BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012182
(469 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VAR|A Chain A, Crystal Structure Of Dnpep, Znzn Form
pdb|3VAT|A Chain A, Crystal Structure Of Dnpep, Znmg Form
Length = 496
Score = 348 bits (893), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 265/474 (55%), Gaps = 60/474 (12%)
Query: 50 GIAQXXXXXXIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFF 109
G A+ +LL ++N S +PFHA AE + L+ AGF L E + W++KP YF
Sbjct: 28 GRARKEAVQAAARELLKFVNRSPSPFHAVAECRSRLLQAGFHELKETESWDIKPESKYFL 87
Query: 110 TRNMSCLVAFAVGQKYSVG----------------------------------------- 128
TRN S ++AFAVG +Y G
Sbjct: 88 TRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRRSRRSQVGFQQVGVETYGGGIW 147
Query: 129 ------------RVIVR-GSDGSFLHKLVKVKRPLLRVPTLAIHLDRTVNKDGFKPNLET 175
RVIV+ + G +LV V RP+LR+P LAIHL R VN++ F PN+E
Sbjct: 148 STWFDRDLTLAGRVIVKCPTSGRLEQRLVHVDRPILRIPHLAIHLQRNVNEN-FGPNMEM 206
Query: 176 QLIPLLAXXXXXXXXX-XXXXXXXXXXXXXHHPQLMQILSQELGCGTDDIASIELNICDT 234
L+P+LA HH L +L LG +DI +EL + DT
Sbjct: 207 HLVPILATSIQEELEKGTPEPGPLNATDERHHSVLTSLLCAHLGLSPEDILEMELCLADT 266
Query: 235 QPSCLGGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGS 294
QP+ LGGA EFIF+ RLDNL S +C L+ALIDSC +P++L+++ +RM+AL+DNEEVGS
Sbjct: 267 QPAVLGGAYEEFIFAPRLDNLHSCFCALQALIDSCSAPASLAADPHVRMIALYDNEEVGS 326
Query: 295 DSYQGAGAPTMFQAIRRIVGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEE 354
+S QGA + +RRI S H T+FE I +S+++SADMAH VHPN+ +KHEE
Sbjct: 327 ESAQGAQSLLTELVLRRISASPQH----LTAFEEAIPKSYMISADMAHAVHPNYLDKHEE 382
Query: 355 HHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPIL 414
+HRP KG VIK N+ QRYA++ V+ L +E+A +P Q+ +VRND CG+TIGPIL
Sbjct: 383 NHRPLFHKGPVIKVNSKQRYASNAVSEALIREVASSVGVPLQDLMVRNDSPCGTTIGPIL 442
Query: 415 ASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFSSIDKKLIVD 468
AS +G+R +D G QL+MHS+RE T + FK F+E F S+ + L+VD
Sbjct: 443 ASRLGLRVLDLGSPQLAMHSIRETACTTGVLQTITLFKGFFELFPSLSRSLLVD 496
>pdb|4DYO|A Chain A, Crystal Structure Of Human Aspartyl Aminopeptidase (Dnpep)
In Complex With Aspartic Acid Hydroxamate
Length = 485
Score = 345 bits (885), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 195/480 (40%), Positives = 265/480 (55%), Gaps = 60/480 (12%)
Query: 41 RTLHNFSTSGIAQXXXXXXIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWE 100
R + +G A+ +LL ++N S +PFHA AE + L+ AGF L E ++W
Sbjct: 8 RGAMQVAMNGKARKEAVQTAAKELLKFVNRSPSPFHAVAECRNRLLQAGFSELKETEKWN 67
Query: 101 LKPGGGYFFTRNMSCLVAFAV------GQKYSV--------------------------- 127
+KP YF TRN S ++AFAV G +S+
Sbjct: 68 IKPESKYFMTRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRRSRRSQVGFQQVG 127
Query: 128 --------------------GRVIVR-GSDGSFLHKLVKVKRPLLRVPTLAIHLDRTVNK 166
GRVIV+ + G +LV V+RP+LR+P LAIHL R +N+
Sbjct: 128 VETYGGGIWSTWFDRDLTLAGRVIVKCPTSGRLEQQLVHVERPILRIPHLAIHLQRNINE 187
