BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012180
(469 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 100/398 (25%), Positives = 170/398 (42%), Gaps = 32/398 (8%)
Query: 65 VLKKAMAEALVSYYALAGEVVYNYDGEPELLCNNRGVDFVEAYAEVELRDLNLYNPDESI 124
VLK A++ ALV +Y +AG + + DG E+ CN GV FVEA ++ + D + P +
Sbjct: 60 VLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLEL 119
Query: 125 EXXXXXXXXXXXXXS-----VQATELKCGGIVVACTLDHRIADAYSTNMFLVSWAEIAQS 179
S +Q T KCGG+ + + H AD +S F+ SW+++A+
Sbjct: 120 RRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARG 179
Query: 180 KPMSVLPSFRRSILNPRRPLCIDHAFDDM-YLPISSLXXXXXXXXXXXXXXXXXLISRIY 238
+++ P R++L R P F + Y P +L I+
Sbjct: 180 LDVTLPPFIDRTLLRARDP--PQPQFQHIEYQPPPALAVSPQTAASDSVPETAV---SIF 234
Query: 239 YIKSEQLNELQLLASSD--ECKRTKLESFSAYLWKMVALSGNDNDGSGTRISKMGVVVDG 296
+ EQ++ L+ + D + E + ++W+ + GT K+ + DG
Sbjct: 235 KLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGT---KLYIATDG 291
Query: 297 RTRLSSSKGDHVNKSISMDSYFGNVLSVPFGGQKVNELIEKPLSWVAKRVHDFLENAVTK 356
R RL S YFGNV+ +L KP+ + A ++HD L +
Sbjct: 292 RARLRPSL---------PPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALAR-MDN 341
Query: 357 DHFLGLIDWVEAHRPDPAISKICATGSKDGPAFVVSSGQRFPVSKVDFGWGKPVFGSYHF 416
D+ +D++E A+ + T P ++S R P+ DFGWG+P+F
Sbjct: 342 DYLRSALDYLELQPDLKALVRGAHTFKX--PNLGITSWVRLPIHDADFGWGRPIFMG--- 396
Query: 417 PWG-SDAGYVMPMPSPAHNSDWVVYMHLSEKQLDLIET 453
P G + G +PSP ++ V + L + + L ++
Sbjct: 397 PGGIAYEGLSFILPSPTNDGSMSVAISLQGEHMKLFQS 434
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 100/398 (25%), Positives = 172/398 (43%), Gaps = 32/398 (8%)
Query: 65 VLKKAMAEALVSYYALAGEVVYNYDGEPELLCNNRGVDFVEAYAEVELRDLNLYNPDESI 124
VLK A++ ALV +Y +AG + + DG E+ CN GV FVEA ++ + D + P +
Sbjct: 57 VLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLEL 116
Query: 125 EXXXXXXXXXXXXXS-----VQATELKCGGIVVACTLDHRIADAYSTNMFLVSWAEIAQS 179
S +Q T KCGG+ + + H AD +S F+ SW+++A+
Sbjct: 117 RRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARG 176
Query: 180 KPMSVLPSFRRSILNPRRPLCIDHAFDDM-YLPISSLXXXXXXXXXXXXXXXXXLISRIY 238
+++ P R++L R P F + Y P +L I+
Sbjct: 177 LDVTLPPFIDRTLLRARDP--PQPQFQHIEYQPPPALKVSPQTAKSDSVPETAV---SIF 231
Query: 239 YIKSEQLNELQLLASSD--ECKRTKLESFSAYLWKMVALSGNDNDGSGTRISKMGVVVDG 296
+ EQ++ L+ + D + E + ++W+ + GT K+ + DG
Sbjct: 232 KLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGT---KLYIATDG 288
Query: 297 RTRLSSSKGDHVNKSISMDSYFGNVLSVPFGGQKVNELIEKPLSWVAKRVHDFLENAVTK 356
R RL S YFGNV+ +L KP+ + A ++HD L +
Sbjct: 289 RARLRPSLP---------PGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALAR-MDN 338
Query: 357 DHFLGLIDWVEAHRPDPAISKICATGSKDGPAFVVSSGQRFPVSKVDFGWGKPVFGSYHF 416
D+ +D++E +PD + + + P ++S R P+ DFGWG+P+F
Sbjct: 339 DYLRSALDYLEL-QPD-LKALVRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMG--- 393
Query: 417 PWG-SDAGYVMPMPSPAHNSDWVVYMHLSEKQLDLIET 453
P G + G +PSP ++ V + L + + L ++
Sbjct: 394 PGGIAYEGLSFILPSPTNDGSMSVAISLQGEHMKLFQS 431
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 98/397 (24%), Positives = 168/397 (42%), Gaps = 30/397 (7%)
Query: 65 VLKKAMAEALVSYYALAGEVVYNYDGEPELLCNNRGVDFVEAYAEVELRDLNLYNPDESI 124
VLK A++ ALV +Y +AG + + DG E+ CN GV FVEA ++ + D + P +
Sbjct: 60 VLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLEL 119
