRIQSYNGFFVKK------QKLV-FEGRELARSNSRVRDYGLADGNVLHL 102 (469)
Q Consensus 34 M~I~V~l~-G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~------QrLv-f~Gk~L~~D~~tL~dygI~~gstl~L 102 (469)
++|+|... |+.+.+.+..+.+|++|...|.+..+.+... -+|. -.|..|. ++.+|.++||.+|+++.|
T Consensus 3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~-~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLD-PDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEE-TTSBCGGGT--TT-EEEE
T ss_pred EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccC-CcCcHhHcCCCCCCEEEe
Confidence 56677444 5899999999999999999999988764333 2344 5689997 899999999999999876
No 116
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=94.00 E-value=0.18 Score=40.00 Aligned_cols=62 Identities=16% Similarity=0.041 Sum_probs=45.8
Q ss_pred ecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEE
Q 012177 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL 180 (469)
Q Consensus 117 ~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~L 180 (469)
.+++.+++.+.++.++.++-+...+++++. +++-.|.|+++.|+-...+.-.++.+++.+.|
T Consensus 4 ~~~rr~~vkvtp~~~l~~VL~eac~k~~l~--~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 4 YNFRRFKVKVTPNTTLNQVLEEACKKFGLD--PSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp TTS-EEEE---TTSBHHHHHHHHHHHTT----GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred cCCcEEEEEECCCCCHHHHHHHHHHHcCCC--ccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 568899999999999999999999999987 78999999999999888888888999998865
No 117
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=93.66 E-value=0.38 Score=39.01 Aligned_cols=72 Identities=22% Similarity=0.239 Sum_probs=59.4
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcc-eEEE--EcCeecccCC-ccccccCccCccceee
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKK-QKLV--FEGRELARSN-SRVRDYGLADGNVLHL 102 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~-QrLv--f~Gk~L~~D~-~tL~dygI~~gstl~L 102 (469)
.+...|-| ..+|+.+......++||.+|..-|......+... -.|+ |-.+.+..++ .+|++.|+...++|++
T Consensus 4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 45677888 5578999999999999999999999987777654 5665 6688888655 7999999999998876
No 118
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=93.46 E-value=0.04 Score=55.99 Aligned_cols=41 Identities=39% Similarity=0.618 Sum_probs=34.7
Q ss_pred hhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccCC
Q 012177 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPY 458 (469)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p~ 458 (469)
-+.-.+|.=|++.=.|||.||||+..+ |+ ++.||-|++|-.
T Consensus 130 SlA~ySvv~YiLgigDRH~~NILid~~--G~--liHIDFG~ilg~ 170 (289)
T cd00893 130 SMAGYSLLCYLLQIKDRHNGNILLDSD--GH--IIHIDFGFILDS 170 (289)
T ss_pred HHHHHHHHHHHhhccccCCCceEECCC--CC--EEEEehHHhhCc
Confidence 355567788899999999999999864 77 999999999965
No 119
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=93.42 E-value=0.41 Score=38.79 Aligned_cols=71 Identities=15% Similarity=0.131 Sum_probs=57.4
Q ss_pred ccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCc-eEEE--ECCEEcCCC--CcccccCCCCCCEEEE
Q 012177 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKN-QELI--CDGEELEDQ--RLITDICKRNEAVIHL 180 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~-QrLi--f~Gk~LeD~--~tL~dy~I~~~svI~L 180 (469)
+...|.||..+|+.+.-....++||.+|.+-|......+ ... -.|+ |--+.+.+. ++|.|.++...++|++
T Consensus 5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~--~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSP--EESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCT--TTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCC--CCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 345678888889999999999999999999998887655 332 5665 677888654 6999999999999886
No 120
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.35 E-value=0.1 Score=50.26 Aligned_cols=63 Identities=14% Similarity=0.251 Sum_probs=57.0
Q ss_pred EEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCcccee
Q 012177 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101 (469)
Q Consensus 38 V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~ 101 (469)
++.+++.+.+.+...||+.++|.+++++.|+.+..|+++|+|..|- +...|..++|..+....
T Consensus 152 lTtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~-dkt~LeEc~iekg~rYv 214 (231)
T KOG0013|consen 152 LTTTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLV-DKTDLEECKIEKGQRYV 214 (231)
T ss_pred hhhhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCcee-ccccceeeeecCCCEEE
Confidence 3556788999999999999999999999999999999999999998 89999999999996444
No 121
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=93.31 E-value=0.18 Score=43.11 Aligned_cols=46 Identities=17% Similarity=0.345 Sum_probs=36.5
Q ss_pred EEEEeC--CCCcHHHHHHHHHHHhC--CCCcceEEEEcCeecccCCccccc
Q 012177 45 IPMRVM--ESDSIASVKLRIQSYNG--FFVKKQKLVFEGRELARSNSRVRD 91 (469)
Q Consensus 45 ~~l~V~--~sdTV~~LK~kIq~~~G--ip~~~QrLvf~Gk~L~~D~~tL~d 91 (469)
++++|. .+.||..||..|.+... ..-..+||+|+|+.|. |+..|..
T Consensus 14 l~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~-d~t~l~~ 63 (97)
T PF10302_consen 14 LPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLN-DHTDLSS 63 (97)
T ss_pred ceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccC-ccchhhh
Confidence 666776 78999999999999973 3445579999999998 6666554
No 122
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=92.74 E-value=0.24 Score=47.62 Aligned_cols=70 Identities=19% Similarity=0.322 Sum_probs=54.7
Q ss_pred EEEEEEeCCeE--EEEEeCCCCcHHHHHHHHHHHhCCCCcceEEE-EcC-----eecccCCccccccCccCccceeee
Q 012177 34 ILIFLSVGGSV--IPMRVMESDSIASVKLRIQSYNGFFVKKQKLV-FEG-----RELARSNSRVRDYGLADGNVLHLV 103 (469)
Q Consensus 34 M~I~V~l~G~~--~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv-f~G-----k~L~~D~~tL~dygI~~gstl~Lv 103 (469)
+.++|+.+-.. ..-+..++.||+++|.|++...|.++....|. |.| -.|++++..|..|+..+|-.||++
T Consensus 2 v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihvi 79 (234)
T KOG3206|consen 2 VRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVI 79 (234)
T ss_pred eEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEE
Confidence 45666333223 44456789999999999999999999999986 544 468878899999999999888865
No 123
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=92.48 E-value=0.067 Score=55.82 Aligned_cols=40 Identities=30% Similarity=0.473 Sum_probs=34.3
Q ss_pred hhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccC
Q 012177 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLP 457 (469)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p 457 (469)
.+.-.+|.=|++.=.|||.||||+..+ |+ ++.||-|++|-
T Consensus 194 S~AgysvvtYiLGigDRHn~NILi~~~--G~--~~HIDFG~ilg 233 (354)
T cd05177 194 SCAGWCVVTFILGVCDRHNDNIMLTHS--GH--MFHIDFGKFLG 233 (354)
T ss_pred HHHHHHHHHHHhcccCcCCCceeEcCC--CC--EEEEehHHhcC
Confidence 355677888999999999999999765 77 99999999994
No 124
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.40 E-value=0.26 Score=47.44 Aligned_cols=61 Identities=15% Similarity=0.088 Sum_probs=55.0
Q ss_pred cceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEE
Q 012177 118 CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL 180 (469)
Q Consensus 118 ~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~L 180 (469)
+++.+.+.+...+||.++|.+++.+.++. +-.|+++|+|..|-|..-|..+.|++++.-.+
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D--~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvl 215 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVD--PLSQRIFFSGGVLVDKTDLEECKIEKGQRYVL 215 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccc--hhhheeeccCCceeccccceeeeecCCCEEEE
Confidence 57788899999999999999999999976 89999999999999999999999999954444
No 125
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=92.28 E-value=0.074 Score=54.14 Aligned_cols=41 Identities=37% Similarity=0.641 Sum_probs=34.9
Q ss_pred hhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccCC
Q 012177 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPY 458 (469)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p~ 458 (469)
-+.-.+|.=|++.=.|||.+|||+..+ |+ ++.||=|++|-.
T Consensus 132 S~A~ySvv~YvLGigDRH~~NILi~~~--G~--liHIDFG~~fg~ 172 (293)
T cd05168 132 SLAGYSLICYLLQIKDRHNGNILIDND--GH--IIHIDFGFMLSN 172 (293)
T ss_pred HHHHHHHHHHHhhccccCCCceEEcCC--CC--EEEEehHHhhcc
Confidence 355677788899999999999999875 77 999999999954
No 126
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=92.27 E-value=0.07 Score=55.92 Aligned_cols=40 Identities=38% Similarity=0.473 Sum_probs=34.1
Q ss_pred hhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccC
Q 012177 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLP 457 (469)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p 457 (469)
.+.-.+|.=|++.=.|||.||||+..+ |+ ++.||-|++|-
T Consensus 203 S~AgysvvtYiLGigDRH~~NILi~~~--G~--l~HIDFG~ilg 242 (366)
T cd05165 203 SCAGYCVATFVLGIGDRHNDNIMVKET--GQ--LFHIDFGHILG 242 (366)
T ss_pred HHHHHHHHHHHhhccccCCcceEEcCC--CC--EEEEehHHhhc
Confidence 345567888999999999999999864 77 99999999993
No 127
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=92.24 E-value=0.074 Score=55.61 Aligned_cols=40 Identities=35% Similarity=0.472 Sum_probs=33.8
Q ss_pred hhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccC
Q 012177 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLP 457 (469)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p 457 (469)
.+.-.+|.=|++.=.|||.||||+..+ |+ ++.||-|++|-
T Consensus 199 S~AgysVvtYiLGIGDRHn~NILi~~~--G~--l~HIDFG~ilg 238 (361)
T cd05174 199 SCAGYCVATYVLGIGDRHSDNIMIRES--GQ--LFHIDFGHFLG 238 (361)
T ss_pred HHHHHHHHHHHhcccCcCccceeEcCC--CC--EEEEehHHhhc
Confidence 345567788899999999999999764 77 99999999984
No 128
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=91.97 E-value=0.08 Score=55.38 Aligned_cols=41 Identities=39% Similarity=0.485 Sum_probs=34.6
Q ss_pred hhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccCC
Q 012177 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPY 458 (469)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p~ 458 (469)
.+.--+|.=|++.=.|||.||||+..+ |+ ++.||=|++|-.
T Consensus 202 S~AgYsV~tYiLGIgDRHndNImi~~~--G~--l~HIDFG~iLg~ 242 (366)
T cd05175 202 SCAGYCVATFILGIGDRHNSNIMVKDD--GQ--LFHIDFGHFLDH 242 (366)
T ss_pred HHHHHHHHHHHhcccccCccceeEcCC--CC--EEEEehHHhhcC
Confidence 355567788999999999999999875 77 999999999843
No 129
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=91.90 E-value=0.087 Score=54.09 Aligned_cols=40 Identities=33% Similarity=0.658 Sum_probs=33.9
Q ss_pred hhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccCC
Q 012177 415 VHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPY 458 (469)
Q Consensus 415 v~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p~ 458 (469)
+.--+|.=|++.=.|||.||||+..+ |+ ++.||=|++|-.
T Consensus 152 ~Agysv~tYiLgigDRHn~NILid~~--G~--l~HIDFG~il~~ 191 (311)
T cd05167 152 MAAYSLISYLLQIKDRHNGNIMIDDD--GH--IIHIDFGFIFEI 191 (311)
T ss_pred HHHHHHHHHHhhccccCccceEEcCC--CC--EEEEeeHHhhcc
Confidence 45566778888889999999999975 77 999999999943
No 130
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=91.74 E-value=0.096 Score=54.71 Aligned_cols=40 Identities=33% Similarity=0.460 Sum_probs=34.3
Q ss_pred hhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccC
Q 012177 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLP 457 (469)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p 457 (469)
-+.-.+|.=|++.=.|||.||||+.++ |+ ++-||-|++|-
T Consensus 193 S~A~ysvv~YiLgigDRH~~NILl~~~--G~--l~HIDFG~~lg 232 (353)
T cd05166 193 SCAGCCVATYVLGICDRHNDNIMLTKS--GH--MFHIDFGKFLG 232 (353)
T ss_pred HHHHHHHHHHHhhccccCCCceEECCC--CC--EEEEeeHHhcc
Confidence 355677888999999999999999864 77 99999999984
No 131
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=91.63 E-value=0.092 Score=54.95 Aligned_cols=40 Identities=40% Similarity=0.502 Sum_probs=33.8
Q ss_pred hhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccC
Q 012177 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLP 457 (469)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p 457 (469)
...-.+|.=|++.=.|||.||||+..+ |+ ++.||=|++|-
T Consensus 199 S~AgYsvvtYILGIGDRHn~NILi~~~--G~--l~HIDFG~ilg 238 (362)
T cd05173 199 SCAGYCVATYVLGIGDRHSDNIMVRKN--GQ--LFHIDFGHILG 238 (362)
T ss_pred HHHHHHHHHHHhhccccCCCceEECCC--CC--EEEEehHHhhc
Confidence 345567788889999999999999764 77 99999999984
No 132
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=91.43 E-value=0.095 Score=54.72 Aligned_cols=40 Identities=35% Similarity=0.463 Sum_probs=34.3
Q ss_pred hhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccC
Q 012177 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLP 457 (469)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p 457 (469)
-+.-.+|+=|++.=.|||.||||+..+ |+ ++.||-|++|-
T Consensus 194 S~A~ysv~~YiLgigDRH~~NILi~~~--G~--~~HIDFG~ilg 233 (352)
T cd00891 194 SCAGYCVATYVLGIGDRHNDNIMLTKT--GH--LFHIDFGHFLG 233 (352)
T ss_pred hHHHHHHHHHHccccccCCCceEECCC--CC--EEEEehHHhhc
Confidence 355677888999999999999999864 77 99999999983
No 133
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=91.26 E-value=0.8 Score=42.69 Aligned_cols=72 Identities=11% Similarity=0.175 Sum_probs=51.7
Q ss_pred ceeeeeeecc----eeEEEEeecCchHHHHHHHHHHhcCCCCCCCc-eEEEE-CCEEc--CCCCcccccCCCCC----CE
Q 012177 110 QAITVTTVCG----KVFEFHVERGRNVGYVKQQIAKKGREFVDLKN-QELIC-DGEEL--EDQRLITDICKRNE----AV 177 (469)
Q Consensus 110 m~I~Vkt~~G----k~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~-QrLif-~Gk~L--eD~~tL~dy~I~~~----sv 177 (469)
|+|+|.+++| .++.+.+..+.||.+|+.+|....+++ ... +.|++ .++.| .+...++.+.-.+. -+
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~--~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~ 78 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIP--SSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFIT 78 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCC--ccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceE
Confidence 5789999999 588899999999999999999999977 555 45665 45555 45555666553333 24
Q ss_pred EEEEEe
Q 012177 178 IHLLVR 183 (469)
Q Consensus 178 I~Lv~r 183 (469)
++|.++
T Consensus 79 l~l~~r 84 (162)
T PF13019_consen 79 LRLSLR 84 (162)
T ss_pred EEEEEe
Confidence 555544
No 134
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=91.26 E-value=0.11 Score=54.33 Aligned_cols=42 Identities=38% Similarity=0.574 Sum_probs=35.3
Q ss_pred hhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccCCC
Q 012177 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYS 459 (469)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p~~ 459 (469)
-+.-.+|.=|++.=.|||.||||+..+ |+ ++.||=|++|-..
T Consensus 193 S~A~ysvv~YiLGigDRH~~NILi~~~--G~--~~HIDFG~ilg~~ 234 (350)
T cd00896 193 SCAGYCVITYILGVGDRHLDNLLLTKD--GK--LFHIDFGYILGRD 234 (350)
T ss_pred HHHHHHHHHHHhcccccCCCcEEEcCC--CC--EEEEEhHHhhCCC
Confidence 455677888999999999999999864 77 9999999999543
No 135
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=91.21 E-value=0.12 Score=54.04 Aligned_cols=40 Identities=30% Similarity=0.401 Sum_probs=34.3
Q ss_pred hhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccCC
Q 012177 415 VHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPY 458 (469)
Q Consensus 415 v~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p~ 458 (469)
+.--+|.=|++.=.|||.||||+..+ |+ ++.||=|+.|-.
T Consensus 195 ~AgYsV~tYiLgIgDRHndNImi~~~--Gh--lfHIDFG~iLg~ 234 (354)
T cd00895 195 CAGCCVATYVLGICDRHNDNIMLKTT--GH--MFHIDFGRFLGH 234 (354)
T ss_pred HHHHHHHHHHccccccCCCceeEcCC--CC--EEEEeeHHhcCC
Confidence 44567888999999999999999876 87 999999998863
No 136
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=91.13 E-value=0.91 Score=36.85 Aligned_cols=70 Identities=6% Similarity=-0.007 Sum_probs=53.6
Q ss_pred cceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEE--ECCEEcCC---CCcccccCCCCCCEEEE
Q 012177 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELED---QRLITDICKRNEAVIHL 180 (469)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLi--f~Gk~LeD---~~tL~dy~I~~~svI~L 180 (469)
.-+|.||..+|+.+.-....++|+++|.+-|....+.. ...-.|+ |--+.+.+ +.+|.+.++...+++.|
T Consensus 4 ~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~--~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 4 QCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDG--NDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCC--CCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 35678888899999888999999999999996655533 3445565 56677753 47899999888888775
No 137
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=91.05 E-value=2.2 Score=41.35 Aligned_cols=113 Identities=17% Similarity=0.160 Sum_probs=60.6
Q ss_pred CCCEEEEEE-eC---CeEEEEEeCCCCcHHHHHHHHHHHhCCCCc---ceEEE--EcCee---cccCCccccccCccCcc
Q 012177 31 NDSILIFLS-VG---GSVIPMRVMESDSIASVKLRIQSYNGFFVK---KQKLV--FEGRE---LARSNSRVRDYGLADGN 98 (469)
Q Consensus 31 ~~~M~I~V~-l~---G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~---~QrLv--f~Gk~---L~~D~~tL~dygI~~gs 98 (469)
-.+|+|+.. .+ -+.+.+-|..+.||.+|..+++++.+++.. +.||+ ++++. +. .+.+|... .+..
T Consensus 18 kk~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~-~d~~i~~l--~~~~ 94 (213)
T PF14533_consen 18 KKQFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILS-EDEPISSL--NDYI 94 (213)
T ss_dssp B--EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE--TTSBGGGS----TT
T ss_pred ceEEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecC-CCCchhhc--cCcc
Confidence 456777763 22 246888899999999999999999998765 33443 45544 54 55666654 2222
Q ss_pred ceeeeeec------c----ccceeeeee-------ecceeEEEEeecCchHHHHHHHHHHhcCCC
Q 012177 99 VLHLVLRL------S----DLQAITVTT-------VCGKVFEFHVERGRNVGYVKQQIAKKGREF 146 (469)
Q Consensus 99 tl~LvlrL------s----d~m~I~Vkt-------~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip 146 (469)
++.+-.-. . +.+.|.|-. .-|-.|.+.|.+.+|..++|+||+++.|++
T Consensus 95 ~~r~E~ip~ee~~~~~~~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~ 159 (213)
T PF14533_consen 95 TLRIEEIPEEELNLDDESEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVS 159 (213)
T ss_dssp EEEEEE--GGGSS--TT--TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---
T ss_pred eeeeecCChHHhhcccccccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCC
Confidence 22221111 1 123344322 347788899999999999999999999976
No 138
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=91.02 E-value=0.95 Score=37.06 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=52.8
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEE--ECCEEcCC-CCcccccCCCCCCEEE
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELED-QRLITDICKRNEAVIH 179 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLi--f~Gk~LeD-~~tL~dy~I~~~svI~ 179 (469)
-+|.||..+|+.+.-....++||++|.+-|....+.+ ......|. |-.++|.| +.||.|.++.+.+++.
