Query 012177
Match_columns 469
No_of_seqs 354 out of 2181
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 04:16:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u30_A Ubiquitin, linear DI-ub 100.0 7.5E-32 2.6E-36 249.2 18.3 155 27-184 14-169 (172)
2 3rt3_B Ubiquitin-like protein 100.0 2.4E-31 8.3E-36 242.3 18.7 150 33-185 2-155 (159)
3 3b08_A Polyubiquitin-C, ubiqui 100.0 3.2E-29 1.1E-33 225.0 19.3 149 34-185 1-150 (152)
4 2kdi_A Ubiquitin, vacuolar pro 99.7 5.2E-18 1.8E-22 146.9 5.0 103 31-134 7-113 (114)
5 4eew_A Large proline-rich prot 99.7 1.7E-16 5.7E-21 130.3 9.2 88 93-183 1-88 (88)
6 3phx_B Ubiquitin-like protein 99.7 2.4E-16 8.2E-21 126.6 9.6 77 31-108 2-79 (79)
7 1yx5_B Ubiquitin; proteasome, 99.6 4.8E-16 1.6E-20 130.4 9.4 91 34-125 1-92 (98)
8 3dbh_I NEDD8; cell cycle, acti 99.6 5.8E-16 2E-20 126.5 9.5 82 27-109 6-88 (88)
9 3plu_A Ubiquitin-like modifier 99.6 6.4E-16 2.2E-20 128.7 9.1 78 102-181 14-91 (93)
10 4fbj_B NEDD8; effector-HOST ta 99.6 9.6E-16 3.3E-20 126.3 8.8 76 34-110 1-77 (88)
11 3plu_A Ubiquitin-like modifier 99.6 9.5E-16 3.3E-20 127.7 8.7 74 30-104 18-92 (93)
12 3v6c_B Ubiquitin; structural g 99.6 1.4E-15 4.9E-20 125.8 9.7 78 29-107 13-91 (91)
13 3phx_B Ubiquitin-like protein 99.6 1.5E-15 5.2E-20 121.9 9.6 75 108-184 3-77 (79)
14 4hcn_B Polyubiquitin, ubiquiti 99.6 1.8E-15 6.2E-20 127.1 9.0 81 28-109 17-98 (98)
15 2kk8_A Uncharacterized protein 99.6 2.4E-15 8.2E-20 123.2 8.9 75 31-106 8-84 (84)
16 2dzi_A Ubiquitin-like protein 99.6 5.2E-15 1.8E-19 118.8 10.2 78 28-106 2-80 (81)
17 2uyz_B Small ubiquitin-related 99.6 1.8E-15 6.1E-20 121.5 7.5 77 32-109 2-79 (79)
18 2faz_A Ubiquitin-like containi 99.6 4.3E-15 1.5E-19 118.8 9.3 76 108-185 1-78 (78)
19 4dwf_A HLA-B-associated transc 99.6 4.9E-15 1.7E-19 122.0 9.8 77 31-109 3-80 (90)
20 1wh3_A 59 kDa 2'-5'-oligoadeny 99.6 6.1E-15 2.1E-19 120.4 10.0 80 30-110 4-84 (87)
21 2faz_A Ubiquitin-like containi 99.6 5E-15 1.7E-19 118.5 9.1 75 32-107 1-78 (78)
22 1wy8_A NP95-like ring finger p 99.6 6.6E-15 2.3E-19 120.8 10.1 81 29-110 3-86 (89)
23 1ndd_A NEDD8, protein (ubiquit 99.6 5.1E-15 1.7E-19 117.0 8.8 75 34-109 1-76 (76)
24 4dwf_A HLA-B-associated transc 99.6 5.8E-15 2E-19 121.5 9.4 78 108-188 4-81 (90)
25 2kan_A Uncharacterized protein 99.6 7.8E-15 2.7E-19 122.6 10.1 81 27-109 9-91 (94)
26 2kk8_A Uncharacterized protein 99.6 5E-15 1.7E-19 121.3 8.3 74 108-183 9-83 (84)
27 3n3k_B Ubiquitin; hydrolase, p 99.6 4.7E-15 1.6E-19 120.2 8.0 77 32-109 2-79 (85)
28 1v2y_A 3300001G02RIK protein; 99.6 2.4E-15 8.3E-20 128.4 6.5 81 29-109 3-99 (105)
29 1wyw_B Ubiquitin-like protein 99.6 4E-15 1.4E-19 124.9 7.7 79 30-109 18-97 (97)
30 2hj8_A Interferon-induced 17 k 99.6 3.6E-15 1.2E-19 122.8 7.2 78 31-109 2-80 (88)
31 4eew_A Large proline-rich prot 99.6 8.6E-15 2.9E-19 120.0 9.4 73 31-105 15-88 (88)
32 3k9o_B Ubiquitin, UBB+1; E2-25 99.6 8.7E-15 3E-19 121.8 9.4 79 33-112 1-80 (96)
33 3mtn_B UBA80, ubcep1, ubiquiti 99.6 8.1E-15 2.8E-19 118.6 9.0 77 32-109 2-79 (85)
34 3a9j_A Ubiquitin; protein comp 99.6 1.1E-14 3.8E-19 115.0 9.4 75 34-109 1-76 (76)
35 4fbj_B NEDD8; effector-HOST ta 99.6 7.6E-15 2.6E-19 120.9 8.7 75 110-186 1-75 (88)
36 3l0w_B Monoubiquitinated proli 99.6 1E-14 3.6E-19 134.6 10.6 98 34-132 1-102 (169)
37 1uh6_A Ubiquitin-like 5; beta- 99.6 4.4E-15 1.5E-19 125.6 6.9 73 31-104 26-99 (100)
38 1sif_A Ubiquitin; hydrophobic 99.6 9.1E-15 3.1E-19 120.4 8.6 77 32-109 8-85 (88)
39 2wyq_A HHR23A, UV excision rep 99.5 1.6E-14 5.6E-19 117.2 9.9 77 107-185 3-82 (85)
40 2lxa_A Ubiquitin-like protein 99.5 5.9E-15 2E-19 121.9 6.9 74 110-185 2-79 (87)
41 2l7r_A Ubiquitin-like protein 99.5 9.1E-15 3.1E-19 121.8 8.0 78 30-109 16-93 (93)
42 4a20_A Ubiquitin-like protein 99.5 1.3E-14 4.4E-19 122.5 8.9 77 107-185 17-97 (98)
43 3v6c_B Ubiquitin; structural g 99.5 1.5E-14 5.1E-19 119.6 9.0 76 107-184 15-90 (91)
44 1uh6_A Ubiquitin-like 5; beta- 99.5 8.3E-15 2.8E-19 123.9 7.5 71 109-181 28-98 (100)
45 3m62_B UV excision repair prot 99.5 8.7E-15 3E-19 124.9 7.7 77 110-188 2-78 (106)
46 1uel_A HHR23B, UV excision rep 99.5 3.2E-14 1.1E-18 118.8 10.7 77 110-188 1-80 (95)
47 2uyz_B Small ubiquitin-related 99.5 1.4E-14 4.9E-19 116.2 8.0 74 109-184 3-76 (79)
48 3q3f_A Ribonuclease/ubiquitin 99.5 1E-14 3.5E-19 136.9 8.2 84 31-115 103-187 (189)
49 3vdz_A Ubiquitin-40S ribosomal 99.5 2.3E-14 7.7E-19 123.3 9.4 78 31-109 33-111 (111)
50 1wgh_A Ubiquitin-like 3, HCG-1 99.5 3.8E-14 1.3E-18 123.1 10.7 79 107-185 14-100 (116)
51 2lxa_A Ubiquitin-like protein 99.5 7.9E-15 2.7E-19 121.2 5.8 72 34-106 2-78 (87)
52 1ndd_A NEDD8, protein (ubiquit 99.5 3.3E-14 1.1E-18 112.3 9.2 73 110-184 1-73 (76)
53 2wyq_A HHR23A, UV excision rep 99.5 4.1E-14 1.4E-18 114.8 10.0 76 31-107 3-82 (85)
54 3dbh_I NEDD8; cell cycle, acti 99.5 1.9E-14 6.4E-19 117.5 7.9 75 108-184 11-85 (88)
55 1wyw_B Ubiquitin-like protein 99.5 2.5E-14 8.6E-19 120.0 8.5 76 107-184 19-94 (97)
56 4a20_A Ubiquitin-like protein 99.5 2.8E-14 9.7E-19 120.4 8.7 76 30-106 16-96 (98)
57 3k9o_B Ubiquitin, UBB+1; E2-25 99.5 4.3E-14 1.5E-18 117.5 9.6 76 109-186 1-76 (96)
58 3m63_B Ubiquitin domain-contai 99.5 8.1E-15 2.8E-19 124.2 5.1 94 86-184 7-100 (101)
59 2hj8_A Interferon-induced 17 k 99.5 2.2E-14 7.4E-19 118.1 7.5 77 108-186 3-79 (88)
60 2fnj_B Transcription elongatio 99.5 2.2E-14 7.5E-19 124.7 7.8 74 34-109 1-83 (118)
61 3n3k_B Ubiquitin; hydrolase, p 99.5 4.1E-14 1.4E-18 114.6 8.8 75 109-185 3-77 (85)
62 3rt3_B Ubiquitin-like protein 99.5 3.9E-14 1.3E-18 128.4 9.6 79 31-110 79-158 (159)
63 4ajy_B Transcription elongatio 99.5 4.5E-14 1.6E-18 122.4 9.2 74 34-108 1-83 (118)
64 1wgd_A Homocysteine-responsive 99.5 3E-14 1E-18 118.3 7.8 78 31-109 5-89 (93)
65 1sif_A Ubiquitin; hydrophobic 99.5 4.4E-14 1.5E-18 116.3 8.7 76 108-185 8-83 (88)
66 3a9j_A Ubiquitin; protein comp 99.5 6.7E-14 2.3E-18 110.5 9.4 73 110-184 1-73 (76)
67 1wh3_A 59 kDa 2'-5'-oligoadeny 99.5 5.9E-14 2E-18 114.5 9.3 75 108-184 6-80 (87)
68 2dzi_A Ubiquitin-like protein 99.5 5.1E-14 1.7E-18 113.0 8.7 75 108-184 6-80 (81)
69 1wgh_A Ubiquitin-like 3, HCG-1 99.5 8.2E-14 2.8E-18 121.0 10.6 78 29-107 12-100 (116)
70 4hcn_B Polyubiquitin, ubiquiti 99.5 3.9E-14 1.3E-18 118.9 8.3 76 107-184 20-95 (98)
71 1ttn_A DC-UBP, dendritic cell- 99.5 4.8E-14 1.6E-18 120.2 8.8 79 29-108 19-98 (106)
72 3b1l_X E3 ubiquitin-protein li 99.2 1.8E-15 6.3E-20 120.3 0.0 74 34-108 1-75 (76)
73 1wy8_A NP95-like ring finger p 99.5 9.6E-14 3.3E-18 113.8 10.3 77 108-186 6-84 (89)
74 3m62_B UV excision repair prot 99.5 2.8E-14 9.6E-19 121.8 6.7 73 34-107 2-75 (106)
75 2bwf_A Ubiquitin-like protein 99.5 1.2E-13 4.1E-18 109.7 10.0 72 110-184 5-76 (77)
76 3mtn_B UBA80, ubcep1, ubiquiti 99.5 7.2E-14 2.5E-18 113.0 8.8 75 109-185 3-77 (85)
77 2bwf_A Ubiquitin-like protein 99.5 1.4E-13 4.9E-18 109.2 10.2 71 34-105 5-75 (77)
78 2ojr_A Ubiquitin; lanthide-bin 99.5 1.4E-13 4.8E-18 118.2 10.8 78 31-109 33-111 (111)
79 1uel_A HHR23B, UV excision rep 99.5 1E-13 3.5E-18 115.7 9.5 73 34-107 1-77 (95)
80 1j8c_A Ubiquitin-like protein 99.5 2.4E-13 8.3E-18 119.5 12.3 77 31-109 30-107 (125)
81 1se9_A Ubiquitin family; ubiqu 99.5 8.3E-14 2.8E-18 122.4 9.2 78 31-109 14-106 (126)
82 1v5o_A 1700011N24RIK protein; 99.5 9.6E-14 3.3E-18 117.5 9.1 80 30-109 4-88 (102)
83 1ttn_A DC-UBP, dendritic cell- 99.5 1E-13 3.5E-18 118.1 9.0 77 108-186 22-98 (106)
84 1yqb_A Ubiquilin 3; structural 99.5 1.1E-13 3.7E-18 117.0 8.9 78 30-109 19-97 (100)
85 2kan_A Uncharacterized protein 99.5 1.3E-13 4.3E-18 115.3 9.1 76 107-185 13-89 (94)
86 1se9_A Ubiquitin family; ubiqu 99.5 8.4E-14 2.9E-18 122.3 8.4 84 102-185 9-104 (126)
87 1wx8_A Riken cDNA 4931431F19; 99.5 4.6E-14 1.6E-18 117.7 6.3 79 30-109 14-92 (96)
88 1we6_A Splicing factor, putati 99.5 7.5E-14 2.6E-18 119.9 7.8 78 31-109 25-107 (111)
89 2fnj_B Transcription elongatio 99.5 1E-13 3.4E-18 120.6 8.3 72 110-183 1-80 (118)
90 2l7r_A Ubiquitin-like protein 99.5 1.1E-13 3.9E-18 115.1 7.7 74 107-184 17-90 (93)
91 2klc_A Ubiquilin-1; ubiquitin- 99.5 3.1E-13 1E-17 114.3 10.4 77 31-108 23-99 (101)
92 4ajy_B Transcription elongatio 99.4 1.9E-13 6.4E-18 118.6 9.2 74 110-185 1-82 (118)
93 1v2y_A 3300001G02RIK protein; 99.4 4.9E-14 1.7E-18 120.4 5.3 79 109-189 7-101 (105)
94 1yqb_A Ubiquilin 3; structural 99.4 2.4E-13 8.4E-18 114.8 9.4 79 106-187 19-97 (100)
95 1yx5_B Ubiquitin; proteasome, 99.4 3E-13 1E-17 113.2 9.9 74 110-185 1-74 (98)
96 3vdz_A Ubiquitin-40S ribosomal 99.4 2.3E-13 7.9E-18 117.0 9.3 74 109-184 35-108 (111)
97 1wgd_A Homocysteine-responsive 99.4 1.8E-13 6.3E-18 113.5 8.1 75 108-184 6-86 (93)
98 2klc_A Ubiquilin-1; ubiquitin- 99.4 3.5E-13 1.2E-17 113.9 9.9 78 106-186 22-99 (101)
99 2gow_A HCG-1 protein, ubiquiti 99.4 1.4E-13 4.8E-18 121.0 7.4 79 107-185 15-101 (125)
100 1wju_A NEDD8 ultimate buster-1 99.4 8.1E-14 2.8E-18 117.9 5.6 74 33-108 17-93 (100)
101 2gow_A HCG-1 protein, ubiquiti 99.4 2.3E-13 7.8E-18 119.7 8.6 77 31-108 15-102 (125)
102 3b1l_X E3 ubiquitin-protein li 99.2 1.1E-14 3.6E-19 115.9 0.0 73 110-184 1-73 (76)
103 3u30_A Ubiquitin, linear DI-ub 99.4 2.3E-13 7.9E-18 125.2 8.9 78 31-109 94-172 (172)
104 2ojr_A Ubiquitin; lanthide-bin 99.4 4.8E-13 1.6E-17 114.9 10.3 75 108-184 34-108 (111)
105 3l0w_B Monoubiquitinated proli 99.4 3.5E-13 1.2E-17 124.3 9.8 74 110-185 1-74 (169)
106 4dbg_A Ranbp-type and C3HC4-ty 99.4 4.7E-13 1.6E-17 114.1 9.8 74 31-105 22-99 (105)
107 1wju_A NEDD8 ultimate buster-1 99.4 2.7E-13 9.4E-18 114.6 8.3 73 111-185 17-93 (100)
108 1wx7_A Ubiquilin 3; ubiquitin- 99.4 2.7E-13 9.3E-18 115.3 8.3 77 31-109 15-92 (106)
109 1v5t_A 8430435I17RIK protein; 99.4 2.8E-13 9.6E-18 112.1 8.0 77 30-107 4-84 (90)
110 1wgg_A Ubiquitin carboxyl-term 99.4 3.2E-13 1.1E-17 113.3 8.3 78 29-108 3-81 (96)
111 3u5e_m 60S ribosomal protein L 99.4 1.7E-14 5.7E-19 127.2 0.0 75 34-109 1-76 (128)
112 2kd0_A LRR repeats and ubiquit 99.4 8.8E-13 3E-17 108.0 10.2 75 30-105 9-83 (85)
113 1wx7_A Ubiquilin 3; ubiquitin- 99.4 6.9E-13 2.3E-17 112.9 9.7 78 107-187 15-92 (106)
114 1wx8_A Riken cDNA 4931431F19; 99.4 2.8E-13 9.6E-18 112.9 6.8 76 108-186 16-91 (96)
115 1wxv_A BAG-family molecular ch 99.4 8.8E-13 3E-17 109.1 9.6 78 30-107 4-86 (92)
116 1j8c_A Ubiquitin-like protein 99.4 8.3E-13 2.8E-17 116.1 9.3 76 108-186 31-106 (125)
117 1we6_A Splicing factor, putati 99.4 5.1E-13 1.7E-17 114.6 7.8 75 107-183 25-103 (111)
118 2kdb_A Homocysteine-responsive 99.4 3.3E-13 1.1E-17 114.1 6.4 73 108-181 22-99 (99)
119 1wia_A Hypothetical ubiquitin- 99.4 8.3E-13 2.8E-17 109.9 8.7 75 30-108 4-80 (95)
120 1wia_A Hypothetical ubiquitin- 99.4 6.5E-13 2.2E-17 110.5 8.1 76 108-188 6-82 (95)
121 3u5c_f 40S ribosomal protein S 99.4 3.2E-14 1.1E-18 129.2 0.0 75 34-109 1-76 (152)
122 2kdi_A Ubiquitin, vacuolar pro 99.4 1.1E-12 3.6E-17 113.5 9.6 78 107-186 7-84 (114)
123 1we7_A SF3A1 protein; structur 99.4 9.6E-13 3.3E-17 113.7 9.3 78 31-109 23-111 (115)
124 2kdb_A Homocysteine-responsive 99.4 3.5E-13 1.2E-17 113.9 6.2 73 30-103 20-99 (99)
125 3b08_A Polyubiquitin-C, ubiqui 99.4 1.5E-12 5.2E-17 116.1 10.3 78 31-109 74-152 (152)
126 1v5o_A 1700011N24RIK protein; 99.4 8.7E-13 3E-17 111.6 8.0 78 108-187 6-88 (102)
127 2dzm_A FAS-associated factor 1 99.4 9.2E-13 3.1E-17 111.5 7.5 74 31-106 6-82 (100)
128 4dbg_A Ranbp-type and C3HC4-ty 99.4 2.1E-12 7.1E-17 110.1 9.7 73 110-184 25-100 (105)
129 3q3f_A Ribonuclease/ubiquitin 99.4 8E-13 2.7E-17 124.0 7.7 75 109-185 105-179 (189)
130 3m63_B Ubiquitin domain-contai 99.3 4.2E-13 1.4E-17 113.6 4.5 73 32-105 27-99 (101)
131 2kd0_A LRR repeats and ubiquit 99.3 2.7E-12 9.3E-17 105.1 9.2 72 110-183 12-83 (85)
132 1x1m_A Ubiquitin-like protein 99.3 2E-12 6.7E-17 110.4 8.6 77 108-186 11-102 (107)
133 1v86_A DNA segment, CHR 7, way 99.3 1.6E-12 5.4E-17 108.7 7.6 75 30-106 14-88 (95)
134 2kjr_A CG11242; UBL, ubiquitin 99.3 5.3E-12 1.8E-16 105.8 10.4 75 29-103 11-93 (95)
135 1we7_A SF3A1 protein; structur 99.3 3.9E-12 1.3E-16 109.9 9.8 66 117-184 43-108 (115)
136 3u5e_m 60S ribosomal protein L 99.3 1.1E-13 3.9E-18 121.8 0.0 74 110-185 1-74 (128)
137 1wgg_A Ubiquitin carboxyl-term 99.3 3.5E-12 1.2E-16 106.9 8.3 74 108-185 6-80 (96)
138 1v5t_A 8430435I17RIK protein; 99.3 4.6E-12 1.6E-16 104.7 8.2 75 108-185 6-84 (90)
139 2kj6_A Tubulin folding cofacto 99.3 6.7E-12 2.3E-16 105.6 8.8 75 29-103 10-93 (97)
140 3u5c_f 40S ribosomal protein S 99.3 2.5E-13 8.6E-18 123.3 0.0 72 110-183 1-72 (152)
141 1x1m_A Ubiquitin-like protein 99.3 4E-12 1.4E-16 108.5 7.2 76 31-107 10-101 (107)
142 2xzm_9 RPS31E; ribosome, trans 99.3 3.2E-13 1.1E-17 126.4 0.0 71 34-110 1-72 (189)
143 4b6w_A Tubulin-specific chaper 99.3 5.3E-12 1.8E-16 103.9 7.2 71 34-105 3-83 (86)
144 1wxv_A BAG-family molecular ch 99.3 9.3E-12 3.2E-16 102.9 8.4 76 108-186 6-87 (92)
145 2dzj_A Synaptic glycoprotein S 99.3 6.9E-12 2.4E-16 103.6 7.1 71 31-102 8-85 (88)
146 2daf_A FLJ35834 protein; hypot 99.3 1.4E-11 4.7E-16 106.5 8.9 86 30-116 12-99 (118)
147 3ai5_A Yeast enhanced green fl 99.2 1.1E-11 3.8E-16 124.2 9.0 76 31-107 231-307 (307)
148 2dzm_A FAS-associated factor 1 99.2 1.1E-11 3.7E-16 104.9 6.8 75 109-186 8-84 (100)
149 4b6w_A Tubulin-specific chaper 99.2 1.1E-11 3.9E-16 101.9 6.8 67 117-185 12-85 (86)
150 2kjr_A CG11242; UBL, ubiquitin 99.2 3.3E-11 1.1E-15 101.0 8.7 73 107-181 13-93 (95)
151 2daf_A FLJ35834 protein; hypot 99.2 3.2E-11 1.1E-15 104.2 8.7 73 110-184 16-89 (118)
152 2dzj_A Synaptic glycoprotein S 99.2 1.1E-11 3.7E-16 102.5 5.4 70 109-180 10-85 (88)
153 3ai5_A Yeast enhanced green fl 99.2 4.4E-11 1.5E-15 119.9 9.8 76 106-183 230-305 (307)
154 1wf9_A NPL4 family protein; be 99.2 2.1E-11 7.1E-16 104.1 6.3 75 30-105 4-94 (107)
155 1v6e_A Cytoskeleton-associated 99.2 5.3E-11 1.8E-15 99.3 8.6 72 33-104 7-86 (95)
156 1oqy_A HHR23A, UV excision rep 99.2 2.2E-11 7.5E-16 125.1 7.5 79 29-108 3-86 (368)
157 1v86_A DNA segment, CHR 7, way 99.2 1.4E-11 4.9E-16 102.9 4.7 72 109-184 17-88 (95)
158 2xzm_9 RPS31E; ribosome, trans 99.2 2.6E-12 8.7E-17 120.3 0.0 67 110-183 1-67 (189)
159 1oqy_A HHR23A, UV excision rep 99.1 5.2E-11 1.8E-15 122.3 8.2 74 108-183 6-83 (368)
160 2io1_B Small ubiquitin-related 99.1 9.1E-11 3.1E-15 98.1 8.1 79 30-109 4-83 (94)
161 2kj6_A Tubulin folding cofacto 99.1 9.5E-11 3.2E-15 98.6 7.2 72 110-183 15-95 (97)
162 1t0y_A Tubulin folding cofacto 99.1 1.9E-10 6.6E-15 100.4 9.1 75 31-105 4-86 (122)
163 1wf9_A NPL4 family protein; be 99.1 7.4E-11 2.5E-15 100.7 5.3 74 110-186 8-97 (107)
164 2io1_B Small ubiquitin-related 99.1 4.1E-10 1.4E-14 94.1 9.1 77 108-186 6-82 (94)
165 1v6e_A Cytoskeleton-associated 99.0 3.5E-10 1.2E-14 94.3 7.2 74 110-185 8-89 (95)
166 3shq_A UBLCP1; phosphatase, hy 99.0 5.5E-10 1.9E-14 112.8 7.6 77 31-108 3-82 (320)
167 2io0_B Small ubiquitin-related 99.0 1.4E-09 4.8E-14 90.3 8.3 78 31-109 3-81 (91)
168 1t0y_A Tubulin folding cofacto 99.0 1.6E-09 5.6E-14 94.5 8.5 76 108-185 5-88 (122)
169 2io0_B Small ubiquitin-related 98.9 3.5E-09 1.2E-13 87.9 9.4 77 108-186 4-80 (91)
170 2d07_B Ubiquitin-like protein 98.9 2.7E-09 9.4E-14 88.8 8.7 79 30-109 14-93 (93)
171 1wm3_A Ubiquitin-like protein 98.9 2.9E-09 9.9E-14 84.4 8.3 70 110-181 2-71 (72)
172 2kzr_A Ubiquitin thioesterase 98.9 1E-09 3.6E-14 89.7 5.4 71 34-105 1-77 (86)
173 2eke_C Ubiquitin-like protein 98.9 7.5E-09 2.6E-13 88.3 10.3 79 29-109 27-106 (106)
174 2kzr_A Ubiquitin thioesterase 98.9 1.4E-09 4.7E-14 88.9 5.6 71 110-183 1-77 (86)
175 1wm3_A Ubiquitin-like protein 98.9 4.1E-09 1.4E-13 83.4 8.0 70 33-103 1-71 (72)
176 3a4r_A Nfatc2-interacting prot 98.9 5.4E-09 1.8E-13 84.4 8.7 74 29-103 3-78 (79)
177 1wz0_A Ubiquitin-like protein 98.9 4E-09 1.4E-13 89.8 7.8 79 30-109 21-100 (104)
178 3a4r_A Nfatc2-interacting prot 98.9 8E-09 2.8E-13 83.4 8.6 73 107-181 5-78 (79)
179 2d07_B Ubiquitin-like protein 98.8 9.1E-09 3.1E-13 85.7 8.9 76 107-184 15-90 (93)
180 2k8h_A Small ubiquitin protein 98.8 4.2E-09 1.4E-13 90.5 6.9 80 30-110 23-103 (110)
181 1wjn_A Tubulin-folding protein 98.8 9.7E-09 3.3E-13 85.7 7.7 75 31-105 7-92 (97)
182 3shq_A UBLCP1; phosphatase, hy 98.8 4.5E-09 1.6E-13 106.1 6.8 76 109-187 5-83 (320)
183 2eke_C Ubiquitin-like protein 98.8 2E-08 6.7E-13 85.7 8.8 75 107-184 29-103 (106)
184 1wz0_A Ubiquitin-like protein 98.7 1.3E-08 4.3E-13 86.6 6.5 77 107-185 22-98 (104)
185 2k8h_A Small ubiquitin protein 98.7 1.4E-08 4.9E-13 87.2 5.5 78 107-186 24-101 (110)
186 1wjn_A Tubulin-folding protein 98.6 9.8E-08 3.3E-12 79.6 8.3 74 109-184 9-93 (97)
187 3kyd_D Small ubiquitin-related 98.3 2E-06 7E-11 74.2 9.5 75 108-184 39-113 (115)
188 3pge_A SUMO-modified prolifera 98.3 4.5E-06 1.5E-10 78.7 12.1 79 30-109 26-104 (200)
189 3kyd_D Small ubiquitin-related 98.2 3.2E-06 1.1E-10 73.0 8.1 74 31-105 38-112 (115)
190 3tix_A Ubiquitin-like protein 98.1 3.9E-06 1.3E-10 78.2 7.7 79 31-110 55-133 (207)
191 3pge_A SUMO-modified prolifera 98.0 1.5E-05 5.2E-10 75.1 8.7 77 107-186 27-103 (200)
192 3tix_A Ubiquitin-like protein 97.9 2E-05 6.7E-10 73.5 7.0 79 107-188 55-133 (207)
193 4efo_A Serine/threonine-protei 97.9 2.2E-05 7.6E-10 65.3 6.5 60 34-93 13-75 (94)
194 3v7o_A Minor nucleoprotein VP3 97.8 2.3E-06 7.9E-11 80.7 -0.1 81 29-110 17-97 (227)
195 1cja_A Protein (actin-fragmin 97.8 5.9E-06 2E-10 83.5 1.7 138 274-459 76-239 (342)
196 2pjh_A Protein NPL4, nuclear p 97.7 2.9E-05 9.8E-10 62.6 4.1 71 32-103 3-78 (80)
197 3goe_A DNA repair protein RAD6 97.7 0.00028 9.6E-09 56.4 9.4 71 110-182 10-81 (82)
198 2pjh_A Protein NPL4, nuclear p 97.6 3.2E-05 1.1E-09 62.4 3.5 71 108-181 3-78 (80)
199 4efo_A Serine/threonine-protei 97.5 0.00029 1E-08 58.5 8.3 64 117-182 21-87 (94)
200 3v7o_A Minor nucleoprotein VP3 97.5 1.5E-05 5.1E-10 75.3 0.0 81 104-187 16-96 (227)
201 3ivf_A Talin-1; FERM domain, c 97.4 0.0059 2E-07 62.0 18.5 120 33-157 3-132 (371)
202 3uf8_A Ubiquitin-like protein 97.4 0.00061 2.1E-08 64.4 10.0 94 28-123 16-109 (209)
203 3uf8_A Ubiquitin-like protein 97.3 0.00086 3E-08 63.4 10.2 82 103-187 15-96 (209)
204 2jxx_A Nfatc2-interacting prot 97.3 0.00089 3.1E-08 55.9 8.5 73 107-181 23-96 (97)
205 3goe_A DNA repair protein RAD6 97.3 0.0012 4.2E-08 52.7 8.6 64 40-104 17-81 (82)
206 2jxx_A Nfatc2-interacting prot 97.1 0.0021 7.3E-08 53.6 8.5 73 30-103 22-96 (97)
207 3ix6_A TS, tsase, thymidylate 97.1 7.2E-05 2.4E-09 76.2 -0.7 84 30-114 18-101 (360)
208 2l76_A Nfatc2-interacting prot 96.9 0.0036 1.2E-07 51.9 8.6 73 110-185 22-94 (95)
209 2l76_A Nfatc2-interacting prot 96.7 0.0095 3.3E-07 49.4 9.7 75 30-105 18-92 (95)
210 3ix6_A TS, tsase, thymidylate 96.7 0.00028 9.4E-09 71.9 0.0 81 104-187 16-96 (360)
211 2al3_A TUG long isoform; TUG U 96.6 0.0063 2.1E-07 50.0 7.4 75 107-183 7-81 (90)
212 2al3_A TUG long isoform; TUG U 96.5 0.0042 1.4E-07 51.0 6.1 75 31-106 7-82 (90)
213 4da1_A Protein phosphatase 1K, 96.5 0.00042 1.4E-08 71.2 0.0 84 31-115 28-111 (389)
214 2bps_A YUKD protein; ubiquitin 96.3 0.0093 3.2E-07 48.1 6.6 70 32-102 3-80 (81)
215 2kc2_A Talin-1, F1; FERM, adhe 96.2 0.0054 1.8E-07 53.7 5.4 69 111-180 13-119 (128)
216 4da1_A Protein phosphatase 1K, 95.9 0.0012 4.2E-08 67.7 0.0 76 107-185 28-103 (389)
217 3akj_A CTKA; protein kinase, t 95.9 0.001 3.5E-08 67.0 -0.7 46 413-458 139-186 (325)
218 2bps_A YUKD protein; ubiquitin 95.5 0.034 1.2E-06 44.8 6.7 64 117-180 14-80 (81)
219 2kc2_A Talin-1, F1; FERM, adhe 95.3 0.012 4.2E-07 51.4 4.0 70 35-105 13-122 (128)
220 2r2o_A Plexin-B1; effector dom 95.3 0.046 1.6E-06 48.2 7.5 79 30-108 21-131 (138)
221 4e71_A Plexin-B2, MM1; transme 94.8 0.06 2E-06 45.9 6.7 75 31-105 9-110 (111)
222 2dzk_A UBX domain-containing p 94.2 0.25 8.4E-06 41.7 9.3 78 27-104 7-89 (109)
223 3qx1_A FAS-associated factor 1 93.8 0.24 8.4E-06 39.5 8.0 73 31-104 5-82 (84)
224 3qx1_A FAS-associated factor 1 93.7 0.17 5.8E-06 40.4 6.9 69 110-181 8-81 (84)
225 4e74_A Plexin-A4; RBD, structu 91.9 0.45 1.5E-05 40.8 7.3 76 31-106 11-115 (117)
226 3h6n_A Plexin-D1; structural g 91.1 0.64 2.2E-05 40.3 7.6 66 42-107 16-106 (127)
227 3jyu_A Ubiquitin carboxyl-term 91.0 0.68 2.3E-05 44.0 8.6 66 44-109 153-224 (231)
228 1wj4_A KIAA0794 protein; UBX d 91.0 0.83 2.9E-05 39.4 8.3 72 31-103 41-117 (124)
229 4a3p_A Ubiquitin carboxyl-term 90.8 1 3.4E-05 42.4 9.4 66 44-109 141-212 (217)
230 2dzk_A UBX domain-containing p 90.8 0.61 2.1E-05 39.2 7.1 72 109-182 13-89 (109)
231 1wj4_A KIAA0794 protein; UBX d 90.4 0.69 2.4E-05 39.9 7.2 71 108-181 42-117 (124)
232 4e71_A Plexin-B2, MM1; transme 90.0 1.2 4E-05 37.9 8.1 65 119-183 23-110 (111)
233 2ylm_A Ubiquitin carboxyl-term 88.8 1.9 6.4E-05 46.0 10.7 135 45-181 38-215 (530)
234 2cr5_A Reproduction 8; UBX dom 88.8 1.3 4.5E-05 37.0 7.6 73 31-104 21-97 (109)
235 2juo_A GA-binding protein alph 88.2 2.2 7.4E-05 34.4 7.9 60 122-183 5-64 (89)
236 2ylm_A Ubiquitin carboxyl-term 88.0 2.9 9.8E-05 44.6 11.4 115 31-146 337-477 (530)
237 3h6n_A Plexin-D1; structural g 87.6 2.4 8.2E-05 36.7 8.5 67 118-184 15-105 (127)
238 3ls8_A Phosphatidylinositol 3- 86.8 0.3 1E-05 53.1 2.9 41 414-458 463-503 (614)
239 4e74_A Plexin-A4; RBD, structu 86.4 2 6.8E-05 36.8 7.2 67 119-185 26-116 (117)
240 3ivf_A Talin-1; FERM domain, c 86.3 2 6.8E-05 43.2 8.6 63 119-181 12-82 (371)
241 2r2o_A Plexin-B1; effector dom 86.1 2.6 8.7E-05 37.1 8.0 67 120-186 41-131 (138)
242 2cr5_A Reproduction 8; UBX dom 85.4 1.9 6.5E-05 36.1 6.7 70 109-181 23-96 (109)
243 1ryj_A Unknown; beta/alpha pro 85.2 7.2 0.00025 29.7 9.4 65 33-107 4-68 (70)
244 1s3s_G P47 protein; AAA ATPase 85.0 1.7 5.8E-05 37.5 6.3 69 109-179 52-124 (127)
245 1oey_A P67-PHOX, neutrophil cy 84.7 2.3 7.8E-05 34.2 6.5 48 31-79 3-50 (83)
246 1s3s_G P47 protein; AAA ATPase 84.5 1.6 5.6E-05 37.6 6.0 70 31-100 50-123 (127)
247 3jyu_A Ubiquitin carboxyl-term 84.1 3.8 0.00013 38.8 8.9 62 121-184 153-221 (231)
248 3hm6_X Plexin-B1; structural g 83.6 3.5 0.00012 44.5 9.2 80 30-109 254-365 (644)
249 3ig3_A Plxna3 protein; plexin 83.5 4 0.00014 44.0 9.6 80 30-109 230-338 (627)
250 2x6h_A GH13170P, VPS34, phosph 83.3 0.54 1.9E-05 51.8 3.0 41 414-458 537-577 (696)
251 2juo_A GA-binding protein alph 83.2 3.4 0.00012 33.3 6.8 61 44-105 4-64 (89)
252 4a3p_A Ubiquitin carboxyl-term 80.9 4.3 0.00015 38.0 7.9 62 121-184 141-209 (217)
253 3hhm_A Phosphatidylinositol-4, 80.4 0.8 2.8E-05 52.8 3.1 40 415-458 924-963 (1091)
254 2l32_A Small archaeal modifier 79.8 4.3 0.00015 31.6 6.3 65 34-109 1-66 (74)
255 3kuz_A Plexin-C1; structural g 79.0 3.9 0.00013 35.4 6.2 74 30-103 16-124 (126)
256 2wxf_A Phosphatidylinositol-4, 78.9 0.8 2.7E-05 52.2 2.5 40 415-458 775-814 (940)
257 2daj_A KIAA0977 protein, COBL- 78.7 5.8 0.0002 32.1 6.7 67 29-96 6-76 (91)
258 2daj_A KIAA0977 protein, COBL- 78.3 7.9 0.00027 31.3 7.3 63 110-174 11-76 (91)
259 1e7u_A Phosphatidylinositol 3- 77.9 0.89 3E-05 51.9 2.4 39 415-457 791-829 (961)
260 2y3a_A Phosphatidylinositol-4, 77.8 1 3.5E-05 52.0 2.9 38 416-457 928-965 (1092)
261 3kuz_A Plexin-C1; structural g 73.2 11 0.00037 32.6 7.4 62 120-181 39-124 (126)
262 1tyg_B YJBS; alpha beta barrel 71.2 9.9 0.00034 30.6 6.4 67 31-107 18-85 (87)
263 2kvr_A Ubiquitin carboxyl-term 69.7 4.2 0.00014 35.2 4.2 33 45-77 58-90 (130)
264 1vjk_A Molybdopterin convertin 68.7 23 0.00077 28.5 8.3 72 31-108 7-97 (98)
265 1oey_A P67-PHOX, neutrophil cy 68.5 8 0.00028 31.0 5.2 46 112-159 6-51 (83)
266 1h4r_A Merlin; FERM, neurofibr 66.8 23 0.00079 34.3 9.4 74 108-183 21-98 (314)
267 1vd2_A Protein kinase C, IOTA 65.1 25 0.00084 28.5 7.6 50 31-80 4-54 (89)
268 1ef1_A Moesin; membrane, FERM 65.1 21 0.0007 34.2 8.6 72 110-183 2-78 (294)
269 2cu3_A Unknown function protei 60.2 27 0.00092 25.8 6.6 62 38-108 2-63 (64)
270 4eut_A Serine/threonine-protei 59.7 15 0.00052 36.4 6.7 52 41-92 320-372 (396)
271 1vjk_A Molybdopterin convertin 57.2 49 0.0017 26.5 8.3 69 108-181 8-92 (98)
272 3rpf_C Molybdopterin convertin 56.8 22 0.00075 27.0 5.8 57 46-108 15-73 (74)
273 1ryj_A Unknown; beta/alpha pro 56.4 61 0.0021 24.3 8.9 61 109-181 4-64 (70)
274 1ip9_A BEM1 protein; ubiquitin 54.5 30 0.001 27.8 6.2 43 32-76 11-53 (85)
275 3tpd_A Serine/threonine-protei 50.2 2 6.9E-05 44.4 -1.7 37 414-450 294-330 (440)
276 2kmc_A Fermitin family homolog 48.6 93 0.0032 25.7 8.4 73 110-182 20-98 (102)
277 3hm6_X Plexin-B1; structural g 47.7 56 0.0019 35.4 8.8 66 120-185 274-363 (644)
278 2l32_A Small archaeal modifier 47.3 31 0.001 26.6 5.2 60 110-181 1-60 (74)
279 3ig3_A Plxna3 protein; plexin 47.2 52 0.0018 35.5 8.5 68 119-186 246-337 (627)
280 2kmm_A Guanosine-3',5'-BIS(dip 46.6 33 0.0011 25.5 5.2 65 110-185 1-65 (73)
281 1vd2_A Protein kinase C, IOTA 45.9 48 0.0016 26.7 6.3 48 112-160 7-55 (89)
282 1q1o_A Cell division control p 45.7 32 0.0011 28.3 5.3 38 32-69 4-49 (98)
283 2i1j_A Moesin; FERM, coiled-co 45.6 56 0.0019 34.9 8.6 72 110-183 5-81 (575)
284 2kvr_A Ubiquitin carboxyl-term 44.5 16 0.00054 31.5 3.4 33 122-156 58-90 (130)
285 2kl0_A Putative thiamin biosyn 43.6 31 0.001 26.5 4.6 62 38-108 3-64 (73)
286 2k5p_A THis protein, thiamine- 43.2 37 0.0013 26.4 5.1 63 38-108 3-68 (78)
287 1wgr_A Growth factor receptor- 41.9 51 0.0017 27.2 5.9 44 30-73 6-50 (100)
288 2kmc_A Fermitin family homolog 41.8 90 0.0031 25.8 7.3 72 33-104 19-98 (102)
289 3po0_A Small archaeal modifier 40.3 79 0.0027 24.5 6.8 60 43-108 18-88 (89)
290 3qa8_A MGC80376 protein; kinas 40.3 21 0.00072 39.0 4.4 51 41-92 320-371 (676)
291 1ef1_A Moesin; membrane, FERM 40.2 1.9E+02 0.0064 27.3 10.8 68 33-102 1-75 (294)
292 3qij_A Protein 4.1; cytoskelet 40.1 55 0.0019 31.6 7.0 63 108-171 16-83 (296)
293 1wgk_A Riken cDNA 2900073H19 p 39.5 1E+02 0.0034 25.7 7.6 75 31-109 9-108 (114)
294 3dwg_C 9.5 kDa culture filtrat 39.2 79 0.0027 24.7 6.7 61 46-109 20-93 (93)
295 1h4r_A Merlin; FERM, neurofibr 39.0 1.2E+02 0.0042 29.0 9.4 71 31-103 20-96 (314)
296 1f0z_A THis protein; ubiquitin 38.6 52 0.0018 24.3 5.2 63 38-108 3-65 (66)
297 3rpf_C Molybdopterin convertin 36.0 1E+02 0.0035 23.1 6.6 53 124-181 16-68 (74)
298 4eut_A Serine/threonine-protei 34.6 80 0.0027 31.0 7.3 39 119-159 321-359 (396)
299 2qjl_A URM1, ubiquitin-related 33.9 1.8E+02 0.006 23.1 9.0 62 43-108 20-98 (99)
300 3po0_A Small archaeal modifier 31.8 1.6E+02 0.0054 22.7 7.3 57 120-181 18-83 (89)
301 1t3q_A Quinoline 2-oxidoreduct 27.7 72 0.0024 28.3 5.0 31 31-61 7-37 (168)
302 2q5w_D Molybdopterin convertin 23.6 86 0.0029 23.4 4.2 59 43-108 16-76 (77)
303 2i1j_A Moesin; FERM, coiled-co 23.5 2.5E+02 0.0086 29.8 9.2 70 31-102 2-78 (575)
304 3dwg_C 9.5 kDa culture filtrat 22.9 2.7E+02 0.0091 21.5 7.8 57 123-181 20-87 (93)
305 1fm0_D Molybdopterin convertin 22.8 1.1E+02 0.0038 23.0 4.7 59 43-108 17-80 (81)
306 2g1e_A Hypothetical protein TA 22.6 2.3E+02 0.008 21.5 6.7 60 47-108 19-89 (90)
307 1tyg_B YJBS; alpha beta barrel 22.4 1.9E+02 0.0063 22.9 6.0 61 109-181 20-81 (87)
308 1wgr_A Growth factor receptor- 21.9 1E+02 0.0036 25.3 4.5 60 110-170 10-75 (100)
309 3hvz_A Uncharacterized protein 21.5 1.9E+02 0.0064 22.4 5.8 62 111-183 7-68 (78)
310 1rws_A Hypothetical protein PF 20.7 48 0.0016 25.4 2.1 53 46-108 24-76 (77)
311 3onh_A Ubiquitin-activating en 20.0 1.7E+02 0.0057 25.2 5.5 52 52-103 19-77 (127)
No 1
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.98 E-value=7.5e-32 Score=249.23 Aligned_cols=155 Identities=33% Similarity=0.503 Sum_probs=145.3
Q ss_pred CCCCCCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeee
Q 012177 27 EKLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (469)
Q Consensus 27 ~~~~~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (469)
++.+...|+|+| +++|++++++|.+++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|++|+|+++++|+|+++
T Consensus 14 ~~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~-d~~tL~~~~i~~~~~l~l~~~ 92 (172)
T 3u30_A 14 LVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLR 92 (172)
T ss_dssp -----CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTGGGTCCTTCEEEEEEC
T ss_pred CCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCcccc-ccCCHhHcCCcccceeeeeec
Confidence 334588899999 789999999999999999999999999999999999999999998 899999999999999999999
Q ss_pred ccccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 106 LSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 106 Lsd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
+.++|+|+|++.+|+++.++|++++||.+||++|+.++|+| +++|+|+|+|++|+|+++|.+|+|+++++|||++|.