Query: 125 EXXXXXXXXXXXXXS-----VQATELKCGGIVVACTLDHRIADAYSTNMFLVSWAEIAQS 179
S +Q T K GG+ + + H AD +S F+ SW+++A+
Sbjct: 120 RRLIPAVDYSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMARG 179
Query: 180 KPMSVLPSFRRSILNPRRPLCIDHAFDDMYLPISSLXXXXXXXXXXXXXXXXXLISRIYY 239
+++ P R++L R P + Y P +L I+
Sbjct: 180 LDVTLPPFIDRTLLRARDPPQPQFQHIE-YQPPPALAVSPQTAASDSVPETAV---SIFK 235
Query: 240 IKSEQLNELQLLASSD--ECKRTKLESFSAYLWKMVALSGNDNDGSGTRISKMGVVVDGR 297
+ EQ++ L+ + D + E + ++W+ + GT K+ + DGR
Sbjct: 236 LTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGT---KLYIATDGR 292
Query: 298 TRLSSSKGDHVNKSISMDSYFGNVLSVPFGGQKVNELIEKPLSWVAKRVHDFLENAVTKD 357
RL S YFGNV+ +L KP+ + A ++HD L + D
Sbjct: 293 ARLRPSL---------PPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALAR-MDND 342
Query: 358 HFLGLIDWVEAHRPDPAISKICATGSKDGPAFVVSSGQRFPVSKVDFGWGKPVFGSYHFP 417
+ +D++E A+ + T P ++S R P+ DFGWG+P+F P
Sbjct: 343 YLRSALDYLELQPDLKALVRGAHTFKX--PNLGITSWVRLPIHDADFGWGRPIFMG---P 397
Query: 418 WG-SDAGYVMPMPSPAHNSDWVVYMHLSEKQLDLIET 453
G + G +PSP ++ V + L + + L ++
Sbjct: 398 GGIAYEGLSFILPSPTNDGSMSVAISLQGEHMKLFQS 434
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 15/139 (10%)
Query: 60 GSTVDVLKKAMAEALVSYYALAGEVVYNYDGEPELLCNNRGVDFVEAYAE---------- 109
T LK+++++ L +Y LAG + N + CN+ GV FVEA +
Sbjct: 57 AQTSQHLKQSLSKVLTHFYPLAGRINVNSSVD----CNDSGVPFVEARVQAQLSQAIQNV 112
Query: 110 VELRDLNLYNPDESIEXXXXXXXXXXXXXSVQATELKCGGIVVACTLDHRIADAYSTNMF 169
VEL L+ Y P + +V+ + +CGG + L H+IAD S F
Sbjct: 113 VELEKLDQYLPSAAYPGGKIEVNEDVPL-AVKISFFECGGTAIGVNLSHKIADVLSLATF 171
Query: 170 LVSWAEIAQSKPMSVLPSF 188
L +W + + VLP+F
Sbjct: 172 LNAWTATCRGETEIVLPNF 190
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 89/394 (22%), Positives = 139/394 (35%), Gaps = 65/394 (16%)
Query: 45 FFCYKKP-TAADFGSFGSTVDVLKKAMAEALVSYYALAGE-VVYNYDGEPELLCNNRGVD 102
F Y+ P T + F + V +K +++ L +Y G+ VVY + +C G
Sbjct: 45 LFFYELPITRSQFTE--TVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDS 102
Query: 103 FVEAYAE--VELRDLNLYNPDESI----------EXXXXXXXXXXXXXSVQATELKCGGI 150
+AE ++L +L +P E SVQ T GI
Sbjct: 103 VAVTFAECNLDLNELTGNHPRNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGI 162
Query: 151 VVACTLDHRIADAYSTNMFLVSWAEIAQSKPMSVLPSFRRSILNPRRPL---CIDH-AFD 206
+ T H + DA + FL +W IA+S SF + N RPL I + D
Sbjct: 163 AIGITNHHCLGDASTRFCFLKAWTSIARSGNND--ESF---LANGTRPLYDRIIKYPMLD 217
Query: 207 DMYLPISSLXXXXXXXXXXXXXXXXXLISRIYYIKSEQLNELQLLASSDECKRTKLESFS 266
+ YL + + + + + +N+L+ + + SF+
Sbjct: 218 EAYLKRAKVESFNEDYVTQSLAGPSDKLRATFILTRAVINQLKDRVLAQLPTLEYVSSFT 277
Query: 267 ---AYLWKMVALSGNDNDGSGTRISKMGVVVDGRTRLSSSKGDHVNKSISMDSYFGNVLS 323
AY+W +A S ND ++ G +D R R+ K +YFGN +
Sbjct: 278 VACAYIWSCIAKSRND------KLQLFGFPIDRRARM---------KPPIPTAYFGNCVG 322
Query: 324 VPFGGQKVNELIEK-----PLSWVAKRVHDFL---ENAVTKDHFLGLIDWVEAHRPDPAI 375
K N LI K + + +H L ++ V KD D V P
Sbjct: 323 GCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTDYKDGVLKDDMESFNDLVSEGMPTTMT 382
Query: 376 SKICATGSKDGPAFVVSSGQRFPVSKVDFGWGKP 409
VS + +DFGWGKP
Sbjct: 383 --------------WVSGTPKLRFYDMDFGWGKP 402
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 85/378 (22%), Positives = 128/378 (33%), Gaps = 64/378 (16%)
Query: 61 STVDVLKKAMAEALVSYYALAGE-VVYNYDGEPELLCNNRGVDFVEAYAEVELRDLNLYN 119
