Query 012184
Match_columns 469
No_of_seqs 285 out of 2720
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 23:56:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012184.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012184hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02193 nitrile-specifier pro 100.0 3.4E-42 7.3E-47 346.0 33.2 304 1-327 123-455 (470)
2 KOG4441 Proteins containing BT 100.0 3.6E-42 7.9E-47 349.5 28.5 266 1-302 287-555 (571)
3 PLN02193 nitrile-specifier pro 100.0 3.6E-41 7.9E-46 338.5 34.8 276 1-294 178-469 (470)
4 PLN02153 epithiospecifier prot 100.0 1.5E-40 3.2E-45 322.7 33.1 276 1-293 35-339 (341)
5 KOG4693 Uncharacterized conser 100.0 3.3E-41 7.2E-46 291.4 21.1 271 1-280 26-312 (392)
6 KOG4693 Uncharacterized conser 100.0 3E-41 6.5E-46 291.7 18.9 270 51-326 12-313 (392)
7 PLN02153 epithiospecifier prot 100.0 8.1E-40 1.8E-44 317.4 31.3 287 22-327 4-326 (341)
8 PHA02713 hypothetical protein; 100.0 7.3E-40 1.6E-44 334.4 30.3 254 16-306 273-546 (557)
9 KOG0379 Kelch repeat-containin 100.0 2.2E-37 4.8E-42 310.0 27.4 277 1-291 73-355 (482)
10 KOG0379 Kelch repeat-containin 100.0 3E-37 6.6E-42 309.0 26.0 263 48-316 56-328 (482)
11 PHA03098 kelch-like protein; P 100.0 2.4E-36 5.2E-41 311.1 29.3 254 16-305 265-523 (534)
12 KOG4441 Proteins containing BT 100.0 3.7E-36 8E-41 305.7 25.1 220 1-248 335-555 (571)
13 TIGR03548 mutarot_permut cycli 100.0 3.3E-35 7.2E-40 283.1 27.7 269 51-331 2-319 (323)
14 TIGR03547 muta_rot_YjhT mutatr 100.0 1.8E-34 3.9E-39 281.1 27.3 264 47-327 2-333 (346)
15 TIGR03548 mutarot_permut cycli 100.0 3.3E-34 7.2E-39 276.2 27.8 250 1-281 16-314 (323)
16 PHA02713 hypothetical protein; 100.0 6.7E-35 1.4E-39 297.9 23.6 217 1-248 306-542 (557)
17 TIGR03547 muta_rot_YjhT mutatr 100.0 5.1E-34 1.1E-38 277.9 28.5 253 1-291 20-344 (346)
18 PHA03098 kelch-like protein; P 100.0 2.5E-34 5.5E-39 296.1 26.6 223 1-251 297-523 (534)
19 KOG1230 Protein containing rep 100.0 4.7E-34 1E-38 261.1 20.8 247 48-301 62-348 (521)
20 KOG4152 Host cell transcriptio 100.0 1.9E-34 4.2E-39 269.7 17.9 273 1-293 45-363 (830)
21 PRK14131 N-acetylneuraminic ac 100.0 2.7E-33 5.8E-38 274.7 27.0 261 1-298 41-373 (376)
22 KOG1230 Protein containing rep 100.0 3.9E-34 8.4E-39 261.7 19.1 231 1-246 81-347 (521)
23 PRK14131 N-acetylneuraminic ac 100.0 5.9E-33 1.3E-37 272.3 26.2 266 46-326 22-354 (376)
24 PHA02790 Kelch-like protein; P 100.0 5.9E-33 1.3E-37 279.8 26.4 205 1-247 274-478 (480)
25 PHA02790 Kelch-like protein; P 100.0 5.5E-31 1.2E-35 265.6 27.8 210 58-300 267-477 (480)
26 KOG4152 Host cell transcriptio 100.0 2.6E-32 5.7E-37 255.4 16.4 283 23-326 15-343 (830)
27 COG3055 Uncharacterized protei 99.8 4.9E-19 1.1E-23 161.0 18.3 271 45-330 29-364 (381)
28 COG3055 Uncharacterized protei 99.8 1.4E-16 3E-21 145.2 20.4 244 16-293 59-374 (381)
29 KOG2437 Muskelin [Signal trans 99.7 5.7E-18 1.2E-22 159.4 -1.4 276 1-292 275-611 (723)
30 KOG2437 Muskelin [Signal trans 99.6 1.6E-16 3.4E-21 149.8 6.4 272 21-300 235-541 (723)
31 PF13964 Kelch_6: Kelch motif 99.3 1.6E-11 3.5E-16 82.9 6.3 50 52-104 1-50 (50)
32 PLN02772 guanylate kinase 99.2 7.8E-11 1.7E-15 112.3 11.8 90 100-191 21-110 (398)
33 PF13964 Kelch_6: Kelch motif 99.2 6.8E-11 1.5E-15 79.8 6.4 50 103-155 1-50 (50)
34 PLN02772 guanylate kinase 99.1 8.9E-10 1.9E-14 105.2 11.4 88 50-140 22-110 (398)
35 PF01344 Kelch_1: Kelch motif; 99.0 5.6E-10 1.2E-14 74.3 5.6 44 52-95 1-44 (47)
36 PF13415 Kelch_3: Galactose ox 99.0 7.6E-10 1.7E-14 74.1 6.2 48 113-163 1-49 (49)
37 PF13415 Kelch_3: Galactose ox 99.0 8.6E-10 1.9E-14 73.9 5.8 48 62-112 1-49 (49)
38 PF03089 RAG2: Recombination a 99.0 1.3E-08 2.8E-13 90.5 14.3 159 115-281 40-230 (337)
39 PF07646 Kelch_2: Kelch motif; 98.9 3E-09 6.4E-14 71.3 6.4 45 52-96 1-47 (49)
40 PF07646 Kelch_2: Kelch motif; 98.9 3.4E-09 7.3E-14 71.0 6.3 46 103-148 1-48 (49)
41 PF13418 Kelch_4: Galactose ox 98.9 1.4E-09 3E-14 73.0 4.4 47 52-101 1-48 (49)
42 PF01344 Kelch_1: Kelch motif; 98.9 2.4E-09 5.3E-14 71.2 5.3 45 103-147 1-45 (47)
43 PF03089 RAG2: Recombination a 98.9 5.4E-07 1.2E-11 80.4 21.0 159 65-228 41-232 (337)
44 PF13418 Kelch_4: Galactose ox 98.8 3.7E-09 8.1E-14 70.9 4.4 44 154-197 1-45 (49)
45 PF13854 Kelch_5: Kelch motif 98.8 1.3E-08 2.8E-13 65.5 5.3 40 50-89 2-42 (42)
46 PF07250 Glyoxal_oxid_N: Glyox 98.7 2.1E-06 4.5E-11 77.6 18.9 176 81-278 48-243 (243)
47 PF13854 Kelch_5: Kelch motif 98.7 5.2E-08 1.1E-12 62.7 5.6 41 100-140 1-42 (42)
48 smart00612 Kelch Kelch domain. 98.5 1.1E-07 2.4E-12 63.0 4.0 46 1-63 2-47 (47)
49 smart00612 Kelch Kelch domain. 98.5 1.8E-07 3.8E-12 62.0 4.7 47 167-216 1-47 (47)
50 TIGR01640 F_box_assoc_1 F-box 98.5 0.00014 3E-09 66.5 24.3 200 80-295 15-230 (230)
51 PF07250 Glyoxal_oxid_N: Glyox 98.3 3E-05 6.5E-10 70.1 14.3 151 132-305 48-210 (243)
52 TIGR01640 F_box_assoc_1 F-box 98.2 0.00067 1.5E-08 62.0 22.7 200 16-241 15-230 (230)
53 PRK11138 outer membrane biogen 97.4 0.11 2.4E-06 51.7 25.3 146 57-242 200-356 (394)
54 PF13360 PQQ_2: PQQ-like domai 97.3 0.12 2.5E-06 47.2 29.3 212 16-295 4-232 (238)
55 PF09726 Macoilin: Transmembra 97.3 0.0015 3.3E-08 68.4 11.2 109 353-464 420-528 (697)
56 PF12768 Rax2: Cortical protei 97.3 0.02 4.3E-07 53.4 16.6 114 77-198 14-130 (281)
57 PF13360 PQQ_2: PQQ-like domai 97.3 0.14 3E-06 46.7 24.7 170 16-242 47-233 (238)
58 PF07893 DUF1668: Protein of u 97.2 0.09 2E-06 51.0 21.4 128 61-209 75-224 (342)
59 PRK11138 outer membrane biogen 97.1 0.11 2.4E-06 51.5 21.6 155 57-245 64-231 (394)
60 TIGR03300 assembly_YfgL outer 97.0 0.39 8.5E-06 47.3 24.0 130 80-242 201-341 (377)
61 PF12718 Tropomyosin_1: Tropom 97.0 0.016 3.4E-07 48.2 11.6 14 431-444 115-128 (143)
62 PF08450 SGL: SMP-30/Gluconola 96.9 0.24 5.3E-06 45.5 20.3 190 16-247 23-221 (246)
63 PF12768 Rax2: Cortical protei 96.9 0.04 8.6E-07 51.4 14.5 121 118-248 2-130 (281)
64 TIGR03300 assembly_YfgL outer 96.7 0.7 1.5E-05 45.5 26.5 209 16-295 76-299 (377)
65 KOG2055 WD40 repeat protein [G 96.7 0.19 4.1E-06 48.7 17.7 151 62-242 224-377 (514)
66 PF05096 Glu_cyclase_2: Glutam 96.7 0.14 3E-06 46.9 16.0 154 61-245 54-209 (264)
67 KOG2055 WD40 repeat protein [G 96.7 0.064 1.4E-06 51.8 14.2 110 62-193 269-378 (514)
68 PF02191 OLF: Olfactomedin-lik 96.5 0.58 1.3E-05 43.0 19.3 189 62-277 30-237 (250)
69 KOG1029 Endocytic adaptor prot 96.5 0.05 1.1E-06 55.8 12.7 31 353-383 326-356 (1118)
70 PF09726 Macoilin: Transmembra 96.4 0.024 5.1E-07 59.7 10.9 19 428-446 549-567 (697)
71 PF12718 Tropomyosin_1: Tropom 96.4 0.048 1E-06 45.3 10.3 16 428-443 77-92 (143)
72 KOG0646 WD40 repeat protein [G 96.3 0.21 4.5E-06 48.4 15.4 31 55-90 84-114 (476)
73 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.3 1.7 3.7E-05 44.8 25.3 124 57-197 64-199 (527)
74 TIGR02800 propeller_TolB tol-p 96.2 1.5 3.2E-05 43.8 23.5 147 16-197 215-362 (417)
75 PRK04922 tolB translocation pr 96.2 1.7 3.7E-05 43.8 25.8 184 79-295 228-413 (433)
76 PRK00178 tolB translocation pr 96.1 1.8 3.9E-05 43.5 26.2 147 79-248 223-372 (430)
77 TIGR03866 PQQ_ABC_repeats PQQ- 96.1 1.2 2.6E-05 41.6 26.2 148 62-243 42-191 (300)
78 PRK04792 tolB translocation pr 96.1 1.9 4E-05 43.7 25.8 149 79-247 242-390 (448)
79 cd00094 HX Hemopexin-like repe 96.0 0.67 1.5E-05 40.9 16.6 156 56-242 10-178 (194)
80 PF07888 CALCOCO1: Calcium bin 96.0 0.11 2.4E-06 52.3 12.4 45 373-417 186-230 (546)
81 PRK04792 tolB translocation pr 95.9 2.2 4.7E-05 43.2 21.7 153 62-241 273-427 (448)
82 PRK04043 tolB translocation pr 95.9 2.3 4.9E-05 42.6 21.7 192 16-248 214-409 (419)
83 PRK05137 tolB translocation pr 95.8 2.4 5.1E-05 42.8 26.1 188 79-297 226-416 (435)
84 PF04156 IncA: IncA protein; 95.8 0.2 4.4E-06 44.1 12.3 47 373-419 96-142 (191)
85 KOG1029 Endocytic adaptor prot 95.8 0.11 2.3E-06 53.4 11.4 52 376-427 469-520 (1118)
86 COG2433 Uncharacterized conser 95.8 0.081 1.7E-06 53.1 10.2 81 373-453 423-510 (652)
87 PF05096 Glu_cyclase_2: Glutam 95.7 0.32 7E-06 44.5 13.2 139 16-195 69-209 (264)
88 PRK10361 DNA recombination pro 95.6 0.2 4.4E-06 49.8 12.5 35 429-463 170-206 (475)
89 cd00216 PQQ_DH Dehydrogenases 95.6 2.1 4.6E-05 43.8 20.6 112 16-146 72-193 (488)
90 PRK04922 tolB translocation pr 95.6 3 6.4E-05 42.0 23.3 188 16-246 229-418 (433)
91 PRK00178 tolB translocation pr 95.5 3.1 6.7E-05 41.8 22.4 143 79-242 267-409 (430)
92 KOG0995 Centromere-associated 95.5 0.2 4.3E-06 50.1 11.7 51 366-416 274-324 (581)
93 PF07888 CALCOCO1: Calcium bin 95.5 0.15 3.2E-06 51.4 11.0 41 354-394 146-186 (546)
94 PRK05137 tolB translocation pr 95.5 3.3 7.1E-05 41.7 23.6 192 16-247 227-420 (435)
95 PF13851 GAS: Growth-arrest sp 95.4 0.36 7.8E-06 42.7 12.3 31 366-396 49-79 (201)
96 smart00787 Spc7 Spc7 kinetocho 95.4 0.27 5.8E-06 46.7 12.2 11 375-385 182-192 (312)
97 cd00216 PQQ_DH Dehydrogenases 95.4 3.7 8E-05 42.1 24.8 123 57-196 56-192 (488)
98 PRK03629 tolB translocation pr 95.4 3.5 7.6E-05 41.4 26.3 186 79-295 223-408 (429)
99 PF04111 APG6: Autophagy prote 95.3 0.16 3.5E-06 48.3 10.5 43 377-419 48-90 (314)
100 PTZ00420 coronin; Provisional 95.3 4.3 9.4E-05 42.1 27.5 107 115-240 139-249 (568)
101 PF07893 DUF1668: Protein of u 95.3 0.65 1.4E-05 45.0 14.7 118 112-248 75-216 (342)
102 PRK11028 6-phosphogluconolacto 95.3 3 6.5E-05 40.1 25.0 136 16-190 13-157 (330)
103 PF02897 Peptidase_S9_N: Proly 95.2 3.2 6.9E-05 41.4 20.1 209 62-298 180-409 (414)
104 KOG0804 Cytoplasmic Zn-finger 95.2 0.38 8.2E-06 46.6 12.3 45 376-420 358-402 (493)
105 PRK09039 hypothetical protein; 95.2 0.26 5.7E-06 47.6 11.5 22 406-427 136-157 (343)
106 PF04156 IncA: IncA protein; 95.1 0.33 7.1E-06 42.8 11.3 94 354-447 84-181 (191)
107 PF04111 APG6: Autophagy prote 95.1 0.26 5.6E-06 47.0 11.1 22 429-450 111-132 (314)
108 COG4257 Vgb Streptogramin lyas 95.1 2.3 5E-05 39.0 16.1 59 180-247 253-313 (353)
109 PF10186 Atg14: UV radiation r 95.0 0.44 9.4E-06 45.3 12.7 53 372-424 56-108 (302)
110 COG4372 Uncharacterized protei 95.0 0.52 1.1E-05 44.6 12.2 32 377-408 121-152 (499)
111 PF08268 FBA_3: F-box associat 95.0 1.1 2.4E-05 36.5 13.3 83 165-248 5-89 (129)
112 PRK04043 tolB translocation pr 95.0 4.5 9.7E-05 40.5 23.7 185 80-296 214-403 (419)
113 PF11559 ADIP: Afadin- and alp 94.9 0.89 1.9E-05 38.3 12.7 54 363-416 57-110 (151)
114 KOG0310 Conserved WD40 repeat- 94.8 1.2 2.5E-05 43.7 14.5 110 62-194 79-190 (487)
115 COG2433 Uncharacterized conser 94.8 0.22 4.8E-06 50.1 10.0 10 61-70 27-36 (652)
116 PF10473 CENP-F_leu_zip: Leuci 94.8 1.1 2.4E-05 36.9 12.4 75 353-427 26-100 (140)
117 TIGR02800 propeller_TolB tol-p 94.8 4.9 0.00011 40.1 26.0 147 79-247 214-362 (417)
118 PF08450 SGL: SMP-30/Gluconola 94.7 1.6 3.5E-05 40.0 15.3 154 16-197 61-221 (246)
119 cd00094 HX Hemopexin-like repe 94.7 2.8 6.1E-05 36.9 17.1 155 109-296 12-178 (194)
120 PF10282 Lactonase: Lactonase, 94.7 4.6 0.0001 39.2 26.5 250 2-292 2-274 (345)
121 PRK09039 hypothetical protein; 94.6 0.49 1.1E-05 45.8 11.7 46 377-422 121-166 (343)
122 PF08614 ATG16: Autophagy prot 94.5 0.32 6.9E-06 43.0 9.6 49 379-427 102-150 (194)
123 PF14583 Pectate_lyase22: Olig 94.5 1.3 2.8E-05 43.0 14.1 233 2-280 50-303 (386)
124 PF08317 Spc7: Spc7 kinetochor 94.4 0.67 1.4E-05 44.6 12.1 16 432-447 245-260 (325)
125 PF04849 HAP1_N: HAP1 N-termin 94.4 0.91 2E-05 42.4 12.3 45 379-423 206-250 (306)
126 cd00200 WD40 WD40 domain, foun 94.3 3.9 8.5E-05 37.1 25.8 187 62-294 62-250 (289)
127 PF08268 FBA_3: F-box associat 94.3 1.9 4.2E-05 35.1 13.2 87 59-147 2-89 (129)
128 PF10481 CENP-F_N: Cenp-F N-te 94.3 0.53 1.2E-05 42.4 10.1 57 392-448 59-126 (307)
129 TIGR03752 conj_TIGR03752 integ 94.3 0.29 6.4E-06 48.2 9.3 20 428-447 120-139 (472)
130 PRK03629 tolB translocation pr 94.2 6.9 0.00015 39.3 22.6 144 80-247 268-414 (429)
131 KOG2321 WD40 repeat protein [G 94.2 2.4 5.1E-05 42.7 15.2 123 152-294 131-259 (703)
132 KOG2129 Uncharacterized conser 94.1 0.53 1.1E-05 45.0 10.3 39 412-450 258-297 (552)
133 KOG2264 Exostosin EXT1L [Signa 94.1 0.18 3.8E-06 50.1 7.4 40 377-416 105-144 (907)
134 PF02191 OLF: Olfactomedin-lik 94.1 4.7 0.0001 37.1 17.4 159 50-221 66-236 (250)
135 KOG0804 Cytoplasmic Zn-finger 94.1 0.66 1.4E-05 45.0 11.0 7 287-293 269-275 (493)
136 PF09730 BicD: Microtubule-ass 94.1 0.58 1.3E-05 49.2 11.6 71 350-420 33-103 (717)
137 KOG0250 DNA repair protein RAD 94.0 0.46 9.9E-06 51.3 10.8 41 360-400 684-724 (1074)
138 PRK02889 tolB translocation pr 93.8 8 0.00017 38.8 25.5 181 79-294 220-404 (427)
139 PF15035 Rootletin: Ciliary ro 93.8 0.44 9.4E-06 41.3 8.7 56 393-448 60-119 (182)
140 COG4942 Membrane-bound metallo 93.7 1.6 3.5E-05 42.6 13.0 42 353-394 152-193 (420)
141 PF09304 Cortex-I_coil: Cortex 93.7 2.5 5.4E-05 32.6 11.3 63 356-425 14-76 (107)
142 PF00261 Tropomyosin: Tropomyo 93.7 1.5 3.3E-05 40.1 12.4 78 373-450 128-216 (237)
143 PF11932 DUF3450: Protein of u 93.6 1.3 2.9E-05 40.8 12.1 32 392-423 62-93 (251)
144 PF11559 ADIP: Afadin- and alp 93.6 1.7 3.6E-05 36.6 11.7 42 376-417 63-104 (151)
145 PF12128 DUF3584: Protein of u 93.6 0.76 1.6E-05 52.5 12.4 62 352-413 601-662 (1201)
146 PF06785 UPF0242: Uncharacteri 93.6 1.1 2.4E-05 41.6 11.0 35 380-414 100-134 (401)
147 smart00284 OLF Olfactomedin-li 93.4 6.3 0.00014 36.1 20.5 194 62-276 34-241 (255)
148 PF00769 ERM: Ezrin/radixin/mo 93.3 1.1 2.4E-05 41.0 11.0 13 429-441 101-113 (246)
149 PTZ00421 coronin; Provisional 93.3 11 0.00023 38.7 30.5 156 63-246 138-297 (493)
150 TIGR01005 eps_transp_fam exopo 93.3 0.69 1.5E-05 50.2 11.2 71 373-443 317-388 (754)
151 PF05384 DegS: Sensor protein 93.3 2.2 4.8E-05 36.0 11.6 59 353-411 8-66 (159)
152 cd00200 WD40 WD40 domain, foun 93.3 6.2 0.00013 35.8 24.5 177 63-281 105-283 (289)
153 TIGR03007 pepcterm_ChnLen poly 93.2 1 2.2E-05 46.3 11.9 53 391-443 315-367 (498)
154 PF11932 DUF3450: Protein of u 93.2 1.2 2.6E-05 41.1 11.2 41 377-417 54-94 (251)
155 PF10473 CENP-F_leu_zip: Leuci 93.2 2.5 5.4E-05 34.8 11.5 21 396-416 83-103 (140)
156 PF14662 CCDC155: Coiled-coil 93.2 2.4 5.2E-05 36.6 11.7 6 441-446 182-187 (193)
157 COG4026 Uncharacterized protei 93.1 0.48 1E-05 41.3 7.6 71 369-439 132-206 (290)
158 PF08614 ATG16: Autophagy prot 93.1 0.55 1.2E-05 41.4 8.4 74 352-425 82-155 (194)
159 COG5185 HEC1 Protein involved 93.1 0.92 2E-05 44.2 10.1 43 374-416 318-360 (622)
160 COG4942 Membrane-bound metallo 93.0 1 2.2E-05 44.0 10.5 68 353-420 40-107 (420)
161 PF15070 GOLGA2L5: Putative go 93.0 1.1 2.4E-05 46.7 11.5 51 353-403 17-67 (617)
162 KOG0646 WD40 repeat protein [G 92.9 10 0.00022 37.3 17.7 43 130-177 198-240 (476)
163 PF14870 PSII_BNR: Photosynthe 92.9 8.6 0.00019 36.4 22.8 203 55-302 64-270 (302)
164 PF00038 Filament: Intermediat 92.9 2 4.4E-05 41.1 12.7 71 378-448 208-286 (312)
165 TIGR03752 conj_TIGR03752 integ 92.8 0.66 1.4E-05 45.8 9.0 23 428-450 113-135 (472)
166 PF09755 DUF2046: Uncharacteri 92.7 2.2 4.8E-05 39.8 11.7 10 353-362 86-95 (310)
167 PF12325 TMF_TATA_bd: TATA ele 92.6 1.8 3.8E-05 34.7 9.7 90 353-446 18-111 (120)
168 PF05335 DUF745: Protein of un 92.6 3.9 8.5E-05 35.6 12.6 30 419-448 139-168 (188)
169 COG3064 TolA Membrane protein 92.4 1.2 2.6E-05 41.1 9.4 24 318-341 23-46 (387)
170 KOG0999 Microtubule-associated 92.4 1.7 3.8E-05 43.2 11.1 70 352-421 108-177 (772)
171 COG3883 Uncharacterized protei 92.3 0.66 1.4E-05 42.3 7.8 10 456-465 111-120 (265)
172 PF10498 IFT57: Intra-flagella 92.3 2.3 4.9E-05 41.3 12.0 46 347-392 216-261 (359)
173 KOG1853 LIS1-interacting prote 92.3 2.7 5.9E-05 37.5 11.2 27 377-403 50-76 (333)
174 PF11180 DUF2968: Protein of u 92.2 2.3 5E-05 36.6 10.3 85 372-462 105-189 (192)
175 KOG0995 Centromere-associated 92.1 0.72 1.6E-05 46.3 8.4 40 384-423 285-324 (581)
176 KOG0996 Structural maintenance 92.1 2.1 4.6E-05 46.7 12.2 10 312-321 741-750 (1293)
177 PF05911 DUF869: Plant protein 92.0 1.7 3.8E-05 46.3 11.6 48 351-398 596-643 (769)
178 KOG2391 Vacuolar sorting prote 92.0 1.2 2.6E-05 41.6 9.1 62 362-423 222-283 (365)
179 PF06785 UPF0242: Uncharacteri 92.0 1.2 2.7E-05 41.4 9.1 27 383-409 131-157 (401)
180 KOG0161 Myosin class II heavy 92.0 1.4 3E-05 51.6 11.5 46 378-423 1096-1141(1930)
181 PF06818 Fez1: Fez1; InterPro 91.9 1.4 3E-05 38.5 8.8 21 403-423 83-103 (202)
182 PTZ00421 coronin; Provisional 91.7 17 0.00037 37.2 21.2 63 115-192 139-201 (493)
183 COG3883 Uncharacterized protei 91.7 4.8 0.0001 36.9 12.5 30 373-402 60-89 (265)
184 KOG0649 WD40 repeat protein [G 91.7 9.3 0.0002 34.4 13.8 138 90-249 100-245 (325)
185 PF12217 End_beta_propel: Cata 91.7 10 0.00022 34.5 16.4 119 51-174 134-258 (367)
186 KOG0310 Conserved WD40 repeat- 91.7 15 0.00032 36.3 18.2 175 60-282 120-302 (487)
187 PF02897 Peptidase_S9_N: Proly 91.6 6.6 0.00014 39.2 15.2 146 16-197 253-412 (414)
188 KOG0996 Structural maintenance 91.6 1.9 4.2E-05 47.0 11.3 33 428-460 444-476 (1293)
189 TIGR03017 EpsF chain length de 91.6 2.2 4.8E-05 43.1 11.7 38 404-441 315-352 (444)
190 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.5 6.7 0.00015 32.1 12.5 23 395-417 61-83 (132)
191 PF11180 DUF2968: Protein of u 91.5 3 6.5E-05 35.9 10.4 52 372-423 112-163 (192)
192 PF10282 Lactonase: Lactonase, 91.5 14 0.00031 35.8 21.8 169 106-301 146-332 (345)
193 TIGR03185 DNA_S_dndD DNA sulfu 91.5 2.1 4.6E-05 45.5 11.9 11 65-75 30-40 (650)
194 PHA02562 46 endonuclease subun 91.5 2 4.3E-05 44.9 11.6 11 353-363 301-311 (562)
195 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.4 19 0.00042 37.2 20.9 113 16-146 80-199 (527)
196 PF15290 Syntaphilin: Golgi-lo 91.4 2.9 6.3E-05 38.0 10.6 93 353-448 70-169 (305)
197 COG4880 Secreted protein conta 91.4 11 0.00024 36.8 15.0 124 54-190 378-504 (603)
198 PLN00181 protein SPA1-RELATED; 91.2 26 0.00057 38.4 24.5 60 62-140 587-650 (793)
199 TIGR01843 type_I_hlyD type I s 91.2 3.4 7.3E-05 41.3 12.6 13 435-447 250-262 (423)
200 COG4257 Vgb Streptogramin lyas 91.2 10 0.00023 34.9 13.9 61 129-197 253-313 (353)
201 TIGR03185 DNA_S_dndD DNA sulfu 91.2 2.2 4.7E-05 45.5 11.5 46 377-422 207-252 (650)
202 COG4026 Uncharacterized protei 91.1 1.3 2.7E-05 38.7 7.8 31 375-405 152-182 (290)
203 KOG4403 Cell surface glycoprot 91.1 1.3 2.9E-05 42.6 8.6 33 392-424 258-290 (575)
204 PF09304 Cortex-I_coil: Cortex 91.1 5.2 0.00011 30.9 10.2 58 366-423 10-67 (107)
205 PF15066 CAGE1: Cancer-associa 91.0 3 6.6E-05 40.8 11.0 36 372-407 390-425 (527)
206 PF10168 Nup88: Nuclear pore c 91.0 2.4 5.2E-05 45.2 11.5 11 16-26 43-53 (717)
207 KOG4649 PQQ (pyrrolo-quinoline 91.0 6.4 0.00014 35.8 12.2 98 2-141 25-126 (354)
208 KOG0971 Microtubule-associated 90.9 3.5 7.5E-05 43.8 12.0 29 424-452 325-353 (1243)
209 PF14870 PSII_BNR: Photosynthe 90.8 15 0.00032 34.8 16.4 183 54-278 105-294 (302)
210 KOG1899 LAR transmembrane tyro 90.8 2.9 6.2E-05 42.5 10.9 33 391-423 172-204 (861)
211 PF13870 DUF4201: Domain of un 90.8 7.5 0.00016 33.7 12.7 67 385-451 97-172 (177)
212 KOG4005 Transcription factor X 90.7 3.2 6.9E-05 36.7 9.9 57 387-446 91-147 (292)
213 PF15233 SYCE1: Synaptonemal c 90.7 7.2 0.00016 31.1 10.9 68 347-414 9-76 (134)
214 PF09755 DUF2046: Uncharacteri 90.7 7.7 0.00017 36.3 12.9 38 410-447 116-158 (310)
215 PLN00181 protein SPA1-RELATED; 90.6 30 0.00065 37.9 21.7 172 81-293 557-738 (793)
216 KOG0249 LAR-interacting protei 90.4 1.5 3.2E-05 45.1 8.8 38 413-450 145-182 (916)
217 PF15619 Lebercilin: Ciliary p 90.4 7.3 0.00016 34.2 12.2 24 392-415 124-147 (194)
218 PF06637 PV-1: PV-1 protein (P 90.4 3.2 6.8E-05 39.5 10.3 20 428-447 360-379 (442)
219 PRK04863 mukB cell division pr 90.4 3.6 7.8E-05 47.7 12.8 7 116-122 30-36 (1486)
220 PF00038 Filament: Intermediat 90.3 4.8 0.0001 38.5 12.2 17 432-448 284-300 (312)
221 PTZ00420 coronin; Provisional 90.3 25 0.00055 36.6 25.4 61 62-141 137-200 (568)
222 PF10481 CENP-F_N: Cenp-F N-te 90.3 5.3 0.00012 36.3 11.2 24 424-447 109-132 (307)
223 PF10234 Cluap1: Clusterin-ass 90.2 5.5 0.00012 36.7 11.5 23 405-427 195-217 (267)
224 KOG4378 Nuclear protein COP1 [ 90.1 8.2 0.00018 38.3 13.0 88 182-292 188-279 (673)
225 PF07889 DUF1664: Protein of u 90.0 6 0.00013 31.9 10.3 37 391-427 66-102 (126)
226 KOG1962 B-cell receptor-associ 90.0 1.7 3.8E-05 38.3 7.9 23 405-427 156-178 (216)
227 PRK13684 Ycf48-like protein; P 90.0 19 0.00042 34.8 20.0 139 81-247 154-296 (334)
228 PF00769 ERM: Ezrin/radixin/mo 90.0 4.1 8.9E-05 37.4 10.8 32 367-398 14-45 (246)
229 PF08581 Tup_N: Tup N-terminal 90.0 2.8 6.1E-05 30.7 7.7 70 366-441 5-74 (79)
230 KOG4661 Hsp27-ERE-TATA-binding 90.0 3.2 7E-05 41.5 10.4 34 398-431 644-677 (940)
231 KOG0980 Actin-binding protein 89.9 5.1 0.00011 42.5 12.3 8 246-253 254-261 (980)
232 PF15556 Zwint: ZW10 interacto 89.9 7.6 0.00016 33.5 11.2 17 431-447 155-171 (252)
233 COG1520 FOG: WD40-like repeat 89.9 21 0.00045 35.0 17.9 139 16-195 79-225 (370)
234 COG3206 GumC Uncharacterized p 89.8 2.9 6.4E-05 42.4 10.7 42 402-443 344-385 (458)
235 PF12217 End_beta_propel: Cata 89.8 15 0.00033 33.4 13.5 117 55-175 193-334 (367)
236 PF00261 Tropomyosin: Tropomyo 89.6 9.2 0.0002 34.9 12.8 28 393-420 176-203 (237)
237 PF12761 End3: Actin cytoskele 89.6 1.7 3.6E-05 37.7 7.3 7 287-293 37-43 (195)
238 KOG2991 Splicing regulator [RN 89.5 7.2 0.00016 35.0 11.2 39 415-453 265-307 (330)
239 KOG0994 Extracellular matrix g 89.5 3.8 8.3E-05 44.7 11.1 25 423-447 1709-1733(1758)
240 KOG1853 LIS1-interacting prote 89.5 4.8 0.0001 36.0 10.1 16 353-368 54-69 (333)
241 PF15066 CAGE1: Cancer-associa 89.4 6 0.00013 38.8 11.5 60 354-413 365-424 (527)
242 KOG1003 Actin filament-coating 89.3 10 0.00022 32.7 11.6 53 364-416 17-69 (205)
243 TIGR03866 PQQ_ABC_repeats PQQ- 89.2 18 0.0004 33.5 27.1 192 62-296 84-282 (300)
244 PRK09841 cryptic autophosphory 89.1 3.9 8.4E-05 44.2 11.5 34 410-443 349-382 (726)
245 KOG0243 Kinesin-like protein [ 89.1 5.3 0.00012 43.6 12.1 17 320-336 354-370 (1041)
246 PF12329 TMF_DNA_bd: TATA elem 89.1 6.2 0.00013 28.6 8.9 19 432-450 48-66 (74)
247 KOG0266 WD40 repeat-containing 89.0 28 0.00061 35.3 21.1 192 62-291 257-454 (456)
248 PRK02889 tolB translocation pr 89.0 27 0.00058 35.0 23.0 140 79-241 264-405 (427)
249 PF06637 PV-1: PV-1 protein (P 89.0 8.1 0.00018 36.9 11.8 22 429-450 354-375 (442)
250 PF14282 FlxA: FlxA-like prote 88.9 1.2 2.5E-05 35.0 5.5 6 391-396 31-36 (106)
251 PF12128 DUF3584: Protein of u 88.8 4.7 0.0001 46.2 12.4 10 60-69 15-24 (1201)
252 PF12329 TMF_DNA_bd: TATA elem 88.8 3.4 7.3E-05 29.9 7.4 40 381-420 7-46 (74)
253 KOG0971 Microtubule-associated 88.7 4.6 9.9E-05 42.9 10.8 45 372-416 396-440 (1243)
254 PF05667 DUF812: Protein of un 88.6 3.8 8.1E-05 42.7 10.4 8 81-88 42-49 (594)
255 TIGR02680 conserved hypothetic 88.6 3.8 8.3E-05 47.4 11.5 49 379-427 276-324 (1353)
256 PRK01742 tolB translocation pr 88.5 29 0.00063 34.8 21.8 137 80-246 273-411 (429)
257 COG1382 GimC Prefoldin, chaper 88.4 9.9 0.00021 30.2 10.3 12 436-447 96-107 (119)
258 PLN00033 photosystem II stabil 88.4 28 0.0006 34.5 21.4 202 55-301 139-364 (398)
259 PF06005 DUF904: Protein of un 88.4 5.1 0.00011 28.8 8.0 30 376-405 8-37 (72)
260 PF10498 IFT57: Intra-flagella 88.4 8.3 0.00018 37.5 12.0 12 436-447 333-344 (359)
261 PRK10115 protease 2; Provision 88.3 40 0.00088 36.2 25.1 211 62-299 182-400 (686)
262 KOG0946 ER-Golgi vesicle-tethe 88.2 8.2 0.00018 40.7 12.2 42 373-414 672-713 (970)
263 PF06818 Fez1: Fez1; InterPro 88.0 7.7 0.00017 34.0 10.3 87 353-442 12-105 (202)
264 KOG1332 Vesicle coat complex C 87.9 14 0.0003 33.4 11.9 107 167-302 176-296 (299)
265 KOG0976 Rho/Rac1-interacting s 87.9 6.5 0.00014 41.2 11.2 34 389-422 326-359 (1265)
266 PF10211 Ax_dynein_light: Axon 87.9 12 0.00027 32.7 11.8 17 431-447 170-186 (189)
267 PF07106 TBPIP: Tat binding pr 87.8 2.5 5.5E-05 36.3 7.5 11 412-422 121-131 (169)
268 COG4946 Uncharacterized protei 87.7 31 0.00068 34.3 17.3 237 15-302 59-304 (668)
269 KOG2077 JNK/SAPK-associated pr 87.6 5.4 0.00012 40.1 10.2 16 450-465 434-449 (832)
270 PF04012 PspA_IM30: PspA/IM30 87.5 8.1 0.00018 34.8 11.0 42 353-394 32-73 (221)
271 TIGR02658 TTQ_MADH_Hv methylam 87.4 29 0.00064 33.7 28.4 105 16-144 28-142 (352)
272 PF05384 DegS: Sensor protein 87.3 14 0.00031 31.2 11.3 35 393-427 84-118 (159)
273 TIGR00634 recN DNA repair prot 87.2 5.1 0.00011 41.8 10.7 18 410-427 325-342 (563)
274 KOG2048 WD40 repeat protein [G 87.2 37 0.0008 35.2 15.8 142 81-247 407-559 (691)
275 PF10168 Nup88: Nuclear pore c 87.1 8.3 0.00018 41.3 12.1 6 81-86 173-178 (717)
276 PF03938 OmpH: Outer membrane 86.9 2.6 5.6E-05 35.7 7.0 22 383-404 47-68 (158)
277 PHA02562 46 endonuclease subun 86.9 7.4 0.00016 40.7 11.8 11 353-363 308-318 (562)
278 PF15070 GOLGA2L5: Putative go 86.8 5.9 0.00013 41.5 10.6 53 349-401 85-137 (617)
279 KOG1937 Uncharacterized conser 86.7 7.6 0.00016 38.0 10.3 12 432-443 346-357 (521)
280 PRK11028 6-phosphogluconolacto 86.6 31 0.00067 33.0 24.0 110 129-248 147-269 (330)
281 KOG3915 Transcription regulato 86.6 4.7 0.0001 39.3 8.9 25 393-417 528-552 (641)
282 KOG0978 E3 ubiquitin ligase in 86.5 6.8 0.00015 41.1 10.7 19 432-450 595-613 (698)
283 COG1842 PspA Phage shock prote 86.4 13 0.00028 33.5 11.3 16 428-443 124-139 (225)
284 PF03178 CPSF_A: CPSF A subuni 86.3 32 0.00069 32.9 16.4 138 63-223 42-190 (321)
285 KOG0933 Structural maintenance 86.3 11 0.00024 40.8 12.2 10 272-281 658-667 (1174)
286 COG3823 Glutamine cyclotransfe 86.2 23 0.00051 31.3 14.4 162 58-250 51-218 (262)
287 PRK13684 Ycf48-like protein; P 86.2 33 0.00073 33.1 20.2 173 89-301 119-296 (334)
288 PRK13454 F0F1 ATP synthase sub 86.2 20 0.00042 31.2 12.1 48 353-400 57-104 (181)
289 PRK13729 conjugal transfer pil 86.2 2.9 6.3E-05 41.5 7.6 11 388-398 78-88 (475)
290 PRK11546 zraP zinc resistance 86.2 5.3 0.00011 32.9 7.9 14 428-441 93-106 (143)
291 KOG3647 Predicted coiled-coil 86.0 12 0.00025 34.0 10.4 22 389-410 136-157 (338)
292 PRK13182 racA polar chromosome 86.0 7.1 0.00015 33.7 9.0 55 395-449 87-143 (175)
293 PF07926 TPR_MLP1_2: TPR/MLP1/ 85.9 18 0.00038 29.6 12.6 11 429-439 103-113 (132)
294 PRK09174 F0F1 ATP synthase sub 85.8 17 0.00037 32.3 11.7 43 355-397 81-123 (204)
295 PF13088 BNR_2: BNR repeat-lik 85.8 30 0.00064 32.1 14.4 156 58-220 114-275 (275)
296 PRK11519 tyrosine kinase; Prov 85.7 8.9 0.00019 41.4 11.8 29 413-441 352-380 (719)
297 PF07058 Myosin_HC-like: Myosi 85.7 7.6 0.00017 35.9 9.4 68 383-450 4-85 (351)
298 PF05667 DUF812: Protein of un 85.7 9.1 0.0002 39.9 11.3 47 349-395 333-379 (594)
299 KOG1899 LAR transmembrane tyro 85.7 5.3 0.00012 40.6 9.1 19 374-392 127-145 (861)
300 PRK03947 prefoldin subunit alp 85.7 12 0.00026 31.0 10.2 22 428-449 112-133 (140)
301 PF05546 She9_MDM33: She9 / Md 85.6 15 0.00032 32.3 10.7 66 354-419 12-79 (207)
302 PRK09841 cryptic autophosphory 85.6 4.7 0.0001 43.6 9.7 8 439-446 371-378 (726)
303 PRK10929 putative mechanosensi 85.5 8.2 0.00018 43.3 11.4 105 351-455 58-204 (1109)
304 KOG0288 WD40 repeat protein Ti 85.5 10 0.00022 36.7 10.5 30 372-401 41-70 (459)
305 PF04849 HAP1_N: HAP1 N-termin 85.4 11 0.00023 35.4 10.5 75 367-441 208-286 (306)
306 PF12777 MT: Microtubule-bindi 85.4 5.9 0.00013 38.5 9.4 33 370-402 13-45 (344)
307 PF15290 Syntaphilin: Golgi-lo 85.4 8.3 0.00018 35.2 9.3 34 373-406 69-102 (305)
308 PRK10803 tol-pal system protei 85.3 2.8 6E-05 38.9 6.8 34 398-431 59-92 (263)
309 PF14583 Pectate_lyase22: Olig 85.3 30 0.00065 33.8 13.8 214 57-296 41-275 (386)
310 KOG2321 WD40 repeat protein [G 85.3 35 0.00077 34.7 14.4 54 129-192 154-208 (703)
311 PRK15422 septal ring assembly 85.2 11 0.00025 27.2 8.1 31 367-397 13-43 (79)
312 PF14817 HAUS5: HAUS augmin-li 85.2 8.8 0.00019 40.2 10.9 83 375-457 82-168 (632)
313 COG1730 GIM5 Predicted prefold 85.0 13 0.00029 30.8 9.8 27 428-454 112-138 (145)
314 PF07321 YscO: Type III secret 84.9 15 0.00033 30.7 10.3 30 393-422 67-96 (152)
315 PRK04406 hypothetical protein; 84.9 8.3 0.00018 28.0 7.6 22 395-416 13-34 (75)
316 KOG0979 Structural maintenance 84.7 13 0.00027 40.4 11.7 56 372-427 643-698 (1072)
317 PF11068 YlqD: YlqD protein; 84.7 9.2 0.0002 31.2 8.6 26 428-453 64-89 (131)
318 KOG0612 Rho-associated, coiled 84.6 11 0.00024 41.7 11.5 19 58-76 143-161 (1317)
319 KOG0980 Actin-binding protein 84.5 14 0.0003 39.5 11.7 17 369-385 355-371 (980)
320 PF12777 MT: Microtubule-bindi 84.4 6.3 0.00014 38.3 9.1 51 369-419 211-261 (344)
321 COG1322 Predicted nuclease of 84.3 16 0.00035 36.5 11.9 41 423-463 156-197 (448)
322 PF10146 zf-C4H2: Zinc finger- 84.3 25 0.00054 31.8 12.1 68 379-446 32-103 (230)
323 KOG0249 LAR-interacting protei 84.2 11 0.00023 39.3 10.5 17 423-439 215-231 (916)
324 PF09738 DUF2051: Double stran 84.1 18 0.00039 34.2 11.5 19 428-446 151-169 (302)
325 KOG0999 Microtubule-associated 83.9 15 0.00033 36.9 11.2 78 373-450 44-133 (772)
326 PF15358 TSKS: Testis-specific 83.8 5.5 0.00012 38.3 7.9 30 412-441 200-231 (558)
327 KOG0994 Extracellular matrix g 83.7 8.9 0.00019 42.1 10.1 6 18-23 618-623 (1758)
328 PF09789 DUF2353: Uncharacteri 83.6 23 0.0005 33.6 11.9 25 382-406 75-99 (319)
329 PRK10780 periplasmic chaperone 83.5 6.1 0.00013 33.8 7.7 27 376-402 47-73 (165)
330 PF10205 KLRAQ: Predicted coil 83.5 16 0.00036 28.1 8.9 8 431-438 61-68 (102)
331 PF12761 End3: Actin cytoskele 83.4 15 0.00032 32.1 9.7 15 355-369 100-114 (195)
332 PF15525 DUF4652: Domain of un 83.4 29 0.00063 30.0 12.7 68 127-197 85-156 (200)
333 PRK10698 phage shock protein P 83.3 18 0.00039 32.6 10.9 38 353-390 33-70 (222)
334 PRK06231 F0F1 ATP synthase sub 83.3 30 0.00064 30.8 12.2 47 353-399 74-120 (205)
335 PF02388 FemAB: FemAB family; 83.3 4.2 9E-05 40.5 7.5 47 408-454 250-296 (406)
336 KOG0612 Rho-associated, coiled 83.3 14 0.0003 41.0 11.5 20 428-447 671-690 (1317)
337 KOG3990 Uncharacterized conser 83.3 4.6 0.0001 36.1 6.7 18 353-370 227-244 (305)
338 PF09910 DUF2139: Uncharacteri 83.2 40 0.00087 31.5 16.5 204 98-323 29-261 (339)
339 KOG1103 Predicted coiled-coil 83.1 5.4 0.00012 37.4 7.5 25 423-447 237-261 (561)
340 KOG0977 Nuclear envelope prote 83.1 10 0.00022 38.6 10.0 10 432-441 205-214 (546)
341 TIGR02977 phageshock_pspA phag 82.9 18 0.0004 32.5 10.9 26 367-392 47-72 (219)
342 KOG1937 Uncharacterized conser 82.9 17 0.00036 35.7 10.8 31 418-448 397-427 (521)
343 CHL00118 atpG ATP synthase CF0 82.9 28 0.0006 29.4 12.2 45 353-397 48-92 (156)
344 KOG0649 WD40 repeat protein [G 82.9 36 0.00079 30.8 17.4 140 54-222 118-263 (325)
345 PF07889 DUF1664: Protein of u 82.8 12 0.00026 30.3 8.4 48 376-423 72-119 (126)
346 PF06433 Me-amine-dh_H: Methyl 82.8 47 0.001 31.9 18.0 102 16-143 18-131 (342)
347 PRK01742 tolB translocation pr 82.6 56 0.0012 32.8 23.6 140 79-247 228-369 (429)
348 KOG0964 Structural maintenance 82.5 16 0.00034 39.6 11.2 42 373-414 398-439 (1200)
349 PF05335 DUF745: Protein of un 82.2 25 0.00054 30.7 10.9 52 365-416 60-111 (188)
350 TIGR01000 bacteriocin_acc bact 82.1 16 0.00036 37.0 11.4 21 430-450 290-310 (457)
351 PF10046 BLOC1_2: Biogenesis o 81.9 21 0.00045 27.5 9.3 34 408-441 50-83 (99)
352 KOG3215 Uncharacterized conser 81.9 19 0.00041 31.3 9.7 32 386-417 89-120 (222)
353 KOG0964 Structural maintenance 81.6 19 0.00041 39.0 11.5 9 270-278 134-142 (1200)
354 PF07851 TMPIT: TMPIT-like pro 81.3 6.8 0.00015 37.3 7.6 19 426-444 70-88 (330)
355 KOG0288 WD40 repeat protein Ti 81.0 15 0.00034 35.5 9.8 37 373-409 35-71 (459)
356 PF06476 DUF1090: Protein of u 81.0 23 0.00051 28.1 9.4 42 406-447 69-112 (115)
357 PRK13453 F0F1 ATP synthase sub 80.9 35 0.00077 29.3 12.2 47 353-399 44-90 (173)
358 KOG2129 Uncharacterized conser 80.9 12 0.00027 36.1 9.0 11 351-361 107-117 (552)
359 PRK14472 F0F1 ATP synthase sub 80.9 36 0.00077 29.4 12.2 48 353-400 44-91 (175)
360 TIGR01005 eps_transp_fam exopo 80.9 11 0.00025 40.9 10.4 56 392-447 344-399 (754)
361 PF06810 Phage_GP20: Phage min 80.8 15 0.00033 31.0 8.9 47 377-423 18-67 (155)
362 PF06810 Phage_GP20: Phage min 80.7 13 0.00029 31.3 8.5 9 379-387 34-42 (155)
363 KOG4673 Transcription factor T 80.7 26 0.00055 36.4 11.6 11 19-29 34-44 (961)
364 PF13863 DUF4200: Domain of un 80.6 28 0.00061 28.0 12.2 19 429-447 86-104 (126)
365 PF10205 KLRAQ: Predicted coil 80.5 14 0.0003 28.4 7.6 21 428-448 51-71 (102)
366 PF10267 Tmemb_cc2: Predicted 80.4 21 0.00046 35.0 10.8 106 339-444 207-329 (395)
367 PF08657 DASH_Spc34: DASH comp 80.4 3.4 7.3E-05 38.1 5.2 37 369-405 177-213 (259)
368 KOG4603 TBP-1 interacting prot 80.4 15 0.00033 30.8 8.4 49 375-423 89-139 (201)
369 PF09738 DUF2051: Double stran 80.3 21 0.00046 33.7 10.5 52 375-426 115-166 (302)
370 PF13870 DUF4201: Domain of un 80.2 38 0.00082 29.2 12.6 28 373-400 43-70 (177)
371 KOG4643 Uncharacterized coiled 80.0 25 0.00053 38.3 11.7 105 351-456 460-568 (1195)
372 TIGR02658 TTQ_MADH_Hv methylam 79.8 62 0.0013 31.5 17.1 121 63-195 13-142 (352)
373 COG1842 PspA Phage shock prote 79.7 43 0.00093 30.2 11.8 21 428-448 117-137 (225)
374 CHL00019 atpF ATP synthase CF0 79.7 41 0.00088 29.3 12.2 45 354-398 51-95 (184)
375 PF04949 Transcrip_act: Transc 79.7 23 0.00049 29.1 8.9 72 381-452 33-105 (159)
376 KOG3647 Predicted coiled-coil 79.7 23 0.0005 32.2 9.8 45 383-427 116-160 (338)
377 PRK11281 hypothetical protein; 79.6 16 0.00034 41.3 10.8 27 391-417 126-152 (1113)
378 TIGR02894 DNA_bind_RsfA transc 79.5 23 0.0005 29.7 9.2 35 390-424 101-135 (161)
379 KOG1003 Actin filament-coating 79.5 41 0.00089 29.2 11.8 21 428-448 162-182 (205)
380 PF13088 BNR_2: BNR repeat-lik 79.4 53 0.0011 30.4 20.8 230 25-275 30-275 (275)
381 KOG0982 Centrosomal protein Nu 79.4 44 0.00095 32.7 12.2 24 373-396 298-321 (502)
382 PF05700 BCAS2: Breast carcino 79.3 19 0.00041 32.4 9.7 90 357-449 128-221 (221)
383 PF12795 MscS_porin: Mechanose 79.3 31 0.00068 31.5 11.3 26 359-384 39-64 (240)
384 PF14257 DUF4349: Domain of un 79.3 6.3 0.00014 36.6 6.8 63 387-450 126-188 (262)
385 PF05266 DUF724: Protein of un 79.2 23 0.0005 31.0 9.8 33 390-422 114-146 (190)
386 PRK13460 F0F1 ATP synthase sub 79.1 41 0.00088 28.9 12.2 48 353-400 42-89 (173)
387 PRK14474 F0F1 ATP synthase sub 79.0 46 0.00099 30.7 12.2 43 354-396 32-74 (250)
388 PF03961 DUF342: Protein of un 79.0 11 0.00024 38.1 9.0 21 428-448 386-406 (451)
389 PF14362 DUF4407: Domain of un 78.9 44 0.00095 31.7 12.6 26 375-400 138-163 (301)
390 PF05266 DUF724: Protein of un 78.9 26 0.00056 30.7 9.9 62 385-446 116-181 (190)
391 PF05278 PEARLI-4: Arabidopsis 78.8 36 0.00078 31.3 11.1 33 391-423 198-230 (269)
392 TIGR03495 phage_LysB phage lys 78.7 25 0.00055 28.7 9.1 50 376-425 23-72 (135)
393 PF10211 Ax_dynein_light: Axon 78.2 47 0.001 29.1 11.5 30 398-427 125-154 (189)
394 PF14197 Cep57_CLD_2: Centroso 78.2 18 0.0004 25.7 7.3 66 362-427 2-67 (69)
395 PF14723 SSFA2_C: Sperm-specif 78.0 24 0.00051 29.9 8.8 65 393-457 105-178 (179)
396 TIGR02231 conserved hypothetic 78.0 15 0.00032 38.1 9.7 78 379-456 71-177 (525)
397 PF14992 TMCO5: TMCO5 family 78.0 11 0.00024 34.8 7.6 94 345-442 85-178 (280)
398 PF10267 Tmemb_cc2: Predicted 78.0 46 0.00099 32.8 12.3 109 353-462 214-335 (395)
399 PRK14011 prefoldin subunit alp 77.9 33 0.00071 28.5 9.8 105 356-460 1-142 (144)
400 cd00632 Prefoldin_beta Prefold 77.9 20 0.00042 28.0 8.2 81 348-428 10-105 (105)
401 PF03938 OmpH: Outer membrane 77.9 14 0.0003 31.2 8.0 84 367-450 24-109 (158)
402 PF03961 DUF342: Protein of un 77.9 13 0.00028 37.7 9.0 69 381-449 329-407 (451)
403 PF08647 BRE1: BRE1 E3 ubiquit 77.8 29 0.00063 26.6 10.1 88 363-450 1-88 (96)
404 PF05701 WEMBL: Weak chloropla 77.7 28 0.0006 36.0 11.5 102 351-452 302-407 (522)
405 PF08581 Tup_N: Tup N-terminal 77.7 25 0.00055 25.8 8.4 69 374-442 6-75 (79)
406 PF00846 Hanta_nucleocap: Hant 77.7 18 0.00039 34.8 9.0 69 388-456 4-74 (428)
407 PRK07720 fliJ flagellar biosyn 77.5 35 0.00075 28.4 10.2 78 376-453 6-100 (146)
408 PRK01156 chromosome segregatio 77.4 30 0.00064 38.6 12.5 107 346-452 161-270 (895)
409 COG3206 GumC Uncharacterized p 77.3 25 0.00054 35.7 11.0 113 350-462 298-411 (458)
410 PRK11519 tyrosine kinase; Prov 77.3 20 0.00043 38.7 10.8 110 356-466 302-411 (719)
411 PF09744 Jnk-SapK_ap_N: JNK_SA 77.3 44 0.00095 28.3 10.5 101 352-455 51-155 (158)
412 KOG3850 Predicted membrane pro 77.2 31 0.00067 33.2 10.4 115 353-467 266-390 (455)
413 TIGR01541 tape_meas_lam_C phag 77.1 49 0.0011 31.9 12.1 108 347-454 16-146 (332)
414 PRK01156 chromosome segregatio 77.0 31 0.00067 38.4 12.5 104 350-453 175-278 (895)
415 KOG3091 Nuclear pore complex, 77.0 11 0.00024 37.5 7.7 103 346-448 350-452 (508)
416 KOG0243 Kinesin-like protein [ 77.0 40 0.00088 37.2 12.5 101 352-452 442-542 (1041)
417 TIGR02338 gimC_beta prefoldin, 76.9 34 0.00074 26.9 9.8 85 349-433 1-107 (110)
418 PRK04325 hypothetical protein; 76.9 13 0.00027 27.0 6.3 53 375-427 5-57 (74)
419 TIGR03321 alt_F1F0_F0_B altern 76.9 44 0.00095 30.7 11.5 91 353-443 31-124 (246)
420 PRK10929 putative mechanosensi 76.8 30 0.00064 39.0 11.9 108 349-456 178-290 (1109)
421 PF14988 DUF4515: Domain of un 76.8 54 0.0012 29.1 11.5 94 353-446 6-100 (206)
422 KOG4643 Uncharacterized coiled 76.8 35 0.00076 37.2 11.7 101 347-447 439-539 (1195)
423 PF05622 HOOK: HOOK protein; 76.8 0.79 1.7E-05 49.3 0.0 109 348-456 243-364 (713)
424 PF14197 Cep57_CLD_2: Centroso 76.7 24 0.00053 25.1 9.0 65 389-453 1-69 (69)
425 TIGR03545 conserved hypothetic 76.7 11 0.00024 39.1 8.1 96 360-456 152-251 (555)
426 PRK09343 prefoldin subunit bet 76.7 37 0.00081 27.2 10.0 85 349-433 5-111 (121)
427 PF09789 DUF2353: Uncharacteri 76.6 21 0.00046 33.9 9.3 90 359-448 66-164 (319)
428 KOG3598 Thyroid hormone recept 76.5 9.4 0.0002 42.9 7.7 105 350-454 2087-2201(2220)
429 KOG4196 bZIP transcription fac 76.5 15 0.00034 29.3 7.0 65 350-414 46-116 (135)
430 KOG4809 Rab6 GTPase-interactin 76.3 40 0.00086 34.1 11.3 110 347-456 334-453 (654)
431 PF05377 FlaC_arch: Flagella a 76.3 8.6 0.00019 25.8 4.7 40 380-419 1-40 (55)
432 PF07111 HCR: Alpha helical co 76.2 56 0.0012 34.3 12.6 103 351-453 514-625 (739)
433 KOG0972 Huntingtin interacting 76.2 56 0.0012 30.2 11.4 104 344-450 220-327 (384)
434 PF05700 BCAS2: Breast carcino 76.2 33 0.00071 30.9 10.3 83 374-456 138-221 (221)
435 PF08172 CASP_C: CASP C termin 76.2 24 0.00052 32.4 9.3 86 367-455 1-131 (248)
436 PF10828 DUF2570: Protein of u 76.1 19 0.00041 28.4 7.7 68 361-428 21-88 (110)
437 PF04799 Fzo_mitofusin: fzo-li 76.1 22 0.00048 30.3 8.4 69 390-458 102-171 (171)
438 PF15397 DUF4618: Domain of un 76.1 32 0.00069 31.6 10.0 87 370-456 58-163 (258)
439 PF04102 SlyX: SlyX; InterPro 76.0 14 0.00031 26.2 6.3 48 404-451 1-52 (69)
440 PRK11546 zraP zinc resistance 75.9 34 0.00074 28.3 9.2 63 392-454 46-119 (143)
441 PRK02793 phi X174 lysis protei 75.8 14 0.00031 26.5 6.3 55 373-427 2-56 (72)
442 PF12004 DUF3498: Domain of un 75.8 0.87 1.9E-05 45.7 0.0 111 346-456 371-490 (495)
443 PF05529 Bap31: B-cell recepto 75.8 14 0.0003 32.5 7.7 70 376-448 122-192 (192)
444 KOG2412 Nuclear-export-signal 75.8 45 0.00098 33.8 11.5 100 353-452 177-276 (591)
445 PLN02919 haloacid dehalogenase 75.7 1.5E+02 0.0033 33.7 31.7 252 15-296 590-891 (1057)
446 PF14723 SSFA2_C: Sperm-specif 75.7 14 0.00029 31.3 6.8 69 372-440 105-179 (179)
447 PRK00846 hypothetical protein; 75.7 15 0.00033 26.7 6.3 53 375-427 9-61 (77)
448 KOG4571 Activating transcripti 75.6 15 0.00032 34.0 7.7 69 369-437 224-292 (294)
449 PRK07353 F0F1 ATP synthase sub 75.5 44 0.00095 27.5 12.2 95 353-447 31-128 (140)
450 PRK02119 hypothetical protein; 75.5 15 0.00034 26.4 6.4 56 379-434 2-57 (73)
451 PF10174 Cast: RIM-binding pro 75.4 42 0.00091 36.3 12.2 99 351-449 301-410 (775)
452 COG2882 FliJ Flagellar biosynt 75.2 47 0.001 27.7 12.1 110 346-455 18-142 (148)
453 PF09787 Golgin_A5: Golgin sub 75.2 34 0.00074 35.3 11.3 105 349-453 212-335 (511)
454 PRK02793 phi X174 lysis protei 75.0 28 0.00061 25.0 7.6 55 387-444 2-56 (72)
455 PF11068 YlqD: YlqD protein; 75.0 20 0.00043 29.2 7.6 65 381-445 22-88 (131)
456 KOG0281 Beta-TrCP (transducin 75.0 29 0.00063 33.0 9.5 192 54-294 234-429 (499)
457 TIGR03495 phage_LysB phage lys 74.9 26 0.00056 28.7 8.2 82 387-469 20-101 (135)
458 TIGR00634 recN DNA repair prot 74.9 21 0.00045 37.4 9.8 107 347-453 269-375 (563)
459 KOG4552 Vitamin-D-receptor int 74.8 57 0.0012 28.5 10.6 100 347-446 21-121 (272)
460 KOG3990 Uncharacterized conser 74.7 14 0.0003 33.2 7.0 64 388-451 227-294 (305)
461 PF07544 Med9: RNA polymerase 74.7 9 0.0002 28.5 5.2 60 394-453 22-81 (83)
462 PF09849 DUF2076: Uncharacteri 74.6 19 0.00042 32.9 8.3 72 390-461 4-85 (247)
463 PF09910 DUF2139: Uncharacteri 74.6 76 0.0017 29.8 20.8 205 47-276 30-266 (339)
464 PF09730 BicD: Microtubule-ass 74.5 49 0.0011 35.3 12.2 105 348-452 66-177 (717)
465 PRK11281 hypothetical protein; 74.5 31 0.00066 39.0 11.3 112 342-453 119-249 (1113)
466 PHA01750 hypothetical protein 74.5 9 0.00019 26.4 4.5 36 391-426 40-75 (75)
467 PF15254 CCDC14: Coiled-coil d 74.5 40 0.00088 35.7 11.2 98 356-453 439-544 (861)
468 TIGR03545 conserved hypothetic 74.4 16 0.00035 37.8 8.7 107 350-457 163-270 (555)
469 PF14073 Cep57_CLD: Centrosome 74.4 55 0.0012 28.1 11.6 106 349-454 2-136 (178)
470 TIGR00998 8a0101 efflux pump m 74.4 29 0.00062 33.4 10.2 89 368-456 76-171 (334)
471 PF05701 WEMBL: Weak chloropla 74.4 41 0.00088 34.8 11.6 100 353-452 283-386 (522)
472 KOG0240 Kinesin (SMY1 subfamil 74.3 41 0.0009 34.3 11.0 109 347-455 417-530 (607)
473 PF07200 Mod_r: Modifier of ru 74.3 43 0.00093 28.0 9.9 81 367-447 29-115 (150)
474 PRK11020 hypothetical protein; 74.2 22 0.00047 27.7 7.1 60 397-456 2-63 (118)
475 PRK09510 tolA cell envelope in 74.2 20 0.00043 35.1 8.7 69 388-456 61-133 (387)
476 PF10212 TTKRSYEDQ: Predicted 74.2 58 0.0013 33.0 12.0 98 354-451 416-514 (518)
477 PRK13455 F0F1 ATP synthase sub 74.0 59 0.0013 28.3 11.7 92 356-447 56-150 (184)
478 PF08657 DASH_Spc34: DASH comp 74.0 26 0.00056 32.4 9.0 64 388-451 175-259 (259)
479 KOG3859 Septins (P-loop GTPase 74.0 50 0.0011 30.6 10.5 93 336-444 310-404 (406)
480 KOG2010 Double stranded RNA bi 73.9 14 0.0003 34.5 7.1 60 373-432 148-207 (405)
481 PRK00295 hypothetical protein; 73.7 29 0.00064 24.6 7.8 51 391-444 3-53 (68)
482 PF12004 DUF3498: Domain of un 73.7 1.1 2.3E-05 45.1 0.0 85 369-453 366-455 (495)
483 KOG4673 Transcription factor T 73.7 47 0.001 34.6 11.3 103 353-455 455-569 (961)
484 KOG0241 Kinesin-like protein [ 73.5 21 0.00045 38.6 9.0 127 312-448 305-435 (1714)
485 PF15358 TSKS: Testis-specific 73.5 21 0.00046 34.5 8.4 94 362-455 129-231 (558)
486 PRK08475 F0F1 ATP synthase sub 73.5 58 0.0012 27.9 12.4 97 353-449 48-149 (167)
487 KOG3598 Thyroid hormone recept 73.4 4.5 9.8E-05 45.2 4.5 100 355-456 2085-2190(2220)
488 PF05917 DUF874: Helicobacter 73.3 21 0.00046 32.7 8.0 87 369-455 124-211 (398)
489 PF14817 HAUS5: HAUS augmin-li 73.3 45 0.00097 35.1 11.5 92 354-445 75-166 (632)
490 PRK15335 type III secretion sy 73.2 46 0.00099 26.6 9.8 95 351-445 37-145 (147)
491 KOG4674 Uncharacterized conser 73.2 42 0.00092 39.4 12.0 107 345-451 1230-1341(1822)
492 smart00284 OLF Olfactomedin-li 73.1 77 0.0017 29.2 19.3 186 1-221 37-241 (255)
493 PLN00033 photosystem II stabil 73.1 1E+02 0.0022 30.6 22.0 199 25-277 166-388 (398)
494 KOG4378 Nuclear protein COP1 [ 72.9 1.1E+02 0.0024 30.8 14.1 187 1-242 92-283 (673)
495 PF15556 Zwint: ZW10 interacto 72.8 64 0.0014 28.1 12.5 107 348-454 74-182 (252)
496 KOG1144 Translation initiation 72.8 22 0.00048 37.5 8.9 88 374-461 216-307 (1064)
497 KOG4005 Transcription factor X 72.5 19 0.00042 32.0 7.3 69 350-418 89-157 (292)
498 KOG4603 TBP-1 interacting prot 72.4 34 0.00075 28.8 8.4 76 364-439 78-167 (201)
499 KOG4848 Extracellular matrix-a 72.4 60 0.0013 28.0 9.9 88 351-438 125-224 (225)
500 PRK10803 tol-pal system protei 72.4 12 0.00026 34.7 6.6 68 356-423 38-105 (263)
No 1
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=3.4e-42 Score=345.96 Aligned_cols=304 Identities=20% Similarity=0.304 Sum_probs=244.1
Q ss_pred CEEEcccCCCcccCCceEEE--EccC----CceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCC
Q 012184 1 MLLRCSIRNYTLLEGVVMVF--DLRS----LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK 74 (469)
Q Consensus 1 l~~~GG~~~~~~~~~~~~~~--d~~~----~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~ 74 (469)
|+.|+|.... .++ .+-+| +|.+ ++|..+.+.+.. |.+|.+|+++++++.||++||....
