Query 012182
Match_columns 469
No_of_seqs 238 out of 1443
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 23:55:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012182.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012182hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2596 Aminopeptidase I zinc 100.0 2E-111 4E-116 844.3 32.5 412 52-468 9-479 (479)
2 PTZ00371 aspartyl aminopeptida 100.0 5E-104 1E-108 835.5 42.4 407 56-468 4-465 (465)
3 COG1362 LAP4 Aspartyl aminopep 100.0 8E-104 2E-108 802.4 33.5 374 60-457 8-435 (437)
4 PF02127 Peptidase_M18: Aminop 100.0 2E-102 5E-107 814.6 27.3 378 67-455 1-432 (432)
5 PRK02813 putative aminopeptida 100.0 1E-99 2E-104 796.3 42.2 371 57-457 4-427 (428)
6 PRK02256 putative aminopeptida 100.0 1.7E-99 4E-104 798.0 38.2 399 34-457 3-461 (462)
7 PRK09864 putative peptidase; P 100.0 7E-46 1.5E-50 380.6 28.0 235 151-460 108-343 (356)
8 COG1363 FrvX Cellulase M and r 100.0 3.5E-43 7.6E-48 358.4 27.5 240 147-461 107-349 (355)
9 TIGR03107 glu_aminopep glutamy 100.0 9.4E-43 2E-47 357.6 30.1 233 151-460 109-343 (350)
10 PRK09961 exoaminopeptidase; Pr 100.0 1.7E-41 3.7E-46 348.2 30.1 218 172-460 118-335 (344)
11 PF05343 Peptidase_M42: M42 gl 100.0 2.7E-41 5.8E-46 339.4 18.3 224 151-450 67-292 (292)
12 TIGR03106 trio_M42_hydro hydro 100.0 9.7E-38 2.1E-42 320.1 26.7 309 60-457 8-341 (343)
13 PF01546 Peptidase_M20: Peptid 98.5 1.8E-06 3.8E-11 79.9 12.4 159 244-457 26-189 (189)
14 TIGR01883 PepT-like peptidase 98.3 1.5E-05 3.2E-10 82.0 16.0 74 377-456 288-361 (361)
15 PRK00466 acetyl-lysine deacety 97.4 0.0026 5.7E-08 65.3 13.9 76 378-459 267-343 (346)
16 TIGR01893 aa-his-dipept aminoa 97.3 0.006 1.3E-07 65.7 15.1 78 376-458 397-476 (477)
17 PRK10199 alkaline phosphatase 97.0 0.00073 1.6E-08 70.0 5.0 47 249-300 139-185 (346)
18 PRK13381 peptidase T; Provisio 97.0 0.002 4.4E-08 67.6 7.8 78 376-459 326-403 (404)
19 PRK05469 peptidase T; Provisio 96.9 0.0025 5.4E-08 67.0 7.8 79 376-460 328-406 (408)
20 PRK08554 peptidase; Reviewed 96.7 0.0039 8.5E-08 66.6 7.5 77 376-458 360-436 (438)
21 PF04389 Peptidase_M28: Peptid 96.7 0.00066 1.4E-08 62.9 1.2 154 247-446 20-177 (179)
22 PRK12891 allantoate amidohydro 96.3 0.0097 2.1E-07 62.8 7.4 78 376-460 331-410 (414)
23 PRK07473 carboxypeptidase; Pro 96.2 0.0068 1.5E-07 63.3 5.7 74 379-458 301-375 (376)
24 PRK07338 hypothetical protein; 96.2 0.009 1.9E-07 62.5 6.6 78 377-460 321-399 (402)
25 PRK08652 acetylornithine deace 96.0 0.01 2.3E-07 60.4 5.9 78 376-459 267-345 (347)
26 TIGR01246 dapE_proteo succinyl 96.0 0.016 3.5E-07 59.9 7.0 76 377-458 294-370 (370)
27 TIGR01882 peptidase-T peptidas 95.9 0.012 2.6E-07 62.1 5.8 78 376-459 330-407 (410)
28 PRK06837 acetylornithine deace 95.7 0.021 4.5E-07 60.6 6.8 79 377-460 344-423 (427)
29 TIGR01902 dapE-lys-deAc N-acet 95.7 0.022 4.7E-07 58.2 6.5 79 376-459 255-334 (336)
30 PRK13983 diaminopimelate amino 95.5 0.034 7.4E-07 57.8 7.4 75 376-456 323-398 (400)
31 TIGR01880 Ac-peptdase-euk N-ac 95.5 0.035 7.7E-07 58.1 7.5 78 377-460 319-399 (400)
32 PRK12890 allantoate amidohydro 95.4 0.04 8.7E-07 58.0 7.5 78 375-459 332-411 (414)
33 PRK09290 allantoate amidohydro 95.4 0.042 9.1E-07 57.9 7.5 77 376-459 332-410 (413)
34 PRK04443 acetyl-lysine deacety 95.1 0.054 1.2E-06 55.7 7.0 77 377-458 271-348 (348)
35 COG2195 PepD Di- and tripeptid 95.0 0.1 2.2E-06 55.5 9.0 94 360-459 313-412 (414)
36 PRK08651 succinyl-diaminopimel 94.9 0.057 1.2E-06 56.2 6.8 76 378-459 314-391 (394)
37 PRK13009 succinyl-diaminopimel 94.8 0.073 1.6E-06 54.9 7.2 75 378-458 298-373 (375)
38 PRK06915 acetylornithine deace 94.5 0.087 1.9E-06 55.5 6.9 81 376-461 338-420 (422)
39 PRK13004 peptidase; Reviewed 94.1 0.058 1.3E-06 56.5 4.7 78 377-459 317-396 (399)
40 PRK08596 acetylornithine deace 94.1 0.13 2.7E-06 54.5 7.2 80 377-462 338-419 (421)
41 PRK08737 acetylornithine deace 94.1 0.11 2.3E-06 54.2 6.5 70 380-456 292-362 (364)
42 PRK15026 aminoacyl-histidine d 94.0 0.11 2.5E-06 56.3 6.7 80 375-459 402-483 (485)
43 PRK08588 succinyl-diaminopimel 93.9 0.14 3E-06 53.0 6.9 77 377-458 296-375 (377)
44 PRK09133 hypothetical protein; 93.7 0.13 2.9E-06 55.1 6.6 77 377-459 386-469 (472)
45 TIGR03176 AllC allantoate amid 93.4 0.19 4E-06 53.2 7.0 78 376-460 325-404 (406)
46 PRK07318 dipeptidase PepV; Rev 93.4 0.092 2E-06 56.4 4.7 75 377-458 388-464 (466)
47 PRK12893 allantoate amidohydro 93.3 0.18 3.9E-06 52.9 6.8 78 375-458 330-408 (412)
48 PRK12892 allantoate amidohydro 92.9 0.22 4.8E-06 52.2 6.5 76 376-458 332-409 (412)
49 TIGR01879 hydantase amidase, h 92.1 0.33 7.2E-06 51.0 6.7 77 375-457 323-400 (401)
50 TIGR01910 DapE-ArgE acetylorni 92.1 0.26 5.7E-06 51.0 5.8 68 376-449 305-374 (375)
51 PRK13799 unknown domain/N-carb 92.1 0.32 6.9E-06 54.2 6.8 78 377-460 511-590 (591)
52 TIGR03320 ygeY M20/DapE family 92.0 0.21 4.5E-06 52.3 5.0 77 377-458 315-393 (395)
53 PRK13013 succinyl-diaminopimel 92.0 0.41 8.8E-06 50.4 7.2 77 379-461 344-424 (427)
54 PRK07906 hypothetical protein; 91.9 0.43 9.4E-06 50.4 7.3 77 376-458 340-426 (426)
55 PRK06446 hypothetical protein; 91.7 0.32 7E-06 51.7 6.1 54 406-459 377-434 (436)
56 PRK07079 hypothetical protein; 91.0 0.55 1.2E-05 50.4 7.1 79 378-460 375-456 (469)
57 TIGR03526 selenium_YgeY putati 91.0 0.39 8.5E-06 50.2 5.8 76 377-458 315-393 (395)
58 PRK07522 acetylornithine deace 90.5 0.5 1.1E-05 48.9 6.0 52 406-458 331-383 (385)
59 PRK09104 hypothetical protein; 90.0 0.7 1.5E-05 49.5 6.8 77 377-459 381-462 (464)
60 PRK05111 acetylornithine deace 89.7 0.67 1.4E-05 48.0 6.1 51 407-458 329-380 (383)
61 PRK13590 putative bifunctional 89.2 0.7 1.5E-05 51.5 6.2 79 376-460 508-588 (591)
62 COG0624 ArgE Acetylornithine d 89.0 1.1 2.4E-05 46.9 7.3 78 376-459 328-407 (409)
63 PRK15026 aminoacyl-histidine d 88.7 0.73 1.6E-05 50.1 5.8 49 244-299 102-154 (485)
64 PRK06133 glutamate carboxypept 88.2 0.81 1.8E-05 48.3 5.6 76 379-458 329-406 (410)
65 PRK08201 hypothetical protein; 87.2 1.7 3.7E-05 46.4 7.4 75 378-459 374-454 (456)
66 PRK13007 succinyl-diaminopimel 87.0 1 2.3E-05 45.9 5.4 49 406-455 302-351 (352)
67 TIGR01886 dipeptidase dipeptid 86.2 1.2 2.5E-05 48.1 5.5 75 377-458 388-464 (466)
68 TIGR01892 AcOrn-deacetyl acety 85.3 0.88 1.9E-05 46.6 3.9 48 406-454 315-363 (364)
69 COG2234 Iap Predicted aminopep 85.2 1.3 2.9E-05 46.8 5.3 53 249-306 224-276 (435)
70 PRK08651 succinyl-diaminopimel 85.0 0.92 2E-05 47.2 3.9 48 245-298 105-153 (394)
71 TIGR01892 AcOrn-deacetyl acety 83.5 1.4 3.1E-05 45.0 4.5 49 245-298 89-138 (364)
72 PRK07205 hypothetical protein; 83.5 2.4 5.2E-05 45.2 6.3 40 420-459 399-442 (444)
73 PRK07907 hypothetical protein; 83.1 3.6 7.9E-05 43.9 7.5 78 377-459 365-447 (449)
74 PRK06156 hypothetical protein; 82.7 2.8 6.1E-05 45.9 6.6 72 379-460 440-516 (520)
75 TIGR01910 DapE-ArgE acetylorni 81.9 1.7 3.6E-05 45.1 4.3 51 245-298 96-147 (375)
76 PRK08652 acetylornithine deace 81.6 1.7 3.6E-05 44.2 4.2 42 251-297 85-126 (347)
77 PRK13381 peptidase T; Provisio 81.4 1.9 4.2E-05 45.2 4.7 51 244-298 124-179 (404)
78 PRK07522 acetylornithine deace 81.2 1.8 3.9E-05 44.8 4.3 46 248-298 99-144 (385)
79 KOG2195 Transferrin receptor a 80.4 7.1 0.00015 44.5 8.8 152 237-438 354-514 (702)
80 PRK07473 carboxypeptidase; Pro 79.8 2 4.4E-05 44.8 4.1 50 246-298 104-154 (376)
81 PRK08262 hypothetical protein; 79.6 2.5 5.5E-05 45.5 4.9 78 377-459 400-484 (486)
82 PRK08588 succinyl-diaminopimel 79.1 2.2 4.8E-05 44.1 4.1 51 245-298 91-142 (377)
83 PRK06915 acetylornithine deace 77.7 3 6.6E-05 43.9 4.7 51 245-298 125-176 (422)
84 TIGR01882 peptidase-T peptidas 77.6 3.3 7.2E-05 43.7 5.0 44 245-293 136-179 (410)
85 PRK08596 acetylornithine deace 77.5 2.8 6.2E-05 44.3 4.4 51 245-298 109-160 (421)
86 PRK07205 hypothetical protein; 77.2 3.2 7E-05 44.2 4.8 50 245-297 107-157 (444)
87 PRK07318 dipeptidase PepV; Rev 77.1 2.7 5.8E-05 45.2 4.2 50 246-298 110-160 (466)
88 TIGR01902 dapE-lys-deAc N-acet 77.0 2.9 6.4E-05 42.5 4.2 47 246-299 74-121 (336)
89 PRK06133 glutamate carboxypept 76.5 3.2 7E-05 43.8 4.5 50 246-298 128-178 (410)
90 PRK13983 diaminopimelate amino 75.9 3.1 6.7E-05 43.1 4.1 48 245-295 108-156 (400)
91 TIGR01880 Ac-peptdase-euk N-ac 74.5 3.6 7.9E-05 42.9 4.3 50 246-298 104-155 (400)
92 PRK07338 hypothetical protein; 73.7 5.8 0.00012 41.4 5.5 53 243-298 118-171 (402)
93 PRK09133 hypothetical protein; 73.4 4 8.7E-05 43.8 4.4 51 245-298 132-184 (472)
94 PRK05111 acetylornithine deace 73.1 4.2 9.2E-05 42.0 4.3 48 246-298 103-151 (383)
95 PRK13007 succinyl-diaminopimel 71.0 7.9 0.00017 39.5 5.7 44 244-294 85-129 (352)
96 PRK06446 hypothetical protein; 70.6 4.6 0.0001 42.9 4.0 47 247-297 97-143 (436)
97 TIGR03176 AllC allantoate amid 69.4 5.3 0.00011 42.3 4.1 59 247-308 82-145 (406)
98 PRK09104 hypothetical protein; 69.3 5.5 0.00012 42.7 4.2 49 247-298 121-170 (464)
99 PRK08262 hypothetical protein; 68.7 5.9 0.00013 42.7 4.3 50 246-298 146-196 (486)
100 PRK06156 hypothetical protein; 68.4 5.9 0.00013 43.3 4.3 50 246-298 146-196 (520)
101 TIGR01879 hydantase amidase, h 66.9 6.4 0.00014 41.3 4.1 52 250-304 83-139 (401)
102 TIGR01246 dapE_proteo succinyl 66.6 7.6 0.00017 40.0 4.5 51 245-298 87-139 (370)
103 PRK08201 hypothetical protein; 66.4 6.2 0.00014 42.1 3.9 50 245-297 111-161 (456)
104 PRK05469 peptidase T; Provisio 65.8 8.6 0.00019 40.4 4.8 43 252-298 139-181 (408)
105 PRK13013 succinyl-diaminopimel 65.2 8.3 0.00018 40.6 4.5 49 245-296 114-163 (427)
106 COG4187 RocB Arginine degradat 64.8 22 0.00047 38.5 7.3 79 208-303 107-186 (553)
107 PF05382 Amidase_5: Bacterioph 64.6 8.2 0.00018 35.4 3.8 37 77-113 52-88 (145)
108 PRK13590 putative bifunctional 64.4 8.3 0.00018 43.0 4.5 44 246-292 263-306 (591)
109 PRK04443 acetyl-lysine deacety 64.1 9 0.0002 39.3 4.5 46 246-297 83-129 (348)
110 PRK13799 unknown domain/N-carb 63.4 8.7 0.00019 42.9 4.5 59 246-307 263-326 (591)
111 PRK08554 peptidase; Reviewed 63.1 9.6 0.00021 40.8 4.6 46 246-296 95-141 (438)
112 PRK13009 succinyl-diaminopimel 61.7 11 0.00023 38.8 4.5 47 245-294 90-137 (375)
113 PLN02280 IAA-amino acid hydrol 61.5 19 0.00042 39.1 6.6 78 376-458 387-473 (478)
114 PRK07907 hypothetical protein; 60.8 12 0.00025 40.0 4.7 46 246-297 116-162 (449)
115 TIGR01886 dipeptidase dipeptid 59.3 11 0.00023 40.7 4.1 50 246-298 109-159 (466)
116 TIGR01900 dapE-gram_pos succin 58.9 15 0.00032 38.2 5.0 49 245-294 94-143 (373)
117 TIGR01887 dipeptidaselike dipe 58.8 10 0.00022 40.7 3.9 46 250-298 103-148 (447)
118 PRK07906 hypothetical protein; 57.2 12 0.00026 39.5 4.0 43 250-295 102-144 (426)
119 COG3655 Predicted transcriptio 56.3 10 0.00023 30.8 2.6 25 206-230 44-68 (73)
120 PRK06837 acetylornithine deace 55.3 15 0.00032 39.0 4.3 49 245-296 129-178 (427)
121 PRK07079 hypothetical protein; 55.0 12 0.00026 40.1 3.7 51 246-298 119-170 (469)
122 cd05565 PTS_IIB_lactose PTS_II 54.6 42 0.00091 28.7 6.2 51 375-433 11-61 (99)
123 PRK09290 allantoate amidohydro 54.1 15 0.00033 38.6 4.2 40 252-294 91-130 (413)
124 TIGR01887 dipeptidaselike dipe 50.8 26 0.00056 37.7 5.3 69 377-455 374-447 (447)
125 PRK12890 allantoate amidohydro 49.9 19 0.0004 37.9 4.0 41 251-294 91-131 (414)
126 PRK12892 allantoate amidohydro 48.2 19 0.00041 37.7 3.8 39 252-293 92-130 (412)
127 PRK12893 allantoate amidohydro 46.5 21 0.00046 37.4 3.8 39 252-293 94-132 (412)
128 TIGR00715 precor6x_red precorr 45.8 34 0.00074 34.2 5.0 66 382-453 187-253 (256)
129 PRK08737 acetylornithine deace 43.9 27 0.00059 36.3 4.1 39 246-294 94-133 (364)
130 PF07167 PhaC_N: Poly-beta-hyd 37.1 33 0.00072 32.4 3.1 79 71-156 61-153 (172)
131 KOG2194 Aminopeptidases of the 33.9 41 0.00088 39.1 3.7 51 249-302 159-209 (834)
132 PRK13004 peptidase; Reviewed 33.1 64 0.0014 33.7 4.9 46 245-293 101-147 (399)
133 PRK12891 allantoate amidohydro 32.6 46 0.001 35.1 3.7 39 252-293 94-132 (414)
134 PLN02693 IAA-amino acid hydrol 32.6 98 0.0021 33.2 6.3 79 375-458 334-420 (437)
135 KOG2275 Aminoacylase ACY1 and 32.3 48 0.001 35.5 3.7 53 247-302 123-176 (420)
136 TIGR01900 dapE-gram_pos succin 31.4 60 0.0013 33.7 4.3 33 406-439 339-372 (373)
137 PRK13365 protocatechuate 4,5-d 31.1 3.3E+02 0.0072 27.5 9.4 121 328-459 45-178 (279)
138 PF09083 DUF1923: Domain of un 30.3 1.5E+02 0.0032 22.9 5.0 31 107-141 14-48 (64)
139 PF08854 DUF1824: Domain of un 30.1 1E+02 0.0022 27.7 4.8 73 58-144 22-103 (125)
140 PRK10602 murein peptide amidas 28.3 3.8E+02 0.0082 26.6 9.1 71 377-459 165-235 (237)
141 PRK03537 molybdate ABC transpo 28.3 74 0.0016 29.8 4.0 27 58-92 158-184 (188)
142 COG0624 ArgE Acetylornithine d 28.0 62 0.0013 33.8 3.7 46 250-298 113-158 (409)
143 COG2099 CobK Precorrin-6x redu 26.8 1.7E+02 0.0036 29.5 6.2 63 385-452 189-252 (257)
144 TIGR02298 HpaD_Fe 3,4-dihydrox 26.5 3.4E+02 0.0073 27.4 8.6 78 374-458 92-171 (282)
145 COG0496 SurE Predicted acid ph 24.6 67 0.0015 32.2 3.0 50 407-460 104-154 (252)
146 TIGR01891 amidohydrolases amid 23.5 80 0.0017 32.4 3.5 32 61-92 5-36 (363)
147 COG2195 PepD Di- and tripeptid 21.1 72 0.0016 34.3 2.6 45 252-298 143-187 (414)
148 COG2257 Uncharacterized homolo 20.8 85 0.0019 26.6 2.4 21 378-398 31-51 (92)
149 cd07371 2A5CPDO_AB The alpha a 20.7 5.8E+02 0.013 25.4 8.9 78 374-458 83-162 (268)
150 cd07950 Gallate_Doxase_N The N 20.5 4.3E+02 0.0093 26.7 8.0 121 328-459 45-178 (277)
No 1
>KOG2596 consensus Aminopeptidase I zinc metalloprotease (M18) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-111 Score=844.26 Aligned_cols=412 Identities=58% Similarity=0.933 Sum_probs=383.4
Q ss_pred ccccchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHCCCcccccCCcccccCCCeEEEEeCCcEEEEEEeCCcCcc----
Q 012182 52 AQSSSSSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSV---- 127 (469)
Q Consensus 52 ~~~~~~~~~a~~~~~FL~~spT~~hav~~~~~~L~~~GF~~L~e~~~W~l~~g~kyf~~r~~s~iiAf~vG~~~~~---- 127 (469)
+.++...++|++|++||++||||||||++++++|.++||++|.|++.|+++||+|||+|||+++|+||.||++|.|
T Consensus 9 ~~k~~~~s~a~efl~fln~spTpfHav~e~k~~Ll~agF~~LsE~~~W~iepg~kyf~tRN~S~iiAFavG~ky~pgnGf 88 (479)
T KOG2596|consen 9 PSKECKSSAAQEFLDFLNKSPTPFHAVQEFKERLLKAGFKELSEKSDWQIEPGGKYFVTRNGSSIIAFAVGGKYVPGNGF 88 (479)
T ss_pred CCchhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHccchhcccccCcccCCCceEEEEccCceEEEEeccCcccCCCce
Confidence 3344456689999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred -------------------------------------------------cEEEEEc-CCCcEEEEEeeeCCCeEeecccc
Q 012182 128 -------------------------------------------------GRVIVRG-SDGSFLHKLVKVKRPLLRVPTLA 157 (469)
Q Consensus 128 -------------------------------------------------GrV~~k~-~~g~~~~~lv~~~~Pv~~Ip~La 157 (469)
|||++|+ ++|+++++||++++||++||+||
T Consensus 89 ~iigaHtDSpcLrlKP~Sk~s~~gylqVgV~tYGGgiw~tWfDRDLsvaGRvivk~~~~~~~~~~LV~v~rPllrIPtLA 168 (479)
T KOG2596|consen 89 SIIGAHTDSPCLRLKPVSKRSAEGYLQVGVETYGGGIWHTWFDRDLSVAGRVIVKEAGDGKLIHRLVDVKRPLLRIPTLA 168 (479)
T ss_pred eEEEecCCCcceeecccccccccceEEEEEeecCCccchhhccccccccceEEEEecCCcceeeeeecCCCceeecccee
Confidence 9999996 47899999999999999999999
Q ss_pred cccccccccCCCCCCccccccceeeccCccccC---CccccCC--CCCCccCChhHHHHHHHHHhCCCCCceeEEEEEee
Q 012182 158 IHLDRTVNKDGFKPNLETQLIPLLATKSEETSV---EPKEKSS--TSSSKVTHHPQLMQILSQELGCGTDDIASIELNIC 232 (469)
Q Consensus 158 iHL~~~~~~~~~~~n~~~~l~piig~~~~~~~~---~~~~~~~--~~~~~~~h~~~ll~~la~~~gV~~gDiv~~dl~l~ 232 (469)
|||+|+.| ++|++|.|++|.||+|....++++ ++.++++ ..+.+++|++.||.+||+++|++++|||++||+++
T Consensus 169 iHldr~~n-~~f~pn~EtqlvPil~t~~~~~~~~~e~~~~~~~~~~~~~~~~Hhp~Ll~liak~lg~~~edIvd~eL~l~ 247 (479)
T KOG2596|consen 169 IHLDRDVN-EGFKPNTETQLVPILGTAIPAEEEKTEKPSDDGDKPRNSSKGKHHPVLLGLIAKELGCTPEDIVDFELILY 247 (479)
T ss_pred eecCCccc-ccCCCCccceeeeeecccCchhhhcCCCCCCCCccccccccccccHHHHHHHHHHhCCCHHHhhheeeeee
Confidence 99999999 889999999999999987653221 1111222 25667899999999999999999999999999999
Q ss_pred ecCCccccCCCCceeeeccccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccccCCcchHHHHHHH
Q 012182 233 DTQPSCLGGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRI 312 (469)
Q Consensus 233 d~~~~~~~Gl~~e~I~~~~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~gA~s~~~~dil~ri 312 (469)
|+||++++|+++|||+++|||||.|||+++.||+.+... .++++.+.+.++++||||||||.++|||.|.|++++|+||
T Consensus 248 Dtq~a~lgG~~~eFiFs~RLDnl~~sF~al~aLi~s~~~-~~l~~e~~ir~valfDnEEvGS~SaQGA~s~~l~~vl~Ri 326 (479)
T KOG2596|consen 248 DTQKATLGGANDEFIFSPRLDNLLSSFCALQALIDSAEG-ESLENESGIRMVALFDNEEVGSDSAQGAGSPFLESVLRRI 326 (479)
T ss_pred cCCchhhcCcccceeecccccchhhHHHHHHHHHHHhcC-CCcccCCCeEEEEeccchhhcchhhccCCCccHHHHHHHH
Confidence 999999999999999999999999999999999988654 3566677889999999999999999999999999999999
Q ss_pred HhcccccCCchhhhhhhccCceEEEEecCCCCCCCCCccccCCCCCcCCCCceEEEcCCCCcccCHHHHHHHHHHHHHCC
Q 012182 313 VGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHN 392 (469)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~s~~IS~DvahA~~Pn~~~~~~~~~~~~LG~GpvIk~~~~~~y~t~~~~~~~l~~ia~~~~ 392 (469)
..+++. .+..|.+++++||+||+||+||+||||+++|+.+|+|.|++|||||+|+||||+||....+.++++|++++
T Consensus 327 ss~~~~---~~~~~~~ai~kSflvSADmaHa~hPNy~~kheenH~P~~h~G~vik~naNqryaTn~v~~~l~kevA~~~~ 403 (479)
T KOG2596|consen 327 SSLFGS---FPTAFEEAIAKSFLVSADMAHAVHPNYSDKHEENHRPLLHGGPVIKVNANQRYATNSVGSALVKEVAELAK 403 (479)
T ss_pred HHhcCC---CchHHHHHhhhheeeehhhhhhcCCCchhhhhhccCCccCCCceEEEcCCcceeccchhHHHHHHHHHHcC
Confidence 998864 57789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhhccccchhhhcCHHHHHHHHHHHHHHHhhccccccccccc
Q 012182 393 LPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFSSIDKKLIVD 468 (469)
Q Consensus 393 Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll~af~~~~~~~~~~~~~~ 468 (469)
+|+|.|++|||++||||||||+++++||+|+|+|+|+|+|||+||||+.+|++.+++++++||++|..++.++.+|
T Consensus 404 vplQ~fvVrNdspcGsTIGPiLAS~~G~RTlDlG~pqLsMHSiRe~~gs~dv~~~~~lFk~Ff~~f~sv~~~~~vd 479 (479)
T KOG2596|consen 404 VPLQDFVVRNDSPCGSTIGPILASKTGIRTLDLGIPQLSMHSIREMCGSKDVEQAVKLFKGFFERFSSVESKLVVD 479 (479)
T ss_pred CCceeEEEecCCCCccccchhhhhhcCceeeecCchhhhhHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHhhccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998876
No 2
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=100.00 E-value=5.3e-104 Score=835.48 Aligned_cols=407 Identities=48% Similarity=0.845 Sum_probs=367.0
Q ss_pred chHHHHHHHHHHHhcCCChHHHHHHHHHHHHHCCCcccccCCcccccCCCeEEEEeCCcEEEEEEeCCcCc-c-------
Q 012182 56 SSSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYS-V------- 127 (469)
Q Consensus 56 ~~~~~a~~~~~FL~~spT~~hav~~~~~~L~~~GF~~L~e~~~W~l~~g~kyf~~r~~s~iiAf~vG~~~~-~------- 127 (469)
.+++++++|++||++||||||||++++++|+++||++|+|++.|+++||+|||++||+++|+||++|+++. +
T Consensus 4 ~~~~~~~~~~~Fl~~s~t~~hav~~~~~~L~~~GF~~l~e~~~w~l~~g~kyyv~r~~ssl~Af~vg~~~~~~~~g~~iv 83 (465)
T PTZ00371 4 KARELAQEFLNFINKTGSPFHAVQELKERLKKSGFKQLNEGENWKLEKGGKYYLTRNNSTIVAFTVGKKFDAPNGGFKIV 83 (465)
T ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCcCEEccccccCccCCCCEEEEEcCCcEEEEEEeCCCCccCCCCeEEE
Confidence 35668999999999999999999999999999999999999999999999999999999999999998852 1
Q ss_pred ----------------------------------------------cEEEEEcCCCcEEEEEeeeCCCeEeecccccccc
Q 012182 128 ----------------------------------------------GRVIVRGSDGSFLHKLVKVKRPLLRVPTLAIHLD 161 (469)
Q Consensus 128 ----------------------------------------------GrV~~k~~~g~~~~~lv~~~~Pv~~Ip~LaiHL~ 161 (469)
|||++|+ +|+++++||+.++||++||+|||||+
T Consensus 84 gaHtDsP~lklKp~~~~~~~g~~~l~ve~YGG~l~~tW~dR~L~laGrV~~~~-~g~~~~~lv~~~~pv~~IP~LaiHl~ 162 (465)
T PTZ00371 84 GAHTDSPCLRLKPNSKVTKEGFQQVGVETYGGGLWHTWFDRDLGLAGRVVYKK-DGKLEEKLIRINKPILRIPNLAIHLQ 162 (465)
T ss_pred EEeccCCCccccCCCcccCCCEEEEeeEECCChhhccccCCCceeeeEEEEee-CCeEEEEEEeCCCCeEECCchhhhcC
Confidence 9999997 58999999999999999999999999
Q ss_pred cccccCCCCCCccccccceeeccCccccCCccccCCCCCCccCChhHHHHHHHHHhCCCCCceeEEEEEeeecCCccccC
Q 012182 162 RTVNKDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGG 241 (469)
Q Consensus 162 ~~~~~~~~~~n~~~~l~piig~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV~~gDiv~~dl~l~d~~~~~~~G 241 (469)
|++|++++++|+|+||+||+|..+.++.. +++++.+.+++|+..|+++|++++||++||+++|||++||.++++++|
T Consensus 163 r~~n~~~~~~n~~~~l~pi~~~~~~~~~~---~~~~~~~~~~~~~~~ll~~la~~~gv~~~Div~~dL~l~d~~~~~~~G 239 (465)
T PTZ00371 163 TSTERESFKPNKENHLKPIISTEVYEQLN---GKQDNDNSNNNHSAPLLKLIAKELGCSVEDIVDFDLCLMDTQPSCFGG 239 (465)
T ss_pred ccccccCCCcCccCcceeEEecCcccccc---cccccccccccchHHHHHHHHHHcCCCCCceEEEEEEeecCCcceEee
Confidence 99885689999999999999876532110 001111224578899999999999999999999999999999999999
Q ss_pred CCCceeeeccccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccccCCcchHHHHHHHHhcccccCC
Q 012182 242 ANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHV 321 (469)
Q Consensus 242 l~~e~I~~~~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~gA~s~~~~dil~ri~~~~~~~~~ 321 (469)
++++||.|+|||||+|||++++||+++.....+ ....+.++++||||||||+|++||++.|+||+|+||..+++....
T Consensus 240 ~~~e~i~s~rlDnr~~~~~~l~al~~~~~~~~~--~~~~~~v~~~~d~EEVGs~ga~GA~s~~l~d~l~ri~~~~~~~~~ 317 (465)
T PTZ00371 240 LNEEFISSPRLDNLGSSFCAFKALTEAVESLGE--NSSNIRMVCLFDHEEVGSSSSQGAGSSLLPDTIERILSSLSASNN 317 (465)
T ss_pred cCCCeEEEecchhHHHHHHHHHHHHhccccccC--CCCceEEEEEECCcCCCCCcchhccccccHHHHHHHHHhhccccc
Confidence 999999999999999999999999987531000 023456677799999999999999999999999999998875110
Q ss_pred -chhhhhhhccCceEEEEecCCCCCCCCCccccCCCCCcCCCCceEEEcCCCCcccCHHHHHHHHHHHHHCCCCEeEEEe
Q 012182 322 -SETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVV 400 (469)
Q Consensus 322 -~~~~~~~~~~~s~~IS~DvahA~~Pn~~~~~~~~~~~~LG~GpvIk~~~~~~y~t~~~~~~~l~~ia~~~~Ip~Q~~v~ 400 (469)
+++.+.+++++|++||+||+||+||||+++|+++|.+.||+||+||++++++|+||+.+.++++++|+++|||||.++.