T Consensus 5 t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~-~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~q 76 (79)
T cd01770 5 TSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEF-AARPFTLMTAFPVKELSDESLTLKEANLLNAVIVQ 76 (79)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCC-CCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEEE
Confidence 4678888999999989999999999999998875432 13455665 67788854 8899999988655543
No 139
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=89.73 E-value=1.5 Score=35.86 Aligned_cols=68 Identities=16% Similarity=0.235 Sum_probs=52.7
Q ss_pred CEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCC-CcceEEE--EcCeecccCCccccccCccCccce
Q 012177 33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFF-VKKQKLV--FEGRELARSNSRVRDYGLADGNVL 100 (469)
Q Consensus 33 ~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip-~~~QrLv--f~Gk~L~~D~~tL~dygI~~gstl 100 (469)
..+|-| ..+|+.+......++||.+|.+-|....+-+ .....|. |-.+.|.+++.+|++.|+.+..++
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 346667 4578999999999999999999999875432 2445565 778999978899999999865443
No 140
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=89.70 E-value=0.49 Score=46.77 Aligned_cols=67 Identities=21% Similarity=0.265 Sum_probs=47.6
Q ss_pred EEEEE-EeCC-eEEE-EEeCCCCcHHHHHHHHHHH-hCCCCcceEEE----EcCeecccCCccccccCccCcccee
Q 012177 34 ILIFL-SVGG-SVIP-MRVMESDSIASVKLRIQSY-NGFFVKKQKLV----FEGRELARSNSRVRDYGLADGNVLH 101 (469)
Q Consensus 34 M~I~V-~l~G-~~~~-l~V~~sdTV~~LK~kIq~~-~Gip~~~QrLv----f~Gk~L~~D~~tL~dygI~~gstl~ 101 (469)
|.|++ ..++ ...+ .+.+..+||.+++++|.++ ..+.+..||+. -.|+.|. |+++|++|+...+.++.
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~-~~s~l~e~~~~s~~~i~ 75 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLI-DNSKLQEYGDGSGATIY 75 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCcccc-chhHHHHhccCCCCEEE
Confidence 67788 4443 3444 5677899999999666555 55666555444 3599998 89999999988886554
No 141
>COG5417 Uncharacterized small protein [Function unknown]
Probab=89.54 E-value=2 Score=34.97 Aligned_cols=69 Identities=17% Similarity=0.297 Sum_probs=54.4
Q ss_pred CEEEEEE---eCCeEEEEEeCCCCcHHHHHHHHHHHhCCCC-----cceEEEEcCeecccCCccccccCccCccceee
Q 012177 33 SILIFLS---VGGSVIPMRVMESDSIASVKLRIQSYNGFFV-----KKQKLVFEGRELARSNSRVRDYGLADGNVLHL 102 (469)
Q Consensus 33 ~M~I~V~---l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~-----~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~L 102 (469)
.|+|+|. -.|.++-+++....+|..|-.-+.+...+.. ++.+..-.++.|. ++..|.+|+|.+|+.+.+
T Consensus 4 ~ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~lls-gd~kL~d~~IadGD~Lei 80 (81)
T COG5417 4 HIKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLS-GDDKLIDYQIADGDILEI 80 (81)
T ss_pred eEEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEec-CCceEEeccccCCCEEEe
Confidence 3667773 3689999999999999999888777655432 3456777899998 889999999999997753
No 142
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=89.22 E-value=0.63 Score=46.06 Aligned_cols=69 Identities=14% Similarity=0.145 Sum_probs=48.1
Q ss_pred ceeeeeeecc-eeEE-EEeecCchHHHHHHHHHHhc-CCCCCCCceEEEE----CCEEcCCCCcccccCCCCCCEEEE
Q 012177 110 QAITVTTVCG-KVFE-FHVERGRNVGYVKQQIAKKG-REFVDLKNQELIC----DGEELEDQRLITDICKRNEAVIHL 180 (469)
Q Consensus 110 m~I~Vkt~~G-k~~~-l~V~~~~TV~~LK~kI~~~~-gip~~~e~QrLif----~Gk~LeD~~tL~dy~I~~~svI~L 180 (469)
|.|++...++ ...+ .....+.|+.+++++|.++. ++. +..+|+.+ +|+.|.|+++|.+|+..++++|.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~--~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKIT--PYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccC--ccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 3455554433 2233 55667889999997776554 444 44444443 899999999999999999988876
No 143
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=88.75 E-value=2.3 Score=34.46 Aligned_cols=71 Identities=18% Similarity=0.148 Sum_probs=55.0
Q ss_pred CCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEE--EcCeecccC--CccccccCccCccceee
Q 012177 32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELARS--NSRVRDYGLADGNVLHL 102 (469)
Q Consensus 32 ~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~~D--~~tL~dygI~~gstl~L 102 (469)
...+|-| ..+|+.+.-....++||.+|.+-|....+.......|+ |-.+.+.++ +.+|.+.|+...++|.+
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 3456777 45789999999999999999999976666665566675 667778744 47899999988877754
No 144
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=88.31 E-value=0.23 Score=52.07 Aligned_cols=39 Identities=33% Similarity=0.475 Sum_probs=33.4
Q ss_pred hhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccC
Q 012177 415 VHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLP 457 (469)
Q Consensus 415 v~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p 457 (469)
+.--+|.=|++.=.|||.||||+..+ |+ ++.||-|++|-
T Consensus 204 ~AgYsV~tYiLGIgDRHndNImi~~~--G~--lfHIDFG~ilg 242 (365)
T cd00894 204 CAGYCVATFVLGIGDRHNDNIMITET--GN--LFHIDFGHILG 242 (365)
T ss_pred hHHHHHHHHhccccCccccceeEcCC--CC--EEEEeeHHhhC
Confidence 44566778999999999999999865 77 99999999994
No 145
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=88.26 E-value=2.5 Score=34.37 Aligned_cols=68 Identities=9% Similarity=0.123 Sum_probs=53.4
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEE--ECCEEcCC---CCcccccCCCCCCEEEE
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELED---QRLITDICKRNEAVIHL 180 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLi--f~Gk~LeD---~~tL~dy~I~~~svI~L 180 (469)
-+|.||..+|+.+.-....++|+++|.+-|....+. .....|+ |--+++.+ +.+|.+.++.+.++|.|
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~---~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGN---GGPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCC---CCCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 457788888998888888999999999999876542 2344555 67788853 58999999998888876
No 146
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=87.76 E-value=0.25 Score=51.60 Aligned_cols=40 Identities=30% Similarity=0.416 Sum_probs=34.5
Q ss_pred hhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccC
Q 012177 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLP 457 (469)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p 457 (469)
.+.--+|.=|++.=.|||.||||+..+ |+ ++.||=|++|-
T Consensus 193 S~AgYsv~tYiLGIgDRHn~NILi~~~--Gh--l~HIDFG~ilg 232 (353)
T cd05176 193 SCAGCCVATYVLGICDRHNDNIMLRST--GH--MFHIDFGKFLG 232 (353)
T ss_pred HHHHHHHHhhhccccCcCCcceEEcCC--CC--EEEEeeHHhcC
Confidence 355677889999999999999999765 87 99999999984
No 147
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=87.59 E-value=3.9 Score=32.64 Aligned_cols=66 Identities=20% Similarity=0.166 Sum_probs=50.4
Q ss_pred eeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEE----CC--EEcCCCCcccccCCCCCCEEEE
Q 012177 114 VTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC----DG--EELEDQRLITDICKRNEAVIHL 180 (469)
Q Consensus 114 Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif----~G--k~LeD~~tL~dy~I~~~svI~L 180 (469)
|+.++|...+++++++.|+.+|=++|+...++. ..+.--|.| +| .-|+..+.|.++.........|
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~-e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l 72 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLK-EKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTL 72 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTS-SGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCC-CccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEE
Confidence 567899999999999999999999999999986 367788888 22 2367778888877653333333
No 148
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=86.52 E-value=1.2 Score=36.31 Aligned_cols=57 Identities=25% Similarity=0.306 Sum_probs=47.2
Q ss_pred eecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccC-CCCCCEEEEEEe
Q 012177 126 VERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC-KRNEAVIHLLVR 183 (469)
Q Consensus 126 V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~-I~~~svI~Lv~r 183 (469)
|.++++|.++++-|....... ....-.|.++|+.|+|...|.++. ++++++|.|+..
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~-~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~ 58 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETC-YLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE 58 (76)
T ss_pred CChhhHHHHHHHHHHhCcccc-ceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence 467899999999999886633 257788999999999999998886 888999998644
No 149
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=86.07 E-value=3.6 Score=34.61 Aligned_cols=66 Identities=26% Similarity=0.314 Sum_probs=45.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEE----cCee-cccCCccccccCccCccceeeeeecccc
Q 012177 43 SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF----EGRE-LARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 43 ~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf----~Gk~-L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
..++...+..|||..++..+.+...| ...-||-- ++.+ |.+.+.||.+.+|..|.+|.+-.|-.|+
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DG 84 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDG 84 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCC
Confidence 46777889999999999999999999 56667752 2444 5545679999999999998887776654
No 150
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=86.00 E-value=3.4 Score=33.15 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=49.3
Q ss_pred eeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEE--ECCEEcC---CCCcccccCCCCCCEE
Q 012177 111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELE---DQRLITDICKRNEAVI 178 (469)
Q Consensus 111 ~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLi--f~Gk~Le---D~~tL~dy~I~~~svI 178 (469)
+|.||..+|+.+.-....++||++|.+-|...... ...-.|+ |-.+.+. .+.+|.+.++.+.+++
T Consensus 4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~---~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~~~ 73 (77)
T cd01767 4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP---AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEVVF 73 (77)
T ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC---CCCEEEEeCCCCccCCCCCccCcHHHcCCccceEE
Confidence 57788889998888889999999999999876542 3445555 5667774 4889999998854443
No 151
>COG5417 Uncharacterized small protein [Function unknown]
Probab=85.87 E-value=4.1 Score=33.22 Aligned_cols=66 Identities=6% Similarity=0.079 Sum_probs=55.0
Q ss_pred eeecceeEEEEeecCchHHHHHHHHHHhcCCCCC-C--CceEEEECCEEcCCCCcccccCCCCCCEEEE
Q 012177 115 TTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVD-L--KNQELICDGEELEDQRLITDICKRNEAVIHL 180 (469)
Q Consensus 115 kt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~-~--e~QrLif~Gk~LeD~~tL~dy~I~~~svI~L 180 (469)
+.-+|.++-+.+....+|..+-..+.+...+..+ . ...++.-.++.|.++..|.||+|.+|+.+.+
T Consensus 12 t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 12 TNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 4456889999999999999999988888765421 2 4678889999999999999999999999875
No 152
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=85.16 E-value=3.9 Score=34.13 Aligned_cols=61 Identities=20% Similarity=0.317 Sum_probs=45.1
Q ss_pred eEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012177 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (469)
Q Consensus 121 ~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~r 183 (469)
.+...++-.+++..||..++.+.++. .+...++..+..|+.+++|.|-|++-..++.+.+.
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~--L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGIS--LSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S----SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCC--cCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence 34566788899999999999999987 89999999999999999999999999999988655
No 153
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=85.12 E-value=5.1 Score=33.28 Aligned_cols=70 Identities=11% Similarity=0.085 Sum_probs=54.3
Q ss_pred ccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECC--EEcC--------CCCcccccCCCCCCE
Q 012177 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG--EELE--------DQRLITDICKRNEAV 177 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~G--k~Le--------D~~tL~dy~I~~~sv 177 (469)
+..+|.||..+|+.+.-....++||++|.+=|... +.. ++...|+.+= +.+. ...||.+.++.+.++
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~--~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~ 79 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KET--PEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEV 79 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCC--CCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccE
Confidence 44678888888988888888999999999999654 333 5777887533 6775 367999999998888
Q ss_pred EEE
Q 012177 178 IHL 180 (469)
Q Consensus 178 I~L 180 (469)
|.+
T Consensus 80 L~V 82 (85)
T cd01774 80 LFV 82 (85)
T ss_pred EEE
Confidence 775
No 154
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=84.98 E-value=0.36 Score=49.55 Aligned_cols=72 Identities=22% Similarity=0.257 Sum_probs=53.0
Q ss_pred ceeeeeeecc--eeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCC--CCCEEEEE
Q 012177 110 QAITVTTVCG--KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKR--NEAVIHLL 181 (469)
Q Consensus 110 m~I~Vkt~~G--k~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~--~~svI~Lv 181 (469)
.+++||..+. +.+.|..+...||++||..+....-...-+.+|||+|.||.|.|...|.|.-++ ...+.||+
T Consensus 10 v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlv 85 (391)
T KOG4583|consen 10 VTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLV 85 (391)
T ss_pred eEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHh
Confidence 4556666553 466788888999999999999887522126899999999999999999887543 33445553
No 155
>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.79 E-value=0.65 Score=52.24 Aligned_cols=39 Identities=38% Similarity=0.665 Sum_probs=31.4
Q ss_pred heeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccCCC
Q 012177 417 KISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYS 459 (469)
Q Consensus 417 ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p~~ 459 (469)
--.+.=|++-=-|||.||||+..+ |+ |+.||-|+-+-.+
T Consensus 689 gYSLvcYlLQvKDRHNGNILiD~E--GH--IIHIDFGFmLsns 727 (847)
T KOG0903|consen 689 GYSLVCYLLQVKDRHNGNILIDEE--GH--IIHIDFGFMLSNS 727 (847)
T ss_pred HHHHHHHhhhcccccCCceEecCC--CC--EEEEeeeeEecCC
Confidence 344566777788999999999775 77 9999999977655
No 156
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=84.07 E-value=9.6 Score=37.82 Aligned_cols=124 Identities=15% Similarity=0.229 Sum_probs=80.5
Q ss_pred CCCCEEEEEE-e--CCeEE----EEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcC------eecccCCccccccCccC
Q 012177 30 SNDSILIFLS-V--GGSVI----PMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG------RELARSNSRVRDYGLAD 96 (469)
Q Consensus 30 ~~~~M~I~V~-l--~G~~~----~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~G------k~L~~D~~tL~dygI~~ 96 (469)
..+.+.||++ . ..+++ .+-|..+++|.++-..|.+..|+|.+..-++|.- ..+. ...++....|.+
T Consensus 65 ~~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~-~~~t~~~~el~~ 143 (249)
T PF12436_consen 65 PSDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPID-PNQTFEKAELQD 143 (249)
T ss_dssp TTTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE---SSSBHHHTT--T
T ss_pred CCCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcC-CCCchhhcccCC
Confidence 3678999993 2 22222 2357889999999999999999999988888763 3354 789999999999
Q ss_pred ccceeeeeecc--------------------ccceeeeee---ecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceE
Q 012177 97 GNVLHLVLRLS--------------------DLQAITVTT---VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQE 153 (469)
Q Consensus 97 gstl~LvlrLs--------------------d~m~I~Vkt---~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~Qr 153 (469)
|+.|-.-...+ ..+.|.++- ..+..|.+.+....|-.+|-++|++..++. |+..|
T Consensus 144 GdIi~fQ~~~~~~~~~~~~~~~v~~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~d--P~~lr 221 (249)
T PF12436_consen 144 GDIICFQRAPSEDLDKSSRYPDVKEYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVD--PEHLR 221 (249)
T ss_dssp TEEEEEEE--GG--GGGSSS-SHHHHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS---GGGEE
T ss_pred CCEEEEEeccccccccccCCCCHHHHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCC--hHHEE
Confidence 99776544332 224444433 234589999999999999999999999976 88888
Q ss_pred EEE
Q 012177 154 LIC 156 (469)
Q Consensus 154 Lif 156 (469)
|+-
T Consensus 222 ~~~ 224 (249)
T PF12436_consen 222 FFT 224 (249)
T ss_dssp EE-
T ss_pred EEE
Confidence 873
No 157
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=84.01 E-value=0.72 Score=45.49 Aligned_cols=42 Identities=26% Similarity=0.389 Sum_probs=35.6
Q ss_pred hhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccCC
Q 012177 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPY 458 (469)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p~ 458 (469)
.+.-.+++=|++.=.|||.+|||+.+. +|+ ++.||=|.||-.
T Consensus 130 SlA~~s~~~YilgigDRh~~NIli~~~-tG~--~~HIDfg~~~~~ 171 (237)
T cd00892 130 STAVMSMVGYILGLGDRHGENILFDSN-TGD--VVHVDFNCLFDK 171 (237)
T ss_pred HHHHHHHHHHHhccCCCCcccEEEEcC-CCc--EEEEehHhhhcc
Confidence 456678889999999999999999983 377 899999999853
No 158
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=83.87 E-value=4 Score=34.09 Aligned_cols=60 Identities=12% Similarity=0.192 Sum_probs=43.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeee
Q 012177 44 VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (469)
Q Consensus 44 ~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (469)
.+...++=.+++..||..++.+.++..+.-.+++.+..|. ++.+|.+.+++-..++.+.+
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~-~~k~L~dQcVqgeGlVQlnv 63 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLE-PHKSLVDQCVQGEGLVQLNV 63 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE---TTSBTTTSS----SEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceec-CCccHHHhhccccCEEEEEE
Confidence 4455667788999999999999999999999999999987 89999999999988888654
No 159
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=83.75 E-value=4.1 Score=34.39 Aligned_cols=69 Identities=10% Similarity=0.212 Sum_probs=57.6
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEE
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL 180 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~L 180 (469)
+.+.|-..+|.++-+.|..+.+-..|-...+...|-. .+..|+.|+|+.++-++|-.|++..++..|..
T Consensus 25 inLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~--m~slRfL~dG~rI~~dqTP~dldmEdnd~iEa 93 (103)
T COG5227 25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKN--MSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEA 93 (103)
T ss_pred cceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcC--cceeEEEEcceecCCCCChhhcCCccchHHHH
Confidence 3444444578888999999999999988888888866 78999999999999999999999888877653
No 160
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=83.70 E-value=1.4 Score=45.70 Aligned_cols=76 Identities=18% Similarity=0.301 Sum_probs=65.5
Q ss_pred EEEEE--Ee-CCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccC-CccccccCccCccceeeeeecccc
Q 012177 34 ILIFL--SV-GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARS-NSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 34 M~I~V--~l-~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D-~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
|.++| .+ ..+.+++.|..+-....++..++...|++...--|+|+++++..+ ...+..||+.++.++.+.-+.++.