Query: 167 DGFKPNLETQLIPLLAXXXXXXXXXXXXXX-XXXXXXXXHHPQLMQILSQELGCGTDDIA 225
+ F PN E L+P+LA HH LM +L LG DI
Sbjct: 188 N-FGPNTEMHLVPILATAIQEELEKGTPEPGPLNAVDERHHSVLMSLLCAHLGLSPKDIV 246
Query: 226 SIELNICDTQPSCLGGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVA 285
+EL + DTQP+ LGGA +EFIF+ RLDNL S +C L+ALIDSC P +L++E +RMV
Sbjct: 247 EMELCLADTQPAVLGGAYDEFIFAPRLDNLHSCFCALQALIDSCAGPGSLATEPHVRMVT 306
Query: 286 LFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSETSFECTIRQSFLVSADMAHGVH 345
L+DNEEVGS+S QGA + +RRI S H T+FE I +SF++SADMAH VH
Sbjct: 307 LYDNEEVGSESAQGAQSLLTELVLRRISASCQHP----TAFEEAIPKSFMISADMAHAVH 362
Query: 346 PNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMG 405
PN+ +KHEE+HRP KG VIK N+ QRYA++ V+ L +E+A +P Q+ +VRND
Sbjct: 363 PNYLDKHEENHRPLFHKGPVIKVNSKQRYASNAVSEALIREVANKVKVPLQDLMVRNDTP 422
Query: 406 CGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFSSIDKKL 465
CG+TIGPILAS +G+R +D G QL+MHS+RE+ T + FK F+E F S+ + L
Sbjct: 423 CGTTIGPILASRLGLRVLDLGSPQLAMHSIREMACTTGVLQTLTLFKGFFELFPSLAENL 482
>pdb|2IJZ|A Chain A, Crystal Structure Of Aminopeptidase
pdb|2IJZ|B Chain B, Crystal Structure Of Aminopeptidase
pdb|2IJZ|C Chain C, Crystal Structure Of Aminopeptidase
pdb|2IJZ|D Chain D, Crystal Structure Of Aminopeptidase
pdb|2IJZ|E Chain E, Crystal Structure Of Aminopeptidase
pdb|2IJZ|F Chain F, Crystal Structure Of Aminopeptidase
pdb|2IJZ|G Chain G, Crystal Structure Of Aminopeptidase
pdb|2IJZ|H Chain H, Crystal Structure Of Aminopeptidase
pdb|2IJZ|I Chain I, Crystal Structure Of Aminopeptidase
pdb|2IJZ|J Chain J, Crystal Structure Of Aminopeptidase
pdb|2IJZ|K Chain K, Crystal Structure Of Aminopeptidase
pdb|2IJZ|L Chain L, Crystal Structure Of Aminopeptidase
Length = 428
Score = 212 bits (539), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 151/458 (32%), Positives = 220/458 (48%), Gaps = 105/458 (22%)
Query: 64 LLDYLNESWTPFHATAEAKRLL-------------------------------------- 85
L+D+L S TPFHATA R L
Sbjct: 8 LIDFLKASPTPFHATASLARRLEAAGYRRLDERDAWHTETGGRYYVTRNDSSLIAIRLGR 67
Query: 86 ---IDAGFELLNENDE---WELKP-----------------GGGYF---FTRNMSCLVAF 119
+++GF L+ + + +KP GG F F R++S
Sbjct: 68 RSPLESGFRLVGAHTDSPCLRVKPNPEIARNGFLQLGVEVYGGALFAPWFDRDLSL---- 123
Query: 120 AVGQKYSVGRVIVRGSDGSFLHKLVKVKRPLLRVPTLAIHLDRTVNKDGFKPNLETQLIP 179
GRV R ++G +LV ++ + +P L IHL+R N +G+ N + +L P
Sbjct: 124 -------AGRVTFR-ANGKLESRLVDFRKAIAVIPNLNIHLNRAAN-EGWPINAQNELPP 174
Query: 180 LLAXXXXXXXXXXXXXXXXXXXXXXHHPQLMQILSQELGCGTDDIASIELNICDTQPSCL 239
++A L + L +E G D + EL+ DTQ + +
Sbjct: 175 IIAQLAPGEAADFRLL-------------LDEQLLREHGITADVVLDYELSFYDTQSAAV 221
Query: 240 GGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQG 299
G N+EFI RLDNL S + GL AL+++ E+ I + D+EEVGS S+ G
Sbjct: 222 VGLNDEFIAGARLDNLLSCHAGLEALLNA------EGDENCILVCT--DHEEVGSCSHCG 273
Query: 300 AGAPTMFQAIRRIVGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPE 359