T Consensus 318 ~~~~~~~~~~~~S~~IS~DvahA~hPn~~~~~d~~~~~~lg~GpvIk~~a~~~y~td~~~~a~i~~la~~~~Ip~Q~~~~ 397 (465)
T PTZ00371 318 SSDDSFAKLMARSFLLSVDMAHAVHPNYPEKHQANHRPKFHEGIVIKYNANQRYATNGVTASLLKAIAKKANIPIQEFVV 397 (465)
T ss_pred cchhHHHHHHhccEEEEEecccccCCCCccccCCcCceeCCCCcEEEEeCCCCcccCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 2678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCChHHHHhcCCCCcEEEechhhccccchhhhcCHHHHHHHHHHHHHHHhhccccccccccc
Q 012182 401 RNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFSSIDKKLIVD 468 (469)
Q Consensus 401 r~D~~gGgTig~i~~s~~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll~af~~~~~~~~~~~~~~ 468 (469)
|+|++||||+|+|++++.||||+|||+|+|||||+|||++++|++++++++++||+.+..++.++.++
T Consensus 398 ~~d~~~GsTig~i~~s~~Gi~tvDiGiP~l~MHS~rE~~~~~D~~~~~~l~~af~~~~~~~~~~~~~~ 465 (465)
T PTZ00371 398 KNDSPCGSTIGPILSSNLGIRTVDIGIPQLAMHSIREMCGVVDIYYLVKLIKAFFTNYSKVDGSSLLD 465 (465)
T ss_pred cCCCCCcchHHHHHHhCCCCcEEEechhhcccccHHHHccHHHHHHHHHHHHHHHHhhhhhcceEeeC
Confidence 99999999999999999999999999999999999999999999999999999999999988877654
No 3
>COG1362 LAP4 Aspartyl aminopeptidase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.3e-104 Score=802.44 Aligned_cols=374 Identities=44% Similarity=0.742 Sum_probs=354.2
Q ss_pred HHHH-HHHHHhcCCChHHHHHHHHHHHHHCCCcccccCCcccccCCCeEEEEeCCcEEEEEEeCCcCcc-----------
Q 012182 60 IVGD-LLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSV----------- 127 (469)
Q Consensus 60 ~a~~-~~~FL~~spT~~hav~~~~~~L~~~GF~~L~e~~~W~l~~g~kyf~~r~~s~iiAf~vG~~~~~----------- 127 (469)
.+.+ |++||++||||||+|++++++|.++||++|+|++.|+.++|||||++|||++||||.+|++|.+
T Consensus 8 ~~~~~f~~FI~~spTpyh~v~~i~~~L~~~Gf~~l~e~~~w~~~~ggkyf~~r~gssliAf~ig~~~~~~~gf~IigaHt 87 (437)
T COG1362 8 LAEDEFIDFISASPTPYHVVANIAERLLKAGFRELEEKDAWKDKPGGKYFVTRNGSSLIAFIIGKKWKLESGFRIIGAHT 87 (437)
T ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHHHcCchhhhhhhcccccCCCeEEEEcCCceEEEEEecCCCCCCCCeEEEEeec
Confidence 4556 9999999999999999999999999999999999999999999999999999999999998732
Q ss_pred ------------------------------------------cEEEEEcCCCcEEEEEeeeCCCeEeecccccccccccc
Q 012182 128 ------------------------------------------GRVIVRGSDGSFLHKLVKVKRPLLRVPTLAIHLDRTVN 165 (469)
Q Consensus 128 ------------------------------------------GrV~~k~~~g~~~~~lv~~~~Pv~~Ip~LaiHL~~~~~ 165 (469)
|||++|++.++.+.++|+.++||++||+|||||+|++|
T Consensus 88 DSP~l~lKp~p~~~~~g~~~~~~e~YGG~~~~~WldrdLsiaGrv~~k~~~~~~~~~lv~~~~Pi~~IP~LaiHL~r~~n 167 (437)
T COG1362 88 DSPRLRLKPNPDIEVEGYLQLGTEVYGGIILYTWLDRDLSIAGRVFVKDGTGKIISRLVDIDDPILRIPDLAIHLDRDVN 167 (437)
T ss_pred CCCCcccCCCchhhhcceeEEeeEecCCeeecceecCccceeeEEEEecCCCcceeeeccCCCCeeecCcchhhcCcchh
Confidence 99999966678899999999999999999999999998
Q ss_pred cCCCCCCccccccceeeccCccccCCccccCCCCCCccCChhHHHHHHHHHhCCCCCceeEEEEEeeecCCccccCCCCc
Q 012182 166 KDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGANNE 245 (469)
Q Consensus 166 ~~~~~~n~~~~l~piig~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV~~gDiv~~dl~l~d~~~~~~~Gl~~e 245 (469)
+++++|+|++|+||+|..+.+. +++|+..||++|++++||.++|+|++||.+||+|+++.+|++++
T Consensus 168 -~~~~~n~~~~l~piig~~~~~~-------------~~~~~~~ll~~iae~~~v~~ed~vs~dL~~~~~~~a~~~G~~~e 233 (437)
T COG1362 168 -KSFEINPQENLNPIIGVIPGEE-------------KNKVKASLLKLLAEQLGVEEEDFVSFDLILVDAQKARLVGADGE 233 (437)
T ss_pred -ccCccCccccceeeEeccCccc-------------ccchhHHHHHHHHHHhCCcHhhhhhceEEEecCCcceeeccchh
Confidence 8899999999999999976221 23578999999999999999999999999999999999999999
Q ss_pred eeeeccccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccccCCcchHHHHHHHHhcccccCCchhh
Q 012182 246 FIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSETS 325 (469)
Q Consensus 246 ~I~~~~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~gA~s~~~~dil~ri~~~~~~~~~~~~~ 325 (469)
||+++|||||+|||++++||+.+++ .+.+.++++||+|||||.|+|||.|+|++++|+||+.+++. +.++
T Consensus 234 fi~a~rlDn~~~~~a~m~AL~~~~~-------~~~~~v~~~fD~EEIGS~s~~GAds~fL~~vLeri~~a~~~---~~~~ 303 (437)
T COG1362 234 FLSAPRLDNLICCHAGMEALLAAAN-------SDKTCVLALFDHEEIGSLSAQGADSPFLENVLERIILALGG---SRDD 303 (437)
T ss_pred hhccCCccchHHHHHHHHHHHhccC-------CCCceEEEEechhhcccccccCcCchhHHHHHHHHHHHccC---ChHH
Confidence 9999999999999999999998743 45578899999999999999999999999999999998876 6777
Q ss_pred hhhhccCceEEEEecCCCCCCCCCccccCCCCCcCCCCceEEEcCCCCcccCHHHHHHHHHHHHHCCCCEeEEEeecCCC
Q 012182 326 FECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMG 405 (469)
Q Consensus 326 ~~~~~~~s~~IS~DvahA~~Pn~~~~~~~~~~~~LG~GpvIk~~~~~~y~t~~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~ 405 (469)
+.+++.+|++||+||+||+||||+++||++|.|.||+|||||+++|+||+||+.+.++++++|+++|||||.|++|+|.+
T Consensus 304 ~~~~l~nS~~iSaD~ahaihPny~~~hd~~n~p~ln~G~vik~~an~ry~td~~~~a~~~~l~~~~~Vp~Q~f~~~~d~~ 383 (437)
T COG1362 304 HLRALANSFLISADVAHAIHPNYPEKHDPNNAPKLNKGPVIKVNANQRYATDSEGIALLRKLAQKAGVPWQVFVLRNDVP 383 (437)
T ss_pred HHHHHhhceeeehhhHhhcCCCCccccCcccCCccCCCceEEecCCCCcccCchHHHHHHHHHHHcCCceEEEEecccCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHhcCCCCcEEEechhhccccchhhhcCHHHHHHHHHHHHHHHhh
Q 012182 406 CGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYES 457 (469)
Q Consensus 406 gGgTig~i~~s~~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll~af~~~ 457 (469)
|||||||++++++||+|||||+|+|+|||+||+++..|++.+++++++||++
T Consensus 384 ~Gstigpi~aa~tGi~tIDiG~~~LsMHS~rE~~g~~D~~~~~~~~~aFf~~ 435 (437)
T COG1362 384 CGSTIGPILAARTGIRTIDIGPALLSMHSIRELSGSADLYEAYKALSAFFEN 435 (437)
T ss_pred CCcccchhHHhhcCCceeecchhhhhhccHHHHcchhHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999986
No 4
>PF02127 Peptidase_M18: Aminopeptidase I zinc metalloprotease (M18); InterPro: IPR001948 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M18, (clan MH). The proteins have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal aminoacid, usually neutral or hydrophobic, from a polypeptide []. The type example is aminopeptidase I from Saccharomyces cerevisiae (Baker's yeast), the sequence of which has been deduced, and the mature protein shown to consist of 469 amino acids []. A 45-residue presequence contains both positively- and negatively-charged and hydrophobic residues, which could be arranged in an N-terminal amphiphilic alpha-helix []. The presequence differs from signal sequences that direct proteins across bacterial plasma membranes and endoplasmic reticulum or into mitochondria. It is unclear how this unique presequence targets aminopeptidase I to yeast vacuoles, and how this sorting utilises classical protein secretory pathways [].; GO: 0004177 aminopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1Y7E_A 2GLJ_R 4DYO_A 2IJZ_B 3VAT_A 3VAR_A 2GLF_B.
Probab=100.00 E-value=2.3e-102 Score=814.65 Aligned_cols=378 Identities=50% Similarity=0.802 Sum_probs=325.8
Q ss_pred HHhcCCChHHHHHHHHHHHHHCCCcccccCCcccccCCCeEEEEeCCcEEEEEEeCCcCcc-------------------
Q 012182 67 YLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSV------------------- 127 (469)
Q Consensus 67 FL~~spT~~hav~~~~~~L~~~GF~~L~e~~~W~l~~g~kyf~~r~~s~iiAf~vG~~~~~------------------- 127 (469)
||++||||||||++++++|+++||++|+|+++|+++||+|||++||+++||||++|+++.+
T Consensus 1 Fl~~spT~~Hav~~~~~~L~~~GF~eL~e~~~W~l~~ggkyy~~r~~ssliAF~vg~~~~~~~G~~ivgaHtDSP~lklK 80 (432)
T PF02127_consen 1 FLDKSPTPFHAVANAKERLEKAGFTELDETEKWDLKPGGKYYVTRNGSSLIAFAVGGKFPPGNGFRIVGAHTDSPCLKLK 80 (432)
T ss_dssp HHHTTSSHHHHHHHHHHHHHHTTHEESTTTSSTT--TTSEEEEEETTTEEEEEEEETTS-GCG-EEEEEEE---SEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCeEcccccccCCCCCCEEEEEeCCCEEEEEEeCCcCCcccceEEEEEecCCCCeeec
Confidence 8999999999999999999999999999999999999999999999999999999998532
Q ss_pred ----------------------------------cEEEEEcC-CCcEEEEEeeeCCCeEeecccccccccccccCCCCCC
Q 012182 128 ----------------------------------GRVIVRGS-DGSFLHKLVKVKRPLLRVPTLAIHLDRTVNKDGFKPN 172 (469)
Q Consensus 128 ----------------------------------GrV~~k~~-~g~~~~~lv~~~~Pv~~Ip~LaiHL~~~~~~~~~~~n 172 (469)
|||++|++ .|+++++||++++||++||+|||||+|+.| +++++|
T Consensus 81 p~~~~~~~g~~~l~ve~YGG~i~~tW~DR~L~laGrV~~k~~~~~~~~~~lv~~~~pv~~IP~LAiHL~r~~n-~~~~~n 159 (432)
T PF02127_consen 81 PNPEYESDGYAQLNVEVYGGGIWHTWFDRPLSLAGRVVVKDGDEGKPESKLVDIDRPVAIIPNLAIHLDREVN-EGFKLN 159 (432)
T ss_dssp EEEEEEETTEEEEEEEEESS--GGGGTTS-EEEEEEEEETTTTTEEEEEESCSTTS-BBBSS---GGGSTTTT-TS-CTT
T ss_pred CCCccccCCEEEEeeEcCCCcccccccCCccceeEEEEEeeCCCCceeEEEEeCCCCEEEeCCchhccccccc-ccCCcc
Confidence 99999987 478999999999999999999999999988 779999
Q ss_pred ccccccceeeccCccccCCccccCCCCCCccCChhHHHHHHHHHhCCCCCceeEEEEEeeecCCccccCCCCceeeeccc
Q 012182 173 LETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGANNEFIFSGRL 252 (469)
Q Consensus 173 ~~~~l~piig~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV~~gDiv~~dl~l~d~~~~~~~Gl~~e~I~~~~l 252 (469)
+|+||.|+++.......+. +++++ +++|+..|+++|++++||+++||+++||++||+||++++|+++|||+|+||
T Consensus 160 ~q~~l~pi~~~~~~~~~~~--~~~~~---~~~~~~~ll~~la~~~gi~~~dIl~~DL~l~d~~~~~~~G~~~efI~s~rl 234 (432)
T PF02127_consen 160 KQKHLEPILGLSGESSLPE--DDEED---KNRHKPSLLKLLAEELGIEEEDILDFDLYLYDAQPARIVGLDEEFISSPRL 234 (432)
T ss_dssp TSTTSGGEEEECCHHHHHT--TTSSS---SSHHHHHHHHHHHHHHT--GGGCCCEEEEEEEES--EEETTTTSEEEETTH
T ss_pred ccccccCeEeecccccccc--ccccc---ccchhHHHHHHHHHHhCCCHHHhccceEEEEecCCCeEecCchhhhhccCc
Confidence 9999999999865211000 01111 357889999999999999999999999999999999999999999999999
Q ss_pred cchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccccCCcchHHHHHHHHhcccccCCchhhhhhhccC
Q 012182 253 DNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSETSFECTIRQ 332 (469)
Q Consensus 253 Dnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~gA~s~~~~dil~ri~~~~~~~~~~~~~~~~~~~~ 332 (469)
|||+|||++++||++.... ++.+.+.+.++++||+|||||.|++||.|.|++++|+||..+++. +.+.+++++++
T Consensus 235 Dnl~s~~a~l~Al~~~~~~--~~~~~~~~~v~~~fD~EEiGS~s~~GA~S~fl~~~l~ri~~~~~~---~~~~~~~~l~~ 309 (432)
T PF02127_consen 235 DNLASCYAALEALIDSSND--SLEPEDGTNVVVLFDNEEIGSESRQGADSPFLEDVLERILAALGG---SREFYRRILAN 309 (432)
T ss_dssp HHHHHHHHHHHHHHHHTSS--CCCCSSSEEEEEEESSGGGTSTSTTSTTSTHHHHHHHHHHHHCST---TTHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHhhhcc--cccccCceEEEEEEcccccCCCccccccchHHHHHHHHHHHhcCC---CHHHHHHHhhc
Confidence 9999999999999998542 122345789999999999999999999999999999999999875 44667788899
Q ss_pred ceEEEEecCCCCCCCCCccccCCCCCcCCCCceEEEcCCCCcccCHHHHHHHHHHHHHCCCCEeEEEeecCCCCCCChHH
Q 012182 333 SFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGP 412 (469)
Q Consensus 333 s~~IS~DvahA~~Pn~~~~~~~~~~~~LG~GpvIk~~~~~~y~t~~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~ 412 (469)
|++||+||+||+||||+++||++|+|.||+|||||++++|+|+||....++++++|++++||||.|++|+|.+||||+||
T Consensus 310 S~~lSaD~aHa~HPny~~~~d~~~~p~l~~G~viK~~a~q~yatd~~~~a~~~~i~~~~~ip~Q~f~~r~d~~~GsTiGp 389 (432)
T PF02127_consen 310 SFLLSADVAHAVHPNYPEKHDPNNQPLLNKGPVIKKNANQRYATDAASAAVFREICEKAGIPWQEFVNRSDDPGGSTIGP 389 (432)
T ss_dssp -EEEEE--EEB-BTTSGGGS-TTTSBSTTS-EEEESETTTTSSS-HHHHHHHHHHHHHHH--EEEEESSSTSSS--HHHH
T ss_pred CcEECcCcccccCCCcchhccccCCCcCCcccEEEEeCCCCcccCHHHHHHHHHHHHHcCCCeEEEEecCCCCCCccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcEEEechhhccccchhhhcCHHHHHHHHHHHHHHH
Q 012182 413 ILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFY 455 (469)
Q Consensus 413 i~~s~~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll~af~ 455 (469)
++++++||+|||||+|+|+|||+|||+++.|++++++++++||
T Consensus 390 i~sa~~gi~tvDiG~P~LsMHS~rE~~g~~D~~~~~~~~~aFf 432 (432)
T PF02127_consen 390 ILSARLGIRTVDIGIPQLSMHSIRETAGKKDIYYLYKAFKAFF 432 (432)
T ss_dssp HHHHCCTSEEEEEE-EEESTTSSSEEEEHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCCEEEechhhhhcccHHHHhccccHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999996
No 5
>PRK02813 putative aminopeptidase 2; Provisional
Probab=100.00 E-value=9.7e-100 Score=796.31 Aligned_cols=371 Identities=47% Similarity=0.769 Sum_probs=349.7
Q ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHCCCcccccCCcccccCCCeEEEEeCCcEEEEEEeCCcCcc---------
Q 012182 57 SSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSV--------- 127 (469)
Q Consensus 57 ~~~~a~~~~~FL~~spT~~hav~~~~~~L~~~GF~~L~e~~~W~l~~g~kyf~~r~~s~iiAf~vG~~~~~--------- 127 (469)
.++++++|++||++||||||||++++++|+++||++|+|+++|+++||+|||++||+++|+||++|+++.+
T Consensus 4 ~~~~~~~~~~fl~~s~t~~hav~~~~~~L~~~Gf~~l~e~~~w~l~~g~kyy~~r~~~sliAf~vg~~~~~~~g~~iv~a 83 (428)
T PRK02813 4 ARAFAQDLLDFIDASPSPFHAVANVAQRLEAAGFTELDETDAWKLEPGGRYYVVRNGSSLIAFRVGEGAPAETGFRIVGA 83 (428)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCeeccccccCccCCCCEEEEEcCCcEEEEEEeCCCCccCCCeEEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999987521
Q ss_pred --------------------------------------------cEEEEEcCCCcEEEEEeeeCCCeEeecccccccccc
Q 012182 128 --------------------------------------------GRVIVRGSDGSFLHKLVKVKRPLLRVPTLAIHLDRT 163 (469)
Q Consensus 128 --------------------------------------------GrV~~k~~~g~~~~~lv~~~~Pv~~Ip~LaiHL~~~ 163 (469)
|||++++++ +++.+||+.++||++||+|||||+|+
T Consensus 84 H~DsP~l~lKp~~~~~~~g~~~l~ve~YGG~~~~tW~Dr~L~laGrV~~~~~~-~~~~~l~~~~~pv~~Ip~LaiHL~~~ 162 (428)
T PRK02813 84 HTDSPGLRVKPNPDTGEAGYLQLNVEVYGGPILNTWLDRDLSLAGRVVLRDGN-KPESRLVNIDRPILRIPNLAIHLNRE 162 (428)
T ss_pred eccCCCeeeccCCcccCCCEEEEeeEECCCchhccccCCCcccceEEEEecCC-EeEEEEEeCCCCeEEeCcchhccCcc
Confidence 999999764 89999999999999999999999999
Q ss_pred cccCCCCCCccccccceeeccCccccCCccccCCCCCCccCChhHHHHHHHHHhCCCCCceeEEEEEeeecCCccccCCC
Q 012182 164 VNKDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGAN 243 (469)
Q Consensus 164 ~~~~~~~~n~~~~l~piig~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV~~gDiv~~dl~l~d~~~~~~~Gl~ 243 (469)
+| +++++|+|.+|.||++... +.++..|++++++++||++||+++||++++|++|++++|++
T Consensus 163 ~~-~g~~~n~~~~~~Pi~~~~~-----------------~~~~~~~l~~la~~~gi~~~Div~~dl~~~d~~~~~~~G~~ 224 (428)
T PRK02813 163 VN-EGLKLNPQKHLLPILLNGV-----------------GEKEGDFLELLAEELGVDADDILDFDLFLYDTQPGALIGAN 224 (428)
T ss_pred cc-cccCcccccCCcceecccc-----------------cccchHHHHHHHHHcCCCcCCEEEEEEEEEEcccceeeccC
Confidence 98 8999999999999974211 12356799999999999999999999999999999999999
Q ss_pred CceeeeccccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccccCCcchHHHHHHHHhcccccCCch
Q 012182 244 NEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSE 323 (469)
Q Consensus 244 ~e~I~~~~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~gA~s~~~~dil~ri~~~~~~~~~~~ 323 (469)
++||.|+|||||+|||+++++|+++.+ +.+.++++||||||||+|++||.+.|++++|+||..+++. ++
T Consensus 225 ~e~i~s~~lDnr~~~~~~l~al~~~~~--------~~~~~~~~~d~EEVGs~~~~GA~s~~l~~~l~ri~~~~~~---~~ 293 (428)
T PRK02813 225 GEFISSGRLDNLSSCHAGLEALLAAAS--------DATNVLAAFDHEEVGSATKQGADSPFLEDVLERIVLALGG---DR 293 (428)
T ss_pred CCEEEEecchhHHHHHHHHHHHHhcCC--------CCeEEEEEEecCccCCCCCcccCchhHHHHHHHHHHhhcC---ch
Confidence 999999999999999999999998741 4478999999999999999999999999999999998875 67
Q ss_pred hhhhhhccCceEEEEecCCCCCCCCCccccCCCCCcCCCCceEEEcCCCCcccCHHHHHHHHHHHHHCCCCEeEEEeecC
Q 012182 324 TSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRND 403 (469)
Q Consensus 324 ~~~~~~~~~s~~IS~DvahA~~Pn~~~~~~~~~~~~LG~GpvIk~~~~~~y~t~~~~~~~l~~ia~~~~Ip~Q~~v~r~D 403 (469)
+.+.+++++|++||+||+||.||||++++++.|.+.||+||+||++++++|++|+.+.++++++|+++|||||.++.|+|
T Consensus 294 ~~~~~~i~~s~~IS~DvahA~hPn~~~~~~~~~~~~lg~GpvIk~~~~~~y~t~~~~~a~~~~ia~~~~Ip~Q~~v~~~d 373 (428)
T PRK02813 294 EDFLRALARSFLISADMAHAVHPNYPEKHDPTHRPLLNKGPVIKINANQRYATDAESAAVFKLLCEKAGVPYQEFVNRSD 373 (428)
T ss_pred HHHHHhhCCCeEEEEeccCCCCCCCCCccCcccCccCCcCCeEEECCCCCcccCHHHHHHHHHHHHHcCCCEEEEEecCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHhcCCCCcEEEechhhccccchhhhcCHHHHHHHHHHHHHHHhh
Q 012182 404 MGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYES 457 (469)
Q Consensus 404 ~~gGgTig~i~~s~~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll~af~~~ 457 (469)
++||||+|+|++++.||||+|||+|+|||||+|||++++|++++++|+++||+.
T Consensus 374 ~~gGstig~i~~s~~Gi~tvdiGiP~l~MHS~~E~~~~~D~~~~~~l~~~f~~~ 427 (428)
T PRK02813 374 MPCGSTIGPITAARLGIRTVDVGAPMLAMHSARELAGVKDHAYLIKALTAFFSG 427 (428)
T ss_pred CCCccHHHHHHHhCCCCcEEEeChhhcccccHHHHccHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999964
No 6
>PRK02256 putative aminopeptidase 1; Provisional
Probab=100.00 E-value=1.7e-99 Score=798.01 Aligned_cols=399 Identities=23% Similarity=0.318 Sum_probs=360.5
Q ss_pred CCCccccCCCCCccccccccccchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHCCCcccccCCcccccCCCeEEEEeCC
Q 012182 34 SSNRYRPRTLHNFSTSGIAQSSSSSSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNM 113 (469)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~FL~~spT~~hav~~~~~~L~~~GF~~L~e~~~W~l~~g~kyf~~r~~ 113 (469)
++|.|++.++|. .+++..++.+..++++|++||++||||||||++++++|+++||++|+|++ +++||+|||++||+
T Consensus 3 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Fl~~sptp~Hav~~~~~~L~~~GF~el~e~~--~l~~g~kyy~~r~~ 78 (462)
T PRK02256 3 KKLTYKKKNAWE--KYSEEEKEEIFAFAEDYKDFLSKCKTEREAVKEIIELAEEKGFINLEEII--GLKPGDKVYAVNRG 78 (462)
T ss_pred ccccccccChhh--hCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCeeccccc--ccCCCCEEEEEcCC
Confidence 456899999999 66666777777899999999999999999999999999999999999999 57899999999999
Q ss_pred cEEEEEEeCCcC--c-----------c---------------------------------------cEEEEEcCCCcEEE
Q 012182 114 SCLVAFAVGQKY--S-----------V---------------------------------------GRVIVRGSDGSFLH 141 (469)
Q Consensus 114 s~iiAf~vG~~~--~-----------~---------------------------------------GrV~~k~~~g~~~~ 141 (469)
++||||++|+++ . | |||++|++. ++..
T Consensus 79 ssliAf~ig~~~~~~g~~iv~aHtDsP~lklKP~~~~~~~g~~~l~ve~YGG~l~~tW~DRdL~lAGrV~~~~~~-~~~~ 157 (462)
T PRK02256 79 KSVALAVIGKEPLEEGLNIIGAHIDSPRLDLKPNPLYEDEGLALLKTHYYGGIKKYQWVAIPLALHGVVVKKDGT-KVEI 157 (462)
T ss_pred CEEEEEEeCCCCCCCceEEEEEecCCCCceecCCCccccCCeeEeCeEecCCcccccccCCCceeeeEEEEecCC-EEEE
Confidence 999999999874 1 1 999999632 4667
Q ss_pred EE-eeeCCCeEeecccccccccccc-cCCCCCCccccccceeeccCccccCCccccCCCCCCccCChhHHHHHHHHHhCC
Q 012182 142 KL-VKVKRPLLRVPTLAIHLDRTVN-KDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGC 219 (469)
Q Consensus 142 ~l-v~~~~Pv~~Ip~LaiHL~~~~~-~~~~~~n~~~~l~piig~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV 219 (469)
++ ++.++||++||+|||||+|+.| ++++++|+|+||.||+|..+.+. ++ .++|+..|+++|++++||
T Consensus 158 ~l~~~~~~pi~~IP~LAiHl~r~~n~~~~~~~n~q~~l~pi~~~~~~~~-------~~----~~~~~~~ll~~la~~~~v 226 (462)
T PRK02256 158 VIGEDENDPVFTISDLLPHLAKDQMEKKASEAIEGEKLNILIGSIPLED-------EE----KEKVKLNILKLLNEKYGI 226 (462)
T ss_pred EecccCCCCeEEcCchhhhhCchhhhccccccCccCCcceeeccCCccc-------cc----cccchHHHHHHHHHHhCC
Confidence 77 6899999999999999999986 24789999999999999754221 10 124678899999999999
Q ss_pred CCCceeEEEEEeeecCCccccCCCCceeeeccccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccc
Q 012182 220 GTDDIASIELNICDTQPSCLGGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQG 299 (469)
Q Consensus 220 ~~gDiv~~dl~l~d~~~~~~~Gl~~e~I~~~~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~g 299 (469)
+++||++|||++||+||++++|+++|||+|+|||||+|||+++++|+++.+ .+.+.++++||||||||+|++|
T Consensus 227 ~~~dI~~~DL~l~d~q~~~~~G~~~efI~s~rLDNr~~~~~~leal~~~~~-------~~~~~~~~~~dqEEVGs~ga~g 299 (462)
T PRK02256 227 TEEDFVSAELEVVPAGKARDVGLDRSLIGAYGQDDRVCAYTSLEALLELEN-------PEKTAVVLLVDKEEIGSEGNTG 299 (462)
T ss_pred CHHHeeeceEEEecCCCcceeccccceeeccccccHHHHHHHHHHHHhccc-------CCCeEEEEEEcccccCCcchhh
Confidence 999999999999999999999999999999999999999999999998742 3457899999999999999999
Q ss_pred cCCcchHHHHHHHHhcccccCCchhhhhhhccCceEEEEecCCCCCCCCCccccCCCCCcCCCCceEE-E-cCCCCccc-
Q 012182 300 AGAPTMFQAIRRIVGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIK-H-NANQRYAT- 376 (469)
Q Consensus 300 A~s~~~~dil~ri~~~~~~~~~~~~~~~~~~~~s~~IS~DvahA~~Pn~~~~~~~~~~~~LG~GpvIk-~-~~~~~y~t- 376 (469)
|+|.|++++|+||..+++.. .+++++.+++++|++||+||+||.||||++++++.|.+.||+||+|| . +++|+|++
T Consensus 300 A~s~~l~~~l~Ri~~~~~pd-~~~~~~~~~~~~S~~IS~Dvaha~hPn~~~~~~~~~~~~Lg~GpvIk~~d~~~~~y~t~ 378 (462)
T PRK02256 300 AQSRFFENFVAELLAKTEGN-YSDLKLRRALANSKALSADVSAAFDPNYPSVHEKQNAAYLGYGVVFTKYTGSRGKYGAN 378 (462)
T ss_pred hcchhHHHHHHHHHHhcCCC-cchHHHHHHHhccEEEEEeCCCCCCCCCCcccCcccCccCCCCcEEEEEcCCCCccccc
Confidence 99999999999999877531 14678999999999999999999999999999999999999999996 6 58999999
Q ss_pred --CHHHHHHHHHHHHHCCCCEeEE-EeecCCCCCCChHHHHhcCCCCcEEEechhhccccchhhhcCHHHHHHHHHHHHH
Q 012182 377 --SGVTAFLFKEIAKLHNLPTQEF-VVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKA 453 (469)
Q Consensus 377 --~~~~~~~l~~ia~~~~Ip~Q~~-v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll~a 453 (469)
|+.+.++++++|+++|||||.+ +.|||.+||||+|++++ +.||||+|||+|+|||||+|||++++|++++++|+++
T Consensus 379 ~~~~~~~~~i~~iA~~~~Ip~Q~~~~~r~d~~~GgTig~~~s-~~Gi~tvdiGiP~l~MHS~rE~~~~~D~~~~~~ll~~ 457 (462)
T PRK02256 379 DANAEFVAEVRNLFNKNNVVWQTAELGKVDQGGGGTIAKFLA-NYGMEVIDCGVALLSMHSPFEIASKADIYETYKAYKA 457 (462)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCcChHHHHHc-CCCCcEEEechhhhccccHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999995 66999999999999998 8999999999999999999999999999999999999
Q ss_pred HHhh
Q 012182 454 FYES 457 (469)
Q Consensus 454 f~~~ 457 (469)
||++
T Consensus 458 f~~~ 461 (462)
T PRK02256 458 FLEE 461 (462)
T ss_pred HHhh
Confidence 9964
No 7
>PRK09864 putative peptidase; Provisional
Probab=100.00 E-value=7e-46 Score=380.57 Aligned_cols=235 Identities=17% Similarity=0.097 Sum_probs=202.6
Q ss_pred EeecccccccccccccCCCCCCccccccceeeccCccccCCccccCCCCCCccCChhHHHHHHHHHhCCCCCceeEEEEE
Q 012182 151 LRVPTLAIHLDRTVNKDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELN 230 (469)
Q Consensus 151 ~~Ip~LaiHL~~~~~~~~~~~n~~~~l~piig~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV~~gDiv~~dl~ 230 (469)
++|+..+||+.++.+++ +..+.++|++++|..+++ .++++||++||+|+|+..
T Consensus 108 GVig~~~~H~~~~~~~~--k~~~~~~l~IDiGa~s~e-------------------------e~~~~GV~vGD~v~~~~~ 160 (356)
T PRK09864 108 GVIGSVAPHALTEKQKQ--QPLSFDEMFIDIGANSRE-------------------------EVEKRGVEIGDFISPEAN 160 (356)
T ss_pred EEEeCCccccCChhHcc--cCCChhHEEEEeCCCCHH-------------------------HHHhcCCCCCCEEEECCC
Confidence 99999999999876544 677779999999997753 577899999999999988
Q ss_pred eeecCCccccCCCCceeeeccccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccccCCcchHHHHH
Q 012182 231 ICDTQPSCLGGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIR 310 (469)
Q Consensus 231 l~d~~~~~~~Gl~~e~I~~~~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~gA~s~~~~dil~ 310 (469)
+.. ++++++.||+||||+||++++++|+++++ .+...+++|++|||||.|||++|++.+.|
T Consensus 161 ~~~--------l~~~~i~~kalDnR~g~~~lle~l~~l~~-------~~~~vy~v~TvQEEvGlrGA~~aa~~i~P---- 221 (356)
T PRK09864 161 FAC--------WGEDKVVGKALDNRIGCAMMAELLQTVNN-------PEITLYGVGSVEEEVGLRGAQTSAEHIKP---- 221 (356)
T ss_pred cEE--------EcCCEEEEEeCccHHHHHHHHHHHHHhhc-------CCCeEEEEEEcchhcchHHHHHHHhcCCC----
Confidence 654 25678999999999999999999998852 34568999999999999999999988655
Q ss_pred HHHhcccccCCchhhhhhhccCceEEEEecCCCCCCCCCccccCCCCCcCCCCceEEEcCCCCcccCHHHHHHHHHHHHH
Q 012182 311 RIVGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKL 390 (469)
Q Consensus 311 ri~~~~~~~~~~~~~~~~~~~~s~~IS~DvahA~~Pn~~~~~~~~~~~~LG~GpvIk~~~~~~y~t~~~~~~~l~~ia~~ 390 (469)
+++|++|++++.|. |+........+||+||+|+.++++ .++|+.+.++++++|++
T Consensus 222 ----------------------DiaIavDvt~~~d~--p~~~~~~~~~~lG~Gp~i~~~D~~-~i~~~~l~~~l~~~A~~ 276 (356)
T PRK09864 222 ----------------------DVVIVLDTAVAGDV--PGIDNIKYPLKLGQGPGLMLFDKR-YFPNQKLVAALKSCAAH 276 (356)
T ss_pred ----------------------CEEEEEecccCCCC--CCCcccccccccCCCCeEEEccCC-ccCCHHHHHHHHHHHHH
Confidence 57999999999763 222222235789999999998876 88999999999999999
Q ss_pred CCCCEeEEEeecCCCCCCC-hHHHHhcCCCCcEEEechhhccccchhhhcCHHHHHHHHHHHHHHHhhccc
Q 012182 391 HNLPTQEFVVRNDMGCGST-IGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFSS 460 (469)
Q Consensus 391 ~~Ip~Q~~v~r~D~~gGgT-ig~i~~s~~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll~af~~~~~~ 460 (469)
+|||||+.+. ++||| .+.++.++.||||+.||+|+||||||.||++++|++++++|+.+|++++++
T Consensus 277 ~~Ip~Q~~~~----~~ggTDa~~i~~~~~Gvpt~~isiP~RY~Hs~~e~~~~~D~e~~~~Ll~~~~~~l~~ 343 (356)
T PRK09864 277 NDLPLQFSTM----KTGATDGGRYNVMGGGRPVVALCLPTRYLHANSGMISKADYDALLTLIRDFLTTLTA 343 (356)
T ss_pred cCCCceEEEc----CCCCchHHHHHHhCCCCcEEEEeeccCcCCCcceEeEHHHHHHHHHHHHHHHHhcch
Confidence 9999999875 44566 689999999999999999999999999999999999999999999998864
No 8
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.5e-43 Score=358.44 Aligned_cols=240 Identities=21% Similarity=0.188 Sum_probs=207.4
Q ss_pred CCCe-EeecccccccccccccCCCCCCccccccceeeccCccccCCccccCCCCCCccCChhHHHHHHHHHhCCCCCcee
Q 012182 147 KRPL-LRVPTLAIHLDRTVNKDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIA 225 (469)
Q Consensus 147 ~~Pv-~~Ip~LaiHL~~~~~~~~~~~n~~~~l~piig~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV~~gDiv 225 (469)
.+++ ++|.+.+||+.++.+ +.-+..+-++|++++|..+++ .++++||++||++
T Consensus 107 g~~i~GvIg~~p~H~~~~~~-~~~~~~~~~el~iDiga~ske-------------------------ea~~lGI~vGd~v 160 (355)
T COG1363 107 GKKIRGVIGSKPPHLLKEEA-ERKKPPEWDELFIDIGASSKE-------------------------EAEELGIRVGDFV 160 (355)
T ss_pred CcEEeeeEcccCccccCccc-cccCCCchhhEEEECCcCCHH-------------------------HHHhcCCCCCCEE
Confidence 3466 999999999997542 112556679999999997753 6899999999999
Q ss_pred EEEEEeeecCCccccCCCCceeeeccccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccccCCcch
Q 012182 226 SIELNICDTQPSCLGGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTM 305 (469)
Q Consensus 226 ~~dl~l~d~~~~~~~Gl~~e~I~~~~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~gA~s~~~ 305 (469)
+|+..+... ++++|.|++||||+||++++++++++++. +.+.++|+++++|||||+|||++++..+.