T Consensus 1 M~~tvs~~l~~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~d~ 80 (380)
T KOG0012|consen 1 MSLTVSVALNFEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSSDP 80 (380)
T ss_pred CeEEEEEEecceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCCCCC
Confidence 44555 33 457899999999999999999999999999999999999999855 467999999999999988887776
No 161
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=83.58 E-value=6.2 Score=31.65 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=48.6
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEE--EcCeeccc--CCccccccCccCcc
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELAR--SNSRVRDYGLADGN 98 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~~--D~~tL~dygI~~gs 98 (469)
.+|-| ..+|+.+.-....++||.+|.+-|.....- .....|+ |-.+.+.+ .+.+|++.|+....
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~ 71 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEV 71 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCccce
Confidence 35666 457888999999999999999999877543 3445565 56788864 57899999999443
No 162
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=83.34 E-value=3.1 Score=35.08 Aligned_cols=72 Identities=11% Similarity=0.272 Sum_probs=63.7
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeee
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lv 103 (469)
.+.|.+.| ...+.++.+.|..+.+...|...-.+..|-.-...|+.|+|+.+. -+.+-.|++..++..|..+
T Consensus 22 t~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~-~dqTP~dldmEdnd~iEav 94 (103)
T COG5227 22 TKHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRID-LDQTPGDLDMEDNDEIEAV 94 (103)
T ss_pred ccccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecC-CCCChhhcCCccchHHHHH
Confidence 45577777 678899999999999999999999999999999999999999997 8899999999988877654
No 163
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=83.10 E-value=0.51 Score=53.14 Aligned_cols=42 Identities=26% Similarity=0.498 Sum_probs=35.4
Q ss_pred hhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccCCC
Q 012177 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYS 459 (469)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p~~ 459 (469)
...--+|+-|++.=.|||.||||+..+ |+ |+-||-|+.|-.+
T Consensus 1136 S~AGYsViTYILgIgDRHngNILId~d--Gh--LfHIDFGFILg~r 1177 (1374)
T PTZ00303 1136 SAKLFLLLNYIFSIGDRHKGNVLIGTN--GA--LLHIDFRFIFSEK 1177 (1374)
T ss_pred HHHHHHHHHHHhccCcccCCceeEcCC--CC--EEEEecceeecCc
Confidence 344556788899999999999999987 87 9999999988754
No 164
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=82.94 E-value=0.82 Score=44.38 Aligned_cols=43 Identities=33% Similarity=0.476 Sum_probs=36.1
Q ss_pred hhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccCCC
Q 012177 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYS 459 (469)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p~~ 459 (469)
.+--.+++=|++.=.|||.+|||+... +|+ ++-||=|++|-..
T Consensus 119 SlA~~s~~~YilglgDRh~~NIli~~~-~G~--~~hIDfg~~~~~~ 161 (219)
T cd00142 119 SLAGYSVAGYILGIGDRHPDNIMIDLD-TGK--LFHIDFGFIFGKR 161 (219)
T ss_pred HHHHHHHHHHHhccCCCCCccEEEECC-CCe--EEEEeeHHhhCcC
Confidence 466678889999999999999999983 376 8999999999543
No 165
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=82.66 E-value=2 Score=34.93 Aligned_cols=57 Identities=23% Similarity=0.371 Sum_probs=43.9
Q ss_pred eCCCCcHHHHHHHHHHHhC-CCCcceEEEEcCeecccCCcccccc-CccCccceeeeeec
Q 012177 49 VMESDSIASVKLRIQSYNG-FFVKKQKLVFEGRELARSNSRVRDY-GLADGNVLHLVLRL 106 (469)
Q Consensus 49 V~~sdTV~~LK~kIq~~~G-ip~~~QrLvf~Gk~L~~D~~tL~dy-gI~~gstl~LvlrL 106 (469)
|.++++|.+|++-+..... .....-.|.++|+.|. +...|++. |++++.++.++...
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~-~~~el~~i~~~~~~~~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLD-DFVELSEIEGIKDGCVLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccC-CchhhhhhhCCCCCcEEEEEecC
Confidence 5788999999999887744 3344567889999996 78888877 57778877776544
No 166
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=81.93 E-value=7.3 Score=32.34 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=53.8
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEE--cCeecc-------cCCccccccCccCccce
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF--EGRELA-------RSNSRVRDYGLADGNVL 100 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf--~Gk~L~-------~D~~tL~dygI~~gstl 100 (469)
++..+|-| ..+|+.+.-....++||++|-.-|... +..+....|+. --+.+. +.+.||++.||....+|
T Consensus 2 ~~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L 80 (85)
T cd01774 2 PDTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVL 80 (85)
T ss_pred CceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEE
Confidence 35677888 457899999999999999999999754 44556677764 356775 24679999999977766
Q ss_pred ee
Q 012177 101 HL 102 (469)
Q Consensus 101 ~L 102 (469)
.+
T Consensus 81 ~V 82 (85)
T cd01774 81 FV 82 (85)
T ss_pred EE
Confidence 54
No 167
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=81.53 E-value=7.1 Score=31.74 Aligned_cols=69 Identities=17% Similarity=0.289 Sum_probs=52.7
Q ss_pred CEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEE--EcCeecccC--CccccccCccCccceee
Q 012177 33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELARS--NSRVRDYGLADGNVLHL 102 (469)
Q Consensus 33 ~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~~D--~~tL~dygI~~gstl~L 102 (469)
..+|-| ..+|+.+.-....++|+.+|..-|+...+-. ....|+ |-.+.+.++ +.+|.+.|+...++|.|
T Consensus 4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 356777 4578999999999999999999999765433 345565 668888632 47899999998887765
No 168
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=81.08 E-value=5.9 Score=32.75 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=38.2
Q ss_pred EEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcC
Q 012177 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG 79 (469)
Q Consensus 34 M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~G 79 (469)
.-|.|.+.+ ++.|+|.++.+..+|.++|.++.++|.+.-+|.|..
T Consensus 3 ~vvKV~f~~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkd 47 (80)
T cd06406 3 YVVKVHFKY-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKS 47 (80)
T ss_pred eEEEEEEEE-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEecc
Confidence 345554455 999999999999999999999999998888998853
No 169
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.34 E-value=1.5 Score=48.73 Aligned_cols=42 Identities=40% Similarity=0.590 Sum_probs=37.0
Q ss_pred hhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccCCC
Q 012177 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYS 459 (469)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p~~ 459 (469)
.+.--+|.=|+|.=.|||.||+|+++| |+ +..||-||.|-..
T Consensus 685 ScaGYsVitYILGvGDRhldNLllT~d--Gk--~FHiDFgyIlGRD 726 (843)
T KOG0906|consen 685 SCAGYSVITYILGVGDRHLDNLLLTKD--GK--LFHIDFGYILGRD 726 (843)
T ss_pred hhccceeeeeeecccCCCcCceEEccC--Cc--EEEEeeeeeccCC
Confidence 455678899999999999999999998 77 9999999998765
No 170
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=80.04 E-value=1.1 Score=45.14 Aligned_cols=41 Identities=29% Similarity=0.573 Sum_probs=35.5
Q ss_pred hhhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCcc
Q 012177 413 DEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (469)
Q Consensus 413 ~ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~ 456 (469)
..+.-.+++=|++.=.|||.+|||+... +|+ ++.||-|+||
T Consensus 171 ~S~A~~Sv~~YilglgDRH~~NIll~~~-tG~--v~HIDfg~~f 211 (280)
T cd05169 171 RSLAVMSMVGYILGLGDRHPSNIMIDRL-TGK--VIHIDFGDCF 211 (280)
T ss_pred HHHHHHHHHHhheeccCCCcceEEEEcC-CCC--EEEEecHHHH
Confidence 3567788899999999999999999983 477 8999999887
No 171
>cd05124 AFK Actin-Fragmin Kinase (AFK); catalytic domain. The AFK catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). AFK is found in slime molds, ciliates, and flowering plants. It catalyzes the transfer of the gamma-phosphoryl group from ATP specifically to threonine residues in the actin-fragmin complex. The phosphorylation sites are located at a minor contact site for DNase I and at an actin-actin contact site. Fragmin is an actin-binding protein that functions as a regulator of the microfilament system. It interferes with the growth of F-actin by severing actin filaments and capping their ends. The phosphorylation of the actin-fragmin complex inhibits its nucleation activity and results in calcium-dependent capping activity. Thus, AFK plays a role in regulating ac
Probab=79.93 E-value=1.7 Score=42.84 Aligned_cols=50 Identities=22% Similarity=0.238 Sum_probs=33.9
Q ss_pred eEeeeecCcCCcccCCC---CCCC---hhhhhheeeecEEEecCCC----------CCCcEEEecC
Q 012177 391 SLQMFVENVGSCEEMGP---RAFP---VDEVHKISVLDIRLANTDR----------HAGNILVSKD 440 (469)
Q Consensus 391 SlQ~fv~~~~~~~~~~~---~~f~---~~ev~ki~ilD~~~~N~DR----------~~gN~Lv~~~ 440 (469)
-+++||++..-.+.... .... ..++-||-+||+.++|.|| |..|||++..
T Consensus 94 limeYv~G~~l~~~~~~~~s~~~~~~~~~~LG~ii~lDi~inN~DRlPl~~~~~~GN~~Nil~~~~ 159 (238)
T cd05124 94 LIMEYVPGITLFKMTTHRASEYKGEERLIQLGKIIALDIFINNSDRLPLAIWRNSGNFDNIILKDI 159 (238)
T ss_pred eeeeecCCccchhhccccccchhhHHHHHHhhhhheeeeeecCCCCCCccccccCCCcceEEEEcc
Confidence 46778877544322221 1111 2368899999999999998 6788999763
No 172
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=79.35 E-value=0.78 Score=43.94 Aligned_cols=41 Identities=37% Similarity=0.534 Sum_probs=35.5
Q ss_pred hhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccCC
Q 012177 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPY 458 (469)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p~ 458 (469)
.+--.+++-|++.=.|||.+|||+.++ |+ ++.||=|++|-.
T Consensus 92 SlA~~s~~~YilglgDRh~~NIli~~~--G~--v~hIDfg~~~~~ 132 (202)
T smart00146 92 SCAGYSVITYILGLGDRHNDNIMLDKT--GH--LFHIDFGFILGN 132 (202)
T ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeCC--CC--EEEEechhhhCc
Confidence 466788999999999999999999853 77 899999999853
No 173
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=79.29 E-value=8.1 Score=31.93 Aligned_cols=45 Identities=16% Similarity=0.078 Sum_probs=38.0
Q ss_pred EEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCC-cceEEEEc
Q 012177 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFV-KKQKLVFE 78 (469)
Q Consensus 34 M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~-~~QrLvf~ 78 (469)
|+|.++.+|..+.+.+.++.+..+|+++|+++.++.. ....|.|-
T Consensus 1 ~~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~ 46 (82)
T cd06407 1 VRVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYL 46 (82)
T ss_pred CEEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEE
Confidence 4677788999999999999999999999999999864 45566664
No 174
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=78.35 E-value=1.4 Score=42.94 Aligned_cols=42 Identities=31% Similarity=0.510 Sum_probs=35.4
Q ss_pred hhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccCC
Q 012177 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPY 458 (469)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p~ 458 (469)
.+.-.+++=|++.=.|||.+|||+... +|+ ++-||=|++|-.
T Consensus 122 SlA~~s~~~YvlglgDRh~~NIli~~~-tG~--v~hIDf~~~~~~ 163 (222)
T cd05164 122 STAVMSIVGYILGLGDRHLDNILIDRE-TGE--VVHIDFGCIFEK 163 (222)
T ss_pred HHHHHHHHHHHhccCCCCCceEEEECC-CCc--EEEEccHHhhcc
Confidence 456678889999999999999999983 477 899999998853
No 175
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=77.73 E-value=0.93 Score=48.85 Aligned_cols=39 Identities=28% Similarity=0.460 Sum_probs=31.7
Q ss_pred hhhhhheeeecEEEecCCCCCCcEEEecCCCCceEEEee
Q 012177 412 VDEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPI 450 (469)
Q Consensus 412 ~~ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~I 450 (469)
.+++.|..+|.++|.|+|.|+.|+=+-.+.++.++|.|+
T Consensus 327 ~~~~~rr~~fN~LigN~D~H~KN~Sfl~~~~~~~~LAPa 365 (442)
T PRK09775 327 AQRAELLWAFGRLIANTDMHAGNLSFVLSDGRPLALAPV 365 (442)
T ss_pred HHHHHHHHHHhHHhcCCCCCccceEEEECCCCCeeecch
Confidence 346778899999999999999998776654467888876
No 176
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=77.72 E-value=1.9 Score=42.56 Aligned_cols=42 Identities=33% Similarity=0.411 Sum_probs=35.8
Q ss_pred hhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccCC
Q 012177 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPY 458 (469)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p~ 458 (469)
.+.-.+++=|++.=.|||.+|||+.++ .|+ ++-||=|.||-.
T Consensus 127 S~A~~S~~~YilglgDRH~~NIli~~~-tG~--v~HIDfg~~f~~ 168 (235)
T cd05172 127 SLAAMCVSHWILGIGDRHLSNFLVDLE-TGG--LVGIDFGHAFGT 168 (235)
T ss_pred HHHHHHHHhheeeccCCCcccEEEECC-CCc--EEEEeeHhhhcc
Confidence 466788899999999999999999873 477 899999998843
No 177
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=77.20 E-value=1.6 Score=44.63 Aligned_cols=42 Identities=26% Similarity=0.480 Sum_probs=35.9
Q ss_pred hhhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccC
Q 012177 413 DEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLP 457 (469)
Q Consensus 413 ~ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p 457 (469)
..+.-++++=|++.=.|||.+|||+.+. .|+ ++.||=|.||-
T Consensus 199 ~s~A~~s~~~yilglgDRh~~NIli~~~-tG~--v~hiDf~~~f~ 240 (307)
T cd05170 199 RSTAVMSMIGYVIGLGDRHLDNVLIDLK-TGE--VVHIDYNVCFE 240 (307)
T ss_pred HHHHHHHHHHHHccCCCCCCccEEEEcC-CCc--EEEEeeHhhhc
Confidence 3577788899999999999999999973 476 89999999984
No 178
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=76.50 E-value=15 Score=30.16 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=55.4
Q ss_pred CEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEE--EcCeecc--cCCccccccCccCccceeee
Q 012177 33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELA--RSNSRVRDYGLADGNVLHLV 103 (469)
Q Consensus 33 ~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~--~D~~tL~dygI~~gstl~Lv 103 (469)
..+|-| -.+|+.+.-....++++.+|-.-|... |.+....+|+ |--+.+. +.+.+|++.|+....+|.+-
T Consensus 4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 456777 457899999999999999999999875 7777777886 6677774 24579999999888877654
No 179
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=76.05 E-value=2.4 Score=48.73 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=24.9
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHH
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSY 65 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~ 65 (469)
...+-|-. -.+|-...++|....|+.++|..+-.+
T Consensus 35 ~~~i~i~~llP~G~~~~l~v~~e~tls~iK~~l~~~ 70 (1076)
T KOG0904|consen 35 MGSIPIEFLLPTGFLANLRVSREATLSTIKHQLWKR 70 (1076)
T ss_pred CCceeEEEEcCCceEEEEeccccccHHHHHHHHHHH
Confidence 44444444 557788888888888888888877654
No 180
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=75.61 E-value=1.8 Score=47.80 Aligned_cols=39 Identities=31% Similarity=0.542 Sum_probs=32.0
Q ss_pred eecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccCC
Q 012177 420 VLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPY 458 (469)
Q Consensus 420 ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p~ 458 (469)
||.-=...+|=|.|||||+++..+..+++-.|||++---
T Consensus 317 If~~GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~i 355 (538)
T KOG1235|consen 317 IFKTGFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVI 355 (538)
T ss_pred HHhcCCccCCCCCCcEEEecCCCCCccEEEEcccccccc
Confidence 566668899999999999986556777999999997543
No 181
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=75.41 E-value=14 Score=29.49 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=39.0
Q ss_pred EEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcC
Q 012177 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG 79 (469)
Q Consensus 34 M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~G 79 (469)
+.|.+...+.+..+.+.++.|..+|+.+|+++.+++.....|.|..
T Consensus 2 ~~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 2 VDVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred ccEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 4566666889999999999999999999999999877677787764
No 182
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=74.58 E-value=16 Score=30.26 Aligned_cols=69 Identities=17% Similarity=0.311 Sum_probs=55.5
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEE--EcCeeccc--CCccccccCccCccceeee
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELAR--SNSRVRDYGLADGNVLHLV 103 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~~--D~~tL~dygI~~gstl~Lv 103 (469)
-+|.| ..+|+...-....++++.+|-.-++. .|.+.....|+ |--+.+.. .+.+|++.|+....+|.+-
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence 46777 56899999999999999999999998 57788888887 55666642 3479999999988887664
No 183
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=74.56 E-value=19 Score=29.91 Aligned_cols=70 Identities=9% Similarity=0.033 Sum_probs=54.5
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEE--ECCEEc---CCCCcccccCCCCCCEEEEEE
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEEL---EDQRLITDICKRNEAVIHLLV 182 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLi--f~Gk~L---eD~~tL~dy~I~~~svI~Lv~ 182 (469)
-+|.||..+|+.+.-....++++.+|-.-+... +.+ ++..+|+ |=-+.+ +.+.+|.+.++.+.++|.+--
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~~-g~~--~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQSK-GYP--NERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCC--CCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 367888899999988888999999999988874 444 6777776 555555 235799999999999988743
No 184
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=74.11 E-value=1.2 Score=53.40 Aligned_cols=41 Identities=37% Similarity=0.638 Sum_probs=34.3
Q ss_pred hhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccCCC
Q 012177 415 VHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYS 459 (469)
Q Consensus 415 v~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p~~ 459 (469)
..--+|+-+++.=-|||.||||+... |+ ++.||-|+.|-..
T Consensus 1644 ~A~Ysv~s~lLq~KDRHNGNim~Dd~--G~--~iHIDFGf~~e~s 1684 (1803)
T KOG0902|consen 1644 MAGYSVLSYLLQIKDRHNGNIMIDDQ--GH--IIHIDFGFMFESS 1684 (1803)
T ss_pred HHHHHHHHHHcccccccCCceeEccC--CC--EEEEeeeeEEecC
Confidence 34456888999999999999999765 76 9999999988655
No 185
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=73.75 E-value=2 Score=43.33 Aligned_cols=42 Identities=33% Similarity=0.481 Sum_probs=36.0
Q ss_pred hhhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccC
Q 012177 413 DEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLP 457 (469)
Q Consensus 413 ~ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p 457 (469)
..+.-++++=|++.=.|||.+|||+... +|+ ++.||-|.||-
T Consensus 171 ~S~A~~s~~~yilglgDRh~~NIll~~~-tG~--v~hiDf~~~f~ 212 (279)
T cd05171 171 RSVATSSIVGYILGLGDRHANNILIDEK-TAE--VVHIDLGIAFE 212 (279)
T ss_pred HHHHHHHHHHHhhccCCCCcccEEEEcC-cCc--EEEEechhhhc
Confidence 3577788899999999999999999873 477 89999999984
No 186
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=70.69 E-value=35 Score=27.02 Aligned_cols=56 Identities=13% Similarity=0.149 Sum_probs=43.0
Q ss_pred EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcc-eEEEE----cC-ee-cccCCccccccCcc
Q 012177 39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKK-QKLVF----EG-RE-LARSNSRVRDYGLA 95 (469)
Q Consensus 39 ~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~-QrLvf----~G-k~-L~~D~~tL~dygI~ 95 (469)
.++|...+++|+++.|+.+|=++|.++.|+.... .-|.+ .| .. |. .+.+|.++...