T Consensus 123 ivgf~G~~~~-~~~-~ig~y~~~~~~~~~~~~W~~~~~~~~~-------------P~pR~~h~~~~~~~~iyv~GG~~~~ 187 (470)
T PLN02193 123 IVGFHGRSTD-VLH-SLGAYISLPSTPKLLGKWIKVEQKGEG-------------PGLRCSHGIAQVGNKIYSFGGEFTP 187 (470)
T ss_pred EEEEeccCCC-cEE-eeEEEEecCCChhhhceEEEcccCCCC-------------CCCccccEEEEECCEEEEECCcCCC
Confidence 3556675433 344 44444 6644 899999887544 8899999999999999999997543
Q ss_pred C-CCcceEEEEECCCCeEEEeecCCCCCC-CCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCC
Q 012184 75 S-SDSMIVRFIDLETNLCGVMETSGKVPV-ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP 152 (469)
Q Consensus 75 ~-~~~~~~~~~d~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p 152 (469)
. ...+++|+||+.+++|..+++.+++|. +|.+|++++++++||+|||..... .++++++||+.+++|+.+.+.+..|
T Consensus 188 ~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P 266 (470)
T PLN02193 188 NQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGP 266 (470)
T ss_pred CCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCC
Confidence 3 244679999999999999887766665 467899999999999999987654 5899999999999999998766668
Q ss_pred CCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcce
Q 012184 153 APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQE 232 (469)
Q Consensus 153 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d 232 (469)
.+|++|+++++ +++||||||.+....++++++||+.+++|+.+...+.+|.+|..|+++.+++++||+||.++. ..++
T Consensus 267 ~~R~~h~~~~~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-~~~d 344 (470)
T PLN02193 267 TPRSFHSMAAD-EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EVDD 344 (470)
T ss_pred CCccceEEEEE-CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-ccCc
Confidence 99999999888 678999999987777899999999999999987666678899999999999999999997653 3689
Q ss_pred EEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCC----------CCCceEEEEECCCCCCCCccc
Q 012184 233 TIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG----------KYNNEVFVMRLKPRDIPRPKI 302 (469)
Q Consensus 233 ~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~----------~~~~~~~~~d~~~~~w~~~~~ 302 (469)
+++||+.+++|+.++.+ +..|.+|.+|+++.+ +++||||||... ...+++|+||+.++.|..+..
T Consensus 345 v~~yD~~t~~W~~~~~~-g~~P~~R~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 345 VHYYDPVQDKWTQVETF-GVRPSERSVFASAAV----GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred eEEEECCCCEEEEeccC-CCCCCCcceeEEEEE----CCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEccc
Confidence 99999999999998754 345678888887766 789999999752 245789999999999998775
Q ss_pred c------CCCchhhcchhh-----hHHHhhcccccc
Q 012184 303 F------QSPAAAAAAASV-----TAAYALAKSEKL 327 (469)
Q Consensus 303 ~------~~~~~~~~~~~~-----~~~~~~gg~~~~ 327 (469)
+ |.++.+++++.. ..+++|||....
T Consensus 420 ~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~ 455 (470)
T PLN02193 420 FGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPT 455 (470)
T ss_pred CCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCc
Confidence 4 344444432221 348889988643
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.6e-42 Score=349.52 Aligned_cols=266 Identities=22% Similarity=0.301 Sum_probs=241.0
Q ss_pred CEEEcccCC-CcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcc
Q 012184 1 MLLRCSIRN-YTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM 79 (469)
Q Consensus 1 l~~~GG~~~-~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~ 79 (469)
||++||..+ +..++ .+..|||.++.|..+.++ |.+|..+++++++|.||++||++......+
T Consensus 287 l~~vGG~~~~~~~~~-~ve~yd~~~~~w~~~a~m----------------~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~ 349 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLR-SVECYDPKTNEWSSLAPM----------------PSPRCRVGVAVLNGKLYVVGGYDSGSDRLS 349 (571)
T ss_pred EEEECCCCCCCcccc-eeEEecCCcCcEeecCCC----------------CcccccccEEEECCEEEEEccccCCCcccc
Confidence 589999886 67777 999999999999999999 789999999999999999999985444778
Q ss_pred eEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCce
Q 012184 80 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS 159 (469)
Q Consensus 80 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~ 159 (469)
++++||+.+++|..++ +|+.+|.+++++++++.||++||.++.. ..+++++||+.+++|..+. +++.+|++|+
T Consensus 350 ~ve~YD~~~~~W~~~a---~M~~~R~~~~v~~l~g~iYavGG~dg~~-~l~svE~YDp~~~~W~~va---~m~~~r~~~g 422 (571)
T KOG4441|consen 350 SVERYDPRTNQWTPVA---PMNTKRSDFGVAVLDGKLYAVGGFDGEK-SLNSVECYDPVTNKWTPVA---PMLTRRSGHG 422 (571)
T ss_pred eEEEecCCCCceeccC---CccCccccceeEEECCEEEEEecccccc-ccccEEEecCCCCcccccC---CCCcceeeeE
Confidence 8999999999999999 8999999999999999999999999654 6899999999999999986 7788999999
Q ss_pred EEEEcCcEEEEEecCCCCc-ccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEEC
Q 012184 160 AALHANRYLIVFGGCSHSI-FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNM 238 (469)
Q Consensus 160 ~~~~~~~~l~v~GG~~~~~-~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~ 238 (469)
++++ +++||++||.+... +++++++|||.+++|+.++ +++.+|.+|+++.++++||++||+++......+..||+
T Consensus 423 v~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~---~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp 498 (571)
T KOG4441|consen 423 VAVL-GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA---PMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDP 498 (571)
T ss_pred EEEE-CCEEEEEcCcCCCccccceEEEEcCCCCceeecC---CcccccccceEEEECCEEEEECCccCCCccceEEEEcC
Confidence 9999 77899999988776 8999999999999999975 89999999999999999999999988666778999999
Q ss_pred CCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC-CCceEEEEECCCCCCCCccc
Q 012184 239 TKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPKI 302 (469)
Q Consensus 239 ~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~d~~~~~w~~~~~ 302 (469)
.+++|+.+++++ .+|..+.+++. ++.+|++||+++. ..+.+..||+.+++|.....
T Consensus 499 ~~~~W~~v~~m~----~~rs~~g~~~~----~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 499 ETNQWTMVAPMT----SPRSAVGVVVL----GGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred CCCceeEcccCc----cccccccEEEE----CCEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence 999999997664 44566777777 8899999999876 67889999999999998887
No 3
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=3.6e-41 Score=338.50 Aligned_cols=276 Identities=19% Similarity=0.245 Sum_probs=228.9
Q ss_pred CEEEcccCC-C-cccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCC-CCcCeeeEEECCEEEEEccccCCCCC
Q 012184 1 MLLRCSIRN-Y-TLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLP-PMSDHCMVKWGTKLLILGGHYKKSSD 77 (469)
Q Consensus 1 l~~~GG~~~-~-~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~-~r~~~~~~~~~~~iy~~GG~~~~~~~ 77 (469)
|||+||... + ...+ ++++||+.+++|+.+++++.. |. +|.+|++++++++||+|||+.... .
T Consensus 178 iyv~GG~~~~~~~~~~-~v~~yD~~~~~W~~~~~~g~~-------------P~~~~~~~~~v~~~~~lYvfGG~~~~~-~ 242 (470)
T PLN02193 178 IYSFGGEFTPNQPIDK-HLYVFDLETRTWSISPATGDV-------------PHLSCLGVRMVSIGSTLYVFGGRDASR-Q 242 (470)
T ss_pred EEEECCcCCCCCCeeC-cEEEEECCCCEEEeCCCCCCC-------------CCCcccceEEEEECCEEEEECCCCCCC-C
Confidence 699999642 2 2345 899999999999988776422 43 578999999999999999987543 5
Q ss_pred cceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCC
Q 012184 78 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD 157 (469)
Q Consensus 78 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~ 157 (469)
++++|+||+.+++|+.+++.+..|.+|.+|++++++++||+|||.+... ..+++++||+.+++|+.+++.+.+|.+|.+
T Consensus 243 ~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~ 321 (470)
T PLN02193 243 YNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA-RLKTLDSYNIVDKKWFHCSTPGDSFSIRGG 321 (470)
T ss_pred CccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC-CcceEEEEECCCCEEEeCCCCCCCCCCCCC
Confidence 7889999999999999986555589999999999999999999987644 578999999999999999877778889999
Q ss_pred ceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCC---------C
Q 012184 158 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN---------N 228 (469)
Q Consensus 158 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~---------~ 228 (469)
|+++++ +++||++||.+.. ..+++++||+.+++|+.+...+..|.+|..|+++.++++||||||.... .
T Consensus 322 ~~~~~~-~gkiyviGG~~g~-~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 399 (470)
T PLN02193 322 AGLEVV-QGKVWVVYGFNGC-EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQ 399 (470)
T ss_pred cEEEEE-CCcEEEEECCCCC-ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccc
Confidence 999988 6679999997643 4689999999999999988666779999999999999999999997431 2
Q ss_pred CcceEEEEECCCCcEEEeccCCC--CCCCCCCCcceEEEEEcCCcEEEEEeccC--CCCCceEEEEECCC
Q 012184 229 GCQETIVLNMTKLAWSILTSVKG--RNPLASEGLSVCSAIIEGEHHLVAFGGYN--GKYNNEVFVMRLKP 294 (469)
Q Consensus 229 ~~~d~~~~d~~~~~W~~~~~~~~--~~p~~r~~~s~~~~~~~~~~~l~v~GG~~--~~~~~~~~~~d~~~ 294 (469)
..+++|.||+.+.+|+.++.+.. ..|.+|..|+++...+.+++.||+|||.+ +...+|+|+|++++
T Consensus 400 ~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~~ 469 (470)
T PLN02193 400 LTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGIDS 469 (470)
T ss_pred eeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecCC
Confidence 35789999999999999876543 45677777766555566566799999995 45789999998754
No 4
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.5e-40 Score=322.66 Aligned_cols=276 Identities=18% Similarity=0.226 Sum_probs=218.6
Q ss_pred CEEEcccCC--CcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCC-CCcCeeeEEECCEEEEEccccCCCCC
Q 012184 1 MLLRCSIRN--YTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLP-PMSDHCMVKWGTKLLILGGHYKKSSD 77 (469)
Q Consensus 1 l~~~GG~~~--~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~-~r~~~~~~~~~~~iy~~GG~~~~~~~ 77 (469)
|||+||... ....+ ++++||+.+++|+.+++++.. |. .+.+|++++++++||+|||..... .
T Consensus 35 iyv~GG~~~~~~~~~~-~~~~yd~~~~~W~~~~~~~~~-------------p~~~~~~~~~~~~~~~iyv~GG~~~~~-~ 99 (341)
T PLN02153 35 LYSFGGELKPNEHIDK-DLYVFDFNTHTWSIAPANGDV-------------PRISCLGVRMVAVGTKLYIFGGRDEKR-E 99 (341)
T ss_pred EEEECCccCCCCceeC-cEEEEECCCCEEEEcCccCCC-------------CCCccCceEEEEECCEEEEECCCCCCC-c
Confidence 699999743 23456 999999999999998887422 33 456899999999999999986544 4
Q ss_pred cceEEEEECCCCeEEEeecC--CCCCCCCcceEEEEECCEEEEEeccCCCC-----CccCcEEEEECCCCeEEEeeeCCC
Q 012184 78 SMIVRFIDLETNLCGVMETS--GKVPVARGGHSVTLVGSRLIIFGGEDRSR-----KLLNDVHFLDLETMTWDAVEVTQT 150 (469)
Q Consensus 78 ~~~~~~~d~~t~~W~~~~~~--g~~p~~r~~~~~~~~~~~lyi~GG~~~~~-----~~~~~v~~~d~~t~~W~~~~~~g~ 150 (469)
.+++++||+.+++|+.++.. ...|.+|.+|++++++++||||||.+... ..++++++||+.+++|+.+++.+.
T Consensus 100 ~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~ 179 (341)
T PLN02153 100 FSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGE 179 (341)
T ss_pred cCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCC
Confidence 67899999999999998732 12388999999999999999999986432 235789999999999999987766
Q ss_pred CCCCCCCceEEEEcCcEEEEEecCCC--------CcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEe
Q 012184 151 PPAPRYDHSAALHANRYLIVFGGCSH--------SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVG 222 (469)
Q Consensus 151 ~p~~r~~~~~~~~~~~~l~v~GG~~~--------~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~G 222 (469)
.|.+|.+|+++++ +++|||+||... ....+++++||+.+++|+.+...+.+|.+|..|+++.++++|||||
T Consensus 180 ~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~G 258 (341)
T PLN02153 180 NFEKRGGAGFAVV-QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFG 258 (341)
T ss_pred CCCCCCcceEEEE-CCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEEC
Confidence 6789999999888 667999998642 1236889999999999999987777899999999999999999999
Q ss_pred cCCC---------CCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC--CCceEEEEE
Q 012184 223 GGDN---------NNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK--YNNEVFVMR 291 (469)
Q Consensus 223 G~~~---------~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~--~~~~~~~~d 291 (469)
|... ....+++|.||+.+..|+.+.... ..|.+|..+..+.+++.+++.|||+||.+.. ..+|+|.|+
T Consensus 259 G~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~-~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~~ 337 (341)
T PLN02153 259 GEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECG-EPAMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFYA 337 (341)
T ss_pred cccCCccccccccccccccEEEEEcCccEEEeccCCC-CCCCCCccccccccccCCcceEEEEcCcCCCCccccceEEEe
Confidence 9631 123579999999999999986432 2234444444444455556799999999653 678999997
Q ss_pred CC
Q 012184 292 LK 293 (469)
Q Consensus 292 ~~ 293 (469)
+.
T Consensus 338 ~~ 339 (341)
T PLN02153 338 VN 339 (341)
T ss_pred cc
Confidence 63
No 5
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=3.3e-41 Score=291.45 Aligned_cols=271 Identities=24% Similarity=0.403 Sum_probs=233.1
Q ss_pred CEEEcccCCCcccCC----ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCC
Q 012184 1 MLLRCSIRNYTLLEG----VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS 76 (469)
Q Consensus 1 l~~~GG~~~~~~~~~----~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~ 76 (469)
||-|||.-.+..... ++.+|+..+-+|+.+++.... +.-...++..|.-|++|+++.+.+++|+|||.+....
T Consensus 26 iYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~k---a~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~eg 102 (392)
T KOG4693|consen 26 IYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITK---ATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEG 102 (392)
T ss_pred EEecCCcccccccccCCcceeEEeeccceeEEecCccccc---ccccCCCCccchhhcCceEEEEcceEEEEcCccCccc
Confidence 588999755421110 589999999999999984322 1111224677888999999999999999999998877
Q ss_pred CcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCC-CCccCcEEEEECCCCeEEEeeeCCCCCCCC
Q 012184 77 DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRS-RKLLNDVHFLDLETMTWDAVEVTQTPPAPR 155 (469)
Q Consensus 77 ~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~-~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r 155 (469)
..|.++.||+.++.|.+...+|-.|.+|.+|+++++++.+|||||+... .+++++++.+|++|.+|+.+.+.|.+|.=|
T Consensus 103 aCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR 182 (392)
T KOG4693|consen 103 ACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWR 182 (392)
T ss_pred ccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhh
Confidence 8999999999999999999999999999999999999999999999653 458999999999999999999999999999
Q ss_pred CCceEEEEcCcEEEEEecCCCC---------cccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCC
Q 012184 156 YDHSAALHANRYLIVFGGCSHS---------IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDN 226 (469)
Q Consensus 156 ~~~~~~~~~~~~l~v~GG~~~~---------~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~ 226 (469)
..|+++++ ++.+|||||.+.. .+++.|-.||+.|+.|......+-.|.+|..|++...++.+|+|||+++
T Consensus 183 DFH~a~~~-~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng 261 (392)
T KOG4693|consen 183 DFHTASVI-DGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNG 261 (392)
T ss_pred hhhhhhhc-cceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccch
Confidence 99999999 5789999997532 4578899999999999998777788999999999999999999999876
Q ss_pred CC--CcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccC
Q 012184 227 NN--GCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN 280 (469)
Q Consensus 227 ~~--~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~ 280 (469)
.- .++|+|.||+.+..|..+.. .+..|.+|..+++++. ++++|+|||-.
T Consensus 262 ~ln~HfndLy~FdP~t~~W~~I~~-~Gk~P~aRRRqC~~v~----g~kv~LFGGTs 312 (392)
T KOG4693|consen 262 TLNVHFNDLYCFDPKTSMWSVISV-RGKYPSARRRQCSVVS----GGKVYLFGGTS 312 (392)
T ss_pred hhhhhhcceeecccccchheeeec-cCCCCCcccceeEEEE----CCEEEEecCCC
Confidence 43 48999999999999999854 6778899999887777 88999999964
No 6
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=3e-41 Score=291.72 Aligned_cols=270 Identities=25% Similarity=0.404 Sum_probs=232.0
Q ss_pred CCCcCeeeEEECCEEEEEccccCCCC----CcceEEEEECCCCeEEEeec--C-----C---CCCCCCcceEEEEECCEE
Q 012184 51 PPMSDHCMVKWGTKLLILGGHYKKSS----DSMIVRFIDLETNLCGVMET--S-----G---KVPVARGGHSVTLVGSRL 116 (469)
Q Consensus 51 ~~r~~~~~~~~~~~iy~~GG~~~~~~----~~~~~~~~d~~t~~W~~~~~--~-----g---~~p~~r~~~~~~~~~~~l 116 (469)
+.|..|+++.+|.+||-|||+|.... ..-+|.++|..+.+|+++++ + + ..|.-|.+|+++.+++++
T Consensus 12 PrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~ 91 (392)
T KOG4693|consen 12 PRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKA 91 (392)
T ss_pred cccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceE
Confidence 47899999999999999999998653 34579999999999999875 1 1 246679999999999999
Q ss_pred EEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCC--CcccCcEEEEECCCCceE
Q 012184 117 IIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH--SIFFNDLHVLDLQTNEWS 194 (469)
Q Consensus 117 yi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~--~~~~~~i~~~d~~~~~W~ 194 (469)
|+.||.++....+|-+|.||+.++.|+++.++|-.|.+|.+|++|++ ++.+|||||+.. ..++++++.+|++|.+|.
T Consensus 92 yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~-gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr 170 (392)
T KOG4693|consen 92 YVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVW-GNQMYIFGGYEEDAQRFSQDTHVLDFATMTWR 170 (392)
T ss_pred EEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEE-CcEEEEecChHHHHHhhhccceeEeccceeee
Confidence 99999998777899999999999999999999999999999999999 556999999854 467899999999999999
Q ss_pred eeeecCCCCCCCcceEEEEECCEEEEEecCCCC---------CCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEE
Q 012184 195 QPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN---------NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSA 265 (469)
Q Consensus 195 ~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~---------~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~ 265 (469)
.+.+.+++|.-|.+|+++.+++.+|||||.... ...+.+..+|+.++.|...++ ....|..|..||....
T Consensus 171 ~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~-~~~~P~GRRSHS~fvY 249 (392)
T KOG4693|consen 171 EMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPE-NTMKPGGRRSHSTFVY 249 (392)
T ss_pred ehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCC-CCcCCCcccccceEEE
Confidence 999999999999999999999999999996432 235678999999999998654 5566889999998777
Q ss_pred EEcCCcEEEEEeccCCC---CCceEEEEECCCCCCCCccc---cCCCchhhcchh-hhHHHhhccccc
Q 012184 266 IIEGEHHLVAFGGYNGK---YNNEVFVMRLKPRDIPRPKI---FQSPAAAAAAAS-VTAAYALAKSEK 326 (469)
Q Consensus 266 ~~~~~~~l~v~GG~~~~---~~~~~~~~d~~~~~w~~~~~---~~~~~~~~~~~~-~~~~~~~gg~~~ 326 (469)
++.||+|||+++. ..+|+|.||+.+..|..... -|.++.+.++++ ...+|.|||..-
T Consensus 250 ----ng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 250 ----NGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred ----cceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 7899999999875 67999999999999987654 367776665554 456888888765
No 7
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=8.1e-40 Score=317.43 Aligned_cols=287 Identities=20% Similarity=0.282 Sum_probs=223.6
Q ss_pred ccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCC-CCCcceEEEEECCCCeEEEeecCCCC
Q 012184 22 LRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK-SSDSMIVRFIDLETNLCGVMETSGKV 100 (469)
Q Consensus 22 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~-~~~~~~~~~~d~~t~~W~~~~~~g~~ 100 (469)
+....|..+.+.. +..|.+|.+|++++++++||++||.... ....+++++||+.+++|..+++.+..
T Consensus 4 ~~~~~W~~~~~~~------------~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~ 71 (341)
T PLN02153 4 TLQGGWIKVEQKG------------GKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDV 71 (341)
T ss_pred ccCCeEEEecCCC------------CCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCC
Confidence 4667899998753 2238899999999999999999998643 22457899999999999998865444
Q ss_pred CC-CCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCC--CCCCCCCCceEEEEcCcEEEEEecCCCC
Q 012184 101 PV-ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQ--TPPAPRYDHSAALHANRYLIVFGGCSHS 177 (469)
Q Consensus 101 p~-~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g--~~p~~r~~~~~~~~~~~~l~v~GG~~~~ 177 (469)
|. .+.+|++++++++||+|||..... ..+++++||+.+++|+.+++.. ..|.+|.+|+++++ +++||||||.+..
T Consensus 72 p~~~~~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~ 149 (341)
T PLN02153 72 PRISCLGVRMVAVGTKLYIFGGRDEKR-EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD-ENHVYVFGGVSKG 149 (341)
T ss_pred CCCccCceEEEEECCEEEEECCCCCCC-ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE-CCEEEEECCccCC
Confidence 44 345899999999999999987654 4789999999999999987431 23789999999887 6679999998643
Q ss_pred ------cccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCC--------CCcceEEEEECCCCcE
Q 012184 178 ------IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN--------NGCQETIVLNMTKLAW 243 (469)
Q Consensus 178 ------~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~--------~~~~d~~~~d~~~~~W 243 (469)
..++++++||+.+++|..+...+..|.+|.+|+++.++++|||+||.... ...+++++||+.+++|
T Consensus 150 ~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W 229 (341)
T PLN02153 150 GLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKW 229 (341)
T ss_pred CccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcE
Confidence 24578999999999999987655567899999999999999999996421 1257899999999999
Q ss_pred EEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccC----------CCCCceEEEEECCCCCCCCccc-----cCCCch
Q 012184 244 SILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN----------GKYNNEVFVMRLKPRDIPRPKI-----FQSPAA 308 (469)
Q Consensus 244 ~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~----------~~~~~~~~~~d~~~~~w~~~~~-----~~~~~~ 308 (469)
+.+... +..|.+|.+|+++++ +++||||||.. +...+++|.||+.++.|..+.. +|....
T Consensus 230 ~~~~~~-g~~P~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~ 304 (341)
T PLN02153 230 TEVETT-GAKPSARSVFAHAVV----GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWT 304 (341)
T ss_pred Eecccc-CCCCCCcceeeeEEE----CCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccc
Confidence 998643 345678888887776 78999999973 2245799999999999997753 333332
Q ss_pred hhcchh-h--hHHHhhcccccc
Q 012184 309 AAAAAS-V--TAAYALAKSEKL 327 (469)
Q Consensus 309 ~~~~~~-~--~~~~~~gg~~~~ 327 (469)
...++. . ..+|+|||....
T Consensus 305 ~~~~~~v~~~~~~~~~gG~~~~ 326 (341)
T PLN02153 305 AYTTATVYGKNGLLMHGGKLPT 326 (341)
T ss_pred cccccccCCcceEEEEcCcCCC
Confidence 222222 2 258889998654
No 8
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=7.3e-40 Score=334.37 Aligned_cols=254 Identities=12% Similarity=0.210 Sum_probs=219.1
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME 95 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~ 95 (469)
.++.|||.+++|..++++ |.+|.+|++++++++||++||........+++++||+.++.|..++
T Consensus 273 ~v~~yd~~~~~W~~l~~m----------------p~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~ 336 (557)
T PHA02713 273 CILVYNINTMEYSVISTI----------------PNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELP 336 (557)
T ss_pred CEEEEeCCCCeEEECCCC----------------CccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCC
Confidence 789999999999999988 7788899999999999999998644445688999999999999998
Q ss_pred cCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCC
Q 012184 96 TSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS 175 (469)
Q Consensus 96 ~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~ 175 (469)
++|.+|.++++++++++||++||.+... ..+++++||+.+++|+.++ ++|.+|.+++++++ +++||++||.+
T Consensus 337 ---~m~~~R~~~~~~~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~-~g~IYviGG~~ 408 (557)
T PHA02713 337 ---PMIKNRCRFSLAVIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLP---DMPIALSSYGMCVL-DQYIYIIGGRT 408 (557)
T ss_pred ---CCcchhhceeEEEECCEEEEECCcCCCC-CCceEEEEECCCCeEEECC---CCCcccccccEEEE-CCEEEEEeCCC
Confidence 8999999999999999999999986543 5788999999999999986 78999999999988 77899999975
Q ss_pred CC------------------cccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCc-ceEEEE
Q 012184 176 HS------------------IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGC-QETIVL 236 (469)
Q Consensus 176 ~~------------------~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~-~d~~~~ 236 (469)
.. ..++.+++|||.+++|+.+. +++.+|..++++.++++|||+||.++.... +.+++|
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~---~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Y 485 (557)
T PHA02713 409 EHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP---NFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRY 485 (557)
T ss_pred cccccccccccccccccccccccceEEEECCCCCeEeecC---CCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEe
Confidence 32 13578999999999999875 889999999999999999999998654333 457999
Q ss_pred ECCC-CcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCCCCccccCCC
Q 012184 237 NMTK-LAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSP 306 (469)
Q Consensus 237 d~~~-~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w~~~~~~~~~ 306 (469)
|+.+ ++|+.++++ |.+|.+++++++ +++||++||+++. ..+.+||+.+++|..+.+-++.
T Consensus 486 dp~~~~~W~~~~~m----~~~r~~~~~~~~----~~~iyv~Gg~~~~--~~~e~yd~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 486 NTNTYNGWELITTT----ESRLSALHTILH----DNTIMMLHCYESY--MLQDTFNVYTYEWNHICHQHSN 546 (557)
T ss_pred cCCCCCCeeEcccc----CcccccceeEEE----CCEEEEEeeecce--eehhhcCcccccccchhhhcCC
Confidence 9999 899999876 455677777777 8899999999873 4688999999999977665443
No 9
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=2.2e-37 Score=309.97 Aligned_cols=277 Identities=31% Similarity=0.523 Sum_probs=243.8
Q ss_pred CEEEcccCCCcccCC-ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcc
Q 012184 1 MLLRCSIRNYTLLEG-VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM 79 (469)
Q Consensus 1 l~~~GG~~~~~~~~~-~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~ 79 (469)
||||||...+...++ ++++||..+..|....+.+.. |.+|.+|+++.++++||+|||.+......+
T Consensus 73 ~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~-------------p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~ 139 (482)
T KOG0379|consen 73 LYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDE-------------PSPRYGHSLSAVGDKLYLFGGTDKKYRNLN 139 (482)
T ss_pred EEEECCCCCCCccccceeEEeecCCcccccccccCCC-------------CCcccceeEEEECCeEEEEccccCCCCChh
Confidence 699999888777772 399999999999999999766 899999999999999999999987555688
Q ss_pred eEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCce
Q 012184 80 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS 159 (469)
Q Consensus 80 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~ 159 (469)
+++.||+.|++|..+.+.+.+|++|.+|++++++++||||||.+......|++|+||+.+.+|.++.+.|..|.||++|+
T Consensus 140 ~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~ 219 (482)
T KOG0379|consen 140 ELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHA 219 (482)
T ss_pred heEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCce
Confidence 99999999999999999999999999999999999999999999877789999999999999999999999999999999
Q ss_pred EEEEcCcEEEEEecCC-CCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCC--CCcceEEEE
Q 012184 160 AALHANRYLIVFGGCS-HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN--NGCQETIVL 236 (469)
Q Consensus 160 ~~~~~~~~l~v~GG~~-~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~--~~~~d~~~~ 236 (469)
++++++ +++||||.. +..+++|+|+||+.+..|..+...+..|.+|+.|+++..+++++++||.... ..+.++|.|
T Consensus 220 ~~~~~~-~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l 298 (482)
T KOG0379|consen 220 MVVVGN-KLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGL 298 (482)
T ss_pred EEEECC-eEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccccccccccccc
Confidence 999955 577777766 7789999999999999999888889999999999999999999999998775 358899999
Q ss_pred ECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccC--CCCCceEEEEE
Q 012184 237 NMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN--GKYNNEVFVMR 291 (469)
Q Consensus 237 d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~--~~~~~~~~~~d 291 (469)
|+.+..|..+.......|.+|..|..+.+...+...+.++||.. ....++++.+.
T Consensus 299 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (482)
T KOG0379|consen 299 DLETLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVFSLQ 355 (482)
T ss_pred cccccceeeeeccccccccccccccceeeccCCccceeeecCccccccchhhccccc
Confidence 99999999998766567889999998888777667777777743 33344555443
No 10
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=3e-37 Score=309.00 Aligned_cols=263 Identities=31% Similarity=0.527 Sum_probs=232.7
Q ss_pred CCCCCCcCeeeEEECCEEEEEccccCCCCCcc-eEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCC
Q 012184 48 EVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM-IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSR 126 (469)
Q Consensus 48 ~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~-~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~ 126 (469)
..|.+|++|+++.+++++|+|||........+ ++|+||..+..|.....+|..|.+|.+|.+++++++||+|||.+...
T Consensus 56 ~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~ 135 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKY 135 (482)
T ss_pred CCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCC
Confidence 34899999999999999999999877665444 69999999999999999999999999999999999999999998755
Q ss_pred CccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCc-ccCcEEEEECCCCceEeeeecCCCCCC
Q 012184 127 KLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI-FFNDLHVLDLQTNEWSQPEIKGDLVTG 205 (469)
Q Consensus 127 ~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~-~~~~i~~~d~~~~~W~~~~~~~~~p~~ 205 (469)
...++++.||+.|++|..+.+.+.+|++|.+|++++++ +++|||||.+... ..|++|+||+.+.+|.++.+.+..|.|
T Consensus 136 ~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g-~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~p 214 (482)
T KOG0379|consen 136 RNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVG-TKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSP 214 (482)
T ss_pred CChhheEeccCCCCcEEEecCcCCCCCCcccceEEEEC-CEEEEECCccCcccceeeeeeeccccccceecccCCCCCCC
Confidence 56899999999999999999999999999999999995 7899999998765 899999999999999999999999999
Q ss_pred CcceEEEEECCEEEEEecCC-CCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC--
Q 012184 206 RAGHAGITIDENWYIVGGGD-NNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-- 282 (469)
Q Consensus 206 r~~~~~~~~~~~l~v~GG~~-~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~-- 282 (469)
|.+|+++.++++++||||.+ +...++|+|.||+.+..|..+ ...+..|.+|.+|+++.. +..++++||....
T Consensus 215 R~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~-~~~g~~p~~R~~h~~~~~----~~~~~l~gG~~~~~~ 289 (482)
T KOG0379|consen 215 RYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLL-PTGGDLPSPRSGHSLTVS----GDHLLLFGGGTDPKQ 289 (482)
T ss_pred CCCceEEEECCeEEEEeccccCCceecceEeeecccceeeec-cccCCCCCCcceeeeEEE----CCEEEEEcCCccccc
Confidence 99999999999999999988 666799999999999999954 446778899999998866 7899999998763
Q ss_pred -CCceEEEEECCCCCCCCcccc----CCCchhhcchhhh
Q 012184 283 -YNNEVFVMRLKPRDIPRPKIF----QSPAAAAAAASVT 316 (469)
Q Consensus 283 -~~~~~~~~d~~~~~w~~~~~~----~~~~~~~~~~~~~ 316 (469)
...++|.|+..+..|..+... |.++..+.++...
T Consensus 290 ~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 328 (482)
T KOG0379|consen 290 EPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELID 328 (482)
T ss_pred ccccccccccccccceeeeeccccccccccccccceeec
Confidence 688999999999999876644 4555555544443
No 11
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=2.4e-36 Score=311.12 Aligned_cols=254 Identities=20% Similarity=0.233 Sum_probs=214.4
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME 95 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~ 95 (469)
.+..|++.+.+|..+++. | .+..|+++++++.||++||........++++.||+.+++|..++
T Consensus 265 ~~~~~~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 327 (534)
T PHA03098 265 NYITNYSPLSEINTIIDI----------------H-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVP 327 (534)
T ss_pred eeeecchhhhhcccccCc----------------c-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECC
Confidence 566788889999887654 2 34567899999999999998766656678999999999999988
Q ss_pred cCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCC
Q 012184 96 TSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS 175 (469)
Q Consensus 96 ~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~ 175 (469)
++|.+|.+|++++++++||++||.+.. ...+++++||+.+++|+.++ ++|.||++|+++.+ +++||++||..
T Consensus 328 ---~~~~~R~~~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~-~~~iYv~GG~~ 399 (534)
T PHA03098 328 ---ELIYPRKNPGVTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEP---PLIFPRYNPCVVNV-NNLIYVIGGIS 399 (534)
T ss_pred ---CCCcccccceEEEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCC---CcCcCCccceEEEE-CCEEEEECCcC
Confidence 788999999999999999999998743 35889999999999999876 78899999999888 67899999964
Q ss_pred C-CcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCC---cceEEEEECCCCcEEEeccCCC
Q 012184 176 H-SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNG---CQETIVLNMTKLAWSILTSVKG 251 (469)
Q Consensus 176 ~-~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~---~~d~~~~d~~~~~W~~~~~~~~ 251 (469)
. ...++++++||+.+++|..+. ++|.+|.+|+++.++++|||+||.+.... .+++++||+.+++|+.++.+
T Consensus 400 ~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~-- 474 (534)
T PHA03098 400 KNDELLKTVECFSLNTNKWSKGS---PLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSL-- 474 (534)
T ss_pred CCCcccceEEEEeCCCCeeeecC---CCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCC--
Confidence 3 345789999999999999875 78899999999999999999999764432 56799999999999998765
Q ss_pred CCCCCCCCcceEEEEEcCCcEEEEEeccCCC-CCceEEEEECCCCCCCCccccCC
Q 012184 252 RNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPKIFQS 305 (469)
Q Consensus 252 ~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~d~~~~~w~~~~~~~~ 305 (469)
|.+|.+++++.. ++.|||+||.++. ..+++++||+.++.|.....+|.
T Consensus 475 --~~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 475 --NFPRINASLCIF----NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred --CcccccceEEEE----CCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence 345777877666 7899999998754 37889999999999987766543
No 12
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.7e-36 Score=305.68 Aligned_cols=220 Identities=25% Similarity=0.348 Sum_probs=204.7
Q ss_pred CEEEcccC-CCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcc
Q 012184 1 MLLRCSIR-NYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM 79 (469)
Q Consensus 1 l~~~GG~~-~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~ 79 (469)
||++||.+ ....++ ++++|||.+++|+.++++ +.+|.+|+++++++.||++||.++.. ..+
T Consensus 335 lYv~GG~~~~~~~l~-~ve~YD~~~~~W~~~a~M----------------~~~R~~~~v~~l~g~iYavGG~dg~~-~l~ 396 (571)
T KOG4441|consen 335 LYVVGGYDSGSDRLS-SVERYDPRTNQWTPVAPM----------------NTKRSDFGVAVLDGKLYAVGGFDGEK-SLN 396 (571)
T ss_pred EEEEccccCCCcccc-eEEEecCCCCceeccCCc----------------cCccccceeEEECCEEEEEecccccc-ccc
Confidence 69999998 567778 999999999999999998 78999999999999999999998544 677
Q ss_pred eEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCce
Q 012184 80 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS 159 (469)
Q Consensus 80 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~ 159 (469)
++++||+.+++|..++ +|+.+|.+|++++++++||++||.+....+++++.+|||.+++|+.++ +|+.+|.+++
T Consensus 397 svE~YDp~~~~W~~va---~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~---~M~~~R~~~g 470 (571)
T KOG4441|consen 397 SVECYDPVTNKWTPVA---PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA---PMNTRRSGFG 470 (571)
T ss_pred cEEEecCCCCcccccC---CCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecC---Ccccccccce
Confidence 8999999999999999 889999999999999999999999887767999999999999999998 8889999999
Q ss_pred EEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECC
Q 012184 160 AALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMT 239 (469)
Q Consensus 160 ~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~ 239 (469)
++++ +++||++||.+.......+++|||.+++|+.+. +++.+|..+.++.+++.+|++||+++...++.+..||+.
T Consensus 471 ~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~---~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~ 546 (571)
T KOG4441|consen 471 VAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVA---PMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPE 546 (571)
T ss_pred EEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcc---cCccccccccEEEECCEEEEEecccCccccceeEEcCCC
Confidence 9998 778999999988767788999999999999984 889999999999999999999999999999999999999
Q ss_pred CCcEEEecc
Q 012184 240 KLAWSILTS 248 (469)
Q Consensus 240 ~~~W~~~~~ 248 (469)
+++|+.+..
T Consensus 547 ~d~W~~~~~ 555 (571)
T KOG4441|consen 547 TDTWTEVTE 555 (571)
T ss_pred CCceeeCCC
Confidence 999999876
No 13
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=3.3e-35 Score=283.12 Aligned_cols=269 Identities=17% Similarity=0.220 Sum_probs=209.0
Q ss_pred CCCcCeeeEEECCEEEEEccccCCC---------CCcceEEEEECCC--CeEEEeecCCCCCCCCcceEEEEECCEEEEE
Q 012184 51 PPMSDHCMVKWGTKLLILGGHYKKS---------SDSMIVRFIDLET--NLCGVMETSGKVPVARGGHSVTLVGSRLIIF 119 (469)
Q Consensus 51 ~~r~~~~~~~~~~~iy~~GG~~~~~---------~~~~~~~~~d~~t--~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~ 119 (469)
+.++++.++++++.||++||..... ...+++++|+..+ ..|..++ ++|.+|..+++++++++||++
T Consensus 2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~---~lp~~r~~~~~~~~~~~lyvi 78 (323)
T TIGR03548 2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDG---QLPYEAAYGASVSVENGIYYI 78 (323)
T ss_pred CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcc---cCCccccceEEEEECCEEEEE
Confidence 5788999999999999999986542 1446789886332 3798887 789999988999999999999
Q ss_pred eccCCCCCccCcEEEEECCCCeEE-EeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeee
Q 012184 120 GGEDRSRKLLNDVHFLDLETMTWD-AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI 198 (469)
Q Consensus 120 GG~~~~~~~~~~v~~~d~~t~~W~-~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~ 198 (469)
||.+... .++++++||+.+++|. .....+++|.+|..|+++++ +++||++||.......+++++||+.+++|+.+.
T Consensus 79 GG~~~~~-~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~- 155 (323)
T TIGR03548 79 GGSNSSE-RFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELP- 155 (323)
T ss_pred cCCCCCC-CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCCeeECC-
Confidence 9987644 4789999999999983 22334588999999999988 678999999865566899999999999999975
Q ss_pred cCCCC-CCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCC-CCCCCCCCcceEEEEEcCCcEEEEE
Q 012184 199 KGDLV-TGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKG-RNPLASEGLSVCSAIIEGEHHLVAF 276 (469)
Q Consensus 199 ~~~~p-~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~-~~p~~r~~~s~~~~~~~~~~~l~v~ 276 (469)
++| .+|..|+++.++++|||+||.+.. ...++++||+.+++|+.++.++. ..|..+.+++ .+++. +++|||+
T Consensus 156 --~~p~~~r~~~~~~~~~~~iYv~GG~~~~-~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~--~~~~~-~~~iyv~ 229 (323)
T TIGR03548 156 --DFPGEPRVQPVCVKLQNELYVFGGGSNI-AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAA--SIKIN-ESLLLCI 229 (323)
T ss_pred --CCCCCCCCcceEEEECCEEEEEcCCCCc-cccceEEEecCCCeeEECCCCCCCCCceecccee--EEEEC-CCEEEEE
Confidence 455 479999999999999999997643 35678999999999999987642 2333333333 23332 5799999
Q ss_pred eccCCC---------------------------------CCceEEEEECCCCCCCCccccC-CCchhh-cchhhhHHHhh
Q 012184 277 GGYNGK---------------------------------YNNEVFVMRLKPRDIPRPKIFQ-SPAAAA-AAASVTAAYAL 321 (469)
Q Consensus 277 GG~~~~---------------------------------~~~~~~~~d~~~~~w~~~~~~~-~~~~~~-~~~~~~~~~~~ 321 (469)
||.++. ..+++++||+.+++|...+.+| .++..+ +......+|++
T Consensus 230 GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~ 309 (323)
T TIGR03548 230 GGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSI 309 (323)
T ss_pred CCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEE
Confidence 998642 1367999999999999888776 344333 55566679999
Q ss_pred cccccccCcc
Q 012184 322 AKSEKLDIPK 331 (469)
Q Consensus 322 gg~~~~~~~~ 331 (469)
||..++..++
T Consensus 310 GG~~~pg~rt 319 (323)
T TIGR03548 310 NGELKPGVRT 319 (323)
T ss_pred eccccCCcCC
Confidence 9988766543
No 14
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1.8e-34 Score=281.06 Aligned_cols=264 Identities=16% Similarity=0.178 Sum_probs=203.2
Q ss_pred CCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEEC--CCCeEEEeecCCCCC-CCCcceEEEEECCEEEEEeccC
Q 012184 47 LEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDL--ETNLCGVMETSGKVP-VARGGHSVTLVGSRLIIFGGED 123 (469)
Q Consensus 47 ~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~--~t~~W~~~~~~g~~p-~~r~~~~~~~~~~~lyi~GG~~ 123 (469)
+++|.+|..+++++++++||++||... +++++||+ .+++|..++ ++| .+|.++++++++++||++||..
T Consensus 2 ~~lp~~~~~~~~~~~~~~vyv~GG~~~-----~~~~~~d~~~~~~~W~~l~---~~p~~~R~~~~~~~~~~~iYv~GG~~ 73 (346)
T TIGR03547 2 PDLPVGFKNGTGAIIGDKVYVGLGSAG-----TSWYKLDLKKPSKGWQKIA---DFPGGPRNQAVAAAIDGKLYVFGGIG 73 (346)
T ss_pred CCCCccccCceEEEECCEEEEEccccC-----CeeEEEECCCCCCCceECC---CCCCCCcccceEEEECCEEEEEeCCC
Confidence 556889999999899999999999742 46899996 578899998 788 5899999999999999999986
Q ss_pred CCC-----CccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCc--------------------
Q 012184 124 RSR-----KLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI-------------------- 178 (469)
Q Consensus 124 ~~~-----~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~-------------------- 178 (469)
... ..++++++||+.+++|+.++. .+|.+|.+|+++...+++||++||.+...
T Consensus 74 ~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (346)
T TIGR03547 74 KANSEGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDK 151 (346)
T ss_pred CCCCCCcceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhh
Confidence 422 247899999999999999862 45677777877733488899999975321
Q ss_pred --------------ccCcEEEEECCCCceEeeeecCCCCC-CCcceEEEEECCEEEEEecCCCCCC-cceEEEEEC--CC
Q 012184 179 --------------FFNDLHVLDLQTNEWSQPEIKGDLVT-GRAGHAGITIDENWYIVGGGDNNNG-CQETIVLNM--TK 240 (469)
Q Consensus 179 --------------~~~~i~~~d~~~~~W~~~~~~~~~p~-~r~~~~~~~~~~~l~v~GG~~~~~~-~~d~~~~d~--~~ 240 (469)
.++++++||+.+++|+.+. ++|. +|+.|+++.++++|||+||...... ..+++.||+ .+
T Consensus 152 ~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~ 228 (346)
T TIGR03547 152 LIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGK 228 (346)
T ss_pred hHHHHhCCChhHcCccceEEEEECCCCceeECc---cCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCC
Confidence 2478999999999999975 6675 6889999999999999999754332 345666654 67
Q ss_pred CcEEEeccCCCCC---CCCCCCcceEEEEEcCCcEEEEEeccCCC------------------CCceEEEEECCCCCCCC
Q 012184 241 LAWSILTSVKGRN---PLASEGLSVCSAIIEGEHHLVAFGGYNGK------------------YNNEVFVMRLKPRDIPR 299 (469)
Q Consensus 241 ~~W~~~~~~~~~~---p~~r~~~s~~~~~~~~~~~l~v~GG~~~~------------------~~~~~~~~d~~~~~w~~ 299 (469)
+.|+.++.++.++ +..+.+|+++++ +++|||+||.+.. ....+.+||+++++|..
T Consensus 229 ~~W~~~~~m~~~r~~~~~~~~~~~a~~~----~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~ 304 (346)
T TIGR03547 229 LEWNKLPPLPPPKSSSQEGLAGAFAGIS----NGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSK 304 (346)
T ss_pred ceeeecCCCCCCCCCccccccEEeeeEE----CCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccc
Confidence 7999998876433 122234433444 6799999997521 11357899999999999
Q ss_pred ccccCCCchhhcch-hhhHHHhhcccccc
Q 012184 300 PKIFQSPAAAAAAA-SVTAAYALAKSEKL 327 (469)
Q Consensus 300 ~~~~~~~~~~~~~~-~~~~~~~~gg~~~~ 327 (469)
+..+|.++..+.++ ....+|++||....
T Consensus 305 ~~~lp~~~~~~~~~~~~~~iyv~GG~~~~ 333 (346)
T TIGR03547 305 VGKLPQGLAYGVSVSWNNGVLLIGGENSG 333 (346)
T ss_pred cCCCCCCceeeEEEEcCCEEEEEeccCCC
Confidence 99999887766553 56779999997643
No 15
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=3.3e-34 Score=276.16 Aligned_cols=250 Identities=17% Similarity=0.203 Sum_probs=192.0
Q ss_pred CEEEcccCCC----------cccCCceEEEE-cc-CCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEE
Q 012184 1 MLLRCSIRNY----------TLLEGVVMVFD-LR-SLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLIL 68 (469)
Q Consensus 1 l~~~GG~~~~----------~~~~~~~~~~d-~~-~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~ 68 (469)
|||+||.... ...+ ++++|+ +. +.+|..++++ |.+|..++++++++.||++
T Consensus 16 l~v~GG~~~~~~~~~~~g~~~~~~-~v~~~~~~~~~~~W~~~~~l----------------p~~r~~~~~~~~~~~lyvi 78 (323)
T TIGR03548 16 ILVAGGCNFPEDPLAEGGKKKNYK-GIYIAKDENSNLKWVKDGQL----------------PYEAAYGASVSVENGIYYI 78 (323)
T ss_pred EEEeeccCCCCCchhhCCcEEeee-eeEEEecCCCceeEEEcccC----------------CccccceEEEEECCEEEEE
Confidence 6899996422 3445 788886 33 2379988877 7788888889999999999
Q ss_pred ccccCCCCCcceEEEEECCCCeEE-EeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeee
Q 012184 69 GGHYKKSSDSMIVRFIDLETNLCG-VMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEV 147 (469)
Q Consensus 69 GG~~~~~~~~~~~~~~d~~t~~W~-~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~ 147 (469)
||..... ..+++++||+.+++|. ......++|.+|..|++++++++||++||..... ..+++++||+.+++|+.++
T Consensus 79 GG~~~~~-~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~-~~~~v~~yd~~~~~W~~~~- 155 (323)
T TIGR03548 79 GGSNSSE-RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGK-PSNKSYLFNLETQEWFELP- 155 (323)
T ss_pred cCCCCCC-CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCc-cCceEEEEcCCCCCeeECC-
Confidence 9987544 5678999999999983 2222237899999999999999999999985433 4789999999999999986
Q ss_pred CCCCC-CCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecC--CCCCCCcceEE-EEECCEEEEEec
Q 012184 148 TQTPP-APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKG--DLVTGRAGHAG-ITIDENWYIVGG 223 (469)
Q Consensus 148 ~g~~p-~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~--~~p~~r~~~~~-~~~~~~l~v~GG 223 (469)
++| .+|..|+++++ +++||||||.+.. ..+++++||+.+++|+.+.... ..|.++..+++ +..+++|||+||
T Consensus 156 --~~p~~~r~~~~~~~~-~~~iYv~GG~~~~-~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG 231 (323)
T TIGR03548 156 --DFPGEPRVQPVCVKL-QNELYVFGGGSNI-AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGG 231 (323)
T ss_pred --CCCCCCCCcceEEEE-CCEEEEEcCCCCc-cccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECC
Confidence 455 47888888777 6789999998643 3467899999999999876321 23444445544 444789999999
Q ss_pred CCCCC--------------------------------CcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCc
Q 012184 224 GDNNN--------------------------------GCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEH 271 (469)
Q Consensus 224 ~~~~~--------------------------------~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~ 271 (469)
.+... ..+++++||+.+++|+.++.++ ..+|.+++++.+ ++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p---~~~r~~~~~~~~----~~ 304 (323)
T TIGR03548 232 FNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSP---FFARCGAALLLT----GN 304 (323)
T ss_pred cCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccc---ccccCchheEEE----CC
Confidence 76321 1357999999999999987553 246788888777 88
Q ss_pred EEEEEeccCC
Q 012184 272 HLVAFGGYNG 281 (469)
Q Consensus 272 ~l~v~GG~~~ 281 (469)
.||++||...
T Consensus 305 ~iyv~GG~~~ 314 (323)
T TIGR03548 305 NIFSINGELK 314 (323)
T ss_pred EEEEEecccc
Confidence 9999999743
No 16
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=6.7e-35 Score=297.93 Aligned_cols=217 Identities=11% Similarity=0.147 Sum_probs=188.7
Q ss_pred CEEEcccC-CCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcc
Q 012184 1 MLLRCSIR-NYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM 79 (469)
Q Consensus 1 l~~~GG~~-~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~ 79 (469)
||++||.. ....++ .++.|||.+++|..++++ |.+|.+|++++++++||++||..+.. ..+
T Consensus 306 IYviGG~~~~~~~~~-~v~~Yd~~~n~W~~~~~m----------------~~~R~~~~~~~~~g~IYviGG~~~~~-~~~ 367 (557)
T PHA02713 306 IIIAGGYNFNNPSLN-KVYKINIENKIHVELPPM----------------IKNRCRFSLAVIDDTIYAIGGQNGTN-VER 367 (557)
T ss_pred EEEEcCCCCCCCccc-eEEEEECCCCeEeeCCCC----------------cchhhceeEEEECCEEEEECCcCCCC-CCc
Confidence 69999975 344567 999999999999999888 78999999999999999999986443 567
Q ss_pred eEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCC-----------------CccCcEEEEECCCCeE
Q 012184 80 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSR-----------------KLLNDVHFLDLETMTW 142 (469)
Q Consensus 80 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~-----------------~~~~~v~~~d~~t~~W 142 (469)
++++|||.+++|..++ ++|.+|.++++++++++||++||.+... ..++.+++|||.+++|
T Consensus 368 sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W 444 (557)
T PHA02713 368 TIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW 444 (557)
T ss_pred eEEEEECCCCeEEECC---CCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE
Confidence 8999999999999998 8999999999999999999999986421 1267899999999999
Q ss_pred EEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCc-ccCcEEEEECCC-CceEeeeecCCCCCCCcceEEEEECCEEEE
Q 012184 143 DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI-FFNDLHVLDLQT-NEWSQPEIKGDLVTGRAGHAGITIDENWYI 220 (469)
Q Consensus 143 ~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~-~~~~i~~~d~~~-~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v 220 (469)
+.++ +++.+|..++++++ +++||++||.+... ..+.+++|||.+ ++|+.+. ++|.+|..+.++.++++||+
T Consensus 445 ~~v~---~m~~~r~~~~~~~~-~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~---~m~~~r~~~~~~~~~~~iyv 517 (557)
T PHA02713 445 ETLP---NFWTGTIRPGVVSH-KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT---TTESRLSALHTILHDNTIMM 517 (557)
T ss_pred eecC---CCCcccccCcEEEE-CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc---ccCcccccceeEEECCEEEE
Confidence 9886 78899999999988 66899999986433 335689999999 8999875 89999999999999999999
Q ss_pred EecCCCCCCcceEEEEECCCCcEEEecc
Q 012184 221 VGGGDNNNGCQETIVLNMTKLAWSILTS 248 (469)
Q Consensus 221 ~GG~~~~~~~~d~~~~d~~~~~W~~~~~ 248 (469)
+||.++. ..+..||+.+++|+.+.+
T Consensus 518 ~Gg~~~~---~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 518 LHCYESY---MLQDTFNVYTYEWNHICH 542 (557)
T ss_pred Eeeecce---eehhhcCcccccccchhh
Confidence 9998763 468899999999998864
No 17
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=5.1e-34 Score=277.86 Aligned_cols=253 Identities=17% Similarity=0.177 Sum_probs=193.6
Q ss_pred CEEEcccCCCcccCCceEEEEc--cCCceeeeeecccccCCccccCCCCCCC-CCCcCeeeEEECCEEEEEccccCCC--
Q 012184 1 MLLRCSIRNYTLLEGVVMVFDL--RSLAWSNLRLETELDADKTEDSGLLEVL-PPMSDHCMVKWGTKLLILGGHYKKS-- 75 (469)
Q Consensus 1 l~~~GG~~~~~~~~~~~~~~d~--~~~~W~~~~~~~~~~~~~~~~~~~~~~p-~~r~~~~~~~~~~~iy~~GG~~~~~-- 75 (469)
|||+||... + .+++||+ .+++|..++++ | .+|..|++++++++||++||+....
T Consensus 20 vyv~GG~~~----~-~~~~~d~~~~~~~W~~l~~~----------------p~~~R~~~~~~~~~~~iYv~GG~~~~~~~ 78 (346)
T TIGR03547 20 VYVGLGSAG----T-SWYKLDLKKPSKGWQKIADF----------------PGGPRNQAVAAAIDGKLYVFGGIGKANSE 78 (346)
T ss_pred EEEEccccC----C-eeEEEECCCCCCCceECCCC----------------CCCCcccceEEEECCEEEEEeCCCCCCCC
Confidence 699999632 4 8899996 67899999987 5 4899999999999999999986432
Q ss_pred ---CCcceEEEEECCCCeEEEeecCCCCCCCCcceEEE-EECCEEEEEeccCCCC-------------------------
Q 012184 76 ---SDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVT-LVGSRLIIFGGEDRSR------------------------- 126 (469)
Q Consensus 76 ---~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~-~~~~~lyi~GG~~~~~------------------------- 126 (469)
...+++++||+.+++|+.++. ++|.+|.+++++ +++++||++||.+...
