Query 012181
Match_columns 469
No_of_seqs 197 out of 1416
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 23:54:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012181.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012181hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 6E-127 1E-131 984.9 39.1 421 27-448 34-512 (524)
2 PLN02998 beta-glucosidase 100.0 6E-124 1E-128 987.9 42.0 443 3-445 4-488 (497)
3 PLN02849 beta-glucosidase 100.0 9E-124 2E-128 987.4 42.9 451 6-458 6-495 (503)
4 PLN02814 beta-glucosidase 100.0 1E-122 2E-127 979.9 41.8 423 25-449 23-487 (504)
5 COG2723 BglB Beta-glucosidase/ 100.0 6E-120 1E-124 927.2 35.0 405 28-446 2-454 (460)
6 TIGR01233 lacG 6-phospho-beta- 100.0 3E-118 7E-123 941.0 40.3 403 28-448 2-467 (467)
7 PRK13511 6-phospho-beta-galact 100.0 4E-118 9E-123 942.0 40.1 402 28-447 3-468 (469)
8 PRK09593 arb 6-phospho-beta-gl 100.0 1E-117 3E-122 938.3 40.2 408 27-448 3-476 (478)
9 PRK09589 celA 6-phospho-beta-g 100.0 2E-117 5E-122 935.9 40.5 406 29-448 3-475 (476)
10 PRK15014 6-phospho-beta-glucos 100.0 3E-116 6E-121 926.7 41.3 408 27-448 3-476 (477)
11 PF00232 Glyco_hydro_1: Glycos 100.0 1E-117 2E-122 939.2 26.7 404 28-447 3-455 (455)
12 PRK09852 cryptic 6-phospho-bet 100.0 7E-116 2E-120 922.1 40.7 406 29-448 3-472 (474)
13 TIGR03356 BGL beta-galactosida 100.0 9E-112 2E-116 885.0 37.2 392 30-438 1-427 (427)
14 smart00633 Glyco_10 Glycosyl h 99.4 3.5E-11 7.6E-16 118.3 18.9 247 101-437 1-253 (254)
15 PF02449 Glyco_hydro_42: Beta- 99.3 6E-12 1.3E-16 130.5 9.2 109 80-192 10-141 (374)
16 PF00150 Cellulase: Cellulase 99.2 3.6E-11 7.7E-16 118.4 9.8 109 81-192 22-134 (281)
17 PF00331 Glyco_hydro_10: Glyco 98.8 6.8E-08 1.5E-12 98.2 13.9 296 31-440 7-318 (320)
18 PF01229 Glyco_hydro_39: Glyco 98.6 4.4E-07 9.5E-12 97.4 14.1 106 82-192 41-168 (486)
19 COG1874 LacA Beta-galactosidas 98.4 3.9E-07 8.4E-12 99.7 8.0 117 82-202 32-175 (673)
20 PRK10150 beta-D-glucuronidase; 98.4 2.1E-05 4.5E-10 86.8 21.3 249 81-444 314-594 (604)
21 COG3693 XynA Beta-1,4-xylanase 98.2 7.1E-05 1.5E-09 74.6 16.8 271 99-444 65-343 (345)
22 PF07745 Glyco_hydro_53: Glyco 98.0 0.00026 5.7E-09 72.1 16.9 102 83-191 27-137 (332)
23 COG2730 BglC Endoglucanase [Ca 97.9 3.8E-05 8.1E-10 80.8 9.3 109 83-191 76-193 (407)
24 COG3867 Arabinogalactan endo-1 97.7 0.0028 6.2E-08 62.5 17.0 134 29-190 34-182 (403)
25 PF01301 Glyco_hydro_35: Glyco 97.5 0.00044 9.5E-09 70.4 9.8 109 81-190 25-151 (319)
26 PLN03059 beta-galactosidase; P 97.0 0.008 1.7E-07 67.6 12.8 108 81-190 60-188 (840)
27 PLN02161 beta-amylase 96.9 0.0032 6.9E-08 66.5 8.4 111 76-191 113-262 (531)
28 PF01373 Glyco_hydro_14: Glyco 96.9 0.0019 4.1E-08 66.8 6.7 106 79-190 15-151 (402)
29 PLN02803 beta-amylase 96.9 0.0037 8.1E-08 66.3 8.6 107 80-191 107-252 (548)
30 PLN00197 beta-amylase; Provisi 96.9 0.0039 8.5E-08 66.4 8.7 106 81-191 128-272 (573)
31 PLN02801 beta-amylase 96.7 0.0082 1.8E-07 63.5 9.8 106 81-190 38-182 (517)
32 PF13204 DUF4038: Protein of u 96.7 0.01 2.2E-07 59.7 9.8 100 85-189 35-156 (289)
33 PLN02705 beta-amylase 96.6 0.012 2.5E-07 63.4 9.7 107 80-190 268-413 (681)
34 PLN02905 beta-amylase 96.5 0.012 2.6E-07 63.5 9.6 110 77-190 283-431 (702)
35 PF02836 Glyco_hydro_2_C: Glyc 96.1 0.036 7.8E-07 55.6 10.1 92 79-189 35-132 (298)
36 PF14587 Glyco_hydr_30_2: O-Gl 96.1 0.016 3.4E-07 59.9 7.4 101 90-191 57-185 (384)
37 PF14488 DUF4434: Domain of un 95.0 0.14 3.1E-06 47.1 8.9 102 80-190 20-131 (166)
38 KOG0496 Beta-galactosidase [Ca 95.0 0.14 3.1E-06 55.9 9.9 109 81-190 50-176 (649)
39 PRK09525 lacZ beta-D-galactosi 93.0 0.39 8.4E-06 56.5 9.3 93 79-190 370-464 (1027)
40 COG3250 LacZ Beta-galactosidas 92.1 0.92 2E-05 51.8 10.5 91 76-191 317-409 (808)
41 PRK10340 ebgA cryptic beta-D-g 91.3 0.77 1.7E-05 54.0 9.2 89 79-189 354-450 (1021)
42 PF07488 Glyco_hydro_67M: Glyc 88.9 3.6 7.8E-05 41.3 10.2 87 79-178 56-150 (328)
43 PF03198 Glyco_hydro_72: Gluca 87.5 3.2 6.8E-05 42.0 8.9 89 81-188 54-144 (314)
44 COG3664 XynB Beta-xylosidase [ 86.9 1.4 3E-05 45.9 6.1 99 89-192 14-117 (428)
45 PF05089 NAGLU: Alpha-N-acetyl 86.6 5.4 0.00012 40.8 10.1 110 79-189 18-184 (333)
46 KOG2233 Alpha-N-acetylglucosam 86.3 3.8 8.1E-05 43.6 8.9 111 79-189 77-248 (666)
47 COG3934 Endo-beta-mannanase [C 84.5 0.48 1E-05 50.1 1.5 108 83-191 29-150 (587)
48 smart00642 Aamy Alpha-amylase 80.9 4.3 9.4E-05 37.2 6.2 62 79-140 18-90 (166)
49 COG1501 Alpha-glucosidases, fa 77.6 27 0.00058 40.0 12.4 100 92-194 294-421 (772)
50 PLN00196 alpha-amylase; Provis 77.3 5.9 0.00013 42.1 6.7 65 79-143 43-117 (428)
51 PF02638 DUF187: Glycosyl hydr 73.8 14 0.00029 37.6 8.0 96 82-177 21-154 (311)
52 cd06592 GH31_glucosidase_KIAA1 73.3 17 0.00037 36.6 8.7 104 83-190 33-167 (303)
53 cd06598 GH31_transferase_CtsZ 69.2 29 0.00063 35.2 9.3 107 83-192 27-168 (317)
54 cd06603 GH31_GANC_GANAB_alpha 68.0 26 0.00055 35.9 8.7 109 83-193 27-167 (339)
55 PF12891 Glyco_hydro_44: Glyco 67.7 31 0.00068 33.7 8.6 75 119-193 23-139 (239)
56 cd06591 GH31_xylosidase_XylS X 66.5 32 0.00069 34.9 8.9 106 83-192 27-163 (319)
57 cd07939 DRE_TIM_NifV Streptomy 64.7 19 0.0004 35.4 6.6 78 83-174 72-150 (259)
58 cd06602 GH31_MGAM_SI_GAA This 64.5 34 0.00073 35.1 8.8 106 83-191 27-168 (339)
59 TIGR02629 L_rham_iso_rhiz L-rh 63.4 33 0.00072 36.1 8.4 119 27-184 42-171 (412)
60 cd07945 DRE_TIM_CMS Leptospira 62.8 21 0.00044 35.7 6.6 81 83-174 77-158 (280)
61 PLN02361 alpha-amylase 62.1 17 0.00037 38.3 6.1 64 77-140 26-96 (401)
62 cd06601 GH31_lyase_GLase GLase 61.9 30 0.00065 35.5 7.7 105 86-194 30-139 (332)
63 PRK05799 coproporphyrinogen II 61.4 18 0.0004 37.4 6.2 94 83-192 99-195 (374)
64 cd06593 GH31_xylosidase_YicI Y 60.6 50 0.0011 33.2 9.1 105 83-190 27-161 (308)
65 cd06600 GH31_MGAM-like This fa 60.3 51 0.0011 33.5 9.1 107 83-192 27-164 (317)
66 PRK05402 glycogen branching en 60.0 52 0.0011 37.5 10.0 94 82-183 267-401 (726)
67 TIGR02635 RhaI_grampos L-rhamn 60.0 58 0.0013 34.1 9.5 84 83-183 43-136 (378)
68 TIGR02402 trehalose_TreZ malto 59.8 54 0.0012 36.0 9.7 59 79-143 110-185 (542)
69 PF00128 Alpha-amylase: Alpha 59.2 20 0.00044 35.0 5.8 58 83-141 7-73 (316)
70 cd03174 DRE_TIM_metallolyase D 59.0 26 0.00057 33.9 6.6 80 83-174 77-157 (265)
71 PRK12313 glycogen branching en 58.6 48 0.001 37.1 9.3 97 79-183 169-306 (633)
72 COG1523 PulA Type II secretory 57.7 20 0.00043 40.5 5.9 55 86-140 206-285 (697)
73 PF12876 Cellulase-like: Sugar 57.6 6.4 0.00014 32.0 1.6 19 172-190 1-22 (88)
74 TIGR00433 bioB biotin syntheta 57.3 27 0.00058 34.7 6.4 54 83-139 123-177 (296)
75 TIGR02090 LEU1_arch isopropylm 56.8 28 0.00061 36.1 6.6 60 82-141 73-133 (363)
76 PRK14041 oxaloacetate decarbox 56.4 37 0.0008 36.6 7.6 56 78-146 88-148 (467)
77 cd07948 DRE_TIM_HCS Saccharomy 56.3 38 0.00082 33.5 7.1 59 83-141 74-133 (262)
78 PRK05692 hydroxymethylglutaryl 56.2 38 0.00082 34.0 7.2 85 82-175 81-167 (287)
79 TIGR03581 EF_0839 conserved hy 55.6 26 0.00056 33.7 5.5 75 79-165 134-230 (236)
80 cd06604 GH31_glucosidase_II_Ma 55.2 62 0.0013 33.1 8.8 105 83-192 27-163 (339)
81 PRK03705 glycogen debranching 55.1 24 0.00053 39.6 6.2 54 86-140 185-262 (658)
82 PRK14040 oxaloacetate decarbox 54.3 41 0.00088 37.4 7.6 98 78-192 90-212 (593)
83 PF14871 GHL6: Hypothetical gl 53.7 55 0.0012 28.9 7.0 54 84-141 4-65 (132)
84 PRK09936 hypothetical protein; 53.5 1.4E+02 0.0031 30.1 10.5 61 83-151 41-101 (296)
85 TIGR02403 trehalose_treC alpha 52.6 26 0.00056 38.4 5.8 56 79-140 26-95 (543)
86 PLN02746 hydroxymethylglutaryl 52.4 48 0.001 34.3 7.4 84 82-174 123-208 (347)
87 TIGR01515 branching_enzym alph 51.9 97 0.0021 34.5 10.2 94 82-183 158-292 (613)
88 PRK12858 tagatose 1,6-diphosph 51.4 59 0.0013 33.5 7.8 52 86-140 112-163 (340)
89 PF03659 Glyco_hydro_71: Glyco 51.1 60 0.0013 34.1 8.0 86 80-191 17-102 (386)
90 cd07944 DRE_TIM_HOA_like 4-hyd 51.1 55 0.0012 32.3 7.4 65 83-174 85-149 (266)
91 PRK10933 trehalose-6-phosphate 51.0 31 0.00068 37.9 6.1 56 79-140 32-101 (551)
92 PLN02923 xylose isomerase 50.9 1.5E+02 0.0031 31.6 10.4 27 118-145 121-147 (478)
93 PRK09441 cytoplasmic alpha-amy 50.9 31 0.00066 37.2 6.0 65 79-143 21-106 (479)
94 PF10566 Glyco_hydro_97: Glyco 50.2 40 0.00086 33.7 6.1 87 56-143 9-96 (273)
95 cd06543 GH18_PF-ChiA-like PF-C 49.1 94 0.002 31.3 8.8 78 87-177 19-104 (294)
96 PF03511 Fanconi_A: Fanconi an 49.0 14 0.0003 28.2 2.0 39 104-144 19-57 (64)
97 cd07937 DRE_TIM_PC_TC_5S Pyruv 48.6 91 0.002 30.9 8.5 69 82-175 93-161 (275)
98 PRK12581 oxaloacetate decarbox 47.5 61 0.0013 34.9 7.4 97 30-146 49-158 (468)
99 PRK14510 putative bifunctional 47.4 27 0.00059 42.1 5.3 53 84-140 191-267 (1221)
100 PRK12399 tagatose 1,6-diphosph 47.2 93 0.002 31.8 8.2 90 85-183 110-202 (324)
101 COG0821 gcpE 1-hydroxy-2-methy 47.1 1.3E+02 0.0029 30.9 9.2 85 74-172 78-162 (361)
102 PRK04161 tagatose 1,6-diphosph 47.0 95 0.0021 31.8 8.3 91 84-183 111-204 (329)
103 PRK11858 aksA trans-homoaconit 46.8 51 0.0011 34.4 6.7 58 83-140 78-136 (378)
104 TIGR02660 nifV_homocitr homoci 46.1 47 0.001 34.4 6.3 80 83-177 75-155 (365)
105 PRK08599 coproporphyrinogen II 45.7 93 0.002 32.2 8.4 94 83-192 100-196 (377)
106 PLN02784 alpha-amylase 43.8 49 0.0011 38.2 6.3 66 77-142 518-592 (894)
107 PRK09505 malS alpha-amylase; R 43.4 59 0.0013 36.8 6.9 63 82-144 232-318 (683)
108 TIGR02456 treS_nterm trehalose 43.2 41 0.0009 36.8 5.6 53 82-140 30-96 (539)
109 PRK12331 oxaloacetate decarbox 42.5 93 0.002 33.4 7.9 51 83-146 99-149 (448)
110 cd06599 GH31_glycosidase_Aec37 42.1 74 0.0016 32.2 6.9 108 83-191 32-171 (317)
111 COG3534 AbfA Alpha-L-arabinofu 42.0 68 0.0015 34.2 6.5 87 83-190 51-175 (501)
112 PRK10785 maltodextrin glucosid 41.9 52 0.0011 36.5 6.2 52 83-140 182-246 (598)
113 PRK09058 coproporphyrinogen II 41.3 86 0.0019 33.5 7.5 104 83-202 163-269 (449)
114 TIGR01210 conserved hypothetic 40.5 1.4E+02 0.0029 30.3 8.5 109 83-204 117-229 (313)
115 PF02836 Glyco_hydro_2_C: Glyc 39.4 29 0.00062 34.6 3.4 47 390-443 247-294 (298)
116 PRK14706 glycogen branching en 39.3 1.4E+02 0.003 33.6 9.0 90 86-177 174-299 (639)
117 TIGR01232 lacD tagatose 1,6-di 38.8 1.2E+02 0.0026 31.0 7.6 90 85-183 111-203 (325)
118 PLN02389 biotin synthase 38.5 84 0.0018 32.9 6.7 57 81-140 176-233 (379)
119 cd07940 DRE_TIM_IPMS 2-isoprop 38.3 84 0.0018 30.9 6.4 77 83-174 72-154 (268)
120 cd07943 DRE_TIM_HOA 4-hydroxy- 38.2 2.2E+02 0.0047 27.9 9.4 46 83-141 88-133 (263)
121 TIGR00539 hemN_rel putative ox 37.5 1.5E+02 0.0033 30.4 8.5 91 83-190 100-194 (360)
122 cd02803 OYE_like_FMN_family Ol 37.5 4.1E+02 0.009 26.6 11.5 39 105-143 62-100 (327)
123 PRK14507 putative bifunctional 37.4 91 0.002 38.9 7.6 60 79-144 757-833 (1693)
124 TIGR03217 4OH_2_O_val_ald 4-hy 37.3 2.8E+02 0.006 28.4 10.2 46 83-141 90-135 (333)
125 PRK10426 alpha-glucosidase; Pr 36.8 2.3E+02 0.005 31.8 10.2 106 82-189 223-364 (635)
126 PRK14705 glycogen branching en 36.6 2.1E+02 0.0045 34.8 10.2 89 83-177 768-897 (1224)
127 KOG1065 Maltase glucoamylase a 35.9 1.5E+02 0.0032 34.0 8.4 104 83-193 314-453 (805)
128 PF01055 Glyco_hydro_31: Glyco 35.9 1.4E+02 0.0029 31.6 8.0 106 83-192 46-184 (441)
129 smart00729 Elp3 Elongator prot 35.8 2.1E+02 0.0044 25.7 8.4 55 82-139 99-156 (216)
130 TIGR00612 ispG_gcpE 1-hydroxy- 35.4 2.2E+02 0.0047 29.4 8.8 87 72-172 74-160 (346)
131 PRK14511 maltooligosyl trehalo 35.2 76 0.0017 36.9 6.2 58 80-143 20-94 (879)
132 cd07938 DRE_TIM_HMGL 3-hydroxy 35.0 1.2E+02 0.0025 30.2 6.8 83 83-174 76-160 (274)
133 TIGR02401 trehalose_TreY malto 34.9 83 0.0018 36.4 6.4 59 80-144 16-91 (825)
134 TIGR01108 oadA oxaloacetate de 34.9 1.4E+02 0.003 33.2 8.0 92 83-191 94-205 (582)
135 PF08139 LPAM_1: Prokaryotic m 34.5 32 0.00068 21.5 1.7 17 2-18 7-23 (25)
136 PRK00366 ispG 4-hydroxy-3-meth 34.0 1.8E+02 0.0039 30.2 8.0 73 89-172 97-169 (360)
137 TIGR03234 OH-pyruv-isom hydrox 33.9 1.1E+02 0.0024 29.4 6.5 65 79-146 83-150 (254)
138 PLN02447 1,4-alpha-glucan-bran 33.5 78 0.0017 36.2 5.8 88 84-177 255-383 (758)
139 PRK12568 glycogen branching en 33.3 77 0.0017 36.1 5.8 97 79-183 268-405 (730)
140 PF04914 DltD_C: DltD C-termin 33.1 1.2E+02 0.0026 26.8 5.8 60 116-179 32-91 (130)
141 cd06545 GH18_3CO4_chitinase Th 32.9 96 0.0021 30.1 5.8 73 100-177 27-99 (253)
142 cd04733 OYE_like_2_FMN Old yel 32.9 5.4E+02 0.012 26.1 11.8 39 104-142 63-104 (338)
143 cd02742 GH20_hexosaminidase Be 32.9 98 0.0021 31.1 6.0 62 82-149 18-98 (303)
144 TIGR02100 glgX_debranch glycog 32.6 98 0.0021 35.1 6.5 55 86-140 190-265 (688)
145 COG3589 Uncharacterized conser 32.5 81 0.0018 32.4 5.2 70 85-168 21-90 (360)
146 cd06568 GH20_SpHex_like A subg 32.3 1E+02 0.0022 31.6 6.0 63 82-150 20-102 (329)
147 PF02065 Melibiase: Melibiase; 31.6 6.4E+02 0.014 26.6 14.8 132 83-246 61-227 (394)
148 PRK07379 coproporphyrinogen II 31.4 2E+02 0.0043 30.2 8.3 102 83-201 115-220 (400)
149 cd07941 DRE_TIM_LeuA3 Desulfob 30.8 70 0.0015 31.7 4.5 81 83-174 81-162 (273)
150 PF07071 DUF1341: Protein of u 30.5 1.7E+02 0.0036 28.0 6.5 67 80-175 135-201 (218)
151 PRK10081 entericidin B membran 30.3 53 0.0012 23.8 2.5 23 1-23 1-23 (48)
152 cd06595 GH31_xylosidase_XylS-l 28.6 1.5E+02 0.0033 29.5 6.6 108 83-192 28-163 (292)
153 PF04055 Radical_SAM: Radical 28.3 1.3E+02 0.0028 25.8 5.4 53 83-137 90-144 (166)
154 cd07947 DRE_TIM_Re_CS Clostrid 28.0 1.9E+02 0.0041 28.9 7.0 58 83-140 77-135 (279)
155 cd06565 GH20_GcnA-like Glycosy 27.8 1.8E+02 0.0039 29.2 7.0 61 82-149 19-86 (301)
156 PRK10658 putative alpha-glucos 27.6 3.2E+02 0.007 30.9 9.5 101 86-189 289-419 (665)
157 PRK07094 biotin synthase; Prov 27.5 1.1E+02 0.0024 30.8 5.4 57 81-140 127-185 (323)
158 PRK09856 fructoselysine 3-epim 27.5 68 0.0015 31.2 3.8 62 78-140 88-149 (275)
159 cd06589 GH31 The enzymes of gl 27.4 1.8E+02 0.004 28.4 6.8 89 83-192 27-120 (265)
160 cd06594 GH31_glucosidase_YihQ 27.3 4.5E+02 0.0097 26.6 9.8 75 114-190 65-168 (317)
161 PRK12677 xylose isomerase; Pro 27.3 5E+02 0.011 27.1 10.3 71 82-159 33-104 (384)
162 PF11153 DUF2931: Protein of u 27.3 62 0.0013 30.8 3.3 11 32-42 26-36 (216)
163 PRK01060 endonuclease IV; Prov 27.0 3.4E+02 0.0073 26.4 8.7 51 82-137 14-64 (281)
164 PF00682 HMGL-like: HMGL-like 26.9 1.3E+02 0.0029 28.6 5.6 79 83-175 66-149 (237)
165 cd06542 GH18_EndoS-like Endo-b 26.6 1.7E+02 0.0037 28.2 6.4 55 119-177 50-104 (255)
166 TIGR00542 hxl6Piso_put hexulos 26.4 1E+02 0.0022 30.2 4.8 61 79-141 93-154 (279)
167 COG2100 Predicted Fe-S oxidore 25.4 2.3E+02 0.0049 29.2 6.8 79 79-173 200-284 (414)
168 PRK06256 biotin synthase; Vali 24.7 1.2E+02 0.0025 30.8 5.0 56 81-139 150-206 (336)
169 cd06562 GH20_HexA_HexB-like Be 24.7 1.3E+02 0.0028 30.9 5.3 62 82-149 20-96 (348)
170 COG3661 AguA Alpha-glucuronida 24.6 5.9E+02 0.013 27.4 9.8 88 80-176 183-277 (684)
171 PF01261 AP_endonuc_2: Xylose 24.5 88 0.0019 28.4 3.7 62 79-140 70-132 (213)
172 PLN02960 alpha-amylase 24.3 1.9E+02 0.0041 33.8 6.8 94 78-177 414-549 (897)
173 PRK13398 3-deoxy-7-phosphohept 24.2 2.5E+02 0.0054 27.9 7.0 71 76-149 37-107 (266)
174 cd02874 GH18_CFLE_spore_hydrol 24.0 2.4E+02 0.0053 28.1 7.1 84 86-177 16-103 (313)
175 PTZ00445 p36-lilke protein; Pr 24.0 1.4E+02 0.0031 28.7 5.0 58 84-141 33-99 (219)
176 PF08194 DIM: DIM protein; In 23.9 59 0.0013 22.2 1.7 16 2-17 1-16 (36)
177 PF11790 Glyco_hydro_cc: Glyco 23.9 2.7E+02 0.0058 26.9 7.1 79 83-185 93-171 (239)
178 PF10566 Glyco_hydro_97: Glyco 23.8 1.4E+02 0.0031 29.8 5.2 60 83-153 109-168 (273)
179 PRK05660 HemN family oxidoredu 23.8 3.7E+02 0.008 27.9 8.6 93 83-191 107-202 (378)
180 COG0366 AmyA Glycosidases [Car 23.7 1.2E+02 0.0025 32.2 4.9 54 84-143 33-102 (505)
181 cd06570 GH20_chitobiase-like_1 23.3 2.3E+02 0.0051 28.7 6.8 62 82-149 20-94 (311)
182 PRK05628 coproporphyrinogen II 23.1 4.3E+02 0.0094 27.2 8.9 95 83-193 108-205 (375)
183 PRK08195 4-hyroxy-2-oxovalerat 23.1 1.5E+02 0.0032 30.5 5.3 67 83-177 91-157 (337)
184 PTZ00445 p36-lilke protein; Pr 22.9 1.5E+02 0.0032 28.6 4.8 64 120-190 29-103 (219)
185 cd00927 Cyt_c_Oxidase_VIc Cyto 22.7 47 0.001 26.1 1.2 20 75-94 45-66 (70)
186 PRK09249 coproporphyrinogen II 22.7 3E+02 0.0066 29.3 7.8 78 82-175 150-230 (453)
187 PRK08208 coproporphyrinogen II 22.6 3.4E+02 0.0073 28.7 8.1 86 83-184 141-229 (430)
188 PF01456 Mucin: Mucin-like gly 22.5 69 0.0015 28.2 2.5 26 1-26 1-26 (143)
189 PRK09282 pyruvate carboxylase 21.9 3E+02 0.0066 30.6 7.8 93 82-191 98-210 (592)
190 TIGR01211 ELP3 histone acetylt 21.9 3.3E+02 0.0071 29.9 7.9 107 83-205 206-317 (522)
191 PLN02925 4-hydroxy-3-methylbut 21.5 2.3E+02 0.005 32.1 6.6 53 121-174 211-263 (733)
192 COG5016 Pyruvate/oxaloacetate 21.3 3.5E+02 0.0076 28.7 7.5 73 78-175 91-168 (472)
193 PF13812 PPR_3: Pentatricopept 21.3 95 0.0021 19.2 2.4 15 122-136 20-34 (34)
194 PRK05904 coproporphyrinogen II 21.1 4.7E+02 0.01 26.9 8.7 93 83-191 103-198 (353)
195 PF07172 GRP: Glycine rich pro 21.1 67 0.0015 26.8 1.9 14 10-23 10-23 (95)
196 PRK13210 putative L-xylulose 5 21.0 6.1E+02 0.013 24.5 9.2 53 82-138 18-70 (284)
197 PF01071 GARS_A: Phosphoribosy 20.9 1E+02 0.0022 29.1 3.4 47 367-416 138-190 (194)
198 TIGR01212 radical SAM protein, 20.8 3.8E+02 0.0082 26.9 7.7 106 83-204 123-234 (302)
199 TIGR03471 HpnJ hopanoid biosyn 20.8 1.7E+02 0.0037 31.2 5.5 56 83-141 287-344 (472)
200 cd02871 GH18_chitinase_D-like 20.7 2.3E+02 0.005 28.5 6.1 50 121-177 61-110 (312)
201 PRK08508 biotin synthase; Prov 20.4 2E+02 0.0043 28.5 5.5 56 82-140 101-157 (279)
202 PF04028 DUF374: Domain of unk 20.4 3E+02 0.0064 21.8 5.4 41 86-140 26-66 (74)
203 PRK09997 hydroxypyruvate isome 20.4 2.7E+02 0.0058 26.9 6.4 62 82-146 87-151 (258)
204 TIGR00538 hemN oxygen-independ 20.3 3.6E+02 0.0077 28.8 7.8 77 83-175 151-230 (455)
205 TIGR00542 hxl6Piso_put hexulos 20.2 6.4E+02 0.014 24.5 9.1 54 80-137 16-69 (279)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6e-127 Score=984.90 Aligned_cols=421 Identities=57% Similarity=1.038 Sum_probs=387.9
Q ss_pred cCCCCCCCeeeeecccccccCccCCCCCCCcccceeccc-C-cccC--CCcccCccccChHHHHHHHHHcCCCEEEeccc
Q 012181 27 KNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA-G-NVHG--TGDIACDGYHKYKEDVKLMADTGLDAYRFSIS 102 (469)
Q Consensus 27 ~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~-~-~~~~--~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~ 102 (469)
+..||++|+||+||||||+||+.+++||++|+||.|+|. + ++.+ ++++|||+||||+|||+|||+||+++|||||+
T Consensus 34 r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRFSIs 113 (524)
T KOG0626|consen 34 RADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRFSIS 113 (524)
T ss_pred ccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEEEee
Confidence 668999999999999999999999999999999999998 4 5544 78999999999999999999999999999999
Q ss_pred ccccccCCC--CCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHHHhCCCc
Q 012181 103 WSRLIPNGR--GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRV 180 (469)
Q Consensus 103 W~ri~P~~~--g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v 180 (469)
||||+|.|. +.+|++||++|+++|++|+++||+|+|||+|||+|++|+++||||+|++++++|.+||+.||++|||+|
T Consensus 114 WSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fGDrV 193 (524)
T KOG0626|consen 114 WSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFGDRV 193 (524)
T ss_pred hHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhcccc
Confidence 999999987 679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEccCCccccccccccCCCCCCCCCC-ccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHccCCCcccEEEEeecc
Q 012181 181 SYWTTVNEPNAFANLGYDYGIAPPQRCSS-INHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVNIFAF 259 (469)
Q Consensus 181 ~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~-~~~~~~~~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~~~~~kIGi~~~~~ 259 (469)
|+|+|||||++++..||..|..|||+|+. ..+|..|+++++.|+|.||||+|||+||++||+.++..|+|+|||++...
T Consensus 194 K~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~~~~ 273 (524)
T KOG0626|consen 194 KHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIALSAR 273 (524)
T ss_pred eeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEEeee
Confidence 99999999999999999999999999986 45799999999999999999999999999999999988999999999999
Q ss_pred ccccCCCCHHHHHHHHHHHHHhhcccccceeccccchhHHhhhcCCCCCCCHhHHhhhcCCCCEEEeccCccceeccCCC
Q 012181 260 GLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLPAFSDRESKQVKGSADFLGVINYYIVYVKDNPS 339 (469)
Q Consensus 260 ~~~P~~~~~~D~~Aa~~~~~~~~~~fldpl~~G~yP~~~~~~l~~~lp~~t~~d~~~ikg~~DFiGiNYY~~~~v~~~~~ 339 (469)
|++|.+++++|.+||+|+.+|..+|+++|++.|+||+.|++.+++|||.||++|.+++||+.||+|||||++.++++...
T Consensus 274 w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~~~~ 353 (524)
T KOG0626|consen 274 WFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKHLKP 353 (524)
T ss_pred eeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhccCC
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999987543
Q ss_pred CCCCCCCCCCCCCc------------------e----------------------eeee-cCCCCC---------CCccC
Q 012181 340 SLNKKLRDWNADSA------------------T----------------------EIFC-QNTPRR---------SSLKD 369 (469)
Q Consensus 340 ~~~~~~~~~~~d~~------------------~----------------------~i~I-ENG~~~---------~~~~D 369 (469)
........+.+|.+ | .++| |||+.+ ...+|
T Consensus 354 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~d~~~~~~~~~~~l~D 433 (524)
T KOG0626|consen 354 PPDPSQPGWSTDSGVDWTLEGNDLIGPKAGSDWLPVYPWGLRKLLNYIKDKYGNPPIYITENGFDDLDGGTKSLEVALKD 433 (524)
T ss_pred CCCCCCcccccccceeeeecccccccccccccceeeccHHHHHHHHHHHhhcCCCcEEEEeCCCCcccccccchhhhhcc
Confidence 11111111111111 1 1227 999932 13589
Q ss_pred hhhHHHHHHHHHHHHHHHH-cCCCeEEEEeeeccccccccCCccceeeeEEEcCCCCCCCccccchHHHHHHHHhcCCCC
Q 012181 370 ISRVKYLHAYIGSVLDAVR-NGSNIRGYFMWSFLDVFELMDGYESSYGLYYVDRDDPDLKRYPKLSAHWYSQFLKGRSLS 448 (469)
Q Consensus 370 ~~Ri~yl~~hl~~v~~Ai~-dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~~R~~K~S~~~y~~ii~~~~~~ 448 (469)
..||+|++.||++|++||. +||||+|||+|||||||||..||+.||||++|||+|+ ++|+||.|++||+++++.++.+
T Consensus 434 ~~Ri~Y~~~~L~~~~kAi~~dgvnv~GYf~WSLmDnfEw~~Gy~~RFGlyyVDf~d~-l~R~pK~Sa~wy~~fl~~~~~~ 512 (524)
T KOG0626|consen 434 TKRIEYLQNHLQAVLKAIKEDGVNVKGYFVWSLLDNFEWLDGYKVRFGLYYVDFKDP-LKRYPKLSAKWYKKFLKGKVKP 512 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCceeeEEEeEcccchhhhcCcccccccEEEeCCCC-CcCCchhHHHHHHHHHcCCCCC
Confidence 9999999999999999997 8999999999999999999999999999999999996 9999999999999999988753
No 2
>PLN02998 beta-glucosidase
Probab=100.00 E-value=5.5e-124 Score=987.93 Aligned_cols=443 Identities=64% Similarity=1.139 Sum_probs=391.0
Q ss_pred hhHHHHHHHHHHHHhhhhhccccccCCCCCCCeeeeecccccccCccCCCCCCCcccceecccCccc-CCCcccCccccC
Q 012181 3 LRLSFLLMYLLNLATSALTAVEYSKNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHAGNVH-GTGDIACDGYHK 81 (469)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~-~~~~~a~d~y~r 81 (469)
++-|+|.+-+|+|++++..+......+||++|+||+|||||||||+++++|||+|+||.|.+.+... .++++|||||||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~a~D~Yhr 83 (497)
T PLN02998 4 LSNSLMFLPLLALALTAVSSLKYSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAHAGHSGVAAGNVACDQYHK 83 (497)
T ss_pred hhcchhHHHHHHhcccccccccCccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccccCcCCCCCCcccccHHHh
Confidence 3445565556666665555555567789999999999999999999999999999999998854222 277899999999
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhh
Q 012181 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTI 161 (469)
Q Consensus 82 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~ 161 (469)
|+|||++||+||+|+|||||+||||+|++.|.+|++||++|+++|++|+++||+|+|||+|||+|+||+++||||+|+++
T Consensus 84 y~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~ 163 (497)
T PLN02998 84 YKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEI 163 (497)
T ss_pred hHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchH
Confidence 99999999999999999999999999998788999999999999999999999999999999999999998999999999
Q ss_pred HHHHHHHHHHHHHHhCCCceEEEEccCCccccccccccCCCCCCCCCC--ccccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 012181 162 VKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIAPPQRCSS--INHCSRGNSSTEPYITVHHVLLAHASVARL 239 (469)
Q Consensus 162 ~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~--~~~~~~~~~~~~~~~~~~~~l~Aha~a~~~ 239 (469)
+++|++||+.|+++|||+|++|+|||||++++..||..|.+|||.+.. ...|..+++.++.++++||+++||++||++
T Consensus 164 v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~ 243 (497)
T PLN02998 164 VRDFTAYADTCFKEFGDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATIL 243 (497)
T ss_pred HHHHHHHHHHHHHHhcCcCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999996441 012555555567899999999999999999
Q ss_pred HHHHccCCCcccEEEEeeccccccCCCCHHHHHHHHHHHHHhhcccccceeccccchhHHhhhcCCCCCCCHhHHhhhcC
Q 012181 240 YRKKYQDKQRGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLPAFSDRESKQVKG 319 (469)
Q Consensus 240 ~~~~~~~~~~~kIGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldpl~~G~yP~~~~~~l~~~lp~~t~~d~~~ikg 319 (469)
+|++++..|+++||++++..+++|.+++++|++||++.+++.++||+||+++|+||+.|++.+++++|.||++|+++|++
T Consensus 244 ~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~ 323 (497)
T PLN02998 244 YKQQYKYKQHGSVGISVYTYGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKG 323 (497)
T ss_pred HHHhhccCCCCcEEEEEeCCeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcC
Confidence 99986655679999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred CCCEEEeccCccceeccCCCCCCC--C-----------CCCCCC-CCceeee---------------------e-cCCCC
Q 012181 320 SADFLGVINYYIVYVKDNPSSLNK--K-----------LRDWNA-DSATEIF---------------------C-QNTPR 363 (469)
Q Consensus 320 ~~DFiGiNYY~~~~v~~~~~~~~~--~-----------~~~~~~-d~~~~i~---------------------I-ENG~~ 363 (469)
++||+|||||++.+|+.......+ . ..+..+ +++|+++ | |||+.
T Consensus 324 ~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~ 403 (497)
T PLN02998 324 AFDFVGVINYMALYVKDNSSSLKPNLQDFNTDIAVEMTLVGNTSIENEYANTPWSLQQILLYVKETYGNPPVYILENGQM 403 (497)
T ss_pred CCCEEEEchhcCcccccCCCcCCCCccccccccccccccCCCcCCCCCCEEChHHHHHHHHHHHHHcCCCCEEEeCCCCc
Confidence 999999999999998752211000 0 000011 3556543 7 99994
Q ss_pred ---CCCccChhhHHHHHHHHHHHHHHHHcCCCeEEEEeeeccccccccCCccceeeeEEEcCCCCCCCccccchHHHHHH
Q 012181 364 ---RSSLKDISRVKYLHAYIGSVLDAVRNGSNIRGYFMWSFLDVFELMDGYESSYGLYYVDRDDPDLKRYPKLSAHWYSQ 440 (469)
Q Consensus 364 ---~~~~~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~~R~~K~S~~~y~~ 440 (469)
+++++|++||+||++||.+|++||+|||||+||++|||+|||||.+||++|||||+||++|++++|+||+|++||++
T Consensus 404 ~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLv~VD~~~~~~~R~pK~S~~wy~~ 483 (497)
T PLN02998 404 TPHSSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDVFELFGGYERSFGLLYVDFKDPSLKRSPKLSAHWYSS 483 (497)
T ss_pred cCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999985589999999999999
Q ss_pred HHhcC
Q 012181 441 FLKGR 445 (469)
Q Consensus 441 ii~~~ 445 (469)
+|+++
T Consensus 484 ii~~~ 488 (497)
T PLN02998 484 FLKGT 488 (497)
T ss_pred HHhcc
Confidence 99987
No 3
>PLN02849 beta-glucosidase
Probab=100.00 E-value=9.4e-124 Score=987.42 Aligned_cols=451 Identities=59% Similarity=1.035 Sum_probs=393.0
Q ss_pred HHHHHHHHHHHhhhhhccccccCCCCCCCeeeeecccccccCccCCCCCCCcccceecccCcccCCCcccCccccChHHH
Q 012181 6 SFLLMYLLNLATSALTAVEYSKNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHAGNVHGTGDIACDGYHKYKED 85 (469)
Q Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~a~d~y~ry~eD 85 (469)
|+.-..+|+..+|..........+||++|+||+|||||||||+++++||++|+||.+.+.+. ..++++||||||||+||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~~-~~~~~~a~D~YhrY~eD 84 (503)
T PLN02849 6 SLFTIFLLLALSSGKCSSDYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSRN-MSNGDIACDGYHKYKED 84 (503)
T ss_pred HHHHHHHHHhcccccccCCCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccCC-CCCCCccccHHHhHHHH
Confidence 33333334444444444445677899999999999999999999999999999999987521 13788999999999999
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhhHHHH
Q 012181 86 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDF 165 (469)
Q Consensus 86 i~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f 165 (469)
|+|||+||+|+|||||+||||+|++.|.+|++||++|+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|
T Consensus 85 I~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~~F 164 (503)
T PLN02849 85 VKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIKDF 164 (503)
T ss_pred HHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHHHH
Confidence 99999999999999999999999987899999999999999999999999999999999999999989999999999999
Q ss_pred HHHHHHHHHHhCCCceEEEEccCCccccccccccCCCCCCCCCC-ccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHc
Q 012181 166 TAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIAPPQRCSS-INHCSRGNSSTEPYITVHHVLLAHASVARLYRKKY 244 (469)
Q Consensus 166 ~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~-~~~~~~~~~~~~~~~~~~~~l~Aha~a~~~~~~~~ 244 (469)
++||+.|+++|||+|++|+|||||++++..||..|.+|||.+.. ...|..+++.++.+++.||+++||++||+++|+++
T Consensus 165 ~~YA~~~f~~fgDrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~ 244 (503)
T PLN02849 165 TAYADVCFREFGNHVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKY 244 (503)
T ss_pred HHHHHHHHHHhcCcCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999996431 01354445556789999999999999999999975
Q ss_pred cCCCcccEEEEeeccccccCCCCHHHHHHHHHHHHHhhcccccceeccccchhHHhhhcCCCCCCCHhHHhhhcCCCCEE
Q 012181 245 QDKQRGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLPAFSDRESKQVKGSADFL 324 (469)
Q Consensus 245 ~~~~~~kIGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldpl~~G~yP~~~~~~l~~~lp~~t~~d~~~ikg~~DFi 324 (469)
+..++++||++++..+++|.+++|+|++||++.+++.++||+||+++|+||+.|++.+++++|.++++|++++++++|||
T Consensus 245 ~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFl 324 (503)
T PLN02849 245 KDMQGGSIGFSLFALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSSDFI 324 (503)
T ss_pred cCCCCCEEEEEEECceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEE
Confidence 44467999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred EeccCccceeccCCCC-----CC---C---CCCCCCCCCceeee---------------------e-cCCCC-----CCC
Q 012181 325 GVINYYIVYVKDNPSS-----LN---K---KLRDWNADSATEIF---------------------C-QNTPR-----RSS 366 (469)
Q Consensus 325 GiNYY~~~~v~~~~~~-----~~---~---~~~~~~~d~~~~i~---------------------I-ENG~~-----~~~ 366 (469)
|||||++.+|+..... .. . .+..+.++++|+++ | |||+. ++.
T Consensus 325 GiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~rY~~pPi~ITENG~~~~d~~~~~ 404 (503)
T PLN02849 325 GVIHYLAASVTNIKIKPSLSGNPDFYSDMGVSLGKFSAFEYAVAPWAMESVLEYIKQSYGNPPVYILENGTPMKQDLQLQ 404 (503)
T ss_pred EEeccchhhcccCCCCCCCCCCCccccccCCCCCccCCCCCeEChHHHHHHHHHHHHhcCCCCEEEeCCCCCccCCCCCc
Confidence 9999999998752110 00 0 01123567888764 7 99994 346
Q ss_pred ccChhhHHHHHHHHHHHHHHHHcCCCeEEEEeeeccccccccCCccceeeeEEEcCCCCCCCccccchHHHHHHHHhcCC
Q 012181 367 LKDISRVKYLHAYIGSVLDAVRNGSNIRGYFMWSFLDVFELMDGYESSYGLYYVDRDDPDLKRYPKLSAHWYSQFLKGRS 446 (469)
Q Consensus 367 ~~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~~R~~K~S~~~y~~ii~~~~ 446 (469)
++|++||+||++||++|++||+|||||+||++|||+|||||.+||++|||||+||++|++++|+||+|++||+++|++|+
T Consensus 405 v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLi~VD~~~~~~~R~pK~S~~wy~~ii~~~~ 484 (503)
T PLN02849 405 QKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDLYELLKGYEFSFGLYSVNFSDPHRKRSPKLSAHWYSAFLKGNS 484 (503)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHHHHHHhCC
Confidence 89999999999999999999999999999999999999999999999999999999985579999999999999999987
Q ss_pred CCCccccccccC
Q 012181 447 LSSDEDFALEKN 458 (469)
Q Consensus 447 ~~~~~~~~~~~~ 458 (469)
.. ++..++++.
