Query 012178
Match_columns 469
No_of_seqs 270 out of 1089
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 04:18:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012178.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012178hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 3.3E-16 1.1E-20 128.5 3.6 59 260-318 7-66 (82)
2 4ati_A MITF, microphthalmia-as 99.6 1.7E-15 5.8E-20 132.1 7.4 67 251-317 19-89 (118)
3 1an4_A Protein (upstream stimu 99.5 2.4E-15 8.2E-20 117.7 3.1 55 257-311 3-63 (65)
4 1a0a_A BHLH, protein (phosphat 99.5 1.6E-15 5.4E-20 119.5 1.3 54 259-312 2-62 (63)
5 4h10_B Circadian locomoter out 99.5 5E-15 1.7E-19 119.8 3.9 58 259-316 8-66 (71)
6 4h10_A ARYL hydrocarbon recept 99.5 6.6E-15 2.3E-19 119.4 0.6 51 259-309 9-63 (73)
7 1nkp_B MAX protein, MYC proto- 99.4 4.3E-14 1.5E-18 115.4 4.2 59 260-318 3-63 (83)
8 1hlo_A Protein (transcription 99.4 6.2E-14 2.1E-18 114.0 4.8 60 259-318 12-73 (80)
9 3u5v_A Protein MAX, transcript 99.4 2.9E-13 9.8E-18 110.4 5.3 59 259-317 5-67 (76)
10 1nkp_A C-MYC, MYC proto-oncoge 99.4 4.4E-13 1.5E-17 111.6 6.2 58 260-317 7-67 (88)
11 1nlw_A MAD protein, MAX dimeri 99.3 2.7E-12 9.1E-17 105.4 5.6 58 261-318 3-63 (80)
12 1mdy_A Protein (MYOD BHLH doma 99.0 4.9E-11 1.7E-15 95.5 1.6 51 261-311 14-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.0 2.6E-10 8.7E-15 89.2 4.0 52 261-312 4-58 (60)
14 4f3l_A Mclock, circadian locom 99.0 3.5E-10 1.2E-14 111.4 5.9 55 257-311 10-65 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 6.9E-10 2.4E-14 110.8 3.0 52 259-310 13-68 (387)
16 2lfh_A DNA-binding protein inh 98.7 8.4E-09 2.9E-13 83.1 2.8 44 266-309 21-67 (68)
17 4ath_A MITF, microphthalmia-as 98.6 4.7E-08 1.6E-12 81.4 6.1 48 270-317 3-54 (83)
18 4aya_A DNA-binding protein inh 98.0 1.3E-05 4.6E-10 68.4 6.9 49 267-315 33-84 (97)
19 3fx7_A Putative uncharacterize 63.1 12 0.00041 31.8 5.5 24 297-320 65-88 (94)
20 2wt7_A Proto-oncogene protein 38.2 49 0.0017 25.3 4.9 39 267-318 1-39 (63)
21 3muj_A Transcription factor CO 37.8 41 0.0014 30.3 5.0 35 273-307 95-133 (138)
22 1p3q_Q VPS9P, vacuolar protein 26.6 65 0.0022 24.7 3.8 24 265-288 3-26 (54)
23 1a7t_A Metallo-beta-lactamase; 20.6 53 0.0018 29.2 2.7 31 282-312 200-230 (232)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.59 E-value=3.3e-16 Score=128.55 Aligned_cols=59 Identities=29% Similarity=0.493 Sum_probs=56.1
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhcCCC-CCcchhhHHHHHHHHHHHHHHHHHHHhccc
Q 012178 260 TDPHSIAERLRRERIAERMKALQELVPNA-NKTDKASMLDEIIDYVKFLQLQVKVLSMSR 318 (469)
Q Consensus 260 ~~~Hs~aERkRReKINerf~aLrsLVP~~-~K~DKASIL~eAIdYIK~LQ~qVk~Le~~r 318 (469)
+..|+++||+||++||++|.+|+.|||++ .|+||++||.+||+||++||.+++.|+.+.