T Consensus 79 ~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T TIGR03547 79 GSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAY 156 (346)
T ss_pred CcceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHH
Confidence 145789999999999999972 467788888776 6899999999986320
Q ss_pred --------CccCcEEEEECCCCeEEEeeeCCCCCC-CCCCceEEEEcCcEEEEEecCCCCc-ccCcEEEEEC--CCCceE
Q 012184 127 --------KLLNDVHFLDLETMTWDAVEVTQTPPA-PRYDHSAALHANRYLIVFGGCSHSI-FFNDLHVLDL--QTNEWS 194 (469)
Q Consensus 127 --------~~~~~v~~~d~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~~l~v~GG~~~~~-~~~~i~~~d~--~~~~W~ 194 (469)
...+++++||+.+++|+.+. ++|. +|.+++++.+ +++||||||..... ...+++.|++ .+++|.
T Consensus 157 ~~~~~~~~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~ 232 (346)
T TIGR03547 157 FSQPPEDYFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHK-GNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWN 232 (346)
T ss_pred hCCChhHcCccceEEEEECCCCceeECc---cCCCCcCCCceEEEE-CCEEEEEeeeeCCCccchheEEEEecCCCceee
Confidence 12478999999999999986 6664 6888888887 67899999975432 3356666664 677999
Q ss_pred eeeecCCCCCCC-------cceEEEEECCEEEEEecCCCCC-----------------CcceEEEEECCCCcEEEeccCC
Q 012184 195 QPEIKGDLVTGR-------AGHAGITIDENWYIVGGGDNNN-----------------GCQETIVLNMTKLAWSILTSVK 250 (469)
Q Consensus 195 ~~~~~~~~p~~r-------~~~~~~~~~~~l~v~GG~~~~~-----------------~~~d~~~~d~~~~~W~~~~~~~ 250 (469)
.+. ++|.+| ..|+++.++++|||+||.+... ....+.+||+.+++|+.++++|
T Consensus 233 ~~~---~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp 309 (346)
T TIGR03547 233 KLP---PLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLP 309 (346)
T ss_pred ecC---CCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCC
Confidence 875 555544 4666788999999999975211 1235789999999999988764
Q ss_pred CCCCCCCCCcceEEEEEcCCcEEEEEeccCC--CCCceEEEEE
Q 012184 251 GRNPLASEGLSVCSAIIEGEHHLVAFGGYNG--KYNNEVFVMR 291 (469)
Q Consensus 251 ~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~--~~~~~~~~~d 291 (469)
.+|..++++++ ++.|||+||.+. ...++++.|.
T Consensus 310 ----~~~~~~~~~~~----~~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 310 ----QGLAYGVSVSW----NNGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred ----CCceeeEEEEc----CCEEEEEeccCCCCCEeeeEEEEE
Confidence 44556554444 789999999864 4577787664
No 18
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=2.5e-34 Score=296.07 Aligned_cols=223 Identities=18% Similarity=0.309 Sum_probs=193.9
Q ss_pred CEEEcccCCC-cccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcc
Q 012184 1 MLLRCSIRNY-TLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM 79 (469)
Q Consensus 1 l~~~GG~~~~-~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~ 79 (469)
||++||.... ...+ +++.||+.+++|..++++ |.+|.+|++++++++||++||.... ...+
T Consensus 297 lyv~GG~~~~~~~~~-~v~~yd~~~~~W~~~~~~----------------~~~R~~~~~~~~~~~lyv~GG~~~~-~~~~ 358 (534)
T PHA03098 297 IYFIGGMNKNNLSVN-SVVSYDTKTKSWNKVPEL----------------IYPRKNPGVTVFNNRIYVIGGIYNS-ISLN 358 (534)
T ss_pred EEEECCCcCCCCeec-cEEEEeCCCCeeeECCCC----------------CcccccceEEEECCEEEEEeCCCCC-Eecc
Confidence 6999997643 4556 899999999999988877 7789999999999999999998743 3567
Q ss_pred eEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCce
Q 012184 80 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS 159 (469)
Q Consensus 80 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~ 159 (469)
++++||+.+++|+.++ ++|.+|.+|++++++++||++||.......++++++||+.+++|+.+. ++|.+|.+|+
T Consensus 359 ~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~ 432 (534)
T PHA03098 359 TVESWKPGESKWREEP---PLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS---PLPISHYGGC 432 (534)
T ss_pred eEEEEcCCCCceeeCC---CcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC---CCCccccCce
Confidence 8999999999999988 889999999999999999999998655556899999999999999886 6788999999
Q ss_pred EEEEcCcEEEEEecCCCCc---ccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEE
Q 012184 160 AALHANRYLIVFGGCSHSI---FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL 236 (469)
Q Consensus 160 ~~~~~~~~l~v~GG~~~~~---~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~ 236 (469)
++.+ +++||++||.+... ..+.+++||+.+++|+.+. ++|.+|..++++.++++|||+||.+.....+++++|
T Consensus 433 ~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~y 508 (534)
T PHA03098 433 AIYH-DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS---SLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVY 508 (534)
T ss_pred EEEE-CCEEEEECCccCCCCCcccceEEEecCCCCceeeCC---CCCcccccceEEEECCEEEEEcCCcCCcccceeEEE
Confidence 8888 67899999975432 3567999999999999975 678889999999999999999998776667899999
Q ss_pred ECCCCcEEEeccCCC
Q 012184 237 NMTKLAWSILTSVKG 251 (469)
Q Consensus 237 d~~~~~W~~~~~~~~ 251 (469)
|+.+++|+.++.+|.
T Consensus 509 d~~~~~W~~~~~~p~ 523 (534)
T PHA03098 509 DDKTNTWTLFCKFPK 523 (534)
T ss_pred eCCCCEEEecCCCcc
Confidence 999999999876543
No 19
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=4.7e-34 Score=261.15 Aligned_cols=247 Identities=25% Similarity=0.424 Sum_probs=206.6
Q ss_pred CCCCCCcCeeeEEE--CCEEEEEccccCCCC---CcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEEC-CEEEEEec
Q 012184 48 EVLPPMSDHCMVKW--GTKLLILGGHYKKSS---DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGG 121 (469)
Q Consensus 48 ~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~---~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyi~GG 121 (469)
++|.+|...++++. .+.|++|||.--.+. ..|++|+||+.++.|+++.+. ..|++|++|.++++. |.||+|||
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~sp-n~P~pRsshq~va~~s~~l~~fGG 140 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSP-NAPPPRSSHQAVAVPSNILWLFGG 140 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccC-CCcCCCccceeEEeccCeEEEecc
Confidence 45889999888876 568999999543332 679999999999999999865 579999999999997 89999999
Q ss_pred cCCCCC-----ccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCC----CcccCcEEEEECCCCc
Q 012184 122 EDRSRK-----LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH----SIFFNDLHVLDLQTNE 192 (469)
Q Consensus 122 ~~~~~~-----~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~----~~~~~~i~~~d~~~~~ 192 (469)
.-.+.. ...++|.||+.+++|+.+...| .|.||++|.|++. .++|+||||.-. ..++||+|+||+++-+
T Consensus 141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvaw-K~~lilFGGFhd~nr~y~YyNDvy~FdLdtyk 218 (521)
T KOG1230|consen 141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAW-KRQLILFGGFHDSNRDYIYYNDVYAFDLDTYK 218 (521)
T ss_pred ccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEe-eeeEEEEcceecCCCceEEeeeeEEEecccee
Confidence 743211 3568999999999999998765 7999999999999 778999999733 2678999999999999
Q ss_pred eEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCC---------CCCcceEEEEECCC-----CcEEEeccCCCCCCCCC
Q 012184 193 WSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDN---------NNGCQETIVLNMTK-----LAWSILTSVKGRNPLAS 257 (469)
Q Consensus 193 W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~---------~~~~~d~~~~d~~~-----~~W~~~~~~~~~~p~~r 257 (469)
|.++.+.+..|.||++|.+... .+.|||.||+.. ....+|+|.+++.+ -.|+.+.+ .+..|.+|
T Consensus 219 W~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp-~g~kPspR 297 (521)
T KOG1230|consen 219 WSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKP-SGVKPSPR 297 (521)
T ss_pred eeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccC-CCCCCCCC
Confidence 9999988888999999998887 899999999842 22368999999988 67898865 46668999
Q ss_pred CCcceEEEEEcCCcEEEEEeccCC----------CCCceEEEEECCCCCCCCcc
Q 012184 258 EGLSVCSAIIEGEHHLVAFGGYNG----------KYNNEVFVMRLKPRDIPRPK 301 (469)
Q Consensus 258 ~~~s~~~~~~~~~~~l~v~GG~~~----------~~~~~~~~~d~~~~~w~~~~ 301 (469)
.|++++++. +++-|.|||... .+.||+|.||+..+.|+...
T Consensus 298 sgfsv~va~---n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~q 348 (521)
T KOG1230|consen 298 SGFSVAVAK---NHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQ 348 (521)
T ss_pred CceeEEEec---CCceEEecceecccccchhhhhhhhhhhhheecccchhhHhh
Confidence 999887763 568999999742 36899999999999998653
No 20
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.9e-34 Score=269.68 Aligned_cols=273 Identities=24% Similarity=0.408 Sum_probs=230.6
Q ss_pred CEEEcccCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcce
Q 012184 1 MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI 80 (469)
Q Consensus 1 l~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~ 80 (469)
|.||||...| ..+ .+.+|+..++.|.....-++. |++++.|.++..|.+||+|||..+.+.++|+
T Consensus 45 iviFGGGNEG-iiD-ELHvYNTatnqWf~PavrGDi-------------PpgcAA~GfvcdGtrilvFGGMvEYGkYsNd 109 (830)
T KOG4152|consen 45 IVIFGGGNEG-IID-ELHVYNTATNQWFAPAVRGDI-------------PPGCAAFGFVCDGTRILVFGGMVEYGKYSND 109 (830)
T ss_pred EEEecCCccc-chh-hhhhhccccceeecchhcCCC-------------CCchhhcceEecCceEEEEccEeeeccccch
Confidence 5789986544 466 899999999999998888776 9999999999999999999999999989999
Q ss_pred EEEEECCCCeEEEee----cCCCCCCCCcceEEEEECCEEEEEeccCCC--------CCccCcEEEEECCCC----eEEE
Q 012184 81 VRFIDLETNLCGVME----TSGKVPVARGGHSVTLVGSRLIIFGGEDRS--------RKLLNDVHFLDLETM----TWDA 144 (469)
Q Consensus 81 ~~~~d~~t~~W~~~~----~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~--------~~~~~~v~~~d~~t~----~W~~ 144 (469)
+|.+....=.|+++. ..|++|.+|.+|+...++++.|+|||..+. ..|+|++|++++.-+ -|..
T Consensus 110 LYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~i 189 (830)
T KOG4152|consen 110 LYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDI 189 (830)
T ss_pred HHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEec
Confidence 888766666677775 457889999999999999999999998432 248999999998744 5999
Q ss_pred eeeCCCCCCCCCCceEEEEc-----CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEE
Q 012184 145 VEVTQTPPAPRYDHSAALHA-----NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWY 219 (469)
Q Consensus 145 ~~~~g~~p~~r~~~~~~~~~-----~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~ 219 (469)
+.+.|..|.||-.|+++++. ..++|||||+.+ .++.|+|.+|++|.+|.+++..|-.|.||+.|+++.|+|++|
T Consensus 190 p~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G-~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMy 268 (830)
T KOG4152|consen 190 PITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG-CRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMY 268 (830)
T ss_pred ccccCCCCCCcccceeEEEEeccCCcceEEEEccccc-ccccceeEEecceeecccccccCCCCCCcccccceeecceeE
Confidence 99999999999999999883 248999999865 578999999999999999998899999999999999999999
Q ss_pred EEecCCCC--------------CCcceEEEEECCCCcEEEecc--CC-CCCCCCCCCcceEEEEEcCCcEEEEEeccCCC
Q 012184 220 IVGGGDNN--------------NGCQETIVLNMTKLAWSILTS--VK-GRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK 282 (469)
Q Consensus 220 v~GG~~~~--------------~~~~d~~~~d~~~~~W~~~~~--~~-~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~ 282 (469)
||||.-.. .|.+.+-.+|+.+..|..+-. .. ..+|.+|.||+++++ +.+||+--|.++.
T Consensus 269 vfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAi----gtRlYiWSGRDGY 344 (830)
T KOG4152|consen 269 VFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAI----GTRLYIWSGRDGY 344 (830)
T ss_pred EecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEe----ccEEEEEeccchh
Confidence 99996211 246778899999999987632 22 236889999999998 8999999998753
Q ss_pred --------CCceEEEEECC
Q 012184 283 --------YNNEVFVMRLK 293 (469)
Q Consensus 283 --------~~~~~~~~d~~ 293 (469)
.+.|+|.+|..
T Consensus 345 rKAwnnQVCCkDlWyLdTe 363 (830)
T KOG4152|consen 345 RKAWNNQVCCKDLWYLDTE 363 (830)
T ss_pred hHhhccccchhhhhhhccc
Confidence 35678888864
No 21
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=2.7e-33 Score=274.71 Aligned_cols=261 Identities=16% Similarity=0.208 Sum_probs=197.2
Q ss_pred CEEEcccCCCcccCCceEEEEcc--CCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCC----
Q 012184 1 MLLRCSIRNYTLLEGVVMVFDLR--SLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK---- 74 (469)
Q Consensus 1 l~~~GG~~~~~~~~~~~~~~d~~--~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~---- 74 (469)
|||+||... + .+++||+. ++.|..+++++ ..+|.+|++++++++||++||+...
T Consensus 41 iyv~gG~~~----~-~~~~~d~~~~~~~W~~l~~~p---------------~~~r~~~~~v~~~~~IYV~GG~~~~~~~~ 100 (376)
T PRK14131 41 VYVGLGSAG----T-SWYKLDLNAPSKGWTKIAAFP---------------GGPREQAVAAFIDGKLYVFGGIGKTNSEG 100 (376)
T ss_pred EEEEeCCCC----C-eEEEEECCCCCCCeEECCcCC---------------CCCcccceEEEECCEEEEEcCCCCCCCCC
Confidence 689999643 3 68899986 47899988763 2489999999999999999998641
Q ss_pred -CCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEE-ECCEEEEEeccCCCC--------------------------
Q 012184 75 -SSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSR-------------------------- 126 (469)
Q Consensus 75 -~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyi~GG~~~~~-------------------------- 126 (469)
....+++++||+.+++|+.++. ..|.++.+|++++ .+++||++||.....
T Consensus 101 ~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~ 178 (376)
T PRK14131 101 SPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYF 178 (376)
T ss_pred ceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHh
Confidence 1245789999999999999983 3577788888877 799999999975310
Q ss_pred -------CccCcEEEEECCCCeEEEeeeCCCCCC-CCCCceEEEEcCcEEEEEecCCCC-cccCcEEE--EECCCCceEe
Q 012184 127 -------KLLNDVHFLDLETMTWDAVEVTQTPPA-PRYDHSAALHANRYLIVFGGCSHS-IFFNDLHV--LDLQTNEWSQ 195 (469)
Q Consensus 127 -------~~~~~v~~~d~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~~l~v~GG~~~~-~~~~~i~~--~d~~~~~W~~ 195 (469)
...+++++||+.+++|+.+. ++|. +|.+|+++.+ +++|||+||.... ...+++|. ||+.+++|..
T Consensus 179 ~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~-~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~ 254 (376)
T PRK14131 179 DKKPEDYFFNKEVLSYDPSTNQWKNAG---ESPFLGTAGSAVVIK-GNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQK 254 (376)
T ss_pred cCChhhcCcCceEEEEECCCCeeeECC---cCCCCCCCcceEEEE-CCEEEEEeeeECCCcCChhheEEEecCCCcceee
Confidence 12578999999999999875 5665 6778888777 6789999997432 34455654 4668899998
Q ss_pred eeecCCCCCCCc--------ceEEEEECCEEEEEecCCCCC--------------Cc---ceEEEEECCCCcEEEeccCC
Q 012184 196 PEIKGDLVTGRA--------GHAGITIDENWYIVGGGDNNN--------------GC---QETIVLNMTKLAWSILTSVK 250 (469)
Q Consensus 196 ~~~~~~~p~~r~--------~~~~~~~~~~l~v~GG~~~~~--------------~~---~d~~~~d~~~~~W~~~~~~~ 250 (469)
+. ++|.+|. .+.++.++++|||+||.+... .. ..+.+||+.++.|+.++.+
T Consensus 255 ~~---~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l- 330 (376)
T PRK14131 255 LP---DLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGEL- 330 (376)
T ss_pred cC---CCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcC-
Confidence 76 5555553 233567899999999975321 11 2456899999999988766
Q ss_pred CCCCCCCCCcceEEEEEcCCcEEEEEeccCC--CCCceEEEEECCCCCCC
Q 012184 251 GRNPLASEGLSVCSAIIEGEHHLVAFGGYNG--KYNNEVFVMRLKPRDIP 298 (469)
Q Consensus 251 ~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~--~~~~~~~~~d~~~~~w~ 298 (469)
|.+|..++++++ ++.|||+||... ...++++.|++..+.+.
T Consensus 331 ---p~~r~~~~av~~----~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~ 373 (376)
T PRK14131 331 ---PQGLAYGVSVSW----NNGVLLIGGETAGGKAVSDVTLLSWDGKKLT 373 (376)
T ss_pred ---CCCccceEEEEe----CCEEEEEcCCCCCCcEeeeEEEEEEcCCEEE
Confidence 455667765555 789999999753 46789999998876654
No 22
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=3.9e-34 Score=261.69 Aligned_cols=231 Identities=23% Similarity=0.361 Sum_probs=196.2
Q ss_pred CEEEccc-CCC--cccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEEC-CEEEEEccccCCCC
Q 012184 1 MLLRCSI-RNY--TLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG-TKLLILGGHYKKSS 76 (469)
Q Consensus 1 l~~~GG~-~~~--~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~iy~~GG~~~~~~ 76 (469)
|+||||- .++ +.+-|+++.||..+++|..+.+. .+|+||++|.+|++- |.+|+|||.-...+
T Consensus 81 LilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~sp--------------n~P~pRsshq~va~~s~~l~~fGGEfaSPn 146 (521)
T KOG1230|consen 81 LILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSP--------------NAPPPRSSHQAVAVPSNILWLFGGEFASPN 146 (521)
T ss_pred eEEecceeecceeEEEeeeeeEEeccccceeEeccC--------------CCcCCCccceeEEeccCeEEEeccccCCcc
Confidence 6899993 222 33333999999999999999884 348899999999884 89999999654332
Q ss_pred -----CcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCC---CCccCcEEEEECCCCeEEEeeeC
Q 012184 77 -----DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRS---RKLLNDVHFLDLETMTWDAVEVT 148 (469)
Q Consensus 77 -----~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~---~~~~~~v~~~d~~t~~W~~~~~~ 148 (469)
...++|+||+.+++|+++...| .|.+|++|-|+++..+|+||||+... ..|.|++|+||++|.+|.++.+.
T Consensus 147 q~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Kleps 225 (521)
T KOG1230|consen 147 QEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPS 225 (521)
T ss_pred hhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCC
Confidence 4578999999999999999876 89999999999999999999998653 23799999999999999999998
Q ss_pred CCCCCCCCCceEEEEcCcEEEEEecCCC---------CcccCcEEEEECCC-----CceEeeeecCCCCCCCcceEEEEE
Q 012184 149 QTPPAPRYDHSAALHANRYLIVFGGCSH---------SIFFNDLHVLDLQT-----NEWSQPEIKGDLVTGRAGHAGITI 214 (469)
Q Consensus 149 g~~p~~r~~~~~~~~~~~~l~v~GG~~~---------~~~~~~i~~~d~~~-----~~W~~~~~~~~~p~~r~~~~~~~~ 214 (469)
|..|.||++|++.+..++.|||+||++. ....+|+|.+++.+ -.|.++...+..|.||+++++++.
T Consensus 226 ga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va 305 (521)
T KOG1230|consen 226 GAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVA 305 (521)
T ss_pred CCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEe
Confidence 8899999999999986777999999852 35678999999988 569999988999999999998888
Q ss_pred C-CEEEEEecCCCC---------CCcceEEEEECCCCcEEEe
Q 012184 215 D-ENWYIVGGGDNN---------NGCQETIVLNMTKLAWSIL 246 (469)
Q Consensus 215 ~-~~l~v~GG~~~~---------~~~~d~~~~d~~~~~W~~~ 246 (469)
. ++.|.|||.... ...||+|.||+..+.|...
T Consensus 306 ~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 306 KNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred cCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 5 489999996431 2378999999999999875
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=5.9e-33 Score=272.30 Aligned_cols=266 Identities=15% Similarity=0.185 Sum_probs=199.2
Q ss_pred CCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECC--CCeEEEeecCCCCC-CCCcceEEEEECCEEEEEecc
Q 012184 46 LLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLE--TNLCGVMETSGKVP-VARGGHSVTLVGSRLIIFGGE 122 (469)
Q Consensus 46 ~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~--t~~W~~~~~~g~~p-~~r~~~~~~~~~~~lyi~GG~ 122 (469)
++++|.+|..+++++++++||++||... +.+++||+. ++.|..++ ++| .+|.++++++++++||++||.
T Consensus 22 l~~lP~~~~~~~~~~~~~~iyv~gG~~~-----~~~~~~d~~~~~~~W~~l~---~~p~~~r~~~~~v~~~~~IYV~GG~ 93 (376)
T PRK14131 22 LPDLPVPFKNGTGAIDNNTVYVGLGSAG-----TSWYKLDLNAPSKGWTKIA---AFPGGPREQAVAAFIDGKLYVFGGI 93 (376)
T ss_pred CCCCCcCccCCeEEEECCEEEEEeCCCC-----CeEEEEECCCCCCCeEECC---cCCCCCcccceEEEECCEEEEEcCC
Confidence 4555888888899999999999999643 348999986 47899988 566 589999999999999999998
Q ss_pred CC-C----CCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCC--------------------
Q 012184 123 DR-S----RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS-------------------- 177 (469)
Q Consensus 123 ~~-~----~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~-------------------- 177 (469)
.. . ...++++++||+.+++|+.+++ ..|.++.+|+++++.+++||+|||....
T Consensus 94 ~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~ 171 (376)
T PRK14131 94 GKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKD 171 (376)
T ss_pred CCCCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhh
Confidence 64 1 1347899999999999999863 3467777888777458899999997531
Q ss_pred --------------cccCcEEEEECCCCceEeeeecCCCCC-CCcceEEEEECCEEEEEecCCCCC-CcceEE--EEECC
Q 012184 178 --------------IFFNDLHVLDLQTNEWSQPEIKGDLVT-GRAGHAGITIDENWYIVGGGDNNN-GCQETI--VLNMT 239 (469)
Q Consensus 178 --------------~~~~~i~~~d~~~~~W~~~~~~~~~p~-~r~~~~~~~~~~~l~v~GG~~~~~-~~~d~~--~~d~~ 239 (469)
...+++++||+.+++|..+. ++|. +|..|+++.++++|||+||..... ...+++ .||+.
T Consensus 172 ~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~ 248 (376)
T PRK14131 172 KINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG---ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGN 248 (376)
T ss_pred hhHHHHhcCChhhcCcCceEEEEECCCCeeeECC---cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCC
Confidence 12478999999999999864 5664 788889999999999999964332 234555 45678
Q ss_pred CCcEEEeccCCCCCC--CCCCCcceEEEEEcCCcEEEEEeccCCCC---------------C---ceEEEEECCCCCCCC
Q 012184 240 KLAWSILTSVKGRNP--LASEGLSVCSAIIEGEHHLVAFGGYNGKY---------------N---NEVFVMRLKPRDIPR 299 (469)
Q Consensus 240 ~~~W~~~~~~~~~~p--~~r~~~s~~~~~~~~~~~l~v~GG~~~~~---------------~---~~~~~~d~~~~~w~~ 299 (469)
+.+|..++.++.++. .++..+.+.++++ +++|||+||.+... . ..+.+||+.++.|..
T Consensus 249 ~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~ 326 (376)
T PRK14131 249 NLKWQKLPDLPPAPGGSSQEGVAGAFAGYS--NGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQK 326 (376)
T ss_pred CcceeecCCCCCCCcCCcCCccceEeceeE--CCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccc
Confidence 899999987754321 1111111112222 56899999975311 1 235689999999999
Q ss_pred ccccCCCchhhcch-hhhHHHhhccccc
Q 012184 300 PKIFQSPAAAAAAA-SVTAAYALAKSEK 326 (469)
Q Consensus 300 ~~~~~~~~~~~~~~-~~~~~~~~gg~~~ 326 (469)
+..+|.++..+.++ +...+|++||...
T Consensus 327 ~~~lp~~r~~~~av~~~~~iyv~GG~~~ 354 (376)
T PRK14131 327 VGELPQGLAYGVSVSWNNGVLLIGGETA 354 (376)
T ss_pred cCcCCCCccceEEEEeCCEEEEEcCCCC
Confidence 99999888777544 4566999999754
No 24
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=5.9e-33 Score=279.80 Aligned_cols=205 Identities=18% Similarity=0.213 Sum_probs=181.6
Q ss_pred CEEEcccCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcce
Q 012184 1 MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI 80 (469)
Q Consensus 1 l~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~ 80 (469)
||++||.......+ .++.|||.+++|..++++ |.+|..+++++++++||++||.... ++
T Consensus 274 lyviGG~~~~~~~~-~v~~Ydp~~~~W~~~~~m----------------~~~r~~~~~v~~~~~iYviGG~~~~----~s 332 (480)
T PHA02790 274 VYLIGGWMNNEIHN-NAIAVNYISNNWIPIPPM----------------NSPRLYASGVPANNKLYVVGGLPNP----TS 332 (480)
T ss_pred EEEEcCCCCCCcCC-eEEEEECCCCEEEECCCC----------------CchhhcceEEEECCEEEEECCcCCC----Cc
Confidence 68999987666677 899999999999999998 7789999999999999999997532 45
Q ss_pred EEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceE
Q 012184 81 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSA 160 (469)
Q Consensus 81 ~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~ 160 (469)
+++||+.+++|..++ ++|.+|.++++++++++||++||.... .+.+.+|||.+++|+.++ ++|.||.+|++
T Consensus 333 ve~ydp~~n~W~~~~---~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~---~m~~~r~~~~~ 403 (480)
T PHA02790 333 VERWFHGDAAWVNMP---SLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGP---STYYPHYKSCA 403 (480)
T ss_pred eEEEECCCCeEEECC---CCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCC---CCCCccccceE
Confidence 899999999999998 899999999999999999999998542 467999999999999986 77899999999
Q ss_pred EEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCC
Q 012184 161 ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTK 240 (469)
Q Consensus 161 ~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~ 240 (469)
+++ +++||++||. +.+||+.+++|+.++ ++|.+|..++++.++++||++||.+.....+.++.||+.+
T Consensus 404 ~~~-~~~IYv~GG~--------~e~ydp~~~~W~~~~---~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 404 LVF-GRRLFLVGRN--------AEFYCESSNTWTLID---DPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred EEE-CCEEEEECCc--------eEEecCCCCcEeEcC---CCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCC
Confidence 888 6789999983 578999999999875 7889999999999999999999987655567899999999
Q ss_pred CcEEEec
Q 012184 241 LAWSILT 247 (469)
Q Consensus 241 ~~W~~~~ 247 (469)
++|+...
T Consensus 472 ~~W~~~~ 478 (480)
T PHA02790 472 YSWNIWD 478 (480)
T ss_pred CeEEecC
Confidence 9998753
No 25
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=5.5e-31 Score=265.56 Aligned_cols=210 Identities=14% Similarity=0.180 Sum_probs=180.0
Q ss_pred eEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEEC
Q 012184 58 MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDL 137 (469)
Q Consensus 58 ~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~ 137 (469)
++..++.||++||.... ...+.+++||+.+++|..++ ++|.+|..+++++++++||++||.+. .+++++||+
T Consensus 267 ~~~~~~~lyviGG~~~~-~~~~~v~~Ydp~~~~W~~~~---~m~~~r~~~~~v~~~~~iYviGG~~~----~~sve~ydp 338 (480)
T PHA02790 267 STHVGEVVYLIGGWMNN-EIHNNAIAVNYISNNWIPIP---PMNSPRLYASGVPANNKLYVVGGLPN----PTSVERWFH 338 (480)
T ss_pred eEEECCEEEEEcCCCCC-CcCCeEEEEECCCCEEEECC---CCCchhhcceEEEECCEEEEECCcCC----CCceEEEEC
Confidence 34589999999997543 35677999999999999999 88999999999999999999999753 256999999
Q ss_pred CCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCE
Q 012184 138 ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN 217 (469)
Q Consensus 138 ~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~ 217 (469)
.+++|..++ ++|.+|.+|+++++ +++||++||.... .+.+.+|||.+++|+.++ ++|.+|..|+++.++++
T Consensus 339 ~~n~W~~~~---~l~~~r~~~~~~~~-~g~IYviGG~~~~--~~~ve~ydp~~~~W~~~~---~m~~~r~~~~~~~~~~~ 409 (480)
T PHA02790 339 GDAAWVNMP---SLLKPRCNPAVASI-NNVIYVIGGHSET--DTTTEYLLPNHDQWQFGP---STYYPHYKSCALVFGRR 409 (480)
T ss_pred CCCeEEECC---CCCCCCcccEEEEE-CCEEEEecCcCCC--CccEEEEeCCCCEEEeCC---CCCCccccceEEEECCE
Confidence 999999886 78899999999988 7789999997543 367999999999999865 78999999999999999
Q ss_pred EEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC-CCceEEEEECCCCC
Q 012184 218 WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRD 296 (469)
Q Consensus 218 l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~d~~~~~ 296 (469)
|||+||. +..||+.+++|+.++++ |.+|.+++++++ +++|||+||.++. ..+.+.+||+.++.
T Consensus 410 IYv~GG~--------~e~ydp~~~~W~~~~~m----~~~r~~~~~~v~----~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 410 LFLVGRN--------AEFYCESSNTWTLIDDP----IYPRDNPELIIV----DNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred EEEECCc--------eEEecCCCCcEeEcCCC----CCCccccEEEEE----CCEEEEECCcCCCcccceEEEEECCCCe
Confidence 9999983 57899999999998766 356778877766 7899999998643 35779999999999
Q ss_pred CCCc
Q 012184 297 IPRP 300 (469)
Q Consensus 297 w~~~ 300 (469)
|...
T Consensus 474 W~~~ 477 (480)
T PHA02790 474 WNIW 477 (480)
T ss_pred EEec
Confidence 9743
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=2.6e-32 Score=255.42 Aligned_cols=283 Identities=22% Similarity=0.361 Sum_probs=233.0
Q ss_pred cCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCC
Q 012184 23 RSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPV 102 (469)
Q Consensus 23 ~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~ 102 (469)
.--+|+.+.... ++.|.+|.+|.++++..-|.+|||-+++ ..+.+++||..++.|..-...|+.|+
T Consensus 15 ~~~rWrrV~~~t------------GPvPrpRHGHRAVaikELiviFGGGNEG--iiDELHvYNTatnqWf~PavrGDiPp 80 (830)
T KOG4152|consen 15 NVVRWRRVQQST------------GPVPRPRHGHRAVAIKELIVIFGGGNEG--IIDELHVYNTATNQWFAPAVRGDIPP 80 (830)
T ss_pred cccceEEEeccc------------CCCCCccccchheeeeeeEEEecCCccc--chhhhhhhccccceeecchhcCCCCC
Confidence 345899988765 4568999999999999999999996654 45679999999999999999999999
Q ss_pred CCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeee----CCCCCCCCCCceEEEEcCcEEEEEecCCCC-
Q 012184 103 ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEV----TQTPPAPRYDHSAALHANRYLIVFGGCSHS- 177 (469)
Q Consensus 103 ~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~----~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~- 177 (469)
+-..|+.+..+.+||+|||.-..+.|+|++|.+..+...|+++.+ .|.+|.||-+|+...++ ++.|+|||...+
T Consensus 81 gcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~g-nKcYlFGGLaNds 159 (830)
T KOG4152|consen 81 GCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVG-NKCYLFGGLANDS 159 (830)
T ss_pred chhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEec-cEeEEeccccccc
Confidence 999999999999999999998888899999999888889988866 47789999999999995 679999996432
Q ss_pred --------cccCcEEEEECCCCc----eEeeeecCCCCCCCcceEEEEE------CCEEEEEecCCCCCCcceEEEEECC
Q 012184 178 --------IFFNDLHVLDLQTNE----WSQPEIKGDLVTGRAGHAGITI------DENWYIVGGGDNNNGCQETIVLNMT 239 (469)
Q Consensus 178 --------~~~~~i~~~d~~~~~----W~~~~~~~~~p~~r~~~~~~~~------~~~l~v~GG~~~~~~~~d~~~~d~~ 239 (469)
.++||+|++++.-+. |+.+.+.|..|.+|-.|+++++ ..+|||+||.++. .+.|+|.+|++
T Consensus 160 eDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~ 238 (830)
T KOG4152|consen 160 EDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLD 238 (830)
T ss_pred cCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc-cccceeEEecc
Confidence 468999999998543 9999889999999999999988 2479999998654 48899999999
Q ss_pred CCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccC-----C----------CCCceEEEEECCCCCCCCcc---
Q 012184 240 KLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN-----G----------KYNNEVFVMRLKPRDIPRPK--- 301 (469)
Q Consensus 240 ~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~-----~----------~~~~~~~~~d~~~~~w~~~~--- 301 (469)
+..|.+. .+.+..|.+|..|+...+ +++||||||.- . +..+.+-++++++..|..+-
T Consensus 239 Tl~W~kp-~~~G~~PlPRSLHsa~~I----GnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~ 313 (830)
T KOG4152|consen 239 TLTWNKP-SLSGVAPLPRSLHSATTI----GNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDT 313 (830)
T ss_pred eeecccc-cccCCCCCCcccccceee----cceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeecc
Confidence 9999995 456888999999999888 89999999962 0 12456777888888886432
Q ss_pred ----ccCCCchhhcchh-hhHHHhhccccc
Q 012184 302 ----IFQSPAAAAAAAS-VTAAYALAKSEK 326 (469)
Q Consensus 302 ----~~~~~~~~~~~~~-~~~~~~~gg~~~ 326 (469)
..|.++..|+++. .+.+|.-+|...
T Consensus 314 ~ed~tiPR~RAGHCAvAigtRlYiWSGRDG 343 (830)
T KOG4152|consen 314 LEDNTIPRARAGHCAVAIGTRLYIWSGRDG 343 (830)
T ss_pred ccccccccccccceeEEeccEEEEEeccch
Confidence 2466666665544 445666666544
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.82 E-value=4.9e-19 Score=161.03 Aligned_cols=271 Identities=17% Similarity=0.245 Sum_probs=198.3
Q ss_pred CCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECC--CCeEEEeecCCCCC-CCCcceEEEEECCEEEEEec
Q 012184 45 GLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLE--TNLCGVMETSGKVP-VARGGHSVTLVGSRLIIFGG 121 (469)
Q Consensus 45 ~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~--t~~W~~~~~~g~~p-~~r~~~~~~~~~~~lyi~GG 121 (469)
++|..|.+--.-+.+.+++.+|+-=|..+.. .|.+|+. ...|++++ ..| .+|.+..+++++++||+|||
T Consensus 29 ~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G~a-----fy~ldL~~~~k~W~~~a---~FpG~~rnqa~~a~~~~kLyvFgG 100 (381)
T COG3055 29 QLPDLPVGFKNGAGALIGDTVYVGLGSAGTA-----FYVLDLKKPGKGWTKIA---DFPGGARNQAVAAVIGGKLYVFGG 100 (381)
T ss_pred cCCCCCccccccccceecceEEEEeccCCcc-----ceehhhhcCCCCceEcc---cCCCcccccchheeeCCeEEEeec
Confidence 3566688877778889999999987743332 6777775 45799998 555 67999999999999999999
Q ss_pred cCCCCC----ccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCC--------------------
Q 012184 122 EDRSRK----LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS-------------------- 177 (469)
Q Consensus 122 ~~~~~~----~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~-------------------- 177 (469)
...... ..|++|+||+.+++|..+.+ ..|....++.++.+++..+|++||.+..
T Consensus 101 ~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~ 178 (381)
T COG3055 101 YGKSVSSSPQVFNDAYRYDPSTNSWHKLDT--RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVD 178 (381)
T ss_pred cccCCCCCceEeeeeEEecCCCChhheecc--ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHH
Confidence 875432 57899999999999999986 3466678899999977799999997521
Q ss_pred --------------cccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCC-CcceEEEEEC--CC
Q 012184 178 --------------IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN-GCQETIVLNM--TK 240 (469)
Q Consensus 178 --------------~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~-~~~d~~~~d~--~~ 240 (469)
....++..|+|.+++|..+-. .+..++++.+.+.-++++.++-|.-..+ .+..++++++ ..
T Consensus 179 ~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~--~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~ 256 (381)
T COG3055 179 KIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE--NPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDN 256 (381)
T ss_pred HHHHHHhCCCHHHhcccccccccccccchhhhcCc--CcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCc
Confidence 034579999999999998631 3356788866666677788887754433 2445666666 46
Q ss_pred CcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccC--------------------CCCCceEEEEECCCCCCCCc
Q 012184 241 LAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN--------------------GKYNNEVFVMRLKPRDIPRP 300 (469)
Q Consensus 241 ~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~--------------------~~~~~~~~~~d~~~~~w~~~ 300 (469)
..|..++.+|.+....-.+.+-...-.. ++.++|.||.+ ..+.++||.|| .+.|..+
T Consensus 257 ~~w~~l~~lp~~~~~~~eGvAGaf~G~s-~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~ 333 (381)
T COG3055 257 LKWLKLSDLPAPIGSNKEGVAGAFSGKS-NGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIV 333 (381)
T ss_pred eeeeeccCCCCCCCCCccccceecccee-CCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeee
Confidence 7899998777655333233332222111 67888899864 13578899999 8999999
Q ss_pred cccCCCchhh-cchhhhHHHhhcccccccCc
Q 012184 301 KIFQSPAAAA-AAASVTAAYALAKSEKLDIP 330 (469)
Q Consensus 301 ~~~~~~~~~~-~~~~~~~~~~~gg~~~~~~~ 330 (469)
..+|.+.... +......++++||+...-..
T Consensus 334 GeLp~~l~YG~s~~~nn~vl~IGGE~~~Gka 364 (381)
T COG3055 334 GELPQGLAYGVSLSYNNKVLLIGGETSGGKA 364 (381)
T ss_pred cccCCCccceEEEecCCcEEEEccccCCCee
Confidence 9998865554 44556679999998866544
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.75 E-value=1.4e-16 Score=145.20 Aligned_cols=244 Identities=19% Similarity=0.257 Sum_probs=174.0
Q ss_pred ceEEEEccC--CceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCC----CcceEEEEECCCC
Q 012184 16 VVMVFDLRS--LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS----DSMIVRFIDLETN 89 (469)
Q Consensus 16 ~~~~~d~~~--~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~----~~~~~~~~d~~t~ 89 (469)
..+.+|+.. ..|..+...+.. +|.+..+++++++||+|||...... ..+++|+||+.++
T Consensus 59 afy~ldL~~~~k~W~~~a~FpG~---------------~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~n 123 (381)
T COG3055 59 AFYVLDLKKPGKGWTKIADFPGG---------------ARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTN 123 (381)
T ss_pred cceehhhhcCCCCceEcccCCCc---------------ccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCC
Confidence 567778754 589999998643 8999999999999999999876543 5689999999999
Q ss_pred eEEEeecCCCCCCCCcceEEEEECC-EEEEEeccCCC---------------------------------CCccCcEEEE
Q 012184 90 LCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDRS---------------------------------RKLLNDVHFL 135 (469)
Q Consensus 90 ~W~~~~~~g~~p~~r~~~~~~~~~~-~lyi~GG~~~~---------------------------------~~~~~~v~~~ 135 (469)
+|.++.+. .|....+++++..++ .||++||++.. -.+..++..|
T Consensus 124 sW~kl~t~--sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy 201 (381)
T COG3055 124 SWHKLDTR--SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSY 201 (381)
T ss_pred hhheeccc--cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhccccccccc
Confidence 99999974 577788999999988 89999998411 1246789999
Q ss_pred ECCCCeEEEeeeCCCCC-CCCCCceEEEEcCcEEEEEecCCC-CcccCcEEEEECC--CCceEeeeecCCCCCCCc----
Q 012184 136 DLETMTWDAVEVTQTPP-APRYDHSAALHANRYLIVFGGCSH-SIFFNDLHVLDLQ--TNEWSQPEIKGDLVTGRA---- 207 (469)
Q Consensus 136 d~~t~~W~~~~~~g~~p-~~r~~~~~~~~~~~~l~v~GG~~~-~~~~~~i~~~d~~--~~~W~~~~~~~~~p~~r~---- 207 (469)
+|.++.|+.. |..| .++++ +++++.++++.++-|.-. .-++..++.+++. ..+|..+. ++|.+.+
T Consensus 202 ~p~~n~W~~~---G~~pf~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~---~lp~~~~~~~e 274 (381)
T COG3055 202 DPSTNQWRNL---GENPFYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLS---DLPAPIGSNKE 274 (381)
T ss_pred ccccchhhhc---CcCcccCccC-cceeecCCeEEEEcceecCCccccceeEEEeccCceeeeecc---CCCCCCCCCcc
Confidence 9999999887 3344 56666 445555777888877643 3566778888875 45699875 3333322
Q ss_pred ---ceEEEEECCEEEEEecCCCC-------------------CCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEE
Q 012184 208 ---GHAGITIDENWYIVGGGDNN-------------------NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSA 265 (469)
Q Consensus 208 ---~~~~~~~~~~l~v~GG~~~~-------------------~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~ 265 (469)
++-.-..++.++|.||.+-. ...+++|+|| .+.|+.+..+|... ++.+..
T Consensus 275 GvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l-----~YG~s~- 346 (381)
T COG3055 275 GVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGL-----AYGVSL- 346 (381)
T ss_pred ccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCc-----cceEEE-
Confidence 22223446788888884211 1245789998 99999998876422 122111
Q ss_pred EEcCCcEEEEEeccC--CCCCceEEEEECC
Q 012184 266 IIEGEHHLVAFGGYN--GKYNNEVFVMRLK 293 (469)
Q Consensus 266 ~~~~~~~l~v~GG~~--~~~~~~~~~~d~~ 293 (469)
..++.+|++||.+ +.....++.+...
T Consensus 347 --~~nn~vl~IGGE~~~Gka~~~v~~l~~~ 374 (381)
T COG3055 347 --SYNNKVLLIGGETSGGKATTRVYSLSWD 374 (381)
T ss_pred --ecCCcEEEEccccCCCeeeeeEEEEEEc
Confidence 1167899999975 4466677766544
No 29
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.66 E-value=5.7e-18 Score=159.38 Aligned_cols=276 Identities=18% Similarity=0.244 Sum_probs=190.4
Q ss_pred CEEEcccCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECC--EEEEEccccCCCC--
Q 012184 1 MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGT--KLLILGGHYKKSS-- 76 (469)
Q Consensus 1 l~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~--~iy~~GG~~~~~~-- 76 (469)
||+.||.+.-..++ ++|.|+...+.|+.+.--+.. |..|..|.+|..-. +||+.|-+-+...
T Consensus 275 iYLYGGWdG~~~l~-DFW~Y~v~e~~W~~iN~~t~~-------------PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~ 340 (723)
T KOG2437|consen 275 VYLYGGWDGTQDLA-DFWAYSVKENQWTCINRDTEG-------------PGARSCHRMVIDISRRKLYLLGRYLDSSVRN 340 (723)
T ss_pred EEEecCcccchhHH-HHHhhcCCcceeEEeecCCCC-------------CcchhhhhhhhhhhHhHHhhhhhcccccccc
Confidence 69999999999999 999999999999999887655 89999999998865 8999998754322
Q ss_pred ---CcceEEEEECCCCeEEEeecCC---CCCCCCcceEEEEECCE--EEEEeccCCC--CCccCcEEEEECCCCeEEEee
Q 012184 77 ---DSMIVRFIDLETNLCGVMETSG---KVPVARGGHSVTLVGSR--LIIFGGEDRS--RKLLNDVHFLDLETMTWDAVE 146 (469)
Q Consensus 77 ---~~~~~~~~d~~t~~W~~~~~~g---~~p~~r~~~~~~~~~~~--lyi~GG~~~~--~~~~~~v~~~d~~t~~W~~~~ 146 (469)
..+++|+||..++.|.-+.... -.|.....|.|++.+++ ||+|||..-. .....-+|.||+....|..+.
T Consensus 341 ~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~ 420 (723)
T KOG2437|consen 341 SKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLR 420 (723)
T ss_pred ccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHHH
Confidence 4578999999999999886321 25888999999999887 9999998532 234667999999999997654
Q ss_pred eC----CC---CCCCCCCceEEEEc-CcEEEEEecCCCCcccCcEEEEECCCCceEeeee----cCCCCCCCcceEEEEE
Q 012184 147 VT----QT---PPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI----KGDLVTGRAGHAGITI 214 (469)
Q Consensus 147 ~~----g~---~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~----~~~~p~~r~~~~~~~~ 214 (469)
.. ++ .-..|.+|++-... ++++|+|||...+.-++-...|++....-..++. ...+.+.++...-+.+
T Consensus 421 e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~ 500 (723)
T KOG2437|consen 421 EDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSEHVDIISDGTKKDSSMVPSTGFTQRATI 500 (723)
T ss_pred HHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceeccccchhhhccCcCccccCCCcchhhhccc
Confidence 21 11 12357788876654 5789999998887777777788765544332221 0112222222222333
Q ss_pred ---CCEEEEEecCCCC------CCcceEEEEECCCCcEEEeccCC--------------------CCCCCCCCCcceEEE
Q 012184 215 ---DENWYIVGGGDNN------NGCQETIVLNMTKLAWSILTSVK--------------------GRNPLASEGLSVCSA 265 (469)
Q Consensus 215 ---~~~l~v~GG~~~~------~~~~d~~~~d~~~~~W~~~~~~~--------------------~~~p~~r~~~s~~~~ 265 (469)
.+.|.+.-|+... ...+.+|+|++.++.|.++..+. ...+.+|.+|..++.
T Consensus 501 dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~I~~~~~d~dtvfsvpFp~ks~~~~~~~~rf~h~~~~d 580 (723)
T KOG2437|consen 501 DPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIYKIDQAAKDNDTVFSVPFPTKSLQEEEPCPRFAHQLVYD 580 (723)
T ss_pred CCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHhhhHHhhccCCceeeccCCcccccceeccccchhHHHHH
Confidence 3457766675321 23578999999999998763211 112455666664443
Q ss_pred EEcCCcEEEEEeccCCC------CCceEEEEEC
Q 012184 266 IIEGEHHLVAFGGYNGK------YNNEVFVMRL 292 (469)
Q Consensus 266 ~~~~~~~l~v~GG~~~~------~~~~~~~~d~ 292 (469)
.. ....|.+||..+. ...|.|.+++
T Consensus 581 L~--~~~~yl~Ggn~~~~~~~~m~l~dfW~l~I 611 (723)
T KOG2437|consen 581 LL--HKVHYLFGGNPGKSCSPKMRLDDFWSLKI 611 (723)
T ss_pred Hh--hhhhhhhcCCCCCCCCchhhhhhHHHHhh
Confidence 22 4567888987654 1344555554
No 30
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.65 E-value=1.6e-16 Score=149.83 Aligned_cols=272 Identities=18% Similarity=0.243 Sum_probs=186.7
Q ss_pred EccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECC--EEEEEccccCCCCCcceEEEEECCCCeEEEeecCC
Q 012184 21 DLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGT--KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSG 98 (469)
Q Consensus 21 d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~--~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g 98 (469)
.+.+.+|+.+++..... ... ...|..|.||.+|.-.+ .||++||+++-. ...++|.|+...+.|.-+...+
T Consensus 235 ~ey~~~W~~i~~~~~~~--~~~----~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~-~l~DFW~Y~v~e~~W~~iN~~t 307 (723)
T KOG2437|consen 235 QEYKPRWSQIIPKSTKG--DGE----DNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ-DLADFWAYSVKENQWTCINRDT 307 (723)
T ss_pred ccccccccccCchhhcc--ccc----ccCccccCcceEEEeCCCcEEEEecCcccch-hHHHHHhhcCCcceeEEeecCC
Confidence 45567899998764211 111 13388999999998855 999999998765 4677999999999999998776
Q ss_pred CCCCCCcceEEEEECC--EEEEEeccCCCC-----CccCcEEEEECCCCeEEEeeeC---CCCCCCCCCceEEEEcC-cE
Q 012184 99 KVPVARGGHSVTLVGS--RLIIFGGEDRSR-----KLLNDVHFLDLETMTWDAVEVT---QTPPAPRYDHSAALHAN-RY 167 (469)
Q Consensus 99 ~~p~~r~~~~~~~~~~--~lyi~GG~~~~~-----~~~~~v~~~d~~t~~W~~~~~~---g~~p~~r~~~~~~~~~~-~~ 167 (469)
..|-+|..|-|+..-. +||++|-+-+.. ....++|+||.+++.|..+.-. ..-|...+.|.|+++++ +.
T Consensus 308 ~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~ 387 (723)
T KOG2437|consen 308 EGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHM 387 (723)
T ss_pred CCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcce
Confidence 7899999999998766 899999874422 2467899999999999988642 13477889999999864 35
Q ss_pred EEEEecCCCC---cccCcEEEEECCCCceEeeeec----C---CCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEE
Q 012184 168 LIVFGGCSHS---IFFNDLHVLDLQTNEWSQPEIK----G---DLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIV 235 (469)
Q Consensus 168 l~v~GG~~~~---~~~~~i~~~d~~~~~W~~~~~~----~---~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~ 235 (469)
+|||||.... ....-+|.||.....|..+... + .....|.+|.+-.+ ++++|++||......++=+..
T Consensus 388 iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~ 467 (723)
T KOG2437|consen 388 IYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFS 467 (723)
T ss_pred EEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhc
Confidence 9999997543 3456799999999999875421 1 11345778876544 568999999765555554556
Q ss_pred EECCCCcEEEeccC--CCCCCCCCCCcceEEEEEcC-CcEEEEEeccC-------CCCCceEEEEECCCCCCCCc
Q 012184 236 LNMTKLAWSILTSV--KGRNPLASEGLSVCSAIIEG-EHHLVAFGGYN-------GKYNNEVFVMRLKPRDIPRP 300 (469)
Q Consensus 236 ~d~~~~~W~~~~~~--~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~-------~~~~~~~~~~d~~~~~w~~~ 300 (469)
||+....=..+... ....-.|..++... .++++ .+.|.+.-|.. +...+.+|+|++.++.|...
T Consensus 468 y~I~~E~~~~~s~~~k~dsS~~pS~~f~qR-s~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI 541 (723)
T KOG2437|consen 468 YDIDSEHVDIISDGTKKDSSMVPSTGFTQR-ATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCI 541 (723)
T ss_pred ceeccccchhhhccCcCccccCCCcchhhh-cccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhH
Confidence 65543322211110 00001112233333 23344 66777777753 22567899999999988643
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.25 E-value=1.6e-11 Score=82.87 Aligned_cols=50 Identities=30% Similarity=0.346 Sum_probs=45.8
Q ss_pred CCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCC
Q 012184 52 PMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVAR 104 (469)
Q Consensus 52 ~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r 104 (469)
+|.+|++++++++||++||.......++++++||+.|++|+.++ +||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence 68999999999999999999886667899999999999999998 788876
No 32
>PLN02772 guanylate kinase
Probab=99.23 E-value=7.8e-11 Score=112.28 Aligned_cols=90 Identities=21% Similarity=0.284 Sum_probs=79.8
Q ss_pred CCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcc
Q 012184 100 VPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIF 179 (469)
Q Consensus 100 ~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~ 179 (469)
.+.++..++++++++++|+|||.+.....++.+++||+.|++|..+.+.|..|.||.+|+++++++++|+||++.+...
T Consensus 21 ~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~- 99 (398)
T PLN02772 21 GVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD- 99 (398)
T ss_pred cCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc-
Confidence 4568899999999999999999888665789999999999999999999999999999999999999999999865442
Q ss_pred cCcEEEEECCCC
Q 012184 180 FNDLHVLDLQTN 191 (469)
Q Consensus 180 ~~~i~~~d~~~~ 191 (469)
.++|.+.+.|.
T Consensus 100 -~~~w~l~~~t~ 110 (398)
T PLN02772 100 -DSIWFLEVDTP 110 (398)
T ss_pred -cceEEEEcCCH
Confidence 67898887764
No 33
>PF13964 Kelch_6: Kelch motif
Probab=99.18 E-value=6.8e-11 Score=79.78 Aligned_cols=50 Identities=46% Similarity=0.766 Sum_probs=45.3
Q ss_pred CCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCC
Q 012184 103 ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR 155 (469)
Q Consensus 103 ~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r 155 (469)
+|.+|++++++++||+|||.......++++++||+.+++|+.++ ++|.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence 58899999999999999999886667999999999999999996 777776
No 34
>PLN02772 guanylate kinase
Probab=99.08 E-value=8.9e-10 Score=105.16 Aligned_cols=88 Identities=22% Similarity=0.310 Sum_probs=77.2
Q ss_pred CCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEEC-CEEEEEeccCCCCCc
Q 012184 50 LPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKL 128 (469)
Q Consensus 50 p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyi~GG~~~~~~~ 128 (469)
+.++.+|+++.+++++|+|||.......++.+++||+.|.+|......|..|.+|.+|++++++ ++|+||++....
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~--- 98 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP--- 98 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC---
Confidence 4588999999999999999998876557899999999999999999999999999999999995 689999876553
Q ss_pred cCcEEEEECCCC
Q 012184 129 LNDVHFLDLETM 140 (469)
Q Consensus 129 ~~~v~~~d~~t~ 140 (469)
-+++|.+.+.|.
T Consensus 99 ~~~~w~l~~~t~ 110 (398)
T PLN02772 99 DDSIWFLEVDTP 110 (398)
T ss_pred ccceEEEEcCCH
Confidence 367898887764
No 35
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.03 E-value=5.6e-10 Score=74.28 Aligned_cols=44 Identities=30% Similarity=0.385 Sum_probs=41.0
Q ss_pred CCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184 52 PMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME 95 (469)
Q Consensus 52 ~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~ 95 (469)
||.+|++++++++||++||.......++++++||+.+++|+.++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 68999999999999999999986678899999999999999998
No 36
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.03 E-value=7.6e-10 Score=74.15 Aligned_cols=48 Identities=42% Similarity=0.758 Sum_probs=42.5
Q ss_pred CCEEEEEeccC-CCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEE
Q 012184 113 GSRLIIFGGED-RSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH 163 (469)
Q Consensus 113 ~~~lyi~GG~~-~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~ 163 (469)
+++||||||.+ .....+|++|+||+.+++|+.+ +++|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 57899999998 4556799999999999999988 588999999999874
No 37
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.00 E-value=8.6e-10 Score=73.89 Aligned_cols=48 Identities=31% Similarity=0.504 Sum_probs=42.4
Q ss_pred CCEEEEEcccc-CCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE
Q 012184 62 GTKLLILGGHY-KKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV 112 (469)
Q Consensus 62 ~~~iy~~GG~~-~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~ 112 (469)
|++||||||.. .....++++|+||+.+++|+++. ++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~---~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIG---DLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECC---CCCCCccceEEEEC
Confidence 68999999998 34557899999999999999994 89999999999874
No 38
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.99 E-value=1.3e-08 Score=90.50 Aligned_cols=159 Identities=21% Similarity=0.345 Sum_probs=107.5
Q ss_pred EEEEEeccCCCCCccCcEEEEECCCCe--------EEEeeeCCCCCCCCCCceEEEEc---CcEEEEEecCCCC------
Q 012184 115 RLIIFGGEDRSRKLLNDVHFLDLETMT--------WDAVEVTQTPPAPRYDHSAALHA---NRYLIVFGGCSHS------ 177 (469)
Q Consensus 115 ~lyi~GG~~~~~~~~~~v~~~d~~t~~--------W~~~~~~g~~p~~r~~~~~~~~~---~~~l~v~GG~~~~------ 177 (469)
..+|.||.+.+...++.+|+..+.+.. +.+....|+.|.+|++|++.++. ....++|||.+.-
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 366779999988889999998876543 45555578999999999998774 4578899997421
Q ss_pred --------cccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCC--CcceEEEEECC--CC-cEE
Q 012184 178 --------IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN--GCQETIVLNMT--KL-AWS 244 (469)
Q Consensus 178 --------~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~--~~~d~~~~d~~--~~-~W~ 244 (469)
.+...|+.+|++-+..+... .+.+..+-++|.+..-+|.+|++||+.-.. ....++++.+. -+ -..
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~-lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~v 198 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHT-LPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAV 198 (337)
T ss_pred hhhcceeccCCCeEEEEecccccccccc-chhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCcee
Confidence 24567999999988887654 346677889998888899999999985433 23445554321 11 111
Q ss_pred EeccCCCCCCCCCCCcceEE--EEEcCCcEEEEEeccCC
Q 012184 245 ILTSVKGRNPLASEGLSVCS--AIIEGEHHLVAFGGYNG 281 (469)
Q Consensus 245 ~~~~~~~~~p~~r~~~s~~~--~~~~~~~~l~v~GG~~~ 281 (469)
.+..+. .+.++.+ ++-.+.+..+|+||+..
T Consensus 199 sC~vl~-------~glSisSAIvt~~~~~e~iIlGGY~s 230 (337)
T PF03089_consen 199 SCTVLQ-------GGLSISSAIVTQTGPHEYIILGGYQS 230 (337)
T ss_pred EEEECC-------CCceEeeeeEeecCCCceEEEecccc
Confidence 111111 2333333 33344678999999853
No 39
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.94 E-value=3e-09 Score=71.27 Aligned_cols=45 Identities=29% Similarity=0.309 Sum_probs=40.0
Q ss_pred CCcCeeeEEECCEEEEEccc--cCCCCCcceEEEEECCCCeEEEeec
Q 012184 52 PMSDHCMVKWGTKLLILGGH--YKKSSDSMIVRFIDLETNLCGVMET 96 (469)
Q Consensus 52 ~r~~~~~~~~~~~iy~~GG~--~~~~~~~~~~~~~d~~t~~W~~~~~ 96 (469)
||.+|++++++++||+|||+ .......+++++||+.+.+|+.+++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 68999999999999999999 3444578999999999999999983
No 40
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.92 E-value=3.4e-09 Score=71.00 Aligned_cols=46 Identities=33% Similarity=0.580 Sum_probs=40.8
Q ss_pred CCcceEEEEECCEEEEEecc--CCCCCccCcEEEEECCCCeEEEeeeC
Q 012184 103 ARGGHSVTLVGSRLIIFGGE--DRSRKLLNDVHFLDLETMTWDAVEVT 148 (469)
Q Consensus 103 ~r~~~~~~~~~~~lyi~GG~--~~~~~~~~~v~~~d~~t~~W~~~~~~ 148 (469)
+|.+|++++++++||+|||+ .......+++++||+.+++|+.++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 68999999999999999999 44556899999999999999998743
No 41
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.92 E-value=1.4e-09 Score=73.00 Aligned_cols=47 Identities=23% Similarity=0.360 Sum_probs=32.0
Q ss_pred CCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCC
Q 012184 52 PMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVP 101 (469)
Q Consensus 52 ~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p 101 (469)
||.+|+++.+ ++.||||||........+++|.||+.+++|++++ ++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~---~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP---SMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-----SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC---CCC
Confidence 6999999999 5899999999887678899999999999999996 555
No 42
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.91 E-value=2.4e-09 Score=71.15 Aligned_cols=45 Identities=33% Similarity=0.649 Sum_probs=41.1
Q ss_pred CCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeee
Q 012184 103 ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEV 147 (469)
Q Consensus 103 ~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~ 147 (469)
+|.+|++++++++||++||.+.....++++++||+.+++|+.+++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCC
Confidence 689999999999999999999866789999999999999999873
No 43
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.90 E-value=5.4e-07 Score=80.43 Aligned_cols=159 Identities=22% Similarity=0.269 Sum_probs=102.4
Q ss_pred EEEEccccCCCCCcceEEEEECCCCe--------EEEeecCCCCCCCCcceEEEEEC--C--EEEEEeccCCC-------
Q 012184 65 LLILGGHYKKSSDSMIVRFIDLETNL--------CGVMETSGKVPVARGGHSVTLVG--S--RLIIFGGEDRS------- 125 (469)
Q Consensus 65 iy~~GG~~~~~~~~~~~~~~d~~t~~--------W~~~~~~g~~p~~r~~~~~~~~~--~--~lyi~GG~~~~------- 125 (469)
-++-||.+.++..++.+|++...+.. .......|+.|.+|++|++.++. + -+++|||..--
T Consensus 41 YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTT 120 (337)
T PF03089_consen 41 YLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTT 120 (337)
T ss_pred EEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccch
Confidence 45669999988888899998876554 33444568999999999999883 2 48999997421
Q ss_pred ------CCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCC--CcccCcEEEEECCCC---ceE
Q 012184 126 ------RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH--SIFFNDLHVLDLQTN---EWS 194 (469)
Q Consensus 126 ------~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~--~~~~~~i~~~d~~~~---~W~ 194 (469)
-.+...|+.+|+.-+.++.... ..+....+.|.+.+- ++.+|++||+.- +.+...++++..+-- -+.