T Consensus 3 llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~-~~k~l~~q~~~ 65 (80)
T PF09379_consen 3 LLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLD-LDKKLKKQLKK 65 (80)
T ss_dssp ESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE--SSSBGGGSTBT
T ss_pred CcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceecc-CcccHHHHcCC
Confidence 4678899999999999999999999999997544 45777 12 11 43 67788888766
No 187
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=68.11 E-value=7.5 Score=42.91 Aligned_cols=80 Identities=23% Similarity=0.387 Sum_probs=49.3
Q ss_pred CCCCEEEEEEe---CCeEEEEEeCCCCcHHHHHHHHHHH--hCCCCcc------eEEEEc----Ce-ecccCC-------
Q 012177 30 SNDSILIFLSV---GGSVIPMRVMESDSIASVKLRIQSY--NGFFVKK------QKLVFE----GR-ELARSN------- 86 (469)
Q Consensus 30 ~~~~M~I~V~l---~G~~~~l~V~~sdTV~~LK~kIq~~--~Gip~~~------QrLvf~----Gk-~L~~D~------- 86 (469)
...+|.++|.. ....+++.|...|||.++|+||-.. .+.|..+ --|.+. |+ .|.+.+
T Consensus 186 d~~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~ 265 (539)
T PF08337_consen 186 DYKTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEG 265 (539)
T ss_dssp -S-EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEET
T ss_pred ceEEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCC
Confidence 36778888632 2366999999999999999999877 4554433 234321 23 344221
Q ss_pred -----ccccccCccCccceeeeeecccc
Q 012177 87 -----SRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 87 -----~tL~dygI~~gstl~LvlrLsd~ 109 (469)
.||+.|+|.+|+++-|+.+..+.
T Consensus 266 ~wkrLNTL~HY~V~dga~vaLv~k~~~~ 293 (539)
T PF08337_consen 266 GWKRLNTLAHYKVPDGATVALVPKQHSS 293 (539)
T ss_dssp TEEE--BHHHHT--TTEEEEEEES----
T ss_pred CceEeccHhhcCCCCCceEEEeeccccc
Confidence 36899999999999998876543
No 188
>PF15051 FAM198: FAM198 protein
Probab=68.04 E-value=0.95 Score=46.05 Aligned_cols=123 Identities=24% Similarity=0.237 Sum_probs=72.5
Q ss_pred CCccCCCcCCCcchhheeeeecccCCCCcccccccccCCCCCCCeEEEEeccccc--cCCCCC-----------------
Q 012177 320 EGLKKGTRAGEGALREVAAYILDHPRDATYSLHDEERGFAGVPPTVMVRCLHKGF--NHPNGY----------------- 380 (469)
Q Consensus 320 ~~~~~~~~~g~~~~rEvaAylld~~~~~~~~~~~~~~g~~~VP~T~~v~~~~~~f--~~~~~~----------------- 380 (469)
||+=+..+ -+.||.||=||+ .||++.-=|++-++...+.. .|.+|.
T Consensus 67 CGLiKrp~----D~~EVfAFHLDR-----------VLGLNRTLPaVsRkf~~~~l~yr~~dg~~rPvi~Wdp~i~~~~~~ 131 (326)
T PF15051_consen 67 CGLIKRPL----DMSEVFAFHLDR-----------VLGLNRTLPAVSRKFEFQLLPYRYTDGQPRPVIWWDPDIQPDPNN 131 (326)
T ss_pred eeeECCCC----cHHHHHHHHHHH-----------HhcccccchHhHhhhcccccchhhcCCCcceeEEEccccccCCCC
Confidence 66544344 799999999995 78888888887776544222 222321
Q ss_pred CCCCCCccceeEeeeecCc------CCcccCCCCCCChhhhhheeeecEEEecCCC---C--------------------
Q 012177 381 KHDLENVKIGSLQMFVENV------GSCEEMGPRAFPVDEVHKISVLDIRLANTDR---H-------------------- 431 (469)
Q Consensus 381 ~~~~~~~k~GSlQ~fv~~~------~~~~~~~~~~f~~~ev~ki~ilD~~~~N~DR---~-------------------- 431 (469)
..++....-|..|.-++.. ....+.+.....-.|--|||+||+++-=-|| +
T Consensus 132 dq~s~~L~W~~YQ~lLk~~C~~~g~~Pk~~~~C~~IhH~EW~klALFDFLLQV~dRLDr~CCGF~P~~~d~Cv~~~l~~k 211 (326)
T PF15051_consen 132 DQNSVALTWGQYQQLLKQRCWQNGRVPKPEWPCTGIHHHEWSKLALFDFLLQVHDRLDRYCCGFRPRPEDPCVEEGLHEK 211 (326)
T ss_pred CccceecCHHHHHHHHHHhcCCCCCcCCCCCCCCccchHHHHHHHHHHHHHHHHhhccccCCCCCCCCcChHHhccchhh
Confidence 1234445555555444322 2222333334444578899999998743333 2
Q ss_pred --------CCcEEEecCCCCceEEEeeecCCccCCC
Q 012177 432 --------AGNILVSKDEGGQIKLVPIDHGYCLPYS 459 (469)
Q Consensus 432 --------~gN~Lv~~~~~~~~~l~~IDhg~~~p~~ 459 (469)
..|||+++. ..-+|+-|||-=.|...
T Consensus 212 C~n~~~l~L~HIl~R~~--dp~hLVfidN~G~~~~~ 245 (326)
T PF15051_consen 212 CRNPDELMLVHILVRKS--DPSHLVFIDNAGFFDRS 245 (326)
T ss_pred cCCccceeeeEEEeccC--CCceEEEEcCCCCCCCC
Confidence 245666664 45579999997655433
No 189
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=66.20 E-value=16 Score=35.48 Aligned_cols=65 Identities=14% Similarity=0.128 Sum_probs=51.1
Q ss_pred EEEEeecCchHHHHHHHHHHhcCCCCCCCceEEE-ECC-----EEcC-CCCcccccCCCCCCEEEEEEeeCCcc
Q 012177 122 FEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI-CDG-----EELE-DQRLITDICKRNEAVIHLLVRKSAKV 188 (469)
Q Consensus 122 ~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLi-f~G-----k~Le-D~~tL~dy~I~~~svI~Lv~rks~kv 188 (469)
+..+..++.||+++|.|+....|.+ ++.++|. |+| -.|. +...|..|...++-.||++-.-...+
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~--~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~~~~~ 86 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTE--AESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSNAQSI 86 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCC--ccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecCcccc
Confidence 3455678889999999999999988 8888876 544 2354 47889999999999999986655444
No 190
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=66.04 E-value=40 Score=26.65 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=42.7
Q ss_pred EEEEeCCe--EEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeeccc
Q 012177 36 IFLSVGGS--VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 36 I~V~l~G~--~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (469)
+.|.++|+ ...+++..+.||.+|-+.+ +++...-.+..+|+.+. . ++-+++|+.+.+..-.++
T Consensus 5 m~v~vng~~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-~-----~~~l~~gD~Veii~~V~G 69 (70)
T PRK08364 5 IRVKVIGRGIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-E-----DDPVKDGDYVEVIPVVSG 69 (70)
T ss_pred EEEEEeccccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-C-----CcCcCCCCEEEEEccccC
Confidence 34444554 6677888889999988765 56665555667888885 3 455677888877654443
No 191
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=65.83 E-value=19 Score=29.81 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=34.7
Q ss_pred eEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEE
Q 012177 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEE 160 (469)
Q Consensus 121 ~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~ 160 (469)
++.+.|.+..+..+|+++|.++.+++ +++..|.|..+.
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~--~e~i~LsYkde~ 49 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELP--AEHITLSYKSEA 49 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCC--chhcEEEeccCC
Confidence 88899999999999999999999998 899999996654
No 192
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=64.99 E-value=35 Score=27.21 Aligned_cols=46 Identities=13% Similarity=0.303 Sum_probs=38.9
Q ss_pred CEEEEEEeCCeEEE-EEeCCCCcHHHHHHHHHHHhCCCCcceEEEEc
Q 012177 33 SILIFLSVGGSVIP-MRVMESDSIASVKLRIQSYNGFFVKKQKLVFE 78 (469)
Q Consensus 33 ~M~I~V~l~G~~~~-l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~ 78 (469)
++.|.+...+.... +.+..+.|..+|+.+|+++.+.+.....|.|.
T Consensus 1 t~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~ 47 (84)
T PF00564_consen 1 TVRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK 47 (84)
T ss_dssp SEEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE
T ss_pred CEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee
Confidence 35677777777777 99999999999999999999998777788885
No 193
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=64.95 E-value=35 Score=27.92 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=53.1
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEE--ECCEEcC---CCCcccccCCCCCCEEEE
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELE---DQRLITDICKRNEAVIHL 180 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLi--f~Gk~Le---D~~tL~dy~I~~~svI~L 180 (469)
.+|.||..+|+.+.-....+++++.|-.=|... +.+ ++..+|+ |=-+++. .+.+|.|.++...++|.+
T Consensus 5 ~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~--~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V 77 (80)
T cd01771 5 SKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYP--IDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL 77 (80)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCC--CCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence 467788888888888888999999999999775 434 5677776 5566663 367999999988888876
No 194
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=64.47 E-value=6 Score=46.97 Aligned_cols=35 Identities=37% Similarity=0.550 Sum_probs=29.2
Q ss_pred eeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCcc
Q 012177 418 ISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (469)
Q Consensus 418 i~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~ 456 (469)
-+|--|++.=+|||.+|||.++. |+ +..||-|=-+
T Consensus 1191 ~cVaTYVLGIcDRHNDNIMl~~s--GH--mFHIDFGKFL 1225 (1639)
T KOG0905|consen 1191 WCVATYVLGICDRHNDNIMLTKS--GH--MFHIDFGKFL 1225 (1639)
T ss_pred ceeeeEeeecccccCCceEEecc--Cc--EEEEehhhhc
Confidence 56788999999999999999987 77 8899988544
No 195
>PRK06437 hypothetical protein; Provisional
Probab=64.22 E-value=35 Score=26.83 Aligned_cols=60 Identities=10% Similarity=0.150 Sum_probs=43.2
Q ss_pred EEeCC-eEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecc
Q 012177 38 LSVGG-SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (469)
Q Consensus 38 V~l~G-~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (469)
++.+| +..++++....||.+|-++ .|++++.-.+..+|+.+. .++-+++|+.+.++--.+
T Consensus 5 ~~v~g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~------~~~~L~dgD~Veiv~~V~ 65 (67)
T PRK06437 5 IRVKGHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL------EDHNVKKEDDVLILEVFS 65 (67)
T ss_pred EEecCCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC------CceEcCCCCEEEEEeccc
Confidence 34444 6678888888999988765 578877777778999986 345666788887765443
No 196
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=62.23 E-value=31 Score=27.29 Aligned_cols=60 Identities=12% Similarity=0.205 Sum_probs=42.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHHhCC----CCcceEEEEcCeecccCCccccccCccCccceeeeeeccc
Q 012177 43 SVIPMRVMESDSIASVKLRIQSYNGF----FVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 43 ~~~~l~V~~sdTV~~LK~kIq~~~Gi----p~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (469)
....+++..+.||.+|.+++..+.+- ....-.+..+|+... . ++-+++|+.|.+....++
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-~-----~~~l~~gD~v~i~ppv~G 79 (80)
T cd00754 16 DEEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-L-----DTPLKDGDEVAIIPPVSG 79 (80)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-C-----CcccCCCCEEEEeCCCCC
Confidence 35677777889999999999887532 223345667888775 2 456778999988766554
No 197
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=61.70 E-value=50 Score=30.57 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=38.7
Q ss_pred cceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEE
Q 012177 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC 156 (469)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif 156 (469)
.+.+.|...+|....+.++.+.||.++-+.++.+.|+. ....-.|++
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~-~~~~F~L~~ 49 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIR-ESEYFGLQF 49 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCC-ccceeEEEE
Confidence 35577888899999999999999999999999999986 245555665
No 198
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=60.88 E-value=19 Score=30.11 Aligned_cols=45 Identities=11% Similarity=0.095 Sum_probs=35.8
Q ss_pred eeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCC-CCceEEEE
Q 012177 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVD-LKNQELIC 156 (469)
Q Consensus 112 I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~-~e~QrLif 156 (469)
..+++..|+.+.+.+.++..+.+|++.|+++.|+... ...-.|.|
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 4567889999999999999999999999999996610 13455555
No 199
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=60.73 E-value=6.6 Score=39.13 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=34.5
Q ss_pred hhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCcc
Q 012177 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (469)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~ 456 (469)
.+.-++++=|++.=.|||.+|||+... .|. ++.||-|.+|
T Consensus 145 s~A~~s~~gYilglgdRh~~nili~~~-tG~--v~hiDf~~~f 184 (253)
T cd05163 145 QLALLSFMTYILSINNRNPDKIFISRD-TGN--VYQSDLLPSI 184 (253)
T ss_pred HHHHHHHHHHHhcCCCCCchhEEEEcC-CCc--EEEEeeeeee
Confidence 566788889999999999999999984 466 8999999876
No 200
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=60.44 E-value=40 Score=26.04 Aligned_cols=61 Identities=11% Similarity=0.212 Sum_probs=40.9
Q ss_pred EEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecc
Q 012177 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (469)
Q Consensus 38 V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (469)
|.++|+.+.+ . ..|+.+|...+ ++..+.-.+..+++.+. ...-.+.-+++|+.+.++--..
T Consensus 3 i~~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~--~~~~~~~~L~dgD~Ieiv~~V~ 63 (65)
T PRK06488 3 LFVNGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH--KEARAQFVLHEGDRIEILSPMQ 63 (65)
T ss_pred EEECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC--HHHcCccccCCCCEEEEEEecc
Confidence 4557777776 3 35888888754 56654445678888886 3455567788899888765433
No 201
>smart00455 RBD Raf-like Ras-binding domain.
Probab=59.90 E-value=22 Score=28.44 Aligned_cols=44 Identities=16% Similarity=-0.009 Sum_probs=39.0
Q ss_pred eeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECC
Q 012177 113 TVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG 158 (469)
Q Consensus 113 ~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~G 158 (469)
.|-..+|+...+.+.+..|+.++=+++.++.|+. ++...|+..|
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~--~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLN--PECCVVRLRG 46 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCC--HHHEEEEEcC
Confidence 4556789999999999999999999999999987 8888888855
No 202
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=59.13 E-value=21 Score=28.81 Aligned_cols=45 Identities=20% Similarity=0.052 Sum_probs=39.0
Q ss_pred eeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECC
Q 012177 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG 158 (469)
Q Consensus 112 I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~G 158 (469)
+.|...+|+...+.|.+..||.++=.++.++.|+. ++...|++.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~--~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLN--PECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCC--HHHEEEEEec
Confidence 34667899999999999999999999999999987 7888887754
No 203
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=59.03 E-value=38 Score=26.73 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=40.1
Q ss_pred eEEEEeecCchHHHHHHHHHHhcCC--CCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012177 121 VFEFHVERGRNVGYVKQQIAKKGRE--FVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 121 ~~~l~V~~~~TV~~LK~kI~~~~gi--p~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv 181 (469)
...++++...||.+|.+.+....+. ........+..+|+... .+.-+++++.|.++
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ 74 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAII 74 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEe
Confidence 4567777788999999999987542 00034566778998887 34567788888875
No 204
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=57.89 E-value=29 Score=28.03 Aligned_cols=43 Identities=14% Similarity=0.063 Sum_probs=37.4
Q ss_pred EE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcC
Q 012177 37 FL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG 79 (469)
Q Consensus 37 ~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~G 79 (469)
.| ..+|+...+.|.+++||.++-+++.++.|+.+..=.|++.|
T Consensus 3 ~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 3 RVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 45 44788999999999999999999999999999888887654
No 205
>PRK06437 hypothetical protein; Provisional
Probab=56.87 E-value=63 Score=25.41 Aligned_cols=54 Identities=11% Similarity=0.026 Sum_probs=40.2
Q ss_pred cceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 012177 118 CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (469)
Q Consensus 118 ~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~ 182 (469)
.++...++++...||.+|=+. .+++ ++...+..+|+.+. .++-+++++.|.++-
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~--~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLD--EEEYVVIVNGSPVL-----EDHNVKKEDDVLILE 62 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCC--CccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence 456677888888888876543 4665 78888889999997 555677888888753
No 206
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=55.68 E-value=27 Score=39.62 Aligned_cols=49 Identities=24% Similarity=0.294 Sum_probs=41.5
Q ss_pred EEEEE--EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeec
Q 012177 34 ILIFL--SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGREL 82 (469)
Q Consensus 34 M~I~V--~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L 82 (469)
+.|+| ..+...+.+-+.++.|+..++.+|...+|+|...|.|+|.|...
T Consensus 314 ~vvhiFs~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 314 KVVHIFSMVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred heeEEEeeccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 44555 44668899999999999999999999999999999999986553
No 207
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=55.29 E-value=51 Score=27.17 Aligned_cols=43 Identities=19% Similarity=0.178 Sum_probs=34.4
Q ss_pred ecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEE
Q 012177 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEE 160 (469)
Q Consensus 117 ~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~ 160 (469)
..|..+.+.+.++.+..+|+++|+++.++. +...-.|-|-..+
T Consensus 7 ~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~-~~~~f~LkY~Dde 49 (82)
T cd06407 7 YGEEKIRFRLPPSWGFTELKQEIAKRFKLD-DMSAFDLKYLDDD 49 (82)
T ss_pred eCCeEEEEEcCCCCCHHHHHHHHHHHhCCC-CCCeeEEEEECCC
Confidence 467788899999999999999999999965 1256777775544
No 208
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=55.00 E-value=39 Score=26.89 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=33.9
Q ss_pred cceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCE
Q 012177 118 CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGE 159 (469)
Q Consensus 118 ~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk 159 (469)
.+....+.+.+..|-.+|+.+|+++.+.. .....|-|.+.
T Consensus 9 ~~~~~~~~~~~~~s~~dL~~~i~~~~~~~--~~~~~l~Y~De 48 (81)
T smart00666 9 GGETRRLSVPRDISFEDLRSKVAKRFGLD--NQSFTLKYQDE 48 (81)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHhCCC--CCCeEEEEECC
Confidence 56788899999999999999999999976 56778888644
No 209
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=54.82 E-value=21 Score=37.69 Aligned_cols=70 Identities=17% Similarity=0.252 Sum_probs=53.9
Q ss_pred CCCEEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCc-ceEEE--EcCeecccCCccccccCccCcccee
Q 012177 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVK-KQKLV--FEGRELARSNSRVRDYGLADGNVLH 101 (469)
Q Consensus 31 ~~~M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~-~QrLv--f~Gk~L~~D~~tL~dygI~~gstl~ 101 (469)
..+|||.+. +|..+...++.+.||.+|+.-|.....-... .+.|+ |--++|.|++.||++.|+.+-..+.
