Query 012183
Match_columns 469
No_of_seqs 118 out of 235
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 04:23:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012183.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012183hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u9w_A Leukotriene A-4 hydrola 75.0 23 0.00079 37.9 12.5 90 33-138 17-106 (608)
2 2x3c_A Toxic extracellular end 57.3 21 0.00072 35.8 7.2 17 50-66 38-54 (343)
3 3q48_A Chaperone CUPB2; IG fol 33.3 22 0.00075 34.2 2.8 57 1-63 1-57 (257)
4 2k6w_A Putative uncharacterize 31.9 1.4E+02 0.0048 25.1 7.4 27 111-137 80-106 (120)
5 2g30_A AP-2 complex subunit be 27.3 70 0.0024 30.6 5.2 85 27-145 30-118 (258)
6 2xdt_A Endoplasmic reticulum a 26.8 6E+02 0.02 28.3 13.5 95 29-138 10-108 (897)
7 2qsv_A Uncharacterized protein 25.2 85 0.0029 28.8 5.2 23 116-138 162-185 (220)
8 1x9l_A CUI-DR1885; copper bind 14.5 1.6E+02 0.0056 25.7 4.3 26 111-136 105-130 (149)
9 2xq0_A LTA-4 hydrolase, leukot 14.3 1.1E+03 0.037 25.0 12.1 91 31-139 27-121 (632)
10 1yew_A Particulate methane mon 13.4 7.6E+02 0.026 24.9 9.2 83 37-139 255-337 (382)
No 1
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ...
Probab=75.04 E-value=23 Score=37.93 Aligned_cols=90 Identities=11% Similarity=0.141 Sum_probs=57.6
Q ss_pred EEeeEEEEEEcCCCeEEEEEEEEEEeCCCCCccEEEEEcCCCcccceeEEEEEEccCccccceeeeeeeeeecCCCCCCC
Q 012183 33 RINNAERRIDLSTHIVKVFLTLKVENTGKTSASEILLAFPPTQVDHLAFLEALAATGKKKKKTYVSLAVKPTQLPDAPNE 112 (469)
Q Consensus 33 ~n~~v~R~idL~~~~vk~~~~i~~kN~g~~p~~~y~~~l~~~~~~~ls~i~a~~~~~~~k~~~~~~l~v~~~~~~~~~~~ 112 (469)
+.-++.=.+|+.+....-+++|+++...+ ..++..+-. ..+..-++..++.+ +...... .....
T Consensus 17 ~Hy~L~l~vD~~~~~~~G~v~I~~~~~~~-~~~~i~Ld~-----~~L~I~~V~v~g~~--------~~~~~~~--~~~~~ 80 (608)
T 3u9w_A 17 KHLHLRCSVDFTRRTLTGTAALTVQSQED-NLRSLVLDT-----KDLTIEKVVINGQE--------VKYALGE--RQSYK 80 (608)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEEECST-TEEEEEEEE-----SSCEEEEEEETTEE--------CCEEECC--CCGGG
T ss_pred eEEEEEEEEECCCCEEEEEEEEEEEECCC-CCCEEEEEC-----CCCEEEEEEECCEE--------cceeccc--ccccc
Confidence 44566778999999999889999987543 235554432 23444455554322 2221111 01123
Q ss_pred ceEEEEEeCCCCCCCCeEEEEEEEEE
Q 012183 113 TNYYTIVLANPLNTGETATLEILYIL 138 (469)
Q Consensus 113 ~~~y~I~Lp~pl~~~~~~~l~v~~~~ 138 (469)
.....|+||.++.+|++.+|.|+|..