T Consensus 121 enWNsVvDC~P~VfLiDleFGC~tah~l-pEl~dG~SFHvslar-~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~v 198 (337)
T PF03089_consen 121 ENWNSVVDCPPQVFLIDLEFGCCTAHTL-PELQDGQSFHVSLAR-NDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAV 198 (337)
T ss_pred hhcceeccCCCeEEEEeccccccccccc-hhhcCCeEEEEEEec-CceEEEEccEEccCCCCCCcEEEEEEeecCCCcee
Confidence 1245679999999998876642 234455666666665 778999999854 345556666653211 111
Q ss_pred eeeecCCCCCCCcceEE--EEEC-CEEEEEecCCCCC
Q 012184 195 QPEIKGDLVTGRAGHAG--ITID-ENWYIVGGGDNNN 228 (469)
Q Consensus 195 ~~~~~~~~p~~r~~~~~--~~~~-~~l~v~GG~~~~~ 228 (469)
... .++.+.+..+| +..+ +..+|+||+....
T Consensus 199 sC~---vl~~glSisSAIvt~~~~~e~iIlGGY~sds 232 (337)
T PF03089_consen 199 SCT---VLQGGLSISSAIVTQTGPHEYIILGGYQSDS 232 (337)
T ss_pred EEE---ECCCCceEeeeeEeecCCCceEEEecccccc
Confidence 111 12233333222 2223 5688899985543
No 44
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.84 E-value=3.7e-09 Score=70.90 Aligned_cols=44 Identities=41% Similarity=0.733 Sum_probs=30.0
Q ss_pred CCCCceEEEEcCcEEEEEecCCCC-cccCcEEEEECCCCceEeee
Q 012184 154 PRYDHSAALHANRYLIVFGGCSHS-IFFNDLHVLDLQTNEWSQPE 197 (469)
Q Consensus 154 ~r~~~~~~~~~~~~l~v~GG~~~~-~~~~~i~~~d~~~~~W~~~~ 197 (469)
||++|+++.+.+++||||||.+.. ..++++|+||+.+++|+.+.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~ 45 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP 45 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC
Confidence 699999999977899999999776 68999999999999999983
No 45
>PF13854 Kelch_5: Kelch motif
Probab=98.79 E-value=1.3e-08 Score=65.48 Aligned_cols=40 Identities=28% Similarity=0.320 Sum_probs=35.9
Q ss_pred CCCCcCeeeEEECCEEEEEccccC-CCCCcceEEEEECCCC
Q 012184 50 LPPMSDHCMVKWGTKLLILGGHYK-KSSDSMIVRFIDLETN 89 (469)
Q Consensus 50 p~~r~~~~~~~~~~~iy~~GG~~~-~~~~~~~~~~~d~~t~ 89 (469)
|.+|.+|++++++++||+|||... ....++++|+||+.++
T Consensus 2 P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 2 PSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 889999999999999999999984 5567899999999874
No 46
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.71 E-value=2.1e-06 Score=77.56 Aligned_cols=176 Identities=14% Similarity=0.144 Sum_probs=109.4
Q ss_pred EEEEECCCCeEEEeecCCCCCCCCcceE-EEEECCEEEEEeccCCCCCccCcEEEEECCC----CeEEEeeeCCCCCCCC
Q 012184 81 VRFIDLETNLCGVMETSGKVPVARGGHS-VTLVGSRLIIFGGEDRSRKLLNDVHFLDLET----MTWDAVEVTQTPPAPR 155 (469)
Q Consensus 81 ~~~~d~~t~~W~~~~~~g~~p~~r~~~~-~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t----~~W~~~~~~g~~p~~r 155 (469)
--.||+.|++++.+... .-....+ +..-++++++.||.... ...+..|++.+ ..|.+... .|..+|
T Consensus 48 s~~yD~~tn~~rpl~v~----td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~--~m~~~R 118 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQ----TDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPN--DMQSGR 118 (243)
T ss_pred EEEEecCCCcEEeccCC----CCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcc--cccCCC
Confidence 45689999999988632 2222222 22236899999998652 45677888765 67887652 478899
Q ss_pred CCceEEEEcCcEEEEEecCCCCcccCcEEEEECC-C-----CceEeeeec-CCCCCCCcceEEEEECCEEEEEecCCCCC
Q 012184 156 YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ-T-----NEWSQPEIK-GDLVTGRAGHAGITIDENWYIVGGGDNNN 228 (469)
Q Consensus 156 ~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~-~-----~~W~~~~~~-~~~p~~r~~~~~~~~~~~l~v~GG~~~~~ 228 (469)
.+.+++.+.|++++|+||... ..+-|-+. . ..|..+... ...+..-+-+....=+++|++++..
T Consensus 119 WYpT~~~L~DG~vlIvGG~~~-----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~---- 189 (243)
T PF07250_consen 119 WYPTATTLPDGRVLIVGGSNN-----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR---- 189 (243)
T ss_pred ccccceECCCCCEEEEeCcCC-----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC----
Confidence 999999999999999999762 22333332 1 122222211 1123333444445458899999773
Q ss_pred CcceEEEEECCCCcE-EEeccCCCCC-CCCCCCcceEEEEE--cC----CcEEEEEec
Q 012184 229 GCQETIVLNMTKLAW-SILTSVKGRN-PLASEGLSVCSAII--EG----EHHLVAFGG 278 (469)
Q Consensus 229 ~~~d~~~~d~~~~~W-~~~~~~~~~~-p~~r~~~s~~~~~~--~~----~~~l~v~GG 278 (469)
+..+||..++.+ +.++.+|+.. -.|-.+. .+...+ .+ ...|+|+||
T Consensus 190 ---~s~i~d~~~n~v~~~lP~lPg~~R~YP~sgs-svmLPl~~~~~~~~~~evlvCGG 243 (243)
T PF07250_consen 190 ---GSIIYDYKTNTVVRTLPDLPGGPRNYPASGS-SVMLPLTDTPPNNYTAEVLVCGG 243 (243)
T ss_pred ---CcEEEeCCCCeEEeeCCCCCCCceecCCCcc-eEEecCccCCCCCCCeEEEEeCC
Confidence 567999999987 6788877642 1122222 222223 11 347888887
No 47
>PF13854 Kelch_5: Kelch motif
Probab=98.68 E-value=5.2e-08 Score=62.65 Aligned_cols=41 Identities=39% Similarity=0.686 Sum_probs=36.5
Q ss_pred CCCCCcceEEEEECCEEEEEeccCC-CCCccCcEEEEECCCC
Q 012184 100 VPVARGGHSVTLVGSRLIIFGGEDR-SRKLLNDVHFLDLETM 140 (469)
Q Consensus 100 ~p~~r~~~~~~~~~~~lyi~GG~~~-~~~~~~~v~~~d~~t~ 140 (469)
+|.+|.+|++++++++||+|||... ....++++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4889999999999999999999994 5668999999998763
No 48
>smart00612 Kelch Kelch domain.
Probab=98.53 E-value=1.1e-07 Score=63.03 Aligned_cols=46 Identities=20% Similarity=0.233 Sum_probs=40.3
Q ss_pred CEEEcccCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECC
Q 012184 1 MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGT 63 (469)
Q Consensus 1 l~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~ 63 (469)
||++||......++ +++.|||.+++|+..+++ |.+|..|+++++++
T Consensus 2 iyv~GG~~~~~~~~-~v~~yd~~~~~W~~~~~~----------------~~~r~~~~~~~~~g 47 (47)
T smart00612 2 IYVVGGFDGGQRLK-SVEVYDPETNKWTPLPSM----------------PTPRSGHGVAVING 47 (47)
T ss_pred EEEEeCCCCCceee-eEEEECCCCCeEccCCCC----------------CCccccceEEEeCC
Confidence 69999987666778 999999999999998887 78999999988764
No 49
>smart00612 Kelch Kelch domain.
Probab=98.51 E-value=1.8e-07 Score=61.99 Aligned_cols=47 Identities=28% Similarity=0.470 Sum_probs=40.7
Q ss_pred EEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECC
Q 012184 167 YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE 216 (469)
Q Consensus 167 ~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~ 216 (469)
+||++||......++++++||+.+++|+.+. ++|.+|..|+++.+++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence 4899999876667899999999999999865 7899999999888764
No 50
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.47 E-value=0.00014 Score=66.53 Aligned_cols=200 Identities=14% Similarity=0.128 Sum_probs=109.6
Q ss_pred eEEEEECCCCeEEEeecCCCCCCC---Ccce-EEEEEC----C-EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCC
Q 012184 80 IVRFIDLETNLCGVMETSGKVPVA---RGGH-SVTLVG----S-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQT 150 (469)
Q Consensus 80 ~~~~~d~~t~~W~~~~~~g~~p~~---r~~~-~~~~~~----~-~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~ 150 (469)
.++++||.|+.|..++. ++.+ ...+ ....++ . +++.+....... ....+.+|+..++.|+.+...
T Consensus 15 ~~~V~NP~T~~~~~LP~---~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~-~~~~~~Vys~~~~~Wr~~~~~-- 88 (230)
T TIGR01640 15 RLVVWNPSTGQSRWLPT---PKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR-NQSEHQVYTLGSNSWRTIECS-- 88 (230)
T ss_pred cEEEECCCCCCEEecCC---CCCcccccccceEEEeecccCCcEEEEEEEeecCCC-CCccEEEEEeCCCCccccccC--
Confidence 48999999999999973 2221 1111 111122 2 465554432111 345789999999999998632
Q ss_pred CCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEe-eeecCCCCCCC----cceEEEEECCEEEEEecCC
Q 012184 151 PPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGDLVTGR----AGHAGITIDENWYIVGGGD 225 (469)
Q Consensus 151 ~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~~p~~r----~~~~~~~~~~~l~v~GG~~ 225 (469)
.+........+.+ ++.+|-+...........|..||+.+.+|.. +. +|..+ ....++.++++|.++....
T Consensus 89 ~~~~~~~~~~v~~-~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~L~~v~~~~ 163 (230)
T TIGR01640 89 PPHHPLKSRGVCI-NGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGKLAVLKQKK 163 (230)
T ss_pred CCCccccCCeEEE-CCEEEEEEEECCCCCcEEEEEEEcccceEeeeee----cCccccccccceEEEEECCEEEEEEecC
Confidence 1211112224445 7778877643321111269999999999995 43 23322 2335666788888776532
Q ss_pred CCCCcceEEEEE-CCCCcEEEeccCCCC-CCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184 226 NNNGCQETIVLN-MTKLAWSILTSVKGR-NPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 226 ~~~~~~d~~~~d-~~~~~W~~~~~~~~~-~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~ 295 (469)
.. ..-++|+++ .....|+++-.++.. .+..+.. ......++ ++.|++.-... ...-+..||+.++
T Consensus 164 ~~-~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~-~~~~~~~~-~g~I~~~~~~~--~~~~~~~y~~~~~ 230 (230)
T TIGR01640 164 DT-NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDD-NFLSGFTD-KGEIVLCCEDE--NPFYIFYYNVGEN 230 (230)
T ss_pred CC-CcEEEEEECCCCCCceeEEEEEcCcchhhhhhh-eeEeEEee-CCEEEEEeCCC--CceEEEEEeccCC
Confidence 21 235889886 445679986554421 1111111 11223334 35666554421 0113888888654
No 51
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.26 E-value=3e-05 Score=70.12 Aligned_cols=151 Identities=18% Similarity=0.246 Sum_probs=93.8
Q ss_pred EEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCC----CceEeeeecCCCCCCCc
Q 012184 132 VHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT----NEWSQPEIKGDLVTGRA 207 (469)
Q Consensus 132 v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~----~~W~~~~~~~~~p~~r~ 207 (469)
-..||+.+++++.+.+ +....+.+.+...|+.++++||.... ...+-.|++.+ ..|.... ..+-.+|+
T Consensus 48 s~~yD~~tn~~rpl~v----~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~e~~--~~m~~~RW 119 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTV----QTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTCDWTESP--NDMQSGRW 119 (243)
T ss_pred EEEEecCCCcEEeccC----CCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCCCceECc--ccccCCCc
Confidence 4579999999987753 33444444455568899999998653 35677888765 5688754 35889999
Q ss_pred ceEEEEE-CCEEEEEecCCCCCCcceEEEEECCC------CcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccC
Q 012184 208 GHAGITI-DENWYIVGGGDNNNGCQETIVLNMTK------LAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN 280 (469)
Q Consensus 208 ~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~------~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~ 280 (469)
..++..+ +++++|+||.... .+.|-+.. ..|..+.......+. ..+-. +.+.+++.||+++..
T Consensus 120 YpT~~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~--nlYP~--~~llPdG~lFi~an~- 189 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDTLPN--NLYPF--VHLLPDGNLFIFANR- 189 (243)
T ss_pred cccceECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhccCcc--ccCce--EEEcCCCCEEEEEcC-
Confidence 9998877 6789999997522 22332321 122222211111111 11211 222336799999974
Q ss_pred CCCCceEEEEECCCCCC-CCccccCC
Q 012184 281 GKYNNEVFVMRLKPRDI-PRPKIFQS 305 (469)
Q Consensus 281 ~~~~~~~~~~d~~~~~w-~~~~~~~~ 305 (469)
+-.+||..++.+ ...+.+|.
T Consensus 190 -----~s~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 190 -----GSIIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred -----CcEEEeCCCCeEEeeCCCCCC
Confidence 467889988876 55666654
No 52
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.22 E-value=0.00067 Score=61.95 Aligned_cols=200 Identities=13% Similarity=0.015 Sum_probs=110.0
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCe-eeEEE----CC-EEEEEccccCCCCCcceEEEEECCCC
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDH-CMVKW----GT-KLLILGGHYKKSSDSMIVRFIDLETN 89 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~-~~~~~----~~-~iy~~GG~~~~~~~~~~~~~~d~~t~ 89 (469)
.+.++||.|++|..+|....+ +.....+ ...-. +. +|..+...... .....+++|+..++
T Consensus 15 ~~~V~NP~T~~~~~LP~~~~~-------------~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~~~ 80 (230)
T TIGR01640 15 RLVVWNPSTGQSRWLPTPKSR-------------RSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLGSN 80 (230)
T ss_pred cEEEECCCCCCEEecCCCCCc-------------ccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeCCC
Confidence 789999999999999865211 0001110 11111 12 34444332211 12346899999999
Q ss_pred eEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEE-eeeCCCCCCCCC----CceEEEEc
Q 012184 90 LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDA-VEVTQTPPAPRY----DHSAALHA 164 (469)
Q Consensus 90 ~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~-~~~~g~~p~~r~----~~~~~~~~ 164 (469)
.|+.+... ++........+.+++.||.+.-..... ....|..||+.+.+|.. ++ +|..+. ...++..
T Consensus 81 ~Wr~~~~~--~~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~- 152 (230)
T TIGR01640 81 SWRTIECS--PPHHPLKSRGVCINGVLYYLAYTLKTN-PDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINY- 152 (230)
T ss_pred CccccccC--CCCccccCCeEEECCEEEEEEEECCCC-CcEEEEEEEcccceEeeeee----cCccccccccceEEEEE-
Confidence 99998732 222122222677899999887433211 11269999999999995 53 233221 2344555
Q ss_pred CcEEEEEecCCCCcccCcEEEEE-CCCCceEeeeecCCCCCCCc----ceEEEEECCEEEEEecCCCCCCcceEEEEECC
Q 012184 165 NRYLIVFGGCSHSIFFNDLHVLD-LQTNEWSQPEIKGDLVTGRA----GHAGITIDENWYIVGGGDNNNGCQETIVLNMT 239 (469)
Q Consensus 165 ~~~l~v~GG~~~~~~~~~i~~~d-~~~~~W~~~~~~~~~p~~r~----~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~ 239 (469)
+++|.++...... ..-+||+++ -....|++.-.....+.+.. ....+..++.|++.... . ...-+..||+.
T Consensus 153 ~G~L~~v~~~~~~-~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-~--~~~~~~~y~~~ 228 (230)
T TIGR01640 153 KGKLAVLKQKKDT-NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-E--NPFYIFYYNVG 228 (230)
T ss_pred CCEEEEEEecCCC-CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-C--CceEEEEEecc
Confidence 5778877654221 124677775 33567998554321111111 12334456777776542 1 01137788887
Q ss_pred CC
Q 012184 240 KL 241 (469)
Q Consensus 240 ~~ 241 (469)
++
T Consensus 229 ~~ 230 (230)
T TIGR01640 229 EN 230 (230)
T ss_pred CC
Confidence 63
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.43 E-value=0.11 Score=51.65 Aligned_cols=146 Identities=13% Similarity=0.084 Sum_probs=82.2
Q ss_pred eeEEECCEEEEEccccCCCCCcceEEEEECCCCe--EEEeec--CCCCCC---CCcceEEEEECCEEEEEeccCCCCCcc
Q 012184 57 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMET--SGKVPV---ARGGHSVTLVGSRLIIFGGEDRSRKLL 129 (469)
Q Consensus 57 ~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~--~g~~p~---~r~~~~~~~~~~~lyi~GG~~~~~~~~ 129 (469)
+-++.++.+|+..+ . ..++.+|+.+++ |+.-.. .+.... .....+-++.++.+|+.+. .
T Consensus 200 sP~v~~~~v~~~~~-~------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-------~ 265 (394)
T PRK11138 200 APATAFGGAIVGGD-N------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-------N 265 (394)
T ss_pred CCEEECCEEEEEcC-C------CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-------C
Confidence 33445677666433 1 238889988875 864321 010000 0112334456888887642 2
Q ss_pred CcEEEEECCCCe--EEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc--eEeeeecCCCCCC
Q 012184 130 NDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTG 205 (469)
Q Consensus 130 ~~v~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~ 205 (469)
..++.+|+.+++ |+... +. + ...+. .++.+|+.... ..++.+|+.+++ |.... ...
T Consensus 266 g~l~ald~~tG~~~W~~~~--~~---~---~~~~~-~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~-----~~~ 325 (394)
T PRK11138 266 GNLVALDLRSGQIVWKREY--GS---V---NDFAV-DGGRIYLVDQN------DRVYALDTRGGVELWSQSD-----LLH 325 (394)
T ss_pred CeEEEEECCCCCEEEeecC--CC---c---cCcEE-ECCEEEEEcCC------CeEEEEECCCCcEEEcccc-----cCC
Confidence 358999998875 87532 11 1 12233 37778886532 469999998764 86521 122
Q ss_pred CcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCc
Q 012184 206 RAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLA 242 (469)
Q Consensus 206 r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~ 242 (469)
+...+.+..++.+|+... ...++.+|..+.+
T Consensus 326 ~~~~sp~v~~g~l~v~~~------~G~l~~ld~~tG~ 356 (394)
T PRK11138 326 RLLTAPVLYNGYLVVGDS------EGYLHWINREDGR 356 (394)
T ss_pred CcccCCEEECCEEEEEeC------CCEEEEEECCCCC
Confidence 333344556888877532 1257888887764
No 54
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.34 E-value=0.12 Score=47.17 Aligned_cols=212 Identities=18% Similarity=0.216 Sum_probs=116.4
Q ss_pred ceEEEEccCCc--eeeeeecccccCCccccCCCCCCCCCCcCee--eEEECCEEEEEccccCCCCCcceEEEEECCCCe-
Q 012184 16 VVMVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHC--MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL- 90 (469)
Q Consensus 16 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~--~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~- 90 (469)
.+..+|+.+++ |+.-.. + +..+.. .+..++.+|+..+ ...+++||..+++
T Consensus 4 ~l~~~d~~tG~~~W~~~~~-----------------~-~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~ 58 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLG-----------------P-GIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKV 58 (238)
T ss_dssp EEEEEETTTTEEEEEEECS-----------------S-SCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEE
T ss_pred EEEEEECCCCCEEEEEECC-----------------C-CCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCE
Confidence 68899998765 877331 1 122222 4447899999832 2349999998887
Q ss_pred -EEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEeeeCCCCCCCCCCceEEEEcCcE
Q 012184 91 -CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRY 167 (469)
Q Consensus 91 -W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~ 167 (469)
|+.-. + .......+..++.+|+..+ .+.++.+|..+++ |+..... ..+.+........+.++.
T Consensus 59 ~W~~~~-----~-~~~~~~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~~~~ 124 (238)
T PF13360_consen 59 LWRFDL-----P-GPISGAPVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTS-SPPAGVRSSSSPAVDGDR 124 (238)
T ss_dssp EEEEEC-----S-SCGGSGEEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-S-SCTCSTB--SEEEEETTE
T ss_pred EEEeec-----c-ccccceeeecccccccccc-------eeeeEecccCCcceeeeecccc-ccccccccccCceEecCE
Confidence 65543 1 1112224677888888752 2369999988764 8732211 112222222223333665
Q ss_pred EEEEecCCCCcccCcEEEEECCCCc--eEeeeecCCCCC-----CCcceEEEEECCEEEEEecCCCCCCcceEEEEECCC
Q 012184 168 LIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVT-----GRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTK 240 (469)
Q Consensus 168 l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~-----~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~ 240 (469)
+|+... ...++.+|+++++ |......+.... .......+..++.+|+..+.. .+..+|..+
T Consensus 125 ~~~~~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~d~~t 192 (238)
T PF13360_consen 125 LYVGTS------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAVDLAT 192 (238)
T ss_dssp EEEEET------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEEETTT
T ss_pred EEEEec------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC------eEEEEECCC
Confidence 666543 2579999999876 776431111000 011223333457777775532 256679988
Q ss_pred Cc--EEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184 241 LA--WSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 241 ~~--W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~ 295 (469)
.. |+. + ... ........++.||+.. . ...++.+|+.+.
T Consensus 193 g~~~w~~-~-~~~----------~~~~~~~~~~~l~~~~-~----~~~l~~~d~~tG 232 (238)
T PF13360_consen 193 GEKLWSK-P-ISG----------IYSLPSVDGGTLYVTS-S----DGRLYALDLKTG 232 (238)
T ss_dssp TEEEEEE-C-SS-----------ECECEECCCTEEEEEE-T----TTEEEEEETTTT
T ss_pred CCEEEEe-c-CCC----------ccCCceeeCCEEEEEe-C----CCEEEEEECCCC
Confidence 86 743 2 221 1111112256777666 2 246999998775
No 55
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.34 E-value=0.0015 Score=68.36 Aligned_cols=109 Identities=18% Similarity=0.267 Sum_probs=74.3
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENE 432 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e 432 (469)
...|..+.+.+...+...++..++|+.++..+......+..+|++++++.++++.++..|.+. .++..+.++.+|++
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~a---Rq~DKq~l~~LEkr 496 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQA---RQQDKQSLQQLEKR 496 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 456666666677777777777777777777766666667777777777777777766666554 45556677778888
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCceeEe
Q 012184 433 VQILRQQKSAFEQEMERATSVQTQGSGGVWRW 464 (469)
Q Consensus 433 ~~~~~q~~~~~~~~~~~~~~~q~q~~~~~~~~ 464 (469)
+.+.+.+++.+|.+|.+++...++..+-..+.
T Consensus 497 L~eE~~~R~~lEkQL~eErk~r~~ee~~aar~ 528 (697)
T PF09726_consen 497 LAEERRQRASLEKQLQEERKARKEEEEKAARA 528 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhc
Confidence 88888888888888775554444444444443
No 56
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=97.28 E-value=0.02 Score=53.40 Aligned_cols=114 Identities=11% Similarity=0.070 Sum_probs=69.4
Q ss_pred CcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeC--CCCCC
Q 012184 77 DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVT--QTPPA 153 (469)
Q Consensus 77 ~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~--g~~p~ 153 (469)
.+..++.||+.+.+|..+.. -..+ .-..+... ++.||+.|-..........+-.||..+.+|..+... ..+|.
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~---~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGN---GISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPG 89 (281)
T ss_pred CCCEEEEEECCCCEeecCCC---CceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCC
Confidence 46779999999999999872 2111 11233333 567777775554442355688999999999888652 23455
Q ss_pred CCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeee
Q 012184 154 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI 198 (469)
Q Consensus 154 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~ 198 (469)
|.........+...+++.|.. . ....-+..| +..+|..+..
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~-~-~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRS-A-NGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred cEEEEEeeccCCceEEEecee-c-CCCceEEEE--cCCceEeccc
Confidence 543333333334467777765 2 112345555 4778998763
No 57
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.28 E-value=0.14 Score=46.67 Aligned_cols=170 Identities=18% Similarity=0.208 Sum_probs=97.2
Q ss_pred ceEEEEccCCc--eeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe--E
Q 012184 16 VVMVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--C 91 (469)
Q Consensus 16 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W 91 (469)
.++.||+.+++ |+.-... +.....+..++.||+..+. +.++.+|..+++ |
T Consensus 47 ~l~~~d~~tG~~~W~~~~~~-------------------~~~~~~~~~~~~v~v~~~~-------~~l~~~d~~tG~~~W 100 (238)
T PF13360_consen 47 NLYALDAKTGKVLWRFDLPG-------------------PISGAPVVDGGRVYVGTSD-------GSLYALDAKTGKVLW 100 (238)
T ss_dssp EEEEEETTTSEEEEEEECSS-------------------CGGSGEEEETTEEEEEETT-------SEEEEEETTTSCEEE
T ss_pred EEEEEECCCCCEEEEeeccc-------------------cccceeeecccccccccce-------eeeEecccCCcceee
Confidence 78999998875 5554422 1122246778999888621 159999988886 8
Q ss_pred EE-eecCCCCCC-CCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEeeeCCCCCCCCC-------CceE
Q 012184 92 GV-METSGKVPV-ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRY-------DHSA 160 (469)
Q Consensus 92 ~~-~~~~g~~p~-~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~~~~g~~p~~r~-------~~~~ 160 (469)
+. .... .+. .......+..++.+|+... ...++.+|+.+++ |.... ..+.... ..+.
T Consensus 101 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~---~~~~~~~~~~~~~~~~~~ 168 (238)
T PF13360_consen 101 SIYLTSS--PPAGVRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPV---GEPRGSSPISSFSDINGS 168 (238)
T ss_dssp EEEE-SS--CTCSTB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEES---STT-SS--EEEETTEEEE
T ss_pred eeccccc--cccccccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeec---CCCCCCcceeeecccccc
Confidence 84 4421 122 2333444445677776543 4569999999875 66543 1111111 1133
Q ss_pred EEEcCcEEEEEecCCCCcccCcEEEEECCCCc--eEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEEC
Q 012184 161 ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNM 238 (469)
Q Consensus 161 ~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~ 238 (469)
.++.++.+|+..+.. .+..+|+.++. |... +.. ........++.+|+.. . ...++.+|+
T Consensus 169 ~~~~~~~v~~~~~~g------~~~~~d~~tg~~~w~~~------~~~-~~~~~~~~~~~l~~~~-~-----~~~l~~~d~ 229 (238)
T PF13360_consen 169 PVISDGRVYVSSGDG------RVVAVDLATGEKLWSKP------ISG-IYSLPSVDGGTLYVTS-S-----DGRLYALDL 229 (238)
T ss_dssp EECCTTEEEEECCTS------SEEEEETTTTEEEEEEC------SS--ECECEECCCTEEEEEE-T-----TTEEEEEET
T ss_pred eEEECCEEEEEcCCC------eEEEEECCCCCEEEEec------CCC-ccCCceeeCCEEEEEe-C-----CCEEEEEEC
Confidence 334456788876543 25667999887 8442 111 1112344466777765 2 247899999
Q ss_pred CCCc
Q 012184 239 TKLA 242 (469)
Q Consensus 239 ~~~~ 242 (469)
.+++
T Consensus 230 ~tG~ 233 (238)
T PF13360_consen 230 KTGK 233 (238)
T ss_dssp TTTE
T ss_pred CCCC
Confidence 8764
No 58
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.24 E-value=0.09 Score=50.95 Aligned_cols=128 Identities=19% Similarity=0.240 Sum_probs=78.5
Q ss_pred ECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCcc----CcEEEE-
Q 012184 61 WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLL----NDVHFL- 135 (469)
Q Consensus 61 ~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~----~~v~~~- 135 (469)
.+++|+..+.. ..+.+||+.|..-...+ .++.+...-.++.++++||++.......... ..++.+
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~ 144 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALV 144 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEec
Confidence 49999999654 12789999999877666 4556666667788899999998764432110 033333
Q ss_pred -E--------CCCCeEEEeeeCCCCCCCCCC-------ceEEEEcCcEEEE-EecCCCCcccCcEEEEECCCCceEeeee
Q 012184 136 -D--------LETMTWDAVEVTQTPPAPRYD-------HSAALHANRYLIV-FGGCSHSIFFNDLHVLDLQTNEWSQPEI 198 (469)
Q Consensus 136 -d--------~~t~~W~~~~~~g~~p~~r~~-------~~~~~~~~~~l~v-~GG~~~~~~~~~i~~~d~~~~~W~~~~~ 198 (469)
+ .....|..+++ +|..+.. .+-+++++..|+| .-|.. .-.|.||..+.+|+.+
T Consensus 145 ~~~~~~~~~~~~~w~W~~LP~---PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~-- 214 (342)
T PF07893_consen 145 YRPPPDDPSPEESWSWRSLPP---PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKH-- 214 (342)
T ss_pred cccccccccCCCcceEEcCCC---CCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeec--
Confidence 3 22346777652 3333221 1223334556666 32211 2489999999999996
Q ss_pred cCCCCCCCcce
Q 012184 199 KGDLVTGRAGH 209 (469)
Q Consensus 199 ~~~~p~~r~~~ 209 (469)
|++..|-.+.
T Consensus 215 -GdW~LPF~G~ 224 (342)
T PF07893_consen 215 -GDWMLPFHGQ 224 (342)
T ss_pred -cceecCcCCc
Confidence 4665554443
No 59
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.14 E-value=0.11 Score=51.54 Aligned_cols=155 Identities=17% Similarity=0.115 Sum_probs=85.5
Q ss_pred eeEEECCEEEEEccccCCCCCcceEEEEECCCCe--EEEeecCC--CCC---CCCcceEEEEECCEEEEEeccCCCCCcc
Q 012184 57 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSG--KVP---VARGGHSVTLVGSRLIIFGGEDRSRKLL 129 (469)
Q Consensus 57 ~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g--~~p---~~r~~~~~~~~~~~lyi~GG~~~~~~~~ 129 (469)
+.++.++.||+.+.. ..+++||..+++ |+.-.... ..+ .++...+.++.++++|+. +. .
T Consensus 64 sPvv~~~~vy~~~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~-~~------~ 129 (394)
T PRK11138 64 HPAVAYNKVYAADRA-------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIG-SE------K 129 (394)
T ss_pred ccEEECCEEEEECCC-------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEE-cC------C
Confidence 446679999998542 248999998776 87543210 000 123334456667888864 22 2
Q ss_pred CcEEEEECCCC--eEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc--eEeeeecCCCCCC
Q 012184 130 NDVHFLDLETM--TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTG 205 (469)
Q Consensus 130 ~~v~~~d~~t~--~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~ 205 (469)
..++.||..|+ .|+.-.. .+.. .+.++. ++.+|+..+ .+.++.||+.+++ |..... .+....
T Consensus 130 g~l~ald~~tG~~~W~~~~~-----~~~~-ssP~v~-~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~-~~~~~~ 195 (394)
T PRK11138 130 GQVYALNAEDGEVAWQTKVA-----GEAL-SRPVVS-DGLVLVHTS------NGMLQALNESDGAVKWTVNLD-VPSLTL 195 (394)
T ss_pred CEEEEEECCCCCCcccccCC-----Ccee-cCCEEE-CCEEEEECC------CCEEEEEEccCCCEeeeecCC-CCcccc
Confidence 35999998876 4865421 1111 112233 666776432 1469999998876 876431 111111
Q ss_pred CcceEEEEECCEEEEEecCCCCCCcceEEEEECCCC--cEEE
Q 012184 206 RAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL--AWSI 245 (469)
Q Consensus 206 r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~--~W~~ 245 (469)
+...+-+..++.+|+..+ ...++.+|+.+. .|..
T Consensus 196 ~~~~sP~v~~~~v~~~~~------~g~v~a~d~~~G~~~W~~ 231 (394)
T PRK11138 196 RGESAPATAFGGAIVGGD------NGRVSAVLMEQGQLIWQQ 231 (394)
T ss_pred cCCCCCEEECCEEEEEcC------CCEEEEEEccCChhhhee
Confidence 222222334566555332 235778888765 4764
No 60
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.00 E-value=0.39 Score=47.29 Aligned_cols=130 Identities=15% Similarity=0.097 Sum_probs=69.9
Q ss_pred eEEEEECCCCe--EEEeecC--CCCCCC---CcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEeeeCCC
Q 012184 80 IVRFIDLETNL--CGVMETS--GKVPVA---RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQT 150 (469)
Q Consensus 80 ~~~~~d~~t~~--W~~~~~~--g~~p~~---r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~~~~g~ 150 (469)
.++.+|+.+++ |+.-... +..... ....+.+..++.+|+.+. ...+++||+.+++ |..-.
T Consensus 201 ~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~-------~g~l~a~d~~tG~~~W~~~~---- 269 (377)
T TIGR03300 201 KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY-------QGRVAALDLRSGRVLWKRDA---- 269 (377)
T ss_pred EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc-------CCEEEEEECCCCcEEEeecc----
Confidence 38899998875 7643211 000000 112233445777777542 2359999998764 75431
Q ss_pred CCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc--eEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCC
Q 012184 151 PPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN 228 (469)
Q Consensus 151 ~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~ 228 (469)
+ . ..+.+ +.++++|+... ...++++|..+++ |.... ...+...+.+..++.+|+...
T Consensus 270 -~-~--~~~p~-~~~~~vyv~~~------~G~l~~~d~~tG~~~W~~~~-----~~~~~~ssp~i~g~~l~~~~~----- 328 (377)
T TIGR03300 270 -S-S--YQGPA-VDDNRLYVTDA------DGVVVALDRRSGSELWKNDE-----LKYRQLTAPAVVGGYLVVGDF----- 328 (377)
T ss_pred -C-C--ccCce-EeCCEEEEECC------CCeEEEEECCCCcEEEcccc-----ccCCccccCEEECCEEEEEeC-----
Confidence 1 1 11222 33677887642 2469999998764 76521 112222233445777776421
Q ss_pred CcceEEEEECCCCc
Q 012184 229 GCQETIVLNMTKLA 242 (469)
Q Consensus 229 ~~~d~~~~d~~~~~ 242 (469)
...++.+|..+.+
T Consensus 329 -~G~l~~~d~~tG~ 341 (377)
T TIGR03300 329 -EGYLHWLSREDGS 341 (377)
T ss_pred -CCEEEEEECCCCC
Confidence 2368888886553
No 61
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.99 E-value=0.016 Score=48.19 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 012184 431 NEVQILRQQKSAFE 444 (469)
Q Consensus 431 ~e~~~~~q~~~~~~ 444 (469)
+.++.+.++..+.+
T Consensus 115 Rkv~~le~~~~~~E 128 (143)
T PF12718_consen 115 RKVKALEQERDQWE 128 (143)
T ss_pred HHHHHHHhhHHHHH
Confidence 33333333333333
No 62
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.90 E-value=0.24 Score=45.51 Aligned_cols=190 Identities=15% Similarity=0.127 Sum_probs=100.2
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME 95 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~ 95 (469)
.++++|+.++.-..+... ...+.++-.-++.+|+.... . +..+|+.+++++.+.
T Consensus 23 ~i~~~~~~~~~~~~~~~~------------------~~~G~~~~~~~g~l~v~~~~---~-----~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 23 RIYRVDPDTGEVEVIDLP------------------GPNGMAFDRPDGRLYVADSG---G-----IAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEEETTTTEEEEEESS------------------SEEEEEEECTTSEEEEEETT---C-----EEEEETTTTEEEEEE
T ss_pred EEEEEECCCCeEEEEecC------------------CCceEEEEccCCEEEEEEcC---c-----eEEEecCCCcEEEEe
Confidence 688888888776665443 12222222237888887532 1 566799999999887
Q ss_pred cC--CCCCCCCcceEEEEECCEEEEEeccCCCCCcc--CcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcC-cEEEE
Q 012184 96 TS--GKVPVARGGHSVTLVGSRLIIFGGEDRSRKLL--NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHAN-RYLIV 170 (469)
Q Consensus 96 ~~--g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~--~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~~l~v 170 (469)
.. +..+..+..-.++.-++.||+---........ ..++++++. .+...+.. .+..| ..++...+ +.||+
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~p---NGi~~s~dg~~lyv 150 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFP---NGIAFSPDGKTLYV 150 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSE---EEEEEETTSSEEEE
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--Ccccc---cceEECCcchheee
Confidence 43 11133444444444467777643221111112 579999998 66665542 11111 23344334 46777
Q ss_pred EecCCCCcccCcEEEEECCCCc--eEeeeecCCCCCCC-cceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEe
Q 012184 171 FGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGR-AGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSIL 246 (469)
Q Consensus 171 ~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r-~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~ 246 (469)
.- ...+.|+.|++.... +.........+... ..-.+++- +++|||..- ....+++||+.-..-..+
T Consensus 151 ~d-----s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-----~~~~I~~~~p~G~~~~~i 220 (246)
T PF08450_consen 151 AD-----SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-----GGGRIVVFDPDGKLLREI 220 (246)
T ss_dssp EE-----TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-----TTTEEEEEETTSCEEEEE
T ss_pred cc-----cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-----CCCEEEEECCCccEEEEE
Confidence 43 233669999986433 44322211222222 12234433 578888722 124799999996555554
Q ss_pred c
Q 012184 247 T 247 (469)
Q Consensus 247 ~ 247 (469)
.
T Consensus 221 ~ 221 (246)
T PF08450_consen 221 E 221 (246)
T ss_dssp E
T ss_pred c
Confidence 3
No 63
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.88 E-value=0.04 Score=51.41 Aligned_cols=121 Identities=17% Similarity=0.247 Sum_probs=72.3
Q ss_pred EEecc-CCCCC-ccCcEEEEECCCCeEEEeeeCCCCCCCCCC--ceEEEEcCcEEEEEecCCCCc-ccCcEEEEECCCCc
Q 012184 118 IFGGE-DRSRK-LLNDVHFLDLETMTWDAVEVTQTPPAPRYD--HSAALHANRYLIVFGGCSHSI-FFNDLHVLDLQTNE 192 (469)
Q Consensus 118 i~GG~-~~~~~-~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~--~~~~~~~~~~l~v~GG~~~~~-~~~~i~~~d~~~~~ 192 (469)
++||. ...+. .++.+-.||+.+.+|..+.. - ..+ .++...+++.||+.|-..... ....+-.||+++.+
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~---~---i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGN---G---ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCC---C---ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 34553 33332 47789999999999988742 1 222 233334577788877544333 45668999999999
Q ss_pred eEeeeec--CCCCCCCcceEEEEEC-CEEEEEecCCCCCCcceEEEEECCCCcEEEecc
Q 012184 193 WSQPEIK--GDLVTGRAGHAGITID-ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 248 (469)
Q Consensus 193 W~~~~~~--~~~p~~r~~~~~~~~~-~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~ 248 (469)
|+.+... ...|.|.........+ +.+++.|.. .....-+..| ...+|..+..
T Consensus 76 w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~--~~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 76 WSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS--ANGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred eeecCCcccccCCCcEEEEEeeccCCceEEEecee--cCCCceEEEE--cCCceEeccc
Confidence 9887642 2345554322222223 356666654 2223445566 5668888765
No 64
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.72 E-value=0.7 Score=45.51 Aligned_cols=209 Identities=15% Similarity=0.100 Sum_probs=106.8
Q ss_pred ceEEEEccCCc--eeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe--E
Q 012184 16 VVMVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--C 91 (469)
Q Consensus 16 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W 91 (469)
.++.||+.+++ |+.-... +...+.++.++.+|+.+. . ..++.||..+++ |
T Consensus 76 ~v~a~d~~tG~~~W~~~~~~-------------------~~~~~p~v~~~~v~v~~~-~------g~l~ald~~tG~~~W 129 (377)
T TIGR03300 76 TVVALDAETGKRLWRVDLDE-------------------RLSGGVGADGGLVFVGTE-K------GEVIALDAEDGKELW 129 (377)
T ss_pred eEEEEEccCCcEeeeecCCC-------------------CcccceEEcCCEEEEEcC-C------CEEEEEECCCCcEee
Confidence 68999988765 7643332 111223445777776432 2 249999998776 8
Q ss_pred EEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEeeeCCCCCCCCCCceEEEEcCcEEE
Q 012184 92 GVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRYLI 169 (469)
Q Consensus 92 ~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~l~ 169 (469)
+.... + . ...+.+..++.+|+..+ ...++.+|+.+++ |+..... +....+...+.+.. ++.+|
T Consensus 130 ~~~~~-~----~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~-~~~~~~~~~sp~~~-~~~v~ 194 (377)
T TIGR03300 130 RAKLS-S----E-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVT-PALTLRGSASPVIA-DGGVL 194 (377)
T ss_pred eeccC-c----e-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCC-CceeecCCCCCEEE-CCEEE
Confidence 75431 1 1 11223345677776432 2348999998764 7654311 10011222233444 55444
Q ss_pred EEecCCCCcccCcEEEEECCCCc--eEeeeecC--CCCCCC---cceEEEEECCEEEEEecCCCCCCcceEEEEECCCC-
Q 012184 170 VFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKG--DLVTGR---AGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL- 241 (469)
Q Consensus 170 v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~--~~p~~r---~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~- 241 (469)
+|..+ ..++.+|+.+++ |+.....+ .....| ...+.+..++.+|+... ...++.||+.+.
T Consensus 195 -~~~~~-----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~------~g~l~a~d~~tG~ 262 (377)
T TIGR03300 195 -VGFAG-----GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY------QGRVAALDLRSGR 262 (377)
T ss_pred -EECCC-----CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc------CCEEEEEECCCCc
Confidence 44322 368899988764 76422100 000001 11223345677777543 136889998764
Q ss_pred -cEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184 242 -AWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 242 -~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~ 295 (469)
.|..- ... ..+.... ++.+|+... ...++.+|..+.
T Consensus 263 ~~W~~~--~~~-------~~~p~~~----~~~vyv~~~-----~G~l~~~d~~tG 299 (377)
T TIGR03300 263 VLWKRD--ASS-------YQGPAVD----DNRLYVTDA-----DGVVVALDRRSG 299 (377)
T ss_pred EEEeec--cCC-------ccCceEe----CCEEEEECC-----CCeEEEEECCCC
Confidence 46542 111 0111122 567776542 235888887654
No 65
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.71 E-value=0.19 Score=48.70 Aligned_cols=151 Identities=16% Similarity=0.176 Sum_probs=84.7
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecC--CCCCCCCcceEEEEECCE-EEEEeccCCCCCccCcEEEEECC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETS--GKVPVARGGHSVTLVGSR-LIIFGGEDRSRKLLNDVHFLDLE 138 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~--g~~p~~r~~~~~~~~~~~-lyi~GG~~~~~~~~~~v~~~d~~ 138 (469)
.--|++.+|.+..- .+|..|-.++. .+... -..|... ...+. ++. ..+++|.. .-+|.||+.
T Consensus 224 ~~plllvaG~d~~l----rifqvDGk~N~--~lqS~~l~~fPi~~--a~f~p-~G~~~i~~s~rr------ky~ysyDle 288 (514)
T KOG2055|consen 224 TAPLLLVAGLDGTL----RIFQVDGKVNP--KLQSIHLEKFPIQK--AEFAP-NGHSVIFTSGRR------KYLYSYDLE 288 (514)
T ss_pred CCceEEEecCCCcE----EEEEecCccCh--hheeeeeccCccce--eeecC-CCceEEEecccc------eEEEEeecc
Confidence 55688888876532 26666666655 22210 0122221 11111 344 66666643 348999999
Q ss_pred CCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEE
Q 012184 139 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENW 218 (469)
Q Consensus 139 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l 218 (469)
+.+-+++.+...++. ++.+...+-.++.++++-|..+ -|+++...|+.|..-- .++.....++....+..|
T Consensus 289 ~ak~~k~~~~~g~e~-~~~e~FeVShd~~fia~~G~~G-----~I~lLhakT~eli~s~---KieG~v~~~~fsSdsk~l 359 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEE-KSMERFEVSHDSNFIAIAGNNG-----HIHLLHAKTKELITSF---KIEGVVSDFTFSSDSKEL 359 (514)
T ss_pred ccccccccCCCCccc-chhheeEecCCCCeEEEcccCc-----eEEeehhhhhhhhhee---eeccEEeeEEEecCCcEE
Confidence 999998876555542 2222222222444666666543 4788888888886411 122222233333334567
Q ss_pred EEEecCCCCCCcceEEEEECCCCc
Q 012184 219 YIVGGGDNNNGCQETIVLNMTKLA 242 (469)
Q Consensus 219 ~v~GG~~~~~~~~d~~~~d~~~~~ 242 (469)
+++||. ..+|++|+.++.
T Consensus 360 ~~~~~~------GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 360 LASGGT------GEVYVWNLRQNS 377 (514)
T ss_pred EEEcCC------ceEEEEecCCcc
Confidence 788773 489999998874
No 66
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.68 E-value=0.14 Score=46.88 Aligned_cols=154 Identities=18% Similarity=0.118 Sum_probs=93.6
Q ss_pred ECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCC
Q 012184 61 WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM 140 (469)
Q Consensus 61 ~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~ 140 (469)
.++.+|..-|..+. +.+..+|+.|++-.... ++|..-.+=+++.++++||.+- .-.+..++||+.+.
T Consensus 54 ~~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLT------Wk~~~~f~yd~~tl 120 (264)
T PF05096_consen 54 DDGTLYESTGLYGQ----SSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLT------WKEGTGFVYDPNTL 120 (264)
T ss_dssp ETTEEEEEECSTTE----EEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEE------SSSSEEEEEETTTT
T ss_pred CCCEEEEeCCCCCc----EEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEE------ecCCeEEEEccccc
Confidence 46788887776543 45999999999876655 6788888999999999999983 12456899999875
Q ss_pred eEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceE-eeeec-CCCCCCCcceEEEEECCEE
Q 012184 141 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS-QPEIK-GDLVTGRAGHAGITIDENW 218 (469)
Q Consensus 141 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~-~~~~~-~~~p~~r~~~~~~~~~~~l 218 (469)
+= +. ..+.+.-+-.++.. +..||+.-|. +.++.+||.+.+=. .+.++ ...|..+- -.+-.+++.|
T Consensus 121 ~~--~~---~~~y~~EGWGLt~d-g~~Li~SDGS------~~L~~~dP~~f~~~~~i~V~~~g~pv~~L-NELE~i~G~I 187 (264)
T PF05096_consen 121 KK--IG---TFPYPGEGWGLTSD-GKRLIMSDGS------SRLYFLDPETFKEVRTIQVTDNGRPVSNL-NELEYINGKI 187 (264)
T ss_dssp EE--EE---EEE-SSS--EEEEC-SSCEEEE-SS------SEEEEE-TTT-SEEEEEE-EETTEE---E-EEEEEETTEE
T ss_pred eE--EE---EEecCCcceEEEcC-CCEEEEECCc------cceEEECCcccceEEEEEEEECCEECCCc-EeEEEEcCEE
Confidence 43 22 23445677788865 5568887763 67999999865432 22222 12233322 2445556665
Q ss_pred EEEecCCCCCCcceEEEEECCCCcEEE
Q 012184 219 YIVGGGDNNNGCQETIVLNMTKLAWSI 245 (469)
Q Consensus 219 ~v~GG~~~~~~~~d~~~~d~~~~~W~~ 245 (469)
|. +--..+.|.+.|+.++.-..
T Consensus 188 yA-----NVW~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 188 YA-----NVWQTDRIVRIDPETGKVVG 209 (264)
T ss_dssp EE-----EETTSSEEEEEETTT-BEEE
T ss_pred EE-----EeCCCCeEEEEeCCCCeEEE
Confidence 53 22235678999999987544
No 67
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.66 E-value=0.064 Score=51.79 Aligned_cols=110 Identities=19% Similarity=0.206 Sum_probs=66.2
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT 141 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~ 141 (469)
|....+++|+.. -+|.||+.+.+-.++....-++..-...--+...+.++++-|..+ -|+++...|+.
T Consensus 269 G~~~i~~s~rrk------y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G------~I~lLhakT~e 336 (514)
T KOG2055|consen 269 GHSVIFTSGRRK------YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG------HIHLLHAKTKE 336 (514)
T ss_pred CceEEEecccce------EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCc------eEEeehhhhhh
Confidence 443777777532 389999999999888743333322222223333444555555433 38888888888
Q ss_pred EEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCce
Q 012184 142 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW 193 (469)
Q Consensus 142 W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W 193 (469)
|..-- .++-....++.... ...|++.||. ..||++|+.++..
T Consensus 337 li~s~---KieG~v~~~~fsSd-sk~l~~~~~~------GeV~v~nl~~~~~ 378 (514)
T KOG2055|consen 337 LITSF---KIEGVVSDFTFSSD-SKELLASGGT------GEVYVWNLRQNSC 378 (514)
T ss_pred hhhee---eeccEEeeEEEecC-CcEEEEEcCC------ceEEEEecCCcce
Confidence 85321 22333334444433 4568888875 3799999988753
No 68
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=96.52 E-value=0.58 Score=42.99 Aligned_cols=189 Identities=15% Similarity=0.062 Sum_probs=104.7
Q ss_pred CCEEEEEccccCCCCCcceEEEEEC-----CCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEE
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDL-----ETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLD 136 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~-----~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d 136 (469)
.++||++.|.... .++.|.. ..+.....- .+|.+-.|.+.+++++.+|.--. .++.|.+||
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~---~Lp~~~~GtG~vVYngslYY~~~------~s~~Ivkyd 95 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTY---KLPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYD 95 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEE---EEeceeccCCeEEECCcEEEEec------CCceEEEEE
Confidence 5678888776543 3555532 222333332 46677778888889999998633 377899999
Q ss_pred CCCCeEE-EeeeCCCC-----CCCCC---CceEEEEcCcEEEEEecCCCCcccCcEEEEECCCC----ceEeeeecCCCC
Q 012184 137 LETMTWD-AVEVTQTP-----PAPRY---DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN----EWSQPEIKGDLV 203 (469)
Q Consensus 137 ~~t~~W~-~~~~~g~~-----p~~r~---~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~----~W~~~~~~~~~p 203 (469)
+.+..-. .....+.. |.... ..-.++..++ |+|+=....+...--+-.+|+.+. +|.. ..+
T Consensus 96 L~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~G-LWvIYat~~~~g~ivvskld~~tL~v~~tw~T-----~~~ 169 (250)
T PF02191_consen 96 LTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENG-LWVIYATEDNNGNIVVSKLDPETLSVEQTWNT-----SYP 169 (250)
T ss_pred CcCCcEEEEEECCccccccccceecCCCceEEEEEcCCC-EEEEEecCCCCCcEEEEeeCcccCceEEEEEe-----ccC
Confidence 9998765 33221111 11111 1233444345 777654433221123455666654 3553 334
Q ss_pred CCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcC-CcEEEEEe
Q 012184 204 TGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFG 277 (469)
Q Consensus 204 ~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~G 277 (469)
.+..+ .+.++-+.||++-..+... ..-.+.||+.++.=..+ .++-+. .......+..++ +..||+.-
T Consensus 170 k~~~~-naFmvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~~-~i~f~~----~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 170 KRSAG-NAFMVCGVLYATDSYDTRD-TEIFYAFDTYTGKEEDV-SIPFPN----PYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred chhhc-ceeeEeeEEEEEEECCCCC-cEEEEEEECCCCceece-eeeecc----ccCceEeeeECCCCCeEEEEE
Confidence 44444 3455667999987654433 33468999988765432 222222 122344455566 67888764
No 69
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=0.05 Score=55.77 Aligned_cols=31 Identities=16% Similarity=0.197 Sum_probs=16.9
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhh
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDE 383 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 383 (469)
+.+|..+++.+++.....+.+.++.+++-++
T Consensus 326 qaELerRRq~leeqqqreree~eqkEreE~e 356 (1118)
T KOG1029|consen 326 QAELERRRQALEEQQQREREEVEQKEREEEE 356 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666665555555555555444333
No 70
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.44 E-value=0.024 Score=59.68 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 012184 428 TIENEVQILRQQKSAFEQE 446 (469)
Q Consensus 428 ~~e~e~~~~~q~~~~~~~~ 446 (469)
++|.|+.+++.++.+.|++
T Consensus 549 ~lE~E~~~lr~elk~kee~ 567 (697)
T PF09726_consen 549 QLESELKKLRRELKQKEEQ 567 (697)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 71
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.38 E-value=0.048 Score=45.33 Aligned_cols=16 Identities=13% Similarity=0.347 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHHHH
Q 012184 428 TIENEVQILRQQKSAF 443 (469)
Q Consensus 428 ~~e~e~~~~~q~~~~~ 443 (469)
.+.+.++.+.+++++.
T Consensus 77 ~l~rriq~LEeele~a 92 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEA 92 (143)
T ss_pred HHHhhHHHHHHHHHHH
Confidence 3444444444444433
No 72
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.33 E-value=0.21 Score=48.44 Aligned_cols=31 Identities=13% Similarity=0.301 Sum_probs=19.8
Q ss_pred CeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe
Q 012184 55 DHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL 90 (469)
Q Consensus 55 ~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~ 90 (469)
-++.+..+.-.|++||.-... +|.+.+.|+.
T Consensus 84 v~al~s~n~G~~l~ag~i~g~-----lYlWelssG~ 114 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGN-----LYLWELSSGI 114 (476)
T ss_pred eeeeecCCCceEEEeecccCc-----EEEEEecccc
Confidence 345555566678887743333 7887777775
No 73
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.27 E-value=1.7 Score=44.85 Aligned_cols=124 Identities=12% Similarity=0.022 Sum_probs=67.0
Q ss_pred eeEEECCEEEEEccccCCCCCcceEEEEECCCCe--EEEeecCC-C-CC---CCCcceEEEEECCEEEEEeccCCCCCcc
Q 012184 57 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSG-K-VP---VARGGHSVTLVGSRLIIFGGEDRSRKLL 129 (469)
Q Consensus 57 ~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g-~-~p---~~r~~~~~~~~~~~lyi~GG~~~~~~~~ 129 (469)
+-+++++.||+.... ..++.+|..|++ |+.-.... . .+ ......+.+..+++||+- .. .
T Consensus 64 tPvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~-t~------d 129 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFG-TL------D 129 (527)
T ss_pred CCEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEE-cC------C
Confidence 445679999986432 239999999876 87644110 0 01 011123345567777763 21 3
Q ss_pred CcEEEEECCCCe--EEEeeeCCCCCCCC-CCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc--eEeee
Q 012184 130 NDVHFLDLETMT--WDAVEVTQTPPAPR-YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPE 197 (469)
Q Consensus 130 ~~v~~~d~~t~~--W~~~~~~g~~p~~r-~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~ 197 (469)
..++.+|..|++ |+.-. +...... ...+-++. ++.+|+-...........++.||.++++ |..-.
T Consensus 130 g~l~ALDa~TGk~~W~~~~--~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 130 ARLVALDAKTGKVVWSKKN--GDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEECCCCCEEeeccc--ccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 359999998875 76532 1111111 11122334 6656553222112234579999998876 87543
No 74
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=96.23 E-value=1.5 Score=43.78 Aligned_cols=147 Identities=13% Similarity=0.038 Sum_probs=77.8
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME 95 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~ 95 (469)
.++++|+.++.-..+.... ......+....+..|++...... ...+|.+|+.++....+.
T Consensus 215 ~i~v~d~~~g~~~~~~~~~----------------~~~~~~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~ 274 (417)
T TIGR02800 215 EIYVQDLATGQREKVASFP----------------GMNGAPAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLT 274 (417)
T ss_pred EEEEEECCCCCEEEeecCC----------------CCccceEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECC
Confidence 6888888887665554431 11112222222455666533221 235999999998877775
Q ss_pred cCCCCCCCCcceEEEEECC-EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecC
Q 012184 96 TSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC 174 (469)
Q Consensus 96 ~~g~~p~~r~~~~~~~~~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~ 174 (469)
.. +....... ..-++ +|++...... ...+|++|+.+..+..+...+ ..........++..+++...
T Consensus 275 ~~---~~~~~~~~-~s~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~ 341 (417)
T TIGR02800 275 NG---PGIDTEPS-WSPDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVHR 341 (417)
T ss_pred CC---CCCCCCEE-ECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEEc
Confidence 32 11111111 11234 4554432221 347999999998887765322 12222333334555555544
Q ss_pred CCCcccCcEEEEECCCCceEeee
Q 012184 175 SHSIFFNDLHVLDLQTNEWSQPE 197 (469)
Q Consensus 175 ~~~~~~~~i~~~d~~~~~W~~~~ 197 (469)
.. ....++++|+.+..+..+.
T Consensus 342 ~~--~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 342 EG--GGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred cC--CceEEEEEeCCCCCeEEcc
Confidence 32 2347999999887666553
No 75
>PRK04922 tolB translocation protein TolB; Provisional
Probab=96.16 E-value=1.7 Score=43.75 Aligned_cols=184 Identities=15% Similarity=0.089 Sum_probs=92.6
Q ss_pred ceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCc
Q 012184 79 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH 158 (469)
Q Consensus 79 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~ 158 (469)
..++.+|+.++.-..+. ..+..........-+.+|++....++ ..+++++|+.++....+... + . ...
T Consensus 228 ~~l~~~dl~~g~~~~l~---~~~g~~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~---~-~-~~~ 295 (433)
T PRK04922 228 SAIYVQDLATGQRELVA---SFRGINGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNH---F-G-IDT 295 (433)
T ss_pred cEEEEEECCCCCEEEec---cCCCCccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccC---C-C-Ccc
Confidence 45999999998877665 22211111111111335554432221 34799999999887665421 1 1 111
Q ss_pred eEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-C-CEEEEEecCCCCCCcceEEEE
Q 012184 159 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-D-ENWYIVGGGDNNNGCQETIVL 236 (469)
Q Consensus 159 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~-~~l~v~GG~~~~~~~~d~~~~ 236 (469)
......|+.-++|..... ....+|++|+.+.....+...+ ......... + +.|++..+. + ....++++
T Consensus 296 ~~~~spDG~~l~f~sd~~--g~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~~-~--~~~~I~v~ 365 (433)
T PRK04922 296 EPTWAPDGKSIYFTSDRG--GRPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHGS-G--GQYRIAVM 365 (433)
T ss_pred ceEECCCCCEEEEEECCC--CCceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEECC-C--CceeEEEE
Confidence 222223443344432111 1257999999888887764221 122222222 3 445554332 1 22478999
Q ss_pred ECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184 237 NMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 237 d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~ 295 (469)
|+.+.....+..-... .+ ..+ .+++..+++....+ ....++.++++..
T Consensus 366 d~~~g~~~~Lt~~~~~-------~~-p~~--spdG~~i~~~s~~~-g~~~L~~~~~~g~ 413 (433)
T PRK04922 366 DLSTGSVRTLTPGSLD-------ES-PSF--APNGSMVLYATREG-GRGVLAAVSTDGR 413 (433)
T ss_pred ECCCCCeEECCCCCCC-------CC-ceE--CCCCCEEEEEEecC-CceEEEEEECCCC
Confidence 9988887766432110 11 122 23445555544332 2456888888543
No 76
>PRK00178 tolB translocation protein TolB; Provisional
Probab=96.11 E-value=1.8 Score=43.53 Aligned_cols=147 Identities=14% Similarity=0.113 Sum_probs=77.0
Q ss_pred ceEEEEECCCCeEEEeecCCCCCCCCcceEEEEEC-CEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCC
Q 012184 79 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD 157 (469)
Q Consensus 79 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~ 157 (469)
..+|++|+.++.-..+.. .+.. .......-+ .+|++....++ ..++|++|+.+.....+... + .. .
T Consensus 223 ~~l~~~~l~~g~~~~l~~---~~g~-~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~-~~-~ 289 (430)
T PRK00178 223 PRIFVQNLDTGRREQITN---FEGL-NGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNH---P-AI-D 289 (430)
T ss_pred CEEEEEECCCCCEEEccC---CCCC-cCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccC---C-CC-c
Confidence 359999999998777652 1211 111111113 34554322211 35799999999988776421 1 11 1
Q ss_pred ceEEEEcC-cEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECC-EEEEEecCCCCCCcceEEE
Q 012184 158 HSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE-NWYIVGGGDNNNGCQETIV 235 (469)
Q Consensus 158 ~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~-~l~v~GG~~~~~~~~d~~~ 235 (469)
.......| +.|++.....+ ...+|.+|+.++.+..+...+ .........-++ .+++.....+ ..++++
T Consensus 290 ~~~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~----~~~~~~~~Spdg~~i~~~~~~~~---~~~l~~ 359 (430)
T PRK00178 290 TEPFWGKDGRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG----NYNARPRLSADGKTLVMVHRQDG---NFHVAA 359 (430)
T ss_pred CCeEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC----CCccceEECCCCCEEEEEEccCC---ceEEEE
Confidence 11222223 44554432221 257999999988887764211 111111112233 4444432211 346999
Q ss_pred EECCCCcEEEecc
Q 012184 236 LNMTKLAWSILTS 248 (469)
Q Consensus 236 ~d~~~~~W~~~~~ 248 (469)
+|+.+...+.+..