T Consensus 93 ~~gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip--~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rl 169 (172)
T 3u30_A 93 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 169 (172)
T ss_dssp CCCCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC--
T ss_pred ccccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCC--ceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEec
Confidence 99999999999999999999999999999999999999988 999999999999999999999999999999998773
No 2
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.97 E-value=2.4e-31 Score=242.28 Aligned_cols=150 Identities=20% Similarity=0.227 Sum_probs=144.2
Q ss_pred CEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEE-E-cCeecccCCccccccCccCccceeeeee-ccc
Q 012177 33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV-F-EGRELARSNSRVRDYGLADGNVLHLVLR-LSD 108 (469)
Q Consensus 33 ~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv-f-~Gk~L~~D~~tL~dygI~~gstl~Lvlr-Lsd 108 (469)
.|+|+| +++|++++++|.+++||.+||++|++++|+|+++|+|+ | +|++|. |+.+|++|+|+++++++|+++ +++
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~-d~~tL~~y~i~~~~~l~l~~~~~~~ 80 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQ-DRVPLASQGLGPGSTVLLVVDKSDE 80 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCC-TTSCGGGGTCCTTCEEEEEECCCCC
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCC-CCCCHHHcCCCCCCEEEEEccCCCC
Confidence 489999 78999999999999999999999999999999999999 9 799997 999999999999999999999 699
Q ss_pred cceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012177 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (469)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks 185 (469)
.|+|+|++.+|+++.++|++++||.+||++|++++|+| +++|+|+|+|+.|+|+++|++|+|+++++|||++|..
T Consensus 81 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~ 155 (159)
T 3rt3_B 81 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 155 (159)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCC--HHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecC
Confidence 99999999999999999999999999999999999988 9999999999999999999999999999999998743
No 3
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.96 E-value=3.2e-29 Score=225.04 Aligned_cols=149 Identities=34% Similarity=0.537 Sum_probs=144.3
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccccee
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAI 112 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~m~I 112 (469)
|+|+| +.+|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|. |+.+|++|+|.++++++|+.+..++|+|
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~-d~~tL~~~~i~~~~~l~l~~~~~~~~~i 79 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGMQI 79 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECCTTCEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECc-CcccHHHhccCCCCeeEEEeecccccce
Confidence 89999 778999999999999999999999999999999999999999997 8999999999999999999999999999
Q ss_pred eeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012177 113 TVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (469)
Q Consensus 113 ~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks 185 (469)
+|++.+|+++.+++++++||.+||++|+++.|+| +++|+|+|+|+.|+|+++|++|+|+++++|+|++|..
T Consensus 80 ~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~--~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~ 150 (152)
T 3b08_A 80 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 150 (152)
T ss_dssp EEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCC
T ss_pred eeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcC--hhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 9999999999999999999999999999999988 9999999999999999999999999999999998753
No 4
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=5.2e-18 Score=146.94 Aligned_cols=103 Identities=30% Similarity=0.488 Sum_probs=98.1
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
....+|+| +++|++++++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|.++++|+|++++.++
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~ygI~~gstI~l~~~~~GG 85 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLE-DGRTLSDYNIQRESTLHLVLRLRGG 85 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 45689999 899999999999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred ceeeee---eecceeEEEEeecCchHHH
Q 012177 110 QAITVT---TVCGKVFEFHVERGRNVGY 134 (469)
Q Consensus 110 m~I~Vk---t~~Gk~~~l~V~~~~TV~~ 134 (469)
+.++++ +.+|++++++|++++||+.
T Consensus 86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 86 SMGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp CCCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred ceeeccccccccCceEEEEeccccccCC
Confidence 999999 7789999999999999874
No 5
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=130.28 Aligned_cols=88 Identities=25% Similarity=0.282 Sum_probs=71.8
Q ss_pred CccCccceeeeeeccccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCC
Q 012177 93 GLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICK 172 (469)
Q Consensus 93 gI~~gstl~LvlrLsd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I 172 (469)
|...++++++.++.+..|+|+||+.+|+++.++|++++||.+||++|+++.++| +++|+|+|+|+.|+|+.+|++|+|
T Consensus 1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i 78 (88)
T 4eew_A 1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP--SEKQRLIYQGRVLQDDKKLQEYNV 78 (88)
T ss_dssp --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTC
T ss_pred CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCC--HHHEEEEECCEECCCCCcHHHcCC
Confidence 345678899999999999999999999999999999999999999999999988 999999999999999999999999
Q ss_pred CCCCEEEEEEe
Q 012177 173 RNEAVIHLLVR 183 (469)
Q Consensus 173 ~~~svI~Lv~r 183 (469)
++++|||++|
T Consensus 79 -~g~~i~lv~R 88 (88)
T 4eew_A 79 -GGKVIHLVER 88 (88)
T ss_dssp -TTEEEEEEEC
T ss_pred -CCcEEEEEEC
Confidence 8999999876
No 6
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=126.63 Aligned_cols=77 Identities=22% Similarity=0.366 Sum_probs=72.6
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeeccc
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (469)
+..|+|+| +++|++++++|.+++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++++.+
T Consensus 2 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~-d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 2 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE-DQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp -CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEecCC
Confidence 35799999 779999999999999999999999999999999999999999998 899999999999999999998864
No 7
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.64 E-value=4.8e-16 Score=130.37 Aligned_cols=91 Identities=31% Similarity=0.509 Sum_probs=72.8
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccccee
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAI 112 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~m~I 112 (469)
|+|+| +.+|+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|.++++|+|++++.++.++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~~~~gG~~i 79 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGRDP 79 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECCCCC---
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEeCCCCCcC
Confidence 89999 778999999999999999999999999999999999999999998 8999999999999999999999999999
Q ss_pred eeeeecceeEEEE
Q 012177 113 TVTTVCGKVFEFH 125 (469)
Q Consensus 113 ~Vkt~~Gk~~~l~ 125 (469)
+.+|.+|+.-.++
T Consensus 80 ~~~~v~~~~~~~~ 92 (98)
T 1yx5_B 80 NSSSVDKLAAALE 92 (98)
T ss_dssp -------------
T ss_pred ccccCCCchhhhh
Confidence 9999998876554
No 8
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.64 E-value=5.8e-16 Score=126.52 Aligned_cols=82 Identities=29% Similarity=0.526 Sum_probs=76.6
Q ss_pred CCCCCCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeee
Q 012177 27 EKLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (469)
Q Consensus 27 ~~~~~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (469)
++.+..+|+|+| +++|++++++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|.+|+|+++++|+|+++
T Consensus 6 ~~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~-d~~tL~~~~i~~~~~i~l~~r 84 (88)
T 3dbh_I 6 SVGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DEKTAADYKILGGSVLHLVLR 84 (88)
T ss_dssp CSSCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECC-TTSBGGGGTCCTTCEEEECCC
T ss_pred CCCCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECC-CCCcHHHcCCCCCCEEEEEEe
Confidence 444578899999 679999999999999999999999999999999999999999998 899999999999999999999
Q ss_pred cccc
Q 012177 106 LSDL 109 (469)
Q Consensus 106 Lsd~ 109 (469)
+.++
T Consensus 85 l~GG 88 (88)
T 3dbh_I 85 LRGG 88 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 9
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.63 E-value=6.4e-16 Score=128.73 Aligned_cols=78 Identities=21% Similarity=0.181 Sum_probs=70.3
Q ss_pred eeeeccccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012177 102 LVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 102 LvlrLsd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv 181 (469)
|+...+..|+|+||+.+|+++.+++++++||.+||++|++++|+| +++|+|+|+|+.|+|..+|.||+|+++++|+|.
T Consensus 14 ~~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip--~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 14 LVPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQ--PNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp ------CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred ccCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCC--HHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 555667789999999999999999999999999999999999998 999999999999999999999999999999985
No 10
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.62 E-value=9.6e-16 Score=126.33 Aligned_cols=76 Identities=28% Similarity=0.544 Sum_probs=71.2
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeeccccc
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ 110 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~m 110 (469)
|+|+| +++|++++++|.+++||.+||++|++++|+|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++++.++.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECC-CCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 89999 789999999999999999999999999999999999999999998 89999999999999999999998875
No 11
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.62 E-value=9.5e-16 Score=127.68 Aligned_cols=74 Identities=20% Similarity=0.235 Sum_probs=69.3
Q ss_pred CCCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeee
Q 012177 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (469)
Q Consensus 30 ~~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (469)
.+.-|+|+| ++.|++++++|+++|||.+||++|++++|+|+++|+|+|+|++|. |+.+|++|+|++|++|+|..
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~Lk-D~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLK-DHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEE
T ss_pred CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEcc-CcCCHHHcCCCCCCEEEEEe
Confidence 367799999 789999999999999999999999999999999999999999998 89999999999999999863
No 12
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.62 E-value=1.4e-15 Score=125.75 Aligned_cols=78 Identities=36% Similarity=0.637 Sum_probs=73.7
Q ss_pred CCCCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecc
Q 012177 29 LSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (469)
Q Consensus 29 ~~~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (469)
-+...|+|+| +++|+++.++|.+++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|.+|||++|++|+|++|++
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 13 VPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp CCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTCBTGGGTCCTTCEEEEECCCC
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECC-CcCcHHHCCCCCCCEEEEEEecC
Confidence 3478899999 789999999999999999999999999999999999999999998 89999999999999999999864
No 13
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=121.91 Aligned_cols=75 Identities=20% Similarity=0.171 Sum_probs=72.0
Q ss_pred ccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
..|+|+||+.+|+++.++|++++||.+||++|+++.|+| +++|+|+|+|+.|+|+++|++|+|+++++|||++|.
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl 77 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL 77 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCC--HHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 569999999999999999999999999999999999988 999999999999999999999999999999999873
No 14
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.8e-15 Score=127.10 Aligned_cols=81 Identities=33% Similarity=0.579 Sum_probs=73.1
Q ss_pred CCCCCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeec
Q 012177 28 KLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (469)
Q Consensus 28 ~~~~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (469)
+..++.|+|+| +.+|+++.++|.+++||.+||++|+++.|+|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++++
T Consensus 17 ~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i~~g~~i~l~~rl 95 (98)
T 4hcn_B 17 YFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRL 95 (98)
T ss_dssp -----CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTCBSGGGTCCTTEEEEEECBC
T ss_pred CCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEec
Confidence 34588899999 789999999999999999999999999999999999999999998 8999999999999999999998
Q ss_pred ccc
Q 012177 107 SDL 109 (469)
Q Consensus 107 sd~ 109 (469)
.++
T Consensus 96 ~GG 98 (98)
T 4hcn_B 96 RGG 98 (98)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 15
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.59 E-value=2.4e-15 Score=123.23 Aligned_cols=75 Identities=20% Similarity=0.297 Sum_probs=71.2
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCee-cccCCccccccCccCccceeeeeec
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE-LARSNSRVRDYGLADGNVLHLVLRL 106 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~-L~~D~~tL~dygI~~gstl~LvlrL 106 (469)
...|+|+| +++|++++++|.+++||.+||++|++++|+|+++|+|+|+|++ |+ |+.+|++|+|+++++|+|++++
T Consensus 8 ~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~-D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 8 HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILR-EDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCC-SSSBHHHHTCCTTSCEEEEECC
T ss_pred cCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecC-CcCCHHHcCCCCCCEEEEEEcC
Confidence 56799999 8999999999999999999999999999999999999999999 97 8999999999999999998763
No 16
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=5.2e-15 Score=118.81 Aligned_cols=78 Identities=22% Similarity=0.433 Sum_probs=73.1
Q ss_pred CCCCCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeec
Q 012177 28 KLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (469)
Q Consensus 28 ~~~~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (469)
++++..|+|+| +.+|+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|++++
T Consensus 2 ~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 2 SSGSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALA-DGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp CCSSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECC-TTSBGGGGTCCSSBCCEEECCC
T ss_pred CCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECC-CCCcHHHcCCCCCCEEEEEEeC
Confidence 34578899999 778999999999999999999999999999999999999999998 8999999999999999999876
No 17
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.59 E-value=1.8e-15 Score=121.50 Aligned_cols=77 Identities=17% Similarity=0.305 Sum_probs=72.6
Q ss_pred CCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 32 ~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
+.|+|+| +++|+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|++|. |+.+|++|+|+++++|+|++++.++
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~-d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeC-CCCCHHHcCCCCCCEEEEEEeccCC
Confidence 4699999 789999999999999999999999999999999999999999998 8999999999999999999988764
No 18
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=4.3e-15 Score=118.82 Aligned_cols=76 Identities=26% Similarity=0.253 Sum_probs=71.3
Q ss_pred ccceeeeeeecceeE-EEE-eecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012177 108 DLQAITVTTVCGKVF-EFH-VERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~-~l~-V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks 185 (469)
+.|+|+|++.+|+++ .++ |++++||.+||++|+++.|+| +++|+|+|+|+.|+|+++|++|+|+++++|||++|.+
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip--~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~~ 78 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVE--PGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS 78 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcC--hhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 468999999999985 899 999999999999999999988 9999999999999999999999999999999998753
No 19
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.58 E-value=4.9e-15 Score=121.98 Aligned_cols=77 Identities=23% Similarity=0.423 Sum_probs=72.0
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
+..|+|+| +++|+++.++|.+++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|.+|+| ++++|||+++.+..
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~-d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQ-DDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECC-CCCCHHHcCC-CCcEEEEEecCCCC
Confidence 46899999 789999999999999999999999999999999999999999998 8999999999 89999999987643
No 20
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=6.1e-15 Score=120.37 Aligned_cols=80 Identities=23% Similarity=0.336 Sum_probs=75.3
Q ss_pred CCCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeeccc
Q 012177 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 30 ~~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (469)
+...|+|+| +++|+++.++|.+++||.+||++|++++|+|+++|+|+|+|+.|. |+.+|++|+|.++++|+|++++.+
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~-d~~tL~~~~i~~g~~i~l~~~~~G 82 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQ-DWLGLGIYGIQDSDTLILSKKKGS 82 (87)
T ss_dssp CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECC-SSSBHHHHTCCTTEEEEEEECSCC
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEcc-CCCCHHHCCCCCCCEEEEEEeccC
Confidence 357899999 778999999999999999999999999999999999999999998 899999999999999999999887
Q ss_pred cc
Q 012177 109 LQ 110 (469)
Q Consensus 109 ~m 110 (469)
+.
T Consensus 83 G~ 84 (87)
T 1wh3_A 83 GP 84 (87)
T ss_dssp CS
T ss_pred CC
Confidence 63
No 21
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=5e-15 Score=118.48 Aligned_cols=75 Identities=17% Similarity=0.327 Sum_probs=69.8
Q ss_pred CCEEEEE-EeCCeEE-EEE-eCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecc
Q 012177 32 DSILIFL-SVGGSVI-PMR-VMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (469)
Q Consensus 32 ~~M~I~V-~l~G~~~-~l~-V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (469)
..|+|+| +.+|+++ +++ |.+++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|++|+|.++++|||+++++
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~-d~~tL~~~~i~~g~~i~l~~r~~ 78 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQME-DGHTLFDYEVRLNDTIQLLVRQS 78 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTTTTTCCTTCEEEEEECCC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEeCC
Confidence 3699999 7789885 999 99999999999999999999999999999999998 89999999999999999998763
No 22
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=6.6e-15 Score=120.80 Aligned_cols=81 Identities=16% Similarity=0.326 Sum_probs=75.0
Q ss_pred CCCCCEEEEE-EeCC-eEEEE-EeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeee
Q 012177 29 LSNDSILIFL-SVGG-SVIPM-RVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (469)
Q Consensus 29 ~~~~~M~I~V-~l~G-~~~~l-~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (469)
.+...|+|+| ++.| +++++ +|.+++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|++|+|.++++|||+++
T Consensus 3 ~~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~~ 81 (89)
T 1wy8_A 3 SGSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLE-NGYTLFDYDVGLNDIIQLLVR 81 (89)
T ss_dssp CCSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECC-SSSBHHHHTCCTTCEEEEEEC
T ss_pred CCCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECC-CCCCHHHCCCCCCCEEEEEEe
Confidence 3468899999 7788 79999 599999999999999999999999999999999998 899999999999999999999
Q ss_pred ccccc
Q 012177 106 LSDLQ 110 (469)
Q Consensus 106 Lsd~m 110 (469)
+.++.
T Consensus 82 ~~gG~ 86 (89)
T 1wy8_A 82 PDSGP 86 (89)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87763
No 23
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.57 E-value=5.1e-15 Score=117.01 Aligned_cols=75 Identities=28% Similarity=0.556 Sum_probs=70.1
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
|+|+| +.+|+++.++|.+++||.+||.+|+++.|+|++.|+|+|+|+.|. |+.+|++|+|++++++++++++.++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~-d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 89999 668999999999999999999999999999999999999999997 8999999999999999999988764
No 24
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.57 E-value=5.8e-15 Score=121.50 Aligned_cols=78 Identities=27% Similarity=0.294 Sum_probs=72.3
Q ss_pred ccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCCc
Q 012177 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAK 187 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks~k 187 (469)
..|+|+||+.+|+++.++|++++||.+||++|+++.+++ +++|+|+|+|+.|+|+++|.+|+| ++++|||+++....
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP--SEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCC--HHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 468999999999999999999999999999999999988 999999999999999999999999 89999999986654
Q ss_pred c
Q 012177 188 V 188 (469)
Q Consensus 188 v 188 (469)
.
T Consensus 81 ~ 81 (90)
T 4dwf_A 81 T 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 25
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.57 E-value=7.8e-15 Score=122.64 Aligned_cols=81 Identities=17% Similarity=0.301 Sum_probs=74.2
Q ss_pred CCCCCCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCC-ccccccCccCccceeeee
Q 012177 27 EKLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSN-SRVRDYGLADGNVLHLVL 104 (469)
Q Consensus 27 ~~~~~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~-~tL~dygI~~gstl~Lvl 104 (469)
+..+...|+|+| ++++ +++++|.+++||.+||.+|++++|+|+++|+|+|.|+.|. |+ .+|++|+|+++++|+|++
T Consensus 9 ~~~~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~~tL~~ygI~~gstl~lv~ 86 (94)
T 2kan_A 9 SHAAVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELA-DDYRNLNEYGITEFSEIVVFL 86 (94)
T ss_dssp SCSSSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEEC-CTTSBHHHHTCCTTEEEEEEE
T ss_pred cccCCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECC-CCcccHHHCCCCCCCEEEEEE
Confidence 344578899999 6666 8999999999999999999999999999999999999998 77 999999999999999999
Q ss_pred ecccc
Q 012177 105 RLSDL 109 (469)
Q Consensus 105 rLsd~ 109 (469)
++.++
T Consensus 87 r~~gg 91 (94)
T 2kan_A 87 KSINR 91 (94)
T ss_dssp CCCSS
T ss_pred eCCCC
Confidence 98765
No 26
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.57 E-value=5e-15 Score=121.29 Aligned_cols=74 Identities=24% Similarity=0.261 Sum_probs=71.0
Q ss_pred ccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEE-cCCCCcccccCCCCCCEEEEEEe
Q 012177 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEE-LEDQRLITDICKRNEAVIHLLVR 183 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~-LeD~~tL~dy~I~~~svI~Lv~r 183 (469)
.-|.|+|++.+|+++.++|++++||++||++|+++.|+| +++|+|+|+|+. |+|+++|++|+|+++++|+|+++
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIP--VSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcC--hHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 358999999999999999999999999999999999988 999999999999 99999999999999999999876
No 27
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.57 E-value=4.7e-15 Score=120.17 Aligned_cols=77 Identities=30% Similarity=0.506 Sum_probs=70.8
Q ss_pred CCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 32 ~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
..|+|+| +.+|++++++|.+++||.+||++|++++++|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++++.++
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~-d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECC-TTCBTTTTTCCTTCEEEEEECCC--
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECC-CCCCHHHCCCCCCCEEEEEEeccCC
Confidence 4699999 678999999999999999999999999999999999999999998 8999999999999999999998765
No 28
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.56 E-value=2.4e-15 Score=128.45 Aligned_cols=81 Identities=20% Similarity=0.431 Sum_probs=74.0
Q ss_pred CCCCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCc---------------ceEEEEcCeecccCCcccccc
Q 012177 29 LSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVK---------------KQKLVFEGRELARSNSRVRDY 92 (469)
Q Consensus 29 ~~~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~---------------~QrLvf~Gk~L~~D~~tL~dy 92 (469)
++...|+|+| +++|++++++|.+++||.+||++|+++.++|+. +|+|+|+|+.|.+|+.+|++|
T Consensus 3 ~~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dy 82 (105)
T 1v2y_A 3 SGSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDY 82 (105)
T ss_dssp CCCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHH
T ss_pred CCCCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHc
Confidence 3467799999 899999999999999999999999999999873 579999999998677999999
Q ss_pred CccCccceeeeeecccc
Q 012177 93 GLADGNVLHLVLRLSDL 109 (469)
Q Consensus 93 gI~~gstl~LvlrLsd~ 109 (469)
||+++++||+++++++.
T Consensus 83 gI~~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 83 GIRNRDEVSFIKKLGQK 99 (105)
T ss_dssp TCCSSEEEEEEECSCSC
T ss_pred CCCCCCEEEEEehhccC
Confidence 99999999999998764
No 29
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.56 E-value=4e-15 Score=124.91 Aligned_cols=79 Identities=16% Similarity=0.299 Sum_probs=74.3
Q ss_pred CCCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeeccc
Q 012177 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 30 ~~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (469)
+...|+|+| +++|++++++|.+++||.+||.+|+++.|+|+.+|+|+|+|++|. |+.+|++|+|+++++|+|++++.+
T Consensus 18 ~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~-d~~tl~dy~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQEQTG 96 (97)
T ss_dssp -CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCHHHHTCCTTCEEEEEESSSC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcC-CCCCHHHCCCCCCCEEEEEEecCC
Confidence 366799999 789999999999999999999999999999999999999999998 899999999999999999999876
Q ss_pred c
Q 012177 109 L 109 (469)
Q Consensus 109 ~ 109 (469)
+
T Consensus 97 G 97 (97)
T 1wyw_B 97 G 97 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 30
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.56 E-value=3.6e-15 Score=122.78 Aligned_cols=78 Identities=22% Similarity=0.342 Sum_probs=70.7
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
+..|+|+| +++|++++++|.+++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++++.++
T Consensus 2 ~~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 2 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE-DQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCC-TTSBHHHHHCSTTCEEEEEEC----
T ss_pred CccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 35799999 778999999999999999999999999999999999999999998 8999999999999999999988765
No 31
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.56 E-value=8.6e-15 Score=120.01 Aligned_cols=73 Identities=25% Similarity=0.460 Sum_probs=69.6
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeee
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (469)
+..|+|+| +++|+++.++|.+++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|++|+| +|++|||++|
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQ-DDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTC-TTEEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECC-CCCcHHHcCC-CCcEEEEEEC
Confidence 67799999 778999999999999999999999999999999999999999998 8999999999 8999999875
No 32
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.56 E-value=8.7e-15 Score=121.78 Aligned_cols=79 Identities=34% Similarity=0.623 Sum_probs=72.0
Q ss_pred CEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeeccccce
Q 012177 33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQA 111 (469)
Q Consensus 33 ~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~m~ 111 (469)
.|+|+| +++|+++.++|.+++||.+||.+|++++|+|++.|+|+|+|+.|. |+.+|++|+|.++++|+|++++.++..
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~-d~~tL~~~~i~~~~~i~l~~r~~gG~~ 79 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGYAD 79 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECCCC---
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEEcCCCCc
Confidence 389999 789999999999999999999999999999999999999999998 899999999999999999999998865
Q ss_pred e
Q 012177 112 I 112 (469)
Q Consensus 112 I 112 (469)
.
T Consensus 80 ~ 80 (96)
T 3k9o_B 80 L 80 (96)
T ss_dssp -
T ss_pred c
Confidence 4
No 33
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=8.1e-15 Score=118.60 Aligned_cols=77 Identities=32% Similarity=0.563 Sum_probs=72.7
Q ss_pred CCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 32 ~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
..|+|+| +.+|+++.++|.+++||.+||++|+++.++|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++++.++
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~-d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEECcCC
Confidence 4699999 778999999999999999999999999999999999999999998 8999999999999999999998765
No 34
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.56 E-value=1.1e-14 Score=115.03 Aligned_cols=75 Identities=36% Similarity=0.621 Sum_probs=71.3
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
|+|+| +.+|+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|.+++++++++++.++
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~-d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 89999 678999999999999999999999999999999999999999998 8999999999999999999998764
No 35
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.56 E-value=7.6e-15 Score=120.90 Aligned_cols=75 Identities=25% Similarity=0.377 Sum_probs=71.0
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks~ 186 (469)
|+|+|++.+|+++.++|++++||.+||++|+++.++| +++|+|+|+|+.|+|+.+|++|+|+++++|+|++|...
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~G 75 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRG 75 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC-
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC--hhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCC
Confidence 7899999999999999999999999999999999988 99999999999999999999999999999999988443
No 36
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.56 E-value=1e-14 Score=134.60 Aligned_cols=98 Identities=31% Similarity=0.488 Sum_probs=82.5
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccccee
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAI 112 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~m~I 112 (469)
|+|+| +++|++++++|.+++||.+||.+|++++|+|+++|+|+|+|++|. |+.+|++|+|+++++|||++++.++...
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~y~I~~gstI~Lvlrl~GG~k~ 79 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGGGE 79 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECCCC---C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCcccc-CcCcHHHcCCCCCCEEEEEEEecccccc
Confidence 89999 889999999999999999999999999999999999999999998 8999999999999999999999998877
Q ss_pred eeeeec-ce--eEEEEeecCchH
Q 012177 113 TVTTVC-GK--VFEFHVERGRNV 132 (469)
Q Consensus 113 ~Vkt~~-Gk--~~~l~V~~~~TV 132 (469)
.|+... |. +-.+.+.++.++
T Consensus 80 ~vkfs~~Gd~g~~~i~l~~~~~~ 102 (169)
T 3l0w_B 80 TIKFVADGDIGSGSVIIKPFVDM 102 (169)
T ss_dssp CEEEEEECSSCEEEEEECCBCCS
T ss_pred cccccccCcccceeEEEecCCCC
Confidence 776542 22 233455454444
No 37
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.55 E-value=4.4e-15 Score=125.64 Aligned_cols=73 Identities=21% Similarity=0.176 Sum_probs=68.8
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeee
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (469)
...|+|+| ++.|++++++|.+++||.+||++|++++|+|+++|+|+|+|++|. |+.+|.+|+|+++++|+|+.
T Consensus 26 ~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~-D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFK-DHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp CCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECC-SSCBHHHHTCCTTEEEEEEC
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECC-CCCCHHHcCCCCCCEEEEEe
Confidence 34499999 788999999999999999999999999999999999999999997 89999999999999999874
No 38
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.55 E-value=9.1e-15 Score=120.44 Aligned_cols=77 Identities=30% Similarity=0.582 Sum_probs=68.7
Q ss_pred CCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 32 ~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
..|+|+| +++|+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|.++++|+|++++.++
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBSGGGTCCTTCEEEEEC-----
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 4699999 899999999999999999999999999999999999999999998 8999999999999999999998765
No 39
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.55 E-value=1.6e-14 Score=117.21 Aligned_cols=77 Identities=23% Similarity=0.302 Sum_probs=70.8
Q ss_pred cccceeeeeeecceeEEEEeecCchHHHHHHHHHHh---cCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012177 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKK---GREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (469)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~---~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~r 183 (469)
+..|+|+|++.+|+.+.++|++++||.+||++|++. .+++ +++|+|+|+|+.|+|+++|++|+|+++++|+|+.+
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~ 80 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT 80 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCC--GGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCC--HHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEc
Confidence 456999999999999999999999999999999998 7887 99999999999999999999999999999999887
Q ss_pred eC
Q 012177 184 KS 185 (469)
Q Consensus 184 ks 185 (469)
++
T Consensus 81 ~~ 82 (85)
T 2wyq_A 81 KT 82 (85)
T ss_dssp --
T ss_pred CC
Confidence 65
No 40
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.54 E-value=5.9e-15 Score=121.93 Aligned_cols=74 Identities=14% Similarity=0.324 Sum_probs=69.4
Q ss_pred ceeeeeeecceeEEEEee--cCchHHHHHHHH-HHhcCCCCCCCceEEEECCEEcCCCCcccccCC-CCCCEEEEEEeeC
Q 012177 110 QAITVTTVCGKVFEFHVE--RGRNVGYVKQQI-AKKGREFVDLKNQELICDGEELEDQRLITDICK-RNEAVIHLLVRKS 185 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~--~~~TV~~LK~kI-~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I-~~~svI~Lv~rks 185 (469)
|+|+||+.+|++++++|+ +++||.+||++| +++.|+| +++|+|+|+|+.|+|+.+|++|+| +++++|+|+.++.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~ 79 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASH--ISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN 79 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSS--STTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCC--hHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence 789999999999998877 999999999999 9999988 999999999999999999999999 7999999988753
No 41
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.54 E-value=9.1e-15 Score=121.80 Aligned_cols=78 Identities=17% Similarity=0.310 Sum_probs=70.6
Q ss_pred CCCCEEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 30 ~~~~M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
....|+|+|.. |++++++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++++.++
T Consensus 16 ~~~~m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 16 PRGSMQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLE-DEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp ----CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECC-TTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred CCCcEEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEecCCC
Confidence 46789999955 899999999999999999999999999999999999999998 8999999999999999999998764
No 42
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.54 E-value=1.3e-14 Score=122.50 Aligned_cols=77 Identities=13% Similarity=0.308 Sum_probs=69.9
Q ss_pred cccceeeeeeecceeEEEE--eecCchHHHHHHHH-HHhcCCCCCCCceEEEECCEEcCCCCcccccCC-CCCCEEEEEE
Q 012177 107 SDLQAITVTTVCGKVFEFH--VERGRNVGYVKQQI-AKKGREFVDLKNQELICDGEELEDQRLITDICK-RNEAVIHLLV 182 (469)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~--V~~~~TV~~LK~kI-~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I-~~~svI~Lv~ 182 (469)
...|+|+||+.+|++++++ |++++||.+||++| ++..|++ +++|+|+|+|+.|+|..+|++|+| +++++|+|++
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip--~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmv 94 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASH--ISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMI 94 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSC--GGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCC--hhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEE
Confidence 4569999999999988875 55999999999999 8888887 999999999999999999999999 9999999998
Q ss_pred eeC
Q 012177 183 RKS 185 (469)
Q Consensus 183 rks 185 (469)
+++
T Consensus 95 skp 97 (98)
T 4a20_A 95 KPN 97 (98)
T ss_dssp CCC
T ss_pred eCC
Confidence 865
No 43
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.54 E-value=1.5e-14 Score=119.59 Aligned_cols=76 Identities=30% Similarity=0.406 Sum_probs=72.1
Q ss_pred cccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
...|+|+||+.+|+++.++|++++||.+||++|+++.|++ +++|+|+|+|+.|+|+.+|.+|+|+++++|+|++|.
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCC--hhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence 3569999999999999999999999999999999999988 999999999999999999999999999999998773
No 44
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.54 E-value=8.3e-15 Score=123.93 Aligned_cols=71 Identities=14% Similarity=0.102 Sum_probs=68.8
Q ss_pred cceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012177 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv 181 (469)
.|+|+||+.+|++++++|++++||.+||++|++++|+| +++|+|+|+|+.|+|+++|++|+|+++++|+|+
T Consensus 28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip--~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTR--WNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCC--GGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC--HHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 38999999999999999999999999999999999998 999999999999999999999999999999986
No 45
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.54 E-value=8.7e-15 Score=124.93 Aligned_cols=77 Identities=13% Similarity=0.188 Sum_probs=70.3
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCCcc
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAKV 188 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks~kv 188 (469)
|+|+||+.+|+++.++|++++||.+||++|+++.|++ +++|+|+|+|+.|+|+++|++|+|+++++|+|+++++...
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~~ 78 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCE--ESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST 78 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSC--GGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC----
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--hhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCCC
Confidence 7899999999999999999999999999999999988 9999999999999999999999999999999999876543
No 46
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.53 E-value=3.2e-14 Score=118.80 Aligned_cols=77 Identities=19% Similarity=0.315 Sum_probs=71.9
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHh---cCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKK---GREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~---~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks~ 186 (469)
|+|+|++.+|+.+.++|++++||.+||++|++. .|++ +++|+|+|+|+.|+|+.+|++|+|+++++|+|++++..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~ 78 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFP--VAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCC--TTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCC--hhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCC
Confidence 789999999999999999999999999999999 7887 99999999999999999999999999999999988655
Q ss_pred cc
Q 012177 187 KV 188 (469)
Q Consensus 187 kv 188 (469)
..