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~ 66 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQEN 66 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999998 899999999999999999999999999875
No 2
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.58 E-value=1.7e-15 Score=132.14 Aligned_cols=67 Identities=33% Similarity=0.509 Sum_probs=51.9
Q ss_pred hhhhccCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCC----CcchhhHHHHHHHHHHHHHHHHHHHhcc
Q 012178 251 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPNAN----KTDKASMLDEIIDYVKFLQLQVKVLSMS 317 (469)
Q Consensus 251 r~Rarr~~~~~~Hs~aERkRReKINerf~aLrsLVP~~~----K~DKASIL~eAIdYIK~LQ~qVk~Le~~ 317 (469)
+...++..++.+|+++||+||++||++|.+|+.|||.+. |++|++||.+||+||++||.+++.|++.
T Consensus 19 ~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 19 RALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566678899999999999999999999999999884 6789999999999999999999999865
No 3
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.53 E-value=2.4e-15 Score=117.71 Aligned_cols=55 Identities=24% Similarity=0.459 Sum_probs=50.8
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCC------CcchhhHHHHHHHHHHHHHHHH
Q 012178 257 GQATDPHSIAERLRRERIAERMKALQELVPNAN------KTDKASMLDEIIDYVKFLQLQV 311 (469)
Q Consensus 257 ~~~~~~Hs~aERkRReKINerf~aLrsLVP~~~------K~DKASIL~eAIdYIK~LQ~qV 311 (469)
..++..|+++||+||++||+.|.+|+.|||.+. |++|++||.+||+||++||+++
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999885 7899999999999999999865
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.52 E-value=1.6e-15 Score=119.54 Aligned_cols=54 Identities=28% Similarity=0.476 Sum_probs=49.0
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhhcCCC-------CCcchhhHHHHHHHHHHHHHHHHH
Q 012178 259 ATDPHSIAERLRRERIAERMKALQELVPNA-------NKTDKASMLDEIIDYVKFLQLQVK 312 (469)
Q Consensus 259 ~~~~Hs~aERkRReKINerf~aLrsLVP~~-------~K~DKASIL~eAIdYIK~LQ~qVk 312 (469)
++.+|+++||+||++||+.|.+|+.|||.+ .|.+|++||++||+||++||++|+
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999966 456699999999999999998763
No 5
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.51 E-value=5e-15 Score=119.77 Aligned_cols=58 Identities=22% Similarity=0.358 Sum_probs=52.9
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhhcCCC-CCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 012178 259 ATDPHSIAERLRRERIAERMKALQELVPNA-NKTDKASMLDEIIDYVKFLQLQVKVLSM 316 (469)
Q Consensus 259 ~~~~Hs~aERkRReKINerf~aLrsLVP~~-~K~DKASIL~eAIdYIK~LQ~qVk~Le~ 316 (469)
++.+|+++||+||++||++|.+|++|||.. .|+||++||++||+||++||.++.-|+-
T Consensus 8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~~ 66 (71)
T 4h10_B 8 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLEH 66 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 346799999999999999999999999975 6999999999999999999999887753
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.46 E-value=6.6e-15 Score=119.35 Aligned_cols=51 Identities=31% Similarity=0.460 Sum_probs=47.3
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhhcCCC----CCcchhhHHHHHHHHHHHHHH
Q 012178 259 ATDPHSIAERLRRERIAERMKALQELVPNA----NKTDKASMLDEIIDYVKFLQL 309 (469)
Q Consensus 259 ~~~~Hs~aERkRReKINerf~aLrsLVP~~----~K~DKASIL~eAIdYIK~LQ~ 309 (469)
++..|+++||+||++||++|.+|+.|||.| .|+||++||+.||+|||.|+.