A P + Q +RR++ +F I++S LVSAD AHGVHPN++++H+ +H P
Sbjct: 274 ADGPFLEQVLRRLL-------PEGDAFSRAIQRSLLVSADNAHGVHPNYADRHDANHGPA 326
Query: 360 MQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVG 419
+ G VIK N+NQRYAT+ TA F+ + + +P Q FV R+DMGCGSTIGPI AS VG
Sbjct: 327 LNGGPVIKINSNQRYATNSETAGFFRHLCQDSEVPVQSFVTRSDMGCGSTIGPITASQVG 386
Query: 420 IRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYES 457
+RTVD G+ +MHS+RE+ G+ D+ + AFY S
Sbjct: 387 VRTVDIGLPTFAMHSIRELAGSHDLAHLVKVLGAFYAS 424
>pdb|4EME|A Chain A, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
pdb|4EME|B Chain B, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
pdb|4EME|C Chain C, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
pdb|4EME|D Chain D, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
Length = 571
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 143/283 (50%), Gaps = 30/283 (10%)
Query: 209 LMQILSQELGCGTDDIASIELNICDTQPSCLGGANNEFIFSGRLDNLASSYCGLRALIDS 268
L+ +LS+EL C +DI EL + DTQ C G EFI R DNL S+C I+
Sbjct: 281 LLYLLSKELNCKEEDILDFELCLMDTQEPCFTGVYEEFIEGARFDNLLGSFCVFEGFIEL 340
Query: 269 CVSPSN------------------LSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIR 310
S N + + + + +D+EE+GS S GA + I
Sbjct: 341 VNSIKNHTSNENTNHTNNITNDINDNIHNNLYISIGYDHEEIGSLSEVGARSYCTKNFID 400
Query: 311 RIVGSLAHEHVSETSFECT------IRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGL 364
RI+ S+ + + E + + +SF+++ DMAH HPN+ E +++H+ +G+
Sbjct: 401 RIISSVFKKEIHEKNLSVQEIYGNLVNRSFILNVDMAHCSHPNYPETVQDNHQLFFHEGI 460
Query: 365 VIKHNANQRYATSGVTAFLFKEIAKLH------NLPTQEFVVRNDMGCGSTIGPILASGV 418
IK+N N+ Y TS + A L K +L+ + Q F+V+ND CGST+G ++A+ +
Sbjct: 461 AIKYNTNKNYVTSPLHASLIKRTFELYYNKYKQQIKYQNFMVKNDTPCGSTVGSMVAANL 520
Query: 419 GIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFSSI 461
+ +D GI QL+MHS+REI D+ + AFY ++ +
Sbjct: 521 SMPGIDIGIPQLAMHSIREIAAVHDVFFLIKGVFAFYTYYNQV 563
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 54/174 (31%)
Query: 63 DLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVG 122
D L ++ S + F A K L + GF L+E + W L GY + + F VG
Sbjct: 12 DALKFIQRSGSNFLACKNLKERLENNGFINLSEGETWNLNKNEGYVLCKENRNICGFFVG 71
Query: 123 QKYSV--GRVIVR-------------------------------------------GSDG 137
+ +++ G +++ G G
Sbjct: 72 KNFNIDTGSILISIGHIDSCALKISPNNNVIKKKIHQINVECYGSGLWHTWFDRSLGLSG 131
Query: 138 SFLH--------KLVKVKRPLLRVPTLAIHL-DRTVNKDGFKPNLETQLIPLLA 182
L+ KL+++ + +L +P+LAIHL +RT K N E + P+++
Sbjct: 132 QVLYKKGNKLVEKLIQINKSVLFLPSLAIHLQNRTRYDFSVKINYENHIKPIIS 185
>pdb|2GLF|A Chain A, Crystal Structure Of Aminipeptidase (m18 Family) From
Thermotoga Maritima
pdb|2GLF|B Chain B, Crystal Structure Of Aminipeptidase (m18 Family) From
Thermotoga Maritima
pdb|2GLF|C Chain C, Crystal Structure Of Aminipeptidase (m18 Family) From
Thermotoga Maritima
pdb|2GLF|D Chain D, Crystal Structure Of Aminipeptidase (m18 Family) From
Thermotoga Maritima