T Consensus 485 ~~-~~~~~~~~~ 495 (503)
T PLN02849 485 TF-LGSQGITQL 495 (503)
T ss_pred CC-cccchhhhh
Confidence 43 234444433
No 4
>PLN02814 beta-glucosidase
Probab=100.00 E-value=9.7e-123 Score=979.91 Aligned_cols=423 Identities=59% Similarity=1.045 Sum_probs=380.5
Q ss_pred cccCCCCCCCeeeeecccccccCccCCCCCCCcccceecccCcccCCCcccCccccChHHHHHHHHHcCCCEEEeccccc
Q 012181 25 YSKNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHAGNVHGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISWS 104 (469)
Q Consensus 25 ~~~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~W~ 104 (469)
....+||++|+||+|||||||||+++++|||+|+||.+.+... ..++++||||||||+|||+|||+||+|+|||||+||
T Consensus 23 ~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~~~-~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSIsWs 101 (504)
T PLN02814 23 FTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHCYN-GGNGDIASDGYHKYKEDVKLMAEMGLESFRFSISWS 101 (504)
T ss_pred cccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeeccC-CCCCCccccHHHhhHHHHHHHHHcCCCEEEEeccHh
Confidence 4457799999999999999999999999999999999987411 137889999999999999999999999999999999
Q ss_pred ccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHHHhCCCceEEE
Q 012181 105 RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWT 184 (469)
Q Consensus 105 ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~ 184 (469)
||+|++.|.+|++||++|+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.|+++|||+|++|+
T Consensus 102 RI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~Wi 181 (504)
T PLN02814 102 RLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVKLWT 181 (504)
T ss_pred hcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCCEEE
Confidence 99999878999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred EccCCccccccccccCCCCCCCCCC--ccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHccCCCcccEEEEeeccccc
Q 012181 185 TVNEPNAFANLGYDYGIAPPQRCSS--INHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGLL 262 (469)
Q Consensus 185 t~NEp~~~~~~gy~~g~~~Pg~~~~--~~~~~~~~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~~~~~kIGi~~~~~~~~ 262 (469)
|||||++++..||..|.. ||.++. ...|..+++.++.++++||+++||++||+++|+++...|+++||++++..+++
T Consensus 182 T~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~~~~ 260 (504)
T PLN02814 182 TINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAFGLS 260 (504)
T ss_pred eccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCceee
Confidence 999999999999999885 885442 12354445556789999999999999999999986556779999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhhcccccceeccccchhHHhhhcCCCCCCCHhHHhhhcCCCCEEEeccCccceeccCCCCC-
Q 012181 263 PLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLPAFSDRESKQVKGSADFLGVINYYIVYVKDNPSSL- 341 (469)
Q Consensus 263 P~~~~~~D~~Aa~~~~~~~~~~fldpl~~G~yP~~~~~~l~~~lp~~t~~d~~~ikg~~DFiGiNYY~~~~v~~~~~~~- 341 (469)
|++++|+|++||++.+++.++||+||+++|+||+.|++.+++++|.|+++|+++|++++||||||||++.+|+..+...
T Consensus 261 P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~~~~~ 340 (504)
T PLN02814 261 PYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRPAPSI 340 (504)
T ss_pred cCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccCCCCCc
Confidence 9999999999999999999999999999999999999999989999999999999999999999999999997422100
Q ss_pred ------C--------CCCCCCCCCCceeee---------------------e-cCCCC---CCCccChhhHHHHHHHHHH
Q 012181 342 ------N--------KKLRDWNADSATEIF---------------------C-QNTPR---RSSLKDISRVKYLHAYIGS 382 (469)
Q Consensus 342 ------~--------~~~~~~~~d~~~~i~---------------------I-ENG~~---~~~~~D~~Ri~yl~~hl~~ 382 (469)
. ..+....+++||+++ | |||+. +++++|++||+||++||++
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~gWei~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~ 420 (504)
T PLN02814 341 FPSMNEGFFTDMGAYIISAGNSSFFEFDATPWGLEGILEHIKQSYNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGA 420 (504)
T ss_pred ccccCCCcccccccccCCCCCcCCCCCeECcHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHH
Confidence 0 001112467888764 7 99994 4679999999999999999
Q ss_pred HHHHHHcCCCeEEEEeeeccccccccCCccceeeeEEEcCCCCCCCccccchHHHHHHHHhcCCCCC
Q 012181 383 VLDAVRNGSNIRGYFMWSFLDVFELMDGYESSYGLYYVDRDDPDLKRYPKLSAHWYSQFLKGRSLSS 449 (469)
Q Consensus 383 v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~~R~~K~S~~~y~~ii~~~~~~~ 449 (469)
|++||+|||||+||++|||+|||||.+||++|||||+||++|++++|+||+|++||+++|+++..+.
T Consensus 421 l~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~~RfGLvyVD~~~~~~~R~pK~S~~wy~~~i~~~~~~~ 487 (504)
T PLN02814 421 VLNAIKNGSDTRGYFVWSMIDLYELLGGYTTSFGMYYVNFSDPGRKRSPKLSASWYTGFLNGTIDVA 487 (504)
T ss_pred HHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceeeecHHHHHHHHHhcCCChh
Confidence 9999999999999999999999999999999999999999985579999999999999999886654
No 5
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.3e-120 Score=927.20 Aligned_cols=405 Identities=39% Similarity=0.713 Sum_probs=371.3
Q ss_pred CCCCCCCeeeeecccccccCccCCCCCCCcccceeccc---CcccC--CCcccCccccChHHHHHHHHHcCCCEEEeccc
Q 012181 28 NDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA---GNVHG--TGDIACDGYHKYKEDVKLMADTGLDAYRFSIS 102 (469)
Q Consensus 28 ~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~---~~~~~--~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~ 102 (469)
.+||++|+||+||||+|+||++++||||+|+||.|.+. +++.. ++++||||||||+|||+|||+||+|+||+||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 57999999999999999999999999999999999993 34432 78999999999999999999999999999999
Q ss_pred ccccccCCCC-CCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHHHhCCCce
Q 012181 103 WSRLIPNGRG-PVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVS 181 (469)
Q Consensus 103 W~ri~P~~~g-~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~ 181 (469)
||||+|++++ ++|++||++|+++||+|+++||+|+|||+|||+|+||+++||||.|++++++|++||+.||++|||+|+
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 9999999865 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCccccccccccCCCCCCCCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHccCCCcccEEEEeecccc
Q 012181 182 YWTTVNEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGL 261 (469)
Q Consensus 182 ~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~~~~~kIGi~~~~~~~ 261 (469)
+|+||||||+++..||+.|.+||+..+. +.++||+||+++|||+|++++|+..+. .+||++++..+.
T Consensus 162 ~W~TFNE~n~~~~~~y~~~~~~p~~~~~----------~~~~qa~hh~~lA~A~avk~~~~~~~~---~kIG~~~~~~p~ 228 (460)
T COG2723 162 YWFTFNEPNVVVELGYLYGGHPPGIVDP----------KAAYQVAHHMLLAHALAVKAIKKINPK---GKVGIILNLTPA 228 (460)
T ss_pred EEEEecchhhhhcccccccccCCCccCH----------HHHHHHHHHHHHHHHHHHHHHHhhCCc---CceEEEeccCcC
Confidence 9999999999999999999999997664 688999999999999999999998654 389999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHhhcccccceeccccchhHHhhhcCC--CCCCCHhHHhhhc-CCCCEEEeccCc-cceeccC
Q 012181 262 LPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSR--LPAFSDRESKQVK-GSADFLGVINYY-IVYVKDN 337 (469)
Q Consensus 262 ~P~~~~~~D~~Aa~~~~~~~~~~fldpl~~G~yP~~~~~~l~~~--lp~~t~~d~~~ik-g~~DFiGiNYY~-~~~v~~~ 337 (469)
||.+++|+|+.||+..+++.|.+|+||+++|+||..+.+.+.+. +|.++++|+++|+ +++||||||||+ +.+++..
T Consensus 229 YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~~ 308 (460)
T COG2723 229 YPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAAE 308 (460)
T ss_pred CCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeecc
Confidence 99999999999999999999999999999999999999998776 7999999999999 579999999999 4444433
Q ss_pred CCC-C----------CCCCCCCCCCCceeee--------------------e-cCCC-----C-CCCccChhhHHHHHHH
Q 012181 338 PSS-L----------NKKLRDWNADSATEIF--------------------C-QNTP-----R-RSSLKDISRVKYLHAY 379 (469)
Q Consensus 338 ~~~-~----------~~~~~~~~~d~~~~i~--------------------I-ENG~-----~-~~~~~D~~Ri~yl~~h 379 (469)
+.. . ...+....+||||+|+ | |||+ . .+.|+|++||+||++|
T Consensus 309 ~~~~~~~~~~~~~~~~~~p~~~~sdwGWeI~P~GL~~~l~~~~~rY~~p~fItENG~G~~d~~~~~~i~DdyRI~Yl~~H 388 (460)
T COG2723 309 PRYVSGYGPGGFFTSVPNPGLEVSDWGWEIYPKGLYDILEKLYERYGIPLFITENGLGVKDEVDFDGINDDYRIDYLKEH 388 (460)
T ss_pred CCcCCcccccccccccCCCCCcccCCCceeChHHHHHHHHHHHHHhCCCeEEecCCCCcccccccCCcCchHHHHHHHHH
Confidence 321 0 0112223579999986 7 9998 1 2348999999999999
Q ss_pred HHHHHHHHHcCCCeEEEEeeeccccccccCCccceeeeEEEcCCCCCCCccccchHHHHHHHHhcCC
Q 012181 380 IGSVLDAVRNGSNIRGYFMWSFLDVFELMDGYESSYGLYYVDRDDPDLKRYPKLSAHWYSQFLKGRS 446 (469)
Q Consensus 380 l~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~~R~~K~S~~~y~~ii~~~~ 446 (469)
|.+|++||+|||+|+||++||+|||+||.+||++|||||+||++|. ++|++|+|++|||++|++||
T Consensus 389 l~~v~~AI~dGv~v~GY~~Ws~iD~~sw~~gy~kRYGli~VD~~~~-~~R~~KkS~~WyK~vi~sng 454 (460)
T COG2723 389 LKAVKKAIEDGVDVRGYFAWSLIDNYSWANGYKKRYGLVYVDYDTD-LERTPKKSFYWYKEVIESNG 454 (460)
T ss_pred HHHHHHHHHcCCCcccceecccccccchhhccccccccEEEccccc-ceeeecCceeeeHHHHhcCC
Confidence 9999999999999999999999999999999999999999999993 69999999999999999999
No 6
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=3.2e-118 Score=940.98 Aligned_cols=403 Identities=33% Similarity=0.614 Sum_probs=363.0
Q ss_pred CCCCCCCeeeeecccccccCccCCCCCCCcccceeccc-CcccCCCcccCccccChHHHHHHHHHcCCCEEEeccccccc
Q 012181 28 NDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA-GNVHGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRL 106 (469)
Q Consensus 28 ~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~-~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~W~ri 106 (469)
.+||++|+||+|||||||||+++++|||+|+||.+.+. +.. ++++||||||||+|||+|||+||+++|||||+||||
T Consensus 2 ~~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~~~--~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI 79 (467)
T TIGR01233 2 KTLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYWY--TAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSRI 79 (467)
T ss_pred CCCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCCCC--CCCccCchhhhHHHHHHHHHHcCCCEEEEecchhhc
Confidence 46999999999999999999999999999999998875 332 678999999999999999999999999999999999
Q ss_pred ccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHHHhCCCceEEEEc
Q 012181 107 IPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTV 186 (469)
Q Consensus 107 ~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~ 186 (469)
+|++.|.+|++||++|+++|++|+++||+|+|||+|||+|+||+++ |||+|++++++|++||+.||++||+ |++|+||
T Consensus 80 ~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~WiT~ 157 (467)
T TIGR01233 80 FPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWTTF 157 (467)
T ss_pred cCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEe
Confidence 9998789999999999999999999999999999999999999985 9999999999999999999999998 9999999
Q ss_pred cCCccccccccccCCCCCCCCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHccCCCcccEEEEeeccccccCC-
Q 012181 187 NEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGLLPLT- 265 (469)
Q Consensus 187 NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~~~~~kIGi~~~~~~~~P~~- 265 (469)
|||++++..||+.|.+|||.+.. .++.++++||+++||++||+++|++. ++++||++++..+++|.+
T Consensus 158 NEP~~~~~~gy~~G~~~Pg~~~~---------~~~~~~a~hn~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~ 225 (467)
T TIGR01233 158 NEIGPIGDGQYLVGKFPPGIKYD---------LAKVFQSHHNMMVSHARAVKLYKDKG---YKGEIGVVHALPTKYPYDP 225 (467)
T ss_pred cchhhhhhccchhcccCCCccch---------hHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceeEECCC
Confidence 99999999999999999995321 13679999999999999999999974 459999999999999998
Q ss_pred CCHHHHHHHHHHHHHhhcccccceeccccchhHHhhhcC----C--CCCCCHhHHhhh---cCCCCEEEeccCccceecc
Q 012181 266 NSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGS----R--LPAFSDRESKQV---KGSADFLGVINYYIVYVKD 336 (469)
Q Consensus 266 ~~~~D~~Aa~~~~~~~~~~fldpl~~G~yP~~~~~~l~~----~--lp~~t~~d~~~i---kg~~DFiGiNYY~~~~v~~ 336 (469)
++++|++||++.+++.++||+||+++|+||+.|++.++. + +|.+|++|+++| ++++||||||||++.+|+.
T Consensus 226 ~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~~ 305 (467)
T TIGR01233 226 ENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQA 305 (467)
T ss_pred CCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeecc
Confidence 889999999999999999999999999999999987753 2 378999999999 5899999999999999975
Q ss_pred CCCC-----------------CC-----CCC-CCCCCCCceeee----------------------e-cCCCC------C
Q 012181 337 NPSS-----------------LN-----KKL-RDWNADSATEIF----------------------C-QNTPR------R 364 (469)
Q Consensus 337 ~~~~-----------------~~-----~~~-~~~~~d~~~~i~----------------------I-ENG~~------~ 364 (469)
.... .. ..+ ....+++||+++ | |||+. +
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG~~~~d~~~~ 385 (467)
T TIGR01233 306 FDGETEIIHNGKGEKGSSKYQIKGVGRRVAPDYVPRTDWDWIIYPEGLYDQIMRVKNDYPNYKKIYITENGLGYKDEFVD 385 (467)
T ss_pred CCCccccccCCccccCcccccCCCcccccCCCCCCcCCCCCeeChHHHHHHHHHHHHHcCCCCCEEEeCCCCCCCCCCCC
Confidence 2100 00 000 112366777653 7 99994 2
Q ss_pred CCccChhhHHHHHHHHHHHHHHHHcCCCeEEEEeeeccccccccCCccceeeeEEEcCCCCCCCccccchHHHHHHHHhc
Q 012181 365 SSLKDISRVKYLHAYIGSVLDAVRNGSNIRGYFMWSFLDVFELMDGYESSYGLYYVDRDDPDLKRYPKLSAHWYSQFLKG 444 (469)
Q Consensus 365 ~~~~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~~R~~K~S~~~y~~ii~~ 444 (469)
++++|++||+||++||++|++||+|||||+||++|||+|||||.+||++|||||+||++| ++|+||+|++|||++|++
T Consensus 386 g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~Ew~~Gy~~RfGLv~VD~~t--~~R~~K~S~~wy~~ii~~ 463 (467)
T TIGR01233 386 NTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFDT--QERYPKKSAHWYKKLAET 463 (467)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCC--CccccccHHHHHHHHHHh
Confidence 458999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCC
Q 012181 445 RSLS 448 (469)
Q Consensus 445 ~~~~ 448 (469)
|.++
T Consensus 464 ~~~~ 467 (467)
T TIGR01233 464 QVIE 467 (467)
T ss_pred cCCC
Confidence 8763
No 7
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=4.2e-118 Score=942.01 Aligned_cols=402 Identities=34% Similarity=0.638 Sum_probs=362.3
Q ss_pred CCCCCCCeeeeecccccccCccCCCCCCCcccceeccc-CcccCCCcccCccccChHHHHHHHHHcCCCEEEeccccccc
Q 012181 28 NDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA-GNVHGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRL 106 (469)
Q Consensus 28 ~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~-~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~W~ri 106 (469)
.+||++|+||+|||||||||++++||||+|+||.+.+. +++ ++++||||||||+|||+|||+||+++|||||+||||
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~~~--~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI 80 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENYWF--TPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWSRI 80 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCCCC--CCCcccchhhhhHHHHHHHHHhCCCEEEeeccHhhc
Confidence 46999999999999999999999999999999999875 433 789999999999999999999999999999999999
Q ss_pred ccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHHHhCCCceEEEEc
Q 012181 107 IPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTV 186 (469)
Q Consensus 107 ~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~ 186 (469)
+|++.|.+|++||++|+++|++|+++||+|+|||+|||+|+||+++ |||+|+++++.|++||+.|+++||| |++|+||
T Consensus 81 ~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~T~ 158 (469)
T PRK13511 81 FPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYWTTF 158 (469)
T ss_pred CcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEc
Confidence 9998788999999999999999999999999999999999999975 9999999999999999999999999 9999999
Q ss_pred cCCccccccccccCCCCCCCCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHccCCCcccEEEEeeccccccCC-
Q 012181 187 NEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGLLPLT- 265 (469)
Q Consensus 187 NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~~~~~kIGi~~~~~~~~P~~- 265 (469)
|||++++..||..|.+|||.+.. .+..++++||+++||++||+++|++. |+++||++++..+++|.+
T Consensus 159 NEP~~~~~~gy~~G~~~Pg~~~~---------~~~~~~~~hn~llAHa~A~~~~~~~~---~~g~IGi~~~~~~~~P~~~ 226 (469)
T PRK13511 159 NEIGPIGDGQYLVGKFPPGIKYD---------LAKVFQSHHNMMVAHARAVKLFKDKG---YKGEIGVVHALPTKYPIDP 226 (469)
T ss_pred cchhhhhhcchhhcccCCCCCcc---------HHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceEeeCCC
Confidence 99999999999999999996431 13679999999999999999999974 558999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcccccceeccccchhHHhhhc----C--CCCCCCHhHHhhhc---CCCCEEEeccCccceecc
Q 012181 266 NSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVG----S--RLPAFSDRESKQVK---GSADFLGVINYYIVYVKD 336 (469)
Q Consensus 266 ~~~~D~~Aa~~~~~~~~~~fldpl~~G~yP~~~~~~l~----~--~lp~~t~~d~~~ik---g~~DFiGiNYY~~~~v~~ 336 (469)
++++|++||++.+++.++||+||+++|+||+.|++.++ + ..|.||++|+++++ +++||||||||+|.+|+.
T Consensus 227 ~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~~ 306 (469)
T PRK13511 227 DNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDWMRA 306 (469)
T ss_pred CCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcceeec
Confidence 89999999999999999999999999999999998774 1 12489999999997 468999999999999875
Q ss_pred CCCCC----------------C------CCC-CCCCCCCceeee----------------------e-cCCCC-------
Q 012181 337 NPSSL----------------N------KKL-RDWNADSATEIF----------------------C-QNTPR------- 363 (469)
Q Consensus 337 ~~~~~----------------~------~~~-~~~~~d~~~~i~----------------------I-ENG~~------- 363 (469)
..... . ... ....++++|+++ | |||+.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~~~~d~~~~ 386 (469)
T PRK13511 307 YDGETEIIHNGTGEKGSSKYQLKGVGERVKPPDVPTTDWDWIIYPQGLYDQLMRIKKDYPNYKKIYITENGLGYKDEFVD 386 (469)
T ss_pred CCCccccccCCCCccccccccccCccccccCCCCCcCCCCCeECcHHHHHHHHHHHHHcCCCCCEEEecCCcCCCCCcCC
Confidence 21000 0 000 112356777643 7 99994
Q ss_pred CCCccChhhHHHHHHHHHHHHHHHHcCCCeEEEEeeeccccccccCCccceeeeEEEcCCCCCCCccccchHHHHHHHHh
Q 012181 364 RSSLKDISRVKYLHAYIGSVLDAVRNGSNIRGYFMWSFLDVFELMDGYESSYGLYYVDRDDPDLKRYPKLSAHWYSQFLK 443 (469)
Q Consensus 364 ~~~~~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~~R~~K~S~~~y~~ii~ 443 (469)
+++++|++||+||++||++|++||+|||||+||++|||+|||||.+||++|||||+||++| ++|+||+|++||+++|+
T Consensus 387 ~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~DnfEW~~Gy~~RfGl~~VD~~~--~~R~pK~S~~wy~~~i~ 464 (469)
T PRK13511 387 GKTVDDDKRIDYVKQHLEVISDAISDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFET--QERYPKKSAYWYKKLAE 464 (469)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccchhcCccCccceEEECCCc--CccccccHHHHHHHHHH
Confidence 2368899999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cCCC
Q 012181 444 GRSL 447 (469)
Q Consensus 444 ~~~~ 447 (469)
+|++
T Consensus 465 ~~~~ 468 (469)
T PRK13511 465 TKVI 468 (469)
T ss_pred hCCC
Confidence 9875
No 8
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1.2e-117 Score=938.27 Aligned_cols=408 Identities=30% Similarity=0.498 Sum_probs=362.0
Q ss_pred cCCCCCCCeeeeecccccccCccCCCCCCCcccceeccc-Ccc---c-------------CCCcccCccccChHHHHHHH
Q 012181 27 KNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA-GNV---H-------------GTGDIACDGYHKYKEDVKLM 89 (469)
Q Consensus 27 ~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~-~~~---~-------------~~~~~a~d~y~ry~eDi~l~ 89 (469)
..+||++|+||+|||||||||++++||||+|+||.|.+. +++ . .++++||||||||+|||+||
T Consensus 3 ~~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm 82 (478)
T PRK09593 3 KMPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALF 82 (478)
T ss_pred cccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHH
Confidence 457999999999999999999999999999999998874 333 1 14788999999999999999
Q ss_pred HHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhhHHHHHHH
Q 012181 90 ADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAY 168 (469)
Q Consensus 90 ~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~y 168 (469)
|+||+|+|||||+||||+|++. |.+|++||++|+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++|
T Consensus 83 ~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~Y 162 (478)
T PRK09593 83 AEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERL 162 (478)
T ss_pred HHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHH
Confidence 9999999999999999999974 569999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHhCCCceEEEEccCCccccccccc-cCC-CCCCCCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHccC
Q 012181 169 ADVCFRQFGDRVSYWTTVNEPNAFANLGYD-YGI-APPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQD 246 (469)
Q Consensus 169 a~~~~~~~gd~v~~w~t~NEp~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~ 246 (469)
|+.|+++|||+|++|+|||||++++..||. .|. +|||... .++.++|+||+++||++||+++|+..
T Consensus 163 A~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~----------~~~~~~a~h~~llAHa~A~~~~~~~~-- 230 (478)
T PRK09593 163 CRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENK----------EQVKYQAAHHELVASAIATKIAHEVD-- 230 (478)
T ss_pred HHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCch----------hhhHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 999999999999999999999999888876 444 3666422 24679999999999999999999864
Q ss_pred CCcccEEEEeeccccccCCCCHHHHHHHHHHHHHhhcccccceeccccchhHHhhhcC--CCCCCCHhHHhhhc-CCCCE
Q 012181 247 KQRGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGS--RLPAFSDRESKQVK-GSADF 323 (469)
Q Consensus 247 ~~~~kIGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldpl~~G~yP~~~~~~l~~--~lp~~t~~d~~~ik-g~~DF 323 (469)
|++|||++++..+++|.+++++|++||++.+ +.+.||+||+++|+||+.|++.+++ .+|.||++|+++|+ +++||
T Consensus 231 -~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~DF 308 (478)
T PRK09593 231 -PENKVGCMLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTVDF 308 (478)
T ss_pred -CCCeEEEEEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCE
Confidence 4589999999999999999999999999887 5588999999999999999999975 36889999999997 99999
Q ss_pred EEeccCccceeccCCC--C--C----C--CCCCCCCCCCceeee--------------------e-cCCCC-------CC
Q 012181 324 LGVINYYIVYVKDNPS--S--L----N--KKLRDWNADSATEIF--------------------C-QNTPR-------RS 365 (469)
Q Consensus 324 iGiNYY~~~~v~~~~~--~--~----~--~~~~~~~~d~~~~i~--------------------I-ENG~~-------~~ 365 (469)
||||||++.+|+..+. . . . ..+....+++||+|+ | |||+. ++
T Consensus 309 lGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g 388 (478)
T PRK09593 309 ISFSYYSSRVASGDPKVNEKTAGNIFASLKNPYLKASEWGWQIDPLGLRITLNTIWDRYQKPMFIVENGLGAVDKPDENG 388 (478)
T ss_pred EEEecccCcccccCCCCCCCCCCCccccccCCCcccCCCCCEECHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCC
Confidence 9999999999975321 0 0 0 001112567888865 7 99994 24
Q ss_pred CccChhhHHHHHHHHHHHHHHHH-cCCCeEEEEeeeccccccccCC-ccceeeeEEEcCCCC---CCCccccchHHHHHH
Q 012181 366 SLKDISRVKYLHAYIGSVLDAVR-NGSNIRGYFMWSFLDVFELMDG-YESSYGLYYVDRDDP---DLKRYPKLSAHWYSQ 440 (469)
Q Consensus 366 ~~~D~~Ri~yl~~hl~~v~~Ai~-dGv~V~GY~~WSl~Dn~EW~~G-y~~rfGL~~VD~~~~---~~~R~~K~S~~~y~~ 440 (469)
+++|++||+||++||++|++||+ |||||+|||+|||+|||||.+| |++|||||+||++|. +++|+||+|++||++
T Consensus 389 ~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~G~y~~RfGl~~VD~~~~~~~~~~R~pK~S~~wy~~ 468 (478)
T PRK09593 389 YVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCIDLVSAGTGEMKKRYGFIYVDRDNEGKGTLKRSKKKSFDWYKK 468 (478)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHhhcccCCCccCeeceEEECCCCCCCcccceecccHHHHHHH
Confidence 58899999999999999999995 9999999999999999999999 999999999999974 479999999999999
Q ss_pred HHhcCCCC
Q 012181 441 FLKGRSLS 448 (469)
Q Consensus 441 ii~~~~~~ 448 (469)
+|++|+.+
T Consensus 469 ii~~~~~~ 476 (478)
T PRK09593 469 VIASNGED 476 (478)
T ss_pred HHHhCCcC
Confidence 99998875
No 9
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=2.2e-117 Score=935.88 Aligned_cols=406 Identities=31% Similarity=0.541 Sum_probs=355.9
Q ss_pred CCCCCCeeeeecccccccCccCCCCCCCcccceec---cc--Cccc-----C---CCcccCccccChHHHHHHHHHcCCC
Q 012181 29 DFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFA---HA--GNVH-----G---TGDIACDGYHKYKEDVKLMADTGLD 95 (469)
Q Consensus 29 ~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~---~~--~~~~-----~---~~~~a~d~y~ry~eDi~l~~~lG~~ 95 (469)
+||++|+||+|||||||||+++++|||+|+||.|. +. +++. . ++++||||||||+|||+|||+||+|
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 59999999999999999999999999999999998 32 3331 1 4688999999999999999999999
Q ss_pred EEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHH
Q 012181 96 AYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFR 174 (469)
Q Consensus 96 ~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~ 174 (469)
+|||||+||||+|++. |.+|++||++|+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.||+
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 9999999999999974 568999999999999999999999999999999999999989999999999999999999999
Q ss_pred HhCCCceEEEEccCCcccccc-----ccc-cCC-CCCCCCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHccCC
Q 012181 175 QFGDRVSYWTTVNEPNAFANL-----GYD-YGI-APPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDK 247 (469)
Q Consensus 175 ~~gd~v~~w~t~NEp~~~~~~-----gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~~ 247 (469)
+|||+|++|+|||||++++.. ||. .|. +|||... .+..++++||+++||++|++++|++.+
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~~----------~~~~~~~~h~~llAha~A~~~~~~~~~-- 230 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGEDR----------EQIMYQAAHYELVASALAVKTGHEINP-- 230 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCch----------hHHHHHHHHHHHHHHHHHHHHHHHhCC--
Confidence 999999999999999988765 443 343 3555321 145799999999999999999999754
Q ss_pred CcccEEEEeeccccccCCCCHHHHHHHHHHHHHhhcccccceeccccchhHHhhhcCC--CCCCCHhHHhhh-cCCCCEE
Q 012181 248 QRGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSR--LPAFSDRESKQV-KGSADFL 324 (469)
Q Consensus 248 ~~~kIGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldpl~~G~yP~~~~~~l~~~--lp~~t~~d~~~i-kg~~DFi 324 (469)
+++||++++..+++|.+++|+|++||++.+.+ +.||+||+++|+||+.|++.++++ .|.||++|+++| ++++|||
T Consensus 231 -~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DFl 308 (476)
T PRK09589 231 -DFQIGCMIAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVDYI 308 (476)
T ss_pred -CCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEE
Confidence 48999999999999999999999999998854 679999999999999999999764 489999999999 5999999
Q ss_pred EeccCccceeccCCCCC--------C--CCCCCCCCCCceeee--------------------e-cCCCC-------CCC
Q 012181 325 GVINYYIVYVKDNPSSL--------N--KKLRDWNADSATEIF--------------------C-QNTPR-------RSS 366 (469)
Q Consensus 325 GiNYY~~~~v~~~~~~~--------~--~~~~~~~~d~~~~i~--------------------I-ENG~~-------~~~ 366 (469)
|||||+|.+|+...... . ..+....++++|+++ | |||+. +++
T Consensus 309 GiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~ 388 (476)
T PRK09589 309 GFSYYMSFATKFHEDNPQLDYVETRDLVSNPYVKASEWGWQIDPAGLRYSLNWFWDHYQLPLFIVENGFGAIDQREADGT 388 (476)
T ss_pred EEecccCcccccCCCCCCCCcccccccccCCCcccCCCCCccCcHHHHHHHHHHHHhcCCCEEEEeCCcccCCCCCcCCc
Confidence 99999999987421100 0 001112466787754 7 99994 345
Q ss_pred ccChhhHHHHHHHHHHHHHHH-HcCCCeEEEEeeeccccccccCC-ccceeeeEEEcCCCC---CCCccccchHHHHHHH
Q 012181 367 LKDISRVKYLHAYIGSVLDAV-RNGSNIRGYFMWSFLDVFELMDG-YESSYGLYYVDRDDP---DLKRYPKLSAHWYSQF 441 (469)
Q Consensus 367 ~~D~~Ri~yl~~hl~~v~~Ai-~dGv~V~GY~~WSl~Dn~EW~~G-y~~rfGL~~VD~~~~---~~~R~~K~S~~~y~~i 441 (469)
++|++||+||++||.+|++|| +|||||+||++|||+|||||.+| |++|||||+||++|+ +++|+||+|++||+++
T Consensus 389 i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGlv~VD~~~~~~~t~~R~pK~S~~wy~~~ 468 (476)
T PRK09589 389 VNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDLVSAGTGEMKKRYGFIYVDKDNEGKGTLERSRKKSFYWYRDV 468 (476)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccccccccccCCccccceeeEEEcCCCCCCcccccccccHHHHHHHH
Confidence 889999999999999999999 89999999999999999999999 999999999999974 4799999999999999
Q ss_pred HhcCCCC
Q 012181 442 LKGRSLS 448 (469)
Q Consensus 442 i~~~~~~ 448 (469)
|++|+..
T Consensus 469 i~~ng~~ 475 (476)
T PRK09589 469 IANNGEN 475 (476)
T ss_pred HHhcCCC
Confidence 9998764
No 10
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=2.9e-116 Score=926.72 Aligned_cols=408 Identities=30% Similarity=0.565 Sum_probs=357.8
Q ss_pred cCCCCCCCeeeeecccccccCccCCCCCCCcccceec---cc--Ccc-----cC---CCcccCccccChHHHHHHHHHcC
Q 012181 27 KNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFA---HA--GNV-----HG---TGDIACDGYHKYKEDVKLMADTG 93 (469)
Q Consensus 27 ~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~---~~--~~~-----~~---~~~~a~d~y~ry~eDi~l~~~lG 93 (469)
..+||++|+||+|||||||||++++||||+|+||.|. +. +++ .. ++++||||||||+|||+|||+||
T Consensus 3 ~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~elG 82 (477)
T PRK15014 3 KLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAEMG 82 (477)
T ss_pred cCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHHcC
Confidence 4679999999999999999999999999999999998 31 222 11 56889999999999999999999
Q ss_pred CCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHH
Q 012181 94 LDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVC 172 (469)
Q Consensus 94 ~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~ 172 (469)
+|+|||||+|+||+|++. +.+|+++|++|+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.|
T Consensus 83 ~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~~~ 162 (477)
T PRK15014 83 FKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEVV 162 (477)
T ss_pred CCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence 999999999999999974 5689999999999999999999999999999999999999899999999999999999999
Q ss_pred HHHhCCCceEEEEccCCccc-----ccccccc-CCC-CCCCCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHcc
Q 012181 173 FRQFGDRVSYWTTVNEPNAF-----ANLGYDY-GIA-PPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQ 245 (469)
Q Consensus 173 ~~~~gd~v~~w~t~NEp~~~-----~~~gy~~-g~~-~Pg~~~~~~~~~~~~~~~~~~~~~~~~l~Aha~a~~~~~~~~~ 245 (469)
|++|||+|++|+|||||+++ +..||.. |.+ ||+... .++.++|+||+++||++||+++|++.+
T Consensus 163 f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~~----------~~~~~~~~h~~llAHa~A~~~~~~~~~ 232 (477)
T PRK15014 163 FERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENP----------EETMYQVLHHQFVASALAVKAARRINP 232 (477)
T ss_pred HHHhcCcCCEEEEecCcccccccccccccccccccccCCCCch----------hHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999987 6678874 664 444211 245799999999999999999999754
Q ss_pred CCCcccEEEEeeccccccCCCCHHHHHHHHHHHHHhhcccccceeccccchhHHhhhcCCC--CCCCHhHHhhhc-CCCC
Q 012181 246 DKQRGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRL--PAFSDRESKQVK-GSAD 322 (469)
Q Consensus 246 ~~~~~kIGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldpl~~G~yP~~~~~~l~~~l--p~~t~~d~~~ik-g~~D 322 (469)
+++||++++..+++|.+++|+|++||++.+. ...+|+||+++|+||+.|++.++++. |.++++|+++|+ +++|
T Consensus 233 ---~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~~~D 308 (477)
T PRK15014 233 ---EMKVGCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREGTCD 308 (477)
T ss_pred ---CCeEEEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcCCCC
Confidence 4899999999999999999999999988763 22359999999999999999998764 789999999995 9999
Q ss_pred EEEeccCccceeccCCCC------C-CCCCCC--CCCCCceeee--------------------e-cCCCC-------CC
Q 012181 323 FLGVINYYIVYVKDNPSS------L-NKKLRD--WNADSATEIF--------------------C-QNTPR-------RS 365 (469)
Q Consensus 323 FiGiNYY~~~~v~~~~~~------~-~~~~~~--~~~d~~~~i~--------------------I-ENG~~-------~~ 365 (469)
|||||||+|.+|+..... . ...++. ..++++|+++ | |||+. ++
T Consensus 309 FlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g 388 (477)
T PRK15014 309 YLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPYVKASDWGWQIDPVGLRYALCELYERYQKPLFIVENGFGAYDKVEEDG 388 (477)
T ss_pred EEEEcceeCeeeccCCCCCCCccccccccCCCCcccCCCCCccCcHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcCcCC
Confidence 999999999999752210 0 000111 2467888764 7 99994 34
Q ss_pred CccChhhHHHHHHHHHHHHHHHH-cCCCeEEEEeeeccccccccCC-ccceeeeEEEcCCCC---CCCccccchHHHHHH
Q 012181 366 SLKDISRVKYLHAYIGSVLDAVR-NGSNIRGYFMWSFLDVFELMDG-YESSYGLYYVDRDDP---DLKRYPKLSAHWYSQ 440 (469)
Q Consensus 366 ~~~D~~Ri~yl~~hl~~v~~Ai~-dGv~V~GY~~WSl~Dn~EW~~G-y~~rfGL~~VD~~~~---~~~R~~K~S~~~y~~ 440 (469)
+++|++||+||++||++|++||+ |||||+||++|||+|||||.+| |++|||||+||++|+ +++|+||+|++||++
T Consensus 389 ~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~DnfEw~~G~y~~RfGl~~VD~~~~~~~~~~R~pK~S~~wy~~ 468 (477)
T PRK15014 389 SINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFNWYKE 468 (477)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhcccCCCccCccceEEECCCCCCCcccceecccHHHHHHH
Confidence 58899999999999999999996 9999999999999999999999 999999999999975 479999999999999
Q ss_pred HHhcCCCC
Q 012181 441 FLKGRSLS 448 (469)
Q Consensus 441 ii~~~~~~ 448 (469)
+|++|+..
T Consensus 469 ii~~ng~~ 476 (477)
T PRK15014 469 VIASNGEK 476 (477)
T ss_pred HHHhcCCC
Confidence 99998764
No 11
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=9.9e-118 Score=939.15 Aligned_cols=404 Identities=49% Similarity=0.909 Sum_probs=353.9
Q ss_pred CCCCCCCeeeeecccccccCccCCCCCCCcccceeccc-CcccC--CCcccCccccChHHHHHHHHHcCCCEEEeccccc
Q 012181 28 NDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA-GNVHG--TGDIACDGYHKYKEDVKLMADTGLDAYRFSISWS 104 (469)
Q Consensus 28 ~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~-~~~~~--~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~W~ 104 (469)
.+||++|+||+|||||||||++++|||++|+||.|++. +++.+ ++++||||||||+|||+|||+||+++|||||+|+
T Consensus 3 ~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~ 82 (455)
T PF00232_consen 3 KKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISWS 82 (455)
T ss_dssp GGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--HH
T ss_pred CCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecchh
Confidence 47999999999999999999999999999999999998 66544 7899999999999999999999999999999999
Q ss_pred ccccCC-CCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHHHhCCCceEE
Q 012181 105 RLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYW 183 (469)
Q Consensus 105 ri~P~~-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w 183 (469)
||+|++ .|.+|++++++|+++|++|+++||+|+|||+|||+|+||++ +|||+|+++++.|++||+.|+++|||+|++|
T Consensus 83 Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w 161 (455)
T PF00232_consen 83 RIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKYW 161 (455)
T ss_dssp HHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSEE
T ss_pred heeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcceE
Confidence 999997 69999999999999999999999999999999999999998 8999999999999999999999999999999
Q ss_pred EEccCCccccccccccCCCCCCCCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHccCCCcccEEEEeecccccc
Q 012181 184 TTVNEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGLLP 263 (469)
Q Consensus 184 ~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~~~~~kIGi~~~~~~~~P 263 (469)
+|||||++++..||+.|.+|||..+. ++.++++||+++||++||+++|+++ ++++||++++..+++|
T Consensus 162 ~T~NEp~~~~~~~y~~g~~~p~~~~~----------~~~~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P 228 (455)
T PF00232_consen 162 ITFNEPNVFALLGYLYGGFPPGRDSL----------KAFYQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNFSPFYP 228 (455)
T ss_dssp EEEETHHHHHHHHHTSSSSTTCSSTH----------HHHHHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEEEEEEE
T ss_pred Eeccccceeecccccccccccccccc----------chhhHHHhhHHHHHHHHHHHHhhcc---cceEEeccccccccCC
Confidence 99999999999999999999996554 6789999999999999999999986 4599999999999999
Q ss_pred CCCCHHHH-HHHHHHHHHhhcccccceeccccchhHHhhhcCC--CCCCCHhHHhhhcCCCCEEEeccCccceeccCCCC
Q 012181 264 LTNSTEDA-IATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSR--LPAFSDRESKQVKGSADFLGVINYYIVYVKDNPSS 340 (469)
Q Consensus 264 ~~~~~~D~-~Aa~~~~~~~~~~fldpl~~G~yP~~~~~~l~~~--lp~~t~~d~~~ikg~~DFiGiNYY~~~~v~~~~~~ 340 (469)
.+++++|. +||++.+++.|+||+||+++|+||..|++.++++ +|.||++|++.|++++||+|||||++..|+..+..