T Consensus 81 ~~~l~I~l~~~l~~g~~~~l~I~y~~ 106 (608)
T 3u9w_A 81 GSPMEISLPIALSKNQEIVIEISFET 106 (608)
T ss_dssp CEEEEEEEEEEECTTCEEEEEEEEEC
T ss_pred CceEEEEcCCCCCCCCEEEEEEEEEE
Confidence 45689999999999999999999864
No 2
>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A
Probab=57.30 E-value=21 Score=35.80 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=13.3
Q ss_pred EEEEEEEEeCCCCCccE
Q 012183 50 VFLTLKVENTGKTSASE 66 (469)
Q Consensus 50 ~~~~i~~kN~g~~p~~~ 66 (469)
..++++|+|.|+++.+-
T Consensus 38 ~~vk~tvtN~g~~~~~l 54 (343)
T 2x3c_A 38 VRVNLTLTNTGDKPIRL 54 (343)
T ss_dssp CEEEEEEEECSSSCEEE
T ss_pred eEEEEEEEeCCCCceEe
Confidence 45568899999998763
No 3
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=33.33 E-value=22 Score=34.15 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=16.6
Q ss_pred CcccchhhHHHHHHHHHHHHHHhhccCCCCCeEEeeEEEEEEcCCCeEEEEEEEEEEeCCCCC
Q 012183 1 MEALLRPRIMLSLTIILIPIFLFISGASSHQIRINNAERRIDLSTHIVKVFLTLKVENTGKTS 63 (469)
Q Consensus 1 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~v~R~idL~~~~vk~~~~i~~kN~g~~p 63 (469)
|.+.|+.+++...+++++++++ +.++ .+.+... -+|.|-=.++ + .+.+.++|.|+.|
T Consensus 1 ~~~~~~~~~~~~~~l~~~l~~~-~~~a-~A~v~i~-~TRvIy~~~~--k-~~sl~l~N~~~~P 57 (257)
T 3q48_A 1 MAPLMHRFHSFVAASAVAIALC-VGTA-HAGLIAQ-GTRVVFPASE--R-EVTLRVSNTSGTP 57 (257)
T ss_dssp --------------------------------CCS-CSEEEEETTC--S-EEEEEEEECSSSC
T ss_pred CCcccccchHHHHHHHHHHHHH-HHHh-ceeEEEc-ceEEEEeCCC--c-EEEEEEEeCCCCe
Confidence 6788888876555444443332 2211 2233322 3576655554 2 3678999987754
No 4
>2k6w_A Putative uncharacterized protein TTHA1943; PCUA, copper transfer protein, metal transport; NMR {Thermus thermophilus} PDB: 2k6y_A 2k6z_A 2k70_A
Probab=31.93 E-value=1.4e+02 Score=25.09 Aligned_cols=27 Identities=26% Similarity=0.578 Sum_probs=21.1
Q ss_pred CCceEEEEEeCCCCCCCCeEEEEEEEE
Q 012183 111 NETNYYTIVLANPLNTGETATLEILYI 137 (469)
Q Consensus 111 ~~~~~y~I~Lp~pl~~~~~~~l~v~~~ 137 (469)
.+.+.-...|..|+++|+++.+++.+-
T Consensus 80 GG~HvML~gl~~~l~~G~~v~ltL~Fe 106 (120)
T 2k6w_A 80 GGYHFMLLGLKRPLKAGEEVELDLLFA 106 (120)
T ss_dssp TTEEEEEEEESSCBCTTCEEEEEEEET
T ss_pred CceEEEEeCCCCCCCCCCEEEEEEEEC
Confidence 345666778899999999988887653
No 5
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=27.29 E-value=70 Score=30.64 Aligned_cols=85 Identities=9% Similarity=0.186 Sum_probs=54.9
Q ss_pred CCCCCeEEeeEEEEEEcCCCeEEEE----EEEEEEeCCCCCccEEEEEcCCCcccceeEEEEEEccCccccceeeeeeee
Q 012183 27 ASSHQIRINNAERRIDLSTHIVKVF----LTLKVENTGKTSASEILLAFPPTQVDHLAFLEALAATGKKKKKTYVSLAVK 102 (469)
Q Consensus 27 ~~~~~~~n~~v~R~idL~~~~vk~~----~~i~~kN~g~~p~~~y~~~l~~~~~~~ls~i~a~~~~~~~k~~~~~~l~v~ 102 (469)
++...|-..+=-+-++++.++.|.. .++++.|....|.+.|.+.+...- +-+.
