Query 012183
Match_columns 469
No_of_seqs 118 out of 235
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 04:24:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012183.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012183hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3b7sa2 b.98.1.1 (A:1-208) Leu 72.3 24 0.0017 29.7 12.5 96 27-138 11-108 (208)
2 d1jv2a2 b.1.15.1 (A:599-737) T 66.3 21 0.0015 28.6 10.2 85 41-139 19-104 (139)
3 d1e42a1 b.1.10.1 (A:705-824) B 29.7 29 0.0021 27.5 4.7 62 49-144 31-92 (120)
4 d1x9la_ b.2.10.1 (A:) Hypothet 19.6 48 0.0035 26.9 4.3 26 111-136 105-130 (149)
5 d1t6aa_ d.129.8.1 (A:) Rbstp22 14.1 28 0.0021 27.5 1.2 31 351-384 61-91 (124)
6 d2bi0a1 d.38.1.4 (A:8-185) Hyp 12.3 1.8E+02 0.013 23.4 6.3 33 114-146 86-118 (178)
7 d1qbaa2 b.2.2.3 (A:28-200) Bac 9.9 3.8E+02 0.028 21.7 7.5 25 114-138 84-111 (173)
8 d1pfoa_ f.9.1.1 (A:) Perfringo 9.9 1.2E+02 0.0084 29.3 4.4 56 329-390 371-427 (471)
9 d1mvma_ b.121.5.2 (A:) Parvovi 9.5 28 0.0021 34.6 -0.3 15 317-331 435-449 (549)
10 d1s58a_ b.121.5.2 (A:) Parvovi 8.4 31 0.0023 34.2 -0.5 16 317-332 415-430 (536)
No 1
>d3b7sa2 b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=72.33 E-value=24 Score=29.73 Aligned_cols=96 Identities=11% Similarity=0.157 Sum_probs=57.5
Q ss_pred CCCCCeEEeeE--EEEEEcCCCeEEEEEEEEEEeCCCCCccEEEEEcCCCcccceeEEEEEEccCccccceeeeeeeeee
Q 012183 27 ASSHQIRINNA--ERRIDLSTHIVKVFLTLKVENTGKTSASEILLAFPPTQVDHLAFLEALAATGKKKKKTYVSLAVKPT 104 (469)
Q Consensus 27 ~~~~~~~n~~v--~R~idL~~~~vk~~~~i~~kN~g~~p~~~y~~~l~~~~~~~ls~i~a~~~~~~~k~~~~~~l~v~~~ 104 (469)
.+...++..++ +=++|+.+....-+++|+++-..+ ..++..+.. .++..-++..++.+ +.....
T Consensus 11 ~p~~~~~v~Hy~L~l~~d~~~~~~~G~v~I~~~~~~~-~~~~i~Ld~-----~~l~I~~v~~~g~~--------~~~~~~ 76 (208)
T d3b7sa2 11 SPASVCRTKHLHLRCSVDFTRRTLTGTAALTVQSQED-NLRSLVLDT-----KDLTIEKVVINGQE--------VKYALG 76 (208)
T ss_dssp CCTTTEEEEEEEEEEEEETTTTEEEEEEEEEEEECST-TEEEEEEEE-----SSCEEEEEEETTEE--------CCEEEC
T ss_pred CccccceEEEEEEEEEEcCCCCEEEEEEEEEEEECcC-CccEeeeec-----cCCEEEEEEECCcc--------cceEec
Confidence 33344455544 567788888888888888876443 234444432 23445556655432 222211
Q ss_pred cCCCCCCCceEEEEEeCCCCCCCCeEEEEEEEEE
Q 012183 105 QLPDAPNETNYYTIVLANPLNTGETATLEILYIL 138 (469)
Q Consensus 105 ~~~~~~~~~~~y~I~Lp~pl~~~~~~~l~v~~~~ 138 (469)
. ..+.......|.++.++.+|++.+|.|.|..