T Consensus 229 ~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~~ 308 (455)
T PF00232_consen 229 LSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPNP 308 (455)
T ss_dssp SSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSSS
T ss_pred CCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccCccc
Confidence 99998876 8899999999999999999999999999999987 99999999999999999999999999999876531
Q ss_pred CCC-------------CCCCCCCCCceeee---------------------e-cCCCC------CCCccChhhHHHHHHH
Q 012181 341 LNK-------------KLRDWNADSATEIF---------------------C-QNTPR------RSSLKDISRVKYLHAY 379 (469)
Q Consensus 341 ~~~-------------~~~~~~~d~~~~i~---------------------I-ENG~~------~~~~~D~~Ri~yl~~h 379 (469)
... .+....++++|+++ | |||++ .+.++|+.||+||++|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~l~~~Y~~~pI~ITENG~~~~~~~~~~~v~D~~Ri~yl~~h 388 (455)
T PF00232_consen 309 SSPPSYDSDAPFGQPYNPGGPTTDWGWEIYPEGLRDVLRYLKDRYGNPPIYITENGIGDPDEVDDGKVDDDYRIDYLQDH 388 (455)
T ss_dssp TSSTTHEEEESEEEECETSSEBCTTSTBBETHHHHHHHHHHHHHHTSSEEEEEEE---EETTCTTSHBSHHHHHHHHHHH
T ss_pred cccccccCCccccccccccccccccCcccccchHhhhhhhhccccCCCcEEEecccccccccccccCcCcHHHHHHHHHH
Confidence 100 01112467777654 7 99993 1457899999999999
Q ss_pred HHHHHHHHHcCCCeEEEEeeeccccccccCCccceeeeEEEc-CCCCCCCccccchHHHHHHHHhcCCC
Q 012181 380 IGSVLDAVRNGSNIRGYFMWSFLDVFELMDGYESSYGLYYVD-RDDPDLKRYPKLSAHWYSQFLKGRSL 447 (469)
Q Consensus 380 l~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD-~~~~~~~R~~K~S~~~y~~ii~~~~~ 447 (469)
|.+|++||+|||||+||++|||+|||||.+||++|||||+|| ++| ++|+||+|++||+++|++||+
T Consensus 389 l~~v~~Ai~dGv~V~GY~~WSl~Dn~Ew~~Gy~~rfGl~~VD~~~~--~~R~pK~S~~~y~~~i~~ng~ 455 (455)
T PF00232_consen 389 LNQVLKAIEDGVNVRGYFAWSLLDNFEWAEGYKKRFGLVYVDFFDT--LKRTPKKSAYWYKDFIRSNGF 455 (455)
T ss_dssp HHHHHHHHHTT-EEEEEEEETSB---BGGGGGGSE--SEEEETTTT--TEEEEBHHHHHHHHHHHHTEE
T ss_pred HHHHHhhhccCCCeeeEeeeccccccccccCccCccCceEEcCCCC--cCeeeccHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999 555 999999999999999999974
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=7.4e-116 Score=922.14 Aligned_cols=406 Identities=30% Similarity=0.497 Sum_probs=363.0
Q ss_pred CCCCCCeeeeecccccccCccCCCCCCCcccceeccc-Cccc------------C----CCcccCccccChHHHHHHHHH
Q 012181 29 DFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA-GNVH------------G----TGDIACDGYHKYKEDVKLMAD 91 (469)
Q Consensus 29 ~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~-~~~~------------~----~~~~a~d~y~ry~eDi~l~~~ 91 (469)
+||++|+||+|||||||||+++++|||+|+||.+++. +++. + ++++||||||||+|||++|++
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~ 82 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAE 82 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHH
Confidence 5999999999999999999999999999999999984 4331 1 568899999999999999999
Q ss_pred cCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhhHHHHHHHHH
Q 012181 92 TGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYAD 170 (469)
Q Consensus 92 lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~ 170 (469)
||+|+|||||+|+||+|++. +.+|+++|++|+++|++|+++||+|+|||+|||+|+||++++|||+|++++++|++||+
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~ 162 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYAR 162 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999974 56899999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHhCCCceEEEEccCCccccccccc-cCC-CCCCCCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHccCCC
Q 012181 171 VCFRQFGDRVSYWTTVNEPNAFANLGYD-YGI-APPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQ 248 (469)
Q Consensus 171 ~~~~~~gd~v~~w~t~NEp~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~~~ 248 (469)
.|+++|||+|++|+|||||++++..||. .|. +|||... .+..++++||+++|||+||+++|++.+
T Consensus 163 ~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~----------~~~~~~~~hn~llAHa~A~~~~~~~~~--- 229 (474)
T PRK09852 163 TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ----------DQVKYQAAHHELVASALATKIAHEVNP--- 229 (474)
T ss_pred HHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc----------hHhHHHHHHHHHHHHHHHHHHHHHhCC---
Confidence 9999999999999999999999999996 564 5787432 145799999999999999999999754
Q ss_pred cccEEEEeeccccccCCCCHHHHHHHHHHHHHhhcccccceeccccchhHHhhhcCC--CCCCCHhHHhhhcCCCCEEEe
Q 012181 249 RGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSR--LPAFSDRESKQVKGSADFLGV 326 (469)
Q Consensus 249 ~~kIGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldpl~~G~yP~~~~~~l~~~--lp~~t~~d~~~ikg~~DFiGi 326 (469)
+++||++++..+++|.+++++|++||++.+ +.+.||+||+++|+||+.|++.++++ +|.|+++|+++|++++|||||
T Consensus 230 ~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlGi 308 (474)
T PRK09852 230 QNQVGCMLAGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVSF 308 (474)
T ss_pred CCeEEEEEeCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEEE
Confidence 489999999999999999999999998766 55889999999999999999999764 799999999999999999999
Q ss_pred ccCccceeccCCC--C--C----C--CCCCCCCCCCceeee--------------------e-cCCCC-------CCCcc
Q 012181 327 INYYIVYVKDNPS--S--L----N--KKLRDWNADSATEIF--------------------C-QNTPR-------RSSLK 368 (469)
Q Consensus 327 NYY~~~~v~~~~~--~--~----~--~~~~~~~~d~~~~i~--------------------I-ENG~~-------~~~~~ 368 (469)
|||++.+|+.... . . . ..+....++++|+|+ | |||+. ++.++
T Consensus 309 NyYt~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~ 388 (474)
T PRK09852 309 SYYASRCASAEMNANNSSAANVVKSLRNPYLQVSDWGWGIDPLGLRITMNMMYDRYQKPLFLVENGLGAKDEIAANGEIN 388 (474)
T ss_pred ccccCeecccCCCCCCCCcCCceecccCCCcccCCCCCeeChHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcCCCCccC
Confidence 9999999975211 0 0 0 001112467888764 7 99994 24578
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCCeEEEEeeeccccccccCC-ccceeeeEEEcCCCC---CCCccccchHHHHHHHHhc
Q 012181 369 DISRVKYLHAYIGSVLDAVRNGSNIRGYFMWSFLDVFELMDG-YESSYGLYYVDRDDP---DLKRYPKLSAHWYSQFLKG 444 (469)
Q Consensus 369 D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~G-y~~rfGL~~VD~~~~---~~~R~~K~S~~~y~~ii~~ 444 (469)
|++||+||++||++|++||+|||||+|||+|||||||||.+| |++|||||+||++|. +++|+||+|++||+++|++
T Consensus 389 D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGLv~VD~~~~~~~t~~R~pK~S~~wy~~ii~~ 468 (474)
T PRK09852 389 DDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVYVDRDDAGNGTLTRTRKKSFWWYKKVIAS 468 (474)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccccccCCCccceeeeEEECCCCCCCcccceecccHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999 999999999999974 4799999999999999999
Q ss_pred CCCC
Q 012181 445 RSLS 448 (469)
Q Consensus 445 ~~~~ 448 (469)
|+.+
T Consensus 469 ng~~ 472 (474)
T PRK09852 469 NGED 472 (474)
T ss_pred CCcc
Confidence 9875
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=8.5e-112 Score=885.03 Aligned_cols=392 Identities=42% Similarity=0.791 Sum_probs=357.9
Q ss_pred CCCCCeeeeecccccccCccCCCCCCCcccceeccc-CcccC--CCcccCccccChHHHHHHHHHcCCCEEEeccccccc
Q 012181 30 FPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA-GNVHG--TGDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRL 106 (469)
Q Consensus 30 fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~-~~~~~--~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~W~ri 106 (469)
||++|+||+||||||+||+++++|||+|+||.+.+. +++.+ ++++||||||||+|||++|++||+++|||||+|+||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 899999999999999999999999999999999886 54433 788999999999999999999999999999999999
Q ss_pred ccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHHHhCCCceEEEEc
Q 012181 107 IPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTV 186 (469)
Q Consensus 107 ~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~ 186 (469)
+|++.|.+|++++++|+++|+.|+++||+|+|||+|||+|+||+++ |||.|+++++.|++||+.|+++|||+|++|+|+
T Consensus 81 ~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~ 159 (427)
T TIGR03356 81 FPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWITL 159 (427)
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEe
Confidence 9996689999999999999999999999999999999999999987 999999999999999999999999999999999
Q ss_pred cCCccccccccccCCCCCCCCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHccCCCcccEEEEeeccccccCCC
Q 012181 187 NEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGLLPLTN 266 (469)
Q Consensus 187 NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~~~~~kIGi~~~~~~~~P~~~ 266 (469)
|||++++..||..|.+||+.++. +..++++||+++||++||+++|++.+ ++|||++++..+++|.++
T Consensus 160 NEp~~~~~~~y~~G~~~P~~~~~----------~~~~~~~hnll~Aha~A~~~~~~~~~---~~~IGi~~~~~~~~P~~~ 226 (427)
T TIGR03356 160 NEPWCSAFLGYGLGVHAPGLRDL----------RAALQAAHHLLLAHGLAVQALRANGP---GAQVGIVLNLTPVYPASD 226 (427)
T ss_pred cCcceecccchhhccCCCCCccH----------HHHHHHHHHHHHHHHHHHHHHHHhCC---CCeEEEEEeCCeeeeCCC
Confidence 99999999999999999985432 35789999999999999999999864 499999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcccccceeccccchhHHhhhcCCCCCCCHhHHhhhcCCCCEEEeccCccceeccCCCCCC----
Q 012181 267 STEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLPAFSDRESKQVKGSADFLGVINYYIVYVKDNPSSLN---- 342 (469)
Q Consensus 267 ~~~D~~Aa~~~~~~~~~~fldpl~~G~yP~~~~~~l~~~lp~~t~~d~~~ikg~~DFiGiNYY~~~~v~~~~~~~~---- 342 (469)
+++|+.||++.+++.++||+||+++|+||..|++.++. +|.+|++|++++++++||||||||++..|+.......
T Consensus 227 ~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~-~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~~~~~~ 305 (427)
T TIGR03356 227 SPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLGD-APFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTGAGFVE 305 (427)
T ss_pred CHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhcc-CCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCCCCccc
Confidence 99999999999999999999999999999999999974 7999999999999999999999999999875321100
Q ss_pred CCCCCCCCCCceeee---------------------e-cCCCC------CCCccChhhHHHHHHHHHHHHHHHHcCCCeE
Q 012181 343 KKLRDWNADSATEIF---------------------C-QNTPR------RSSLKDISRVKYLHAYIGSVLDAVRNGSNIR 394 (469)
Q Consensus 343 ~~~~~~~~d~~~~i~---------------------I-ENG~~------~~~~~D~~Ri~yl~~hl~~v~~Ai~dGv~V~ 394 (469)
..+....++++|+++ | |||+. +++++|++||+||++||++|++||+|||||+
T Consensus 306 ~~~~~~~~~~gw~i~P~Gl~~~L~~~~~rY~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~ 385 (427)
T TIGR03356 306 VPEGVPKTAMGWEVYPEGLYDLLLRLKEDYPGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIEEGVDVR 385 (427)
T ss_pred cCCCCCcCCCCCeechHHHHHHHHHHHHhcCCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 001112356777653 7 99994 2457899999999999999999999999999
Q ss_pred EEEeeeccccccccCCccceeeeEEEcCCCCCCCccccchHHHH
Q 012181 395 GYFMWSFLDVFELMDGYESSYGLYYVDRDDPDLKRYPKLSAHWY 438 (469)
Q Consensus 395 GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~~R~~K~S~~~y 438 (469)
||++|||+|||||.+||++|||||+||++| ++|+||+|++||
T Consensus 386 GY~~Wsl~Dn~ew~~gy~~rfGl~~VD~~~--~~R~~K~S~~wy 427 (427)
T TIGR03356 386 GYFVWSLLDNFEWAEGYSKRFGLVHVDYET--QKRTPKDSAKWY 427 (427)
T ss_pred EEEecccccccchhcccccccceEEECCCC--CcccccceeeeC
Confidence 999999999999999999999999999999 999999999997
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.37 E-value=3.5e-11 Score=118.29 Aligned_cols=247 Identities=16% Similarity=0.194 Sum_probs=147.6
Q ss_pred ccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcc--eEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHHHhCC
Q 012181 101 ISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQP--HVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGD 178 (469)
Q Consensus 101 i~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p--~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd 178 (469)
+.|++|+|++ |.+| ++..+.+++.++++||++ ...+.|...|.|+... + .++..+.+.+|++.+++||++
T Consensus 1 ~kW~~~ep~~-G~~n---~~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~--~--~~~~~~~~~~~i~~v~~ry~g 72 (254)
T smart00633 1 MKWDSTEPSR-GQFN---FSGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL--S--KETLLARLENHIKTVVGRYKG 72 (254)
T ss_pred CCcccccCCC-CccC---hHHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC--C--HHHHHHHHHHHHHHHHHHhCC
Confidence 3699999998 9999 667899999999999995 4456788999999642 2 457789999999999999999
Q ss_pred CceEEEEccCCccccccccccCCCCCCCCCCccccCCCCCCChhHHHH-HHHHHHHHHHHHHHHHHccCCCcccEEEEee
Q 012181 179 RVSYWTTVNEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITV-HHVLLAHASVARLYRKKYQDKQRGYIGVNIF 257 (469)
Q Consensus 179 ~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~-~~~l~Aha~a~~~~~~~~~~~~~~kIGi~~~ 257 (469)
+|..|.++|||...... |.+.. ..++++ ... -..|.++.|+..|. .++-+ |
T Consensus 73 ~i~~wdV~NE~~~~~~~---------~~~~~-----------~w~~~~G~~~---i~~af~~ar~~~P~---a~l~~--N 124 (254)
T smart00633 73 KIYAWDVVNEALHDNGS---------GLRRS-----------VWYQILGEDY---IEKAFRYAREADPD---AKLFY--N 124 (254)
T ss_pred cceEEEEeeecccCCCc---------ccccc-----------hHHHhcChHH---HHHHHHHHHHhCCC---CEEEE--e
Confidence 99999999999853211 11110 011111 011 22466777877654 55533 3
Q ss_pred ccccccCCCCHHHHHHHHHHHHHhhcccccceeccccchhHHhhhcCCCCCCCHhHHhhhcCCCCEEEeccCccceeccC
Q 012181 258 AFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLPAFSDRESKQVKGSADFLGVINYYIVYVKDN 337 (469)
Q Consensus 258 ~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldpl~~G~yP~~~~~~l~~~lp~~t~~d~~~ikg~~DFiGiNYY~~~~v~~~ 337 (469)
-.... +. +... ....++. + ++..-..++|=||++..-. ...
T Consensus 125 dy~~~--~~-~~k~---~~~~~~v------------------~------------~l~~~g~~iDgiGlQ~H~~---~~~ 165 (254)
T smart00633 125 DYNTE--EP-NAKR---QAIYELV------------------K------------KLKAKGVPIDGIGLQSHLS---LGS 165 (254)
T ss_pred ccCCc--Cc-cHHH---HHHHHHH------------------H------------HHHHCCCccceeeeeeeec---CCC
Confidence 11111 11 0111 1111110 0 0111124589999964321 100
Q ss_pred CCC--CCCCCCCCCCCCceeeee-cCCCCCCCccChhhHHHHHHHHHHHHHHHHcCCCeEEEEeeeccccccccCCccce
Q 012181 338 PSS--LNKKLRDWNADSATEIFC-QNTPRRSSLKDISRVKYLHAYIGSVLDAVRNGSNIRGYFMWSFLDVFELMDGYESS 414 (469)
Q Consensus 338 ~~~--~~~~~~~~~~d~~~~i~I-ENG~~~~~~~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~r 414 (469)
+.. ....... ..+.|.+|.| |.++.... ......+++++.+..+.+- -.|.|.+.|.+.|..+|..+ .+
T Consensus 166 ~~~~~~~~~l~~-~~~~g~pi~iTE~dv~~~~-~~~~qA~~~~~~l~~~~~~----p~v~gi~~Wg~~d~~~W~~~--~~ 237 (254)
T smart00633 166 PNIAEIRAALDR-FASLGLEIQITELDISGYP-NPQAQAADYEEVFKACLAH----PAVTGVTVWGVTDKYSWLDG--GA 237 (254)
T ss_pred CCHHHHHHHHHH-HHHcCCceEEEEeecCCCC-cHHHHHHHHHHHHHHHHcC----CCeeEEEEeCCccCCcccCC--CC
Confidence 000 0000000 1344677778 99984211 1145556666666655442 27899999999999999865 56
Q ss_pred eeeEEEcCCCCCCCccccchHHH
Q 012181 415 YGLYYVDRDDPDLKRYPKLSAHW 437 (469)
Q Consensus 415 fGL~~VD~~~~~~~R~~K~S~~~ 437 (469)
.||+.= .-+|||++++
T Consensus 238 ~~L~d~-------~~~~kpa~~~ 253 (254)
T smart00633 238 PLLFDA-------NYQPKPAYWA 253 (254)
T ss_pred ceeECC-------CCCCChhhhc
Confidence 788842 3455777764
No 15
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.30 E-value=6e-12 Score=130.48 Aligned_cols=109 Identities=24% Similarity=0.450 Sum_probs=87.7
Q ss_pred cChHHHHHHHHHcCCCEEEe-cccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhh-----
Q 012181 80 HKYKEDVKLMADTGLDAYRF-SISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEY----- 153 (469)
Q Consensus 80 ~ry~eDi~l~~~lG~~~~R~-si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~----- 153 (469)
..+++|+++|+++|+|++|+ .+.|+++||++ |++| +..+|++|+.+.++||++++.+.+...|.||.+++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e-G~yd---F~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~ 85 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE-GQYD---FSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILP 85 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT-TB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC-Ceee---cHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccc
Confidence 45799999999999999996 57999999998 9999 77799999999999999999999999999998643
Q ss_pred ----------CCC-----CChhhHHHHHHHHHHHHHHhCCC--ceEEEEccCCccc
Q 012181 154 ----------GGW-----INRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPNAF 192 (469)
Q Consensus 154 ----------ggw-----~~~~~~~~f~~ya~~~~~~~gd~--v~~w~t~NEp~~~ 192 (469)
|+. .+|...+.+.++++.++++|++. |-.|.+.|||...
T Consensus 86 ~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 86 VDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred cCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 211 25567788899999999999985 6789999999753
No 16
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.22 E-value=3.6e-11 Score=118.44 Aligned_cols=109 Identities=22% Similarity=0.353 Sum_probs=90.7
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccc-cCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCC-C
Q 012181 81 KYKEDVKLMADTGLDAYRFSISWSRLI-PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWI-N 158 (469)
Q Consensus 81 ry~eDi~l~~~lG~~~~R~si~W~ri~-P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~-~ 158 (469)
..++|++.|+++|+|++|+.|.|..++ |.+.+.++.+.++.++++|+.++++||.++|++|+. |.|.... ++.. .
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~~~ 98 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYGNN 98 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTTTH
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-cccccc
Confidence 459999999999999999999998888 565456999999999999999999999999999876 7774332 2333 3
Q ss_pred hhhHHHHHHHHHHHHHHhCC--CceEEEEccCCccc
Q 012181 159 RTIVKDFTAYADVCFRQFGD--RVSYWTTVNEPNAF 192 (469)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~gd--~v~~w~t~NEp~~~ 192 (469)
....+.|.++++.++++|++ .|..|.++|||...
T Consensus 99 ~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 99 DTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG 134 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST
T ss_pred hhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc
Confidence 45678899999999999954 68899999999854
No 17
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.80 E-value=6.8e-08 Score=98.22 Aligned_cols=296 Identities=15% Similarity=0.185 Sum_probs=165.5
Q ss_pred CCCCeeeeecccccccCccCCCCCCCcccceecccCcccCCCcccCccccChHHHHHHHHHcCCCEEEe--ccccccccc
Q 012181 31 PPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHAGNVHGTGDIACDGYHKYKEDVKLMADTGLDAYRF--SISWSRLIP 108 (469)
Q Consensus 31 p~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~--si~W~ri~P 108 (469)
+..|.+|+|.++.++++. ...+.+-.-.+|..-. ...|..++|
T Consensus 7 ~~~f~~G~av~~~~~~~~-----------------------------------~~~~~~~~~~Fn~~t~eN~~Kw~~~e~ 51 (320)
T PF00331_consen 7 KHKFPFGAAVNAQQLEDD-----------------------------------PRYRELFAKHFNSVTPENEMKWGSIEP 51 (320)
T ss_dssp CTTTEEEEEEBGGGHTHH-----------------------------------HHHHHHHHHH-SEEEESSTTSHHHHES
T ss_pred hccCCEEEEechhHcCCc-----------------------------------HHHHHHHHHhCCeeeeccccchhhhcC
Confidence 457999999999999874 1223333344555555 489999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHcCCcce--EeecCCCCchhHHhhhCCCCChh---hHHHHHHHHHHHHHHhCC--Cce
Q 012181 109 NGRGPVNPKGLQYYNNLINELISYGIQPH--VTLHHFDLPQALEDEYGGWINRT---IVKDFTAYADVCFRQFGD--RVS 181 (469)
Q Consensus 109 ~~~g~~n~~~~~~y~~~i~~l~~~gi~p~--vtL~H~~~P~~l~~~~ggw~~~~---~~~~f~~ya~~~~~~~gd--~v~ 181 (469)
.+ |.+| ++..+++++-++++||++- .-+.|--.|.|+... .-+...+ ..+...+|.+.++++|++ +|.
T Consensus 52 ~~-g~~~---~~~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~ 126 (320)
T PF00331_consen 52 EP-GRFN---FESADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKTVVTRYKDKGRIY 126 (320)
T ss_dssp BT-TBEE----HHHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTES
T ss_pred CC-CccC---ccchhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHHHHhHhccccceE
Confidence 98 9999 6668999999999999987 344566899999752 1223222 678899999999999995 899
Q ss_pred EEEEccCCccccccccccCCCCCCCCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHccCCCcccEEEEeecccc
Q 012181 182 YWTTVNEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGL 261 (469)
Q Consensus 182 ~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~~~~~kIGi~~~~~~~ 261 (469)
.|-+.|||-.... .+-+.++ ...++++-. ---..|.+.-|+..|. .+.=+ |-...
T Consensus 127 ~WDVvNE~i~~~~-------~~~~~r~-----------~~~~~~lG~--~yi~~aF~~A~~~~P~---a~L~~--NDy~~ 181 (320)
T PF00331_consen 127 AWDVVNEAIDDDG-------NPGGLRD-----------SPWYDALGP--DYIADAFRAAREADPN---AKLFY--NDYNI 181 (320)
T ss_dssp EEEEEES-B-TTS-------SSSSBCT-----------SHHHHHHTT--CHHHHHHHHHHHHHTT---SEEEE--EESST
T ss_pred EEEEeeecccCCC-------ccccccC-----------ChhhhcccH--hHHHHHHHHHHHhCCC---cEEEe--ccccc
Confidence 9999999864221 1111111 112222210 0123355555666553 33333 32222
Q ss_pred ccCCCCHHHHHHHHHHHHHhhcccccceeccccchhHHhhhcCCCCCCCHhHHhhhcCCCCEEEeccCccceeccCCCCC
Q 012181 262 LPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLPAFSDRESKQVKGSADFLGVINYYIVYVKDNPSSL 341 (469)
Q Consensus 262 ~P~~~~~~D~~Aa~~~~~~~~~~fldpl~~G~yP~~~~~~l~~~lp~~t~~d~~~ikg~~DFiGiNYY~~~~v~~~~~~~ 341 (469)
+.. +. .....+. .+.+ ..-.-++|=||++-.-..... ....
T Consensus 182 ~~~-----~k--~~~~~~l------------------v~~l------------~~~gvpIdgIG~Q~H~~~~~~--~~~i 222 (320)
T PF00331_consen 182 ESP-----AK--RDAYLNL------------------VKDL------------KARGVPIDGIGLQSHFDAGYP--PEQI 222 (320)
T ss_dssp TST-----HH--HHHHHHH------------------HHHH------------HHTTHCS-EEEEEEEEETTSS--HHHH
T ss_pred cch-----HH--HHHHHHH------------------HHHH------------HhCCCccceechhhccCCCCC--HHHH
Confidence 211 00 0111111 0100 111124899999754221100 0000
Q ss_pred CCCCCCCCCCCceeeee-cCCCCCCC-----ccChhhHHHHHHHHHHHHHHHHcCCCeEEEEeeeccccccccCCcccee
Q 012181 342 NKKLRDWNADSATEIFC-QNTPRRSS-----LKDISRVKYLHAYIGSVLDAVRNGSNIRGYFMWSFLDVFELMDGYESSY 415 (469)
Q Consensus 342 ~~~~~~~~~d~~~~i~I-ENG~~~~~-----~~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rf 415 (469)
..... ...+.|.+|.| |..+.... ..+..+.+++++.+..+.+.-.. .|.|.+.|.+.|+.+|-....+.+
T Consensus 223 ~~~l~-~~~~~Gl~i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~~--~v~git~Wg~~D~~sW~~~~~~~~ 299 (320)
T PF00331_consen 223 WNALD-RFASLGLPIHITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSHPPA--AVEGITWWGFTDGYSWRPDTPPDR 299 (320)
T ss_dssp HHHHH-HHHTTTSEEEEEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHTTHC--TEEEEEESSSBTTGSTTGGHSEG-
T ss_pred HHHHH-HHHHcCCceEEEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhCCcc--CCCEEEEECCCCCCcccCCCCCCC
Confidence 00000 12455677767 77762111 12345666776666555554222 899999999999999987643333
Q ss_pred -eeEEEcCCCCCCCccccchHHHHHH
Q 012181 416 -GLYYVDRDDPDLKRYPKLSAHWYSQ 440 (469)
Q Consensus 416 -GL~~VD~~~~~~~R~~K~S~~~y~~ 440 (469)
+|+. ..-.|||+++.+.+
T Consensus 300 ~~lfd-------~~~~~Kpa~~~~~~ 318 (320)
T PF00331_consen 300 PLLFD-------EDYQPKPAYDAIVD 318 (320)
T ss_dssp -SSB--------TTSBB-HHHHHHHH
T ss_pred CeeEC-------CCcCCCHHHHHHHh
Confidence 4553 44567999887765
No 18
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.62 E-value=4.4e-07 Score=97.44 Aligned_cols=106 Identities=25% Similarity=0.453 Sum_probs=63.5
Q ss_pred hHHHHHHHH-HcCCCEEEecc----ccccccc-CCCC--CCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhh-
Q 012181 82 YKEDVKLMA-DTGLDAYRFSI----SWSRLIP-NGRG--PVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDE- 152 (469)
Q Consensus 82 y~eDi~l~~-~lG~~~~R~si----~W~ri~P-~~~g--~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~- 152 (469)
+.+.++.++ ++|++.+||-= ...-..+ .+.| .+| +...|+++|.|.++||+|+|.|- -+|.++...
T Consensus 41 ~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Yn---f~~lD~i~D~l~~~g~~P~vel~--f~p~~~~~~~ 115 (486)
T PF01229_consen 41 WQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYN---FTYLDQILDFLLENGLKPFVELG--FMPMALASGY 115 (486)
T ss_dssp HHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE---SB-GGGBSS-
T ss_pred HHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCC---hHHHHHHHHHHHHcCCEEEEEEE--echhhhcCCC
Confidence 466666665 99999999852 2222222 2222 278 78899999999999999999994 477776421
Q ss_pred -----hCCCC-ChhhHHHHHHHHHHHHHHhCC-----Cce--EEEEccCCccc
Q 012181 153 -----YGGWI-NRTIVKDFTAYADVCFRQFGD-----RVS--YWTTVNEPNAF 192 (469)
Q Consensus 153 -----~ggw~-~~~~~~~f~~ya~~~~~~~gd-----~v~--~w~t~NEp~~~ 192 (469)
+.|+. .|+..+.|.++++.+++|+-+ .|+ +|++||||++.
T Consensus 116 ~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~ 168 (486)
T PF01229_consen 116 QTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLK 168 (486)
T ss_dssp -EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTST
T ss_pred CccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcc
Confidence 12233 245678888888777665533 466 46899999963
No 19
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.45 E-value=3.9e-07 Score=99.72 Aligned_cols=117 Identities=20% Similarity=0.328 Sum_probs=89.5
Q ss_pred hHHHHHHHHHcCCCEEEec-ccccccccCCCCCCChhhHHHHHHH-HHHHHHcCCcceEee-cCCCCchhHHhhh-----
Q 012181 82 YKEDVKLMADTGLDAYRFS-ISWSRLIPNGRGPVNPKGLQYYNNL-INELISYGIQPHVTL-HHFDLPQALEDEY----- 153 (469)
Q Consensus 82 y~eDi~l~~~lG~~~~R~s-i~W~ri~P~~~g~~n~~~~~~y~~~-i~~l~~~gi~p~vtL-~H~~~P~~l~~~~----- 153 (469)
+++|++.||++|+|++|.+ ++|++++|+. |++|.. +.|.. ++.+.+.|+..++.. .....|.|+..++
T Consensus 32 w~ddl~~mk~~G~N~V~ig~faW~~~eP~e-G~fdf~---~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~ 107 (673)
T COG1874 32 WMDDLRKMKALGLNTVRIGYFAWNLHEPEE-GKFDFT---WLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEILA 107 (673)
T ss_pred HHHHHHHHHHhCCCeeEeeeEEeeccCccc-cccCcc---cchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhheE
Confidence 5899999999999999995 5999999998 999944 67777 999999999999998 7789999998764
Q ss_pred ----------CCCCChhhH-HHHHHHHHH----HHHH-hCCC--ceEEEEccCCcc-ccccccccCCC
Q 012181 154 ----------GGWINRTIV-KDFTAYADV----CFRQ-FGDR--VSYWTTVNEPNA-FANLGYDYGIA 202 (469)
Q Consensus 154 ----------ggw~~~~~~-~~f~~ya~~----~~~~-~gd~--v~~w~t~NEp~~-~~~~gy~~g~~ 202 (469)
|+|.+-... ..|..|++. +.+| ||+. |-.|.+-||-.. .+.+.|....|
T Consensus 108 ~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f 175 (673)
T COG1874 108 VDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAF 175 (673)
T ss_pred ecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHH
Confidence 566533322 235555555 7888 7774 667999998665 34444433333
No 20
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.43 E-value=2.1e-05 Score=86.81 Aligned_cols=249 Identities=19% Similarity=0.232 Sum_probs=140.7
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHh-------hh
Q 012181 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALED-------EY 153 (469)
Q Consensus 81 ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~-------~~ 153 (469)
.+..|+++||++|+|++|+|- .|.. ..+++.|-+.||-++.-+.-+....|... ..
T Consensus 314 ~~~~d~~l~K~~G~N~vR~sh-----~p~~------------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~ 376 (604)
T PRK10150 314 LNVHDHNLMKWIGANSFRTSH-----YPYS------------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPK 376 (604)
T ss_pred HHHHHHHHHHHCCCCEEEecc-----CCCC------------HHHHHHHHhcCcEEEEeccccccccccccccccccccc
Confidence 468899999999999999952 2322 46788999999988866543332223210 01
Q ss_pred CCCC----ChhhHHHHHHHHHHHHHHhCCC--ceEEEEccCCccccccccccCCCCCCCCCCccccCCCCCCChhHHHHH
Q 012181 154 GGWI----NRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVH 227 (469)
Q Consensus 154 ggw~----~~~~~~~f~~ya~~~~~~~gd~--v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~ 227 (469)
..|. +++..+.+.+-++.++++++.+ |-.|.+.||+... .++ ..
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~----------~~~-----------------~~--- 426 (604)
T PRK10150 377 ETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASR----------EQG-----------------AR--- 426 (604)
T ss_pred ccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCcc----------chh-----------------HH---
Confidence 1222 3567788889899999999886 5579999996310 000 10
Q ss_pred HHHHHHHHHHHHHHHHccCCCcccEEEEeeccccccCCCCHHHHHHHHHHHHHhhcccccceeccccchhHHhhhcCCCC
Q 012181 228 HVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLP 307 (469)
Q Consensus 228 ~~l~Aha~a~~~~~~~~~~~~~~kIGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldpl~~G~yP~~~~~~l~~~lp 307 (469)
..+...++++|++.|.. .|....+... .+- .
T Consensus 427 ---~~~~~l~~~~k~~DptR---~vt~~~~~~~--------------------------~~~-~---------------- 457 (604)
T PRK10150 427 ---EYFAPLAELTRKLDPTR---PVTCVNVMFA--------------------------TPD-T---------------- 457 (604)
T ss_pred ---HHHHHHHHHHHhhCCCC---ceEEEecccC--------------------------Ccc-c----------------
Confidence 11234456677776542 2433321100 000 0
Q ss_pred CCCHhHHhhhcCCCCEEEeccCccceeccCCCC-----CCCCCCCCCCCCceeeee-cCCCC---------CCCccChhh
Q 012181 308 AFSDRESKQVKGSADFLGVINYYIVYVKDNPSS-----LNKKLRDWNADSATEIFC-QNTPR---------RSSLKDISR 372 (469)
Q Consensus 308 ~~t~~d~~~ikg~~DFiGiNYY~~~~v~~~~~~-----~~~~~~~~~~d~~~~i~I-ENG~~---------~~~~~D~~R 372 (469)
..+...+|++|+|.|..-+....... .......+....+..+.| |.|.. +..-..++.
T Consensus 458 -------~~~~~~~Dv~~~N~Y~~wy~~~~~~~~~~~~~~~~~~~~~~~~~kP~~isEyg~~~~~~~h~~~~~~~~ee~q 530 (604)
T PRK10150 458 -------DTVSDLVDVLCLNRYYGWYVDSGDLETAEKVLEKELLAWQEKLHKPIIITEYGADTLAGLHSMYDDMWSEEYQ 530 (604)
T ss_pred -------ccccCcccEEEEcccceecCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEccCCccccccccCCCCCCCHHHH
Confidence 01123469999998865332110000 000000000111333436 99851 011123455
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEeeeccccccccCCc----cceeeeEEEcCCCCCCCccccchHHHHHHHHhc
Q 012181 373 VKYLHAYIGSVLDAVRNGSNIRGYFMWSFLDVFELMDGY----ESSYGLYYVDRDDPDLKRYPKLSAHWYSQFLKG 444 (469)
Q Consensus 373 i~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy----~~rfGL~~VD~~~~~~~R~~K~S~~~y~~ii~~ 444 (469)
..|++.|+. ++++-=-|.|-|.|.+.|-. +..|. ....||+. ..|+||++++.||++-+.
T Consensus 531 ~~~~~~~~~----~~~~~p~~~G~~iW~~~D~~-~~~g~~~~~g~~~Gl~~-------~dr~~k~~~~~~k~~~~~ 594 (604)
T PRK10150 531 CAFLDMYHR----VFDRVPAVVGEQVWNFADFA-TSQGILRVGGNKKGIFT-------RDRQPKSAAFLLKKRWTG 594 (604)
T ss_pred HHHHHHHHH----HHhcCCceEEEEEEeeeccC-CCCCCcccCCCcceeEc-------CCCCChHHHHHHHHHhhc
Confidence 556665555 44444689999999999932 21121 13568874 568999999999998854
No 21
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=98.20 E-value=7.1e-05 Score=74.56 Aligned_cols=271 Identities=14% Similarity=0.158 Sum_probs=150.9
Q ss_pred ecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEe--ecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHHHh
Q 012181 99 FSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVT--LHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQF 176 (469)
Q Consensus 99 ~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt--L~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~ 176 (469)
=-+.|.-|+|+. |.+| ++.=|.+.+-++++||..--- +.|--.|.|+.. .-+..+.+.+...++-..|++||
T Consensus 65 nemKwe~i~p~~-G~f~---Fe~AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~rY 138 (345)
T COG3693 65 NEMKWEAIEPER-GRFN---FEAADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGRY 138 (345)
T ss_pred cccccccccCCC-CccC---ccchHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHhc
Confidence 345799999987 9999 555799999999999986432 346678999953 34677788999999999999999
Q ss_pred CCCceEEEEccCCccccccccccCCCCCCCCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHccCCCcccEEEEe
Q 012181 177 GDRVSYWTTVNEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVNI 256 (469)
Q Consensus 177 gd~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~~~~~kIGi~~ 256 (469)
++.|..|=+.|||-- ...++-...+.-+ ..+ .+ .+. +|.+.-|+..|. +|.-+..
T Consensus 139 kg~~~sWDVVNE~vd-d~g~~R~s~w~~~--------~~g---pd------~I~----~aF~~AreadP~---AkL~~ND 193 (345)
T COG3693 139 KGSVASWDVVNEAVD-DQGSLRRSAWYDG--------GTG---PD------YIK----LAFHIAREADPD---AKLVIND 193 (345)
T ss_pred cCceeEEEecccccC-CCchhhhhhhhcc--------CCc---cH------HHH----HHHHHHHhhCCC---ceEEeec
Confidence 999999999999864 2212211111110 000 11 222 233444665444 5554433
Q ss_pred eccccccCCCCHHHHHHHHHHHHHhhcccccceeccccchhHHhhhcCCCCCCCHhHHhhhcC-CCCEEEeccCccceec
Q 012181 257 FAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLPAFSDRESKQVKG-SADFLGVINYYIVYVK 335 (469)
Q Consensus 257 ~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldpl~~G~yP~~~~~~l~~~lp~~t~~d~~~ikg-~~DFiGiNYY~~~~v~ 335 (469)
-. ....|..... + ++ |.+.|.+ +| ++|=+|++-=-+.-..
T Consensus 194 Y~-----ie~~~~kr~~------~-----~n----------lI~~Lke-------------kG~pIDgiG~QsH~~~~~~ 234 (345)
T COG3693 194 YS-----IEGNPAKRNY------V-----LN----------LIEELKE-------------KGAPIDGIGIQSHFSGDGP 234 (345)
T ss_pred cc-----ccCChHHHHH------H-----HH----------HHHHHHH-------------CCCCccceeeeeeecCCCC
Confidence 11 2222221111 0 00 1111111 34 4899998743111000
Q ss_pred cCCCCCCCCCCCCCCCCceeeee-cCCCCCCC-ccChhhHHHHHHHH--HHHHHHHHcCCCeEEEEeeeccccccccCCc
Q 012181 336 DNPSSLNKKLRDWNADSATEIFC-QNTPRRSS-LKDISRVKYLHAYI--GSVLDAVRNGSNIRGYFMWSFLDVFELMDGY 411 (469)
Q Consensus 336 ~~~~~~~~~~~~~~~d~~~~i~I-ENG~~~~~-~~D~~Ri~yl~~hl--~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy 411 (469)
..+.. ......+.+- |..++| |--|...+ ..+..|-.-.+... +.-.....-.-+|.+.+.|.+.|+++|..|.
T Consensus 235 ~~~~~-~~a~~~~~k~-Gl~i~VTELD~~~~~P~~~~p~~~~~~~~~~~~~f~~~~~~~~~v~~it~WGi~D~ySWl~g~ 312 (345)
T COG3693 235 SIEKM-RAALLKFSKL-GLPIYVTELDMSDYTPDSGAPRLYLQKAASRAKAFLLLLLNPNQVKAITFWGITDRYSWLRGR 312 (345)
T ss_pred CHHHH-HHHHHHHhhc-CCCceEEEeeeeccCCCCccHHHHHHHHHHHHHHHHHHHhcccccceEEEeeeccCcccccCC
Confidence 00000 0000011112 566667 77763221 22233322222211 1112222357779999999999999999999
Q ss_pred cceeeeEEEcCCCC-CCCccccchHHHHHHHHhc
Q 012181 412 ESSYGLYYVDRDDP-DLKRYPKLSAHWYSQFLKG 444 (469)
Q Consensus 412 ~~rfGL~~VD~~~~-~~~R~~K~S~~~y~~ii~~ 444 (469)
.+|++= +...+ |-.=.|||..++.+++...
T Consensus 313 ~~~~~~---~rPl~~D~n~~pKPa~~aI~e~la~ 343 (345)
T COG3693 313 DPRRDG---LRPLLFDDNYQPKPAYKAIAEVLAP 343 (345)
T ss_pred ccCcCC---CCCcccCCCCCcchHHHHHHHHhcC
Confidence 888851 11111 2345689999998876643
No 22
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.01 E-value=0.00026 Score=72.11 Aligned_cols=102 Identities=20% Similarity=0.344 Sum_probs=69.6
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecC---CCCchhHHhhhCCCCC-
Q 012181 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH---FDLPQALEDEYGGWIN- 158 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H---~~~P~~l~~~~ggw~~- 158 (469)
++=+++||+.|+|++|+-+ | +.|...|.-| ++.-.++.++++++||+.+|++|- |.=|.--. ..-.|.+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~-~P~aW~~~ 99 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQN-KPAAWANL 99 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B---TTCTSS
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCC-CCccCCCC
Confidence 4558999999999999988 4 3444326666 778899999999999999999873 22332111 1357887
Q ss_pred --hhhHHHHHHHHHHHHHHhCC---CceEEEEccCCcc
Q 012181 159 --RTIVKDFTAYADVCFRQFGD---RVSYWTTVNEPNA 191 (469)
Q Consensus 159 --~~~~~~f~~ya~~~~~~~gd---~v~~w~t~NEp~~ 191 (469)
.+..+.-.+|.+.+.+.+++ .++++.+=||.+.
T Consensus 100 ~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~ 137 (332)
T PF07745_consen 100 SFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINN 137 (332)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccc
Confidence 56778888999999888744 6888999999873
No 23
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=97.92 E-value=3.8e-05 Score=80.77 Aligned_cols=109 Identities=19% Similarity=0.237 Sum_probs=81.6
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCC--C-CCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhh---CCC
Q 012181 83 KEDVKLMADTGLDAYRFSISWSRLIPNG--R-GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEY---GGW 156 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~~--~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~---ggw 156 (469)
++|+..||+.|+|++|+.|.|..+++.. . ...+...+...+++|+.+++.||.+++.||+..-+.-=.+.- +.+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 8999999999999999999866666542 1 233245566899999999999999999999976332222210 112
Q ss_pred C-ChhhHHHHHHHHHHHHHHhCCC--ceEEEEccCCcc
Q 012181 157 I-NRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPNA 191 (469)
Q Consensus 157 ~-~~~~~~~f~~ya~~~~~~~gd~--v~~w~t~NEp~~ 191 (469)
. +.+.++++.+-.+.++.+|++. |--..++|||+.
T Consensus 156 ~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 156 KEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 2 3566799999999999999883 334679999984
No 24
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.67 E-value=0.0028 Score=62.52 Aligned_cols=134 Identities=19% Similarity=0.369 Sum_probs=81.5
Q ss_pred CCCCCCeeeeeccc-ccccCccCCCCCCCcccceecccCcccCCCcccCccccChHHHHHHHHHcCCCEEEecccccccc
Q 012181 29 DFPPGFLFGASTSA-YQVEGAANEDGRTPSIWDTFAHAGNVHGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLI 107 (469)
Q Consensus 29 ~fp~~FlwG~atsa-~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~ 107 (469)
..|++|+-|+-.|. .|+|-. +++ |... ++. -++=++.+|+.|+|.+|+-| |-.=.