T Consensus 79 ~~ 80 (95)
T 1uel_A 79 AV 80 (95)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 47
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.53 E-value=1.4e-14 Score=116.19 Aligned_cols=74 Identities=12% Similarity=0.228 Sum_probs=71.1
Q ss_pred cceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
.|+|+|++.+|+++.++|++++||.+||++|+++.|+| +++|+|+|+|+.|+|+++|++|+++++++|+|+++.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~--~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~ 76 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP--MNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 76 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECC
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCC--cccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEec
Confidence 48899999999999999999999999999999999998 999999999999999999999999999999998874
No 48
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.53 E-value=1e-14 Score=136.87 Aligned_cols=84 Identities=32% Similarity=0.510 Sum_probs=79.9
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
.-.|+|+| +++|++++++|.+++||.+||++|++++|+|+++|+|+|+|++|. |+.+|++|+|+++++|||++++.++
T Consensus 103 ~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~-D~~tL~dygI~~gstI~LvlrlrGG 181 (189)
T 3q3f_A 103 HYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 181 (189)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECC-TTCBGGGGTCCTTCEEEECCCCCCC
T ss_pred ccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECC-CCCCHHHCCCCCCCEEEEEEEcCCC
Confidence 34499999 789999999999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred ceeeee
Q 012177 110 QAITVT 115 (469)
Q Consensus 110 m~I~Vk 115 (469)
..++||
T Consensus 182 ~~~fvk 187 (189)
T 3q3f_A 182 GQTFTK 187 (189)
T ss_dssp CCCCCC
T ss_pred CcceEe
Confidence 999886
No 49
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.53 E-value=2.3e-14 Score=123.35 Aligned_cols=78 Identities=35% Similarity=0.576 Sum_probs=73.5
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
...|+|+| +++|+++.++|.+++||.+||.+|+++.|+|+.+|+|+|+|+.|. |+.+|++|+|+++++|||++++.++
T Consensus 33 ~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred CccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEecCCC
Confidence 45799999 689999999999999999999999999999999999999999998 8999999999999999999998764
No 50
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.52 E-value=3.8e-14 Score=123.08 Aligned_cols=79 Identities=18% Similarity=0.267 Sum_probs=70.7
Q ss_pred cccceeeeeeecceeEEEEeecCchHHHHHHHHHH------hcCCCCCCCceEEEECCEEcCCCCcccccCCCCC--CEE
Q 012177 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAK------KGREFVDLKNQELICDGEELEDQRLITDICKRNE--AVI 178 (469)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~------~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~--svI 178 (469)
.+.|.|+|||++|++++++|++++||.+||++|+. +++++.++++|||+|+|+.|+|+++|++|+|+.+ ++|
T Consensus 14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tl 93 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 93 (116)
T ss_dssp SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 45699999999999999999999999999999999 6676555999999999999999999999998755 679
Q ss_pred EEEEeeC
Q 012177 179 HLLVRKS 185 (469)
Q Consensus 179 ~Lv~rks 185 (469)
||++|..
T Consensus 94 hLvlr~~ 100 (116)
T 1wgh_A 94 HLVARET 100 (116)
T ss_dssp EEEECSS
T ss_pred EEEccCC
Confidence 9988744
No 51
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=7.9e-15 Score=121.17 Aligned_cols=72 Identities=15% Similarity=0.295 Sum_probs=67.4
Q ss_pred EEEEE-EeCCeEEEEEeC--CCCcHHHHHHHH-HHHhCCCCcceEEEEcCeecccCCccccccCc-cCccceeeeeec
Q 012177 34 ILIFL-SVGGSVIPMRVM--ESDSIASVKLRI-QSYNGFFVKKQKLVFEGRELARSNSRVRDYGL-ADGNVLHLVLRL 106 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~--~sdTV~~LK~kI-q~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI-~~gstl~LvlrL 106 (469)
|+|+| ++.|++++++|+ +++||.+||++| +++.|+|+++|||+|+|+.|. |+.+|++|+| .++++|+|.++.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~-D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLH-DNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECC-TTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECc-CcCCHHHcCCCCCCCEEEEEcCC
Confidence 89999 899999988866 999999999999 999999999999999999998 8999999999 799999998764
No 52
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.52 E-value=3.3e-14 Score=112.27 Aligned_cols=73 Identities=26% Similarity=0.386 Sum_probs=70.1
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
|+|+|++.+|+++.+++++++||.+||++|++..++| +++|+|+|+|+.|+|+.+|++|+|+++++|++++|.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~--~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLAL 73 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcC--hHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999988 999999999999999999999999999999998874
No 53
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.52 E-value=4.1e-14 Score=114.79 Aligned_cols=76 Identities=21% Similarity=0.432 Sum_probs=69.5
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHH---hCCCCcceEEEEcCeecccCCccccccCccCccceeeeeec
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSY---NGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~---~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (469)
+..|+|+| +.+|++++++|.+++||.+||.+|+++ +|+|+++|+|+|+|+.|. |+.+|++|+|+++++|+|+++.
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILS-DDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECC-TTSBGGGGCCCTTSEEEEEEC-
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECc-CCCCHHHcCCCCCCEEEEEEcC
Confidence 45799999 778999999999999999999999998 899999999999999998 8999999999999999998764
Q ss_pred c
Q 012177 107 S 107 (469)
Q Consensus 107 s 107 (469)
.
T Consensus 82 ~ 82 (85)
T 2wyq_A 82 T 82 (85)
T ss_dssp -
T ss_pred C
Confidence 3
No 54
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.52 E-value=1.9e-14 Score=117.47 Aligned_cols=75 Identities=27% Similarity=0.391 Sum_probs=71.6
Q ss_pred ccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
..|+|+|++.+|+++.++|++++||.+||++|++..++| +++|+|+|+|+.|+|+.+|.+|+|+++++|+|++|.
T Consensus 11 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl 85 (88)
T 3dbh_I 11 GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRL 85 (88)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCC
T ss_pred CcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC--HHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 458999999999999999999999999999999999988 999999999999999999999999999999998774
No 55
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.51 E-value=2.5e-14 Score=120.03 Aligned_cols=76 Identities=12% Similarity=0.236 Sum_probs=72.6
Q ss_pred cccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
+..|+|+|++.+|+++.++|++++||.+||++|+++.|++ +++|+|+|+|+.|+|+++|++|+|+++++|+|+++.
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip--~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~ 94 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP--MNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 94 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESS
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--hhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEec
Confidence 4569999999999999999999999999999999999998 999999999999999999999999999999999874
No 56
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.51 E-value=2.8e-14 Score=120.39 Aligned_cols=76 Identities=16% Similarity=0.315 Sum_probs=68.4
Q ss_pred CCCCEEEEE-EeCCeEEEE--EeCCCCcHHHHHHHH-HHHhCCCCcceEEEEcCeecccCCccccccCc-cCccceeeee
Q 012177 30 SNDSILIFL-SVGGSVIPM--RVMESDSIASVKLRI-QSYNGFFVKKQKLVFEGRELARSNSRVRDYGL-ADGNVLHLVL 104 (469)
Q Consensus 30 ~~~~M~I~V-~l~G~~~~l--~V~~sdTV~~LK~kI-q~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI-~~gstl~Lvl 104 (469)
....|+|+| +++|+++++ +|.+++||.+||++| +++.|+|+++|||+|.|+.|. |+.+|++|+| ++|++|+|++
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~-D~~tL~dy~I~~~g~ti~lmv 94 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLH-DNLFLSDLKVTPANSTITVMI 94 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEEC-TTCBGGGSCCBTTBCEEEEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECc-CcCCHHHcCcCCCCCEEEEEE
Confidence 477899999 889987777 566999999999999 989999999999999999998 8999999999 9999999987
Q ss_pred ec
Q 012177 105 RL 106 (469)
Q Consensus 105 rL 106 (469)
+-
T Consensus 95 sk 96 (98)
T 4a20_A 95 KP 96 (98)
T ss_dssp CC
T ss_pred eC
Confidence 63
No 57
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.51 E-value=4.3e-14 Score=117.55 Aligned_cols=76 Identities=32% Similarity=0.418 Sum_probs=71.8
Q ss_pred cceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012177 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (469)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks~ 186 (469)
+|+|+|++.+|+++.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+.+|.+|+|+++++|+|+++...
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~g 76 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 76 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCC--hhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCC
Confidence 48999999999999999999999999999999999988 99999999999999999999999999999999988544
No 58
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.51 E-value=8.1e-15 Score=124.18 Aligned_cols=94 Identities=20% Similarity=0.270 Sum_probs=67.7
Q ss_pred CccccccCccCccceeeeeeccccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCC
Q 012177 86 NSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQR 165 (469)
Q Consensus 86 ~~tL~dygI~~gstl~LvlrLsd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~ 165 (469)
..++++|.|. +|.++.++-.-.+.|+|++ +|+++.++|++++||.+||++|+++.|++ +++|+|+|+|+.|+|+.
T Consensus 7 ~~~~~~~~~~--~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~ 81 (101)
T 3m63_B 7 HHPMSDYDIP--TTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIP--VANQRLIYSGKILKDDQ 81 (101)
T ss_dssp ------------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCC--STTCCEEETTEECCTTS
T ss_pred cCCccccCCC--cceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcC--hHHEEEEECCEECCCcC
Confidence 3567788874 5566555555557778887 89999999999999999999999999988 99999999999999999
Q ss_pred cccccCCCCCCEEEEEEee
Q 012177 166 LITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 166 tL~dy~I~~~svI~Lv~rk 184 (469)
+|++|+|+++++|+|+.+.
T Consensus 82 tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 82 TVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp BTTTTTCCTTEEEEECCCC
T ss_pred cHHHCCCCCCCEEEEEeCC
Confidence 9999999999999997653
No 59
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.51 E-value=2.2e-14 Score=118.09 Aligned_cols=77 Identities=19% Similarity=0.168 Sum_probs=71.2
Q ss_pred ccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012177 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks~ 186 (469)
..|+|+|++.+|+++.++|++++||.+||++|++..|+| +++|+|+|+|+.|+|+++|++|+|+++++|+|+++...
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~g 79 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSC--TTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC---
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCC--hhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCC
Confidence 458999999999999999999999999999999999988 99999999999999999999999999999999987543
No 60
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.51 E-value=2.2e-14 Score=124.71 Aligned_cols=74 Identities=18% Similarity=0.196 Sum_probs=65.8
Q ss_pred EEEEE-EeCC-eEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCcc-------Cccceeeee
Q 012177 34 ILIFL-SVGG-SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLA-------DGNVLHLVL 104 (469)
Q Consensus 34 M~I~V-~l~G-~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~-------~gstl~Lvl 104 (469)
|++|| ...+ .+++++|.+++||.+||.+|+.++|+|+++|||+|+|++|. |+.+|++|||+ ++++|||++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~Le-D~~TLsdy~I~~~~a~~q~~stL~L~l 79 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLD-DGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBHHHHTCCTTTSBTTBCEEEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECC-CCCCHHHcCcccccccCCCCCEEEEEe
Confidence 55666 3344 57999999999999999999999999999999999999998 99999999999 799999999
Q ss_pred ecccc
Q 012177 105 RLSDL 109 (469)
Q Consensus 105 rLsd~ 109 (469)
| .|+
T Consensus 80 r-~~g 83 (118)
T 2fnj_B 80 R-ADD 83 (118)
T ss_dssp B-SSS
T ss_pred c-CCC
Confidence 8 443
No 61
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.51 E-value=4.1e-14 Score=114.57 Aligned_cols=75 Identities=29% Similarity=0.385 Sum_probs=71.1
Q ss_pred cceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012177 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (469)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks 185 (469)
.|+|+|++.+|+++.++|++++||.+||++|+++.++| +++|+|+|+|+.|+|+.+|++|+|+++++|+|++|..
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip--~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~ 77 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLR 77 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--HHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEecc
Confidence 48999999999999999999999999999999999988 9999999999999999999999999999999998843
No 62
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.51 E-value=3.9e-14 Score=128.42 Aligned_cols=79 Identities=22% Similarity=0.334 Sum_probs=73.4
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
+..|+|+| +++|++++++|.+++||.+||++|++++|+|+++|+|+|+|+.|. |+.+|++|+|+++++|||+++++++
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~-d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE-DQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecC-CCCCHHHcCCCCCCEEEEEEecCCC
Confidence 67799999 788999999999999999999999999999999999999999998 8999999999999999999999876
Q ss_pred c
Q 012177 110 Q 110 (469)
Q Consensus 110 m 110 (469)
-
T Consensus 158 ~ 158 (159)
T 3rt3_B 158 G 158 (159)
T ss_dssp -
T ss_pred C
Confidence 3
No 63
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.50 E-value=4.5e-14 Score=122.45 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=67.9
Q ss_pred EEEEE--EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccC-------ccceeeee
Q 012177 34 ILIFL--SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLAD-------GNVLHLVL 104 (469)
Q Consensus 34 M~I~V--~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~-------gstl~Lvl 104 (469)
|.+|| .....++.++|.+++||.+||.+|+.++|+|+++|||+|+|+.|. |+++|++|||++ +++|||++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~Le-D~kTL~dy~I~~~ta~~q~~atl~Lvl 79 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLD-DGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTTTTTCCGGGSBTTBCEEEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECC-CcCCHHHcCCCcCcccCCCCCEEEEEE
Confidence 56777 445569999999999999999999999999999999999999998 999999999999 99999999
Q ss_pred eccc
Q 012177 105 RLSD 108 (469)
Q Consensus 105 rLsd 108 (469)
|..+
T Consensus 80 r~~~ 83 (118)
T 4ajy_B 80 RADD 83 (118)
T ss_dssp CCSS
T ss_pred ecCC
Confidence 9744
No 64
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.50 E-value=3e-14 Score=118.34 Aligned_cols=78 Identities=18% Similarity=0.245 Sum_probs=71.7
Q ss_pred CCCEEEEE-EeCCe--EEEEEeCCCCcHHHHHHHHHHHh--CCCCcceEEEEcCeecccCCcccccc--CccCccceeee
Q 012177 31 NDSILIFL-SVGGS--VIPMRVMESDSIASVKLRIQSYN--GFFVKKQKLVFEGRELARSNSRVRDY--GLADGNVLHLV 103 (469)
Q Consensus 31 ~~~M~I~V-~l~G~--~~~l~V~~sdTV~~LK~kIq~~~--Gip~~~QrLvf~Gk~L~~D~~tL~dy--gI~~gstl~Lv 103 (469)
...|+|+| +.+++ +++++|.+++||.+||++|++++ |+|+++|||+|.|+.|. |+.+|++| +|+++++|||+
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~-D~~tL~~~~~~i~~~~~i~lv 83 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLL-DHQCLRDLLPKQEKRHVLHLV 83 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECC-SSSCHHHHSCSSSCSEEEEEE
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECc-CcCCHHHHhcCCCCCCEEEEE
Confidence 56799999 67777 68888889999999999999998 99999999999999998 88999999 99999999999
Q ss_pred eecccc
Q 012177 104 LRLSDL 109 (469)
Q Consensus 104 lrLsd~ 109 (469)
+++.++
T Consensus 84 ~~~~gg 89 (93)
T 1wgd_A 84 CNVKSG 89 (93)
T ss_dssp CCCCCC
T ss_pred eCCCCC
Confidence 988765
No 65
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.50 E-value=4.4e-14 Score=116.33 Aligned_cols=76 Identities=28% Similarity=0.414 Sum_probs=69.6
Q ss_pred ccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012177 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks 185 (469)
.+|+|+|++.+|+++.++|++++||.+||++|+++.++| +++|+|+|+|+.|+|+.+|++|+|+++++|+|+++..
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~ 83 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 83 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC---
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcC--hhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 379999999999999999999999999999999999988 9999999999999999999999999999999988743
No 66
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.50 E-value=6.7e-14 Score=110.51 Aligned_cols=73 Identities=33% Similarity=0.452 Sum_probs=70.1
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
|+|+|++.+|+++.+++++++||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|+++++++|+++++.
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~--~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRL 73 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999988 999999999999999999999999999999998874
No 67
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.50 E-value=5.9e-14 Score=114.50 Aligned_cols=75 Identities=19% Similarity=0.131 Sum_probs=71.8
Q ss_pred ccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
..|+|+|++.+|+++.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+++|++|+|+++++|+|+++.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~--~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLP--KKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKK 80 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCC--TTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECS
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCC--hHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEec
Confidence 469999999999999999999999999999999999988 999999999999999999999999999999999874
No 68
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=5.1e-14 Score=112.98 Aligned_cols=75 Identities=21% Similarity=0.322 Sum_probs=71.1
Q ss_pred ccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
..|+|+|++.+|+.+.+++++++||++||++|++..+++ +++|+|+|+|+.|+|+++|++|+|+++++|+|+++.
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVP--VRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCC--TTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--HHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 458999999999999999999999999999999999988 999999999999999999999999999999998764
No 69
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.50 E-value=8.2e-14 Score=121.01 Aligned_cols=78 Identities=24% Similarity=0.303 Sum_probs=70.8
Q ss_pred CCCCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHH------HhCC--CCcceEEEEcCeecccCCccccccCccCc--
Q 012177 29 LSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQS------YNGF--FVKKQKLVFEGRELARSNSRVRDYGLADG-- 97 (469)
Q Consensus 29 ~~~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~------~~Gi--p~~~QrLvf~Gk~L~~D~~tL~dygI~~g-- 97 (469)
.+.+.|+|+| +++|++++++|.+++||.+||++|++ ++++ ++++|||+|.|++|. |+.+|++|+|+.+
T Consensus 12 ~~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~Le-D~~TL~~y~I~~~~~ 90 (116)
T 1wgh_A 12 VPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLH-GNVTLGALKLPFGKT 90 (116)
T ss_dssp CCSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEEC-SSCBTTTTTCCSSCE
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCC-CCCcHHHcCCCCCCc
Confidence 3578899999 78999999999999999999999999 6675 699999999999998 8999999999765
Q ss_pred cceeeeeecc
Q 012177 98 NVLHLVLRLS 107 (469)
Q Consensus 98 stl~LvlrLs 107 (469)
.+|||++++.
T Consensus 91 ~tlhLvlr~~ 100 (116)
T 1wgh_A 91 TVMHLVARET 100 (116)
T ss_dssp EEEEEEECSS
T ss_pred eEEEEEccCC
Confidence 6899998875
No 70
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.50 E-value=3.9e-14 Score=118.93 Aligned_cols=76 Identities=32% Similarity=0.435 Sum_probs=71.4
Q ss_pred cccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
...|+|+||+.+|+++.++|++++||.+||++|+++.++| +++|+|+|+|+.|+|+.+|++|+|+++++|+|++|.
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl 95 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 95 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCC--hhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 4569999999999999999999999999999999999988 999999999999999999999999999999999874
No 71
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.50 E-value=4.8e-14 Score=120.21 Aligned_cols=79 Identities=18% Similarity=0.276 Sum_probs=72.9
Q ss_pred CCCCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecc
Q 012177 29 LSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (469)
Q Consensus 29 ~~~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (469)
.+...|+|+| +++|+++.++|.+++||.+||.+|+++.|+++.+|+|+|+|+.|. |+.+|++|+|++|++|||+++..
T Consensus 19 ~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~ygI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 19 NSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLT-DKMKFEELKIPKDYVVQVIVSQP 97 (106)
T ss_dssp --CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECC-TTSHHHHCCCSSSCEEEEECCCS
T ss_pred CCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEeCC
Confidence 4577899999 778999999999999999999999999999999999999999997 89999999999999999998765
Q ss_pred c
Q 012177 108 D 108 (469)
Q Consensus 108 d 108 (469)
+
T Consensus 98 ~ 98 (106)
T 1ttn_A 98 V 98 (106)
T ss_dssp S
T ss_pred C
Confidence 3
No 72
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.24 E-value=1.8e-15 Score=120.28 Aligned_cols=74 Identities=22% Similarity=0.410 Sum_probs=71.0
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeeccc
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (469)
|+|+| +.+|+++.++|.+++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|++|+|.++++|||++++++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELP-NHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 89999 788999999999999999999999999999999999999999998 899999999999999999998875
No 73
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.49 E-value=9.6e-14 Score=113.84 Aligned_cols=77 Identities=23% Similarity=0.233 Sum_probs=71.8
Q ss_pred ccceeeeeeecc-eeEEE-EeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012177 108 DLQAITVTTVCG-KVFEF-HVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (469)
Q Consensus 108 d~m~I~Vkt~~G-k~~~l-~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks 185 (469)
..|+|+|++.+| +++.+ +|++++||.+||++|+++.++| +++|+|+|+|+.|+|+++|.+|+|+++++|||+++..
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 83 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVR--PECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPD 83 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCC--TTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCC
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcC--hhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCC
Confidence 469999999999 79999 5999999999999999999988 9999999999999999999999999999999998844
Q ss_pred C
Q 012177 186 A 186 (469)
Q Consensus 186 ~ 186 (469)
.
T Consensus 84 g 84 (89)
T 1wy8_A 84 S 84 (89)
T ss_dssp C
T ss_pred C
Confidence 3
No 74
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.49 E-value=2.8e-14 Score=121.78 Aligned_cols=73 Identities=18% Similarity=0.356 Sum_probs=68.4
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecc
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (469)
|+|+| +++|+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+++..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQ-DSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECC-TTSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECC-CcCCHHHcCCCCCCEEEEEEcCC
Confidence 88999 679999999999999999999999999999999999999999998 89999999999999999998754
No 75
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.49 E-value=1.2e-13 Score=109.73 Aligned_cols=72 Identities=22% Similarity=0.287 Sum_probs=68.5
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
|+|+|++ +|+.+.++++++.||.+||++|++..|++ +++|+|+|+|+.|+|+.+|++|+|+++++|+|+.+.
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIP--VANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCC--HHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 8899999 99999999999999999999999999988 999999999999999999999999999999997653
No 76
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.49 E-value=7.2e-14 Score=112.95 Aligned_cols=75 Identities=31% Similarity=0.380 Sum_probs=71.4
Q ss_pred cceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012177 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (469)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks 185 (469)
.|+|+|++.+|+++.+++++++||.+||++|+++.++| +++|+|+|+|+.|+|+.+|++|+|+++++|+|++|..
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~--~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~ 77 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLR 77 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCC
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC--hHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECc
Confidence 48899999999999999999999999999999999988 9999999999999999999999999999999998743
No 77
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.48 E-value=1.4e-13 Score=109.25 Aligned_cols=71 Identities=27% Similarity=0.463 Sum_probs=66.8
Q ss_pred EEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeee
Q 012177 34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (469)
Q Consensus 34 M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (469)
|+|+|..+|++++++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+.+
T Consensus 5 m~i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILK-DDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcC-CCCCHHHcCCCCCCEEEEEEc
Confidence 88999339999999999999999999999999999999999999999998 889999999999999998764
No 78
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.48 E-value=1.4e-13 Score=118.23 Aligned_cols=78 Identities=35% Similarity=0.576 Sum_probs=73.2
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
...|+|+| +.+|+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++++.++
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECC-SSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 46899999 678999999999999999999999999999999999999999998 8999999999999999999998764
No 79
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.48 E-value=1e-13 Score=115.68 Aligned_cols=73 Identities=18% Similarity=0.424 Sum_probs=69.0
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHH---hCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecc
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSY---NGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~---~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (469)
|+|+| +++|+.++++|.+++||.+||.+|+++ +|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+++..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~-D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILN-DDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECC-TTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECC-CcCcHHHCCCCCCCEEEEEEeCC
Confidence 89999 778999999999999999999999999 899999999999999997 88999999999999999988754
No 80
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.48 E-value=2.4e-13 Score=119.48 Aligned_cols=77 Identities=21% Similarity=0.245 Sum_probs=69.7
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
...|+|+| +. |+++.++|.+++||.+||.+|+++.|+++++|+|+|+|+.|. |+.+|.+|+|+++++|+|++++.++
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILK-DQDTLIQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEES-TTSCGGGTTCSSSEEEEEEEC----
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEeccCCC
Confidence 56799999 55 999999999999999999999999999999999999999997 8999999999999999999988755
No 81
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.48 E-value=8.3e-14 Score=122.40 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=71.7
Q ss_pred CCCEEEEE-EeCCeEE-EEEeCCCCcHHHHHHHH-----HHHhCCCC--cceEEEEcCeecccCCccccccCccCc----
Q 012177 31 NDSILIFL-SVGGSVI-PMRVMESDSIASVKLRI-----QSYNGFFV--KKQKLVFEGRELARSNSRVRDYGLADG---- 97 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~-~l~V~~sdTV~~LK~kI-----q~~~Gip~--~~QrLvf~Gk~L~~D~~tL~dygI~~g---- 97 (469)
.+.|+|+| +++|+.+ ++++++++||.+||++| +.++|+|+ ++|||+|+|+.|+ |+.+|++|+|+.+
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~Le-D~~TLsdy~I~~~~~~~ 92 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLE-NSKTVKDYRSPVSNLAG 92 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECC-TTSBGGGGSCCTTSCTT
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECc-CCCcHHHcCCCcCCccC
Confidence 58999999 8999888 89999999999999999 66788986 8999999999998 9999999999998
Q ss_pred --cceeeeeecccc
Q 012177 98 --NVLHLVLRLSDL 109 (469)
Q Consensus 98 --stl~LvlrLsd~ 109 (469)
.++||++++.++
T Consensus 93 ~v~tmhlVlrl~g~ 106 (126)
T 1se9_A 93 AVTTMHVIIQAPVT 106 (126)
T ss_dssp CCEEEEEEECCCSS
T ss_pred CcEEEEEEeccCCc
Confidence 789999998865
No 82
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.48 E-value=9.6e-14 Score=117.52 Aligned_cols=80 Identities=16% Similarity=0.292 Sum_probs=71.2
Q ss_pred CCCCEEEEE-EeCC----eEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeee
Q 012177 30 SNDSILIFL-SVGG----SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (469)
Q Consensus 30 ~~~~M~I~V-~l~G----~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (469)
+...|+|+| ...+ ++++++|.+++||.+||++|++++|+|+++|+|+|+|+.|.+|+.+|.+|+|+++++|+|+.
T Consensus 4 ~~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~ 83 (102)
T 1v5o_A 4 GSSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQ 83 (102)
T ss_dssp CSCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECB
T ss_pred CCCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEE
Confidence 356699999 5433 79999999999999999999999999999999999999998443799999999999999999
Q ss_pred ecccc
Q 012177 105 RLSDL 109 (469)
Q Consensus 105 rLsd~ 109 (469)
+.+++
T Consensus 84 ~~~gg 88 (102)
T 1v5o_A 84 KDNVG 88 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87655
No 83
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=1e-13 Score=118.15 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=72.8
Q ss_pred ccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012177 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks~ 186 (469)
..|+|+||+.+|+++.++|++++||.+||++|+++.|++ +++|+|+|+|+.|+|+++|.+|+|+++++|||+++++.
T Consensus 22 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~ 98 (106)
T 1ttn_A 22 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVE--PGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPV 98 (106)
T ss_dssp CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCC--STTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSS
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcC--cccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 458999999999999999999999999999999999988 99999999999999999999999999999999887554
No 84
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=1.1e-13 Score=117.00 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=72.0
Q ss_pred CCCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeeccc
Q 012177 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 30 ~~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (469)
.++.|+|+| +.+|+ +.++|.+++||.+||++|+++.|+|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++++++
T Consensus 19 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~ygI~~gstI~l~~r~~~ 96 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILK-DPDSLAQCGVRDGLTVHLVIKRQH 96 (100)
T ss_dssp CTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBHHHHTCCTTCEEEEEECCCC
T ss_pred CCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECC-CcCcHHHCCCCCCCEEEEEEcCCC
Confidence 478899999 66776 799999999999999999999999999999999999998 899999999999999999998765
Q ss_pred c
Q 012177 109 L 109 (469)
Q Consensus 109 ~ 109 (469)
+
T Consensus 97 ~ 97 (100)
T 1yqb_A 97 R 97 (100)
T ss_dssp S
T ss_pred C
Confidence 4
No 85
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.47 E-value=1.3e-13 Score=115.28 Aligned_cols=76 Identities=21% Similarity=0.237 Sum_probs=71.3
Q ss_pred cccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCC-CcccccCCCCCCEEEEEEeeC
Q 012177 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQ-RLITDICKRNEAVIHLLVRKS 185 (469)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~-~tL~dy~I~~~svI~Lv~rks 185 (469)
...|+|+||+.+| ++.++|++++||.+||++|+++.|+| +++|+|+|+|+.|+|+ ++|++|+|+++++|+|+++..
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~ 89 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTP--IKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSI 89 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSC--TTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCC
T ss_pred CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcC--HHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCC
Confidence 4568999999888 89999999999999999999999988 9999999999999999 999999999999999998854
No 86
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.47 E-value=8.4e-14 Score=122.35 Aligned_cols=84 Identities=17% Similarity=0.244 Sum_probs=71.2
Q ss_pred eeeeccccceeeeeeecceeE-EEEeecCchHHHHHHHHH-----HhcCCCCCCCceEEEECCEEcCCCCcccccCCCCC
Q 012177 102 LVLRLSDLQAITVTTVCGKVF-EFHVERGRNVGYVKQQIA-----KKGREFVDLKNQELICDGEELEDQRLITDICKRNE 175 (469)
Q Consensus 102 LvlrLsd~m~I~Vkt~~Gk~~-~l~V~~~~TV~~LK~kI~-----~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~ 175 (469)
|.....+.|.|+|||.+|+.+ .+++++++||.+||++|+ .++++|.++++|||+|+|+.|+|+++|++|+|+.+
T Consensus 9 ~~~~~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~ 88 (126)
T 1se9_A 9 LEAEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVS 88 (126)
T ss_dssp -CCSSCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTT
T ss_pred hhhhhcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcC
Confidence 333345789999999999988 699999999999999995 45567733489999999999999999999999988
Q ss_pred ------CEEEEEEeeC
Q 012177 176 ------AVIHLLVRKS 185 (469)
Q Consensus 176 ------svI~Lv~rks 185 (469)
+++||++|..
T Consensus 89 ~~~~~v~tmhlVlrl~ 104 (126)
T 1se9_A 89 NLAGAVTTMHVIIQAP 104 (126)
T ss_dssp SCTTCCEEEEEEECCC
T ss_pred CccCCcEEEEEEeccC
Confidence 6899998743
No 87
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.47 E-value=4.6e-14 Score=117.69 Aligned_cols=79 Identities=20% Similarity=0.306 Sum_probs=72.8
Q ss_pred CCCCEEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 30 ~~~~M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
+...|+|+|...|+++.++|.+++||.+||.+|++++|+|+++|+|+|.|+.|. |+.+|++|+|+++++|||++++.++
T Consensus 14 ~~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 14 SSRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILR-DQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp CSCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECC-TTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred CCCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECC-CcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 367899999434999999999999999999999999999999999999999997 8999999999999999999988754
No 88
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.46 E-value=7.5e-14 Score=119.86 Aligned_cols=78 Identities=24% Similarity=0.281 Sum_probs=73.6
Q ss_pred CCCEEEEE-Ee---CCeEEEEEeCC-CCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeee
Q 012177 31 NDSILIFL-SV---GGSVIPMRVME-SDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (469)
Q Consensus 31 ~~~M~I~V-~l---~G~~~~l~V~~-sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (469)
...|+|+| +. +|++++++|.+ ++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|+|+++++|+|+++
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~-D~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLK-DNMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCC-TTSBTTTTTCSSSCEEEEECS
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECC-CCCcHHHCCCCCCCEEEEEEE
Confidence 56799999 66 78999999998 99999999999999999999999999999998 899999999999999999999
Q ss_pred cccc
Q 012177 106 LSDL 109 (469)
Q Consensus 106 Lsd~ 109 (469)
++++
T Consensus 104 ~~GG 107 (111)
T 1we6_A 104 ERSG 107 (111)
T ss_dssp SCCS
T ss_pred cCCC
Confidence 8876
No 89
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.46 E-value=1e-13 Score=120.56 Aligned_cols=72 Identities=15% Similarity=0.086 Sum_probs=67.0
Q ss_pred ceeeeeeecce-eEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCC-------CCCEEEEE
Q 012177 110 QAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKR-------NEAVIHLL 181 (469)
Q Consensus 110 m~I~Vkt~~Gk-~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~-------~~svI~Lv 181 (469)
|.++|++..++ ++.++|++++||.+||++|+.++|+| +++|||+|+|+.|+|+++|++|+|+ ++++|||+
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP--~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~ 78 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRP--PEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLA 78 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCC--HHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEE
Confidence 56777777775 58899999999999999999999998 9999999999999999999999999 79999999
Q ss_pred Ee
Q 012177 182 VR 183 (469)
Q Consensus 182 ~r 183 (469)
+|
T Consensus 79 lr 80 (118)
T 2fnj_B 79 FR 80 (118)
T ss_dssp EB
T ss_pred ec
Confidence 98
No 90
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=115.14 Aligned_cols=74 Identities=16% Similarity=0.187 Sum_probs=68.3
Q ss_pred cccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
...|+|+|++ |+++.++|++++||.+||++|+++.++| +++|+|+|+|+.|+|+++|++|+|+++++|+|++|.
T Consensus 17 ~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl 90 (93)
T 2l7r_A 17 RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIA--PEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRM 90 (93)
T ss_dssp ---CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCC--GGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCC
T ss_pred CCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcC--hhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 4569999998 8999999999999999999999999988 999999999999999999999999999999998874
No 91
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.45 E-value=3.1e-13 Score=114.32 Aligned_cols=77 Identities=19% Similarity=0.286 Sum_probs=71.4
Q ss_pred CCCEEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeeccc
Q 012177 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 31 ~~~M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (469)
...|+|+|+..|+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|||+++++|+|+++++.
T Consensus 23 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 23 PKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILK-DQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp CCCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEEC-TTCCTGGGTCCTTCEEEEEECCSS
T ss_pred CCeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECC-CcCcHHHcCCCCCCEEEEEEcCCC
Confidence 67899999444899999999999999999999999999999999999999998 899999999999999999987653
No 92
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.45 E-value=1.9e-13 Score=118.58 Aligned_cols=74 Identities=15% Similarity=0.086 Sum_probs=68.3
Q ss_pred ceeeeeeecce-eEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCC-------CCEEEEE
Q 012177 110 QAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRN-------EAVIHLL 181 (469)
Q Consensus 110 m~I~Vkt~~Gk-~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~-------~svI~Lv 181 (469)
|.++++...++ ++.+++++++||.+||++|+.++|+| +++|||+|+|+.|+|++||++|+|++ +++|||+
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giP--p~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lv 78 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRP--PDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLA 78 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCC--HHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEE
Confidence 56778777666 77899999999999999999999998 99999999999999999999999999 9999999
Q ss_pred EeeC
Q 012177 182 VRKS 185 (469)
Q Consensus 182 ~rks 185 (469)
+|..
T Consensus 79 lr~~ 82 (118)
T 4ajy_B 79 FRAD 82 (118)
T ss_dssp ECCS
T ss_pred EecC
Confidence 9953
No 93
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.45 E-value=4.9e-14 Score=120.35 Aligned_cols=79 Identities=20% Similarity=0.234 Sum_probs=71.8
Q ss_pred cceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCC---------------CceEEEECCEEcC-CCCcccccCC
Q 012177 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDL---------------KNQELICDGEELE-DQRLITDICK 172 (469)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~---------------e~QrLif~Gk~Le-D~~tL~dy~I 172 (469)
.|+|+|++++|+++.++|++++||.+||++|+++.+++ + ++|+|+|+|+.|. |.++|.+|+|
T Consensus 7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~--~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLK--QEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHH--HHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred cEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCC--cccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 49999999999999999999999999999999999876 4 4679999999996 6799999999
Q ss_pred CCCCEEEEEEeeCCccc
Q 012177 173 RNEAVIHLLVRKSAKVR 189 (469)
Q Consensus 173 ~~~svI~Lv~rks~kv~ 189 (469)
+++++|||+.+...+.+
T Consensus 85 ~~g~~l~lv~~lr~~~~ 101 (105)
T 1v2y_A 85 RNRDEVSFIKKLGQKSG 101 (105)
T ss_dssp CSSEEEEEEECSCSCCC
T ss_pred CCCCEEEEEehhccCCC
Confidence 99999999998766643
No 94
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.45 E-value=2.4e-13 Score=114.79 Aligned_cols=79 Identities=22% Similarity=0.325 Sum_probs=72.8
Q ss_pred ccccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012177 106 LSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (469)
Q Consensus 106 Lsd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks 185 (469)
.+..|+|+|++.+|+ +.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+++|++|+|+++++|+|+++..
T Consensus 19 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~ 95 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAH--PDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQ 95 (100)
T ss_dssp CTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCC
T ss_pred CCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcC--hhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCC
Confidence 356699999999887 7999999999999999999999988 9999999999999999999999999999999998865
Q ss_pred Cc
Q 012177 186 AK 187 (469)
Q Consensus 186 ~k 187 (469)
..
T Consensus 96 ~~ 97 (100)
T 1yqb_A 96 HR 97 (100)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 95
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.44 E-value=3e-13 Score=113.23 Aligned_cols=74 Identities=32% Similarity=0.447 Sum_probs=70.9
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks 185 (469)
|+|+|++.+|+++.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+.+|++|+|+++++|+|+.+..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~ 74 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--hhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 7899999999999999999999999999999999988 9999999999999999999999999999999998854
No 96
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.44 E-value=2.3e-13 Score=117.02 Aligned_cols=74 Identities=32% Similarity=0.442 Sum_probs=71.4
Q ss_pred cceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
.|+|+|++.+|+++.++|++++||.+||++|+++.++| +++|+|+|+|+.|+|.++|++|+|+++++|||++|.
T Consensus 35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl 108 (111)
T 3vdz_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECC
T ss_pred cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCC--hHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 58999999999999999999999999999999999988 999999999999999999999999999999999874
No 97
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.44 E-value=1.8e-13 Score=113.55 Aligned_cols=75 Identities=24% Similarity=0.359 Sum_probs=68.5
Q ss_pred ccceeeeeeecce--eEEEEeecCchHHHHHHHHHHhc--CCCCCCCceEEEECCEEcCCCCccccc--CCCCCCEEEEE
Q 012177 108 DLQAITVTTVCGK--VFEFHVERGRNVGYVKQQIAKKG--REFVDLKNQELICDGEELEDQRLITDI--CKRNEAVIHLL 181 (469)
Q Consensus 108 d~m~I~Vkt~~Gk--~~~l~V~~~~TV~~LK~kI~~~~--gip~~~e~QrLif~Gk~LeD~~tL~dy--~I~~~svI~Lv 181 (469)
..|+|+||+.+|+ ++.+++++++||.+||++|++++ +++ +++|+|+|+|+.|+|+++|++| +|+++++|||+
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~--~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv 83 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPR--PEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLV 83 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCC--TTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEE
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCC--hHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEE
Confidence 3589999999988 56677779999999999999998 887 9999999999999999999999 99999999998
Q ss_pred Eee
Q 012177 182 VRK 184 (469)
Q Consensus 182 ~rk 184 (469)
++.