T Consensus 9 rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 9 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 346899999999999999999999999977 699999999999999999974
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.44 E-value=4.3e-14 Score=115.35 Aligned_cols=59 Identities=24% Similarity=0.495 Sum_probs=54.7
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhcCCC--CCcchhhHHHHHHHHHHHHHHHHHHHhccc
Q 012178 260 TDPHSIAERLRRERIAERMKALQELVPNA--NKTDKASMLDEIIDYVKFLQLQVKVLSMSR 318 (469)
Q Consensus 260 ~~~Hs~aERkRReKINerf~aLrsLVP~~--~K~DKASIL~eAIdYIK~LQ~qVk~Le~~r 318 (469)
+..|+..||+||++||+.|..|+.+||.+ .|++|++||.+||+||++|+.+++.|+.+.
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~ 63 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999975 799999999999999999999999998764
No 8
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.43 E-value=6.2e-14 Score=114.02 Aligned_cols=60 Identities=23% Similarity=0.485 Sum_probs=56.0
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhhcCCC--CCcchhhHHHHHHHHHHHHHHHHHHHhccc
Q 012178 259 ATDPHSIAERLRRERIAERMKALQELVPNA--NKTDKASMLDEIIDYVKFLQLQVKVLSMSR 318 (469)
Q Consensus 259 ~~~~Hs~aERkRReKINerf~aLrsLVP~~--~K~DKASIL~eAIdYIK~LQ~qVk~Le~~r 318 (469)
++..|+..||+||.+||+.|..|+.+||.+ .|++|++||..||+||++|+.+++.|+.+.
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~ 73 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346799999999999999999999999977 699999999999999999999999998765
No 9
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.38 E-value=2.9e-13 Score=110.43 Aligned_cols=59 Identities=24% Similarity=0.334 Sum_probs=50.2
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhhcCCC---CCc-chhhHHHHHHHHHHHHHHHHHHHhcc
Q 012178 259 ATDPHSIAERLRRERIAERMKALQELVPNA---NKT-DKASMLDEIIDYVKFLQLQVKVLSMS 317 (469)
Q Consensus 259 ~~~~Hs~aERkRReKINerf~aLrsLVP~~---~K~-DKASIL~eAIdYIK~LQ~qVk~Le~~ 317 (469)
++..|+..||+||++||++|.+|+.+||.+ .|. .|..||..||+||++|++++++++.-
T Consensus 5 rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~~ 67 (76)
T 3u5v_A 5 KRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLN 67 (76)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 457899999999999999999999999953 455 69999999999999999999998753
No 10
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.37 E-value=4.4e-13 Score=111.59 Aligned_cols=58 Identities=24% Similarity=0.397 Sum_probs=53.6
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhcCCC---CCcchhhHHHHHHHHHHHHHHHHHHHhcc
Q 012178 260 TDPHSIAERLRRERIAERMKALQELVPNA---NKTDKASMLDEIIDYVKFLQLQVKVLSMS 317 (469)
Q Consensus 260 ~~~Hs~aERkRReKINerf~aLrsLVP~~---~K~DKASIL~eAIdYIK~LQ~qVk~Le~~ 317 (469)
+..|++.||+||++||++|..|+.+||.+ .|++|++||.+||+||++|+.+.+.|...
T Consensus 7 R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~ 67 (88)
T 1nkp_A 7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISE 67 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999976 59999999999999999999999988765
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.28 E-value=2.7e-12 Score=105.40 Aligned_cols=58 Identities=21% Similarity=0.220 Sum_probs=53.7
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhhcCCC---CCcchhhHHHHHHHHHHHHHHHHHHHhccc
Q 012178 261 DPHSIAERLRRERIAERMKALQELVPNA---NKTDKASMLDEIIDYVKFLQLQVKVLSMSR 318 (469)
Q Consensus 261 ~~Hs~aERkRReKINerf~aLrsLVP~~---~K~DKASIL~eAIdYIK~LQ~qVk~Le~~r 318 (469)
..|+..||+||..||++|..|+.+||.+ .|++|++||.+||+||++|+++.+.|+.+.