T Consensus 34 ~~~~dFikGaDis~l~~lE~~---Gvk-------f~d~-----ng~--------~qD~~~iLK~~GvNyvRlRv-wndP~ 89 (403)
T COG3867 34 NSPNDFIKGADISSLIELENS---GVK-------FFDT-----NGV--------RQDALQILKNHGVNYVRLRV-WNDPY 89 (403)
T ss_pred CChHHhhccccHHHHHHHHHc---Cce-------EEcc-----CCh--------HHHHHHHHHHcCcCeEEEEE-ecCCc
Confidence 47899999987664 466632 111 1111 111 03448999999999999976 22211
Q ss_pred cC-CC----CCCChhhHHHHHHHHHHHHHcCCcceEeec---CCCCchhHHhhhCCCCCh---hhHHHHHHHHHHHHHHh
Q 012181 108 PN-GR----GPVNPKGLQYYNNLINELISYGIQPHVTLH---HFDLPQALEDEYGGWINR---TIVKDFTAYADVCFRQF 176 (469)
Q Consensus 108 P~-~~----g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---H~~~P~~l~~~~ggw~~~---~~~~~f~~ya~~~~~~~ 176 (469)
.+ +. |.=| ++---.+-++++.+||++++.+| ||.=|..- ++.-.|.+- +...+--+|.+.+++.+
T Consensus 90 dsngn~yggGnnD---~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ-~kPkaW~~l~fe~lk~avy~yTk~~l~~m 165 (403)
T COG3867 90 DSNGNGYGGGNND---LKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQ-KKPKAWENLNFEQLKKAVYSYTKYVLTTM 165 (403)
T ss_pred cCCCCccCCCcch---HHHHHHHHHHHHhcCcEEEeeccchhhccChhhc-CCcHHhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 11 11 2234 45566777889999999999987 55556433 223456643 23345556666666665
Q ss_pred ---CCCceEEEEccCCc
Q 012181 177 ---GDRVSYWTTVNEPN 190 (469)
Q Consensus 177 ---gd~v~~w~t~NEp~ 190 (469)
|-.+..-.+=||-+
T Consensus 166 ~~eGi~pdmVQVGNEtn 182 (403)
T COG3867 166 KKEGILPDMVQVGNETN 182 (403)
T ss_pred HHcCCCccceEeccccC
Confidence 44566667999976
No 25
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.53 E-value=0.00044 Score=70.41 Aligned_cols=109 Identities=12% Similarity=0.167 Sum_probs=74.1
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeec--------CCCCchhHHhh
Q 012181 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH--------HFDLPQALEDE 152 (469)
Q Consensus 81 ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~--------H~~~P~~l~~~ 152 (469)
.|++-++.||++|+|++-.-|.|.-.||++ |++|.++..=.+.+|+.++++|+.+++=.= .-.+|.||..+
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~-g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~ 103 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEE-GQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRK 103 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBT-TB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGS
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCC-CcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhcc
Confidence 367889999999999999999999999998 999999988899999999999999776542 23599999875
Q ss_pred hCCCC---ChhhHHHHHHHHHHHHHHhCC-------CceEEEEccCCc
Q 012181 153 YGGWI---NRTIVKDFTAYADVCFRQFGD-------RVSYWTTVNEPN 190 (469)
Q Consensus 153 ~ggw~---~~~~~~~f~~ya~~~~~~~gd-------~v~~w~t~NEp~ 190 (469)
.+... ++...+.-.+|.+.+++...+ -|-...+=||..
T Consensus 104 ~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg 151 (319)
T PF01301_consen 104 PDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG 151 (319)
T ss_dssp TTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC
Confidence 33333 445566666666676666533 355566777743
No 26
>PLN03059 beta-galactosidase; Provisional
Probab=96.98 E-value=0.008 Score=67.65 Aligned_cols=108 Identities=15% Similarity=0.174 Sum_probs=85.5
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee--------cCCCCchhHHhh
Q 012181 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL--------HHFDLPQALEDE 152 (469)
Q Consensus 81 ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL--------~H~~~P~~l~~~ 152 (469)
.|++=++.||++|+|++-.=|.|.--||++ |++|.++..=..++|+.+++.|+-+|+=. -.-.+|.||...
T Consensus 60 ~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~-G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~ 138 (840)
T PLN03059 60 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSP-GNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYV 138 (840)
T ss_pred HHHHHHHHHHHcCCCeEEEEecccccCCCC-CeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcC
Confidence 467779999999999999999999999998 99999999999999999999999877754 245799999753
Q ss_pred hCCCC----ChhhHHHHHHHHHHHHHHhC---------CCceEEEEccCCc
Q 012181 153 YGGWI----NRTIVKDFTAYADVCFRQFG---------DRVSYWTTVNEPN 190 (469)
Q Consensus 153 ~ggw~----~~~~~~~f~~ya~~~~~~~g---------d~v~~w~t~NEp~ 190 (469)
.|-. ++...++-.+|.+.+++..+ .-|-...+=||-.
T Consensus 139 -~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYG 188 (840)
T PLN03059 139 -PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYG 188 (840)
T ss_pred -CCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEeccccc
Confidence 3422 55666677777777777663 3355566778843
No 27
>PLN02161 beta-amylase
Probab=96.91 E-value=0.0032 Score=66.51 Aligned_cols=111 Identities=16% Similarity=0.255 Sum_probs=86.6
Q ss_pred CccccChHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee-cCC-----------
Q 012181 76 CDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-HHF----------- 143 (469)
Q Consensus 76 ~d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL-~H~----------- 143 (469)
..+..-.+..++.+|.+|+..+-+.+=|--||+.+++++| |..|+++++.+++.|++..+.| +|-
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~I 189 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFK---WSLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGGI 189 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccCc
Confidence 4566667889999999999999999999999998779999 5559999999999999977776 343
Q ss_pred CCchhHHhh-----------hCC----------------CCChhhHHHHHHHHHHHHHHhCCCceEEEEccCCcc
Q 012181 144 DLPQALEDE-----------YGG----------------WINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (469)
Q Consensus 144 ~~P~~l~~~-----------~gg----------------w~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 191 (469)
.+|.|+.+. ..| +..+..++.|.+|-+-..++|.+... -|+.|..+
T Consensus 190 pLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~V 262 (531)
T PLN02161 190 SLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEISI 262 (531)
T ss_pred cCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 599999752 012 12233567899999988888877654 37777554
No 28
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=96.90 E-value=0.0019 Score=66.84 Aligned_cols=106 Identities=15% Similarity=0.342 Sum_probs=80.2
Q ss_pred ccChHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee-cC-----------CCCc
Q 012181 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-HH-----------FDLP 146 (469)
Q Consensus 79 y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL-~H-----------~~~P 146 (469)
+.-.+..++.||++|+..+-+.+=|.-||+.+++++| +..|+++++.+++.|++..+.| +| ..+|
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~yd---Ws~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP 91 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYD---WSGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLP 91 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCC
Confidence 4466899999999999999999999999999769999 5669999999999999988776 23 4799
Q ss_pred hhHHhh-----------hCC--------CCChhhHHHHHHHHHHHHHHhCCCceEEEEccCCc
Q 012181 147 QALEDE-----------YGG--------WINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPN 190 (469)
Q Consensus 147 ~~l~~~-----------~gg--------w~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~ 190 (469)
.|+.++ .|. |....+++.|.+|-+...++|.+.. -|+-|..
T Consensus 92 ~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~---~~I~~I~ 151 (402)
T PF01373_consen 92 SWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL---STITEIQ 151 (402)
T ss_dssp HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH---TGEEEEE
T ss_pred HHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH---hhheEEE
Confidence 999753 122 4444459999999999999997765 5666644
No 29
>PLN02803 beta-amylase
Probab=96.86 E-value=0.0037 Score=66.31 Aligned_cols=107 Identities=18% Similarity=0.331 Sum_probs=83.6
Q ss_pred cChHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee-cC-----------CCCch
Q 012181 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-HH-----------FDLPQ 147 (469)
Q Consensus 80 ~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL-~H-----------~~~P~ 147 (469)
.-.+..++.+|++|+..+-+.+=|--||+++++++| |..|+++++.+++.|++..+.| +| ..+|.
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~ 183 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYN---WEGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPP 183 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 336779999999999999999999999998779999 5559999999999999977766 34 36999
Q ss_pred hHHhhh-----------CC----------------CCChhhHHHHHHHHHHHHHHhCCCceEEEEccCCcc
Q 012181 148 ALEDEY-----------GG----------------WINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (469)
Q Consensus 148 ~l~~~~-----------gg----------------w~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 191 (469)
|+.+.. .| +..+..++.|.+|-+-..++|.+... -|+.|..+
T Consensus 184 WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~V 252 (548)
T PLN02803 184 WVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQV 252 (548)
T ss_pred HHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 997620 12 12333567889998888888877654 47777554
No 30
>PLN00197 beta-amylase; Provisional
Probab=96.86 E-value=0.0039 Score=66.38 Aligned_cols=106 Identities=19% Similarity=0.326 Sum_probs=83.6
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee-cC-----------CCCchh
Q 012181 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-HH-----------FDLPQA 148 (469)
Q Consensus 81 ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL-~H-----------~~~P~~ 148 (469)
-.+..++.+|.+|+..+-+.+=|--||+.+++++| |.-|+++++.+++.|++..+.| +| ..+|+|
T Consensus 128 ~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~Yd---WsgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~W 204 (573)
T PLN00197 128 AMKASLQALKSAGVEGIMMDVWWGLVERESPGVYN---WGGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPKW 204 (573)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHH
Confidence 37888999999999999999999999998779999 5559999999999999977776 34 369999
Q ss_pred HHhhh-----------CC----------------CCChhhHHHHHHHHHHHHHHhCCCceEEEEccCCcc
Q 012181 149 LEDEY-----------GG----------------WINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (469)
Q Consensus 149 l~~~~-----------gg----------------w~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 191 (469)
+.+.. .| +..+..++.|.+|.+-.-.+|.+... -|+.|..+
T Consensus 205 V~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~V 272 (573)
T PLN00197 205 VVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQV 272 (573)
T ss_pred HHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEEe
Confidence 97630 12 12233478899999988888877654 36777554
No 31
>PLN02801 beta-amylase
Probab=96.72 E-value=0.0082 Score=63.48 Aligned_cols=106 Identities=18% Similarity=0.364 Sum_probs=81.0
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeec-C-----------CCCchh
Q 012181 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------FDLPQA 148 (469)
Q Consensus 81 ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-H-----------~~~P~~ 148 (469)
-.+..++.+|++|+..+-+.+=|--||+.+.+++| |.-|+++++.+++.|++..+.|. | ..+|+|
T Consensus 38 ~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~W 114 (517)
T PLN02801 38 GLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYD---WSAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPIPQW 114 (517)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHH
Confidence 35788999999999999999999999998779999 55599999999999998766663 3 469999
Q ss_pred HHhhh-----------CC----------------CCChhhHHHHHHHHHHHHHHhCCCceEEEEccCCc
Q 012181 149 LEDEY-----------GG----------------WINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPN 190 (469)
Q Consensus 149 l~~~~-----------gg----------------w~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~ 190 (469)
+.+.. .| +..+..++.+.+|-+-..++|.+...- -|+.|..
T Consensus 115 V~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~-~~I~eI~ 182 (517)
T PLN02801 115 VRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFLEA-GVIIDIE 182 (517)
T ss_pred HHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhccC-CeeEEEE
Confidence 97520 12 122334689999999998888775421 2445543
No 32
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=96.68 E-value=0.01 Score=59.68 Aligned_cols=100 Identities=13% Similarity=0.212 Sum_probs=63.0
Q ss_pred HHHHHHHcCCCEEEecc--ccccc-----ccCC-----C------CCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCc
Q 012181 85 DVKLMADTGLDAYRFSI--SWSRL-----IPNG-----R------GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (469)
Q Consensus 85 Di~l~~~lG~~~~R~si--~W~ri-----~P~~-----~------g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 146 (469)
=++..++-|+|.+|+.+ .|... .|.. + ..+|++.+++.+++|+.|.+.||+|.+.+.|. .|
T Consensus 35 yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg-~~ 113 (289)
T PF13204_consen 35 YLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFWG-CP 113 (289)
T ss_dssp HHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS-H-HH
T ss_pred HHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEEC-Cc
Confidence 37778999999999998 45443 1111 0 13899999999999999999999999887662 12
Q ss_pred hhHHhhhCCCCC---hhhHHHHHHHHHHHHHHhCCCc-eEEEEccCC
Q 012181 147 QALEDEYGGWIN---RTIVKDFTAYADVCFRQFGDRV-SYWTTVNEP 189 (469)
Q Consensus 147 ~~l~~~~ggw~~---~~~~~~f~~ya~~~~~~~gd~v-~~w~t~NEp 189 (469)
. . .|.|-. .-..+.-.+|.+.|++||+... ..|++-||-
T Consensus 114 ~---~-~~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 114 Y---V-PGTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp H---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred c---c-cccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 1 1 144432 3347788899999999999985 779999984
No 33
>PLN02705 beta-amylase
Probab=96.56 E-value=0.012 Score=63.41 Aligned_cols=107 Identities=15% Similarity=0.202 Sum_probs=81.0
Q ss_pred cChHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee-cC-----------CCCch
Q 012181 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-HH-----------FDLPQ 147 (469)
Q Consensus 80 ~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL-~H-----------~~~P~ 147 (469)
.-.+..++.||++|+..+-+.+=|--||+.+.+++| |..|+++++.+++.|++..+.| +| ..+|.
T Consensus 268 ~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~ 344 (681)
T PLN02705 268 EGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYV---WSGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISLPQ 344 (681)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccCCH
Confidence 446888999999999999999999999998779999 5559999999999999977666 34 36999
Q ss_pred hHHhhh-----------CC----------------CCChhhHHHHHHHHHHHHHHhCCCceEEEEccCCc
Q 012181 148 ALEDEY-----------GG----------------WINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPN 190 (469)
Q Consensus 148 ~l~~~~-----------gg----------------w~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~ 190 (469)
|+.+.. .| +..+..++.|.+|.+-.-++|.+...- -|+.|..
T Consensus 345 WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~-g~I~eI~ 413 (681)
T PLN02705 345 WVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFVE-GLITAVE 413 (681)
T ss_pred HHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhccC-CceeEEE
Confidence 997520 12 123334688889988888888764311 2555544
No 34
>PLN02905 beta-amylase
Probab=96.53 E-value=0.012 Score=63.49 Aligned_cols=110 Identities=13% Similarity=0.220 Sum_probs=83.4
Q ss_pred ccccChHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee-cC-----------CC
Q 012181 77 DGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-HH-----------FD 144 (469)
Q Consensus 77 d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL-~H-----------~~ 144 (469)
.+..-.+..++.||.+|+..+-+.+=|--||+.+++++| |..|+++++.+++.|++..+.| +| ..
T Consensus 283 ~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~Yd---WsgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~IP 359 (702)
T PLN02905 283 ADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYN---WNGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCIP 359 (702)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 455667889999999999999999999999998779999 5559999999999999977776 34 37
Q ss_pred CchhHHhhh-----------CC----------------CCChhhHHHHHHHHHHHHHHhCCCceEEEEccCCc
Q 012181 145 LPQALEDEY-----------GG----------------WINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPN 190 (469)
Q Consensus 145 ~P~~l~~~~-----------gg----------------w~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~ 190 (469)
+|.|+.+.. .| ...+..++.|.+|.+-..++|.+...- -|+.|..
T Consensus 360 LP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~-g~I~eI~ 431 (702)
T PLN02905 360 LPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFED-GVISMVE 431 (702)
T ss_pred CCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhcC-CceEEEE
Confidence 999987520 12 123345688888888888888664311 1455544
No 35
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.12 E-value=0.036 Score=55.62 Aligned_cols=92 Identities=15% Similarity=0.176 Sum_probs=61.4
Q ss_pred ccChHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCC---
Q 012181 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGG--- 155 (469)
Q Consensus 79 y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg--- 155 (469)
...++.|+++||++|+|++|++- .|. + ..+++.|-+.||-++.-+.....-.|-. .|-
T Consensus 35 ~~~~~~d~~l~k~~G~N~iR~~h-----~p~-----~-------~~~~~~cD~~GilV~~e~~~~~~~~~~~--~~~~~~ 95 (298)
T PF02836_consen 35 DEAMERDLELMKEMGFNAIRTHH-----YPP-----S-------PRFYDLCDELGILVWQEIPLEGHGSWQD--FGNCNY 95 (298)
T ss_dssp HHHHHHHHHHHHHTT-SEEEETT-----S-------S-------HHHHHHHHHHT-EEEEE-S-BSCTSSSS--TSCTSC
T ss_pred HHHHHHHHHHHHhcCcceEEccc-----ccC-----c-------HHHHHHHhhcCCEEEEeccccccCcccc--CCcccc
Confidence 45679999999999999999842 222 1 4677889999999887764321111110 010
Q ss_pred -CCChhhHHHHHHHHHHHHHHhCCC--ceEEEEccCC
Q 012181 156 -WINRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEP 189 (469)
Q Consensus 156 -w~~~~~~~~f~~ya~~~~~~~gd~--v~~w~t~NEp 189 (469)
-.+++..+.+.+-++..++++..+ |-.|.+.||+
T Consensus 96 ~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 96 DADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 125677888888889999999885 7779999997
No 36
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.10 E-value=0.016 Score=59.89 Aligned_cols=101 Identities=18% Similarity=0.266 Sum_probs=53.3
Q ss_pred HHcCCCEEEecc---c------------ccccc--cCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhh
Q 012181 90 ADTGLDAYRFSI---S------------WSRLI--PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDE 152 (469)
Q Consensus 90 ~~lG~~~~R~si---~------------W~ri~--P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~ 152 (469)
+.+|++.+|+.| + |.|.+ +..+|.+|+.+=+-=+-+++.++++|+..++ ++-+..|.|+..-
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT~N 135 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMTKN 135 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGSSS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHhcC
Confidence 358888999877 3 33322 1223666654434456689999999999877 4566788777532
Q ss_pred ---hCC-----CCChhhHHHHHHHHHHHHHHhC---CCceEEEEccCCcc
Q 012181 153 ---YGG-----WINRTIVKDFTAYADVCFRQFG---DRVSYWTTVNEPNA 191 (469)
Q Consensus 153 ---~gg-----w~~~~~~~~f~~ya~~~~~~~g---d~v~~w~t~NEp~~ 191 (469)
.|+ =+.++..+.|++|-..|+++|. =.+++-.++|||+.
T Consensus 136 G~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 136 GSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp SSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS
T ss_pred CCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC
Confidence 011 1356778999999999999993 36888889999983
No 37
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=95.00 E-value=0.14 Score=47.14 Aligned_cols=102 Identities=17% Similarity=0.315 Sum_probs=67.6
Q ss_pred cChHHHHHHHHHcCCCEEEecccccccc-----cCCC--CCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhh
Q 012181 80 HKYKEDVKLMADTGLDAYRFSISWSRLI-----PNGR--GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDE 152 (469)
Q Consensus 80 ~ry~eDi~l~~~lG~~~~R~si~W~ri~-----P~~~--g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~ 152 (469)
.+|+++++.|+++|++++=+- |+... |... +.+.....+....+++++.+.||++++.|+. -|.|...
T Consensus 20 ~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~~- 94 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWDQ- 94 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhhc-
Confidence 457999999999999987433 44333 2210 1223344578999999999999999999964 3555542
Q ss_pred hCCCCChh-hHHHHHHHHHHHHHHhCCC--ceEEEEccCCc
Q 012181 153 YGGWINRT-IVKDFTAYADVCFRQFGDR--VSYWTTVNEPN 190 (469)
Q Consensus 153 ~ggw~~~~-~~~~f~~ya~~~~~~~gd~--v~~w~t~NEp~ 190 (469)
.+.+ -++.=..-++.+.++||.+ +.-|..-.|+.
T Consensus 95 ----~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 95 ----GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred ----cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 2211 2233345677788888875 44477777765
No 38
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.96 E-value=0.14 Score=55.87 Aligned_cols=109 Identities=16% Similarity=0.181 Sum_probs=86.4
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee--------cCCCCchhHHhh
Q 012181 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL--------HHFDLPQALEDE 152 (469)
Q Consensus 81 ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL--------~H~~~P~~l~~~ 152 (469)
.|++=++.+|++|+|+.-.=+.|.--||.+ |++|.+|.-=..++|+.+.++|+-+++=+ .+-.+|.||...
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~-g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~ 128 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPSP-GKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRNV 128 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCCC-CcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhhC
Confidence 367779999999999999999999999998 99999998778889999999998866644 366799999764
Q ss_pred hCCCC---ChhhHHHHHHHHHHHHHHh-------CCCceEEEEccCCc
Q 012181 153 YGGWI---NRTIVKDFTAYADVCFRQF-------GDRVSYWTTVNEPN 190 (469)
Q Consensus 153 ~ggw~---~~~~~~~f~~ya~~~~~~~-------gd~v~~w~t~NEp~ 190 (469)
.|.-. |+.+..+..+|.+.++... |.-|-.-.+=||-.
T Consensus 129 pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 129 PGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred CceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 33322 6778889999999988843 33455556777755
No 39
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=92.99 E-value=0.39 Score=56.47 Aligned_cols=93 Identities=14% Similarity=0.083 Sum_probs=63.0
Q ss_pred ccChHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCC
Q 012181 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWIN 158 (469)
Q Consensus 79 y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~ 158 (469)
...+++||++||++|+|++|+| -.|.. ..+.+.|-+.||-++--..-.....+.... ...+
T Consensus 370 ~e~~~~di~lmK~~g~NaVR~s-----HyP~~------------p~fydlcDe~GilV~dE~~~e~hg~~~~~~--~~~d 430 (1027)
T PRK09525 370 EETMVQDILLMKQHNFNAVRCS-----HYPNH------------PLWYELCDRYGLYVVDEANIETHGMVPMNR--LSDD 430 (1027)
T ss_pred HHHHHHHHHHHHHCCCCEEEec-----CCCCC------------HHHHHHHHHcCCEEEEecCccccCCccccC--CCCC
Confidence 4567899999999999999995 23322 345688899999887664211111000000 1124
Q ss_pred hhhHHHHHHHHHHHHHHhCCC--ceEEEEccCCc
Q 012181 159 RTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPN 190 (469)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~gd~--v~~w~t~NEp~ 190 (469)
++..+.+.+=++..++|.+.+ |-.|...||+.
T Consensus 431 p~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 431 PRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 566677777788899999886 66799999974
No 40
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=92.09 E-value=0.92 Score=51.78 Aligned_cols=91 Identities=15% Similarity=0.142 Sum_probs=67.1
Q ss_pred CccccChHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCC
Q 012181 76 CDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGG 155 (469)
Q Consensus 76 ~d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg 155 (469)
+-.+..+..|+++||++|+|++|.| =.|+. ..+.+.|-+.||-++=...+.. .|+
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~------------~~~ydLcDelGllV~~Ea~~~~--------~~~ 371 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS-----HYPNS------------EEFYDLCDELGLLVIDEAMIET--------HGM 371 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC------------HHHHHHHHHhCcEEEEecchhh--------cCC
Confidence 3445668999999999999999998 33442 5667888899998886654321 233
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCC--ceEEEEccCCcc
Q 012181 156 WINRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPNA 191 (469)
Q Consensus 156 w~~~~~~~~f~~ya~~~~~~~gd~--v~~w~t~NEp~~ 191 (469)
...++..+...+=++..+++-+.+ |-.|..-||.+.
T Consensus 372 ~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~~ 409 (808)
T COG3250 372 PDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESGH 409 (808)
T ss_pred CCCcchhHHHHHHHHHHHHhccCCCcEEEEeccccccC
Confidence 455666677777788888988775 667999999663
No 41
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=91.34 E-value=0.77 Score=54.02 Aligned_cols=89 Identities=16% Similarity=0.221 Sum_probs=62.2
Q ss_pred ccChHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee----cCCCCchhHHhhhC
Q 012181 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL----HHFDLPQALEDEYG 154 (469)
Q Consensus 79 y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL----~H~~~P~~l~~~~g 154 (469)
...+++|+++||++|+|++|+|. .|.. ..+.+.|-+.||-++--. |.|.....+
T Consensus 354 ~e~~~~dl~lmK~~g~NavR~sH-----yP~~------------~~fydlcDe~GllV~dE~~~e~~g~~~~~~~----- 411 (1021)
T PRK10340 354 MDRVEKDIQLMKQHNINSVRTAH-----YPND------------PRFYELCDIYGLFVMAETDVESHGFANVGDI----- 411 (1021)
T ss_pred HHHHHHHHHHHHHCCCCEEEecC-----CCCC------------HHHHHHHHHCCCEEEECCcccccCccccccc-----
Confidence 45789999999999999999962 4442 356788999999877653 112111000
Q ss_pred CC--CChhhHHHHHHHHHHHHHHhCCC--ceEEEEccCC
Q 012181 155 GW--INRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEP 189 (469)
Q Consensus 155 gw--~~~~~~~~f~~ya~~~~~~~gd~--v~~w~t~NEp 189 (469)
.+ .+++..+.|.+=++.++++.+.+ |-.|..-||.
T Consensus 412 ~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~ 450 (1021)
T PRK10340 412 SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNES 450 (1021)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 11 23445567777788999999886 6679999996
No 42
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=88.92 E-value=3.6 Score=41.35 Aligned_cols=87 Identities=22% Similarity=0.410 Sum_probs=62.3
Q ss_pred ccChHHHHHHHHHcCCCEEEecc---cccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCC
Q 012181 79 YHKYKEDVKLMADTGLDAYRFSI---SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGG 155 (469)
Q Consensus 79 y~ry~eDi~l~~~lG~~~~R~si---~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg 155 (469)
..||.+-.+++++.|||..-+.= .-..+ ..+.++-+.++-+.++.+||++.+++. |.-|.-+ ||
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~L--------t~~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l----gg 122 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKLL--------TPEYLDKVARLADVFRPYGIKVYLSVN-FASPIEL----GG 122 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGGG--------STTTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----TS
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhhc--------CHHHHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----CC
Confidence 46888999999999999876431 22222 233488889999999999999999974 7778654 55
Q ss_pred C-----CChhhHHHHHHHHHHHHHHhCC
Q 012181 156 W-----INRTIVKDFTAYADVCFRQFGD 178 (469)
Q Consensus 156 w-----~~~~~~~~f~~ya~~~~~~~gd 178 (469)
. ++++++.+|.+=++.+.+...|
T Consensus 123 L~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 123 LPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp -S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4 3788999999999999999866
No 43
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=87.51 E-value=3.2 Score=42.02 Aligned_cols=89 Identities=17% Similarity=0.208 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChh
Q 012181 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRT 160 (469)
Q Consensus 81 ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~ 160 (469)
-.+.|+.+||+||+|++|+= .|-|+. | .+..++.|.+.||-++++|.-. ..-+ .+...|. .=
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY----~vdp~~----n------Hd~CM~~~~~aGIYvi~Dl~~p--~~sI-~r~~P~~-sw 115 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVY----SVDPSK----N------HDECMSAFADAGIYVILDLNTP--NGSI-NRSDPAP-SW 115 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TTS------------HHHHHHHHHTT-EEEEES-BT--TBS---TTS------
T ss_pred HHHHhHHHHHHcCCCEEEEE----EeCCCC----C------HHHHHHHHHhCCCEEEEecCCC--Cccc-cCCCCcC-CC
Confidence 45899999999999999973 334443 2 7889999999999999999432 1122 1111111 01
Q ss_pred hHHHHHHHHHHHHHHhCC--CceEEEEccC
Q 012181 161 IVKDFTAYADVCFRQFGD--RVSYWTTVNE 188 (469)
Q Consensus 161 ~~~~f~~ya~~~~~~~gd--~v~~w~t~NE 188 (469)
....|.+|... ++.|.. .+--+..=||
T Consensus 116 ~~~l~~~~~~v-id~fa~Y~N~LgFf~GNE 144 (314)
T PF03198_consen 116 NTDLLDRYFAV-IDAFAKYDNTLGFFAGNE 144 (314)
T ss_dssp -HHHHHHHHHH-HHHHTT-TTEEEEEEEES
T ss_pred CHHHHHHHHHH-HHHhccCCceEEEEecce
Confidence 23455565444 444443 3555666666
No 44
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=86.94 E-value=1.4 Score=45.90 Aligned_cols=99 Identities=16% Similarity=0.279 Sum_probs=71.9
Q ss_pred HHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCC--hhhHHHHH
Q 012181 89 MADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWIN--RTIVKDFT 166 (469)
Q Consensus 89 ~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~--~~~~~~f~ 166 (469)
-+|+|++-.|.---|.=++.. =-++ +.++++++|.+.+.|+.-+.+-.||..+.-....+.+=.. ....+.++
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~--~~~~---~t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~~ 88 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQK--LFYP---FTYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLIA 88 (428)
T ss_pred hhhhceeeehhcceeeeeecc--ccCC---hHHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHHH
Confidence 468999999988888822222 2356 7789999999999997777777788777554432222222 24679999
Q ss_pred HHHHHHHHHhCCC-ceEE--EEccCCccc
Q 012181 167 AYADVCFRQFGDR-VSYW--TTVNEPNAF 192 (469)
Q Consensus 167 ~ya~~~~~~~gd~-v~~w--~t~NEp~~~ 192 (469)
.|+..|+.++|-+ |.-| +.+||||..
T Consensus 89 ~fl~h~~~~vg~e~v~kw~f~~~~~pn~~ 117 (428)
T COG3664 89 AFLKHVIRRVGVEFVRKWPFYSPNEPNLL 117 (428)
T ss_pred HHHHHHHHHhChhheeecceeecCCCCcc
Confidence 9999999999963 4444 699999965
No 45
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=86.59 E-value=5.4 Score=40.78 Aligned_cols=110 Identities=17% Similarity=0.435 Sum_probs=61.0
Q ss_pred ccChHHHHHHHHHcCCCEEEecc----cccccccCC--------------------------C--CCCC----hhhHHHH
Q 012181 79 YHKYKEDVKLMADTGLDAYRFSI----SWSRLIPNG--------------------------R--GPVN----PKGLQYY 122 (469)
Q Consensus 79 y~ry~eDi~l~~~lG~~~~R~si----~W~ri~P~~--------------------------~--g~~n----~~~~~~y 122 (469)
|.||++.|+.|+--|||.-=--+ -|.|+.-+- . |.+. .+-.+.=
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq 97 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQ 97 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHH
Confidence 68899999999999999654222 244444332 0 2211 2224556
Q ss_pred HHHHHHHHHcCCcceEeecCCCCchhHHhhh--------CCCC---Ch----hhHHHHHHHHHHH----HHHhCCCceEE
Q 012181 123 NNLINELISYGIQPHVTLHHFDLPQALEDEY--------GGWI---NR----TIVKDFTAYADVC----FRQFGDRVSYW 183 (469)
Q Consensus 123 ~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~--------ggw~---~~----~~~~~f~~ya~~~----~~~~gd~v~~w 183 (469)
+++++++++.||+|++--+---.|..|.+++ |.|. .+ ..-..|.+.++.. .+.|| .-.++
T Consensus 98 ~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P~dplF~~i~~~F~~~q~~~yG-~~~~Y 176 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDPTDPLFAEIAKLFYEEQIKLYG-TDHIY 176 (333)
T ss_dssp HHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-SS--HHHHHHHHHHHHHHHHH----SEE
T ss_pred HHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCCCCchHHHHHHHHHHHHHHhcC-CCcee
Confidence 8999999999999999988777898887765 2233 21 1235666666555 55688 45555
Q ss_pred E--EccCC
Q 012181 184 T--TVNEP 189 (469)
Q Consensus 184 ~--t~NEp 189 (469)
. +|||-
T Consensus 177 ~~D~FnE~ 184 (333)
T PF05089_consen 177 AADPFNEG 184 (333)
T ss_dssp E--TTTTS
T ss_pred CCCccCCC
Confidence 3 89993
No 46
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.34 E-value=3.8 Score=43.58 Aligned_cols=111 Identities=18% Similarity=0.409 Sum_probs=73.5
Q ss_pred ccChHHHHHHHHHcCCCEEEec----ccccccccCCC----------------------------CCCChh----hHHHH
Q 012181 79 YHKYKEDVKLMADTGLDAYRFS----ISWSRLIPNGR----------------------------GPVNPK----GLQYY 122 (469)
Q Consensus 79 y~ry~eDi~l~~~lG~~~~R~s----i~W~ri~P~~~----------------------------g~~n~~----~~~~y 122 (469)
|.+|+..|+-|+-.|+|..=.. +.|-+|+-.-. |...++ -+-.=
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 6889999999999999976533 24555554320 222211 12234
Q ss_pred HHHHHHHHHcCCcceEeecCCCCchhHHhhh--------CCCC---------------ChhhHHHHHHHHHHHHHHhCCC
Q 012181 123 NNLINELISYGIQPHVTLHHFDLPQALEDEY--------GGWI---------------NRTIVKDFTAYADVCFRQFGDR 179 (469)
Q Consensus 123 ~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~--------ggw~---------------~~~~~~~f~~ya~~~~~~~gd~ 179 (469)
+++|+.+++-||+|++--+---.|..|..-+ +.|. .|-+++-=..|-+...+.||+-
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~ 236 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGV 236 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCc
Confidence 6899999999999999888777888886422 2222 2234455566778889999973
Q ss_pred ceEE--EEccCC
Q 012181 180 VSYW--TTVNEP 189 (469)
Q Consensus 180 v~~w--~t~NEp 189 (469)
-..+ -||||.
T Consensus 237 tniy~~DpFNE~ 248 (666)
T KOG2233|consen 237 TNIYSADPFNEI 248 (666)
T ss_pred ccccccCccccc
Confidence 3334 399994
No 47
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=84.46 E-value=0.48 Score=50.06 Aligned_cols=108 Identities=16% Similarity=0.109 Sum_probs=78.5
Q ss_pred HHHHHHHHHcCCCEEEecccc-cccccCCCCCCChhh-HHHHHHHHHHHHHcCCcceEeec----CCCCchhHHhhhCC-
Q 012181 83 KEDVKLMADTGLDAYRFSISW-SRLIPNGRGPVNPKG-LQYYNNLINELISYGIQPHVTLH----HFDLPQALEDEYGG- 155 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W-~ri~P~~~g~~n~~~-~~~y~~~i~~l~~~gi~p~vtL~----H~~~P~~l~~~~gg- 155 (469)
+.|++.++.+|++..|++|-= ...--+. |..|.+. +.+..-+++.+...+|+.++||. |+.--.|...=.|+
T Consensus 29 ~~dle~a~~vg~k~lR~fiLDgEdc~d~~-G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag~~ 107 (587)
T COG3934 29 KADLEPAGFVGVKDLRLFILDGEDCRDKE-GYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAGEQ 107 (587)
T ss_pred hcccccccCccceeEEEEEecCcchhhhh-ceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCCCC
Confidence 678999999999999999632 2222233 7777766 89999999999999999999985 43322222110011
Q ss_pred -----CCChhhHHHHHHHHHHHHHHhCCCceE--EEEccCCcc
Q 012181 156 -----WINRTIVKDFTAYADVCFRQFGDRVSY--WTTVNEPNA 191 (469)
Q Consensus 156 -----w~~~~~~~~f~~ya~~~~~~~gd~v~~--w~t~NEp~~ 191 (469)
...+....-|.+|++.+++.|+..+.. |+.-|||-+
T Consensus 108 ~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 108 SPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 124556778999999999999887555 999999766
No 48
>smart00642 Aamy Alpha-amylase domain.
Probab=80.90 E-value=4.3 Score=37.25 Aligned_cols=62 Identities=16% Similarity=0.300 Sum_probs=42.9
Q ss_pred ccChHHHHHHHHHcCCCEEEeccccccccc--CCCC-------CCCh--hhHHHHHHHHHHHHHcCCcceEee
Q 012181 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIP--NGRG-------PVNP--KGLQYYNNLINELISYGIQPHVTL 140 (469)
Q Consensus 79 y~ry~eDi~l~~~lG~~~~R~si~W~ri~P--~~~g-------~~n~--~~~~~y~~~i~~l~~~gi~p~vtL 140 (469)
+....+-++.++++|++++-++=-+..... ...| .+|+ -..+-++++|++++++||++++.+
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~ 90 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDV 90 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 444467788999999999988765544431 1101 1111 134668999999999999999986
No 49
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=77.57 E-value=27 Score=40.04 Aligned_cols=100 Identities=22% Similarity=0.383 Sum_probs=65.3
Q ss_pred cCCCEEEeccc-ccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCC---CCchhHHhh---------------
Q 012181 92 TGLDAYRFSIS-WSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHF---DLPQALEDE--------------- 152 (469)
Q Consensus 92 lG~~~~R~si~-W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l~~~--------------- 152 (469)
+=+.++++++. |.+ ....=.+|+.-+---+.||+.|++.||+.++.+... |.|+--+..
T Consensus 294 IP~d~~~lD~~~~~~--~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~~ 371 (772)
T COG1501 294 IPLDVFVLDIDFWMD--NWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIYQ 371 (772)
T ss_pred CcceEEEEeehhhhc--cccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEee
Confidence 44678999995 887 222234555555556799999999999999888642 333221111
Q ss_pred ---------hCCCCChhhHHHHHHHHHHHHHHhCCCceEEEEccCCccccc
Q 012181 153 ---------YGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFAN 194 (469)
Q Consensus 153 ---------~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~ 194 (469)
+-.++||+.+++|.+....-+..+| -.-+|.=+|||.+...
T Consensus 372 ~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~G-v~g~W~D~nEp~~~~~ 421 (772)
T COG1501 372 ADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLG-VDGFWNDMNEPEPFDG 421 (772)
T ss_pred ecccCCcccccCCCCHHHHHHHHHHHHhHHHhcC-ccEEEccCCCCccccc
Confidence 0126799999999974333344444 3556889999997653
No 50
>PLN00196 alpha-amylase; Provisional
Probab=77.33 E-value=5.9 Score=42.14 Aligned_cols=65 Identities=15% Similarity=0.180 Sum_probs=43.9
Q ss_pred ccChHHHHHHHHHcCCCEEEecccccccccCCC-----CCCCh---hhHHHHHHHHHHHHHcCCcceEee--cCC
Q 012181 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR-----GPVNP---KGLQYYNNLINELISYGIQPHVTL--HHF 143 (469)
Q Consensus 79 y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~-----g~~n~---~~~~~y~~~i~~l~~~gi~p~vtL--~H~ 143 (469)
|....+.+..+++||++++=++=......+.+= -.+|. -.-+=++++|++++++||++|++. .|-
T Consensus 43 ~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~ 117 (428)
T PLN00196 43 YNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHR 117 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCc
Confidence 455588899999999999988754433222210 01221 112458999999999999999985 553
No 51
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=73.80 E-value=14 Score=37.60 Aligned_cols=96 Identities=18% Similarity=0.321 Sum_probs=64.3
Q ss_pred hHHHHHHHHHcCCCEEEecccc-------cccccCCC---CC-CChhhHHHHHHHHHHHHHcCCcceEee----c-----
Q 012181 82 YKEDVKLMADTGLDAYRFSISW-------SRLIPNGR---GP-VNPKGLQYYNNLINELISYGIQPHVTL----H----- 141 (469)
Q Consensus 82 y~eDi~l~~~lG~~~~R~si~W-------~ri~P~~~---g~-~n~~~~~~y~~~i~~l~~~gi~p~vtL----~----- 141 (469)
.++-++.|+++|+|++=+.+.+ |.++|... |. ....+++-+..+|++++++||+...-+ .
T Consensus 21 ~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~~~~ 100 (311)
T PF02638_consen 21 IDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAPDVS 100 (311)
T ss_pred HHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCCchh
Confidence 4777899999999987665543 34444321 11 111357789999999999999987444 1
Q ss_pred C--CCCchhHHhh-------h----CC--CC---ChhhHHHHHHHHHHHHHHhC
Q 012181 142 H--FDLPQALEDE-------Y----GG--WI---NRTIVKDFTAYADVCFRQFG 177 (469)
Q Consensus 142 H--~~~P~~l~~~-------~----gg--w~---~~~~~~~f~~ya~~~~~~~g 177 (469)
| -..|.|+... + |+ |+ +|++.+...+-++.++++|.
T Consensus 101 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 101 HILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred hhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1 1356665421 1 11 45 45788899999999999995
No 52
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=73.33 E-value=17 Score=36.60 Aligned_cols=104 Identities=17% Similarity=0.266 Sum_probs=71.7
Q ss_pred HHHHHHHHHcCCC--EEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCc---hhHH-------
Q 012181 83 KEDVKLMADTGLD--AYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP---QALE------- 150 (469)
Q Consensus 83 ~eDi~l~~~lG~~--~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P---~~l~------- 150 (469)
.+-++.+++.|+. ++=+.+.|..-. ++=.+|.+-+--..++++.|++.|+++++.+.-+-.+ ..-+
T Consensus 33 ~~~~~~~~~~~iP~d~i~iD~~w~~~~--g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g~~ 110 (303)
T cd06592 33 LNYAQEIIDNGFPNGQIEIDDNWETCY--GDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKGYL 110 (303)
T ss_pred HHHHHHHHHcCCCCCeEEeCCCccccC--CccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCCeE
Confidence 5667888899964 666777785321 2124566666668899999999999999877543221 1111
Q ss_pred --hhhC----------C------CCChhhHHHHHHHHHHHHHHhCCCceE-EEEccCCc
Q 012181 151 --DEYG----------G------WINRTIVKDFTAYADVCFRQFGDRVSY-WTTVNEPN 190 (469)
Q Consensus 151 --~~~g----------g------w~~~~~~~~f~~ya~~~~~~~gd~v~~-w~t~NEp~ 190 (469)
+..| | ++||+.++.|.+..+.+....| |+. |+=+|||.
T Consensus 111 vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G--vdg~w~D~~E~~ 167 (303)
T cd06592 111 VSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYG--IDSFKFDAGEAS 167 (303)
T ss_pred EECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhC--CcEEEeCCCCcc
Confidence 0011 1 6699999999999998887776 555 68999997
No 53
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=69.25 E-value=29 Score=35.17 Aligned_cols=107 Identities=15% Similarity=0.213 Sum_probs=67.1
Q ss_pred HHHHHHHHHcCCC--EEEecccccccccCC----CCCCChhhHHHHHHHHHHHHHcCCcceEeecCC---CCchhHHhhh
Q 012181 83 KEDVKLMADTGLD--AYRFSISWSRLIPNG----RGPVNPKGLQYYNNLINELISYGIQPHVTLHHF---DLPQALEDEY 153 (469)
Q Consensus 83 ~eDi~l~~~lG~~--~~R~si~W~ri~P~~----~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l~~~~ 153 (469)
.+-++.+++.|+. ++=+++.|....... .=.+|.+-+---+++|+.|+++|++.++.++.+ +.|..-+.+.
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~ 106 (317)
T cd06598 27 DDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVK 106 (317)
T ss_pred HHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHh
Confidence 4556777777765 555666675443311 123455555556889999999999999888654 3333211110
Q ss_pred C-------------------------CCCChhhHHHHHHHHHHHHHHhCCCceE-EEEccCCccc
Q 012181 154 G-------------------------GWINRTIVKDFTAYADVCFRQFGDRVSY-WTTVNEPNAF 192 (469)
Q Consensus 154 g-------------------------gw~~~~~~~~f~~ya~~~~~~~gd~v~~-w~t~NEp~~~ 192 (469)
. .++||+..+.|.+..+.+ .. .-|+. |.=+|||..+
T Consensus 107 ~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-~~--~Gvdg~w~D~~Ep~~~ 168 (317)
T cd06598 107 AGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-ID--QGVTGWWGDLGEPEVH 168 (317)
T ss_pred CCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-hh--CCccEEEecCCCcccc
Confidence 0 255899999998877665 23 34555 7899999754
No 54
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=68.03 E-value=26 Score=35.93 Aligned_cols=109 Identities=13% Similarity=0.077 Sum_probs=64.8
Q ss_pred HHHHHHHHHcCCCE--EEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCC-----chhHHhh---
Q 012181 83 KEDVKLMADTGLDA--YRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDL-----PQALEDE--- 152 (469)
Q Consensus 83 ~eDi~l~~~lG~~~--~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~-----P~~l~~~--- 152 (469)
.+-++.+++.|+.. +=+.+.|..-. +.=.+|++-+---+++|+.|++.|++.++.++.+-. |..-..+
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~~~--~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g 104 (339)
T cd06603 27 KEVDAGFDEHDIPYDVIWLDIEHTDGK--RYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKG 104 (339)
T ss_pred HHHHHHHHHcCCCceEEEEChHHhCCC--CceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCC
Confidence 45556666666553 33333332100 001234444444578999999999998888765532 2211111
Q ss_pred ---------------------hCCCCChhhHHHHHHHHHHHHHHhCC-CceEEEEccCCcccc
Q 012181 153 ---------------------YGGWINRTIVKDFTAYADVCFRQFGD-RVSYWTTVNEPNAFA 193 (469)
Q Consensus 153 ---------------------~ggw~~~~~~~~f~~ya~~~~~~~gd-~v~~w~t~NEp~~~~ 193 (469)
+-.+.||+.++.|.+..+.+....+. -.-+|+=+|||.++.