T Consensus 161 ~~~~~~~~l--------~~~~i~skalDdR~gva~lle~lk~l~~~-----~~~~~vy~v~tvqEEVGlrGA~~~a~~i~ 227 (355)
T COG1363 161 VFDPRFREL--------ANGRVVSKALDDRAGVAALLELLKELKGI-----ELPADVYFVASVQEEVGLRGAKTSAFRIK 227 (355)
T ss_pred EEcCceEEe--------cCCcEEeeeccchHhHHHHHHHHHHhccC-----CCCceEEEEEecchhhccchhhccccccC
Confidence 999887764 56899999999999999999999999521 35678999999999999999999998875
Q ss_pred HHHHHHHHhcccccCCchhhhhhhccCceEEEEecCCCCC-CCCCccccCCCCCcCCCCceEEEcCCCCcccCHHHHHHH
Q 012182 306 FQAIRRIVGSLAHEHVSETSFECTIRQSFLVSADMAHGVH-PNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLF 384 (469)
Q Consensus 306 ~dil~ri~~~~~~~~~~~~~~~~~~~~s~~IS~DvahA~~-Pn~~~~~~~~~~~~LG~GpvIk~~~~~~y~t~~~~~~~l 384 (469)
| +++|++|++++.| |..+ ....+||+||+|+..+++ ...|+.+..+|
T Consensus 228 p--------------------------d~aiavd~~~~~d~~~~~-----~~~~~lg~Gp~i~~~D~~-~~~~~~l~~~L 275 (355)
T COG1363 228 P--------------------------DIAIAVDVTPAGDTPGVP-----KGDVKLGKGPVIRVKDAS-GIYHPKLRKFL 275 (355)
T ss_pred C--------------------------CEEEEEecccccCCCCCc-----ccccccCCCCEEEEEcCC-CCCCHHHHHHH
Confidence 5 5699999999987 4443 346899999999999887 56799999999
Q ss_pred HHHHHHCCCCEeEEEeecCCCCCCC-hHHHHhcCCCCcEEEechhhccccchhhhcCHHHHHHHHHHHHHHHhhcccc
Q 012182 385 KEIAKLHNLPTQEFVVRNDMGCGST-IGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFSSI 461 (469)
Q Consensus 385 ~~ia~~~~Ip~Q~~v~r~D~~gGgT-ig~i~~s~~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll~af~~~~~~~ 461 (469)
.++|+++|||||..+. ++||| ++.++.++.||||+.||+|+|||||+.|+++++|++++.+|+.+|++++...
T Consensus 276 ~~~A~~~~Ip~Q~~v~----~~ggTDA~a~~~~g~gvpta~Igip~ry~Hs~~e~~~~~D~~~~~~Ll~~~i~~~~~~ 349 (355)
T COG1363 276 LELAEKNNIPYQVDVS----PGGGTDAGAAHLTGGGVPTALIGIPTRYIHSPVEVAHLDDLEATVKLLVAYLESLDRE 349 (355)
T ss_pred HHHHHHcCCCeEEEec----CCCCccHHHHHHcCCCCceEEEecccccccCcceeecHHHHHHHHHHHHHHHHhcchh
Confidence 9999999999999996 45555 7899999999999999999999999999999999999999999999988754
No 9
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=100.00 E-value=9.4e-43 Score=357.56 Aligned_cols=233 Identities=13% Similarity=0.080 Sum_probs=197.1
Q ss_pred Eeecccccccccccc-cCCCCCCccccccceeeccCccccCCccccCCCCCCccCChhHHHHHHHHHhCCCCCceeEEEE
Q 012182 151 LRVPTLAIHLDRTVN-KDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIEL 229 (469)
Q Consensus 151 ~~Ip~LaiHL~~~~~-~~~~~~n~~~~l~piig~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV~~gDiv~~dl 229 (469)
++|+..+||+.++.+ ++ +..+.++|++++|..+++ .++++||++||+|+++.
T Consensus 109 GViG~~~~Hl~~~~~~~~--~~~~~~~l~IDiGa~ske-------------------------e~~~~GI~vGd~v~~~~ 161 (350)
T TIGR03107 109 VISGSVPPHLLRGSSGGP--QLPAVSDILFDGGFTNKD-------------------------EAWSFGVRPGDVIVPQT 161 (350)
T ss_pred EEEeCCcccccChhhccc--ccCChhhEEEEeCCCCHH-------------------------HHHhcCCCCCCEEEECC
Confidence 899999999987543 22 555678999999997753 57889999999999998
Q ss_pred EeeecCCccccCCCCceeeeccccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccccCCcchHHHH
Q 012182 230 NICDTQPSCLGGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAI 309 (469)
Q Consensus 230 ~l~d~~~~~~~Gl~~e~I~~~~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~gA~s~~~~dil 309 (469)
.+.... +++++.||+||||+||++++++|+++++. +.+..++++|++|||||.|||+.|++.+.|
T Consensus 162 ~~~~~~-------~~~~i~~kalDdR~g~a~l~e~l~~l~~~-----~~~~~l~~~~tvqEEvG~rGA~~aa~~i~p--- 226 (350)
T TIGR03107 162 ETILTA-------NGKNVISKAWDNRYGVLMILELLESLKDQ-----ELPNTLIAGANVQEEVGLRGAHVSTTKFNP--- 226 (350)
T ss_pred CeEEEc-------CCCEEEEeccccHHHHHHHHHHHHHhhhc-----CCCceEEEEEEChhhcCchhhhhHHhhCCC---
Confidence 775531 45679999999999999999999998642 235568899999999999999999877654
Q ss_pred HHHHhcccccCCchhhhhhhccCceEEEEecCCCCCCCCCccccCCCCCcCCCCceEEEcCCCCcccCHHHHHHHHHHHH
Q 012182 310 RRIVGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAK 389 (469)
Q Consensus 310 ~ri~~~~~~~~~~~~~~~~~~~~s~~IS~DvahA~~Pn~~~~~~~~~~~~LG~GpvIk~~~~~~y~t~~~~~~~l~~ia~ 389 (469)
+++|++|++++.+. ++.. + .+||+||+|+.++++ .+.|+.+.++++++|+
T Consensus 227 -----------------------D~aI~vDv~~~~d~--~~~~---~-~~lg~Gp~i~~~D~~-~i~~~~l~~~l~~~A~ 276 (350)
T TIGR03107 227 -----------------------DIFFAVDCSPAGDI--YGDQ---G-GKLGEGTLLRFFDPG-HIMLPRMKDFLLTTAE 276 (350)
T ss_pred -----------------------CEEEEEecCCcCCC--CCCC---c-cccCCCceEEEecCC-CCCCHHHHHHHHHHHH
Confidence 67999999999762 2211 1 689999999988876 7889999999999999
Q ss_pred HCCCCEeEEEeecCCCCCCC-hHHHHhcCCCCcEEEechhhccccchhhhcCHHHHHHHHHHHHHHHhhccc
Q 012182 390 LHNLPTQEFVVRNDMGCGST-IGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFSS 460 (469)
Q Consensus 390 ~~~Ip~Q~~v~r~D~~gGgT-ig~i~~s~~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll~af~~~~~~ 460 (469)
++|||||+.. .+||| .+.++.++.|+||+.||+|+|||||+.|+++++|++++++|+.+|++.++.
T Consensus 277 ~~~I~~Q~~~-----~~gGtDa~~~~~~~~Gvpt~~i~ip~Ry~Hs~~e~i~~~D~~~~~~Ll~~~i~~l~~ 343 (350)
T TIGR03107 277 EAGIKYQYYV-----AKGGTDAGAAHLKNSGVPSTTIGVCARYIHSHQTLYSIDDFLAAQAFLQAIVKKLDR 343 (350)
T ss_pred HcCCCcEEec-----CCCCchHHHHHHhCCCCcEEEEccCcccccChhheeeHHHHHHHHHHHHHHHHhcCH
Confidence 9999999833 34566 667888899999999999999999999999999999999999999998764
No 10
>PRK09961 exoaminopeptidase; Provisional
Probab=100.00 E-value=1.7e-41 Score=348.16 Aligned_cols=218 Identities=15% Similarity=0.119 Sum_probs=186.1
Q ss_pred CccccccceeeccCccccCCccccCCCCCCccCChhHHHHHHHHHhCCCCCceeEEEEEeeecCCccccCCCCceeeecc
Q 012182 172 NLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGANNEFIFSGR 251 (469)
Q Consensus 172 n~~~~l~piig~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV~~gDiv~~dl~l~d~~~~~~~Gl~~e~I~~~~ 251 (469)
.+.++|++++|..+++ .++++||++||+|+||..++.. +++++.|++
T Consensus 118 ~~~~~l~iDiG~~s~e-------------------------e~~~~GI~~Gd~v~~~~~~~~~--------~~~~i~gka 164 (344)
T PRK09961 118 NDVSAMRVDIGARSYD-------------------------EVMQAGIRPGDRVTFDTTFQVL--------PHQRVMGKA 164 (344)
T ss_pred CCHHHEEEEcCCCCHH-------------------------HHHhcCCCCCCEEEEcceeEEe--------cCCEEEEee
Confidence 4568999999987642 5778999999999999998774 467899999
Q ss_pred ccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccccCCcchHHHHHHHHhcccccCCchhhhhhhcc
Q 012182 252 LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSETSFECTIR 331 (469)
Q Consensus 252 lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~gA~s~~~~dil~ri~~~~~~~~~~~~~~~~~~~ 331 (469)
||||+|||+++++|+++++. +.+..++++||+|||||+|||++|++.+.|
T Consensus 165 lDnR~g~~~lle~l~~l~~~-----~~~~~v~~~~tvqEEvG~rGa~~aa~~i~p------------------------- 214 (344)
T PRK09961 165 FDDRLGCYLLVTLLRELHDA-----ELPAEVWLVASSSEEVGLRGGQTATRAVSP------------------------- 214 (344)
T ss_pred chhhHhHHHHHHHHHHhhhc-----CCCceEEEEEEcccccchHHHHHHHhccCC-------------------------
Confidence 99999999999999988642 234567899999999999999999987644
Q ss_pred CceEEEEecCCCCCCCCCccccCCCCCcCCCCceEEEcCCCCcccCHHHHHHHHHHHHHCCCCEeEEEeecCCCCCCChH
Q 012182 332 QSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIG 411 (469)
Q Consensus 332 ~s~~IS~DvahA~~Pn~~~~~~~~~~~~LG~GpvIk~~~~~~y~t~~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig 411 (469)
+++|++|++++ |++++ .+..+.++||+||+|+.++. ++++|+.+.++++++|++++||||..+.. ++|++++
T Consensus 215 -d~~I~vDv~~~--~d~~~-~~~~~~~~lg~Gp~i~~~D~-~~i~~~~l~~~l~~~A~~~~Ip~Q~~~~~---ggGTDa~ 286 (344)
T PRK09961 215 -DVAIVLDTACW--AKNFD-YGAANHRQIGNGPMLVLSDK-SLIAPPKLTAWIETVAAEIGIPLQADMFS---NGGTDGG 286 (344)
T ss_pred -CEEEEEeccCC--CCCCC-CCCCcccccCCCceEEEccC-CcCCCHHHHHHHHHHHHHcCCCcEEEecC---CCcchHH
Confidence 67999999974 55665 33344689999999998855 59999999999999999999999986541 2345578
Q ss_pred HHHhcCCCCcEEEechhhccccchhhhcCHHHHHHHHHHHHHHHhhccc
Q 012182 412 PILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFSS 460 (469)
Q Consensus 412 ~i~~s~~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll~af~~~~~~ 460 (469)
.++.++.|+||+++|+|+|||||++|+++++|++++++|+.+|++.++.
T Consensus 287 ~~~~~~~Giptv~ig~p~ry~Hs~~E~v~~~D~~~~~~Ll~~~i~~l~~ 335 (344)
T PRK09961 287 AVHLTGTGVPTVVMGPATRHGHCAASIADCRDILQMIQLLSALIQRLTR 335 (344)
T ss_pred HHHHhCCCCCEEEechhhhcccChhheEEHHHHHHHHHHHHHHHHHcCH
Confidence 8999899999999999999999999999999999999999999988754
No 11
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=100.00 E-value=2.7e-41 Score=339.40 Aligned_cols=224 Identities=23% Similarity=0.210 Sum_probs=180.9
Q ss_pred EeecccccccccccccCCCCCCccccccceeeccCccccCCccccCCCCCCccCChhHHHHHHHHHhCCCCCceeEEEEE
Q 012182 151 LRVPTLAIHLDRTVNKDGFKPNLETQLIPLLATKSEETSVEPKEKSSTSSSKVTHHPQLMQILSQELGCGTDDIASIELN 230 (469)
Q Consensus 151 ~~Ip~LaiHL~~~~~~~~~~~n~~~~l~piig~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~la~~~gV~~gDiv~~dl~ 230 (469)
++|...+|||.++..++ +..+.++|++++|..+++ .++++||++||+|+|+..
T Consensus 67 Gvig~~~~H~~~~~~~~--~~~~~~~l~iDiGa~s~e-------------------------e~~~~GV~iGd~v~~~~~ 119 (292)
T PF05343_consen 67 GVIGSKPPHLQSEEERK--KVPKWDDLFIDIGASSKE-------------------------EVEELGVRIGDPVVFDPP 119 (292)
T ss_dssp EEEEE--GGGCCHHHHH--STTEGGGEEEECSGSSHH-------------------------HHHHTTS-TT-EEEES--
T ss_pred EEEcCCCCcccChhhcc--cCCCcceEEEEeccCCHH-------------------------HHHhCCCCCCCEEeecCC
Confidence 88999999998865433 555679999999997653 578999999999999988
Q ss_pred eeecCCccccCCCCceeeeccccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccccCCcchHHHHH
Q 012182 231 ICDTQPSCLGGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIR 310 (469)
Q Consensus 231 l~d~~~~~~~Gl~~e~I~~~~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~gA~s~~~~dil~ 310 (469)
+... ++.+|.|++||||+||++++++|+.+++. ..+..++++|++|||||.|||+.|+..+
T Consensus 120 ~~~~--------~~~~i~gkalDdR~g~~~lle~l~~l~~~-----~~~~~v~~v~tvqEEvG~rGA~~aa~~i------ 180 (292)
T PF05343_consen 120 FREL--------GNGRIVGKALDDRAGCAVLLELLRELKEK-----ELDVDVYFVFTVQEEVGLRGAKTAAFRI------ 180 (292)
T ss_dssp -EEE--------TTTEEEETTHHHHHHHHHHHHHHHHHTTS-----S-SSEEEEEEESSCTTTSHHHHHHHHHH------
T ss_pred eEEe--------CCCEEEEEeCCchhHHHHHHHHHHHHhhc-----CCCceEEEEEEeeeeecCcceeeccccc------
Confidence 7764 46679999999999999999999999753 2346789999999999999999887554
Q ss_pred HHHhcccccCCchhhhhhhccCceEEEEecCCCCC-CCCCccccCCCCCcCCCCceEEEcCCCCcccCHHHHHHHHHHHH
Q 012182 311 RIVGSLAHEHVSETSFECTIRQSFLVSADMAHGVH-PNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAK 389 (469)
Q Consensus 311 ri~~~~~~~~~~~~~~~~~~~~s~~IS~DvahA~~-Pn~~~~~~~~~~~~LG~GpvIk~~~~~~y~t~~~~~~~l~~ia~ 389 (469)
.++++|++|++++.| |..++. ...||+||+|++.+.. ++.|+.+.++|+++|+
T Consensus 181 --------------------~PD~ai~vD~~~a~d~~~~~~~-----~~~lG~Gp~i~~~D~~-~i~~~~l~~~l~~~A~ 234 (292)
T PF05343_consen 181 --------------------KPDIAIAVDVTPAGDTPGSDEK-----EQGLGKGPVIRVGDSS-MIPNPKLVDKLREIAE 234 (292)
T ss_dssp ---------------------CSEEEEEEEEEESSSTTSTTT-----TSCTTS-EEEEEEETT-EESHHHHHHHHHHHHH
T ss_pred --------------------CCCEEEEEeeeccCCCCCCchh-----hccCCCCcEEEEccCC-CCCCHHHHHHHHHHHH
Confidence 557899999999986 433321 2229999999999876 8899999999999999
Q ss_pred HCCCCEeEEEeecCCCCCCC-hHHHHhcCCCCcEEEechhhccccchhhhcCHHHHHHHHHH
Q 012182 390 LHNLPTQEFVVRNDMGCGST-IGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRH 450 (469)
Q Consensus 390 ~~~Ip~Q~~v~r~D~~gGgT-ig~i~~s~~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~l 450 (469)
+++||||+.+. .+||| .+.++.++.|+||+.||+|+|||||+.|+++++|++++++|
T Consensus 235 ~~~Ip~Q~~~~----~~ggTDa~~~~~~~~Gi~t~~i~iP~ry~Hs~~e~~~~~Di~~~~~L 292 (292)
T PF05343_consen 235 ENGIPYQREVF----SGGGTDAGAIQLSGGGIPTAVISIPCRYMHSPVEVIDLDDIEATIDL 292 (292)
T ss_dssp HTT--EEEEEE----SSSSSTHHHHHTSTTSSEEEEEEEEEBSTTSTTEEEEHHHHHHHHHH
T ss_pred HcCCCeEEEec----CCcccHHHHHHHcCCCCCEEEEecccccCCCcceEEEHHHHHHHhhC
Confidence 99999999765 35666 67999999999999999999999999999999999999986
No 12
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=100.00 E-value=9.7e-38 Score=320.08 Aligned_cols=309 Identities=16% Similarity=0.056 Sum_probs=221.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHCCCcccccCCcccccCCCeEEEEeCC-----cEEEEEEeCCc-------Ccc
Q 012182 60 IVGDLLDYLNESWTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNM-----SCLVAFAVGQK-------YSV 127 (469)
Q Consensus 60 ~a~~~~~FL~~spT~~hav~~~~~~L~~~GF~~L~e~~~W~l~~g~kyf~~r~~-----s~iiAf~vG~~-------~~~ 127 (469)
+.++|+++=.-|..+..+.+++++.|++.||. +.. ++ -|+ .+.+.++ +-+++..+=.- ..-
T Consensus 8 lLk~Lv~~~s~SG~E~~V~~~l~~~l~~~g~e-v~~-D~----~Gn-lia~~~g~~~~~~v~l~aHmDevG~~V~~I~~~ 80 (343)
T TIGR03106 8 TLLALLAIPSPTGFTDAVVRYVAERLEDLGIE-YEL-TR----RGA-IRATLPGREATPARAVVTHLDTLGAMVRELKDN 80 (343)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCe-EEE-CC----CeE-EEEEECCCCCCCeEEEEEeeccccceeeEECCC
Confidence 44444444444446788899999999999983 222 22 222 2222211 11222221100 000
Q ss_pred cEEEEEcCCC---c-EE--EEEeee-CCCe-Eee-c-ccccccccccccCCCCCCccc--cccceeeccCccccCCcccc
Q 012182 128 GRVIVRGSDG---S-FL--HKLVKV-KRPL-LRV-P-TLAIHLDRTVNKDGFKPNLET--QLIPLLATKSEETSVEPKEK 195 (469)
Q Consensus 128 GrV~~k~~~g---~-~~--~~lv~~-~~Pv-~~I-p-~LaiHL~~~~~~~~~~~n~~~--~l~piig~~~~~~~~~~~~~ 195 (469)
|.+.+..-.| + +. +..|.. +..+ ++| + ..+||+.++.++. +..+.+ +|++++|..+++
T Consensus 81 G~l~~~~iGG~~~~~l~g~~v~i~t~~g~~~Gvi~~~~~~~H~~~~~~~~--~~~~~~~~~l~iDiG~~s~e-------- 150 (343)
T TIGR03106 81 GRLELVPIGHWSARFAEGARVTIFTDSGEFRGTILPLKASGHAFNEEIDS--QPTGWDHVEVRVDARASCRA-------- 150 (343)
T ss_pred CeEEEEecCCCcccceeCCEEEEEeCCCeEEEEECCCCCCCccCChHHcc--CCCCCcccEEEEECCcCCHH--------
Confidence 4444432101 0 11 112322 3335 899 7 9999998765433 556667 999999997753
Q ss_pred CCCCCCccCChhHHHHHHHHHhCCCCCceeEEEEEeeecCCccccCCCCceeeeccccchhcHHHHHHHHHHcCCCCCCC
Q 012182 196 SSTSSSKVTHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNL 275 (469)
Q Consensus 196 ~~~~~~~~~h~~~ll~~la~~~gV~~gDiv~~dl~l~d~~~~~~~Gl~~e~I~~~~lDnr~g~~~~leal~~~~~~~~~~ 275 (469)
.++++||++||+|+|+..+... .++++.|+++|||+||+++++++++++....
T Consensus 151 -----------------e~~~lGV~~Gd~v~~~~~~~~~--------~~~~i~gr~~D~K~G~a~~l~~~~~l~~~~~-- 203 (343)
T TIGR03106 151 -----------------DLVRLGISVGDFVAFDPQPEFL--------ANGFIVSRHLDDKAGVAALLAALKAIVEHKV-- 203 (343)
T ss_pred -----------------HHHHcCCCCCCEEEECCccEEe--------cCCEEEEEecccHHhHHHHHHHHHHHHhcCC--
Confidence 5788999999999999876542 5678999999999999999999998863210
Q ss_pred CCCCceEEEEEEeccccCcccccccCCcchHHHHHHHHhcccccCCchhhhhhhccCceEEEEecCCCCCCCCCccccCC
Q 012182 276 SSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEH 355 (469)
Q Consensus 276 ~~~~~~~~~v~~dqEEVGsrga~gA~s~~~~dil~ri~~~~~~~~~~~~~~~~~~~~s~~IS~DvahA~~Pn~~~~~~~~ 355 (469)
......+++|++||||| +| ++..+.|++ ..+|++|++++ .|.
T Consensus 204 -~~~~~v~~~~t~qEEvG-~g---aa~~i~pd~------------------------a~~i~vd~~~~-~p~-------- 245 (343)
T TIGR03106 204 -PLPVDVHPLFTITEEVG-SG---ASHALPPDV------------------------AELVSVDNGTV-APG-------- 245 (343)
T ss_pred -CCCceEEEEEECCcccC-cc---chhcccHhh------------------------hccEEEEeccc-CCC--------
Confidence 13456889999999999 65 556666654 13499999997 332
Q ss_pred CCCcCCCCceEEEcCCCCcccCHHHHHHHHHHHHHCCCCEeEEEeecCCCCCCC-hHHHHhcCCCCcEEEechhhccccc
Q 012182 356 HRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGST-IGPILASGVGIRTVDCGIAQLSMHS 434 (469)
Q Consensus 356 ~~~~LG~GpvIk~~~~~~y~t~~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgT-ig~i~~s~~Gi~tidIGiP~r~MHS 434 (469)
...||+||+|+.++++ +..|+.+.++|+++|+++|||||+.+. ++||| .+.++.++.||||+.||+|+|||||
T Consensus 246 -~~~lg~Gp~i~~~d~~-~~~~~~l~~~l~~~A~~~~Ip~Q~~~~----~~~gtDa~~~~~~~~Gi~t~~i~iP~Ry~Hs 319 (343)
T TIGR03106 246 -QNSSEHGVTIAMADSS-GPFDYHLTRKLIRLCQDHGIPHRRDVF----RYYRSDAASAVEAGHDIRTALVTFGLDASHG 319 (343)
T ss_pred -CCcCCCCceEEEecCC-CCCCHHHHHHHHHHHHHcCCCcEEEec----CCCCChHHHHHHcCCCCCEEEeeccccchhh
Confidence 2679999999988775 788999999999999999999999875 44566 7899999999999999999999999
Q ss_pred hhhhcCHHHHHHHHHHHHHHHhh
Q 012182 435 VREICGTEDIDIAYRHFKAFYES 457 (469)
Q Consensus 435 ~~E~~~~~Dv~~~~~ll~af~~~ 457 (469)
+|+++++|++++++|+.+|+.+
T Consensus 320 -~e~~~~~D~~~~~~Ll~~~~~~ 341 (343)
T TIGR03106 320 -YERTHIDALEALANLLVAYAQS 341 (343)
T ss_pred -hhhccHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999843
No 13
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=98.48 E-value=1.8e-06 Score=79.92 Aligned_cols=159 Identities=16% Similarity=0.154 Sum_probs=108.9
Q ss_pred Cceeeeccc-cchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcc-cccccCCcchHHHHHHHHhcccccCC
Q 012182 244 NEFIFSGRL-DNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSD-SYQGAGAPTMFQAIRRIVGSLAHEHV 321 (469)
Q Consensus 244 ~e~I~~~~l-Dnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsr-ga~gA~s~~~~dil~ri~~~~~~~~~ 321 (469)
++.+.|++- |+..++.+.+.+++.+.+.. ......+.++++..||+|+. |+.- ++..
T Consensus 26 ~~~~~grG~~D~k~~~~~~l~a~~~l~~~~---~~~~~~i~~~~~~~EE~g~~~g~~~------------l~~~------ 84 (189)
T PF01546_consen 26 DGRLYGRGADDMKGGIAAMLAALKALKESG---DDLPGNIIFLFTPDEEIGSIGGAKH------------LLEE------ 84 (189)
T ss_dssp TTEEESTTTTTTHHHHHHHHHHHHHHHHTT---TTCSSEEEEEEESTCCGTSTTHHHH------------HHHH------
T ss_pred CCEEEcCCcCCCcccHHHHHHHHHHHHhcc---ccccccccccccccccCCCcchhhh------------hhhh------
Confidence 456767666 77888999888888774211 12455678999999999998 4431 1110
Q ss_pred chhhhhhhccCceEEEEecCCCCCCCCCccccCCCCCcCCCCceEEEcCCCCcccCHHHHHHHHHHHHHCCC-CEeEEEe
Q 012182 322 SETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNL-PTQEFVV 400 (469)
Q Consensus 322 ~~~~~~~~~~~s~~IS~DvahA~~Pn~~~~~~~~~~~~LG~GpvIk~~~~~~y~t~~~~~~~l~~ia~~~~I-p~Q~~v~ 400 (469)
.....+..++++..|.+.... . + ...++.+...+++.+++.+. +......
T Consensus 85 ---~~~~~~~~~~~~~~e~~~~~~--------------~--~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (189)
T PF01546_consen 85 ---GAFFGLHPDYVIIGEPTGKGG--------------V--G----------SDNDPPLVQALQAAAQEVGGEPPEPVAS 135 (189)
T ss_dssp ---CEEEEEEESEEEECECETTSE--------------E--E----------HCTCHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred ---ccccccccccccccccccccc--------------c--c----------ccccHHHHHHHHHHHHHHhhccccccce
Confidence 001112344444444222210 0 0 23577799999999999987 5555443
Q ss_pred ecCCCCCCChHHHHhc--CCCCcEEEechhhccccchhhhcCHHHHHHHHHHHHHHHhh
Q 012182 401 RNDMGCGSTIGPILAS--GVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYES 457 (469)
Q Consensus 401 r~D~~gGgTig~i~~s--~~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll~af~~~ 457 (469)
+|+|.++++.. ..|+|++-+|.---.+|++.|-+..+|+...++++..++++
T Consensus 136 -----~g~tD~~~~~~~~~~~~~~i~~G~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~n 189 (189)
T PF01546_consen 136 -----GGGTDAGFLAEVKGLGIPAIGFGPGGSNAHTPDEYIDIEDLVKGAKIYAALLEN 189 (189)
T ss_dssp -----SSSSTHHHHHCHHHTTEEEEEEESCEESTTSTT-EEEHHHHHHHHHHHHHHHHT
T ss_pred -----eccccchhhhhhhccccceeeeCCCCCCCCCCCcEecHHHHHHHHHHHHHHHhC
Confidence 57776666665 58999999998889999999999999999999999999875
No 14
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=98.33 E-value=1.5e-05 Score=81.97 Aligned_cols=74 Identities=23% Similarity=0.235 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHHCCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhhccccchhhhcCHHHHHHHHHHHHHHHh
Q 012182 377 SGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYE 456 (469)
Q Consensus 377 ~~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll~af~~ 456 (469)
|..+...+++.+++.|++++... .+|+|++.+... .|||++.+|++...+||+.|.++++|+...++++..+++
T Consensus 288 ~~~lv~~l~~a~~~~g~~~~~~~-----~~g~tD~~~~~~-~giP~v~~G~g~~~~Hs~~E~v~i~~~~~~~~~~~~~~~ 361 (361)
T TIGR01883 288 QHPLMNIFKKAAKKIGLKTSEIF-----SGGGSDANVLNE-KGVPTVNLSAGYVHAHTEKETISIEQLVKLAELVIALAE 361 (361)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEe-----cCcccHHHHHhh-CCCceEEECCCcccCcCcceeEEHHHHHHHHHHHHHHhC
Confidence 55778888888888888877532 367887777764 699999999999999999999999999999999998763
No 15
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=97.41 E-value=0.0026 Score=65.26 Aligned_cols=76 Identities=14% Similarity=0.102 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHCCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhhcc-ccchhhhcCHHHHHHHHHHHHHHHh
Q 012182 378 GVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLS-MHSVREICGTEDIDIAYRHFKAFYE 456 (469)
Q Consensus 378 ~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~r~-MHS~~E~~~~~Dv~~~~~ll~af~~ 456 (469)
..+...+.+.+++.|.+.+... .+|+|.+.++.. .|+|++..|.-... +|++.|-++.+|+..+++++..++.
T Consensus 267 ~~lv~~l~~a~~~~g~~~~~~~-----~~g~tD~~~~~~-~~~~~v~fGpg~~~~aH~~nE~i~i~~l~~~~~~~~~~i~ 340 (346)
T PRK00466 267 NPVVKALMRALLKQNIKPRLVR-----KAGTSDMNILQK-ITTSIATYGPGNSMLEHTNQEKITLDEIYIAVKTYMLAIE 340 (346)
T ss_pred CHHHHHHHHHHHHhCCCceEEe-----cCCcCcHHHHHH-hCCCEEEECCCCcccccCCCceeeHHHHHHHHHHHHHHHH
Confidence 4556666666666677655432 357777766654 67899999965544 8999999999999999999999987
Q ss_pred hcc
Q 012182 457 SFS 459 (469)
Q Consensus 457 ~~~ 459 (469)
.|-
T Consensus 341 ~l~ 343 (346)
T PRK00466 341 ELW 343 (346)
T ss_pred HHH
Confidence 663
No 16
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=97.26 E-value=0.006 Score=65.69 Aligned_cols=78 Identities=12% Similarity=0.071 Sum_probs=60.1
Q ss_pred cCHHHHHHHHHHHHH-CCCCEeEEEeecCCCCCCChHHHHhcC-CCCcEEEechhhccccchhhhcCHHHHHHHHHHHHH
Q 012182 376 TSGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASG-VGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKA 453 (469)
Q Consensus 376 t~~~~~~~l~~ia~~-~~Ip~Q~~v~r~D~~gGgTig~i~~s~-~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll~a 453 (469)
.|..+...+.+.+++ .|.+...... +|||.+.+.+.. .|+|++.+|.+.-.+|++.|-++++|+...++++..
T Consensus 397 ~d~plv~~l~~a~~~~~g~~~~~~~~-----~Ggtd~~~~~~~~~~i~~v~~Gp~~~~~H~~nE~i~i~~l~~~~~~~~~ 471 (477)
T TIGR01893 397 PQSNLLDTARKVYSEMFGEDPEVKVI-----HAGLECGIISSKIPDIDMISIGPNIYDPHSPNERVSISSVEKVWDFLVK 471 (477)
T ss_pred CCCHHHHHHHHHHHHHHCCCCeEEEe-----ecCccHHHHHhhCCCceEEEeCCCCCCCCCCCceeeHHHHHHHHHHHHH
Confidence 456667777776665 5777665442 455655555433 489999999999999999999999999999999999
Q ss_pred HHhhc
Q 012182 454 FYESF 458 (469)
Q Consensus 454 f~~~~ 458 (469)
++..+
T Consensus 472 ll~~~ 476 (477)
T TIGR01893 472 VLERL 476 (477)
T ss_pred HHHhc
Confidence 98765
No 17
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=97.03 E-value=0.00073 Score=70.02 Aligned_cols=47 Identities=17% Similarity=-0.088 Sum_probs=37.3
Q ss_pred eccccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccccc
Q 012182 249 SGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGA 300 (469)
Q Consensus 249 ~~~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~gA 300 (469)
=.+.||..||.++|++++.+.+. .....+.+++++.||+|+.|++--
T Consensus 139 ~GA~DnasGvA~lLe~ar~l~~~-----~~~~~I~fv~~~~EE~Gl~GS~~~ 185 (346)
T PRK10199 139 QGMDDNAAGLGVMLELAERLKNV-----PTEYGIRFVATSGEEEGKLGAENL 185 (346)
T ss_pred CCccccHHHHHHHHHHHHHHhhC-----CCCCcEEEEEECCcccCcHHHHHH
Confidence 35789999999999999887642 133457899999999999987743
No 18
>PRK13381 peptidase T; Provisional
Probab=96.97 E-value=0.002 Score=67.60 Aligned_cols=78 Identities=15% Similarity=0.037 Sum_probs=64.4
Q ss_pred cCHHHHHHHHHHHHHCCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhhccccchhhhcCHHHHHHHHHHHHHHH
Q 012182 376 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFY 455 (469)
Q Consensus 376 t~~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll~af~ 455 (469)
.|..+...+++.+++.|++.+... .+|+|.+.++.. .|||++.+|++...+|++.|.++++|++.+++++..++
T Consensus 326 ~~~~lv~~l~~a~~~~g~~~~~~~-----~~g~tDa~~~~~-~giP~v~~GpG~~~aH~~dE~v~i~~l~~~~~v~~~~~ 399 (404)
T PRK13381 326 DDRRAVDLAFDAMKELGIEPKVIP-----MRGGTDGAALSA-KGLPTPNLFTGAHNFHSRFEFLPVSSFVKSYEVTITIC 399 (404)
T ss_pred cCHHHHHHHHHHHHHcCCCeeecc-----CCccchHHHHhc-CCCCeEEECccccCCcCcceeEEHHHHHHHHHHHHHHH
Confidence 467777888888888888766432 257787766654 69999999999999999999999999999999999998
Q ss_pred hhcc
Q 012182 456 ESFS 459 (469)
Q Consensus 456 ~~~~ 459 (469)
..+.