T Consensus 77 ~--~~~~~~~~l~i~~~~~~~~g~~~~l~i~y~~ 108 (208)
T d3b7sa2 77 E--RQSYKGSPMEISLPIALSKNQEIVIEISFET 108 (208)
T ss_dssp C--CCGGGCEEEEEEEEEEECTTCEEEEEEEEEC
T ss_pred c--ceeeccceeeeecccccCCCCEEEEEEEEEE
Confidence 1 0112335678999999999999999998864
No 2
>d1jv2a2 b.1.15.1 (A:599-737) Thigh, calf-1 and calf-2 domains of integrin alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=66.33 E-value=21 Score=28.60 Aligned_cols=85 Identities=18% Similarity=0.307 Sum_probs=53.8
Q ss_pred EEcCCCeEEEEEEEEEEeCCCCC-ccEEEEEcCCCcccceeEEEEEEccCccccceeeeeeeeeecCCCCCCCceEEEEE
Q 012183 41 IDLSTHIVKVFLTLKVENTGKTS-ASEILLAFPPTQVDHLAFLEALAATGKKKKKTYVSLAVKPTQLPDAPNETNYYTIV 119 (469)
Q Consensus 41 idL~~~~vk~~~~i~~kN~g~~p-~~~y~~~l~~~~~~~ls~i~a~~~~~~~k~~~~~~l~v~~~~~~~~~~~~~~y~I~ 119 (469)
+-++++ -....+++++|.|+.+ .+..++.+|++ +.|..+....... ..+.+.... ..+.....-.
T Consensus 19 l~vGs~-~~l~l~v~V~N~GE~AY~a~l~v~~P~~----L~y~~v~~~~~~~-----~~v~C~~~~----~~~~~~v~C~ 84 (139)
T d1jv2a2 19 IYIGDD-NPLTLIVKAQNQGEGAYEAELIVSIPLQ----ADFIGVVRNNEAL-----ARLSCAFKT----ENQTRQVVCD 84 (139)
T ss_dssp EESSSC-EEEEEEEEEEECSSCBSSCEEEEECCTT----CCEEEECCSSTTS-----BCCCCEEEE----SSSCEEEEEE
T ss_pred EEECCC-CEEEEEEEEEECCCChhhEEEEEEcCCC----CCEEeeeecCCCC-----ceeeccccC----CCCcEEEEEE
Confidence 335544 4688889999998654 44556777754 5565553322211 234554432 1234557889
Q ss_pred eCCCCCCCCeEEEEEEEEEc
Q 012183 120 LANPLNTGETATLEILYILT 139 (469)
Q Consensus 120 Lp~pl~~~~~~~l~v~~~~~ 139 (469)
|..|++.|+++++.+.+-..
T Consensus 85 lGnP~~~~~~~~f~l~f~~~ 104 (139)
T d1jv2a2 85 LGNPMKAGTQLLAGLRFSVH 104 (139)
T ss_dssp CCSSBCSSCBCCEEEEEEEC
T ss_pred CCCcccCCCEEEEEEEEEee
Confidence 99999999999888887653
No 3
>d1e42a1 b.1.10.1 (A:705-824) Beta2-adaptin AP2 ear domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.66 E-value=29 Score=27.53 Aligned_cols=62 Identities=10% Similarity=0.289 Sum_probs=41.9
Q ss_pred EEEEEEEEEeCCCCCccEEEEEcCCCcccceeEEEEEEccCccccceeeeeeeeeecCCCCCCCceEEEEEeCCCCCCCC
Q 012183 49 KVFLTLKVENTGKTSASEILLAFPPTQVDHLAFLEALAATGKKKKKTYVSLAVKPTQLPDAPNETNYYTIVLANPLNTGE 128 (469)
Q Consensus 49 k~~~~i~~kN~g~~p~~~y~~~l~~~~~~~ls~i~a~~~~~~~k~~~~~~l~v~~~~~~~~~~~~~~y~I~Lp~pl~~~~ 128 (469)
+...+++++|.+..+.+.|-+.+.+.-+ -+.... -..+|.||.||+
T Consensus 31 ~i~l~l~itN~s~~~ls~faIQfNKNsF-----------------------GL~P~~-----------~l~~p~~l~pgq 76 (120)
T d1e42a1 31 HIYMEMNFTNKALQHMTDFAIQFNKNSF-----------------------GVIPST-----------PLAIHTPLMPNQ 76 (120)
T ss_dssp EEEEEEEEEECSSSCBCCCEEEECCBTT-----------------------CCEESS-----------CCCCCSCBCTTC
T ss_pred EEEEEEEEecCCCCccchheEEEccccc-----------------------ccccCC-----------cccCCCccCCCC
Confidence 4558899999998899888777754311 111110 012578999999
Q ss_pred eEEEEEEEEEcccccc
Q 012183 129 TATLEILYILTHSLEP 144 (469)
Q Consensus 129 ~~~l~v~~~~~~~~~P 144 (469)
+.+..+-..+......