T Consensus 3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~ 63 (80)
T 1nlw_A 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQI 63 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999965 688899999999999999999999988764
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.02 E-value=4.9e-11 Score=95.51 Aligned_cols=51 Identities=22% Similarity=0.370 Sum_probs=47.2
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhhcCCC--CCcchhhHHHHHHHHHHHHHHHH
Q 012178 261 DPHSIAERLRRERIAERMKALQELVPNA--NKTDKASMLDEIIDYVKFLQLQV 311 (469)
Q Consensus 261 ~~Hs~aERkRReKINerf~aLrsLVP~~--~K~DKASIL~eAIdYIK~LQ~qV 311 (469)
..|+..||+|+..||+.|..|+.+||.. .|++|..||..||+||++|++.+
T Consensus 14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999965 68999999999999999999765
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.98 E-value=2.6e-10 Score=89.21 Aligned_cols=52 Identities=21% Similarity=0.243 Sum_probs=47.2
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhhcCCC---CCcchhhHHHHHHHHHHHHHHHHH
Q 012178 261 DPHSIAERLRRERIAERMKALQELVPNA---NKTDKASMLDEIIDYVKFLQLQVK 312 (469)
Q Consensus 261 ~~Hs~aERkRReKINerf~aLrsLVP~~---~K~DKASIL~eAIdYIK~LQ~qVk 312 (469)
..|+..||+|+..||+.|..||.+||.. .|+.|..||..||+||++|++.++
T Consensus 4 ~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 4 MKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 3578999999999999999999999965 589999999999999999998753
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.98 E-value=3.5e-10 Score=111.38 Aligned_cols=55 Identities=25% Similarity=0.419 Sum_probs=42.9
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHhhcC-CCCCcchhhHHHHHHHHHHHHHHHH
Q 012178 257 GQATDPHSIAERLRRERIAERMKALQELVP-NANKTDKASMLDEIIDYVKFLQLQV 311 (469)
Q Consensus 257 ~~~~~~Hs~aERkRReKINerf~aLrsLVP-~~~K~DKASIL~eAIdYIK~LQ~qV 311 (469)
..++..|+++||+||+|||+.|.+|++||| ...|+||++||..||+|||.|+...
T Consensus 10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 345678999999999999999999999999 5579999999999999999998643
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.86 E-value=6.9e-10 Score=110.80 Aligned_cols=52 Identities=31% Similarity=0.436 Sum_probs=47.6
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhhcC----CCCCcchhhHHHHHHHHHHHHHHH
Q 012178 259 ATDPHSIAERLRRERIAERMKALQELVP----NANKTDKASMLDEIIDYVKFLQLQ 310 (469)
Q Consensus 259 ~~~~Hs~aERkRReKINerf~aLrsLVP----~~~K~DKASIL~eAIdYIK~LQ~q 310 (469)
++.+|+.+||+||+|||+.|.+|+.||| ...|+||++||..||+|||.|+..
T Consensus 13 ~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 13 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 3568999999999999999999999999 558999999999999999999843
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.66 E-value=8.4e-09 Score=83.06 Aligned_cols=44 Identities=25% Similarity=0.402 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC---CCcchhhHHHHHHHHHHHHHH
Q 012178 266 AERLRRERIAERMKALQELVPNA---NKTDKASMLDEIIDYVKFLQL 309 (469)
Q Consensus 266 aERkRReKINerf~aLrsLVP~~---~K~DKASIL~eAIdYIK~LQ~ 309 (469)
.||+|+..||+.|..||.+||.. .|+.|..||..||+||..||+
T Consensus 21 rER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 21 EPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 37899999999999999999966 689999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.61 E-value=4.7e-08 Score=81.40 Aligned_cols=48 Identities=27% Similarity=0.428 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhhcCCC----CCcchhhHHHHHHHHHHHHHHHHHHHhcc
Q 012178 270 RRERIAERMKALQELVPNA----NKTDKASMLDEIIDYVKFLQLQVKVLSMS 317 (469)
Q Consensus 270 RReKINerf~aLrsLVP~~----~K~DKASIL~eAIdYIK~LQ~qVk~Le~~ 317 (469)
-|..||++|.+|..|||.+ .|.+|.+||.++|+||++||++++.+.+.