T Consensus 30 ~p~~~~l~~~~g~GLeI~g~f~r~~g~i~l~l~~~N~s~~~is~faIQfNkNs-----------------------FGL~ 86 (258)
T 2g30_A 30 APKAVWLPAVKAKGLEISGTFTHRQGHIYMEMNFTNKALQHMTDFAIQFNKNS-----------------------FGVI 86 (258)
T ss_dssp CCCEEEECGGGTTTEEEEEEEEEETTEEEEEEEEEECSSSCBCCCEEEECCBT-----------------------TCCE
T ss_pred CchhhcccccCCCcEEEEEEEEEeCCEEEEEEEEecCCccceeeeEEEEcccc-----------------------cCcc
Confidence 3344666555445566666666655 899999998888887776664321 1111
Q ss_pred eecCCCCCCCceEEEEEeCCCCCCCCeEEEEEEEEEccccccc
Q 012183 103 PTQLPDAPNETNYYTIVLANPLNTGETATLEILYILTHSLEPF 145 (469)
Q Consensus 103 ~~~~~~~~~~~~~y~I~Lp~pl~~~~~~~l~v~~~~~~~~~P~ 145 (469)
... -..+|.||+||++.+..|-..+++.....
T Consensus 87 p~~-----------~~~~~~~L~pgqs~~v~lpl~~~~~~~~~ 118 (258)
T 2g30_A 87 PST-----------PLAIHTPLMPNQSIDVSLPLNTLGPVMKM 118 (258)
T ss_dssp ESS-----------CCCCCSCBCTTCEEEEEEEEESCSCBCCC
T ss_pred cCc-----------cccCCCccCCCCcEEEEEeeecCCcccCC
Confidence 111 01357889999999999988887766544
No 6
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=26.78 E-value=6e+02 Score=28.31 Aligned_cols=95 Identities=17% Similarity=0.139 Sum_probs=53.2
Q ss_pred CCCeEEeeEEEE--EEcCCCeEEEEEEEEEEeCCCCCccEEEEEcCCCcccceeEEEEEEccCccccceeeee--eeeee
Q 012183 29 SHQIRINNAERR--IDLSTHIVKVFLTLKVENTGKTSASEILLAFPPTQVDHLAFLEALAATGKKKKKTYVSL--AVKPT 104 (469)
Q Consensus 29 ~~~~~n~~v~R~--idL~~~~vk~~~~i~~kN~g~~p~~~y~~~l~~~~~~~ls~i~a~~~~~~~k~~~~~~l--~v~~~ 104 (469)
|..++-.++.=. +|+++....-+++|+++.. ++.+...+.. .++..-++.+.+..++ .+ .+...