T Consensus 400 ~~~~ 403 (404)
T PRK13381 400 LLAA 403 (404)
T ss_pred HHhc
Confidence 7664
No 19
>PRK05469 peptidase T; Provisional
Probab=96.90 E-value=0.0025 Score=67.01 Aligned_cols=79 Identities=15% Similarity=0.024 Sum_probs=65.0
Q ss_pred cCHHHHHHHHHHHHHCCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhhccccchhhhcCHHHHHHHHHHHHHHH
Q 012182 376 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFY 455 (469)
Q Consensus 376 t~~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll~af~ 455 (469)
.|..+.+.+++.+++.|++.+... .+|+|.+.+.+. .|||++.+|++...+|++.|.++.+|+...++++..++
T Consensus 328 ~~~~lv~~~~~a~~~~g~~~~~~~-----~~ggtD~~~~~~-~giP~v~~gpG~~~~H~~~E~v~i~~l~~~~~~~~~~~ 401 (408)
T PRK05469 328 PHPHIVDLAKQAMEDLGIEPIIKP-----IRGGTDGSQLSF-MGLPCPNIFTGGHNFHGKFEFVSLESMEKAVEVIVEIA 401 (408)
T ss_pred CCHHHHHHHHHHHHHcCCCcEEec-----CCCcccHHHHhh-CCCceEEECcCcccCcCcceeeEHHHHHHHHHHHHHHH
Confidence 456778888888888888766432 357787766654 79999999999989999999999999999999999998
Q ss_pred hhccc
Q 012182 456 ESFSS 460 (469)
Q Consensus 456 ~~~~~ 460 (469)
..|.+
T Consensus 402 ~~~~~ 406 (408)
T PRK05469 402 ELTAE 406 (408)
T ss_pred HHHhc
Confidence 87643
No 20
>PRK08554 peptidase; Reviewed
Probab=96.71 E-value=0.0039 Score=66.61 Aligned_cols=77 Identities=12% Similarity=0.138 Sum_probs=66.5
Q ss_pred cCHHHHHHHHHHHHHCCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhhccccchhhhcCHHHHHHHHHHHHHHH
Q 012182 376 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFY 455 (469)
Q Consensus 376 t~~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll~af~ 455 (469)
.+..+...+++++++.|++.+... .+|+|.+.+++. .|+|++++|+---.||++.|-+.++++..+++++..++
T Consensus 360 ~~~~lv~~~~~~~~~~g~~~~~~~-----~~GgtDa~~~~~-~Gip~v~~Gp~~~~~H~~~E~v~i~~l~~~~~i~~~~i 433 (438)
T PRK08554 360 PDEEIVKVALRVLKELGEDAEPVE-----GPGASDSRYFTP-YGVKAIDFGPKGGNIHGPNEYVEIDSLKKMPEVYKRIA 433 (438)
T ss_pred CChHHHHHHHHHHHHhCCCcEEEe-----cCCchHHHHHHh-cCCCceEECCCCCCCCCCcceEEHHHHHHHHHHHHHHH
Confidence 478888999999999999877654 368899888875 69999999996678999999999999999999999988
Q ss_pred hhc
Q 012182 456 ESF 458 (469)
Q Consensus 456 ~~~ 458 (469)
..|
T Consensus 434 ~~l 436 (438)
T PRK08554 434 LRL 436 (438)
T ss_pred HHH
Confidence 665
No 21
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=96.68 E-value=0.00066 Score=62.87 Aligned_cols=154 Identities=14% Similarity=0.009 Sum_probs=84.5
Q ss_pred eeeccccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccccCCcchHHHHHHHHhcccccCCchhhh
Q 012182 247 IFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIVGSLAHEHVSETSF 326 (469)
Q Consensus 247 I~~~~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~gA~s~~~~dil~ri~~~~~~~~~~~~~~ 326 (469)
+.-.+.||-.||.++||..+.+.+.. ......+.+++|+.||.|+.|++.-... .+..
T Consensus 20 ~~~GA~DnasGva~lLelAr~l~~~~---~~~~~~i~fv~~~~EE~gl~GS~~~~~~-~~~~------------------ 77 (179)
T PF04389_consen 20 WSPGANDNASGVAALLELARVLKELK---PQPKRTIRFVFFDGEEQGLLGSRAFVEH-DHEE------------------ 77 (179)
T ss_dssp SSS-TTTTHHHHHHHHHHHHHHHHST---HSSSEEEEEEEESSGGGTSHHHHHHHHH-HHCH------------------
T ss_pred ccCCcccchHHHHHHHHHHHHHHHhh---cccCccEEEEEecccccCccchHHHHHh-hhcc------------------
Confidence 56678999999999999888775421 1134567899999999999988743220 0000
Q ss_pred hhhccCceEEEEecCCCCCCCCCccccCCCCCcCCCCceEEEcCCCCcccCHHHHHHHHHHHHHCCCCEeEEEe-ecCCC
Q 012182 327 ECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVV-RNDMG 405 (469)
Q Consensus 327 ~~~~~~s~~IS~DvahA~~Pn~~~~~~~~~~~~LG~GpvIk~~~~~~y~t~~~~~~~l~~ia~~~~Ip~Q~~v~-r~D~~ 405 (469)
...--.+|..|+....+ +.+...... .....+.+.+.++++.....++.... .....
T Consensus 78 --~~~~~~~inlD~~g~~~------------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (179)
T PF04389_consen 78 --LDNIAAVINLDMIGSGD------------------PTVYSEGSP--SLPSRLEAYLSSFKQPYGSSLGPDVPPEKPTF 135 (179)
T ss_dssp --HHHEEEEEEECSSBSSS------------------SEEEEEEGG--GHHHHHHHHHHHHHHHHHCHTSSECEEEESST
T ss_pred --cccceeEEeccccccCc------------------ccceeeeec--cccchhhhhhhhhhhhhhcccccccccccCCC
Confidence 01123578888644322 111111111 00112445555554443222222221 11234
Q ss_pred CCCChHHHHhcCCCCcEEEechh---hccccchhhhcCHHHHHH
Q 012182 406 CGSTIGPILASGVGIRTVDCGIA---QLSMHSVREICGTEDIDI 446 (469)
Q Consensus 406 gGgTig~i~~s~~Gi~tidIGiP---~r~MHS~~E~~~~~Dv~~ 446 (469)
+++.-.++. ..|||++.+.-= ..+-|++.-+++.-|.+.
T Consensus 136 ~~sD~~~F~--~~gip~~~~~~~~~~~~~~Ht~~Dt~~~~~~~~ 177 (179)
T PF04389_consen 136 GGSDHYPFS--KAGIPAVTLSSTDGYNPYYHTPEDTPDNLDPDT 177 (179)
T ss_dssp TSSTCHHHH--TTT-EEEEEEESSSSGTTTTSTT-SGGGC-HHH
T ss_pred CCCCcHhhh--cCCEeEEEEEecCCCCCCCCCcccChhhcCCcc
Confidence 445566777 689999877543 366699888777766554
No 22
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=96.30 E-value=0.0097 Score=62.84 Aligned_cols=78 Identities=12% Similarity=-0.070 Sum_probs=63.7
Q ss_pred cCHHHHHHHHHHHHHCCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhhccc--cchhhhcCHHHHHHHHHHHHH
Q 012182 376 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSM--HSVREICGTEDIDIAYRHFKA 453 (469)
Q Consensus 376 t~~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~r~M--HS~~E~~~~~Dv~~~~~ll~a 453 (469)
.|..+...+++.+++.|++.+... .+|+|.+.+.. .|+|++.+..|...+ |++.|.++.+|+...++++..
T Consensus 331 ~d~~lv~~l~~a~~~~G~~~~~~~-----~~ggtDa~~~~--~giPt~~~~gp~~~~~aH~~dE~v~i~~l~~~~~il~~ 403 (414)
T PRK12891 331 FAPGCIDAVRDAARALGLSHMDIV-----SGAGHDACFAA--RGAPTGMIFVPCVDGLSHNEAEAITPEWFAAGADVLLR 403 (414)
T ss_pred CCHHHHHHHHHHHHHcCCCceecC-----CcchHHHHHHH--hhCCEEEEEEcCCCCCCCCccccCCHHHHHHHHHHHHH
Confidence 467888999999998999887532 35777766543 489998887788765 999999999999999999999
Q ss_pred HHhhccc
Q 012182 454 FYESFSS 460 (469)
Q Consensus 454 f~~~~~~ 460 (469)
++..+.+
T Consensus 404 ~l~~~~~ 410 (414)
T PRK12891 404 AVLQSAQ 410 (414)
T ss_pred HHHHHhh
Confidence 9988754
No 23
>PRK07473 carboxypeptidase; Provisional
Probab=96.22 E-value=0.0068 Score=63.28 Aligned_cols=74 Identities=18% Similarity=0.200 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHCCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEE-echhhccccchhhhcCHHHHHHHHHHHHHHHhh
Q 012182 379 VTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVD-CGIAQLSMHSVREICGTEDIDIAYRHFKAFYES 457 (469)
Q Consensus 379 ~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tid-IGiP~r~MHS~~E~~~~~Dv~~~~~ll~af~~~ 457 (469)
.+.+.+++.++..+++..... .+|+|.+.+.+. .|||+++ +|+---.+|++-|-++.+|+..+++++..++..
T Consensus 301 ~l~~~~~~~~~~~g~~~~~~~-----~~g~tDa~~~~~-~giP~v~g~Gpg~~~~H~~dE~v~i~~l~~~~~vl~~~l~~ 374 (376)
T PRK07473 301 ALYEKARAIAGQLGLSLPHGS-----AGGGSDGNFTGA-MGIPTLDGLGVRGADYHTLNEHIEVDSLAERGRLMAGLLAT 374 (376)
T ss_pred HHHHHHHHHHHHcCCCCcccc-----CccccHhhhHHh-cCCCEEEeccCCCCCCCCCCceEecccHHHHHHHHHHHHHh
Confidence 577888899999999877543 367788888775 6999998 988667799999999999999999999999865
Q ss_pred c
Q 012182 458 F 458 (469)
Q Consensus 458 ~ 458 (469)
+
T Consensus 375 ~ 375 (376)
T PRK07473 375 L 375 (376)
T ss_pred c
Confidence 4
No 24
>PRK07338 hypothetical protein; Provisional
Probab=96.22 E-value=0.009 Score=62.50 Aligned_cols=78 Identities=15% Similarity=0.055 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHHCCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEE-echhhccccchhhhcCHHHHHHHHHHHHHHH
Q 012182 377 SGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVD-CGIAQLSMHSVREICGTEDIDIAYRHFKAFY 455 (469)
Q Consensus 377 ~~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tid-IGiP~r~MHS~~E~~~~~Dv~~~~~ll~af~ 455 (469)
+..+.+.+++.+++.|++..... .+|+|.+.++.. .|||+++ +|.---.+|++.|-++++|+...++++..++
T Consensus 321 ~~~l~~~~~~~~~~~g~~~~~~~-----~~g~tDa~~~~~-~giP~v~~~Gpg~~~~H~~~E~v~i~~l~~~~~~~~~~l 394 (402)
T PRK07338 321 QQRLFEAVQACGAALGLTIDWKD-----SGGVCDGNNLAA-AGLPVVDTLGVRGGNIHSEDEFVILDSLVERAQLSALIL 394 (402)
T ss_pred hHHHHHHHHHHHHHcCCCccccc-----CCccchHHHHhh-cCCCeEeccCCCCCCCCCccceEehhhHHHHHHHHHHHH
Confidence 34688889999999998876432 367888777765 7999995 8886667899999999999999999999999
Q ss_pred hhccc
Q 012182 456 ESFSS 460 (469)
Q Consensus 456 ~~~~~ 460 (469)
..|.+
T Consensus 395 ~~~~~ 399 (402)
T PRK07338 395 MRLAQ 399 (402)
T ss_pred HHHhc
Confidence 88754
No 25
>PRK08652 acetylornithine deacetylase; Provisional
Probab=96.05 E-value=0.01 Score=60.38 Aligned_cols=78 Identities=19% Similarity=0.068 Sum_probs=62.5
Q ss_pred cCHHHHHHHHHHHHHCCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhh-ccccchhhhcCHHHHHHHHHHHHHH
Q 012182 376 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ-LSMHSVREICGTEDIDIAYRHFKAF 454 (469)
Q Consensus 376 t~~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~-r~MHS~~E~~~~~Dv~~~~~ll~af 454 (469)
.|..+.+.+++.+++.|++..... .+|+|.+..++. .|||++.+|.-. -.+|++.|-++++|+...++++..+
T Consensus 267 ~~~~lv~~l~~a~~~~g~~~~~~~-----~~g~tDa~~~~~-~gip~v~~Gpg~~~~~H~~nE~i~i~~l~~~~~~l~~~ 340 (347)
T PRK08652 267 EDEEIVQLLEKAMKEVGLEPEFTV-----MRSWTDAINFRY-NGTKTVVWGPGELDLCHTKFERIDVREVEKAKEFLKAL 340 (347)
T ss_pred CCCHHHHHHHHHHHHhCCCCCcCc-----CCccchhHHHHH-CCCCEEEECCCchhhcCCCCceeeHHHHHHHHHHHHHH
Confidence 367788889999988888765433 256787766654 799999999654 3689999999999999999999999
Q ss_pred Hhhcc
Q 012182 455 YESFS 459 (469)
Q Consensus 455 ~~~~~ 459 (469)
++.+-
T Consensus 341 ~~~~~ 345 (347)
T PRK08652 341 NEILL 345 (347)
T ss_pred HHHHh
Confidence 87653
No 26
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=95.99 E-value=0.016 Score=59.85 Aligned_cols=76 Identities=20% Similarity=0.316 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHH-CCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhhccccchhhhcCHHHHHHHHHHHHHHH
Q 012182 377 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFY 455 (469)
Q Consensus 377 ~~~~~~~l~~ia~~-~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll~af~ 455 (469)
|....+.+++.+++ .|++.+... .+|+|.+.++.. .|+|++.+|..-..+|++.|-++++|++.+++++..++
T Consensus 294 ~~~~~~~~~~a~~~~~g~~~~~~~-----~~g~~d~~~~~~-~g~p~~~~Gp~~~~~H~~~E~i~i~~l~~~~~~~~~~l 367 (370)
T TIGR01246 294 DGKLIDKAREAIEETNGIKPELST-----GGGTSDGRFIAL-MGAEVVEFGPVNATIHKVNECVSIEDLEKLSDVYQDLL 367 (370)
T ss_pred CCHHHHHHHHHHHHHhCCCCceec-----CCCCchHHHHHH-cCCCEEEecCCcccCCCCCceeEHHHHHHHHHHHHHHH
Confidence 44555666666654 577655432 367788877765 79999999999888999999999999999999999998
Q ss_pred hhc
Q 012182 456 ESF 458 (469)
Q Consensus 456 ~~~ 458 (469)
.+|
T Consensus 368 ~~~ 370 (370)
T TIGR01246 368 ENL 370 (370)
T ss_pred HhC
Confidence 754
No 27
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=95.90 E-value=0.012 Score=62.09 Aligned_cols=78 Identities=14% Similarity=0.003 Sum_probs=60.9
Q ss_pred cCHHHHHHHHHHHHHCCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhhccccchhhhcCHHHHHHHHHHHHHHH
Q 012182 376 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFY 455 (469)
Q Consensus 376 t~~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll~af~ 455 (469)
.|..+.+.+++.+++.|++..... ..|||.+.+++. .|+|++.+|.-.-.+|++.|.++++|++.+++++..++
T Consensus 330 ~~~~lv~~~~~a~~~~G~~~~~~~-----~~ggtDa~~~~~-~Gip~~~~G~G~~~aHt~dE~v~i~~l~~~~~~~~~li 403 (410)
T TIGR01882 330 KVMEIVDIAKQAMENLGIEPKISP-----IRGGTDGSQLSY-MGLPTPNIFAGGENMHGRFEYISVDNMVKAVDVIVEIA 403 (410)
T ss_pred CCHHHHHHHHHHHHHhCCCCcccc-----cceechHHHHHh-CCCCCCeEcCCcccCcCCceEEEHHHHHHHHHHHHHHH
Confidence 355666777777777666533211 257888888765 79999999997777999999999999999999999998
Q ss_pred hhcc
Q 012182 456 ESFS 459 (469)
Q Consensus 456 ~~~~ 459 (469)
+.+.
T Consensus 404 ~~~~ 407 (410)
T TIGR01882 404 KLNE 407 (410)
T ss_pred HHHh
Confidence 7653
No 28
>PRK06837 acetylornithine deacetylase; Provisional
Probab=95.74 E-value=0.021 Score=60.55 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHH-CCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhhccccchhhhcCHHHHHHHHHHHHHHH
Q 012182 377 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFY 455 (469)
Q Consensus 377 ~~~~~~~l~~ia~~-~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll~af~ 455 (469)
|..+...+++.+++ .|.+.+.... +|+|.+.+.....|+|++.+|..-..+|++.|-++++|+..+++++..++
T Consensus 344 ~~~~~~~~~~a~~~~~g~~~~~~~~-----~g~tDa~~~~~~~gip~v~~Gp~~~~~H~~nE~i~i~~l~~~~~~~~~~l 418 (427)
T PRK06837 344 GSEAEAALARAHAAVFGGPLRSFVT-----TAYTDTRFYGLYYGIPALCYGPSGEGIHGFDERVDLESVRKVTKTIALFV 418 (427)
T ss_pred CCHHHHHHHHHHHHHhCCCCeeeEE-----eeccchHHHhccCCCCEEEECCCCCccCCCCceEEHHHHHHHHHHHHHHH
Confidence 34667777777766 7888776542 57787777664479999999998878999999999999999999999999
Q ss_pred hhccc
Q 012182 456 ESFSS 460 (469)
Q Consensus 456 ~~~~~ 460 (469)
..+-.
T Consensus 419 ~~~~~ 423 (427)
T PRK06837 419 AEWCG 423 (427)
T ss_pred HHHhC
Confidence 77643
No 29
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=95.70 E-value=0.022 Score=58.21 Aligned_cols=79 Identities=14% Similarity=0.047 Sum_probs=63.4
Q ss_pred cCHHHHHHHHHHHHHCCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhhc-cccchhhhcCHHHHHHHHHHHHHH
Q 012182 376 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL-SMHSVREICGTEDIDIAYRHFKAF 454 (469)
Q Consensus 376 t~~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~r-~MHS~~E~~~~~Dv~~~~~ll~af 454 (469)
.+..+...+++.+++.+.+..... .+|+|.+.+++...|+|++.+|.-.. .+|++.|-++.+|++.+++++..+
T Consensus 255 ~~~~lv~~~~~a~~~~~~~~~~~~-----~~g~tD~~~~~~~~g~p~v~~Gpg~~~~aH~~nE~v~i~~l~~~~~~~~~~ 329 (336)
T TIGR01902 255 RNNPLVRAFVRAIRKQGMKPRLKK-----KTGTSDMNILAPIWTVPMVAYGPGDSTLDHTPQEKISLAEYLIGIKTLMLA 329 (336)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEee-----ccccCccceeccccCCCeEEECCCCcccCCCCcceeEHHHHHHHHHHHHHH
Confidence 456788889998988877655433 24678777776556999999997754 489999999999999999999999
Q ss_pred Hhhcc
Q 012182 455 YESFS 459 (469)
Q Consensus 455 ~~~~~ 459 (469)
+..+.
T Consensus 330 l~~l~ 334 (336)
T TIGR01902 330 IEELW 334 (336)
T ss_pred HHHHh
Confidence 98764
No 30
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=95.54 E-value=0.034 Score=57.76 Aligned_cols=75 Identities=13% Similarity=0.057 Sum_probs=61.3
Q ss_pred cCHHHHHHHHHHHHH-CCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhhccccchhhhcCHHHHHHHHHHHHHH
Q 012182 376 TSGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAF 454 (469)
Q Consensus 376 t~~~~~~~l~~ia~~-~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll~af 454 (469)
.|..+.+.+.+.+++ .|.+.+... .+|+|.+.++.. .|||++.+|..--.+|++.|-+.++|++.+++++..+
T Consensus 323 ~~~~~v~~l~~a~~~~~g~~~~~~~-----~~g~td~~~~~~-~gip~v~~Gp~~~~~H~~nE~v~i~~l~~~~~~~~~~ 396 (400)
T PRK13983 323 PDSEIVKKLKRAIKEVRGIEPKVGG-----IGGGTVAAFLRK-KGYPAVVWSTLDETAHQPNEYAKISNLIEDAKVFALL 396 (400)
T ss_pred CCcHHHHHHHHHHHHhcCCCceeee-----ecCcHHHHHHHH-cCCCEEEeCCccccCCCCCceeeHHHHHHHHHHHHHH
Confidence 456677777777766 678777644 257788877764 7999999999888899999999999999999999988
Q ss_pred Hh
Q 012182 455 YE 456 (469)
Q Consensus 455 ~~ 456 (469)
+.
T Consensus 397 ~~ 398 (400)
T PRK13983 397 LL 398 (400)
T ss_pred Hh
Confidence 74
No 31
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=95.54 E-value=0.035 Score=58.06 Aligned_cols=78 Identities=14% Similarity=0.117 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHCCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhh---ccccchhhhcCHHHHHHHHHHHHH
Q 012182 377 SGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ---LSMHSVREICGTEDIDIAYRHFKA 453 (469)
Q Consensus 377 ~~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~---r~MHS~~E~~~~~Dv~~~~~ll~a 453 (469)
+..+...+++.+++.+.+.+... .+|+|.+.+... .|||++.+|.-- ...|++.|-++++|+..+++++..
T Consensus 319 ~~~lv~~l~~a~~~~~~~~~~~~-----~~g~tDa~~~~~-~gip~v~fgp~~~~~~~aH~~dE~i~i~~l~~~~~~~~~ 392 (400)
T TIGR01880 319 SNPWWVAFKDAVKEMGCTFKPEI-----LPGSTDSRYIRA-AGVPALGFSPMNNTPVLLHDHNEFLNEAVFLRGIEIYQT 392 (400)
T ss_pred CCHHHHHHHHHHHHcCCeeccee-----ecCcchHHHHHh-CCCCeEEECCccCCcccccCCCCceEHHHHHHHHHHHHH
Confidence 44566778888888776554422 357788888764 799998877632 248999999999999999999999
Q ss_pred HHhhccc
Q 012182 454 FYESFSS 460 (469)
Q Consensus 454 f~~~~~~ 460 (469)
++..+..
T Consensus 393 ~l~~~~~ 399 (400)
T TIGR01880 393 LISALAS 399 (400)
T ss_pred HHHHhhc
Confidence 9987754
No 32
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=95.41 E-value=0.04 Score=58.02 Aligned_cols=78 Identities=12% Similarity=0.066 Sum_probs=61.0
Q ss_pred ccCHHHHHHHHHHHHHCCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhhcc--ccchhhhcCHHHHHHHHHHHH
Q 012182 375 ATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLS--MHSVREICGTEDIDIAYRHFK 452 (469)
Q Consensus 375 ~t~~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~r~--MHS~~E~~~~~Dv~~~~~ll~ 452 (469)
..|+.+...+.+.+++.|++.+... .+|+|.+.+... .| |++.+..|... +|++.|.++.+|+..+++++.
T Consensus 332 ~~~~~l~~~l~~~~~~~g~~~~~~~-----~~g~tDa~~~~~-~g-p~~~~~gp~~~~~aHs~dE~v~i~~l~~~~~i~~ 404 (414)
T PRK12890 332 PCDPALVDAVEAAAARLGYPSRRMP-----SGAGHDAAAIAR-IG-PSAMIFVPCRGGISHNPEEAMDPEDLAAGARVLL 404 (414)
T ss_pred CCCHHHHHHHHHHHHHcCCCceecC-----CcccHHHHHHHh-hC-CEEEEEecCCCCCCCCcCccCCHHHHHHHHHHHH
Confidence 3577888999999998898876432 357787777664 56 66656666543 899999999999999999999
Q ss_pred HHHhhcc
Q 012182 453 AFYESFS 459 (469)
Q Consensus 453 af~~~~~ 459 (469)
.++..|.
T Consensus 405 ~ll~~l~ 411 (414)
T PRK12890 405 DAVLRLD 411 (414)
T ss_pred HHHHHHh
Confidence 9998774
No 33
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=95.37 E-value=0.042 Score=57.92 Aligned_cols=77 Identities=14% Similarity=0.050 Sum_probs=61.2
Q ss_pred cCHHHHHHHHHHHHHCCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhhcc--ccchhhhcCHHHHHHHHHHHHH
Q 012182 376 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLS--MHSVREICGTEDIDIAYRHFKA 453 (469)
Q Consensus 376 t~~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~r~--MHS~~E~~~~~Dv~~~~~ll~a 453 (469)
.|..+.+.+++.+++.+.+.+... .+|+|.+.+.. .|+|++.++.|... +|++.|.++.+++..+++++..
T Consensus 332 ~d~~lv~~l~~a~~~~g~~~~~~~-----~~g~tDa~~~~--~~iP~~~~~gp~~~~~~H~~dE~v~i~~l~~~~~v~~~ 404 (413)
T PRK09290 332 FDPGLVAALEEAAERLGLSYRRLP-----SGAGHDAQILA--AVVPTAMIFVPSVGGISHNPAEFTSPEDCAAGANVLLH 404 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCccccC-----CccchHHHHHh--ccCCEEEEEeccCCCCCCCccccCCHHHHHHHHHHHHH
Confidence 467788999999988887755322 35778766664 47999887778654 8999999999999999999999
Q ss_pred HHhhcc
Q 012182 454 FYESFS 459 (469)
Q Consensus 454 f~~~~~ 459 (469)
++..+-
T Consensus 405 ~l~~l~ 410 (413)
T PRK09290 405 ALLELA 410 (413)
T ss_pred HHHHHh
Confidence 987764
No 34
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=95.06 E-value=0.054 Score=55.70 Aligned_cols=77 Identities=14% Similarity=0.016 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHCCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhhc-cccchhhhcCHHHHHHHHHHHHHHH
Q 012182 377 SGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL-SMHSVREICGTEDIDIAYRHFKAFY 455 (469)
Q Consensus 377 ~~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~r-~MHS~~E~~~~~Dv~~~~~ll~af~ 455 (469)
+..+.+.+++..++.+.+..... .+|+|.+.+.....|+|++.+|+... .+|++.|-+.++|+..+++++..++
T Consensus 271 ~~~~~~~l~~~~~~~~~~~~~~~-----~~g~tD~~~~~~~~gip~v~~Gpg~~~~~H~~dE~i~i~~l~~~~~~~~~~~ 345 (348)
T PRK04443 271 RTPLARAFRVAIREAGGTPRLKR-----KTGTSDMNVVAPAWGCPMVAYGPGDSDLDHTPDEHLPLAEYLRAIAVLTDVL 345 (348)
T ss_pred CCHHHHHHHHHHHHhcCCcceec-----cccCCcHHHHhhhcCCCEEEECCCCccccCCCcccccHHHHHHHHHHHHHHH
Confidence 44567778887777654322111 35777666665447999999998754 4799999999999999999999998
Q ss_pred hhc
Q 012182 456 ESF 458 (469)
Q Consensus 456 ~~~ 458 (469)
..+
T Consensus 346 ~~l 348 (348)
T PRK04443 346 ERL 348 (348)
T ss_pred hhC
Confidence 654
No 35
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=95.00 E-value=0.1 Score=55.55 Aligned_cols=94 Identities=16% Similarity=0.174 Sum_probs=70.6
Q ss_pred CC--CCceEEEc---CCCCcccCHHHHHHHHHHHHHCCCCEeEEEeecCCCCCCChHHHHh-cCCCCcEEEechhhcccc
Q 012182 360 MQ--KGLVIKHN---ANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILA-SGVGIRTVDCGIAQLSMH 433 (469)
Q Consensus 360 LG--~GpvIk~~---~~~~y~t~~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~-s~~Gi~tidIGiP~r~MH 433 (469)
+| .|+-+... ....+-.+..++...++..++.+|.-.+.++| |||.|..++ -+..+|.+.+|. ...+|
T Consensus 313 ~g~~~~~~~~~~~~Yp~~~~~~~~~iv~~a~~a~~~l~~~p~v~~i~-----gGtd~~~is~~g~p~~~i~~Gp-~~n~H 386 (414)
T COG2195 313 LGKLAGAELEVKDSYPGWKIKPDSPLVDLAKKAYKELGIKPKVKPIH-----GGTDGGVLSFKGLPTPNISTGP-GENPH 386 (414)
T ss_pred hhhccceEEEEeccccCcCCCCCchHHHHHHHHHHHhCCCceEEEee-----cccchhhhhccCCCCceEeccc-ccCCC
Confidence 55 55555542 23445667888999999999999996666653 666555444 445555666666 99999
Q ss_pred chhhhcCHHHHHHHHHHHHHHHhhcc
Q 012182 434 SVREICGTEDIDIAYRHFKAFYESFS 459 (469)
Q Consensus 434 S~~E~~~~~Dv~~~~~ll~af~~~~~ 459 (469)
|+.|.+++..++.+++++.+.++.+.
T Consensus 387 s~~E~v~I~s~ek~~~~l~~l~~~~~ 412 (414)
T COG2195 387 SPDEFVSIESMEKAVQVLVELLKLAA 412 (414)
T ss_pred CccceeehHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999988764
No 36
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=94.94 E-value=0.057 Score=56.20 Aligned_cols=76 Identities=16% Similarity=0.222 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHH-CCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhh-ccccchhhhcCHHHHHHHHHHHHHHH
Q 012182 378 GVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ-LSMHSVREICGTEDIDIAYRHFKAFY 455 (469)
Q Consensus 378 ~~~~~~l~~ia~~-~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~-r~MHS~~E~~~~~Dv~~~~~ll~af~ 455 (469)
..+.+.+++.+++ .|++..... .+|+|.+.++. +.|||++.+|.-. .-+|++.|-++.+++...++++..++
T Consensus 314 ~~l~~~~~~a~~~~~g~~~~~~~-----~~g~tD~~~~~-~~gip~v~~Gpg~~~~~H~~~E~i~~~~l~~~~~i~~~~i 387 (394)
T PRK08651 314 SELVKALREAIREVLGVEPKKTI-----SLGGTDARFFG-AKGIPTVVYGPGELELAHAPDEYVEVKDVEKAAKVYEEVL 387 (394)
T ss_pred CHHHHHHHHHHHHHhCCCCceee-----ecCcccHHHHh-hCCCcEEEECCCChHhcCCCCceeEHHHHHHHHHHHHHHH
Confidence 3567777777776 677655432 25778777766 4799999888865 36999999999999999999999999
Q ss_pred hhcc
Q 012182 456 ESFS 459 (469)
Q Consensus 456 ~~~~ 459 (469)
..+.
T Consensus 388 ~~l~ 391 (394)
T PRK08651 388 KRLA 391 (394)
T ss_pred HHhh
Confidence 8764
No 37
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=94.83 E-value=0.073 Score=54.93 Aligned_cols=75 Identities=16% Similarity=0.250 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHH-CCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhhccccchhhhcCHHHHHHHHHHHHHHHh
Q 012182 378 GVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYE 456 (469)
Q Consensus 378 ~~~~~~l~~ia~~-~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll~af~~ 456 (469)
..+.+.+++.+++ .|.+.+... .+|+|.+.++.. .|+|++.+|.--...|++.|-++.+|+...++++..++.
T Consensus 298 ~~~~~~l~~a~~~~~g~~~~~~~-----~~g~tda~~~~~-~g~p~v~~Gp~~~~~H~~~E~i~~~~l~~~~~~~~~~~~ 371 (375)
T PRK13009 298 GKLVDAVVAAIEAVTGITPELST-----SGGTSDARFIAD-YGAQVVEFGPVNATIHKVNECVSVADLEKLTRIYERILE 371 (375)
T ss_pred cHHHHHHHHHHHHHhCCCceeec-----cCCCccHHHHHH-cCCCeEEeccCcccCCCCCCcEEHHHHHHHHHHHHHHHH
Confidence 3455666666654 677665543 367788877765 799999999876679999999999999999999999987
Q ss_pred hc
Q 012182 457 SF 458 (469)
Q Consensus 457 ~~ 458 (469)
.|
T Consensus 372 ~~ 373 (375)
T PRK13009 372 RL 373 (375)
T ss_pred HH
Confidence 65
No 38
>PRK06915 acetylornithine deacetylase; Validated
Probab=94.47 E-value=0.087 Score=55.51 Aligned_cols=81 Identities=11% Similarity=-0.014 Sum_probs=62.5
Q ss_pred cCHHHHHHHHHHHHH-CCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhh-ccccchhhhcCHHHHHHHHHHHHH
Q 012182 376 TSGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ-LSMHSVREICGTEDIDIAYRHFKA 453 (469)
Q Consensus 376 t~~~~~~~l~~ia~~-~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~-r~MHS~~E~~~~~Dv~~~~~ll~a 453 (469)
.|..+...+++.+++ .|.+..... .+|+|.+.+.....|+|++.+|+.. -..|++.|-++.+|+..+++++..