T Consensus 84 ~~~ 86 (93)
T 1wgd_A 84 CNV 86 (93)
T ss_dssp CCC
T ss_pred eCC
Confidence 773
No 98
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.44 E-value=3.5e-13 Score=113.94 Aligned_cols=78 Identities=23% Similarity=0.321 Sum_probs=72.1
Q ss_pred ccccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012177 106 LSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (469)
Q Consensus 106 Lsd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks 185 (469)
-...|+|+|++. |+++.++|++++||.+||++|++..|++ +++|+|+|+|+.|+|+.+|.+|+|+++++|+|+.+.+
T Consensus 22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSH--TDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCC--GGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcC--hhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 345689999998 8999999999999999999999999988 9999999999999999999999999999999998755
Q ss_pred C
Q 012177 186 A 186 (469)
Q Consensus 186 ~ 186 (469)
.
T Consensus 99 ~ 99 (101)
T 2klc_A 99 N 99 (101)
T ss_dssp S
T ss_pred C
Confidence 4
No 99
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.43 E-value=1.4e-13 Score=121.03 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=70.4
Q ss_pred cccceeeeeeecceeEEEEeecCchHHHHHHHHHH------hcCCCCCCCceEEEECCEEcCCCCcccccCCCCCC--EE
Q 012177 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAK------KGREFVDLKNQELICDGEELEDQRLITDICKRNEA--VI 178 (469)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~------~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~s--vI 178 (469)
...|.|+|||++|++++++|++++||.+||++|++ ++++|.++++|+|+|+|+.|+|+++|++|+|+.++ +|
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tl 94 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 94 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 34588999999999999999999999999999999 67775458999999999999999999999998665 78
Q ss_pred EEEEeeC
Q 012177 179 HLLVRKS 185 (469)
Q Consensus 179 ~Lv~rks 185 (469)
||++|..
T Consensus 95 hlv~r~~ 101 (125)
T 2gow_A 95 HLVARET 101 (125)
T ss_dssp EEEECSC
T ss_pred EEEecCC
Confidence 9888743
No 100
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.43 E-value=8.1e-14 Score=117.88 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=65.1
Q ss_pred CEEEEE-EeC--CeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeeccc
Q 012177 33 SILIFL-SVG--GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 33 ~M~I~V-~l~--G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (469)
+++|++ .-. +++++++|.+++||.+||++|++++|+|+++|+|+|+|++|. |+.+|++|+|+++++| +++++++
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~-D~~TL~~y~I~~gsti-~vl~lrg 93 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQ-LGKTLEEQGVAHNVKA-MVLELKQ 93 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECC-TTSBHHHHTCCSSEEE-EEECCCC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECC-CCCcHHHcCCCCCCEE-EEEEECC
Confidence 466665 212 689999999999999999999999999999999999999998 8999999999999999 6666643
No 101
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.43 E-value=2.3e-13 Score=119.69 Aligned_cols=77 Identities=25% Similarity=0.294 Sum_probs=69.9
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHH------HhCCC--CcceEEEEcCeecccCCccccccCccCcc--c
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQS------YNGFF--VKKQKLVFEGRELARSNSRVRDYGLADGN--V 99 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~------~~Gip--~~~QrLvf~Gk~L~~D~~tL~dygI~~gs--t 99 (469)
...|+|+| +++|++++++|.+++||.+||++|++ ++|+| +++|||+|+|+.|. |+.+|++|+|+.++ +
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~Le-D~~TL~~y~I~~~~~~t 93 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLH-GNVTLGALKLPFGKTTV 93 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEE-SSCBTGGGCCCTTSEEE
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCC-CCCcHHHcCCCCCCceE
Confidence 56699999 78999999999999999999999999 78884 89999999999998 89999999999665 7
Q ss_pred eeeeeeccc
Q 012177 100 LHLVLRLSD 108 (469)
Q Consensus 100 l~LvlrLsd 108 (469)
+||++++..
T Consensus 94 lhlv~r~~~ 102 (125)
T 2gow_A 94 MHLVARETL 102 (125)
T ss_dssp EEEEECSCC
T ss_pred EEEEecCCC
Confidence 899998864
No 102
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.15 E-value=1.1e-14 Score=115.85 Aligned_cols=73 Identities=16% Similarity=0.239 Sum_probs=70.1
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
|+|+|++.+|+++.+++++++||.+||++|++..|+| +++|+|+|+|+.|+|+.+|++|+|+++++|||++|.
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rl 73 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVP--ADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRP 73 (76)
Confidence 7899999999999999999999999999999999988 999999999999999999999999999999998874
No 103
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.43 E-value=2.3e-13 Score=125.17 Aligned_cols=78 Identities=35% Similarity=0.604 Sum_probs=70.6
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
...|+|+| +.+|++++++|.+++||.+||.+|+.++|+|+++|+|+|+|++|. |+.+|.+|+|+++++|||+++++++
T Consensus 94 ~gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~-D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 94 RGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp CCCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECC-TTSBSGGGTCCTTCEEEECC-----
T ss_pred cccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCC-CCCcHHHhCCCCCCEEEEEEecCCC
Confidence 56799999 889999999999999999999999999999999999999999998 8999999999999999999998764
No 104
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.43 E-value=4.8e-13 Score=114.89 Aligned_cols=75 Identities=32% Similarity=0.419 Sum_probs=71.6
Q ss_pred ccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
..|+|+|++.+|+.+.++|+++.||.+||++|++..+++ +++|+|+|+|+.|+|+++|++|+|+++++|+|++|.
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl 108 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCC--TTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECC
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcC--cccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 469999999999999999999999999999999999988 999999999999999999999999999999999874
No 105
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.43 E-value=3.5e-13 Score=124.33 Aligned_cols=74 Identities=32% Similarity=0.456 Sum_probs=71.3
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks 185 (469)
|+|+||+.+|+++.++|++++||.+||++|+++.|+| +++|+|+|+|+.|+|+++|++|+|+++++|||++|..
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~ 74 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC--TTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcC--HHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEec
Confidence 7899999999999999999999999999999999988 9999999999999999999999999999999998844
No 106
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.43 E-value=4.7e-13 Score=114.10 Aligned_cols=74 Identities=19% Similarity=0.158 Sum_probs=66.7
Q ss_pred CCCEEEEE-EeC--CeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCc-cCccceeeeee
Q 012177 31 NDSILIFL-SVG--GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL-ADGNVLHLVLR 105 (469)
Q Consensus 31 ~~~M~I~V-~l~--G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI-~~gstl~Lvlr 105 (469)
+-.|+|+| +.. +.+++++|.+++||++||++|++++|+|+.+|||+|+|+.+. |+.+|.+||| ++|+++||++.
T Consensus 22 ~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~-D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 22 DIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLAR-DQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp CEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC-TTCBTGGGTCCSTTCEEEEEEC
T ss_pred cEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEcc-CcCcHHHcCCCCCCCEEEEEEE
Confidence 45678888 655 479999999999999999999999999999999999999776 8999999999 59999999874
No 107
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.42 E-value=2.7e-13 Score=114.61 Aligned_cols=73 Identities=10% Similarity=-0.012 Sum_probs=63.8
Q ss_pred eeeeeeec----ceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012177 111 AITVTTVC----GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (469)
Q Consensus 111 ~I~Vkt~~----Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks 185 (469)
.|.|+..+ ++++.++|++++||.+||++|++++|+| +++|+|+|+|+.|+|+++|++|+|+++++|+++.-+.
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip--~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~lrg 93 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQ--ENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELKQ 93 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCC--STTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCCC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcC--HHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEEECC
Confidence 34455555 7899999999999999999999999988 9999999999999999999999999999996554333
No 108
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.42 E-value=2.7e-13 Score=115.35 Aligned_cols=77 Identities=19% Similarity=0.272 Sum_probs=71.1
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
+..|+|+| ...|+ +.++|.+++||.+||.+|++++|+++++|+|+|+|+.|. |+.+|.+|+|+++++|||++++.++
T Consensus 15 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 15 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILK-DPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp SSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECC-TTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred CceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECC-CcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 56799999 56665 799999999999999999999999999999999999997 8999999999999999999988654
No 109
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.42 E-value=2.8e-13 Score=112.08 Aligned_cols=77 Identities=16% Similarity=0.331 Sum_probs=71.7
Q ss_pred CCCCEEEEEEeCCeEEEE-EeCCCCcHHHHHHHHHHHhCCCCcceEEE---EcCeecccCCccccccCccCccceeeeee
Q 012177 30 SNDSILIFLSVGGSVIPM-RVMESDSIASVKLRIQSYNGFFVKKQKLV---FEGRELARSNSRVRDYGLADGNVLHLVLR 105 (469)
Q Consensus 30 ~~~~M~I~V~l~G~~~~l-~V~~sdTV~~LK~kIq~~~Gip~~~QrLv---f~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (469)
..+.|+|+|...|+++++ +|.+++||.+||++|++++|+|+++|+|+ |.|+.|. |+.+|++|+|+++++|+|+..
T Consensus 4 ~~~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~-D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 4 GSSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAE-NDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CCCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECC-TTSBHHHHTCCTTEEEEEECC
T ss_pred CCceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcC-CCCCHHHcCCCCCCEEEEEec
Confidence 467899999778999999 99999999999999999999999999999 9999997 889999999999999999876
Q ss_pred cc
Q 012177 106 LS 107 (469)
Q Consensus 106 Ls 107 (469)
..
T Consensus 83 ~~ 84 (90)
T 1v5t_A 83 RE 84 (90)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 110
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.42 E-value=3.2e-13 Score=113.30 Aligned_cols=78 Identities=10% Similarity=0.166 Sum_probs=71.2
Q ss_pred CCCCCEEEEEEeCCeEE-EEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecc
Q 012177 29 LSNDSILIFLSVGGSVI-PMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (469)
Q Consensus 29 ~~~~~M~I~V~l~G~~~-~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (469)
+..+.|+|+|...|+++ .++|.+++||.+||.+|++++|+|+++|+|+|.|+.|. |+ +|.+|+|+++++|+|+....
T Consensus 3 ~~~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~-D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 3 SGSSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLK-DD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp SCCCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECC-SS-CCCSCCCCSSCEEECCCCCC
T ss_pred CCCcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCC-CC-CHHHCCCCCCCEEEEEecch
Confidence 34678999997789999 69999999999999999999999999999999999998 77 99999999999999987655
Q ss_pred c
Q 012177 108 D 108 (469)
Q Consensus 108 d 108 (469)
+
T Consensus 81 ~ 81 (96)
T 1wgg_A 81 A 81 (96)
T ss_dssp C
T ss_pred h
Confidence 3
No 111
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.41 E-value=1.7e-14 Score=127.18 Aligned_cols=75 Identities=36% Similarity=0.623 Sum_probs=0.0
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
|+|+| +++|++++++|.+++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|+|.++++|+|++++.++
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECC-CCCchhhhccCCCCEEEEEEEcCCC
Confidence 89999 889999999999999999999999999999999999999999998 8999999999999999999998876
No 112
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.41 E-value=8.8e-13 Score=107.99 Aligned_cols=75 Identities=25% Similarity=0.470 Sum_probs=69.5
Q ss_pred CCCCEEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeee
Q 012177 30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (469)
Q Consensus 30 ~~~~M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (469)
+..++.+.++++|+++.++|.+++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|+.+
T Consensus 9 ~~~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 9 SHSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLV-ETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp SCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECC-TTCBTTTTTCCTTEEEEEECC
T ss_pred cCCcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECC-CcCCHHHCCCCCCCEEEEEEe
Confidence 356777777999999999999999999999999999999999999999999997 899999999999999998764
No 113
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.41 E-value=6.9e-13 Score=112.86 Aligned_cols=78 Identities=22% Similarity=0.338 Sum_probs=71.6
Q ss_pred cccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012177 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (469)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks~ 186 (469)
...|+|+|++.+|+ +.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+++|.+|+|+++++|||+++...
T Consensus 15 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~ 91 (106)
T 1wx7_A 15 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAH--PDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 91 (106)
T ss_dssp SSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCC--TTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCC
T ss_pred CceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcC--hhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 34589999998886 7999999999999999999999988 99999999999999999999999999999999988554
Q ss_pred c
Q 012177 187 K 187 (469)
Q Consensus 187 k 187 (469)
.
T Consensus 92 ~ 92 (106)
T 1wx7_A 92 R 92 (106)
T ss_dssp C
T ss_pred C
Confidence 4
No 114
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.40 E-value=2.8e-13 Score=112.89 Aligned_cols=76 Identities=25% Similarity=0.321 Sum_probs=71.1
Q ss_pred ccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012177 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks~ 186 (469)
..|+|+|++. |+++.++|++++||.+||++|++..+++ +++|+|+|+|+.|+|+++|.+|+|+++++|||+++...
T Consensus 16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~ 91 (96)
T 1wx8_A 16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCN--ADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHS 91 (96)
T ss_dssp CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSC--TTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSS
T ss_pred CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCC--HHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCC
Confidence 4589999998 9999999999999999999999999988 99999999999999999999999999999999887543
No 115
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.40 E-value=8.8e-13 Score=109.13 Aligned_cols=78 Identities=15% Similarity=0.280 Sum_probs=70.1
Q ss_pred CCCCEEEEEEeCCeEEEEEeCCC-----CcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeee
Q 012177 30 SNDSILIFLSVGGSVIPMRVMES-----DSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (469)
Q Consensus 30 ~~~~M~I~V~l~G~~~~l~V~~s-----dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (469)
....|+|+|+..|+++.++|.++ +||.+||.+|++++|+|+++|+|+|.|+.|.+++.+|++|+|+++++|+|+.
T Consensus 4 ~~~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 4 GSSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp CCSSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred CCCeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 35689999966789999999995 9999999999999999999999999999998446789999999999999987
Q ss_pred ecc
Q 012177 105 RLS 107 (469)
Q Consensus 105 rLs 107 (469)
+..
T Consensus 84 ~~~ 86 (92)
T 1wxv_A 84 KKN 86 (92)
T ss_dssp CCS
T ss_pred cCC
Confidence 543
No 116
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.39 E-value=8.3e-13 Score=116.08 Aligned_cols=76 Identities=24% Similarity=0.319 Sum_probs=70.0
Q ss_pred ccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012177 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks~ 186 (469)
..|+|+|++. |+++.++|++++||.+||++|+++.+++ +++|+|+|+|+.|+|+++|.+|+|+++++|+|+.+...
T Consensus 31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~g 106 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQ--TDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDP 106 (125)
T ss_dssp CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSC--SSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC---
T ss_pred CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcC--cceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCC
Confidence 4689999998 9999999999999999999999999988 99999999999999999999999999999999988543
No 117
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.39 E-value=5.1e-13 Score=114.65 Aligned_cols=75 Identities=23% Similarity=0.261 Sum_probs=71.5
Q ss_pred cccceeeeeee---cceeEEEEeec-CchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 012177 107 SDLQAITVTTV---CGKVFEFHVER-GRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (469)
Q Consensus 107 sd~m~I~Vkt~---~Gk~~~l~V~~-~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~ 182 (469)
.+.|+|+|++. +|+.+.++|++ ++||.+||++|++..|+| +++|+|+|+|+.|+|+++|++|+|+++++|+|++
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip--~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~ 102 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIP--ANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSL 102 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCC--TTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEEC
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCC--HHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 46699999998 89999999998 999999999999999988 9999999999999999999999999999999998
Q ss_pred e
Q 012177 183 R 183 (469)
Q Consensus 183 r 183 (469)
+
T Consensus 103 r 103 (111)
T 1we6_A 103 R 103 (111)
T ss_dssp S
T ss_pred E
Confidence 7
No 118
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.39 E-value=3.3e-13 Score=114.08 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=65.7
Q ss_pred ccceeeeeeecce--eEEEEeecCchHHHHHHHHHHh-cCCCCCCCceEEEECCEEcCCCCccccc--CCCCCCEEEEE
Q 012177 108 DLQAITVTTVCGK--VFEFHVERGRNVGYVKQQIAKK-GREFVDLKNQELICDGEELEDQRLITDI--CKRNEAVIHLL 181 (469)
Q Consensus 108 d~m~I~Vkt~~Gk--~~~l~V~~~~TV~~LK~kI~~~-~gip~~~e~QrLif~Gk~LeD~~tL~dy--~I~~~svI~Lv 181 (469)
..|+|+||+.+|+ +++++|++++||.+||++|+++ .|++ |+++|||+|+|+.|+|+++|++| +|+++++|||+
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~p-p~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKP-LTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCC-CTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCC-ChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 4589999999998 6789999999999999999986 4655 36999999999999999999999 99999999984
No 119
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.39 E-value=8.3e-13 Score=109.91 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=69.2
Q ss_pred CCCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCC-ccccccCccCccceeeeeecc
Q 012177 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSN-SRVRDYGLADGNVLHLVLRLS 107 (469)
Q Consensus 30 ~~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~-~tL~dygI~~gstl~LvlrLs 107 (469)
+...|+|+| +..|+.+.++|.+++||.+||.+|+++. +++|+|+|.|+.|. |+ .+|++|+|+++++|||+++..
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~-D~~~tL~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 4 GSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQ-DPARTLSSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp CCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECC-CSSCBTTTTTCCTTEEEEEECCCC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEcc-CCcCCHHHcCCCCCCEEEEEECCC
Confidence 467899999 7889999999999999999999999997 89999999999998 67 999999999999999998764
Q ss_pred c
Q 012177 108 D 108 (469)
Q Consensus 108 d 108 (469)
.
T Consensus 80 ~ 80 (95)
T 1wia_A 80 G 80 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 120
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.39 E-value=6.5e-13 Score=110.54 Aligned_cols=76 Identities=17% Similarity=0.146 Sum_probs=69.7
Q ss_pred ccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCC-CcccccCCCCCCEEEEEEeeCC
Q 012177 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQ-RLITDICKRNEAVIHLLVRKSA 186 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~-~tL~dy~I~~~svI~Lv~rks~ 186 (469)
..|+|+|++.+|+.+.++|++++||.+||++|++.. +++|+|+|+|+.|+|+ ++|.+|+|+++++|||+++++.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~-----~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ-----ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST-----TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC-----cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 458999999999999999999999999999999886 5899999999999999 9999999999999999988655
Q ss_pred cc
Q 012177 187 KV 188 (469)
Q Consensus 187 kv 188 (469)
..
T Consensus 81 ~~ 82 (95)
T 1wia_A 81 AA 82 (95)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 121
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.39 E-value=3.2e-14 Score=129.21 Aligned_cols=75 Identities=36% Similarity=0.623 Sum_probs=0.0
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
|+|+| +++|++++++|++++||.+||.+|++++|+|+++|+|+|+|++|. |+.+|++|+|+++++|+|++++.++
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~dygI~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEcc-ccCcHHHcCCCCCCEEEEEeeccCC
Confidence 89999 889999999999999999999999999999999999999999998 8999999999999999999998865
No 122
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.38 E-value=1.1e-12 Score=113.46 Aligned_cols=78 Identities=29% Similarity=0.399 Sum_probs=73.4
Q ss_pred cccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012177 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (469)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks~ 186 (469)
.+..+|+|++.+|+++.++|++++||.+||++|++..++| +++|+|+|+|+.|+|+++|++|+|+++++|+|+++...
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~G 84 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRG 84 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCS
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcC--hHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCC
Confidence 3567899999999999999999999999999999999988 99999999999999999999999999999999988544
No 123
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.38 E-value=9.6e-13 Score=113.68 Aligned_cols=78 Identities=26% Similarity=0.422 Sum_probs=71.8
Q ss_pred CCCEEEEEEe-----------CCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccc
Q 012177 31 NDSILIFLSV-----------GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNV 99 (469)
Q Consensus 31 ~~~M~I~V~l-----------~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gst 99 (469)
+..|+|+|+. +|++++++|.+++||.+||.+|++++|+|+++|+|+|.|+.|. |+.+|++|+|.++++
T Consensus 23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~-D~~tL~~y~i~~g~~ 101 (115)
T 1we7_A 23 KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIK-DSNSLAYYNMASGAV 101 (115)
T ss_dssp CSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEEC-TTSBHHHHTCCSSCE
T ss_pred CCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECC-CCCCHHHCCCCCCCE
Confidence 4578888832 4789999999999999999999999999999999999999998 899999999999999
Q ss_pred eeeeeecccc
Q 012177 100 LHLVLRLSDL 109 (469)
Q Consensus 100 l~LvlrLsd~ 109 (469)
|||++++.++
T Consensus 102 i~lv~rl~GG 111 (115)
T 1we7_A 102 IHLALKERSG 111 (115)
T ss_dssp EEEEECCCSC
T ss_pred EEEEEEcCCC
Confidence 9999998876
No 124
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.38 E-value=3.5e-13 Score=113.89 Aligned_cols=73 Identities=16% Similarity=0.291 Sum_probs=63.7
Q ss_pred CCCCEEEEE-EeCCe--EEEEEeCCCCcHHHHHHHHHHH-hCCC-CcceEEEEcCeecccCCcccccc--CccCccceee
Q 012177 30 SNDSILIFL-SVGGS--VIPMRVMESDSIASVKLRIQSY-NGFF-VKKQKLVFEGRELARSNSRVRDY--GLADGNVLHL 102 (469)
Q Consensus 30 ~~~~M~I~V-~l~G~--~~~l~V~~sdTV~~LK~kIq~~-~Gip-~~~QrLvf~Gk~L~~D~~tL~dy--gI~~gstl~L 102 (469)
+...|+|+| +++|+ +++++|.+++||.+||++|+++ .|+| +++|||+|+|+.|. |+.+|++| +|+++++|||
T Consensus 20 ~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~-D~~tL~~y~~~I~~~~tihL 98 (99)
T 2kdb_A 20 QGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLP-DHLQLKDILRKQDEYHMVHL 98 (99)
T ss_dssp ---CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEEC-TTSBTHHHHTTTCSEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECC-CCCCHHHHhcCCCCCCEEEe
Confidence 367799999 67777 6899999999999999999986 5666 59999999999998 89999999 9999999998
Q ss_pred e
Q 012177 103 V 103 (469)
Q Consensus 103 v 103 (469)
+
T Consensus 99 v 99 (99)
T 2kdb_A 99 V 99 (99)
T ss_dssp C
T ss_pred C
Confidence 5
No 125
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.38 E-value=1.5e-12 Score=116.13 Aligned_cols=78 Identities=35% Similarity=0.604 Sum_probs=73.3
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
...|+|+| +.+|+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|+++++|+|+++++++
T Consensus 74 ~~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~-d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 74 RGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp TTCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred ccccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEecCCC
Confidence 45699999 789999999999999999999999999999999999999999998 8999999999999999999998764
No 126
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.37 E-value=8.7e-13 Score=111.61 Aligned_cols=78 Identities=13% Similarity=0.110 Sum_probs=70.2
Q ss_pred ccceeeeeeecc----eeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCC-CcccccCCCCCCEEEEEE
Q 012177 108 DLQAITVTTVCG----KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQ-RLITDICKRNEAVIHLLV 182 (469)
Q Consensus 108 d~m~I~Vkt~~G----k~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~-~tL~dy~I~~~svI~Lv~ 182 (469)
..|+|+|++.++ +++.++|++++||.+||++|+++.+++ +++|+|+|+|+.|+|+ ++|.+|+|+++++|+|+.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~ 83 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVP--AEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQ 83 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCC--GGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECB
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcC--hHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEE
Confidence 458899998754 799999999999999999999999988 9999999999999987 799999999999999987
Q ss_pred eeCCc
Q 012177 183 RKSAK 187 (469)
Q Consensus 183 rks~k 187 (469)
+....
T Consensus 84 ~~~gg 88 (102)
T 1v5o_A 84 KDNVG 88 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 75443
No 127
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=9.2e-13 Score=111.52 Aligned_cols=74 Identities=14% Similarity=0.141 Sum_probs=67.4
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEE--cCeecccCCccccccCccCccceeeeeec
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF--EGRELARSNSRVRDYGLADGNVLHLVLRL 106 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf--~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (469)
...|++++ +.+|++++++|++++||.+||++|++++|||+++|+|+| .|+ |. |+.+|++|+|+.|++|||++..
T Consensus 6 ~~~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~-D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 6 SGRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VE-DSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp CCCEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CC-TTSBHHHHCCCSEEEEEECCSS
T ss_pred CcceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CC-CcCCHHHcCCCCCCEEEEEecC
Confidence 34688888 899999999999999999999999999999999999986 566 87 8999999999999999998764
No 128
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.36 E-value=2.1e-12 Score=110.11 Aligned_cols=73 Identities=12% Similarity=-0.039 Sum_probs=67.8
Q ss_pred ceeeeeeecc--eeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCC-CCCCEEEEEEee
Q 012177 110 QAITVTTVCG--KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICK-RNEAVIHLLVRK 184 (469)
Q Consensus 110 m~I~Vkt~~G--k~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I-~~~svI~Lv~rk 184 (469)
|+|+|++..+ .+++++|++++||.+||++|++++|+| +++|||+|+|+.++|+++|.+|+| ++|+++||++-.
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gip--p~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFP--PVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCC--HHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 7888998774 789999999999999999999999998 999999999999999999999999 699999998753
No 129
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.36 E-value=8e-13 Score=124.04 Aligned_cols=75 Identities=32% Similarity=0.422 Sum_probs=71.7
Q ss_pred cceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012177 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (469)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks 185 (469)
.|+|+||+.+|+++.++|++++||.+||++|++++++| +++|+|+|+|+.|+|+.+|++|+|+++++|||+++..
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp--~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlrlr 179 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 179 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCC--HHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcC
Confidence 39999999999999999999999999999999999988 9999999999999999999999999999999998743
No 130
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.35 E-value=4.2e-13 Score=113.60 Aligned_cols=73 Identities=27% Similarity=0.447 Sum_probs=65.8
Q ss_pred CCEEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeee
Q 012177 32 DSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (469)
Q Consensus 32 ~~M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (469)
-.|+|+|..+|+++.++|.+++||.+||++|++++|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+.+
T Consensus 27 m~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 27 MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILK-DDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp --CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECC-TTSBTTTTTCCTTEEEEECCC
T ss_pred cEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECC-CcCcHHHCCCCCCCEEEEEeC
Confidence 3455666448999999999999999999999999999999999999999998 899999999999999999865
No 131
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.35 E-value=2.7e-12 Score=105.08 Aligned_cols=72 Identities=18% Similarity=0.185 Sum_probs=66.8
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~r 183 (469)
..+++++.+|+++.+++++++||.+||++|++..++| +++|+|+|+|+.|+|+.+|++|+|+++++|+|+..
T Consensus 12 ~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 12 TIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVL--PRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp CEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCC--TTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred cEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcC--hHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 3456777899999999999999999999999999988 99999999999999999999999999999999764
No 132
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.35 E-value=2e-12 Score=110.41 Aligned_cols=77 Identities=18% Similarity=0.161 Sum_probs=69.5
Q ss_pred ccceeeeeeecc---eeEEEEe--------ec-CchHHHHHHHHHHhc--CCCCCCCc-eEEEECCEEcCCCCcccccCC
Q 012177 108 DLQAITVTTVCG---KVFEFHV--------ER-GRNVGYVKQQIAKKG--REFVDLKN-QELICDGEELEDQRLITDICK 172 (469)
Q Consensus 108 d~m~I~Vkt~~G---k~~~l~V--------~~-~~TV~~LK~kI~~~~--gip~~~e~-QrLif~Gk~LeD~~tL~dy~I 172 (469)
..|+|+||+.++ +++.+++ ++ ++||.+||++|++.. +++ +++ |+|+|+|+.|+|+++|.+|+|
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip--~~~~qrLi~~Gk~L~D~~tL~~y~i 88 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVP--DPELIDLIYCGRKLKDDQTLDFYGI 88 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCC--CSSSEEEEETTEECCTTCBHHHHTC
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCC--hhhcEEEEECCeECCCCCcHHHcCC
Confidence 358899999998 8899994 44 499999999999999 988 899 999999999999999999999
Q ss_pred CCCCEEEEEEeeCC
Q 012177 173 RNEAVIHLLVRKSA 186 (469)
Q Consensus 173 ~~~svI~Lv~rks~ 186 (469)
+++++|||+.+...
T Consensus 89 ~~g~~i~lv~~~~~ 102 (107)
T 1x1m_A 89 QPGSTVHVLRKSWS 102 (107)
T ss_dssp CTTCEEEEEESSCC
T ss_pred CCCCEEEEEeCCCC
Confidence 99999999887554
No 133
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.34 E-value=1.6e-12 Score=108.71 Aligned_cols=75 Identities=15% Similarity=0.197 Sum_probs=69.0
Q ss_pred CCCCEEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeec
Q 012177 30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (469)
Q Consensus 30 ~~~~M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (469)
....|+|+|+..++++.++|.+++||.+||++|++++|+|+++|+|+|.|+.|. |. +|.+|+|+++++|+|+.+.
T Consensus 14 ~~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~-tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 14 GKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DK-TLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp CCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SS-BHHHHCCCTTEEEEECCSS
T ss_pred CCceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cC-cHHHCCCCCCCEEEEEecc
Confidence 467899999888999999999999999999999999999999999999999994 55 9999999999999997653
No 134
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.33 E-value=5.3e-12 Score=105.82 Aligned_cols=75 Identities=17% Similarity=0.239 Sum_probs=65.3
Q ss_pred CCCCCEEEEEEe-C--CeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEc--Ce---ecccCCccccccCccCccce
Q 012177 29 LSNDSILIFLSV-G--GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE--GR---ELARSNSRVRDYGLADGNVL 100 (469)
Q Consensus 29 ~~~~~M~I~V~l-~--G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~--Gk---~L~~D~~tL~dygI~~gstl 100 (469)
-+...+.|+|+. . ++.++++|.+++||++||++|+.++|+|+.+|||+|. |+ +|.+|+.+|++|+|++|++|
T Consensus 11 ~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gsti 90 (95)
T 2kjr_A 11 GKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRL 90 (95)
T ss_dssp CCCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEE
T ss_pred CCCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEE
Confidence 347788999943 3 3589999999999999999999999999999999997 45 56458999999999999999
Q ss_pred eee
Q 012177 101 HLV 103 (469)
Q Consensus 101 ~Lv 103 (469)
+|+
T Consensus 91 hlv 93 (95)
T 2kjr_A 91 HVV 93 (95)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
No 135
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.33 E-value=3.9e-12 Score=109.86 Aligned_cols=66 Identities=21% Similarity=0.251 Sum_probs=62.8
Q ss_pred ecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 117 ~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
++|+++.++|++++||.+||++|++..|++ +++|+|+|+|+.|+|+++|++|+|+++++|||++|.
T Consensus 43 L~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~rl 108 (115)
T 1we7_A 43 LNGQGLVFTLPLTDQVSVIKVKIHEATGMP--AGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALKE 108 (115)
T ss_dssp CSSEEEEEEECSCSBTHHHHHHHHHHSSCC--TTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEECC
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHCCC--hHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEc
Confidence 368899999999999999999999999988 999999999999999999999999999999999873
No 136
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.33 E-value=1.1e-13 Score=121.80 Aligned_cols=74 Identities=32% Similarity=0.456 Sum_probs=0.0
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks 185 (469)
|+|+|++.+|+++.++|++++||.+||++|++..++| +++|+|+|+|+.|+|+.+|++|+|+++++|+|+++..
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~ 74 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (128)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcC--hHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcC
Confidence 7899999999999999999999999999999999988 9999999999999999999999999999999998843
No 137
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.32 E-value=3.5e-12 Score=106.94 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=67.9
Q ss_pred ccceeeeeeecceeE-EEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012177 108 DLQAITVTTVCGKVF-EFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~-~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks 185 (469)
+.|+|+|+. .|+++ .++|++++||.+||++|+++.|++ +++|+|+|+|+.|+|. +|++|+|+++++|+|+....
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip--~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQ--PARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCC--TTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 358899994 78999 599999999999999999999988 9999999999999999 99999999999999976654
No 138
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.30 E-value=4.6e-12 Score=104.73 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=69.4
Q ss_pred ccceeeeeeecceeEEE-EeecCchHHHHHHHHHHhcCCCCCCCceEEE---ECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012177 108 DLQAITVTTVCGKVFEF-HVERGRNVGYVKQQIAKKGREFVDLKNQELI---CDGEELEDQRLITDICKRNEAVIHLLVR 183 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l-~V~~~~TV~~LK~kI~~~~gip~~~e~QrLi---f~Gk~LeD~~tL~dy~I~~~svI~Lv~r 183 (469)
..|+|+|+. .|+++.+ +|++++||.+||++|+++.|+| +++|+|+ |+|+.|+|+.+|++|+|+++++|+|+..
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip--~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVL--PERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCC--TTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcC--HHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 358899996 7899999 9999999999999999999998 9999999 9999999999999999999999999765
Q ss_pred eC
Q 012177 184 KS 185 (469)
Q Consensus 184 ks 185 (469)
..
T Consensus 83 ~~ 84 (90)
T 1v5t_A 83 RE 84 (90)
T ss_dssp CS
T ss_pred Cc
Confidence 44
No 139
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.29 E-value=6.7e-12 Score=105.61 Aligned_cols=75 Identities=19% Similarity=0.221 Sum_probs=65.3
Q ss_pred CCCCCEEEEEEeC---CeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCe---e---cccCCccccccCccCccc
Q 012177 29 LSNDSILIFLSVG---GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGR---E---LARSNSRVRDYGLADGNV 99 (469)
Q Consensus 29 ~~~~~M~I~V~l~---G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk---~---L~~D~~tL~dygI~~gst 99 (469)
.....+.|+|+.+ +..++++|.+++||++||++|+.++|+|+.+|||+|.|+ . |.+|+.+|.+|+|++|++
T Consensus 10 ~~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~ 89 (97)
T 2kj6_A 10 HGDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFR 89 (97)
T ss_dssp CCCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCE
T ss_pred CCCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCE
Confidence 3578899999542 347999999999999999999999999999999999884 3 544899999999999999
Q ss_pred eeee
Q 012177 100 LHLV 103 (469)
Q Consensus 100 l~Lv 103 (469)
|||+
T Consensus 90 Ihlv 93 (97)
T 2kj6_A 90 LHII 93 (97)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
No 140
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.29 E-value=2.5e-13 Score=123.31 Aligned_cols=72 Identities=33% Similarity=0.479 Sum_probs=0.0
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~r 183 (469)
|+|+|++.+|+++.++|++++||.+||++|++.+++| +++|+|+|+|+.|+|+.+|++|+|+++++|+|++|
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlr 72 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCC--HHHEEEEECCEEccccCcHHHcCCCCCCEEEEEee
Confidence 7899999999999999999999999999999999988 99999999999999999999999999999999977
No 141
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.29 E-value=4e-12 Score=108.50 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=68.4
Q ss_pred CCCEEEEE-EeCC---eEEEEEe--------CC-CCcHHHHHHHHHHHh--CCCCcc-eEEEEcCeecccCCccccccCc
Q 012177 31 NDSILIFL-SVGG---SVIPMRV--------ME-SDSIASVKLRIQSYN--GFFVKK-QKLVFEGRELARSNSRVRDYGL 94 (469)
Q Consensus 31 ~~~M~I~V-~l~G---~~~~l~V--------~~-sdTV~~LK~kIq~~~--Gip~~~-QrLvf~Gk~L~~D~~tL~dygI 94 (469)
...|+|+| ..++ ++++++| .+ ++||.+||++|++++ |+|+++ |+|+|.|+.|. |+.+|++|+|
T Consensus 10 ~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~-D~~tL~~y~i 88 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLK-DDQTLDFYGI 88 (107)
T ss_dssp CCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECC-TTCBHHHHTC
T ss_pred CCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECC-CCCcHHHcCC
Confidence 55699999 6677 7999994 44 499999999999999 999999 99999999997 8999999999
Q ss_pred cCccceeeeeecc
Q 012177 95 ADGNVLHLVLRLS 107 (469)
Q Consensus 95 ~~gstl~LvlrLs 107 (469)
+++++|||+++..
T Consensus 89 ~~g~~i~lv~~~~ 101 (107)
T 1x1m_A 89 QPGSTVHVLRKSW 101 (107)
T ss_dssp CTTCEEEEEESSC
T ss_pred CCCCEEEEEeCCC
Confidence 9999999998764
No 142
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.28 E-value=3.2e-13 Score=126.40 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=0.4
Q ss_pred EEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeeccccc
Q 012177 34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ 110 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~m 110 (469)
|+|+| +++|++++|+|++++||.+||.+|++++|+|+++|+|+|+|++|+ |+.+|+ ++++|||++++.++.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~Le-D~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAP-NTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp -----------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECC-CCCccc-----CCCEEEEEEecCCCc
Confidence 89999 899999999999999999999999999999999999999999998 888998 899999999998774
No 143
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.28 E-value=5.3e-12 Score=103.90 Aligned_cols=71 Identities=18% Similarity=0.138 Sum_probs=62.6
Q ss_pred EEEEEE---eCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEE-------cCeecccCCccccccCccCccceeee
Q 012177 34 ILIFLS---VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF-------EGRELARSNSRVRDYGLADGNVLHLV 103 (469)
Q Consensus 34 M~I~V~---l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf-------~Gk~L~~D~~tL~dygI~~gstl~Lv 103 (469)
++|.|+ ...+.+.+++++++||.+||++|+.++|+|+.+|||+| .|+.|. |+.+|++|+|++|++|||+
T Consensus 3 V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~-d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMA-NDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCC-TTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcC-CCCCHHHCCCCCCCEEEEE
Confidence 566664 34577899999999999999999999999999999996 588887 8999999999999999997
Q ss_pred ee
Q 012177 104 LR 105 (469)
Q Consensus 104 lr 105 (469)
-+
T Consensus 82 d~ 83 (86)
T 4b6w_A 82 DL 83 (86)
T ss_dssp EC
T ss_pred eC
Confidence 53
No 144
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.27 E-value=9.3e-12 Score=102.90 Aligned_cols=76 Identities=18% Similarity=0.216 Sum_probs=68.4
Q ss_pred ccceeeeeeecceeEEEEeecC-----chHHHHHHHHHHhcCCCCCCCceEEEECCEEcCC-CCcccccCCCCCCEEEEE
Q 012177 108 DLQAITVTTVCGKVFEFHVERG-----RNVGYVKQQIAKKGREFVDLKNQELICDGEELED-QRLITDICKRNEAVIHLL 181 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~~-----~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD-~~tL~dy~I~~~svI~Lv 181 (469)
..|+|+|++ .|+.+.++++++ .||.+||++|++..|+| +++|+|+|+|+.|+| ..+|.+|+|+++++|+|+
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip--~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~ 82 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVP--QSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI 82 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCC--TTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEE
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcC--HHHEEEEECCeecCCCcccHHHCCCCCCCEEEEE
Confidence 458899998 588899999995 99999999999999988 999999999999998 668999999999999998
Q ss_pred EeeCC
Q 012177 182 VRKSA 186 (469)
Q Consensus 182 ~rks~ 186 (469)
.++..