T Consensus 360 ~dl~tg~~~~lt~ 372 (430)
T PRK00178 360 QDLQRGSVRILTD 372 (430)
T ss_pred EECCCCCEEEccC
Confidence 9999988877754
No 77
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.11 E-value=1.2 Score=41.61 Aligned_cols=148 Identities=22% Similarity=0.164 Sum_probs=70.9
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-C-CEEEEEeccCCCCCccCcEEEEECCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-G-SRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~-~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
+..+|+.++. .+.+..||+.++........+ +.+ ..++.. + +.+|+.++. .+.+.+||+.+
T Consensus 42 g~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~--~~~---~~~~~~~~g~~l~~~~~~------~~~l~~~d~~~ 104 (300)
T TIGR03866 42 GKLLYVCASD------SDTIQVIDLATGEVIGTLPSG--PDP---ELFALHPNGKILYIANED------DNLVTVIDIET 104 (300)
T ss_pred CCEEEEEECC------CCeEEEEECCCCcEEEeccCC--CCc---cEEEECCCCCEEEEEcCC------CCeEEEEECCC
Confidence 4456777642 234889999988765432111 111 122222 3 356655432 23589999987
Q ss_pred CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEE
Q 012184 140 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWY 219 (469)
Q Consensus 140 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~ 219 (469)
..-.... +.....+.+....++.+++++..+. +.++.||+.+..-......+. +..+.+..-++..+
T Consensus 105 ~~~~~~~-----~~~~~~~~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l 171 (300)
T TIGR03866 105 RKVLAEI-----PVGVEPEGMAVSPDGKIVVNTSETT----NMAHFIDTKTYEIVDNVLVDQ----RPRFAEFTADGKEL 171 (300)
T ss_pred CeEEeEe-----eCCCCcceEEECCCCCEEEEEecCC----CeEEEEeCCCCeEEEEEEcCC----CccEEEECCCCCEE
Confidence 6532211 1111123344444566666664322 346677876654322111111 11122222244545
Q ss_pred EEecCCCCCCcceEEEEECCCCcE
Q 012184 220 IVGGGDNNNGCQETIVLNMTKLAW 243 (469)
Q Consensus 220 v~GG~~~~~~~~d~~~~d~~~~~W 243 (469)
++++.. ...+.+||+.+...
T Consensus 172 ~~~~~~----~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 172 WVSSEI----GGTVSVIDVATRKV 191 (300)
T ss_pred EEEcCC----CCEEEEEEcCccee
Confidence 454421 13588899887643
No 78
>PRK04792 tolB translocation protein TolB; Provisional
Probab=96.10 E-value=1.9 Score=43.69 Aligned_cols=149 Identities=15% Similarity=0.135 Sum_probs=78.6
Q ss_pred ceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCc
Q 012184 79 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH 158 (469)
Q Consensus 79 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~ 158 (469)
..+|.+|+.++.-..+. ..+..........-+..|++....+. ..++|++|+.++..+.+.... .....
T Consensus 242 ~~L~~~dl~tg~~~~lt---~~~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~----~~~~~ 310 (448)
T PRK04792 242 AEIFVQDIYTQVREKVT---SFPGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHR----AIDTE 310 (448)
T ss_pred cEEEEEECCCCCeEEec---CCCCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCC----CCccc
Confidence 45999999988776665 22211111111112345665533221 357999999999887765311 11111
Q ss_pred eEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEEC
Q 012184 159 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNM 238 (469)
Q Consensus 159 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~ 238 (469)
....-++++|++...... ...+|++|+.++++..+...+.. .......-+++.+++.+.. .....++.+|+
T Consensus 311 p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g~~----~~~~~~SpDG~~l~~~~~~--~g~~~I~~~dl 381 (448)
T PRK04792 311 PSWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRLTFEGEQ----NLGGSITPDGRSMIMVNRT--NGKFNIARQDL 381 (448)
T ss_pred eEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEEecCCCC----CcCeeECCCCCEEEEEEec--CCceEEEEEEC
Confidence 112222344544432222 25799999999988877422111 1111122244444443322 12357999999
Q ss_pred CCCcEEEec
Q 012184 239 TKLAWSILT 247 (469)
Q Consensus 239 ~~~~W~~~~ 247 (469)
.+.....+.
T Consensus 382 ~~g~~~~lt 390 (448)
T PRK04792 382 ETGAMQVLT 390 (448)
T ss_pred CCCCeEEcc
Confidence 988877664
No 79
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=96.03 E-value=0.67 Score=40.91 Aligned_cols=156 Identities=11% Similarity=0.100 Sum_probs=78.9
Q ss_pred eeeEEECCEEEEEccccCCCCCcceEEEEECCCCeE--EEeecCC-CCCCCCcceEEEEEC-CEEEEEeccCCCCCccCc
Q 012184 56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLC--GVMETSG-KVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLND 131 (469)
Q Consensus 56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W--~~~~~~g-~~p~~r~~~~~~~~~-~~lyi~GG~~~~~~~~~~ 131 (469)
-+++...+.+|+|-|. .+|+++...... ..+...- ..| .....+...-. +++|+|-|. .
T Consensus 10 DA~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p-~~IDAa~~~~~~~~~yfFkg~--------~ 72 (194)
T cd00094 10 DAVTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLP-SPVDAAFERPDTGKIYFFKGD--------K 72 (194)
T ss_pred CeEEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCC-CCccEEEEECCCCEEEEECCC--------E
Confidence 3455557999999663 278887652221 1221100 112 22222222223 789999543 4
Q ss_pred EEEEECCCCeEEEeee---CCCCCCCCCCceEEEEc-CcEEEEEecCCCCcccCcEEEEECCCCceEee--eec-CCCC-
Q 012184 132 VHFLDLETMTWDAVEV---TQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP--EIK-GDLV- 203 (469)
Q Consensus 132 v~~~d~~t~~W~~~~~---~g~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~--~~~-~~~p- 203 (469)
.|+|+..+..+..+.. .+-++.+..--++.... ++++|+|.| +..|+||..+.+...- ... ...+
T Consensus 73 yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g 145 (194)
T cd00094 73 YWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPG 145 (194)
T ss_pred EEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCC
Confidence 7778765422211111 01111112122333343 678999988 5688998766554311 000 0111
Q ss_pred CCCcceEEEEEC-CEEEEEecCCCCCCcceEEEEECCCCc
Q 012184 204 TGRAGHAGITID-ENWYIVGGGDNNNGCQETIVLNMTKLA 242 (469)
Q Consensus 204 ~~r~~~~~~~~~-~~l~v~GG~~~~~~~~d~~~~d~~~~~ 242 (469)
.+..-.++...+ +++|+|-| +..|+||..+..
T Consensus 146 ~p~~idaa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 146 VPDKVDAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred cCCCcceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 222222333344 88999977 378999988765
No 80
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.00 E-value=0.11 Score=52.31 Aligned_cols=45 Identities=29% Similarity=0.429 Sum_probs=18.9
Q ss_pred hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012184 373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIA 417 (469)
Q Consensus 373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~ 417 (469)
+..+|+.+.+++....+.+..+...+..++.+.+.++.+++..+.
T Consensus 186 e~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~ 230 (546)
T PF07888_consen 186 EMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIK 230 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444444444444444444444444443
No 81
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.89 E-value=2.2 Score=43.20 Aligned_cols=153 Identities=10% Similarity=0.051 Sum_probs=77.2
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECC-EEEEEeccCCCCCccCcEEEEECCCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETM 140 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyi~GG~~~~~~~~~~v~~~d~~t~ 140 (469)
+..|++.....+ ...+|.+|+.++....+... ...... ..-.-++ .|++..... ....+|++|+.++
T Consensus 273 G~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~---~~~~~~-p~wSpDG~~I~f~s~~~----g~~~Iy~~dl~~g 340 (448)
T PRK04792 273 GKKLALVLSKDG----QPEIYVVDIATKALTRITRH---RAIDTE-PSWHPDGKSLIFTSERG----GKPQIYRVNLASG 340 (448)
T ss_pred CCEEEEEEeCCC----CeEEEEEECCCCCeEECccC---CCCccc-eEECCCCCEEEEEECCC----CCceEEEEECCCC
Confidence 555666533221 24699999999988877632 111111 1111233 455443222 1357999999999
Q ss_pred eEEEeeeCCCCCCCCCCceEEEEcC-cEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEE
Q 012184 141 TWDAVEVTQTPPAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWY 219 (469)
Q Consensus 141 ~W~~~~~~g~~p~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~ 219 (469)
++..+...+.. ........| ++|++.+ .... ...++++|+.+.....+... .... ..+.. -++..+
T Consensus 341 ~~~~Lt~~g~~-----~~~~~~SpDG~~l~~~~-~~~g--~~~I~~~dl~~g~~~~lt~~---~~d~-~ps~s-pdG~~I 407 (448)
T PRK04792 341 KVSRLTFEGEQ-----NLGGSITPDGRSMIMVN-RTNG--KFNIARQDLETGAMQVLTST---RLDE-SPSVA-PNGTMV 407 (448)
T ss_pred CEEEEecCCCC-----CcCeeECCCCCEEEEEE-ecCC--ceEEEEEECCCCCeEEccCC---CCCC-CceEC-CCCCEE
Confidence 98887532211 111222224 4455443 3221 24689999998887765421 1111 11222 244444
Q ss_pred EEecCCCCCCcceEEEEECCCC
Q 012184 220 IVGGGDNNNGCQETIVLNMTKL 241 (469)
Q Consensus 220 v~GG~~~~~~~~d~~~~d~~~~ 241 (469)
++....+ ....++++|....
T Consensus 408 ~~~~~~~--g~~~l~~~~~~G~ 427 (448)
T PRK04792 408 IYSTTYQ--GKQVLAAVSIDGR 427 (448)
T ss_pred EEEEecC--CceEEEEEECCCC
Confidence 4433221 2346788887433
No 82
>PRK04043 tolB translocation protein TolB; Provisional
Probab=95.86 E-value=2.3 Score=42.61 Aligned_cols=192 Identities=9% Similarity=0.017 Sum_probs=101.4
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcC-eeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSD-HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 94 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~-~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~ 94 (469)
.++++|+.+++=+.+.... .... ......+.+|++.-...+ ..++|.+|..++.++++
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~-----------------g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~L 272 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQ-----------------GMLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQI 272 (419)
T ss_pred EEEEEECCCCcEEEEecCC-----------------CcEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEc
Confidence 6888888777666655431 1111 111122445655533221 34699999999999888
Q ss_pred ecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecC
Q 012184 95 ETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC 174 (469)
Q Consensus 95 ~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~ 174 (469)
.. .+..-.......-+.+||+.-... -...+|++|+.++..+.+...|. ... ...-++++|.+....
T Consensus 273 T~---~~~~d~~p~~SPDG~~I~F~Sdr~----g~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 273 TN---YPGIDVNGNFVEDDKRIVFVSDRL----GYPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSSRE 339 (419)
T ss_pred cc---CCCccCccEECCCCCEEEEEECCC----CCceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEEcC
Confidence 62 221111111111234677664332 24579999999999877764322 222 222223444444332
Q ss_pred CCCc---ccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEecc
Q 012184 175 SHSI---FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 248 (469)
Q Consensus 175 ~~~~---~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~ 248 (469)
.... ...+++++|+.++.+..+...+ ...+-...-+++.++|-... +....++.+++..+.=..++.
T Consensus 340 ~~~~~~~~~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~--~~~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 340 TNNEFGKNTFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYL--GNQSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred CCcccCCCCcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEcc--CCcEEEEEEecCCCeeEEeec
Confidence 2111 2358999999999988875321 11111111244444443222 234578888887765455543
No 83
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.85 E-value=2.4 Score=42.77 Aligned_cols=188 Identities=16% Similarity=0.079 Sum_probs=90.9
Q ss_pred ceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCc
Q 012184 79 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH 158 (469)
Q Consensus 79 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~ 158 (469)
..++.+|+.++....+. ..+..........-+..|++....+. ..++|++|+.+.....+... +. .. .
T Consensus 226 ~~i~~~dl~~g~~~~l~---~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~---~~-~~-~ 293 (435)
T PRK05137 226 PRVYLLDLETGQRELVG---NFPGMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDS---PA-ID-T 293 (435)
T ss_pred CEEEEEECCCCcEEEee---cCCCcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccCC---CC-cc-C
Confidence 45999999999887776 22222111111112334554432221 45799999998887666421 11 11 1
Q ss_pred eEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECC-EEEEEecCCCCCCcceEEEEE
Q 012184 159 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE-NWYIVGGGDNNNGCQETIVLN 237 (469)
Q Consensus 159 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~-~l~v~GG~~~~~~~~d~~~~d 237 (469)
......|+.-++|..... ....+|++|+.+.....+... ..+.......-++ .|++... .. ....++++|
T Consensus 294 ~~~~spDG~~i~f~s~~~--g~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~-~~--~~~~i~~~d 364 (435)
T PRK05137 294 SPSYSPDGSQIVFESDRS--GSPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTKQ-GG--GQFSIGVMK 364 (435)
T ss_pred ceeEcCCCCEEEEEECCC--CCCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEEc-CC--CceEEEEEE
Confidence 112222443333432211 125799999988777666421 1111111111234 4444332 11 134788999
Q ss_pred CCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEecc-CCCC-CceEEEEECCCCCC
Q 012184 238 MTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGY-NGKY-NNEVFVMRLKPRDI 297 (469)
Q Consensus 238 ~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~-~~~~-~~~~~~~d~~~~~w 297 (469)
+.......+... .. .....+. +++..+++-.. .+.. ...+|.+|++...-
T Consensus 365 ~~~~~~~~lt~~-~~-------~~~p~~s--pDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 365 PDGSGERILTSG-FL-------VEGPTWA--PNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred CCCCceEeccCC-CC-------CCCCeEC--CCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 877665554321 10 1111222 23344444332 2221 25799999866533
No 84
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.81 E-value=0.2 Score=44.10 Aligned_cols=47 Identities=28% Similarity=0.409 Sum_probs=18.5
Q ss_pred hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 012184 373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAEL 419 (469)
Q Consensus 373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~ 419 (469)
+..++++.+.+.+..+..++......+..++..++++..++....++
T Consensus 96 el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 142 (191)
T PF04156_consen 96 ELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKEL 142 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444443333333333333333334444444444433333
No 85
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.80 E-value=0.11 Score=53.44 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=25.5
Q ss_pred hhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 012184 376 RFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 427 (469)
Q Consensus 376 ~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~ 427 (469)
..++++++......-...++.++++++++.++++.++-.+-+++..++.+.|
T Consensus 469 t~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q 520 (1118)
T KOG1029|consen 469 TQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQ 520 (1118)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence 3333444443333333444555555565555555555555555555544444
No 86
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=0.081 Score=53.12 Aligned_cols=81 Identities=14% Similarity=0.300 Sum_probs=46.3
Q ss_pred hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 012184 373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIA-------ELQKMLESSQTIENEVQILRQQKSAFEQ 445 (469)
Q Consensus 373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~-------e~~~~l~~~~~~e~e~~~~~q~~~~~~~ 445 (469)
+...+...++.+++++++++.++.+++.++.+++.++..+.+.+. |++.....+..|++++++.....++++.
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~ 502 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELER 502 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555544433 3444445555677777777777777777
Q ss_pred HHHHhhhh
Q 012184 446 EMERATSV 453 (469)
Q Consensus 446 ~~~~~~~~ 453 (469)
.++++.+.
T Consensus 503 ~l~~l~k~ 510 (652)
T COG2433 503 KLAELRKM 510 (652)
T ss_pred HHHHHHHH
Confidence 77655533
No 87
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.70 E-value=0.32 Score=44.51 Aligned_cols=139 Identities=20% Similarity=0.137 Sum_probs=82.0
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME 95 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~ 95 (469)
.+..||+.+++=...... |...++-.++.++++||..- ......+.||+.+.+ .+.
T Consensus 69 ~l~~~d~~tg~~~~~~~l----------------~~~~FgEGit~~~d~l~qLT------Wk~~~~f~yd~~tl~--~~~ 124 (264)
T PF05096_consen 69 SLRKVDLETGKVLQSVPL----------------PPRYFGEGITILGDKLYQLT------WKEGTGFVYDPNTLK--KIG 124 (264)
T ss_dssp EEEEEETTTSSEEEEEE-----------------TTT--EEEEEEETTEEEEEE------SSSSEEEEEETTTTE--EEE
T ss_pred EEEEEECCCCcEEEEEEC----------------CccccceeEEEECCEEEEEE------ecCCeEEEEccccce--EEE
Confidence 889999999987766666 56678889999999999982 234458999998764 333
Q ss_pred cCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEE-EeeeCC-CCCCCCCCceEEEEcCcEEEEEec
Q 012184 96 TSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWD-AVEVTQ-TPPAPRYDHSAALHANRYLIVFGG 173 (469)
Q Consensus 96 ~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~-~~~~~g-~~p~~r~~~~~~~~~~~~l~v~GG 173 (469)
..+.+..|.+++..+..|++--| ++.++.+||.+.+=. .+.++. ..|..+ ---+-.+ +++||.
T Consensus 125 ---~~~y~~EGWGLt~dg~~Li~SDG-------S~~L~~~dP~~f~~~~~i~V~~~g~pv~~-LNELE~i-~G~IyA--- 189 (264)
T PF05096_consen 125 ---TFPYPGEGWGLTSDGKRLIMSDG-------SSRLYFLDPETFKEVRTIQVTDNGRPVSN-LNELEYI-NGKIYA--- 189 (264)
T ss_dssp ---EEE-SSS--EEEECSSCEEEE-S-------SSEEEEE-TTT-SEEEEEE-EETTEE----EEEEEEE-TTEEEE---
T ss_pred ---EEecCCcceEEEcCCCEEEEECC-------ccceEEECCcccceEEEEEEEECCEECCC-cEeEEEE-cCEEEE---
Confidence 33445689999977778888655 567999999876432 222211 111111 0011112 444443
Q ss_pred CCCCcccCcEEEEECCCCceEe
Q 012184 174 CSHSIFFNDLHVLDLQTNEWSQ 195 (469)
Q Consensus 174 ~~~~~~~~~i~~~d~~~~~W~~ 195 (469)
+--..+.|.+.||.++.-..
T Consensus 190 --NVW~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 190 --NVWQTDRIVRIDPETGKVVG 209 (264)
T ss_dssp --EETTSSEEEEEETTT-BEEE
T ss_pred --EeCCCCeEEEEeCCCCeEEE
Confidence 11235779999999987443
No 88
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=95.64 E-value=0.2 Score=49.85 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccc--CCCceeE
Q 012184 429 IENEVQILRQQKSAFEQEMERATSVQTQ--GSGGVWR 463 (469)
Q Consensus 429 ~e~e~~~~~q~~~~~~~~~~~~~~~q~q--~~~~~~~ 463 (469)
|..++..+.+.-.++.++...+....+- +..|.||
T Consensus 170 L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WG 206 (475)
T PRK10361 170 LAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWG 206 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchH
Confidence 4455555555555666665556555553 5678886
No 89
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.63 E-value=2.1 Score=43.84 Aligned_cols=112 Identities=14% Similarity=0.096 Sum_probs=56.9
Q ss_pred ceEEEEccCCc--eeeeeecccccCCccccCCCCCCCCCCcCeeeEEEC-CEEEEEccccCCCCCcceEEEEECCCCe--
Q 012184 16 VVMVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG-TKLLILGGHYKKSSDSMIVRFIDLETNL-- 90 (469)
Q Consensus 16 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~iy~~GG~~~~~~~~~~~~~~d~~t~~-- 90 (469)
.++.+|+.+++ |+.-...... . .. + +-....+++.+ +.||+... ...++.+|..|++
T Consensus 72 ~l~AlD~~tG~~~W~~~~~~~~~-----~----~~-~-~~~~~g~~~~~~~~V~v~~~-------~g~v~AlD~~TG~~~ 133 (488)
T cd00216 72 ALFALDAATGKVLWRYDPKLPAD-----R----GC-C-DVVNRGVAYWDPRKVFFGTF-------DGRLVALDAETGKQV 133 (488)
T ss_pred cEEEEECCCChhhceeCCCCCcc-----c----cc-c-ccccCCcEEccCCeEEEecC-------CCeEEEEECCCCCEe
Confidence 78899998765 8764432100 0 00 1 11112234446 78887532 1249999998876
Q ss_pred EEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCC---CccCcEEEEECCCCe--EEEee
Q 012184 91 CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSR---KLLNDVHFLDLETMT--WDAVE 146 (469)
Q Consensus 91 W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~---~~~~~v~~~d~~t~~--W~~~~ 146 (469)
|+.-......+......+.++.++.+| +|..+... .....++.||..|++ |+.-.
T Consensus 134 W~~~~~~~~~~~~~i~ssP~v~~~~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 134 WKFGNNDQVPPGYTMTGAPTIVKKLVI-IGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred eeecCCCCcCcceEecCCCEEECCEEE-EeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 876541100000011223344455554 55332211 134579999998764 86543
No 90
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.58 E-value=3 Score=42.02 Aligned_cols=188 Identities=9% Similarity=0.014 Sum_probs=93.8
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME 95 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~ 95 (469)
.++.+|+.+++-..+.... ..-...+....+.+|++.....+ ...++.+|+.++....+.
T Consensus 229 ~l~~~dl~~g~~~~l~~~~----------------g~~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt 288 (433)
T PRK04922 229 AIYVQDLATGQRELVASFR----------------GINGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLT 288 (433)
T ss_pred EEEEEECCCCCEEEeccCC----------------CCccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECc
Confidence 5777888777766554431 11111111122455655432221 235999999998876665
Q ss_pred cCCCCCCCCcceEEEEECC-EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEE-EcCcEEEEEec
Q 012184 96 TSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAAL-HANRYLIVFGG 173 (469)
Q Consensus 96 ~~g~~p~~r~~~~~~~~~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~~l~v~GG 173 (469)
.. +...... ...-++ +|++..... ....+|.+|+.++....+...+ .+...... -++++|++..+
T Consensus 289 ~~---~~~~~~~-~~spDG~~l~f~sd~~----g~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 289 NH---FGIDTEP-TWAPDGKSIYFTSDRG----GRPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHG 355 (433)
T ss_pred cC---CCCccce-EECCCCCEEEEEECCC----CCceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEEC
Confidence 21 1111111 111234 444433222 1346999999988887775322 12222222 22445555443
Q ss_pred CCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEe
Q 012184 174 CSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSIL 246 (469)
Q Consensus 174 ~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~ 246 (469)
.+. ...++++|+.++....+.. + +. -... ...-+++.+++.... .....++.+|+....=..+
T Consensus 356 ~~~---~~~I~v~d~~~g~~~~Lt~-~--~~-~~~p-~~spdG~~i~~~s~~--~g~~~L~~~~~~g~~~~~l 418 (433)
T PRK04922 356 SGG---QYRIAVMDLSTGSVRTLTP-G--SL-DESP-SFAPNGSMVLYATRE--GGRGVLAAVSTDGRVRQRL 418 (433)
T ss_pred CCC---ceeEEEEECCCCCeEECCC-C--CC-CCCc-eECCCCCEEEEEEec--CCceEEEEEECCCCceEEc
Confidence 221 2379999998888776542 1 11 1111 122245555554332 2235788888866543334
No 91
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.52 E-value=3.1 Score=41.80 Aligned_cols=143 Identities=8% Similarity=0.006 Sum_probs=73.7
Q ss_pred ceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCc
Q 012184 79 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH 158 (469)
Q Consensus 79 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~ 158 (469)
..+|.+|+.++....+.. .+..-.......-+..|++..... ....+|.+|+.++.+..+...+ .....
T Consensus 267 ~~Iy~~d~~~~~~~~lt~---~~~~~~~~~~spDg~~i~f~s~~~----g~~~iy~~d~~~g~~~~lt~~~----~~~~~ 335 (430)
T PRK00178 267 PEIYVMDLASRQLSRVTN---HPAIDTEPFWGKDGRTLYFTSDRG----GKPQIYKVNVNGGRAERVTFVG----NYNAR 335 (430)
T ss_pred ceEEEEECCCCCeEEccc---CCCCcCCeEECCCCCEEEEEECCC----CCceEEEEECCCCCEEEeecCC----CCccc
Confidence 469999999998887752 111111111111133555543221 2357999999999888775322 11111
Q ss_pred eEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEEC
Q 012184 159 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNM 238 (469)
Q Consensus 159 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~ 238 (469)
....-+++.|++....+. ...++++|+.++....+...+ .. ... ...-+++.+++..... ....++..++
T Consensus 336 ~~~Spdg~~i~~~~~~~~---~~~l~~~dl~tg~~~~lt~~~---~~-~~p-~~spdg~~i~~~~~~~--g~~~l~~~~~ 405 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDG---NFHVAAQDLQRGSVRILTDTS---LD-ESP-SVAPNGTMLIYATRQQ--GRGVLMLVSI 405 (430)
T ss_pred eEECCCCCEEEEEEccCC---ceEEEEEECCCCCEEEccCCC---CC-CCc-eECCCCCEEEEEEecC--CceEEEEEEC
Confidence 122222445555443221 246999999998877764211 11 111 1222556655543222 2345778877
Q ss_pred CCCc
Q 012184 239 TKLA 242 (469)
Q Consensus 239 ~~~~ 242 (469)
....
T Consensus 406 ~g~~ 409 (430)
T PRK00178 406 NGRV 409 (430)
T ss_pred CCCc
Confidence 5443
No 92
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.48 E-value=0.2 Score=50.07 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=25.9
Q ss_pred hhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 012184 366 SLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI 416 (469)
Q Consensus 366 ~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~ 416 (469)
..+..+....+++.+.+.+...+..+..|++.++.+++.++.....|+.++
T Consensus 274 D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 274 DVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444555555555555555555555555555555544
No 93
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.48 E-value=0.15 Score=51.41 Aligned_cols=41 Identities=15% Similarity=0.290 Sum_probs=15.5
Q ss_pred HHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHH
Q 012184 354 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE 394 (469)
Q Consensus 354 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~e 394 (469)
+..+.++.++.........+...++.+++.++..+...+++
T Consensus 146 E~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee 186 (546)
T PF07888_consen 146 EECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEE 186 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444443333333333333444444443333333333
No 94
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.46 E-value=3.3 Score=41.72 Aligned_cols=192 Identities=7% Similarity=-0.033 Sum_probs=94.9
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME 95 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~ 95 (469)
.++.+|+.+++...+.... ..-...+....|..|++.....+ ...+|.+|+.++....+.
T Consensus 227 ~i~~~dl~~g~~~~l~~~~----------------g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt 286 (435)
T PRK05137 227 RVYLLDLETGQRELVGNFP----------------GMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLT 286 (435)
T ss_pred EEEEEECCCCcEEEeecCC----------------CcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEcc
Confidence 7888999888877665432 11112222222445555432221 245999999998877765
Q ss_pred cCCCCCCCCcceEEEEECC-EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecC
Q 012184 96 TSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC 174 (469)
Q Consensus 96 ~~g~~p~~r~~~~~~~~~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~ 174 (469)
. .+.. .......-++ +|++..... ....+|++|+.+...+.+... ..........-++++|++.. .
T Consensus 287 ~---~~~~-~~~~~~spDG~~i~f~s~~~----g~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~-~ 353 (435)
T PRK05137 287 D---SPAI-DTSPSYSPDGSQIVFESDRS----GSPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTK-Q 353 (435)
T ss_pred C---CCCc-cCceeEcCCCCEEEEEECCC----CCCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEE-c
Confidence 2 1111 1111112234 454332111 135799999988877776521 11111212222234444433 2
Q ss_pred CCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCC-CcceEEEEECCCCcEEEec
Q 012184 175 SHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN-GCQETIVLNMTKLAWSILT 247 (469)
Q Consensus 175 ~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~-~~~d~~~~d~~~~~W~~~~ 247 (469)
... ...++++|+.+.....+.. + .........-+++.+++....... ....++.+|+....-..++
T Consensus 354 ~~~--~~~i~~~d~~~~~~~~lt~-~----~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 354 GGG--QFSIGVMKPDGSGERILTS-G----FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred CCC--ceEEEEEECCCCceEeccC-C----CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 211 2478899987766554431 1 111111111244554443322211 1257999999877666554
No 95
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.43 E-value=0.36 Score=42.74 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=14.4
Q ss_pred hhhhhhhhhhhhHhhhhhhhcchhhHHHHHH
Q 012184 366 SLTEVRTENSRFREKIDEVNSTHSELSKELS 396 (469)
Q Consensus 366 ~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~ 396 (469)
.+.+...+..+|...+..++.+..++++++.
T Consensus 49 ~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~ 79 (201)
T PF13851_consen 49 LMAEISQENKRLSEPLKKAEEEVEELRKQLK 79 (201)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444
No 96
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.42 E-value=0.27 Score=46.66 Aligned_cols=11 Identities=9% Similarity=0.422 Sum_probs=4.1
Q ss_pred hhhHhhhhhhh
Q 012184 375 SRFREKIDEVN 385 (469)
Q Consensus 375 ~~l~~~~~~~~ 385 (469)
..|+.++..++
T Consensus 182 ~~L~~e~~~L~ 192 (312)
T smart00787 182 DALEEELRQLK 192 (312)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 97
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.42 E-value=3.7 Score=42.06 Aligned_cols=123 Identities=13% Similarity=0.097 Sum_probs=64.7
Q ss_pred eeEEECCEEEEEccccCCCCCcceEEEEECCCCe--EEEeecCC-CCCC-CCcceEEEEEC-CEEEEEeccCCCCCccCc
Q 012184 57 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSG-KVPV-ARGGHSVTLVG-SRLIIFGGEDRSRKLLND 131 (469)
Q Consensus 57 ~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g-~~p~-~r~~~~~~~~~-~~lyi~GG~~~~~~~~~~ 131 (469)
+-++.++.||+.... ..++.+|..|++ |+.-.... .... +.....++..+ +++|+-. . ...
T Consensus 56 sPvv~~g~vy~~~~~-------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~-~------~g~ 121 (488)
T cd00216 56 TPLVVDGDMYFTTSH-------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGT-F------DGR 121 (488)
T ss_pred CCEEECCEEEEeCCC-------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEec-C------CCe
Confidence 345779999987542 238999998876 87643211 0000 11122234445 6777532 1 345
Q ss_pred EEEEECCCCe--EEEeeeCCCC-CCCCCCceEEEEcCcEEEEEecCCCC----cccCcEEEEECCCCc--eEee
Q 012184 132 VHFLDLETMT--WDAVEVTQTP-PAPRYDHSAALHANRYLIVFGGCSHS----IFFNDLHVLDLQTNE--WSQP 196 (469)
Q Consensus 132 v~~~d~~t~~--W~~~~~~g~~-p~~r~~~~~~~~~~~~l~v~GG~~~~----~~~~~i~~~d~~~~~--W~~~ 196 (469)
++.+|..|++ |+.-.. +.. +.-....+.++. ++.+| +|..+.. .....++.||..|++ |..-
T Consensus 122 v~AlD~~TG~~~W~~~~~-~~~~~~~~i~ssP~v~-~~~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 122 LVALDAETGKQVWKFGNN-DQVPPGYTMTGAPTIV-KKLVI-IGSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred EEEEECCCCCEeeeecCC-CCcCcceEecCCCEEE-CCEEE-EeccccccccCCCCcEEEEEECCCCceeeEee
Confidence 8999998764 765421 000 000011222333 56454 4432211 123579999998765 8753
No 98
>PRK03629 tolB translocation protein TolB; Provisional
Probab=95.36 E-value=3.5 Score=41.44 Aligned_cols=186 Identities=10% Similarity=0.079 Sum_probs=92.3
Q ss_pred ceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCc
Q 012184 79 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH 158 (469)
Q Consensus 79 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~ 158 (469)
..++.+|+.++.-..+. ..+..-.......-+.+|++.....+ ..++|++|+.++....+... +. ...
T Consensus 223 ~~i~i~dl~~G~~~~l~---~~~~~~~~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~---~~--~~~ 290 (429)
T PRK03629 223 SALVIQTLANGAVRQVA---SFPRHNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDG---RS--NNT 290 (429)
T ss_pred cEEEEEECCCCCeEEcc---CCCCCcCCeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCC---CC--CcC
Confidence 45899999888766665 22221111111111335655433221 23599999999887766421 11 111
Q ss_pred eEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEEC
Q 012184 159 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNM 238 (469)
Q Consensus 159 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~ 238 (469)
......|+..++|..... ....+|.+|+.+..-..+... ..........-+++.+++.+.... ..+++++|+
T Consensus 291 ~~~wSPDG~~I~f~s~~~--g~~~Iy~~d~~~g~~~~lt~~----~~~~~~~~~SpDG~~Ia~~~~~~g--~~~I~~~dl 362 (429)
T PRK03629 291 EPTWFPDSQNLAYTSDQA--GRPQVYKVNINGGAPQRITWE----GSQNQDADVSSDGKFMVMVSSNGG--QQHIAKQDL 362 (429)
T ss_pred ceEECCCCCEEEEEeCCC--CCceEEEEECCCCCeEEeecC----CCCccCEEECCCCCEEEEEEccCC--CceEEEEEC
Confidence 222223444444433211 135799999988776665321 111111111224444444332221 347899999
Q ss_pred CCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184 239 TKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 239 ~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~ 295 (469)
.+..+..+..... ..+ ..+ .+++..+++.+.++. ...++..+++..
T Consensus 363 ~~g~~~~Lt~~~~-------~~~-p~~--SpDG~~i~~~s~~~~-~~~l~~~~~~G~ 408 (429)
T PRK03629 363 ATGGVQVLTDTFL-------DET-PSI--APNGTMVIYSSSQGM-GSVLNLVSTDGR 408 (429)
T ss_pred CCCCeEEeCCCCC-------CCC-ceE--CCCCCEEEEEEcCCC-ceEEEEEECCCC
Confidence 9998887753210 111 122 235566666655432 335666776433
No 99
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.32 E-value=0.16 Score=48.33 Aligned_cols=43 Identities=21% Similarity=0.353 Sum_probs=17.9
Q ss_pred hHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 012184 377 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAEL 419 (469)
Q Consensus 377 l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~ 419 (469)
+..+++.++.+..++.+++++++.+..++..++.+++.+..++
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444433333
No 100
>PTZ00420 coronin; Provisional
Probab=95.29 E-value=4.3 Score=42.12 Aligned_cols=107 Identities=16% Similarity=0.161 Sum_probs=50.5
Q ss_pred EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceE
Q 012184 115 RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS 194 (469)
Q Consensus 115 ~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~ 194 (469)
.+++.||.+. .+.+||+.+..=.. .. .. +..-.++....++.+++.++.+ ..+.+||+.+..-.
T Consensus 139 ~iLaSgS~Dg------tIrIWDl~tg~~~~-~i--~~--~~~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 139 YIMCSSGFDS------FVNIWDIENEKRAF-QI--NM--PKKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQEIA 202 (568)
T ss_pred eEEEEEeCCC------eEEEEECCCCcEEE-EE--ec--CCcEEEEEECCCCCEEEEEecC-----CEEEEEECCCCcEE
Confidence 4555566442 48888988765211 11 11 1112233333356677766543 45889999876432
Q ss_pred eeeecCCCCCCCcceEEE--E--ECCEEEEEecCCCCCCcceEEEEECCC
Q 012184 195 QPEIKGDLVTGRAGHAGI--T--IDENWYIVGGGDNNNGCQETIVLNMTK 240 (469)
Q Consensus 195 ~~~~~~~~p~~r~~~~~~--~--~~~~l~v~GG~~~~~~~~d~~~~d~~~ 240 (469)
. ........+..-... . -++..++.+|.+.. ....+.+||+..
T Consensus 203 ~--tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~-~~R~VkLWDlr~ 249 (568)
T PTZ00420 203 S--SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN-NMREMKLWDLKN 249 (568)
T ss_pred E--EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCC-CccEEEEEECCC
Confidence 1 110111111111111 1 13455666665442 123577888764
No 101
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.27 E-value=0.65 Score=45.04 Aligned_cols=118 Identities=11% Similarity=0.103 Sum_probs=69.8
Q ss_pred ECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcc-------cCcEE
Q 012184 112 VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIF-------FNDLH 184 (469)
Q Consensus 112 ~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~-------~~~i~ 184 (469)
.+++|+.++.. ....+||+.+..-...+ .++.+...-.++.++++ ||++........ .-++.
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~-LY~m~~~~~~~~~~~~~~~~FE~l 143 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDK-LYAMDRSPFPEPAGRPDFPCFEAL 143 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCe-EEEeeccCccccccCccceeEEEe
Confidence 48899988654 33889999998876443 44555555566677555 999987643311 12233
Q ss_pred EEEC--------CCCceEeeeecCCCCCCCc-------ceEEEEE-CCEEEE-EecCCCCCCcceEEEEECCCCcEEEec
Q 012184 185 VLDL--------QTNEWSQPEIKGDLVTGRA-------GHAGITI-DENWYI-VGGGDNNNGCQETIVLNMTKLAWSILT 247 (469)
Q Consensus 185 ~~d~--------~~~~W~~~~~~~~~p~~r~-------~~~~~~~-~~~l~v-~GG~~~~~~~~d~~~~d~~~~~W~~~~ 247 (469)
.|+. ..-.|..++ ++|..+. -.+-+++ +..|+| +-|.. .-.+.||+.+.+|+++.
T Consensus 144 ~~~~~~~~~~~~~~w~W~~LP---~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 144 VYRPPPDDPSPEESWSWRSLP---PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHG 215 (342)
T ss_pred ccccccccccCCCcceEEcCC---CCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeecc
Confidence 3331 123466654 2232222 1233344 566777 32211 24799999999999986
Q ss_pred c
Q 012184 248 S 248 (469)
Q Consensus 248 ~ 248 (469)
.
T Consensus 216 d 216 (342)
T PF07893_consen 216 D 216 (342)
T ss_pred c
Confidence 4
No 102
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=95.26 E-value=3 Score=40.12 Aligned_cols=136 Identities=15% Similarity=0.050 Sum_probs=63.7
Q ss_pred ceEEEEccC-CceeeeeecccccCCccccCCCCCCCCCCcCeeeEE--ECCEEEEEccccCCCCCcceEEEEECC-CCeE
Q 012184 16 VVMVFDLRS-LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK--WGTKLLILGGHYKKSSDSMIVRFIDLE-TNLC 91 (469)
Q Consensus 16 ~~~~~d~~~-~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~--~~~~iy~~GG~~~~~~~~~~~~~~d~~-t~~W 91 (469)
.+..||+.+ +++..+.... .....+.++. -+..||+. +... ..+..|++. ++++
T Consensus 13 ~I~~~~~~~~g~l~~~~~~~----------------~~~~~~~l~~spd~~~lyv~-~~~~-----~~i~~~~~~~~g~l 70 (330)
T PRK11028 13 QIHVWNLNHEGALTLLQVVD----------------VPGQVQPMVISPDKRHLYVG-VRPE-----FRVLSYRIADDGAL 70 (330)
T ss_pred CEEEEEECCCCceeeeeEEe----------------cCCCCccEEECCCCCEEEEE-ECCC-----CcEEEEEECCCCce
Confidence 677888864 6777666542 1111222222 24456664 3322 236667765 5667
Q ss_pred EEeecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCccCcEEEEECCCCe-E-EEeeeCCCCCCCCCCceEEEEcC-c
Q 012184 92 GVMETSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLETMT-W-DAVEVTQTPPAPRYDHSAALHAN-R 166 (469)
Q Consensus 92 ~~~~~~g~~p~~r~~~~~~~~-~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~-W-~~~~~~g~~p~~r~~~~~~~~~~-~ 166 (469)
..+.. .+.+..-+.++.. ++ .||+. .+. .+.+.+|++.++. . ..+. ..+.....|.++...+ +
T Consensus 71 ~~~~~---~~~~~~p~~i~~~~~g~~l~v~-~~~-----~~~v~v~~~~~~g~~~~~~~---~~~~~~~~~~~~~~p~g~ 138 (330)
T PRK11028 71 TFAAE---SPLPGSPTHISTDHQGRFLFSA-SYN-----ANCVSVSPLDKDGIPVAPIQ---IIEGLEGCHSANIDPDNR 138 (330)
T ss_pred EEeee---ecCCCCceEEEECCCCCEEEEE-EcC-----CCeEEEEEECCCCCCCCcee---eccCCCcccEeEeCCCCC
Confidence 65542 1211111222222 34 45554 322 3557888876421 1 1111 1111222355444434 4
Q ss_pred EEEEEecCCCCcccCcEEEEECCC
Q 012184 167 YLIVFGGCSHSIFFNDLHVLDLQT 190 (469)
Q Consensus 167 ~l~v~GG~~~~~~~~~i~~~d~~~ 190 (469)
++|+..- ..+.+.+||+.+
T Consensus 139 ~l~v~~~-----~~~~v~v~d~~~ 157 (330)
T PRK11028 139 TLWVPCL-----KEDRIRLFTLSD 157 (330)
T ss_pred EEEEeeC-----CCCEEEEEEECC
Confidence 5665432 236799999876
No 103
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.22 E-value=3.2 Score=41.43 Aligned_cols=209 Identities=13% Similarity=0.062 Sum_probs=105.2
Q ss_pred CCEEEEEccccCCCC-----CcceEEEEECCCCeEE--EeecCCCCCCCCc-ceEEEEE-CC-EEEEEeccCCCCCccCc
Q 012184 62 GTKLLILGGHYKKSS-----DSMIVRFIDLETNLCG--VMETSGKVPVARG-GHSVTLV-GS-RLIIFGGEDRSRKLLND 131 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~-----~~~~~~~~d~~t~~W~--~~~~~g~~p~~r~-~~~~~~~-~~-~lyi~GG~~~~~~~~~~ 131 (469)
++..|++........ ....++++...+..-. .+- ..+.... ...+..- ++ .|+|.-.... . .++
T Consensus 180 d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvf---e~~~~~~~~~~~~~s~d~~~l~i~~~~~~--~-~s~ 253 (414)
T PF02897_consen 180 DGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVF---EEPDEPFWFVSVSRSKDGRYLFISSSSGT--S-ESE 253 (414)
T ss_dssp TSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEE---C-TTCTTSEEEEEE-TTSSEEEEEEESSS--S-EEE
T ss_pred CCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEE---eecCCCcEEEEEEecCcccEEEEEEEccc--c-CCe
Confidence 435555554444321 3567999988877654 222 1222222 2222222 33 3444333221 1 478
Q ss_pred EEEEECCCC-----eEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc---eEeeeecCCCC
Q 012184 132 VHFLDLETM-----TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE---WSQPEIKGDLV 203 (469)
Q Consensus 132 v~~~d~~t~-----~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~---W~~~~~~~~~p 203 (469)
+++++.... .|..+.+. ..-..+.+... ++.+|+.... +.....+..+++.+.. |..+-. +..
T Consensus 254 v~~~d~~~~~~~~~~~~~l~~~----~~~~~~~v~~~-~~~~yi~Tn~--~a~~~~l~~~~l~~~~~~~~~~~l~--~~~ 324 (414)
T PF02897_consen 254 VYLLDLDDGGSPDAKPKLLSPR----EDGVEYYVDHH-GDRLYILTND--DAPNGRLVAVDLADPSPAEWWTVLI--PED 324 (414)
T ss_dssp EEEEECCCTTTSS-SEEEEEES----SSS-EEEEEEE-TTEEEEEE-T--T-TT-EEEEEETTSTSGGGEEEEEE----S
T ss_pred EEEEeccccCCCcCCcEEEeCC----CCceEEEEEcc-CCEEEEeeCC--CCCCcEEEEecccccccccceeEEc--CCC
Confidence 999999875 78887631 11111222223 6678887653 2334678889988765 664321 111
Q ss_pred CCCcceEEEEECCEEEEEecCCCCCCcceEEEEECC-CCcEEEeccCCCCCCCCCCCcceEEEEE--cCCcEEEEEeccC
Q 012184 204 TGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMT-KLAWSILTSVKGRNPLASEGLSVCSAII--EGEHHLVAFGGYN 280 (469)
Q Consensus 204 ~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~-~~~W~~~~~~~~~~p~~r~~~s~~~~~~--~~~~~l~v~GG~~ 280 (469)
.....-.+...+++|++..= ......+.++|+. ...-..++. +. .+ ++..... .++...|.+.+..
T Consensus 325 ~~~~l~~~~~~~~~Lvl~~~---~~~~~~l~v~~~~~~~~~~~~~~-p~------~g-~v~~~~~~~~~~~~~~~~ss~~ 393 (414)
T PF02897_consen 325 EDVSLEDVSLFKDYLVLSYR---ENGSSRLRVYDLDDGKESREIPL-PE------AG-SVSGVSGDFDSDELRFSYSSFT 393 (414)
T ss_dssp SSEEEEEEEEETTEEEEEEE---ETTEEEEEEEETT-TEEEEEEES-SS------SS-EEEEEES-TT-SEEEEEEEETT
T ss_pred CceeEEEEEEECCEEEEEEE---ECCccEEEEEECCCCcEEeeecC-Cc------ce-EEeccCCCCCCCEEEEEEeCCC
Confidence 11233345556788877632 2235678999998 433333322 11 11 2222221 1244555566654
Q ss_pred CCCCceEEEEECCCCCCC
Q 012184 281 GKYNNEVFVMRLKPRDIP 298 (469)
Q Consensus 281 ~~~~~~~~~~d~~~~~w~ 298 (469)
. ...+|.||+.+++..
T Consensus 394 ~--P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 394 T--PPTVYRYDLATGELT 409 (414)
T ss_dssp E--EEEEEEEETTTTCEE
T ss_pred C--CCEEEEEECCCCCEE
Confidence 3 457999999887654
No 104
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.22 E-value=0.38 Score=46.57 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=23.2
Q ss_pred hhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 012184 376 RFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQ 420 (469)
Q Consensus 376 ~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~ 420 (469)
.+.++..+.+.....++.+.+.++..+++.+.++.+.+.++.+++
T Consensus 358 ~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 358 LLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444445555555566666666666555555554333
No 105
>PRK09039 hypothetical protein; Validated
Probab=95.16 E-value=0.26 Score=47.57 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q 012184 406 RSRCFKLEAQIAELQKMLESSQ 427 (469)
Q Consensus 406 ~~~~~~~~~~~~e~~~~l~~~~ 427 (469)
.-++..|+++++.+++++..++
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le 157 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALE 157 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555544444
No 106
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.15 E-value=0.33 Score=42.77 Aligned_cols=94 Identities=20% Similarity=0.326 Sum_probs=47.2
Q ss_pred HHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHHhhhH
Q 012184 354 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM----LESSQTI 429 (469)
Q Consensus 354 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~----l~~~~~~ 429 (469)
...+.....+...+.+.......+...+...+.......++++..+.++...++....+.++..+++++ ....+.+
T Consensus 84 ~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~ 163 (191)
T PF04156_consen 84 SELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQEL 163 (191)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444445555555555555555555555555556666666666666666666655555522 2222334
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012184 430 ENEVQILRQQKSAFEQEM 447 (469)
Q Consensus 430 e~e~~~~~q~~~~~~~~~ 447 (469)
..+++++++.++++++.+
T Consensus 164 ~~~~~~~~~~~~~l~~~~ 181 (191)
T PF04156_consen 164 RSQLERLQENLQQLEEKI 181 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 107
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.11 E-value=0.26 Score=47.00 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 012184 429 IENEVQILRQQKSAFEQEMERA 450 (469)
Q Consensus 429 ~e~e~~~~~q~~~~~~~~~~~~ 450 (469)
.+++.+.+..+.+...++++++
T Consensus 111 ~~~e~~sl~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 111 FQEERDSLKNQYEYASNQLDRL 132 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 108
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.10 E-value=2.3 Score=38.96 Aligned_cols=59 Identities=14% Similarity=0.291 Sum_probs=37.7
Q ss_pred cCcEEEEECCCCceEeeeecCCCCCCCcceEEEEEC--CEEEEEecCCCCCCcceEEEEECCCCcEEEec
Q 012184 180 FNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID--ENWYIVGGGDNNNGCQETIVLNMTKLAWSILT 247 (469)
Q Consensus 180 ~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~--~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~ 247 (469)
...+++||+++..|....-.+ ..+|-. + ..++ +.+++. .-..+.+.+||+.+.+.+.++
T Consensus 253 ~g~l~rfdPs~~sW~eypLPg--s~arpy-s-~rVD~~grVW~s-----ea~agai~rfdpeta~ftv~p 313 (353)
T COG4257 253 TGSLHRFDPSVTSWIEYPLPG--SKARPY-S-MRVDRHGRVWLS-----EADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred CceeeEeCcccccceeeeCCC--CCCCcc-e-eeeccCCcEEee-----ccccCceeecCcccceEEEec
Confidence 356999999999999864322 223332 2 2333 445542 112457899999999988874
No 109
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=95.01 E-value=0.44 Score=45.33 Aligned_cols=53 Identities=15% Similarity=0.308 Sum_probs=35.4
Q ss_pred hhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 012184 372 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE 424 (469)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~ 424 (469)
.....++.++++.+.++..++.++++++.++...++++.+++..++...+.+.
T Consensus 56 ~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 56 LEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666667777777777777777777777777777777766665555443
No 110
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.98 E-value=0.52 Score=44.62 Aligned_cols=32 Identities=16% Similarity=0.273 Sum_probs=12.1
Q ss_pred hHhhhhhhhcchhhHHHHHHHHHHHHHHhhhH
Q 012184 377 FREKIDEVNSTHSELSKELSSVQGQLVAERSR 408 (469)
Q Consensus 377 l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~ 408 (469)
.++++.+++..+.+..+++..+.+|.+.++.+
T Consensus 121 v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtr 152 (499)
T COG4372 121 VRQELAAARQNLAKAQQELARLTKQAQDLQTR 152 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 111
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=94.97 E-value=1.1 Score=36.47 Aligned_cols=83 Identities=16% Similarity=0.140 Sum_probs=55.4
Q ss_pred CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCC-CCcceEEEEE-CCCCc
Q 012184 165 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN-NGCQETIVLN-MTKLA 242 (469)
Q Consensus 165 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-~~~~d~~~~d-~~~~~ 242 (469)
||.+|-..-. .....+.|..||+.+.+|..+..............++.++++|.++.-.... ...-++|+++ ..+..
T Consensus 5 nGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~~ 83 (129)
T PF08268_consen 5 NGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQE 83 (129)
T ss_pred CcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccce
Confidence 6656655443 2334577999999999999886421233455566778889998887543322 2356899884 66789
Q ss_pred EEEecc
Q 012184 243 WSILTS 248 (469)
Q Consensus 243 W~~~~~ 248 (469)
|++...
T Consensus 84 Wsk~~~ 89 (129)
T PF08268_consen 84 WSKKHI 89 (129)
T ss_pred EEEEEE
Confidence 997643
No 112
>PRK04043 tolB translocation protein TolB; Provisional
Probab=94.96 E-value=4.5 Score=40.49 Aligned_cols=185 Identities=12% Similarity=0.048 Sum_probs=97.6
Q ss_pred eEEEEECCCCeEEEeecCCCCCCCCcceEEEEECC-EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCc
Q 012184 80 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH 158 (469)
Q Consensus 80 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~ 158 (469)
.+|.+|+.++.=+.+.. .+ .........-++ +|++.-... ...++|++|+.+..++.++.. +. ...
T Consensus 214 ~Iyv~dl~tg~~~~lt~---~~-g~~~~~~~SPDG~~la~~~~~~----g~~~Iy~~dl~~g~~~~LT~~---~~--~d~ 280 (419)
T PRK04043 214 TLYKYNLYTGKKEKIAS---SQ-GMLVVSDVSKDGSKLLLTMAPK----GQPDIYLYDTNTKTLTQITNY---PG--IDV 280 (419)
T ss_pred EEEEEECCCCcEEEEec---CC-CcEEeeEECCCCCEEEEEEccC----CCcEEEEEECCCCcEEEcccC---CC--ccC
Confidence 69999998887666652 11 111111122234 555443322 145799999999998887532 11 111
Q ss_pred eEEEEc-CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCC---CcceEE
Q 012184 159 SAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN---GCQETI 234 (469)
Q Consensus 159 ~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~---~~~d~~ 234 (469)
...... +++||+..... ...+||++|+.++....+...+. .......-+..|++........ ...+++
T Consensus 281 ~p~~SPDG~~I~F~Sdr~---g~~~Iy~~dl~~g~~~rlt~~g~-----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~ 352 (419)
T PRK04043 281 NGNFVEDDKRIVFVSDRL---GYPNIFMKKLNSGSVEQVVFHGK-----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLY 352 (419)
T ss_pred ccEECCCCCEEEEEECCC---CCceEEEEECCCCCeEeCccCCC-----cCceECCCCCEEEEEEcCCCcccCCCCcEEE
Confidence 122222 34566654332 23689999999988877653221 2222222233444443322111 235899
Q ss_pred EEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCC
Q 012184 235 VLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD 296 (469)
Q Consensus 235 ~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~ 296 (469)
++|+.+..+..+..... .. ...+.. ++..++|-... .....++.++++.+.
T Consensus 353 v~d~~~g~~~~LT~~~~-------~~-~p~~SP--DG~~I~f~~~~-~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 353 LISTNSDYIRRLTANGV-------NQ-FPRFSS--DGGSIMFIKYL-GNQSALGIIRLNYNK 403 (419)
T ss_pred EEECCCCCeEECCCCCC-------cC-CeEECC--CCCEEEEEEcc-CCcEEEEEEecCCCe
Confidence 99999999888764211 11 123333 33444443322 224568888886643
No 113
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.86 E-value=0.89 Score=38.30 Aligned_cols=54 Identities=22% Similarity=0.361 Sum_probs=27.1
Q ss_pred HhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 012184 363 LELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI 416 (469)
Q Consensus 363 ~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~ 416 (469)
+...+.....+...+...++.++..++++++++...+.....++.++..++..+
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~ 110 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKL 110 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555555555544444444444444333
No 114
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.83 E-value=1.2 Score=43.71 Aligned_cols=110 Identities=18% Similarity=0.279 Sum_probs=59.5
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeE-EEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLC-GVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM 140 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W-~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~ 140 (469)
+|+|+..|+..+. +.+||..+..- ..+... ..|..+.. -+..++.++++|+-+. -+-.+|+++.
T Consensus 79 DG~LlaaGD~sG~------V~vfD~k~r~iLR~~~ah-~apv~~~~--f~~~d~t~l~s~sDd~------v~k~~d~s~a 143 (487)
T KOG0310|consen 79 DGRLLAAGDESGH------VKVFDMKSRVILRQLYAH-QAPVHVTK--FSPQDNTMLVSGSDDK------VVKYWDLSTA 143 (487)
T ss_pred CCeEEEccCCcCc------EEEeccccHHHHHHHhhc-cCceeEEE--ecccCCeEEEecCCCc------eEEEEEcCCc
Confidence 6888888876554 78888555221 111100 12222211 2235788998886443 1445666666
Q ss_pred eEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCC-ceE
Q 012184 141 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN-EWS 194 (469)
Q Consensus 141 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~-~W~ 194 (469)
.- .....|.-..-|++ .++-.+++|++.||+++. |-.||+.+. .|.
T Consensus 144 ~v-~~~l~~htDYVR~g--~~~~~~~hivvtGsYDg~-----vrl~DtR~~~~~v 190 (487)
T KOG0310|consen 144 YV-QAELSGHTDYVRCG--DISPANDHIVVTGSYDGK-----VRLWDTRSLTSRV 190 (487)
T ss_pred EE-EEEecCCcceeEee--ccccCCCeEEEecCCCce-----EEEEEeccCCcee
Confidence 53 33333433333332 222236789999999864 556776655 454
No 115
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.82 E-value=0.22 Score=50.14 Aligned_cols=10 Identities=10% Similarity=0.053 Sum_probs=7.4
Q ss_pred ECCEEEEEcc
Q 012184 61 WGTKLLILGG 70 (469)
Q Consensus 61 ~~~~iy~~GG 70 (469)
.+|.++.-+.
T Consensus 27 ~dg~~~~k~~ 36 (652)
T COG2433 27 EDGEIVEKGE 36 (652)
T ss_pred ecCcEEeehh
Confidence 5777887776
No 116
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.81 E-value=1.1 Score=36.87 Aligned_cols=75 Identities=13% Similarity=0.221 Sum_probs=35.9
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 427 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~ 427 (469)
+..+..+....+..+.....+.+..++.+..++..+..+..++.+++.+|...+..-..+.+.+++.+.+....+
T Consensus 26 v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 26 VESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444555555555555555555555555555554444444444444444433333
No 117
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.79 E-value=4.9 Score=40.06 Aligned_cols=147 Identities=12% Similarity=0.074 Sum_probs=78.0
Q ss_pred ceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECC-EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCC
Q 012184 79 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD 157 (469)
Q Consensus 79 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~ 157 (469)
..++++|+.++.-..+.. .+....... ..-++ .|++...... ..++|.+|+.+.....+..... ...
T Consensus 214 ~~i~v~d~~~g~~~~~~~---~~~~~~~~~-~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~---~~~- 281 (417)
T TIGR02800 214 PEIYVQDLATGQREKVAS---FPGMNGAPA-FSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPG---IDT- 281 (417)
T ss_pred cEEEEEECCCCCEEEeec---CCCCccceE-ECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCC---CCC-
Confidence 459999999987766652 221111111 11233 5655433221 3569999999888776643211 110
Q ss_pred ceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEE-ECCEEEEEecCCCCCCcceEEEE
Q 012184 158 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT-IDENWYIVGGGDNNNGCQETIVL 236 (469)
Q Consensus 158 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~d~~~~ 236 (469)
.....-++++|++...... ...+|++|+.+..+..+... ......... -+++.+++..... ....++++
T Consensus 282 ~~~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~-----~~~~~~~~~spdg~~i~~~~~~~--~~~~i~~~ 351 (417)
T TIGR02800 282 EPSWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFR-----GGYNASPSWSPDGDLIAFVHREG--GGFNIAVM 351 (417)
T ss_pred CEEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecC-----CCCccCeEECCCCCEEEEEEccC--CceEEEEE
Confidence 1111122344544432222 24799999988888766421 112222222 2455555544322 24579999
Q ss_pred ECCCCcEEEec
Q 012184 237 NMTKLAWSILT 247 (469)
Q Consensus 237 d~~~~~W~~~~ 247 (469)
|+.+..+..+.
T Consensus 352 d~~~~~~~~l~ 362 (417)
T TIGR02800 352 DLDGGGERVLT 362 (417)
T ss_pred eCCCCCeEEcc
Confidence 99887776654
No 118
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.74 E-value=1.6 Score=39.99 Aligned_cols=154 Identities=15% Similarity=0.037 Sum_probs=82.1
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCc--ceEEEEECCCCeEEE
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS--MIVRFIDLETNLCGV 93 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~--~~~~~~d~~t~~W~~ 93 (469)
.+..+|+.+++++.+...... ..+..+....++.-++.||+---........ ..++++++. ++...
T Consensus 61 ~~~~~d~~~g~~~~~~~~~~~-----------~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~ 128 (246)
T PF08450_consen 61 GIAVVDPDTGKVTVLADLPDG-----------GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV 128 (246)
T ss_dssp CEEEEETTTTEEEEEEEEETT-----------CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE
T ss_pred ceEEEecCCCcEEEEeeccCC-----------CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE
Confidence 456779999999988876211 0134455555555577877753222111112 569999999 77666
Q ss_pred eecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCccCcEEEEECC--CCeEEEeeeCCCCCCCC-CCceEEEEcCcEE
Q 012184 94 METSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLE--TMTWDAVEVTQTPPAPR-YDHSAALHANRYL 168 (469)
Q Consensus 94 ~~~~g~~p~~r~~~~~~~~-~~-~lyi~GG~~~~~~~~~~v~~~d~~--t~~W~~~~~~g~~p~~r-~~~~~~~~~~~~l 168 (469)
+... ..... +++.- ++ .||+.- ...+.|+.|++. +..+.........+... .--.+++..++.|
T Consensus 129 ~~~~----~~~pN-Gi~~s~dg~~lyv~d------s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l 197 (246)
T PF08450_consen 129 VADG----LGFPN-GIAFSPDGKTLYVAD------SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL 197 (246)
T ss_dssp EEEE----ESSEE-EEEEETTSSEEEEEE------TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E
T ss_pred EecC----ccccc-ceEECCcchheeecc------cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE
Confidence 5521 11112 23332 33 577642 135669999885 33344433221222222 1234455557889
Q ss_pred EEEecCCCCcccCcEEEEECCCCceEeee
Q 012184 169 IVFGGCSHSIFFNDLHVLDLQTNEWSQPE 197 (469)
Q Consensus 169 ~v~GG~~~~~~~~~i~~~d~~~~~W~~~~ 197 (469)
|+..- ..+.|++||+....-..+.