T Consensus 338 ~d~~lv~~l~~a~~~~~G~~~~~~~-----~~g~tD~~~~~~~~giP~v~fGpg~~~~aH~~dE~v~~~~l~~~~~~~~~ 412 (422)
T PRK06915 338 ENHPLMTTLEHNFVEIEGNKPIIEA-----SPWGTDGGLLTQIAGVPTIVFGPGETKVAHYPNEYIEVDKMIAAAKIIAL 412 (422)
T ss_pred CCCHHHHHHHHHHHHHhCCCCeece-----eeeeccHHHHhccCCCCEEEECCCCccccCCCCceeEHHHHHHHHHHHHH
Confidence 466778888888887 477655432 2567777766653499999999864 458999999999999999999999
Q ss_pred HHhhcccc
Q 012182 454 FYESFSSI 461 (469)
Q Consensus 454 f~~~~~~~ 461 (469)
++.++-.+
T Consensus 413 ll~~~~~~ 420 (422)
T PRK06915 413 TLLDWCEV 420 (422)
T ss_pred HHHHHhCC
Confidence 99776543
No 39
>PRK13004 peptidase; Reviewed
Probab=94.12 E-value=0.058 Score=56.52 Aligned_cols=78 Identities=21% Similarity=0.021 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHHC-CCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhhc-cccchhhhcCHHHHHHHHHHHHHH
Q 012182 377 SGVTAFLFKEIAKLH-NLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL-SMHSVREICGTEDIDIAYRHFKAF 454 (469)
Q Consensus 377 ~~~~~~~l~~ia~~~-~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~r-~MHS~~E~~~~~Dv~~~~~ll~af 454 (469)
+..+...+++.+++. |.+..... ..++|.|.......|+|++.+|+-.. .+|++.|-+.++|+...++++..+
T Consensus 317 ~~~~~~~l~~a~~~~~g~~~~~~~-----~~~~td~~~~~~~~Gip~v~~Gpg~~~~aH~~nE~i~i~~l~~~~~~~~~~ 391 (399)
T PRK13004 317 DHEFVKAAVEAYKGLFGKAPEVDK-----WTFSTNGVSIAGRAGIPTIGFGPGKEPLAHAPNEYTWKEQLVKAAAMYAAI 391 (399)
T ss_pred CCHHHHHHHHHHHHHhCCCCeecc-----cccccCCeEEehhcCCCEEEECCCcccccCCCCceeEHHHHHHHHHHHHHH
Confidence 456677777777765 77554321 23455443444448999999997554 499999999999999999999999
Q ss_pred Hhhcc
Q 012182 455 YESFS 459 (469)
Q Consensus 455 ~~~~~ 459 (469)
+..|-
T Consensus 392 ~~~~~ 396 (399)
T PRK13004 392 PKSLL 396 (399)
T ss_pred HHHHh
Confidence 87663
No 40
>PRK08596 acetylornithine deacetylase; Validated
Probab=94.09 E-value=0.13 Score=54.52 Aligned_cols=80 Identities=18% Similarity=0.073 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHH-CCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhh-ccccchhhhcCHHHHHHHHHHHHHH
Q 012182 377 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ-LSMHSVREICGTEDIDIAYRHFKAF 454 (469)
Q Consensus 377 ~~~~~~~l~~ia~~-~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~-r~MHS~~E~~~~~Dv~~~~~ll~af 454 (469)
+..+...+++.+++ .|.+..... .+|+|.+.++.. .|||++.+|.-- -.+|++.|-+.++|++.+++++.++
T Consensus 338 ~~~~v~~l~~a~~~~~g~~~~~~~-----~~g~tD~~~~~~-~gip~v~~Gpg~~~~~H~~~E~v~i~~~~~~~~~~~~~ 411 (421)
T PRK08596 338 EHPAVKTLSSAHESVLSKNAILDM-----STTVTDGGWFAE-FGIPAVIYGPGTLEEAHSVNEKVEIEQLIEYTKVITAF 411 (421)
T ss_pred CchHHHHHHHHHHHHhCCCCeeeE-----Eeeecchhhhhh-cCCCEEEECCCcccccCCCCceEEHHHHHHHHHHHHHH
Confidence 33444555554544 577764432 357777777765 899999999764 4589999999999999999999999
Q ss_pred Hhhccccc
Q 012182 455 YESFSSID 462 (469)
Q Consensus 455 ~~~~~~~~ 462 (469)
+..+-...
T Consensus 412 l~~~~~~~ 419 (421)
T PRK08596 412 IYEWCHTK 419 (421)
T ss_pred HHHHhCCC
Confidence 98775443
No 41
>PRK08737 acetylornithine deacetylase; Provisional
Probab=94.07 E-value=0.11 Score=54.22 Aligned_cols=70 Identities=11% Similarity=0.142 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHCCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhh-ccccchhhhcCHHHHHHHHHHHHHHHh
Q 012182 380 TAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ-LSMHSVREICGTEDIDIAYRHFKAFYE 456 (469)
Q Consensus 380 ~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~-r~MHS~~E~~~~~Dv~~~~~ll~af~~ 456 (469)
....+++++++.++|.-.. .+|+|.+.++.. .||||+..|.-- ..+|++.|-++++++..+++++..++.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~------~~~~tDa~~~~~-~Gip~v~~GpG~~~~aHt~dE~i~i~~l~~~~~~~~~~~~ 362 (364)
T PRK08737 292 RRLAARDVADALDLPIGNA------VDFWTEASLFSA-AGYTALVYGPGDIAQAHTADEFVTLDQLQRYAESVHRIIN 362 (364)
T ss_pred HHHHHHHHHhhhcCCCCce------eccccCHHHHHH-cCCCEEEECCCChhhccCCCcceeHHHHHHHHHHHHHHhc
Confidence 3345566777667765321 246788877764 799999999874 569999999999999999999998875
No 42
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=93.99 E-value=0.11 Score=56.31 Aligned_cols=80 Identities=13% Similarity=0.104 Sum_probs=60.7
Q ss_pred ccCHHHHHHHHHHHHH-CCCCEeEEEeecCCCCCCC-hHHHHhcCCCCcEEEechhhccccchhhhcCHHHHHHHHHHHH
Q 012182 375 ATSGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGST-IGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFK 452 (469)
Q Consensus 375 ~t~~~~~~~l~~ia~~-~~Ip~Q~~v~r~D~~gGgT-ig~i~~s~~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll~ 452 (469)
..|..+...+.++.++ .|-+-+.... .||+ .|-+....-|||+|.+|.-...||||.|-+++++++.+++++.
T Consensus 402 ~~ds~lv~~l~~~y~e~~G~~~~~~~i-----haglEcG~~~~~~p~i~~VsfGP~~~~~HspdE~v~I~s~~~~~~~l~ 476 (485)
T PRK15026 402 DANSPVMHLVRETYQRLFNKTPNIQII-----HAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGHYWTLLT 476 (485)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCeEEEE-----EEEehHHHHHhhCCCCCEEEECCCCCCCCCCCcEEEhHHHHHHHHHHH
Confidence 3455566666666665 3455554432 3455 5656555579999999999999999999999999999999999
Q ss_pred HHHhhcc
Q 012182 453 AFYESFS 459 (469)
Q Consensus 453 af~~~~~ 459 (469)
.|++++.
T Consensus 477 ~~l~~~~ 483 (485)
T PRK15026 477 ELLKEIP 483 (485)
T ss_pred HHHHhhh
Confidence 9999873
No 43
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=93.88 E-value=0.14 Score=53.05 Aligned_cols=77 Identities=16% Similarity=0.063 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHH-CCCCEeEEEeecCCCCCCChHHHHhc-CCCCcEEEechh-hccccchhhhcCHHHHHHHHHHHHH
Q 012182 377 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILAS-GVGIRTVDCGIA-QLSMHSVREICGTEDIDIAYRHFKA 453 (469)
Q Consensus 377 ~~~~~~~l~~ia~~-~~Ip~Q~~v~r~D~~gGgTig~i~~s-~~Gi~tidIGiP-~r~MHS~~E~~~~~Dv~~~~~ll~a 453 (469)
+..+.+.+++.+++ .|.+..... .+|+|.+..+.. ..|||++.+|.- ...+|++.|-++.+|+..+++++..
T Consensus 296 ~~~l~~~~~~~~~~~~g~~~~~~~-----~~g~tD~~~~~~~~~~ip~i~~Gpg~~~~~H~~~E~i~~~~l~~~~~~~~~ 370 (377)
T PRK08588 296 DSKLVQLAKDVAKSYVGQDIPLSA-----IPGATDASSFLKKKPDFPVIIFGPGNNLTAHQVDEYVEKDMYLKFIDIYKE 370 (377)
T ss_pred CCHHHHHHHHHHHHhhCCCCceec-----CCCcccHHHHhhhcCCCCEEEECCCCCccCCCCCceeEHHHHHHHHHHHHH
Confidence 34677788887776 676655332 356776655443 368999999976 5679999999999999999999999
Q ss_pred HHhhc
Q 012182 454 FYESF 458 (469)
Q Consensus 454 f~~~~ 458 (469)
++..+
T Consensus 371 ~~~~~ 375 (377)
T PRK08588 371 IIIQY 375 (377)
T ss_pred HHHHH
Confidence 98765
No 44
>PRK09133 hypothetical protein; Provisional
Probab=93.71 E-value=0.13 Score=55.12 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHHC--CCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEec---h-h-hccccchhhhcCHHHHHHHHH
Q 012182 377 SGVTAFLFKEIAKLH--NLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCG---I-A-QLSMHSVREICGTEDIDIAYR 449 (469)
Q Consensus 377 ~~~~~~~l~~ia~~~--~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIG---i-P-~r~MHS~~E~~~~~Dv~~~~~ 449 (469)
+..+.+.+++.+++. ++++.... .+|+|.+.++.. .|+|++.++ . + .-.+|++.|-++.+|+..+++
T Consensus 386 ~~~l~~~l~~~~~~~~~g~~~~~~~-----~~ggtDa~~~~~-~gip~~~~~~i~gp~~~~~aH~~dE~v~i~~l~~~~~ 459 (472)
T PRK09133 386 RPDIMKAVEKLTAAMWPGVPVIPSM-----STGATDGRYLRA-AGIPTYGVSGLFGDPDDTFAHGLNERIPVASFYEGRD 459 (472)
T ss_pred CcHHHHHHHHHHHHHCCCCceeccc-----cccccchHHHHh-cCCCceeecCcccCcccccCCCCCCceeHHHHHHHHH
Confidence 456777788887775 77765433 357788887764 799998632 1 2 245899999999999999999
Q ss_pred HHHHHHhhcc
Q 012182 450 HFKAFYESFS 459 (469)
Q Consensus 450 ll~af~~~~~ 459 (469)
++..++..+.
T Consensus 460 ~l~~~l~~l~ 469 (472)
T PRK09133 460 FLYELVKDLA 469 (472)
T ss_pred HHHHHHHHhh
Confidence 9999998763
No 45
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=93.43 E-value=0.19 Score=53.23 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=62.6
Q ss_pred cCHHHHHHHHHHHHHCCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhhc--cccchhhhcCHHHHHHHHHHHHH
Q 012182 376 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL--SMHSVREICGTEDIDIAYRHFKA 453 (469)
Q Consensus 376 t~~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~r--~MHS~~E~~~~~Dv~~~~~ll~a 453 (469)
.|..+...+++.|++.+.++... ..+|||.+.+.+. .+|++.+-.|.. .+|++.|.++.+|+...++++..
T Consensus 325 ~d~~lv~~l~~a~~~~~~~~~~~-----~sggg~Da~~~~~--~vP~~~ifgp~~~g~~H~p~E~v~~e~l~~g~~vl~~ 397 (406)
T TIGR03176 325 MNKEIVAIIEQLAKAEKLNYRLM-----HSGAGHDAQIFAP--RVPTAMIFVPSIGGISHNPAERTNIEDLVEGVKTLAD 397 (406)
T ss_pred CCHHHHHHHHHHHHHcCCCceec-----CcccHHHHHHHHH--HCCEEEEEEeCCCCCCCCccccCCHHHHHHHHHHHHH
Confidence 46788899999999988875532 2467888777765 389988877763 57999999999999999999999
Q ss_pred HHhhccc
Q 012182 454 FYESFSS 460 (469)
Q Consensus 454 f~~~~~~ 460 (469)
++..+..
T Consensus 398 ~l~~l~~ 404 (406)
T TIGR03176 398 MLYELAY 404 (406)
T ss_pred HHHHHhc
Confidence 9987643
No 46
>PRK07318 dipeptidase PepV; Reviewed
Probab=93.37 E-value=0.092 Score=56.39 Aligned_cols=75 Identities=16% Similarity=0.078 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHH-CCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhhc-cccchhhhcCHHHHHHHHHHHHHH
Q 012182 377 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL-SMHSVREICGTEDIDIAYRHFKAF 454 (469)
Q Consensus 377 ~~~~~~~l~~ia~~-~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~r-~MHS~~E~~~~~Dv~~~~~ll~af 454 (469)
+..+...+++.+++ .|.+.+... .+|+|.+.++. .||+.+.++++.. .+|++.|-++++|+..+++++..+
T Consensus 388 d~~lv~~l~~a~~~~~g~~~~~~~-----~~ggtDa~~~~--~~i~~Gp~~pg~~~~aH~~dE~v~i~~l~~~~~v~~~~ 460 (466)
T PRK07318 388 DDPLVKTLLKVYEKQTGLKGEEQV-----IGGGTYARLLK--RGVAFGAMFPGSEDTMHQANEYIEIDDLIKAAAIYAEA 460 (466)
T ss_pred CCHHHHHHHHHHHHHhCCCCCeeE-----EcchHhHhhCC--CeEEeCCCCCCCCCCCcCCCcceeHHHHHHHHHHHHHH
Confidence 55667777777775 677776543 25778877764 3777665555533 399999999999999999999999
Q ss_pred Hhhc
Q 012182 455 YESF 458 (469)
Q Consensus 455 ~~~~ 458 (469)
+..+
T Consensus 461 l~~~ 464 (466)
T PRK07318 461 IYEL 464 (466)
T ss_pred HHHH
Confidence 8765
No 47
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=93.35 E-value=0.18 Score=52.93 Aligned_cols=78 Identities=13% Similarity=-0.026 Sum_probs=57.0
Q ss_pred ccCHHHHHHHHHHHHHCCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechh-hccccchhhhcCHHHHHHHHHHHHH
Q 012182 375 ATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIA-QLSMHSVREICGTEDIDIAYRHFKA 453 (469)
Q Consensus 375 ~t~~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP-~r~MHS~~E~~~~~Dv~~~~~ll~a 453 (469)
..|+.+.+.+++.+++.+.+.+... .+|+|.+.+.+. .+.+++..|.. --.+|++.|.++.+|+..+++++..
T Consensus 330 ~~d~~l~~~l~~~~~~~g~~~~~~~-----~~g~tD~~~~~~-~~p~~v~~gp~~~~~~Hs~dE~v~i~~l~~~~~i~~~ 403 (412)
T PRK12893 330 PFDPALVALVEAAAEALGLSHMRMV-----SGAGHDAMFLAR-VAPAAMIFVPCRGGISHNEAEDTEPADLAAGANVLLH 403 (412)
T ss_pred CCCHHHHHHHHHHHHHcCCCccccC-----CccHHHHHHHHh-hCCEEEEEeecCCCCCCCccccCCHHHHHHHHHHHHH
Confidence 3467788899999888888765422 357787777664 34334554432 2347999999999999999999999
Q ss_pred HHhhc
Q 012182 454 FYESF 458 (469)
Q Consensus 454 f~~~~ 458 (469)
++..+
T Consensus 404 ll~~~ 408 (412)
T PRK12893 404 AVLEL 408 (412)
T ss_pred HHHHh
Confidence 98765
No 48
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=92.86 E-value=0.22 Score=52.21 Aligned_cols=76 Identities=11% Similarity=0.020 Sum_probs=58.3
Q ss_pred cCHHHHHHHHHHHHHCCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhhc--cccchhhhcCHHHHHHHHHHHHH
Q 012182 376 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL--SMHSVREICGTEDIDIAYRHFKA 453 (469)
Q Consensus 376 t~~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~r--~MHS~~E~~~~~Dv~~~~~ll~a 453 (469)
.|..+.+.+++.+++.|.+..... .+|+|.+.+... . +|++.+..|.- .+|++.|-++.+|+...++++..
T Consensus 332 ~d~~lv~~~~~a~~~~g~~~~~~~-----~~g~tDa~~~~~-~-ip~~~~~gp~~~~~~H~~~E~v~i~~l~~~~~il~~ 404 (412)
T PRK12892 332 CDAALVDALRAAAEAAGGPYLEMP-----SGAGHDAQNMAR-I-APSAMLFVPSKGGISHNPAEDTSPADLAQGARVLAD 404 (412)
T ss_pred CCHHHHHHHHHHHHHcCCCccccC-----cchHHHHHHHHh-H-CCEEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 467788899999998888765322 357787776664 3 88766555542 38999999999999999999999
Q ss_pred HHhhc
Q 012182 454 FYESF 458 (469)
Q Consensus 454 f~~~~ 458 (469)
++..+
T Consensus 405 ~l~~~ 409 (412)
T PRK12892 405 TLRRL 409 (412)
T ss_pred HHHHh
Confidence 98765
No 49
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=92.13 E-value=0.33 Score=50.98 Aligned_cols=77 Identities=12% Similarity=-0.038 Sum_probs=60.0
Q ss_pred ccCHHHHHHHHHHHHHCCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhhc-cccchhhhcCHHHHHHHHHHHHH
Q 012182 375 ATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL-SMHSVREICGTEDIDIAYRHFKA 453 (469)
Q Consensus 375 ~t~~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~r-~MHS~~E~~~~~Dv~~~~~ll~a 453 (469)
..|..+...+++.+++.+.+..... .+|+|.+.+.+. .|++++..|.... .+|++.|.++.+|+..+++++..
T Consensus 323 ~~d~~lv~~l~~a~~~~g~~~~~~~-----~~ggtDa~~~~~-~~~~~v~fgPg~~~~aH~~dE~v~~e~l~~~~~vl~~ 396 (401)
T TIGR01879 323 PCSEELVAALTELCERLGYNARVMV-----SGAGHDAQILAP-IVPIGMIFIPSINGISHNPAEWSNITDCAEGAKVLYL 396 (401)
T ss_pred CCCHHHHHHHHHHHHHcCCCccccc-----cchHHHHHHHHh-hCCEEEEEecCCCCCcCCCCccCCHHHHHHHHHHHHH
Confidence 3577888999999998888765432 357787777764 5888887766543 47999999999999999999998
Q ss_pred HHhh
Q 012182 454 FYES 457 (469)
Q Consensus 454 f~~~ 457 (469)
++..
T Consensus 397 ~i~~ 400 (401)
T TIGR01879 397 MVYQ 400 (401)
T ss_pred HHHh
Confidence 8754
No 50
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=92.06 E-value=0.26 Score=51.01 Aligned_cols=68 Identities=18% Similarity=0.222 Sum_probs=50.7
Q ss_pred cCHHHHHHHHHHHHH-CCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechh-hccccchhhhcCHHHHHHHHH
Q 012182 376 TSGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIA-QLSMHSVREICGTEDIDIAYR 449 (469)
Q Consensus 376 t~~~~~~~l~~ia~~-~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP-~r~MHS~~E~~~~~Dv~~~~~ 449 (469)
.+..+...+++.+++ .|.+..... .+|+|.+.+... .|||++.+|+- .-.+|++.|-++++|+..+++
T Consensus 305 ~~~~~~~~~~~~~~~~~g~~~~~~~-----~~g~tD~~~~~~-~gip~v~~Gpg~~~~~H~~~E~v~~~~~~~~~~ 374 (375)
T TIGR01910 305 PDSRLVKALEAIIKKVRGIEPEVLV-----STGGTDARFLRK-AGIPSIVYGPGDLETAHQVNEYISIKNLVESTK 374 (375)
T ss_pred CCCHHHHHHHHHHHHHhCCCCeEee-----eccchhHHHHHH-cCCcEEEECCCCccccCCCCceeEHHHHHHHhh
Confidence 355567777777765 466544322 357787777765 79999999976 467999999999999988765
No 51
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=92.06 E-value=0.32 Score=54.19 Aligned_cols=78 Identities=12% Similarity=0.092 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHHCCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhh--ccccchhhhcCHHHHHHHHHHHHHH
Q 012182 377 SGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ--LSMHSVREICGTEDIDIAYRHFKAF 454 (469)
Q Consensus 377 ~~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~--r~MHS~~E~~~~~Dv~~~~~ll~af 454 (469)
|+.+...+++.|++.|++++.. ..+|||.+.+.+. .|.+++..+.+- -..|++.|.++.+|+...++++..+
T Consensus 511 d~~lv~~~~~a~~~~G~~~~~~-----~sgag~Da~~~a~-~~p~amif~~~g~~g~sHsp~E~v~~edL~~g~~vl~~~ 584 (591)
T PRK13799 511 APELMKQLEAATDAAGVPLFEL-----ASGAGHDAMKIAE-IMDQAMLFTRCGNAGISHNPLESMTADDMELSADAFLDF 584 (591)
T ss_pred CHHHHHHHHHHHHHcCCCceec-----CcchHHHHHHHHh-hCCEEEEEEecCCCCCCCCccccCCHHHHHHHHHHHHHH
Confidence 3445555555555555554431 1357787777765 466655554432 2479999999999999999999999
Q ss_pred Hhhccc
Q 012182 455 YESFSS 460 (469)
Q Consensus 455 ~~~~~~ 460 (469)
+..+.+
T Consensus 585 l~~l~~ 590 (591)
T PRK13799 585 LNNFAE 590 (591)
T ss_pred HHHHhh
Confidence 987753
No 52
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=92.04 E-value=0.21 Score=52.28 Aligned_cols=77 Identities=18% Similarity=0.035 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHH-CCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhhcc-ccchhhhcCHHHHHHHHHHHHHH
Q 012182 377 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLS-MHSVREICGTEDIDIAYRHFKAF 454 (469)
Q Consensus 377 ~~~~~~~l~~ia~~-~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~r~-MHS~~E~~~~~Dv~~~~~ll~af 454 (469)
+..+...+.+++++ .+-+-.... .+++|.+.....+.|+|++.+|+-... +|++.|-++++|+..+++++..+
T Consensus 315 ~~~~v~~l~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~g~p~v~~Gpg~~~~aH~~nE~v~i~~l~~~~~~~~~~ 389 (395)
T TIGR03320 315 DHLITKAALETYKRLFGKEPGVDK-----WTFSTNGVSIMGRHGIPVIGFGPGDEDQAHAPNEKTWKEDLVRAAAMYAAI 389 (395)
T ss_pred CCHHHHHHHHHHHHHhCCCCceee-----cceecccceehhhcCCCEEEECCCchhhccCCCcEEEHHHHHHHHHHHHHH
Confidence 44555666666665 355543322 234454423333489999999977554 89999999999999999999999
Q ss_pred Hhhc
Q 012182 455 YESF 458 (469)
Q Consensus 455 ~~~~ 458 (469)
+..|
T Consensus 390 ~~~~ 393 (395)
T TIGR03320 390 PTVY 393 (395)
T ss_pred HHHh
Confidence 8765
No 53
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=91.98 E-value=0.41 Score=50.44 Aligned_cols=77 Identities=10% Similarity=0.029 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHH-CCCCEeEEEeecCCCCCCChHHHHhcCCC-C-cEEEechhh-ccccchhhhcCHHHHHHHHHHHHHH
Q 012182 379 VTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVG-I-RTVDCGIAQ-LSMHSVREICGTEDIDIAYRHFKAF 454 (469)
Q Consensus 379 ~~~~~l~~ia~~-~~Ip~Q~~v~r~D~~gGgTig~i~~s~~G-i-~tidIGiP~-r~MHS~~E~~~~~Dv~~~~~ll~af 454 (469)
.+...+.+.+++ .|.+.-... .+|+|.+.++.. .| + |++.+|.-. -.+|++.|-++.+|+..+++++..+
T Consensus 344 ~lv~~l~~a~~~~~g~~~~~~~-----~~g~~D~~~~~~-~g~~~~~v~fGPg~~~~aH~~nE~v~i~~l~~~~~~l~~~ 417 (427)
T PRK13013 344 PVVRSVAAAIERVLGRQADYVV-----SPGTYDQKHIDR-IGKLKNCIAYGPGILDLAHQPDEWVGIADMVDSAKVMALV 417 (427)
T ss_pred HHHHHHHHHHHHhhCCCCceee-----cCccCCHHHHHh-cCCCCCEEEECCCCccccCCCCceeEHHHHHHHHHHHHHH
Confidence 566666666665 677654332 356777777765 45 4 688888543 3489999999999999999999999
Q ss_pred Hhhcccc
Q 012182 455 YESFSSI 461 (469)
Q Consensus 455 ~~~~~~~ 461 (469)
+..+...
T Consensus 418 l~~~~~~ 424 (427)
T PRK13013 418 LADLLAG 424 (427)
T ss_pred HHHHhcc
Confidence 9887654
No 54
>PRK07906 hypothetical protein; Provisional
Probab=91.91 E-value=0.43 Score=50.38 Aligned_cols=77 Identities=14% Similarity=0.176 Sum_probs=57.0
Q ss_pred cCHHHHHHHHHHHHHCC--CCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhh--------ccccchhhhcCHHHHH
Q 012182 376 TSGVTAFLFKEIAKLHN--LPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ--------LSMHSVREICGTEDID 445 (469)
Q Consensus 376 t~~~~~~~l~~ia~~~~--Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~--------r~MHS~~E~~~~~Dv~ 445 (469)
.|..+...+++.+++.. ...-... .+|+|.+.++.. .|+|++.+|.-. -.+|++.|-+.++|+.
T Consensus 340 ~~~~~v~~l~~a~~~~~~~~~~~~~~-----~~ggtDa~~~~~-~g~p~~~~gp~~~~~~~~~~~~~H~~~E~v~~~~l~ 413 (426)
T PRK07906 340 FDGPLVDAMNAALLAEDPGARVVPYM-----LSGGTDAKAFSR-LGIRCYGFAPLRLPPDLDFAALFHGVDERVPVDALR 413 (426)
T ss_pred CCcHHHHHHHHHHHHHCCCCeEeeee-----ecccCcHHHHHh-cCCceEEEeccccCccccccccCcCCCCceeHHHHH
Confidence 35677788888888753 2111111 256788887774 799999887532 4699999999999999
Q ss_pred HHHHHHHHHHhhc
Q 012182 446 IAYRHFKAFYESF 458 (469)
Q Consensus 446 ~~~~ll~af~~~~ 458 (469)
..++++..++.++
T Consensus 414 ~~~~~~~~~l~~~ 426 (426)
T PRK07906 414 FGVRVLDRFLRTC 426 (426)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998753
No 55
>PRK06446 hypothetical protein; Provisional
Probab=91.72 E-value=0.32 Score=51.73 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=41.7
Q ss_pred CCCChHHHHhcCCCCcEEE--ech--hhccccchhhhcCHHHHHHHHHHHHHHHhhcc
Q 012182 406 CGSTIGPILASGVGIRTVD--CGI--AQLSMHSVREICGTEDIDIAYRHFKAFYESFS 459 (469)
Q Consensus 406 gGgTig~i~~s~~Gi~tid--IGi--P~r~MHS~~E~~~~~Dv~~~~~ll~af~~~~~ 459 (469)
+|+|.+.+.....|+|++. +|+ |--.+|++.|-+++++++.+++++..|+..+.
T Consensus 377 ~g~~d~~~~~~~~gip~v~~~~g~g~~~~~~H~~dE~i~i~~l~~~~~~~~~~~~~~~ 434 (436)
T PRK06446 377 AGTQPMGLFVYKLGIRDIVSAIGVGGYYSNAHAPNENIRIDDYYKAIKHTEEFLKLYS 434 (436)
T ss_pred CCcchHHHHHHHhCCCcceeecccCCCCcCCcCCCCCcCHHHHHHHHHHHHHHHHHhc
Confidence 4555544444448999875 433 46789999999999999999999999998764
No 56
>PRK07079 hypothetical protein; Provisional
Probab=91.03 E-value=0.55 Score=50.44 Aligned_cols=79 Identities=10% Similarity=-0.060 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHH-CCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEec--hhhccccchhhhcCHHHHHHHHHHHHHH
Q 012182 378 GVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCG--IAQLSMHSVREICGTEDIDIAYRHFKAF 454 (469)
Q Consensus 378 ~~~~~~l~~ia~~-~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIG--iP~r~MHS~~E~~~~~Dv~~~~~ll~af 454 (469)
..+...+.+.+++ .+.+.+.... .+|+|.+.+.....|||++.+| .|--.+|++.|-++++|+..+++++..+
T Consensus 375 ~~~v~~l~~a~~~~~g~~~~~~~~----~~g~~d~~~~~~~~giP~v~~g~~~~~~~~H~~dE~v~l~~l~~~~~~~~~~ 450 (469)
T PRK07079 375 DPWVRWALASIARTTGKKPALLPN----LGGSLPNDVFADILGLPTLWVPHSYPACSQHAPNEHLLASVAREGLQIMAGL 450 (469)
T ss_pred CHHHHHHHHHHHHHhCCCCceecC----CCcchhHHHHHHHhCCCEEEecCCCCCccCcCCCCCCCHHHHHHHHHHHHHH
Confidence 3344555444444 3554443321 2455555444444799999663 3333589999999999999999999999
Q ss_pred Hhhccc
Q 012182 455 YESFSS 460 (469)
Q Consensus 455 ~~~~~~ 460 (469)
+..+.+
T Consensus 451 ~~~~~~ 456 (469)
T PRK07079 451 FWDLGE 456 (469)
T ss_pred HHHHhc
Confidence 988754
No 57
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=91.00 E-value=0.39 Score=50.23 Aligned_cols=76 Identities=20% Similarity=0.074 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHH-CCCCEeEEEeecCCCCCCChH-HHHhcCCCCcEEEechhhc-cccchhhhcCHHHHHHHHHHHHH
Q 012182 377 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIG-PILASGVGIRTVDCGIAQL-SMHSVREICGTEDIDIAYRHFKA 453 (469)
Q Consensus 377 ~~~~~~~l~~ia~~-~~Ip~Q~~v~r~D~~gGgTig-~i~~s~~Gi~tidIGiP~r-~MHS~~E~~~~~Dv~~~~~ll~a 453 (469)
+..+...+.+.+++ .+.+..... .+++|.+ .+.+ +.|+|++.+|+--. .+|++.|-++++|+..+++++.+
T Consensus 315 ~~~~~~~l~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~-~~g~p~v~~Gpg~~~~aH~~dE~i~i~~l~~~~~~~~~ 388 (395)
T TIGR03526 315 DHLITKAALETYKRLFGKEPGVDK-----WTFSTNGVSIMG-RHGIPVIGFGPGDEDQAHAPNEKTWKEDLVKAAAMYAA 388 (395)
T ss_pred CCHHHHHHHHHHHHHhCCCCceee-----eeeecccceehh-hcCCCEEEECCcchhhccCCCceEEHHHHHHHHHHHHH
Confidence 44555666666654 445433321 2344444 3433 47999999998754 48999999999999999999999
Q ss_pred HHhhc
Q 012182 454 FYESF 458 (469)
Q Consensus 454 f~~~~ 458 (469)
++..+
T Consensus 389 ~~~~~ 393 (395)
T TIGR03526 389 IPTVY 393 (395)
T ss_pred HHHHh
Confidence 98765
No 58
>PRK07522 acetylornithine deacetylase; Provisional
Probab=90.51 E-value=0.5 Score=48.90 Aligned_cols=52 Identities=19% Similarity=0.257 Sum_probs=43.7
Q ss_pred CCCChHHHHhcCCCCcEEEech-hhccccchhhhcCHHHHHHHHHHHHHHHhhc
Q 012182 406 CGSTIGPILASGVGIRTVDCGI-AQLSMHSVREICGTEDIDIAYRHFKAFYESF 458 (469)
Q Consensus 406 gGgTig~i~~s~~Gi~tidIGi-P~r~MHS~~E~~~~~Dv~~~~~ll~af~~~~ 458 (469)
.|+|.+.++. ..|+|++.+|. +.-.+|++.|-+..+|+...++++..++..+
T Consensus 331 ~~~td~~~~~-~~gip~v~~Gpg~~~~~H~~~E~i~i~~l~~~~~~~~~~~~~~ 383 (385)
T PRK07522 331 AYGTEAGLFQ-RAGIPTVVCGPGSIEQAHKPDEFVELAQLAACEAFLRRLLASL 383 (385)
T ss_pred eeecchHHhc-cCCCCEEEECCCChhhCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 3567666665 58999999997 3458999999999999999999999998765
No 59
>PRK09104 hypothetical protein; Validated
Probab=90.01 E-value=0.7 Score=49.54 Aligned_cols=77 Identities=17% Similarity=0.158 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHH-CCCCEeEEEeecCCCCCCC-h-HHHHhcCCCCcEEEechhh--ccccchhhhcCHHHHHHHHHHH
Q 012182 377 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGST-I-GPILASGVGIRTVDCGIAQ--LSMHSVREICGTEDIDIAYRHF 451 (469)
Q Consensus 377 ~~~~~~~l~~ia~~-~~Ip~Q~~v~r~D~~gGgT-i-g~i~~s~~Gi~tidIGiP~--r~MHS~~E~~~~~Dv~~~~~ll 451 (469)
+..+...+.+.+++ .+.+..... .+|++ . +.+.. ..|||++.+|... -.+|++.|-++++|+..+++++
T Consensus 381 ~~~~v~~l~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~-~~gip~v~~g~G~~~~~aH~~nE~i~i~~l~~~~~~~ 454 (464)
T PRK09104 381 DSPALAAAKAALSDEWGKPAVLIG-----SGGSIPIVGDFKR-ILGMDSLLVGFGLDDDRIHSPNEKYDLESFHKGIRSW 454 (464)
T ss_pred CCHHHHHHHHHHHHHhCCCceecC-----CCCcHHHHHHHHH-HhCCCEEEecCCCCCCCCcCCCCCcCHHHHHHHHHHH
Confidence 44455666555554 556544321 24444 2 44443 3799999898743 3599999999999999999999
Q ss_pred HHHHhhcc
Q 012182 452 KAFYESFS 459 (469)
Q Consensus 452 ~af~~~~~ 459 (469)
..++..+.
T Consensus 455 ~~ll~~~~ 462 (464)
T PRK09104 455 ARILAALA 462 (464)
T ss_pred HHHHHHhh
Confidence 99998663
No 60
>PRK05111 acetylornithine deacetylase; Provisional
Probab=89.67 E-value=0.67 Score=48.00 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=43.3
Q ss_pred CCChHHHHhcCCCCcEEEechhh-ccccchhhhcCHHHHHHHHHHHHHHHhhc
Q 012182 407 GSTIGPILASGVGIRTVDCGIAQ-LSMHSVREICGTEDIDIAYRHFKAFYESF 458 (469)
Q Consensus 407 GgTig~i~~s~~Gi~tidIGiP~-r~MHS~~E~~~~~Dv~~~~~ll~af~~~~ 458 (469)
++|.++++. +.|+|++.+|+.. -.+|++.|-++.+|+...++++..++..+
T Consensus 329 ~~~Da~~~~-~~g~p~v~~G~g~~~~~H~~~E~v~~~~l~~~~~i~~~~~~~~ 380 (383)
T PRK05111 329 YCTEAPFIQ-QLGCPTLVLGPGSIEQAHQPDEYLELSFIKPTRELLRQLIHHF 380 (383)
T ss_pred eeccHHHHH-hcCCCEEEECCCchHhCcCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 456676665 5899999999985 35899999999999999999999998765
No 61
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=89.23 E-value=0.7 Score=51.46 Aligned_cols=79 Identities=10% Similarity=0.074 Sum_probs=55.0
Q ss_pred cCHHHHHHHHHHHHHCCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhh--ccccchhhhcCHHHHHHHHHHHHH
Q 012182 376 TSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ--LSMHSVREICGTEDIDIAYRHFKA 453 (469)
Q Consensus 376 t~~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~--r~MHS~~E~~~~~Dv~~~~~ll~a 453 (469)
.|+.+...+++.|++.|+++... ..+|||++.+.+. .+.+++.+|.-. -.+|++.|.++.+|+...++++..