T Consensus 305 tTsIQIRLa-nG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlvq 377 (380)
T KOG2086|consen 305 TTSIQIRLA-NGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLVQ 377 (380)
T ss_pred cceEEEEec-CCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhhh
Confidence 455666654 6677788899999999999999988654433 56665 6799999889999999998765443
No 210
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=54.77 E-value=43 Score=26.65 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=50.7
Q ss_pred ecceeEEEEeecCchHHHHHHHHHHhcC-CCCCCCceEEE-ECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 117 VCGKVFEFHVERGRNVGYVKQQIAKKGR-EFVDLKNQELI-CDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 117 ~~Gk~~~l~V~~~~TV~~LK~kI~~~~g-ip~~~e~QrLi-f~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
.+|+...++...+....-+.++--+..+ ..-|++.-.|- -+|..|+-.+.+.||++.++-.+.|-++.
T Consensus 3 VNGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKA 72 (76)
T PF10790_consen 3 VNGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKA 72 (76)
T ss_pred eCCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeec
Confidence 3577777887777777777766655544 22237777776 47888888999999999999999887653
No 211
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=54.74 E-value=35 Score=38.78 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=50.9
Q ss_pred ecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCC--CCCCEEEEEEeeCCccc
Q 012177 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICK--RNEAVIHLLVRKSAKVR 189 (469)
Q Consensus 117 ~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I--~~~svI~Lv~rks~kv~ 189 (469)
.++..+.+.+++..|+..++.+|.+..|+| .+.|.|+|.|...-... +.-++ .-++.|.++...+..+-
T Consensus 322 ~~~~~~~~~~~~~ntl~~~~~~I~~~Tgip--e~~qeLL~e~~~~h~~~--~~Q~~~dg~~~~l~l~~~~~~~v~ 392 (732)
T KOG4250|consen 322 VQATSHEYYVHADNTLHSLIERISKQTGIP--EGKQELLFEGGLSHLED--SAQCIPDGLDSPLYLVSDQDKNVD 392 (732)
T ss_pred ccceEEEEecChhhhHHHHHHHHHHhhCCC--CccceeeeecCccccCc--ccccCCCCCCCceEEEecCCCcch
Confidence 456778899999999999999999999998 99999999866533222 11122 24567777777766663
No 212
>smart00455 RBD Raf-like Ras-binding domain.
Probab=54.10 E-value=36 Score=27.12 Aligned_cols=41 Identities=7% Similarity=0.047 Sum_probs=36.5
Q ss_pred EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcC
Q 012177 39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG 79 (469)
Q Consensus 39 ~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~G 79 (469)
..+|+...+.+.|+.||.++-+++.++.|+.+..-.++..|
T Consensus 6 LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 6 LPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 34678999999999999999999999999998888888755
No 213
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=53.25 E-value=82 Score=26.45 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=37.8
Q ss_pred CEEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcC
Q 012177 33 SILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG 79 (469)
Q Consensus 33 ~M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~G 79 (469)
.|+|.|...|.+..+.|.++.+..+|..+|..+.++. ...+|.|..
T Consensus 2 ~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykD 47 (86)
T cd06408 2 KIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKD 47 (86)
T ss_pred cEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEc
Confidence 4677777788999999999999999999999999985 344555543
No 214
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=51.75 E-value=48 Score=26.20 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=35.5
Q ss_pred EEEEEeCCeEEEEEeC-CCCcHHHHHHHHHHHhCCCCcceEEEEcC
Q 012177 35 LIFLSVGGSVIPMRVM-ESDSIASVKLRIQSYNGFFVKKQKLVFEG 79 (469)
Q Consensus 35 ~I~V~l~G~~~~l~V~-~sdTV~~LK~kIq~~~Gip~~~QrLvf~G 79 (469)
.|.+...|....+.+. .+.|..+|+.+|+++.+++.....|.|..
T Consensus 2 ~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 2 RVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred cEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 4555667778888888 89999999999999999876555666643
No 215
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=50.54 E-value=41 Score=28.19 Aligned_cols=39 Identities=21% Similarity=0.140 Sum_probs=33.2
Q ss_pred EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCc---ceEEEE
Q 012177 39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVK---KQKLVF 77 (469)
Q Consensus 39 ~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~---~QrLvf 77 (469)
+..|+++.+.+.++.++.+|++.|.++.|+... .-.|.|
T Consensus 7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 7 DPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred CCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 457999999999999999999999999999863 445555
No 216
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=50.31 E-value=12 Score=41.39 Aligned_cols=31 Identities=39% Similarity=0.613 Sum_probs=25.6
Q ss_pred EEecCCCCCCcEEEecCCCCceEEEeeecCCccCC
Q 012177 424 RLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPY 458 (469)
Q Consensus 424 ~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p~ 458 (469)
=..=+|=|.|||+|..+ |+ ++.+|||+.-+-
T Consensus 285 gffHaDpHpGNi~v~~~--g~--i~~lDfGi~g~l 315 (517)
T COG0661 285 GFFHADPHPGNILVRSD--GR--IVLLDFGIVGRL 315 (517)
T ss_pred CccccCCCccceEEecC--Cc--EEEEcCcceecC
Confidence 35569999999999987 66 999999996543
No 217
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=50.27 E-value=13 Score=42.11 Aligned_cols=37 Identities=41% Similarity=0.801 Sum_probs=30.1
Q ss_pred hhhhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccC
Q 012177 412 VDEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLP 457 (469)
Q Consensus 412 ~~ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p 457 (469)
++-||||+.+. -|=+.+||||..| |+++| -|-|||--
T Consensus 742 iesVHkmGFIH-----RDiKPDNILIDrd--GHIKL--TDFGLCTG 778 (1034)
T KOG0608|consen 742 IESVHKMGFIH-----RDIKPDNILIDRD--GHIKL--TDFGLCTG 778 (1034)
T ss_pred HHHHHhcccee-----cccCccceEEccC--Cceee--eecccccc
Confidence 45699999763 5779999999887 99777 59999954
No 218
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=49.64 E-value=64 Score=24.98 Aligned_cols=54 Identities=17% Similarity=0.208 Sum_probs=36.8
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv 181 (469)
|+|+| +|+. ++++...|+..||+++.. +.-.++|+|=...+ |+-+++++.|.+.
T Consensus 1 M~I~v---N~k~--~~~~~~~tl~~lr~~~k~--------~~DI~I~NGF~~~~-----d~~L~e~D~v~~I 54 (57)
T PF14453_consen 1 MKIKV---NEKE--IETEENTTLFELRKESKP--------DADIVILNGFPTKE-----DIELKEGDEVFLI 54 (57)
T ss_pred CEEEE---CCEE--EEcCCCcCHHHHHHhhCC--------CCCEEEEcCcccCC-----ccccCCCCEEEEE
Confidence 45554 3454 666688899999987653 33378999999885 4555667777664
No 219
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=49.42 E-value=5.6 Score=40.76 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=0.0
Q ss_pred CCCCCCEEEEE-EeCCeEEEEEe--C-C--CCcHHHHHHHHHH----------HhCCCCcceE-----EEEcCeecccCC
Q 012177 28 KLSNDSILIFL-SVGGSVIPMRV--M-E--SDSIASVKLRIQS----------YNGFFVKKQK-----LVFEGRELARSN 86 (469)
Q Consensus 28 ~~~~~~M~I~V-~l~G~~~~l~V--~-~--sdTV~~LK~kIq~----------~~Gip~~~Qr-----Lvf~Gk~L~~D~ 86 (469)
+.+..+|.|++ .+....+.|.+ . + +.||.++|..+++ +.++|.++.+ |.|+-+++. |.
T Consensus 73 Pgs~~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~-~~ 151 (309)
T PF12754_consen 73 PGSSKSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVG-DS 151 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCC-Cc
Confidence 34466677776 44333333332 2 2 6789999999999 8999999999 999999997 78
Q ss_pred ccccccCcc
Q 012177 87 SRVRDYGLA 95 (469)
Q Consensus 87 ~tL~dygI~ 95 (469)
.+|.+..-.
T Consensus 152 ktl~e~l~~ 160 (309)
T PF12754_consen 152 KTLAEVLAD 160 (309)
T ss_dssp ---------
T ss_pred CcHHHHHhc
Confidence 888886544
No 220
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=49.01 E-value=96 Score=26.73 Aligned_cols=67 Identities=16% Similarity=0.138 Sum_probs=45.7
Q ss_pred ceeEEEEeecCchHHHHHHHHHHh----cCCCCCCC-ceEEEECCEE--cCCCCccccc-----CCCCCCEEEEEEeeC
Q 012177 119 GKVFEFHVERGRNVGYVKQQIAKK----GREFVDLK-NQELICDGEE--LEDQRLITDI-----CKRNEAVIHLLVRKS 185 (469)
Q Consensus 119 Gk~~~l~V~~~~TV~~LK~kI~~~----~gip~~~e-~QrLif~Gk~--LeD~~tL~dy-----~I~~~svI~Lv~rks 185 (469)
...+++.++.++|+.+|.+.+-.+ .+...+++ +-.|--.|+. |.....|.+| |++.+..++|++...
T Consensus 28 ~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~~L~L~~~ 106 (108)
T smart00144 28 QQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREPHLVLMTL 106 (108)
T ss_pred ceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCceEEEEec
Confidence 467889999999999999887665 22221233 5566555554 5556666666 467889999887643
No 221
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=48.89 E-value=1.3e+02 Score=25.43 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=42.7
Q ss_pred eeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEE----CCEE-cCC-CCcccccCCCCCCEEEEEEee
Q 012177 120 KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC----DGEE-LED-QRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 120 k~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif----~Gk~-LeD-~~tL~dy~I~~~svI~Lv~rk 184 (469)
..++....+.+||+.++..+.+.+.+. ++.||-- ++-+ |.+ +.||.|.++..|.+|.|-.|.
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i~---~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn 81 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNIQ---EETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERN 81 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT-T---S-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--
T ss_pred cHhHhhccccChHHHHHHHHHHHhCCC---ccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeec
Confidence 466778889999999999999999984 5677764 3444 544 579999999999988876553
No 222
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=48.24 E-value=60 Score=25.20 Aligned_cols=59 Identities=24% Similarity=0.254 Sum_probs=42.4
Q ss_pred EEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeee
Q 012177 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (469)
Q Consensus 38 V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (469)
|+++|+.+.+. +..|+.+|-.. .+++...--+..++..+.+++.. .+ +++|+.+.++--
T Consensus 3 i~vNG~~~~~~--~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~~--~~-L~~gD~ieIv~~ 61 (65)
T PRK05863 3 VVVNEEQVEVD--EQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDWA--TK-LRDGARLEVVTA 61 (65)
T ss_pred EEECCEEEEcC--CCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHhh--hh-cCCCCEEEEEee
Confidence 45567766654 67787777654 57888777888999999865443 45 999999887643
No 223
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=47.76 E-value=1.5e+02 Score=27.45 Aligned_cols=111 Identities=18% Similarity=0.334 Sum_probs=71.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCcccee----eeeeccc-cceeeeeeec
Q 012177 44 VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH----LVLRLSD-LQAITVTTVC 118 (469)
Q Consensus 44 ~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~----LvlrLsd-~m~I~Vkt~~ 118 (469)
.++-+...-+|...|-.+|.+..|| .|++.+|..|.. ---||...|.-+. -.+...| .+.+.|++
T Consensus 5 IfP~R~L~peTtEklLN~l~~i~GI----~R~vi~Gp~LPk----~VpyGPa~G~pv~h~~Rk~I~V~g~~veL~V~v-- 74 (153)
T PF02505_consen 5 IFPHRLLKPETTEKLLNELYSIEGI----RRVVIHGPRLPK----TVPYGPARGTPVNHPDRKVINVGGEEVELTVKV-- 74 (153)
T ss_pred EechhcCCHHHHHHHHHHHhccCCE----EEEEEECCCCCC----CCCCCCCCCCcCCCCcceEEEECCEEEEEEEEE--
Confidence 3455667778999999999988775 589999999982 2357777665332 2333322 24555554
Q ss_pred ceeEEEEeec-CchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccC
Q 012177 119 GKVFEFHVER-GRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171 (469)
Q Consensus 119 Gk~~~l~V~~-~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~ 171 (469)
|+ +-++++. .+.+..+++.-.+.+..+ .+ +..|+=+....|++||.
T Consensus 75 Gr-i~lele~~~~~ie~I~~iCee~lpf~--y~----i~~G~f~r~~~TvtDY~ 121 (153)
T PF02505_consen 75 GR-IILELEDEEDVIEKIREICEEVLPFG--YD----IKEGKFIRTKPTVTDYA 121 (153)
T ss_pred eE-EEEEecCcHHHHHHHHHHHHHhCCCc--eE----eeeeEEeccCCchhhhh
Confidence 44 5577777 566666665444433222 11 23689999999999996
No 224
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=47.66 E-value=29 Score=36.34 Aligned_cols=68 Identities=16% Similarity=0.155 Sum_probs=57.6
Q ss_pred cceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCC--CCcccccCCCCCCEEEEEEeeCCc
Q 012177 118 CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELED--QRLITDICKRNEAVIHLLVRKSAK 187 (469)
Q Consensus 118 ~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD--~~tL~dy~I~~~svI~Lv~rks~k 187 (469)
..+.+.+.|...-....++..++...++. .+...|+|+.+.+.. ...+..|+...++++.+.-+.++.
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~--~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~d~ 80 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIV--YDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSSDP 80 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcc--cchhhcccCCCccccchhhhhhhcccccceeEeccCCCCCC
Confidence 55778899999899999999999999988 788899999999965 577899999999998875555554
No 225
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=47.18 E-value=6.7 Score=40.58 Aligned_cols=72 Identities=14% Similarity=0.224 Sum_probs=48.8
Q ss_pred CCEEEEEE-eCC--eEEEEEeCCCCcHHHHHHHHHHHhC--CCCcceEEEEcCeecccCCccccccCccC--ccceeeee
Q 012177 32 DSILIFLS-VGG--SVIPMRVMESDSIASVKLRIQSYNG--FFVKKQKLVFEGRELARSNSRVRDYGLAD--GNVLHLVL 104 (469)
Q Consensus 32 ~~M~I~V~-l~G--~~~~l~V~~sdTV~~LK~kIq~~~G--ip~~~QrLvf~Gk~L~~D~~tL~dygI~~--gstl~Lvl 104 (469)
.+..++|+ .+. +-.+|..+..-||.+||..++.-.- --...|||+|.|+.|. |..+|+|.-++. ..++||+.
T Consensus 8 ~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgklll-d~qcl~d~lrkq~k~Hv~hlvc 86 (391)
T KOG4583|consen 8 FPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLL-DHQCLTDWLRKQVKEHVKHLVC 86 (391)
T ss_pred cceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccc-cchhHHHHHHHHHHHHHHHHhc
Confidence 34455552 233 4456666678899999998887632 2245699999999998 888888875543 34555554
No 226
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=47.03 E-value=1.2e+02 Score=23.90 Aligned_cols=50 Identities=10% Similarity=0.088 Sum_probs=36.7
Q ss_pred eEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012177 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 121 ~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv 181 (469)
...++++...||.+|-+.+ +++ .+...+..+|+.+.. +.-+++++.|.++
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~--~~~v~v~vNg~iv~~-----~~~l~~gD~Veii 64 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFN--TESAIAKVNGKVALE-----DDPVKDGDYVEVI 64 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCC--CccEEEEECCEECCC-----CcCcCCCCEEEEE
Confidence 5667788888999887655 544 566777889998853 5556778888775
No 227
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=46.07 E-value=77 Score=26.70 Aligned_cols=44 Identities=7% Similarity=0.187 Sum_probs=34.0
Q ss_pred EEEEEeCCeEEEEEeCC-----CCcHHHHHHHHHHHhCCCC-cceEEEEc
Q 012177 35 LIFLSVGGSVIPMRVME-----SDSIASVKLRIQSYNGFFV-KKQKLVFE 78 (469)
Q Consensus 35 ~I~V~l~G~~~~l~V~~-----sdTV~~LK~kIq~~~Gip~-~~QrLvf~ 78 (469)
.|.|+..|....+.+.. +.+...|+.+|++...++. ..-.|.|.
T Consensus 2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~ 51 (91)
T cd06398 2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYT 51 (91)
T ss_pred EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 35567788787777774 6899999999999999987 34455564
No 228
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=45.87 E-value=51 Score=30.54 Aligned_cols=39 Identities=10% Similarity=0.106 Sum_probs=34.3
Q ss_pred CCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCC
Q 012177 32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFV 70 (469)
Q Consensus 32 ~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~ 70 (469)
..+.|.| ..+|.+..+.++++.|+.+|-..+..+.|+..
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~ 41 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRE 41 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCc
Confidence 4567778 67889999999999999999999999999953
No 229
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=45.45 E-value=55 Score=27.00 Aligned_cols=35 Identities=9% Similarity=0.208 Sum_probs=32.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEc
Q 012177 44 VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE 78 (469)
Q Consensus 44 ~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~ 78 (469)
|+.|.+.+..+.++|..+|.++...+++.-+|.|.