T Consensus 10 p~~~~p~hY~l~L~~d~~~~~f~G~v~I~~~~~--~~~~~I~L~~-----~~l~I~~v~v~~~~~~-----~~~~~~~~~ 77 (897)
T 2xdt_A 10 PEYVIPVHYDLLIHANLTTLTFWGTTKVEITAS--QPTSTIILHS-----HHLQISRATLRKGAGE-----RLSEEPLQV 77 (897)
T ss_dssp CSSEEEEEEEEEEEEETTTTEEEEEEEEEEEES--SCEEEEEEEC-----SSCEEEEEEEEEC---------CEEEECEE
T ss_pred CCCcEeeEEEEEEEEecCCCeEEEEEEEEEEEE--cCCCEEEEEe-----CCCEEEEEEEEecCCc-----cccccccee
Confidence 445555554433 4777777777777777764 4556555543 2344444444321101 12 22111
Q ss_pred cCCCCCCCceEEEEEeCCCCCCCCeEEEEEEEEE
Q 012183 105 QLPDAPNETNYYTIVLANPLNTGETATLEILYIL 138 (469)
Q Consensus 105 ~~~~~~~~~~~y~I~Lp~pl~~~~~~~l~v~~~~ 138 (469)
. . ......+.|.||+|+++|++.+|.|+|.-
T Consensus 78 ~-~--~~~~~~l~i~l~~~L~~g~~~~L~i~y~g 108 (897)
T 2xdt_A 78 L-E--HPRQEQIALLAPEPLLVGLPYTVVIHYAG 108 (897)
T ss_dssp E-E--ETTTTEEEEEEEEEECTTCCEEEEEEEEE
T ss_pred E-E--cCCCcEEEEEeCCccCCCCEEEEEEEEEE
Confidence 1 0 01234678999999999999999988774
No 7
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=25.24 E-value=85 Score=28.79 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=16.9
Q ss_pred EEEEeC-CCCCCCCeEEEEEEEEE
Q 012183 116 YTIVLA-NPLNTGETATLEILYIL 138 (469)
Q Consensus 116 y~I~Lp-~pl~~~~~~~l~v~~~~ 138 (469)
..+.++ .|++||++..|.|.|--
T Consensus 162 t~~~~~~~~i~PGe~~~i~v~~~~ 185 (220)
T 2qsv_A 162 LTAVPDRTEIKPGGSTLLRIAVDP 185 (220)
T ss_dssp EEEEESCSEECTTCEEEEEEEECH
T ss_pred EeeecCCccCCCCCEEEEEEEEec
Confidence 455554 46999999998888753
No 8
>1x9l_A CUI-DR1885; copper binding protein, solution ST holo-form, structural proteomics in europe, spine, structur genomics; NMR {Deinococcus radiodurans} SCOP: b.2.10.1 PDB: 2jqa_A
Probab=14.48 E-value=1.6e+02 Score=25.70 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=20.7
Q ss_pred CCceEEEEEeCCCCCCCCeEEEEEEE
Q 012183 111 NETNYYTIVLANPLNTGETATLEILY 136 (469)
Q Consensus 111 ~~~~~y~I~Lp~pl~~~~~~~l~v~~ 136 (469)
.+.+.-...|.+|+++|+++.+++.+
T Consensus 105 GG~HvML~gL~~~l~~G~~v~lTL~F 130 (149)
T 1x9l_A 105 DGDHVMLMGLKRPLKVGETVNITLKA 130 (149)
T ss_dssp TSSEEEEEEECSCCCTTEEEEEEECB
T ss_pred CceEEEEeCCCCCCCCCCEEEEEEEE
Confidence 45667778899999999988887654
No 9
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Probab=14.34 E-value=1.1e+03 Score=24.95 Aligned_cols=91 Identities=13% Similarity=0.098 Sum_probs=50.3
Q ss_pred CeEEee--EEEEEEcCCCeEEEEEEEEEEeCCCC--CccEEEEEcCCCcccceeEEEEEEccCccccceeeeeeeeeecC
Q 012183 31 QIRINN--AERRIDLSTHIVKVFLTLKVENTGKT--SASEILLAFPPTQVDHLAFLEALAATGKKKKKTYVSLAVKPTQL 106 (469)
Q Consensus 31 ~~~n~~--v~R~idL~~~~vk~~~~i~~kN~g~~--p~~~y~~~l~~~~~~~ls~i~a~~~~~~~k~~~~~~l~v~~~~~ 106 (469)
.+...+ +.=.+|+.+..+.-+++|+++...+. +.++..+-. ..+..-++..++ + .+......