T Consensus 83 ~~~~~ 87 (92)
T 1wxv_A 83 GKKNS 87 (92)
T ss_dssp SCCSC
T ss_pred ecCCC
Confidence 76543
No 145
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=6.9e-12 Score=103.60 Aligned_cols=71 Identities=13% Similarity=0.180 Sum_probs=63.5
Q ss_pred CCCEEEEE-EeCCeEE--EE-EeCCCCcHHHHHHHHHHH-hCCCCcceEEEEc--CeecccCCccccccCccCccceee
Q 012177 31 NDSILIFL-SVGGSVI--PM-RVMESDSIASVKLRIQSY-NGFFVKKQKLVFE--GRELARSNSRVRDYGLADGNVLHL 102 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~--~l-~V~~sdTV~~LK~kIq~~-~Gip~~~QrLvf~--Gk~L~~D~~tL~dygI~~gstl~L 102 (469)
...|+|+| ++.|+.+ ++ +|.+++||.+||++|+++ .|+++++|+|+|. |+.|. |+.+|++|+|.++++|++
T Consensus 8 ~~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~-D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 8 MKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLK-DEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CCCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCC-TTCBTTTSSCCSEEEEEE
T ss_pred eEEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcC-CCCCHHHcCCCCCCEEEE
Confidence 44599999 8877664 68 999999999999999994 8999999999987 99997 899999999999999875
No 146
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.4e-11 Score=106.48 Aligned_cols=86 Identities=10% Similarity=0.127 Sum_probs=73.8
Q ss_pred CCCCEEEEEE--eCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecc
Q 012177 30 SNDSILIFLS--VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (469)
Q Consensus 30 ~~~~M~I~V~--l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (469)
....|.|.|. ..++.+++++.++.||.+||++++.+.++|+++|+|+|+|+.|. |+.+|.+|||++|.++||+.+-.
T Consensus 12 ~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLK-D~eTL~~~gIk~g~TIhLvi~s~ 90 (118)
T 2daf_A 12 EDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILK-NNETLVQHGVKPQEIVQVEIFST 90 (118)
T ss_dssp CSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEEC-SSCCHHHHSCCSSCEEEEEEEES
T ss_pred cCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcC-CcchHHHcCCCCCCEEEEEEecC
Confidence 3556777763 35789999999999999999999999999999999999999998 89999999999999999999876
Q ss_pred ccceeeeee
Q 012177 108 DLQAITVTT 116 (469)
Q Consensus 108 d~m~I~Vkt 116 (469)
+.-.-=||.
T Consensus 91 ~p~~~p~~~ 99 (118)
T 2daf_A 91 NPDLYPVRR 99 (118)
T ss_dssp CTTTSCCCC
T ss_pred CCccCccee
Confidence 554333343
No 147
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.25 E-value=1.1e-11 Score=124.23 Aligned_cols=76 Identities=37% Similarity=0.648 Sum_probs=70.3
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecc
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (469)
...|+|+| +++|+++.++|.+++||.+||++|++++|+|+++|+|+|+|++|. |+.+|++|+|+++++|+|++|++
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~-D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBTGGGTCCTTCEEEEEC---
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecC-CCCCHHHcCCCCCCEEEEEEeCC
Confidence 67899999 678999999999999999999999999999999999999999998 89999999999999999998863
No 148
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=1.1e-11 Score=104.92 Aligned_cols=75 Identities=13% Similarity=0.110 Sum_probs=68.2
Q ss_pred cceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEE--CCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012177 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC--DGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (469)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif--~Gk~LeD~~tL~dy~I~~~svI~Lv~rks~ 186 (469)
.|.+++++..|++++++|++++||++||++|++++|+| +++|+|++ .|+ |+|+++|++|+|+++++|||++....
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIp--p~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~~ 84 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIP--VSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDLP 84 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCC--TTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSSC
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCC--hhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCCC
Confidence 47788888999999999999999999999999999998 99999996 666 99999999999999999999876444
No 149
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.23 E-value=1.1e-11 Score=101.92 Aligned_cols=67 Identities=13% Similarity=0.072 Sum_probs=60.8
Q ss_pred ecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEE-------CCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012177 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC-------DGEELEDQRLITDICKRNEAVIHLLVRKS 185 (469)
Q Consensus 117 ~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif-------~Gk~LeD~~tL~dy~I~~~svI~Lv~rks 185 (469)
...+.+...+++++||++||++|+.++|+| +++|+|+| .|+.|+|+++|++|+|++|++|||+.+.+
T Consensus 12 ~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip--~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~P 85 (86)
T 4b6w_A 12 SRMRVPEKRYGLAQTIESIKENVFTHFATP--PEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQP 85 (86)
T ss_dssp CSCCEEEEEEETTSBHHHHHHHHHTTSCCC--GGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CCCeEEEEEcCccCcHHHHHHHHHHHHCCC--HHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCCC
Confidence 345667899999999999999999999998 99999997 48889999999999999999999987654
No 150
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.21 E-value=3.3e-11 Score=101.00 Aligned_cols=73 Identities=11% Similarity=0.176 Sum_probs=63.8
Q ss_pred cccceeeeeeecc--eeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEEC--CE---Ec-CCCCcccccCCCCCCEE
Q 012177 107 SDLQAITVTTVCG--KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD--GE---EL-EDQRLITDICKRNEAVI 178 (469)
Q Consensus 107 sd~m~I~Vkt~~G--k~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~--Gk---~L-eD~~tL~dy~I~~~svI 178 (469)
.+.+.|+|+...+ +.+++++++++||++||++|+.++|+| +++|+|+|. |+ .| +|+++|++|+|+++++|
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP--~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gsti 90 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGC--AGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRL 90 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSC--TTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcC--HHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEE
Confidence 3456777776554 588999999999999999999999998 999999997 55 55 89999999999999999
Q ss_pred EEE
Q 012177 179 HLL 181 (469)
Q Consensus 179 ~Lv 181 (469)
+|+
T Consensus 91 hlv 93 (95)
T 2kjr_A 91 HVV 93 (95)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 151
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=3.2e-11 Score=104.19 Aligned_cols=73 Identities=8% Similarity=0.125 Sum_probs=66.7
Q ss_pred ceeeee-eecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 110 QAITVT-TVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 110 m~I~Vk-t~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
+.|.|+ +..++.+.+.++++.||.+||++++...++| +++|+|+|+|+.|.|+.||.+|+|+++.+|||+.+.
T Consensus 16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP--~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIP--HSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCC--TTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEE
T ss_pred EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCC--hHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEec
Confidence 455555 4568899999999999999999999999988 999999999999999999999999999999998774
No 152
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=1.1e-11 Score=102.45 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=63.9
Q ss_pred cceeeeeeecceeE--EE-EeecCchHHHHHHHHHHh-cCCCCCCCceEEEEC--CEEcCCCCcccccCCCCCCEEEE
Q 012177 109 LQAITVTTVCGKVF--EF-HVERGRNVGYVKQQIAKK-GREFVDLKNQELICD--GEELEDQRLITDICKRNEAVIHL 180 (469)
Q Consensus 109 ~m~I~Vkt~~Gk~~--~l-~V~~~~TV~~LK~kI~~~-~gip~~~e~QrLif~--Gk~LeD~~tL~dy~I~~~svI~L 180 (469)
.|.|+|++..|+++ .+ +|++++||.+||++|++. .+++ +++|+|+|. |+.|+|+++|++|+|+++++|++
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~--~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWY--PARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSC--TTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCC--hHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 38999999998875 48 999999999999999995 7887 999999976 99999999999999999999886
No 153
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.19 E-value=4.4e-11 Score=119.89 Aligned_cols=76 Identities=32% Similarity=0.455 Sum_probs=72.1
Q ss_pred ccccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012177 106 LSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (469)
Q Consensus 106 Lsd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~r 183 (469)
.++.|+|+||+.+|+++.++|++++||.+||++|+++.+++ +++|+|+|+|+.|+|+++|++|+|+++++|+|++|
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp--~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlR 305 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 305 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC-
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--hHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence 46779999999999999999999999999999999999988 99999999999999999999999999999999876
No 154
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.18 E-value=2.1e-11 Score=104.13 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=66.6
Q ss_pred CCCCEEEEE-EeCCeEEEEEeC-CCCcHHHHHHHHHHHhCCCCcceEEEEcCe-----------ec---ccCCccccccC
Q 012177 30 SNDSILIFL-SVGGSVIPMRVM-ESDSIASVKLRIQSYNGFFVKKQKLVFEGR-----------EL---ARSNSRVRDYG 93 (469)
Q Consensus 30 ~~~~M~I~V-~l~G~~~~l~V~-~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk-----------~L---~~D~~tL~dyg 93 (469)
..+.|+|+| +.+|+. .++|+ +++||.+||++|++++|+|+.+|+|+|.|+ +| .+|+.+|++||
T Consensus 4 ~~~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~g 82 (107)
T 1wf9_A 4 GSSGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLN 82 (107)
T ss_dssp SCCCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTC
T ss_pred CCCeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCC
Confidence 355699999 778866 79999 999999999999999999999999999988 44 34899999999
Q ss_pred ccCccceeeeee
Q 012177 94 LADGNVLHLVLR 105 (469)
Q Consensus 94 I~~gstl~Lvlr 105 (469)
|++|++|||...
T Consensus 83 i~~G~~L~l~~~ 94 (107)
T 1wf9_A 83 LAHGSMVYLAYE 94 (107)
T ss_dssp CCTTCEEECCCS
T ss_pred CCCCCEEEEEeC
Confidence 999999998765
No 155
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.18 E-value=5.3e-11 Score=99.26 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=62.5
Q ss_pred CEEEEEEeCCe--EEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcC---ee---cccCCccccccCccCccceeeee
Q 012177 33 SILIFLSVGGS--VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG---RE---LARSNSRVRDYGLADGNVLHLVL 104 (469)
Q Consensus 33 ~M~I~V~l~G~--~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~G---k~---L~~D~~tL~dygI~~gstl~Lvl 104 (469)
.|.|+|+..+. .++++|.+++||.+||.+|+.++|+|+++|||+|.| +. |.+|+.+|.+|+|+++++|||+-
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 47788854544 799999999999999999999999999999999986 43 43489999999999999999864
No 156
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.18 E-value=2.2e-11 Score=125.09 Aligned_cols=79 Identities=23% Similarity=0.468 Sum_probs=69.7
Q ss_pred CCCCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHH---HhCCCCcceEEEEcCeecccCCccccccCccCccce-eee
Q 012177 29 LSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQS---YNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVL-HLV 103 (469)
Q Consensus 29 ~~~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~---~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl-~Lv 103 (469)
.....|+|+| ++.|++++++|.+++||.+||.+|+. ++|+++++|||+|.|+.|. |+.+|.+|+|+++++| +|+
T Consensus 3 ~~~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~-D~~tL~dygI~~gstIv~lv 81 (368)
T 1oqy_A 3 LGSSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILS-DDVPIRDYRIDEKNFVVVMV 81 (368)
T ss_dssp ---CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEEC-SSSBTTTTCCCTTSCEEEEE
T ss_pred CCCceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecC-CcCCHHHcCCCCCCEEEEEE
Confidence 3467899999 78899999999999999999999999 6789999999999999998 8999999999999998 666
Q ss_pred eeccc
Q 012177 104 LRLSD 108 (469)
Q Consensus 104 lrLsd 108 (469)
.+..+
T Consensus 82 ~k~~~ 86 (368)
T 1oqy_A 82 TKTKA 86 (368)
T ss_dssp ECCCS
T ss_pred ecCCC
Confidence 66543
No 157
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.17 E-value=1.4e-11 Score=102.89 Aligned_cols=72 Identities=17% Similarity=0.104 Sum_probs=65.3
Q ss_pred cceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
.|+|+|+ ..|+++.++++++.||.+||++|++..++| +++|+|+|+|+.|+| .+|.+|+|+++++|+|+.++
T Consensus 17 ~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip--~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 17 LVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLP--PAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp CEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSC--STTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCSS
T ss_pred eEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEecc
Confidence 4778888 578999999999999999999999999988 999999999999955 59999999999999997654
No 158
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.17 E-value=2.6e-12 Score=120.27 Aligned_cols=67 Identities=21% Similarity=0.265 Sum_probs=0.0
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~r 183 (469)
|+|+|+|++|++++++|++++||.+||++|+..+|+| +++|+|+|+|++|+|+++|+ ++++|||++|
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP--~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlR 67 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFE--IDMMTLVNNGFIAPNTELVT-----DDVTYYLSLK 67 (189)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcC--hhHEEEEecCeECCCCCccc-----CCCEEEEEEe
Confidence 7899999999999999999999999999999999998 99999999999999999998 8899999987
No 159
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.14 E-value=5.2e-11 Score=122.28 Aligned_cols=74 Identities=22% Similarity=0.311 Sum_probs=67.9
Q ss_pred ccceeeeeeecceeEEEEeecCchHHHHHHHHHH---hcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEE-EEEEe
Q 012177 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAK---KGREFVDLKNQELICDGEELEDQRLITDICKRNEAVI-HLLVR 183 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~---~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI-~Lv~r 183 (469)
..|+|+||+.+|+++.++|++++||.+||++|+. +.+++ +++|+|+|+|+.|+|+++|.+|+|+++++| +|+.+
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip--~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k 83 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 83 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCC--STEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEEC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCC--hhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEec
Confidence 3589999999999999999999999999999999 56787 999999999999999999999999999999 55544
No 160
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.14 E-value=9.1e-11 Score=98.10 Aligned_cols=79 Identities=13% Similarity=0.288 Sum_probs=73.7
Q ss_pred CCCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeeccc
Q 012177 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 30 ~~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (469)
..+.|+|+| +.+|+.+.+.|.+++++..|+.+++++.|+++.+|||+|+|++|. ++.|+++|++.++++|++++++.+
T Consensus 4 ~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~-~~~Tp~dl~medgD~Idv~~~~~G 82 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQQQTG 82 (94)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTTTTCCTTCEEEEEECCEE
T ss_pred CCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEEeccC
Confidence 367799999 778999999999999999999999999999999999999999998 899999999999999999999877
Q ss_pred c
Q 012177 109 L 109 (469)
Q Consensus 109 ~ 109 (469)
+
T Consensus 83 G 83 (94)
T 2io1_B 83 G 83 (94)
T ss_dssp S
T ss_pred C
Confidence 6
No 161
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.12 E-value=9.5e-11 Score=98.57 Aligned_cols=72 Identities=14% Similarity=0.087 Sum_probs=61.6
Q ss_pred ceeeeeeec--ceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCE---E----cCCCCcccccCCCCCCEEEE
Q 012177 110 QAITVTTVC--GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGE---E----LEDQRLITDICKRNEAVIHL 180 (469)
Q Consensus 110 m~I~Vkt~~--Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk---~----LeD~~tL~dy~I~~~svI~L 180 (469)
+.+.|+... ++.+++++++++||++||++|+.++|+| +++|+|+|.|+ . ++|.++|.+|+|+++++|||
T Consensus 15 v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip--~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 15 VHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTS--VNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp EEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCC--TTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred EEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcC--HHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 455565433 3578899999999999999999999998 99999999883 3 48999999999999999999
Q ss_pred EEe
Q 012177 181 LVR 183 (469)
Q Consensus 181 v~r 183 (469)
+-.
T Consensus 93 vd~ 95 (97)
T 2kj6_A 93 IDL 95 (97)
T ss_dssp EEC
T ss_pred EeC
Confidence 754
No 162
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.11 E-value=1.9e-10 Score=100.39 Aligned_cols=75 Identities=16% Similarity=0.247 Sum_probs=64.2
Q ss_pred CCCEEEEEEeCCe--EEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcC---e---ecccCCccccccCccCccceee
Q 012177 31 NDSILIFLSVGGS--VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG---R---ELARSNSRVRDYGLADGNVLHL 102 (469)
Q Consensus 31 ~~~M~I~V~l~G~--~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~G---k---~L~~D~~tL~dygI~~gstl~L 102 (469)
+..|.|+|+..+. .+++++.+++||++||.+|+.++|+|+.+|||+|.| + +|.+|+.+|.+|||++|++|||
T Consensus 4 ~~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 4 TEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp CCEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred CCEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 3467888854444 689999999999999999999999999999999987 4 4444899999999999999998
Q ss_pred eee
Q 012177 103 VLR 105 (469)
Q Consensus 103 vlr 105 (469)
+..
T Consensus 84 vd~ 86 (122)
T 1t0y_A 84 VDV 86 (122)
T ss_dssp EEC
T ss_pred EeC
Confidence 863
No 163
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.08 E-value=7.4e-11 Score=100.68 Aligned_cols=74 Identities=15% Similarity=0.127 Sum_probs=67.0
Q ss_pred ceeeeeeecceeEEEEee-cCchHHHHHHHHHHhcCCCCCCCceEEEECCE-----------E----cCCCCcccccCCC
Q 012177 110 QAITVTTVCGKVFEFHVE-RGRNVGYVKQQIAKKGREFVDLKNQELICDGE-----------E----LEDQRLITDICKR 173 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~-~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk-----------~----LeD~~tL~dy~I~ 173 (469)
|.|.||+.+|+. .++|+ +++||.+||++|+++++++ +++|+|+|.|+ . ++|+++|.+|+|+
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip--~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~ 84 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIP--IHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA 84 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCC--TTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcC--cccCEEEECCccccccCccccccccccCCCCCCHHHCCCC
Confidence 889999999976 79999 9999999999999999988 99999999888 4 5899999999999
Q ss_pred CCCEEEEEEeeCC
Q 012177 174 NEAVIHLLVRKSA 186 (469)
Q Consensus 174 ~~svI~Lv~rks~ 186 (469)
++++|||+.....
T Consensus 85 ~G~~L~l~~~~~~ 97 (107)
T 1wf9_A 85 HGSMVYLAYEGER 97 (107)
T ss_dssp TTCEEECCCSSCC
T ss_pred CCCEEEEEeCCCC
Confidence 9999999766443
No 164
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.07 E-value=4.1e-10 Score=94.13 Aligned_cols=77 Identities=13% Similarity=0.267 Sum_probs=72.0
Q ss_pred ccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012177 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks~ 186 (469)
+.|+|.|++.+|+++.++|.+++++..|++.++++.|++ +++++|+|+|++|++.+|+++|+++++++|+++++...
T Consensus 6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~G 82 (94)
T 2io1_B 6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 82 (94)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEE
T ss_pred CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 458899999999999999999999999999999999988 89999999999999999999999999999999887443
No 165
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.03 E-value=3.5e-10 Score=94.27 Aligned_cols=74 Identities=12% Similarity=0.033 Sum_probs=61.8
Q ss_pred ceeeeeeecc-eeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECC---EE----cCCCCcccccCCCCCCEEEEE
Q 012177 110 QAITVTTVCG-KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG---EE----LEDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 110 m~I~Vkt~~G-k~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~G---k~----LeD~~tL~dy~I~~~svI~Lv 181 (469)
+.|.|+.... ..+.+++++++||++||++|+.++|+| +++|+|+|.| +. ++|+++|.+|+|+++++|||+
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip--~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSP--ASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSC--TTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCC--HHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEE
Confidence 4555655433 268899999999999999999999998 9999999986 43 589999999999999999997
Q ss_pred EeeC
Q 012177 182 VRKS 185 (469)
Q Consensus 182 ~rks 185 (469)
...+
T Consensus 86 d~~P 89 (95)
T 1v6e_A 86 DHSG 89 (95)
T ss_dssp CCSC
T ss_pred ECCc
Confidence 5433
No 166
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.98 E-value=5.5e-10 Score=112.81 Aligned_cols=77 Identities=17% Similarity=0.308 Sum_probs=68.9
Q ss_pred CCCEEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEE---EcCeecccCCccccccCccCccceeeeeecc
Q 012177 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV---FEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (469)
Q Consensus 31 ~~~M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv---f~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (469)
.+.|.|+|+.+|++++++|.+++||.+||++|++++|+|+++|+|+ |.|++|. |+.+|++|+|++|++|+|+....
T Consensus 3 ~~~i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~-D~~~L~~~~ik~g~~l~L~gs~~ 81 (320)
T 3shq_A 3 VKEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAA-DNVKISALELKPNFKLMMVGSTE 81 (320)
T ss_dssp -CEEEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCC-TTSBTTSSCCC--CEEEEECCCC
T ss_pred CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccC-ccccHHHcCCCCCCEEEEEccch
Confidence 4678999988999999999999999999999999999999999999 8999998 89999999999999999987765
Q ss_pred c
Q 012177 108 D 108 (469)
Q Consensus 108 d 108 (469)
+
T Consensus 82 ~ 82 (320)
T 3shq_A 82 A 82 (320)
T ss_dssp -
T ss_pred h
Confidence 4
No 167
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.97 E-value=1.4e-09 Score=90.33 Aligned_cols=78 Identities=13% Similarity=0.298 Sum_probs=73.0
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
.+.|+|.| +.+|+.+.+.|.+++++..|+.+.+++.|+++.+++|+|+|++|. ++.|.++|++.+|++|++++++.++
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~-~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECC-TTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEEeccCC
Confidence 46799999 678999999999999999999999999999999999999999998 8999999999999999999988765
No 168
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.95 E-value=1.6e-09 Score=94.46 Aligned_cols=76 Identities=13% Similarity=0.154 Sum_probs=63.9
Q ss_pred ccceeeeeeecce-eEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECC---E---E-cCCCCcccccCCCCCCEEE
Q 012177 108 DLQAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG---E---E-LEDQRLITDICKRNEAVIH 179 (469)
Q Consensus 108 d~m~I~Vkt~~Gk-~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~G---k---~-LeD~~tL~dy~I~~~svI~ 179 (469)
+.+.|.|+...+. .+.++++++.||++||++|+...|+| +++|+|+|.| + . ++|.++|.+|+|+++++||
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip--~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ih 82 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTT--VDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIH 82 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCC--TTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCC--HHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEE
Confidence 3466677654442 68899999999999999999999998 9999999977 3 3 4899999999999999999
Q ss_pred EEEeeC
Q 012177 180 LLVRKS 185 (469)
Q Consensus 180 Lv~rks 185 (469)
|+...+
T Consensus 83 vvd~~p 88 (122)
T 1t0y_A 83 AVDVTG 88 (122)
T ss_dssp EEECTT
T ss_pred EEeCCC
Confidence 987543
No 169
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.93 E-value=3.5e-09 Score=87.94 Aligned_cols=77 Identities=13% Similarity=0.267 Sum_probs=72.0
Q ss_pred ccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012177 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks~ 186 (469)
+.|.|.|++.+|+.+.+.|.+++++..|++..+++.|++ +++++|+|+|+.|.+..|.++|+++++++|+++.++..
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~g 80 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 80 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCC--STTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 457899999999999999999999999999999999988 89999999999999999999999999999999877543
No 170
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.93 E-value=2.7e-09 Score=88.85 Aligned_cols=79 Identities=13% Similarity=0.298 Sum_probs=71.5
Q ss_pred CCCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeeccc
Q 012177 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 30 ~~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (469)
+.+.|+|.| ..+|+.+.+.|.+++++..|+...+++.|+++.+++|+|+|+.|. ++.|..+|++.++++|++++++.+
T Consensus 14 ~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~dl~medgD~Idv~~~q~G 92 (93)
T 2d07_B 14 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQQQTG 92 (93)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEEEECC--
T ss_pred CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcC-CCCCHHHcCCCCCCEEEEEeeccC
Confidence 367899999 678999999999999999999999999999999999999999998 899999999999999999988765
Q ss_pred c
Q 012177 109 L 109 (469)
Q Consensus 109 ~ 109 (469)
+
T Consensus 93 G 93 (93)
T 2d07_B 93 G 93 (93)
T ss_dssp -
T ss_pred C
Confidence 3
No 171
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.92 E-value=2.9e-09 Score=84.35 Aligned_cols=70 Identities=13% Similarity=0.264 Sum_probs=67.1
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv 181 (469)
|.|.|++.+|+.+.+.|.+++++..|++..+++.|++ +++++|+|+|+.|.+..|.++|+++++++|+++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~--~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCC--TTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC--cceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 6788999999999999999999999999999999988 899999999999999999999999999999985
No 172
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.91 E-value=1e-09 Score=89.66 Aligned_cols=71 Identities=13% Similarity=0.205 Sum_probs=61.5
Q ss_pred EEEEE-EeCCeEEEEE-eCCCCcHHHHHHHHHHHhCCCCcceEEEEc--Ceecc--cCCccccccCccCccceeeeee
Q 012177 34 ILIFL-SVGGSVIPMR-VMESDSIASVKLRIQSYNGFFVKKQKLVFE--GRELA--RSNSRVRDYGLADGNVLHLVLR 105 (469)
Q Consensus 34 M~I~V-~l~G~~~~l~-V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~--Gk~L~--~D~~tL~dygI~~gstl~Lvlr 105 (469)
|+|+| +.+|+. .++ +.+++||.+||.+|++++|+++.+|+|+|+ ++.|. +++.+|++|||.+|++|++.-.
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 78999 667755 477 999999999999999999999999999987 47873 3678999999999999998654
No 173
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.89 E-value=7.5e-09 Score=88.34 Aligned_cols=79 Identities=10% Similarity=0.209 Sum_probs=71.9
Q ss_pred CCCCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecc
Q 012177 29 LSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (469)
Q Consensus 29 ~~~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (469)
...+.|+|.| + +|+.+.+.|..++++..|+.+.+++.|+++.+++|+|+|++|. ++.|..+|++.++++|++++++.
T Consensus 27 ~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~-~~~Tp~dl~medgD~Idv~~~q~ 104 (106)
T 2eke_C 27 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQI 104 (106)
T ss_dssp CCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEEEECC-
T ss_pred CCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcC-CCCCHHHcCCCCCCEEEEEeecc
Confidence 3467899999 7 9999999999999999999999999999999999999999998 89999999999999999998876
Q ss_pred cc
Q 012177 108 DL 109 (469)
Q Consensus 108 d~ 109 (469)
++
T Consensus 105 GG 106 (106)
T 2eke_C 105 GG 106 (106)
T ss_dssp --
T ss_pred cC
Confidence 53
No 174
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.89 E-value=1.4e-09 Score=88.92 Aligned_cols=71 Identities=11% Similarity=0.098 Sum_probs=62.8
Q ss_pred ceeeeeeecceeEEEE-eecCchHHHHHHHHHHhcCCCCCCCceEEEEC--CEEcC---CCCcccccCCCCCCEEEEEEe
Q 012177 110 QAITVTTVCGKVFEFH-VERGRNVGYVKQQIAKKGREFVDLKNQELICD--GEELE---DQRLITDICKRNEAVIHLLVR 183 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~-V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~--Gk~Le---D~~tL~dy~I~~~svI~Lv~r 183 (469)
|+|.||+.+|+.. ++ ++++.||.+||++|+++.+++ +++|+|+|+ ++.|+ |+.+|++|+|.++++|+|...
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~--~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIA--PGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCC--TTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCC--ccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 7899999999754 77 999999999999999999988 899999997 47774 789999999999999998533
No 175
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.89 E-value=4.1e-09 Score=83.44 Aligned_cols=70 Identities=11% Similarity=0.313 Sum_probs=66.4
Q ss_pred CEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeee
Q 012177 33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (469)
Q Consensus 33 ~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lv 103 (469)
.|+|.| +.+|+.+.+.|.+++++..|+.+.+++.|+++.+|+|+|+|+.|. ++.|.++|++.+|++|++.
T Consensus 1 ~i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp CEEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECC-TTCCTTTTTCCTTEEEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC-CCCCHHHcCCCCCCEEEEE
Confidence 378999 678999999999999999999999999999999999999999998 8899999999999999985
No 176
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.88 E-value=5.4e-09 Score=84.39 Aligned_cols=74 Identities=14% Similarity=0.292 Sum_probs=69.0
Q ss_pred CCCCCEEEEE-EeCCe-EEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeee
Q 012177 29 LSNDSILIFL-SVGGS-VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (469)
Q Consensus 29 ~~~~~M~I~V-~l~G~-~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lv 103 (469)
..++.|+|.| ..+|+ .+.+.|.+++++..|+...+++.|+++.+|+|+|+|++|. ++.|..+|++.+|++|++.
T Consensus 3 ~~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 3 LGSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLS-GKELPADLGLESGDLIEVW 78 (79)
T ss_dssp TCCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECC-SCCCHHHHTCCTTCEEEEE
T ss_pred CCCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEe
Confidence 3567899999 77885 8999999999999999999999999999999999999998 8999999999999999874
No 177
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.87 E-value=4e-09 Score=89.76 Aligned_cols=79 Identities=13% Similarity=0.300 Sum_probs=74.0
Q ss_pred CCCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeeccc
Q 012177 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 30 ~~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (469)
..+.|+|.| ..+|+.+.+.|.+++++..|+.+.+++.|+++.+++|+|+|++|. ++.|..+|++.++++|++++++.+
T Consensus 21 ~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~-~~~Tp~dl~medgD~Idv~~~q~G 99 (104)
T 1wz0_A 21 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQQQTS 99 (104)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCC-TTSCTTTTTCCTTEEEEECCCCCC
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEEeccC
Confidence 367899999 778999999999999999999999999999999999999999998 899999999999999999988766
Q ss_pred c
Q 012177 109 L 109 (469)
Q Consensus 109 ~ 109 (469)
+
T Consensus 100 G 100 (104)
T 1wz0_A 100 G 100 (104)
T ss_dssp C
T ss_pred C
Confidence 5
No 178
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.85 E-value=8e-09 Score=83.37 Aligned_cols=73 Identities=12% Similarity=0.124 Sum_probs=68.4
Q ss_pred cccceeeeeeecce-eEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012177 107 SDLQAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 107 sd~m~I~Vkt~~Gk-~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv 181 (469)
++.|.|.|++.+|+ .+.+.|.+++++..|++..+++.|++ +++++|+|+|+.|.+..|..+|+++++++|++.
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~--~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLS--GHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCT--TCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 45688999999996 89999999999999999999999988 899999999999999999999999999999974
No 179
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.84 E-value=9.1e-09 Score=85.68 Aligned_cols=76 Identities=13% Similarity=0.266 Sum_probs=70.9
Q ss_pred cccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
...|.|.|++.+|+.+.+.|.+++++..|++..+++.|++ +++++|+|+|+.|.+..|..+|+++++++|+++++.
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~--~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q 90 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQ 90 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCC--ccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeec
Confidence 3457888999999999999999999999999999999988 899999999999999999999999999999998764
No 180
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.84 E-value=4.2e-09 Score=90.48 Aligned_cols=80 Identities=10% Similarity=0.245 Sum_probs=74.6
Q ss_pred CCCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeeccc
Q 012177 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 30 ~~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (469)
+...|+|.| +.+|+.+.+.|.+++++..|+...+++.|+++.+|+|+|+|++|. ++.|..+|++.++++|++++.+.+
T Consensus 23 ~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~-~~~Tp~dl~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 23 ETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPID-ETKTPEELGMEDDDVIDAMVEQTG 101 (110)
T ss_dssp CCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCC-SSSHHHHHHCSSEEEEEEECCCCC
T ss_pred CCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEEcccC
Confidence 367899999 788999999999999999999999999999999999999999998 899999999999999999998877
Q ss_pred cc
Q 012177 109 LQ 110 (469)
Q Consensus 109 ~m 110 (469)
++
T Consensus 102 g~ 103 (110)
T 2k8h_A 102 GL 103 (110)
T ss_dssp C-
T ss_pred cc
Confidence 64
No 181
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.80 E-value=9.7e-09 Score=85.74 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=64.7
Q ss_pred CCCEEEEEE----eCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcC-------eecccCCccccccCccCccc
Q 012177 31 NDSILIFLS----VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG-------RELARSNSRVRDYGLADGNV 99 (469)
Q Consensus 31 ~~~M~I~V~----l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~G-------k~L~~D~~tL~dygI~~gst 99 (469)
...+.|+|+ .+|+.+...+.++.||.+||.+|+..+|+|+.+|+|+|.+ ..|.+|..+|.+|+|.+|++
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~ 86 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDC 86 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCE
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCE
Confidence 455777774 4678999999999999999999999999999999999873 33777889999999999999
Q ss_pred eeeeee
Q 012177 100 LHLVLR 105 (469)
Q Consensus 100 l~Lvlr 105 (469)
||+...
T Consensus 87 I~V~d~ 92 (97)
T 1wjn_A 87 LLVRWS 92 (97)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 998753
No 182
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.80 E-value=4.5e-09 Score=106.09 Aligned_cols=76 Identities=16% Similarity=0.220 Sum_probs=66.5
Q ss_pred cceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEE---ECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012177 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI---CDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (469)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLi---f~Gk~LeD~~tL~dy~I~~~svI~Lv~rks 185 (469)
.+.|.|+ .+|+++.++|++++||.+||++|++++|+| +++|+|+ |+|+.|+|+.+|++|+|++|++|+|+....
T Consensus 5 ~i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVp--p~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~ 81 (320)
T 3shq_A 5 EVVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVR--PERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTE 81 (320)
T ss_dssp EEEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCC--GGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC
T ss_pred eEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccch
Confidence 3678888 489999999999999999999999999998 9999999 899999999999999999999999986655
Q ss_pred Cc
Q 012177 186 AK 187 (469)
Q Consensus 186 ~k 187 (469)
+.
T Consensus 82 ~~ 83 (320)
T 3shq_A 82 AD 83 (320)
T ss_dssp --
T ss_pred hh
Confidence 43
No 183
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.77 E-value=2e-08 Score=85.74 Aligned_cols=75 Identities=11% Similarity=0.201 Sum_probs=70.5
Q ss_pred cccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
...|.|.|++ +|+.+.+.|.+++++..|++..+++.|++ +.+++|+|+|+.|.+..|..+|+++++++|++++++
T Consensus 29 ~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~--~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q 103 (106)
T 2eke_C 29 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 103 (106)
T ss_dssp CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred CCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCC--cccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeec
Confidence 3558899999 99999999999999999999999999988 899999999999999999999999999999998764
No 184
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.74 E-value=1.3e-08 Score=86.64 Aligned_cols=77 Identities=13% Similarity=0.269 Sum_probs=71.5
Q ss_pred cccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012177 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (469)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks 185 (469)
.+.|.|.|++.+|+.+.+.|.+++++..|++..+++.|++ +++++|+|+|+.|.+..|..+|+++++++|++++++.
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 98 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 98 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCC--TTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCC
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCC--cceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 3458889999999999999999999999999999999988 8999999999999999999999999999999987643
No 185
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.69 E-value=1.4e-08 Score=87.16 Aligned_cols=78 Identities=15% Similarity=0.275 Sum_probs=72.4
Q ss_pred cccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012177 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (469)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks~ 186 (469)
...|.|.|++.+|+.+.+.|.+++++..|++..+++.+++ +++++|+|+|+.|.+..|..+|+++++++|++++....
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~--~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGIS--RNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTG 101 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCC--SSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccC
Confidence 4558899999999999999999999999999999999988 89999999999999999999999999999999876543
No 186
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.61 E-value=9.8e-08 Score=79.58 Aligned_cols=74 Identities=14% Similarity=0.090 Sum_probs=61.9
Q ss_pred cceeeeee---ecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECC-------EEc-CCCCcccccCCCCCCE
Q 012177 109 LQAITVTT---VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG-------EEL-EDQRLITDICKRNEAV 177 (469)
Q Consensus 109 ~m~I~Vkt---~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~G-------k~L-eD~~tL~dy~I~~~sv 177 (469)
.+.|.|+. .+|+.+...+.++.||++||.+|+...|+| +..|+|+|.+ ..| +|.++|.+|++++|++
T Consensus 9 ~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip--~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~ 86 (97)
T 1wjn_A 9 LLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVP--VSELLLSYESSKMPGREIELENDLQPLQFYSVENGDC 86 (97)
T ss_dssp EEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCC--TTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCE
T ss_pred cEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCC--hhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCE
Confidence 34555553 467888999999999999999999999998 9999999873 235 6789999999999999
Q ss_pred EEEEEee
Q 012177 178 IHLLVRK 184 (469)
Q Consensus 178 I~Lv~rk 184 (469)
||+....
T Consensus 87 I~V~d~~ 93 (97)
T 1wjn_A 87 LLVRWSG 93 (97)
T ss_dssp EEEECCS
T ss_pred EEEEecC
Confidence 9997643
No 187
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.33 E-value=2e-06 Score=74.19 Aligned_cols=75 Identities=12% Similarity=0.237 Sum_probs=69.7
Q ss_pred ccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEee
Q 012177 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rk 184 (469)
+.+.|.|++.+|+.+.+.|.+++++..|++..+++.|++ +.+++++|+|+.|.+..|..+++++++++|+++..+
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~--~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP--MNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCC--TTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCC--hhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 457788888889999999999999999999999999987 999999999999999999999999999999998764
No 188
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.31 E-value=4.5e-06 Score=78.70 Aligned_cols=79 Identities=11% Similarity=0.213 Sum_probs=73.7
Q ss_pred CCCCEEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 30 ~~~~M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
+.+.|+|.|..+|+.+.+.|..++++..|+...+++.|++..++|++|+|++|. ++.|.+++++.+|++|++++.+.++
T Consensus 26 ~~~~I~LkV~~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~-~~~TP~dL~MEdgD~Idv~~~q~gg 104 (200)
T 3pge_A 26 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQIGG 104 (200)
T ss_dssp CCCCEEEEEECSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEEEECCSCC
T ss_pred CCCeEEEEEecCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEeccCcC
Confidence 467899999668999999999999999999999999999999999999999998 8999999999999999999997543
No 189
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.22 E-value=3.2e-06 Score=72.96 Aligned_cols=74 Identities=18% Similarity=0.338 Sum_probs=68.5
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeee
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (469)
.+.|+|.| ..+|+.+.+.|..++++..|+...+++.|+++.+++++|+|+.|. ++.|..++++.++++|++.+.
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~-~~~TP~dL~MEDgD~IdV~~~ 112 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQE 112 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECC-TTCCTTTTTCCTTCEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECC-CCCCHHHcCCCCCCEEEEEee
Confidence 46788888 678899999999999999999999999999999999999999998 899999999999999998764
No 190
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.15 E-value=3.9e-06 Score=78.18 Aligned_cols=79 Identities=13% Similarity=0.207 Sum_probs=74.1
Q ss_pred CCCEEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeeccccc
Q 012177 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ 110 (469)
Q Consensus 31 ~~~M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~m 110 (469)
.+.|.|.|..+|+.+.+.|..++++..|+...+++.|+++.+++++|+|+.|. ++.|..++++.++++|++++...++.
T Consensus 55 ~e~InLKVk~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~-~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 55 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQ-ADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp CCEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECC-SSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred CCcEEEEEecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecC-CCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 56789999668999999999999999999999999999999999999999998 89999999999999999999987764
No 191
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.00 E-value=1.5e-05 Score=75.05 Aligned_cols=77 Identities=10% Similarity=0.178 Sum_probs=70.1
Q ss_pred cccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012177 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (469)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks~ 186 (469)
.+-+.|.|+ .+|+.+.+.|.+++++..|++..+++.|++ +.++|++|+|+.|.+..|..++++.++++|+++..+-.