T Consensus 105 ~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 105 YLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred eEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccCCccccC
Confidence 01266999999999888877654332 346789999998653
No 55
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=67.70 E-value=31 Score=33.67 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHcCCcceEeecC--------------CCCchhHHhh----------------hCC----CCChhh---
Q 012181 119 LQYYNNLINELISYGIQPHVTLHH--------------FDLPQALEDE----------------YGG----WINRTI--- 161 (469)
Q Consensus 119 ~~~y~~~i~~l~~~gi~p~vtL~H--------------~~~P~~l~~~----------------~gg----w~~~~~--- 161 (469)
-+.++.+|+.-+++|.++|+||.= ...|.|=..+ .++ ..+|.+
T Consensus 23 g~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~ 102 (239)
T PF12891_consen 23 GDVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDN 102 (239)
T ss_dssp THHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSS
T ss_pred HHHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCcc
Confidence 367899999999999999999841 1112111000 001 113320
Q ss_pred HHHHHHHHHHHHHHhCCC-----ceEEEEccCCcccc
Q 012181 162 VKDFTAYADVCFRQFGDR-----VSYWTTVNEPNAFA 193 (469)
Q Consensus 162 ~~~f~~ya~~~~~~~gd~-----v~~w~t~NEp~~~~ 193 (469)
...-.+++..+..+||.. |++|..=|||.+..
T Consensus 103 ~~y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~ 139 (239)
T PF12891_consen 103 PVYMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWH 139 (239)
T ss_dssp EEEHHHHHHHHHHHH--TTSTTS--EEEESS-GGGHH
T ss_pred HhHHHHHHHHHHHHHhccccCCCceEEEecCchHhhc
Confidence 012344466677777665 99999999999753
No 56
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=66.45 E-value=32 Score=34.94 Aligned_cols=106 Identities=12% Similarity=0.122 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCC--EEEecccccccccCC--CCCCChhhHHHHHHHHHHHHHcCCcceEeecCCC---CchhHHhh---
Q 012181 83 KEDVKLMADTGLD--AYRFSISWSRLIPNG--RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFD---LPQALEDE--- 152 (469)
Q Consensus 83 ~eDi~l~~~lG~~--~~R~si~W~ri~P~~--~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~---~P~~l~~~--- 152 (469)
.+-++.+++.|+. ++=+.+.|.. ..+ .=.+|.+-+---+++|+.|+++|+++++.++-+- .+.+-..+
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~--~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g 104 (319)
T cd06591 27 LDVAKEYRKRGIPLDVIVQDWFYWP--KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKG 104 (319)
T ss_pred HHHHHHHHHhCCCccEEEEechhhc--CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCC
Confidence 4556667766555 4433333321 111 1234555555578999999999999888764331 12111110
Q ss_pred --------------------hCCCCChhhHHHHHHHHHHHHHHhCCCce-EEEEccCCccc
Q 012181 153 --------------------YGGWINRTIVKDFTAYADVCFRQFGDRVS-YWTTVNEPNAF 192 (469)
Q Consensus 153 --------------------~ggw~~~~~~~~f~~ya~~~~~~~gd~v~-~w~t~NEp~~~ 192 (469)
.-.|+||+.++.|.+..+..+...| |+ +|+=+|||..+
T Consensus 105 ~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G--vdg~w~D~~Ep~~~ 163 (319)
T cd06591 105 YLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKG--VDAWWLDAAEPEYS 163 (319)
T ss_pred EEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCC--CcEEEecCCCCCcc
Confidence 0125688888888766555444444 55 47899999864
No 57
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=64.66 E-value=19 Score=35.40 Aligned_cols=78 Identities=21% Similarity=0.211 Sum_probs=56.5
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhh
Q 012181 83 KEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTI 161 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~ 161 (469)
.+|++...+.|++.+|+.++.|.+.-... +.-.+++++...++++.+++.|+++.+++.. .+ +..
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~---~~~ 137 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAED-----------AS---RAD 137 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeecc-----------CC---CCC
Confidence 78999999999999999998876643321 3334577889999999999999988766521 12 223
Q ss_pred HHHHHHHHHHHHH
Q 012181 162 VKDFTAYADVCFR 174 (469)
Q Consensus 162 ~~~f~~ya~~~~~ 174 (469)
.+...+.++.+.+
T Consensus 138 ~~~~~~~~~~~~~ 150 (259)
T cd07939 138 PDFLIEFAEVAQE 150 (259)
T ss_pred HHHHHHHHHHHHH
Confidence 5666666666654
No 58
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=64.52 E-value=34 Score=35.12 Aligned_cols=106 Identities=17% Similarity=0.134 Sum_probs=63.5
Q ss_pred HHHHHHHHHcCCCE--EEecccccccccCCCCCCChhhHHHH--HHHHHHHHHcCCcceEeecCCCCch--------hHH
Q 012181 83 KEDVKLMADTGLDA--YRFSISWSRLIPNGRGPVNPKGLQYY--NNLINELISYGIQPHVTLHHFDLPQ--------ALE 150 (469)
Q Consensus 83 ~eDi~l~~~lG~~~--~R~si~W~ri~P~~~g~~n~~~~~~y--~~~i~~l~~~gi~p~vtL~H~~~P~--------~l~ 150 (469)
.+-++.+++.|+.. +=+.+.|..- .++=.+|.+.+--- ++||+.|++.|++.++.++-+-.+. +-.
T Consensus 27 ~~~~~~~r~~~iP~d~i~lD~~~~~~--~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e 104 (339)
T cd06602 27 KEVVENMRAAGIPLDVQWNDIDYMDR--RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPYDR 104 (339)
T ss_pred HHHHHHHHHhCCCcceEEECcccccC--ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHH
Confidence 45566667666653 3344455422 11122343333334 8899999999999888876553331 111
Q ss_pred hh-h-----------------------CCCCChhhHHHHHHHHHHHHHHhCCCceEEEEccCCcc
Q 012181 151 DE-Y-----------------------GGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (469)
Q Consensus 151 ~~-~-----------------------ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 191 (469)
.. . -.++||+.++.|.+..+.++..+| ---+|.=+|||..
T Consensus 105 ~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G-vdg~w~D~~Ep~~ 168 (339)
T cd06602 105 GLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVP-FDGLWIDMNEPSN 168 (339)
T ss_pred HHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCC-CcEEEecCCCCch
Confidence 00 0 126689999998887777666655 2345789999974
No 59
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=63.40 E-value=33 Score=36.12 Aligned_cols=119 Identities=16% Similarity=0.305 Sum_probs=76.2
Q ss_pred cCCCCCCCeeeeecccccccCccCCCCCCCcccceecccCcccCCCcccCccccChHHHHHHHHHcCCCEEEecc--ccc
Q 012181 27 KNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHAGNVHGTGDIACDGYHKYKEDVKLMADTGLDAYRFSI--SWS 104 (469)
Q Consensus 27 ~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si--~W~ 104 (469)
.+..| .|+.+|++.| =|.+-..|-..|..+. .+|++.+.++.--..|+++ .|.
T Consensus 42 ~is~p---~W~~~~gGtr-fg~fpg~g~~R~~~E~---------------------i~D~~~v~~Lt~~~~~v~LH~~wd 96 (412)
T TIGR02629 42 FVAVP---SWGVGTGGTR-FARFPGTGEPRGIFDK---------------------LEDCAVIQQLTRATPNVSLHIPWD 96 (412)
T ss_pred ceeee---ccccCCCCcc-cCcCCCCCCCCCHHHH---------------------HHHHHHHHhhcCCCCCccccCCCC
Confidence 44566 7999888888 5544333334454433 6888888888777667666 782
Q ss_pred ccccCCCCCCChhhHHHHHHHHHHHHHcCCcce-EeecCCCCchh--HHhhhCCCCCh--hhHHHHHHHHHHH---HHHh
Q 012181 105 RLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQA--LEDEYGGWINR--TIVKDFTAYADVC---FRQF 176 (469)
Q Consensus 105 ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~--l~~~~ggw~~~--~~~~~f~~ya~~~---~~~~ 176 (469)
. +|.+.++ +.++++||..- +...-|..|+- -.-++|...|| ++.+...+-+..| .+..
T Consensus 97 ~--------vD~~elk------~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSLtnPD~~VR~~AIeh~~~~i~Ig~el 162 (412)
T TIGR02629 97 K--------ADPKELK------ARGSALGLGFDAMNSNTFSDAPGQAHSYKFGSLSHTDAATRRQAVEHNLECIEIGKAL 162 (412)
T ss_pred c--------CCHHHHH------HHHHHcCCccceeccccccCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 2 3644444 89999999988 77766877732 11235778876 4566667766655 5566
Q ss_pred CCC-ceEEE
Q 012181 177 GDR-VSYWT 184 (469)
Q Consensus 177 gd~-v~~w~ 184 (469)
|.+ |..|+
T Consensus 163 Gs~~v~IW~ 171 (412)
T TIGR02629 163 GSKALTVWI 171 (412)
T ss_pred CCCeeEEEC
Confidence 653 44454
No 60
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=62.79 E-value=21 Score=35.74 Aligned_cols=81 Identities=12% Similarity=0.080 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhh
Q 012181 83 KEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTI 161 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~ 161 (469)
+.|++.+++.|++.+++.++=|...-... +.--++.++...++++.+++.|+++.+++-+|+.|- +..
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~-----------r~~ 145 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM-----------RDS 145 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-----------cCC
Confidence 67999999999999999986554444321 344577899999999999999999999998775542 122
Q ss_pred HHHHHHHHHHHHH
Q 012181 162 VKDFTAYADVCFR 174 (469)
Q Consensus 162 ~~~f~~ya~~~~~ 174 (469)
++.+.++++.+.+
T Consensus 146 ~~~~~~~~~~~~~ 158 (280)
T cd07945 146 PDYVFQLVDFLSD 158 (280)
T ss_pred HHHHHHHHHHHHH
Confidence 5667777777654
No 61
>PLN02361 alpha-amylase
Probab=62.08 E-value=17 Score=38.34 Aligned_cols=64 Identities=16% Similarity=0.302 Sum_probs=44.9
Q ss_pred ccccChHHHHHHHHHcCCCEEEecccccccccCCCC-----CCCh--hhHHHHHHHHHHHHHcCCcceEee
Q 012181 77 DGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRG-----PVNP--KGLQYYNNLINELISYGIQPHVTL 140 (469)
Q Consensus 77 d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g-----~~n~--~~~~~y~~~i~~l~~~gi~p~vtL 140 (469)
.+|....+-++.+++||++++=++=...-.-+.+=. .+|. -..+-++++|++|+++||++|+.+
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 478888999999999999999776544332222100 0111 123458999999999999999985
No 62
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=61.90 E-value=30 Score=35.50 Aligned_cols=105 Identities=11% Similarity=0.173 Sum_probs=58.2
Q ss_pred HHHHHHcCCC--EEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCC-CCchhHHh--hhCCCCChh
Q 012181 86 VKLMADTGLD--AYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHF-DLPQALED--EYGGWINRT 160 (469)
Q Consensus 86 i~l~~~lG~~--~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~-~~P~~l~~--~~ggw~~~~ 160 (469)
++.+++.+|. ++=+.|.|..- .+.-.+|++.+---+++++.|++.|++.++.++-+ ..-..+.. .+-.|.||+
T Consensus 30 ~~~~r~~~IP~D~i~lDidy~~~--~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ 107 (332)
T cd06601 30 VEGYRDNNIPLDGLHVDVDFQDN--YRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPD 107 (332)
T ss_pred HHHHHHcCCCCceEEEcCchhcC--CCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHH
Confidence 4444444443 44455544321 11123444444445789999999999987766421 10000000 012367899
Q ss_pred hHHHHHHHHHHHHHHhCCCceEEEEccCCccccc
Q 012181 161 IVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFAN 194 (469)
Q Consensus 161 ~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~ 194 (469)
..+.|.+..+.+.+ .| -.-+|+=+|||.++..
T Consensus 108 ar~wW~~~~~~l~~-~G-v~~~W~DmnEp~~~~~ 139 (332)
T cd06601 108 VREWWGNQYKYLFD-IG-LEFVWQDMTTPAIMPS 139 (332)
T ss_pred HHHHHHHHHHHHHh-CC-CceeecCCCCcccccC
Confidence 99988776554433 23 2236899999997654
No 63
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=61.37 E-value=18 Score=37.38 Aligned_cols=94 Identities=16% Similarity=0.340 Sum_probs=57.2
Q ss_pred HHHHHHHHHcCCCEEEecc-ccc-ccccCCCCCCChhhHHHHHHHHHHHHHcCCcce-EeecCCCCchhHHhhhCCCCCh
Q 012181 83 KEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWINR 159 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~ggw~~~ 159 (469)
+|.++.|+++|++.+-+++ +-+ ++...- |... ..+-..+.++.+++.|+..+ +++ =+++|.
T Consensus 99 ~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l-~R~~--~~~~~~~ai~~l~~~g~~~v~~dl-i~GlPg------------ 162 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIGLQAWQNSLLKYL-GRIH--TFEEFLENYKLARKLGFNNINVDL-MFGLPN------------ 162 (374)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHc-CCCC--CHHHHHHHHHHHHHcCCCcEEEEe-ecCCCC------------
Confidence 6889999999999555555 222 233222 3321 25567889999999999744 444 234441
Q ss_pred hhHHHHHHHHHHHHHHhCCCceEEEEccCCccc
Q 012181 160 TIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAF 192 (469)
Q Consensus 160 ~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~ 192 (469)
++.+.|.+-.+.+.+.=-+.+..+...-+|+..
T Consensus 163 qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~ 195 (374)
T PRK05799 163 QTLEDWKETLEKVVELNPEHISCYSLIIEEGTP 195 (374)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccEecCCCH
Confidence 346666666666655433566666544477754
No 64
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=60.63 E-value=50 Score=33.16 Aligned_cols=105 Identities=16% Similarity=0.166 Sum_probs=68.3
Q ss_pred HHHHHHHHHcCC--CEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCC---CchhHHhhh----
Q 012181 83 KEDVKLMADTGL--DAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFD---LPQALEDEY---- 153 (469)
Q Consensus 83 ~eDi~l~~~lG~--~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~---~P~~l~~~~---- 153 (469)
.+-++.+++.|+ +++=+.+.|.+-.-.+.=.+|++-+--.+.+++.|+++|+++++.++-+. .|..-..+.
T Consensus 27 ~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g~~ 106 (308)
T cd06593 27 NEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKGYL 106 (308)
T ss_pred HHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCCeE
Confidence 677889999994 45667778874322111245655565678999999999999988775332 222111100
Q ss_pred -----------------CC---CCChhhHHHHHHHHHHHHHHhCCCceE-EEEccCCc
Q 012181 154 -----------------GG---WINRTIVKDFTAYADVCFRQFGDRVSY-WTTVNEPN 190 (469)
Q Consensus 154 -----------------gg---w~~~~~~~~f~~ya~~~~~~~gd~v~~-w~t~NEp~ 190 (469)
++ ++||+..+.|.+..+.+.+ .| |+. |.=+|||.
T Consensus 107 v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~~ 161 (308)
T cd06593 107 VKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGERI 161 (308)
T ss_pred EECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCCC
Confidence 11 5688899988887776554 34 565 56789973
No 65
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=60.35 E-value=51 Score=33.45 Aligned_cols=107 Identities=18% Similarity=0.198 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCCC--EEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCC-----chhHHhh---
Q 012181 83 KEDVKLMADTGLD--AYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDL-----PQALEDE--- 152 (469)
Q Consensus 83 ~eDi~l~~~lG~~--~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~-----P~~l~~~--- 152 (469)
.+-++.+++.++. ++=+.+.|.. ..+.=.+|.+-+---+++|+.|+++|++.++.++-+-. |......
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~--~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~ 104 (317)
T cd06600 27 VEVVDIMQKEGFPYDVVFLDIHYMD--SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKG 104 (317)
T ss_pred HHHHHHHHHcCCCcceEEEChhhhC--CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCC
Confidence 4445666666654 4444445543 11112355555555678999999999998877654321 2221110
Q ss_pred ---------------------hCCCCChhhHHHHHHHHHHHHHHhCCCceEEEEccCCccc
Q 012181 153 ---------------------YGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAF 192 (469)
Q Consensus 153 ---------------------~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~ 192 (469)
+-.|+||+.++.|.+..+.+....| -.-+|+=+|||..+
T Consensus 105 ~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~g-vdg~w~D~~Ep~~~ 164 (317)
T cd06600 105 KFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQG-VDGIWLDMNEPSDF 164 (317)
T ss_pred EEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCC-CceEEeeCCCCccH
Confidence 0136799999999888877765554 23357899999743
No 66
>PRK05402 glycogen branching enzyme; Provisional
Probab=60.03 E-value=52 Score=37.46 Aligned_cols=94 Identities=12% Similarity=0.134 Sum_probs=60.1
Q ss_pred hHHHH-HHHHHcCCCEEEeccc--------c-------cccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee--cCC
Q 012181 82 YKEDV-KLMADTGLDAYRFSIS--------W-------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL--HHF 143 (469)
Q Consensus 82 y~eDi-~l~~~lG~~~~R~si~--------W-------~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL--~H~ 143 (469)
..+.+ ..+|+||++++=+.=- | -.|.|.- |. .+=++++|++|+++||++|+++ .|+
T Consensus 267 i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~-Gt-----~~dfk~lV~~~H~~Gi~VilD~V~NH~ 340 (726)
T PRK05402 267 LADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRF-GT-----PDDFRYFVDACHQAGIGVILDWVPAHF 340 (726)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCccc-CC-----HHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 34453 7889999999865432 2 1233332 32 3458999999999999999995 465
Q ss_pred CCc-----------hhHHh-----hhC-------CCCChhhHHHHHHHHHHHHHHhCCCceEE
Q 012181 144 DLP-----------QALED-----EYG-------GWINRTIVKDFTAYADVCFRQFGDRVSYW 183 (469)
Q Consensus 144 ~~P-----------~~l~~-----~~g-------gw~~~~~~~~f~~ya~~~~~~~gd~v~~w 183 (469)
... .+... .+. .+.++++.+.+.+-++.-+++|+ |+-|
T Consensus 341 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~--iDG~ 401 (726)
T PRK05402 341 PKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH--IDGL 401 (726)
T ss_pred CCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC--CcEE
Confidence 221 11110 011 23477888888888888888885 5555
No 67
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=60.01 E-value=58 Score=34.08 Aligned_cols=84 Identities=18% Similarity=0.337 Sum_probs=56.5
Q ss_pred HHHHHHHHHc-CCCEEEecc--cccccccCCCCCCChhhHHHHHHHHHHHHHcCCcce-EeecCCCCchhHHhhhCCCCC
Q 012181 83 KEDVKLMADT-GLDAYRFSI--SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWIN 158 (469)
Q Consensus 83 ~eDi~l~~~l-G~~~~R~si--~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~ggw~~ 158 (469)
-+|++.++.+ ++. .++++ .| . ... .+.++.+.++++||+.. ++...|..|.+ ++|.++|
T Consensus 43 ~~d~~~v~~L~~~~-~~v~lH~~~------d-~~~------d~~~~~~~l~~~GL~v~~i~p~~f~~~~~---~~GSLt~ 105 (378)
T TIGR02635 43 IEDAALVHRLTGIC-PTVALHIPW------D-RVE------DYEELARYAEELGLKIGAINPNLFQDDDY---KFGSLTH 105 (378)
T ss_pred HHHHHHHHhhcCCC-CceeeccCC------c-ccc------CHHHHHHHHHHcCCceeeeeCCccCCccc---CCCCCCC
Confidence 6788888777 555 66665 34 1 112 37788888999999987 78777766654 3578887
Q ss_pred h--hhHHHHHHHHHHH---HHHhCCC-ceEE
Q 012181 159 R--TIVKDFTAYADVC---FRQFGDR-VSYW 183 (469)
Q Consensus 159 ~--~~~~~f~~ya~~~---~~~~gd~-v~~w 183 (469)
+ ++.+...++++.| ++.+|.. |..|
T Consensus 106 pD~~vR~~AIe~~k~~idiA~eLGa~~I~iW 136 (378)
T TIGR02635 106 PDKRIRRKAIDHLLECVDIAKKTGSKDISLW 136 (378)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 6 5566777777766 4667763 3344
No 68
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=59.77 E-value=54 Score=36.02 Aligned_cols=59 Identities=19% Similarity=0.320 Sum_probs=41.3
Q ss_pred ccChHHHHHHHHHcCCCEEEecc--------cc-------cccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee--c
Q 012181 79 YHKYKEDVKLMADTGLDAYRFSI--------SW-------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL--H 141 (469)
Q Consensus 79 y~ry~eDi~l~~~lG~~~~R~si--------~W-------~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL--~ 141 (469)
|.-..+-++.+|+||++++-+.= .| -.|.|.- |. .+=++++|++|+++||++|+++ .
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~-G~-----~~e~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAY-GG-----PDDLKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccccc-CC-----HHHHHHHHHHHHHCCCEEEEEEccC
Confidence 44456678999999999986532 12 2222322 32 4458999999999999999985 4
Q ss_pred CC
Q 012181 142 HF 143 (469)
Q Consensus 142 H~ 143 (469)
|.
T Consensus 184 H~ 185 (542)
T TIGR02402 184 HF 185 (542)
T ss_pred CC
Confidence 54
No 69
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=59.19 E-value=20 Score=34.96 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCC-------CCC--hhhHHHHHHHHHHHHHcCCcceEeec
Q 012181 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRG-------PVN--PKGLQYYNNLINELISYGIQPHVTLH 141 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g-------~~n--~~~~~~y~~~i~~l~~~gi~p~vtL~ 141 (469)
.+-++.+|+||++++-++=-+..-. ...| .+| .-..+=++++|++|+++||++|+++.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPN-GYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSS-STTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhhHHHHHcCCCceeccccccccc-ccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 5668899999999998875444110 1001 011 12356689999999999999999973
No 70
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=58.96 E-value=26 Score=33.94 Aligned_cols=80 Identities=14% Similarity=0.040 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhh
Q 012181 83 KEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTI 161 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~ 161 (469)
+++++.+++.|++.+|+++.-+.+.-... +.=.+..++...+.++.+++.|+++.+.+....-| ...
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~------------~~~ 144 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC------------KTD 144 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC------------CCC
Confidence 89999999999999999998763211110 11123357888999999999999999998554322 234
Q ss_pred HHHHHHHHHHHHH
Q 012181 162 VKDFTAYADVCFR 174 (469)
Q Consensus 162 ~~~f~~ya~~~~~ 174 (469)
.+.+.++++.+.+
T Consensus 145 ~~~l~~~~~~~~~ 157 (265)
T cd03174 145 PEYVLEVAKALEE 157 (265)
T ss_pred HHHHHHHHHHHHH
Confidence 5566666666654
No 71
>PRK12313 glycogen branching enzyme; Provisional
Probab=58.60 E-value=48 Score=37.07 Aligned_cols=97 Identities=15% Similarity=0.277 Sum_probs=61.8
Q ss_pred ccChHHH-HHHHHHcCCCEEEecc--------cc-------cccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee--
Q 012181 79 YHKYKED-VKLMADTGLDAYRFSI--------SW-------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-- 140 (469)
Q Consensus 79 y~ry~eD-i~l~~~lG~~~~R~si--------~W-------~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL-- 140 (469)
|.-..+. ++.+|+||++++=+.= +| -.|.|.- |. .+=++++|++|+++||++|+++
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~-Gt-----~~d~k~lv~~~H~~Gi~VilD~V~ 242 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY-GT-----PEDFMYLVDALHQNGIGVILDWVP 242 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC-CC-----HHHHHHHHHHHHHCCCEEEEEECC
Confidence 3444556 4999999999986432 12 2233332 32 3458999999999999999995
Q ss_pred cCCCCch----hHH--------h---h-hCCC-------CChhhHHHHHHHHHHHHHHhCCCceEE
Q 012181 141 HHFDLPQ----ALE--------D---E-YGGW-------INRTIVKDFTAYADVCFRQFGDRVSYW 183 (469)
Q Consensus 141 ~H~~~P~----~l~--------~---~-~ggw-------~~~~~~~~f~~ya~~~~~~~gd~v~~w 183 (469)
.|..... ++. + . ..+| .|+++.+.+.+-++.-+++|+ |+-|
T Consensus 243 nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~--iDG~ 306 (633)
T PRK12313 243 GHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH--LDGL 306 (633)
T ss_pred CCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC--CcEE
Confidence 4653211 110 0 0 0123 367888888888888888885 5554
No 72
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=57.74 E-value=20 Score=40.50 Aligned_cols=55 Identities=18% Similarity=0.388 Sum_probs=40.8
Q ss_pred HHHHHHcCCCEEE----ecccccccccCCC-----C-----------C--CCh---hhHHHHHHHHHHHHHcCCcceEee
Q 012181 86 VKLMADTGLDAYR----FSISWSRLIPNGR-----G-----------P--VNP---KGLQYYNNLINELISYGIQPHVTL 140 (469)
Q Consensus 86 i~l~~~lG~~~~R----~si~W~ri~P~~~-----g-----------~--~n~---~~~~~y~~~i~~l~~~gi~p~vtL 140 (469)
|+.+|+|||+++. +++.+.+..++.. | . -++ ..+.=+++||++|.++||++|+++
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 9999999999998 4555555554220 1 1 122 247779999999999999999986
No 73
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=57.60 E-value=6.4 Score=31.96 Aligned_cols=19 Identities=42% Similarity=0.767 Sum_probs=13.5
Q ss_pred HHHHhCC--CceEEEEccC-Cc
Q 012181 172 CFRQFGD--RVSYWTTVNE-PN 190 (469)
Q Consensus 172 ~~~~~gd--~v~~w~t~NE-p~ 190 (469)
++++||+ +|.+|..+|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 3567766 7999999999 66
No 74
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=57.31 E-value=27 Score=34.66 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCCEEEeccccc-ccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEe
Q 012181 83 KEDVKLMADTGLDAYRFSISWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVT 139 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~-ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt 139 (469)
+|.++.|+++|++.+-++++-+ .+.+.-.+..+ ++.+.+.++.++++||.+.+.
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s---~~~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHT---YDDRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCC---HHHHHHHHHHHHHcCCEEEEe
Confidence 8999999999999999999822 13333212223 677889999999999986544
No 75
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=56.83 E-value=28 Score=36.10 Aligned_cols=60 Identities=15% Similarity=0.112 Sum_probs=48.2
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCCcceEeec
Q 012181 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (469)
Q Consensus 82 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 141 (469)
.++|++.+.+.|++.+|+.++-|.+.-+.. +.-.++.++...+.++.+++.|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 489999999999999999887776654321 333456788899999999999999888873
No 76
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=56.42 E-value=37 Score=36.56 Aligned_cols=56 Identities=25% Similarity=0.348 Sum_probs=42.4
Q ss_pred cccChHHH-----HHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCc
Q 012181 78 GYHKYKED-----VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (469)
Q Consensus 78 ~y~ry~eD-----i~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 146 (469)
.|..|.+| ++...+.|++.+|+..+-+. ++-....++.+++.|++...++.+-.-|
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd-------------~~n~~~~i~~ak~~G~~v~~~i~~t~~p 148 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALND-------------IRNLEKSIEVAKKHGAHVQGAISYTVSP 148 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCH-------------HHHHHHHHHHHHHCCCEEEEEEEeccCC
Confidence 46778888 99999999999999886554 3346777888888898888777543334
No 77
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=56.28 E-value=38 Score=33.51 Aligned_cols=59 Identities=17% Similarity=0.258 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCCcceEeec
Q 012181 83 KEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 141 (469)
.+|++.+.+.|++.+|+.++=|...-... +.=-++.++...++++.+++.|+++.+++-
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 78999999999999999886544332211 323356789999999999999999999984
No 78
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=56.15 E-value=38 Score=33.96 Aligned_cols=85 Identities=13% Similarity=0.120 Sum_probs=61.3
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCCcceEeecC-CCCchhHHhhhCCCCCh
Q 012181 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHH-FDLPQALEDEYGGWINR 159 (469)
Q Consensus 82 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H-~~~P~~l~~~~ggw~~~ 159 (469)
-.+|++...+.|++.+++.++=|...-... +.--++.++...++|+.++++|+++..++.. |..| +.|.
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~------~~~~--- 151 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCP------YEGE--- 151 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCC------CCCC---
Confidence 489999999999999999986554432211 4445577899999999999999999877653 4444 1232
Q ss_pred hhHHHHHHHHHHHHHH
Q 012181 160 TIVKDFTAYADVCFRQ 175 (469)
Q Consensus 160 ~~~~~f~~ya~~~~~~ 175 (469)
...+.+.++++.+.+.
T Consensus 152 ~~~~~~~~~~~~~~~~ 167 (287)
T PRK05692 152 VPPEAVADVAERLFAL 167 (287)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 2367778888877654
No 79
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=55.61 E-value=26 Score=33.68 Aligned_cols=75 Identities=17% Similarity=0.377 Sum_probs=51.1
Q ss_pred ccChHHHHHHHHHcCCCEEEe----------------------cccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcc
Q 012181 79 YHKYKEDVKLMADTGLDAYRF----------------------SISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQP 136 (469)
Q Consensus 79 y~ry~eDi~l~~~lG~~~~R~----------------------si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p 136 (469)
--.-+.=++++++||.++..| ++ | +||.| .+| ++.+..+++.+++.|++-
T Consensus 134 iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPTG--GId---l~Nf~~I~~i~ldaGv~k 205 (236)
T TIGR03581 134 IVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPTG--GID---LDNFEEIVQIALDAGVEK 205 (236)
T ss_pred eeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCCC--Ccc---HHhHHHHHHHHHHcCCCe
Confidence 344577799999999999885 33 3 68875 488 788999999999999987
Q ss_pred eEeecCCCCchhHHhhhCCCCChhhHHHH
Q 012181 137 HVTLHHFDLPQALEDEYGGWINRTIVKDF 165 (469)
Q Consensus 137 ~vtL~H~~~P~~l~~~~ggw~~~~~~~~f 165 (469)
++ .|.- .-..++-.|-++++-+...
T Consensus 206 vi--PHIY--ssiIDk~tG~TrpedV~~l 230 (236)
T TIGR03581 206 VI--PHVY--SSIIDKETGNTRVEDVKQL 230 (236)
T ss_pred ec--cccc--eeccccccCCCCHHHHHHH
Confidence 64 3320 0112334566666555443
No 80
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=55.18 E-value=62 Score=33.08 Aligned_cols=105 Identities=15% Similarity=0.149 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCCC--EEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCC-----CCchhHHhh---
Q 012181 83 KEDVKLMADTGLD--AYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHF-----DLPQALEDE--- 152 (469)
Q Consensus 83 ~eDi~l~~~lG~~--~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~-----~~P~~l~~~--- 152 (469)
.+-++.+++.|+. ++=+.+.|..-. +.=.+|++-+---++|++.|+++|++.++..+-+ +.|..-..+
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~~~--~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g 104 (339)
T cd06604 27 REIADEFRERDIPCDAIYLDIDYMDGY--RVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLEND 104 (339)
T ss_pred HHHHHHHHHhCCCcceEEECchhhCCC--CceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCC
Confidence 4556666666654 344444454321 1112344333335789999999999988765432 122222111
Q ss_pred ---------------------hCCCCChhhHHHHHHHHHHHHHHhCCCceE-EEEccCCccc
Q 012181 153 ---------------------YGGWINRTIVKDFTAYADVCFRQFGDRVSY-WTTVNEPNAF 192 (469)
Q Consensus 153 ---------------------~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~-w~t~NEp~~~ 192 (469)
.-.|+||+.++.|.+.-+.+. ...|+. |+=+|||..+
T Consensus 105 ~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~---~~Gvdg~w~D~~Ep~~~ 163 (339)
T cd06604 105 YFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV---DLGVDGIWNDMNEPAVF 163 (339)
T ss_pred eEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh---hCCCceEeecCCCcccc
Confidence 013678999998877666654 234555 6899999865
No 81
>PRK03705 glycogen debranching enzyme; Provisional
Probab=55.14 E-value=24 Score=39.64 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=37.5
Q ss_pred HHHHHHcCCCEEEecc------------------------cccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee
Q 012181 86 VKLMADTGLDAYRFSI------------------------SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (469)
Q Consensus 86 i~l~~~lG~~~~R~si------------------------~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 140 (469)
++.+|+||++++=+.= .+-.+.|.- |.-....++-+++||++|.++||++|+.+
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y-gt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY-ASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc-CCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 8999999999886421 112333332 22111245679999999999999999996
No 82
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=54.26 E-value=41 Score=37.40 Aligned_cols=98 Identities=15% Similarity=0.179 Sum_probs=56.5
Q ss_pred cccChHHH-----HHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCc----hh
Q 012181 78 GYHKYKED-----VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP----QA 148 (469)
Q Consensus 78 ~y~ry~eD-----i~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P----~~ 148 (469)
-|.+|.+| ++..++.|++.+|+....+.+ +.....|+.+++.|.....++..=+-| ..
T Consensus 90 g~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~-------------~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~ 156 (593)
T PRK14040 90 GYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP-------------RNLETALKAVRKVGAHAQGTLSYTTSPVHTLQT 156 (593)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH-------------HHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHH
Confidence 36676666 999999999999999654433 345666677777777655444332233 22
Q ss_pred HHhh----------------hCCCCChhhHHHHHHHHHHHHHHhCCCceEEEEccCCccc
Q 012181 149 LEDE----------------YGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAF 192 (469)
Q Consensus 149 l~~~----------------~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~ 192 (469)
+.+. --|-..| ....+.++.+-++++ ..-...+-|-..+.
T Consensus 157 ~~~~a~~l~~~Gad~i~i~Dt~G~l~P---~~~~~lv~~lk~~~~-~pi~~H~Hnt~GlA 212 (593)
T PRK14040 157 WVDLAKQLEDMGVDSLCIKDMAGLLKP---YAAYELVSRIKKRVD-VPLHLHCHATTGLS 212 (593)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcCH---HHHHHHHHHHHHhcC-CeEEEEECCCCchH
Confidence 2110 0233343 444555555556663 23335688877653
No 83
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=53.68 E-value=55 Score=28.88 Aligned_cols=54 Identities=7% Similarity=0.151 Sum_probs=38.8
Q ss_pred HHHHHHHHcCCCEEEeccc------c--cccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeec
Q 012181 84 EDVKLMADTGLDAYRFSIS------W--SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (469)
Q Consensus 84 eDi~l~~~lG~~~~R~si~------W--~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 141 (469)
+=++.||++|+|+.-+... | +++.+.- -... -+.+.++|+.++++||++++=+-
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~h-p~L~---~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRH-PGLK---RDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCC-CCCC---cCHHHHHHHHHHHCCCEEEEEEe
Confidence 4478899999999998332 2 3444432 1222 47899999999999999987653
No 84
>PRK09936 hypothetical protein; Provisional
Probab=53.53 E-value=1.4e+02 Score=30.08 Aligned_cols=61 Identities=16% Similarity=0.231 Sum_probs=44.2
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHh
Q 012181 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALED 151 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~ 151 (469)
++=++.++.+|+++. =+-|++.--+..|.-+ .+..+.++.+.+.||+.+|.|+ +| |.|.+.
T Consensus 41 q~~~~~~~~~G~~tL--ivQWt~yG~~~fg~~~----g~La~~l~~A~~~Gl~v~vGL~-~D-p~y~q~ 101 (296)
T PRK09936 41 QGLWSQLRLQGFDTL--VVQWTRYGDADFGGQR----GWLAKRLAAAQQAGLKLVVGLY-AD-PEFFMH 101 (296)
T ss_pred HHHHHHHHHcCCcEE--EEEeeeccCCCcccch----HHHHHHHHHHHHcCCEEEEccc-CC-hHHHHH
Confidence 666789999999985 4589888222113222 3589999999999999999995 33 555543
No 85
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=52.62 E-value=26 Score=38.45 Aligned_cols=56 Identities=14% Similarity=0.223 Sum_probs=40.3
Q ss_pred ccChHHHHHHHHHcCCCEEEecccc--------------cccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee
Q 012181 79 YHKYKEDVKLMADTGLDAYRFSISW--------------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (469)
Q Consensus 79 y~ry~eDi~l~~~lG~~~~R~si~W--------------~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 140 (469)
+.-..+-++.+++||++++=++=.. .+|.|.- | ..+-++.+|++++++||++|+++
T Consensus 26 ~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~-G-----t~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 26 LRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLF-G-----TMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCccc-C-----CHHHHHHHHHHHHHCCCEEEEEE
Confidence 4444677899999999998654322 2233332 2 24568999999999999999996
No 86
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=52.45 E-value=48 Score=34.27 Aligned_cols=84 Identities=11% Similarity=0.009 Sum_probs=60.8
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCCcceEeecC-CCCchhHHhhhCCCCCh
Q 012181 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHH-FDLPQALEDEYGGWINR 159 (469)
Q Consensus 82 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H-~~~P~~l~~~~ggw~~~ 159 (469)
-.+|++...+.|+..+.+.++=|...-... +.--++.++.+.++|+.++++|+++.+++.. |..|. .+ +
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~------~~---r 193 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI------EG---P 193 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc------cC---C
Confidence 489999999999999999986665544432 4446788999999999999999999877643 43331 12 2
Q ss_pred hhHHHHHHHHHHHHH
Q 012181 160 TIVKDFTAYADVCFR 174 (469)
Q Consensus 160 ~~~~~f~~ya~~~~~ 174 (469)
..++.+.++++.+.+
T Consensus 194 ~~~~~l~~~~~~~~~ 208 (347)
T PLN02746 194 VPPSKVAYVAKELYD 208 (347)
T ss_pred CCHHHHHHHHHHHHH
Confidence 236666677776654
No 87
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=51.90 E-value=97 Score=34.55 Aligned_cols=94 Identities=10% Similarity=0.078 Sum_probs=60.5
Q ss_pred hHHHH-HHHHHcCCCEEEe-ccccc--------------ccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeec--CC
Q 012181 82 YKEDV-KLMADTGLDAYRF-SISWS--------------RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH--HF 143 (469)
Q Consensus 82 y~eDi-~l~~~lG~~~~R~-si~W~--------------ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~--H~ 143 (469)
..+.+ +.+|+||++++=+ .|... .+.|.- |. .+=++++|++|+++||.+|+.+. |.
T Consensus 158 i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~-Gt-----~~dlk~lV~~~H~~Gi~VilD~V~NH~ 231 (613)
T TIGR01515 158 LADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRF-GT-----PDDFMYFVDACHQAGIGVILDWVPGHF 231 (613)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCccccccc-CC-----HHHHHHHHHHHHHCCCEEEEEecccCc
Confidence 34564 8999999999987 44322 122221 21 33589999999999999999963 54
Q ss_pred CC-----------chhHHhh-----hCC-------CCChhhHHHHHHHHHHHHHHhCCCceEE
Q 012181 144 DL-----------PQALEDE-----YGG-------WINRTIVKDFTAYADVCFRQFGDRVSYW 183 (469)
Q Consensus 144 ~~-----------P~~l~~~-----~gg-------w~~~~~~~~f~~ya~~~~~~~gd~v~~w 183 (469)
.. |.+.... ... +.++++.+.+.+-++.-+++|+ |+-|
T Consensus 232 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~--iDG~ 292 (613)
T TIGR01515 232 PKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH--IDGL 292 (613)
T ss_pred CCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC--CcEE
Confidence 21 1121100 011 2367888899999999999985 4444
No 88
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=51.38 E-value=59 Score=33.53 Aligned_cols=52 Identities=15% Similarity=0.283 Sum_probs=44.1
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee
Q 012181 86 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (469)
Q Consensus 86 i~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 140 (469)
++.++++|.+++-+-+-|. |+....+|..-++...++.++|+++||..++-+
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDEDDAINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcchHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 5779999999999999988 553234577889999999999999999998865
No 89
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=51.10 E-value=60 Score=34.07 Aligned_cols=86 Identities=13% Similarity=0.351 Sum_probs=56.7
Q ss_pred cChHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCCh
Q 012181 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINR 159 (469)
Q Consensus 80 ~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~ 159 (469)
..|++||++++++||+.|=+.|- .. ..+. .+....+++.+.+.|.+.++.+ |+.. .+-|..
T Consensus 17 ~dw~~di~~A~~~GIDgFaLNig------~~-d~~~---~~~l~~a~~AA~~~gFKlf~Sf---D~~~-----~~~~~~- 77 (386)
T PF03659_consen 17 EDWEADIRLAQAAGIDGFALNIG------SS-DSWQ---PDQLADAYQAAEAVGFKLFFSF---DMNS-----LGPWSQ- 77 (386)
T ss_pred HHHHHHHHHHHHcCCCEEEEecc------cC-Cccc---HHHHHHHHHHHHhcCCEEEEEe---cccC-----CCCCCH-
Confidence 34699999999999999999886 11 2344 4667889999999998888775 5521 122332
Q ss_pred hhHHHHHHHHHHHHHHhCCCceEEEEccCCcc
Q 012181 160 TIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (469)
Q Consensus 160 ~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 191 (469)
+-...+++.|+.+..++..=+=|-+
T Consensus 78 -------~~~~~~i~~y~~~pa~~~~~Gkp~V 102 (386)
T PF03659_consen 78 -------DELIALIKKYAGHPAYFRYDGKPVV 102 (386)
T ss_pred -------HHHHHHHHHHcCChhHEeECCeEEE
Confidence 2234445666666666664444433
No 90
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=51.09 E-value=55 Score=32.34 Aligned_cols=65 Identities=11% Similarity=0.104 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhhH
Q 012181 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIV 162 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~ 162 (469)
.+|++...+.|++.+|+++..+ .++...++++.++++|+++.+.+.+-. + ...