T Consensus 198 ~va~~-----~~~~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 198 WVADW-----GGGRIVVFDPDGKLLREIE 221 (246)
T ss_dssp EEEEE-----TTTEEEEEETTSCEEEEEE
T ss_pred EEEEc-----CCCEEEEECCCccEEEEEc
Confidence 88632 1257999999855555553
No 119
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=94.71 E-value=2.8 Score=36.95 Aligned_cols=155 Identities=12% Similarity=0.067 Sum_probs=74.8
Q ss_pred EEEECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEeeeC-CCCCCCCCCceEEEEc-CcEEEEEecCCCCcccCcEE
Q 012184 109 VTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVT-QTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLH 184 (469)
Q Consensus 109 ~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~~~~-g~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~ 184 (469)
++...+++|+|-|. .+|+++..... -..+... +.+| ..--++.... ++++|+|-| +..|
T Consensus 12 ~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p--~~IDAa~~~~~~~~~yfFkg-------~~yw 74 (194)
T cd00094 12 VTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLP--SPVDAAFERPDTGKIYFFKG-------DKYW 74 (194)
T ss_pred EEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCC--CCccEEEEECCCCEEEEECC-------CEEE
Confidence 34456889999653 36677654111 1111110 1122 2222333333 378999977 4688
Q ss_pred EEECCCCceEeeeecC--CCCC--CCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEe-cc-CCCCCC-CC
Q 012184 185 VLDLQTNEWSQPEIKG--DLVT--GRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSIL-TS-VKGRNP-LA 256 (469)
Q Consensus 185 ~~d~~~~~W~~~~~~~--~~p~--~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~-~~-~~~~~p-~~ 256 (469)
+|+..+..+.-+.... ..|. .....+.... ++++|+|-| +..|+||..+.....- +. +....+ .+
T Consensus 75 ~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g~p 147 (194)
T cd00094 75 VYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPGVP 147 (194)
T ss_pred EEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCcC
Confidence 8886653332221111 1111 2222222222 578999988 3789999866543210 00 000111 11
Q ss_pred CCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCC
Q 012184 257 SEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD 296 (469)
Q Consensus 257 r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~ 296 (469)
. ...+ ++.. .++.+|.|-| +..|+||..+..
T Consensus 148 ~-~ida-a~~~-~~~~~yfF~g------~~y~~~d~~~~~ 178 (194)
T cd00094 148 D-KVDA-AFRW-LDGYYYFFKG------DQYWRFDPRSKE 178 (194)
T ss_pred C-Ccce-eEEe-CCCcEEEEEC------CEEEEEeCccce
Confidence 1 1111 1222 2367888876 358999987654
No 120
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=94.65 E-value=4.6 Score=39.21 Aligned_cols=250 Identities=15% Similarity=0.097 Sum_probs=115.9
Q ss_pred EEEcccCCC--cccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcc
Q 012184 2 LLRCSIRNY--TLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM 79 (469)
Q Consensus 2 ~~~GG~~~~--~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~ 79 (469)
+++|+...+ ..+ .++.||..+++++.+...... ..| ...+...-++.||+..... .....-
T Consensus 2 ~~vgsy~~~~~~gI--~~~~~d~~~g~l~~~~~~~~~-------------~~P-s~l~~~~~~~~LY~~~e~~-~~~g~v 64 (345)
T PF10282_consen 2 LYVGSYTNGKGGGI--YVFRFDEETGTLTLVQTVAEG-------------ENP-SWLAVSPDGRRLYVVNEGS-GDSGGV 64 (345)
T ss_dssp EEEEECCSSSSTEE--EEEEEETTTTEEEEEEEEEES-------------SSE-CCEEE-TTSSEEEEEETTS-STTTEE
T ss_pred EEEEcCCCCCCCcE--EEEEEcCCCCCceEeeeecCC-------------CCC-ceEEEEeCCCEEEEEEccc-cCCCCE
Confidence 356776541 111 356667799999988864211 111 1112222366777774432 111222
Q ss_pred eEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CC-EEEEEeccCCCCCccCcEEEEECCCC-eEEEee------eCC
Q 012184 80 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GS-RLIIFGGEDRSRKLLNDVHFLDLETM-TWDAVE------VTQ 149 (469)
Q Consensus 80 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~-~lyi~GG~~~~~~~~~~v~~~d~~t~-~W~~~~------~~g 149 (469)
..+.++..+++.+.+.. .+......+-+.+ ++ .||+. -+. .+.+.+|++... .-.... ..|
T Consensus 65 ~~~~i~~~~g~L~~~~~---~~~~g~~p~~i~~~~~g~~l~va-ny~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g 135 (345)
T PF10282_consen 65 SSYRIDPDTGTLTLLNS---VPSGGSSPCHIAVDPDGRFLYVA-NYG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSG 135 (345)
T ss_dssp EEEEEETTTTEEEEEEE---EEESSSCEEEEEECTTSSEEEEE-ETT-----TTEEEEEEECTTSEEEEEEEEEESEEEE
T ss_pred EEEEECCCcceeEEeee---eccCCCCcEEEEEecCCCEEEEE-Ecc-----CCeEEEEEccCCcccceeeeecccCCCC
Confidence 34555566678888763 2322222222333 33 45554 222 345777877763 222221 112
Q ss_pred CCC---CCCCCceEEEEcC-cEEEEEecCCCCcccCcEEEEECCCCc--eEeeeecCCCCCCCcceEEEEE--CCEEEEE
Q 012184 150 TPP---APRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITI--DENWYIV 221 (469)
Q Consensus 150 ~~p---~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~ 221 (469)
+.| ..-..|.+....+ +++|+.. . -.+.|++|++.... ....... ..|.+-.-..++.. +..+||+
T Consensus 136 ~~~~rq~~~h~H~v~~~pdg~~v~v~d-l----G~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~ 209 (345)
T PF10282_consen 136 PNPDRQEGPHPHQVVFSPDGRFVYVPD-L----GADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVV 209 (345)
T ss_dssp SSTTTTSSTCEEEEEE-TTSSEEEEEE-T----TTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEE
T ss_pred CcccccccccceeEEECCCCCEEEEEe-c----CCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEe
Confidence 221 2223355554444 4666643 1 23679999887665 5443221 22332222233333 3478898
Q ss_pred ecCCCCCCcceEEEEECC--CCcEEEeccCCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEEC
Q 012184 222 GGGDNNNGCQETIVLNMT--KLAWSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRL 292 (469)
Q Consensus 222 GG~~~~~~~~d~~~~d~~--~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~ 292 (469)
... .+.+..|+.. +..++.+...+..............+.+.+ +.+|||.-.. .+.+.+|++
T Consensus 210 ~e~-----s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~----~~sI~vf~~ 274 (345)
T PF10282_consen 210 NEL-----SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG----SNSISVFDL 274 (345)
T ss_dssp ETT-----TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT----TTEEEEEEE
T ss_pred cCC-----CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc----CCEEEEEEE
Confidence 664 3345555554 667766543221111111111333344444 5677775422 456777776
No 121
>PRK09039 hypothetical protein; Validated
Probab=94.61 E-value=0.49 Score=45.76 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=21.5
Q ss_pred hHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184 377 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM 422 (469)
Q Consensus 377 l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~ 422 (469)
+..++.+.+....+...++..++.|++.++.++..++..+.+.+++
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~ 166 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKR 166 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444445555555555555555444444433
No 122
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.55 E-value=0.32 Score=42.96 Aligned_cols=49 Identities=22% Similarity=0.317 Sum_probs=19.1
Q ss_pred hhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 012184 379 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 427 (469)
Q Consensus 379 ~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~ 427 (469)
.++++.+..+.+....+..++.++..++.++.+++..+.|+.+-.+..+
T Consensus 102 ~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~ 150 (194)
T PF08614_consen 102 DELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ 150 (194)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444555555555555555555555555554443333
No 123
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.52 E-value=1.3 Score=42.97 Aligned_cols=233 Identities=14% Similarity=0.027 Sum_probs=108.0
Q ss_pred EEEcccCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEc-cccCCCCCcce
Q 012184 2 LLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILG-GHYKKSSDSMI 80 (469)
Q Consensus 2 ~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~G-G~~~~~~~~~~ 80 (469)
+||+|...+. . .++.+|+.+++=.++....+ ....+-..+.-++.||++- + ..
T Consensus 50 llF~s~~dg~--~-nly~lDL~t~~i~QLTdg~g---------------~~~~g~~~s~~~~~~~Yv~~~--------~~ 103 (386)
T PF14583_consen 50 LLFASDFDGN--R-NLYLLDLATGEITQLTDGPG---------------DNTFGGFLSPDDRALYYVKNG--------RS 103 (386)
T ss_dssp EEEEE-TTSS----EEEEEETTT-EEEE---SS----------------B-TTT-EE-TTSSEEEEEETT--------TE
T ss_pred EEEEeccCCC--c-ceEEEEcccCEEEECccCCC---------------CCccceEEecCCCeEEEEECC--------Ce
Confidence 4666654332 2 78999999999999888531 1233434444466776652 3 24
Q ss_pred EEEEECCCCeEEEeecCCCCCCCCcceEEEEEC-CEEEEEecc----CC-------------CCCccCcEEEEECCCCeE
Q 012184 81 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGE----DR-------------SRKLLNDVHFLDLETMTW 142 (469)
Q Consensus 81 ~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyi~GG~----~~-------------~~~~~~~v~~~d~~t~~W 142 (469)
++..|+.|.+=+.+- ..|..-.++...+++ +.-.++|=. .. .......+...|+.+++.
T Consensus 104 l~~vdL~T~e~~~vy---~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~ 180 (386)
T PF14583_consen 104 LRRVDLDTLEERVVY---EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER 180 (386)
T ss_dssp EEEEETTT--EEEEE---E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E
T ss_pred EEEEECCcCcEEEEE---ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce
Confidence 899999998866665 456555555444443 211122211 00 012456788899999998
Q ss_pred EEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCccc-CcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCE-EEE
Q 012184 143 DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFF-NDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN-WYI 220 (469)
Q Consensus 143 ~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~-~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~-l~v 220 (469)
+.+-.. ..--+|...+-.+..+++|.=-+.-... ..||..|.......++.. ..+...++|---.-++. |+.
T Consensus 181 ~~v~~~----~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~--~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 181 KVVFED----TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR--RMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp EEEEEE----SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-----TTEEEEEEEE-TTSS-EEE
T ss_pred eEEEec----CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec--CCCCcccccccccCCCCEEEE
Confidence 877532 1222455555445567777533332233 479999987666655542 23445556655444554 333
Q ss_pred EecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccC
Q 012184 221 VGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN 280 (469)
Q Consensus 221 ~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~ 280 (469)
.+... .+..--+..||+.+..=..+..++ .+.| +..+.++.|+|.-|.+
T Consensus 255 ~~~~~-~~~~~~i~~~d~~t~~~~~~~~~p------~~~H----~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 255 DSYTP-GGQDFWIAGYDPDTGERRRLMEMP------WCSH----FMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEET-TT--EEEEEE-TTT--EEEEEEE-------SEEE----EEE-TTSSEEEEEE--
T ss_pred EeecC-CCCceEEEeeCCCCCCceEEEeCC------ceee----eEEcCCCCEEEecCCC
Confidence 33322 222223667888776534443332 1223 2233367888776653
No 124
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.39 E-value=0.67 Score=44.60 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 012184 432 EVQILRQQKSAFEQEM 447 (469)
Q Consensus 432 e~~~~~q~~~~~~~~~ 447 (469)
+++++..+++....++
T Consensus 245 ~i~~~~~~k~~l~~eI 260 (325)
T PF08317_consen 245 KIEELEEQKQELLAEI 260 (325)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 125
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.39 E-value=0.91 Score=42.36 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=23.5
Q ss_pred hhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184 379 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML 423 (469)
Q Consensus 379 ~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l 423 (469)
+++.+++..+..+..+|.....++...++.+..|..++.++++++
T Consensus 206 ~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~ 250 (306)
T PF04849_consen 206 KQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRC 250 (306)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555555555555443
No 126
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=94.34 E-value=3.9 Score=37.08 Aligned_cols=187 Identities=15% Similarity=0.113 Sum_probs=84.6
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEEC-CEEEEEeccCCCCCccCcEEEEECCCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETM 140 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyi~GG~~~~~~~~~~v~~~d~~t~ 140 (469)
++..+++|+.+ ..+..||+.++...... ..... .-.++.... +.+++.|+. ...+.+||+.+.
T Consensus 62 ~~~~l~~~~~~------~~i~i~~~~~~~~~~~~---~~~~~-~i~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~ 125 (289)
T cd00200 62 DGTYLASGSSD------KTIRLWDLETGECVRTL---TGHTS-YVSSVAFSPDGRILSSSSR------DKTIKVWDVETG 125 (289)
T ss_pred CCCEEEEEcCC------CeEEEEEcCcccceEEE---eccCC-cEEEEEEcCCCCEEEEecC------CCeEEEEECCCc
Confidence 34456665542 23888888875322221 11111 112222222 356665552 335889998865
Q ss_pred eEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEEC-CEEE
Q 012184 141 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID-ENWY 219 (469)
Q Consensus 141 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~l~ 219 (469)
.-...-. .....-.++....++.+++.|..+ +.+.+||+.+..-.... . .....-.++.... +..+
T Consensus 126 ~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~---~-~~~~~i~~~~~~~~~~~l 192 (289)
T cd00200 126 KCLTTLR----GHTDWVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTGKCVATL---T-GHTGEVNSVAFSPDGEKL 192 (289)
T ss_pred EEEEEec----cCCCcEEEEEEcCcCCEEEEEcCC-----CcEEEEEccccccceeE---e-cCccccceEEECCCcCEE
Confidence 5333221 111112223333334455544322 46889998654322111 0 1111122233333 3356
Q ss_pred EEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184 220 IVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP 294 (469)
Q Consensus 220 v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~ 294 (469)
++++. ...+.+||+.+..... ...... .....+...+++.+++.++.++ .+.+||+.+
T Consensus 193 ~~~~~-----~~~i~i~d~~~~~~~~--~~~~~~------~~i~~~~~~~~~~~~~~~~~~~----~i~i~~~~~ 250 (289)
T cd00200 193 LSSSS-----DGTIKLWDLSTGKCLG--TLRGHE------NGVNSVAFSPDGYLLASGSEDG----TIRVWDLRT 250 (289)
T ss_pred EEecC-----CCcEEEEECCCCceec--chhhcC------CceEEEEEcCCCcEEEEEcCCC----cEEEEEcCC
Confidence 66554 2357889987644322 111110 1222333344456666666343 477888754
No 127
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=94.30 E-value=1.9 Score=35.06 Aligned_cols=87 Identities=14% Similarity=0.177 Sum_probs=58.8
Q ss_pred EEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEE-EC
Q 012184 59 VKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFL-DL 137 (469)
Q Consensus 59 ~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~-d~ 137 (469)
+.++|-||..+-. .....+.+.+||+.+.+|+.+..............++.++|+|-++.-........-++|++ |.
T Consensus 2 icinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~ 79 (129)
T PF08268_consen 2 ICINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY 79 (129)
T ss_pred EEECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence 3468888888665 22245669999999999998874211335566777888899988875443322123467887 56
Q ss_pred CCCeEEEeee
Q 012184 138 ETMTWDAVEV 147 (469)
Q Consensus 138 ~t~~W~~~~~ 147 (469)
.+..|.+...
T Consensus 80 ~k~~Wsk~~~ 89 (129)
T PF08268_consen 80 EKQEWSKKHI 89 (129)
T ss_pred ccceEEEEEE
Confidence 6789998754
No 128
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.27 E-value=0.53 Score=42.43 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHHhhhHHHH-------HHHHHHHHHHHHHHHH
Q 012184 392 SKELSSVQGQLVAERSRCFKLEAQIAELQKM----LESSQTIENE-------VQILRQQKSAFEQEME 448 (469)
Q Consensus 392 ~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~----l~~~~~~e~e-------~~~~~q~~~~~~~~~~ 448 (469)
..+...++.+++.+-+.|..+++..+.+... ..++.-+|-+ ++.+.+++.+...+++
T Consensus 59 k~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELE 126 (307)
T PF10481_consen 59 KNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELE 126 (307)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456677777777777777766644443 3333344444 4444444444444444
No 129
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=94.27 E-value=0.29 Score=48.18 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 012184 428 TIENEVQILRQQKSAFEQEM 447 (469)
Q Consensus 428 ~~e~e~~~~~q~~~~~~~~~ 447 (469)
+++.++++++.+++++.+++
T Consensus 120 ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 120 QLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444
No 130
>PRK03629 tolB translocation protein TolB; Provisional
Probab=94.20 E-value=6.9 Score=39.34 Aligned_cols=144 Identities=9% Similarity=0.016 Sum_probs=73.8
Q ss_pred eEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCE-EEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCC
Q 012184 80 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSR-LIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY 156 (469)
Q Consensus 80 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~-lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~ 156 (469)
.+|.+|+.++...++.. .+. ......+ +++ |++..... ....+|.+|+.+..-..+...+ ..
T Consensus 268 ~I~~~d~~tg~~~~lt~---~~~---~~~~~~wSPDG~~I~f~s~~~----g~~~Iy~~d~~~g~~~~lt~~~----~~- 332 (429)
T PRK03629 268 NLYVMDLASGQIRQVTD---GRS---NNTEPTWFPDSQNLAYTSDQA----GRPQVYKVNINGGAPQRITWEG----SQ- 332 (429)
T ss_pred EEEEEECCCCCEEEccC---CCC---CcCceEECCCCCEEEEEeCCC----CCceEEEEECCCCCeEEeecCC----CC-
Confidence 49999999998877752 111 1122222 344 44432211 1347999999888776664221 11
Q ss_pred CceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEE
Q 012184 157 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL 236 (469)
Q Consensus 157 ~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~ 236 (469)
........+++.+++.+.... ...++++|+.++.+..+... .. -...+ ..-++..+++.+.++. ...+++.
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g--~~~I~~~dl~~g~~~~Lt~~--~~--~~~p~-~SpDG~~i~~~s~~~~--~~~l~~~ 403 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGG--QQHIAKQDLATGGVQVLTDT--FL--DETPS-IAPNGTMVIYSSSQGM--GSVLNLV 403 (429)
T ss_pred ccCEEECCCCCEEEEEEccCC--CceEEEEECCCCCeEEeCCC--CC--CCCce-ECCCCCEEEEEEcCCC--ceEEEEE
Confidence 111222224434444332221 24699999999988776521 10 01111 2235666666554322 3456777
Q ss_pred ECCCCcEEEec
Q 012184 237 NMTKLAWSILT 247 (469)
Q Consensus 237 d~~~~~W~~~~ 247 (469)
++....=..++
T Consensus 404 ~~~G~~~~~l~ 414 (429)
T PRK03629 404 STDGRFKARLP 414 (429)
T ss_pred ECCCCCeEECc
Confidence 77654444443
No 131
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=94.19 E-value=2.4 Score=42.65 Aligned_cols=123 Identities=15% Similarity=0.227 Sum_probs=60.2
Q ss_pred CCCCCCceEEEEcCcE-EEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEEC--CEEEEEecCCCCC
Q 012184 152 PAPRYDHSAALHANRY-LIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID--ENWYIVGGGDNNN 228 (469)
Q Consensus 152 p~~r~~~~~~~~~~~~-l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~--~~l~v~GG~~~~~ 228 (469)
-.|+.+..++...-++ ||+.| .+ +++|+||++.+.|-.+-.+ .-...-++.++ +.|+.+||-++
T Consensus 131 RIP~~GRDm~y~~~scDly~~g-sg-----~evYRlNLEqGrfL~P~~~-----~~~~lN~v~in~~hgLla~Gt~~g-- 197 (703)
T KOG2321|consen 131 RIPKFGRDMKYHKPSCDLYLVG-SG-----SEVYRLNLEQGRFLNPFET-----DSGELNVVSINEEHGLLACGTEDG-- 197 (703)
T ss_pred ecCcCCccccccCCCccEEEee-cC-----cceEEEEcccccccccccc-----ccccceeeeecCccceEEecccCc--
Confidence 3455566665543222 55443 32 6899999999999664311 11122233344 45888887433
Q ss_pred CcceEEEEECCCCcEEEeccCCCC---CCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184 229 GCQETIVLNMTKLAWSILTSVKGR---NPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP 294 (469)
Q Consensus 229 ~~~d~~~~d~~~~~W~~~~~~~~~---~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~ 294 (469)
.+..+|+...+-...-..... .|..-...++.++...+++--+-+|-.+| .+++||+..
T Consensus 198 ---~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G----~v~iyDLRa 259 (703)
T KOG2321|consen 198 ---VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG----SVLIYDLRA 259 (703)
T ss_pred ---eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC----cEEEEEccc
Confidence 456667655432211111111 11111222344444443344445554443 477777643
No 132
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=94.14 E-value=0.53 Score=44.99 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHh
Q 012184 412 LEAQIAELQKMLESSQT-IENEVQILRQQKSAFEQEMERA 450 (469)
Q Consensus 412 ~~~~~~e~~~~l~~~~~-~e~e~~~~~q~~~~~~~~~~~~ 450 (469)
|+.+++-++..+...|+ .+.++.+++++....+++++++
T Consensus 258 l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rl 297 (552)
T KOG2129|consen 258 LQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERL 297 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34444444444444442 3334444444444444443333
No 133
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=94.11 E-value=0.18 Score=50.06 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=15.8
Q ss_pred hHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 012184 377 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI 416 (469)
Q Consensus 377 l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~ 416 (469)
|..++++.+..++++++++.+.|.+|.+++..+.+.|.++
T Consensus 105 l~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~ 144 (907)
T KOG2264|consen 105 LNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQL 144 (907)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH
Confidence 3333334444444444444444444444333333333333
No 134
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=94.10 E-value=4.7 Score=37.07 Aligned_cols=159 Identities=14% Similarity=0.059 Sum_probs=88.7
Q ss_pred CCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEE-E--eecCC---CCCCCCcce---EEEEECCEEEEEe
Q 012184 50 LPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCG-V--METSG---KVPVARGGH---SVTLVGSRLIIFG 120 (469)
Q Consensus 50 p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~-~--~~~~g---~~p~~r~~~---~~~~~~~~lyi~G 120 (469)
|.+-.|-..++.++.+|+--. .++.+..||+.++.-. . ++--+ ..|....++ -.++-.+-|+++=
T Consensus 66 p~~~~GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIY 139 (250)
T PF02191_consen 66 PYPWQGTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIY 139 (250)
T ss_pred eceeccCCeEEECCcEEEEec------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEE
Confidence 344456666778888887733 4566999999998755 3 33111 112111222 2333345677775
Q ss_pred ccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecC
Q 012184 121 GEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKG 200 (469)
Q Consensus 121 G~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~ 200 (469)
....+. ..-.+-.+|+.+..-...-.+ ..+.+..+.+.++. +.||++...+... ..-.+.||+.+++=..+..
T Consensus 140 at~~~~-g~ivvskld~~tL~v~~tw~T-~~~k~~~~naFmvC--GvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i-- 212 (250)
T PF02191_consen 140 ATEDNN-GNIVVSKLDPETLSVEQTWNT-SYPKRSAGNAFMVC--GVLYATDSYDTRD-TEIFYAFDTYTGKEEDVSI-- 212 (250)
T ss_pred ecCCCC-CcEEEEeeCcccCceEEEEEe-ccCchhhcceeeEe--eEEEEEEECCCCC-cEEEEEEECCCCceeceee--
Confidence 544322 123356677776543222211 34444444444443 3588887655432 3456899999887665542
Q ss_pred CCCCCCcceEEEEEC---CEEEEE
Q 012184 201 DLVTGRAGHAGITID---ENWYIV 221 (469)
Q Consensus 201 ~~p~~r~~~~~~~~~---~~l~v~ 221 (469)
+.+.+-..+++...+ ..||+.
T Consensus 213 ~f~~~~~~~~~l~YNP~dk~LY~w 236 (250)
T PF02191_consen 213 PFPNPYGNISMLSYNPRDKKLYAW 236 (250)
T ss_pred eeccccCceEeeeECCCCCeEEEE
Confidence 445555566676664 468887
No 135
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.10 E-value=0.66 Score=44.97 Aligned_cols=7 Identities=14% Similarity=0.648 Sum_probs=3.3
Q ss_pred EEEEECC
Q 012184 287 VFVMRLK 293 (469)
Q Consensus 287 ~~~~d~~ 293 (469)
+|.+++.
T Consensus 269 ~yalel~ 275 (493)
T KOG0804|consen 269 CYALELE 275 (493)
T ss_pred eEEEeec
Confidence 4444443
No 136
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.09 E-value=0.58 Score=49.17 Aligned_cols=71 Identities=20% Similarity=0.290 Sum_probs=48.8
Q ss_pred hhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 012184 350 RTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQ 420 (469)
Q Consensus 350 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~ 420 (469)
..++..++.+.+.....+.....+.++|.....++....+.++.+...++.++.+.+.++..+-+...||+
T Consensus 33 ~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselE 103 (717)
T PF09730_consen 33 QQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELE 103 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 34466666666666667777777778888778887777777777777777777777776665544443333
No 137
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.02 E-value=0.46 Score=51.29 Aligned_cols=41 Identities=17% Similarity=0.332 Sum_probs=17.6
Q ss_pred HHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHH
Q 012184 360 KRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG 400 (469)
Q Consensus 360 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~ 400 (469)
++.++..+.+......++...+.+.+..+...+.++.+++.
T Consensus 684 ~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n 724 (1074)
T KOG0250|consen 684 RREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN 724 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333344444444444444444444444444444444444
No 138
>PRK02889 tolB translocation protein TolB; Provisional
Probab=93.85 E-value=8 Score=38.83 Aligned_cols=181 Identities=9% Similarity=-0.008 Sum_probs=88.0
Q ss_pred ceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CC-EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCC
Q 012184 79 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR 155 (469)
Q Consensus 79 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r 155 (469)
..+|.+|+.++.=..+. ..+.. .....+ ++ +|++....+. ..++|.+|+.+.....+... . ..
T Consensus 220 ~~I~~~dl~~g~~~~l~---~~~g~---~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~-~~ 285 (427)
T PRK02889 220 PVVYVHDLATGRRRVVA---NFKGS---NSAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQS---S-GI 285 (427)
T ss_pred cEEEEEECCCCCEEEee---cCCCC---ccceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCCC---C-CC
Confidence 35999999988755554 22211 112222 33 5554433222 45799999988776655321 1 11
Q ss_pred CCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEE-ECCEEEEEecCCCCCCcceEE
Q 012184 156 YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT-IDENWYIVGGGDNNNGCQETI 234 (469)
Q Consensus 156 ~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~d~~ 234 (469)
. .......|++.++|..... ....+|.+++.+.....+...+ ........ -+++.+++....+. ...++
T Consensus 286 ~-~~~~wSpDG~~l~f~s~~~--g~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~~g--~~~I~ 355 (427)
T PRK02889 286 D-TEPFFSPDGRSIYFTSDRG--GAPQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLAYISRVGG--AFKLY 355 (427)
T ss_pred C-cCeEEcCCCCEEEEEecCC--CCcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEEEEEccCC--cEEEE
Confidence 1 1122223443334432211 1257899998887776664211 11111122 23444334332211 23789
Q ss_pred EEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184 235 VLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP 294 (469)
Q Consensus 235 ~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~ 294 (469)
++|+.+.....+..... .. ...+ .+++..+++....+. ...++.++.+.
T Consensus 356 v~d~~~g~~~~lt~~~~-------~~-~p~~--spdg~~l~~~~~~~g-~~~l~~~~~~g 404 (427)
T PRK02889 356 VQDLATGQVTALTDTTR-------DE-SPSF--APNGRYILYATQQGG-RSVLAAVSSDG 404 (427)
T ss_pred EEECCCCCeEEccCCCC-------cc-CceE--CCCCCEEEEEEecCC-CEEEEEEECCC
Confidence 99998888776642111 11 1122 234455555543322 34577777743
No 139
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=93.84 E-value=0.44 Score=41.34 Aligned_cols=56 Identities=25% Similarity=0.327 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHH
Q 012184 393 KELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEME 448 (469)
Q Consensus 393 ~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~----~~e~e~~~~~q~~~~~~~~~~ 448 (469)
..+...-.+|.+++.++..|.+...-|.++++.+. .|..+++.+..+...+.++++
T Consensus 60 ~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 60 PDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777788888888887777776776666555 466677776666666655555
No 140
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.69 E-value=1.6 Score=42.61 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=22.2
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHH
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE 394 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~e 394 (469)
..++...+.+....+.....+....++.++..+.++..+..+
T Consensus 152 ~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~e 193 (420)
T COG4942 152 YGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSE 193 (420)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555554443333
No 141
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=93.68 E-value=2.5 Score=32.56 Aligned_cols=63 Identities=27% Similarity=0.382 Sum_probs=38.0
Q ss_pred HHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 012184 356 IKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES 425 (469)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~ 425 (469)
+++....++..+........+|.. +..+++..++.++.+......++.+++.++.|+.+.+..
T Consensus 14 l~n~La~Le~slE~~K~S~~eL~k-------qkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 14 LQNRLASLERSLEDEKTSQGELAK-------QKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444432 333355566677777777778888888888887777655
No 142
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=93.66 E-value=1.5 Score=40.05 Aligned_cols=78 Identities=28% Similarity=0.377 Sum_probs=40.9
Q ss_pred hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHH
Q 012184 373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAE-------RSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKS 441 (469)
Q Consensus 373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~-------~~~~~~~~~~~~e~~~~l~~~~----~~e~e~~~~~q~~~ 441 (469)
+..+....++..+..+.+++.++..+...+..+ .++...++.++..|..++...+ ..++.+..+++++.
T Consensus 128 ~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id 207 (237)
T PF00261_consen 128 ELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEID 207 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444455555555555544444433 3444555555556666654444 45566666666666
Q ss_pred HHHHHHHHh
Q 012184 442 AFEQEMERA 450 (469)
Q Consensus 442 ~~~~~~~~~ 450 (469)
.++.++...
T Consensus 208 ~le~eL~~~ 216 (237)
T PF00261_consen 208 RLEDELEKE 216 (237)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666543
No 143
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=93.59 E-value=1.3 Score=40.78 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184 392 SKELSSVQGQLVAERSRCFKLEAQIAELQKML 423 (469)
Q Consensus 392 ~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l 423 (469)
.++++.++..+.+++..+..+++++.++++++
T Consensus 62 ~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi 93 (251)
T PF11932_consen 62 EREIENLEVYNEQLERQVASQEQELASLEQQI 93 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 144
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.58 E-value=1.7 Score=36.62 Aligned_cols=42 Identities=19% Similarity=0.406 Sum_probs=17.0
Q ss_pred hhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012184 376 RFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIA 417 (469)
Q Consensus 376 ~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~ 417 (469)
++...++..+..++.++.+++..+.++...+.++..++.++.
T Consensus 63 ~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~ 104 (151)
T PF11559_consen 63 RLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLK 104 (151)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444443333
No 145
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=93.57 E-value=0.76 Score=52.48 Aligned_cols=62 Identities=15% Similarity=0.289 Sum_probs=32.2
Q ss_pred hHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHH
Q 012184 352 DIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLE 413 (469)
Q Consensus 352 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~ 413 (469)
..+.++.+...++..+.......+.++..+......+.++.+++.+.+.++++.+..+..++
T Consensus 601 ~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 662 (1201)
T PF12128_consen 601 SEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLK 662 (1201)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34455555555555555555555555555555555555555555554444444444443333
No 146
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.56 E-value=1.1 Score=41.60 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=14.3
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHH
Q 012184 380 KIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEA 414 (469)
Q Consensus 380 ~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~ 414 (469)
+.++++...+++..+|-..+.-+.+.+.+.+.+|.
T Consensus 100 e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~ 134 (401)
T PF06785_consen 100 ESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEG 134 (401)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 33333444444444444444433333333333333
No 147
>smart00284 OLF Olfactomedin-like domains.
Probab=93.36 E-value=6.3 Score=36.14 Aligned_cols=194 Identities=14% Similarity=0.020 Sum_probs=98.6
Q ss_pred CCEEEEEccccCCCCCcceEEEEE----CCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEEC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFID----LETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDL 137 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d----~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~ 137 (469)
.+++|+..+... ..+.+..|. +..+.+...- .+|.+-.|.+.+++++.||+--. .++.|..||+
T Consensus 34 ~~~~wv~~~~~~---~~~~v~ey~~~~~f~~~~~~~~~---~Lp~~~~GtG~VVYngslYY~~~------~s~~iiKydL 101 (255)
T smart00284 34 KSLYWYMPLNTR---VLRSVREYSSMSDFQMGKNPTDH---PLPHAGQGTGVVVYNGSLYFNKF------NSHDICRFDL 101 (255)
T ss_pred CceEEEEccccC---CCcEEEEecCHHHHhccCCceEE---ECCCccccccEEEECceEEEEec------CCccEEEEEC
Confidence 567888766531 123355652 3344443332 46777888889999999998532 2567999999
Q ss_pred CCCeEEEeeeC-C-----CCCC---CCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcc
Q 012184 138 ETMTWDAVEVT-Q-----TPPA---PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAG 208 (469)
Q Consensus 138 ~t~~W~~~~~~-g-----~~p~---~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~ 208 (469)
.+.+-...... + ..|- +-...-.++..++ |+++=....+.-.--+-.+|+.+-.-+..-.+ ..+.+..+
T Consensus 102 ~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~G-LWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T-~~~k~sa~ 179 (255)
T smart00284 102 TTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENG-LWVIYATEQNAGKIVISKLNPATLTIENTWIT-TYNKRSAS 179 (255)
T ss_pred CCCcEEEEEecCccccccccccccCCCccEEEEEcCCc-eEEEEeccCCCCCEEEEeeCcccceEEEEEEc-CCCccccc
Confidence 99876533311 0 1111 1111233444345 66553322211111234666665442221111 33333333
Q ss_pred eEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcC-CcEEEEE
Q 012184 209 HAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAF 276 (469)
Q Consensus 209 ~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~ 276 (469)
.+.++-+.||++-.. ......-.+.||+.+.+=.. ..++-+. +++ ....+-.++ +..||+.
T Consensus 180 -naFmvCGvLY~~~s~-~~~~~~I~yayDt~t~~~~~-~~i~f~n---~y~-~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 180 -NAFMICGILYVTRSL-GSKGEKVFYAYDTNTGKEGH-LDIPFEN---MYE-YISMLDYNPNDRKLYAW 241 (255)
T ss_pred -ccEEEeeEEEEEccC-CCCCcEEEEEEECCCCccce-eeeeecc---ccc-cceeceeCCCCCeEEEE
Confidence 455566899988431 11122336899998765332 2222221 222 233334455 6778765
No 148
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=93.35 E-value=1.1 Score=41.05 Aligned_cols=13 Identities=23% Similarity=0.312 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 012184 429 IENEVQILRQQKS 441 (469)
Q Consensus 429 ~e~e~~~~~q~~~ 441 (469)
.+.|...+++++.
T Consensus 101 ke~Ea~~lq~el~ 113 (246)
T PF00769_consen 101 KEEEAEELQEELE 113 (246)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 149
>PTZ00421 coronin; Provisional
Probab=93.33 E-value=11 Score=38.67 Aligned_cols=156 Identities=14% Similarity=0.106 Sum_probs=70.5
Q ss_pred CEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCC
Q 012184 63 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM 140 (469)
Q Consensus 63 ~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~ 140 (469)
+.+++.||.+. .+..+|+.++.-...- . ... .....+.+ ++.+++.|+.+. .+.+||+.++
T Consensus 138 ~~iLaSgs~Dg------tVrIWDl~tg~~~~~l-~-~h~---~~V~sla~spdG~lLatgs~Dg------~IrIwD~rsg 200 (493)
T PTZ00421 138 MNVLASAGADM------VVNVWDVERGKAVEVI-K-CHS---DQITSLEWNLDGSLLCTTSKDK------KLNIIDPRDG 200 (493)
T ss_pred CCEEEEEeCCC------EEEEEECCCCeEEEEE-c-CCC---CceEEEEEECCCCEEEEecCCC------EEEEEECCCC
Confidence 45777776532 3888898877532221 0 011 11112222 466777776543 3888999876
Q ss_pred eEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEE
Q 012184 141 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENW 218 (469)
Q Consensus 141 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l 218 (469)
.-.. ...+. ...+.. .+....++..++..|.+.. .-+.+.+||+.+..-. +... .... .....+..+ ++.+
T Consensus 201 ~~v~-tl~~H-~~~~~~-~~~w~~~~~~ivt~G~s~s-~Dr~VklWDlr~~~~p-~~~~-~~d~-~~~~~~~~~d~d~~~ 273 (493)
T PTZ00421 201 TIVS-SVEAH-ASAKSQ-RCLWAKRKDLIITLGCSKS-QQRQIMLWDTRKMASP-YSTV-DLDQ-SSALFIPFFDEDTNL 273 (493)
T ss_pred cEEE-EEecC-CCCcce-EEEEcCCCCeEEEEecCCC-CCCeEEEEeCCCCCCc-eeEe-ccCC-CCceEEEEEcCCCCE
Confidence 5321 11111 111111 1222223224444443221 1256888998654311 1100 1111 111222233 4556
Q ss_pred EEEecCCCCCCcceEEEEECCCCcEEEe
Q 012184 219 YIVGGGDNNNGCQETIVLNMTKLAWSIL 246 (469)
Q Consensus 219 ~v~GG~~~~~~~~d~~~~d~~~~~W~~~ 246 (469)
+++||.. -..+.+||+.+......
T Consensus 274 L~lggkg----Dg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 274 LYIGSKG----EGNIRCFELMNERLTFC 297 (493)
T ss_pred EEEEEeC----CCeEEEEEeeCCceEEE
Confidence 6666621 12477888877665443
No 150
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=93.30 E-value=0.69 Score=50.20 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=38.8
Q ss_pred hhhhhHhhhhhhhcchhh-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184 373 ENSRFREKIDEVNSTHSE-LSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAF 443 (469)
Q Consensus 373 ~~~~l~~~~~~~~~~~~e-~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~ 443 (469)
....++.++++++..+.+ +.+-+..++.+.+..+.++..++.++++++++.......+.|+.+++++.+..
T Consensus 317 ~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~ 388 (754)
T TIGR01005 317 RVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAK 388 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHH
Confidence 344555555555554332 33333445555666666666777777777766655555555555555554433
No 151
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=93.29 E-value=2.2 Score=36.00 Aligned_cols=59 Identities=25% Similarity=0.359 Sum_probs=33.8
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHH
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFK 411 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~ 411 (469)
+..+...+.++-.+-...+.+.+.+++++++.+..+.+.-.+...++......+.++.+
T Consensus 8 i~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~e 66 (159)
T PF05384_consen 8 IDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAE 66 (159)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555556666666777777777766666665555555555444444444433
No 152
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=93.28 E-value=6.2 Score=35.76 Aligned_cols=177 Identities=15% Similarity=0.093 Sum_probs=78.8
Q ss_pred CEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEEC-CEEEEEeccCCCCCccCcEEEEECCCCe
Q 012184 63 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMT 141 (469)
Q Consensus 63 ~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyi~GG~~~~~~~~~~v~~~d~~t~~ 141 (469)
+.+++.|+.. ..+..||+.+..-...-. .....-.++.... +.+++.|+ . ...+.+||+.+..
T Consensus 105 ~~~~~~~~~~------~~i~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~-~-----~~~i~i~d~~~~~ 168 (289)
T cd00200 105 GRILSSSSRD------KTIKVWDVETGKCLTTLR----GHTDWVNSVAFSPDGTFVASSS-Q-----DGTIKLWDLRTGK 168 (289)
T ss_pred CCEEEEecCC------CeEEEEECCCcEEEEEec----cCCCcEEEEEEcCcCCEEEEEc-C-----CCcEEEEEccccc
Confidence 4566665522 238889988655333221 1111112222223 34444443 1 2348889987544
Q ss_pred EEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEEC-CEEEE
Q 012184 142 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID-ENWYI 220 (469)
Q Consensus 142 W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~l~v 220 (469)
-...-. .....-.++....++..+++++.+ +.+.+||+.+....... . .....-.++.... +.+++
T Consensus 169 ~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~--~--~~~~~i~~~~~~~~~~~~~ 235 (289)
T cd00200 169 CVATLT----GHTGEVNSVAFSPDGEKLLSSSSD-----GTIKLWDLSTGKCLGTL--R--GHENGVNSVAFSPDGYLLA 235 (289)
T ss_pred cceeEe----cCccccceEEECCCcCEEEEecCC-----CcEEEEECCCCceecch--h--hcCCceEEEEEcCCCcEEE
Confidence 222111 011112233333344455555542 56889998764433211 0 1111222333333 34555
Q ss_pred EecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCC
Q 012184 221 VGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG 281 (469)
Q Consensus 221 ~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~ 281 (469)
.++.+ ..+.+||+.+..-. ..+.... .....+...+++.+++.++.++
T Consensus 236 ~~~~~-----~~i~i~~~~~~~~~--~~~~~~~------~~i~~~~~~~~~~~l~~~~~d~ 283 (289)
T cd00200 236 SGSED-----GTIRVWDLRTGECV--QTLSGHT------NSVTSLAWSPDGKRLASGSADG 283 (289)
T ss_pred EEcCC-----CcEEEEEcCCceeE--EEccccC------CcEEEEEECCCCCEEEEecCCC
Confidence 54422 35788888754322 1222111 1233333444446677777655
No 153
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.23 E-value=1 Score=46.31 Aligned_cols=53 Identities=23% Similarity=0.364 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184 391 LSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAF 443 (469)
Q Consensus 391 ~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~ 443 (469)
+...+...+.++..++.++..+++++++++++.......+.++..++++.+..
T Consensus 315 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~ 367 (498)
T TIGR03007 315 LQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVN 367 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 44556666666666677777777777777777665555555555555555433
No 154
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=93.22 E-value=1.2 Score=41.09 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=15.5
Q ss_pred hHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012184 377 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIA 417 (469)
Q Consensus 377 l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~ 417 (469)
+..++..++.+++.++.+.++++..+...++++.++++++.
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~ 94 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIE 94 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 155
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.21 E-value=2.5 Score=34.81 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=8.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHH
Q 012184 396 SSVQGQLVAERSRCFKLEAQI 416 (469)
Q Consensus 396 ~~~~~~l~~~~~~~~~~~~~~ 416 (469)
..+.+.+++.++++.+|+...
T Consensus 83 ~~L~k~lq~~q~kv~eLE~~~ 103 (140)
T PF10473_consen 83 ENLDKELQKKQEKVSELESLN 103 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333333444444444444333
No 156
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.17 E-value=2.4 Score=36.55 Aligned_cols=6 Identities=33% Similarity=0.589 Sum_probs=2.2
Q ss_pred HHHHHH
Q 012184 441 SAFEQE 446 (469)
Q Consensus 441 ~~~~~~ 446 (469)
..++++
T Consensus 182 s~LEeq 187 (193)
T PF14662_consen 182 SRLEEQ 187 (193)
T ss_pred HHHHHH
Confidence 333333
No 157
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.12 E-value=0.48 Score=41.26 Aligned_cols=71 Identities=21% Similarity=0.380 Sum_probs=41.7
Q ss_pred hhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHH
Q 012184 369 EVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS----QTIENEVQILRQQ 439 (469)
Q Consensus 369 ~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~----~~~e~e~~~~~q~ 439 (469)
+.+...+.++.++++...+.+++.+++.+++.++...++++..++.+...|.+.+... .+|++...++...
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 3444555566666666666777777777777777777777766666555444443322 2455555444444
No 158
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.11 E-value=0.55 Score=41.45 Aligned_cols=74 Identities=18% Similarity=0.231 Sum_probs=24.2
Q ss_pred hHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 012184 352 DIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES 425 (469)
Q Consensus 352 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~ 425 (469)
++..+...+.++...+.....+...++.++.+....+.+++.++..++.++..+.+.+.+.+..++.++.++..
T Consensus 82 ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~ 155 (194)
T PF08614_consen 82 ELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQA 155 (194)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555666666666666666666666666666666666655555555555544444433
No 159
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=93.05 E-value=0.92 Score=44.18 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=24.0
Q ss_pred hhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 012184 374 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI 416 (469)
Q Consensus 374 ~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~ 416 (469)
...++.+.++.--.++.+..+++.++.+++.++++++.|..++
T Consensus 318 ~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 318 VNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQL 360 (622)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3344444444444555555666666666666666666655544
No 160
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.02 E-value=1 Score=43.99 Aligned_cols=68 Identities=16% Similarity=0.332 Sum_probs=40.3
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQ 420 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~ 420 (469)
+.+++.+...++..+.....+..+|+.++.+.++++..+++++.+....+.+.+.++.+++..+..++
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 44445555555555556666666666666666666666666666666666666655555555444333
No 161
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.98 E-value=1.1 Score=46.66 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=32.8
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHH
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLV 403 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~ 403 (469)
...++.+...|+..+.....+...|+.+.......++++++.|.+++.+++
T Consensus 17 a~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~ 67 (617)
T PF15070_consen 17 AQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMA 67 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555666666666666666666666666666666666666666666665544
No 162
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=92.94 E-value=10 Score=37.27 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=24.5
Q ss_pred CcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCC
Q 012184 130 NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS 177 (469)
Q Consensus 130 ~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~ 177 (469)
+.+-+||++.+.--. ....|+.-+++++...++.+.+|+..+.
T Consensus 198 ~t~k~wdlS~g~LLl-----ti~fp~si~av~lDpae~~~yiGt~~G~ 240 (476)
T KOG0646|consen 198 RTIKLWDLSLGVLLL-----TITFPSSIKAVALDPAERVVYIGTEEGK 240 (476)
T ss_pred ceEEEEEeccceeeE-----EEecCCcceeEEEcccccEEEecCCcce
Confidence 347778888775322 2234555566666544556666665543
No 163
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.92 E-value=8.6 Score=36.44 Aligned_cols=203 Identities=12% Similarity=0.127 Sum_probs=91.5
Q ss_pred CeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEE
Q 012184 55 DHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVH 133 (469)
Q Consensus 55 ~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~ 133 (469)
.+++...++..|+.|-. . .++.-.=.-.+|.+++.. .+.+-..+.+..+ ++.++++|.. ..||
T Consensus 64 l~~I~f~~~~g~ivG~~---g----~ll~T~DgG~tW~~v~l~--~~lpgs~~~i~~l~~~~~~l~~~~-------G~iy 127 (302)
T PF14870_consen 64 LNSISFDGNEGWIVGEP---G----LLLHTTDGGKTWERVPLS--SKLPGSPFGITALGDGSAELAGDR-------GAIY 127 (302)
T ss_dssp EEEEEEETTEEEEEEET---T----EEEEESSTTSS-EE------TT-SS-EEEEEEEETTEEEEEETT---------EE
T ss_pred EEEEEecCCceEEEcCC---c----eEEEecCCCCCcEEeecC--CCCCCCeeEEEEcCCCcEEEEcCC-------CcEE
Confidence 44555568899988632 1 122222235579998742 2333344445554 4567776532 2365
Q ss_pred EEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEE
Q 012184 134 FLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT 213 (469)
Q Consensus 134 ~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~ 213 (469)
+=.-.-.+|+.+... ..-....+....++.+++++..+ +-+...|+-...|.... .+..|.-.++..
T Consensus 128 ~T~DgG~tW~~~~~~----~~gs~~~~~r~~dG~~vavs~~G-----~~~~s~~~G~~~w~~~~----r~~~~riq~~gf 194 (302)
T PF14870_consen 128 RTTDGGKTWQAVVSE----TSGSINDITRSSDGRYVAVSSRG-----NFYSSWDPGQTTWQPHN----RNSSRRIQSMGF 194 (302)
T ss_dssp EESSTTSSEEEEE-S--------EEEEEE-TTS-EEEEETTS-----SEEEEE-TT-SS-EEEE------SSS-EEEEEE
T ss_pred EeCCCCCCeeEcccC----CcceeEeEEECCCCcEEEEECcc-----cEEEEecCCCccceEEc----cCccceehhcee
Confidence 555456799987531 12222334445577666666432 12234566667798864 345566666665
Q ss_pred E-CCEEEEEecCCCCCCcceEEEEE--CCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEE
Q 012184 214 I-DENWYIVGGGDNNNGCQETIVLN--MTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVM 290 (469)
Q Consensus 214 ~-~~~l~v~GG~~~~~~~~d~~~~d--~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~ 290 (469)
. ++.++++.= +. .+..-+ -....|.+.. . |....++.+..+...+.+.+++.||.. .+++=
T Consensus 195 ~~~~~lw~~~~--Gg----~~~~s~~~~~~~~w~~~~-~----~~~~~~~~~ld~a~~~~~~~wa~gg~G-----~l~~S 258 (302)
T PF14870_consen 195 SPDGNLWMLAR--GG----QIQFSDDPDDGETWSEPI-I----PIKTNGYGILDLAYRPPNEIWAVGGSG-----TLLVS 258 (302)
T ss_dssp -TTS-EEEEET--TT----EEEEEE-TTEEEEE---B------TTSS--S-EEEEEESSSS-EEEEESTT------EEEE
T ss_pred cCCCCEEEEeC--Cc----EEEEccCCCCcccccccc-C----CcccCceeeEEEEecCCCCEEEEeCCc-----cEEEe
Confidence 5 456666631 00 333333 3455676621 1 223345665566666678899999843 24433
Q ss_pred ECCCCCCCCccc
Q 012184 291 RLKPRDIPRPKI 302 (469)
Q Consensus 291 d~~~~~w~~~~~ 302 (469)
.=..++|.+...
T Consensus 259 ~DgGktW~~~~~ 270 (302)
T PF14870_consen 259 TDGGKTWQKDRV 270 (302)
T ss_dssp SSTTSS-EE-GG
T ss_pred CCCCccceECcc
Confidence 334567876543
No 164
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.90 E-value=2 Score=41.06 Aligned_cols=71 Identities=25% Similarity=0.405 Sum_probs=36.3
Q ss_pred HhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHH
Q 012184 378 REKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES--------SQTIENEVQILRQQKSAFEQEME 448 (469)
Q Consensus 378 ~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~--------~~~~e~e~~~~~q~~~~~~~~~~ 448 (469)
...+...+.++.+++..++.++.++..++.+...|+.++.+++.+... +..++.++.+++.+.++..++.+
T Consensus 208 ~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~ 286 (312)
T PF00038_consen 208 SEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQ 286 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Confidence 333444445555555555556655655555556666665555444322 22455555555555554444433
No 165
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=92.80 E-value=0.66 Score=45.82 Aligned_cols=23 Identities=9% Similarity=0.387 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 012184 428 TIENEVQILRQQKSAFEQEMERA 450 (469)
Q Consensus 428 ~~e~e~~~~~q~~~~~~~~~~~~ 450 (469)
++++|++++.++++++...++++
T Consensus 113 ~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 113 ELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 166
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=92.69 E-value=2.2 Score=39.81 Aligned_cols=10 Identities=20% Similarity=0.567 Sum_probs=3.8
Q ss_pred HHHHHHhHHH
Q 012184 353 IDAIKEDKRV 362 (469)
Q Consensus 353 ~~~l~~~~~~ 362 (469)
+..++.++..
T Consensus 86 l~~l~keKe~ 95 (310)
T PF09755_consen 86 LQQLKKEKET 95 (310)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 167
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.62 E-value=1.8 Score=34.68 Aligned_cols=90 Identities=24% Similarity=0.303 Sum_probs=42.4
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----HHhhh
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML----ESSQT 428 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l----~~~~~ 428 (469)
++.|+...+.++..+...+.+..++..+-+++..++-.+..+... +.....+...++.++++++++. +..-+
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~----~~~~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEE----LRALKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 555555555554444444444444443333333333333332222 2333445556666666666663 33334
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012184 429 IENEVQILRQQKSAFEQE 446 (469)
Q Consensus 429 ~e~e~~~~~q~~~~~~~~ 446 (469)
...++++++.-++.+..-
T Consensus 94 K~E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 94 KSEEVEELRADVQDLKEM 111 (120)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 555666666655554443
No 168
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=92.60 E-value=3.9 Score=35.58 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=14.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 012184 419 LQKMLESSQTIENEVQILRQQKSAFEQEME 448 (469)
Q Consensus 419 ~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~ 448 (469)
+.++-+.++.-.+.++.|.+++.....+++
T Consensus 139 l~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~ 168 (188)
T PF05335_consen 139 LAEKTQLLEAAKRRVEELQRQLQAARADYE 168 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344455555555555444443
No 169
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=92.42 E-value=1.2 Score=41.11 Aligned_cols=24 Identities=17% Similarity=0.022 Sum_probs=10.9
Q ss_pred HHhhcccccccCcccccccccCCC
Q 012184 318 AYALAKSEKLDIPKTLSSKFAGIG 341 (469)
Q Consensus 318 ~~~~gg~~~~~~~~~~~~~~~~~~ 341 (469)
++.|+.-.+.+...+......+..
T Consensus 23 ~iLfalLIwgS~~~~~e~~~gG~g 46 (387)
T COG3064 23 IILFALLIWGSLDETIEASGGGGG 46 (387)
T ss_pred HHHHHHHHHhhhhhcccccCCCCC
Confidence 344444444444444444444433
No 170
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.37 E-value=1.7 Score=43.24 Aligned_cols=70 Identities=19% Similarity=0.322 Sum_probs=44.2
Q ss_pred hHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 012184 352 DIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQK 421 (469)
Q Consensus 352 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~ 421 (469)
.+-.|+++...+...+...+.+.+++....++..+..+.++-+-..++.++...+.|+..+-+...||++
T Consensus 108 kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEE 177 (772)
T KOG0999|consen 108 KILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEE 177 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666667777777777777777766666666666666666666666666555444444433
No 171
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.34 E-value=0.66 Score=42.33 Aligned_cols=10 Identities=30% Similarity=0.345 Sum_probs=5.1
Q ss_pred cCCCceeEee
Q 012184 456 QGSGGVWRWI 465 (469)
Q Consensus 456 q~~~~~~~~~ 465 (469)
|..||.=.||
T Consensus 111 q~nG~~t~Yi 120 (265)
T COG3883 111 QVNGTATSYI 120 (265)
T ss_pred HHcCChhHHH
Confidence 5555554444
No 172
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=92.33 E-value=2.3 Score=41.30 Aligned_cols=46 Identities=20% Similarity=0.393 Sum_probs=25.7
Q ss_pred cchhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHH
Q 012184 347 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELS 392 (469)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~ 392 (469)
++.+..+++++.-...++..+...+....++...+...-+.+...+
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sRE 261 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESRE 261 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344446667666666666666666666666555555444443333
No 173
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=92.26 E-value=2.7 Score=37.47 Aligned_cols=27 Identities=7% Similarity=0.268 Sum_probs=11.3
Q ss_pred hHhhhhhhhcchhhHHHHHHHHHHHHH
Q 012184 377 FREKIDEVNSTHSELSKELSSVQGQLV 403 (469)
Q Consensus 377 l~~~~~~~~~~~~e~~~el~~~~~~l~ 403 (469)
|..++++++.++.+++.+.+++.-++.
T Consensus 50 lesqL~q~etrnrdl~t~nqrl~~E~e 76 (333)
T KOG1853|consen 50 LESQLDQLETRNRDLETRNQRLTTEQE 76 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333333
No 174
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=92.18 E-value=2.3 Score=36.63 Aligned_cols=85 Identities=13% Similarity=0.187 Sum_probs=39.7
Q ss_pred hhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 012184 372 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERAT 451 (469)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~~~~ 451 (469)
....+|+.+.+..++.+.+-+...+.++..+...+++..+.....++. .++.+.|+.|....+.++.++.+++ .
T Consensus 105 irR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~---r~ea~aL~~e~~aaqaQL~~lQ~qv---~ 178 (192)
T PF11180_consen 105 IRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQA---RQEAQALEAERRAAQAQLRQLQRQV---R 178 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 333344444444444444444444444444444333322222221111 2233345556666666666665555 3
Q ss_pred hhcccCCCcee
Q 012184 452 SVQTQGSGGVW 462 (469)
Q Consensus 452 ~~q~q~~~~~~ 462 (469)
++|+|...++|
T Consensus 179 ~Lq~q~~~~~~ 189 (192)
T PF11180_consen 179 QLQRQANEPIP 189 (192)
T ss_pred HHHHHhcCCCC
Confidence 45666666666
No 175
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.12 E-value=0.72 Score=46.26 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=18.8
Q ss_pred hhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184 384 VNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML 423 (469)
Q Consensus 384 ~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l 423 (469)
++...+..+..+..++.+.....+.++.++.+..+|+.++
T Consensus 285 ~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 285 MKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444455555555555555553
No 176
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.08 E-value=2.1 Score=46.73 Aligned_cols=10 Identities=0% Similarity=-0.273 Sum_probs=4.0
Q ss_pred chhhhHHHhh
Q 012184 312 AASVTAAYAL 321 (469)
Q Consensus 312 ~~~~~~~~~~ 321 (469)
+.+...++.-
T Consensus 741 vTL~G~lIe~ 750 (1293)
T KOG0996|consen 741 VTLDGSLIEK 750 (1293)
T ss_pred EEecceeecc
Confidence 3333444433
No 177
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.01 E-value=1.7 Score=46.27 Aligned_cols=48 Identities=21% Similarity=0.434 Sum_probs=28.8
Q ss_pred hhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHH
Q 012184 351 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSV 398 (469)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~ 398 (469)
.+.+.++.++..++..+.....+.+.++.++++.+..+.+++.++...
T Consensus 596 eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~ 643 (769)
T PF05911_consen 596 EELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESA 643 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666666666666655555555543
No 178
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.00 E-value=1.2 Score=41.64 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=48.6
Q ss_pred HHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184 362 VLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML 423 (469)
Q Consensus 362 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l 423 (469)
..++.+.....+.+.+++.-+++.+-.++++.+++.++++++.++..++-|...++|..++.
T Consensus 222 r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~ 283 (365)
T KOG2391|consen 222 RREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKA 283 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 33556666777777888888888888888888888899999999888888888888744443
No 179
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=91.99 E-value=1.2 Score=41.36 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=11.7
Q ss_pred hhhcchhhHHHHHHHHHHHHHHhhhHH
Q 012184 383 EVNSTHSELSKELSSVQGQLVAERSRC 409 (469)
Q Consensus 383 ~~~~~~~e~~~el~~~~~~l~~~~~~~ 409 (469)
.++..+..+++|-+.++.+|+..++.+
T Consensus 131 ~LE~li~~~~EEn~~lqlqL~~l~~e~ 157 (401)
T PF06785_consen 131 HLEGLIRHLREENQCLQLQLDALQQEC 157 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333344444444444444444444333
No 180
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=91.97 E-value=1.4 Score=51.58 Aligned_cols=46 Identities=22% Similarity=0.344 Sum_probs=19.0
Q ss_pred HhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184 378 REKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML 423 (469)
Q Consensus 378 ~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l 423 (469)
++++.+++..+.++..+++..+....+++....++..+++++++++
T Consensus 1096 ~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~L 1141 (1930)
T KOG0161|consen 1096 QKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEEL 1141 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444444444444444443
No 181
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=91.86 E-value=1.4 Score=38.52 Aligned_cols=21 Identities=38% Similarity=0.409 Sum_probs=9.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHH
Q 012184 403 VAERSRCFKLEAQIAELQKML 423 (469)
Q Consensus 403 ~~~~~~~~~~~~~~~e~~~~l 423 (469)
+-+++++..++.++.+++..+
T Consensus 83 ~lLrekl~~le~El~~Lr~~l 103 (202)
T PF06818_consen 83 ELLREKLGQLEAELAELREEL 103 (202)
T ss_pred HHhhhhhhhhHHHHHHHHHHH
Confidence 333444444444444444443
No 182
>PTZ00421 coronin; Provisional
Probab=91.71 E-value=17 Score=37.18 Aligned_cols=63 Identities=16% Similarity=0.128 Sum_probs=35.0
Q ss_pred EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc
Q 012184 115 RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE 192 (469)
Q Consensus 115 ~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~ 192 (469)
.+++.||.+. .+.+||+.+..-...- . .... .-.++....++.+++.|+.+ ..+.+||+.+..