Length = 450
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 115/257 (44%), Gaps = 16/257 (6%)
Query: 208 QLMQILSQELGCGTDDIASIELNICDTQPSCLGGANNEFIFSGRLDNLASSYCGLRALID 267
+++IL++ G +D S E+ + G + I + D+ +Y LRAL+
Sbjct: 204 NVLKILNEXYGITEEDFVSGEIEVVPAFSPREVGXDRSLIGAYGQDDRICAYTALRALLS 263
Query: 268 SCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSETSFE 327
+ + E +I ++ FD EE+GSD GA A +A+R+I+ + SE +
Sbjct: 264 A-------NPEKSIGVI-FFDKEEIGSDGNTGAKARFYLKALRQILKXQGAKD-SEFVLD 314
Query: 328 CTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKG--LVIKHNANQRYATSGVTAFLFK 385
+ + ++S D+ V+P + + H+ H+ P++ G LV A +Y+T+ A
Sbjct: 315 EVLENTSVISGDVCAAVNPPYKDVHDLHNAPKLGYGVALVKYTGARGKYSTNDAHAEFVA 374
Query: 386 EIAKLHNLPTQEFVV----RNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGT 441
+ K+ N + V + D G G TI A G +D G A L HS EI
Sbjct: 375 RVRKVLNEQGVIWQVATLGKVDQGGGGTIAKFFAE-RGSDVIDXGPALLGXHSPFEISSK 433
Query: 442 EDIDIAYRHFKAFYESF 458
D+ Y +++ E
Sbjct: 434 ADLFETYVAYRSLXEKL 450
>pdb|1Y7E|A Chain A, The Crystal Structure Of Aminopeptidase I From Borrelia
Burgdorferi B31
Length = 458
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 108/252 (42%), Gaps = 13/252 (5%)
Query: 210 MQILSQELGCGTDDIASIELNICDTQPSCLGGANNEFIFSGRLDNLASSYCGLRALIDSC 269
+Q++ ++ +D S E+ I + G + I + D+ + L ++ D
Sbjct: 212 LQLIKEKYKIEEEDFVSSEIEIVPAGTAKDVGFDKALIGAYGQDDKICVFTSLESIFDLE 271
Query: 270 VSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSETSFECT 329
+P+ + + L D EE+GS G + + + + + + +
Sbjct: 272 ETPNKTA------ICFLVDKEEIGSTGSTGLDSRYLEYFVSDXIFKIKKSEYNNLHVQKA 325
Query: 330 IRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQ--RYATSGVTAFLFKEI 387
+ S +SAD+ ++P FS H+E + P++ G+ I + S A L I
Sbjct: 326 LWNSKSISADVCAAINPLFSSVHDEQNAPQLGYGIPIXKYTGHGGKSMASDADAELVSYI 385
Query: 388 AKLHNLPTQEFVV----RNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTED 443
+L N + V + + G G T+ LA G GIRT+D G A +S HS EI D
Sbjct: 386 RQLLNKNNIAWQVATLGKVEEGGGGTVAKFLA-GYGIRTIDXGPAVISXHSPXEITSKFD 444
Query: 444 IDIAYRHFKAFY 455
+ AY +KAFY
Sbjct: 445 LYNAYLAYKAFY 456
>pdb|2GLJ|A Chain A, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|B Chain B, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|C Chain C, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|D Chain D, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|E Chain E, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|F Chain F, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|G Chain G, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|H Chain H, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|I Chain I, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|J Chain J, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|K Chain K, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|L Chain L, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|M Chain M, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|N Chain N, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|O Chain O, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|P Chain P, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|Q Chain Q, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|R Chain R, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|S Chain S, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|T Chain T, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|U Chain U, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|V Chain V, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|W Chain W, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|X Chain X, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
Length = 461
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 108/254 (42%), Gaps = 18/254 (7%)
Query: 208 QLMQILSQELGCGTDDIASIELNICDTQPSCLGGANNEFIFSGRLDNLASSYCGLRALID 267
+M+IL+++ +D S EL I + G + + D+ +Y A+++
Sbjct: 216 NIMKILNEKYDISEEDFVSAELEIVPAGKARDYGFDRSMVMGYGQDDRICAYTSFEAMLE 275
Query: 268 SCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSETSFE 327
+ + + L D EEVGS G + + I+ SL ++ E
Sbjct: 276 -------MKNAKKTCITILVDKEEVGSIGATGMQSKFFENTVADIM-SLCGDY-DELKLR 326
Query: 328 CTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEI 387
+ S ++S+D++ PN+ E+ + + KG+V R SG + I
Sbjct: 327 KALYNSEMLSSDVSAAFDPNYPNVMEKRNSAYLGKGIVFNKYTGSR-GKSGCNDANPEYI 385
Query: 388 AKLHNLPTQEFVV-------RNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICG 440
A+L + ++E V + D G G TI ILA G++ +DCG+A L+ H+ EI
Sbjct: 386 AELRRILSKESVNWQTAELGKVDQGGGGTIAYILAE-YGMQVIDCGVALLNXHAPWEISS 444
Query: 441 TEDIDIAYRHFKAF 454
DI + AF
Sbjct: 445 KADIYETKNGYSAF 458
>pdb|2WZN|A Chain A, 3d Structure Of Tet3 From Pyrococcus Horikoshii
Length = 354
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 60/153 (39%), Gaps = 12/153 (7%)
Query: 312 IVGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHR--PEMQKGLVIKHN 369
IVGS+ E S+ ++ ++ + F+++ + + PE+ KG V+
Sbjct: 209 IVGSVQEE----VGLRGARVASYAINPEVGIAMDVTFAKQPHDKGKIVPELGKGPVMDVG 264
Query: 370 ANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ 429
N + AF E+AK + +P Q G + + I GV T I
Sbjct: 265 PN---INPKLRAFA-DEVAKKYEIPLQVEPSPRPTGTDANVMQINKEGVA--TAVLSIPI 318
Query: 430 LSMHSVREICGTEDIDIAYRHFKAFYESFSSID 462
MHS E+ D+D + KA E +D
Sbjct: 319 RYMHSQVELADARDVDNTIKLAKALLEELKPMD 351
>pdb|2PE3|A Chain A, Crystal Structure Of Frv Operon Protein Frvx (Ph1821)from
Pyrococcus Horikoshii Ot3
pdb|2PE3|B Chain B, Crystal Structure Of Frv Operon Protein Frvx (Ph1821)from
Pyrococcus Horikoshii Ot3
pdb|2PE3|C Chain C, Crystal Structure Of Frv Operon Protein Frvx (Ph1821)from
Pyrococcus Horikoshii Ot3
pdb|2PE3|D Chain D, Crystal Structure Of Frv Operon Protein Frvx (Ph1821)from
Pyrococcus Horikoshii Ot3
Length = 354