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~-------------~~~~~~~~i~~ak~~G~~v~~~~~~a~----------~----~~~ 137 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH-------------EFDEALPLIKAIKEKGYEVFFNLMAIS----------G----YSD 137 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc-------------cHHHHHHHHHHHHHCCCeEEEEEEeec----------C----CCH
Confidence 5899999999999999987332 377889999999999999999986521 1 235
Q ss_pred HHHHHHHHHHHH
Q 012181 163 KDFTAYADVCFR 174 (469)
Q Consensus 163 ~~f~~ya~~~~~ 174 (469)
+.+.++++.+.+
T Consensus 138 ~~~~~~~~~~~~ 149 (266)
T cd07944 138 EELLELLELVNE 149 (266)
T ss_pred HHHHHHHHHHHh
Confidence 666777776654
No 91
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=50.98 E-value=31 Score=37.89 Aligned_cols=56 Identities=18% Similarity=0.324 Sum_probs=40.7
Q ss_pred ccChHHHHHHHHHcCCCEEEeccccc--------------ccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee
Q 012181 79 YHKYKEDVKLMADTGLDAYRFSISWS--------------RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (469)
Q Consensus 79 y~ry~eDi~l~~~lG~~~~R~si~W~--------------ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 140 (469)
+.-..+.++.+++||++++=++=-+. .|.|.- | ..+-++++|++++++||++|+++
T Consensus 32 l~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~-G-----t~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 32 LRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTY-G-----TLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCccc-C-----CHHHHHHHHHHHHHCCCEEEEEE
Confidence 44456889999999999987654331 222221 2 24568999999999999999986
No 92
>PLN02923 xylose isomerase
Probab=50.92 E-value=1.5e+02 Score=31.63 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHcCCcceEeecCCCC
Q 012181 118 GLQYYNNLINELISYGIQPHVTLHHFDL 145 (469)
Q Consensus 118 ~~~~y~~~i~~l~~~gi~p~vtL~H~~~ 145 (469)
+.+..+..++.+.+-|+ |.+|+|.-|+
T Consensus 121 A~~k~daaFEf~~kLG~-~y~cFHD~Dl 147 (478)
T PLN02923 121 AKRRMRANFEFLKKLGV-DRWCFHDRDI 147 (478)
T ss_pred HHHHHHHHHHHHHHhCC-CeEccCcccc
Confidence 56677888889999998 6779888775
No 93
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=50.87 E-value=31 Score=37.15 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=42.7
Q ss_pred ccChHHHHHHHHHcCCCEEEeccccccc--------ccCCC---------CCCChh--hHHHHHHHHHHHHHcCCcceEe
Q 012181 79 YHKYKEDVKLMADTGLDAYRFSISWSRL--------IPNGR---------GPVNPK--GLQYYNNLINELISYGIQPHVT 139 (469)
Q Consensus 79 y~ry~eDi~l~~~lG~~~~R~si~W~ri--------~P~~~---------g~~n~~--~~~~y~~~i~~l~~~gi~p~vt 139 (469)
|.-..+-++.+++||++++=++=...-. .|.-- |.+|+. ..+=++++|++|+++||++|+.
T Consensus 21 ~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D 100 (479)
T PRK09441 21 WNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYAD 100 (479)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4445777899999999998766533321 11100 011111 2445899999999999999999
Q ss_pred e--cCC
Q 012181 140 L--HHF 143 (469)
Q Consensus 140 L--~H~ 143 (469)
+ .|-
T Consensus 101 ~V~NH~ 106 (479)
T PRK09441 101 VVLNHK 106 (479)
T ss_pred ECcccc
Confidence 6 464
No 94
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=50.18 E-value=40 Score=33.68 Aligned_cols=87 Identities=13% Similarity=0.152 Sum_probs=53.0
Q ss_pred CcccceecccCcccCCCcccCccccChHHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCC
Q 012181 56 PSIWDTFAHAGNVHGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGI 134 (469)
Q Consensus 56 ~s~wd~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi 134 (469)
.+.|+-|..... ...+..+.-.+.++++=|+..+++|+..+=+.--|+.-.+... .......-....++++-.++.|+
T Consensus 9 k~~W~Ww~~~~~-~~~~~~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgV 87 (273)
T PF10566_consen 9 KAAWSWWSMHNG-KGVGFKHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGV 87 (273)
T ss_dssp EEEECTCCCCTT-SSBSS-BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-
T ss_pred eEEEeecccCCC-CCCCCcCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCC
Confidence 355665544311 0112223446788899999999999999999999997332211 00011111337899999999999
Q ss_pred cceEeecCC
Q 012181 135 QPHVTLHHF 143 (469)
Q Consensus 135 ~p~vtL~H~ 143 (469)
.++|-.+|-
T Consensus 88 gi~lw~~~~ 96 (273)
T PF10566_consen 88 GIWLWYHSE 96 (273)
T ss_dssp EEEEEEECC
T ss_pred CEEEEEeCC
Confidence 999998774
No 95
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=49.15 E-value=94 Score=31.29 Aligned_cols=78 Identities=19% Similarity=0.196 Sum_probs=51.2
Q ss_pred HHHHHcCCCEEEeccc--ccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCC------
Q 012181 87 KLMADTGLDAYRFSIS--WSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWIN------ 158 (469)
Q Consensus 87 ~l~~~lG~~~~R~si~--W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~------ 158 (469)
+.+++.|++.+-+++. -..-.|.-.|............-|..|++.|.+++|.+ |||.+
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g~~~~~~~~~~~~~i~~lk~~G~kViiS~-------------GG~~g~~~~~~ 85 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGGSYPLDQGGWIKSDIAALRAAGGDVIVSF-------------GGASGTPLATS 85 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCCCCCcccchhHHHHHHHHHHcCCeEEEEe-------------cCCCCCccccC
Confidence 5678899998887753 22223321121110112345778999999999999997 55553
Q ss_pred hhhHHHHHHHHHHHHHHhC
Q 012181 159 RTIVKDFTAYADVCFRQFG 177 (469)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~g 177 (469)
...++.|++....+.+.|+
T Consensus 86 ~~~~~~~~~a~~~~i~~y~ 104 (294)
T cd06543 86 CTSADQLAAAYQKVIDAYG 104 (294)
T ss_pred cccHHHHHHHHHHHHHHhC
Confidence 3567888888888888886
No 96
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=49.04 E-value=14 Score=28.22 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=32.6
Q ss_pred cccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCC
Q 012181 104 SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFD 144 (469)
Q Consensus 104 ~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~ 144 (469)
+++.|+. +.=-.++++..-+++..|.++|| +++.|++-+
T Consensus 19 s~l~p~~-~~d~~kaldiCaeIL~cLE~R~i-sWl~LFqlt 57 (64)
T PF03511_consen 19 SYLAPKE-GADSLKALDICAEILGCLEKRKI-SWLVLFQLT 57 (64)
T ss_pred HhcCccc-ccccHHHHHHHHHHHHHHHhCCC-cHHHhhhcc
Confidence 6788886 66667899999999999999999 888886643
No 97
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=48.61 E-value=91 Score=30.94 Aligned_cols=69 Identities=12% Similarity=0.045 Sum_probs=50.0
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhh
Q 012181 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTI 161 (469)
Q Consensus 82 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~ 161 (469)
-++|++...+.|++.+|+++.-+. ++...+.++.+++.|+++.+++.-- .+ .+..
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~-------------~~~~~~~i~~ak~~G~~v~~~i~~~---------~~---~~~~ 147 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND-------------VRNLEVAIKAVKKAGKHVEGAICYT---------GS---PVHT 147 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh-------------HHHHHHHHHHHHHCCCeEEEEEEec---------CC---CCCC
Confidence 388999999999999999875443 5678899999999999988765210 01 2334
Q ss_pred HHHHHHHHHHHHHH
Q 012181 162 VKDFTAYADVCFRQ 175 (469)
Q Consensus 162 ~~~f~~ya~~~~~~ 175 (469)
.+.+.++++.+.+.
T Consensus 148 ~~~~~~~~~~~~~~ 161 (275)
T cd07937 148 LEYYVKLAKELEDM 161 (275)
T ss_pred HHHHHHHHHHHHHc
Confidence 66677777776553
No 98
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=47.50 E-value=61 Score=34.90 Aligned_cols=97 Identities=16% Similarity=0.309 Sum_probs=61.9
Q ss_pred CCCCCeeeeecccccccCccCCCCCCCcccceeccc-CcccC-------CCcccCccccChHHH-----HHHHHHcCCCE
Q 012181 30 FPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA-GNVHG-------TGDIACDGYHKYKED-----VKLMADTGLDA 96 (469)
Q Consensus 30 fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~-~~~~~-------~~~~a~d~y~ry~eD-----i~l~~~lG~~~ 96 (469)
|+.-=.||.|| |++--.. -..+-|+..... ..+++ .| .-.=-|..|.+| +++.++.|++.
T Consensus 49 ~~siE~wGGAt--fd~~~rf----l~edpwerlr~~r~~~~nt~lqmLlRG-~n~vgy~~ypddvv~~fv~~a~~~Gidi 121 (468)
T PRK12581 49 YYSLECWGGAT--FDACIRF----LNEDPWERLRTLKKGLPNTRLQMLLRG-QNLLGYRHYADDIVDKFISLSAQNGIDV 121 (468)
T ss_pred CCEEEecCCcc--hhhhhcc----cCCCHHHHHHHHHHhCCCCceeeeecc-ccccCccCCcchHHHHHHHHHHHCCCCE
Confidence 33333676665 5653332 245678776553 22222 11 111247888889 99999999999
Q ss_pred EEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCc
Q 012181 97 YRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (469)
Q Consensus 97 ~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 146 (469)
+|..-. .| -++-....|+.+++.|.+..+++.+=+-|
T Consensus 122 ~Rifd~-----------ln--d~~n~~~ai~~ak~~G~~~~~~i~yt~sp 158 (468)
T PRK12581 122 FRIFDA-----------LN--DPRNIQQALRAVKKTGKEAQLCIAYTTSP 158 (468)
T ss_pred EEEccc-----------CC--CHHHHHHHHHHHHHcCCEEEEEEEEEeCC
Confidence 998642 22 25567888899999999988888775555
No 99
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=47.43 E-value=27 Score=42.14 Aligned_cols=53 Identities=19% Similarity=0.264 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCCEEEecccc------------------------cccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEe
Q 012181 84 EDVKLMADTGLDAYRFSISW------------------------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVT 139 (469)
Q Consensus 84 eDi~l~~~lG~~~~R~si~W------------------------~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt 139 (469)
+.|+.+|+||++++=+.=-. -.+.|.- |. ...+=+++||++|+++||++|++
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~y-g~---~~~~efk~lV~~~H~~GI~VILD 266 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRL-AP---GGEEEFAQAIKEAQSAGIAVILD 266 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhh-cc---CcHHHHHHHHHHHHHCCCEEEEE
Confidence 66889999999998653221 1122221 11 14566899999999999999998
Q ss_pred e
Q 012181 140 L 140 (469)
Q Consensus 140 L 140 (469)
+
T Consensus 267 v 267 (1221)
T PRK14510 267 V 267 (1221)
T ss_pred E
Confidence 5
No 100
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=47.21 E-value=93 Score=31.79 Aligned_cols=90 Identities=17% Similarity=0.224 Sum_probs=64.3
Q ss_pred HHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhhHHH
Q 012181 85 DVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKD 164 (469)
Q Consensus 85 Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~ 164 (469)
..+.+|++|.++..|=+-|. |+.+..+|..-.++.+++.++|++++|--++-+.-+|.+.- +. .+.+....
T Consensus 110 S~~rike~GadavK~Llyy~---pD~~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~~~--d~----~~~~yak~ 180 (324)
T PRK12399 110 SAKRIKEEGADAVKFLLYYD---VDEPDEINEQKKAYIERIGSECVAEDIPFFLEILTYDEKIA--DN----GSVEYAKV 180 (324)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCccc--cc----ccHHHHhh
Confidence 37889999999999999887 66545588888999999999999999999998876654421 11 12222222
Q ss_pred HHHHHHHHHHHhCC---CceEE
Q 012181 165 FTAYADVCFRQFGD---RVSYW 183 (469)
Q Consensus 165 f~~ya~~~~~~~gd---~v~~w 183 (469)
--+.+-..++.|++ .|+.|
T Consensus 181 kP~~V~~a~kefs~~~~gvDVl 202 (324)
T PRK12399 181 KPHKVNEAMKVFSKPRFGVDVL 202 (324)
T ss_pred ChHHHHHHHHHhccCCCCCcEE
Confidence 23334446777765 57776
No 101
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=47.12 E-value=1.3e+02 Score=30.90 Aligned_cols=85 Identities=20% Similarity=0.310 Sum_probs=60.6
Q ss_pred ccCccccChHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhh
Q 012181 74 IACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEY 153 (469)
Q Consensus 74 ~a~d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ 153 (469)
+|-=||+ |+-=+ ...+.|+..+|.. + |.+-.+ +....+++.++++||-.=+..+|-.+.+-+.++|
T Consensus 78 VaDiHf~-~rla~-~~~~~g~~k~RIN---------P-GNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky 143 (361)
T COG0821 78 VADIHFD-YRLAL-EAAECGVDKVRIN---------P-GNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKY 143 (361)
T ss_pred EEEeecc-HHHHH-HhhhcCcceEEEC---------C-cccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHHHHh
Confidence 3444666 44333 3446778888863 3 444322 2789999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHH
Q 012181 154 GGWINRTIVKDFTAYADVC 172 (469)
Q Consensus 154 ggw~~~~~~~~f~~ya~~~ 172 (469)
|+-+.+..++--.++++.+
T Consensus 144 ~~pt~ealveSAl~~a~~~ 162 (361)
T COG0821 144 GGPTPEALVESALEHAELL 162 (361)
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 8766555566555555554
No 102
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=46.95 E-value=95 Score=31.78 Aligned_cols=91 Identities=20% Similarity=0.238 Sum_probs=65.5
Q ss_pred HHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhhHH
Q 012181 84 EDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVK 163 (469)
Q Consensus 84 eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~ 163 (469)
-+.+.+|++|.++..|=+-|. |+++-.+|..-.++.+++.++|++++|--++-+.-+|.+.- + =.+++...
T Consensus 111 ws~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~~~--d----~~~~eyak 181 (329)
T PRK04161 111 WSVKRLKEAGADAVKFLLYYD---VDGDEEINDQKQAYIERIGSECTAEDIPFFLELLTYDERIS--D----NNSAAYAK 181 (329)
T ss_pred hhHHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCccc--c----cccHHHHh
Confidence 457899999999999999887 66445688888999999999999999999999877754321 1 12233332
Q ss_pred HHHHHHHHHHHHhCC---CceEE
Q 012181 164 DFTAYADVCFRQFGD---RVSYW 183 (469)
Q Consensus 164 ~f~~ya~~~~~~~gd---~v~~w 183 (469)
.--+.+-..++.|++ .|+.|
T Consensus 182 ~kP~~V~~amkefs~~~~gvDVl 204 (329)
T PRK04161 182 LKPHKVNGAMKVFSDKRFGVDVL 204 (329)
T ss_pred hChHHHHHHHHHhccCCCCCcEE
Confidence 323345556677775 57776
No 103
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=46.84 E-value=51 Score=34.36 Aligned_cols=58 Identities=17% Similarity=0.168 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCCcceEee
Q 012181 83 KEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTL 140 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 140 (469)
++|++.+.+.|++.++++++-|.+.-... +.--++.++...+.++.+++.|+++.++.
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 88999999999999999997776543321 44456778999999999999999988874
No 104
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=46.08 E-value=47 Score=34.41 Aligned_cols=80 Identities=20% Similarity=0.139 Sum_probs=57.3
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhh
Q 012181 83 KEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTI 161 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~ 161 (469)
++|++.+.+.|++.+|+.++-|.+.-... +.-..+.++...+.++.++++|+++.+++-. .+.. .
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed-----------~~r~---~ 140 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGED-----------ASRA---D 140 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecC-----------CCCC---C
Confidence 89999999999999999998775443321 3334567889999999999999998766421 2222 3
Q ss_pred HHHHHHHHHHHHHHhC
Q 012181 162 VKDFTAYADVCFRQFG 177 (469)
Q Consensus 162 ~~~f~~ya~~~~~~~g 177 (469)
.+.+.++++.+.+ .|
T Consensus 141 ~~~l~~~~~~~~~-~G 155 (365)
T TIGR02660 141 PDFLVELAEVAAE-AG 155 (365)
T ss_pred HHHHHHHHHHHHH-cC
Confidence 5666677776554 44
No 105
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=45.75 E-value=93 Score=32.20 Aligned_cols=94 Identities=17% Similarity=0.254 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCCCEEEeccc--ccccccCCCCCCChhhHHHHHHHHHHHHHcCCcce-EeecCCCCchhHHhhhCCCCCh
Q 012181 83 KEDVKLMADTGLDAYRFSIS--WSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWINR 159 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~--W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~ggw~~~ 159 (469)
+|.+++|+++|++.+-+++. -.++...-....+ .+...+.++.+++.|+..+ +.+ =+++|.
T Consensus 100 ~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~---~~~~~~~i~~l~~~g~~~v~~dl-i~GlPg------------ 163 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHN---EEDVYEAIANAKKAGFDNISIDL-IYALPG------------ 163 (377)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCcEEEee-ecCCCC------------
Confidence 78999999999998877772 3345544312234 5567899999999999744 333 244442
Q ss_pred hhHHHHHHHHHHHHHHhCCCceEEEEccCCccc
Q 012181 160 TIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAF 192 (469)
Q Consensus 160 ~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~ 192 (469)
++.+.|.+=.+.+.+.=-+.+..+...-+|...
T Consensus 164 qt~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~ 196 (377)
T PRK08599 164 QTIEDFKESLAKALALDIPHYSAYSLILEPKTV 196 (377)
T ss_pred CCHHHHHHHHHHHHccCCCEEeeeceeecCCCh
Confidence 234555555555544323344444444566643
No 106
>PLN02784 alpha-amylase
Probab=43.84 E-value=49 Score=38.22 Aligned_cols=66 Identities=15% Similarity=0.243 Sum_probs=46.9
Q ss_pred ccccChHHHHHHHHHcCCCEEEecccccccccCCCC-----CCChh--hHHHHHHHHHHHHHcCCcceEee--cC
Q 012181 77 DGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRG-----PVNPK--GLQYYNNLINELISYGIQPHVTL--HH 142 (469)
Q Consensus 77 d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g-----~~n~~--~~~~y~~~i~~l~~~gi~p~vtL--~H 142 (469)
.+|....+.++.+++||++++=++=...-..+.|=. .+|.. ..+-++.+|+.|+++||.+|+++ +|
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH 592 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNH 592 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECccc
Confidence 478888999999999999999776543333222200 11211 23568999999999999999985 45
No 107
>PRK09505 malS alpha-amylase; Reviewed
Probab=43.45 E-value=59 Score=36.81 Aligned_cols=63 Identities=17% Similarity=0.282 Sum_probs=42.3
Q ss_pred hHHHHHHHHHcCCCEEEecccccccc-----------c--CCCC-------CCCh--hhHHHHHHHHHHHHHcCCcceEe
Q 012181 82 YKEDVKLMADTGLDAYRFSISWSRLI-----------P--NGRG-------PVNP--KGLQYYNNLINELISYGIQPHVT 139 (469)
Q Consensus 82 y~eDi~l~~~lG~~~~R~si~W~ri~-----------P--~~~g-------~~n~--~~~~~y~~~i~~l~~~gi~p~vt 139 (469)
..+-++.+++||++++=++=-...+. | ...| .+|+ -..+-++++|++++++||++|++
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45668899999999998774443321 1 0001 1222 13556999999999999999998
Q ss_pred e--cCCC
Q 012181 140 L--HHFD 144 (469)
Q Consensus 140 L--~H~~ 144 (469)
+ .|-.
T Consensus 312 ~V~NH~~ 318 (683)
T PRK09505 312 VVMNHTG 318 (683)
T ss_pred ECcCCCc
Confidence 5 4543
No 108
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=43.24 E-value=41 Score=36.77 Aligned_cols=53 Identities=15% Similarity=0.345 Sum_probs=38.4
Q ss_pred hHHHHHHHHHcCCCEEEeccc--------------ccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee
Q 012181 82 YKEDVKLMADTGLDAYRFSIS--------------WSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (469)
Q Consensus 82 y~eDi~l~~~lG~~~~R~si~--------------W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 140 (469)
..+-++.+++||++++=++=- .-+|.|.- | ..+-++++|++++++||++|+++
T Consensus 30 i~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~-G-----t~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 30 LTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEF-G-----TIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhh-C-----CHHHHHHHHHHHHHCCCEEEEEe
Confidence 366689999999998865422 12333332 2 24568999999999999999986
No 109
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=42.52 E-value=93 Score=33.36 Aligned_cols=51 Identities=14% Similarity=0.155 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCc
Q 012181 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 146 (469)
++|++.+.+.|++.+|+.++-+.+. .....|+.+++.|+++.+++..-+-|
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~-------------n~~~~v~~ak~~G~~v~~~i~~t~~p 149 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDVR-------------NLETAVKATKKAGGHAQVAISYTTSP 149 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHH-------------HHHHHHHHHHHcCCeEEEEEEeecCC
Confidence 5667999999999999998655441 25668999999999988777554434
No 110
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=42.07 E-value=74 Score=32.24 Aligned_cols=108 Identities=15% Similarity=0.090 Sum_probs=61.1
Q ss_pred HHHHHHHHHcCCCEEEe--cccccccccC--CCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCC---chhHHhhh--
Q 012181 83 KEDVKLMADTGLDAYRF--SISWSRLIPN--GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDL---PQALEDEY-- 153 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~--si~W~ri~P~--~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~---P~~l~~~~-- 153 (469)
.+-++.+++.|+..==+ .+.|....-. ..-.+|.+.+---++||+.|+++|++.++.++-+-. |..-..+.
T Consensus 32 ~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g 111 (317)
T cd06599 32 LEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAG 111 (317)
T ss_pred HHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCC
Confidence 45556666777653333 3344432110 001244444444678999999999998887764432 22111100
Q ss_pred -------C----------------CCCChhhHHHHHHHHHHHHHHhCCCceEEEEccCCcc
Q 012181 154 -------G----------------GWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (469)
Q Consensus 154 -------g----------------gw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 191 (469)
| .++||+..+.|.+..+..+...| ---+|+=+|||.+
T Consensus 112 ~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G-vdg~w~D~~E~~~ 171 (317)
T cd06599 112 AFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLG-IDSTWNDNNEYEI 171 (317)
T ss_pred cEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCC-CcEEEecCCCCcc
Confidence 0 14688888888887765555544 2345789999974
No 111
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=41.97 E-value=68 Score=34.25 Aligned_cols=87 Identities=20% Similarity=0.402 Sum_probs=57.5
Q ss_pred HHH-HHHHHHcCCCEEEe-------------------------cccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcc
Q 012181 83 KED-VKLMADTGLDAYRF-------------------------SISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQP 136 (469)
Q Consensus 83 ~eD-i~l~~~lG~~~~R~-------------------------si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p 136 (469)
+.| ++++|+|.+...|+ .+.|.-.|+.+.| .+++++.|+..|.||
T Consensus 51 RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~G---------t~EF~~~~e~iGaep 121 (501)
T COG3534 51 RKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFG---------THEFMDWCELIGAEP 121 (501)
T ss_pred HHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhccccccccccccc---------HHHHHHHHHHhCCce
Confidence 555 78999999999984 3344433333322 578999999999999
Q ss_pred eEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHH--------HHHhCC----CceEEEEccCCc
Q 012181 137 HVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVC--------FRQFGD----RVSYWTTVNEPN 190 (469)
Q Consensus 137 ~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~--------~~~~gd----~v~~w~t~NEp~ 190 (469)
++.+.= | =...+....|.+||..= =...|- .||+|.+=||-.
T Consensus 122 ~~avN~-----------G-srgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~ 175 (501)
T COG3534 122 YIAVNL-----------G-SRGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMD 175 (501)
T ss_pred EEEEec-----------C-CccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEeccccC
Confidence 999842 1 12334556677766432 222232 499999999953
No 112
>PRK10785 maltodextrin glucosidase; Provisional
Probab=41.94 E-value=52 Score=36.54 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCCEEEecc-------------cccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee
Q 012181 83 KEDVKLMADTGLDAYRFSI-------------SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si-------------~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 140 (469)
.+-++.+++|||+++=++= .+.+|.|.- | ..+-++++|++++++||++|+++
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~-G-----t~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQL-G-----GDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCccc-C-----CHHHHHHHHHHHHHCCCEEEEEE
Confidence 5668999999999887653 223344432 2 23458999999999999999986
No 113
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=41.27 E-value=86 Score=33.49 Aligned_cols=104 Identities=14% Similarity=0.152 Sum_probs=64.2
Q ss_pred HHHHHHHHHcCCCEEEecc-cc-cccccCCCCCCChhhHHHHHHHHHHHHHcC-CcceEeecCCCCchhHHhhhCCCCCh
Q 012181 83 KEDVKLMADTGLDAYRFSI-SW-SRLIPNGRGPVNPKGLQYYNNLINELISYG-IQPHVTLHHFDLPQALEDEYGGWINR 159 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si-~W-~ri~P~~~g~~n~~~~~~y~~~i~~l~~~g-i~p~vtL~H~~~P~~l~~~~ggw~~~ 159 (469)
+|.++.|+++|+|-+-+++ +- ..+...- |... ..+-..+.|+.+++.| +.+.++|. +++| -
T Consensus 163 ~e~l~~l~~aGvnRiSiGVQSf~d~vLk~l-gR~~--~~~~~~~~i~~l~~~g~~~v~~DlI-~GlP------------g 226 (449)
T PRK09058 163 DEKADAALDAGANRFSIGVQSFNTQVRRRA-GRKD--DREEVLARLEELVARDRAAVVCDLI-FGLP------------G 226 (449)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCHHHHHHh-CCCC--CHHHHHHHHHHHHhCCCCcEEEEEE-eeCC------------C
Confidence 7889999999999888887 33 2333332 3322 1345678899999999 55666653 3444 1
Q ss_pred hhHHHHHHHHHHHHHHhCCCceEEEEccCCccccccccccCCC
Q 012181 160 TIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIA 202 (469)
Q Consensus 160 ~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~g~~ 202 (469)
++.+.|.+=.+.+.+-=-+.|..+...-||+......+..|.+
T Consensus 227 qT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l 269 (449)
T PRK09058 227 QTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKL 269 (449)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCC
Confidence 3455555555555554346788888777887644333333444
No 114
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=40.54 E-value=1.4e+02 Score=30.34 Aligned_cols=109 Identities=15% Similarity=0.219 Sum_probs=69.2
Q ss_pred HHHHHHHHHcCCC-EEEeccc--cccccc-CCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCC
Q 012181 83 KEDVKLMADTGLD-AYRFSIS--WSRLIP-NGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWIN 158 (469)
Q Consensus 83 ~eDi~l~~~lG~~-~~R~si~--W~ri~P-~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~ 158 (469)
+|.+++|+++|++ .+=++++ =.++.- .-.-..+ .+-+.+.++.++++||.+.+.+. +.+| +...
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t---~~~~~~ai~~~~~~Gi~v~~~~i-~G~P--------~~se 184 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKGST---FEDFIRAAELARKYGAGVKAYLL-FKPP--------FLSE 184 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCC---HHHHHHHHHHHHHcCCcEEEEEE-ecCC--------CCCh
Confidence 7889999999998 4666662 223331 1111234 55688999999999999766653 2333 1122
Q ss_pred hhhHHHHHHHHHHHHHHhCCCceEEEEccCCccccccccccCCCCC
Q 012181 159 RTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIAPP 204 (469)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~g~~~P 204 (469)
.++++.+.+.++.+.. +++.|....+.=+|+.....-|..|.|.|
T Consensus 185 ~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 185 KEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred hhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 3678888888887765 45778877666566654333355566644
No 115
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=39.43 E-value=29 Score=34.63 Aligned_cols=47 Identities=23% Similarity=0.203 Sum_probs=31.9
Q ss_pred CCCeEEEEeeecccccc-ccCCccceeeeEEEcCCCCCCCccccchHHHHHHHHh
Q 012181 390 GSNIRGYFMWSFLDVFE-LMDGYESSYGLYYVDRDDPDLKRYPKLSAHWYSQFLK 443 (469)
Q Consensus 390 Gv~V~GY~~WSl~Dn~E-W~~Gy~~rfGL~~VD~~~~~~~R~~K~S~~~y~~ii~ 443 (469)
.-.+.|-++|+..|-.. -..+-..-.||+. ..|+||++++.||++-.
T Consensus 247 ~~~~~g~~~w~~~Df~~~~~~~~~~~nGlv~-------~dR~pK~~~~~~k~~~~ 294 (298)
T PF02836_consen 247 DPYVAGEFYWTGFDFGTEPTDYEFEYNGLVD-------YDRRPKPAYYEYKSQWS 294 (298)
T ss_dssp ETTESEEEEEETTTTSCSSBTGGGGSBESBE-------TTSEBBHHHHHHHHHHH
T ss_pred cccccceeeecceEeccCCCCCeeeeccEEC-------CcCCcCHHHHHHHHHhh
Confidence 34578899999988544 1111112238885 66899999999998753
No 116
>PRK14706 glycogen branching enzyme; Provisional
Probab=39.33 E-value=1.4e+02 Score=33.58 Aligned_cols=90 Identities=19% Similarity=0.202 Sum_probs=52.6
Q ss_pred HHHHHHcCCCEEEecccccccccCC-C-CC-------CCh--hhHHHHHHHHHHHHHcCCcceEee--cCCC--------
Q 012181 86 VKLMADTGLDAYRFSISWSRLIPNG-R-GP-------VNP--KGLQYYNNLINELISYGIQPHVTL--HHFD-------- 144 (469)
Q Consensus 86 i~l~~~lG~~~~R~si~W~ri~P~~-~-g~-------~n~--~~~~~y~~~i~~l~~~gi~p~vtL--~H~~-------- 144 (469)
+..+|+||++++-+.=-=. .|.. . |. ++. -..+=++.+|++|.++||++|+.+ .|+.
T Consensus 174 ~~ylk~lG~t~velmPv~e--~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~ 251 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVME--HPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAH 251 (639)
T ss_pred HHHHHHcCCCEEEccchhc--CCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhc
Confidence 3679999999976432100 0110 0 10 000 113448999999999999999985 3542
Q ss_pred ---Cchh-HHhhhCC----C-------CChhhHHHHHHHHHHHHHHhC
Q 012181 145 ---LPQA-LEDEYGG----W-------INRTIVKDFTAYADVCFRQFG 177 (469)
Q Consensus 145 ---~P~~-l~~~~gg----w-------~~~~~~~~f~~ya~~~~~~~g 177 (469)
.|.+ ..+...| | .++++.+.+.+=++.-+++|+
T Consensus 252 ~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 252 FDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred cCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1211 0000011 2 267788888888888888885
No 117
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=38.81 E-value=1.2e+02 Score=30.97 Aligned_cols=90 Identities=16% Similarity=0.254 Sum_probs=63.5
Q ss_pred HHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhhHHH
Q 012181 85 DVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKD 164 (469)
Q Consensus 85 Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~ 164 (469)
+.+.+|++|.++..|=+-|. |+....+|..-.++.+++.++|++++|--++-+.-+|.+.- +. + +.+....
T Consensus 111 s~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~~~--~~-~---~~~yak~ 181 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNIP--DN-G---SVEFAKV 181 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCCChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCCC--CC-C---cHHHHHh
Confidence 47899999999999998886 44334578888999999999999999999999887765531 11 1 1222222
Q ss_pred HHHHHHHHHHHhCC---CceEE
Q 012181 165 FTAYADVCFRQFGD---RVSYW 183 (469)
Q Consensus 165 f~~ya~~~~~~~gd---~v~~w 183 (469)
--+.+-..++.|++ .|+.|
T Consensus 182 kP~~V~~a~kefs~~~~gvDVl 203 (325)
T TIGR01232 182 KPRKVNEAMKLFSEPRFNVDVL 203 (325)
T ss_pred ChHHHHHHHHHhccCCCCCcEE
Confidence 23344455667766 57776
No 118
>PLN02389 biotin synthase
Probab=38.51 E-value=84 Score=32.90 Aligned_cols=57 Identities=21% Similarity=0.197 Sum_probs=43.1
Q ss_pred ChHHHHHHHHHcCCCEEEecccccc-cccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee
Q 012181 81 KYKEDVKLMADTGLDAYRFSISWSR-LIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (469)
Q Consensus 81 ry~eDi~l~~~lG~~~~R~si~W~r-i~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 140 (469)
.-+|.++.||++|++.|-.+++=++ +.|+-...-+ ++...+.++.+++.||++..++
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s---~e~rl~ti~~a~~~Gi~v~sg~ 233 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRS---YDDRLETLEAVREAGISVCSGG 233 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCC---HHHHHHHHHHHHHcCCeEeEEE
Confidence 4589999999999999999886233 4554312223 7778899999999999887664
No 119
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=38.28 E-value=84 Score=30.91 Aligned_cols=77 Identities=14% Similarity=0.086 Sum_probs=53.6
Q ss_pred HHHHHHHHHcC----CCEEEecccccccc--cCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCC
Q 012181 83 KEDVKLMADTG----LDAYRFSISWSRLI--PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGW 156 (469)
Q Consensus 83 ~eDi~l~~~lG----~~~~R~si~W~ri~--P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw 156 (469)
.+|++...+.| ++.+|+.++-|.+. -+- +.--.+.++...+.++.+++.|++..+++.+ .+
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~-~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~- 138 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKL-KKTREEVLERAVEAVEYAKSHGLDVEFSAED-----------AT- 138 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCeEEEeeec-----------CC-
Confidence 79999999999 99999977655443 332 3223456888899999999999987755422 12
Q ss_pred CChhhHHHHHHHHHHHHH
Q 012181 157 INRTIVKDFTAYADVCFR 174 (469)
Q Consensus 157 ~~~~~~~~f~~ya~~~~~ 174 (469)
+...+.+.++++.+.+
T Consensus 139 --~~~~~~~~~~~~~~~~ 154 (268)
T cd07940 139 --RTDLDFLIEVVEAAIE 154 (268)
T ss_pred --CCCHHHHHHHHHHHHH
Confidence 1235666777776654
No 120
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=38.25 E-value=2.2e+02 Score=27.87 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeec
Q 012181 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 141 (469)
.+|++...+.|++.+|+.++-+.+ .-..+.++.+++.|+++.+++.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~-------------~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEA-------------DVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhH-------------HHHHHHHHHHHHCCCeEEEEEE
Confidence 699999999999999998866643 2357789999999999988873
No 121
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=37.52 E-value=1.5e+02 Score=30.43 Aligned_cols=91 Identities=16% Similarity=0.208 Sum_probs=55.8
Q ss_pred HHHHHHHHHcCCCEEEecc-ccc-ccccCCCCC-CChhhHHHHHHHHHHHHHcCCcce-EeecCCCCchhHHhhhCCCCC
Q 012181 83 KEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGP-VNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWIN 158 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~g~-~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~ggw~~ 158 (469)
++.++.|+++|++.+-+++ +-+ ++...- |. .+ .+.+.+.++.+++.|+.++ +.| =+++|
T Consensus 100 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l-gR~~~---~~~~~~ai~~l~~~G~~~v~~dl-i~GlP------------ 162 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGVQSFRDDKLLFL-GRQHS---AKNIAPAIETALKSGIENISLDL-MYGLP------------ 162 (360)
T ss_pred HHHHHHHHHcCCCEEEEecccCChHHHHHh-CCCCC---HHHHHHHHHHHHHcCCCeEEEec-cCCCC------------
Confidence 7889999999999777777 343 444443 33 23 5668889999999999855 443 24444
Q ss_pred hhhHHHHHHHHHHHHHHhCCCceEEEEccCCc
Q 012181 159 RTIVKDFTAYADVCFRQFGDRVSYWTTVNEPN 190 (469)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~ 190 (469)
.++.+.|.+-.+.+.+.=-+.+..+...=||+
T Consensus 163 gqt~~~~~~~l~~~~~l~~~~is~y~l~~~~g 194 (360)
T TIGR00539 163 LQTLNSLKEELKLAKELPINHLSAYALSVEPN 194 (360)
T ss_pred CCCHHHHHHHHHHHHccCCCEEEeecceEcCC
Confidence 23455666666665543223444444333444
No 122
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=37.49 E-value=4.1e+02 Score=26.57 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=32.7
Q ss_pred ccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCC
Q 012181 105 RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHF 143 (469)
Q Consensus 105 ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~ 143 (469)
+..|...|-++.+-+.-++++++.++++|-..++=|.|-
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~ 100 (327)
T cd02803 62 KGYPGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHA 100 (327)
T ss_pred cCCCCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCC
Confidence 344443377899999999999999999999999999984
No 123
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=37.36 E-value=91 Score=38.90 Aligned_cols=60 Identities=17% Similarity=0.274 Sum_probs=44.3
Q ss_pred ccChHHHHHHHHHcCCCEEEecccc---------------cccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee--c
Q 012181 79 YHKYKEDVKLMADTGLDAYRFSISW---------------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL--H 141 (469)
Q Consensus 79 y~ry~eDi~l~~~lG~~~~R~si~W---------------~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL--~ 141 (469)
+....+-+..+++||++++=+|=-+ .+|.|.- | +.+-++++++.++++||.+|+++ +
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~l-G-----~~edf~~Lv~~ah~~Gi~vilDiV~N 830 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEI-G-----GEEGFERFCAALKAHGLGQLLDIVPN 830 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCccc-C-----CHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 3445777999999999998655433 3455553 3 24458999999999999999986 5
Q ss_pred CCC
Q 012181 142 HFD 144 (469)
Q Consensus 142 H~~ 144 (469)
|..
T Consensus 831 H~~ 833 (1693)
T PRK14507 831 HMG 833 (1693)
T ss_pred ccC
Confidence 653
No 124
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=37.31 E-value=2.8e+02 Score=28.43 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=37.8
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeec
Q 012181 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 141 (469)
.+|++.+.+.|++.+|+....+.. +...+.++.+++.|++..+.+.
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~-------------d~~~~~i~~ak~~G~~v~~~l~ 135 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA-------------DVSEQHIGMARELGMDTVGFLM 135 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH-------------HHHHHHHHHHHHcCCeEEEEEE
Confidence 689999999999999988754432 2357899999999999888773
No 125
>PRK10426 alpha-glucosidase; Provisional
Probab=36.80 E-value=2.3e+02 Score=31.81 Aligned_cols=106 Identities=18% Similarity=0.213 Sum_probs=67.8
Q ss_pred hHHHHHHHHHcCCCEEEecc-cccccccCCCC-------CCChhhHHHHHHHHHHHHHcCCcceEeecCC---CCchhHH
Q 012181 82 YKEDVKLMADTGLDAYRFSI-SWSRLIPNGRG-------PVNPKGLQYYNNLINELISYGIQPHVTLHHF---DLPQALE 150 (469)
Q Consensus 82 y~eDi~l~~~lG~~~~R~si-~W~ri~P~~~g-------~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l~ 150 (469)
..+-++.+++.||..==+-| .|........| .+|.+-+--.+++|+.|++.|++.++.+.-+ +.|..-+
T Consensus 223 v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~e 302 (635)
T PRK10426 223 VQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLCEE 302 (635)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHHH
Confidence 34557788899876544433 57654322111 3455555556899999999999988887543 3333322
Q ss_pred hhh---------C---------------CCCChhhHHHHHHHHHHHHHHhCCCceEE-EEccCC
Q 012181 151 DEY---------G---------------GWINRTIVKDFTAYADVCFRQFGDRVSYW-TTVNEP 189 (469)
Q Consensus 151 ~~~---------g---------------gw~~~~~~~~f~~ya~~~~~~~gd~v~~w-~t~NEp 189 (469)
.+. | .++||+..+.|.+..+..+...| |+.| .=+||+
T Consensus 303 ~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~G--vdg~w~D~~E~ 364 (635)
T PRK10426 303 AAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLG--CSGWMADFGEY 364 (635)
T ss_pred HHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcC--CCEEeeeCCCC
Confidence 110 1 16799999999887766555555 6665 789994
No 126
>PRK14705 glycogen branching enzyme; Provisional
Probab=36.65 E-value=2.1e+02 Score=34.75 Aligned_cols=89 Identities=17% Similarity=0.190 Sum_probs=55.9
Q ss_pred HHH-HHHHHHcCCCEEEec--------cccc-------ccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee--cCCC
Q 012181 83 KED-VKLMADTGLDAYRFS--------ISWS-------RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL--HHFD 144 (469)
Q Consensus 83 ~eD-i~l~~~lG~~~~R~s--------i~W~-------ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL--~H~~ 144 (469)
.+. ++.+|+||++++=+. -+|- .+.|.- |. .+=++.+|++|.++||.+|+++ .|+.
T Consensus 768 ~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ry-Gt-----~~dfk~lVd~~H~~GI~VILD~V~nH~~ 841 (1224)
T PRK14705 768 AKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRF-GH-----PDEFRFLVDSLHQAGIGVLLDWVPAHFP 841 (1224)
T ss_pred HHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCccc-CC-----HHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence 344 689999999998643 1231 111121 22 3448999999999999999996 4652
Q ss_pred CchhHHhhh----------------CC-------CCChhhHHHHHHHHHHHHHHhC
Q 012181 145 LPQALEDEY----------------GG-------WINRTIVKDFTAYADVCFRQFG 177 (469)
Q Consensus 145 ~P~~l~~~~----------------gg-------w~~~~~~~~f~~ya~~~~~~~g 177 (469)
.=.|....+ .. +.++++.+.+.+=+..-+++|+
T Consensus 842 ~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 842 KDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred cchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 111111000 11 2356777888888888888884
No 127
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=35.94 E-value=1.5e+02 Score=34.05 Aligned_cols=104 Identities=15% Similarity=0.316 Sum_probs=66.2
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCC---CCCCChhhHHHHHHHHHHHHHcCCcceEeec---CCCCc----------
Q 012181 83 KEDVKLMADTGLDAYRFSISWSRLIPNG---RGPVNPKGLQYYNNLINELISYGIQPHVTLH---HFDLP---------- 146 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~~---~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---H~~~P---------- 146 (469)
++=++.+.++|+.. ++-|..|-=.. +=.+|+...-...++++.|+++|++-++++. +-+..
T Consensus 314 ~dvv~~~~~agiPl---d~~~~DiDyMd~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~ 390 (805)
T KOG1065|consen 314 RDVVENYRAAGIPL---DVIVIDIDYMDGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAK 390 (805)
T ss_pred HHHHHHHHHcCCCc---ceeeeehhhhhcccceeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhh
Confidence 34467788888872 33444443331 1346777777789999999999999999986 22222
Q ss_pred -hhHHh----------hhCC------CCChhhHHHHHHHHHHHHHHhCCCce---EEEEccCCcccc
Q 012181 147 -QALED----------EYGG------WINRTIVKDFTAYADVCFRQFGDRVS---YWTTVNEPNAFA 193 (469)
Q Consensus 147 -~~l~~----------~~gg------w~~~~~~~~f~~ya~~~~~~~gd~v~---~w~t~NEp~~~~ 193 (469)
.|+.+ -..| ++|+.++++|.+ .+++|.+.|. +|+-+|||.-+.