T Consensus 27 ~~~~~hY~L~l~~d~~~~~~~G~v~I~~~~~~~~~~~~~~i~Ld~-----~~l~I~~v~v~g-~-------~~~~~~~~- 92 (632)
T 2xq0_A 27 DFAVLHTDLNLSVSFEKSAISGSVTFQLKKLHEGKNKSDELHLDT-----SYLDVQEVHIDG-S-------KADFQIEQ- 92 (632)
T ss_dssp GEEEEEEEEEEEEETTTTEEEEEEEEEEEECC---CCCCEEEEBC-----SSEEEEEEEETT-E-------ECCEEECC-
T ss_pred ceeEEEEEEEEEEeCCCCEEEEEEEEEEEECCCCCCcCcEEEEEc-----cCCEEEEEEECC-e-------ecceEEcc-
Confidence 444444 44456777888888888888875432 145555533 234444555532 1 12221111
Q ss_pred CCCCCCceEEEEEeCCCCCCCCeEEEEEEEEEc
Q 012183 107 PDAPNETNYYTIVLANPLNTGETATLEILYILT 139 (469)
Q Consensus 107 ~~~~~~~~~y~I~Lp~pl~~~~~~~l~v~~~~~ 139 (469)
..+.....+.|.||.| |++.+|.|.|.-.
T Consensus 93 -~~~~~~~~l~I~l~~~---g~~~~l~I~Y~g~ 121 (632)
T 2xq0_A 93 -RKEPLGSRLVINNASC---NDNFTLNIQFRTT 121 (632)
T ss_dssp -CBTTTBCCEEEECCCS---SSEEEEEEEEEEC
T ss_pred -cccccCcEEEEEecCC---CCEEEEEEEEeee
Confidence 0011224578999987 8889999988654
No 10
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=13.37 E-value=7.6e+02 Score=24.88 Aligned_cols=83 Identities=13% Similarity=0.174 Sum_probs=44.8
Q ss_pred EEEEEEcCCCeEEEEEEEEEEeCCCCCccEEEEEcCCCcccceeEEEEEEccCccccceeeeeeeeeecCCCCCCCceEE
Q 012183 37 AERRIDLSTHIVKVFLTLKVENTGKTSASEILLAFPPTQVDHLAFLEALAATGKKKKKTYVSLAVKPTQLPDAPNETNYY 116 (469)
Q Consensus 37 v~R~idL~~~~vk~~~~i~~kN~g~~p~~~y~~~l~~~~~~~ls~i~a~~~~~~~k~~~~~~l~v~~~~~~~~~~~~~~y 116 (469)
..-+.++-+.-.+ .+++++|.|++|+.-=-| ...++.++.+.....+ .. .+- +.+. + .-.
T Consensus 255 ~~A~Y~vpgR~l~--~~~~VtN~g~~pvrlgeF-----~tA~vrFln~~~~~~~-~~---~P~--~lla----~---~gL 314 (382)
T 1yew_A 255 EDATYRVPGRAMR--MKLTITNHGNSPIRLGEF-----YTASVRFLDSDVYKDT-TG---YPE--DLLA----E---DGL 314 (382)
T ss_dssp EEEEEESSCSEEE--EEEEEEECSSSCEEEEEE-----ECSSCEEECTTTCCCC-SC---CCG--GGEE----T---TCE
T ss_pred eccEEecCCcEEE--EEEEEEcCCCCceEeeeE-----EeccEEEeCCcccccC-CC---ChH--Hhhc----c---CCc
Confidence 3456777777554 457889999998752112 2345555542110000 00 000 0000 0 013
Q ss_pred EEEeCCCCCCCCeEEEEEEEEEc
Q 012183 117 TIVLANPLNTGETATLEILYILT 139 (469)
Q Consensus 117 ~I~Lp~pl~~~~~~~l~v~~~~~ 139 (469)
.|.=+.|++||++.++.|+..=.
T Consensus 315 ~vsd~~pI~PGETr~~~v~a~da 337 (382)
T 1yew_A 315 SVSDNSPLAPGETRTVDVTASDA 337 (382)
T ss_dssp EESCCSCBCTTCEEEEEEEEECH
T ss_pred eeCCCCCcCCCceeEEEEEeehH
Confidence 55556899999999999887643
Done!