T Consensus 139 ~iLaSgs~Dg------tVrIWDl~tg~~~~~l-~-~h~~--~V~sla~spdG~lLatgs~D-----g~IrIwD~rsg~ 201 (493)
T PTZ00421 139 NVLASAGADM------VVNVWDVERGKAVEVI-K-CHSD--QITSLEWNLDGSLLCTTSKD-----KKLNIIDPRDGT 201 (493)
T ss_pred CEEEEEeCCC------EEEEEECCCCeEEEEE-c-CCCC--ceEEEEEECCCCEEEEecCC-----CEEEEEECCCCc
Confidence 5666666543 3888998876532211 1 1111 11223333356677777654 358899988765
No 183
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.71 E-value=4.8 Score=36.85 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=11.0
Q ss_pred hhhhhHhhhhhhhcchhhHHHHHHHHHHHH
Q 012184 373 ENSRFREKIDEVNSTHSELSKELSSVQGQL 402 (469)
Q Consensus 373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l 402 (469)
+...+..++++.+.++.+...++.+++.++
T Consensus 60 qi~~~~~k~~~~~~~i~~~~~eik~l~~eI 89 (265)
T COG3883 60 QIEEIQSKIDELQKEIDQSKAEIKKLQKEI 89 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 184
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=91.71 E-value=9.3 Score=34.42 Aligned_cols=138 Identities=18% Similarity=0.217 Sum_probs=69.3
Q ss_pred eEEEeecC--CCCCCCCcceEEEE-ECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCc
Q 012184 90 LCGVMETS--GKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANR 166 (469)
Q Consensus 90 ~W~~~~~~--g~~p~~r~~~~~~~-~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~ 166 (469)
-|+..++. +..+.|-...-... -.|.|+..||-+ .+|..|+.+++.+..- .| ..-+-|+++.-+.+
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~-------~~y~~dlE~G~i~r~~-rG---HtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG-------VIYQVDLEDGRIQREY-RG---HTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCCe-------EEEEEEecCCEEEEEE-cC---CcceeeeeeecccC
Confidence 47666532 22333333322222 356788888643 3899999999987653 12 22334444442222
Q ss_pred EEEEEecCCCCcccCcEEEEECCCCceEe-eeec--CCCCCCCcce--EEEEECCEEEEEecCCCCCCcceEEEEECCCC
Q 012184 167 YLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIK--GDLVTGRAGH--AGITIDENWYIVGGGDNNNGCQETIVLNMTKL 241 (469)
Q Consensus 167 ~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~--~~~p~~r~~~--~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~ 241 (469)
-=++.|+-++ .+-++|..|.+-.. +.+- ..+..|-.+- .+...+...+|+||+.. +-++++...
T Consensus 169 ~qilsG~EDG-----tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~------lslwhLrss 237 (325)
T KOG0649|consen 169 GQILSGAEDG-----TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPK------LSLWHLRSS 237 (325)
T ss_pred cceeecCCCc-----cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCc------eeEEeccCC
Confidence 2445555443 35677877766433 2211 1122222332 34445677888888532 334555444
Q ss_pred cEEEeccC
Q 012184 242 AWSILTSV 249 (469)
Q Consensus 242 ~W~~~~~~ 249 (469)
.-+.+-++
T Consensus 238 e~t~vfpi 245 (325)
T KOG0649|consen 238 ESTCVFPI 245 (325)
T ss_pred CceEEEec
Confidence 44444333
No 185
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=91.70 E-value=10 Score=34.48 Aligned_cols=119 Identities=11% Similarity=0.102 Sum_probs=56.3
Q ss_pred CCCcCeeeEEECCEEEEEccccCCCCCcce-EEEEE-----CCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCC
Q 012184 51 PPMSDHCMVKWGTKLLILGGHYKKSSDSMI-VRFID-----LETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDR 124 (469)
Q Consensus 51 ~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~-~~~~d-----~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~ 124 (469)
....-|+.+.+++.-|.+|=++++-....- +..|. +....=+.++. .....-+..++-.+++.||+.--...
T Consensus 134 ~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~s--ey~~~AsEPCvkyY~g~LyLtTRgt~ 211 (367)
T PF12217_consen 134 AVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRRIIPS--EYERNASEPCVKYYDGVLYLTTRGTL 211 (367)
T ss_dssp --SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEEE--G--GG-TTEEEEEEEEETTEEEEEEEES-
T ss_pred eeeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceeeeechh--hhccccccchhhhhCCEEEEEEcCcC
Confidence 356789999999999999866655432211 22221 11111122221 12222334445557999999854333
Q ss_pred CCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecC
Q 012184 125 SRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC 174 (469)
Q Consensus 125 ~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~ 174 (469)
....-+.+.+-+.....|..+..... .-......+.+ ++.|||||--
T Consensus 212 ~~~~GS~L~rs~d~G~~w~slrfp~n--vHhtnlPFakv-gD~l~mFgsE 258 (367)
T PF12217_consen 212 PTNPGSSLHRSDDNGQNWSSLRFPNN--VHHTNLPFAKV-GDVLYMFGSE 258 (367)
T ss_dssp TTS---EEEEESSTTSS-EEEE-TT-----SS---EEEE-TTEEEEEEE-
T ss_pred CCCCcceeeeecccCCchhhcccccc--ccccCCCceee-CCEEEEEecc
Confidence 33345668888888889999863211 11122233445 6679999863
No 186
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.68 E-value=15 Score=36.34 Aligned_cols=175 Identities=25% Similarity=0.367 Sum_probs=88.5
Q ss_pred EECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCC
Q 012184 60 KWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 60 ~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
..++.++++|+-+. .+..+|..+.. ......|.--.-|++ ++...++.|++-|||+.. |-.||+.+
T Consensus 120 ~~d~t~l~s~sDd~------v~k~~d~s~a~-v~~~l~~htDYVR~g-~~~~~~~hivvtGsYDg~------vrl~DtR~ 185 (487)
T KOG0310|consen 120 PQDNTMLVSGSDDK------VVKYWDLSTAY-VQAELSGHTDYVRCG-DISPANDHIVVTGSYDGK------VRLWDTRS 185 (487)
T ss_pred ccCCeEEEecCCCc------eEEEEEcCCcE-EEEEecCCcceeEee-ccccCCCeEEEecCCCce------EEEEEecc
Confidence 34888999987432 14555665555 344433322222222 333456789999998864 66778776
Q ss_pred C-eEEEeeeCCCCCCCCCCceEEEEcC-cEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcce--EEEEE-
Q 012184 140 M-TWDAVEVTQTPPAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH--AGITI- 214 (469)
Q Consensus 140 ~-~W~~~~~~g~~p~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~--~~~~~- 214 (469)
. .|.. .. +.-.|. -.++.+.+ ..|...|| |.+-++|+.++ +.++..+..| +++.+
T Consensus 186 ~~~~v~-el--nhg~pV--e~vl~lpsgs~iasAgG-------n~vkVWDl~~G--------~qll~~~~~H~KtVTcL~ 245 (487)
T KOG0310|consen 186 LTSRVV-EL--NHGCPV--ESVLALPSGSLIASAGG-------NSVKVWDLTTG--------GQLLTSMFNHNKTVTCLR 245 (487)
T ss_pred CCceeE-Ee--cCCCce--eeEEEcCCCCEEEEcCC-------CeEEEEEecCC--------ceehhhhhcccceEEEEE
Confidence 6 4422 11 111121 12334444 33444444 56667666533 2333333323 22211
Q ss_pred ---CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC
Q 012184 215 ---DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK 282 (469)
Q Consensus 215 ---~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~ 282 (469)
++.-++.||.+. .+-+||+ ..|+.+-.+.-+.| +..+.+.+++.-+++|..|+.
T Consensus 246 l~s~~~rLlS~sLD~-----~VKVfd~--t~~Kvv~s~~~~~p-------vLsiavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 246 LASDSTRLLSGSLDR-----HVKVFDT--TNYKVVHSWKYPGP-------VLSIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred eecCCceEeeccccc-----ceEEEEc--cceEEEEeeecccc-------eeeEEecCCCceEEEecccce
Confidence 346677777644 3668884 44555544332222 122233345677778876653
No 187
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.64 E-value=6.6 Score=39.16 Aligned_cols=146 Identities=15% Similarity=0.090 Sum_probs=83.3
Q ss_pred ceEEEEccCC-----ceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe
Q 012184 16 VVMVFDLRSL-----AWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL 90 (469)
Q Consensus 16 ~~~~~d~~~~-----~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~ 90 (469)
.++.+|.... .|..+... ..-..+.+...++.+|+.-.... ....+..+++.+..
T Consensus 253 ~v~~~d~~~~~~~~~~~~~l~~~-----------------~~~~~~~v~~~~~~~yi~Tn~~a---~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 253 EVYLLDLDDGGSPDAKPKLLSPR-----------------EDGVEYYVDHHGDRLYILTNDDA---PNGRLVAVDLADPS 312 (414)
T ss_dssp EEEEEECCCTTTSS-SEEEEEES-----------------SSS-EEEEEEETTEEEEEE-TT----TT-EEEEEETTSTS
T ss_pred eEEEEeccccCCCcCCcEEEeCC-----------------CCceEEEEEccCCEEEEeeCCCC---CCcEEEEecccccc
Confidence 7888888765 67777663 12234445556999999865322 33458888888775
Q ss_pred ---EE-EeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECC-CCeEEEeeeCCCCCCCCCCceEEEE--
Q 012184 91 ---CG-VMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE-TMTWDAVEVTQTPPAPRYDHSAALH-- 163 (469)
Q Consensus 91 ---W~-~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~-t~~W~~~~~~g~~p~~r~~~~~~~~-- 163 (469)
|. .+. +......--.+...+++|++.-=.+ ....+.++++. +..-..++ .+-.+......
T Consensus 313 ~~~~~~~l~---~~~~~~~l~~~~~~~~~Lvl~~~~~----~~~~l~v~~~~~~~~~~~~~------~p~~g~v~~~~~~ 379 (414)
T PF02897_consen 313 PAEWWTVLI---PEDEDVSLEDVSLFKDYLVLSYREN----GSSRLRVYDLDDGKESREIP------LPEAGSVSGVSGD 379 (414)
T ss_dssp GGGEEEEEE-----SSSEEEEEEEEETTEEEEEEEET----TEEEEEEEETT-TEEEEEEE------SSSSSEEEEEES-
T ss_pred cccceeEEc---CCCCceeEEEEEEECCEEEEEEEEC----CccEEEEEECCCCcEEeeec------CCcceEEeccCCC
Confidence 66 444 2222234455666788888874333 25679999988 33333332 22222212221
Q ss_pred -c-CcEEEEEecCCCCcccCcEEEEECCCCceEeee
Q 012184 164 -A-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPE 197 (469)
Q Consensus 164 -~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~ 197 (469)
. +...|.+.+.. ....+|.||+.+++.+.+.
T Consensus 380 ~~~~~~~~~~ss~~---~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 380 FDSDELRFSYSSFT---TPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp TT-SEEEEEEEETT---EEEEEEEEETTTTCEEEEE
T ss_pred CCCCEEEEEEeCCC---CCCEEEEEECCCCCEEEEE
Confidence 1 23444554443 2357999999999877654
No 188
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.57 E-value=1.9 Score=46.98 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc
Q 012184 428 TIENEVQILRQQKSAFEQEMERATSVQTQGSGG 460 (469)
Q Consensus 428 ~~e~e~~~~~q~~~~~~~~~~~~~~~q~q~~~~ 460 (469)
+.+.|++++.+.++..++++++......|.+.|
T Consensus 444 ~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~ 476 (1293)
T KOG0996|consen 444 KCQTEIEQLEELLEKEERELDEILDSLKQETEG 476 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 455566666666666666665554444444433
No 189
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=91.56 E-value=2.2 Score=43.09 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=18.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 012184 404 AERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS 441 (469)
Q Consensus 404 ~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~ 441 (469)
..+.++..++.+++++++++......+.+...++++.+
T Consensus 315 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~ 352 (444)
T TIGR03017 315 ILKQREAELREALENQKAKVLELNRQRDEMSVLQRDVE 352 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554444444444444444444
No 190
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.54 E-value=6.7 Score=32.11 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Q 012184 395 LSSVQGQLVAERSRCFKLEAQIA 417 (469)
Q Consensus 395 l~~~~~~l~~~~~~~~~~~~~~~ 417 (469)
|..++.++...+..+..++.+..
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~~~ 83 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAEAE 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 191
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=91.53 E-value=3 Score=35.91 Aligned_cols=52 Identities=13% Similarity=0.159 Sum_probs=29.9
Q ss_pred hhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184 372 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML 423 (469)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l 423 (469)
.++..+++.|.+.+.+...++.++...+.+-++...+-.....+.+.|+.+.
T Consensus 112 AQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~ 163 (192)
T PF11180_consen 112 AQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAER 163 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666667777777766666665555544444444444444433
No 192
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=91.53 E-value=14 Score=35.82 Aligned_cols=169 Identities=16% Similarity=0.162 Sum_probs=80.9
Q ss_pred ceEEEEEC--CEEEEEeccCCCCCccCcEEEEECCCCe--EEEeeeCCCCCCCCCC-ceEEEEcCcEEEEEecCCCCccc
Q 012184 106 GHSVTLVG--SRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYD-HSAALHANRYLIVFGGCSHSIFF 180 (469)
Q Consensus 106 ~~~~~~~~--~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~~~~g~~p~~r~~-~~~~~~~~~~l~v~GG~~~~~~~ 180 (469)
-|.+..-. ..+|+.. . -.+.|+.|++.... ....... ..|..-.- |.+..-+..++|+..-.+
T Consensus 146 ~H~v~~~pdg~~v~v~d-l-----G~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~s----- 213 (345)
T PF10282_consen 146 PHQVVFSPDGRFVYVPD-L-----GADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNELS----- 213 (345)
T ss_dssp EEEEEE-TTSSEEEEEE-T-----TTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETTT-----
T ss_pred ceeEEECCCCCEEEEEe-c-----CCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCCC-----
Confidence 34444442 4677652 1 25678888887665 5442221 12221111 222222346899987543
Q ss_pred CcEEEEECC--CCceEeeeecCCCCC---CC-cceEEEEE--CCEEEEEecCCCCCCcceEEEEEC--CCCcEEEeccCC
Q 012184 181 NDLHVLDLQ--TNEWSQPEIKGDLVT---GR-AGHAGITI--DENWYIVGGGDNNNGCQETIVLNM--TKLAWSILTSVK 250 (469)
Q Consensus 181 ~~i~~~d~~--~~~W~~~~~~~~~p~---~r-~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~--~~~~W~~~~~~~ 250 (469)
+.+.+|++. +..++.+......|. .. ..+.++.. +..||+.-.. .+.+.+|++ .+...+.+...+
T Consensus 214 ~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----~~sI~vf~~d~~~g~l~~~~~~~ 288 (345)
T PF10282_consen 214 NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----SNSISVFDLDPATGTLTLVQTVP 288 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----TTEEEEEEECTTTTTEEEEEEEE
T ss_pred CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-----CCEEEEEEEecCCCceEEEEEEe
Confidence 566666665 666766554333322 22 22233333 3457776432 456777776 445665554432
Q ss_pred --CCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECCCCCCCCcc
Q 012184 251 --GRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPK 301 (469)
Q Consensus 251 --~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~~~~w~~~~ 301 (469)
+..| ..+.+++ +.+|||.....+ .-.++..|.++..+....
T Consensus 289 ~~G~~P--------r~~~~s~~g~~l~Va~~~s~--~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 289 TGGKFP--------RHFAFSPDGRYLYVANQDSN--TVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp ESSSSE--------EEEEE-TTSSEEEEEETTTT--EEEEEEEETTTTEEEEEE
T ss_pred CCCCCc--------cEEEEeCCCCEEEEEecCCC--eEEEEEEeCCCCcEEEec
Confidence 2222 1233444 456666544332 123444455666665443
No 193
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.49 E-value=2.1 Score=45.52 Aligned_cols=11 Identities=18% Similarity=0.607 Sum_probs=5.5
Q ss_pred EEEEccccCCC
Q 012184 65 LLILGGHYKKS 75 (469)
Q Consensus 65 iy~~GG~~~~~ 75 (469)
+.+++|.++.+
T Consensus 30 ~~~i~G~Ng~G 40 (650)
T TIGR03185 30 IILIGGLNGAG 40 (650)
T ss_pred EEEEECCCCCC
Confidence 55555554443
No 194
>PHA02562 46 endonuclease subunit; Provisional
Probab=91.46 E-value=2 Score=44.90 Aligned_cols=11 Identities=36% Similarity=0.507 Sum_probs=4.0
Q ss_pred HHHHHHhHHHH
Q 012184 353 IDAIKEDKRVL 363 (469)
Q Consensus 353 ~~~l~~~~~~~ 363 (469)
+..+.++...+
T Consensus 301 ~~~l~d~i~~l 311 (562)
T PHA02562 301 ITKIKDKLKEL 311 (562)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 195
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.42 E-value=19 Score=37.19 Aligned_cols=113 Identities=11% Similarity=-0.002 Sum_probs=59.6
Q ss_pred ceEEEEccCC--ceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe--E
Q 012184 16 VVMVFDLRSL--AWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--C 91 (469)
Q Consensus 16 ~~~~~d~~~~--~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W 91 (469)
.++.+|..|+ .|+.-...... .. +...........++.+++||+... ...++.+|..|++ |
T Consensus 80 ~v~AlDa~TGk~lW~~~~~~~~~-------~~-~~~~~~~~~rg~av~~~~v~v~t~-------dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 80 RVYALDAKTGKELWKYDPKLPDD-------VI-PVMCCDVVNRGVALYDGKVFFGTL-------DARLVALDAKTGKVVW 144 (527)
T ss_pred cEEEEECCCCceeeEecCCCCcc-------cc-cccccccccccceEECCEEEEEcC-------CCEEEEEECCCCCEEe
Confidence 6899999876 48765432110 00 000011122334666888887432 1239999999887 7
Q ss_pred EEeecCCCCCCC-CcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEee
Q 012184 92 GVMETSGKVPVA-RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVE 146 (469)
Q Consensus 92 ~~~~~~g~~p~~-r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~~ 146 (469)
+.-.. ..... ....+-++.++.||+-.... .......++.||..|++ |+.-.
T Consensus 145 ~~~~~--~~~~~~~~tssP~v~~g~Vivg~~~~-~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 145 SKKNG--DYKAGYTITAAPLVVKGKVITGISGG-EFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred ecccc--cccccccccCCcEEECCEEEEeeccc-ccCCCcEEEEEECCCCceeEeccC
Confidence 65431 11111 12233445677766542211 11134569999998875 76543
No 196
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=91.40 E-value=2.9 Score=38.02 Aligned_cols=93 Identities=14% Similarity=0.159 Sum_probs=46.8
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHH-------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELS-------KELSSVQGQLVAERSRCFKLEAQIAELQKMLES 425 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~-------~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~ 425 (469)
++.|+.+.++-+..+.+-..++..|+.++.-+++.=-|.+ --|++.+++++++++-++-++..+ -.+..-
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL---~ekDkG 146 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSL---AEKDKG 146 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---chhhhh
Confidence 5555555555555555555555666555555443211111 112223333333333333333333 333566
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 012184 426 SQTIENEVQILRQQKSAFEQEME 448 (469)
Q Consensus 426 ~~~~e~e~~~~~q~~~~~~~~~~ 448 (469)
+|+...++...-++++.+.+-.|
T Consensus 147 iQKYFvDINiQN~KLEsLLqsME 169 (305)
T PF15290_consen 147 IQKYFVDINIQNKKLESLLQSME 169 (305)
T ss_pred HHHHHhhhhhhHhHHHHHHHHHH
Confidence 66777777777777777766554
No 197
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=91.39 E-value=11 Score=36.81 Aligned_cols=124 Identities=16% Similarity=0.187 Sum_probs=71.3
Q ss_pred cCeeeEEECCEEEEE---ccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccC
Q 012184 54 SDHCMVKWGTKLLIL---GGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLN 130 (469)
Q Consensus 54 ~~~~~~~~~~~iy~~---GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~ 130 (469)
..++....++.+=+. |-+...+...|++|.+|..-+.--++. |-.|-.|. +++-.+++.+|++-=. -++
T Consensus 378 n~f~~deyngylRvaTt~~dW~~~de~~N~vYilDe~lnvvGklt--Gl~~gERI-YAvRf~gdv~yiVTfr-----qtD 449 (603)
T COG4880 378 NSFDGDEYNGYLRVATTLSDWTSEDEPVNAVYILDENLNVVGKLT--GLAPGERI-YAVRFVGDVLYIVTFR-----QTD 449 (603)
T ss_pred hcccCcccceEEEEEeeecccccCCCccceeEEEcCCCcEEEEEe--ccCCCceE-EEEEEeCceEEEEEEe-----ccC
Confidence 455555566655443 445556668899999998877655555 33344443 5556678888887422 255
Q ss_pred cEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCC
Q 012184 131 DVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT 190 (469)
Q Consensus 131 ~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~ 190 (469)
-++..|+++-. .+...|.+-.|-+..=+-.++++.++=+|-..++ -.+-.||++.
T Consensus 450 PlfviDlsNPe--nPkvlGeLKIPGfS~YLHpigen~~lGvG~~~g~---vKiSLFdiSd 504 (603)
T COG4880 450 PLFVIDLSNPE--NPKVLGELKIPGFSEYLHPIGENRLLGVGAYQGG---VKISLFDISD 504 (603)
T ss_pred ceEEEEcCCCC--CCceeEEEecCCchhhccccCCCcEEEeecccCC---ceEEEEeccC
Confidence 68888887643 2222233333332222334557766666654433 3566777653
No 198
>PLN00181 protein SPA1-RELATED; Provisional
Probab=91.23 E-value=26 Score=38.37 Aligned_cols=60 Identities=20% Similarity=0.340 Sum_probs=33.5
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEE-EeecCCCCCCCCcceEEEEE---CCEEEEEeccCCCCCccCcEEEEEC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCG-VMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDL 137 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~-~~~~~g~~p~~r~~~~~~~~---~~~lyi~GG~~~~~~~~~~v~~~d~ 137 (469)
++.+++.||.++ .+..||+.++.-. .+.. .....++.+ ++.+++.|+.+ +.+.+||+
T Consensus 587 ~~~~L~Sgs~Dg------~v~iWd~~~~~~~~~~~~-------~~~v~~v~~~~~~g~~latgs~d------g~I~iwD~ 647 (793)
T PLN00181 587 DPTLLASGSDDG------SVKLWSINQGVSIGTIKT-------KANICCVQFPSESGRSLAFGSAD------HKVYYYDL 647 (793)
T ss_pred CCCEEEEEcCCC------EEEEEECCCCcEEEEEec-------CCCeEEEEEeCCCCCEEEEEeCC------CeEEEEEC
Confidence 456777777543 2788888765422 2221 111222222 35677777644 35889998
Q ss_pred CCC
Q 012184 138 ETM 140 (469)
Q Consensus 138 ~t~ 140 (469)
.+.
T Consensus 648 ~~~ 650 (793)
T PLN00181 648 RNP 650 (793)
T ss_pred CCC
Confidence 764
No 199
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.22 E-value=3.4 Score=41.33 Aligned_cols=13 Identities=0% Similarity=0.135 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 012184 435 ILRQQKSAFEQEM 447 (469)
Q Consensus 435 ~~~q~~~~~~~~~ 447 (469)
++++++...+.++
T Consensus 250 ~~~~~l~~~~~~l 262 (423)
T TIGR01843 250 EAQARLAELRERL 262 (423)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 200
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.20 E-value=10 Score=34.86 Aligned_cols=61 Identities=11% Similarity=0.134 Sum_probs=40.9
Q ss_pred cCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeee
Q 012184 129 LNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPE 197 (469)
Q Consensus 129 ~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~ 197 (469)
...+++||+++..|.+.+..|. .+| .+++-+...+++++. ....+.|.+||+.+.+++.+.
T Consensus 253 ~g~l~rfdPs~~sW~eypLPgs--~ar-pys~rVD~~grVW~s-----ea~agai~rfdpeta~ftv~p 313 (353)
T COG4257 253 TGSLHRFDPSVTSWIEYPLPGS--KAR-PYSMRVDRHGRVWLS-----EADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred CceeeEeCcccccceeeeCCCC--CCC-cceeeeccCCcEEee-----ccccCceeecCcccceEEEec
Confidence 4578999999999999854332 222 234444434555552 233578999999999998863
No 201
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.16 E-value=2.2 Score=45.49 Aligned_cols=46 Identities=13% Similarity=0.220 Sum_probs=20.9
Q ss_pred hHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184 377 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM 422 (469)
Q Consensus 377 l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~ 422 (469)
+.+++++++.++.+++.+++.+.+++...+.++.+++..+.+++++
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~ 252 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKK 252 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444443
No 202
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=91.14 E-value=1.3 Score=38.75 Aligned_cols=31 Identities=10% Similarity=0.208 Sum_probs=11.3
Q ss_pred hhhHhhhhhhhcchhhHHHHHHHHHHHHHHh
Q 012184 375 SRFREKIDEVNSTHSELSKELSSVQGQLVAE 405 (469)
Q Consensus 375 ~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~ 405 (469)
..|..++.+++....+.+.++..++.++..+
T Consensus 152 eeL~~eleele~e~ee~~erlk~le~E~s~L 182 (290)
T COG4026 152 EELLKELEELEAEYEEVQERLKRLEVENSRL 182 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 203
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=91.07 E-value=1.3 Score=42.58 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 012184 392 SKELSSVQGQLVAERSRCFKLEAQIAELQKMLE 424 (469)
Q Consensus 392 ~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~ 424 (469)
+++++++|+.|.+++++-.....+...|++++.
T Consensus 258 Eqsl~dlQk~Lekar~e~rnvavek~~lerkl~ 290 (575)
T KOG4403|consen 258 EQSLEDLQKRLEKAREEQRNVAVEKLDLERKLD 290 (575)
T ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHh
Confidence 344555555555544443333333333444433
No 204
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=91.06 E-value=5.2 Score=30.87 Aligned_cols=58 Identities=19% Similarity=0.322 Sum_probs=26.2
Q ss_pred hhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184 366 SLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML 423 (469)
Q Consensus 366 ~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l 423 (469)
...+.......|+..++..+....++.++..+++..++.+++.-....+.+.||+.++
T Consensus 10 s~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki 67 (107)
T PF09304_consen 10 SQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKI 67 (107)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444555555555555555555544444444444444444444444444443
No 205
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=91.03 E-value=3 Score=40.76 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=19.3
Q ss_pred hhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhh
Q 012184 372 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERS 407 (469)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~ 407 (469)
+..+.|+.-++..+..++|.+.+.+-++.++.+.+.
T Consensus 390 k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~ 425 (527)
T PF15066_consen 390 KTLQNLQEALANTQKHLQESRNEKETLQLELKKIKA 425 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 334444445555555555555555556666655543
No 206
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.99 E-value=2.4 Score=45.24 Aligned_cols=11 Identities=18% Similarity=0.277 Sum_probs=5.7
Q ss_pred ceEEEEccCCc
Q 012184 16 VVMVFDLRSLA 26 (469)
Q Consensus 16 ~~~~~d~~~~~ 26 (469)
+++++|.....
T Consensus 43 ~L~vWd~~e~~ 53 (717)
T PF10168_consen 43 DLFVWDSSECC 53 (717)
T ss_pred EEEEEECCCCE
Confidence 45555555443
No 207
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.96 E-value=6.4 Score=35.80 Aligned_cols=98 Identities=17% Similarity=0.173 Sum_probs=58.5
Q ss_pred EEEcccCCCcccCCceEEEEccCCc--eeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcc
Q 012184 2 LLRCSIRNYTLLEGVVMVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM 79 (469)
Q Consensus 2 ~~~GG~~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~ 79 (469)
|++-|.+.+ .|...|+.++. |+.+- ..|...++.++|+. .++|-+. ..
T Consensus 25 ~v~igSHs~-----~~~avd~~sG~~~We~il-------------------g~RiE~sa~vvgdf-VV~GCy~-g~---- 74 (354)
T KOG4649|consen 25 LVVIGSHSG-----IVIAVDPQSGNLIWEAIL-------------------GVRIECSAIVVGDF-VVLGCYS-GG---- 74 (354)
T ss_pred EEEEecCCc-----eEEEecCCCCcEEeehhh-------------------CceeeeeeEEECCE-EEEEEcc-Cc----
Confidence 344454444 56778998875 76543 37888888889988 4444333 22
Q ss_pred eEEEEECCCCe--EEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe
Q 012184 80 IVRFIDLETNL--CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT 141 (469)
Q Consensus 80 ~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~ 141 (469)
+|.++..|+. |...... .....+.+..++-+.++|-.+. ..|.+|+.+..
T Consensus 75 -lYfl~~~tGs~~w~f~~~~-----~vk~~a~~d~~~glIycgshd~------~~yalD~~~~~ 126 (354)
T KOG4649|consen 75 -LYFLCVKTGSQIWNFVILE-----TVKVRAQCDFDGGLIYCGSHDG------NFYALDPKTYG 126 (354)
T ss_pred -EEEEEecchhheeeeeehh-----hhccceEEcCCCceEEEecCCC------cEEEecccccc
Confidence 8888888873 7665421 1112222334455555665443 27888888765
No 208
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.93 E-value=3.5 Score=43.79 Aligned_cols=29 Identities=21% Similarity=0.481 Sum_probs=17.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 012184 424 ESSQTIENEVQILRQQKSAFEQEMERATS 452 (469)
Q Consensus 424 ~~~~~~e~e~~~~~q~~~~~~~~~~~~~~ 452 (469)
+.++.|+.|++-+....+.++-.+|=+..
T Consensus 325 ERaesLQ~eve~lkEr~deletdlEILKa 353 (1243)
T KOG0971|consen 325 ERAESLQQEVEALKERVDELETDLEILKA 353 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44446777777777776666666654433
No 209
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.84 E-value=15 Score=34.84 Aligned_cols=183 Identities=13% Similarity=0.125 Sum_probs=79.6
Q ss_pred cCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCc
Q 012184 54 SDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLND 131 (469)
Q Consensus 54 ~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~ 131 (469)
..+.+..+ ++.++++|.. ..+|+=.=.-.+|+.+... +.. .-..+... ++.+++++..+.
T Consensus 105 s~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~~---~~g-s~~~~~r~~dG~~vavs~~G~------- 166 (302)
T PF14870_consen 105 SPFGITALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVSE---TSG-SINDITRSSDGRYVAVSSRGN------- 166 (302)
T ss_dssp -EEEEEEEETTEEEEEETT---------EEEESSTTSSEEEEE-S--------EEEEEE-TTS-EEEEETTSS-------
T ss_pred CeeEEEEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEcccC---Ccc-eeEeEEECCCCcEEEEECccc-------
Confidence 33444444 6677777542 1255544445579988731 221 22222223 456666654322
Q ss_pred EE-EEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEE--CCCCceEeeeecCCCCCCCcc
Q 012184 132 VH-FLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLD--LQTNEWSQPEIKGDLVTGRAG 208 (469)
Q Consensus 132 v~-~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d--~~~~~W~~~~~~~~~p~~r~~ 208 (469)
++ ..|+-...|.... .+..|.-.++....++.|+++. .+. .+..-+ -...+|.+... +.....++
T Consensus 167 ~~~s~~~G~~~w~~~~----r~~~~riq~~gf~~~~~lw~~~-~Gg-----~~~~s~~~~~~~~w~~~~~--~~~~~~~~ 234 (302)
T PF14870_consen 167 FYSSWDPGQTTWQPHN----RNSSRRIQSMGFSPDGNLWMLA-RGG-----QIQFSDDPDDGETWSEPII--PIKTNGYG 234 (302)
T ss_dssp EEEEE-TT-SS-EEEE------SSS-EEEEEE-TTS-EEEEE-TTT-----EEEEEE-TTEEEEE---B---TTSS--S-
T ss_pred EEEEecCCCccceEEc----cCccceehhceecCCCCEEEEe-CCc-----EEEEccCCCCccccccccC--CcccCcee
Confidence 43 4577777898874 3456666677766677788866 222 233333 23456887431 22233333
Q ss_pred e-EEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEec
Q 012184 209 H-AGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGG 278 (469)
Q Consensus 209 ~-~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG 278 (469)
+ .++.. ++.+++.||. ..+++=.-.-++|.+..... ..|. .-+.+.. .+.++-+|+|.
T Consensus 235 ~ld~a~~~~~~~wa~gg~------G~l~~S~DgGktW~~~~~~~-~~~~--n~~~i~f---~~~~~gf~lG~ 294 (302)
T PF14870_consen 235 ILDLAYRPPNEIWAVGGS------GTLLVSTDGGKTWQKDRVGE-NVPS--NLYRIVF---VNPDKGFVLGQ 294 (302)
T ss_dssp EEEEEESSSS-EEEEEST------T-EEEESSTTSS-EE-GGGT-TSSS-----EEEE---EETTEEEEE-S
T ss_pred eEEEEecCCCCEEEEeCC------ccEEEeCCCCccceECcccc-CCCC--ceEEEEE---cCCCceEEECC
Confidence 3 33443 4678888883 23444444567899865322 2221 1122222 22468888885
No 210
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=90.83 E-value=2.9 Score=42.46 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184 391 LSKELSSVQGQLVAERSRCFKLEAQIAELQKML 423 (469)
Q Consensus 391 ~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l 423 (469)
++.++-++-.++..++-+..-+|++.-|.++++
T Consensus 172 LETqKlDLmaevSeLKLkltalEkeq~e~E~K~ 204 (861)
T KOG1899|consen 172 LETQKLDLMAEVSELKLKLTALEKEQNETEKKL 204 (861)
T ss_pred HHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHH
Confidence 333333333333333444444443333333333
No 211
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=90.81 E-value=7.5 Score=33.67 Aligned_cols=67 Identities=19% Similarity=0.239 Sum_probs=31.5
Q ss_pred hcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH---------HHhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 012184 385 NSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML---------ESSQTIENEVQILRQQKSAFEQEMERAT 451 (469)
Q Consensus 385 ~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l---------~~~~~~e~e~~~~~q~~~~~~~~~~~~~ 451 (469)
+..+.+....+..++.++...+.....+.....+++.+. ........+++++++.+...++..+.++
T Consensus 97 ~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~ 172 (177)
T PF13870_consen 97 KQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILE 172 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444544441 1223344555566666666666655443
No 212
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=90.73 E-value=3.2 Score=36.68 Aligned_cols=57 Identities=19% Similarity=0.290 Sum_probs=25.5
Q ss_pred chhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 012184 387 THSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQE 446 (469)
Q Consensus 387 ~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~~~~ 446 (469)
+.+|++.++.++.++.+.++.+++-|+++-.-| +-+.+++..++++++|.+..+.++
T Consensus 91 Rm~eme~~i~dL~een~~L~~en~~Lr~~n~~L---~~~n~el~~~le~~~~~l~~~~~~ 147 (292)
T KOG4005|consen 91 RMEEMEYEIKDLTEENEILQNENDSLRAINESL---LAKNHELDSELELLRQELAELKQQ 147 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHhhHHH
Confidence 334445555555555555444444444332211 222234455555555555544433
No 213
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=90.69 E-value=7.2 Score=31.14 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=44.1
Q ss_pred cchhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHH
Q 012184 347 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEA 414 (469)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~ 414 (469)
+++..++..++.-+....+.+.+++.-.+.|+++++.+..+..-++.-+...+.-+..++-.|++.+.
T Consensus 9 E~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqeke~ 76 (134)
T PF15233_consen 9 EDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQLHCQEKES 76 (134)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666777777777777888888888776666665566555555555555544443
No 214
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=90.66 E-value=7.7 Score=36.34 Aligned_cols=38 Identities=29% Similarity=0.466 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHH
Q 012184 410 FKLEAQIAELQKMLESSQ-----TIENEVQILRQQKSAFEQEM 447 (469)
Q Consensus 410 ~~~~~~~~e~~~~l~~~~-----~~e~e~~~~~q~~~~~~~~~ 447 (469)
.++..+..+++..+...| +|.+.+..+..++.....++
T Consensus 116 ~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~l 158 (310)
T PF09755_consen 116 NQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEEL 158 (310)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 333333334444444333 34445554444333333333
No 215
>PLN00181 protein SPA1-RELATED; Provisional
Probab=90.58 E-value=30 Score=37.92 Aligned_cols=172 Identities=15% Similarity=0.109 Sum_probs=79.4
Q ss_pred EEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCc
Q 012184 81 VRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH 158 (469)
Q Consensus 81 ~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~ 158 (469)
+..||..++.-...- ... ...-.+++.. ++.+++.||.+. .+.+||+.+..-...-. . ....
T Consensus 557 v~lWd~~~~~~~~~~---~~H-~~~V~~l~~~p~~~~~L~Sgs~Dg------~v~iWd~~~~~~~~~~~-~-----~~~v 620 (793)
T PLN00181 557 VQVWDVARSQLVTEM---KEH-EKRVWSIDYSSADPTLLASGSDDG------SVKLWSINQGVSIGTIK-T-----KANI 620 (793)
T ss_pred EEEEECCCCeEEEEe---cCC-CCCEEEEEEcCCCCCEEEEEcCCC------EEEEEECCCCcEEEEEe-c-----CCCe
Confidence 778888776532221 111 1111222222 356777777543 38888887654322110 0 1111
Q ss_pred eEEEE--cCcEEEEEecCCCCcccCcEEEEECCCCc--eEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEE
Q 012184 159 SAALH--ANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETI 234 (469)
Q Consensus 159 ~~~~~--~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~ 234 (469)
..+.+ .++.++++|+.+ +.|++||+.+.. ...+. + ... .-..+...++..++.|+.++ .+-
T Consensus 621 ~~v~~~~~~g~~latgs~d-----g~I~iwD~~~~~~~~~~~~--~-h~~--~V~~v~f~~~~~lvs~s~D~-----~ik 685 (793)
T PLN00181 621 CCVQFPSESGRSLAFGSAD-----HKVYYYDLRNPKLPLCTMI--G-HSK--TVSYVRFVDSSTLVSSSTDN-----TLK 685 (793)
T ss_pred EEEEEeCCCCCEEEEEeCC-----CeEEEEECCCCCccceEec--C-CCC--CEEEEEEeCCCEEEEEECCC-----EEE
Confidence 22222 245677777654 468899986543 11111 1 011 11122233556666666432 366
Q ss_pred EEECCCC----cEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECC
Q 012184 235 VLNMTKL----AWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK 293 (469)
Q Consensus 235 ~~d~~~~----~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~ 293 (469)
+||+... .|..+..+.+.. .....+...+.+.+++.|+.++ .+.+|+..
T Consensus 686 iWd~~~~~~~~~~~~l~~~~gh~------~~i~~v~~s~~~~~lasgs~D~----~v~iw~~~ 738 (793)
T PLN00181 686 LWDLSMSISGINETPLHSFMGHT------NVKNFVGLSVSDGYIATGSETN----EVFVYHKA 738 (793)
T ss_pred EEeCCCCccccCCcceEEEcCCC------CCeeEEEEcCCCCEEEEEeCCC----EEEEEECC
Confidence 7776532 233222222111 0111222333456777887655 46777754
No 216
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=90.45 E-value=1.5 Score=45.13 Aligned_cols=38 Identities=32% Similarity=0.377 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 012184 413 EAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERA 450 (469)
Q Consensus 413 ~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~~~ 450 (469)
++.++++....+.....+..++++..+++.+.++++++
T Consensus 145 ~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~ra 182 (916)
T KOG0249|consen 145 AQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRA 182 (916)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 217
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=90.44 E-value=7.3 Score=34.23 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHH
Q 012184 392 SKELSSVQGQLVAERSRCFKLEAQ 415 (469)
Q Consensus 392 ~~el~~~~~~l~~~~~~~~~~~~~ 415 (469)
.+++..++..++....++..|+.+
T Consensus 124 ~~kL~~~~~~l~~~~~ki~~Lek~ 147 (194)
T PF15619_consen 124 QRKLSQLEQKLQEKEKKIQELEKQ 147 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444434444444333
No 218
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=90.43 E-value=3.2 Score=39.51 Aligned_cols=20 Identities=5% Similarity=0.300 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 012184 428 TIENEVQILRQQKSAFEQEM 447 (469)
Q Consensus 428 ~~e~e~~~~~q~~~~~~~~~ 447 (469)
.|.+|+++..++++++.-++
T Consensus 360 ~L~keLeekkreleql~~q~ 379 (442)
T PF06637_consen 360 SLAKELEEKKRELEQLKMQL 379 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666555554
No 219
>PRK04863 mukB cell division protein MukB; Provisional
Probab=90.35 E-value=3.6 Score=47.67 Aligned_cols=7 Identities=29% Similarity=0.582 Sum_probs=2.9
Q ss_pred EEEEecc
Q 012184 116 LIIFGGE 122 (469)
Q Consensus 116 lyi~GG~ 122 (469)
+.++|+.
T Consensus 30 ~~l~G~N 36 (1486)
T PRK04863 30 TTLSGGN 36 (1486)
T ss_pred EEEECCC
Confidence 3444443
No 220
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=90.33 E-value=4.8 Score=38.48 Aligned_cols=17 Identities=35% Similarity=0.350 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012184 432 EVQILRQQKSAFEQEME 448 (469)
Q Consensus 432 e~~~~~q~~~~~~~~~~ 448 (469)
+.+++...+-+++.|+.
T Consensus 284 ey~~Ll~~K~~Ld~EIa 300 (312)
T PF00038_consen 284 EYQELLDVKLALDAEIA 300 (312)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHH
Confidence 33444444444444443
No 221
>PTZ00420 coronin; Provisional
Probab=90.31 E-value=25 Score=36.60 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=32.9
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEE-EeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCG-VMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLE 138 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~-~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~ 138 (469)
+..+++.||.+. .+..+|+.++.=. .+. .+. ...++.+ ++.+++.++.+ ..+.+||+.
T Consensus 137 g~~iLaSgS~Dg------tIrIWDl~tg~~~~~i~----~~~---~V~SlswspdG~lLat~s~D------~~IrIwD~R 197 (568)
T PTZ00420 137 NYYIMCSSGFDS------FVNIWDIENEKRAFQIN----MPK---KLSSLKWNIKGNLLSGTCVG------KHMHIIDPR 197 (568)
T ss_pred CCeEEEEEeCCC------eEEEEECCCCcEEEEEe----cCC---cEEEEEECCCCCEEEEEecC------CEEEEEECC
Confidence 345566666432 3788888876521 111 111 1122223 46677666533 248899998
Q ss_pred CCe
Q 012184 139 TMT 141 (469)
Q Consensus 139 t~~ 141 (469)
+..
T Consensus 198 sg~ 200 (568)
T PTZ00420 198 KQE 200 (568)
T ss_pred CCc
Confidence 765
No 222
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=90.30 E-value=5.3 Score=36.25 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=14.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHH
Q 012184 424 ESSQTIENEVQILRQQKSAFEQEM 447 (469)
Q Consensus 424 ~~~~~~e~e~~~~~q~~~~~~~~~ 447 (469)
.+++.|++|+-.+.-++++..++.
T Consensus 109 kqie~Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 109 KQIEKLEQELKRCKSELERSQQAA 132 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566666666666666555544
No 223
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=90.16 E-value=5.5 Score=36.66 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=10.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhh
Q 012184 405 ERSRCFKLEAQIAELQKMLESSQ 427 (469)
Q Consensus 405 ~~~~~~~~~~~~~e~~~~l~~~~ 427 (469)
+..++.+...+++-.+++|+.+|
T Consensus 195 Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 195 LEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444445555555
No 224
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=90.06 E-value=8.2 Score=38.28 Aligned_cols=88 Identities=13% Similarity=0.094 Sum_probs=50.4
Q ss_pred cEEEEECCCC----ceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCC
Q 012184 182 DLHVLDLQTN----EWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLAS 257 (469)
Q Consensus 182 ~i~~~d~~~~----~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r 257 (469)
-+..||.... .|... ...|..+-+++..+..|++.=|++ ..+++||+....-+..- .
T Consensus 188 ~VtlwDv~g~sp~~~~~~~-----HsAP~~gicfspsne~l~vsVG~D-----kki~~yD~~s~~s~~~l--~------- 248 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEA-----HSAPCRGICFSPSNEALLVSVGYD-----KKINIYDIRSQASTDRL--T------- 248 (673)
T ss_pred eEEEEeccCCCcccchhhh-----ccCCcCcceecCCccceEEEeccc-----ceEEEeeccccccccee--e-------
Confidence 4667776543 35542 234455556666788888888864 36899999765433221 1
Q ss_pred CCcceEEEEEcCCcEEEEEeccCCCCCceEEEEEC
Q 012184 258 EGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRL 292 (469)
Q Consensus 258 ~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~ 292 (469)
+.|-+..+...+++.+++.|-..| .++.||+
T Consensus 249 y~~Plstvaf~~~G~~L~aG~s~G----~~i~YD~ 279 (673)
T KOG4378|consen 249 YSHPLSTVAFSECGTYLCAGNSKG----ELIAYDM 279 (673)
T ss_pred ecCCcceeeecCCceEEEeecCCc----eEEEEec
Confidence 122222333344667777776554 3666665
No 225
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=90.04 E-value=6 Score=31.91 Aligned_cols=37 Identities=14% Similarity=0.293 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 012184 391 LSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 427 (469)
Q Consensus 391 ~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~ 427 (469)
+.+.++.+..++.+..+.....+.++.+++..+....
T Consensus 66 LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~ 102 (126)
T PF07889_consen 66 LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIG 102 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4445555555555555555555555555555444443
No 226
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=90.01 E-value=1.7 Score=38.32 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=9.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhh
Q 012184 405 ERSRCFKLEAQIAELQKMLESSQ 427 (469)
Q Consensus 405 ~~~~~~~~~~~~~e~~~~l~~~~ 427 (469)
..++...++.++++.+++|+..+
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~ 178 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQ 178 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433333
No 227
>PRK13684 Ycf48-like protein; Provisional
Probab=90.01 E-value=19 Score=34.76 Aligned_cols=139 Identities=10% Similarity=0.062 Sum_probs=68.1
Q ss_pred EEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEE-ECCCCeEEEeeeCCCCCCCCCCce
Q 012184 81 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFL-DLETMTWDAVEVTQTPPAPRYDHS 159 (469)
Q Consensus 81 ~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~-d~~t~~W~~~~~~g~~p~~r~~~~ 159 (469)
+++-+=.-.+|..+.+ +..-.-+.+....+..|+..|... .++.- |....+|+.+.. +..+.-++
T Consensus 154 i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~~G------~i~~s~~~gg~tW~~~~~----~~~~~l~~ 219 (334)
T PRK13684 154 IYRTTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSSRG------NFYSTWEPGQTAWTPHQR----NSSRRLQS 219 (334)
T ss_pred EEEECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeCCc------eEEEEcCCCCCeEEEeeC----CCccccee
Confidence 4443334568998862 222233444444444444433222 13332 334467988742 34455556
Q ss_pred EEEEcCcEEEEEecCCCCcccCcEEEEE-C-CCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEE
Q 012184 160 AALHANRYLIVFGGCSHSIFFNDLHVLD-L-QTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVL 236 (469)
Q Consensus 160 ~~~~~~~~l~v~GG~~~~~~~~~i~~~d-~-~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~ 236 (469)
+....++.++++|..+ ..++. . .-.+|+.+.. +........++++.. ++.++++|.. .-++.-
T Consensus 220 i~~~~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~~-~~~~~~~~l~~v~~~~~~~~~~~G~~------G~v~~S 285 (334)
T PRK13684 220 MGFQPDGNLWMLARGG-------QIRFNDPDDLESWSKPII-PEITNGYGYLDLAYRTPGEIWAGGGN------GTLLVS 285 (334)
T ss_pred eeEcCCCCEEEEecCC-------EEEEccCCCCCccccccC-CccccccceeeEEEcCCCCEEEEcCC------CeEEEe
Confidence 5555567788887532 12232 2 2347987531 111111223334444 4568887652 123333
Q ss_pred ECCCCcEEEec
Q 012184 237 NMTKLAWSILT 247 (469)
Q Consensus 237 d~~~~~W~~~~ 247 (469)
.-.-.+|..+.
T Consensus 286 ~d~G~tW~~~~ 296 (334)
T PRK13684 286 KDGGKTWEKDP 296 (334)
T ss_pred CCCCCCCeECC
Confidence 33456899864
No 228
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=90.00 E-value=4.1 Score=37.37 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=12.2
Q ss_pred hhhhhhhhhhhHhhhhhhhcchhhHHHHHHHH
Q 012184 367 LTEVRTENSRFREKIDEVNSTHSELSKELSSV 398 (469)
Q Consensus 367 ~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~ 398 (469)
+.....+..+.+..+.+.+..+..++.+++..
T Consensus 14 L~q~eee~~~a~~~L~e~e~~a~~Leek~k~a 45 (246)
T PF00769_consen 14 LRQMEEEMRRAQEALEESEETAEELEEKLKQA 45 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333433333333333333333
No 229
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=89.98 E-value=2.8 Score=30.73 Aligned_cols=70 Identities=19% Similarity=0.304 Sum_probs=35.7
Q ss_pred hhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 012184 366 SLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS 441 (469)
Q Consensus 366 ~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~ 441 (469)
.+...+.+...+-+++...+....+.+..+..--.+++..+.++.+|+.... ...++.|.|+..+..+++
T Consensus 5 lLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~------kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 5 LLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHR------KMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555555555555554432 222345566655555544
No 230
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=89.96 E-value=3.2 Score=41.52 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=15.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHH
Q 012184 398 VQGQLVAERSRCFKLEAQIAELQKMLESSQTIEN 431 (469)
Q Consensus 398 ~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~ 431 (469)
.+.+++.++.....|+.|.|-|+++....+.||.
T Consensus 644 ERee~eRl~~erlrle~qRQrLERErmErERLEr 677 (940)
T KOG4661|consen 644 EREELERLKAERLRLERQRQRLERERMERERLER 677 (940)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555544444444443433
No 231
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=89.95 E-value=5.1 Score=42.53 Aligned_cols=8 Identities=0% Similarity=0.177 Sum_probs=3.5
Q ss_pred eccCCCCC
Q 012184 246 LTSVKGRN 253 (469)
Q Consensus 246 ~~~~~~~~ 253 (469)
||.+|...
T Consensus 254 IP~LP~~~ 261 (980)
T KOG0980|consen 254 IPTLPEDA 261 (980)
T ss_pred CCCCCCCC
Confidence 44444443
No 232
>PF15556 Zwint: ZW10 interactor
Probab=89.86 E-value=7.6 Score=33.53 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012184 431 NEVQILRQQKSAFEQEM 447 (469)
Q Consensus 431 ~e~~~~~q~~~~~~~~~ 447 (469)
+|++.+.|++..++++.
T Consensus 155 qeLe~l~qeL~~lkqQa 171 (252)
T PF15556_consen 155 QELERLYQELGTLKQQA 171 (252)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 233
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.86 E-value=21 Score=34.99 Aligned_cols=139 Identities=13% Similarity=0.052 Sum_probs=73.3
Q ss_pred ceEEEEccCCc--eeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCC--eE
Q 012184 16 VVMVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN--LC 91 (469)
Q Consensus 16 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~--~W 91 (469)
.++.+|+.+++ |+...... . ....--....+++||+-.. .. .+++||..++ .|
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~~---------------~-~~~~~~~~~~~G~i~~g~~-~g------~~y~ld~~~G~~~W 135 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLGA---------------V-AQLSGPILGSDGKIYVGSW-DG------KLYALDASTGTLVW 135 (370)
T ss_pred cEEEEeCCCCcEEecccCcCc---------------c-eeccCceEEeCCeEEEecc-cc------eEEEEECCCCcEEE
Confidence 68899999877 86555420 0 0011111112677666533 22 4999999655 48
Q ss_pred EEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCC--eEEEeeeCCCCCCCCCCceEEEEcCcEEE
Q 012184 92 GVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM--TWDAVEVTQTPPAPRYDHSAALHANRYLI 169 (469)
Q Consensus 92 ~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~--~W~~~~~~g~~p~~r~~~~~~~~~~~~l~ 169 (469)
..-... . .+....++..++.+|+-- ..+.++.+|..++ .|..-...+ .+....+..+ +.++.+|
T Consensus 136 ~~~~~~---~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~--~~~~~vy 201 (370)
T COG1520 136 SRNVGG---S-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP-LSLSIYGSPA--IASGTVY 201 (370)
T ss_pred EEecCC---C-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc-cccccccCce--eecceEE
Confidence 776532 1 333333444445555532 2455889988865 577544222 2222222222 4466555
Q ss_pred EEecCCCCcccCcEEEEECCCCc--eEe
Q 012184 170 VFGGCSHSIFFNDLHVLDLQTNE--WSQ 195 (469)
Q Consensus 170 v~GG~~~~~~~~~i~~~d~~~~~--W~~ 195 (469)
+- ..+ . ...++.+|+.+++ |..
T Consensus 202 ~~-~~~--~-~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 202 VG-SDG--Y-DGILYALNAEDGTLKWSQ 225 (370)
T ss_pred Ee-cCC--C-cceEEEEEccCCcEeeee
Confidence 53 222 1 2368999997654 874
No 234
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=89.82 E-value=2.9 Score=42.38 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=22.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184 402 LVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAF 443 (469)
Q Consensus 402 l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~ 443 (469)
.+..+.++..++.+++.++.++...-+++.++.+++++.+..
T Consensus 344 ~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~ 385 (458)
T COG3206 344 LALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAA 385 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHH
Confidence 333445555555555555555554445555555555555533
No 235
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=89.76 E-value=15 Score=33.41 Aligned_cols=117 Identities=14% Similarity=0.228 Sum_probs=56.0
Q ss_pred CeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCC--cceEEEEECCEEEEEeccCCCC------
Q 012184 55 DHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVAR--GGHSVTLVGSRLIIFGGEDRSR------ 126 (469)
Q Consensus 55 ~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r--~~~~~~~~~~~lyi~GG~~~~~------ 126 (469)
..++-..++.||+.--.+.....-+.+.+-+..-..|+.+. .|... .....+.+++.||+||-....+
T Consensus 193 EPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slr----fp~nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~ 268 (367)
T PF12217_consen 193 EPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLR----FPNNVHHTNLPFAKVGDVLYMFGSERAENEWEGGE 268 (367)
T ss_dssp EEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-----TT---SS---EEEETTEEEEEEE-SSTT-SSTT-
T ss_pred cchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcc----ccccccccCCCceeeCCEEEEEeccccccccccCC
Confidence 34455669999998644444345566888888888899986 34332 2233556799999998642110
Q ss_pred ---Cc---cCcEEE-------EECCCCeEEEeee---CCCCCCCCCCceEEEEcCcEE-EEEecCC
Q 012184 127 ---KL---LNDVHF-------LDLETMTWDAVEV---TQTPPAPRYDHSAALHANRYL-IVFGGCS 175 (469)
Q Consensus 127 ---~~---~~~v~~-------~d~~t~~W~~~~~---~g~~p~~r~~~~~~~~~~~~l-~v~GG~~ 175 (469)
.+ ....+. ++++.-.|..++. .|..-..-.+-..+++.|+.| |+|||-+
T Consensus 269 ~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 269 PDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp ----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred CcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCcc
Confidence 01 112222 2344556766653 132222333344455557766 5899864
No 236
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=89.62 E-value=9.2 Score=34.90 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 012184 393 KELSSVQGQLVAERSRCFKLEAQIAELQ 420 (469)
Q Consensus 393 ~el~~~~~~l~~~~~~~~~~~~~~~e~~ 420 (469)
..+..+..++.....+....++.+..|+
T Consensus 176 ~~i~~L~~~lkeaE~Rae~aE~~v~~Le 203 (237)
T PF00261_consen 176 EKIRDLEEKLKEAENRAEFAERRVKKLE 203 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344344333333333333333333
No 237
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=89.56 E-value=1.7 Score=37.72 Aligned_cols=7 Identities=14% Similarity=0.045 Sum_probs=3.6
Q ss_pred EEEEECC
Q 012184 287 VFVMRLK 293 (469)
Q Consensus 287 ~~~~d~~ 293 (469)
..-||++
T Consensus 37 ~i~Ydl~ 43 (195)
T PF12761_consen 37 QIDYDLN 43 (195)
T ss_pred CcCcccc
Confidence 3445555
No 238
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=89.53 E-value=7.2 Score=35.03 Aligned_cols=39 Identities=15% Similarity=0.325 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012184 415 QIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERATSV 453 (469)
Q Consensus 415 ~~~e~~~~l~~~~----~~e~e~~~~~q~~~~~~~~~~~~~~~ 453 (469)
-++||.+..+.++ -|++++.+-+.++++++..+++..++
T Consensus 265 fm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqa 307 (330)
T KOG2991|consen 265 FMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQA 307 (330)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444 37777777777777777777655444
No 239
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=89.50 E-value=3.8 Score=44.69 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=10.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHH
Q 012184 423 LESSQTIENEVQILRQQKSAFEQEM 447 (469)
Q Consensus 423 l~~~~~~e~e~~~~~q~~~~~~~~~ 447 (469)
++.++.||.+...-+|.++..+.++
T Consensus 1709 l~~l~dLe~~y~~~~~~L~~~~aeL 1733 (1758)
T KOG0994|consen 1709 LDRLKDLELEYLRNEQALEDKAAEL 1733 (1758)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 3444444433333334443333333
No 240
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=89.49 E-value=4.8 Score=36.02 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=7.2
Q ss_pred HHHHHHhHHHHhhhhh
Q 012184 353 IDAIKEDKRVLELSLT 368 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~ 368 (469)
+.+++.+.+.++...+
T Consensus 54 L~q~etrnrdl~t~nq 69 (333)
T KOG1853|consen 54 LDQLETRNRDLETRNQ 69 (333)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445444444443333
No 241
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=89.39 E-value=6 Score=38.81 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=29.7
Q ss_pred HHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHH
Q 012184 354 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLE 413 (469)
Q Consensus 354 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~ 413 (469)
..|++..+++-+..=.+..+...+.+.++.+++.+...++.|++.+.+...++-++.++.
T Consensus 365 nkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k 424 (527)
T PF15066_consen 365 NKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIK 424 (527)
T ss_pred HHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 333444333333333333344445555555555555566666666555555555555543
No 242
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=89.26 E-value=10 Score=32.73 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=24.1
Q ss_pred hhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 012184 364 ELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI 416 (469)
Q Consensus 364 ~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~ 416 (469)
+..+.........+..++.+++....+.++.+..+....++..++...++.++
T Consensus 17 eeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qL 69 (205)
T KOG1003|consen 17 EEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQL 69 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33333333334444445555554444555555444444444444444444433
No 243
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=89.23 E-value=18 Score=33.46 Aligned_cols=192 Identities=18% Similarity=0.164 Sum_probs=84.2
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEE-ECCEEEEEeccCCCCCccCcEEEEECCCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETM 140 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyi~GG~~~~~~~~~~v~~~d~~t~ 140 (469)
++.+|+.++.. ..+..||+.+..-.... +....-.+++. -++.+++++... .+.++.||+.+.
T Consensus 84 g~~l~~~~~~~------~~l~~~d~~~~~~~~~~-----~~~~~~~~~~~~~dg~~l~~~~~~-----~~~~~~~d~~~~ 147 (300)
T TIGR03866 84 GKILYIANEDD------NLVTVIDIETRKVLAEI-----PVGVEPEGMAVSPDGKIVVNTSET-----TNMAHFIDTKTY 147 (300)
T ss_pred CCEEEEEcCCC------CeEEEEECCCCeEEeEe-----eCCCCcceEEECCCCCEEEEEecC-----CCeEEEEeCCCC
Confidence 44566665422 24889999876522211 11111122222 245666665432 223667788776
Q ss_pred eEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEe-eeec--CCCCCCCcceEEEEE-CC
Q 012184 141 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIK--GDLVTGRAGHAGITI-DE 216 (469)
Q Consensus 141 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~--~~~p~~r~~~~~~~~-~~ 216 (469)
.-......+.. + ..+....++..+++++.. .+.+.+||+.+.+... +... +..+.......++.. ++
T Consensus 148 ~~~~~~~~~~~--~---~~~~~s~dg~~l~~~~~~----~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 218 (300)
T TIGR03866 148 EIVDNVLVDQR--P---RFAEFTADGKELWVSSEI----GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDG 218 (300)
T ss_pred eEEEEEEcCCC--c---cEEEECCCCCEEEEEcCC----CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCC
Confidence 54322111111 1 122222244444444321 1468899998765422 2111 111111111222222 23
Q ss_pred -EEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECCC
Q 012184 217 -NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLKP 294 (469)
Q Consensus 217 -~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~~ 294 (469)
.+|+..+. .+.+.+||..+..- +...... +....+...+ +.+||+..+.+ +++.+||+.+
T Consensus 219 ~~~~~~~~~-----~~~i~v~d~~~~~~--~~~~~~~-------~~~~~~~~~~~g~~l~~~~~~~----~~i~v~d~~~ 280 (300)
T TIGR03866 219 KTAFVALGP-----ANRVAVVDAKTYEV--LDYLLVG-------QRVWQLAFTPDEKYLLTTNGVS----NDVSVIDVAA 280 (300)
T ss_pred CEEEEEcCC-----CCeEEEEECCCCcE--EEEEEeC-------CCcceEEECCCCCEEEEEcCCC----CeEEEEECCC
Confidence 44554332 23588899875443 2221111 1111222333 34555444433 3588999876
Q ss_pred CC
Q 012184 295 RD 296 (469)
Q Consensus 295 ~~ 296 (469)
..