T Consensus 508 ~d~~lv~~~~~aa~~~G~~~~~~-----~sggg~Da~~~a~-~~p~~mifgpg~~~g~sH~p~E~v~~edL~~g~~vl~~ 581 (591)
T PRK13590 508 SAPAWQQRWEAAVAALGLPLFRM-----PSGAGHDAMKLHE-IMPQAMLFVRGENAGISHNPLESSTADDMQLAVQAFQH 581 (591)
T ss_pred CCHHHHHHHHHHHHHcCCCcccC-----CcchhHHHHHHHH-HCCEEEEEEeeCCCCCCCCCccCCCHHHHHHHHHHHHH
Confidence 35666677777777777665421 1367788777765 455455443321 247999999999999999999999
Q ss_pred HHhhccc
Q 012182 454 FYESFSS 460 (469)
Q Consensus 454 f~~~~~~ 460 (469)
++..+..
T Consensus 582 ll~~l~~ 588 (591)
T PRK13590 582 LLDQLAA 588 (591)
T ss_pred HHHHHhh
Confidence 9977643
No 62
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=89.03 E-value=1.1 Score=46.93 Aligned_cols=78 Identities=21% Similarity=0.186 Sum_probs=58.0
Q ss_pred cCHHHHHHHHHHHHH-CCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhh-ccccchhhhcCHHHHHHHHHHHHH
Q 012182 376 TSGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ-LSMHSVREICGTEDIDIAYRHFKA 453 (469)
Q Consensus 376 t~~~~~~~l~~ia~~-~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~-r~MHS~~E~~~~~Dv~~~~~ll~a 453 (469)
.+..+.+.+.+.+++ .|.+ - ... ..||++.+.+... .|+|++.+|... --+|++.|-+.++|++..++++..
T Consensus 328 ~~~~~v~~l~~~~~~~~g~~-~-~~~---~~G~~~da~~~~~-~~~~~~~fgp~~~~~~H~~~E~v~i~~l~~~~~~~~~ 401 (409)
T COG0624 328 GDSPLVAALAEAAEELLGLP-P-EVS---TGGGTHDARFFAR-LGIPAVIFGPGDIGLAHQPNEYVELEDLVKGAKVLAR 401 (409)
T ss_pred CchHHHHHHHHHHHHhhCCC-c-eec---CCCCcchHHHHHh-cCCeeEEECCCCcccccCCCceeeHHHHHHHHHHHHH
Confidence 355666666666665 5777 2 232 1233446666554 779999999887 699999999999999999999999
Q ss_pred HHhhcc
Q 012182 454 FYESFS 459 (469)
Q Consensus 454 f~~~~~ 459 (469)
++..+.
T Consensus 402 ~l~~l~ 407 (409)
T COG0624 402 LLYELA 407 (409)
T ss_pred HHHHHh
Confidence 998775
No 63
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=88.71 E-value=0.73 Score=50.13 Aligned_cols=49 Identities=31% Similarity=0.260 Sum_probs=34.9
Q ss_pred Cceeeecc----ccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccc
Q 012182 244 NEFIFSGR----LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQG 299 (469)
Q Consensus 244 ~e~I~~~~----lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~g 299 (469)
++++.|++ -|+..|+.+++.+|.+... ......++|++.||+|+.|+..
T Consensus 102 ~~~l~g~Gt~lgaD~k~gva~~l~~l~~~~~-------~~~~i~~l~t~dEE~G~~ga~~ 154 (485)
T PRK15026 102 GEWVKARGTTLGADNGIGMASALAVLADENV-------VHGPLEVLLTMTEEAGMDGAFG 154 (485)
T ss_pred CCEEEeCCccccCccHHHHHHHHHHHHhCCC-------CCCCEEEEEEcccccCcHhHHH
Confidence 34564444 2999999999988854321 1234678999999999988875
No 64
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=88.16 E-value=0.81 Score=48.26 Aligned_cols=76 Identities=16% Similarity=0.006 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHCCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhh--ccccchhhhcCHHHHHHHHHHHHHHHh
Q 012182 379 VTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ--LSMHSVREICGTEDIDIAYRHFKAFYE 456 (469)
Q Consensus 379 ~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~--r~MHS~~E~~~~~Dv~~~~~ll~af~~ 456 (469)
.+...+++.+++.++++-.... ..+|+|.+.+... .|+|++.+|... ..+|++.|-++.+|+...++++..++.
T Consensus 329 ~l~~~~~~~~~~~~~~~~~~~~---~~~g~tDa~~~~~-~gip~v~~g~G~~~~~aH~~nE~i~i~~~~~~~~~~~~~~~ 404 (410)
T PRK06133 329 ALAEHAQGIYGELGRRLEPIDM---GTGGGTDAAFAAG-SGKAAVLEGFGLVGFGAHSNDEYIELNSIVPRLYLLTRMIM 404 (410)
T ss_pred HHHHHHHHHHHHcCCCcccccc---CCCCCchHHHHHh-cCCCceEecccCCCCCCCCCCcEEEcccHHHHHHHHHHHHH
Confidence 4566677777777776432111 1357776666554 699999855433 559999999999999999999998886
Q ss_pred hc
Q 012182 457 SF 458 (469)
Q Consensus 457 ~~ 458 (469)
.+
T Consensus 405 ~~ 406 (410)
T PRK06133 405 EL 406 (410)
T ss_pred Hh
Confidence 55
No 65
>PRK08201 hypothetical protein; Provisional
Probab=87.18 E-value=1.7 Score=46.39 Aligned_cols=75 Identities=15% Similarity=0.121 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHH-CCCCEeEEEeecCCCCCCCh---HHHHhcCCCCcEEEechhh--ccccchhhhcCHHHHHHHHHHH
Q 012182 378 GVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTI---GPILASGVGIRTVDCGIAQ--LSMHSVREICGTEDIDIAYRHF 451 (469)
Q Consensus 378 ~~~~~~l~~ia~~-~~Ip~Q~~v~r~D~~gGgTi---g~i~~s~~Gi~tidIGiP~--r~MHS~~E~~~~~Dv~~~~~ll 451 (469)
..+...+.+..++ .+.+.... ..|+|+ +.+. ...|||++.+|.-. -.+|++.|-++++|+..+++++
T Consensus 374 ~~~~~~l~~a~~~~~g~~~~~~------~~gg~~~~~~~~~-~~~gip~v~~GpG~~~~~~H~~nE~v~i~~l~~~~~~l 446 (456)
T PRK08201 374 HPAIQAAARAYEAVYGTEAAFT------RMGGSIPVVETFS-SQLHIPIVLMGFGLPSENFHAPNEHFHLENFDKGLRTL 446 (456)
T ss_pred CHHHHHHHHHHHHHhCCCceec------CCCCcHHHHHHHH-HHhCCCEEEecCCCCCCCCCCCCCCcCHHHHHHHHHHH
Confidence 3445555555554 45554321 234553 4444 34799999997643 5689999999999999999999
Q ss_pred HHHHhhcc
Q 012182 452 KAFYESFS 459 (469)
Q Consensus 452 ~af~~~~~ 459 (469)
..|+..+.
T Consensus 447 ~~~~~~~~ 454 (456)
T PRK08201 447 VEYWHQLA 454 (456)
T ss_pred HHHHHHhh
Confidence 99998764
No 66
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=86.96 E-value=1 Score=45.92 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=41.1
Q ss_pred CCCChHHHHhcCCCCcEEEechhhc-cccchhhhcCHHHHHHHHHHHHHHH
Q 012182 406 CGSTIGPILASGVGIRTVDCGIAQL-SMHSVREICGTEDIDIAYRHFKAFY 455 (469)
Q Consensus 406 gGgTig~i~~s~~Gi~tidIGiP~r-~MHS~~E~~~~~Dv~~~~~ll~af~ 455 (469)
.|+|.+.++. ..|+|++.+|.-.. .+|++.|-++.+|+...++++..|+
T Consensus 302 ~g~td~~~~~-~~Gip~v~~Gpg~~~~~H~~~E~v~i~~l~~~~~~~~~~~ 351 (352)
T PRK13007 302 YGWTDVARFS-ALGIPAVNFGPGDPALAHQRDEHVPVAQITACARILRRWL 351 (352)
T ss_pred cccchHHHHH-hCCCCEEEeCCCchhhccCCCCceEHHHHHHHHHHHHHHh
Confidence 4667666665 47999999997544 5999999999999999999999886
No 67
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=86.22 E-value=1.2 Score=48.14 Aligned_cols=75 Identities=16% Similarity=0.093 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHH-CCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhh-ccccchhhhcCHHHHHHHHHHHHHH
Q 012182 377 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ-LSMHSVREICGTEDIDIAYRHFKAF 454 (469)
Q Consensus 377 ~~~~~~~l~~ia~~-~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~-r~MHS~~E~~~~~Dv~~~~~ll~af 454 (469)
+..+...+.+.+++ .|.+.+... .+|+|.+.+.. .||+++.+|..- ..+|++.|-++++|+..+++++..+
T Consensus 388 ds~lv~~l~~a~~~v~G~~~~~~~-----~~ggTDa~~~~--~~i~~gv~gPG~~~~aH~~dE~V~i~el~~a~~iy~~~ 460 (466)
T TIGR01886 388 SDPLVQTLLKVYEKHTGKKGHEVI-----IGGGTYGRLLE--RGVAYGAMFEGGPDVMHQANEFMMLDDLILAAAIYAEA 460 (466)
T ss_pred CCHHHHHHHHHHHHHhCCCCceee-----ecCccHHHhcc--cccccccccCCCCCCccCCCcceEHHHHHHHHHHHHHH
Confidence 34566667666665 355554432 26788877775 379988888875 4589999999999999999999999
Q ss_pred Hhhc
Q 012182 455 YESF 458 (469)
Q Consensus 455 ~~~~ 458 (469)
+..|
T Consensus 461 i~~l 464 (466)
T TIGR01886 461 IYEL 464 (466)
T ss_pred HHHH
Confidence 8876
No 68
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=85.26 E-value=0.88 Score=46.59 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=39.3
Q ss_pred CCCChHHHHhcCCCCcEEEechhh-ccccchhhhcCHHHHHHHHHHHHHH
Q 012182 406 CGSTIGPILASGVGIRTVDCGIAQ-LSMHSVREICGTEDIDIAYRHFKAF 454 (469)
Q Consensus 406 gGgTig~i~~s~~Gi~tidIGiP~-r~MHS~~E~~~~~Dv~~~~~ll~af 454 (469)
+|+|.+.++.. .|||++.+|.-. --+|++.|-++++|+...++++..+
T Consensus 315 ~~~tD~~~~~~-~gip~v~~Gpg~~~~~H~~~E~i~i~~l~~~~~~~~~~ 363 (364)
T TIGR01892 315 SYGTEAPQFQE-LGAEAVVCGPGDIRQAHQPDEYVEIEDLVRCRAVLARL 363 (364)
T ss_pred cccccHHHHHh-CCCcEEEECCCChHhCCCCCceeeHHHHHHHHHHHHHh
Confidence 35677776654 799999999754 3489999999999999999988765
No 69
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=85.21 E-value=1.3 Score=46.82 Aligned_cols=53 Identities=15% Similarity=-0.063 Sum_probs=43.8
Q ss_pred eccccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccccCCcchH
Q 012182 249 SGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMF 306 (469)
Q Consensus 249 ~~~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~gA~s~~~~ 306 (469)
-++.||-.|+.+++|..+.++.. .++..+.+++|..||.|++|++-.......
T Consensus 224 ~GA~DNasGva~llEiAr~l~~~-----~p~~~v~f~~~~aEE~Gl~GS~~~~~~~~~ 276 (435)
T COG2234 224 PGADDNASGVAALLELARVLKGN-----PPKRTVRFVAFGAEESGLLGSEAYVKRLSK 276 (435)
T ss_pred CCcccccHHHHHHHHHHHHHhcC-----CCCceEEEEEecchhhcccccHHHHhcCCc
Confidence 47899999999999999988754 145567799999999999999987766653
No 70
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=84.99 E-value=0.92 Score=47.17 Aligned_cols=48 Identities=15% Similarity=0.043 Sum_probs=36.1
Q ss_pred ceeeecc-ccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 012182 245 EFIFSGR-LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 298 (469)
Q Consensus 245 e~I~~~~-lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~ 298 (469)
+++.|++ .|++.++.+++.++..++.. ....++++|+..||+|+.|+.
T Consensus 105 ~~~~grG~~D~k~~~~~~l~a~~~l~~~------~~~~v~~~~~~~EE~g~~G~~ 153 (394)
T PRK08651 105 GKVYGRGASDMKGGIAALLAAFERLDPA------GDGNIELAIVPDEETGGTGTG 153 (394)
T ss_pred CEEEecCccccchHHHHHHHHHHHHHhc------CCCCEEEEEecCccccchhHH
Confidence 3455544 79999999999999887532 144678899999999986554
No 71
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=83.51 E-value=1.4 Score=45.04 Aligned_cols=49 Identities=22% Similarity=0.187 Sum_probs=35.9
Q ss_pred ceeeecc-ccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 012182 245 EFIFSGR-LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 298 (469)
Q Consensus 245 e~I~~~~-lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~ 298 (469)
+.|.|++ .|++.++.+++.++..+.+. . ....+.++|+..||+|+.|+.
T Consensus 89 ~~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~---~~~~v~~~~~~~EE~g~~G~~ 138 (364)
T TIGR01892 89 GRLYGRGTCDMKGFLACALAAAPDLAAE--Q---LKKPLHLALTADEEVGCTGAP 138 (364)
T ss_pred CEEEecCccccchHHHHHHHHHHHHHhc--C---cCCCEEEEEEeccccCCcCHH
Confidence 3455544 79999999999988777532 1 234577999999999987655
No 72
>PRK07205 hypothetical protein; Provisional
Probab=83.46 E-value=2.4 Score=45.17 Aligned_cols=40 Identities=18% Similarity=0.115 Sum_probs=34.4
Q ss_pred CcEEEech--h--hccccchhhhcCHHHHHHHHHHHHHHHhhcc
Q 012182 420 IRTVDCGI--A--QLSMHSVREICGTEDIDIAYRHFKAFYESFS 459 (469)
Q Consensus 420 i~tidIGi--P--~r~MHS~~E~~~~~Dv~~~~~ll~af~~~~~ 459 (469)
.+++.+|+ | ...+|++.|-++++|++.+++++..++.++.
T Consensus 399 ~~~i~~G~~~Pg~~~~aH~~nE~v~i~~l~~~~~~l~~~l~~l~ 442 (444)
T PRK07205 399 PNCVAFGALFPGAPQTEHQANEHIVLEDLYRAMDIYAEAIYRLT 442 (444)
T ss_pred CCcEEECCccCCCCCCCcCcccCccHHHHHHHHHHHHHHHHHHh
Confidence 57888884 4 4679999999999999999999999998763
No 73
>PRK07907 hypothetical protein; Provisional
Probab=83.05 E-value=3.6 Score=43.86 Aligned_cols=78 Identities=12% Similarity=0.029 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHH-CCCCEeEEEeecCCCCCCC-h-HHHHhcCCCCcEEEechhh--ccccchhhhcCHHHHHHHHHHH
Q 012182 377 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGST-I-GPILASGVGIRTVDCGIAQ--LSMHSVREICGTEDIDIAYRHF 451 (469)
Q Consensus 377 ~~~~~~~l~~ia~~-~~Ip~Q~~v~r~D~~gGgT-i-g~i~~s~~Gi~tidIGiP~--r~MHS~~E~~~~~Dv~~~~~ll 451 (469)
+..+...+.+.+++ .|++..... .+|++ . +.+.....++|++.+|.-. -.+|++.|-++++|+..+++++
T Consensus 365 ~~~~~~~l~~a~~~~~g~~~~~~~-----~~g~~~~~~~~~~~~~~~~~v~~Gpg~~~~~aH~~nE~i~i~~l~~~~~~~ 439 (449)
T PRK07907 365 SGPAYDAARAAMREAWGKDPVDMG-----MGGSIPFIAELQEAFPQAEILVTGVEDPKTRAHSPNESVHLGELERAAVAE 439 (449)
T ss_pred CCHHHHHHHHHHHHHhCCCceecC-----CCCcHHHHHHHHHhcCCCcEEEeccCCCCCCCcCCCCCcCHHHHHHHHHHH
Confidence 44455555555554 477654221 23332 1 2233333468999999754 4689999999999999999999
Q ss_pred HHHHhhcc
Q 012182 452 KAFYESFS 459 (469)
Q Consensus 452 ~af~~~~~ 459 (469)
..++..|.
T Consensus 440 ~~~l~~~~ 447 (449)
T PRK07907 440 ALLLARLA 447 (449)
T ss_pred HHHHHHHh
Confidence 99998874
No 74
>PRK06156 hypothetical protein; Provisional
Probab=82.72 E-value=2.8 Score=45.87 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=49.2
Q ss_pred HHHHHHHHHHH-HCCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhhc----cccchhhhcCHHHHHHHHHHHHH
Q 012182 379 VTAFLFKEIAK-LHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQL----SMHSVREICGTEDIDIAYRHFKA 453 (469)
Q Consensus 379 ~~~~~l~~ia~-~~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~r----~MHS~~E~~~~~Dv~~~~~ll~a 453 (469)
.+...+.+.++ ..|.+..... .+|+|.+.+.. +++.+|.-.. .||++.|.++++++...++++..
T Consensus 440 ~lv~~l~~a~~~~~G~~~~~~~-----~~ggTDa~~~~-----~~v~fGP~~~g~~~~aHt~dE~V~ie~l~~~~~i~~~ 509 (520)
T PRK06156 440 PWLKTLLDVFGHFTGLDAKPVA-----IAGSTNAKLFP-----NAVSFGPAMPGVKYTGHTENEFKTVEQFMLDLQMYTE 509 (520)
T ss_pred HHHHHHHHHHHHHhCCCCceee-----ecChhhhhhCC-----ccEEEcCCCCCCCCCCcCcccCCCHHHHHHHHHHHHH
Confidence 34444444443 3455544322 25777765542 5777886322 38999999999999999999999
Q ss_pred HHhhccc
Q 012182 454 FYESFSS 460 (469)
Q Consensus 454 f~~~~~~ 460 (469)
++..+..
T Consensus 510 ~l~~l~~ 516 (520)
T PRK06156 510 MLIRIGN 516 (520)
T ss_pred HHHHHhc
Confidence 9988765
No 75
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=81.92 E-value=1.7 Score=45.05 Aligned_cols=51 Identities=14% Similarity=0.004 Sum_probs=36.8
Q ss_pred ceeeecc-ccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 012182 245 EFIFSGR-LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 298 (469)
Q Consensus 245 e~I~~~~-lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~ 298 (469)
+.|.|++ .||+.++++++.++..+..... .....++++|+..||+|+.|+.
T Consensus 96 g~i~grG~~D~k~~~a~~l~a~~~l~~~~~---~~~~~i~~~~~~~EE~g~~G~~ 147 (375)
T TIGR01910 96 GKLYGRGATDMKGGLVALLYALKAIREAGI---KPNGNIILQSVVDEESGEAGTL 147 (375)
T ss_pred CEEEecCccccchHHHHHHHHHHHHHHcCC---CCCccEEEEEEcCcccCchhHH
Confidence 3455554 6999999999998887753210 1244678999999999987665
No 76
>PRK08652 acetylornithine deacetylase; Provisional
Probab=81.61 E-value=1.7 Score=44.19 Aligned_cols=42 Identities=21% Similarity=0.074 Sum_probs=33.0
Q ss_pred cccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccc
Q 012182 251 RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 297 (469)
Q Consensus 251 ~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga 297 (469)
..|++.++.+++.|+..+... .....++++|+..||+|+.|+
T Consensus 85 ~~D~Kg~~a~~l~a~~~l~~~-----~~~~~v~~~~~~dEE~g~~G~ 126 (347)
T PRK08652 85 ACDAKGGVAAILLALEELGKE-----FEDLNVGIAFVSDEEEGGRGS 126 (347)
T ss_pred chhhhHHHHHHHHHHHHHhhc-----ccCCCEEEEEecCcccCChhH
Confidence 689999999999999877532 123357889999999998765
No 77
>PRK13381 peptidase T; Provisional
Probab=81.38 E-value=1.9 Score=45.16 Aligned_cols=51 Identities=27% Similarity=0.319 Sum_probs=37.4
Q ss_pred Cceeeecc-----ccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 012182 244 NEFIFSGR-----LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 298 (469)
Q Consensus 244 ~e~I~~~~-----lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~ 298 (469)
++.+.|++ -|+..|+.+++.|+..+... . .....++++|+..||+|+.|+.
T Consensus 124 ~~~~~GrG~~~~g~DmKgg~aa~l~a~~~l~~~--~--~~~g~i~~~~~~dEE~g~~G~~ 179 (404)
T PRK13381 124 EDIIFSDGTSVLGADNKAAIAVVMTLLENLTEN--E--VEHGDIVVAFVPDEEIGLRGAK 179 (404)
T ss_pred CcEEeCCCccccccccHHHHHHHHHHHHHHHhc--C--CCCCCEEEEEEcccccccccHH
Confidence 34566655 69999999999998877532 0 1234578999999999987655
No 78
>PRK07522 acetylornithine deacetylase; Provisional
Probab=81.20 E-value=1.8 Score=44.79 Aligned_cols=46 Identities=20% Similarity=0.065 Sum_probs=33.8
Q ss_pred eeccccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 012182 248 FSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 298 (469)
Q Consensus 248 ~~~~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~ 298 (469)
.-...|++.++.+++.|+..+.+. .....+.++|+..||+|++|+.
T Consensus 99 GrG~~D~Kg~~a~~l~a~~~l~~~-----~~~~~i~~~~~~dEE~g~~G~~ 144 (385)
T PRK07522 99 GRGTCDMKGFIAAALAAVPELAAA-----PLRRPLHLAFSYDEEVGCLGVP 144 (385)
T ss_pred eccccccchHHHHHHHHHHHHHhC-----CCCCCEEEEEEeccccCCccHH
Confidence 334579999999999888776532 1234578999999999876544
No 79
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=80.44 E-value=7.1 Score=44.52 Aligned_cols=152 Identities=18% Similarity=0.110 Sum_probs=87.0
Q ss_pred ccccCCCCceeeeccccchhcHHHHHHHHHH---cCCCCCCCCCCCceEEEEEEeccccCcccccccCCcchHHHHHHHH
Q 012182 237 SCLGGANNEFIFSGRLDNLASSYCGLRALID---SCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRRIV 313 (469)
Q Consensus 237 ~~~~Gl~~e~I~~~~lDnr~g~~~~leal~~---~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~gA~s~~~~dil~ri~ 313 (469)
..++|-..+=+.-.+.|.=.|++.+++..+. +.+..+ .+..+++++.+|.||-|+-|++== +
T Consensus 354 ~ViigahrDSw~~Ga~dp~sGta~Ll~i~~~~~~~~k~gw---rP~RtI~F~sWdAeEfGliGStE~--------~---- 418 (702)
T KOG2195|consen 354 YVIIGAHRDSWTFGAIDPNSGTALLLEIARALSKLKKRGW---RPRRTILFASWDAEEFGLLGSTEW--------A---- 418 (702)
T ss_pred EEEEeccccccccCCcCCCccHHHHHHHHHHHHHHHHcCC---CccceEEEEEccchhccccccHHH--------H----
Confidence 3445555555555599999998877654443 332222 245578899999999999998721 1
Q ss_pred hcccccCCchhhhhhhccCceEEEEecCCCCCCCCCccccCCCCCcCCCCceEEEcCCCCcccCHHHHHHHHHHHHHCCC
Q 012182 314 GSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNL 393 (469)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~s~~IS~DvahA~~Pn~~~~~~~~~~~~LG~GpvIk~~~~~~y~t~~~~~~~l~~ia~~~~I 393 (469)
|++...+..-...-+|+..+.=|| .+. +-.++|.+...++++++...=
T Consensus 419 ----------E~~~~~L~~~av~yin~d~~~~~~--------------~~l--------~~~~~PlL~~li~~~~k~~~~ 466 (702)
T KOG2195|consen 419 ----------EEYLKNLKSRAVVYINVDNAVLGD--------------YTL--------HVKTTPLLTDLIEEAAKSVLS 466 (702)
T ss_pred ----------HHHHHHhhheeEEEEeccccccCC--------------cee--------EEecCccHHHHHHHHHhccCC
Confidence 122222222333333332232221 222 123677888889998888655
Q ss_pred CEeEEE---eecCCCCCCC-hHHHHhcCCCCcEEEechhh--ccccchhhh
Q 012182 394 PTQEFV---VRNDMGCGST-IGPILASGVGIRTVDCGIAQ--LSMHSVREI 438 (469)
Q Consensus 394 p~Q~~v---~r~D~~gGgT-ig~i~~s~~Gi~tidIGiP~--r~MHS~~E~ 438 (469)
|.-... ... .||+| ..+++. ..|||++++.--- =+-||..++
T Consensus 467 p~~~~~~~~v~~--~g~~Sd~~~F~~-~~GIpsv~~~f~~~yP~yhs~~dt 514 (702)
T KOG2195|consen 467 PDKGDQSNRVLS--LGGGSDYASFLQ-FAGIPSVDFAFNRTYPFYHSTYDT 514 (702)
T ss_pred CCccccceeEec--cCCCCcchhhcc-ccCcceeeeeecCCcceeecccCc
Confidence 543322 222 35555 556655 4899999875433 345776665
No 80
>PRK07473 carboxypeptidase; Provisional
Probab=79.80 E-value=2 Score=44.84 Aligned_cols=50 Identities=22% Similarity=0.196 Sum_probs=35.1
Q ss_pred eeeec-cccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 012182 246 FIFSG-RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 298 (469)
Q Consensus 246 ~I~~~-~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~ 298 (469)
.+.|+ ..|++.++.+++.|+..+..... .....+.++++..||+|+.|+.
T Consensus 104 ~lyGrG~~D~Kgglaa~l~A~~~l~~~~~---~~~~~v~~~~~~dEE~g~~g~~ 154 (376)
T PRK07473 104 KCYGPGILDMKGGNYLALEAIRQLARAGI---TTPLPITVLFTPDEEVGTPSTR 154 (376)
T ss_pred EEEcCchhhchHHHHHHHHHHHHHHHcCC---CCCCCEEEEEeCCcccCCccHH
Confidence 44444 48999999999998887753210 1123477899999999987654
No 81
>PRK08262 hypothetical protein; Provisional
Probab=79.56 E-value=2.5 Score=45.52 Aligned_cols=78 Identities=9% Similarity=0.046 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHCC--CCEeEEEeecCCCCCCChHHHHhcCC----CCcEEEechh-hccccchhhhcCHHHHHHHHH
Q 012182 377 SGVTAFLFKEIAKLHN--LPTQEFVVRNDMGCGSTIGPILASGV----GIRTVDCGIA-QLSMHSVREICGTEDIDIAYR 449 (469)
Q Consensus 377 ~~~~~~~l~~ia~~~~--Ip~Q~~v~r~D~~gGgTig~i~~s~~----Gi~tidIGiP-~r~MHS~~E~~~~~Dv~~~~~ 449 (469)
|..+...+++.+++.. .+..... .+|||++.+..... +++++..|.- .-.+|++.|-++.+|+...++
T Consensus 400 ~~~lv~~l~~a~~~~~g~~~~~~~~-----~~g~tDa~~~~~~~p~~~~~~~~~~gpg~~~~~Ht~dE~i~i~~l~~~~~ 474 (486)
T PRK08262 400 DSAAYKLLAATIREVFPDVVVAPYL-----VVGATDSRHYSGISDNVYRFSPLRLSPEDLARFHGTNERISVANYARMIR 474 (486)
T ss_pred CCHHHHHHHHHHHHHCCCCccccce-----ecccccHHHHHHhcCCeEEECCccCCcccccCCCCCCCceeHHHHHHHHH
Confidence 4566677777777644 3333221 25778777765431 2344444432 245899999999999999999
Q ss_pred HHHHHHhhcc
Q 012182 450 HFKAFYESFS 459 (469)
Q Consensus 450 ll~af~~~~~ 459 (469)
++..++..+.
T Consensus 475 i~~~~l~~~~ 484 (486)
T PRK08262 475 FYYRLIENAA 484 (486)
T ss_pred HHHHHHHHhh
Confidence 9999997763
No 82
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=79.12 E-value=2.2 Score=44.06 Aligned_cols=51 Identities=14% Similarity=0.005 Sum_probs=35.4
Q ss_pred ceeeecc-ccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 012182 245 EFIFSGR-LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 298 (469)
Q Consensus 245 e~I~~~~-lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~ 298 (469)
+.+.|.+ .|++.++.+++.|+..+.... ......+.++|+..||+|+.|+.
T Consensus 91 g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~---~~~~~~i~l~~~~dEE~g~~G~~ 142 (377)
T PRK08588 91 GKLYGRGATDMKSGLAALVIAMIELKEQG---QLLNGTIRLLATAGEEVGELGAK 142 (377)
T ss_pred CEEEecCcccccchHHHHHHHHHHHHHcC---CCCCCcEEEEEEcccccCchhHH
Confidence 3455554 499999999888877664321 01234678999999999876654
No 83
>PRK06915 acetylornithine deacetylase; Validated
Probab=77.66 E-value=3 Score=43.88 Aligned_cols=51 Identities=16% Similarity=-0.016 Sum_probs=36.0
Q ss_pred ceeeeccc-cchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 012182 245 EFIFSGRL-DNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 298 (469)
Q Consensus 245 e~I~~~~l-Dnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~ 298 (469)
+.+.|++- |++.++.+++.|+..++.... .....+.++++..||+|+.|+.
T Consensus 125 g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~---~~~~~v~~~~~~dEE~g~~G~~ 176 (422)
T PRK06915 125 GRIYGRGTTDMKGGNVALLLAMEALIESGI---ELKGDVIFQSVIEEESGGAGTL 176 (422)
T ss_pred CEEEecCcccchHHHHHHHHHHHHHHHcCC---CCCCcEEEEEecccccCCcchH
Confidence 45666665 999999999888877653211 1234567899999999987653
No 84
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=77.58 E-value=3.3 Score=43.70 Aligned_cols=44 Identities=23% Similarity=0.212 Sum_probs=32.9
Q ss_pred ceeeeccccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccC
Q 012182 245 EFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVG 293 (469)
Q Consensus 245 e~I~~~~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVG 293 (469)
..+.| -|++.|+++++.|+..+.+.. .+ ....+.++|+..||+|
T Consensus 136 ~~l~G--~D~KgglAa~l~A~~~L~e~~-~~--~~g~I~~~ft~dEE~g 179 (410)
T TIGR01882 136 TTLLG--ADDKAGIAEIMTAADYLINHP-EI--KHGTIRVAFTPDEEIG 179 (410)
T ss_pred CEeec--ccCHHHHHHHHHHHHHHHhCC-CC--CCCCEEEEEECcccCC
Confidence 45655 899999999999998875421 11 2345789999999987
No 85
>PRK08596 acetylornithine deacetylase; Validated
Probab=77.52 E-value=2.8 Score=44.28 Aligned_cols=51 Identities=14% Similarity=-0.010 Sum_probs=36.2
Q ss_pred ceeeec-cccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 012182 245 EFIFSG-RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 298 (469)
Q Consensus 245 e~I~~~-~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~ 298 (469)
+.|.|+ ..|++.++.+++.|+..+..... .....++++|+..||.|+.|+.
T Consensus 109 g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~---~~~~~v~~~~~~dEE~g~~G~~ 160 (421)
T PRK08596 109 GWLYGRGAADMKGGLAGALFAIQLLHEAGI---ELPGDLIFQSVIGEEVGEAGTL 160 (421)
T ss_pred CEEEeccccccchHHHHHHHHHHHHHHcCC---CCCCcEEEEEEeccccCCcCHH
Confidence 345554 45999999999999887753211 1344678999999999986554
No 86
>PRK07205 hypothetical protein; Provisional
Probab=77.22 E-value=3.2 Score=44.20 Aligned_cols=50 Identities=14% Similarity=-0.013 Sum_probs=36.3
Q ss_pred ceeeecc-ccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccc
Q 012182 245 EFIFSGR-LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 297 (469)
Q Consensus 245 e~I~~~~-lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga 297 (469)
+.|.|++ .|++.++.++|.|+..+.+... .....+.+++...||+|+.|.
T Consensus 107 g~lyGRGa~DmKgglaa~l~Al~~l~~~~~---~~~~~i~l~~~~dEE~g~~g~ 157 (444)
T PRK07205 107 GCLFGRGTQDDKGPSMAALYAVKALLDAGV---QFNKRIRFIFGTDEETLWRCM 157 (444)
T ss_pred CEEEECCcccCcHHHHHHHHHHHHHHHcCC---CCCCcEEEEEECCcccCcccH
Confidence 3455654 8999999999999887753210 123457899999999998754
No 87
>PRK07318 dipeptidase PepV; Reviewed
Probab=77.12 E-value=2.7 Score=45.16 Aligned_cols=50 Identities=14% Similarity=-0.015 Sum_probs=35.2
Q ss_pred eeeecc-ccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 012182 246 FIFSGR-LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 298 (469)
Q Consensus 246 ~I~~~~-lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~ 298 (469)
++.|++ .|+..++.+++.|++.++.... .....+.++++..||+|+.|+.
T Consensus 110 ~lyGRG~~DmKgg~aa~l~Al~~l~~~g~---~~~~~i~l~~~~DEE~g~~G~~ 160 (466)
T PRK07318 110 KIYARGTSDDKGPTMAAYYALKIIKELGL---PLSKKVRFIVGTDEESGWKCMD 160 (466)
T ss_pred EEEEcccccCcHHHHHHHHHHHHHHHcCC---CCCccEEEEEEcccccCchhHH
Confidence 444443 7999999999998887753210 1233577899999999986653
No 88
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=76.96 E-value=2.9 Score=42.55 Aligned_cols=47 Identities=15% Similarity=0.077 Sum_probs=35.6
Q ss_pred eeee-ccccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccc
Q 012182 246 FIFS-GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQG 299 (469)
Q Consensus 246 ~I~~-~~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~g 299 (469)
+|.| ...|+..++++++.|+..+... ....++++++.||.|+.|...