T Consensus 3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~ 54 (83)
T 4ath_A 3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 54 (83)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999976 46899999999999999999988888765
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.96 E-value=1.3e-05 Score=68.39 Aligned_cols=49 Identities=27% Similarity=0.362 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC---CCcchhhHHHHHHHHHHHHHHHHHHHh
Q 012178 267 ERLRRERIAERMKALQELVPNA---NKTDKASMLDEIIDYVKFLQLQVKVLS 315 (469)
Q Consensus 267 ERkRReKINerf~aLrsLVP~~---~K~DKASIL~eAIdYIK~LQ~qVk~Le 315 (469)
||.|=..||+.|..||.+||.. .|+.|..+|..||+||++|++.++.-.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~ 84 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHL 84 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5677788999999999999965 689999999999999999998776543
No 19
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=63.11 E-value=12 Score=31.77 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccccC
Q 012178 297 LDEIIDYVKFLQLQVKVLSMSRLG 320 (469)
Q Consensus 297 L~eAIdYIK~LQ~qVk~Le~~r~~ 320 (469)
.+.+=+||.+|.++|+.|++.+++
T Consensus 65 ~e~a~e~vp~L~~~i~vle~~~~~ 88 (94)
T 3fx7_A 65 DEAAQEQIAWLKERIRVLEEDYLE 88 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHhHHHHHHHHHhHHHHHH
Confidence 457889999999999999998754
No 20
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=38.23 E-value=49 Score=25.33 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHHHHHHHhccc
Q 012178 267 ERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSR 318 (469)
Q Consensus 267 ERkRReKINerf~aLrsLVP~~~K~DKASIL~eAIdYIK~LQ~qVk~Le~~r 318 (469)
||++|.+...++.+-+. =..-.+||..|+.+|..|+..+
T Consensus 1 Ekr~rrrerNR~AA~rc-------------R~rKk~~~~~Le~~v~~L~~~n 39 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-------------RNRRRELTDTLQAETDQLEDEK 39 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666554 1233466666777776666654
No 21
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=37.84 E-value=41 Score=30.35 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhcCCC----CCcchhhHHHHHHHHHHHH
Q 012178 273 RIAERMKALQELVPNA----NKTDKASMLDEIIDYVKFL 307 (469)
Q Consensus 273 KINerf~aLrsLVP~~----~K~DKASIL~eAIdYIK~L 307 (469)
.|...|..|+++||.. .+.-|-.||.+|.++++-|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 5889999999999955 4677999999999998866
No 22
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=26.61 E-value=65 Score=24.72 Aligned_cols=24 Identities=13% Similarity=0.477 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCC
Q 012178 265 IAERLRRERIAERMKALQELVPNA 288 (469)
Q Consensus 265 ~aERkRReKINerf~aLrsLVP~~ 288 (469)
.++|.+|...++-+.+|+.+.|..
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~l 26 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDM 26 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHcccC
Confidence 478899999999999999999955
No 23
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=20.60 E-value=53 Score=29.17 Aligned_cols=31 Identities=10% Similarity=0.149 Sum_probs=23.7
Q ss_pred HhhcCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 012178 282 QELVPNANKTDKASMLDEIIDYVKFLQLQVK 312 (469)
Q Consensus 282 rsLVP~~~K~DKASIL~eAIdYIK~LQ~qVk 312 (469)
..++|+-...-....++.+++||+.++++++
T Consensus 200 ~~v~pgHg~~~~~~~~~~~~~~l~~~~~~~~ 230 (232)
T 1a7t_A 200 RYVVPGHGNYGGTELIEHTKQIVNQYIESTS 230 (232)
T ss_dssp SEEEESSSCCBCTHHHHHHHHHHHHHHHHHC
T ss_pred CEEECCCCCcccHHHHHHHHHHHHHHHHHhc
Confidence 4567766554455789999999999998775
Done!