T Consensus 391 ~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~----~~~~fh~~vp~dg~wiDmnE~snf~ 453 (805)
T KOG1065|consen 391 DVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLD----ELKRFHDEVPFDGFWIDMNEPSNFP 453 (805)
T ss_pred ceeeecccCchhhhcccCCCcccccccCCchHHHHHHH----HHHhhcccCCccceEEECCCcccCC
Confidence 01110 0112 567766666544 4457888776 599999997554
No 128
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=35.91 E-value=1.4e+02 Score=31.60 Aligned_cols=106 Identities=20% Similarity=0.302 Sum_probs=65.7
Q ss_pred HHHHHHHHHcCCCE--EEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCC---CCc---hhHHhh--
Q 012181 83 KEDVKLMADTGLDA--YRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHF---DLP---QALEDE-- 152 (469)
Q Consensus 83 ~eDi~l~~~lG~~~--~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---~~P---~~l~~~-- 152 (469)
.+-++.+++.|+.. +=++..|..-.. .-.+|++-+.-.+++++.|+++|++.++.++-+ +-+ ..-..+
T Consensus 46 ~~~i~~~~~~~iP~d~~~iD~~~~~~~~--~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~~ 123 (441)
T PF01055_consen 46 REVIDRYRSNGIPLDVIWIDDDYQDGYG--DFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAKEK 123 (441)
T ss_dssp HHHHHHHHHTT--EEEEEE-GGGSBTTB--TT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHHHT
T ss_pred HHHHHHHHHcCCCccceecccccccccc--ccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHhhc
Confidence 66778888888764 444445655222 135676666668999999999999988776532 222 111111
Q ss_pred ------hCC----------------CCChhhHHHHHHHHHHHHHHhCCCceE-EEEccCCccc
Q 012181 153 ------YGG----------------WINRTIVKDFTAYADVCFRQFGDRVSY-WTTVNEPNAF 192 (469)
Q Consensus 153 ------~gg----------------w~~~~~~~~f~~ya~~~~~~~gd~v~~-w~t~NEp~~~ 192 (469)
..| |.|++..+.|.+..+.++..+| |+. |+=+|||..+
T Consensus 124 ~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G--vdg~w~D~~E~~~~ 184 (441)
T PF01055_consen 124 GYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYG--VDGWWLDFGEPSSF 184 (441)
T ss_dssp T-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST---SEEEEESTTTBSS
T ss_pred CceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccC--CceEEeecCCcccc
Confidence 112 6788889999887777776655 555 6899999864
No 129
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=35.83 E-value=2.1e+02 Score=25.72 Aligned_cols=55 Identities=11% Similarity=0.155 Sum_probs=38.6
Q ss_pred hHHHHHHHHHcCCCEEEeccc-ccc-cccCCCCCCChhhHHHHHHHHHHHHHcC-CcceEe
Q 012181 82 YKEDVKLMADTGLDAYRFSIS-WSR-LIPNGRGPVNPKGLQYYNNLINELISYG-IQPHVT 139 (469)
Q Consensus 82 y~eDi~l~~~lG~~~~R~si~-W~r-i~P~~~g~~n~~~~~~y~~~i~~l~~~g-i~p~vt 139 (469)
-++.++.|+++|++.+.+|+. ++. +...-....+ ++.+.+.++.+++.| +.+.+.
T Consensus 99 ~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~g~~~v~~~ 156 (216)
T smart00729 99 TEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHT---VEDVLEAVEKLREAGPIKVSTD 156 (216)
T ss_pred CHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCC---HHHHHHHHHHHHHhCCcceEEe
Confidence 378899999999999999996 543 2221111123 578899999999999 555443
No 130
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=35.38 E-value=2.2e+02 Score=29.36 Aligned_cols=87 Identities=15% Similarity=0.206 Sum_probs=63.2
Q ss_pred CcccCccccChHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHh
Q 012181 72 GDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALED 151 (469)
Q Consensus 72 ~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~ 151 (469)
+-+|.=||+ |+.-+. ..+.|+..+|+. + |.+-. -+..+.+++.++++|+..=+..+|-.++.-+.+
T Consensus 74 PlVADIHFd-~~lAl~-a~~~g~dkiRIN---------P-GNig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~ 139 (346)
T TIGR00612 74 PLVADIHFD-YRLAAL-AMAKGVAKVRIN---------P-GNIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERRLLE 139 (346)
T ss_pred CEEEeeCCC-cHHHHH-HHHhccCeEEEC---------C-CCCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHH
Confidence 345666776 444433 346799999874 3 54432 357899999999999999999999999999999
Q ss_pred hhCCCCChhhHHHHHHHHHHH
Q 012181 152 EYGGWINRTIVKDFTAYADVC 172 (469)
Q Consensus 152 ~~ggw~~~~~~~~f~~ya~~~ 172 (469)
+||+-+....++--.++++.+
T Consensus 140 kyg~~t~eamveSAl~~v~~l 160 (346)
T TIGR00612 140 KYGDATAEAMVQSALEEAAIL 160 (346)
T ss_pred HcCCCCHHHHHHHHHHHHHHH
Confidence 987645445566666666555
No 131
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=35.20 E-value=76 Score=36.87 Aligned_cols=58 Identities=24% Similarity=0.318 Sum_probs=43.4
Q ss_pred cChHHHHHHHHHcCCCEEEecc---------------cccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee--cC
Q 012181 80 HKYKEDVKLMADTGLDAYRFSI---------------SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL--HH 142 (469)
Q Consensus 80 ~ry~eDi~l~~~lG~~~~R~si---------------~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL--~H 142 (469)
....+-+..+++||++++=+|= .+.+|.|.- | +.+-+++++++++++||.+|+++ +|
T Consensus 20 ~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l-G-----t~e~f~~Lv~aah~~Gi~VIlDiV~NH 93 (879)
T PRK14511 20 DDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL-G-----GEEGLRRLAAALRAHGMGLILDIVPNH 93 (879)
T ss_pred HHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC-C-----CHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 3457889999999999885543 445566654 3 23458999999999999999986 45
Q ss_pred C
Q 012181 143 F 143 (469)
Q Consensus 143 ~ 143 (469)
-
T Consensus 94 ~ 94 (879)
T PRK14511 94 M 94 (879)
T ss_pred c
Confidence 4
No 132
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=34.98 E-value=1.2e+02 Score=30.23 Aligned_cols=83 Identities=13% Similarity=0.162 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCCcceEeec-CCCCchhHHhhhCCCCChh
Q 012181 83 KEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLH-HFDLPQALEDEYGGWINRT 160 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-H~~~P~~l~~~~ggw~~~~ 160 (469)
++|++...+.|++.+++.++=|...-... +.--++.++...+.++.++++|+++.+++. -|+.| +++ +.
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~------~~~---~~ 146 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCP------YEG---EV 146 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCC------CCC---CC
Confidence 78999999999999999986554422211 333467789999999999999999988875 35444 122 22
Q ss_pred hHHHHHHHHHHHHH
Q 012181 161 IVKDFTAYADVCFR 174 (469)
Q Consensus 161 ~~~~f~~ya~~~~~ 174 (469)
..+.+.++++.+.+
T Consensus 147 ~~~~~~~~~~~~~~ 160 (274)
T cd07938 147 PPERVAEVAERLLD 160 (274)
T ss_pred CHHHHHHHHHHHHH
Confidence 46777777777765
No 133
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=34.94 E-value=83 Score=36.36 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=43.4
Q ss_pred cChHHHHHHHHHcCCCEEEeccc---------------ccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee--cC
Q 012181 80 HKYKEDVKLMADTGLDAYRFSIS---------------WSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL--HH 142 (469)
Q Consensus 80 ~ry~eDi~l~~~lG~~~~R~si~---------------W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL--~H 142 (469)
....+-+..+++||++++=+|=- +.+|.|.- | +.+-+++++++++++||.+|+++ +|
T Consensus 16 ~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~l-G-----t~edf~~Lv~aah~~Gm~vIlDiVpNH 89 (825)
T TIGR02401 16 DDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPEL-G-----GEEGLRRLSEAARARGLGLIVDIVPNH 89 (825)
T ss_pred HHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCC-C-----CHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 34578899999999999865543 33444443 3 24558999999999999999985 56
Q ss_pred CC
Q 012181 143 FD 144 (469)
Q Consensus 143 ~~ 144 (469)
..
T Consensus 90 ~a 91 (825)
T TIGR02401 90 MA 91 (825)
T ss_pred cc
Confidence 54
No 134
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=34.89 E-value=1.4e+02 Score=33.17 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=58.6
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCc----hhHHhh------
Q 012181 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP----QALEDE------ 152 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P----~~l~~~------ 152 (469)
++|++.+.+.|++.+|+..+.+.+ +-....++.++++|++..+++..-+-| ..+.+.
T Consensus 94 ~~~v~~a~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~ 160 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFDALNDP-------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLE 160 (582)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHH
Confidence 556899999999999998766553 236777788888888888776654454 222110
Q ss_pred h----------CCCCChhhHHHHHHHHHHHHHHhCCCceEEEEccCCcc
Q 012181 153 Y----------GGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (469)
Q Consensus 153 ~----------ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 191 (469)
. .|...| ....+.++.+-++++ ..-...+-|-..+
T Consensus 161 ~Gad~I~i~Dt~G~~~P---~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gl 205 (582)
T TIGR01108 161 MGVDSICIKDMAGILTP---KAAYELVSALKKRFG-LPVHLHSHATTGM 205 (582)
T ss_pred cCCCEEEECCCCCCcCH---HHHHHHHHHHHHhCC-CceEEEecCCCCc
Confidence 0 344444 344555555666665 2234668787765
No 135
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=34.45 E-value=32 Score=21.51 Aligned_cols=17 Identities=35% Similarity=0.473 Sum_probs=8.7
Q ss_pred hhhHHHHHHHHHHHHhh
Q 012181 2 MLRLSFLLMYLLNLATS 18 (469)
Q Consensus 2 ~~~~~~~~~~~l~~~~~ 18 (469)
|+++-+.+..+++|+.|
T Consensus 7 mKkil~~l~a~~~LagC 23 (25)
T PF08139_consen 7 MKKILFPLLALFMLAGC 23 (25)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 45555555555545444
No 136
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=34.01 E-value=1.8e+02 Score=30.16 Aligned_cols=73 Identities=22% Similarity=0.374 Sum_probs=54.2
Q ss_pred HHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhhHHHHHHH
Q 012181 89 MADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAY 168 (469)
Q Consensus 89 ~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~y 168 (469)
..+.|+...|+. | |.+... -+..+.+++.++++|+..=+..+|-.++.-+.++||+-+....++--.++
T Consensus 97 a~~~G~~~iRIN-------P---GNig~~-~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~ 165 (360)
T PRK00366 97 AAEAGADALRIN-------P---GNIGKR-DERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRH 165 (360)
T ss_pred HHHhCCCEEEEC-------C---CCCCch-HHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHH
Confidence 347789999653 3 544210 24689999999999999999999999999999998653444556666666
Q ss_pred HHHH
Q 012181 169 ADVC 172 (469)
Q Consensus 169 a~~~ 172 (469)
++.+
T Consensus 166 ~~~l 169 (360)
T PRK00366 166 AKIL 169 (360)
T ss_pred HHHH
Confidence 6655
No 137
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=33.91 E-value=1.1e+02 Score=29.37 Aligned_cols=65 Identities=12% Similarity=0.122 Sum_probs=42.0
Q ss_pred ccChHHHHHHHHHcCCCEEEecccccccccCCC--CCCChhhHHHHHHHHHHHHHcCCcceEee-cCCCCc
Q 012181 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR--GPVNPKGLQYYNNLINELISYGIQPHVTL-HHFDLP 146 (469)
Q Consensus 79 y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~--g~~n~~~~~~y~~~i~~l~~~gi~p~vtL-~H~~~P 146 (469)
-+.+++=++.++++|.+.+++...+ .|... .+.....++..+++.+.+.+.||...+-. ++++.|
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~---~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGK---RPAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCC---CCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 3556677899999999999864322 12110 11223345667888888999999988754 444444
No 138
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=33.52 E-value=78 Score=36.24 Aligned_cols=88 Identities=13% Similarity=0.191 Sum_probs=55.6
Q ss_pred HHHHHHHHcCCCEEEeccccc---------------ccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeec--CCCC-
Q 012181 84 EDVKLMADTGLDAYRFSISWS---------------RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH--HFDL- 145 (469)
Q Consensus 84 eDi~l~~~lG~~~~R~si~W~---------------ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~--H~~~- 145 (469)
+-+..+|+||++++-+.=-.. .+.|.- |. .+-++++|++|.++||.+|+.+. |..-
T Consensus 255 ~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~-Gt-----p~dlk~LVd~aH~~GI~VilDvV~nH~~~~ 328 (758)
T PLN02447 255 DVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRS-GT-----PEDLKYLIDKAHSLGLRVLMDVVHSHASKN 328 (758)
T ss_pred HHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccccc-CC-----HHHHHHHHHHHHHCCCEEEEEecccccccc
Confidence 348999999999987653222 222221 21 24589999999999999999974 3211
Q ss_pred ------------chhHHhhhCC----C-------CChhhHHHHHHHHHHHHHHhC
Q 012181 146 ------------PQALEDEYGG----W-------INRTIVKDFTAYADVCFRQFG 177 (469)
Q Consensus 146 ------------P~~l~~~~gg----w-------~~~~~~~~f~~ya~~~~~~~g 177 (469)
+.|+.....| | .++++...+.+=++.-+++|+
T Consensus 329 ~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 329 TLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred ccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 2333211011 2 245677777887888888773
No 139
>PRK12568 glycogen branching enzyme; Provisional
Probab=33.33 E-value=77 Score=36.13 Aligned_cols=97 Identities=11% Similarity=0.144 Sum_probs=59.7
Q ss_pred ccChHHH-HHHHHHcCCCEEEec--------cccc-------ccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee--
Q 012181 79 YHKYKED-VKLMADTGLDAYRFS--------ISWS-------RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-- 140 (469)
Q Consensus 79 y~ry~eD-i~l~~~lG~~~~R~s--------i~W~-------ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL-- 140 (469)
|.-..+. +..+|+||++++=+. -+|- .+.|.- |. .+-++.+|++|.++||.+|+++
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~-G~-----~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARH-GS-----PDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCccc-CC-----HHHHHHHHHHHHHCCCEEEEEecc
Confidence 3334444 689999999988543 2342 222221 32 4458999999999999999996
Q ss_pred cCCCCc-----------hhHH-h-h---hCC-------CCChhhHHHHHHHHHHHHHHhCCCceEE
Q 012181 141 HHFDLP-----------QALE-D-E---YGG-------WINRTIVKDFTAYADVCFRQFGDRVSYW 183 (469)
Q Consensus 141 ~H~~~P-----------~~l~-~-~---~gg-------w~~~~~~~~f~~ya~~~~~~~gd~v~~w 183 (469)
.|+.-- .+-+ + . +.. +.++++.+.+.+=+..-+++|+ |+-|
T Consensus 342 nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh--IDG~ 405 (730)
T PRK12568 342 AHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH--LDGL 405 (730)
T ss_pred ccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC--ceEE
Confidence 354311 1100 0 0 112 3367778888888888888885 4444
No 140
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=33.09 E-value=1.2e+02 Score=26.80 Aligned_cols=60 Identities=10% Similarity=0.125 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHHHhCCC
Q 012181 116 PKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDR 179 (469)
Q Consensus 116 ~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~ 179 (469)
....+=+.-+++.|++.|++|++.+.- -.+.|.. |-|.. ++..+.|.+=.+..++++|-+
T Consensus 32 SpEy~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wyd--ytG~~-~~~r~~~y~kI~~~~~~~gf~ 91 (130)
T PF04914_consen 32 SPEYDDLQLLLDVCKELGIDVLFVIQP-VNGKWYD--YTGLS-KEMRQEYYKKIKYQLKSQGFN 91 (130)
T ss_dssp -THHHHHHHHHHHHHHTT-EEEEEE-----HHHHH--HTT---HHHHHHHHHHHHHHHHTTT--
T ss_pred CccHHHHHHHHHHHHHcCCceEEEecC-CcHHHHH--HhCCC-HHHHHHHHHHHHHHHHHCCCE
Confidence 444666789999999999999999842 1345653 45544 677777777778888888853
No 141
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=32.94 E-value=96 Score=30.11 Aligned_cols=73 Identities=12% Similarity=0.097 Sum_probs=43.9
Q ss_pred cccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHHHhC
Q 012181 100 SISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFG 177 (469)
Q Consensus 100 si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g 177 (469)
.+.|..+.++|...... .......+++.++++|+++++.+..+....... -..+++.++.|++=+-..+++|+
T Consensus 27 ~~~f~~i~~~G~l~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~~ 99 (253)
T cd06545 27 NLAFANPDANGTLNANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSYN 99 (253)
T ss_pred EEEEEEECCCCeEEecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHhC
Confidence 33455665554211110 123467889999999999999987665432211 12366677777666666666664
No 142
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=32.88 E-value=5.4e+02 Score=26.13 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=33.3
Q ss_pred ccccc---CCCCCCChhhHHHHHHHHHHHHHcCCcceEeecC
Q 012181 104 SRLIP---NGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH 142 (469)
Q Consensus 104 ~ri~P---~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H 142 (469)
++..| ...+-++.+-+..++++.+.++++|-..++=|+|
T Consensus 63 ~~~~~~~~~~~~~~~d~~i~~~~~l~~~vh~~G~~~~~Ql~h 104 (338)
T cd04733 63 HLEEPGIIGNVVLESGEDLEAFREWAAAAKANGALIWAQLNH 104 (338)
T ss_pred cccCCCcCCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEccC
Confidence 46666 3236788999999999999999999999999999
No 143
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=32.86 E-value=98 Score=31.11 Aligned_cols=62 Identities=16% Similarity=0.372 Sum_probs=45.4
Q ss_pred hHHHHHHHHHcCCCEEEeccc----ccc---cccC------------CCCCCChhhHHHHHHHHHHHHHcCCcceEeecC
Q 012181 82 YKEDVKLMADTGLDAYRFSIS----WSR---LIPN------------GRGPVNPKGLQYYNNLINELISYGIQPHVTLHH 142 (469)
Q Consensus 82 y~eDi~l~~~lG~~~~R~si~----W~r---i~P~------------~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H 142 (469)
.++-|+.|+..++|.+-+-++ |+- ..|+ +.|.+.++- ++++++.++++||++|.-+
T Consensus 18 lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~d---i~elv~yA~~rgI~viPEi-- 92 (303)
T cd02742 18 IKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQ---LKDIIEYAAARGIEVIPEI-- 92 (303)
T ss_pred HHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHH---HHHHHHHHHHcCCEEEEec--
Confidence 367799999999998877765 521 2222 114566444 7999999999999999886
Q ss_pred CCCchhH
Q 012181 143 FDLPQAL 149 (469)
Q Consensus 143 ~~~P~~l 149 (469)
|+|...
T Consensus 93 -D~PGH~ 98 (303)
T cd02742 93 -DMPGHS 98 (303)
T ss_pred -cchHHH
Confidence 888554
No 144
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=32.65 E-value=98 Score=35.09 Aligned_cols=55 Identities=13% Similarity=0.221 Sum_probs=35.5
Q ss_pred HHHHHHcCCCEEEeccccccc----------------ccCCCCCCChh-----hHHHHHHHHHHHHHcCCcceEee
Q 012181 86 VKLMADTGLDAYRFSISWSRL----------------IPNGRGPVNPK-----GLQYYNNLINELISYGIQPHVTL 140 (469)
Q Consensus 86 i~l~~~lG~~~~R~si~W~ri----------------~P~~~g~~n~~-----~~~~y~~~i~~l~~~gi~p~vtL 140 (469)
++.+|+||++++=+.=--.-. -|..--.++.. .++=+++||++|+++||++|+.+
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 889999999998654211100 01000011111 25669999999999999999996
No 145
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=32.48 E-value=81 Score=32.40 Aligned_cols=70 Identities=19% Similarity=0.237 Sum_probs=47.8
Q ss_pred HHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhhHHH
Q 012181 85 DVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKD 164 (469)
Q Consensus 85 Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~ 164 (469)
=|++|.+.|++-+=.|+ .+|++ .+...++.++++++.+.+.|+++||+. -|+-|.. =||. ...++.
T Consensus 21 Yi~~~~~~Gf~~IFtsl----~~~~~---~~~~~~~~~~ell~~Anklg~~vivDv----nPsil~~--l~~S-~~~l~~ 86 (360)
T COG3589 21 YIDRMHKYGFKRIFTSL----LIPEE---DAELYFHRFKELLKEANKLGLRVIVDV----NPSILKE--LNIS-LDNLSR 86 (360)
T ss_pred HHHHHHHcCccceeeec----ccCCc---hHHHHHHHHHHHHHHHHhcCcEEEEEc----CHHHHhh--cCCC-hHHHHH
Confidence 37778888887654443 33443 344689999999999999999999997 4666643 2443 344555
Q ss_pred HHHH
Q 012181 165 FTAY 168 (469)
Q Consensus 165 f~~y 168 (469)
|.+.
T Consensus 87 f~e~ 90 (360)
T COG3589 87 FQEL 90 (360)
T ss_pred HHHh
Confidence 5544
No 146
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=32.34 E-value=1e+02 Score=31.59 Aligned_cols=63 Identities=21% Similarity=0.351 Sum_probs=44.5
Q ss_pred hHHHHHHHHHcCCCEEEecc-----------cccccccCC---------CCCCChhhHHHHHHHHHHHHHcCCcceEeec
Q 012181 82 YKEDVKLMADTGLDAYRFSI-----------SWSRLIPNG---------RGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (469)
Q Consensus 82 y~eDi~l~~~lG~~~~R~si-----------~W~ri~P~~---------~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 141 (469)
.++-|+.|+..++|.+-+-+ .++.+-..+ .|.+..+ -++++++.++++||++|.-+
T Consensus 20 lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~---di~elv~yA~~rgI~vIPEi- 95 (329)
T cd06568 20 VKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQE---DYKDIVAYAAERHITVVPEI- 95 (329)
T ss_pred HHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHH---HHHHHHHHHHHcCCEEEEec-
Confidence 47779999999999776555 233333221 1345533 47999999999999999886
Q ss_pred CCCCchhHH
Q 012181 142 HFDLPQALE 150 (469)
Q Consensus 142 H~~~P~~l~ 150 (469)
|+|....
T Consensus 96 --D~PGH~~ 102 (329)
T cd06568 96 --DMPGHTN 102 (329)
T ss_pred --CCcHHHH
Confidence 8886553
No 147
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=31.59 E-value=6.4e+02 Score=26.55 Aligned_cols=132 Identities=17% Similarity=0.236 Sum_probs=80.3
Q ss_pred HHHHHHHHHcCCCEEEecccccc-----------cccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeec----------
Q 012181 83 KEDVKLMADTGLDAYRFSISWSR-----------LIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH---------- 141 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~r-----------i~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---------- 141 (469)
.+-++.++++|++.|=+.=-|-. .+|++ .+| +.| ...+++.+++.||++=+=+-
T Consensus 61 ~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~-~kF-P~G---l~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l 135 (394)
T PF02065_consen 61 LELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDP-KKF-PNG---LKPLADYIHSLGMKFGLWFEPEMVSPDSDL 135 (394)
T ss_dssp HHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBT-TTS-TTH---HHHHHHHHHHTT-EEEEEEETTEEESSSCH
T ss_pred HHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeECh-hhh-CCc---HHHHHHHHHHCCCeEEEEeccccccchhHH
Confidence 55688899999999888888964 33443 222 124 68999999999999754331
Q ss_pred CCCCchhHHhhhCC-------------CCChhhHHHHHHHHHHHHHHhCCCceEE-EEccCCccccccccccCCCCCCCC
Q 012181 142 HFDLPQALEDEYGG-------------WINRTIVKDFTAYADVCFRQFGDRVSYW-TTVNEPNAFANLGYDYGIAPPQRC 207 (469)
Q Consensus 142 H~~~P~~l~~~~gg-------------w~~~~~~~~f~~ya~~~~~~~gd~v~~w-~t~NEp~~~~~~gy~~g~~~Pg~~ 207 (469)
--.+|.|+... ++ ..+|++.++..+-...+++.+| |+|. .=+|..-. .++..
T Consensus 136 ~~~hPdw~l~~-~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g--idYiK~D~n~~~~-----------~~~~~ 201 (394)
T PF02065_consen 136 YREHPDWVLRD-PGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG--IDYIKWDFNRDIT-----------EAGSP 201 (394)
T ss_dssp CCSSBGGBTCC-TTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT---SEEEEE-TS-TT-----------S-SST
T ss_pred HHhCccceeec-CCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC--CCEEEeccccCCC-----------CCCCC
Confidence 12578887532 11 3477888888888888888886 6665 34554321 11111
Q ss_pred CCccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHccC
Q 012181 208 SSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQD 246 (469)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~ 246 (469)
. .. .+.|...++--+..+.+++.+|.
T Consensus 202 ~-----------~~--~~~~~~~~~~y~l~~~L~~~~P~ 227 (394)
T PF02065_consen 202 S-----------LP--EGYHRYVLGLYRLLDRLRARFPD 227 (394)
T ss_dssp T-----------S---GHHHHHHHHHHHHHHHHHHHTTT
T ss_pred C-----------ch--HHHHHHHHHHHHHHHHHHHhCCC
Confidence 0 01 35566666666677888888775
No 148
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=31.44 E-value=2e+02 Score=30.15 Aligned_cols=102 Identities=17% Similarity=0.242 Sum_probs=62.3
Q ss_pred HHHHHHHHHcCCCEEEecc-cc-cccccCCCCC-CChhhHHHHHHHHHHHHHcCCc-ceEeecCCCCchhHHhhhCCCCC
Q 012181 83 KEDVKLMADTGLDAYRFSI-SW-SRLIPNGRGP-VNPKGLQYYNNLINELISYGIQ-PHVTLHHFDLPQALEDEYGGWIN 158 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si-~W-~ri~P~~~g~-~n~~~~~~y~~~i~~l~~~gi~-p~vtL~H~~~P~~l~~~~ggw~~ 158 (469)
++.++.|+++|+|.+-+++ +- .++...- |+ .+ .+-..+.++.+++.|+. +-++|. +++|.
T Consensus 115 ~e~l~~l~~~GvnrislGvQS~~d~~L~~l-~R~~~---~~~~~~ai~~l~~~G~~~v~~dlI-~GlPg----------- 178 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGVQAFQDELLALC-GRSHR---VKDIFAAVDLIHQAGIENFSLDLI-SGLPH----------- 178 (400)
T ss_pred HHHHHHHHHCCCCEEEEEcccCCHHHHHHh-CCCCC---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC-----------
Confidence 6889999999999777766 22 2333332 22 23 34467789999999998 556653 34441
Q ss_pred hhhHHHHHHHHHHHHHHhCCCceEEEEccCCccccccccccCC
Q 012181 159 RTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGI 201 (469)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~g~ 201 (469)
++.+.|.+=.+.+.+-=-++|..+...-||+.....-+..|.
T Consensus 179 -qt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~ 220 (400)
T PRK07379 179 -QTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGK 220 (400)
T ss_pred -CCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCC
Confidence 345555555555554434677777767777754433343343
No 149
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=30.81 E-value=70 Score=31.67 Aligned_cols=81 Identities=15% Similarity=0.078 Sum_probs=56.0
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhh
Q 012181 83 KEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTI 161 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~ 161 (469)
+.+++.+++.|++.+|+.++=|...-... +.--++.++...+.++.+++.|+++.++.-+| .+ +. +..
T Consensus 81 ~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~------~d--~~---~~~ 149 (273)
T cd07941 81 DPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF------FD--GY---KAN 149 (273)
T ss_pred hHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec------cc--cC---CCC
Confidence 46899999999999999886554332211 33346678999999999999999998876555 11 11 123
Q ss_pred HHHHHHHHHHHHH
Q 012181 162 VKDFTAYADVCFR 174 (469)
Q Consensus 162 ~~~f~~ya~~~~~ 174 (469)
.+.+.++++.+.+
T Consensus 150 ~~~~~~~~~~~~~ 162 (273)
T cd07941 150 PEYALATLKAAAE 162 (273)
T ss_pred HHHHHHHHHHHHh
Confidence 5566667766654
No 150
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=30.54 E-value=1.7e+02 Score=28.00 Aligned_cols=67 Identities=19% Similarity=0.407 Sum_probs=40.2
Q ss_pred cChHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCCh
Q 012181 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINR 159 (469)
Q Consensus 80 ~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~ 159 (469)
-.-+.=++++++||.++..| +|-+ |.-- ++=|+.+-+.+.++|+..=.| ||..
T Consensus 135 V~vetAiaml~dmG~~SiKf-------fPm~-Gl~~---leE~~avAkA~a~~g~~lEPT--------------GGId-- 187 (218)
T PF07071_consen 135 VPVETAIAMLKDMGGSSIKF-------FPMG-GLKH---LEELKAVAKACARNGFTLEPT--------------GGID-- 187 (218)
T ss_dssp EEHHHHHHHHHHTT--EEEE----------T-TTTT---HHHHHHHHHHHHHCT-EEEEB--------------SS----
T ss_pred ccHHHHHHHHHHcCCCeeeE-------eecC-Cccc---HHHHHHHHHHHHHcCceeCCc--------------CCcC--
Confidence 34577899999999999987 6776 5433 556788888888888754222 5554
Q ss_pred hhHHHHHHHHHHHHHH
Q 012181 160 TIVKDFTAYADVCFRQ 175 (469)
Q Consensus 160 ~~~~~f~~ya~~~~~~ 175 (469)
.+.|....+.|.+.
T Consensus 188 --l~N~~~I~~i~l~a 201 (218)
T PF07071_consen 188 --LDNFEEIVKICLDA 201 (218)
T ss_dssp --TTTHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHc
Confidence 44566666666554
No 151
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=30.33 E-value=53 Score=23.83 Aligned_cols=23 Identities=17% Similarity=0.132 Sum_probs=13.5
Q ss_pred ChhhHHHHHHHHHHHHhhhhhcc
Q 012181 1 MMLRLSFLLMYLLNLATSALTAV 23 (469)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~ 23 (469)
||+++-.+++++|++++..++|.
T Consensus 1 MmKk~i~~i~~~l~~~~~l~~Cn 23 (48)
T PRK10081 1 MVKKTIAAIFSVLVLSTVLTACN 23 (48)
T ss_pred ChHHHHHHHHHHHHHHHHHhhhh
Confidence 66665555555555555556664
No 152
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=28.57 E-value=1.5e+02 Score=29.52 Aligned_cols=108 Identities=13% Similarity=0.193 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCCC--EEEecccccccc--c---C--CCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCC-C-ch---h
Q 012181 83 KEDVKLMADTGLD--AYRFSISWSRLI--P---N--GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFD-L-PQ---A 148 (469)
Q Consensus 83 ~eDi~l~~~lG~~--~~R~si~W~ri~--P---~--~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~-~-P~---~ 148 (469)
++=++.+++.||. ++=+.+.|..-. + + ..=.+|++-+--.++||+.|++.|++.++.++-.. . |. .
T Consensus 28 ~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y 107 (292)
T cd06595 28 LALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQY 107 (292)
T ss_pred HHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHH
Confidence 4445666666654 455555664321 1 1 01234555555568899999999999888775431 1 11 1
Q ss_pred --HHhhh-----------CCCCChhhHHHHHHHHHHHHHHhCCCce-EEEEccCCccc
Q 012181 149 --LEDEY-----------GGWINRTIVKDFTAYADVCFRQFGDRVS-YWTTVNEPNAF 192 (469)
Q Consensus 149 --l~~~~-----------ggw~~~~~~~~f~~ya~~~~~~~gd~v~-~w~t~NEp~~~ 192 (469)
+.... ..++||+..+.|.+-....+...| |+ +|.=+|||...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~G--idg~W~D~~E~~~~ 163 (292)
T cd06595 108 PEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQG--VDFWWLDWQQGNRT 163 (292)
T ss_pred HHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcC--CcEEEecCCCCccc
Confidence 11111 135677776665443333333333 55 57889999754
No 153
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=28.27 E-value=1.3e+02 Score=25.82 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCCEEEeccc-cccc-ccCCCCCCChhhHHHHHHHHHHHHHcCCcce
Q 012181 83 KEDVKLMADTGLDAYRFSIS-WSRL-IPNGRGPVNPKGLQYYNNLINELISYGIQPH 137 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~-W~ri-~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~ 137 (469)
++.++.++++|++.+++|++ -+.- ..+... ....++...+.++.|+++|+.++
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~~~ 144 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRIIN--RGKSFERVLEALERLKEAGIPRV 144 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS--STSHHHHHHHHHHHHHHTTSETE
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhhhc--CCCCHHHHHHHHHHHHHcCCCcE
Confidence 89999999999999999994 3321 111101 12246778899999999999963
No 154
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=27.98 E-value=1.9e+02 Score=28.86 Aligned_cols=58 Identities=26% Similarity=0.398 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCCcceEee
Q 012181 83 KEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTL 140 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 140 (469)
++|++...+.|++.+-+.++=|...-... +.=-++.++.+.++++.++++|+++-+++
T Consensus 77 ~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 77 KEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred HHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 89999999999999888876555444321 44467789999999999999999999888
No 155
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=27.81 E-value=1.8e+02 Score=29.21 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=44.4
Q ss_pred hHHHHHHHHHcCCCEEEecc----cccccccCC---CCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhH
Q 012181 82 YKEDVKLMADTGLDAYRFSI----SWSRLIPNG---RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQAL 149 (469)
Q Consensus 82 y~eDi~l~~~lG~~~~R~si----~W~ri~P~~---~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l 149 (469)
.++=|+.|+.+|+|.+-+=+ .++. .|.- .|.+..+. ++++++.++++||++|..+ |+|..+
T Consensus 19 lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~~yT~~e---i~ei~~yA~~~gI~vIPei---d~pGH~ 86 (301)
T cd06565 19 LKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRGAYTKEE---IREIDDYAAELGIEVIPLI---QTLGHL 86 (301)
T ss_pred HHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCCCcCHHH---HHHHHHHHHHcCCEEEecC---CCHHHH
Confidence 47889999999999877633 3322 2321 26677555 7999999999999999886 777554
No 156
>PRK10658 putative alpha-glucosidase; Provisional
Probab=27.60 E-value=3.2e+02 Score=30.88 Aligned_cols=101 Identities=17% Similarity=0.216 Sum_probs=62.5
Q ss_pred HHHHHHcCCC--EEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCC---CchhHHhh--------
Q 012181 86 VKLMADTGLD--AYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFD---LPQALEDE-------- 152 (469)
Q Consensus 86 i~l~~~lG~~--~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~---~P~~l~~~-------- 152 (469)
++.+++.|+. ++=+.+-|.+-.-...=.+|++-+---+.||+.|++.|++.++.+.-+- .|.+-..+
T Consensus 289 ~~~~r~~~iP~d~i~lD~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy~vk~ 368 (665)
T PRK10658 289 IDGMAERDLPLHVFHFDCFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGYLLKR 368 (665)
T ss_pred HHHHHHcCCCceEEEEchhhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCeEEEC
Confidence 5667777765 5666666754321111234544443457899999999999888775432 22221111
Q ss_pred ----------------hCCCCChhhHHHHHHHHHHHHHHhCCCceE-EEEccCC
Q 012181 153 ----------------YGGWINRTIVKDFTAYADVCFRQFGDRVSY-WTTVNEP 189 (469)
Q Consensus 153 ----------------~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~-w~t~NEp 189 (469)
.-.++||+..+.|.+..+.+.+ .| |+. |.=+||+
T Consensus 369 ~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d-~G--vdgfw~D~gE~ 419 (665)
T PRK10658 369 PDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLD-MG--VDCFKTDFGER 419 (665)
T ss_pred CCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHh-cC--CcEEEecCCce
Confidence 0126699999999888877554 44 554 6678986
No 157
>PRK07094 biotin synthase; Provisional
Probab=27.53 E-value=1.1e+02 Score=30.76 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHcCCCEEEeccc-c-cccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee
Q 012181 81 KYKEDVKLMADTGLDAYRFSIS-W-SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (469)
Q Consensus 81 ry~eDi~l~~~lG~~~~R~si~-W-~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 140 (469)
.-+|.++.|+++|++.+-++++ - .++...-....+ .+.+.+.++.+++.||.+..++
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s---~~~~~~~i~~l~~~Gi~v~~~~ 185 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMS---FENRIACLKDLKELGYEVGSGF 185 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCC---HHHHHHHHHHHHHcCCeecceE
Confidence 3489999999999999999884 3 244444212223 5678899999999999765443
No 158
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=27.48 E-value=68 Score=31.22 Aligned_cols=62 Identities=6% Similarity=-0.003 Sum_probs=40.5
Q ss_pred cccChHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee
Q 012181 78 GYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (469)
Q Consensus 78 ~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 140 (469)
...+++.-+++.+.+|.+++++.-......+.. ...-+..++.++.+.+.++++||+..+-.
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP-NVIWGRLAENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 345566778999999999999864322111111 11113446678888888999998776553
No 159
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=27.38 E-value=1.8e+02 Score=28.43 Aligned_cols=89 Identities=15% Similarity=0.221 Sum_probs=57.2
Q ss_pred HHHHHHHHHcCCC--EEEecccccccccCCCC--CCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCC
Q 012181 83 KEDVKLMADTGLD--AYRFSISWSRLIPNGRG--PVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWIN 158 (469)
Q Consensus 83 ~eDi~l~~~lG~~--~~R~si~W~ri~P~~~g--~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~ 158 (469)
.+-++.+++.|+. ++=+.+.|..-. +.- .+|.+-+.--+++|+.|+++|++.++.+.-+
T Consensus 27 ~~~~~~~~~~~iP~d~~~lD~~~~~~~--~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~--------------- 89 (265)
T cd06589 27 LEVIDGMRENDIPLDGFVLDDDYTDGY--GDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPY--------------- 89 (265)
T ss_pred HHHHHHHHHcCCCccEEEECcccccCC--ceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChh---------------
Confidence 5667777776665 555666665422 212 4566666667899999999999999876322
Q ss_pred hhhHHHHHHHHHHHHHHhCCCceE-EEEccCCccc
Q 012181 159 RTIVKDFTAYADVCFRQFGDRVSY-WTTVNEPNAF 192 (469)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~gd~v~~-w~t~NEp~~~ 192 (469)
+.+.|.+..+.+.... -|+. |+=+|||...
T Consensus 90 --v~~w~~~~~~~~~~~~--Gvdg~w~D~~E~~~~ 120 (265)
T cd06589 90 --IREWWAEVVKKLLVSL--GVDGFWTDMGEPSPG 120 (265)
T ss_pred --HHHHHHHHHHHhhccC--CCCEEeccCCCCCcC
Confidence 2556655555443333 3555 6899999754
No 160
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=27.34 E-value=4.5e+02 Score=26.59 Aligned_cols=75 Identities=21% Similarity=0.236 Sum_probs=47.3
Q ss_pred CChhhHHHHHHHHHHHHHcCCcceEeecCC---CCchhHHhh--------------h-----------CCCCChhhHHHH
Q 012181 114 VNPKGLQYYNNLINELISYGIQPHVTLHHF---DLPQALEDE--------------Y-----------GGWINRTIVKDF 165 (469)
Q Consensus 114 ~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l~~~--------------~-----------ggw~~~~~~~~f 165 (469)
+|.+-+--.++||+.|++.|+++++.+.-+ +.+..+.+. + -.++||+.++.|
T Consensus 65 ~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww 144 (317)
T cd06594 65 WDPERYPGLDELIEELKARGIRVLTYINPYLADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWF 144 (317)
T ss_pred EChhhCCCHHHHHHHHHHCCCEEEEEecCceecCCchhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHH
Confidence 344444445788888888888888776544 223221110 0 115689999999
Q ss_pred HHHHHHHHHHhCCCceE-EEEccCCc
Q 012181 166 TAYADVCFRQFGDRVSY-WTTVNEPN 190 (469)
Q Consensus 166 ~~ya~~~~~~~gd~v~~-w~t~NEp~ 190 (469)
.+-.+......| |+. |.=+||+.
T Consensus 145 ~~~~~~~~~~~G--vdg~w~D~~E~~ 168 (317)
T cd06594 145 KQVIKEMLLDLG--LSGWMADFGEYL 168 (317)
T ss_pred HHHHHHHhhhcC--CcEEEecCCCCC
Confidence 888777655554 555 68999964
No 161
>PRK12677 xylose isomerase; Provisional
Probab=27.29 E-value=5e+02 Score=27.13 Aligned_cols=71 Identities=21% Similarity=0.254 Sum_probs=46.0
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcce-EeecCCCCchhHHhhhCCCCCh
Q 012181 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWINR 159 (469)
Q Consensus 82 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~ggw~~~ 159 (469)
.+|-++.++++|+..+=+.. ..+.|-. -..... -+..+++-+.++++||++. ++...|..|.+ +.|++.++
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~--~~l~p~~-~~~~~~-~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lts~ 104 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHD--DDLVPFG-ATDAER-DRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFTSN 104 (384)
T ss_pred HHHHHHHHHHhCCCEEEecc--cccCCCC-CChhhh-HHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCCCC
Confidence 48889999999999885522 2344442 111111 1246788888999999966 56555655644 24788875
No 162
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=27.29 E-value=62 Score=30.84 Aligned_cols=11 Identities=27% Similarity=0.365 Sum_probs=7.9
Q ss_pred CCCeeeeeccc
Q 012181 32 PGFLFGASTSA 42 (469)
Q Consensus 32 ~~FlwG~atsa 42 (469)
+.|-|.++.++
T Consensus 26 ~~~~W~~~~~~ 36 (216)
T PF11153_consen 26 PYFEWRFGVAA 36 (216)
T ss_pred CCCccEEEEec
Confidence 56788877763
No 163
>PRK01060 endonuclease IV; Provisional
Probab=27.03 E-value=3.4e+02 Score=26.40 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=36.9
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcce
Q 012181 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH 137 (469)
Q Consensus 82 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~ 137 (469)
+++-++.++++|++.+=+.+.-++.... +..+.+. .+++-+.+.++|++..
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~--~~~~~~~---~~~lk~~~~~~gl~~~ 64 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKR--KPLEELN---IEAFKAACEKYGISPE 64 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcC--CCCCHHH---HHHHHHHHHHcCCCCC
Confidence 6888999999999999998765554332 3455444 4556667889999853
No 164
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=26.91 E-value=1.3e+02 Score=28.61 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=55.9
Q ss_pred HHHHHH----HHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCC
Q 012181 83 KEDVKL----MADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWI 157 (469)
Q Consensus 83 ~eDi~l----~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~ 157 (469)
++|++. +++.|++.+|+.++=+....... +.--++.++...++++.+++.|++..+++-+.+
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~------------- 132 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDAS------------- 132 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG-------------
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc-------------
Confidence 566655 45699999999986655433321 333456788999999999999999988875431
Q ss_pred ChhhHHHHHHHHHHHHHH
Q 012181 158 NRTIVKDFTAYADVCFRQ 175 (469)
Q Consensus 158 ~~~~~~~f~~ya~~~~~~ 175 (469)
+...+.+.++++.+.+.
T Consensus 133 -~~~~~~~~~~~~~~~~~ 149 (237)
T PF00682_consen 133 -RTDPEELLELAEALAEA 149 (237)
T ss_dssp -GSSHHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHc
Confidence 22356777777777666
No 165
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=26.56 E-value=1.7e+02 Score=28.23 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHHHhC
Q 012181 119 LQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFG 177 (469)
Q Consensus 119 ~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g 177 (469)
.+...+.|..|++.|+++++++.-+.....+ ....+++.++.|++-+..++++||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 4557889999999999999998654432111 011345556666666666667665
No 166
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=26.37 E-value=1e+02 Score=30.22 Aligned_cols=61 Identities=7% Similarity=0.050 Sum_probs=40.0
Q ss_pred ccChHHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCCcceEeec
Q 012181 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (469)
Q Consensus 79 y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 141 (469)
-.+++.-+++++++|.+.++++-. ++.+... .+.-...++.++++.+.++++||...+-.+
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~ 154 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGY--DVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEIM 154 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCc--ccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeC
Confidence 345678899999999999998531 1111110 111123456777888899999998887643
No 167
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=25.41 E-value=2.3e+02 Score=29.25 Aligned_cols=79 Identities=19% Similarity=0.221 Sum_probs=58.8
Q ss_pred ccChHHHHHHHHHcCCCEEEecccccccccCC----CC--CCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhh
Q 012181 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNG----RG--PVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDE 152 (469)
Q Consensus 79 y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~----~g--~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~ 152 (469)
+-.=++=++.+.++|++-+-+|| .-+-|.. .| .+| +++-.++.+.+.+.||-.+++ |.|+-.