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 60/153 (39%), Gaps = 12/153 (7%)
Query: 312 IVGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHR--PEMQKGLVIKHN 369
IVGS+ E S+ ++ ++ + F+++ + + PE+ KG V+
Sbjct: 209 IVGSVQEE----VGLRGARVASYAINPEVGIAMDVTFAKQPHDKGKIVPELGKGPVMDVG 264
Query: 370 ANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ 429
N + AF E+AK + +P Q G + + I GV T I
Sbjct: 265 PN---INPKLRAFA-DEVAKKYEIPLQVEPSPRPTGTDANVMQINREGVA--TAVLSIPI 318
Query: 430 LSMHSVREICGTEDIDIAYRHFKAFYESFSSID 462
MHS E+ D+D + KA E +D
Sbjct: 319 RYMHSQVELADARDVDNTIKLAKALLEELKPMD 351
>pdb|3F8L|A Chain A, Crystal Structure Of The Effector Domain Of Phnf From
Mycobacterium Smegmatis
pdb|3F8L|B Chain B, Crystal Structure Of The Effector Domain Of Phnf From
Mycobacterium Smegmatis
pdb|3F8L|C Chain C, Crystal Structure Of The Effector Domain Of Phnf From
Mycobacterium Smegmatis
pdb|3F8L|D Chain D, Crystal Structure Of The Effector Domain Of Phnf From
Mycobacterium Smegmatis
Length = 201
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 112 NMSCLVAFAVGQKYSVGRVIVRGSDGSFLHKLVKVKRPLLRVPTLAIHLDRTVNKDGFKP 171
M A Q S GR++V SD + L V + P L L+R + DG +
Sbjct: 38 GMGSYTEAAKAQGLSAGRILVAWSDLTADEVLAGVLGVDVGAPVL--QLERVLTTDGVRV 95
Query: 172 NLETQLIP 179
LET +P
Sbjct: 96 GLETTKLP 103
>pdb|1XFO|A Chain A, Crystal Structure Of An Archaeal Aminopeptidase
pdb|1XFO|B Chain B, Crystal Structure Of An Archaeal Aminopeptidase
pdb|1XFO|C Chain C, Crystal Structure Of An Archaeal Aminopeptidase
pdb|1XFO|D Chain D, Crystal Structure Of An Archaeal Aminopeptidase
Length = 357
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 384 FKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTED 443
+E+AK H +P Q ++ +G G+ G I + G+ T + +HS E+ D
Sbjct: 281 LEELAKKHEIPYQLEIL---LGGGTDAGAIHLTKAGVPTGALSVPARYIHSNTEVVDERD 337
Query: 444 ID 445
+D
Sbjct: 338 VD 339
>pdb|1Y0R|A Chain A, Crystal Structure Of The Tetrahedral Aminopeptidase From
P. Horikoshii
pdb|1Y0Y|A Chain A, Crystal Structure Of Tetrahedral Aminopeptidase From P.
Horikoshii In Complex With Amastatin
Length = 353
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 384 FKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTED 443
+E+AK H +P Q ++ +G G+ G I + G+ T + +HS E+ D
Sbjct: 277 LEELAKKHEIPYQLEIL---LGGGTDAGAIHLTKAGVPTGALSVPARYIHSNTEVVDERD 333
Query: 444 ID 445
+D
Sbjct: 334 VD 335
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,225,312
Number of Sequences: 62578
Number of extensions: 522598
Number of successful extensions: 1177
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1149
Number of HSP's gapped (non-prelim): 18
length of query: 469
length of database: 14,973,337
effective HSP length: 102
effective length of query: 367
effective length of database: 8,590,381
effective search space: 3152669827
effective search space used: 3152669827
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)