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 78899999999999999999999999999999885
No 230
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=44.91 E-value=86 Score=26.02 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=34.3
Q ss_pred EEEEEeCCeEEEEEeCC--CCcHHHHHHHHHHHhCCCCcceEEEE
Q 012177 35 LIFLSVGGSVIPMRVME--SDSIASVKLRIQSYNGFFVKKQKLVF 77 (469)
Q Consensus 35 ~I~V~l~G~~~~l~V~~--sdTV~~LK~kIq~~~Gip~~~QrLvf 77 (469)
.|.++..|.+..+.+.+ +-|..+|++.|+...+++ ...|.|
T Consensus 2 ~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKY 44 (81)
T cd06396 2 NLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKY 44 (81)
T ss_pred EEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEE
Confidence 45668899999999999 669999999999999998 444544
No 231
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=44.52 E-value=1.4e+02 Score=24.79 Aligned_cols=66 Identities=18% Similarity=0.202 Sum_probs=46.3
Q ss_pred CCCEEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeee
Q 012177 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (469)
Q Consensus 31 ~~~M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (469)
...+.+.|+++|+.+.+ ....||.+|-.. .+++...--+..+|..+.+ ..-..+-+++|+.|.++-
T Consensus 14 ~~~~~m~I~VNG~~~~~--~~~~tl~~LL~~----l~~~~~~vAVevNg~iVpr--~~w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 14 AAMVLITISINDQSIQV--DISSSLAQIIAQ----LSLPELGCVFAINNQVVPR--SEWQSTVLSSGDAISLFQ 79 (84)
T ss_pred CCCceEEEEECCeEEEc--CCCCcHHHHHHH----cCCCCceEEEEECCEEeCH--HHcCcccCCCCCEEEEEE
Confidence 33445666677776665 467788877664 4677666667789999974 556677788999888754
No 232
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=43.71 E-value=61 Score=25.12 Aligned_cols=55 Identities=11% Similarity=0.232 Sum_probs=37.5
Q ss_pred EEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeee
Q 012177 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (469)
Q Consensus 34 M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (469)
|+|+| +|+ .+++..+.|+.+||.++... .-.++++|-+.. ++ +-+++++.|.+.-
T Consensus 1 M~I~v--N~k--~~~~~~~~tl~~lr~~~k~~------~DI~I~NGF~~~-~d-----~~L~e~D~v~~Ik 55 (57)
T PF14453_consen 1 MKIKV--NEK--EIETEENTTLFELRKESKPD------ADIVILNGFPTK-ED-----IELKEGDEVFLIK 55 (57)
T ss_pred CEEEE--CCE--EEEcCCCcCHHHHHHhhCCC------CCEEEEcCcccC-Cc-----cccCCCCEEEEEe
Confidence 55555 333 45677888999999986643 336899999997 54 4455677776653
No 233
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=43.16 E-value=1.3e+02 Score=23.08 Aligned_cols=60 Identities=20% Similarity=0.386 Sum_probs=41.4
Q ss_pred EEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeee
Q 012177 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (469)
Q Consensus 38 V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (469)
|+++|+.+ ++....||.++-.. .+++...-.+..+|..+.+ ..-.++-+++|+.+.++--
T Consensus 3 i~vNG~~~--~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r--~~~~~~~l~~gD~vei~~~ 62 (66)
T PRK05659 3 IQLNGEPR--ELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPR--SQHASTALREGDVVEIVHA 62 (66)
T ss_pred EEECCeEE--EcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCH--HHcCcccCCCCCEEEEEEE
Confidence 45566655 45577888887764 5777777777889988873 3445566788888876543
No 234
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=43.09 E-value=1.1e+02 Score=24.48 Aligned_cols=60 Identities=8% Similarity=0.151 Sum_probs=40.9
Q ss_pred eEEEEEeCCC-CcHHHHHHHHHHHhC-CCC--cceEEEEcCeecccCCccccccCccCccceeeeeeccc
Q 012177 43 SVIPMRVMES-DSIASVKLRIQSYNG-FFV--KKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 43 ~~~~l~V~~s-dTV~~LK~kIq~~~G-ip~--~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (469)
....+++..+ .||.+|+..+.++.. +.. ....+..+++... + +.-|++|+.+.+....++
T Consensus 16 ~~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~-~-----~~~l~dgDevai~PpvsG 79 (80)
T TIGR01682 16 DEETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVT-D-----DALLNEGDEVAFIPPVSG 79 (80)
T ss_pred CeEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcC-C-----CcCcCCCCEEEEeCCCCC
Confidence 3467888866 899999999988864 111 1234556777765 3 456778998888776654
No 235
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=42.70 E-value=12 Score=38.88 Aligned_cols=58 Identities=33% Similarity=0.311 Sum_probs=48.3
Q ss_pred CCCEEEEE--EeCCeEEEEEeC-CCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccc
Q 012177 31 NDSILIFL--SVGGSVIPMRVM-ESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRV 89 (469)
Q Consensus 31 ~~~M~I~V--~l~G~~~~l~V~-~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL 89 (469)
..++++.. ..+|+++.+.+. .++.+..+|.|+....++++.+|++.+.|.-|. |+.++
T Consensus 279 ~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~-d~~~~ 339 (341)
T KOG0007|consen 279 PVSIQVSRPVPADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLK-DNRSL 339 (341)
T ss_pred CcceecccccCCCCceeeeccccccccccccccccccccccchhheeeccCCcccC-ccccc
Confidence 44555555 567889888888 788999999999999999999999999999998 55444
No 236
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=42.38 E-value=1.4e+02 Score=24.21 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=41.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHHhCC-----C------CcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 43 SVIPMRVMESDSIASVKLRIQSYNGF-----F------VKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 43 ~~~~l~V~~sdTV~~LK~kIq~~~Gi-----p------~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
....+++. ..||.+|.+.+.++..- - ...-.+..+|+... .+.. .-+++|+.+.+....+++
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~-~~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVD-WGLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecC-ccCC---CCCCCCCEEEEeCCCcCC
Confidence 45677776 88999999999887531 0 01234556777775 3321 568889999888766653
No 237
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=42.13 E-value=1e+02 Score=24.78 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=38.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHHhC-CCCc-ce-EEEEcCeecccCCccccccCccCccceeeeeeccc
Q 012177 43 SVIPMRVMESDSIASVKLRIQSYNG-FFVK-KQ-KLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 43 ~~~~l~V~~sdTV~~LK~kIq~~~G-ip~~-~Q-rLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (469)
....+++....||++|++.+..+.. +... .. .+..+|+... + ++-+++|+.|.+....++
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-~-----~~~l~dgDeVai~PpvsG 81 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-E-----SAALKDGDELAIIPPISG 81 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-C-----CcCcCCCCEEEEeCCCCC
Confidence 5677888889999999999976641 1110 11 2445666653 3 345667888887765554
No 238
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=42.01 E-value=75 Score=24.45 Aligned_cols=62 Identities=19% Similarity=0.309 Sum_probs=41.8
Q ss_pred EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeeccc
Q 012177 39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 39 ~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (469)
+++|+.+.+ ....||.+|.+++ +++.+.-.+..+|+.+.+ ..-.++-|++|+.+.+..-.++
T Consensus 3 ~iNg~~~~~--~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~--~~~~~~~L~~gD~V~ii~~v~G 64 (65)
T cd00565 3 TVNGEPREV--EEGATLAELLEEL----GLDPRGVAVALNGEIVPR--SEWASTPLQDGDRIEIVTAVGG 64 (65)
T ss_pred EECCeEEEc--CCCCCHHHHHHHc----CCCCCcEEEEECCEEcCH--HHcCceecCCCCEEEEEEeccC
Confidence 445665554 4678999888765 466666677789998873 2333456788998887654443
No 239
>KOG3316 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.68 E-value=10 Score=35.00 Aligned_cols=59 Identities=20% Similarity=0.221 Sum_probs=43.7
Q ss_pred CcEEEEEeCCCCeEEEEEecCCCCCCCcCCCCCCCCCCCCCCccCCCcCCCcchhheeeeecccC
Q 012177 280 GGAYFMQDSSGQKYISVFKPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHP 344 (469)
Q Consensus 280 ~g~y~~~~~~g~~~~~vfKP~deEp~~~~nP~g~~~~~~~~~~~~~~~~g~~~~rEvaAylld~~ 344 (469)
-|+|.++|-+ ...+=+=.+++.|+.--| +...++||+=||.|.+-|+.+-|-|.+-+-|
T Consensus 94 rG~yVlqD~~---Fr~l~~~s~G~~~~~~a~---~flaFpcGliRGvLs~LGi~siVtA~v~slP 152 (163)
T KOG3316|consen 94 RGTYVLQDNK---FRWLTSMSPGTQYLEEAP---KFLAFPCGLIRGVLSNLGISSIVTASVSSLP 152 (163)
T ss_pred CceEEEecCc---eeeeeecCchhHHHHhcC---CeEEeehhHHHHHHhhCCCceEEeeecCCCC
Confidence 4899999853 233333346666666555 4566899999999999999999998887754
No 240
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=40.61 E-value=35 Score=36.08 Aligned_cols=69 Identities=12% Similarity=0.153 Sum_probs=54.0
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEE--ECCEEcCC-CCcccccCCCCCCEEE
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELED-QRLITDICKRNEAVIH 179 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLi--f~Gk~LeD-~~tL~dy~I~~~svI~ 179 (469)
-.|.||..+|+.+...+..+.||.+++.-|...-..- +...+.|+ |=-++|.| ..||.+-++.|-.++.
T Consensus 306 TsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~-~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlvq 377 (380)
T KOG2086|consen 306 TSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGD-SSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLVQ 377 (380)
T ss_pred ceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCC-cCCceeeeecCCCcccCCcchhHHhccchhhhhhh
Confidence 4678888999999999999999999999999886532 24456665 67788865 7889998887766554
No 241
>PRK07440 hypothetical protein; Provisional
Probab=40.17 E-value=1.8e+02 Score=23.08 Aligned_cols=61 Identities=21% Similarity=0.266 Sum_probs=42.6
Q ss_pred EEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeee
Q 012177 36 IFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (469)
Q Consensus 36 I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (469)
+.|+++|+. +++....||.+|-. ..+++...--+..+|..+.+ ..-.++-+++|+.+.++-
T Consensus 5 m~i~vNG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r--~~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 5 ITLQVNGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHR--QFWEQTQVQPGDRLEIVT 65 (70)
T ss_pred eEEEECCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCH--HHcCceecCCCCEEEEEE
Confidence 344556665 44557788888775 45677666677799999974 456677788999887654
No 242
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=40.00 E-value=27 Score=33.86 Aligned_cols=41 Identities=22% Similarity=0.197 Sum_probs=28.7
Q ss_pred CCEEEEE-Ee-------CCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcc
Q 012177 32 DSILIFL-SV-------GGSVIPMRVMESDSIASVKLRIQSYNGFFVKK 72 (469)
Q Consensus 32 ~~M~I~V-~l-------~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~ 72 (469)
+.+.|.| .+ -|-.+.+.|.+++|..++|+||+++.|++-+.
T Consensus 114 ~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ke 162 (213)
T PF14533_consen 114 GEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDKE 162 (213)
T ss_dssp TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HHH
T ss_pred cceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChhh
Confidence 3577777 33 26678899999999999999999999998544
No 243
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=39.92 E-value=54 Score=36.39 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=42.3
Q ss_pred eeEEEEeecCchHHHHHHHHHHhc--CCCC----CCCceEEEE----CCE-EcCCC-------------CcccccCCCCC
Q 012177 120 KVFEFHVERGRNVGYVKQQIAKKG--REFV----DLKNQELIC----DGE-ELEDQ-------------RLITDICKRNE 175 (469)
Q Consensus 120 k~~~l~V~~~~TV~~LK~kI~~~~--gip~----~~e~QrLif----~Gk-~LeD~-------------~tL~dy~I~~~ 175 (469)
..+.+.|=..+||.++|+||-... +.|. .+++.-|.+ .|+ .|.|. .||..|+|.+|
T Consensus 202 ~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 281 (539)
T PF08337_consen 202 EEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPDG 281 (539)
T ss_dssp TCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--TT
T ss_pred ceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCCC
Confidence 457788888999999999997663 3221 235555543 223 34443 68999999999
Q ss_pred CEEEEEEeeCC
Q 012177 176 AVIHLLVRKSA 186 (469)
Q Consensus 176 svI~Lv~rks~ 186 (469)
+++.|+.++..
T Consensus 282 a~vaLv~k~~~ 292 (539)
T PF08337_consen 282 ATVALVPKQHS 292 (539)
T ss_dssp EEEEEEES---
T ss_pred ceEEEeecccc
Confidence 99999887653
No 244
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=39.70 E-value=97 Score=24.73 Aligned_cols=65 Identities=23% Similarity=0.371 Sum_probs=47.5
Q ss_pred eCCeEEEEEeCCCCcHHHHHHHHHHHhC---CCCcceEEE-EcCeecccCCccccccCccCccceeeeee
Q 012177 40 VGGSVIPMRVMESDSIASVKLRIQSYNG---FFVKKQKLV-FEGRELARSNSRVRDYGLADGNVLHLVLR 105 (469)
Q Consensus 40 l~G~~~~l~V~~sdTV~~LK~kIq~~~G---ip~~~QrLv-f~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (469)
.+|+...++...+...-.+..+--+..| -|++.=.|. -+|..|. -++.+.|||+.++.++.|.++
T Consensus 3 VNGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD-~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 3 VNGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLD-VNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred eCCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEee-ccchhhhccccccceEEEEee
Confidence 3677778888888877777776655544 344444444 3577776 789999999999999988765
No 245
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=37.58 E-value=2.1e+02 Score=24.61 Aligned_cols=74 Identities=22% Similarity=0.227 Sum_probs=45.9
Q ss_pred CCCEEEEEEeC--CeEEEEEeCCCCcHHHHHHHHHHHh----C--CCCc-ceEEEEcCee--cccCCccccccC-----c
Q 012177 31 NDSILIFLSVG--GSVIPMRVMESDSIASVKLRIQSYN----G--FFVK-KQKLVFEGRE--LARSNSRVRDYG-----L 94 (469)
Q Consensus 31 ~~~M~I~V~l~--G~~~~l~V~~sdTV~~LK~kIq~~~----G--ip~~-~QrLvf~Gk~--L~~D~~tL~dyg-----I 94 (469)
...+.|.|... ...+++.+.+++|+.+|.+.+-.+. + -+.. +-.|.-.|+. |. .+.+|.+|. +
T Consensus 15 ~~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~-~~~~L~~~~yIr~cl 93 (108)
T smart00144 15 ANKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLL-GDHPLGSFEYIRNCL 93 (108)
T ss_pred CCeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEe-CCeeeechHHHHHHH
Confidence 45666666333 4789999999999999998877761 1 1112 2344445554 44 455666654 3
Q ss_pred cCccceeeeee
Q 012177 95 ADGNVLHLVLR 105 (469)
Q Consensus 95 ~~gstl~Lvlr 105 (469)
+.+..++|++.
T Consensus 94 ~~~~~~~L~L~ 104 (108)
T smart00144 94 KNGREPHLVLM 104 (108)
T ss_pred hcCCCceEEEE
Confidence 55666666654
No 246
>PF09192 Act-Frag_cataly: Actin-fragmin kinase, catalytic; InterPro: IPR015275 This domain assumes a secondary structure consisting of eight beta strands and 11 alpha-helices, organised in two lobes. It is predominantly found in actin-fragmin kinase, it is the catalytic domain that mediates the phosphorylation of actin []. ; PDB: 1CJA_A.
Probab=37.15 E-value=8.6 Score=38.92 Aligned_cols=139 Identities=23% Similarity=0.303 Sum_probs=64.8
Q ss_pred cccCC--CCcEEEEEeCCC-CeEEEEEecCCCCCCCcCCCCCCCCCCCCCCccCCCcCCCcchhheeeeecccCCCCccc
Q 012177 274 PSSEG--SGGAYFMQDSSG-QKYISVFKPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYS 350 (469)
Q Consensus 274 ~~~~g--s~g~y~~~~~~g-~~~~~vfKP~deEp~~~~nP~g~~~~~~~~~~~~~~~~g~~~~rEvaAylld~~~~~~~~ 350 (469)
++..| |||+||+..-+| .+..+|.|+..- -..|+=||+|-
T Consensus 32 ~s~~g~ns~gv~fv~~f~~~~~~avViK~s~t-----------------------------~~~E~~~s~La-------- 74 (275)
T PF09192_consen 32 HSEHGVNSGGVFFVATFSGSKEEAVVIKFSST-----------------------------IQQEVFASELA-------- 74 (275)
T ss_dssp EEEE-STTS-EEEEEETTE----EEEEE--TT-----------------------------HHHHHHHHHHH--------
T ss_pred hhccccCCCCEEEEEEcCCCceEEEEEecCCc-----------------------------hHHHHHHHHHH--------
Confidence 34445 999999997655 235889997643 47888999988
Q ss_pred ccccccCCCCCCCeEEEEeccccccC----------C-CCCC---CCCCCccceeEeeeecCcCCcccCCCCC-CC----
Q 012177 351 LHDEERGFAGVPPTVMVRCLHKGFNH----------P-NGYK---HDLENVKIGSLQMFVENVGSCEEMGPRA-FP---- 411 (469)
Q Consensus 351 ~~~~~~g~~~VP~T~~v~~~~~~f~~----------~-~~~~---~~~~~~k~GSlQ~fv~~~~~~~~~~~~~-f~---- 411 (469)
..||. -+|--.+++...+-|.- . +... +..+..-.==+++||++. ...++.... |.
T Consensus 75 ---~~Lgv-~~P~~Rii~~~~~E~~e~~~~l~~a~~~~~~l~~~i~~el~~a~~liMeyv~G~-~L~e~~~~~~f~~~~~ 149 (275)
T PF09192_consen 75 ---RWLGV-PTPQMRIIESSSSEFQEMSEALLFATSNDDELGDFICSELDKAFFLIMEYVPGK-PLNELNHKEYFSPEKS 149 (275)
T ss_dssp ---HHCT------EEEEESSSHHHHHHHHHHH----HH-SSS-HHHHHCT-SEEEEEE---EE-ESTT--SS--SHHHHS
T ss_pred ---HHhCC-CCCceeeeecCCHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCC-CccccCcccccCCcch
Confidence 36775 45777777654422110 0 0000 000001112345666642 222332221 22
Q ss_pred ----hhhhhheeeecEEEecCCCCC------------CcEEEecCCCCceEEEeeecCCc
Q 012177 412 ----VDEVHKISVLDIRLANTDRHA------------GNILVSKDEGGQIKLVPIDHGYC 455 (469)
Q Consensus 412 ----~~ev~ki~ilD~~~~N~DR~~------------gN~Lv~~~~~~~~~l~~IDhg~~ 455 (469)
.+++-||.+||+.++|.||-. .|||+....+| ..+..||..++
T Consensus 150 ~~~~~~~LG~ii~fDi~inN~DRlP~~~l~W~n~gN~~Nil~~~~p~~-~~~~~i~~~i~ 208 (275)
T PF09192_consen 150 GEKRLEQLGRIIAFDIFINNFDRLPCRILNWRNEGNPSNILFYEKPNG-WYFSLIDSNIT 208 (275)
T ss_dssp -HHHHHHHHHHHHHHHHHT--SSS----SSS-S---GGGEEEESB--T-T-EEE-S----
T ss_pred HHHHHHHHHhHHhhhhhhcCcccCcccccccCCCCChhheEEeccccc-ceeeecccccc
Confidence 236889999999999999966 68888765344 34677777665
No 247
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=35.76 E-value=1.2e+02 Score=23.22 Aligned_cols=61 Identities=18% Similarity=0.312 Sum_probs=41.1
Q ss_pred EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecc
Q 012177 39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (469)
Q Consensus 39 ~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (469)
.++|+.+.+ ..+.||.+|...+ +++++.-.+..+|+.+.+ ..-.++-+++|+.+.++.-..
T Consensus 2 ~iNg~~~~~--~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~--~~~~~~~L~~gD~veii~~V~ 62 (64)
T TIGR01683 2 TVNGEPVEV--EDGLTLAALLESL----GLDPRRVAVAVNGEIVPR--SEWDDTILKEGDRIEIVTFVG 62 (64)
T ss_pred EECCeEEEc--CCCCcHHHHHHHc----CCCCCeEEEEECCEEcCH--HHcCceecCCCCEEEEEEecc
Confidence 346666555 4677899888764 566666666788988863 234456688899888765443
No 248
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=35.60 E-value=41 Score=26.27 Aligned_cols=61 Identities=20% Similarity=0.205 Sum_probs=44.9
Q ss_pred cceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012177 118 CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 118 ~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv 181 (469)
.| ...+.+....||.+|.+.+..+...........+..+|+...+ .-.+.-+++++.|.++
T Consensus 11 ~g-~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ 71 (77)
T PF02597_consen 11 AG-EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAIL 71 (77)
T ss_dssp HT-EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEE
T ss_pred hC-CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEE
Confidence 45 6678888899999999999888641101366788899999987 2345566788888875
No 249
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=34.75 E-value=2e+02 Score=22.91 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=38.9
Q ss_pred eEEEEeecC-chHHHHHHHHHHhcC-CCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012177 121 VFEFHVERG-RNVGYVKQQIAKKGR-EFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 121 ~~~l~V~~~-~TV~~LK~kI~~~~g-ip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv 181 (469)
...+++... .||.+|++.+.++.. .........+..+++...+ +.-+++++.|.++
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~ 74 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFI 74 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEe
Confidence 356777776 899999999988864 1101234567778888774 4456778888775
No 250
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=34.61 E-value=15 Score=47.02 Aligned_cols=44 Identities=34% Similarity=0.579 Sum_probs=37.2
Q ss_pred hhhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccCCC
Q 012177 413 DEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYS 459 (469)
Q Consensus 413 ~ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p~~ 459 (469)
..+..+.|..|++.=-|||.||||+.+. .|+ ++-||=|+||=..