+ V +K +++ L +Y G+ VVY + +C G +AE L DLN
Sbjct: 60 TVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNL-DLNELT 118
Query: 120 PDESI-------------EXXXXXXXXXXXXXSVQATELKCGGIVVACTLDHRIADAYST 166
+ E SVQ T GI + T H + DA +
Sbjct: 119 GNHPRNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTR 178
Query: 167 NMFLVSWAEIAQSKPMSVLPSFRRSILNPRRPL---CIDH-AFDDMYLPISSLXXXXXXX 222
FL +W IA+S SF + N RPL I + D+ YL + +
Sbjct: 179 FCFLKAWTSIARSGNND--ESF---LANGTRPLYDRIIKYPXLDEAYLKRAKVESFNEDY 233
Query: 223 XXXXXXXXXXLISRIYYIKSEQLNELQLLASSDECKRTKLESFS---AYLWKMVALSGND 279
+ + + +N+L+ + + SF+ AY+W +A S ND
Sbjct: 234 VTQSLAGPSDKLRATFILTRAVINQLKDRVLAQLPTLEYVSSFTVACAYIWSCIAKSRND 293
Query: 280 NDGSGTRISKMGVVVDGRTRLSSSKGDHVNKSISMDSYFGNVLSVPFGGQKVNELIEK-- 337
++ G +D R R K +YFGN + K N LI K
Sbjct: 294 ------KLQLFGFPIDRRAR---------XKPPIPTAYFGNCVGGCAAIAKTNLLIGKEG 338
Query: 338 ---PLSWVAKRVHDFL---ENAVTKDHFLGLIDWVEAHRPDPAISKICATGSKDGPAFVV 391
+ + +H L ++ V KD D V P V
Sbjct: 339 FITAAKLIGENLHKTLTDYKDGVLKDDXESFNDLVSEGXPTTXT--------------WV 384
Query: 392 SSGQRFPVSKVDFGWGKP 409
S + DFGWGKP
Sbjct: 385 SGTPKLRFYDXDFGWGKP 402
>pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV5|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV6|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
pdb|3KV6|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
Length = 488
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 38/113 (33%)
Query: 320 NVLSVPFGGQKVNELIEKPLSWVAKRVHDFLENAVTKDHFLGLIDWVEAHRPD------P 373
NV+S+ F K++EL+E P +AK+ + WVE + PD P
Sbjct: 224 NVISLEFSDTKMSELVEVPD--IAKK-----------------LSWVENYWPDDSVFPKP 264
Query: 374 AISKICATGSKDGPAFVVSSGQRFPVSKVDFGWGKPVFGSYHFPWGSDAGYVM 426
+ K C G +D + +DFG G V+ YH WG Y++
Sbjct: 265 FVQKYCLMGVQDS----------YTDFHIDFG-GTSVW--YHVLWGEKIFYLI 304
>pdb|3KV9|A Chain A, Structure Of Kiaa1718 Jumonji Domain
pdb|3KVA|A Chain A, Structure Of Kiaa1718 Jumonji Domain In Complex With
Alpha- Ketoglutarate
pdb|3KVB|A Chain A, Structure Of Kiaa1718 Jumonji Domain In Complex With N-
Oxalylglycine
pdb|3U78|A Chain A, E67-2 Selectively Inhibits Kiaa1718, A Human Histone H3
Lysine 9 Jumonji Demethylase
Length = 397
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 38/113 (33%)
Query: 320 NVLSVPFGGQKVNELIEKPLSWVAKRVHDFLENAVTKDHFLGLIDWVEAHRPD------P 373
NV+S+ F K++EL+E P +AK+ + WVE + PD P
Sbjct: 133 NVISLEFSDTKMSELVEVPD--IAKK-----------------LSWVENYWPDDSVFPKP 173
Query: 374 AISKICATGSKDGPAFVVSSGQRFPVSKVDFGWGKPVFGSYHFPWGSDAGYVM 426
+ K C G +D + +DFG G V+ YH WG Y++
Sbjct: 174 FVQKYCLMGVQDS----------YTDFHIDFG-GTSVW--YHVLWGEKIFYLI 213
>pdb|1GSQ|A Chain A, Three-Dimensional Structure, Catalytic Properties And
Evolution Of A Sigma Class Glutathione Transferase From
Squid, A Progenitor Of The Lens-Crystallins Of
Cephalopods
pdb|2GSQ|A Chain A, Glutathione S-Transferase From Squid Digestive Gland
Complexed With S- (3-Iodobenzyl)glutathione
Length = 202
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 281 DGSGTRISKMGVV---------VDGRTRLSSSKGDHVNKSISMDSYFGNVLSVPFGGQKV 331
D GT++S+ + +DG+T L + D + +++ F +V+ + F +
Sbjct: 54 DIDGTKMSQSMCIARHLAREFGLDGKTSLEKYRVDEITETLQ--DIFNDVVKIKFAPEAA 111
Query: 332 NELIEKPLSWVAKRVHDFLE 351
E +++ KR+ FLE