T Consensus 74 ~i~GrG~~D~Kg~~aa~l~a~~~l~~~-------~~~i~~~~~~dEE~g~~G~~~ 121 (336)
T TIGR01902 74 LLYGRGAVDAKGPLIAMIFATWLLNEK-------GIKVIVSGLVDEESSSKGARE 121 (336)
T ss_pred EEEEecccCCCcHHHHHHHHHHHHHhC-------CCcEEEEEEeCcccCCccHHH
Confidence 3444 4689999999999998877532 235778999999998877663
No 89
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=76.45 E-value=3.2 Score=43.76 Aligned_cols=50 Identities=18% Similarity=0.060 Sum_probs=34.9
Q ss_pred eeeecc-ccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 012182 246 FIFSGR-LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 298 (469)
Q Consensus 246 ~I~~~~-lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~ 298 (469)
.|.|++ .|+..++.+++.++..++... . .....++++|+..||+|+.|+.
T Consensus 128 ~iyGrG~~D~kgg~a~~l~a~~~l~~~~--~-~~~~~i~~~~~~dEE~g~~G~~ 178 (410)
T PRK06133 128 RAYGPGIADDKGGVAVILHALKILQQLG--F-KDYGTLTVLFNPDEETGSPGSR 178 (410)
T ss_pred EEECCccccchHHHHHHHHHHHHHHHcC--C-CCCCCEEEEEECCcccCCccHH
Confidence 344444 799999999998888765321 0 1234577899999999876554
No 90
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=75.93 E-value=3.1 Score=43.13 Aligned_cols=48 Identities=23% Similarity=0.083 Sum_probs=34.1
Q ss_pred ceeeecc-ccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcc
Q 012182 245 EFIFSGR-LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSD 295 (469)
Q Consensus 245 e~I~~~~-lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsr 295 (469)
++|.|++ .|+..|+.+++.|+..+..... .....+.++|+..||.|+.
T Consensus 108 g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~---~~~~~v~~~~~~dEE~g~~ 156 (400)
T PRK13983 108 GKIYGRGSEDNGQGIVSSLLALKALMDLGI---RPKYNLGLAFVSDEETGSK 156 (400)
T ss_pred CEEEecCccCccchHHHHHHHHHHHHHhCC---CCCCcEEEEEEeccccCCc
Confidence 3455554 8999999999988777643210 1334578999999999875
No 91
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=74.51 E-value=3.6 Score=42.95 Aligned_cols=50 Identities=16% Similarity=0.150 Sum_probs=35.1
Q ss_pred eeeeccc-cchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcc-ccc
Q 012182 246 FIFSGRL-DNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSD-SYQ 298 (469)
Q Consensus 246 ~I~~~~l-Dnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsr-ga~ 298 (469)
.|.|.+- |+..++.+++.|+..+.... . .....+.++|+..||+|+. |+.
T Consensus 104 ~iyGrG~~D~K~~~aa~l~a~~~l~~~~--~-~~~~~v~l~~~~dEE~g~~~G~~ 155 (400)
T TIGR01880 104 NIYARGAQDMKCVGVQYLEAVRNLKASG--F-KFKRTIHISFVPDEEIGGHDGME 155 (400)
T ss_pred eEEEcccccccHHHHHHHHHHHHHHHcC--C-CCCceEEEEEeCCcccCcHhHHH
Confidence 4555555 99999999998888775321 0 1234577899999999863 654
No 92
>PRK07338 hypothetical protein; Provisional
Probab=73.69 E-value=5.8 Score=41.43 Aligned_cols=53 Identities=21% Similarity=0.119 Sum_probs=37.7
Q ss_pred CCceeeec-cccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 012182 243 NNEFIFSG-RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 298 (469)
Q Consensus 243 ~~e~I~~~-~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~ 298 (469)
.++.|.|+ ..|++.++.+++.|+..+..... .......++|+..||+|+.|+.
T Consensus 118 ~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~---~~~~~i~~~~~~dEE~g~~g~~ 171 (402)
T PRK07338 118 DDGTLNGPGVADMKGGIVVMLAALLAFERSPL---ADKLGYDVLINPDEEIGSPASA 171 (402)
T ss_pred eCCEEECCcHHhhhHHHHHHHHHHHHHHhcCC---CCCCCEEEEEECCcccCChhhH
Confidence 34567774 48999999999999887753210 1233467889999999987654
No 93
>PRK09133 hypothetical protein; Provisional
Probab=73.44 E-value=4 Score=43.82 Aligned_cols=51 Identities=16% Similarity=0.109 Sum_probs=35.7
Q ss_pred ceeeecc-ccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccc-cCccccc
Q 012182 245 EFIFSGR-LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEE-VGSDSYQ 298 (469)
Q Consensus 245 e~I~~~~-lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEE-VGsrga~ 298 (469)
++|.|++ .|++.++++++.+++.+..... .....++++++..|| .|+.|+.
T Consensus 132 g~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~---~~~~~i~~~~~~dEE~~g~~G~~ 184 (472)
T PRK09133 132 GYFYGRGTSDDKADAAIWVATLIRLKREGF---KPKRDIILALTGDEEGTPMNGVA 184 (472)
T ss_pred CEEEecCcccchHHHHHHHHHHHHHHhcCC---CCCCCEEEEEECccccCccchHH
Confidence 4566664 5999999999998887753210 124467899999999 5665543
No 94
>PRK05111 acetylornithine deacetylase; Provisional
Probab=73.06 E-value=4.2 Score=42.03 Aligned_cols=48 Identities=15% Similarity=-0.014 Sum_probs=35.2
Q ss_pred eeeec-cccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 012182 246 FIFSG-RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 298 (469)
Q Consensus 246 ~I~~~-~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~ 298 (469)
.+.|+ ..|+..++.+++.++..+... . ....++++|+..||+|+.|+.
T Consensus 103 ~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~---~~~~i~~~~~~~EE~g~~G~~ 151 (383)
T PRK05111 103 KLYGLGTADMKGFFAFILEALRDIDLT--K---LKKPLYILATADEETSMAGAR 151 (383)
T ss_pred EEEecccccccHHHHHHHHHHHHHhhc--C---CCCCeEEEEEeccccCcccHH
Confidence 34444 489999999999998877532 1 233577899999999987655
No 95
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=71.01 E-value=7.9 Score=39.45 Aligned_cols=44 Identities=14% Similarity=0.079 Sum_probs=33.9
Q ss_pred Cceeeeccc-cchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCc
Q 012182 244 NEFIFSGRL-DNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGS 294 (469)
Q Consensus 244 ~e~I~~~~l-Dnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGs 294 (469)
++.|.|++- |++.++.+++.|+..+.. ......++|+..||+|+
T Consensus 85 ~g~i~GrG~~D~Kg~~a~~l~a~~~l~~-------~~~~i~~~~~~~EE~~~ 129 (352)
T PRK13007 85 GDRLYGCGASDMKSGLAVMLHLAATLAE-------PAHDLTLVFYDCEEVEA 129 (352)
T ss_pred CCEEEccCcccccHHHHHHHHHHHHhhc-------cCCCeEEEEEecccccC
Confidence 456766665 999999999999887732 23457789999999986
No 96
>PRK06446 hypothetical protein; Provisional
Probab=70.59 E-value=4.6 Score=42.93 Aligned_cols=47 Identities=19% Similarity=0.082 Sum_probs=34.0
Q ss_pred eeeccccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccc
Q 012182 247 IFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 297 (469)
Q Consensus 247 I~~~~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga 297 (469)
+.=.+-|++.++.+++.|+..+.... .......++|+..||+|+.|.
T Consensus 97 yGRGa~DmKgglaa~l~A~~~l~~~~----~~~~~i~~~~~~dEE~g~~g~ 143 (436)
T PRK06446 97 YARGASDNKGTLMARLFAIKHLIDKH----KLNVNVKFLYEGEEEIGSPNL 143 (436)
T ss_pred EEEeccCCcHHHHHHHHHHHHHHHcC----CCCCCEEEEEEcccccCCHhH
Confidence 33456899999999999997764210 123356789999999998753
No 97
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=69.44 E-value=5.3 Score=42.27 Aligned_cols=59 Identities=12% Similarity=-0.100 Sum_probs=41.3
Q ss_pred eeeccccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccC-----cccccccCCcchHHH
Q 012182 247 IFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVG-----SDSYQGAGAPTMFQA 308 (469)
Q Consensus 247 I~~~~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVG-----srga~gA~s~~~~di 308 (469)
-.|.++|+.+|+.++|++++.++++.. ......-+++|..||-+ ..|++.....+.++-
T Consensus 82 ~~gG~~dg~~Gv~~~le~~~~l~~~~~---~~~~~i~vi~~~~EEg~rf~~~~~Gs~~~~g~~~~~~ 145 (406)
T TIGR03176 82 VNGGNLDGQFGALAAWLAVDYLKEKYG---APLRTVEVLSMAEEEGSRFPYVFWGSKNIFGLAKPED 145 (406)
T ss_pred CCCCccCchhhHHHHHHHHHHHHHcCC---CCCCCeEEEEeccccCccCCcccccHHHHhCCCCHHH
Confidence 357899999999999999998864311 13344567778888865 667766666554443
No 98
>PRK09104 hypothetical protein; Validated
Probab=69.27 E-value=5.5 Score=42.70 Aligned_cols=49 Identities=18% Similarity=0.015 Sum_probs=34.7
Q ss_pred eeecc-ccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 012182 247 IFSGR-LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 298 (469)
Q Consensus 247 I~~~~-lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~ 298 (469)
|.|++ .|++.++.++++|+..+.+... .....+.+++...||+|+.|..
T Consensus 121 lyGRG~~D~Kg~laa~l~a~~~l~~~~~---~~~~~i~~~~~~dEE~g~~g~~ 170 (464)
T PRK09104 121 IVARGASDDKGQLMTFVEACRAWKAVTG---SLPVRVTILFEGEEESGSPSLV 170 (464)
T ss_pred EEEecccCCcHHHHHHHHHHHHHHHhcC---CCCCcEEEEEECccccCCccHH
Confidence 55544 8999999999999887753210 1233467899999999986543
No 99
>PRK08262 hypothetical protein; Provisional
Probab=68.68 E-value=5.9 Score=42.71 Aligned_cols=50 Identities=20% Similarity=0.157 Sum_probs=35.9
Q ss_pred eeeec-cccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 012182 246 FIFSG-RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 298 (469)
Q Consensus 246 ~I~~~-~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~ 298 (469)
.|.|+ ..|+..++++++.|+..+++... .....+.++|...||+|+.|+.
T Consensus 146 ~lyGRG~~D~Kg~~aa~L~A~~~l~~~~~---~l~~~I~llf~~dEE~g~~G~~ 196 (486)
T PRK08262 146 YVWGRGALDDKGSLVAILEAAEALLAQGF---QPRRTIYLAFGHDEEVGGLGAR 196 (486)
T ss_pred EEEecCccccchhHHHHHHHHHHHHHcCC---CCCCeEEEEEecccccCCcCHH
Confidence 34444 48999999999999887753210 1234577899999999987654
No 100
>PRK06156 hypothetical protein; Provisional
Probab=68.39 E-value=5.9 Score=43.34 Aligned_cols=50 Identities=16% Similarity=0.125 Sum_probs=34.5
Q ss_pred eeeec-cccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 012182 246 FIFSG-RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 298 (469)
Q Consensus 246 ~I~~~-~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~ 298 (469)
++.|+ .-|+..++.+++.|+..+.... . .....+.++|+..||+|+.|+.
T Consensus 146 ~lyGRG~~D~Kgg~a~~l~a~~~l~~~~--~-~~~~~i~~~~~~dEE~g~~G~~ 196 (520)
T PRK06156 146 RLYGRGTEDDKGAIVTALYAMKAIKDSG--L-PLARRIELLVYTTEETDGDPLK 196 (520)
T ss_pred EEEEcCcccchHHHHHHHHHHHHHHHcC--C-CCCceEEEEEecccccCchhHH
Confidence 34443 3699999999988877664321 0 1234577899999999988655
No 101
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=66.85 E-value=6.4 Score=41.32 Aligned_cols=52 Identities=15% Similarity=0.047 Sum_probs=35.7
Q ss_pred ccccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEecccc-----CcccccccCCcc
Q 012182 250 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEV-----GSDSYQGAGAPT 304 (469)
Q Consensus 250 ~~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEV-----Gsrga~gA~s~~ 304 (469)
.++|++.|+.+++++++.++.... .....+.++++..||. |+.|+.......
T Consensus 83 g~~dg~~gvaa~l~a~~~l~~~g~---~~~~~i~~~~~~dEE~~~f~~~~~Gs~~~~~~~ 139 (401)
T TIGR01879 83 GNFDGQLGVLAGIEVVDALKEAYV---VPLHPIEVVAFTEEEGSRFPYGMWGSRNMVGLA 139 (401)
T ss_pred CccCCHHHHHHHHHHHHHHHHcCC---CCCCCeEEEEEeCCcCcCcccccccHHHHhccc
Confidence 356888899999999888754311 1344678999999996 566665554433
No 102
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=66.62 E-value=7.6 Score=39.98 Aligned_cols=51 Identities=12% Similarity=-0.010 Sum_probs=35.4
Q ss_pred ceeeeccc-cchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCc-cccc
Q 012182 245 EFIFSGRL-DNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGS-DSYQ 298 (469)
Q Consensus 245 e~I~~~~l-Dnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGs-rga~ 298 (469)
+.+.|.+- |++.++.+++.|+..+.... ......+.++|+..||+|+ +|+.
T Consensus 87 g~~yGrG~~D~Kgg~a~~l~a~~~l~~~~---~~~~~~v~~~~~~dEE~~~~~G~~ 139 (370)
T TIGR01246 87 GKLYGRGAADMKGSLAAFIVAAERFVKKN---PDHKGSISLLITSDEEGTAIDGTK 139 (370)
T ss_pred CEEEecccccchHHHHHHHHHHHHHHHhc---CCCCCcEEEEEEeccccCCCcCHH
Confidence 45667665 99999999988887664321 0123467889999999875 4554
No 103
>PRK08201 hypothetical protein; Provisional
Probab=66.42 E-value=6.2 Score=42.11 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=34.1
Q ss_pred ceeeecc-ccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccc
Q 012182 245 EFIFSGR-LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 297 (469)
Q Consensus 245 e~I~~~~-lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga 297 (469)
++|.|++ -|++.++++++.|+..+..... .....+.++++..||+|+.|.
T Consensus 111 g~lyGRG~~DmKgglaa~l~a~~~l~~~~~---~~~~~i~~~~~~dEE~g~~g~ 161 (456)
T PRK08201 111 GKLYARGASDDKGQVFMHLKAVEALLKVEG---TLPVNVKFCIEGEEEIGSPNL 161 (456)
T ss_pred CEEEEEecccCcHHHHHHHHHHHHHHHhcC---CCCCCEEEEEEcccccCCccH
Confidence 3455544 7999999999988877642110 123356788999999987653
No 104
>PRK05469 peptidase T; Provisional
Probab=65.76 E-value=8.6 Score=40.37 Aligned_cols=43 Identities=26% Similarity=0.186 Sum_probs=31.5
Q ss_pred ccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 012182 252 LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 298 (469)
Q Consensus 252 lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~ 298 (469)
.|++.|+.+++.|+..++... ......+.++|+..||+| .|+.
T Consensus 139 ~D~Kgglaa~l~a~~~l~~~~---~~~~g~v~~~f~~dEE~g-~Ga~ 181 (408)
T PRK05469 139 ADDKAGIAEIMTALEYLIAHP---EIKHGDIRVAFTPDEEIG-RGAD 181 (408)
T ss_pred ccchHHHHHHHHHHHHHHhCC---CCCCCCEEEEEecccccC-CCHH
Confidence 899999999998888775321 012346789999999997 4443
No 105
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=65.18 E-value=8.3 Score=40.55 Aligned_cols=49 Identities=12% Similarity=-0.086 Sum_probs=35.3
Q ss_pred ceeeec-cccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccc
Q 012182 245 EFIFSG-RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDS 296 (469)
Q Consensus 245 e~I~~~-~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrg 296 (469)
+.|.|+ +.|++.++.+++.|++.++... . .....+.++++..||+|+.|
T Consensus 114 g~iyGrGa~D~Kg~~aa~l~a~~~l~~~~--~-~~~~~v~~~~~~dEE~g~~~ 163 (427)
T PRK13013 114 GRIYGRGACDMKGGLAASIIAAEAFLAVY--P-DFAGSIEISGTADEESGGFG 163 (427)
T ss_pred CEEEeccccccchHHHHHHHHHHHHHHhC--C-CCCccEEEEEEeccccCChh
Confidence 345554 7899999999999888775321 0 12345778999999998764
No 106
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=64.84 E-value=22 Score=38.49 Aligned_cols=79 Identities=19% Similarity=0.277 Sum_probs=53.8
Q ss_pred HHHHHHHHHhCCCCCceeEEEEEeeecCCccccCCCCceeee-ccccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEE
Q 012182 208 QLMQILSQELGCGTDDIASIELNICDTQPSCLGGANNEFIFS-GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVAL 286 (469)
Q Consensus 208 ~ll~~la~~~gV~~gDiv~~dl~l~d~~~~~~~Gl~~e~I~~-~~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~ 286 (469)
.+|..+-+++.+.+++.. -|+. .++++.| +++|-..|.++.|.+|.+...++ .-.+.++++.
T Consensus 107 ~ll~~~i~~~e~~~erv~-~Dl~------------SGDwlfGRGa~DMKsGlav~la~L~~fa~~~----~~~GNlLf~a 169 (553)
T COG4187 107 ALLDALIESLELREERVL-RDLE------------SGDWLFGRGALDMKSGLAVHLACLEEFAART----DRQGNLLFMA 169 (553)
T ss_pred HHHHHHHHhhccCHHHHh-hhhh------------ccCcccCCCchhhhhhhHHHHHHHHHHhhCC----CCCCcEEEEe
Confidence 455555566555544332 2332 2456665 46899999999999998876531 2345678899
Q ss_pred EeccccCcccccccCCc
Q 012182 287 FDNEEVGSDSYQGAGAP 303 (469)
Q Consensus 287 ~dqEEVGsrga~gA~s~ 303 (469)
.--||+-|+|..-|...
T Consensus 170 ~pdEE~~s~G~r~a~~~ 186 (553)
T COG4187 170 VPDEEVESRGMREARPA 186 (553)
T ss_pred ccchhhhcccHHHHHHH
Confidence 99999999999987643
No 107
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=64.63 E-value=8.2 Score=35.44 Aligned_cols=37 Identities=27% Similarity=0.525 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHCCCcccccCCcccccCCCeEEEEeCC
Q 012182 77 ATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNM 113 (469)
Q Consensus 77 av~~~~~~L~~~GF~~L~e~~~W~l~~g~kyf~~r~~ 113 (469)
.+..+.+.|+++||+++.+.+.|++++|+=++..+.+
T Consensus 52 nT~tl~~~L~~~G~~~I~~~~~~~~q~GDI~I~g~~g 88 (145)
T PF05382_consen 52 NTETLHDWLKKNGFKKISENVDWNLQRGDIFIWGRRG 88 (145)
T ss_pred CHHHHHHHHhhCCcEEeccCCcccccCCCEEEEcCCC
Confidence 5678889999999999999888999998866655543
No 108
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=64.41 E-value=8.3 Score=43.05 Aligned_cols=44 Identities=14% Similarity=-0.002 Sum_probs=33.4
Q ss_pred eeeeccccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEecccc
Q 012182 246 FIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEV 292 (469)
Q Consensus 246 ~I~~~~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEV 292 (469)
...|.++|++.|+.++|++++.++... . .....+.+++|..||.
T Consensus 263 V~~gG~~DG~~Gv~a~lea~~~l~~~~--~-~~~~~i~vv~~~~EEg 306 (591)
T PRK13590 263 VRNGGKYDGRLGIFVPMACVRELHRQG--R-RLPFGLEVVGFAEEEG 306 (591)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHcC--C-CCCCCeEEEEecCCcc
Confidence 356788999999999999999886431 1 1233567899999997
No 109
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=64.13 E-value=9 Score=39.29 Aligned_cols=46 Identities=13% Similarity=-0.094 Sum_probs=34.5
Q ss_pred eeeec-cccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccc
Q 012182 246 FIFSG-RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 297 (469)
Q Consensus 246 ~I~~~-~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga 297 (469)
+|.|+ ..|++.++.+++.|+..+ .. .....+.++++..||.|+.|.
T Consensus 83 ~iyGrG~~D~Kg~~aa~l~A~~~l-~~-----~~~~~i~~~~~~dEE~g~~~~ 129 (348)
T PRK04443 83 VLWGRGSVDAKGPLAAFAAAAARL-EA-----LVRARVSFVGAVEEEAPSSGG 129 (348)
T ss_pred eEEeecccccccHHHHHHHHHHHh-cc-----cCCCCEEEEEEcccccCChhH
Confidence 34443 579999999999999887 32 134457889999999997643
No 110
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=63.37 E-value=8.7 Score=42.91 Aligned_cols=59 Identities=10% Similarity=-0.067 Sum_probs=41.0
Q ss_pred eeeeccccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEecccc-----CcccccccCCcchHH
Q 012182 246 FIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEV-----GSDSYQGAGAPTMFQ 307 (469)
Q Consensus 246 ~I~~~~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEV-----Gsrga~gA~s~~~~d 307 (469)
.+.|.++|.++|+.++|+++..++... . .....+.+++|.+||- ++.|++.....+.++
T Consensus 263 V~~gG~~DG~~Gv~a~l~~~~~l~~~~--~-~~~~~i~vi~~~~EEg~rF~~~~~GS~~~~G~~~~~ 326 (591)
T PRK13799 263 VRNGGKYDGREGIFLAIACVKELHEQG--E-RLPFHFEVIAFAEEEGQRFKATFLGSGALIGDFNME 326 (591)
T ss_pred cCCCCccccHHHHHHHHHHHHHHHHcC--C-CCCCCeEEEEecCCCccCCCccccchHHHhCCChHH
Confidence 467899999999999999999886431 1 1233567888889996 555555554444433
No 111
>PRK08554 peptidase; Reviewed
Probab=63.13 E-value=9.6 Score=40.79 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=33.6
Q ss_pred eeee-ccccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccc
Q 012182 246 FIFS-GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDS 296 (469)
Q Consensus 246 ~I~~-~~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrg 296 (469)
.+.| ...|+..++.+++.|+..+... .......++++..||+|+.+
T Consensus 95 ~lyGrG~~DmKgg~aa~l~A~~~l~~~-----~~~~~i~l~~~~dEE~g~~~ 141 (438)
T PRK08554 95 KAYGRGSADDKGNVASVMLALKELSKE-----PLNGKVIFAFTGDEEIGGAM 141 (438)
T ss_pred EEEECCcccchHHHHHHHHHHHHHHhc-----CCCCCEEEEEEcccccCccc
Confidence 4544 4589999999999998887532 12335678999999998643
No 112
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=61.74 E-value=11 Score=38.84 Aligned_cols=47 Identities=11% Similarity=-0.009 Sum_probs=33.2
Q ss_pred ceeeeccc-cchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCc
Q 012182 245 EFIFSGRL-DNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGS 294 (469)
Q Consensus 245 e~I~~~~l-Dnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGs 294 (469)
+.+.|++- |++.++.+++.|+..+.... ......++++++..||.|.
T Consensus 90 g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~---~~~~~~i~~~~~~~EE~~~ 137 (375)
T PRK13009 90 GMLYGRGAADMKGSLAAFVVAAERFVAAH---PDHKGSIAFLITSDEEGPA 137 (375)
T ss_pred CEEEecCCccChHHHHHHHHHHHHHHHhc---CCCCceEEEEEEeeccccc
Confidence 45666655 99999999998887664321 0133467789999999864
No 113
>PLN02280 IAA-amino acid hydrolase
Probab=61.46 E-value=19 Score=39.14 Aligned_cols=78 Identities=10% Similarity=-0.055 Sum_probs=53.8
Q ss_pred cCHHHHHHHHHHHHHC-CCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechh--------hccccchhhhcCHHHHHH
Q 012182 376 TSGVTAFLFKEIAKLH-NLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIA--------QLSMHSVREICGTEDIDI 446 (469)
Q Consensus 376 t~~~~~~~l~~ia~~~-~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP--------~r~MHS~~E~~~~~Dv~~ 446 (469)
.++.+.+.+++++.+. |.+.-.. ....+|+|.+.+... ++|++..|+- ...+|++.|.++.+++..
T Consensus 387 n~~~l~~~~~~~a~~~~G~~~~~~---~~~~~g~tD~~~~~~--~vP~i~~glG~~~~~~G~~~~~Htp~e~id~~~L~~ 461 (478)
T PLN02280 387 NNDAMYEHVRKVAIDLLGPANFTV---VPPMMGAEDFSFYSQ--VVPAAFYYIGIRNETLGSTHTGHSPYFMIDEDVLPI 461 (478)
T ss_pred CCHHHHHHHHHHHHHhcCcccccc---CCCCeeechHHHHHh--hCCEEEEEEeecCCCCCCCCCCCCCCCcCCHHHHHH
Confidence 4677888888887653 5442111 112357776666654 4999977422 236899999999999999
Q ss_pred HHHHHHHHHhhc
Q 012182 447 AYRHFKAFYESF 458 (469)
Q Consensus 447 ~~~ll~af~~~~ 458 (469)
.++++..++..+
T Consensus 462 ~~~~~~~~~~~~ 473 (478)
T PLN02280 462 GAAVHAAIAERY 473 (478)
T ss_pred HHHHHHHHHHHH
Confidence 999998887654
No 114
>PRK07907 hypothetical protein; Provisional
Probab=60.77 E-value=12 Score=40.02 Aligned_cols=46 Identities=24% Similarity=0.148 Sum_probs=33.3
Q ss_pred eeee-ccccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccc
Q 012182 246 FIFS-GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSY 297 (469)
Q Consensus 246 ~I~~-~~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga 297 (469)
.|.| ...|++.++++++.|+..+ .. .....+.++++..||.|+.|.
T Consensus 116 ~lyGrG~~D~Kg~~aa~l~a~~~l-~~-----~~~~~i~~~~~~dEE~g~~g~ 162 (449)
T PRK07907 116 RLYGRGAADDKGGIAMHLAALRAL-GG-----DLPVGVTVFVEGEEEMGSPSL 162 (449)
T ss_pred EEEECCccCCcHHHHHHHHHHHHh-cc-----CCCCcEEEEEEcCcccCCccH
Confidence 3444 5689999999999999887 21 123346678889999998654
No 115
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=59.29 E-value=11 Score=40.74 Aligned_cols=50 Identities=18% Similarity=0.040 Sum_probs=35.0
Q ss_pred eeeec-cccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 012182 246 FIFSG-RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 298 (469)
Q Consensus 246 ~I~~~-~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~ 298 (469)
+|.|+ ..|+..++.+.+.|+..++... . .....+.+++...||+|+.|..
T Consensus 109 ~lyGRG~~D~Kg~~~a~l~a~~~l~~~~--~-~~~~~i~~~~~~dEE~g~~g~~ 159 (466)
T TIGR01886 109 RIYARGASDDKGPSLAAYYAMKILKELG--L-PPSKKIRFVVGTNEETGWVDMD 159 (466)
T ss_pred EEEecCccccchHHHHHHHHHHHHHHhC--C-CCCCCEEEEEECccccCcccHH
Confidence 44444 4899999999988888775321 1 1234577899999999987654
No 116
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=58.93 E-value=15 Score=38.24 Aligned_cols=49 Identities=14% Similarity=0.051 Sum_probs=33.3
Q ss_pred ceeeeccc-cchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCc
Q 012182 245 EFIFSGRL-DNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGS 294 (469)
Q Consensus 245 e~I~~~~l-Dnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGs 294 (469)
+.|.|++- |++.|+++++.|+..+...... ......+.++++..||+|+
T Consensus 94 g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~-~~~~~~i~~~~~~dEE~~~ 143 (373)
T TIGR01900 94 GILWGCGATDMKAGDAVMLHLAATLDGRAPE-TELKHDLTLIAYDCEEVAA 143 (373)
T ss_pred CEEEecCchhhhHHHHHHHHHHHHHhhhccc-cCCCCCEEEEEEecccccC
Confidence 45666665 9999999999988877321000 0123456789999999974
No 117
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=58.82 E-value=10 Score=40.74 Aligned_cols=46 Identities=20% Similarity=0.096 Sum_probs=33.4
Q ss_pred ccccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 012182 250 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 298 (469)
Q Consensus 250 ~~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~ 298 (469)
...|+..++.+++.|+..++... . .....+.++++..||+|+.|..
T Consensus 103 Ga~D~KG~laa~l~a~~~l~~~~--~-~~~~~i~~~~~~dEE~g~~g~~ 148 (447)
T TIGR01887 103 GTLDDKGPTIAALYAMKILKELG--L-KLKKKIRFIFGTDEETGWACID 148 (447)
T ss_pred CcccCcHHHHHHHHHHHHHHHcC--C-CCCCcEEEEEECCcccCcHhHH
Confidence 45799999999998887765321 1 1234567899999999987754
No 118
>PRK07906 hypothetical protein; Provisional
Probab=57.25 E-value=12 Score=39.52 Aligned_cols=43 Identities=16% Similarity=0.094 Sum_probs=31.0
Q ss_pred ccccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcc
Q 012182 250 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSD 295 (469)
Q Consensus 250 ~~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsr 295 (469)
...|+..+++++++|+..++... . .....+.++|+..||+|+.
T Consensus 102 G~~D~Kg~~a~~l~a~~~l~~~~--~-~~~~~i~~~~~~dEE~g~~ 144 (426)
T PRK07906 102 GAVDMKDMDAMMLAVVRHLARTG--R-RPPRDLVFAFVADEEAGGT 144 (426)
T ss_pred CccccchHHHHHHHHHHHHHHcC--C-CCCccEEEEEecCcccchh
Confidence 34699999999999988764321 0 1234577899999999763
No 119
>COG3655 Predicted transcriptional regulator [Transcription]
Probab=56.33 E-value=10 Score=30.78 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHhCCCCCceeEEEEE
Q 012182 206 HPQLMQILSQELGCGTDDIASIELN 230 (469)
Q Consensus 206 ~~~ll~~la~~~gV~~gDiv~~dl~ 230 (469)
....|+-|++.+.|+|||++.|+..
T Consensus 44 ~~~tL~~iC~~LeCqpgDiley~~d 68 (73)
T COG3655 44 RLSTLEKICKALECQPGDILEYVPD 68 (73)
T ss_pred eHHHHHHHHHHcCCChhheeEEecC
Confidence 4678889999999999999998754
No 120
>PRK06837 acetylornithine deacetylase; Provisional
Probab=55.27 E-value=15 Score=38.98 Aligned_cols=49 Identities=16% Similarity=-0.001 Sum_probs=33.1
Q ss_pred ceeeeccc-cchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccc
Q 012182 245 EFIFSGRL-DNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDS 296 (469)
Q Consensus 245 e~I~~~~l-Dnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrg 296 (469)
+.+.|++- |++.++.+++.|+..+..... .....++++++..||.|..|
T Consensus 129 g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~~---~~~~~i~~~~~~dEE~~g~g 178 (427)
T PRK06837 129 GWMYGRGAADMKAGLAAMLFALDALRAAGL---APAARVHFQSVIEEESTGNG 178 (427)
T ss_pred CEEEecCcccchHHHHHHHHHHHHHHHcCC---CCCCcEEEEEEeccccCCHh
Confidence 45666555 999999999988877753210 12334667888889987654
No 121
>PRK07079 hypothetical protein; Provisional
Probab=55.02 E-value=12 Score=40.14 Aligned_cols=51 Identities=20% Similarity=0.128 Sum_probs=34.1
Q ss_pred eeee-ccccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 012182 246 FIFS-GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 298 (469)
Q Consensus 246 ~I~~-~~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~ 298 (469)
+|.| ...|++.++++.+.|+..+.+.. . ......++++++..||+|+.|..
T Consensus 119 ~lyGRGa~DmKgg~aa~l~A~~~l~~~~-~-~~~~~~i~~~~~~dEE~g~~G~~ 170 (469)
T PRK07079 119 RWYGRGTADNKGQHTINLAALEQVLAAR-G-GRLGFNVKLLIEMGEEIGSPGLA 170 (469)
T ss_pred EEEEEeccCCcHHHHHHHHHHHHHHHhc-C-CCCCCCEEEEEECccccCCccHH
Confidence 3444 56899999998888877653210 0 01234578999999999976544
No 122
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=54.62 E-value=42 Score=28.72 Aligned_cols=51 Identities=20% Similarity=0.040 Sum_probs=38.5
Q ss_pred ccCHHHHHHHHHHHHHCCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhhcccc
Q 012182 375 ATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMH 433 (469)
Q Consensus 375 ~t~~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~r~MH 433 (469)
+|..-+...+++.|+++|++++.... + .+.+-....+...+.+|..++|+-
T Consensus 11 aSSs~la~km~~~a~~~gi~~~i~a~------~--~~e~~~~~~~~Dvill~PQv~~~~ 61 (99)
T cd05565 11 GTSGLLANALNKGAKERGVPLEAAAG------A--YGSHYDMIPDYDLVILAPQMASYY 61 (99)
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEEEe------e--HHHHHHhccCCCEEEEcChHHHHH
Confidence 78889999999999999999997652 1 222223335678999999888864
No 123
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=54.10 E-value=15 Score=38.60 Aligned_cols=40 Identities=23% Similarity=0.139 Sum_probs=28.9
Q ss_pred ccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCc
Q 012182 252 LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGS 294 (469)
Q Consensus 252 lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGs 294 (469)
+|++.|+.+++.|+..+..... .....++++++..||+|+
T Consensus 91 ~d~k~g~aa~l~a~~~l~~~~~---~~~~~i~~~~~~dEE~g~ 130 (413)
T PRK09290 91 FDGPLGVLAGLEAVRTLNERGI---RPRRPIEVVAFTNEEGSR 130 (413)
T ss_pred cCCHHHHHHHHHHHHHHHHcCC---CCCCCeEEEEEcCCcccc
Confidence 4778899999988887753211 123467899999999953
No 124
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=50.84 E-value=26 Score=37.70 Aligned_cols=69 Identities=13% Similarity=0.140 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHH-CCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEech--h--hccccchhhhcCHHHHHHHHHHH
Q 012182 377 SGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGI--A--QLSMHSVREICGTEDIDIAYRHF 451 (469)
Q Consensus 377 ~~~~~~~l~~ia~~-~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGi--P--~r~MHS~~E~~~~~Dv~~~~~ll 451 (469)
+..+...+.++.++ .|.+.+.... +|+|.+.+.. +++.+|+ | ...+|++.|-++++|+..+++++
T Consensus 374 ~~~lv~~l~~~~~~~~g~~~~~~~~-----~ggtda~~~~-----~~i~~Gp~~pG~~~~aH~~dE~v~i~~l~~~~~i~ 443 (447)
T TIGR01887 374 DDPLVQTLMKVYEKQTGDEGTPVAI-----GGGTYARLME-----NGVAFGALFPGEEDTMHQANEYIMIDDLLLATAIY 443 (447)
T ss_pred CCHHHHHHHHHHHHHhCCCCCeeEe-----cchhhhhhCC-----CcEEeCCCCCCCCCCccCCCcceeHHHHHHHHHHH
Confidence 44556666666554 4565554332 4667665532 3566774 2 34589999999999999999998
Q ss_pred HHHH
Q 012182 452 KAFY 455 (469)
Q Consensus 452 ~af~ 455 (469)
..++
T Consensus 444 ~~~~ 447 (447)
T TIGR01887 444 AEAI 447 (447)
T ss_pred HHhC
Confidence 8753
No 125
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=49.92 E-value=19 Score=37.94 Aligned_cols=41 Identities=22% Similarity=0.147 Sum_probs=29.9
Q ss_pred cccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCc
Q 012182 251 RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGS 294 (469)
Q Consensus 251 ~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGs 294 (469)
++|++.|+.+++.++..+..... .....+.++++..||.|.