T Consensus 1932 ~SlA~ySvigYiLglgDRH~~NIliD~~-sG~--viHiDFg~il~~~ 1975 (2105)
T COG5032 1932 RSLAVYSVIGYILGLGDRHPGNILIDRS-SGH--VIHIDFGFILFNA 1975 (2105)
T ss_pred HHHHHHHHHHHHccCCCcCCceEEEEcC-CCc--EEEehHHHHHhcC
Confidence 3688899999999999999999999884 365 8999998887544
No 251
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=34.16 E-value=1.2e+02 Score=24.06 Aligned_cols=45 Identities=16% Similarity=0.037 Sum_probs=34.2
Q ss_pred eeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECC
Q 012177 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG 158 (469)
Q Consensus 112 I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~G 158 (469)
+.|.-++|+...+.+.+..||.++=.++.++.++. ++.-.++..|
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~--~~~~~V~~~~ 47 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLN--PECCDVRLVG 47 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT----CCCEEEEEEE
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCC--HHHEEEEEcC
Confidence 34555789999999999999999999999999987 6666666433
No 252
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=34.08 E-value=1.4e+02 Score=23.82 Aligned_cols=40 Identities=13% Similarity=0.073 Sum_probs=31.4
Q ss_pred eCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcC
Q 012177 40 VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG 79 (469)
Q Consensus 40 l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~G 79 (469)
.+|+...+.|.++.||.+.-.++-++.|+.+..-.++..|
T Consensus 8 P~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 8 PNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp TTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred CCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 3678999999999999999999999999998876665433
No 253
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=33.86 E-value=1.5e+02 Score=26.09 Aligned_cols=52 Identities=12% Similarity=0.188 Sum_probs=40.1
Q ss_pred CCCEEEEEEeCC-----eEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeec
Q 012177 31 NDSILIFLSVGG-----SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGREL 82 (469)
Q Consensus 31 ~~~M~I~V~l~G-----~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L 82 (469)
.+.++|.+.-.| +.-.+.|++++|++.+-..|.+..+++...|-.+|-...-
T Consensus 28 ~~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 28 IRKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred cceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 356666663222 4567789999999999999999999999999887755443
No 254
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=33.44 E-value=2.4e+02 Score=26.13 Aligned_cols=111 Identities=17% Similarity=0.272 Sum_probs=69.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceee----eeeccc-cceeeeeeec
Q 012177 44 VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHL----VLRLSD-LQAITVTTVC 118 (469)
Q Consensus 44 ~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~L----vlrLsd-~m~I~Vkt~~ 118 (469)
.++-++..-+|...|-.+|....|| .|++.+|..|.. ---||...|.-+.- .++..+ .+.+.|++
T Consensus 4 IfP~R~L~~eTtEklLN~l~~i~gI----~R~vIhGp~LPk----~VpyGPa~G~pv~h~~Rk~I~V~g~~veL~V~V-- 73 (150)
T TIGR03260 4 IFPHRLLKAETTEKLLNKLYDLDGI----LRVVIHGQRLPK----KVPYGPARGLPVNHPDRKTIRVKGEDVELRVQV-- 73 (150)
T ss_pred EechhhCCHHHHHHHHHHhhccCCE----EEEEEECCCCCC----CCCCCcccCCCCCCCcceEEEECCEEEEEEEEE--
Confidence 4555677788999999999887775 488999999982 22467766643322 222222 24444443
Q ss_pred ceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccC
Q 012177 119 GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171 (469)
Q Consensus 119 Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~ 171 (469)
|+ +-+++...+.+..+++.-.+.+-.+ --+..|+=+....|+.||-
T Consensus 74 Gr-I~le~~~~~~i~~I~eiC~e~~pF~------y~i~~g~f~r~~~TvtDY~ 119 (150)
T TIGR03260 74 GR-IILELEDEDIVEEIEEICKEMLPFG------YEVRVGKFLRTKPTVTDYI 119 (150)
T ss_pred eE-EEEEecCHHHHHHHHHHHHhhCCCc------eEeeeeeEeecCCchhhhh
Confidence 44 4466666666666665444433322 1234577889999999996
No 255
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=33.34 E-value=2.3e+02 Score=22.58 Aligned_cols=62 Identities=18% Similarity=0.280 Sum_probs=42.9
Q ss_pred EEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeee
Q 012177 35 LIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (469)
Q Consensus 35 ~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (469)
.+++.++|+.+.+ ....|+++|-. +.|++...--...+|..+.+ ..-.++-+++++.+.++-
T Consensus 2 ~m~i~~ng~~~e~--~~~~tv~dLL~----~l~~~~~~vav~vNg~iVpr--~~~~~~~l~~gD~ievv~ 63 (68)
T COG2104 2 PMTIQLNGKEVEI--AEGTTVADLLA----QLGLNPEGVAVAVNGEIVPR--SQWADTILKEGDRIEVVR 63 (68)
T ss_pred cEEEEECCEEEEc--CCCCcHHHHHH----HhCCCCceEEEEECCEEccc--hhhhhccccCCCEEEEEE
Confidence 4555566666554 45588988876 46788777777799999973 455667778888776543
No 256
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=33.16 E-value=1.9e+02 Score=22.40 Aligned_cols=63 Identities=13% Similarity=0.119 Sum_probs=46.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCC--CCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 44 VIPMRVMESDSIASVKLRIQSYNGF--FVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 44 ~~~l~V~~sdTV~~LK~kIq~~~Gi--p~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
...+.+....||.+|.+.+..+..- ....-.+..+|+... + .-.++-+++++.+.+....+++
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~-~--~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVP-D--DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEG-G--GTTTSBEETTEEEEEEESTSTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcC-C--ccCCcCcCCCCEEEEECCCCCC
Confidence 6677888999999999999888521 114456778898887 4 3556777889999887766543
No 257
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=33.11 E-value=26 Score=38.82 Aligned_cols=37 Identities=30% Similarity=0.415 Sum_probs=28.3
Q ss_pred eecEEEecCCCCCCcEEEecCCCCceEEEeeecCCcc
Q 012177 420 VLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456 (469)
Q Consensus 420 ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~ 456 (469)
||.--+.-+|=|.|||||..+..+..+++.||.|++-
T Consensus 276 if~~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg 312 (537)
T PRK04750 276 VFRDGFFHADMHPGNIFVSYDPPENPRYIALDFGIVG 312 (537)
T ss_pred HHhCCeeeCCCChHHeEEecCCCCCCeEEEEecceEE
Confidence 3556788999999999998862223358899999864
No 258
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=33.03 E-value=1.1e+02 Score=24.07 Aligned_cols=40 Identities=23% Similarity=0.145 Sum_probs=32.0
Q ss_pred cceeEEEEee-cCchHHHHHHHHHHhcCCCCCCCceEEEECCE
Q 012177 118 CGKVFEFHVE-RGRNVGYVKQQIAKKGREFVDLKNQELICDGE 159 (469)
Q Consensus 118 ~Gk~~~l~V~-~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk 159 (469)
.|....+.+. +..+..+|+++|+++.+.. .....|.|.+.
T Consensus 8 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~--~~~~~l~y~D~ 48 (81)
T cd05992 8 GGEIRRFVVVSRSISFEDLRSKIAEKFGLD--AVSFKLKYPDE 48 (81)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHHHhCCC--CCcEEEEeeCC
Confidence 3577888888 8899999999999999976 45667777554
No 259
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=32.63 E-value=1.4e+02 Score=23.96 Aligned_cols=35 Identities=14% Similarity=-0.036 Sum_probs=30.6
Q ss_pred eEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEE
Q 012177 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI 155 (469)
Q Consensus 121 ~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLi 155 (469)
..++.|..+.|+.+|-+.+.++.++..++.+-.|+
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 67799999999999999999999985467788885
No 260
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=32.49 E-value=2.4e+02 Score=22.45 Aligned_cols=32 Identities=16% Similarity=-0.012 Sum_probs=27.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCC--CCcceEE
Q 012177 44 VIPMRVMESDSIASVKLRIQSYNGF--FVKKQKL 75 (469)
Q Consensus 44 ~~~l~V~~sdTV~~LK~kIq~~~Gi--p~~~QrL 75 (469)
..++.|..+.|+.+|-..+.++.++ .+..-.|
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L 51 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCL 51 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEE
Confidence 8899999999999999999999999 2333455
No 261
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=32.37 E-value=1.6e+02 Score=31.88 Aligned_cols=75 Identities=15% Similarity=0.174 Sum_probs=55.5
Q ss_pred EEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCC----CCcceE--EE-EcCeecccCCccccccCccCccceeeeeec
Q 012177 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGF----FVKKQK--LV-FEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (469)
Q Consensus 34 M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gi----p~~~Qr--Lv-f~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (469)
-+|+|.-..+...+-+..+..|+++--.|.+..+- +..... |. .+|.+|+ .+.+|.+.+|.||++++|..+.
T Consensus 3 ~RVtV~~~~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~-~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 3 CRVTVLAGRRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLD-PDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEEEeeCCeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCC-CCCCHHHcCCCCCCeEEEeeCC
Confidence 35677445566777778899999999998888764 112222 22 5688997 8999999999999999998755
Q ss_pred ccc
Q 012177 107 SDL 109 (469)
Q Consensus 107 sd~ 109 (469)
...
T Consensus 82 ~~~ 84 (452)
T TIGR02958 82 ATE 84 (452)
T ss_pred CCC
Confidence 433
No 262
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=31.67 E-value=16 Score=37.59 Aligned_cols=60 Identities=10% Similarity=0.239 Sum_probs=0.0
Q ss_pred ceeeeeeecceeEEEEee---c--CchHHHHHHHHHH----------hcCCCCCCCceE-----EEECCEEcCCCCcccc
Q 012177 110 QAITVTTVCGKVFEFHVE---R--GRNVGYVKQQIAK----------KGREFVDLKNQE-----LICDGEELEDQRLITD 169 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~---~--~~TV~~LK~kI~~----------~~gip~~~e~Qr-----Lif~Gk~LeD~~tL~d 169 (469)
+.|.+|.+....+.+.+. + +.+|.++|..+++ +.++| .+..+ |.|+-+.+.|.++|.|
T Consensus 79 ItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp--~dKik~~~~~lL~~kkPv~~~ktl~e 156 (309)
T PF12754_consen 79 ITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVP--LDKIKNFRCRLLYKKKPVGDSKTLAE 156 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCC--HHHhhhhhhhheecCccCCCcCcHHH
Confidence 444445544444333322 2 4799999999999 77877 77777 9999999999999988
Q ss_pred cC
Q 012177 170 IC 171 (469)
Q Consensus 170 y~ 171 (469)
.-
T Consensus 157 ~l 158 (309)
T PF12754_consen 157 VL 158 (309)
T ss_dssp --
T ss_pred HH
Confidence 64
No 263
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=31.06 E-value=2.2e+02 Score=21.77 Aligned_cols=55 Identities=13% Similarity=0.140 Sum_probs=35.5
Q ss_pred ecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012177 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 117 ~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv 181 (469)
.+|+.+.+ +. .|+.+|.+.+ ++. ++...+-.+++.+. ...-.+.-+++++.|.++
T Consensus 5 ~Ng~~~~~--~~-~tl~~Ll~~l----~~~--~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv 59 (65)
T PRK06488 5 VNGETLQT--EA-TTLALLLAEL----DYE--GNWLATAVNGELVH-KEARAQFVLHEGDRIEIL 59 (65)
T ss_pred ECCeEEEc--Cc-CcHHHHHHHc----CCC--CCeEEEEECCEEcC-HHHcCccccCCCCEEEEE
Confidence 56777766 33 5888877654 444 45556778888876 222235557888888875
No 264
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=31.04 E-value=84 Score=25.93 Aligned_cols=36 Identities=11% Similarity=0.204 Sum_probs=31.8
Q ss_pred eEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECC
Q 012177 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG 158 (469)
Q Consensus 121 ~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~G 158 (469)
++.+.+.+..+...|.++|+++...+ ++.-.|.|.-
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~--~~~~~LSY~~ 43 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQ--AQRGQLSYRA 43 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCC--hhhcEEEecC
Confidence 56788999999999999999999987 8888999843
No 265
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=30.39 E-value=1.7e+02 Score=22.39 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=36.7
Q ss_pred ecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012177 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 117 ~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv 181 (469)
.+|+.+.+ +...||.+|.+++. ++ .+...+..+|+.+.... -.++-+++++.|.++
T Consensus 4 iNg~~~~~--~~~~tv~~ll~~l~----~~--~~~i~V~vNg~~v~~~~-~~~~~L~~gD~V~ii 59 (65)
T cd00565 4 VNGEPREV--EEGATLAELLEELG----LD--PRGVAVALNGEIVPRSE-WASTPLQDGDRIEIV 59 (65)
T ss_pred ECCeEEEc--CCCCCHHHHHHHcC----CC--CCcEEEEECCEEcCHHH-cCceecCCCCEEEEE
Confidence 45666544 46778888876653 44 67778889999886321 112457788888875
No 266
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=30.25 E-value=2.3e+02 Score=23.10 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=35.1
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCe
Q 012177 41 GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGR 80 (469)
Q Consensus 41 ~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk 80 (469)
+|+...+.+.++.||.++-.++-++.|+....=.++..|.
T Consensus 8 dg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 8 DGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 6788899999999999999999999999988877776554
No 267
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=30.14 E-value=1.7e+02 Score=24.52 Aligned_cols=45 Identities=9% Similarity=0.002 Sum_probs=35.7
Q ss_pred eeeeee-cceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCE
Q 012177 112 ITVTTV-CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGE 159 (469)
Q Consensus 112 I~Vkt~-~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk 159 (469)
|.||.. .|..+.+.|.++.+-.+|.++|.+++++. ....|-|...
T Consensus 3 ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~---~~~~iKykDE 48 (86)
T cd06408 3 IRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK---RRLKIKMKDD 48 (86)
T ss_pred EEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC---CceEEEEEcC
Confidence 444443 67888999999999999999999999964 5666667665
No 268
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=29.39 E-value=98 Score=26.25 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=44.3
Q ss_pred ceeeeeee-cceeEEEEeecCchHHHHHHHHHHhc--CC-CCCCC-ceEEEECCEE--cCCCCccccc-----CCCCCCE
Q 012177 110 QAITVTTV-CGKVFEFHVERGRNVGYVKQQIAKKG--RE-FVDLK-NQELICDGEE--LEDQRLITDI-----CKRNEAV 177 (469)
Q Consensus 110 m~I~Vkt~-~Gk~~~l~V~~~~TV~~LK~kI~~~~--gi-p~~~e-~QrLif~Gk~--LeD~~tL~dy-----~I~~~sv 177 (469)
+.|.|... .+..+++.++.+.|+.+|-+++-.+. +. +...+ +-.|--.|.+ |..+..|.+| |+..+..
T Consensus 17 i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~ 96 (106)
T PF00794_consen 17 IKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKD 96 (106)
T ss_dssp EEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--
T ss_pred EEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCC
Confidence 34445544 56789999999999999999887771 11 11112 4555555544 5667778777 3567777
Q ss_pred EEEEEe
Q 012177 178 IHLLVR 183 (469)
Q Consensus 178 I~Lv~r 183 (469)
++|.+.
T Consensus 97 ~~L~Lv 102 (106)
T PF00794_consen 97 PHLVLV 102 (106)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 777654
No 269
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=29.29 E-value=2.8e+02 Score=21.66 Aligned_cols=60 Identities=20% Similarity=0.185 Sum_probs=40.6
Q ss_pred EEeCCeEEEEEeCCC-CcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeee
Q 012177 38 LSVGGSVIPMRVMES-DSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (469)
Q Consensus 38 V~l~G~~~~l~V~~s-dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (469)
|.++|+.+.+ ... .||.+|-. ..++++..--+..+|..+.+ ..-.++-+++|+.+.++--
T Consensus 3 I~vNG~~~~~--~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r--~~w~~~~L~~gD~iEIv~~ 63 (67)
T PRK07696 3 LKINGNQIEV--PESVKTVAELLT----HLELDNKIVVVERNKDILQK--DDHTDTSVFDGDQIEIVTF 63 (67)
T ss_pred EEECCEEEEc--CCCcccHHHHHH----HcCCCCCeEEEEECCEEeCH--HHcCceecCCCCEEEEEEE
Confidence 4556776654 344 46776665 45677666667799999984 4556677889998887543
No 270
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=29.20 E-value=3e+02 Score=21.95 Aligned_cols=57 Identities=7% Similarity=0.063 Sum_probs=36.7
Q ss_pred eeEEEEeecCchHHHHHHHHHHhcCCCCC-CCceEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012177 120 KVFEFHVERGRNVGYVKQQIAKKGREFVD-LKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 120 k~~~l~V~~~~TV~~LK~kI~~~~gip~~-~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv 181 (469)
....+++....||++|++.+......... .....+..+|+... .++-+++++.|.++
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~ 76 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAII 76 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEe
Confidence 44567777888999999999776521100 01224667888764 34456778888774
No 271
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=29.12 E-value=2.2e+02 Score=22.44 Aligned_cols=39 Identities=10% Similarity=0.098 Sum_probs=32.2
Q ss_pred cceeEE-EEeecCchHHHHHHHHHHhcCCCCCCCceEEEECC
Q 012177 118 CGKVFE-FHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG 158 (469)
Q Consensus 118 ~Gk~~~-l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~G 158 (469)
.+.... +.+.+..+..+|+++|+++.+.. .....|.|.+
T Consensus 9 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~--~~~~~l~Y~D 48 (84)
T PF00564_consen 9 GGDIRRIISLPSDVSFDDLRSKIREKFGLL--DEDFQLKYKD 48 (84)
T ss_dssp TTEEEEEEEECSTSHHHHHHHHHHHHHTTS--TSSEEEEEEE
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHHHhCCC--CccEEEEeeC
Confidence 445555 88999999999999999999976 6788888844
No 272
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=28.91 E-value=68 Score=32.70 Aligned_cols=36 Identities=25% Similarity=0.562 Sum_probs=28.6
Q ss_pred cCCCCchHHHHHHHHHHHHHHHcCCCCccccCCCCcEEEEEeCCCC
Q 012177 246 ESNFKLPLMIKRLISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQ 291 (469)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~gs~g~y~~~~~~g~ 291 (469)
...+-+--....||+++.+||.+ +|||||.+...|.