Sbjct: 112 KEAVQQNYEKSCKRLAPFLE 131
>pdb|2XZM|Y Chain Y, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|Y Chain Y, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 293
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 263 ESFSAYLWKMVALSGNDNDGSGTRISKMGVVVDGRTRLSSSKG 305
+ F Y++K+ GND DG K GV+V GR RL S+G
Sbjct: 43 DEFKGYVFKIAG--GNDKDGFPM---KQGVMVRGRVRLLLSEG 80
>pdb|1JDW|A Chain A, Crystal Structure And Mechanism Of L-Arginine: Glycine
Amidinotransferase: A Mitochondrial Enzyme Involved In
Creatine Biosynthesis
pdb|2JDW|A Chain A, Crystal Structure And Mechanism Of L-Arginine: Glycine
Amidinotransferase: A Mitochondrial Enzyme Involved In
Creatine Biosynthesis
pdb|3JDW|A Chain A, Crystal Structure And Mechanism Of L-Arginine: Glycine
Amidinotransferase: A Mitochondrial Enzyme Involved In
Creatine Biosynthesis
Length = 423
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 332 NELIEKPLSWVAKRVHDFLENAVTKDHFLGLIDWVEAHRP 371
NE+IE P++W ++ ++ KD+F W A +P
Sbjct: 177 NEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKP 216
>pdb|4JDW|A Chain A, Crystal Structure And Mechanism Of L-Arginine: Glycine
Amidinotransferase: A Mitochondrial Enzyme Involved In
Creatine Biosynthesis
Length = 423
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 332 NELIEKPLSWVAKRVHDFLENAVTKDHFLGLIDWVEAHRP 371
NE+IE P++W ++ ++ KD+F W A +P
Sbjct: 177 NEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKP 216
>pdb|1JDX|A Chain A, Crystal Structure Of Human L-Arginine:glycine
Amidinotransferase In Complex With L-Norvaline
pdb|5JDW|A Chain A, Crystal Structure Of Human L-Arginine:glycine
Amidinotransferase In Complex With Glycine
pdb|6JDW|A Chain A, Crystal Structure Of Human L-Arginine:glycine
Amidinotransferase In Complex With Gamma-Amino Butyric
Acid
pdb|7JDW|A Chain A, Crystal Structure Of Human L-Arginine:glycine
Amidinotransferase In Complex With Delta-Amino Valeric
Acid
pdb|8JDW|A Chain A, Crystal Structure Of Human L-Arginine:glycine
Amidinotransferase In Complex With L-Alanine
pdb|9JDW|A Chain A, Crystal Structure Of Human L-Arginine:glycine
Amidinotransferase In Complex With Alpha-Amino Butyric
Acid
Length = 386
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 332 NELIEKPLSWVAKRVHDFLENAVTKDHFLGLIDWVEAHRP 371
NE+IE P++W ++ ++ KD+F W A +P
Sbjct: 140 NEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKP 179
>pdb|2JDX|A Chain A, Crystal Structure Of Human L-Arginine:glycine
Amidinotransferase, Deletionmutant Atdeltam302
Length = 385
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 332 NELIEKPLSWVAKRVHDFLENAVTKDHFLGLIDWVEAHRP 371
NE+IE P++W ++ ++ KD+F W A +P
Sbjct: 140 NEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKP 179
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,101,827
Number of Sequences: 62578
Number of extensions: 521586
Number of successful extensions: 1164
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1137
Number of HSP's gapped (non-prelim): 20
length of query: 469
length of database: 14,973,337
effective HSP length: 102
effective length of query: 367
effective length of database: 8,590,381
effective search space: 3152669827
effective search space used: 3152669827
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)