T Consensus 91 ~~D~~~g~aa~l~a~~~l~~~~~---~~~~~i~~~~~~dEE~~~ 131 (414)
T PRK12890 91 RYDGILGVLAGLEVVAALREAGI---RPPHPLEVIAFTNEEGVR 131 (414)
T ss_pred CcCCHHHHHHHHHHHHHHHHcCC---CCCCCeEEEEEecccccc
Confidence 36899999999999887753210 124467899999999844
No 126
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=48.22 E-value=19 Score=37.66 Aligned_cols=39 Identities=18% Similarity=0.035 Sum_probs=28.3
Q ss_pred ccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccC
Q 012182 252 LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVG 293 (469)
Q Consensus 252 lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVG 293 (469)
+|++.|+.++++++..++.... .....+.++++..||.|
T Consensus 92 ~dg~~Gvaa~l~a~~~l~~~~~---~~~~~i~~~~~~dEE~~ 130 (412)
T PRK12892 92 YDGALGVVAGLEAARALNEHGI---ATRHPLDVVAWCDEEGS 130 (412)
T ss_pred ccchHHHHHHHHHHHHHHHcCC---CCCCCeEEEEecCcccc
Confidence 4778899999999888753210 12345788999999984
No 127
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=46.54 E-value=21 Score=37.37 Aligned_cols=39 Identities=15% Similarity=0.052 Sum_probs=28.6
Q ss_pred ccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccC
Q 012182 252 LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVG 293 (469)
Q Consensus 252 lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVG 293 (469)
+|++.|+.+++.|+..++.... .....+.++++..||.|
T Consensus 94 ~dgk~gvaa~l~a~~~l~~~~~---~~~~~v~~~~~~dEE~g 132 (412)
T PRK12893 94 FDGALGVLAALEVVRTLNDAGI---RTRRPIEVVSWTNEEGA 132 (412)
T ss_pred ccchhhHHHHHHHHHHHHHcCC---CCCCCeEEEEEcccccc
Confidence 4778899999988887753211 12446789999999986
No 128
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=45.83 E-value=34 Score=34.18 Aligned_cols=66 Identities=15% Similarity=0.137 Sum_probs=43.5
Q ss_pred HHHHHHHHHCCCCEeEEEeecCCCCCCChHHHHhcC-CCCcEEEechhhccccchhhhcCHHHHHHHHHHHHH
Q 012182 382 FLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASG-VGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKA 453 (469)
Q Consensus 382 ~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s~-~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll~a 453 (469)
+.=+++.++.+|.+ .+.|+-...||+..++.+++ .|||++.|.-|...-+ .....|++.+++.++.
T Consensus 187 e~n~al~~~~~i~~--lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~~~~----~~~~~~~~el~~~l~~ 253 (256)
T TIGR00715 187 ELEKALLREYRIDA--VVTKASGEQGGELEKVKAAEALGINVIRIARPQTIPG----VAIFDDISQLNQFVAR 253 (256)
T ss_pred HHHHHHHHHcCCCE--EEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCCCCC----CccCCCHHHHHHHHHH
Confidence 33366788888854 45576444467788888765 8999999999975221 2223566666666554
No 129
>PRK08737 acetylornithine deacetylase; Provisional
Probab=43.86 E-value=27 Score=36.27 Aligned_cols=39 Identities=13% Similarity=-0.027 Sum_probs=28.3
Q ss_pred eeeec-cccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCc
Q 012182 246 FIFSG-RLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGS 294 (469)
Q Consensus 246 ~I~~~-~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGs 294 (469)
.|.|+ +.|.+.++.+++.|+... ...+.++++..||+|+
T Consensus 94 ~lyGrGa~DmKg~~aa~l~a~~~~----------~~~v~~~~~~dEE~g~ 133 (364)
T PRK08737 94 RVIGLGVCDIKGAAAALLAAANAG----------DGDAAFLFSSDEEAND 133 (364)
T ss_pred EEEEECcccchHHHHHHHHHHHcc----------CCCEEEEEEcccccCc
Confidence 45554 456678888888887642 1247899999999987
No 130
>PF07167 PhaC_N: Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus; InterPro: IPR010941 This entry represents the central domain of the bacterial poly-beta-hydroxybutyrate polymerase (PhaC). Polyhydroxyalkanoic acids (PHAs) are carbon and energy reserve polymers produced in some bacteria when carbon sources are plentiful and another nutrient, such as nitrogen, phosphate, oxygen, or sulphur, becomes limiting. PHAs composed of monomeric units ranging from 3 to 14 carbons exist in nature. When the carbon source is exhausted, PHA is utilised by the bacterium. PhaC links D-(-)-3-hydroxybutyrl-CoA to an existing PHA molecule by the formation of an ester bond [].; GO: 0016746 transferase activity, transferring acyl groups, 0042619 poly-hydroxybutyrate biosynthetic process
Probab=37.14 E-value=33 Score=32.42 Aligned_cols=79 Identities=30% Similarity=0.430 Sum_probs=45.8
Q ss_pred CCChHHHH--HHHHHHHHHCCCcccccCCcc--cccCCCeEEEEeCCcEEEEEEeCCc--CcccEEEEEcCCCcEEEEEe
Q 012182 71 SWTPFHAT--AEAKRLLIDAGFELLNENDEW--ELKPGGGYFFTRNMSCLVAFAVGQK--YSVGRVIVRGSDGSFLHKLV 144 (469)
Q Consensus 71 spT~~hav--~~~~~~L~~~GF~~L~e~~~W--~l~~g~kyf~~r~~s~iiAf~vG~~--~~~GrV~~k~~~g~~~~~lv 144 (469)
|||-|-+. +..++.++..|=.-+.--.+| ++..|.. -...-+ -=||.+|++ -.||+|+++++ .++ ||
T Consensus 61 sPsNf~~tNP~~l~~~~et~G~sL~~G~~nl~~Dl~~~~~-~~~~~d--~~aF~vG~nvA~TpG~VV~rn~--l~e--Li 133 (172)
T PF07167_consen 61 SPSNFLLTNPEVLRRTIETGGESLVRGLRNLLEDLERGGG-KPSQTD--ESAFEVGENVATTPGKVVFRND--LME--LI 133 (172)
T ss_pred CCccccccCHHHHHHHHhCCCHHHHHHHHHHHHHHHhhCC-CCCCCC--chhhhccccccCCCceEEEECC--ceE--EE
Confidence 56666552 345555566665555544444 3444433 112222 358999987 35699999964 232 33
Q ss_pred e--------eCCCeEeeccc
Q 012182 145 K--------VKRPLLRVPTL 156 (469)
Q Consensus 145 ~--------~~~Pv~~Ip~L 156 (469)
. -.+|+++||-+
T Consensus 134 qY~P~T~~v~~~PlLIvPp~ 153 (172)
T PF07167_consen 134 QYAPTTEKVHARPLLIVPPW 153 (172)
T ss_pred eecCCCCCccceeEEeecch
Confidence 1 27899999854
No 131
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=33.90 E-value=41 Score=39.09 Aligned_cols=51 Identities=18% Similarity=-0.023 Sum_probs=39.6
Q ss_pred eccccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCcccccccCC
Q 012182 249 SGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGA 302 (469)
Q Consensus 249 ~~~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~gA~s 302 (469)
.++=||-.||.+++|+|+-+...+. ...+.+++.|.+.||-++.|+.|-..
T Consensus 159 ~gAtDDg~~va~mLe~lRv~s~~~~---~l~~~vVFLfNgaEE~~L~gsH~FIt 209 (834)
T KOG2194|consen 159 PGATDDGSGVASMLEALRVLSKSDK---LLTHSVVFLFNGAEESGLLGSHAFIT 209 (834)
T ss_pred CCCCcchhHHHHHHHHHHHhhcCCC---cccccEEEEecCcccchhhhccccee
Confidence 4556999999999999987754311 12567889999999999999887654
No 132
>PRK13004 peptidase; Reviewed
Probab=33.07 E-value=64 Score=33.67 Aligned_cols=46 Identities=15% Similarity=-0.117 Sum_probs=31.9
Q ss_pred ceeeeccc-cchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccC
Q 012182 245 EFIFSGRL-DNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVG 293 (469)
Q Consensus 245 e~I~~~~l-Dnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVG 293 (469)
+.+.|++- |++.++.+++.|+..+++.. . ......+++++..||.|
T Consensus 101 g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~--~-~~~~~i~~~~~~~EE~~ 147 (399)
T PRK13004 101 GRIYGRGTSDQKGGMASMVYAAKIIKDLG--L-DDEYTLYVTGTVQEEDC 147 (399)
T ss_pred CEEEeCCccccchHHHHHHHHHHHHHhcC--C-CCCCeEEEEEEcccccC
Confidence 34555554 99999999999988775421 1 12345678888899974
No 133
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=32.59 E-value=46 Score=35.07 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=28.7
Q ss_pred ccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccC
Q 012182 252 LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVG 293 (469)
Q Consensus 252 lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVG 293 (469)
.|+..|+.++++|++.++... . .....+.++++..||.|
T Consensus 94 ~D~k~Gv~a~l~a~~~l~~~~--~-~~~~~i~v~~~~dEE~~ 132 (414)
T PRK12891 94 YDGIYGVLGGLEVVRALNDAG--I-ETERPVDVVIWTNEEGS 132 (414)
T ss_pred ccchhhHHHHHHHHHHHHHcC--C-CCCCCeEEEEecccccC
Confidence 488999999999988876421 1 12345778999999985
No 134
>PLN02693 IAA-amino acid hydrolase
Probab=32.59 E-value=98 Score=33.18 Aligned_cols=79 Identities=13% Similarity=-0.055 Sum_probs=53.7
Q ss_pred ccCHHHHHHHHHHHHH-CCCCEeEEEeecCCCCCCChHHHHhcCCCCcEE--Eechh-----hccccchhhhcCHHHHHH
Q 012182 375 ATSGVTAFLFKEIAKL-HNLPTQEFVVRNDMGCGSTIGPILASGVGIRTV--DCGIA-----QLSMHSVREICGTEDIDI 446 (469)
Q Consensus 375 ~t~~~~~~~l~~ia~~-~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~ti--dIGiP-----~r~MHS~~E~~~~~Dv~~ 446 (469)
..|..+.+.+++.+++ .|.+..... ...+|+++..+.+. .+|++ -+|+- .-.+||+.+.++.+-+..
T Consensus 334 ~nd~~l~~~~~~~~~~~~G~~~~~~~---~~~~gseDf~~~~~--~vP~~~~~lG~~~~~~~~~~~H~~~f~~de~~l~~ 408 (437)
T PLN02693 334 VNNMDLYKQFKKVVRDLLGQEAFVEA---APEMGSEDFSYFAE--TIPGHFSLLGMQDETNGYASSHSPLYRINEDVLPY 408 (437)
T ss_pred cCCHHHHHHHHHHHHHhcCCcceeec---CCCceechHHHHHH--HhhhhEEEEecCCCCCCCCCCCCCCcCCCHHHHHH
Confidence 3467888999999988 476532211 11357776666554 67876 55542 236899999999998988
Q ss_pred HHHHHHHHHhhc
Q 012182 447 AYRHFKAFYESF 458 (469)
Q Consensus 447 ~~~ll~af~~~~ 458 (469)
.++++..++.++
T Consensus 409 ~~~~~~~~~~~~ 420 (437)
T PLN02693 409 GAAIHATMAVQY 420 (437)
T ss_pred HHHHHHHHHHHH
Confidence 888876666544
No 135
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=32.32 E-value=48 Score=35.45 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=41.3
Q ss_pred eeeccccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccC-cccccccCC
Q 012182 247 IFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVG-SDSYQGAGA 302 (469)
Q Consensus 247 I~~~~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVG-srga~gA~s 302 (469)
.+=+++|++....+.++|++.+..+. -....+.++.|-..|||| -.|+.+.+.
T Consensus 123 yaRGaqD~K~~~va~leAir~L~~~g---~kp~Rti~lsfvpDEEi~G~~Gm~~fa~ 176 (420)
T KOG2275|consen 123 YARGAQDMKCVGVAYLEAIRNLKASG---FKPKRTIHLSFVPDEEIGGHIGMKEFAK 176 (420)
T ss_pred EeccccchHhHHHHHHHHHHHHHhcC---CCcCceEEEEecCchhccCcchHHHHhh
Confidence 34467999999999999999886431 124567788999999998 788888776
No 136
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=31.43 E-value=60 Score=33.71 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=25.8
Q ss_pred CCCChHHHHhcCCCCcEEEechhhcc-ccchhhhc
Q 012182 406 CGSTIGPILASGVGIRTVDCGIAQLS-MHSVREIC 439 (469)
Q Consensus 406 gGgTig~i~~s~~Gi~tidIGiP~r~-MHS~~E~~ 439 (469)
.|+|.+.+.. ..|||++.+|.--.. +|++.|.+
T Consensus 339 ~g~tD~~~~~-~~gip~v~~Gpg~~~~aH~~dE~v 372 (373)
T TIGR01900 339 FGWTDVARFS-ALGIPALNFGAGDPLFAHKHDEQC 372 (373)
T ss_pred cCCccHHHHH-hcCCCEEEeCCCChhhccCCCCCC
Confidence 3667766665 469999999998764 89999976
No 137
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=31.15 E-value=3.3e+02 Score=27.52 Aligned_cols=121 Identities=11% Similarity=-0.069 Sum_probs=72.6
Q ss_pred hhccCceEEEEecCCCCCCCC-CccccCCCCCcCCCCceEEEcC-------CCCcccCHHHHHHHHHHHHHCCCCEeEEE
Q 012182 328 CTIRQSFLVSADMAHGVHPNF-SEKHEEHHRPEMQKGLVIKHNA-------NQRYATSGVTAFLFKEIAKLHNLPTQEFV 399 (469)
Q Consensus 328 ~~~~~s~~IS~DvahA~~Pn~-~~~~~~~~~~~LG~GpvIk~~~-------~~~y~t~~~~~~~l~~ia~~~~Ip~Q~~v 399 (469)
+..+++.+|.++.=|+. +| .+.. + +-.+|-|..+...+ .-.+-.|+.+.+.|.+.+.+.|++.....
T Consensus 45 ~~~~PDviVvi~sdH~~--~f~~d~~-p--~f~Ig~~~~~~~~~~g~~~~~~~~~~g~~eLA~~i~~~~~~~g~~~~~~~ 119 (279)
T PRK13365 45 AEQKADVLVFFYNDHCT--TFFFDLY-P--TFALGVGERFPVADEGAGLRPLPPIRGDVQLQAHIAECLVNDEFDLTVFQ 119 (279)
T ss_pred HHhCCCEEEEEcCchHH--HhccccC-C--ceEEEecccccccccccCCCCCCCCCCCHHHHHHHHHHHHHcCCCeeecc
Confidence 44688999888766663 22 1110 0 12233333331110 01356699999999999999999987542
Q ss_pred eecCCCCCCChHHHHhcC-----CCCcEEEechhhccccchhhhcCHHHHHHHHHHHHHHHhhcc
Q 012182 400 VRNDMGCGSTIGPILASG-----VGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFS 459 (469)
Q Consensus 400 ~r~D~~gGgTig~i~~s~-----~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll~af~~~~~ 459 (469)
.+ .--=||.-|+...+ ..+|+|-|++.+.. ++ +.+....+.+-+.+..++++++
T Consensus 120 ~~--~lDHG~~vPL~~l~~~~~~~~~pvVpi~in~~~-~p---~~~~~~~~~lG~al~~~i~~~~ 178 (279)
T PRK13365 120 DK--PIDHGCAAPLPLLWPHVPDWPGTVVPIAINVLQ-YP---LPTARRCYRLGQALRRAIESYP 178 (279)
T ss_pred CC--CCCchhhhHHHHhCCccccCCCCeEEEEEeccc-CC---CCCHHHHHHHHHHHHHHHHhcC
Confidence 11 01124544543332 23889999987653 22 3356788888899999988764
No 138
>PF09083 DUF1923: Domain of unknown function (DUF1923); InterPro: IPR015167 This domain is found in maltosyltransferases, adopting a secondary structure that consists of eight antiparallel beta-strands forming an open-sided 'jelly roll' Greek key beta-barrel. Their exact function is, as yet, unknown []. ; PDB: 1GJW_A 1GJU_A.
Probab=30.30 E-value=1.5e+02 Score=22.86 Aligned_cols=31 Identities=29% Similarity=0.516 Sum_probs=20.0
Q ss_pred EEEEeCC-cEEEEEEeCCcCcc---cEEEEEcCCCcEEE
Q 012182 107 YFFTRNM-SCLVAFAVGQKYSV---GRVIVRGSDGSFLH 141 (469)
Q Consensus 107 yf~~r~~-s~iiAf~vG~~~~~---GrV~~k~~~g~~~~ 141 (469)
|-.-+|+ +-+||.++|++++. |||. +|+.+.
T Consensus 14 ysyek~g~k~viaanvgke~ke~sggrvw----~g~w~~ 48 (64)
T PF09083_consen 14 YSYEKNGQKIVIAANVGKEPKEISGGRVW----NGRWSD 48 (64)
T ss_dssp EEEEETTEEEEEEEE-SSS-EEEEEEEEE----SSSEEE
T ss_pred EEeecCCcEEEEEeccCCCcccccCceee----cCcccc
Confidence 4445666 45689999998754 9997 567653
No 139
>PF08854 DUF1824: Domain of unknown function (DUF1824); InterPro: IPR014953 This uncharacterised group of proteins are principally found in cyanobacteria. ; PDB: 2Q22_B.
Probab=30.09 E-value=1e+02 Score=27.73 Aligned_cols=73 Identities=21% Similarity=0.131 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcC---------CChHHHHHHHHHHHHHCCCcccccCCcccccCCCeEEEEeCCcEEEEEEeCCcCccc
Q 012182 58 SSIVGDLLDYLNES---------WTPFHATAEAKRLLIDAGFELLNENDEWELKPGGGYFFTRNMSCLVAFAVGQKYSVG 128 (469)
Q Consensus 58 ~~~a~~~~~FL~~s---------pT~~hav~~~~~~L~~~GF~~L~e~~~W~l~~g~kyf~~r~~s~iiAf~vG~~~~~G 128 (469)
..+-+++..-++.| ||.-.|+...++.+++-|+..++..+ +. .+-|-+|+.-|.++ |
T Consensus 22 ~~Lr~~L~~~~~~sd~~~lGIcA~s~~~ai~ALr~~~~alg~~~~~~~~-~~-~~~GpVfLK~N~~t------------g 87 (125)
T PF08854_consen 22 KKLRQALRLLASNSDWFTLGICAPSAEEAIAALRSYEQALGYPPLEPLD-SP-PIEGPVFLKANQKT------------G 87 (125)
T ss_dssp HHHHHHHHHHHHTSSEEEEEEEESSHHHHHHHHHHHHHHTT--------------SSSEEEEEETTT-------------
T ss_pred HHHHHHHHHHHhccCceEEEeecCCHHHHHHHHHHHHHHcCCCccCCCC-CC-CCCCCEEEEecCCC------------C
Confidence 34556677767765 99999999999999999999976544 22 33456999888764 6
Q ss_pred EEEEEcCCCcEEEEEe
Q 012182 129 RVIVRGSDGSFLHKLV 144 (469)
Q Consensus 129 rV~~k~~~g~~~~~lv 144 (469)
.+.++...|..+-+||
T Consensus 88 ~~yv~~y~G~~rGVLi 103 (125)
T PF08854_consen 88 SCYVRSYTGLGRGVLI 103 (125)
T ss_dssp -EEEEE--S--BEEEE
T ss_pred cEEEeecCCccceEEE
Confidence 6666655555555565
No 140
>PRK10602 murein peptide amidase A; Provisional
Probab=28.32 E-value=3.8e+02 Score=26.56 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHCCCCEeEEEeecCCCCCCChHHHHhcCCCCcEEEechhhccccchhhhcCHHHHHHHHHHHHHHHh
Q 012182 377 SGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYE 456 (469)
Q Consensus 377 ~~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll~af~~ 456 (469)
++...+..+.+|+..+.|+=..+ ..+.+|+.+.... ..|||++.+=.|. +.+..+++...+-+..+++
T Consensus 165 ~~~~~~~~~~la~af~~~~~~~~---~y~~~Gs~~~~a~-~~giP~it~El~~--------~~~~~~v~~~~~~~~~~l~ 232 (237)
T PRK10602 165 DPRHSELGEWLAQAFELPLVTSV---GYETPGSFGSWCA-DLNLHCITAELPP--------ISADEASEKYLFAMANLLR 232 (237)
T ss_pred CccchHHHHHHHHHhCCCeEeec---CCCCCCcHHHHHH-HcCCcEEEEecCC--------cCcHHHHHHHHHHHHHHHh
Confidence 34455677888888888854432 2233455544433 4899999998885 6666777777777777776
Q ss_pred hcc
Q 012182 457 SFS 459 (469)
Q Consensus 457 ~~~ 459 (469)
...
T Consensus 233 ~~~ 235 (237)
T PRK10602 233 WHP 235 (237)
T ss_pred ccc
Confidence 543
No 141
>PRK03537 molybdate ABC transporter periplasmic molybdate-binding protein; Provisional
Probab=28.29 E-value=74 Score=29.76 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHCCCcc
Q 012182 58 SSIVGDLLDYLNESWTPFHATAEAKRLLIDAGFEL 92 (469)
Q Consensus 58 ~~~a~~~~~FL~~spT~~hav~~~~~~L~~~GF~~ 92 (469)
.+.|++|++||.. .++++.|++.||..
T Consensus 158 ~~~A~~F~~fl~s--------~eaq~i~~~~Gf~~ 184 (188)
T PRK03537 158 SPQAKRLADFLLS--------PKGQAILAQYGFSP 184 (188)
T ss_pred hHHHHHHHHHHhC--------HHHHHHHHHcCCCC
Confidence 3689999999955 57899999999975
No 142
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=27.95 E-value=62 Score=33.84 Aligned_cols=46 Identities=17% Similarity=0.017 Sum_probs=33.6
Q ss_pred ccccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 012182 250 GRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 298 (469)
Q Consensus 250 ~~lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~ 298 (469)
...|+.-+.++.+.|+..+.... . .....+.++++..||+|+.+..
T Consensus 113 G~~D~KG~~~a~l~A~~~l~~~~--~-~~~~~v~~~~~~dEE~g~~~~~ 158 (409)
T COG0624 113 GAADMKGGLAAALYALSALKAAG--G-ELPGDVRLLFTADEESGGAGGK 158 (409)
T ss_pred CccccchHHHHHHHHHHHHHHhC--C-CCCeEEEEEEEeccccCCcchH
Confidence 45699999999998888775310 0 1345677899999999986654
No 143
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=26.84 E-value=1.7e+02 Score=29.54 Aligned_cols=63 Identities=21% Similarity=0.284 Sum_probs=40.4
Q ss_pred HHHHHHCCCCEeEEEeecCCCCCCChHHHHhcC-CCCcEEEechhhccccchhhhcCHHHHHHHHHHHH
Q 012182 385 KEIAKLHNLPTQEFVVRNDMGCGSTIGPILASG-VGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFK 452 (469)
Q Consensus 385 ~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s~-~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll~ 452 (469)
+.+-++.+|.+ -+.|+-...|||-+++.+++ +|||+|.|--| .--+...-+..|+...+..+.
T Consensus 189 ~all~q~~id~--vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp---~~~~~~~~~v~~~~~~l~~~~ 252 (257)
T COG2099 189 KALLEQYRIDV--VVTKNSGGAGGTYEKIEAARELGIPVIMIERP---IDYPAGFGDVTDLDAALAQLR 252 (257)
T ss_pred HHHHHHhCCCE--EEEccCCcccCcHHHHHHHHHcCCcEEEEecC---CcCCcccchhhHHHHHHHHHH
Confidence 34556777754 34576555578888888755 99999999999 333444444555555444443
No 144
>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.
Probab=26.51 E-value=3.4e+02 Score=27.44 Aligned_cols=78 Identities=15% Similarity=0.040 Sum_probs=52.0
Q ss_pred cccCHHHHHHHHHHHHHCCCCEeEEEeecCCCCCCChHHHHh--cCCCCcEEEechhhccccchhhhcCHHHHHHHHHHH
Q 012182 374 YATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILA--SGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHF 451 (469)
Q Consensus 374 y~t~~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~--s~~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll 451 (469)
+-.|+.+.+.|.+.+++.||+........-.--=||.-|... -...+|+|.|++++. ++ +..+.+.+-+.+
T Consensus 92 ~~gd~eLA~~i~~~~~~~gi~~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~is~~~~-~~------~~~~~~~lG~al 164 (282)
T TIGR02298 92 YPGNPALGQLIADEAQEHGVKTLAHQVPSLGLEYGTLVPMRYMNEDGHFKVVSIAAWCT-VH------DIEESRALGEAI 164 (282)
T ss_pred CCCCHHHHHHHHHHHHHCCCceeeccCCCCCCCeehHhHHHHhCCCCCCcEEEEeecCC-CC------CHHHHHHHHHHH
Confidence 446999999999999999999863211100001255444433 336799999999865 33 456667888888
Q ss_pred HHHHhhc
Q 012182 452 KAFYESF 458 (469)
Q Consensus 452 ~af~~~~ 458 (469)
..++++.
T Consensus 165 ~~~i~~~ 171 (282)
T TIGR02298 165 RKAIEQS 171 (282)
T ss_pred HHHHHhc
Confidence 8887764
No 145
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=24.62 E-value=67 Score=32.21 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=37.8
Q ss_pred CCCh-HHHHhcCCCCcEEEechhhccccchhhhcCHHHHHHHHHHHHHHHhhccc
Q 012182 407 GSTI-GPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFSS 460 (469)
Q Consensus 407 GgTi-g~i~~s~~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll~af~~~~~~ 460 (469)
+||+ |.+-+.-.|||+|.++.-.++-+-.+. .|++.+.++..++++.+-.
T Consensus 104 SGTVaaA~Ea~~~GipsIA~S~~~~~~~~~~~----~~~e~A~~~~~~lv~~l~~ 154 (252)
T COG0496 104 SGTVAAAMEAALLGIPAIAISLAYREAFGKQD----VDFETAAKVARALVEALLA 154 (252)
T ss_pred eehHHHHHHHHHcCccceeeeehhcccccccc----ccHHHHHHHHHHHHHHHHh
Confidence 4885 678888899999999988776554433 5788888888888776543
No 146
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=23.51 E-value=80 Score=32.44 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=22.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHCCCcc
Q 012182 61 VGDLLDYLNESWTPFHATAEAKRLLIDAGFEL 92 (469)
Q Consensus 61 a~~~~~FL~~spT~~hav~~~~~~L~~~GF~~ 92 (469)
..+++..=.-|.-+..+++++.++|++.||.-
T Consensus 5 ~~~L~~ips~s~~E~~~a~~l~~~l~~~g~~~ 36 (363)
T TIGR01891 5 RRHLHEHPELSFEEFKTSSLIAEALESLGIEV 36 (363)
T ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHHcCCce
Confidence 33444333334446889999999999999964
No 147
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=21.15 E-value=72 Score=34.30 Aligned_cols=45 Identities=18% Similarity=0.050 Sum_probs=32.0
Q ss_pred ccchhcHHHHHHHHHHcCCCCCCCCCCCceEEEEEEeccccCccccc
Q 012182 252 LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 298 (469)
Q Consensus 252 lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~v~~dqEEVGsrga~ 298 (469)
.||++|...++.+|..+.....++ ......++++..||+|.||+.
T Consensus 143 aD~kAGia~i~~al~~~~~~~~~i--~h~~i~~g~s~~Ee~g~rg~~ 187 (414)
T COG2195 143 ADDKAGIAEIMTALSVLREKHPEI--PHGGIRGGFSPDEEIGGRGAA 187 (414)
T ss_pred CcchhHHHHHHHHHHHHhhcCccc--cccCeEEEecchHHhhhhhhh
Confidence 688899999888887665320011 233467899999999998765
No 148
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=20.82 E-value=85 Score=26.61 Aligned_cols=21 Identities=43% Similarity=0.330 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHCCCCEeEE
Q 012182 378 GVTAFLFKEIAKLHNLPTQEF 398 (469)
Q Consensus 378 ~~~~~~l~~ia~~~~Ip~Q~~ 398 (469)
..+.+.|.+.|+++|||.|.-
T Consensus 31 G~iAe~II~~Ake~~Vpi~ed 51 (92)
T COG2257 31 GEIAEKIIEKAKEHGVPIQED 51 (92)
T ss_pred hHHHHHHHHHHHHcCCCcccC
Confidence 456799999999999999974
No 149
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=20.68 E-value=5.8e+02 Score=25.41 Aligned_cols=78 Identities=14% Similarity=-0.066 Sum_probs=50.4
Q ss_pred cccCHHHHHHHHHHHHHCCCCEeEEEeecCCCCCCChHHHHhc--CCCCcEEEechhhccccchhhhcCHHHHHHHHHHH
Q 012182 374 YATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILAS--GVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHF 451 (469)
Q Consensus 374 y~t~~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s--~~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll 451 (469)
+-.|++++..|.+.++++||++.....+.-.--=||.-|+... ...+|++.+++++. + .+....+.+-+.+
T Consensus 83 ~~g~~eLA~~i~~~~~~~gi~~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~vs~~~~-~------~~~~~~~~lG~al 155 (268)
T cd07371 83 INVDVELAEACVEEGRKAGLVTRMMRYPRFPIDTGTITALTLMRPGTDIPPVVISANNL-Y------LSGEETEGEMDLA 155 (268)
T ss_pred CCCCHHHHHHHHHHHHHCCCcEEEecCCCCCCCchhHHHHHHhcCCCCCCeEEEEecCc-C------CCHHHHHHHHHHH
Confidence 3459999999999999999998752111100112555555443 36789999998766 2 3455666777777
Q ss_pred HHHHhhc
Q 012182 452 KAFYESF 458 (469)
Q Consensus 452 ~af~~~~ 458 (469)
.+.++..
T Consensus 156 ~~~l~~~ 162 (268)
T cd07371 156 GKATRDA 162 (268)
T ss_pred HHHHHHc
Confidence 6666554
No 150
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=20.54 E-value=4.3e+02 Score=26.66 Aligned_cols=121 Identities=10% Similarity=0.006 Sum_probs=69.6
Q ss_pred hhccCceEEEEecCCCCCCCC-CccccCCCCCcCCCCceEEEcCC-------CCcccCHHHHHHHHHHHHHCCCCEeEEE
Q 012182 328 CTIRQSFLVSADMAHGVHPNF-SEKHEEHHRPEMQKGLVIKHNAN-------QRYATSGVTAFLFKEIAKLHNLPTQEFV 399 (469)
Q Consensus 328 ~~~~~s~~IS~DvahA~~Pn~-~~~~~~~~~~~LG~GpvIk~~~~-------~~y~t~~~~~~~l~~ia~~~~Ip~Q~~v 399 (469)
+..+++.+|.++.=|+.. | .+.. + +-.+|.|..+...+. ..+..|+.+.+.|.+.+.+.|+++....
T Consensus 45 ~~~~PD~iVvi~~dH~~~--f~~d~~-p--~f~Ig~~~~~~~~d~~~~~~~~~~~~g~~~LA~~i~~~~~~~g~~~~~~~ 119 (277)
T cd07950 45 AEQKPDVLFMVYNDHVTS--FFFDHY-S--AFALGVGDSYEVADEGGGPRDLPPIRGHAALAQHIAESLVADEFDLTFFQ 119 (277)
T ss_pred HHhCCCEEEEEcCcHHHH--hccccC-C--cEEEEecccccccccccCCccCCCCCCCHHHHHHHHHHHHhcCCCeeecc
Confidence 446788888887555532 2 1100 0 112233333322111 2356799999999999999999987533
Q ss_pred eecCCCCCCChHHHHhcC-----CCCcEEEechhhccccchhhhcCHHHHHHHHHHHHHHHhhcc
Q 012182 400 VRNDMGCGSTIGPILASG-----VGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFS 459 (469)
Q Consensus 400 ~r~D~~gGgTig~i~~s~-----~Gi~tidIGiP~r~MHS~~E~~~~~Dv~~~~~ll~af~~~~~ 459 (469)
.+ . --=||.-|....+ ..+|+|-|.+++... | +-+....+.+-+.+..++++++
T Consensus 120 ~~-~-lDHG~~vPL~~l~p~~~~~~~~vVpi~~~~~~~-~---l~~~~~~~~lG~al~~~i~~~~ 178 (277)
T cd07950 120 DK-P-LDHGCFSPLSLLLPHEDGWPVKVVPLQVGVLQF-P---LPTARRCYKLGQALRRAIESYP 178 (277)
T ss_pred CC-C-CCceeeeeHHHhCcccccCCCceEEEEEEeEec-C---CCCHHHHHHHHHHHHHHHHhcC
Confidence 21 0 1113333322221 236788888887632 2 1256778888888999988764
Done!