T Consensus 200 ~~L~~~lv~eLeeAGLdRiNlSv--~aLDpk~Ak~L~G~~dYd---v~kvle~aE~i~~a~idvlIa------Pv~lPG- 267 (414)
T COG2100 200 VLLSKKLVDELEEAGLDRINLSV--DALDPKLAKMLAGRKDYD---VKKVLEVAEYIANAGIDVLIA------PVWLPG- 267 (414)
T ss_pred eeccHHHHHHHHHhCCceEEeec--ccCCHHHHHHhcCccccC---HHHHHHHHHHHHhCCCCEEEe------eeecCC-
Confidence 33447779999999998666666 3444432 14 466 888999999999999999987 777732
Q ss_pred hCCCCChhhHHHHHHHHHHHH
Q 012181 153 YGGWINRTIVKDFTAYADVCF 173 (469)
Q Consensus 153 ~ggw~~~~~~~~f~~ya~~~~ 173 (469)
.|.+-...+.+||+.+-
T Consensus 268 ----~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 268 ----VNDDEMPKIIEWAREIG 284 (414)
T ss_pred ----cChHHHHHHHHHHHHhC
Confidence 56777888888888764
No 168
>PRK06256 biotin synthase; Validated
Probab=24.73 E-value=1.2e+02 Score=30.82 Aligned_cols=56 Identities=16% Similarity=0.247 Sum_probs=39.4
Q ss_pred ChHHHHHHHHHcCCCEEEecc-cccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEe
Q 012181 81 KYKEDVKLMADTGLDAYRFSI-SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVT 139 (469)
Q Consensus 81 ry~eDi~l~~~lG~~~~R~si-~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt 139 (469)
.-+|.++.|+++|++.+=+++ +=.++.+.-...-+ ++...+.++.+++.||++..+
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t---~~~~i~~i~~a~~~Gi~v~~~ 206 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHT---YEDRIDTCEMVKAAGIEPCSG 206 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhcCCCCC---HHHHHHHHHHHHHcCCeeccC
Confidence 347889999999999998877 32234443211123 667788999999999986544
No 169
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=24.68 E-value=1.3e+02 Score=30.95 Aligned_cols=62 Identities=19% Similarity=0.295 Sum_probs=42.9
Q ss_pred hHHHHHHHHHcCCCEEEeccc----cc-------ccccCC----CCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCc
Q 012181 82 YKEDVKLMADTGLDAYRFSIS----WS-------RLIPNG----RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (469)
Q Consensus 82 y~eDi~l~~~lG~~~~R~si~----W~-------ri~P~~----~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 146 (469)
.++-|+.|+..++|.+-+=+. |. .+-..+ .|.+..+ =++++|+.++++||++|.-+ |+|
T Consensus 20 ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~---di~eiv~yA~~rgI~vIPEI---D~P 93 (348)
T cd06562 20 IKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPE---DVKEIVEYARLRGIRVIPEI---DTP 93 (348)
T ss_pred HHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHH---HHHHHHHHHHHcCCEEEEec---cCc
Confidence 366789999999998776542 32 221111 1335544 47999999999999999886 888
Q ss_pred hhH
Q 012181 147 QAL 149 (469)
Q Consensus 147 ~~l 149 (469)
...
T Consensus 94 GH~ 96 (348)
T cd06562 94 GHT 96 (348)
T ss_pred hhh
Confidence 544
No 170
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=24.57 E-value=5.9e+02 Score=27.40 Aligned_cols=88 Identities=17% Similarity=0.279 Sum_probs=58.1
Q ss_pred cChHHHHHHHHHcCCCEEEecccccccccCC--CCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCC
Q 012181 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNG--RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWI 157 (469)
Q Consensus 80 ~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~--~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~ 157 (469)
.|.++-.++++++|+|..-+.= |--.. .--++..-+.-..++-|..+.+||+.++++ .|..|.-| ||..
T Consensus 183 qR~kDYAR~laSiGINg~v~NN----VNvk~~e~~lit~~fl~k~aklAdiFR~YGIK~yLsi-nfaSP~~l----GgL~ 253 (684)
T COG3661 183 QRMKDYARALASIGINGTVLNN----VNVKKAESYLITAPFLAKAAKLADIFRPYGIKVYLSI-NFASPMEL----GGLK 253 (684)
T ss_pred HHHHHHHHHHhhcCcceEEecc----cccchhhhheechHhHHHHHHHHHHhhhccceEEEEe-ccCCcccc----CCcC
Confidence 5667778899999999876531 11111 012455556777888899999999999997 57888765 6655
Q ss_pred -----ChhhHHHHHHHHHHHHHHh
Q 012181 158 -----NRTIVKDFTAYADVCFRQF 176 (469)
Q Consensus 158 -----~~~~~~~f~~ya~~~~~~~ 176 (469)
.+.+...|.+=|+.+.+-.
T Consensus 254 TADPLDe~VrawWkeka~~IY~yI 277 (684)
T COG3661 254 TADPLDEAVRAWWKEKADEIYKYI 277 (684)
T ss_pred cCCcccHHHHHHHHHHHHHHHHhc
Confidence 3344555555555555443
No 171
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=24.49 E-value=88 Score=28.44 Aligned_cols=62 Identities=11% Similarity=0.041 Sum_probs=40.8
Q ss_pred ccChHHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHcCCcceEee
Q 012181 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTL 140 (469)
Q Consensus 79 y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 140 (469)
....++-+++++.+|++.+++...+-...+... ..--....+.++.+.+.++++|+++.+-.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 132 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALEN 132 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEec
Confidence 456688899999999999999876411111110 11112345677888888899998876653
No 172
>PLN02960 alpha-amylase
Probab=24.30 E-value=1.9e+02 Score=33.75 Aligned_cols=94 Identities=6% Similarity=0.126 Sum_probs=58.3
Q ss_pred cccChHHH-HHHHHHcCCCEEEeccc--------c-------cccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee-
Q 012181 78 GYHKYKED-VKLMADTGLDAYRFSIS--------W-------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL- 140 (469)
Q Consensus 78 ~y~ry~eD-i~l~~~lG~~~~R~si~--------W-------~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL- 140 (469)
.|.-..+. +..+|+||++++=+.=- | -.+.|.- |. .+=++.+|++|.++||.+|+.+
T Consensus 414 tf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~y-Gt-----p~dfk~LVd~aH~~GI~VILDvV 487 (897)
T PLN02960 414 SFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRF-GT-----PDDFKRLVDEAHGLGLLVFLDIV 487 (897)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccccc-CC-----HHHHHHHHHHHHHCCCEEEEEec
Confidence 45555444 89999999999875421 1 1122221 22 2448999999999999999997
Q ss_pred -cCCCC--c--h---------hHHh--h--hCC-------CCChhhHHHHHHHHHHHHHHhC
Q 012181 141 -HHFDL--P--Q---------ALED--E--YGG-------WINRTIVKDFTAYADVCFRQFG 177 (469)
Q Consensus 141 -~H~~~--P--~---------~l~~--~--~gg-------w~~~~~~~~f~~ya~~~~~~~g 177 (469)
.|+.. | . ++.. . ... ..++++.+.+.+=++.-+++|+
T Consensus 488 ~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 488 HSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred ccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 45421 1 1 1110 0 001 2256777888888888888885
No 173
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=24.22 E-value=2.5e+02 Score=27.88 Aligned_cols=71 Identities=8% Similarity=-0.006 Sum_probs=50.5
Q ss_pred CccccChHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhH
Q 012181 76 CDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQAL 149 (469)
Q Consensus 76 ~d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l 149 (469)
.+..+...+-.+.+|++|+..+|-+..=+|--|...-.+-.+ .++.+-+.+++.||..+-+.++-..+..+
T Consensus 37 ie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~---gl~~l~~~~~~~Gl~~~te~~d~~~~~~l 107 (266)
T PRK13398 37 VESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEE---GLKILKEVGDKYNLPVVTEVMDTRDVEEV 107 (266)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHH---HHHHHHHHHHHcCCCEEEeeCChhhHHHH
Confidence 345566677788899999999999986677776542123344 46667777899999999998765444444
No 174
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=24.04 E-value=2.4e+02 Score=28.12 Aligned_cols=84 Identities=10% Similarity=0.110 Sum_probs=55.4
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCC----chhHHhhhCCCCChhh
Q 012181 86 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDL----PQALEDEYGGWINRTI 161 (469)
Q Consensus 86 i~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~----P~~l~~~~ggw~~~~~ 161 (469)
.+.++..+-+.=-++..|-.|.|++ .+... ...++++.++++|+++++++..++- +.-+.. -..+++.
T Consensus 16 ~~~~~~~~~~lt~v~p~w~~~~~~g--~~~~~---~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~---~l~~~~~ 87 (313)
T cd02874 16 YESLRANAPYLTYIAPFWYGVDADG--TLTGL---PDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHA---VLSNPEA 87 (313)
T ss_pred HHHHHHhcCCCCEEEEEEEEEcCCC--CCCCC---CCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHH---HhcCHHH
Confidence 5667776666667788899998875 33322 2468999999999999999976541 111111 1235666
Q ss_pred HHHHHHHHHHHHHHhC
Q 012181 162 VKDFTAYADVCFRQFG 177 (469)
Q Consensus 162 ~~~f~~ya~~~~~~~g 177 (469)
.+.|++=+-.+++++|
T Consensus 88 r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 88 RQRLINNILALAKKYG 103 (313)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 7777776666677764
No 175
>PTZ00445 p36-lilke protein; Provisional
Probab=24.02 E-value=1.4e+02 Score=28.75 Aligned_cols=58 Identities=16% Similarity=0.218 Sum_probs=42.3
Q ss_pred HHHHHHHHcCCCEEEecccccccccCCCCCCChh---------hHHHHHHHHHHHHHcCCcceEeec
Q 012181 84 EDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPK---------GLQYYNNLINELISYGIQPHVTLH 141 (469)
Q Consensus 84 eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~---------~~~~y~~~i~~l~~~gi~p~vtL~ 141 (469)
.=++++++.|++++=+.+.=+-|----.|.+++. +-.-...++..|+++||..+|..+
T Consensus 33 ~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 33 KFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 3478899999999998887665552211433333 345578899999999999988875
No 176
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=23.93 E-value=59 Score=22.16 Aligned_cols=16 Identities=31% Similarity=0.241 Sum_probs=7.8
Q ss_pred hhhHHHHHHHHHHHHh
Q 012181 2 MLRLSFLLMYLLNLAT 17 (469)
Q Consensus 2 ~~~~~~~~~~~l~~~~ 17 (469)
|+-++++++++|++.+
T Consensus 1 Mk~l~~a~~l~lLal~ 16 (36)
T PF08194_consen 1 MKCLSLAFALLLLALA 16 (36)
T ss_pred CceeHHHHHHHHHHHH
Confidence 4445555555554433
No 177
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=23.92 E-value=2.7e+02 Score=26.93 Aligned_cols=79 Identities=19% Similarity=0.392 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhhH
Q 012181 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIV 162 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~ 162 (469)
++-++.++..|++..-=++.|+.-. ...++.+.+++++.+. .|..+=..-.|| | ...+
T Consensus 93 ~~~~~~~~~~~~~l~sPa~~~~~~~-------~~~g~~Wl~~F~~~~~-~~~~~D~iavH~---------Y-----~~~~ 150 (239)
T PF11790_consen 93 KQYMNPLRSPGVKLGSPAVAFTNGG-------TPGGLDWLSQFLSACA-RGCRVDFIAVHW---------Y-----GGDA 150 (239)
T ss_pred HHHHhHhhcCCcEEECCeecccCCC-------CCCccHHHHHHHHhcc-cCCCccEEEEec---------C-----CcCH
Confidence 3444445556666554444443221 2335779999999988 666665555666 3 1127
Q ss_pred HHHHHHHHHHHHHhCCCceEEEE
Q 012181 163 KDFTAYADVCFRQFGDRVSYWTT 185 (469)
Q Consensus 163 ~~f~~ya~~~~~~~gd~v~~w~t 185 (469)
+.|.++.+.+.++|| ...|+|
T Consensus 151 ~~~~~~i~~~~~~~~--kPIWIT 171 (239)
T PF11790_consen 151 DDFKDYIDDLHNRYG--KPIWIT 171 (239)
T ss_pred HHHHHHHHHHHHHhC--CCEEEE
Confidence 789999999999999 788987
No 178
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=23.82 E-value=1.4e+02 Score=29.79 Aligned_cols=60 Identities=20% Similarity=0.432 Sum_probs=43.4
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhh
Q 012181 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEY 153 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ 153 (469)
++=+++++++||+.+.+..- +.=++..+++|+++++.+.+++| +|.+|--..|.=++..|
T Consensus 109 ~~~f~~~~~~Gv~GvKidF~---------~~d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~~kPtG~~RTy 168 (273)
T PF10566_consen 109 DEAFKLYAKWGVKGVKIDFM---------DRDDQEMVNWYEDILEDAAEYKL--MVNFHGATKPTGLRRTY 168 (273)
T ss_dssp HHHHHHHHHCTEEEEEEE-----------SSTSHHHHHHHHHHHHHHHHTT---EEEETTS---TTHHHCS
T ss_pred HHHHHHHHHcCCCEEeeCcC---------CCCCHHHHHHHHHHHHHHHHcCc--EEEecCCcCCCcccccC
Confidence 66699999999999998762 23478889999999999999986 56666555776665433
No 179
>PRK05660 HemN family oxidoreductase; Provisional
Probab=23.80 E-value=3.7e+02 Score=27.91 Aligned_cols=93 Identities=14% Similarity=0.214 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCCCEEEecc-ccc-ccccCCCCCCChhhHHHHHHHHHHHHHcCCcce-EeecCCCCchhHHhhhCCCCCh
Q 012181 83 KEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWINR 159 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~ggw~~~ 159 (469)
++.++.|+++|++-+-+|| +=+ .+...- |... ..+...+.++.+++.|+.++ ++|. +++|.
T Consensus 107 ~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l-~r~~--~~~~~~~ai~~~~~~G~~~v~~dli-~Glpg------------ 170 (378)
T PRK05660 107 ADRFVGYQRAGVNRISIGVQSFSEEKLKRL-GRIH--GPDEAKRAAKLAQGLGLRSFNLDLM-HGLPD------------ 170 (378)
T ss_pred HHHHHHHHHcCCCEEEeccCcCCHHHHHHh-CCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC------------
Confidence 6999999999999777777 332 333332 2221 24556778999999999875 5552 44442
Q ss_pred hhHHHHHHHHHHHHHHhCCCceEEEEccCCcc
Q 012181 160 TIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (469)
Q Consensus 160 ~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 191 (469)
++.+.|.+-.+.+.+.=-+++..+...=||+.
T Consensus 171 qt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT 202 (378)
T PRK05660 171 QSLEEALDDLRQAIALNPPHLSWYQLTIEPNT 202 (378)
T ss_pred CCHHHHHHHHHHHHhcCCCeEEeeccEeccCC
Confidence 45667777777766654567777766666653
No 180
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=23.70 E-value=1.2e+02 Score=32.23 Aligned_cols=54 Identities=22% Similarity=0.425 Sum_probs=38.9
Q ss_pred HHHHHHHHcCCCEEEec-------------c-cccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee--cCC
Q 012181 84 EDVKLMADTGLDAYRFS-------------I-SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL--HHF 143 (469)
Q Consensus 84 eDi~l~~~lG~~~~R~s-------------i-~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL--~H~ 143 (469)
+-++.+++||+++.=++ + .+.+|.|. .-.++-.++++++++++||+.++++ .|-
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~------~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~ 102 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPH------FGTEEDFKELVEEAHKRGIKVILDLVFNHT 102 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcc------cCCHHHHHHHHHHHHHCCCEEEEEeccCcC
Confidence 66789999999987332 1 22333332 2246778999999999999999997 553
No 181
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=23.28 E-value=2.3e+02 Score=28.68 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=45.0
Q ss_pred hHHHHHHHHHcCCCEEEecc----cccc---cccCC------CCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchh
Q 012181 82 YKEDVKLMADTGLDAYRFSI----SWSR---LIPNG------RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQA 148 (469)
Q Consensus 82 y~eDi~l~~~lG~~~~R~si----~W~r---i~P~~------~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~ 148 (469)
.++=|+.|+..++|.+-+-+ +|.- -.|+- .|.+..+ -++++++.++++||++|.-+ |+|..
T Consensus 20 ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~---di~elv~yA~~rgI~vIPEI---d~PGH 93 (311)
T cd06570 20 IKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQE---QIREVVAYARDRGIRVVPEI---DVPGH 93 (311)
T ss_pred HHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHH---HHHHHHHHHHHcCCEEEEee---cCccc
Confidence 36668999999999877765 5642 33432 1346644 47999999999999999886 88854
Q ss_pred H
Q 012181 149 L 149 (469)
Q Consensus 149 l 149 (469)
.
T Consensus 94 ~ 94 (311)
T cd06570 94 A 94 (311)
T ss_pred h
Confidence 3
No 182
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=23.14 E-value=4.3e+02 Score=27.20 Aligned_cols=95 Identities=15% Similarity=0.117 Sum_probs=58.0
Q ss_pred HHHHHHHHHcCCCEEEecc-ccc-ccccCCCCCCChhhHHHHHHHHHHHHHcCCc-ceEeecCCCCchhHHhhhCCCCCh
Q 012181 83 KEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQ-PHVTLHHFDLPQALEDEYGGWINR 159 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~-p~vtL~H~~~P~~l~~~~ggw~~~ 159 (469)
+|.+++|+++|++.+-+++ +-+ ++...-....+ .+...+.++.+++.|+. +.++|. +++| .
T Consensus 108 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s---~~~~~~a~~~l~~~g~~~v~~dli-~GlP------------g 171 (375)
T PRK05628 108 PEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHT---PGRAVAAAREARAAGFEHVNLDLI-YGTP------------G 171 (375)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCcEEEEEe-ccCC------------C
Confidence 7889999999999777776 332 33333212233 45577899999999998 555542 2333 2
Q ss_pred hhHHHHHHHHHHHHHHhCCCceEEEEccCCcccc
Q 012181 160 TIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFA 193 (469)
Q Consensus 160 ~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~ 193 (469)
++.+.|.+=.+.+.+.=-+.+..+...-||+...
T Consensus 172 qt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l 205 (375)
T PRK05628 172 ESDDDWRASLDAALEAGVDHVSAYALIVEDGTAL 205 (375)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeeeeecCCCChH
Confidence 3456666666655543335566555444666443
No 183
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=23.12 E-value=1.5e+02 Score=30.53 Aligned_cols=67 Identities=15% Similarity=0.172 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhhH
Q 012181 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIV 162 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~ 162 (469)
.+|++...+.|++.+|+....++. +.-.+.++.+++.|++..+++..-. ....
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~-------------~~~~~~i~~ak~~G~~v~~~l~~a~--------------~~~~ 143 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA-------------DVSEQHIGLARELGMDTVGFLMMSH--------------MAPP 143 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH-------------HHHHHHHHHHHHCCCeEEEEEEecc--------------CCCH
Confidence 689999999999999998755543 2358899999999999999885321 1235
Q ss_pred HHHHHHHHHHHHHhC
Q 012181 163 KDFTAYADVCFRQFG 177 (469)
Q Consensus 163 ~~f~~ya~~~~~~~g 177 (469)
+.+.+.++.+. .+|
T Consensus 144 e~l~~~a~~~~-~~G 157 (337)
T PRK08195 144 EKLAEQAKLME-SYG 157 (337)
T ss_pred HHHHHHHHHHH-hCC
Confidence 56666666654 345
No 184
>PTZ00445 p36-lilke protein; Provisional
Probab=22.94 E-value=1.5e+02 Score=28.65 Aligned_cols=64 Identities=19% Similarity=0.329 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHcCCcceEeecCCCCchhHHh-hhCCCCChh---------hHHHHHHHHHHHHHHhCCCceEE-EEccC
Q 012181 120 QYYNNLINELISYGIQPHVTLHHFDLPQALED-EYGGWINRT---------IVKDFTAYADVCFRQFGDRVSYW-TTVNE 188 (469)
Q Consensus 120 ~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~-~~ggw~~~~---------~~~~f~~ya~~~~~~~gd~v~~w-~t~NE 188 (469)
+.-+.+++.|++.||+.+++= ||.= +.. .-|||.++. ....|......+-+. .++.- +||-.
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D--~DnT--lI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~---~I~v~VVTfSd 101 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASD--FDLT--MITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNS---NIKISVVTFSD 101 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEec--chhh--hhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHC---CCeEEEEEccc
Confidence 345889999999999999873 2221 111 138999887 455677765555442 34443 47766
Q ss_pred Cc
Q 012181 189 PN 190 (469)
Q Consensus 189 p~ 190 (469)
..
T Consensus 102 ~~ 103 (219)
T PTZ00445 102 KE 103 (219)
T ss_pred hh
Confidence 54
No 185
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=22.73 E-value=47 Score=26.12 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=16.7
Q ss_pred cCccccCh--HHHHHHHHHcCC
Q 012181 75 ACDGYHKY--KEDVKLMADTGL 94 (469)
Q Consensus 75 a~d~y~ry--~eDi~l~~~lG~ 94 (469)
-.|||..| .+|++.|+++|+
T Consensus 45 YadFYknYD~~kdFerM~~~G~ 66 (70)
T cd00927 45 YADFYKTYDAMKDFERMRKAGL 66 (70)
T ss_pred HHHHHHccChHHHHHHHHHcCC
Confidence 35788887 589999999996
No 186
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=22.65 E-value=3e+02 Score=29.30 Aligned_cols=78 Identities=10% Similarity=0.234 Sum_probs=48.5
Q ss_pred hHHHHHHHHHcCCCEEEeccc-cc-ccccCCCCCCChhhHHHHHHHHHHHHHcCCc-ceEeecCCCCchhHHhhhCCCCC
Q 012181 82 YKEDVKLMADTGLDAYRFSIS-WS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQ-PHVTLHHFDLPQALEDEYGGWIN 158 (469)
Q Consensus 82 y~eDi~l~~~lG~~~~R~si~-W~-ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~-p~vtL~H~~~P~~l~~~~ggw~~ 158 (469)
-+|.+++|+++|++.+.+++. =+ .+...-...-+ .+...+.++.+++.|+. +.++| -+++|
T Consensus 150 t~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~---~~~~~~ai~~l~~~G~~~v~~dl-i~GlP------------ 213 (453)
T PRK09249 150 DLEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQP---FEFTFALVEAARELGFTSINIDL-IYGLP------------ 213 (453)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCC---HHHHHHHHHHHHHcCCCcEEEEE-EccCC------------
Confidence 378999999999997777772 22 22222112223 55678899999999994 44444 23343
Q ss_pred hhhHHHHHHHHHHHHHH
Q 012181 159 RTIVKDFTAYADVCFRQ 175 (469)
Q Consensus 159 ~~~~~~f~~ya~~~~~~ 175 (469)
.++.+.|.+-.+.+.+.
T Consensus 214 gqt~e~~~~~l~~~~~l 230 (453)
T PRK09249 214 KQTPESFARTLEKVLEL 230 (453)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 13455666666666553
No 187
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=22.64 E-value=3.4e+02 Score=28.75 Aligned_cols=86 Identities=10% Similarity=0.158 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCCEEEecc-cc-cccccCCCCCCChhhHHHHHHHHHHHHHcCCcce-EeecCCCCchhHHhhhCCCCCh
Q 012181 83 KEDVKLMADTGLDAYRFSI-SW-SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWINR 159 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si-~W-~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~ggw~~~ 159 (469)
+|.+++|+++|++.+.+++ += .++...- |.-. ..+-..+.++.+++.|+..+ ++|. +++|.
T Consensus 141 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l-~R~~--~~~~~~~ai~~l~~~g~~~i~~dlI-~GlP~------------ 204 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGVQSFHDSELHAL-HRPQ--KRADVHQALEWIRAAGFPILNIDLI-YGIPG------------ 204 (430)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHh-CCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC------------
Confidence 7889999999999777777 33 2344332 2221 24567899999999999864 4442 34441
Q ss_pred hhHHHHHHHHHHHHHHhCCCceEEE
Q 012181 160 TIVKDFTAYADVCFRQFGDRVSYWT 184 (469)
Q Consensus 160 ~~~~~f~~ya~~~~~~~gd~v~~w~ 184 (469)
++.+.|.+=.+.+.+.=-+.+..+.
T Consensus 205 qt~e~~~~~l~~~~~l~~~~is~y~ 229 (430)
T PRK08208 205 QTHASWMESLDQALVYRPEELFLYP 229 (430)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEcc
Confidence 3455666655555542123444443
No 188
>PF01456 Mucin: Mucin-like glycoprotein; InterPro: IPR000458 This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated []. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells.
Probab=22.55 E-value=69 Score=28.19 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=17.5
Q ss_pred ChhhHHHHHHHHHHHHhhhhhccccc
Q 012181 1 MMLRLSFLLMYLLNLATSALTAVEYS 26 (469)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~~~ 26 (469)
||..|-++.+|+|+|-+|-+.|+..+
T Consensus 1 MmtcRLLCalLvlaLcCCpsvc~t~~ 26 (143)
T PF01456_consen 1 MMTCRLLCALLVLALCCCPSVCATAS 26 (143)
T ss_pred CchHHHHHHHHHHHHHcCcchhcccc
Confidence 77666666666677767777776543
No 189
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=21.92 E-value=3e+02 Score=30.63 Aligned_cols=93 Identities=11% Similarity=0.073 Sum_probs=54.6
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCc----hhHHhh-----
Q 012181 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP----QALEDE----- 152 (469)
Q Consensus 82 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P----~~l~~~----- 152 (469)
-++|++...+.|++.+|+..+-+.+ +-....++.++++|....+++..-+.| ..+.+.
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~ 164 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV-------------RNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELE 164 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 3567889999999999998765544 234556677777777766665332223 111110
Q ss_pred -----------hCCCCChhhHHHHHHHHHHHHHHhCCCceEEEEccCCcc
Q 012181 153 -----------YGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (469)
Q Consensus 153 -----------~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 191 (469)
--|-..| ....+.++.+-++++ ..-...+-|-..+
T Consensus 165 ~~Gad~I~i~Dt~G~~~P---~~~~~lv~~lk~~~~-~pi~~H~Hnt~Gl 210 (592)
T PRK09282 165 EMGCDSICIKDMAGLLTP---YAAYELVKALKEEVD-LPVQLHSHCTSGL 210 (592)
T ss_pred HcCCCEEEECCcCCCcCH---HHHHHHHHHHHHhCC-CeEEEEEcCCCCc
Confidence 0233443 445566666667775 2334567777665
No 190
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=21.86 E-value=3.3e+02 Score=29.88 Aligned_cols=107 Identities=12% Similarity=0.139 Sum_probs=66.9
Q ss_pred HHHHHHHHHcCCCEEEeccc--ccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChh
Q 012181 83 KEDVKLMADTGLDAYRFSIS--WSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRT 160 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~--W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~ 160 (469)
+|.+++|+++|++.+-+++. -.+++..-.-..+ .+-..+.++.+++.|++..+.|. +++|. +
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRght---~~~v~~Ai~~lr~~G~~v~~~LM-~GLPg------------q 269 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDILERTKRGHT---VRDVVEATRLLRDAGLKVVYHIM-PGLPG------------S 269 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHhCCCCC---HHHHHHHHHHHHHcCCeEEEEee-cCCCC------------C
Confidence 78899999999998877772 4444433211123 45567888899999998665553 34442 3
Q ss_pred hHHHHHHHHHHHHH--Hh-CCCceEEEEccCCccccccccccCCCCCC
Q 012181 161 IVKDFTAYADVCFR--QF-GDRVSYWTTVNEPNAFANLGYDYGIAPPQ 205 (469)
Q Consensus 161 ~~~~f~~ya~~~~~--~~-gd~v~~w~t~NEp~~~~~~gy~~g~~~Pg 205 (469)
+.+.+.+=++.+++ .+ -|.|+.+-+.=.|+.....-|..|.|.|.
T Consensus 270 t~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~ 317 (522)
T TIGR01211 270 SFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPY 317 (522)
T ss_pred CHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCC
Confidence 34556655566665 23 36777776665666544444556666554
No 191
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=21.49 E-value=2.3e+02 Score=32.07 Aligned_cols=53 Identities=21% Similarity=0.414 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHH
Q 012181 121 YYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFR 174 (469)
Q Consensus 121 ~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~ 174 (469)
....+++.++++|+..=+..+|-.++.-+..+||. +..-.++--.+|++.|-+
T Consensus 211 ~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~e~ 263 (733)
T PLN02925 211 VFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRK 263 (733)
T ss_pred HHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHHHH
Confidence 34459999999999999999999999999998875 434456666666666643
No 192
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=21.34 E-value=3.5e+02 Score=28.71 Aligned_cols=73 Identities=19% Similarity=0.326 Sum_probs=50.0
Q ss_pred cccChHHH-----HHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhh
Q 012181 78 GYHKYKED-----VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDE 152 (469)
Q Consensus 78 ~y~ry~eD-----i~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~ 152 (469)
.|++|.+| +++..+-|++.||.- -.-+ | .+-.+.-++..+++|-....++.--..|
T Consensus 91 GYrhyaDDvVe~Fv~ka~~nGidvfRiF-------DAlN---D---~RNl~~ai~a~kk~G~h~q~~i~YT~sP------ 151 (472)
T COG5016 91 GYRHYADDVVEKFVEKAAENGIDVFRIF-------DALN---D---VRNLKTAIKAAKKHGAHVQGTISYTTSP------ 151 (472)
T ss_pred cccCCchHHHHHHHHHHHhcCCcEEEec-------hhcc---c---hhHHHHHHHHHHhcCceeEEEEEeccCC------
Confidence 47777777 678899999999852 2221 2 4457888999999999988887532222
Q ss_pred hCCCCChhhHHHHHHHHHHHHHH
Q 012181 153 YGGWINRTIVKDFTAYADVCFRQ 175 (469)
Q Consensus 153 ~ggw~~~~~~~~f~~ya~~~~~~ 175 (469)
-.+++.|.++|+.+.+-
T Consensus 152 ------vHt~e~yv~~akel~~~ 168 (472)
T COG5016 152 ------VHTLEYYVELAKELLEM 168 (472)
T ss_pred ------cccHHHHHHHHHHHHHc
Confidence 13466677776666554
No 193
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=21.26 E-value=95 Score=19.24 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=12.2
Q ss_pred HHHHHHHHHHcCCcc
Q 012181 122 YNNLINELISYGIQP 136 (469)
Q Consensus 122 y~~~i~~l~~~gi~p 136 (469)
-.++++.+++.||+|
T Consensus 20 a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 20 ALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHhCCCC
Confidence 467888888899887
No 194
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=21.14 E-value=4.7e+02 Score=26.89 Aligned_cols=93 Identities=14% Similarity=0.243 Sum_probs=57.0
Q ss_pred HHHHHHHHHcCCCEEEecc-cc-cccccCCCCCCChhhHHHHHHHHHHHHHcCCcc-eEeecCCCCchhHHhhhCCCCCh
Q 012181 83 KEDVKLMADTGLDAYRFSI-SW-SRLIPNGRGPVNPKGLQYYNNLINELISYGIQP-HVTLHHFDLPQALEDEYGGWINR 159 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si-~W-~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p-~vtL~H~~~P~~l~~~~ggw~~~ 159 (469)
+|.+++|+++|++.+-+++ += .++...-....+ .+-+.+.++.++++|+.+ -++|. +++| -
T Consensus 103 ~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~---~~~~~~ai~~lr~~G~~~v~~dlI-~GlP------------g 166 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHT---IQDSKEAINLLHKNGIYNISCDFL-YCLP------------I 166 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCcEEEEEe-ecCC------------C
Confidence 7999999999999776666 33 234433212234 456788999999999974 34442 3444 1
Q ss_pred hhHHHHHHHHHHHHHHhCCCceEEEEccCCcc
Q 012181 160 TIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (469)
Q Consensus 160 ~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 191 (469)
++.+.|.+=.+.+.+-=-+.+..+...=||+.
T Consensus 167 qt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT 198 (353)
T PRK05904 167 LKLKDLDEVFNFILKHKINHISFYSLEIKEGS 198 (353)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeeEecCCC
Confidence 44666666666554432345555544445553
No 195
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=21.06 E-value=67 Score=26.76 Aligned_cols=14 Identities=21% Similarity=0.012 Sum_probs=5.7
Q ss_pred HHHHHHHhhhhhcc
Q 012181 10 MYLLNLATSALTAV 23 (469)
Q Consensus 10 ~~~l~~~~~~~~~~ 23 (469)
+|+|++++++++++
T Consensus 10 ~l~LA~lLlisSev 23 (95)
T PF07172_consen 10 GLLLAALLLISSEV 23 (95)
T ss_pred HHHHHHHHHHHhhh
Confidence 33333444444443
No 196
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.02 E-value=6.1e+02 Score=24.45 Aligned_cols=53 Identities=13% Similarity=0.128 Sum_probs=36.4
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceE
Q 012181 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHV 138 (469)
Q Consensus 82 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v 138 (469)
++|-++.++++|++.+=+++.=.+..+.. ..++. .....+-+.+.++||+...
T Consensus 18 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~-~~~~~---~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 18 WEERLVFAKELGFDFVEMSVDESDERLAR-LDWSK---EERLSLVKAIYETGVRIPS 70 (284)
T ss_pred HHHHHHHHHHcCCCeEEEecCCccccccc-ccCCH---HHHHHHHHHHHHcCCCceE
Confidence 48899999999999998875411111121 23443 3367788899999999764
No 197
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=20.87 E-value=1e+02 Score=29.13 Aligned_cols=47 Identities=17% Similarity=0.378 Sum_probs=31.9
Q ss_pred ccChhhHHHHHHHHHHHHHHHH-cCCCeEEEEeeeccccccccCC-----ccceee
Q 012181 367 LKDISRVKYLHAYIGSVLDAVR-NGSNIRGYFMWSFLDVFELMDG-----YESSYG 416 (469)
Q Consensus 367 ~~D~~Ri~yl~~hl~~v~~Ai~-dGv~V~GY~~WSl~Dn~EW~~G-----y~~rfG 416 (469)
+.++..-.-.+.-|+-+.++++ +|++.+|.++=.+|=+ .+| |..|||
T Consensus 138 ~~~~~~~~i~~~I~~pt~~~l~~eg~~y~GvLy~glMlt---~~Gp~vlEfN~RfG 190 (194)
T PF01071_consen 138 ITDELLEEIIEEILEPTLKGLKKEGIPYRGVLYAGLMLT---EDGPKVLEFNVRFG 190 (194)
T ss_dssp S-HHHHHHHHHHTHHHHHHHHHHTT---EEEEEEEEEEE---TTEEEEEEEESSGS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeEEe---CCCcEEEEEeCCCC
Confidence 3444454455557888888886 8999999999999987 345 777777
No 198
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=20.84 E-value=3.8e+02 Score=26.91 Aligned_cols=106 Identities=13% Similarity=0.145 Sum_probs=62.7
Q ss_pred HHHHHHHHH---cCCC-EEEeccc--ccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCC
Q 012181 83 KEDVKLMAD---TGLD-AYRFSIS--WSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGW 156 (469)
Q Consensus 83 ~eDi~l~~~---lG~~-~~R~si~--W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw 156 (469)
+|.+++|++ +|++ .+-++++ =.++...-.-..+ .+-+.+.++.++++||++.+++. +++| |
T Consensus 123 ~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~t---~~~~~~ai~~l~~~gi~v~~~lI-~GlP--------g- 189 (302)
T TIGR01212 123 DEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINRGHD---FACYVDAVKRARKRGIKVCSHVI-LGLP--------G- 189 (302)
T ss_pred HHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcCcCh---HHHHHHHHHHHHHcCCEEEEeEE-ECCC--------C-
Confidence 455666665 4884 4555552 2222222111123 45678899999999999776653 2333 1
Q ss_pred CChhhHHHHHHHHHHHHHHhCCCceEEEEccCCccccccccccCCCCC
Q 012181 157 INRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIAPP 204 (469)
Q Consensus 157 ~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~g~~~P 204 (469)
++.+.+.+=++.+.+.=-+.|+.....-+|+.....-|..|.+.|
T Consensus 190 ---et~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~~g~~~~ 234 (302)
T TIGR01212 190 ---EDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYEKGELKT 234 (302)
T ss_pred ---CCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHHcCCCCC
Confidence 345777777777666545678888777788765544455555543
No 199
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=20.75 E-value=1.7e+02 Score=31.24 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCCEEEeccc-cc-ccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEeec
Q 012181 83 KEDVKLMADTGLDAYRFSIS-WS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~-W~-ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 141 (469)
+|.+++|+++|++.+-++++ -+ ++...-.-..+ .+.+.+.++.++++||.+.+++.
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~---~~~~~~~i~~~~~~Gi~v~~~~I 344 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNIKKGLT---VEIARRFTRDCHKLGIKVHGTFI 344 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCC---HHHHHHHHHHHHHCCCeEEEEEE
Confidence 67799999999999888883 32 22222111234 55688999999999999887763
No 200
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=20.72 E-value=2.3e+02 Score=28.54 Aligned_cols=50 Identities=10% Similarity=0.116 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHcCCcceEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHHHhC
Q 012181 121 YYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFG 177 (469)
Q Consensus 121 ~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g 177 (469)
...+.|..|+++|+++++++--++.. ....++...+.|++....+++.|+
T Consensus 61 ~~~~~i~~~q~~G~KVllSiGG~~~~-------~~~~~~~~~~~fa~sl~~~~~~~g 110 (312)
T cd02871 61 EFKADIKALQAKGKKVLISIGGANGH-------VDLNHTAQEDNFVDSIVAIIKEYG 110 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEEeCCCCc-------cccCCHHHHHHHHHHHHHHHHHhC
Confidence 45778889999999999998433210 012345566777777777777775
No 201
>PRK08508 biotin synthase; Provisional
Probab=20.44 E-value=2e+02 Score=28.52 Aligned_cols=56 Identities=11% Similarity=0.063 Sum_probs=40.3
Q ss_pred hHHHHHHHHHcCCCEEEecccc-cccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee
Q 012181 82 YKEDVKLMADTGLDAYRFSISW-SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (469)
Q Consensus 82 y~eDi~l~~~lG~~~~R~si~W-~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 140 (469)
.+|.++.|+++|++++=.+++= +++.|.-...-+ ++...+.++.+++.||++--++
T Consensus 101 ~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~---~~~~l~~i~~a~~~Gi~v~sg~ 157 (279)
T PRK08508 101 SVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHT---WEERFQTCENAKEAGLGLCSGG 157 (279)
T ss_pred CHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCC---HHHHHHHHHHHHHcCCeeccee
Confidence 4899999999999999988732 446666422223 5556678888999999765443
No 202
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=20.38 E-value=3e+02 Score=21.76 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=32.2
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcceEee
Q 012181 86 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (469)
Q Consensus 86 i~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 140 (469)
-+.++.+|+.++|-| .+ ..+.+-.+++++.|+ .|....+|.
T Consensus 26 a~~~~~~G~~~iRGS-------s~------rgg~~Alr~~~~~lk-~G~~~~itp 66 (74)
T PF04028_consen 26 ARVLERFGFRTIRGS-------SS------RGGARALREMLRALK-EGYSIAITP 66 (74)
T ss_pred HHHHHHcCCCeEEeC-------CC------CcHHHHHHHHHHHHH-CCCeEEEeC
Confidence 367899999999999 22 224677899999999 888877775
No 203
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=20.38 E-value=2.7e+02 Score=26.88 Aligned_cols=62 Identities=16% Similarity=0.234 Sum_probs=37.8
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCC--CCCChhhHHHHHHHHHHHHHcCCcceEee-cCCCCc
Q 012181 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGR--GPVNPKGLQYYNNLINELISYGIQPHVTL-HHFDLP 146 (469)
Q Consensus 82 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~--g~~n~~~~~~y~~~i~~l~~~gi~p~vtL-~H~~~P 146 (469)
.++=+++++++|.+.+++..-+ . |.+. .+.-....+..+++.+.++++|+...+=. .|++.|
T Consensus 87 ~~~~i~~a~~lga~~i~~~~g~--~-~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~ 151 (258)
T PRK09997 87 VAAAIRYARALGNKKINCLVGK--T-PAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIP 151 (258)
T ss_pred HHHHHHHHHHhCCCEEEECCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCC
Confidence 5667899999999998864322 1 2210 11112234555777777889999877653 465444
No 204
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=20.25 E-value=3.6e+02 Score=28.75 Aligned_cols=77 Identities=14% Similarity=0.264 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCCCEEEeccc-cc-ccccCCCCCCChhhHHHHHHHHHHHHHcCCc-ceEeecCCCCchhHHhhhCCCCCh
Q 012181 83 KEDVKLMADTGLDAYRFSIS-WS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQ-PHVTLHHFDLPQALEDEYGGWINR 159 (469)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~-W~-ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~-p~vtL~H~~~P~~l~~~~ggw~~~ 159 (469)
+|.+++|+++|++.+-+++. =+ ++...-....+ .+...+.++.+++.|++ +-++| -+++| .
T Consensus 151 ~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~---~~~~~~ai~~l~~~G~~~v~~dl-i~GlP------------g 214 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQP---EEMIFELMNHAREAGFTSINIDL-IYGLP------------K 214 (455)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCC---HHHHHHHHHHHHhcCCCcEEEeE-EeeCC------------C
Confidence 78899999999997777662 22 23322212233 45678999999999997 33443 23333 2
Q ss_pred hhHHHHHHHHHHHHHH
Q 012181 160 TIVKDFTAYADVCFRQ 175 (469)
Q Consensus 160 ~~~~~f~~ya~~~~~~ 175 (469)
++.+.|.+-.+.+.+-
T Consensus 215 qt~e~~~~tl~~~~~l 230 (455)
T TIGR00538 215 QTKESFAKTLEKVAEL 230 (455)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 3466666666666553
No 205
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=20.16 E-value=6.4e+02 Score=24.46 Aligned_cols=54 Identities=17% Similarity=0.149 Sum_probs=38.1
Q ss_pred cChHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHcCCcce
Q 012181 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH 137 (469)
Q Consensus 80 ~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~ 137 (469)
.-+.|-+++++++|++.+=+++.-....|.. -.++ -.....+-+.++++||++.
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~-~~~~---~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVDETDDRLSR-LDWS---REQRLALVNAIIETGVRIP 69 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCccchhhc-cCCC---HHHHHHHHHHHHHcCCCce
Confidence 3468999999999999998876543322222 1233 2346778889999999875
Done!