T Consensus 27 ~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~--~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~g 103 (200)
T 3pge_A 27 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 103 (200)
T ss_dssp CCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSC--GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSC
T ss_pred CCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCC--hhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCc
Confidence 445777786 489999999999999999999999999988 99999999999999999999999999999999877544
No 192
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=97.88 E-value=2e-05 Score=73.51 Aligned_cols=79 Identities=11% Similarity=0.188 Sum_probs=71.0
Q ss_pred cccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeCC
Q 012177 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA 186 (469)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks~ 186 (469)
.+.+.|.|+ .+|+.+.+.|.+++++..|++..+++.|++ +.+++++|+|+.|.+..|..++++.++++|+++..+..
T Consensus 55 ~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~--~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~G 131 (207)
T 3tix_A 55 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIG 131 (207)
T ss_dssp CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCC--GGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCT
T ss_pred CCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCC--cccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 345677776 489999999999999999999999999988 89999999999999999999999999999999887655
Q ss_pred cc
Q 012177 187 KV 188 (469)
Q Consensus 187 kv 188 (469)
..
T Consensus 132 G~ 133 (207)
T 3tix_A 132 GL 133 (207)
T ss_dssp TG
T ss_pred CC
Confidence 43
No 193
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.87 E-value=2.2e-05 Score=65.28 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=47.7
Q ss_pred EEEEE-E-eCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeeccc-CCccccccC
Q 012177 34 ILIFL-S-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELAR-SNSRVRDYG 93 (469)
Q Consensus 34 M~I~V-~-l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~-D~~tL~dyg 93 (469)
.-|+| . ..+..+.+.|.+.+||..+|++|++++|||+.+|+|+|.|+.|.= .+.+...|.
T Consensus 13 kvvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p 75 (94)
T 4efo_A 13 MVIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP 75 (94)
T ss_dssp EEEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSC
T ss_pred eeEEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCC
Confidence 34555 3 357899999999999999999999999999999999999977651 334444443
No 194
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.83 E-value=2.3e-06 Score=80.73 Aligned_cols=81 Identities=11% Similarity=0.192 Sum_probs=1.1
Q ss_pred CCCCCEEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeeccc
Q 012177 29 LSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 29 ~~~~~M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (469)
-+.+.|.|.|..+|+.+.+.|..++++..|+...+++.|+++.++|++|+|+.|. ++.|.+++++.+|++|++++...+
T Consensus 17 ~p~e~InLKV~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~-dddTPadL~MEDGDtIDV~leQ~G 95 (227)
T 3v7o_A 17 KPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQIG 95 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCeEEEEEeCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecC-CCCCHHHcCCCCCCEEEEEecccC
Confidence 3477899999668999999999999999999999999999999999999999998 899999999999999999988776
Q ss_pred cc
Q 012177 109 LQ 110 (469)
Q Consensus 109 ~m 110 (469)
+.
T Consensus 96 G~ 97 (227)
T 3v7o_A 96 GL 97 (227)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 195
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=97.77 E-value=5.9e-06 Score=83.48 Aligned_cols=138 Identities=19% Similarity=0.212 Sum_probs=87.9
Q ss_pred cccCCCCcEEEEEeCCCCeEEEEEecCCCCCCCcCCCCCCCCCCCCCCccCCCcCCCcchhheeeeecccCCCCcccccc
Q 012177 274 PSSEGSGGAYFMQDSSGQKYISVFKPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYSLHD 353 (469)
Q Consensus 274 ~~~~gs~g~y~~~~~~g~~~~~vfKP~deEp~~~~nP~g~~~~~~~~~~~~~~~~g~~~~rEvaAylld~~~~~~~~~~~ 353 (469)
++..|++|.|||... + ...|.|+.. + -..|+=||.|-.
T Consensus 76 ~s~~Gstgvff~~td-~--~~~VVK~s~------------------------~-----l~~E~l~s~LA~---------- 113 (342)
T 1cja_A 76 RSEKGTEGLFFVETE-S--GVFIVKRST------------------------N-----IESETFCSLLCM---------- 113 (342)
T ss_dssp ECCSTTSCEEEEEES-S--CEEEEECCT------------------------T-----HHHHHHHHHHHH----------
T ss_pred eccCCCCCeEEEEeC-C--CEEEEeCcH------------------------H-----HHHHHHHHHHHH----------
Confidence 678999999999983 3 388889661 1 378888888883
Q ss_pred cccCCCCCCCeEEEEeccccc---------cCCCCCCCCCCCc-cceeEeeeecCcCCcccCC----CCCCChh---hhh
Q 012177 354 EERGFAGVPPTVMVRCLHKGF---------NHPNGYKHDLENV-KIGSLQMFVENVGSCEEMG----PRAFPVD---EVH 416 (469)
Q Consensus 354 ~~~g~~~VP~T~~v~~~~~~f---------~~~~~~~~~~~~~-k~GSlQ~fv~~~~~~~~~~----~~~f~~~---ev~ 416 (469)
.+|. -+|...+++...+.| ....+..-..+.. ...=++.|+++..-. ++. ...|..+ ++-
T Consensus 114 -~LGl-piP~~Riv~~~~~E~~e~~~~L~~~~~~~~~l~~l~~~~~~l~meyv~G~~L~-e~~~~~~~~~f~~~~~k~LG 190 (342)
T 1cja_A 114 -RLGL-HAPKVRVVSSNSEEGTNMLECLAAIDKSFRVITTLANQANILLMELVRGITLN-KLTTTSAPEVLTKSTMQQLG 190 (342)
T ss_dssp -HHTC-CCCCEEEEESSSHHHHHHHHHHHHHCSSSCHHHHHTTCSEEEEEECCCEEEST-TCCSSSHHHHSCHHHHHHHH
T ss_pred -HhCC-CCCCeeEEeeCcHHHHHHHHHHHHhhhhhHHHHHhhcccceehhhhcCCCccc-cchhhhhhhhcCHHHHHhhc
Confidence 7887 579999998774321 0110000000000 112357777753311 111 1224443 345
Q ss_pred heeeecEEEecCCCC---------CCcEEEecCCCCceEEEeeecCCccCCC
Q 012177 417 KISVLDIRLANTDRH---------AGNILVSKDEGGQIKLVPIDHGYCLPYS 459 (469)
Q Consensus 417 ki~ilD~~~~N~DR~---------~gN~Lv~~~~~~~~~l~~IDhg~~~p~~ 459 (469)
||.+||+.++|.||- .+|||+..+ ++ ++++|||+.||-..
T Consensus 191 ~Ii~FDi~InN~DR~Pl~W~n~GN~~NIL~~~~-n~--~~~~IDhn~af~~~ 239 (342)
T 1cja_A 191 SLMALDVIVNNSDRLPIAWTNEGNLDNIMLSER-GA--TVVPIDSKIIPLDA 239 (342)
T ss_dssp HHHHHHHHHTCCSSSCSSSCSCCCGGGEEEESB-TT--CEEECSCCCCCCCS
T ss_pred hhheehhhhcCCccCcccccCCCChhheEEeCC-CC--eEEEEcCCccccCC
Confidence 799999999999997 346788775 23 69999999999765
No 196
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.68 E-value=2.9e-05 Score=62.64 Aligned_cols=71 Identities=15% Similarity=0.234 Sum_probs=59.2
Q ss_pred CCEEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCee-----cccCCccccccCccCccceeee
Q 012177 32 DSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE-----LARSNSRVRDYGLADGNVLHLV 103 (469)
Q Consensus 32 ~~M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~-----L~~D~~tL~dygI~~gstl~Lv 103 (469)
+.|.|.|....-++.+++++++|+.+|+.+|+++.++++..|.++++-.+ +. .+.+|++.||+.|++|.+.
T Consensus 3 ~~m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~-~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITAS-SSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSC-CCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCC-CCCCHHHcCCCCCCEEEEe
Confidence 45888885555688899999999999999999999999999888765444 33 6789999999999999875
No 197
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.65 E-value=0.00028 Score=56.40 Aligned_cols=71 Identities=8% Similarity=0.113 Sum_probs=63.6
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCC-ceEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLK-NQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e-~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~ 182 (469)
+.+.+++.....+.+.|.++.+|..|-+.-+++.+++ ++ ..+|.|.|..|+.+.++.||.+.+++.|.+++
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~--~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKIS--FHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCC--CCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCC--cCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 4556666666789999999999999999999999998 66 99999999999999999999999999998864
No 198
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.61 E-value=3.2e-05 Score=62.37 Aligned_cols=71 Identities=10% Similarity=0.087 Sum_probs=58.2
Q ss_pred ccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEE-----cCCCCcccccCCCCCCEEEEE
Q 012177 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEE-----LEDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~-----LeD~~tL~dy~I~~~svI~Lv 181 (469)
..|.|.||+.+| ++.+++++++|+.+|+++|++..+++ .+.|.|+++-.. +.++.+|+++++++|+.|++.
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~--~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQ--NNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCC--TTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCC--CCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 347788888887 56788999999999999999999987 677777765443 347889999999999999863
No 199
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.53 E-value=0.00029 Score=58.51 Aligned_cols=64 Identities=20% Similarity=0.231 Sum_probs=50.8
Q ss_pred ecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEc--CCCCcccccC-CCCCCEEEEEE
Q 012177 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEEL--EDQRLITDIC-KRNEAVIHLLV 182 (469)
Q Consensus 117 ~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~L--eD~~tL~dy~-I~~~svI~Lv~ 182 (469)
..+..+.+.+++.+||..+|++|++++|++ +++|+|+|+|+.| +..+.-..|. -..+..|.|+-
T Consensus 21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp--~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 21 QQMTAHKIYIHSYNTATIFHELVYKQTKII--SSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp TTTEEEEEEEETTCBHHHHHHHHHHHHCCC--GGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred ccceEEEEEeccchHHHHHHHHHHHHhCCC--HHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence 357788999999999999999999999998 9999999999876 4455555665 34555665543
No 200
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.49 E-value=1.5e-05 Score=75.29 Aligned_cols=81 Identities=10% Similarity=0.174 Sum_probs=0.4
Q ss_pred eeccccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012177 104 LRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (469)
Q Consensus 104 lrLsd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~r 183 (469)
+...+.|.|.| +.+|+.+.+.|.++++...|++..+++.|++ ++++|++|+|+.|.+..|..+++++++++|+++..
T Consensus 16 ~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs--~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~le 92 (227)
T 3v7o_A 16 VKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 92 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCC--ccceEEEECCEecCCCCCHHHcCCCCCCEEEEEec
Confidence 33456688888 7799999999999999999999999999988 89999999999999999999999999999999877
Q ss_pred eCCc
Q 012177 184 KSAK 187 (469)
Q Consensus 184 ks~k 187 (469)
+...
T Consensus 93 Q~GG 96 (227)
T 3v7o_A 93 QIGG 96 (227)
T ss_dssp ---C
T ss_pred ccCC
Confidence 5554
No 201
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.43 E-value=0.0059 Score=62.03 Aligned_cols=120 Identities=15% Similarity=0.147 Sum_probs=95.9
Q ss_pred CEEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhC----CCCcceEEEEc------CeecccCCccccccCccCccceee
Q 012177 33 SILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNG----FFVKKQKLVFE------GRELARSNSRVRDYGLADGNVLHL 102 (469)
Q Consensus 33 ~M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~G----ip~~~QrLvf~------Gk~L~~D~~tL~dygI~~gstl~L 102 (469)
++.+.|.+.+.+-+|..+++.||.++-.+|.++.. .+..+--|+.. |+=|. ++++|..|+++++..+..
T Consensus 3 ~~~~~~~~~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~-~~~~l~~y~~~~~~~l~~ 81 (371)
T 3ivf_A 3 ALSLKISIGNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLE-AGKALDYYMLRNGDTMEY 81 (371)
T ss_dssp CEEEEEEETTEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECC-TTSBGGGGTCCTTCEEEE
T ss_pred cEEEEEEecceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEecc-CCCCHHHhCCCCCceeec
Confidence 34555545588999999999999999999988853 24555567662 34476 678999999999998876
Q ss_pred eeeccccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEEC
Q 012177 103 VLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD 157 (469)
Q Consensus 103 vlrLsd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~ 157 (469)
.. ..+.+.|..++|....+.++.+.|+.++=+.|+...|+. ..+.-.|++.
T Consensus 82 ~~---~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~-e~~~FgL~~~ 132 (371)
T 3ivf_A 82 RK---KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGIT-NHDEYSLVRE 132 (371)
T ss_dssp EE---CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCS-CGGGEEEECC
T ss_pred cC---ceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCC-CccccEEEEE
Confidence 54 346788889999999999999999999999999999976 3666777764
No 202
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.41 E-value=0.00061 Score=64.45 Aligned_cols=94 Identities=15% Similarity=0.233 Sum_probs=79.5
Q ss_pred CCCCCCEEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecc
Q 012177 28 KLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (469)
Q Consensus 28 ~~~~~~M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (469)
..+.+.|.|.|.-+++.+.+.|..++++..|+...+++.|++..+++++|.|+.+. ++.+..+..+.++++|.+.....
T Consensus 16 ~~~~~~i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~-~~~Tpk~L~~ed~d~I~~~~eq~ 94 (209)
T 3uf8_A 16 VKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQI 94 (209)
T ss_dssp --CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECC-TTCCTTTTTCCTTEEEEEECSCT
T ss_pred eCCCCcEEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEecc-CCCChHHhhhcccccchhhcccc
Confidence 44688999999448889999999999999999999999999999999999999998 89999999999999999998887
Q ss_pred ccceeeeeeecceeEE
Q 012177 108 DLQAITVTTVCGKVFE 123 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~~ 123 (469)
++.. ++.+.+|-.+.
T Consensus 95 Gg~t-~~~~~sGl~~~ 109 (209)
T 3uf8_A 95 GGST-VVTTESGLKYE 109 (209)
T ss_dssp TCCC-CEECTTSCEEE
T ss_pred cccc-ccCCCCceEEE
Confidence 7653 33445554433
No 203
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.34 E-value=0.00086 Score=63.39 Aligned_cols=82 Identities=10% Similarity=0.176 Sum_probs=71.0
Q ss_pred eeeccccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEE
Q 012177 103 VLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182 (469)
Q Consensus 103 vlrLsd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~ 182 (469)
++...+.+.|.|+. +|+.+.+.+.++++...|++..+++.|++ +.+++++|+|+.+.+..+..+....++++|.+..
T Consensus 15 ~~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~--~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~ 91 (209)
T 3uf8_A 15 EVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (209)
T ss_dssp ---CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred eeCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCC--hheEEEEECCEeccCCCChHHhhhcccccchhhc
Confidence 34445667788876 78888999999999999999999999988 9999999999999999999999999999999987
Q ss_pred eeCCc
Q 012177 183 RKSAK 187 (469)
Q Consensus 183 rks~k 187 (469)
.+...
T Consensus 92 eq~Gg 96 (209)
T 3uf8_A 92 EQIGG 96 (209)
T ss_dssp SCTTC
T ss_pred ccccc
Confidence 65543
No 204
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.30 E-value=0.00089 Score=55.94 Aligned_cols=73 Identities=14% Similarity=0.154 Sum_probs=65.1
Q ss_pred cccceeeeeeecce-eEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012177 107 SDLQAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 107 sd~m~I~Vkt~~Gk-~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv 181 (469)
.+.+.|.|+..+|+ .+.+.|.++++...|...-+++.++. +...+++|+|+.|....|..++.++++++|.+.
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~--~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLS--GRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCS--SSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 34466777777784 78999999999999999999999987 889999999999999999999999999999874
No 205
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.27 E-value=0.0012 Score=52.70 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=58.3
Q ss_pred eCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCc-ceEEEEcCeecccCCccccccCccCccceeeee
Q 012177 40 VGGSVIPMRVMESDSIASVKLRIQSYNGFFVK-KQKLVFEGRELARSNSRVRDYGLADGNVLHLVL 104 (469)
Q Consensus 40 l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~-~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (469)
....-+.+.|.++.+|.+|-..-..+.||+++ ..+|.|.|..|. .+.++++|++.+++.|.+++
T Consensus 17 ~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLd-p~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 17 SKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLD-PNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp SSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECC-TTSBGGGSSCCTTCEEEEEC
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccC-ccCChhhhCCcCCceeeeee
Confidence 33456888999999999999999999999999 899999999997 99999999999999998765
No 206
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.06 E-value=0.0021 Score=53.62 Aligned_cols=73 Identities=11% Similarity=0.293 Sum_probs=65.8
Q ss_pred CCCCEEEEE-EeCC-eEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeee
Q 012177 30 SNDSILIFL-SVGG-SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (469)
Q Consensus 30 ~~~~M~I~V-~l~G-~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lv 103 (469)
..+.|.|.| ...| +.+.+.|..+.++..|...-+++.|+++..-+++|+|..|. .+.|..+.++.++++|.+.
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~-~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLS-GRELPADLGMESGDLIEVW 96 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECC-SCSCHHHHTCCTTEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEe
Confidence 367788888 5677 48999999999999999999999999999999999999998 8899999999999998764
No 207
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.05 E-value=7.2e-05 Score=76.23 Aligned_cols=84 Identities=11% Similarity=0.191 Sum_probs=3.0
Q ss_pred CCCCEEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 30 ~~~~M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
+.+.|.|.|..+|+.+.+.|..++++..|+...+++.|+++.+++++|+|+.|. ++.|.+++++.+|++|++.....++
T Consensus 18 ~~~~I~LKV~~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~-~~~TP~~L~MEDgD~Idv~~~Q~g~ 96 (360)
T 3ix6_A 18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQIGG 96 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEEecCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECC-CCCChHHcCCCccchhhhhhccCch
Confidence 467788888337889999999999999999999999999999999999999998 8999999999999999999999888
Q ss_pred ceeee
Q 012177 110 QAITV 114 (469)
Q Consensus 110 m~I~V 114 (469)
|..+.
T Consensus 97 ~~~Yl 101 (360)
T 3ix6_A 97 MRTYL 101 (360)
T ss_dssp CHHHH
T ss_pred HHHHH
Confidence 76653
No 208
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=96.93 E-value=0.0036 Score=51.90 Aligned_cols=73 Identities=11% Similarity=0.052 Sum_probs=66.7
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks 185 (469)
+.|.|+ .+|..+.+.+.+++....|.+..+++.|+. +...++.|+|..+.+..|-.+++.+++++|..++.+|
T Consensus 22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~--~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~~ 94 (95)
T 2l76_A 22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVS--PSRILLLFGETELSPTATPRTLKLGVADIIDCVVLTS 94 (95)
T ss_dssp EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSC--GGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECCC
T ss_pred EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCC--hhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEecC
Confidence 666677 478899999999999999999999999988 9999999999999999999999999999999887655
No 209
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=96.75 E-value=0.0095 Score=49.39 Aligned_cols=75 Identities=15% Similarity=0.208 Sum_probs=69.2
Q ss_pred CCCCEEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeee
Q 012177 30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (469)
Q Consensus 30 ~~~~M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (469)
..+.|.|.|...|....+.|..++....|...-+++.|+.+..-++.|.|..+. ++.|-.+.++.++++|.+++-
T Consensus 18 ~~~~IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~-~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 18 TPRLFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELS-PTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp CCCCEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECC-TTSCHHHHTCCSSCEEEEEEC
T ss_pred CCCeEEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCC-CCCCHhHcCCCCCCEEEEEEe
Confidence 467799999667899999999999999999999999999999999999999998 899999999999999988753
No 210
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=96.67 E-value=0.00028 Score=71.93 Aligned_cols=81 Identities=10% Similarity=0.185 Sum_probs=0.0
Q ss_pred eeccccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012177 104 LRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (469)
Q Consensus 104 lrLsd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~r 183 (469)
+...+.+.|.|++ +|+.+.+.|.++++...|++..+++.|++ +++++++|+|+.|.+..|.++++++++++|+++..
T Consensus 16 ~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~--~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~ 92 (360)
T 3ix6_A 16 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 92 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCC--cceEEEEECCeECCCCCChHHcCCCccchhhhhhc
Confidence 3345667788886 68889999999999999999999999987 89999999999999999999999999999999877
Q ss_pred eCCc
Q 012177 184 KSAK 187 (469)
Q Consensus 184 ks~k 187 (469)
+...
T Consensus 93 Q~g~ 96 (360)
T 3ix6_A 93 QIGG 96 (360)
T ss_dssp ----
T ss_pred cCch
Confidence 5543
No 211
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.57 E-value=0.0063 Score=50.01 Aligned_cols=75 Identities=12% Similarity=0.013 Sum_probs=66.5
Q ss_pred cccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012177 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (469)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~r 183 (469)
.++|.++|-..+++..++.|.++.++.++-+.-.+++|+. +++..|.|+++.|+-...+.-.++.+++.+.|+-.
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~--~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFN--PSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCC--GGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCC--hhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 4578899988999999999999999999999999999987 89999999999998888888889999999999654
No 212
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.52 E-value=0.0042 Score=51.04 Aligned_cols=75 Identities=16% Similarity=0.102 Sum_probs=66.2
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeec
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrL 106 (469)
...|.|.| ..+++..++.|.|+.|+.+|-+.-.++.|+.+++-.|.|+++.|+ -..+++-.||.+++++.|+.+-
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lD-LSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLD-LSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEES-SSCBHHHHCCCSSCEEEEECSS
T ss_pred CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEecc-ccceeEecCCCCCCEEEEEEcc
Confidence 55678888 678999999999999999999999999999999889999999996 8889999999999999987643
No 213
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=96.50 E-value=0.00042 Score=71.18 Aligned_cols=84 Identities=11% Similarity=0.207 Sum_probs=0.0
Q ss_pred CCCEEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeeccccc
Q 012177 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ 110 (469)
Q Consensus 31 ~~~M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~m 110 (469)
.+.|.|.|.-.++.+.+.|..++++..|+...+++.|++..+++++|+|+.|. ++.|.+++++.+|++|.+.+...++.
T Consensus 28 ~~~i~lkv~~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~-~~~Tp~~l~med~d~i~~~~~q~gg~ 106 (389)
T 4da1_A 28 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQAPEDLDMEDNDIIEAHREQIGGE 106 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEEecCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC-CCCCHHHcCCCCCCEeeeeecccccc
Confidence 56677888327889999999999999999999999999999999999999998 89999999999999999988877766
Q ss_pred eeeee
Q 012177 111 AITVT 115 (469)
Q Consensus 111 ~I~Vk 115 (469)
.+.++
T Consensus 107 n~~~~ 111 (389)
T 4da1_A 107 NLYFQ 111 (389)
T ss_dssp -----
T ss_pred cccee
Confidence 55543
No 214
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=96.25 E-value=0.0093 Score=48.12 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=58.4
Q ss_pred CCEEEEEEe---CCeEEEEEeCCCCcHHHHHHHHHHHhCCCCc-----ceEEEEcCeecccCCccccccCccCccceee
Q 012177 32 DSILIFLSV---GGSVIPMRVMESDSIASVKLRIQSYNGFFVK-----KQKLVFEGRELARSNSRVRDYGLADGNVLHL 102 (469)
Q Consensus 32 ~~M~I~V~l---~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~-----~QrLvf~Gk~L~~D~~tL~dygI~~gstl~L 102 (469)
..|.|++.+ .++++-+++....||..|+..+.+..++... +-|+.-.+..|. ++..|+||+|.+|+.+.+
T Consensus 3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~-~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFS-GECKLSDCGITNGDRLEI 80 (81)
T ss_dssp CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEE-TTSBTGGGTCCTTCEEEE
T ss_pred cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEc-CCCEEeeCCcCCCCEEEE
Confidence 456777765 7899999999999999999999999988752 235556688888 899999999999998764
No 215
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.21 E-value=0.0054 Score=53.68 Aligned_cols=69 Identities=13% Similarity=0.126 Sum_probs=57.0
Q ss_pred eeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEE----------------------------------
Q 012177 111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---------------------------------- 156 (469)
Q Consensus 111 ~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif---------------------------------- 156 (469)
.+.|++++|...++.|+.+.+|..++..|+.+.|+.. .++-.|..
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n-~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL 91 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITN-HDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKL 91 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCC-CSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCC-cccccccccccccccccCchhhccccccccchhHHHHHHHHh
Confidence 6889999999999999999999999999999999872 33333332
Q ss_pred ----CCEEcCCCCcccccCCCCCCEEEE
Q 012177 157 ----DGEELEDQRLITDICKRNEAVIHL 180 (469)
Q Consensus 157 ----~Gk~LeD~~tL~dy~I~~~svI~L 180 (469)
++..|++.++|.+++|.++++|.|
T Consensus 92 ~~dd~~~WLD~srtL~EQGI~e~~tllL 119 (128)
T 2kc2_A 92 HTDDELNWLDHGRTLREQGVEEHETLLL 119 (128)
T ss_dssp CCSSSEEEECSSSCHHHHTCCTTSEEEE
T ss_pred cccCCCCcccCCCcHHHcCCCCCCEEEE
Confidence 225678899999999999999665
No 216
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=95.94 E-value=0.0012 Score=67.73 Aligned_cols=76 Identities=11% Similarity=0.191 Sum_probs=0.0
Q ss_pred cccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012177 107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (469)
Q Consensus 107 sd~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks 185 (469)
.+.+.|.|++ +|..+.+.|.++++...|++..+++.|++ +.+++++|+|+.|.+..|..+++++++++|+++..+.
T Consensus 28 ~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~--~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~ 103 (389)
T 4da1_A 28 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQI 103 (389)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCC--cceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccc
Confidence 3456777776 78888899999999999999999999988 9999999999999999999999999999999986644
No 217
>3akj_A CTKA; protein kinase, transferase; 2.00A {Helicobacter pylori} PDB: 3akk_A* 3akl_A*
Probab=95.94 E-value=0.001 Score=67.02 Aligned_cols=46 Identities=30% Similarity=0.387 Sum_probs=36.4
Q ss_pred hhhhheeeecEEEecCCCCCCcEEEecCCC-CceEEEe-eecCCccCC
Q 012177 413 DEVHKISVLDIRLANTDRHAGNILVSKDEG-GQIKLVP-IDHGYCLPY 458 (469)
Q Consensus 413 ~ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~-~~~~l~~-IDhg~~~p~ 458 (469)
+++-++.+||++|+|+|||++||=+-.+.+ |.+.|.| .|||.++..
T Consensus 139 ~~~~~~~vfn~LIgN~D~H~kN~s~l~~~~tg~~~LAP~YD~~~s~~~ 186 (325)
T 3akj_A 139 CFFWDMFVADTLLGNFDRHNGNWGFLRASNSKEYQIAPIFDCGSCLYP 186 (325)
T ss_dssp HHHHHHHHHHHHHTCSCCCGGGCEEEEESSSSCEEECCBCCCTTSSCT
T ss_pred HHHHHHHHhhHhhcCCCCCCcCeEEEEECCCCCEEecCcccccccccc
Confidence 457799999999999999999984444333 6688888 599987754
No 218
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=95.45 E-value=0.034 Score=44.78 Aligned_cols=64 Identities=11% Similarity=0.082 Sum_probs=55.6
Q ss_pred ecceeEEEEeecCchHHHHHHHHHHhcCCCCCC---CceEEEECCEEcCCCCcccccCCCCCCEEEE
Q 012177 117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDL---KNQELICDGEELEDQRLITDICKRNEAVIHL 180 (469)
Q Consensus 117 ~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~---e~QrLif~Gk~LeD~~tL~dy~I~~~svI~L 180 (469)
-.++++-+++....||..|++.+.+..++..+. ...++.-.+..|.+.++|+||.|.+|+.|.+
T Consensus 14 y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 14 YNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred cCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 368899999999999999999999999976422 3567778999999999999999999999875
No 219
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=95.31 E-value=0.012 Score=51.40 Aligned_cols=70 Identities=23% Similarity=0.271 Sum_probs=55.6
Q ss_pred EEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCc-------------------------------------ceEEE
Q 012177 35 LIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVK-------------------------------------KQKLV 76 (469)
Q Consensus 35 ~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~-------------------------------------~QrLv 76 (469)
.+.| .++|...++.|+.+.||.+++..|+.+.||+.. +|+|-
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 5677 568999999999999999999999999999855 34442
Q ss_pred E--cCeecccCCccccccCccCccceeeeee
Q 012177 77 F--EGRELARSNSRVRDYGLADGNVLHLVLR 105 (469)
Q Consensus 77 f--~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (469)
. .+.-|. +..+|.++||.+++++.|.-+
T Consensus 93 ~dd~~~WLD-~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLD-HGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEEC-SSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCccc-CCCcHHHcCCCCCCEEEEEEE
Confidence 2 123454 789999999999999877644
No 220
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=95.27 E-value=0.046 Score=48.21 Aligned_cols=79 Identities=18% Similarity=0.358 Sum_probs=54.1
Q ss_pred CCCCEEEEE-EeC------CeEEEEEeCCCCcHHHHHHHHHHH--hCCCCcc------eEEEE----cCee-cccCC---
Q 012177 30 SNDSILIFL-SVG------GSVIPMRVMESDSIASVKLRIQSY--NGFFVKK------QKLVF----EGRE-LARSN--- 86 (469)
Q Consensus 30 ~~~~M~I~V-~l~------G~~~~l~V~~sdTV~~LK~kIq~~--~Gip~~~------QrLvf----~Gk~-L~~D~--- 86 (469)
..++|.|+| ... ...+++.|...|||.++|+||-+. .|+|..+ .-|-+ .|+. |.|.+
T Consensus 21 ey~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS 100 (138)
T 2r2o_A 21 EYRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTS 100 (138)
T ss_dssp -CCEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTC
T ss_pred eeEEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcc
Confidence 367788887 321 357999999999999999999877 5665433 24444 1332 54211
Q ss_pred ---------ccccccCccCccceeeeeeccc
Q 012177 87 ---------SRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 87 ---------~tL~dygI~~gstl~LvlrLsd 108 (469)
.||+.|+|.+|+++-|+.+.+.
T Consensus 101 ~~~~~wkrLNTL~HY~V~Dga~l~l~~~~~~ 131 (138)
T 2r2o_A 101 EVQGLWRRLNTLQHYKVPDGATVALVPCLTK 131 (138)
T ss_dssp CEETTEEECCBHHHHTCCTTCEEEEEEC---
T ss_pred cccCCceeecchhccCCCCCCEEEEEECCCc
Confidence 2799999999999999887654
No 221
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=94.81 E-value=0.06 Score=45.86 Aligned_cols=75 Identities=23% Similarity=0.335 Sum_probs=51.3
Q ss_pred CCCEEEEEE-e--CCeEEEEEeCCCCcHHHHHHHHHHH--hCCCCc------ceEEEEc----CeecccCC---------
Q 012177 31 NDSILIFLS-V--GGSVIPMRVMESDSIASVKLRIQSY--NGFFVK------KQKLVFE----GRELARSN--------- 86 (469)
Q Consensus 31 ~~~M~I~V~-l--~G~~~~l~V~~sdTV~~LK~kIq~~--~Gip~~------~QrLvf~----Gk~L~~D~--------- 86 (469)
.++|.++|. . .+..+++.|...|||.++|+||-.. .|+|.. ...|-+. |+.|.+.+
T Consensus 9 ~~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~w 88 (111)
T 4e71_A 9 YAPLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRW 88 (111)
T ss_dssp CCEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---C
T ss_pred eEEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcc
Confidence 566777773 2 3467999999999999999999876 555544 3446652 55565322
Q ss_pred ---ccccccCccCccceeeeee
Q 012177 87 ---SRVRDYGLADGNVLHLVLR 105 (469)
Q Consensus 87 ---~tL~dygI~~gstl~Lvlr 105 (469)
.||+.|+|.+|+++-|+.+
T Consensus 89 krLNTL~HY~V~dgatl~l~~~ 110 (111)
T 4e71_A 89 KRVNTLMHYNVRDGATLILSKV 110 (111)
T ss_dssp CCCCBHHHHTCCTTCEEEEEEC
T ss_pred eEecchhhcCCCCCCEEEEEeC
Confidence 3688999999999988754
No 222
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=94.24 E-value=0.25 Score=41.69 Aligned_cols=78 Identities=17% Similarity=0.125 Sum_probs=62.6
Q ss_pred CCCCCCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEE--EcCeecc--cCCccccccCccCcccee
Q 012177 27 EKLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELA--RSNSRVRDYGLADGNVLH 101 (469)
Q Consensus 27 ~~~~~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~--~D~~tL~dygI~~gstl~ 101 (469)
........+|-| ..+|+.+.-....++||.+|..-|....+.+.....|+ |-.+.+. +.+.+|++.|+....+|.
T Consensus 7 ~~~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~ 86 (109)
T 2dzk_A 7 GRDRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVV 86 (109)
T ss_dssp CCCCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEE
T ss_pred CCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEE
Confidence 333456788888 45789999999999999999999999988776667776 5677786 356899999999988887
Q ss_pred eee
Q 012177 102 LVL 104 (469)
Q Consensus 102 Lvl 104 (469)
+..
T Consensus 87 v~~ 89 (109)
T 2dzk_A 87 LLP 89 (109)
T ss_dssp EEC
T ss_pred EEE
Confidence 654
No 223
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=93.80 E-value=0.24 Score=39.45 Aligned_cols=73 Identities=21% Similarity=0.267 Sum_probs=59.0
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEE--EcCeecc--cCCccccccCccCccceeeee
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELA--RSNSRVRDYGLADGNVLHLVL 104 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~--~D~~tL~dygI~~gstl~Lvl 104 (469)
....+|-| ..+|+.+.-....++||.+|..-|.. .+.+.....|+ |-.+.+. +.+.+|++.|+...++|.+..
T Consensus 5 ~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 5 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 44567777 44788888899999999999999998 67777778887 5578885 467899999999999887753
No 224
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=93.70 E-value=0.17 Score=40.41 Aligned_cols=69 Identities=10% Similarity=0.128 Sum_probs=55.4
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEE--ECCEEc---CCCCcccccCCCCCCEEEEE
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEEL---EDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLi--f~Gk~L---eD~~tL~dy~I~~~svI~Lv 181 (469)
.+|.||..+|+.+.-....++||.+|.+-|.. .+.. .....|+ |-.+.| +..++|.+.++.+.++|.+-
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~--~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFP--WDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCC--TTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCC--CCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 46777888888888788899999999999988 4444 6777888 557888 34789999999999998873
No 225
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=91.85 E-value=0.45 Score=40.83 Aligned_cols=76 Identities=22% Similarity=0.427 Sum_probs=52.9
Q ss_pred CCCEEEEE-Ee---CCeEEEEEeCCCCcHHHHHHHHHHH--hCCCCc------ceEEEE-cC---e-ecccCC-------
Q 012177 31 NDSILIFL-SV---GGSVIPMRVMESDSIASVKLRIQSY--NGFFVK------KQKLVF-EG---R-ELARSN------- 86 (469)
Q Consensus 31 ~~~M~I~V-~l---~G~~~~l~V~~sdTV~~LK~kIq~~--~Gip~~------~QrLvf-~G---k-~L~~D~------- 86 (469)
.++|.++| .. ....+++.|...|||.++|+||-.. .|+|.. ...|-+ .| + .|.+.+
T Consensus 11 ~~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~ 90 (117)
T 4e74_A 11 YKTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEN 90 (117)
T ss_dssp CCEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC--
T ss_pred cEEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecC
Confidence 55677777 32 2356899999999999999999876 566644 445665 23 3 244211
Q ss_pred -----ccccccCccCccceeeeeec
Q 012177 87 -----SRVRDYGLADGNVLHLVLRL 106 (469)
Q Consensus 87 -----~tL~dygI~~gstl~LvlrL 106 (469)
.||++|+|.+|+++-|+.+-
T Consensus 91 ~wkrLNTL~HY~V~dgatl~l~~~~ 115 (117)
T 4e74_A 91 DWKRLNTLAHYQVPDGSVVALVSKQ 115 (117)
T ss_dssp -CCCCCBHHHHTCCTTCEEEEEECC
T ss_pred cceEeccccccCCCCCCEEEEEeCC
Confidence 36889999999999987653
No 226
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=91.11 E-value=0.64 Score=40.34 Aligned_cols=66 Identities=18% Similarity=0.283 Sum_probs=48.0
Q ss_pred CeEEEEEeCCCCcHHHHHHHHHHH--hCCCC------cceEEEE-c---Cee-cccCC------------ccccccCccC
Q 012177 42 GSVIPMRVMESDSIASVKLRIQSY--NGFFV------KKQKLVF-E---GRE-LARSN------------SRVRDYGLAD 96 (469)
Q Consensus 42 G~~~~l~V~~sdTV~~LK~kIq~~--~Gip~------~~QrLvf-~---Gk~-L~~D~------------~tL~dygI~~ 96 (469)
+..+++.|...|||.++|+||-+. .++|. +...|-+ . |+. |.+.+ .||+.|+|.+
T Consensus 16 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~d 95 (127)
T 3h6n_A 16 MDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIPE 95 (127)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCCT
T ss_pred CCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCCC
Confidence 456899999999999999999876 45554 4556765 2 332 54211 3689999999
Q ss_pred ccceeeeeecc
Q 012177 97 GNVLHLVLRLS 107 (469)
Q Consensus 97 gstl~LvlrLs 107 (469)
|+++-|+.+.+
T Consensus 96 gatv~l~~~~~ 106 (127)
T 3h6n_A 96 GASLAMSLIDK 106 (127)
T ss_dssp TCEEEEEECC-
T ss_pred CCEEEEEEccc
Confidence 99999886643
No 227
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=91.03 E-value=0.68 Score=44.00 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=54.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCc-ceEEEE-c----CeecccCCccccccCccCccceeeeeecccc
Q 012177 44 VIPMRVMESDSIASVKLRIQSYNGFFVK-KQKLVF-E----GRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 44 ~~~l~V~~sdTV~~LK~kIq~~~Gip~~-~QrLvf-~----Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
.+++.++..+||.+|++++.+..+++.+ +-||-. . ...|.+.+.+|.+++|.++..|.+-++..|+
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg 224 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG 224 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 4567789999999999999999999987 578864 3 3456645689999999999999988887665
No 228
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=90.97 E-value=0.83 Score=39.35 Aligned_cols=72 Identities=17% Similarity=0.282 Sum_probs=59.1
Q ss_pred CCCEEEEEE-eCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEE--EcCeec--ccCCccccccCccCccceeee
Q 012177 31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGREL--ARSNSRVRDYGLADGNVLHLV 103 (469)
Q Consensus 31 ~~~M~I~V~-l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L--~~D~~tL~dygI~~gstl~Lv 103 (469)
....+|-|. .+|+.+.-....++||.+|..-|... +.+.....|+ |-.+.| .+.+.+|.+.|+....+|.+.