T Consensus 120 G~gvyLv~~~a~LvqdIi~AlNr----------TGGSyy~~G~ngg 155 (305)
T PF04639_consen 120 GVGVYLVFSAATLVQDIIDALNR----------TGGSYYYRGNNGG 155 (305)
T ss_pred eeEEEEEEEHHHHHHHHHHHHHh----------CCCeeEEEccCCC
Confidence 34445555678999999999987 8999999987763
No 273
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=28.79 E-value=2.6e+02 Score=21.16 Aligned_cols=62 Identities=16% Similarity=0.224 Sum_probs=38.4
Q ss_pred EEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeeccc
Q 012177 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 38 V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (469)
|+++|+.+.+ .+..|+.++.+.+. ++ ..-.+..+|+...+ ..-.+.-+++|+.+.++.-..+
T Consensus 3 i~vNg~~~~~--~~~~tl~~ll~~l~----~~-~~~~v~vN~~~v~~--~~~~~~~L~~gD~vei~~~v~G 64 (65)
T PRK06944 3 IQLNQQTLSL--PDGATVADALAAYG----AR-PPFAVAVNGDFVAR--TQHAARALAAGDRLDLVQPVAG 64 (65)
T ss_pred EEECCEEEEC--CCCCcHHHHHHhhC----CC-CCeEEEECCEEcCc--hhcccccCCCCCEEEEEeeccC
Confidence 4556666544 56789998887653 33 23355678888763 2233445778998887654443
No 274
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=28.64 E-value=2.4e+02 Score=22.73 Aligned_cols=58 Identities=16% Similarity=0.251 Sum_probs=37.8
Q ss_pred eeEEEEeecCchHHHHHHHHHHhcCCCC----C-----CCceEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012177 120 KVFEFHVERGRNVGYVKQQIAKKGREFV----D-----LKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 120 k~~~l~V~~~~TV~~LK~kI~~~~gip~----~-----~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv 181 (469)
....+++. ..||.+|.+.+.++..... + -....+..+|+....... .-+++++.|.++
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~ 82 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIF 82 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEe
Confidence 34567776 7899999999988864100 0 123566678887754321 456788888875
No 275
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=27.68 E-value=2.1e+02 Score=22.93 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=26.4
Q ss_pred CeEEEEEeCCCCcHHHHHHHHHHHhCCC
Q 012177 42 GSVIPMRVMESDSIASVKLRIQSYNGFF 69 (469)
Q Consensus 42 G~~~~l~V~~sdTV~~LK~kIq~~~Gip 69 (469)
+...++.|..++|..+|-..+.++.++.
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~ 39 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLD 39 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCc
Confidence 6789999999999999999999999998
No 276
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=27.61 E-value=2.9e+02 Score=21.31 Aligned_cols=62 Identities=8% Similarity=0.111 Sum_probs=40.4
Q ss_pred EEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecc
Q 012177 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (469)
Q Consensus 38 V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (469)
|+.+|+.+.+ ....||.+|... .++....-.+..++..+.+ ..-.++-+++|+.+.++--..
T Consensus 3 i~vNg~~~~~--~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~r--~~w~~~~L~~gD~Ieii~~v~ 64 (66)
T PRK08053 3 ILFNDQPMQC--AAGQTVHELLEQ----LNQLQPGAALAINQQIIPR--EQWAQHIVQDGDQILLFQVIA 64 (66)
T ss_pred EEECCeEEEc--CCCCCHHHHHHH----cCCCCCcEEEEECCEEeCh--HHcCccccCCCCEEEEEEEcc
Confidence 3456666665 466788888865 3444444566788988874 334555688899887765443
No 277
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=26.26 E-value=1.4e+02 Score=24.56 Aligned_cols=51 Identities=16% Similarity=0.249 Sum_probs=34.4
Q ss_pred chHHHHHHHHHHhcCCCCCCCceEEEE--CCEEcCCCCcccccC-CCCCCEEEEEEeeCC
Q 012177 130 RNVGYVKQQIAKKGREFVDLKNQELIC--DGEELEDQRLITDIC-KRNEAVIHLLVRKSA 186 (469)
Q Consensus 130 ~TV~~LK~kI~~~~gip~~~e~QrLif--~Gk~LeD~~tL~dy~-I~~~svI~Lv~rks~ 186 (469)
.+..+|+.|..++.+++ .+..+|+. +|.+++|+ +|- -=++.+..|++++..
T Consensus 21 ~sL~eL~~K~~~~l~~~--~~~~~lvL~eDGT~VddE----eyF~tLp~nT~lm~L~~ge 74 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLP--EEPVRLVLEEDGTEVDDE----EYFQTLPDNTVLMLLEKGE 74 (78)
T ss_dssp SSHHHHHHHHHHHHT-S--SSTCEEEETTTTCBESSC----HHHCCSSSSEEEEEEESSS
T ss_pred CCHHHHHHHHHHHhCCC--CcCcEEEEeCCCcEEccH----HHHhhCCCCCEEEEECCCC
Confidence 68999999999999987 57777776 67777653 332 114455566666544
No 278
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=26.15 E-value=1.5e+02 Score=22.61 Aligned_cols=59 Identities=19% Similarity=0.165 Sum_probs=38.5
Q ss_pred eeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012177 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 112 I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv 181 (469)
|.|.+.+|+... +....|+.++=+.|....+-. -.--..+|+..+ -++-+++++++.++
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~~~----~~~A~Vng~~vd-----l~~~L~~~d~v~ii 59 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIHSSLAKR----AVAAKVNGQLVD-----LDHPLEDGDVVEII 59 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHSHHHHHC----EEEEEETTEEEE-----TTSBB-SSEEEEEE
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHCHHHHhh----eeEEEEcCEECC-----CCCCcCCCCEEEEE
Confidence 456678888765 668889999999998775421 122335777665 34456677777763
No 279
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=26.13 E-value=90 Score=36.26 Aligned_cols=53 Identities=17% Similarity=0.290 Sum_probs=43.8
Q ss_pred CCeEEEEEeCC-CCcHHHHHHHHHHHhCCCCcceEEEE-cCeecccCCccccccCc
Q 012177 41 GGSVIPMRVME-SDSIASVKLRIQSYNGFFVKKQKLVF-EGRELARSNSRVRDYGL 94 (469)
Q Consensus 41 ~G~~~~l~V~~-sdTV~~LK~kIq~~~Gip~~~QrLvf-~Gk~L~~D~~tL~dygI 94 (469)
.|++++++... ..|+++||..|+.+.|+....|.++- +|..+. -++.|..|.-
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecma-adkrl~e~St 57 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMA-ADKRLAEIST 57 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcc-cccchhhhcc
Confidence 47788888874 78999999999999999988888775 566676 7888888873
No 280
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=25.77 E-value=3e+02 Score=29.60 Aligned_cols=72 Identities=13% Similarity=0.103 Sum_probs=53.4
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEE----CCEE--cCCCCcccccCCCCCCEEEEEE
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC----DGEE--LEDQRLITDICKRNEAVIHLLV 182 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif----~Gk~--LeD~~tL~dy~I~~~svI~Lv~ 182 (469)
|.+.+|...|. ..++++++++.+.|-.+|-.-.....++++..++- .|.. +...+++.|.+++.|..+.|..
T Consensus 1 Mi~rfRsk~G~-~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 1 MIFRFRSKEGQ-RRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred CeEEEecCCCc-eeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 34566666654 57899999999999999877765444566666664 3442 3457889999999999999876
No 281
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=25.75 E-value=1.5e+02 Score=34.56 Aligned_cols=75 Identities=13% Similarity=0.260 Sum_probs=55.3
Q ss_pred cceeEEEEeec-CchHHHHHHHHHHhcCCCCCCCceEEEE-CCEEcCCCCcccccC--CCCCCEEEEEEeeCCcccCCCC
Q 012177 118 CGKVFEFHVER-GRNVGYVKQQIAKKGREFVDLKNQELIC-DGEELEDQRLITDIC--KRNEAVIHLLVRKSAKVRAKPV 193 (469)
Q Consensus 118 ~Gk~~~l~V~~-~~TV~~LK~kI~~~~gip~~~e~QrLif-~Gk~LeD~~tL~dy~--I~~~svI~Lv~rks~kv~~~~~ 193 (469)
.|..++++.+. ..|+.+||..|+++.|+. ..+|.++- +|.-+.-.+.|..|+ -.+.+.|.++-.......-.+.
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~a--Iq~~tfl~egGecmaadkrl~e~StaGTdTnPiffFnkem~lcde~~a 80 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHA--IQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFFNKEMGLCDENHA 80 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchh--hceeeeeecCCcCcccccchhhhccccCCCCceEEeehhhccccCCCC
Confidence 57788888776 459999999999999987 67776664 677788788899998 3566788887555544433333
Q ss_pred c
Q 012177 194 Q 194 (469)
Q Consensus 194 ~ 194 (469)
+
T Consensus 81 ~ 81 (1424)
T KOG4572|consen 81 G 81 (1424)
T ss_pred C
Confidence 3
No 282
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=25.28 E-value=29 Score=44.78 Aligned_cols=43 Identities=28% Similarity=0.419 Sum_probs=35.8
Q ss_pred hhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccCCC
Q 012177 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYS 459 (469)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p~~ 459 (469)
.|.-=.|+=|+++=.|||+-||||... ..+++.||-|.+|-..
T Consensus 2616 svA~sS~VGyILGLGDRH~qNILid~~---taEviHIDlGiAFEQG 2658 (2806)
T KOG0892|consen 2616 SVAASSMVGYILGLGDRHGQNILIDQQ---TAEVIHIDLGIAFEQG 2658 (2806)
T ss_pred hHHHHHHHHHHhcccchhhhheeeccc---ccceEEEeeeeehhcC
Confidence 466667889999999999999999874 4569999999998543
No 283
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=25.06 E-value=2e+02 Score=23.09 Aligned_cols=37 Identities=24% Similarity=0.158 Sum_probs=30.8
Q ss_pred ceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEE
Q 012177 119 GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI 155 (469)
Q Consensus 119 Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLi 155 (469)
+...++.|..++|..+|-+.+.++.++..++++-.|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 5667799999999999999999999976446666666
No 284
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=24.93 E-value=1.3e+02 Score=26.98 Aligned_cols=55 Identities=11% Similarity=0.219 Sum_probs=35.0
Q ss_pred eCC-CCcHHHHHHHHHHH----hCCCCcc------eEEEEc-----------------Ceec--ccCCccccccCccCcc
Q 012177 49 VME-SDSIASVKLRIQSY----NGFFVKK------QKLVFE-----------------GREL--ARSNSRVRDYGLADGN 98 (469)
Q Consensus 49 V~~-sdTV~~LK~kIq~~----~Gip~~~------QrLvf~-----------------Gk~L--~~D~~tL~dygI~~gs 98 (469)
|+. +.||.+|++.+.+. .|+++-+ .+++.. ...| .+++.+|.++||.++.
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 776 88998888776655 5555433 233322 1345 2367888888888888
Q ss_pred ceeee
Q 012177 99 VLHLV 103 (469)
Q Consensus 99 tl~Lv 103 (469)
.|.+.
T Consensus 102 EiSfF 106 (122)
T PF10209_consen 102 EISFF 106 (122)
T ss_pred eeeee
Confidence 77654
No 285
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=24.15 E-value=1.9e+02 Score=23.83 Aligned_cols=50 Identities=14% Similarity=0.208 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHhcCCCCCCCceEEE--ECCEEcCCCCcccccC--CCCCCEEEEEEeeCC
Q 012177 130 RNVGYVKQQIAKKGREFVDLKNQELI--CDGEELEDQRLITDIC--KRNEAVIHLLVRKSA 186 (469)
Q Consensus 130 ~TV~~LK~kI~~~~gip~~~e~QrLi--f~Gk~LeD~~tL~dy~--I~~~svI~Lv~rks~ 186 (469)
.+.++|+.|.+++.+++ ....+|+ -+|.+++|+ ||- +.+ .+..|++.+..
T Consensus 21 ~sL~eL~~K~~~~l~l~--~~~~~lvL~eDGTeVddE----eYF~tLp~-nT~l~~l~~gq 74 (78)
T cd01615 21 SSLEELLSKACEKLKLP--SAPVTLVLEEDGTEVDDE----EYFQTLPD-NTVLMLLEPGQ 74 (78)
T ss_pred CCHHHHHHHHHHHcCCC--CCCeEEEEeCCCcEEccH----HHHhcCCC-CcEEEEECCCC
Confidence 58999999999999986 4555555 489998773 442 333 44455555444
No 286
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=23.09 E-value=1.7e+02 Score=23.79 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=35.9
Q ss_pred eecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCE
Q 012177 116 TVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGE 159 (469)
Q Consensus 116 t~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk 159 (469)
-.+|....+.+.+..||.++=.++.++-|+. ++.-.++.-|.
T Consensus 6 LPdg~~T~V~vrpG~ti~d~L~kllekRgl~--~~~~~vf~~g~ 47 (73)
T cd01817 6 LPDGSTTVVPTRPGESIRDLLSGLCEKRGIN--YAAVDLFLVGG 47 (73)
T ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHHcCCC--hhHEEEEEecC
Confidence 4678888999999999999999999999987 77777776554
No 287
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=23.06 E-value=1.1e+02 Score=26.30 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=23.1
Q ss_pred EEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012177 153 ELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (469)
Q Consensus 153 rLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks~ 186 (469)
.|-|.|++|..+.+|.||.-+| ..-.++++-+.
T Consensus 3 ~LW~aGK~l~~~k~l~dy~GkN-EKtKiivKl~~ 35 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDYIGKN-EKTKIIVKLQK 35 (98)
T ss_pred eEEeccccccCCCcHHHhcCCC-cceeEEEEecc
Confidence 5889999999999999996433 33344444333
No 288
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=22.96 E-value=2.8e+02 Score=22.78 Aligned_cols=52 Identities=17% Similarity=0.195 Sum_probs=39.3
Q ss_pred ceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEE-ECCEEcCCCCcccccCCCCCCEEEEE
Q 012177 119 GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI-CDGEELEDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 119 Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLi-f~Gk~LeD~~tL~dy~I~~~svI~Lv 181 (469)
+..+.+.++...||+++- +..|+| ..+..++ .||+..+ -+|-+++|+.|.+.
T Consensus 22 ~~~~~~~~~~~~tvkd~I----EsLGVP--~tEV~~i~vNG~~v~-----~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVI----ESLGVP--HTEVGLILVNGRPVD-----FDYRLKDGDRVAVY 74 (81)
T ss_pred CCceEEecCCCCcHHHHH----HHcCCC--hHHeEEEEECCEECC-----CcccCCCCCEEEEE
Confidence 457788888999998864 466887 6666555 5999887 46778889999875
No 289
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.14 E-value=1.2e+02 Score=31.79 Aligned_cols=55 Identities=11% Similarity=-0.028 Sum_probs=42.7
Q ss_pred EEeecCchHHHHHHHHHHhcCCCCCCCceEEEE---CCEE-----cCCCCcccccCCCCCCEEEE
Q 012177 124 FHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---DGEE-----LEDQRLITDICKRNEAVIHL 180 (469)
Q Consensus 124 l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif---~Gk~-----LeD~~tL~dy~I~~~svI~L 180 (469)
.-|.-..||-+++.++..+-|+. +..++|+| +|+. ++-...|..|+|++|+.+.+
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk--~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lv 414 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVK--FTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLV 414 (418)
T ss_pred eEEEeehHHHHHHHHhccccccc--cceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeee
Confidence 44556679999999999999987 89999998 4444 23356677888888888765
No 290
>KOG4261 consensus Talin [Cytoskeleton]
Probab=21.83 E-value=2.4e+02 Score=32.76 Aligned_cols=122 Identities=17% Similarity=0.155 Sum_probs=86.6
Q ss_pred EEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCC---CcceEEEE------cCeecccCCccccccCccCccceeeeeec
Q 012177 36 IFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFF---VKKQKLVF------EGRELARSNSRVRDYGLADGNVLHLVLRL 106 (469)
Q Consensus 36 I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip---~~~QrLvf------~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (469)
+.|...+-.-+|...|+.+|.+--.-|.++.-.- +..-.|+. .|-.|+ ..++|.+|-+.+++++.-.
T Consensus 6 l~i~~~~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle-~grt~~~y~~~n~d~~ey~--- 81 (1003)
T KOG4261|consen 6 LKISSANVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLE-AGRTLDYYMLRNGDTLEYK--- 81 (1003)
T ss_pred EEEEecceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeec-CCccHHHHHHhcccccchh---
Confidence 4444446678888899999998777777662211 22233332 255676 7888888888888877643
Q ss_pred cccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcC
Q 012177 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELE 162 (469)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~Le 162 (469)
.....+.|+.++|..-++.|+-+.+|..|---|..+.||. ..++..|+-...++.
T Consensus 82 ~k~r~lkvrmldg~vkti~vd~sq~v~~L~~~ic~~igIt-nyeeyslvre~~~~~ 136 (1003)
T KOG4261|consen 82 RKQRPLKVRMLDGAVKTIMVDDSQPVSQLMMTICNKIGIT-NYEEYSLVREDIEEQ 136 (1003)
T ss_pred hhcccceeeecccccceeeecccccHHHHHHHHHhccCcc-chhhhhhhHHHHHHh
Confidence 3345677899999999999999999999999999999976 355666665555544
No 291
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=21.63 E-value=2.4e+02 Score=24.04 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=32.5
Q ss_pred eCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEc
Q 012177 40 VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE 78 (469)
Q Consensus 40 l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~ 78 (469)
..|.+.-+.|+.+.|..+|+.++.+..++... ..|.|.
T Consensus 20 ~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky~ 57 (97)
T cd06410 20 VGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKYQ 57 (97)
T ss_pred cCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEEE
Confidence 47889999999999999999999999998865 566553
No 292
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=21.00 E-value=2.5e+02 Score=23.87 Aligned_cols=39 Identities=13% Similarity=0.006 Sum_probs=32.5
Q ss_pred eeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEE
Q 012177 115 TTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC 156 (469)
Q Consensus 115 kt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif 156 (469)
+-..|++..+.|+++.+-.+|++++.+..++. .. ..|-|
T Consensus 18 ~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~--~~-~~lky 56 (97)
T cd06410 18 RYVGGETRIVSVDRSISFKELVSKLSELFGAG--VV-VTLKY 56 (97)
T ss_pred EEcCCceEEEEEcCCCCHHHHHHHHHHHhCCC--Cc-eEEEE
Confidence 44678999999999999999999999999876 33 56655
No 293
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=20.44 E-value=1.8e+02 Score=24.44 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=33.9
Q ss_pred EEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceE
Q 012177 35 LIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQK 74 (469)
Q Consensus 35 ~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~Qr 74 (469)
.|-| -.+|.+++++|..+++..++=+.++.+.|+|.+-+.
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~ 43 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQN 43 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHh
Confidence 4455 346899999999999999999999999999977653
No 294
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=20.29 E-value=14 Score=34.61 Aligned_cols=37 Identities=30% Similarity=0.454 Sum_probs=24.7
Q ss_pred EecCCCCCCCcCCCCCCCCCCCCCCccCCCcCCCcchhheeeeeccc
Q 012177 297 FKPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDH 343 (469)
Q Consensus 297 fKP~deEp~~~~nP~g~~~~~~~~~~~~~~~~g~~~~rEvaAylld~ 343 (469)
|.|.|..|+...--.+.-. ..=|+||.||++-+||-.
T Consensus 122 ~a~~dAh~~v~~~a~~Vt~----------~~GG~GAvREv~dlil~a 158 (170)
T COG1778 122 VAVADAHPLLKQRADYVTS----------KKGGEGAVREVCDLILQA 158 (170)
T ss_pred ccccccCHHHHHhhHhhhh----------ccCcchHHHHHHHHHHHc
Confidence 7788887776543333100 112899999999999864
Done!