T Consensus 77 S~~~~lpl~~~~~~~~ 92 (120)
T d1e42a1 77 SIDVSLPLNTLGPVMK 92 (120)
T ss_dssp EEEEEEEEESCSCBCC
T ss_pred EEEEEEEEecCCcccC
Confidence 9999998887665443
No 4
>d1x9la_ b.2.10.1 (A:) Hypothetical protein DR1885 {Deinococcus radiodurans [TaxId: 1299]}
Probab=19.56 E-value=48 Score=26.93 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=19.8
Q ss_pred CCceEEEEEeCCCCCCCCeEEEEEEE
Q 012183 111 NETNYYTIVLANPLNTGETATLEILY 136 (469)
Q Consensus 111 ~~~~~y~I~Lp~pl~~~~~~~l~v~~ 136 (469)
.+.+.-...|..|+++|+++.+++.+
T Consensus 105 GG~HlML~gl~~~l~~Gd~v~ltL~f 130 (149)
T d1x9la_ 105 DGDHVMLMGLKRPLKVGETVNITLKA 130 (149)
T ss_dssp TSSEEEEEEECSCCCTTEEEEEEECB
T ss_pred CceEEEEcCCCCCCCCCCEEEEEEEE
Confidence 45566777888999999988776643
No 5
>d1t6aa_ d.129.8.1 (A:) Rbstp2229 protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=14.08 E-value=28 Score=27.52 Aligned_cols=31 Identities=29% Similarity=0.531 Sum_probs=18.6
Q ss_pred cCCceEEEEEecCCCcceEEEEEEEEEEcCCCCc
Q 012183 351 SDGRRYLNFTFGCPLVETVVDKLTIKVVLPEGAK 384 (469)
Q Consensus 351 ~~~~~yL~vp~~~~~~d~~~d~~~l~IiLPEGA~ 384 (469)
++++.|=.+-++.+.++ ++--+.|.||+||+
T Consensus 61 g~~~rY~~I~vgVg~~~---e~sfIqi~LP~~AT 91 (124)
T d1t6aa_ 61 GDGRLYKGMAISVRTAG---EETFIDIALPPGAT 91 (124)
T ss_dssp ESSTTCCEEEEEEEEET---TEEEEEEECCTTCC
T ss_pred cCCCceeeEEEeeccCC---ceeeEEEECCCCCC
Confidence 45566622222223333 56668999999997
No 6
>d2bi0a1 d.38.1.4 (A:8-185) Hypothetical protein Rv0216/MT0226 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=12.31 E-value=1.8e+02 Score=23.42 Aligned_cols=33 Identities=15% Similarity=0.095 Sum_probs=25.9
Q ss_pred eEEEEEeCCCCCCCCeEEEEEEEEEcccccccC
Q 012183 114 NYYTIVLANPLNTGETATLEILYILTHSLEPFP 146 (469)
Q Consensus 114 ~~y~I~Lp~pl~~~~~~~l~v~~~~~~~~~P~P 146 (469)
.+-.+++++|+.+|++++...+..=...-+..|
T Consensus 86 g~~~~rf~~PV~~GDTl~~~~eV~~~r~~~srp 118 (178)
T d2bi0a1 86 FYRGLRFHRFPAVGDTLYTRTEVVGLRANSPKP 118 (178)
T ss_dssp EEECEEBSSCCBTTCEEEEEEEEEEEEECCCCT
T ss_pred EeeeeEEeeeccCCCEEEEEEEEEEEEecCCCC
Confidence 345789999999999999999887666555444
No 7
>d1qbaa2 b.2.2.3 (A:28-200) Bacterial chitobiase, n-terminal domain {Serratia marcescens [TaxId: 615]}
Probab=9.90 E-value=3.8e+02 Score=21.72 Aligned_cols=25 Identities=8% Similarity=0.266 Sum_probs=17.7
Q ss_pred eEEEEEeCC---CCCCCCeEEEEEEEEE