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 556788884 47888999999999999999999887 7776777777 568888 445789999999988877664
No 229
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=90.81 E-value=1 Score=42.39 Aligned_cols=66 Identities=23% Similarity=0.285 Sum_probs=53.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCc-ceEEEE-c----CeecccCCccccccCccCccceeeeeecccc
Q 012177 44 VIPMRVMESDSIASVKLRIQSYNGFFVK-KQKLVF-E----GRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 44 ~~~l~V~~sdTV~~LK~kIq~~~Gip~~-~QrLvf-~----Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
..++.++..+||.+|++++.+..+++.+ +-||-. . ...|.+.+.+|.+++|.++..|.+-++..|+
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg 212 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG 212 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 4677889999999999999999999986 577752 2 3446644679999999999999888876654
No 230
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=90.80 E-value=0.61 Score=39.21 Aligned_cols=72 Identities=19% Similarity=0.159 Sum_probs=57.2
Q ss_pred cceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEE--ECCEEcC--C-CCcccccCCCCCCEEEEEE
Q 012177 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELE--D-QRLITDICKRNEAVIHLLV 182 (469)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLi--f~Gk~Le--D-~~tL~dy~I~~~svI~Lv~ 182 (469)
..+|.||..+|+.+.-....++||.+|.+-|....+.+ .....|+ |--+++. | .++|.|.++.+.++|.+..
T Consensus 13 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~--~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 13 IARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNT--YGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp CEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTS--SCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCC--CCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 35677888888888888889999999999999886544 4556666 5677775 3 7899999999988888743
No 231
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=90.40 E-value=0.69 Score=39.87 Aligned_cols=71 Identities=10% Similarity=0.042 Sum_probs=57.6
Q ss_pred ccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEE--ECCEEc--CC-CCcccccCCCCCCEEEEE
Q 012177 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEEL--ED-QRLITDICKRNEAVIHLL 181 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLi--f~Gk~L--eD-~~tL~dy~I~~~svI~Lv 181 (469)
+..+|.||..+|+.+.-....++||.+|.+-|... +.. .....|+ |-.+.| +| ..+|.+.++.+.++|.|.
T Consensus 42 ~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~--~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYP--NERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCC--TTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCC--CCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 45678888889998888889999999999999887 544 5667777 568888 34 799999999888888774
No 232
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=90.02 E-value=1.2 Score=37.89 Aligned_cols=65 Identities=15% Similarity=0.080 Sum_probs=46.6
Q ss_pred ceeEEEEeecCchHHHHHHHHHHhc--CCCC----CCCceEEEE----CCEEcCCC-------------CcccccCCCCC
Q 012177 119 GKVFEFHVERGRNVGYVKQQIAKKG--REFV----DLKNQELIC----DGEELEDQ-------------RLITDICKRNE 175 (469)
Q Consensus 119 Gk~~~l~V~~~~TV~~LK~kI~~~~--gip~----~~e~QrLif----~Gk~LeD~-------------~tL~dy~I~~~ 175 (469)
+..+.+.|-..+||..+|+||.... |.|. .+++..|-+ .|+.|.|. +||..|.|.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4567788889999999999997663 3332 246777776 35566552 68899999999
Q ss_pred CEEEEEEe
Q 012177 176 AVIHLLVR 183 (469)
Q Consensus 176 svI~Lv~r 183 (469)
+++.|+-+
T Consensus 103 atl~l~~~ 110 (111)
T 4e71_A 103 ATLILSKV 110 (111)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEeC
Confidence 99988643
No 233
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=88.83 E-value=1.9 Score=45.99 Aligned_cols=135 Identities=8% Similarity=0.060 Sum_probs=88.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEc-Cee-------ccc----CCccccccCc-cCccceeeeeec-----
Q 012177 45 IPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE-GRE-------LAR----SNSRVRDYGL-ADGNVLHLVLRL----- 106 (469)
Q Consensus 45 ~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~-Gk~-------L~~----D~~tL~dygI-~~gstl~LvlrL----- 106 (469)
.+++|..+.|+.+||++|++..|+++++|||-.= .++ +.+ .+.++.++.- .+.-.+.|.+..
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~~~~~~~lflE~~~~~~~~ 117 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSDNENPWTIFLETVDPELAA 117 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHTSCSSEEEEEEECCHHHHT
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhccCCceEEEEEecccccCC
Confidence 3578999999999999999999999999998531 111 110 1112222211 112233332211
Q ss_pred ----------cccceeeeeeec--ceeEE----EEeecCchHHHHHHHHHHhcCCCCCCCceEEEEC------CEEcC-C
Q 012177 107 ----------SDLQAITVTTVC--GKVFE----FHVERGRNVGYVKQQIAKKGREFVDLKNQELICD------GEELE-D 163 (469)
Q Consensus 107 ----------sd~m~I~Vkt~~--Gk~~~----l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~------Gk~Le-D 163 (469)
.+-+-|++|-.+ .+++. +.|..+.+|.++-..|.+..|+| ++.--.+|. -..|+ .
T Consensus 118 ~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p--~dt~l~lyEEi~~~~ie~l~~~ 195 (530)
T 2ylm_A 118 SGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFI--QDTSLILYEEVKPNLTERIQDY 195 (530)
T ss_dssp TTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCC--TTCCEEEEEEEETTEEEECCCS
T ss_pred ccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCC--CCCceEEEEecCCCceeEcccc
Confidence 112667777644 23333 67899999999999999999988 555555553 34467 5
Q ss_pred CCccccc--CCCCCCEEEEE
Q 012177 164 QRLITDI--CKRNEAVIHLL 181 (469)
Q Consensus 164 ~~tL~dy--~I~~~svI~Lv 181 (469)
..++.+. .+.+|++|-.=
T Consensus 196 ~~t~~~~~~eL~~GdII~fQ 215 (530)
T 2ylm_A 196 DVSLDKALDELMDGDIIVFQ 215 (530)
T ss_dssp SSBHHHHSTTCCTTEEEEEE
T ss_pred cccHHHHHhcccCCCEEEEE
Confidence 7899999 89999997653
No 234
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=88.78 E-value=1.3 Score=37.04 Aligned_cols=73 Identities=21% Similarity=0.292 Sum_probs=58.1
Q ss_pred CCCEEEEEE-eCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEE--EcCeecc-cCCccccccCccCccceeeee
Q 012177 31 NDSILIFLS-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELA-RSNSRVRDYGLADGNVLHLVL 104 (469)
Q Consensus 31 ~~~M~I~V~-l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~-~D~~tL~dygI~~gstl~Lvl 104 (469)
....+|-|. .+|+.+.-....++||.+|..-|... +.......|+ |-.+.|. +.+.+|++.||....+|.+..
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 456888884 47888888999999999999999965 5555666676 5688886 457899999999988887654
No 235
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=88.19 E-value=2.2 Score=34.45 Aligned_cols=60 Identities=15% Similarity=0.255 Sum_probs=53.8
Q ss_pred EEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012177 122 FEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (469)
Q Consensus 122 ~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~r 183 (469)
+.-.++-.+++..||+.++.+.++. .+...+...+..|+++++|.|-|++-...+.+.+.
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~--L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvq 64 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCS--LDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQ 64 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSC--CSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCC--cccCeEEeeccccCCCccHHHhhcccccEEEEEEE
Confidence 4456778899999999999999987 89999999999999999999999999999988665
No 236
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=88.04 E-value=2.9 Score=44.56 Aligned_cols=115 Identities=10% Similarity=0.020 Sum_probs=74.8
Q ss_pred CCCEEEEEEeC---CeEEEEEeCCCCcHHHHHHHHHHHhCCC---CcceEEE--EcCee---cccCCccccccCccCccc
Q 012177 31 NDSILIFLSVG---GSVIPMRVMESDSIASVKLRIQSYNGFF---VKKQKLV--FEGRE---LARSNSRVRDYGLADGNV 99 (469)
Q Consensus 31 ~~~M~I~V~l~---G~~~~l~V~~sdTV~~LK~kIq~~~Gip---~~~QrLv--f~Gk~---L~~D~~tL~dygI~~gst 99 (469)
.+.|+|+.... -..+.+-|..+.||.+|-..++++.+++ ..+.||+ ++++. +. ++.+|....=....+
T Consensus 337 ~r~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~-~~~~i~~i~d~~~~~ 415 (530)
T 2ylm_A 337 RRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQ-EDELLECLSPATSRT 415 (530)
T ss_dssp BCCEEEEEECTTSCEEEEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEEC-TTSBGGGSCCCTTCE
T ss_pred CceEEEEEECCCCceEEEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecC-CCcccccccccccce
Confidence 56788876322 2366777778999999999999999987 3556664 66653 44 555665432111222
Q ss_pred eeeeeecc--------ccceeeeee-------ecceeEEEEeecCchHHHHHHHHHHhcCCC
Q 012177 100 LHLVLRLS--------DLQAITVTT-------VCGKVFEFHVERGRNVGYVKQQIAKKGREF 146 (469)
Q Consensus 100 l~LvlrLs--------d~m~I~Vkt-------~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip 146 (469)
+.+..-.. +.+.|.|-- .-|..|.+.|.+.+|..++|+||+++.|++
T Consensus 416 ~rieeip~ee~~~~~~~~~li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~ 477 (530)
T 2ylm_A 416 FRIEEIPLDQVDIDKENEMLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQ 477 (530)
T ss_dssp EEEEECCGGGSSCCTTTEEEEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCC
T ss_pred EEEEECCHHHhccCCCCcEEEEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCC
Confidence 32211111 122233311 358899999999999999999999999976
No 237
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=87.61 E-value=2.4 Score=36.74 Aligned_cols=67 Identities=10% Similarity=0.014 Sum_probs=49.5
Q ss_pred cceeEEEEeecCchHHHHHHHHHHhc--CCCC----CCCceEEEE----CCEE-cCCC-------------CcccccCCC
Q 012177 118 CGKVFEFHVERGRNVGYVKQQIAKKG--REFV----DLKNQELIC----DGEE-LEDQ-------------RLITDICKR 173 (469)
Q Consensus 118 ~Gk~~~l~V~~~~TV~~LK~kI~~~~--gip~----~~e~QrLif----~Gk~-LeD~-------------~tL~dy~I~ 173 (469)
.+..+.+.|-..+||.++|+||.... +.|. .+++..|-+ .|+. |.|. .||..|.|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 34567788889999999999997764 3332 257778877 3443 6542 688999999
Q ss_pred CCCEEEEEEee
Q 012177 174 NEAVIHLLVRK 184 (469)
Q Consensus 174 ~~svI~Lv~rk 184 (469)
+|+++.|..+.
T Consensus 95 dgatv~l~~~~ 105 (127)
T 3h6n_A 95 EGASLAMSLID 105 (127)
T ss_dssp TTCEEEEEECC
T ss_pred CCCEEEEEEcc
Confidence 99999997653
No 238
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=86.77 E-value=0.3 Score=53.08 Aligned_cols=41 Identities=37% Similarity=0.545 Sum_probs=34.5
Q ss_pred hhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccCC
Q 012177 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPY 458 (469)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p~ 458 (469)
.+.-.+|.=|++.=.|||.+|||+..+ |+ ++.||=|+||-.
T Consensus 463 S~A~ySvv~YILGigDRH~~NILld~t--G~--v~HIDFG~~f~~ 503 (614)
T 3ls8_A 463 SCAGYCVITYILGVGDRHLDNLLLTKT--GK--LFHIDFGYILGR 503 (614)
T ss_dssp HHHHHHHHHHHHTCCCCCTTSEEECTT--SC--EEECCCSSCTTC
T ss_pred HHHHHhHhheeeeccCCCCcceeEcCC--CC--EeeeehHHhhcc
Confidence 355677888899999999999999754 77 999999999954
No 239
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=86.36 E-value=2 Score=36.81 Aligned_cols=67 Identities=12% Similarity=0.136 Sum_probs=48.1
Q ss_pred ceeEEEEeecCchHHHHHHHHHHhc--CCCC----CCCceEEEE----CCE-EcCCC-------------CcccccCCCC
Q 012177 119 GKVFEFHVERGRNVGYVKQQIAKKG--REFV----DLKNQELIC----DGE-ELEDQ-------------RLITDICKRN 174 (469)
Q Consensus 119 Gk~~~l~V~~~~TV~~LK~kI~~~~--gip~----~~e~QrLif----~Gk-~LeD~-------------~tL~dy~I~~ 174 (469)
...+.+.|-..+||..+|+||.... |.|. .+++..|-+ .|+ .|.|. .||..|+|.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 3457788888999999999997663 3432 246677776 223 24442 6889999999
Q ss_pred CCEEEEEEeeC
Q 012177 175 EAVIHLLVRKS 185 (469)
Q Consensus 175 ~svI~Lv~rks 185 (469)
|+++.|+.+++
T Consensus 106 gatl~l~~~~~ 116 (117)
T 4e74_A 106 GSVVALVSKQV 116 (117)
T ss_dssp TCEEEEEECCC
T ss_pred CCEEEEEeCCc
Confidence 99999977653
No 240
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=86.28 E-value=2 Score=43.23 Aligned_cols=63 Identities=17% Similarity=0.050 Sum_probs=53.4
Q ss_pred ceeEEEEeecCchHHHHHHHHHHhcCC--CCCCCceEEEE------CCEEcCCCCcccccCCCCCCEEEEE
Q 012177 119 GKVFEFHVERGRNVGYVKQQIAKKGRE--FVDLKNQELIC------DGEELEDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 119 Gk~~~l~V~~~~TV~~LK~kI~~~~gi--p~~~e~QrLif------~Gk~LeD~~tL~dy~I~~~svI~Lv 181 (469)
+-+-+++.+++.||.++-.+|.++... ..+.++.-|+. .|.-|++.++|..|++++++.|+..
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence 556779999999999999999988752 23478889998 5677999999999999999998875
No 241
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=86.10 E-value=2.6 Score=37.08 Aligned_cols=67 Identities=12% Similarity=0.110 Sum_probs=48.1
Q ss_pred eeEEEEeecCchHHHHHHHHHHhc--CCCC----CCCceEEEE----CCE-EcCCC-------------CcccccCCCCC
Q 012177 120 KVFEFHVERGRNVGYVKQQIAKKG--REFV----DLKNQELIC----DGE-ELEDQ-------------RLITDICKRNE 175 (469)
Q Consensus 120 k~~~l~V~~~~TV~~LK~kI~~~~--gip~----~~e~QrLif----~Gk-~LeD~-------------~tL~dy~I~~~ 175 (469)
..+.+.|-..+||.++|+||.... |.|. .+++.-|-+ .|+ .|.|. .||..|+|.+|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 567888889999999999998774 3431 345666665 343 36553 48999999999
Q ss_pred CEEEEEEeeCC
Q 012177 176 AVIHLLVRKSA 186 (469)
Q Consensus 176 svI~Lv~rks~ 186 (469)
+++.|+-+.+.
T Consensus 121 a~l~l~~~~~~ 131 (138)
T 2r2o_A 121 ATVALVPCLTK 131 (138)
T ss_dssp CEEEEEEC---
T ss_pred CEEEEEECCCc
Confidence 99999777554
No 242
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=85.39 E-value=1.9 Score=36.08 Aligned_cols=70 Identities=16% Similarity=0.153 Sum_probs=54.7
Q ss_pred cceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEE--ECCEEcC--CCCcccccCCCCCCEEEEE
Q 012177 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELE--DQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLi--f~Gk~Le--D~~tL~dy~I~~~svI~Lv 181 (469)
..+|.||..+|+.+.-....++||.+|.+-|..... . +...+|+ |-.+.|. ...+|.+.++.+.++|.|.
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~~~-~--~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve 96 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVGY-H--KSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE 96 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHHTC-C--TTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcCC-C--CCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEE
Confidence 456777878888888788899999999999986633 3 4566676 5577775 4799999999999998764
No 243
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=85.24 E-value=7.2 Score=29.68 Aligned_cols=65 Identities=8% Similarity=0.102 Sum_probs=47.1
Q ss_pred CEEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecc
Q 012177 33 SILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (469)
Q Consensus 33 ~M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (469)
.|+|+|.-......+++....||.+|..++ +++...-.+..+|..+.++ . -+++|+.+.++...+
T Consensus 4 ~m~i~vNg~~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~-~-----~L~~gD~V~ii~~V~ 68 (70)
T 1ryj_A 4 GMKFTVITDDGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDE-E-----EIFDGDIIEVIRVIY 68 (70)
T ss_dssp CEEEEEEETTEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTT-S-----BCCTTCEEEEEECTT
T ss_pred eEEEEEeCccCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCc-c-----cCCCCCEEEEEeccc
Confidence 488888555556677888889999999875 4565555677899988743 2 567788887765444
No 244
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=84.99 E-value=1.7 Score=37.49 Aligned_cols=69 Identities=12% Similarity=0.151 Sum_probs=54.4
Q ss_pred cceeeeeeecceeEEEEeecCchHHHHHHHHHHhcC-CCCCCCceEEE--ECCEEcCC-CCcccccCCCCCCEEE
Q 012177 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGR-EFVDLKNQELI--CDGEELED-QRLITDICKRNEAVIH 179 (469)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~g-ip~~~e~QrLi--f~Gk~LeD-~~tL~dy~I~~~svI~ 179 (469)
..+|.||..+|+.+.-....++||.+|.+-|..... .. .....|+ |-.+.|+| ..+|.|.++.+.++|.
T Consensus 52 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~--~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~ 124 (127)
T 1s3s_G 52 TTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMA--ATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ 124 (127)
T ss_dssp CCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGG--TSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCC--CCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence 467888888998888888999999999999988642 22 4556666 56888875 7999999998865554
No 245
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=84.73 E-value=2.3 Score=34.24 Aligned_cols=48 Identities=8% Similarity=0.064 Sum_probs=42.0
Q ss_pred CCCEEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcC
Q 012177 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG 79 (469)
Q Consensus 31 ~~~M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~G 79 (469)
...|.|.|... -++.|+|.++.+..+|..+|.++..++++.-.|.|..
T Consensus 3 ~~~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 3 HMAYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp SSCEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred CCcEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 45688888655 5999999999999999999999999998888898864
No 246
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=84.51 E-value=1.6 Score=37.61 Aligned_cols=70 Identities=19% Similarity=0.289 Sum_probs=54.5
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHh-CCCCcceEEE--EcCeecccCCccccccCccCccce
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYN-GFFVKKQKLV--FEGRELARSNSRVRDYGLADGNVL 100 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~-Gip~~~QrLv--f~Gk~L~~D~~tL~dygI~~gstl 100 (469)
....+|-| ..+|+.+.-....++||.+|..-|.... +.......|+ |-.+.+.+++.+|.+.|+....++
T Consensus 50 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp SCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 34567777 4478899999999999999999999863 3444556676 568899866799999999975543
No 247
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=84.06 E-value=3.8 Score=38.80 Aligned_cols=62 Identities=15% Similarity=0.160 Sum_probs=51.7
Q ss_pred eEEEEeecCchHHHHHHHHHHhcCCCCCCC-ceEEEE-----CCEEcCC-CCcccccCCCCCCEEEEEEee
Q 012177 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLK-NQELIC-----DGEELED-QRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 121 ~~~l~V~~~~TV~~LK~kI~~~~gip~~~e-~QrLif-----~Gk~LeD-~~tL~dy~I~~~svI~Lv~rk 184 (469)
.+++.+.+.+||.+|++++.+..+++ .+ +.||-. .-..|.| ..+|.++++.++..|.+-.+.
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~--~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIP--AERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCC--TTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCC--CCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 45677899999999999999999987 65 688885 3456776 589999999999999987764
No 248
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=83.62 E-value=3.5 Score=44.53 Aligned_cols=80 Identities=18% Similarity=0.341 Sum_probs=53.6
Q ss_pred CCCCEEEEE-EeC------CeEEEEEeCCCCcHHHHHHHHHHH--hCCCCc------ceEEEE-c---Ce-ecccCC---
Q 012177 30 SNDSILIFL-SVG------GSVIPMRVMESDSIASVKLRIQSY--NGFFVK------KQKLVF-E---GR-ELARSN--- 86 (469)
Q Consensus 30 ~~~~M~I~V-~l~------G~~~~l~V~~sdTV~~LK~kIq~~--~Gip~~------~QrLvf-~---Gk-~L~~D~--- 86 (469)
...+|.++| ... ...+++.|...|||.++|+||-.. .|+|.. ...|-+ . |+ .|.+.+
T Consensus 254 e~~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts 333 (644)
T 3hm6_X 254 EYRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTS 333 (644)
T ss_dssp CCCEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTC
T ss_pred cceeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccc
Confidence 466777777 221 246899999999999999999865 566644 344554 2 33 244211
Q ss_pred ---------ccccccCccCccceeeeeecccc
Q 012177 87 ---------SRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 87 ---------~tL~dygI~~gstl~LvlrLsd~ 109 (469)
.||++|+|.+|+++-|+.+....
T Consensus 334 ~~~~~wkrLNTL~HY~V~dga~v~L~p~~~~~ 365 (644)
T 3hm6_X 334 EVQGLWRRLNTLQHYKVPDGATVALVPCLTKH 365 (644)
T ss_dssp CEETTEEECCBTTTTTCCTTCEEEEEEC----
T ss_pred eecCcceeecchhhcCCCCCcEEEEEeccccc
Confidence 37999999999999988776543
No 249
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=83.45 E-value=4 Score=44.04 Aligned_cols=80 Identities=19% Similarity=0.365 Sum_probs=53.7
Q ss_pred CCCCEEEEEE-eC---CeEEEEEeCCCCcHHHHHHHHHHH--hCCCC------cceEEEE-c---Ce-ecccCC------
Q 012177 30 SNDSILIFLS-VG---GSVIPMRVMESDSIASVKLRIQSY--NGFFV------KKQKLVF-E---GR-ELARSN------ 86 (469)
Q Consensus 30 ~~~~M~I~V~-l~---G~~~~l~V~~sdTV~~LK~kIq~~--~Gip~------~~QrLvf-~---Gk-~L~~D~------ 86 (469)
..++|.++|. .. ...+++.|...|||.++|+||-.. .|+|. +...|-+ . |+ .|.+.+
T Consensus 230 e~~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~ 309 (627)
T 3ig3_A 230 DYKTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIE 309 (627)
T ss_dssp CCCEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEE
T ss_pred cceeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCcccccc
Confidence 4667777773 22 367999999999999999999876 45554 3445554 2 22 233211
Q ss_pred ------ccccccCccCccceeeeeecccc
Q 012177 87 ------SRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 87 ------~tL~dygI~~gstl~LvlrLsd~ 109 (469)
.||++|+|.+|+++-|+.+..+.
T Consensus 310 ~~wkrLNTL~HY~V~Dga~v~L~p~~~~~ 338 (627)
T 3ig3_A 310 CDWKRVNSLAHYQVTDGSLVALVPKQVSA 338 (627)
T ss_dssp TTEEECCBTTTTTCCTTCEEEEEEC----
T ss_pred CceeEecchhhcCCCCCceEEEEeccccc
Confidence 36899999999999998876543
No 250
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=83.33 E-value=0.54 Score=51.80 Aligned_cols=41 Identities=34% Similarity=0.540 Sum_probs=34.8
Q ss_pred hhhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccCC
Q 012177 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPY 458 (469)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p~ 458 (469)
.+.-++|.=|++.=.|||.+|||+..+ |+ ++.||=|.||-.
T Consensus 537 SlA~~Svv~YILGlGDRH~~NILid~t--G~--v~HIDFG~~f~~ 577 (696)
T 2x6h_A 537 SCAGYCVITYLLGVGDRHLDNLLLTTN--GK--LFHIDFGYILGR 577 (696)
T ss_dssp HHHHHHHHHHHHTCCCCCTTTEEECTT--SC--EEECCCCSCTTC
T ss_pred HHHHHHHHHHHccCCCCCCcceEEeCC--CC--EEEEeehhhhcc
Confidence 355677888899999999999999853 77 999999999954
No 251
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=83.17 E-value=3.4 Score=33.28 Aligned_cols=61 Identities=10% Similarity=0.223 Sum_probs=52.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeee
Q 012177 44 VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105 (469)
Q Consensus 44 ~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lvlr 105 (469)
.+.-.++=.+++..||..++.+.|++.+.-.+++++..|. ++.+|.|.+++-...+.+.+.
T Consensus 4 vi~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~-~~k~LvdQcVqgeGlVQinvq 64 (89)
T 2juo_A 4 CVSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLD-PDRSLFDQGVKTDGTVQLSVQ 64 (89)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECC-TTSBTTTSSCCCCSEEEEEEE
T ss_pred hhhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccC-CCccHHHhhcccccEEEEEEE
Confidence 3445566788999999999999999999999999999987 999999999998888876654
No 252
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=80.94 E-value=4.3 Score=38.00 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=50.7
Q ss_pred eEEEEeecCchHHHHHHHHHHhcCCCCCCC-ceEEEE---C--CEEcCC-CCcccccCCCCCCEEEEEEee
Q 012177 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLK-NQELIC---D--GEELED-QRLITDICKRNEAVIHLLVRK 184 (469)
Q Consensus 121 ~~~l~V~~~~TV~~LK~kI~~~~gip~~~e-~QrLif---~--Gk~LeD-~~tL~dy~I~~~svI~Lv~rk 184 (469)
.+++.+.+.+||.+|++++.+..+++ .+ +.||-. . ...|+| .++|.++++.++..|.|-.|.
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~--~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIP--DEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCC--TTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCC--CCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 46688899999999999999999988 65 678873 2 344666 579999999999999987763
No 253
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=80.36 E-value=0.8 Score=52.76 Aligned_cols=40 Identities=40% Similarity=0.495 Sum_probs=32.7
Q ss_pred hhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccCC
Q 012177 415 VHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPY 458 (469)
Q Consensus 415 v~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p~ 458 (469)
+.-.+|.=|++.=.|||.+|||+.++ |+ ++.||=|+||-.
T Consensus 924 ~A~ysvv~YiLgigDRH~~NILid~t--G~--v~HIDFG~~f~~ 963 (1091)
T 3hhm_A 924 CAGYCVATFILGIGDRHNSNIMVKDD--GQ--LFHIDFGHFLDH 963 (1091)
T ss_dssp HHHHHHHHHHHTCCCCCTTTEEEETT--SC--EEECCCCCCSCC
T ss_pred hhhhhheEEEEeecCCCCcceEEeCC--CC--EEEEeehhhhcc
Confidence 44567788888889999999999864 77 899999999843
No 254
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=79.80 E-value=4.3 Score=31.60 Aligned_cols=65 Identities=9% Similarity=0.133 Sum_probs=46.8
Q ss_pred EEEEEEeCC-eEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 34 ILIFLSVGG-SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 34 M~I~V~l~G-~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
|+|+|++.| ....+++.++.||++|-+ +.|++++.-....+|+.+.+|. +.+|+.+.++--.+++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~-------~l~GD~VeIv~~V~G~ 66 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ-------SVEVDRVKVLRLIKGG 66 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS-------SSCCCCEEECSSCSCC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH-------CCCCCEEEEEEeeccc
Confidence 788886555 456689999999998876 5788888776778999998544 2347777765444443
No 255
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=79.04 E-value=3.9 Score=35.36 Aligned_cols=74 Identities=18% Similarity=0.296 Sum_probs=48.9
Q ss_pred CCCCEEEEEEe----C------CeEEEEEeCCCCcHHHHHHHHHHH----hCCCCc----ceEEEE-c---Ceeccc---
Q 012177 30 SNDSILIFLSV----G------GSVIPMRVMESDSIASVKLRIQSY----NGFFVK----KQKLVF-E---GRELAR--- 84 (469)
Q Consensus 30 ~~~~M~I~V~l----~------G~~~~l~V~~sdTV~~LK~kIq~~----~Gip~~----~QrLvf-~---Gk~L~~--- 84 (469)
.-+++.+.|.. . ...+++.|...|||.++|+||-.. .|+|.. ...|-+ . +..|.+
T Consensus 16 ey~tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~ 95 (126)
T 3kuz_A 16 FQGTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDS 95 (126)
T ss_dssp -CCEEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCT
T ss_pred eeEEEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCC
Confidence 45667777733 2 257999999999999999998765 477653 334443 1 222321
Q ss_pred ------CC----ccccccCccCccceeee
Q 012177 85 ------SN----SRVRDYGLADGNVLHLV 103 (469)
Q Consensus 85 ------D~----~tL~dygI~~gstl~Lv 103 (469)
++ .||+.|+|.+|+++-|+
T Consensus 96 tS~~~e~~wkrLNTL~HY~V~Dgatlal~ 124 (126)
T 3kuz_A 96 SSVILEDGITKLNTIGHYEISNGSTIKVF 124 (126)
T ss_dssp TCCBCTTSCBCCCBTGGGTCCTTCEEEEE
T ss_pred cceEecCCeeEeccccccCCCCCCEEEEe
Confidence 11 35778999999988765
No 256
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=78.95 E-value=0.8 Score=52.17 Aligned_cols=40 Identities=35% Similarity=0.458 Sum_probs=33.6
Q ss_pred hhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccCC
Q 012177 415 VHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPY 458 (469)
Q Consensus 415 v~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p~ 458 (469)
+.-+++.=|++.=.|||.+|||+..+ |+ ++.||=|.||-.
T Consensus 775 ~A~~Svv~YILGlgDRH~~NILid~t--G~--v~HIDFG~~f~~ 814 (940)
T 2wxf_A 775 CAGYCVATYVLGIGDRHSDNIMIRES--GQ--LFHIDFGHFLGN 814 (940)
T ss_dssp HHHHHHHHHHHTCCCCCGGGEEEETT--SC--EEECCCCCCTTC
T ss_pred HHHHHHHHHHhccCCCCcccEEEecC--CC--EEEEeehhhhcc
Confidence 44567778888889999999999864 77 999999999953
No 257
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.75 E-value=5.8 Score=32.07 Aligned_cols=67 Identities=16% Similarity=0.154 Sum_probs=56.0
Q ss_pred CCCCCEEEEEEe-CCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEE---cCeecccCCccccccCccC
Q 012177 29 LSNDSILIFLSV-GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF---EGRELARSNSRVRDYGLAD 96 (469)
Q Consensus 29 ~~~~~M~I~V~l-~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf---~Gk~L~~D~~tL~dygI~~ 96 (469)
.+..+.++.|.. ..+...++|+|..++.+|--.|.++-.+.+..-.|.- .+.+|+ -+.+|.||||++
T Consensus 6 ~PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~Ld-LskSLndlgirE 76 (91)
T 2daj_A 6 SGEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLD-LTKSLNDLGLRE 76 (91)
T ss_dssp CCCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCC-TTSCHHHHTCSE
T ss_pred CCccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccc-hhcchhhhhhhh
Confidence 346889999944 4577888999999999999999999999988877763 366776 889999999987
No 258
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.33 E-value=7.9 Score=31.31 Aligned_cols=63 Identities=13% Similarity=0.031 Sum_probs=52.0
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEE---CCEEcCCCCcccccCCCC
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---DGEELEDQRLITDICKRN 174 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif---~Gk~LeD~~tL~dy~I~~ 174 (469)
.++.|+-...+...+.|.|.-+.+++--.|.++.+.. ++...|.- .+++|+-.++|.||+|+.
T Consensus 11 vRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefd--p~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 11 VRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFD--PLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp EEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCC--TTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCC--hhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 3455555556778899999999999999999999966 78877775 667788899999999985
No 259
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=77.88 E-value=0.89 Score=51.89 Aligned_cols=39 Identities=36% Similarity=0.481 Sum_probs=31.5
Q ss_pred hhheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccC
Q 012177 415 VHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLP 457 (469)
Q Consensus 415 v~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p 457 (469)
+.-.+|.=|++.=.|||.+|||+..+ |+ ++.||=|.||-
T Consensus 791 ~A~ySvv~YILGigDRH~~NILid~t--G~--v~HIDFG~~f~ 829 (961)
T 1e7u_A 791 CAGYCVATFVLGIGDRHNDNIMISET--GN--LFHIDFGHILG 829 (961)
T ss_dssp HHHHHHHHHHTTCCCCCGGGEEEETT--CC--EEECCCCCC--
T ss_pred HHHHHHHHHHccccCCCCcceEEecC--CC--EEEEeehhhhc
Confidence 44566777888889999999999864 77 99999999994
No 260
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=77.77 E-value=1 Score=52.04 Aligned_cols=38 Identities=42% Similarity=0.515 Sum_probs=30.6
Q ss_pred hheeeecEEEecCCCCCCcEEEecCCCCceEEEeeecCCccC
Q 012177 416 HKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLP 457 (469)
Q Consensus 416 ~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~IDhg~~~p 457 (469)
.-++|.=|++.=.|||.+|||+.++ |+ ++.||=|.||-
T Consensus 928 A~ySvv~YILGlGDRH~~NILid~t--G~--v~HIDFG~~f~ 965 (1092)
T 2y3a_A 928 AGYCVASYVLGIGDRHSDNIMVKKT--GQ--LFHIDFGHILG 965 (1092)
T ss_dssp HHHHHHHHHTTCCCCCTTTEEECTT--SC--EEECCCSCCSS
T ss_pred HHHHHHHHHhcCCCCCCccEEEecC--CC--EEEEeehhhhh
Confidence 3455666777779999999999854 77 99999999984
No 261
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=73.23 E-value=11 Score=32.60 Aligned_cols=62 Identities=19% Similarity=0.183 Sum_probs=42.1
Q ss_pred eeEEEEeecCchHHHHHHHHHHh----cCCCCC--CCceEEEE----CCEEcCC----------C----CcccccCCCCC
Q 012177 120 KVFEFHVERGRNVGYVKQQIAKK----GREFVD--LKNQELIC----DGEELED----------Q----RLITDICKRNE 175 (469)
Q Consensus 120 k~~~l~V~~~~TV~~LK~kI~~~----~gip~~--~e~QrLif----~Gk~LeD----------~----~tL~dy~I~~~ 175 (469)
..+.+.|-..+||.++|+||... .+.|.. +++..|-+ .+..|.| . .||..|.|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 46778888999999999999654 255431 34555554 1122222 1 56788999999
Q ss_pred CEEEEE
Q 012177 176 AVIHLL 181 (469)
Q Consensus 176 svI~Lv 181 (469)
+++.|+
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 999875
No 262
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=71.20 E-value=9.9 Score=30.57 Aligned_cols=67 Identities=12% Similarity=0.160 Sum_probs=43.0
Q ss_pred CCCEEEEEEeCCeEEEEEeCCC-CcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeecc
Q 012177 31 NDSILIFLSVGGSVIPMRVMES-DSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107 (469)
Q Consensus 31 ~~~M~I~V~l~G~~~~l~V~~s-dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLs 107 (469)
...|+| +++|+.+. +... .||.+|.+.+ +++...-.+..+|+.+.+ ....++-|++|+.|.++....
T Consensus 18 ~~~M~I--~vNGe~~e--l~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~--~~~~~~~L~dGD~Vei~~~V~ 85 (87)
T 1tyg_B 18 GGRHML--QLNGKDVK--WKKDTGTIQDLLASY----QLENKIVIVERNKEIIGK--ERYHEVELCDRDVIEIVHFVG 85 (87)
T ss_dssp ----CE--EETTEEEC--CSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECG--GGTTTSBCCSSSEEEEEEECC
T ss_pred CcceEE--EECCEEEE--CCCCCCcHHHHHHHh----CCCCCCEEEEECCEECCh--hhcCCcCCCCCCEEEEEcccc
Confidence 555655 45666544 4565 8999998876 455555567788988873 344556788999988775444
No 263
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=69.67 E-value=4.2 Score=35.23 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=30.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEE
Q 012177 45 IPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF 77 (469)
Q Consensus 45 ~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf 77 (469)
.++.|..+.|+.+||..|++..|+|+++|||-.
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 467999999999999999999999999999964
No 264
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=68.75 E-value=23 Score=28.51 Aligned_cols=72 Identities=18% Similarity=0.250 Sum_probs=46.2
Q ss_pred CCCEEEEE-Ee------CC-eEEEEEeCCCCcHHHHHHHHHHHhC-C----------CCcceEEEEcCeecccCCccccc
Q 012177 31 NDSILIFL-SV------GG-SVIPMRVMESDSIASVKLRIQSYNG-F----------FVKKQKLVFEGRELARSNSRVRD 91 (469)
Q Consensus 31 ~~~M~I~V-~l------~G-~~~~l~V~~sdTV~~LK~kIq~~~G-i----------p~~~QrLvf~Gk~L~~D~~tL~d 91 (469)
..+|+|.| -+ .| ....+++....||.+|.+.+..+.. + ....-.+..+|+... . +
T Consensus 7 ~~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~-~-----~ 80 (98)
T 1vjk_A 7 HGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVS-W-----D 80 (98)
T ss_dssp --CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCC-T-----T
T ss_pred cCcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECC-C-----C
Confidence 56899998 32 23 5678888888999999999987631 1 012234556777665 2 5
Q ss_pred cCccCccceeeeeeccc
Q 012177 92 YGLADGNVLHLVLRLSD 108 (469)
Q Consensus 92 ygI~~gstl~LvlrLsd 108 (469)
+-+++|+.|.+....++
T Consensus 81 ~~L~dGDeV~i~ppv~G 97 (98)
T 1vjk_A 81 EELKDGDVVGVFPPVSG 97 (98)
T ss_dssp CBCCTTCEEEEESCC--
T ss_pred CCCCCCCEEEEECCCCC
Confidence 56778988877655443
No 265
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=68.45 E-value=8 Score=31.00 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=37.8
Q ss_pred eeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCE
Q 012177 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGE 159 (469)
Q Consensus 112 I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk 159 (469)
+.||....-++.+.|.+..+..+|.++|.++.+++ ++...|.|..+
T Consensus 6 ~~VKV~~~~tvairvp~~~~y~~L~~~l~~kL~l~--~~~~~LsYk~~ 51 (83)
T 1oey_A 6 YTLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELR--LEHTKLSYRPR 51 (83)
T ss_dssp EEEEEESSSEEEEEECTTCCHHHHHHHHHHHTTCC--GGGCCEEECCT
T ss_pred EEEEEEEEEEEEEECCCCCCHHHHHHHHHHHhCCC--cceeEEEeeCC
Confidence 33443334688899999999999999999999987 88899999664
No 266
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=66.79 E-value=23 Score=34.33 Aligned_cols=74 Identities=11% Similarity=0.001 Sum_probs=55.4
Q ss_pred ccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEE--CCEE--cCCCCcccccCCCCCCEEEEEEe
Q 012177 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC--DGEE--LEDQRLITDICKRNEAVIHLLVR 183 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif--~Gk~--LeD~~tL~dy~I~~~svI~Lv~r 183 (469)
..+.+.|..++| ++.+.++.+.|+.+|=+.|+...|+. ..+.--|.| +|.. |+..+.|.+..++.+....+..|
T Consensus 21 ~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~-e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLR-ETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCC-CGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred CeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCC-CCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 346677888888 78899999999999999999999986 255566766 4443 67778888876555555555554
No 267
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=65.14 E-value=25 Score=28.46 Aligned_cols=50 Identities=8% Similarity=0.064 Sum_probs=42.2
Q ss_pred CCCEEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcc-eEEEEcCe
Q 012177 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKK-QKLVFEGR 80 (469)
Q Consensus 31 ~~~M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~-QrLvf~Gk 80 (469)
...|+|.+.+.|..+.+.+.++.+..+|.+++++..++...+ ..|.|-..