Q 012183 114 NYYTIVLAN---PLNTGETATLEILYIL 138 (469)
Q Consensus 114 ~~y~I~Lp~---pl~~~~~~~l~v~~~~ 138 (469)
-+|+|+--. +++||++++|.+..-+
T Consensus 84 Dl~kitPt~~F~gl~~G~s~~i~f~~~~ 111 (173)
T d1qbaa2 84 DLYKLEPTAKFSGFPAGKAVEIPVVAEY 111 (173)
T ss_dssp TEEEEEECTTCCCBCTTCEEEEEEEEES
T ss_pred CEEEEeEcccCCCcCCCCEEEEEEEccc
Confidence 467888432 6999999888776543
No 8
>d1pfoa_ f.9.1.1 (A:) Perfringolysin {Clostridium perfringens [TaxId: 1502]}
Probab=9.87 E-value=1.2e+02 Score=29.26 Aligned_cols=56 Identities=14% Similarity=0.292 Sum_probs=36.4
Q ss_pred CCceeeEEEeecCCcccceeeccCCceEEE-EEecCCCcceEEEEEEEEEEcCCCCcCCceeC
Q 012183 329 GGWRATFVIGYGLPLEDFLFESSDGRRYLN-FTFGCPLVETVVDKLTIKVVLPEGAKGPSAVV 390 (469)
Q Consensus 329 GGWk~~FtiGyn~pl~~~L~~~~~~~~yL~-vp~~~~~~d~~~d~~~l~IiLPEGA~~i~v~~ 390 (469)
||.=-.|.|-|+ ++-+ +.+|+..+. -.-.-.-.| ---++...|.||.+|+||+|.-
T Consensus 371 g~yva~f~i~wd----e~~y-d~~g~e~~~~k~w~gn~~~-~ta~f~t~i~l~~narni~v~~ 427 (471)
T d1pfoa_ 371 GAYVAQFEVAWD----EVSY-DKEGNEVLTHKTWDGNYQD-KTAHYSTVIPLEANARNIRIKA 427 (471)
T ss_dssp CSSCEEEEEEEE----EEEE-CTTSCEEEEEEECTTTTCC-BCSSEEEEEEECTTEEEEEEEE
T ss_pred ceEEEEEEEEee----eccc-CCCCcEecccccccCCCcc-ccccceEEEecCCCceeeEEEE
Confidence 888889999998 4443 355666532 122112222 2246788999999999999853
No 9
>d1mvma_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid protein {Murine minute virus, strain i [TaxId: 10794]}
Probab=9.47 E-value=28 Score=34.58 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=13.2
Q ss_pred eEEEEecCCcccCCc
Q 012183 317 SELEIEPRYPLFGGW 331 (469)
Q Consensus 317 ~~l~l~PRfPLfGGW 331 (469)
-.++.+||+|++|||
T Consensus 435 Pd~dfkp~~p~~gGf 449 (549)
T d1mvma_ 435 LDLEHKPRLHITAPF 449 (549)
T ss_dssp CCCSSCCSCCSSCSB
T ss_pred CCCCcCCCCcccCCc
Confidence 356899999999999
No 10
>d1s58a_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid protein {Human parvovirus B19 [TaxId: 10798]}
Probab=8.37 E-value=31 Score=34.19 Aligned_cols=16 Identities=19% Similarity=0.692 Sum_probs=13.7
Q ss_pred eEEEEecCCcccCCce
Q 012183 317 SELEIEPRYPLFGGWR 332 (469)
Q Consensus 317 ~~l~l~PRfPLfGGWk 332 (469)
+.+.+.|++|++|||=
T Consensus 415 tD~~f~ps~p~lGgfg 430 (536)
T d1s58a_ 415 LDDSFKTQFAALGGWG 430 (536)
T ss_dssp CSCCSSTTBCTTSSBB
T ss_pred CCCCcCCCCCcCCccc
Confidence 5567899999999993
Done!