T Consensus 4 ~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 4 GSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp SSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred CCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 456899998899999999999999999999999999987555 56667543
No 268
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=65.07 E-value=21 Score=34.23 Aligned_cols=72 Identities=19% Similarity=0.117 Sum_probs=52.1
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEE---CCE--EcCCCCcccccCCCCCCEEEEEEe
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---DGE--ELEDQRLITDICKRNEAVIHLLVR 183 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif---~Gk--~LeD~~tL~dy~I~~~svI~Lv~r 183 (469)
+.+.|...+| ++.+.++++.|+.+|=+.|+...|+. ..+.--|.+ +|. -|+..+.+.+..+..+....|..|
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~-e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLR-EVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCC-CGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCC-CcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 4567777888 67899999999999999999999986 345566776 333 366677777765555555555544
No 269
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=60.23 E-value=27 Score=25.77 Aligned_cols=62 Identities=21% Similarity=0.345 Sum_probs=42.6
Q ss_pred EEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeeccc
Q 012177 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 38 V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (469)
|+++|+.+.+ ...||.+|...+ +++...-.+..+|+.+.+ ..-.++-+++|+.+.++....+
T Consensus 2 i~vNg~~~~~---~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~--~~~~~~~L~dgD~v~i~~~V~G 63 (64)
T 2cu3_A 2 VWLNGEPRPL---EGKTLKEVLEEM----GVELKGVAVLLNEEAFLG--LEVPDRPLRDGDVVEVVALMQG 63 (64)
T ss_dssp EEETTEEECC---TTCCHHHHHHHH----TBCGGGEEEEETTEEEEG--GGCCCCCCCTTCEEEEEECCCC
T ss_pred EEECCEEEEc---CCCcHHHHHHHc----CCCCCcEEEEECCEECCc--cccCCcCCCCCCEEEEEeeccc
Confidence 3567776654 668999998876 455555567788888873 3344567888998887765443
No 270
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=59.73 E-value=15 Score=36.39 Aligned_cols=52 Identities=10% Similarity=0.204 Sum_probs=41.1
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCee-cccCCcccccc
Q 012177 41 GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE-LARSNSRVRDY 92 (469)
Q Consensus 41 ~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~-L~~D~~tL~dy 92 (469)
.-....+.+.+.+|+.++++++++.++++++.|.|.+.+.. ..+.......|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~ 372 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHF 372 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSS
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccC
Confidence 45778889999999999999999999999999999998843 33233334443
No 271
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=57.18 E-value=49 Score=26.46 Aligned_cols=69 Identities=14% Similarity=0.155 Sum_probs=44.0
Q ss_pred ccceeeeeee------cc-eeEEEEeecCchHHHHHHHHHHhcC-CC--------CCCCceEEEECCEEcCCCCcccccC
Q 012177 108 DLQAITVTTV------CG-KVFEFHVERGRNVGYVKQQIAKKGR-EF--------VDLKNQELICDGEELEDQRLITDIC 171 (469)
Q Consensus 108 d~m~I~Vkt~------~G-k~~~l~V~~~~TV~~LK~kI~~~~g-ip--------~~~e~QrLif~Gk~LeD~~tL~dy~ 171 (469)
+.|.|.|+.. .| ....+++....||.+|.+.+..... .. .......+..||+.... +.-
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 3455555542 24 3566788778899999999988742 00 00134567778887753 556
Q ss_pred CCCCCEEEEE
Q 012177 172 KRNEAVIHLL 181 (469)
Q Consensus 172 I~~~svI~Lv 181 (469)
+++++.|.++
T Consensus 83 L~dGDeV~i~ 92 (98)
T 1vjk_A 83 LKDGDVVGVF 92 (98)
T ss_dssp CCTTCEEEEE
T ss_pred CCCCCEEEEE
Confidence 7888888774
No 272
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=56.84 E-value=22 Score=27.00 Aligned_cols=57 Identities=12% Similarity=0.251 Sum_probs=37.4
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCC--cceEEEEcCeecccCCccccccCccCccceeeeeeccc
Q 012177 46 PMRVMESDSIASVKLRIQSYNGFFV--KKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 46 ~l~V~~sdTV~~LK~kIq~~~Gip~--~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (469)
++++ ...||.+|.+.+..+.++.. ..-.+..+|+.+. + .++-+++|+.+.+....++
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~-~----~~~~l~~gDeV~i~PpvsG 73 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLID-N----LNTPLKDGDVISLLPPVCG 73 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEEC-C----TTCCCCTTCEEEEECCBCC
T ss_pred EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcC-C----CCcCCCCCCEEEEECCCCC
Confidence 4566 67899999999987544321 2234556777654 2 2456778999888766554
No 273
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=56.37 E-value=61 Score=24.31 Aligned_cols=61 Identities=13% Similarity=0.035 Sum_probs=41.6
Q ss_pred cceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012177 109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv 181 (469)
.|.|.|.-.. ....+++....||.+|.+.+ +.+ ++...+..+|+.+.... -+++++.|.++
T Consensus 4 ~m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~--~~~v~vavN~~~v~~~~-----~L~~gD~V~ii 64 (70)
T 1ryj_A 4 GMKFTVITDD-GKKILESGAPRRIKDVLGEL----EIP--IETVVVKKNGQIVIDEE-----EIFDGDIIEVI 64 (70)
T ss_dssp CEEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCC--TTTEEEEETTEECCTTS-----BCCTTCEEEEE
T ss_pred eEEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCC--CCCEEEEECCEECCCcc-----cCCCCCEEEEE
Confidence 4667665322 22456677778999998766 444 56667889999987544 56778888875
No 274
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=54.49 E-value=30 Score=27.81 Aligned_cols=43 Identities=9% Similarity=0.054 Sum_probs=36.9
Q ss_pred CCEEEEEEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEE
Q 012177 32 DSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV 76 (469)
Q Consensus 32 ~~M~I~V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv 76 (469)
..|+|.+-..+-.+.|.|.++-+..+|+.||..+..+. .+.|+
T Consensus 11 ~~~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~ 53 (85)
T 1ip9_A 11 KTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQ 53 (85)
T ss_dssp CCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEE
T ss_pred CceEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEE
Confidence 66999997778899999999999999999999998884 44444
No 275
>3tpd_A Serine/threonine-protein kinase HIPA; persistence, multidrug tolerance, HIPB, transferase; 1.50A {Escherichia coli} PDB: 3tpe_A* 3tpv_B* 3tpt_A* 3hzi_A* 2wiu_A 3tpb_A 3dnu_A 3dnt_A 3dnv_A* 3fbr_A*
Probab=50.20 E-value=2 Score=44.37 Aligned_cols=37 Identities=32% Similarity=0.495 Sum_probs=30.5
Q ss_pred hhhheeeecEEEecCCCCCCcEEEecCCCCceEEEee
Q 012177 414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPI 450 (469)
Q Consensus 414 ev~ki~ilD~~~~N~DR~~gN~Lv~~~~~~~~~l~~I 450 (469)
++-|..||.+++.|+|.|+.|+=+-.+++|.++|.|.
T Consensus 294 ~~~rr~vfn~ligN~D~H~KN~s~l~~~~g~~~LaPa 330 (440)
T 3tpd_A 294 DFMKFQVFQWLIGATDGHAKNFSVFIQAGGSYRLTPF 330 (440)
T ss_dssp HHHHHHHHHHHTTCCCCCGGGCEEEECGGGCEEECCC
T ss_pred HHHHHHHhhHhhcCCcCCccceEEEEcCCCceEECch
Confidence 5667789999999999999999876544577888886
No 276
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=48.58 E-value=93 Score=25.68 Aligned_cols=73 Identities=11% Similarity=0.071 Sum_probs=57.4
Q ss_pred ceeeeeeec---ceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECC---EEcCCCCcccccCCCCCCEEEEEE
Q 012177 110 QAITVTTVC---GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG---EELEDQRLITDICKRNEAVIHLLV 182 (469)
Q Consensus 110 m~I~Vkt~~---Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~G---k~LeD~~tL~dy~I~~~svI~Lv~ 182 (469)
++|+|...+ ....++.|....-|+.|-.+|-++.+++.+-.+..|-..- ..|.-..+|.-|+|+-++.+++.-
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 445665543 3678899999999999999999888877667788887733 446788999999999999998753
No 277
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=47.71 E-value=56 Score=35.38 Aligned_cols=66 Identities=12% Similarity=0.114 Sum_probs=46.4
Q ss_pred eeEEEEeecCchHHHHHHHHHHhc--CCCC----CCCceEEEE----CCE-EcCCC-------------CcccccCCCCC
Q 012177 120 KVFEFHVERGRNVGYVKQQIAKKG--REFV----DLKNQELIC----DGE-ELEDQ-------------RLITDICKRNE 175 (469)
Q Consensus 120 k~~~l~V~~~~TV~~LK~kI~~~~--gip~----~~e~QrLif----~Gk-~LeD~-------------~tL~dy~I~~~ 175 (469)
..+.+.|-..+||..+|+||-... |.|. .+++..|-+ .|+ .|.|. .||.+|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 457788889999999999997552 3332 246666765 233 35442 68999999999
Q ss_pred CEEEEEEeeC
Q 012177 176 AVIHLLVRKS 185 (469)
Q Consensus 176 svI~Lv~rks 185 (469)
+++.|+-+..
T Consensus 354 a~v~L~p~~~ 363 (644)
T 3hm6_X 354 ATVALVPCLT 363 (644)
T ss_dssp CEEEEEEC--
T ss_pred cEEEEEeccc
Confidence 9999866543
No 278
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=47.26 E-value=31 Score=26.62 Aligned_cols=60 Identities=13% Similarity=0.152 Sum_probs=40.4
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv 181 (469)
|+|.|+........+++....||++|- +..+++ ++...+..||+.+..+.. + +++.|.++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL----~~Lgl~--~~~VvV~vNG~~v~~d~~-----l-~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLV----RAVDLS--PHEVTVLVDGRPVPEDQS-----V-EVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHH----HTTCCC--SSCCCEECCCCCCCTTSS-----S-CCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHH----HHcCCC--cceEEEEECCEECCHHHC-----C-CCCEEEEE
Confidence 567777653344557888889998864 456776 777777789988865442 2 36676663
No 279
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=47.23 E-value=52 Score=35.53 Aligned_cols=68 Identities=9% Similarity=0.093 Sum_probs=47.0
Q ss_pred ceeEEEEeecCchHHHHHHHHHHhc--CCCC----CCCceEEEE----CCE-EcCCC-------------CcccccCCCC
Q 012177 119 GKVFEFHVERGRNVGYVKQQIAKKG--REFV----DLKNQELIC----DGE-ELEDQ-------------RLITDICKRN 174 (469)
Q Consensus 119 Gk~~~l~V~~~~TV~~LK~kI~~~~--gip~----~~e~QrLif----~Gk-~LeD~-------------~tL~dy~I~~ 174 (469)
...+.+.|-..+||..+|+||-... |.|. .+++..|-+ .|+ .|.|. .||.+|+|.+
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 3567788889999999999997663 3331 356677765 233 24331 6899999999
Q ss_pred CCEEEEEEeeCC
Q 012177 175 EAVIHLLVRKSA 186 (469)
Q Consensus 175 ~svI~Lv~rks~ 186 (469)
|+++.|+-+...
T Consensus 326 ga~v~L~p~~~~ 337 (627)
T 3ig3_A 326 GSLVALVPKQVS 337 (627)
T ss_dssp TCEEEEEEC---
T ss_pred CceEEEEecccc
Confidence 999999776543
No 280
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=46.61 E-value=33 Score=25.50 Aligned_cols=65 Identities=11% Similarity=0.010 Sum_probs=40.1
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEeeC
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS 185 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~rks 185 (469)
|.|.|...+|+. .++....|+.++-+.+..... ....-...+|+..+- ++-+++++.|.++-..+
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~----~~~vaa~vNg~lvdl-----~~~L~~~~~Veivt~~~ 65 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG----DHCIGAKVNHKLVPL-----SYVLNSGDQVEVLSSKS 65 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH----HTEEEEEETTEECCT-----TCBCCSSSBEEEEECCC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc----cceEEEEECCEEeCC-----CcCcCCCCEEEEEECCC
Confidence 567777667876 455678899998777732221 112233468887663 34556778888765443
No 281
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=45.88 E-value=48 Score=26.72 Aligned_cols=48 Identities=13% Similarity=0.033 Sum_probs=38.0
Q ss_pred eeeee-ecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEE
Q 012177 112 ITVTT-VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEE 160 (469)
Q Consensus 112 I~Vkt-~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~ 160 (469)
|.||. ..|..+.+.++++.+-.+|.++++...+.. ..+.-.|.|..++
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~-~~~~f~lky~DEe 55 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFD-NEQLFTMKWIDEE 55 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCC-SSCCEEEEECCSS
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCC-CCCeEEEEEECCC
Confidence 45555 357888899999999999999999999975 2345788887765
No 282
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=45.72 E-value=32 Score=28.34 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=32.4
Q ss_pred CCEEEEEEeC--------CeEEEEEeCCCCcHHHHHHHHHHHhCCC
Q 012177 32 DSILIFLSVG--------GSVIPMRVMESDSIASVKLRIQSYNGFF 69 (469)
Q Consensus 32 ~~M~I~V~l~--------G~~~~l~V~~sdTV~~LK~kIq~~~Gip 69 (469)
.+|+|.|... +.++.|.|.++.+..+|..+|.++.+++
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 4588888544 6689999999999999999999998875
No 283
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=45.58 E-value=56 Score=34.94 Aligned_cols=72 Identities=15% Similarity=0.108 Sum_probs=52.4
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEEC---C--EEcCCCCcccccCCCCCCEEEEEEe
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD---G--EELEDQRLITDICKRNEAVIHLLVR 183 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~---G--k~LeD~~tL~dy~I~~~svI~Lv~r 183 (469)
+.+.|..++| ++.+.|+++.|+.+|=..|+...|+. ..+.--|.|- | ..|+..+.|.+..+..+....|.+|
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~-e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLR-EVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCC-CGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCC-CccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 5567777888 67899999999999999999999986 3566677763 2 2356667777665555555555544
No 284
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=44.54 E-value=16 Score=31.51 Aligned_cols=33 Identities=12% Similarity=-0.005 Sum_probs=29.5
Q ss_pred EEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEE
Q 012177 122 FEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC 156 (469)
Q Consensus 122 ~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif 156 (469)
.++.|..+.|+.++|.+|++..|++ +++|||-.
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~--~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFP--QDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCC--GGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCC--cccEEEEE
Confidence 4578889999999999999999988 89999874
No 285
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=43.58 E-value=31 Score=26.51 Aligned_cols=62 Identities=10% Similarity=0.150 Sum_probs=44.2
Q ss_pred EEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeeccc
Q 012177 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 38 V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (469)
|+++|+...+ ...||.+|-+. .++++..--+..+|..+.+ ....++-+++|+.|.++-...+
T Consensus 3 I~vNG~~~e~---~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr--~~~~~~~L~dGD~veIv~~VgG 64 (73)
T 2kl0_A 3 VTINGEQREV---QSASVAALMTE----LDCTGGHFAVALNYDVVPR--GKWDETPVTAGDEIEILTPRQG 64 (73)
T ss_dssp EEETTEEECC---CCSBHHHHHHH----TTCCSSSCEEEESSSEECH--HHHTTCBCCTTCEEEEECCCCC
T ss_pred EEECCEEEEc---CCCcHHHHHHH----cCCCCCcEEEEECCEECCh--HHcCcccCCCCCEEEEEccccC
Confidence 3456765544 66899998764 5677777778899999974 4555677889999887655443
No 286
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=43.17 E-value=37 Score=26.44 Aligned_cols=63 Identities=17% Similarity=0.254 Sum_probs=43.6
Q ss_pred EEeCCeEEEEEeC--CCCcHHHHHHHHHHHhCCC-CcceEEEEcCeecccCCccccccCccCccceeeeeeccc
Q 012177 38 LSVGGSVIPMRVM--ESDSIASVKLRIQSYNGFF-VKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 38 V~l~G~~~~l~V~--~sdTV~~LK~kIq~~~Gip-~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (469)
|+++|+... +. ...||.+|-..+ +++ ...--+..+|..+.+ ....++-+++|+.|.++-...+
T Consensus 3 I~vNGe~~e--~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr--~~~~~~~L~dGD~IEIv~~VgG 68 (78)
T 2k5p_A 3 LTVNGKPST--VDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLER--EAFDATTVKDGDAVEFLYFMGG 68 (78)
T ss_dssp EEETTEEEE--CSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCT--THHHHCEECSSBCEEECCCCCC
T ss_pred EEECCEEEE--cCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECCh--HHcCcccCCCCCEEEEEeeecC
Confidence 355676544 45 568999988754 566 555567899999984 4555677888999887655443
No 287
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=41.87 E-value=51 Score=27.17 Aligned_cols=44 Identities=11% Similarity=0.072 Sum_probs=36.4
Q ss_pred CCCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcce
Q 012177 30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQ 73 (469)
Q Consensus 30 ~~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~Q 73 (469)
+....-|.| ..+|+..+|.|++++|+.++-+.+..+.+.....-
T Consensus 6 ~~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~ 50 (100)
T 1wgr_A 6 SGRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDET 50 (100)
T ss_dssp CCSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCC
T ss_pred cCCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCC
Confidence 355667777 67899999999999999999999999988765443
No 288
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=41.82 E-value=90 Score=25.78 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=51.5
Q ss_pred CEEEEEE-eC---CeEEEEEeCCCCcHHHHHHHHHHHhCCCCcc--eEEEEc--CeecccCCccccccCccCccceeeee
Q 012177 33 SILIFLS-VG---GSVIPMRVMESDSIASVKLRIQSYNGFFVKK--QKLVFE--GRELARSNSRVRDYGLADGNVLHLVL 104 (469)
Q Consensus 33 ~M~I~V~-l~---G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~--QrLvf~--Gk~L~~D~~tL~dygI~~gstl~Lvl 104 (469)
.+.|+|+ ++ ....+++|..+.-|.-|-.+|-++..++.+- --|-.. .+=|.+-..+|..|||+.++.++...
T Consensus 19 eL~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 19 ELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 3667773 33 2679999999999999999999887765432 233332 11233478899999999999988654
No 289
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=40.31 E-value=79 Score=24.47 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=41.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHHhCCCC-----------cceEEEEcCeecccCCccccccCccCccceeeeeeccc
Q 012177 43 SVIPMRVMESDSIASVKLRIQSYNGFFV-----------KKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 43 ~~~~l~V~~sdTV~~LK~kIq~~~Gip~-----------~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (469)
....+++....||.+|.+.+..+..--. ..-.+..+|+... . ++-+++|+.|.+....++
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~-~-----~~~l~~gDeV~i~Ppv~G 88 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAA-L-----GEATAAGDELALFPPVSG 88 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECC-T-----TSBCCTTCEEEEECCCSC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECC-C-----CcccCCCCEEEEECCCCC
Confidence 6778888888999999999988742100 1135556777765 3 456778998888766554
No 290
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=40.27 E-value=21 Score=39.05 Aligned_cols=51 Identities=25% Similarity=0.375 Sum_probs=41.7
Q ss_pred CCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEc-CeecccCCcccccc
Q 012177 41 GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE-GRELARSNSRVRDY 92 (469)
Q Consensus 41 ~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~-Gk~L~~D~~tL~dy 92 (469)
..+...+.+.+++|+.+++.+|++.+|++++.|.+++. |..+. .......|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~-p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALN-SAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCC-TTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCC-CCcchhhh
Confidence 45677889999999999999999999999999999986 44454 55555554
No 291
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=40.16 E-value=1.9e+02 Score=27.29 Aligned_cols=68 Identities=12% Similarity=0.117 Sum_probs=46.4
Q ss_pred CEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcc-eEEEEc---Cee--cccCCccccccCccCccceee
Q 012177 33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKK-QKLVFE---GRE--LARSNSRVRDYGLADGNVLHL 102 (469)
Q Consensus 33 ~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~-QrLvf~---Gk~--L~~D~~tL~dygI~~gstl~L 102 (469)
+|.+.| .++| ++.+.|+++.|+.+|=..|.++.|+.... --|.+. |.. |. .+..+.+.++..+....|
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd-~~~~l~~q~~~~~~~~~l 75 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLK-LNKKVTAQDVRKESPLLF 75 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECC-SSSBGGGSCBCCCSSEEE
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecc-cccCHHhhccCCCCCEEE
Confidence 467788 4455 78899999999999999999999997554 345442 322 43 566777665544444333
No 292
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=40.09 E-value=55 Score=31.55 Aligned_cols=63 Identities=13% Similarity=0.024 Sum_probs=48.3
Q ss_pred ccceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEEC---C--EEcCCCCcccccC
Q 012177 108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD---G--EELEDQRLITDIC 171 (469)
Q Consensus 108 d~m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~---G--k~LeD~~tL~dy~ 171 (469)
..+.+.|..++|....+.|++..|+.+|=+.|+...|+. ..+.--|.|- | .-|+..+.+.+..
T Consensus 16 ~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~-e~~~FgL~~~~~~~~~~wLd~~k~i~~q~ 83 (296)
T 3qij_A 16 FQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLL-EEDYFGLAIWDNATSKTWLDSAKEIKKQV 83 (296)
T ss_dssp -CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCS-SGGGEEEEEEEETTEEEECCTTSBHHHHC
T ss_pred ceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCC-CcceeEEEEEcCCCccchhccchhHHHhc
Confidence 347778888999999999999999999999999999976 3555677763 2 2256666666553
No 293
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=39.48 E-value=1e+02 Score=25.73 Aligned_cols=75 Identities=11% Similarity=0.101 Sum_probs=46.1
Q ss_pred CCCEEEEEEe-------CC--eEEEEEeCC---CCcHHHHHHHHHHHhCCCCcceEE-------------EEcCeecccC
Q 012177 31 NDSILIFLSV-------GG--SVIPMRVME---SDSIASVKLRIQSYNGFFVKKQKL-------------VFEGRELARS 85 (469)
Q Consensus 31 ~~~M~I~V~l-------~G--~~~~l~V~~---sdTV~~LK~kIq~~~Gip~~~QrL-------------vf~Gk~L~~D 85 (469)
..+|+|.|.+ .| +.+.+++.. ..||.+|...+.+.. +..+.+| +.+|+...
T Consensus 9 ~~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~-- 84 (114)
T 1wgk_A 9 AAPLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWE-- 84 (114)
T ss_dssp CCCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHH--
T ss_pred CCCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeee--
Confidence 3569999832 23 367788874 359999999998775 1112222 22333211
Q ss_pred CccccccCccCccceeeeeecccc
Q 012177 86 NSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 86 ~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
..-=.+|-+++|+.|.++..++++
T Consensus 85 ~l~gldt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 85 LLGELDYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp HHCTTTCBCCSSEEEEEEECSCCC
T ss_pred ccCCcCcCCCCCCEEEEeCCCCCC
Confidence 001135778999999888877776
No 294
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=39.23 E-value=79 Score=24.73 Aligned_cols=61 Identities=8% Similarity=0.112 Sum_probs=38.0
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCC------C-------CcceEEEEcCeecccCCccccccCccCccceeeeeecccc
Q 012177 46 PMRVMESDSIASVKLRIQSYNGF------F-------VKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL 109 (469)
Q Consensus 46 ~l~V~~sdTV~~LK~kIq~~~Gi------p-------~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd~ 109 (469)
.+++ ...||.+|...+..+..- . ...-.+..+|+... ... =.++-+++|+.|.+....+++
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~-~~~-~~~~~L~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVR-FSG-GLATAIADGDSVTILPAVAGG 93 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGG-GTT-GGGCBCCTTCEEEEEECCTTC
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEcc-CcC-CCCcCCCCCCEEEEECCCCCC
Confidence 4564 467999999999877420 0 01234556777665 211 124668889999887766553
No 295
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=39.03 E-value=1.2e+02 Score=28.98 Aligned_cols=71 Identities=7% Similarity=0.008 Sum_probs=50.5
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcc-eEEEE--cCee--cccCCccccccCccCccceeee
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKK-QKLVF--EGRE--LARSNSRVRDYGLADGNVLHLV 103 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~-QrLvf--~Gk~--L~~D~~tL~dygI~~gstl~Lv 103 (469)
.+.+.+.| .++| ++.+.|+++.|+.+|=..|.++.|+.... --|.| .|.. |. .+..|.+.++..+....+.
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~-~~~~i~~q~~~~~~~~~l~ 96 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLK-MDKKVLDHDVSKEEPVTFH 96 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECC-TTSBGGGSSCCCSSSEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCC-CccCHHHcCCCCCCCEEEE
Confidence 67788889 5677 78899999999999999999999998543 34554 3332 54 6677877765554444333
No 296
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=38.63 E-value=52 Score=24.27 Aligned_cols=63 Identities=8% Similarity=0.131 Sum_probs=41.8
Q ss_pred EEeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeeccc
Q 012177 38 LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 38 V~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (469)
|+++|+.+ ++....||.+|...+ +++...-.+..+|+.+.+ ....++-+++|+.+.++....+
T Consensus 3 i~vNg~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~--~~~~~~~L~~gD~v~i~~~V~G 65 (66)
T 1f0z_A 3 ILFNDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPR--EQWAQHIVQDGDQILLFQVIAG 65 (66)
T ss_dssp EEESSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECH--HHHTTCCCCTTEEECEEESCCC
T ss_pred EEECCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCc--hhcCCcCCCCCCEEEEEeeccc
Confidence 34566654 445778999999876 455555566778888763 2334566888998887654443
No 297
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=36.03 E-value=1e+02 Score=23.13 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=34.5
Q ss_pred EEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012177 124 FHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 124 l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv 181 (469)
+++ ...||.+|.+.+....+...-.....+..||+...+ .+.-+++++.|.++
T Consensus 16 ~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLL 68 (74)
T ss_dssp EEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEE
T ss_pred Eee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEE
Confidence 556 567999999999865332200144566678877542 34457788888875
No 298
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=34.58 E-value=80 Score=31.01 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=34.5
Q ss_pred ceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCE
Q 012177 119 GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGE 159 (469)
Q Consensus 119 Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk 159 (469)
-....+.+.+..|+..+++++++..+++ ++.|.|++.+.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~t~i~--~~~q~~l~~~~ 359 (396)
T 4eut_A 321 MTAHKIYIHSYNTATIFHELVYKQTKII--SSNQELIYEGR 359 (396)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCC--STTEEEESSSS
T ss_pred ceEEEEEcCchhHHHHHHHHHHHhcCCC--hhhhHHHhcCC
Confidence 4556688889999999999999999988 89999999883
No 299
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=33.87 E-value=1.8e+02 Score=23.11 Aligned_cols=62 Identities=15% Similarity=0.175 Sum_probs=37.6
Q ss_pred eEEEEEeC--CCCcHHHHHHHHHHHhCCCCcc-------e------EEEEcCeecccCCccc--cccCccCccceeeeee
Q 012177 43 SVIPMRVM--ESDSIASVKLRIQSYNGFFVKK-------Q------KLVFEGRELARSNSRV--RDYGLADGNVLHLVLR 105 (469)
Q Consensus 43 ~~~~l~V~--~sdTV~~LK~kIq~~~Gip~~~-------Q------rLvf~Gk~L~~D~~tL--~dygI~~gstl~Lvlr 105 (469)
+...+++. ...||.+|...+.++..-.... . .+..+|+... .+ .++-+++|+.+.+...
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~----~~~~~d~~L~dgDeVa~~Pp 95 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWE----LEGEKDYILEDGDIISFTST 95 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGG----GGTGGGCBCCTTCEEEEEEC
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcc----ccCCCCcCcCCCCEEEEECC
Confidence 56777776 6789999999998875311000 1 1223443221 11 3567888998887766
Q ss_pred ccc
Q 012177 106 LSD 108 (469)
Q Consensus 106 Lsd 108 (469)
.++
T Consensus 96 v~G 98 (99)
T 2qjl_A 96 LHG 98 (99)
T ss_dssp TTC
T ss_pred CCC
Confidence 554
No 300
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=31.82 E-value=1.6e+02 Score=22.66 Aligned_cols=57 Identities=11% Similarity=0.168 Sum_probs=39.6
Q ss_pred eeEEEEeecCchHHHHHHHHHHhcCCC----CC-----CCceEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012177 120 KVFEFHVERGRNVGYVKQQIAKKGREF----VD-----LKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 120 k~~~l~V~~~~TV~~LK~kI~~~~gip----~~-----~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv 181 (469)
....+++....||.+|.+.+....... .+ .....+.-||+.... +.-+++++.|.++
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~ 83 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALF 83 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEE
Confidence 456778877889999999998876311 00 012577789988764 4557788888875
No 301
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=27.66 E-value=72 Score=28.33 Aligned_cols=31 Identities=13% Similarity=0.055 Sum_probs=27.3
Q ss_pred CCCEEEEEEeCCeEEEEEeCCCCcHHHHHHH
Q 012177 31 NDSILIFLSVGGSVIPMRVMESDSIASVKLR 61 (469)
Q Consensus 31 ~~~M~I~V~l~G~~~~l~V~~sdTV~~LK~k 61 (469)
.+.|.|.++++|+.+.+++.+++||.++-..
T Consensus 7 ~~~m~i~~~ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 7 SQLMRISATINGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp CCCEEEEEEETTEEEEEEECTTSBHHHHHHH
T ss_pred CCcceEEEEECCEEEEEecCCCCcHHHHHHh
Confidence 5679999999999999999999999887654
No 302
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=23.60 E-value=86 Score=23.43 Aligned_cols=59 Identities=3% Similarity=0.016 Sum_probs=39.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHHhCCCCcce--EEEEcCeecccCCccccccCccCccceeeeeeccc
Q 012177 43 SVIPMRVMESDSIASVKLRIQSYNGFFVKKQ--KLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 43 ~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~Q--rLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (469)
....+++....||.+|.+.+..... ....- .+..+|+... .+ .-+++|+.+.+....++
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~-~~-----~~L~~gD~V~i~ppv~G 76 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQ-KS-----DFIQPNDTVALIPPVSG 76 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEEC-TT-----SEECTTCEEEEECSCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECC-CC-----CCcCCCCEEEEECCCCC
Confidence 4567777778899999999877631 01122 5667888876 32 45677888877654443
No 303
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=23.49 E-value=2.5e+02 Score=29.80 Aligned_cols=70 Identities=9% Similarity=0.068 Sum_probs=47.7
Q ss_pred CCCEEEEE-EeCCeEEEEEeCCCCcHHHHHHHHHHHhCCCCcc-eEEEEcC---e--ecccCCccccccCccCccceee
Q 012177 31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKK-QKLVFEG---R--ELARSNSRVRDYGLADGNVLHL 102 (469)
Q Consensus 31 ~~~M~I~V-~l~G~~~~l~V~~sdTV~~LK~kIq~~~Gip~~~-QrLvf~G---k--~L~~D~~tL~dygI~~gstl~L 102 (469)
+..|.+.| .++| ++.+.|+++.|+.+|=..|....|+.... .-|.|.. . -|. .+.++.+.++..+..+.|
T Consensus 2 ~k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd-~~k~i~~q~~~~~~~~~L 78 (575)
T 2i1j_A 2 PKSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIK-LYKKVMQQDVKKENPLQF 78 (575)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECC-TTSBGGGSCBCCCSSEEE
T ss_pred CceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhh-ccccHHHhcccCCCCeEE
Confidence 35678888 5566 78899999999999999999999997543 4555532 1 233 556676665554444433
No 304
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=22.85 E-value=2.7e+02 Score=21.53 Aligned_cols=57 Identities=11% Similarity=0.181 Sum_probs=36.3
Q ss_pred EEEeecCchHHHHHHHHHHhcCCC----CC-------CCceEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012177 123 EFHVERGRNVGYVKQQIAKKGREF----VD-------LKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 123 ~l~V~~~~TV~~LK~kI~~~~gip----~~-------~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv 181 (469)
.+++ ...||.+|.+.+..+.... .+ .....+..||+......-+ +.-+++++.|.++
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L~~gDeV~i~ 87 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAIADGDSVTIL 87 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBCCTTCEEEEE
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCCCCCCEEEEE
Confidence 4564 4579999999998875310 00 1135677788877642222 4457889998875
No 305
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=22.85 E-value=1.1e+02 Score=22.95 Aligned_cols=59 Identities=8% Similarity=0.120 Sum_probs=37.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHHhC-----CCCcceEEEEcCeecccCCccccccCccCccceeeeeeccc
Q 012177 43 SVIPMRVMESDSIASVKLRIQSYNG-----FFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 43 ~~~~l~V~~sdTV~~LK~kIq~~~G-----ip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (469)
....++ ....||.+|.+.+..+.. +....-.+..+|+... . +.-+++|+.|.+....++
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~-~-----~~~l~~gD~V~i~Ppv~G 80 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVS-F-----DHPLTDGDEVAFFPPVTG 80 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECC-T-----TCBCCTTCEEEEECCCCC
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECC-C-----CCCCCCCCEEEEeCCCCC
Confidence 455666 567899999999875521 1112234667787764 3 446778998887765544
No 306
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=22.58 E-value=2.3e+02 Score=21.49 Aligned_cols=60 Identities=13% Similarity=0.218 Sum_probs=37.6
Q ss_pred EEeCCCCcHHHHHHHHHHHhC------C-----CCcceEEEEcCeecccCCccccccCccCccceeeeeeccc
Q 012177 47 MRVMESDSIASVKLRIQSYNG------F-----FVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 47 l~V~~sdTV~~LK~kIq~~~G------i-----p~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (469)
+++....||.+|.+.+..+.. + ....-.+..+|+...+ . .-.++-+++|+.|.+....++
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~-~-~~~~~~l~~gD~V~i~ppv~G 89 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITS-M-KGLDTEIKDDDKIDLFPPVAG 89 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGG-T-CSSSCBCCTTCEEEEECCTTC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccc-c-CCCCcCCCCCCEEEEeCCCCC
Confidence 345567899999999987741 1 0122346677877652 1 223456788998887765544
No 307
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=22.44 E-value=1.9e+02 Score=22.93 Aligned_cols=61 Identities=10% Similarity=0.055 Sum_probs=39.2
Q ss_pred cceeeeeeecceeEEEEeecC-chHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 012177 109 LQAITVTTVCGKVFEFHVERG-RNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL 181 (469)
Q Consensus 109 ~m~I~Vkt~~Gk~~~l~V~~~-~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv 181 (469)
.|.|+ .+|+.+. +... .||.+|.+.+ ++. ++...+..+|+.+... ...+.-+++++.|.++
T Consensus 20 ~M~I~---vNGe~~e--l~~~~~Tv~dLL~~L----~~~--~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~ 81 (87)
T 1tyg_B 20 RHMLQ---LNGKDVK--WKKDTGTIQDLLASY----QLE--NKIVIVERNKEIIGKE-RYHEVELCDRDVIEIV 81 (87)
T ss_dssp --CEE---ETTEEEC--CSSSCCBHHHHHHHT----TCT--TSCCEEEETTEEECGG-GTTTSBCCSSSEEEEE
T ss_pred ceEEE---ECCEEEE--CCCCCCcHHHHHHHh----CCC--CCCEEEEECCEECChh-hcCCcCCCCCCEEEEE
Confidence 46565 4577544 4565 7999987765 444 5666788899987531 1223457888998876
No 308
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=21.87 E-value=1e+02 Score=25.26 Aligned_cols=60 Identities=15% Similarity=0.215 Sum_probs=41.8
Q ss_pred ceeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEE--E----CCEEcCCCCccccc
Q 012177 110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--C----DGEELEDQRLITDI 170 (469)
Q Consensus 110 m~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLi--f----~Gk~LeD~~tL~dy 170 (469)
..|.|-..+|....+.|+...|+.++=+++..+.+... ...-.|+ + --+-++|+..+-+.
T Consensus 10 ~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~-~~~WaLvE~~P~L~~ER~~EDHE~vvev 75 (100)
T 1wgr_A 10 HVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALS-DETWGLVECHPHLALERGLEDHESVVEV 75 (100)
T ss_dssp EEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCC-CCCCCEEEEETTTTEEEEECSSSCHHHH
T ss_pred EEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCC-CCCeEEEEecCCCCcEEeccCchhHHHH
Confidence 44555567899999999999999999999999987542 3333333 1 12446776665554
No 309
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=21.47 E-value=1.9e+02 Score=22.38 Aligned_cols=62 Identities=19% Similarity=0.130 Sum_probs=41.2
Q ss_pred eeeeeeecceeEEEEeecCchHHHHHHHHHHhcCCCCCCCceEEEECCEEcCCCCcccccCCCCCCEEEEEEe
Q 012177 111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183 (469)
Q Consensus 111 ~I~Vkt~~Gk~~~l~V~~~~TV~~LK~kI~~~~gip~~~e~QrLif~Gk~LeD~~tL~dy~I~~~svI~Lv~r 183 (469)
.|+|.|.+|..+ ++....|+.++=..|....+-. -.--..+|+... -++-+++|++|.++-.
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~lg~~----~v~AkVNG~~v~-----L~~~L~~gd~VeIit~ 68 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAVGNR----MIGAKVDGRIVP-----IDYKVKTGEIIDVLTT 68 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCHHHHHT----EEEEEETTEEEC-----TTCBCCTTCBEEEEEC
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhhhhhcc----eEEEEECCEEcC-----CCcccCCCCEEEEEcc
Confidence 578888999875 4558889999877776554311 112334777665 2456788888887543
No 310
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=20.66 E-value=48 Score=25.39 Aligned_cols=53 Identities=13% Similarity=0.253 Sum_probs=35.9
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCcceEEEEcCeecccCCccccccCccCccceeeeeeccc
Q 012177 46 PMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD 108 (469)
Q Consensus 46 ~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~LvlrLsd 108 (469)
++++....||.+|.+.+ +++...-.+..+|+...+ + +-|++|+.|.+....++
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~-~-----~~L~dGD~V~i~ppv~G 76 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLE-D-----DEVKDGDFVEVIPVVSG 76 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECS-S-----SCCCSSCCCBCSCCCCC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCC-C-----CCcCCCCEEEEEccccc
Confidence 34556678999998765 455555567788888873 2 56778888877654443
No 311
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=20.02 E-value=1.7e+02 Score=25.18 Aligned_cols=52 Identities=12% Similarity=0.234 Sum_probs=34.9
Q ss_pred CCcHHHHHHHHHHHhCCCC-------cceEEEEcCeecccCCccccccCccCccceeee
Q 012177 52 SDSIASVKLRIQSYNGFFV-------KKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103 (469)
Q Consensus 52 sdTV~~LK~kIq~~~Gip~-------~~QrLvf~Gk~L~~D~~tL~dygI~~gstl~Lv 103 (469)
..|..+|-..|+.+.|... ..++|+|.=--=.+-+++|.+.|++.|+.|.+.
T Consensus 19 ~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~ 77 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFS 77 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEE
T ss_pred ccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEE
Confidence 4688888888888888753 135555532111113478999999999977654
Done!