T Consensus 281 ~~ 282 (300)
T TIGR03866 281 LK 282 (300)
T ss_pred Cc
Confidence 43
No 244
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=89.12 E-value=3.9 Score=44.18 Aligned_cols=34 Identities=24% Similarity=0.199 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184 410 FKLEAQIAELQKMLESSQTIENEVQILRQQKSAF 443 (469)
Q Consensus 410 ~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~ 443 (469)
..+++++++++++....-+.|+++.+++++.+..
T Consensus 349 ~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~ 382 (726)
T PRK09841 349 QTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAG 382 (726)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3344444444444444445555555555555433
No 245
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=89.07 E-value=5.3 Score=43.56 Aligned_cols=17 Identities=29% Similarity=0.231 Sum_probs=10.1
Q ss_pred hhcccccccCccccccc
Q 012184 320 ALAKSEKLDIPKTLSSK 336 (469)
Q Consensus 320 ~~gg~~~~~~~~~~~~~ 336 (469)
.+||..+...++++...
T Consensus 354 SLGGkTKT~iIATiSPa 370 (1041)
T KOG0243|consen 354 SLGGKTKTCIIATISPA 370 (1041)
T ss_pred HhCCCceeEEEEEeCCC
Confidence 46776666666555544
No 246
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=89.07 E-value=6.2 Score=28.58 Aligned_cols=19 Identities=21% Similarity=0.476 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 012184 432 EVQILRQQKSAFEQEMERA 450 (469)
Q Consensus 432 e~~~~~q~~~~~~~~~~~~ 450 (469)
++..+..+++..+.+++.+
T Consensus 48 ~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 48 QIKELKKKLEELEKELESL 66 (74)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444333
No 247
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.01 E-value=28 Score=35.29 Aligned_cols=192 Identities=16% Similarity=0.140 Sum_probs=90.3
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
.+.+++.|+.++. |..+|+.+++-...- ......-+++.+ ++.+++.+.++ ..+.+||+.+
T Consensus 257 ~g~~i~Sgs~D~t------vriWd~~~~~~~~~l-----~~hs~~is~~~f~~d~~~l~s~s~d------~~i~vwd~~~ 319 (456)
T KOG0266|consen 257 DGNLLVSGSDDGT------VRIWDVRTGECVRKL-----KGHSDGISGLAFSPDGNLLVSASYD------GTIRVWDLET 319 (456)
T ss_pred CCCEEEEecCCCc------EEEEeccCCeEEEee-----eccCCceEEEEECCCCCEEEEcCCC------ccEEEEECCC
Confidence 4478888875542 888899886543332 122223333333 45666666442 3488999888
Q ss_pred CeEE--EeeeCCCCCCCCCCceEEEE-cCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-C
Q 012184 140 MTWD--AVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-D 215 (469)
Q Consensus 140 ~~W~--~~~~~g~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~ 215 (469)
..-. ..-. ....+. -...+.+ .++ .|++.+... +.+-.+|+....-.... .+..-..++.+..+.. +
T Consensus 320 ~~~~~~~~~~--~~~~~~-~~~~~~fsp~~-~~ll~~~~d----~~~~~w~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 390 (456)
T KOG0266|consen 320 GSKLCLKLLS--GAENSA-PVTSVQFSPNG-KYLLSASLD----RTLKLWDLRSGKSVGTY-TGHSNLVRCIFSPTLSTG 390 (456)
T ss_pred Cceeeeeccc--CCCCCC-ceeEEEECCCC-cEEEEecCC----CeEEEEEccCCcceeee-cccCCcceeEecccccCC
Confidence 7732 1111 111221 2233333 344 444444332 24556666554322211 1111112455555544 3
Q ss_pred CEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEE
Q 012184 216 ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMR 291 (469)
Q Consensus 216 ~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d 291 (469)
+.+++.|+. ...+..+|+.+.. .+..+.+.. -.............++++++.+....-.+|.++
T Consensus 391 ~~~i~sg~~-----d~~v~~~~~~s~~--~~~~l~~h~-----~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 391 GKLIYSGSE-----DGSVYVWDSSSGG--ILQRLEGHS-----KAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCeEEEEeC-----CceEEEEeCCccc--hhhhhcCCC-----CCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 445555553 2357888887632 122222211 011112222335567777776554444455443
No 248
>PRK02889 tolB translocation protein TolB; Provisional
Probab=88.99 E-value=27 Score=35.05 Aligned_cols=140 Identities=8% Similarity=-0.006 Sum_probs=69.1
Q ss_pred ceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECC-EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCC
Q 012184 79 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD 157 (469)
Q Consensus 79 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~ 157 (469)
..+|.+|..++...++... . .......-.-++ .|++..... ....+|.++..+.....+...+ .+.
T Consensus 264 ~~Iy~~d~~~~~~~~lt~~---~-~~~~~~~wSpDG~~l~f~s~~~----g~~~Iy~~~~~~g~~~~lt~~g-----~~~ 330 (427)
T PRK02889 264 SQIYTVNADGSGLRRLTQS---S-GIDTEPFFSPDGRSIYFTSDRG----GAPQIYRMPASGGAAQRVTFTG-----SYN 330 (427)
T ss_pred ceEEEEECCCCCcEECCCC---C-CCCcCeEEcCCCCEEEEEecCC----CCcEEEEEECCCCceEEEecCC-----CCc
Confidence 4599999988876666421 1 111111112234 455432211 1346899998888777765322 111
Q ss_pred ceE-EEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEE
Q 012184 158 HSA-ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL 236 (469)
Q Consensus 158 ~~~-~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~ 236 (469)
... ..-+++.|+.....+. ...++++|+.++....+.... . .......-+++.+++...... ...++.+
T Consensus 331 ~~~~~SpDG~~Ia~~s~~~g---~~~I~v~d~~~g~~~~lt~~~---~--~~~p~~spdg~~l~~~~~~~g--~~~l~~~ 400 (427)
T PRK02889 331 TSPRISPDGKLLAYISRVGG---AFKLYVQDLATGQVTALTDTT---R--DESPSFAPNGRYILYATQQGG--RSVLAAV 400 (427)
T ss_pred CceEECCCCCEEEEEEccCC---cEEEEEEECCCCCeEEccCCC---C--ccCceECCCCCEEEEEEecCC--CEEEEEE
Confidence 122 2222344544333221 136999999888876654211 1 111111224555555443222 3457777
Q ss_pred ECCCC
Q 012184 237 NMTKL 241 (469)
Q Consensus 237 d~~~~ 241 (469)
+....
T Consensus 401 ~~~g~ 405 (427)
T PRK02889 401 SSDGR 405 (427)
T ss_pred ECCCC
Confidence 77543
No 249
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=88.98 E-value=8.1 Score=36.87 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 012184 429 IENEVQILRQQKSAFEQEMERA 450 (469)
Q Consensus 429 ~e~e~~~~~q~~~~~~~~~~~~ 450 (469)
|.+|..-+.++++..+++++++
T Consensus 354 Lrkerd~L~keLeekkreleql 375 (442)
T PF06637_consen 354 LRKERDSLAKELEEKKRELEQL 375 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555433
No 250
>PF14282 FlxA: FlxA-like protein
Probab=88.89 E-value=1.2 Score=34.97 Aligned_cols=6 Identities=33% Similarity=0.628 Sum_probs=2.2
Q ss_pred HHHHHH
Q 012184 391 LSKELS 396 (469)
Q Consensus 391 ~~~el~ 396 (469)
+.++|.
T Consensus 31 Lq~ql~ 36 (106)
T PF14282_consen 31 LQEQLQ 36 (106)
T ss_pred HHHHHH
Confidence 333333
No 251
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=88.83 E-value=4.7 Score=46.24 Aligned_cols=10 Identities=30% Similarity=0.268 Sum_probs=5.1
Q ss_pred EECCEEEEEc
Q 012184 60 KWGTKLLILG 69 (469)
Q Consensus 60 ~~~~~iy~~G 69 (469)
.++|++-+.|
T Consensus 15 ~lDG~t~i~G 24 (1201)
T PF12128_consen 15 KLDGHTHICG 24 (1201)
T ss_pred ecCCceeeec
Confidence 3455555554
No 252
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=88.82 E-value=3.4 Score=29.95 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=15.6
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 012184 381 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQ 420 (469)
Q Consensus 381 ~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~ 420 (469)
+.+....+..+..|.+.+..+..+....+-+|...+.+++
T Consensus 7 l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e 46 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELE 46 (74)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333344444444444333333333333334444433333
No 253
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.65 E-value=4.6 Score=42.93 Aligned_cols=45 Identities=18% Similarity=0.340 Sum_probs=23.7
Q ss_pred hhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 012184 372 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI 416 (469)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~ 416 (469)
.+.+++..+++....++.++++..+.+..++.....++.+++.|+
T Consensus 396 ~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQV 440 (1243)
T KOG0971|consen 396 QDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQV 440 (1243)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555444
No 254
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=88.60 E-value=3.8 Score=42.68 Aligned_cols=8 Identities=38% Similarity=0.497 Sum_probs=3.2
Q ss_pred EEEEECCC
Q 012184 81 VRFIDLET 88 (469)
Q Consensus 81 ~~~~d~~t 88 (469)
++..|+..
T Consensus 42 L~~I~p~~ 49 (594)
T PF05667_consen 42 LRVIDPSL 49 (594)
T ss_pred HHHhCccc
Confidence 33444433
No 255
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=88.56 E-value=3.8 Score=47.42 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=26.5
Q ss_pred hhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 012184 379 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 427 (469)
Q Consensus 379 ~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~ 427 (469)
.+++++.+++.+++.+++..+.++..+++++..++++++++++++...+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~ 324 (1353)
T TIGR02680 276 TQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQ 324 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444445555555555555555555555555666555555555544443
No 256
>PRK01742 tolB translocation protein TolB; Provisional
Probab=88.49 E-value=29 Score=34.82 Aligned_cols=137 Identities=7% Similarity=-0.012 Sum_probs=64.6
Q ss_pred eEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCE-EEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCc
Q 012184 80 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSR-LIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH 158 (469)
Q Consensus 80 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~ 158 (469)
.+|.+|+.++....+... +.. .....-.-+++ |++...... ...+|.++..+..-..+. + .. + .
T Consensus 273 ~Iy~~d~~~~~~~~lt~~---~~~-~~~~~wSpDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~--~---~~-~-~ 337 (429)
T PRK01742 273 NIYVMGANGGTPSQLTSG---AGN-NTEPSWSPDGQSILFTSDRSG----SPQVYRMSASGGGASLVG--G---RG-Y-S 337 (429)
T ss_pred EEEEEECCCCCeEeeccC---CCC-cCCEEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEec--C---CC-C-C
Confidence 489999988887766521 111 11111112344 554432221 346888887665433331 1 11 1 1
Q ss_pred eEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEE-EECCEEEEEecCCCCCCcceEEEEE
Q 012184 159 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI-TIDENWYIVGGGDNNNGCQETIVLN 237 (469)
Q Consensus 159 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~d~~~~d 237 (469)
....-++++|++.++ +.++.+|+.++.+..+... . . ..+.. .-++.++++++..+. ...+++.+
T Consensus 338 ~~~SpDG~~ia~~~~-------~~i~~~Dl~~g~~~~lt~~--~---~-~~~~~~sPdG~~i~~~s~~g~--~~~l~~~~ 402 (429)
T PRK01742 338 AQISADGKTLVMING-------DNVVKQDLTSGSTEVLSST--F---L-DESPSISPNGIMIIYSSTQGL--GKVLQLVS 402 (429)
T ss_pred ccCCCCCCEEEEEcC-------CCEEEEECCCCCeEEecCC--C---C-CCCceECCCCCEEEEEEcCCC--ceEEEEEE
Confidence 111222344555433 4588899999888765421 1 1 11212 225666666654322 23344445
Q ss_pred CCCCcEEEe
Q 012184 238 MTKLAWSIL 246 (469)
Q Consensus 238 ~~~~~W~~~ 246 (469)
.....=..+
T Consensus 403 ~~G~~~~~l 411 (429)
T PRK01742 403 ADGRFKARL 411 (429)
T ss_pred CCCCceEEc
Confidence 544443344
No 257
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=88.44 E-value=9.9 Score=30.22 Aligned_cols=12 Identities=17% Similarity=0.468 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 012184 436 LRQQKSAFEQEM 447 (469)
Q Consensus 436 ~~q~~~~~~~~~ 447 (469)
++.+++.+..++
T Consensus 96 l~e~l~eLq~~i 107 (119)
T COG1382 96 LQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 258
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=88.42 E-value=28 Score=34.53 Aligned_cols=202 Identities=11% Similarity=0.060 Sum_probs=95.7
Q ss_pred CeeeEEECCEEEEEccccCCCCCcceEEEEEC-CCCeEEEeecCCCCCCCCcceEEEEEC-CEEEEEeccCCCCCccCcE
Q 012184 55 DHCMVKWGTKLLILGGHYKKSSDSMIVRFIDL-ETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDV 132 (469)
Q Consensus 55 ~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~-~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyi~GG~~~~~~~~~~v 132 (469)
..++...++.+|++|-. . +..... .-.+|+.++....+|.. .+....++ +.++++|..+ .+
T Consensus 139 l~~v~f~~~~g~~vG~~-G-------~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~G-------~v 201 (398)
T PLN00033 139 FNSISFKGKEGWIIGKP-A-------ILLHTSDGGETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDEG-------AI 201 (398)
T ss_pred eeeeEEECCEEEEEcCc-e-------EEEEEcCCCCCceECccccCCCCC--ceEEEEECCCceEEEeccc-------eE
Confidence 34455557888888532 1 222222 34579988742122222 33344444 4577777322 25
Q ss_pred EEEECCCCeEEEeeeCC-CCCC--------------CCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCC-ceEee
Q 012184 133 HFLDLETMTWDAVEVTQ-TPPA--------------PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN-EWSQP 196 (469)
Q Consensus 133 ~~~d~~t~~W~~~~~~g-~~p~--------------~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~-~W~~~ 196 (469)
++-+-...+|..+.... ..|. .-..+.+....++.++++|-.+ .+++-+-... .|..+
T Consensus 202 ~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G------~~~~s~d~G~~~W~~~ 275 (398)
T PLN00033 202 YVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRG------NFYLTWEPGQPYWQPH 275 (398)
T ss_pred EEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCc------cEEEecCCCCcceEEe
Confidence 55544556898762110 0011 1112233334456666666432 2333332233 38887
Q ss_pred eecCCCCCCCcceEEEE-ECCEEEEEecCCCCCCcceEEEEECCCCc-----EEEeccCCCCCCCCCCCcceEEEEEcCC
Q 012184 197 EIKGDLVTGRAGHAGIT-IDENWYIVGGGDNNNGCQETIVLNMTKLA-----WSILTSVKGRNPLASEGLSVCSAIIEGE 270 (469)
Q Consensus 197 ~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~d~~~~d~~~~~-----W~~~~~~~~~~p~~r~~~s~~~~~~~~~ 270 (469)
. .+.++...++.. .++.++++|.. ..++.-+..... |..++. +.. +..+..+...++
T Consensus 276 ~----~~~~~~l~~v~~~~dg~l~l~g~~------G~l~~S~d~G~~~~~~~f~~~~~-----~~~--~~~l~~v~~~~d 338 (398)
T PLN00033 276 N----RASARRIQNMGWRADGGLWLLTRG------GGLYVSKGTGLTEEDFDFEEADI-----KSR--GFGILDVGYRSK 338 (398)
T ss_pred c----CCCccceeeeeEcCCCCEEEEeCC------ceEEEecCCCCcccccceeeccc-----CCC--CcceEEEEEcCC
Confidence 4 344444444433 35678877642 123333333333 344321 111 123333334446
Q ss_pred cEEEEEeccCCCCCceEEEEECCCCCCCCcc
Q 012184 271 HHLVAFGGYNGKYNNEVFVMRLKPRDIPRPK 301 (469)
Q Consensus 271 ~~l~v~GG~~~~~~~~~~~~d~~~~~w~~~~ 301 (469)
+.++++|... -++.-.....+|....
T Consensus 339 ~~~~a~G~~G-----~v~~s~D~G~tW~~~~ 364 (398)
T PLN00033 339 KEAWAAGGSG-----ILLRSTDGGKSWKRDK 364 (398)
T ss_pred CcEEEEECCC-----cEEEeCCCCcceeEcc
Confidence 6888888642 2444445556777643
No 259
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=88.39 E-value=5.1 Score=28.82 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=12.6
Q ss_pred hhHhhhhhhhcchhhHHHHHHHHHHHHHHh
Q 012184 376 RFREKIDEVNSTHSELSKELSSVQGQLVAE 405 (469)
Q Consensus 376 ~l~~~~~~~~~~~~e~~~el~~~~~~l~~~ 405 (469)
+|+.+++.+=..+..++.++.+++.+...+
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L 37 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNEL 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344444444444444444444444433333
No 260
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=88.35 E-value=8.3 Score=37.47 Aligned_cols=12 Identities=25% Similarity=0.529 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 012184 436 LRQQKSAFEQEM 447 (469)
Q Consensus 436 ~~q~~~~~~~~~ 447 (469)
+.|.+.++.+|+
T Consensus 333 IKqAl~kLk~EI 344 (359)
T PF10498_consen 333 IKQALTKLKQEI 344 (359)
T ss_pred HHHHHHHHHHHH
Confidence 333444444444
No 261
>PRK10115 protease 2; Provisional
Probab=88.26 E-value=40 Score=36.19 Aligned_cols=211 Identities=7% Similarity=-0.083 Sum_probs=98.1
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeE--EEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEEC-
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLC--GVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDL- 137 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W--~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~- 137 (469)
++.-+++............+|++++.|..- ..+-.. +........... +++..++..... ..+++++|+.
T Consensus 182 D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e---~~~~~~~~~~~s~d~~~l~i~~~~~---~~~~~~l~~~~ 255 (686)
T PRK10115 182 DSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEE---KDDTFYVSLHKTTSKHYVVIHLASA---TTSEVLLLDAE 255 (686)
T ss_pred CCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEee---CCCCEEEEEEEcCCCCEEEEEEECC---ccccEEEEECc
Confidence 444444433332212336799999998833 223211 112222222323 333333443332 3567888883
Q ss_pred -CCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECC-CCceEeeeecCCCCCCCcceEEEEEC
Q 012184 138 -ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ-TNEWSQPEIKGDLVTGRAGHAGITID 215 (469)
Q Consensus 138 -~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~-~~~W~~~~~~~~~p~~r~~~~~~~~~ 215 (469)
.+..|..+.+ .+.. ..+... ..++.+|+.--.+ .....+...++. ...|..+.. ....+.--.+...+
T Consensus 256 ~~~~~~~~~~~---~~~~-~~~~~~-~~~~~ly~~tn~~--~~~~~l~~~~~~~~~~~~~l~~---~~~~~~i~~~~~~~ 325 (686)
T PRK10115 256 LADAEPFVFLP---RRKD-HEYSLD-HYQHRFYLRSNRH--GKNFGLYRTRVRDEQQWEELIP---PRENIMLEGFTLFT 325 (686)
T ss_pred CCCCCceEEEE---CCCC-CEEEEE-eCCCEEEEEEcCC--CCCceEEEecCCCcccCeEEEC---CCCCCEEEEEEEEC
Confidence 3445433321 1111 112222 3356788876443 222346777776 578988752 11122222344457
Q ss_pred CEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcC--CcEEEEEeccCCCCCceEEEEECC
Q 012184 216 ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG--EHHLVAFGGYNGKYNNEVFVMRLK 293 (469)
Q Consensus 216 ~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~d~~ 293 (469)
+.+++..-. .....++++|+.+.....+.. +. | ... +......+. +..++.+.+. ....++|.||+.
T Consensus 326 ~~l~~~~~~---~g~~~l~~~~~~~~~~~~l~~-~~--~--~~~-~~~~~~~~~~~~~~~~~~ss~--~~P~~~y~~d~~ 394 (686)
T PRK10115 326 DWLVVEERQ---RGLTSLRQINRKTREVIGIAF-DD--P--AYV-TWIAYNPEPETSRLRYGYSSM--TTPDTLFELDMD 394 (686)
T ss_pred CEEEEEEEe---CCEEEEEEEcCCCCceEEecC-CC--C--ceE-eeecccCCCCCceEEEEEecC--CCCCEEEEEECC
Confidence 777666332 224568888876655554431 11 1 111 111111111 2233333333 335689999988
Q ss_pred CCCCCC
Q 012184 294 PRDIPR 299 (469)
Q Consensus 294 ~~~w~~ 299 (469)
+..|..
T Consensus 395 ~~~~~~ 400 (686)
T PRK10115 395 TGERRV 400 (686)
T ss_pred CCcEEE
Confidence 766553
No 262
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.17 E-value=8.2 Score=40.69 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=19.9
Q ss_pred hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHH
Q 012184 373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEA 414 (469)
Q Consensus 373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~ 414 (469)
+.+.+++...+++.++++++.++++...+.++++++...++.
T Consensus 672 ~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~ 713 (970)
T KOG0946|consen 672 QIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKN 713 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555555555444444444444444433
No 263
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=88.00 E-value=7.7 Score=33.97 Aligned_cols=87 Identities=18% Similarity=0.292 Sum_probs=43.0
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh------
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS------ 426 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~------ 426 (469)
|.-|+...++.+..+.....++-.|+..+.+....+...+.++..++..+.. +..+++.-..|++++....
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~---K~~ELE~ce~ELqr~~~Ea~lLrek 88 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRT---KQLELEVCENELQRKKNEAELLREK 88 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---hhHhHHHhHHHHHHHhCHHHHhhhh
Confidence 4455555555555555555566666666665555555555555555444333 3333333333444443222
Q ss_pred -hhHHHHHHHHHHHHHH
Q 012184 427 -QTIENEVQILRQQKSA 442 (469)
Q Consensus 427 -~~~e~e~~~~~q~~~~ 442 (469)
..++.|+..++..+..
T Consensus 89 l~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 89 LGQLEAELAELREELAC 105 (202)
T ss_pred hhhhHHHHHHHHHHHHh
Confidence 2445555555555443
No 264
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.93 E-value=14 Score=33.39 Aligned_cols=107 Identities=15% Similarity=0.165 Sum_probs=50.6
Q ss_pred EEEEEecCCCCcccCcEEEEECCCCceEeeeec-------------CCCCCCCcceEEEEECCEEEEEecCCCCCCcceE
Q 012184 167 YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIK-------------GDLVTGRAGHAGITIDENWYIVGGGDNNNGCQET 233 (469)
Q Consensus 167 ~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~-------------~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~ 233 (469)
+-++.||.+. .+-+.+...++|..-... +....++...+.+.-+++++|
T Consensus 176 krlvSgGcDn-----~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viI------------- 237 (299)
T KOG1332|consen 176 KRLVSGGCDN-----LVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVII------------- 237 (299)
T ss_pred ceeeccCCcc-----ceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEE-------------
Confidence 4577788763 344444445577542210 111233444444444444444
Q ss_pred EEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC-CCCCCccc
Q 012184 234 IVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP-RDIPRPKI 302 (469)
Q Consensus 234 ~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~-~~w~~~~~ 302 (469)
|.-+.....|+.-. ....|.+.+..+ +.+. ++.|-|.|| .|.+.++..+. ..|..+..
T Consensus 238 wt~~~e~e~wk~tl--l~~f~~~~w~vS---WS~s-Gn~LaVs~G-----dNkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 238 WTKDEEYEPWKKTL--LEEFPDVVWRVS---WSLS-GNILAVSGG-----DNKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred EEecCccCcccccc--cccCCcceEEEE---Eecc-ccEEEEecC-----CcEEEEEEeCCCCcEEEccc
Confidence 34455567787522 222232222222 2222 455666666 34466666654 47876543
No 265
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=87.90 E-value=6.5 Score=41.25 Aligned_cols=34 Identities=18% Similarity=0.389 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184 389 SELSKELSSVQGQLVAERSRCFKLEAQIAELQKM 422 (469)
Q Consensus 389 ~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~ 422 (469)
.++.+++..++..|.+.+.+..-+...++||+++
T Consensus 326 mkltrqkadirc~LlEarrk~egfddk~~eLEKk 359 (1265)
T KOG0976|consen 326 MKLTRQKADIRCALLEARRKAEGFDDKLNELEKK 359 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 3344444455555444443333333333333333
No 266
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=87.89 E-value=12 Score=32.71 Aligned_cols=17 Identities=18% Similarity=0.563 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012184 431 NEVQILRQQKSAFEQEM 447 (469)
Q Consensus 431 ~e~~~~~q~~~~~~~~~ 447 (469)
.|++.+.++-+++..++
T Consensus 170 ~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 170 EEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 267
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=87.85 E-value=2.5 Score=36.29 Aligned_cols=11 Identities=45% Similarity=0.679 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 012184 412 LEAQIAELQKM 422 (469)
Q Consensus 412 ~~~~~~e~~~~ 422 (469)
++.++.+++.+
T Consensus 121 l~~e~~~l~~k 131 (169)
T PF07106_consen 121 LEEEIEELEEK 131 (169)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 268
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=87.68 E-value=31 Score=34.25 Aligned_cols=237 Identities=9% Similarity=0.057 Sum_probs=0.0
Q ss_pred CceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184 15 GVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 94 (469)
Q Consensus 15 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~ 94 (469)
+++|.|++.+++=.++.+- ..-....-....|.+|-+.-=.........++|+++...+.-+++
T Consensus 59 DdlWe~slk~g~~~ritS~----------------lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi 122 (668)
T COG4946 59 DDLWEYSLKDGKPLRITSG----------------LGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI 122 (668)
T ss_pred hHHHHhhhccCCeeEEecc----------------cceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE
Q ss_pred ecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecC
Q 012184 95 ETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC 174 (469)
Q Consensus 95 ~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~ 174 (469)
. -.-.+-...+.-.-++.|.+.--...+-.-...+|..+....+ -.|.+..-.+..++.|+ ++++|-.
T Consensus 123 T---yfGr~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~--------~e~LnlGpathiv~~dg-~ivigRn 190 (668)
T COG4946 123 T---YFGRRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIK--------TEPLNLGPATHIVIKDG-IIVIGRN 190 (668)
T ss_pred E---EeccccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCce--------eeeccCCceeeEEEeCC-EEEEccC
Q ss_pred C---------CCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEE
Q 012184 175 S---------HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSI 245 (469)
Q Consensus 175 ~---------~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~ 245 (469)
. ..+.-..+|+=.....+++++- +++...+ +-+++++++|.+.-+++.+ .+|.-|+.-+--.+
T Consensus 191 tydLP~WK~YkGGtrGklWis~d~g~tFeK~v---dl~~~vS--~PmIV~~RvYFlsD~eG~G---nlYSvdldGkDlrr 262 (668)
T COG4946 191 TYDLPHWKGYKGGTRGKLWISSDGGKTFEKFV---DLDGNVS--SPMIVGERVYFLSDHEGVG---NLYSVDLDGKDLRR 262 (668)
T ss_pred cccCcccccccCCccceEEEEecCCcceeeee---ecCCCcC--CceEEcceEEEEecccCcc---ceEEeccCCchhhh
Q ss_pred eccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCCCCccc
Q 012184 246 LTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKI 302 (469)
Q Consensus 246 ~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w~~~~~ 302 (469)
-++.. .+-...+..+|...++-.|| |+|.||+.+..-.++..
T Consensus 263 HTnFt--------dYY~R~~nsDGkrIvFq~~G-------dIylydP~td~lekldI 304 (668)
T COG4946 263 HTNFT--------DYYPRNANSDGKRIVFQNAG-------DIYLYDPETDSLEKLDI 304 (668)
T ss_pred cCCch--------hccccccCCCCcEEEEecCC-------cEEEeCCCcCcceeeec
No 269
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=87.61 E-value=5.4 Score=40.07 Aligned_cols=16 Identities=19% Similarity=0.653 Sum_probs=12.1
Q ss_pred hhhhcccCCCceeEee
Q 012184 450 ATSVQTQGSGGVWRWI 465 (469)
Q Consensus 450 ~~~~q~q~~~~~~~~~ 465 (469)
....|+.+.+++|-+.
T Consensus 434 ~p~vqeKK~s~IWqFF 449 (832)
T KOG2077|consen 434 NPAVQEKKRSSIWQFF 449 (832)
T ss_pred CchhhhhccccHHHHH
Confidence 3456888999999764
No 270
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=87.54 E-value=8.1 Score=34.79 Aligned_cols=42 Identities=24% Similarity=0.383 Sum_probs=22.2
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHH
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE 394 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~e 394 (469)
+..+++........+........++++++++.+..+.+.+.+
T Consensus 32 ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 32 IRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQ 73 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444445555555555666666655555554444
No 271
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=87.43 E-value=29 Score=33.67 Aligned_cols=105 Identities=16% Similarity=0.047 Sum_probs=58.1
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccC---CCCCcceEEEEECCCCeEE
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYK---KSSDSMIVRFIDLETNLCG 92 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~---~~~~~~~~~~~d~~t~~W~ 92 (469)
.+.++|..+++-...-+.+ ..|| +.+..-+..||+.-.+.+ .+...+.+.+||+.|.+=.
T Consensus 28 ~v~ViD~~~~~v~g~i~~G---------------~~P~--~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~ 90 (352)
T TIGR02658 28 QVYTIDGEAGRVLGMTDGG---------------FLPN--PVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI 90 (352)
T ss_pred eEEEEECCCCEEEEEEEcc---------------CCCc--eeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence 7888898874433222222 2233 223344678898876432 2235577999999999865
Q ss_pred EeecCCCCCCCCcc-----eEEEE-ECC-EEEEEeccCCCCCccCcEEEEECCCCeEEE
Q 012184 93 VMETSGKVPVARGG-----HSVTL-VGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDA 144 (469)
Q Consensus 93 ~~~~~g~~p~~r~~-----~~~~~-~~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~ 144 (469)
.--.. ++.||.. +..+. -++ .||+. .. ...+.+-++|+.+++-..
T Consensus 91 ~~i~~--p~~p~~~~~~~~~~~~ls~dgk~l~V~-n~----~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 91 ADIEL--PEGPRFLVGTYPWMTSLTPDNKTLLFY-QF----SPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred eEEcc--CCCchhhccCccceEEECCCCCEEEEe-cC----CCCCEEEEEECCCCcEEE
Confidence 43322 2333311 11222 234 57765 11 135668888988877644
No 272
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=87.28 E-value=14 Score=31.18 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 012184 393 KELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 427 (469)
Q Consensus 393 ~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~ 427 (469)
.+...++-+|...++++..|.....+|+..+..++
T Consensus 84 e~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~ 118 (159)
T PF05384_consen 84 EEAHELQVRLAMLREREKQLRERRDELERRLRNLE 118 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555555544444444444333
No 273
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=87.19 E-value=5.1 Score=41.84 Aligned_cols=18 Identities=6% Similarity=0.080 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 012184 410 FKLEAQIAELQKMLESSQ 427 (469)
Q Consensus 410 ~~~~~~~~e~~~~l~~~~ 427 (469)
.++....+++++++...+
T Consensus 325 e~l~~~~~~l~~eL~~l~ 342 (563)
T TIGR00634 325 EEVLEYAEKIKEELDQLD 342 (563)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333334444444444444
No 274
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=87.17 E-value=37 Score=35.17 Aligned_cols=142 Identities=15% Similarity=0.211 Sum_probs=77.6
Q ss_pred EEEEECCCCe-EEEeecCCCCCCCCcceEEEEE---CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCC-CCCC
Q 012184 81 VRFIDLETNL-CGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPR 155 (469)
Q Consensus 81 ~~~~d~~t~~-W~~~~~~g~~p~~r~~~~~~~~---~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~-p~~r 155 (469)
+|.+.+.-+. =..+. ++|..+...+...+ ++++++.- ...-+++.++..+.+-+++...-+- ..+-
T Consensus 407 iy~L~~~~~vk~~~v~---~~~~~~~~a~~i~ftid~~k~~~~s------~~~~~le~~el~~ps~kel~~~~~~~~~~~ 477 (691)
T KOG2048|consen 407 IYRLQPDPNVKVINVD---DVPLALLDASAISFTIDKNKLFLVS------KNIFSLEEFELETPSFKELKSIQSQAKCPS 477 (691)
T ss_pred EEEeccCcceeEEEec---cchhhhccceeeEEEecCceEEEEe------cccceeEEEEecCcchhhhhccccccCCCc
Confidence 5555554422 22222 67777655554443 46677764 1245678888888877766532111 1222
Q ss_pred CCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEE---ECCEEEEEecCCCCCCcce
Q 012184 156 YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT---IDENWYIVGGGDNNNGCQE 232 (469)
Q Consensus 156 ~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~---~~~~l~v~GG~~~~~~~~d 232 (469)
..+-+++-++++|.++++. ..|++|++++.+-..+.. .++ +...+++. ..+.+.|.-- .+.
T Consensus 478 I~~l~~SsdG~yiaa~~t~------g~I~v~nl~~~~~~~l~~--rln--~~vTa~~~~~~~~~~lvvats------~nQ 541 (691)
T KOG2048|consen 478 ISRLVVSSDGNYIAAISTR------GQIFVYNLETLESHLLKV--RLN--IDVTAAAFSPFVRNRLVVATS------NNQ 541 (691)
T ss_pred ceeEEEcCCCCEEEEEecc------ceEEEEEcccceeecchh--ccC--cceeeeeccccccCcEEEEec------CCe
Confidence 2333333346788888753 469999999987665431 111 22222222 2355666522 357
Q ss_pred EEEEECCC---CcEEEec
Q 012184 233 TIVLNMTK---LAWSILT 247 (469)
Q Consensus 233 ~~~~d~~~---~~W~~~~ 247 (469)
++.||+.. ..|.+..
T Consensus 542 v~efdi~~~~l~~ws~~n 559 (691)
T KOG2048|consen 542 VFEFDIEARNLTRWSKNN 559 (691)
T ss_pred EEEEecchhhhhhhhhcc
Confidence 88999843 4565543
No 275
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.09 E-value=8.3 Score=41.27 Aligned_cols=6 Identities=33% Similarity=0.849 Sum_probs=2.7
Q ss_pred EEEEEC
Q 012184 81 VRFIDL 86 (469)
Q Consensus 81 ~~~~d~ 86 (469)
+-.||.
T Consensus 173 lR~y~~ 178 (717)
T PF10168_consen 173 LRLYDI 178 (717)
T ss_pred EEEEec
Confidence 444444
No 276
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=86.93 E-value=2.6 Score=35.69 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=8.7
Q ss_pred hhhcchhhHHHHHHHHHHHHHH
Q 012184 383 EVNSTHSELSKELSSVQGQLVA 404 (469)
Q Consensus 383 ~~~~~~~e~~~el~~~~~~l~~ 404 (469)
..+.++..++.+++...++++.
T Consensus 47 ~~~~~l~~~~~el~~~~~~l~~ 68 (158)
T PF03938_consen 47 ALQKELQAKQKELQKLQQKLQS 68 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444433333
No 277
>PHA02562 46 endonuclease subunit; Provisional
Probab=86.91 E-value=7.4 Score=40.65 Aligned_cols=11 Identities=9% Similarity=0.277 Sum_probs=4.3
Q ss_pred HHHHHHhHHHH
Q 012184 353 IDAIKEDKRVL 363 (469)
Q Consensus 353 ~~~l~~~~~~~ 363 (469)
+..++.+...+
T Consensus 308 i~~l~~~l~~l 318 (562)
T PHA02562 308 LKELQHSLEKL 318 (562)
T ss_pred HHHHHHHHHHH
Confidence 33444433333
No 278
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=86.83 E-value=5.9 Score=41.49 Aligned_cols=53 Identities=21% Similarity=0.314 Sum_probs=29.0
Q ss_pred hhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHH
Q 012184 349 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQ 401 (469)
Q Consensus 349 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~ 401 (469)
+..++..|+.+...+...+.....+.+.|-..+.+.++.+.++++.++..+.+
T Consensus 85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~ 137 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQ 137 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666665555444455555555555555555655555544433
No 279
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.68 E-value=7.6 Score=37.97 Aligned_cols=12 Identities=33% Similarity=0.338 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 012184 432 EVQILRQQKSAF 443 (469)
Q Consensus 432 e~~~~~q~~~~~ 443 (469)
+++++.|.++..
T Consensus 346 ~IqeleqdL~a~ 357 (521)
T KOG1937|consen 346 RIQELEQDLEAV 357 (521)
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 280
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=86.58 E-value=31 Score=33.04 Aligned_cols=110 Identities=13% Similarity=0.060 Sum_probs=47.7
Q ss_pred cCcEEEEECCCCe-EEEeee-CCCCCCCCCCceEEEEc-CcEEEEEecCCCCcccCcEEEEECC--CCceEeeeecCCC-
Q 012184 129 LNDVHFLDLETMT-WDAVEV-TQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQ--TNEWSQPEIKGDL- 202 (469)
Q Consensus 129 ~~~v~~~d~~t~~-W~~~~~-~g~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~--~~~W~~~~~~~~~- 202 (469)
.+.+.+||+.+.. ...... .-..+....-+.++... +.++|+.-.. .+.+.+|++. +++.+.+......
T Consensus 147 ~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-----~~~v~v~~~~~~~~~~~~~~~~~~~p 221 (330)
T PRK11028 147 EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-----NSSVDVWQLKDPHGEIECVQTLDMMP 221 (330)
T ss_pred CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-----CCEEEEEEEeCCCCCEEEEEEEecCC
Confidence 4569999987632 211000 00111111112233333 3567776332 3677788775 4455443322222
Q ss_pred ---CCCCcceEEEEE-C-CEEEEEecCCCCCCcceEEEEEC--CCCcEEEecc
Q 012184 203 ---VTGRAGHAGITI-D-ENWYIVGGGDNNNGCQETIVLNM--TKLAWSILTS 248 (469)
Q Consensus 203 ---p~~r~~~~~~~~-~-~~l~v~GG~~~~~~~~d~~~~d~--~~~~W~~~~~ 248 (469)
+.+|....++.. + ..+|+... ..+.+.+|++ ....++.+..
T Consensus 222 ~~~~~~~~~~~i~~~pdg~~lyv~~~-----~~~~I~v~~i~~~~~~~~~~~~ 269 (330)
T PRK11028 222 ADFSDTRWAADIHITPDGRHLYACDR-----TASLISVFSVSEDGSVLSFEGH 269 (330)
T ss_pred CcCCCCccceeEEECCCCCEEEEecC-----CCCeEEEEEEeCCCCeEEEeEE
Confidence 233433223322 2 35666522 1234556665 4444554443
No 281
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=86.56 E-value=4.7 Score=39.33 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH
Q 012184 393 KELSSVQGQLVAERSRCFKLEAQIA 417 (469)
Q Consensus 393 ~el~~~~~~l~~~~~~~~~~~~~~~ 417 (469)
.|+.+++.++-.+++--+-|++|++
T Consensus 528 ~Ek~ELkmd~lrerelreslekql~ 552 (641)
T KOG3915|consen 528 LEKTELKMDFLRERELRESLEKQLA 552 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444
No 282
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=86.53 E-value=6.8 Score=41.08 Aligned_cols=19 Identities=32% Similarity=0.578 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 012184 432 EVQILRQQKSAFEQEMERA 450 (469)
Q Consensus 432 e~~~~~q~~~~~~~~~~~~ 450 (469)
+++...++..+++++++++
T Consensus 595 ele~~~~k~~rleEE~e~L 613 (698)
T KOG0978|consen 595 ELEIEKFKRKRLEEELERL 613 (698)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444
No 283
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=86.41 E-value=13 Score=33.50 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHHHH
Q 012184 428 TIENEVQILRQQKSAF 443 (469)
Q Consensus 428 ~~e~e~~~~~q~~~~~ 443 (469)
.++.++.++.++++.+
T Consensus 124 ~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 124 ALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 284
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=86.32 E-value=32 Score=32.92 Aligned_cols=138 Identities=17% Similarity=0.227 Sum_probs=74.5
Q ss_pred CEEEEEccccCC-CC--Cc-ceEEEEECCCC-----eEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEE
Q 012184 63 TKLLILGGHYKK-SS--DS-MIVRFIDLETN-----LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVH 133 (469)
Q Consensus 63 ~~iy~~GG~~~~-~~--~~-~~~~~~d~~t~-----~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~ 133 (469)
...+++|..... .. .. -.++.|+.... +++.+... +..-.-++++.++++|++.-| +.++
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~---~~~g~V~ai~~~~~~lv~~~g--------~~l~ 110 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST---EVKGPVTAICSFNGRLVVAVG--------NKLY 110 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE---EESS-EEEEEEETTEEEEEET--------TEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE---eecCcceEhhhhCCEEEEeec--------CEEE
Confidence 466777643221 11 22 56899998885 66666522 233346677778999666544 4488
Q ss_pred EEECCCCe-EEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEE
Q 012184 134 FLDLETMT-WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI 212 (469)
Q Consensus 134 ~~d~~t~~-W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~ 212 (469)
+|++.... +...... ..+-...++.+. +++|+ +|....+ -.++.|+....+-..+. .-+.++...++.
T Consensus 111 v~~l~~~~~l~~~~~~---~~~~~i~sl~~~-~~~I~-vgD~~~s---v~~~~~~~~~~~l~~va---~d~~~~~v~~~~ 179 (321)
T PF03178_consen 111 VYDLDNSKTLLKKAFY---DSPFYITSLSVF-KNYIL-VGDAMKS---VSLLRYDEENNKLILVA---RDYQPRWVTAAE 179 (321)
T ss_dssp EEEEETTSSEEEEEEE----BSSSEEEEEEE-TTEEE-EEESSSS---EEEEEEETTTE-EEEEE---EESS-BEEEEEE
T ss_pred EEEccCcccchhhhee---cceEEEEEEecc-ccEEE-EEEcccC---EEEEEEEccCCEEEEEE---ecCCCccEEEEE
Confidence 88888777 7776532 233344445555 55444 5533221 22445566555555554 234567766666
Q ss_pred EE-CCEEEEEec
Q 012184 213 TI-DENWYIVGG 223 (469)
Q Consensus 213 ~~-~~~l~v~GG 223 (469)
.+ ++. .++++
T Consensus 180 ~l~d~~-~~i~~ 190 (321)
T PF03178_consen 180 FLVDED-TIIVG 190 (321)
T ss_dssp EE-SSS-EEEEE
T ss_pred EecCCc-EEEEE
Confidence 66 555 44444
No 285
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.31 E-value=11 Score=40.76 Aligned_cols=10 Identities=20% Similarity=0.135 Sum_probs=5.0
Q ss_pred EEEEEeccCC
Q 012184 272 HLVAFGGYNG 281 (469)
Q Consensus 272 ~l~v~GG~~~ 281 (469)
.-.+.||...
T Consensus 658 ~GtlTGGs~~ 667 (1174)
T KOG0933|consen 658 SGTLTGGSRS 667 (1174)
T ss_pred CCcccCCCCC
Confidence 3345566543
No 286
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.21 E-value=23 Score=31.28 Aligned_cols=162 Identities=17% Similarity=0.090 Sum_probs=91.4
Q ss_pred eEEECCEEEEEccccCCCCCcceEEEEECCCCe--EEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEE
Q 012184 58 MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFL 135 (469)
Q Consensus 58 ~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~ 135 (469)
....+++||..-|..+.. .+.++|+.+++ |+..- + |....+-+.+.+++++|..-=.. .-.+.|
T Consensus 51 L~~~~g~i~esTG~yg~S----~ir~~~L~~gq~~~s~~l---~-~~~~FgEGit~~gd~~y~LTw~e------gvaf~~ 116 (262)
T COG3823 51 LEYLDGHILESTGLYGFS----KIRVSDLTTGQEIFSEKL---A-PDTVFGEGITKLGDYFYQLTWKE------GVAFKY 116 (262)
T ss_pred eeeeCCEEEEeccccccc----eeEEEeccCceEEEEeec---C-CccccccceeeccceEEEEEecc------ceeEEE
Confidence 345578888888866543 48999999776 44332 2 45667788899999999873111 125677
Q ss_pred ECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCce-EeeeecCCCCCCCcceEEEEE
Q 012184 136 DLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW-SQPEIKGDLVTGRAGHAGITI 214 (469)
Q Consensus 136 d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W-~~~~~~~~~p~~r~~~~~~~~ 214 (469)
|+.+.+- .|..+.+-.+-+++..+. .|++--|. .-+...||++-.= ..+.++.+-.+-+.--..-.+
T Consensus 117 d~~t~~~-----lg~~~y~GeGWgLt~d~~-~LimsdGs------atL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V 184 (262)
T COG3823 117 DADTLEE-----LGRFSYEGEGWGLTSDDK-NLIMSDGS------ATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV 184 (262)
T ss_pred ChHHhhh-----hcccccCCcceeeecCCc-ceEeeCCc------eEEEecCHHHhhhcceEEEEECCeecccccceeee
Confidence 7665432 234455666677777644 47776553 2344456554321 112212111111222234445
Q ss_pred CCEEEEEecCCCCCCcceEEEEECCCCc---EEEeccCC
Q 012184 215 DENWYIVGGGDNNNGCQETIVLNMTKLA---WSILTSVK 250 (469)
Q Consensus 215 ~~~l~v~GG~~~~~~~~d~~~~d~~~~~---W~~~~~~~ 250 (469)
++.+|. +--..+.+.+.|+.+++ |..+..++
T Consensus 185 dG~lyA-----NVw~t~~I~rI~p~sGrV~~widlS~L~ 218 (262)
T COG3823 185 DGELYA-----NVWQTTRIARIDPDSGRVVAWIDLSGLL 218 (262)
T ss_pred ccEEEE-----eeeeecceEEEcCCCCcEEEEEEccCCc
Confidence 555553 12235678889998864 66666544
No 287
>PRK13684 Ycf48-like protein; Provisional
Probab=86.20 E-value=33 Score=33.09 Aligned_cols=173 Identities=12% Similarity=0.091 Sum_probs=83.8
Q ss_pred CeEEEeecCCCCCCCCcceEEEEEC-CEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcE
Q 012184 89 NLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRY 167 (469)
Q Consensus 89 ~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~ 167 (469)
.+|..+... ...+...+.+..++ +.+|+.|.. ..+++-+-.-.+|..+.. +..-..+.+....++.
T Consensus 119 ~tW~~~~~~--~~~~~~~~~i~~~~~~~~~~~g~~-------G~i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~ 185 (334)
T PRK13684 119 KNWTRIPLS--EKLPGSPYLITALGPGTAEMATNV-------GAIYRTTDGGKNWEALVE----DAAGVVRNLRRSPDGK 185 (334)
T ss_pred CCCeEccCC--cCCCCCceEEEEECCCcceeeecc-------ceEEEECCCCCCceeCcC----CCcceEEEEEECCCCe
Confidence 479988631 11222223344444 446665532 225544445678998752 2222344455555665
Q ss_pred EEEEecCCCCcccCcEEEE-ECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEE-C-CCCcE
Q 012184 168 LIVFGGCSHSIFFNDLHVL-DLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLN-M-TKLAW 243 (469)
Q Consensus 168 l~v~GG~~~~~~~~~i~~~-d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d-~-~~~~W 243 (469)
++++|..+ .++.- |....+|..+. .+..+..++++.. ++.++++|.. + ..++. . .-..|
T Consensus 186 ~v~~g~~G------~i~~s~~~gg~tW~~~~----~~~~~~l~~i~~~~~g~~~~vg~~-G------~~~~~s~d~G~sW 248 (334)
T PRK13684 186 YVAVSSRG------NFYSTWEPGQTAWTPHQ----RNSSRRLQSMGFQPDGNLWMLARG-G------QIRFNDPDDLESW 248 (334)
T ss_pred EEEEeCCc------eEEEEcCCCCCeEEEee----CCCcccceeeeEcCCCCEEEEecC-C------EEEEccCCCCCcc
Confidence 55554322 23322 33345798864 2444555555544 5678888653 1 12332 2 33588
Q ss_pred EEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCCCCcc
Q 012184 244 SILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPK 301 (469)
Q Consensus 244 ~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w~~~~ 301 (469)
+.+.. +... ..+.+..+...+.+.++++|... -++.-.-...+|....
T Consensus 249 ~~~~~-~~~~----~~~~l~~v~~~~~~~~~~~G~~G-----~v~~S~d~G~tW~~~~ 296 (334)
T PRK13684 249 SKPII-PEIT----NGYGYLDLAYRTPGEIWAGGGNG-----TLLVSKDGGKTWEKDP 296 (334)
T ss_pred ccccC-Cccc----cccceeeEEEcCCCCEEEEcCCC-----eEEEeCCCCCCCeECC
Confidence 87532 2111 12233333334455788877532 2443333456787653
No 288
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=86.20 E-value=20 Score=31.22 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=25.0
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHH
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG 400 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~ 400 (469)
...++++...+...+........+.....+++++.+.+.+.|-+++..
T Consensus 57 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~ 104 (181)
T PRK13454 57 GAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVA 104 (181)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555555555555444433
No 289
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=86.17 E-value=2.9 Score=41.53 Aligned_cols=11 Identities=9% Similarity=0.407 Sum_probs=4.2
Q ss_pred hhhHHHHHHHH
Q 012184 388 HSELSKELSSV 398 (469)
Q Consensus 388 ~~e~~~el~~~ 398 (469)
..+++++|+.+
T Consensus 78 asELEKqLaaL 88 (475)
T PRK13729 78 AAQMQKQYEEI 88 (475)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 290
>PRK11546 zraP zinc resistance protein; Provisional
Probab=86.15 E-value=5.3 Score=32.95 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHHHH
Q 012184 428 TIENEVQILRQQKS 441 (469)
Q Consensus 428 ~~e~e~~~~~q~~~ 441 (469)
++.+|++.|++++.
T Consensus 93 aL~kEI~~Lr~kL~ 106 (143)
T PRK11546 93 AVAKEMENLRQSLD 106 (143)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 291
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=85.98 E-value=12 Score=34.02 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=8.2
Q ss_pred hhHHHHHHHHHHHHHHhhhHHH
Q 012184 389 SELSKELSSVQGQLVAERSRCF 410 (469)
Q Consensus 389 ~e~~~el~~~~~~l~~~~~~~~ 410 (469)
.++...++..+.+++..+.++.
T Consensus 136 a~L~~Kierrk~ElEr~rkRle 157 (338)
T KOG3647|consen 136 AALGSKIERRKAELERTRKRLE 157 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 292
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=85.97 E-value=7.1 Score=33.65 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHHH
Q 012184 395 LSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIE--NEVQILRQQKSAFEQEMER 449 (469)
Q Consensus 395 l~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e--~e~~~~~q~~~~~~~~~~~ 449 (469)
++.++.+++.+.+++.++++.++.+..+.-.-|=|+ +|+++..++++++|+.+.+
T Consensus 87 ~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 87 FEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555554444443333333222 4555555555555554443
No 293
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=85.95 E-value=18 Score=29.63 Aligned_cols=11 Identities=36% Similarity=0.567 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 012184 429 IENEVQILRQQ 439 (469)
Q Consensus 429 ~e~e~~~~~q~ 439 (469)
+++++.++.+.
T Consensus 103 le~e~~~~~~r 113 (132)
T PF07926_consen 103 LEKELSELEQR 113 (132)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 294
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=85.85 E-value=17 Score=32.30 Aligned_cols=43 Identities=7% Similarity=0.084 Sum_probs=20.0
Q ss_pred HHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHH
Q 012184 355 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSS 397 (469)
Q Consensus 355 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~ 397 (469)
.|.++...+...+.+......+....+.++++.+.+.+.+-++
T Consensus 81 vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~ 123 (204)
T PRK09174 81 IIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHS 123 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445544444444444444444444444444333
No 295
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=85.77 E-value=30 Score=32.08 Aligned_cols=156 Identities=13% Similarity=0.082 Sum_probs=77.4
Q ss_pred eEEECCEEEEEccccCCCCCcceEEEEECCCC-eEEEeecCCCCCCCCcceEEEE-E-CCEEEEEeccCCCCCccCcEEE
Q 012184 58 MVKWGTKLLILGGHYKKSSDSMIVRFIDLETN-LCGVMETSGKVPVARGGHSVTL-V-GSRLIIFGGEDRSRKLLNDVHF 134 (469)
Q Consensus 58 ~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~-~W~~~~~~g~~p~~r~~~~~~~-~-~~~lyi~GG~~~~~~~~~~v~~ 134 (469)
+...++.+++. .+.........+..+..+.+ +|....... +.......+.+ . ++.|+++--.. .. ..-.+.
T Consensus 114 i~~~~G~l~~~-~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~-~~--~~~~~~ 187 (275)
T PF13088_consen 114 IQLPDGRLIAP-YYHESGGSFSAFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE-GN--DDIYIS 187 (275)
T ss_dssp EEECTTEEEEE-EEEESSCEEEEEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-SS--TEEEEE
T ss_pred eEecCCCEEEE-EeeccccCcceEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-CC--CcEEEE
Confidence 44457888877 22221112334555666655 499887321 22233333333 3 56788775332 11 122344
Q ss_pred EECC-CCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcce-EEE
Q 012184 135 LDLE-TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH-AGI 212 (469)
Q Consensus 135 ~d~~-t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~-~~~ 212 (469)
+..+ -.+|+.+.+. .+|.+.....++...++.++++.........-.+++-.-...+|..+....+-+...+.+ +++
T Consensus 188 ~S~D~G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~ 266 (275)
T PF13088_consen 188 RSTDGGRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLT 266 (275)
T ss_dssp EESSTTSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEE
T ss_pred EECCCCCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeE
Confidence 4444 3579987643 445555555666666777888777322211122333233367798765332223223333 444
Q ss_pred EE-CCEEEE
Q 012184 213 TI-DENWYI 220 (469)
Q Consensus 213 ~~-~~~l~v 220 (469)
.. +++|+|
T Consensus 267 ~~~dg~l~i 275 (275)
T PF13088_consen 267 QLPDGKLYI 275 (275)
T ss_dssp EEETTEEEE
T ss_pred EeCCCcCCC
Confidence 44 468876
No 296
>PRK11519 tyrosine kinase; Provisional
Probab=85.75 E-value=8.9 Score=41.41 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 012184 413 EAQIAELQKMLESSQTIENEVQILRQQKS 441 (469)
Q Consensus 413 ~~~~~e~~~~l~~~~~~e~e~~~~~q~~~ 441 (469)
++++++++.+.....+.|+++.+++++.+
T Consensus 352 ~~~~~~l~~~~~~lp~~e~~~~~L~Re~~ 380 (719)
T PRK11519 352 EDEKAKLNGRVTAMPKTQQEIVRLTRDVE 380 (719)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 33333333333333344444444444443
No 297
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=85.72 E-value=7.6 Score=35.90 Aligned_cols=68 Identities=28% Similarity=0.415 Sum_probs=39.1
Q ss_pred hhhcchhhHHHHHHHHHHHHHHh----hhH---HHHHHHHHHHHHHHH-------HHhhhHHHHHHHHHHHHHHHHHHHH
Q 012184 383 EVNSTHSELSKELSSVQGQLVAE----RSR---CFKLEAQIAELQKML-------ESSQTIENEVQILRQQKSAFEQEME 448 (469)
Q Consensus 383 ~~~~~~~e~~~el~~~~~~l~~~----~~~---~~~~~~~~~e~~~~l-------~~~~~~e~e~~~~~q~~~~~~~~~~ 448 (469)
+++..+.|+.++++.-++++..+ +++ +.+|-+-+.||++-. -....++++.+++..++..+++||-
T Consensus 4 d~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRELA 83 (351)
T PF07058_consen 4 DVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERELA 83 (351)
T ss_pred hhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555544444333 222 233344455555552 2233788889999999999999886
Q ss_pred Hh
Q 012184 449 RA 450 (469)
Q Consensus 449 ~~ 450 (469)
++
T Consensus 84 Ra 85 (351)
T PF07058_consen 84 RA 85 (351)
T ss_pred Hh
Confidence 44
No 298
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=85.71 E-value=9.1 Score=39.90 Aligned_cols=47 Identities=19% Similarity=0.426 Sum_probs=22.8
Q ss_pred hhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHH
Q 012184 349 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKEL 395 (469)
Q Consensus 349 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el 395 (469)
+..++..+..+...++..+........++..++++.+...+++++++
T Consensus 333 l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~ 379 (594)
T PF05667_consen 333 LQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEEL 379 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444444444444444444444444444433
No 299
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=85.69 E-value=5.3 Score=40.62 Aligned_cols=19 Identities=16% Similarity=0.254 Sum_probs=7.2
Q ss_pred hhhhHhhhhhhhcchhhHH
Q 012184 374 NSRFREKIDEVNSTHSELS 392 (469)
Q Consensus 374 ~~~l~~~~~~~~~~~~e~~ 392 (469)
..-|..++++..+.+.+++
T Consensus 127 vsvLteqVeaQgEKIrDLE 145 (861)
T KOG1899|consen 127 VSVLTEQVEAQGEKIRDLE 145 (861)
T ss_pred HHHHHHHHHHhhhhHHHHH
Confidence 3333333333333333333
No 300
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=85.67 E-value=12 Score=30.95 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 012184 428 TIENEVQILRQQKSAFEQEMER 449 (469)
Q Consensus 428 ~~e~e~~~~~q~~~~~~~~~~~ 449 (469)
+++++++.++++++++.+.+++
T Consensus 112 ~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 112 KLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555543
No 301
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=85.64 E-value=15 Score=32.32 Aligned_cols=66 Identities=15% Similarity=0.254 Sum_probs=39.5
Q ss_pred HHHHHhHHHHhhhhhhhh--hhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 012184 354 DAIKEDKRVLELSLTEVR--TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAEL 419 (469)
Q Consensus 354 ~~l~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~ 419 (469)
..++.........+++.. ..+++|+..+.+.+..+.+.++++.+.+.......++-...|+++.+|
T Consensus 12 d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~L 79 (207)
T PF05546_consen 12 DSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNEL 79 (207)
T ss_pred HHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444 566777777777777777777777766666666655555555555544
No 302
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=85.62 E-value=4.7 Score=43.55 Aligned_cols=8 Identities=0% Similarity=0.156 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 012184 439 QKSAFEQE 446 (469)
Q Consensus 439 ~~~~~~~~ 446 (469)
+..+++++
T Consensus 371 ~~~~L~R~ 378 (726)
T PRK09841 371 EVLRLSRD 378 (726)
T ss_pred HHHHHHHH
Confidence 33344444
No 303
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=85.52 E-value=8.2 Score=43.27 Aligned_cols=105 Identities=15% Similarity=0.208 Sum_probs=0.0
Q ss_pred hhHHHHHHhHHHHhhhhhhhhhhhhhhHhh----------------hhhhhcchhhHHHHHHHHHHHHHHhhhHH-----
Q 012184 351 TDIDAIKEDKRVLELSLTEVRTENSRFREK----------------IDEVNSTHSELSKELSSVQGQLVAERSRC----- 409 (469)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~----------------~~~~~~~~~e~~~el~~~~~~l~~~~~~~----- 409 (469)
.+++..+++...++..+....++..+++++ ..+++.++.+...++++++++++.++.+.
T Consensus 58 ~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~ 137 (1109)
T PRK10929 58 EERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREISD 137 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q ss_pred ---------HHHHHHHHHHHHHHHH------------hhhHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 012184 410 ---------FKLEAQIAELQKMLES------------SQTIENEVQILRQQKSAFEQEMERATSVQT 455 (469)
Q Consensus 410 ---------~~~~~~~~e~~~~l~~------------~~~~e~e~~~~~q~~~~~~~~~~~~~~~q~ 455 (469)
.+..++++|++.+++. ...++.|+..+.++....+.++.-.+.+|.
T Consensus 138 ~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~ 204 (1109)
T PRK10929 138 SLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLSANNRQE 204 (1109)
T ss_pred HHhhchhhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
No 304
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=85.45 E-value=10 Score=36.69 Aligned_cols=30 Identities=17% Similarity=0.290 Sum_probs=13.6
Q ss_pred hhhhhhHhhhhhhhcchhhHHHHHHHHHHH
Q 012184 372 TENSRFREKIDEVNSTHSELSKELSSVQGQ 401 (469)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~e~~~el~~~~~~ 401 (469)
.+...++.++++.|.++.++++|..++..+
T Consensus 41 a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~ 70 (459)
T KOG0288|consen 41 AESRAIKAKLQEKELELNRLQEENTQLNEE 70 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444333
No 305
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=85.44 E-value=11 Score=35.44 Aligned_cols=75 Identities=25% Similarity=0.420 Sum_probs=48.5
Q ss_pred hhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHH
Q 012184 367 LTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKS 441 (469)
Q Consensus 367 ~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~----~~e~e~~~~~q~~~ 441 (469)
+..+..++..|..++....+.....++++..+..++..++.++..+-.+.+|+++.|.... +|..|+.+++.+-.
T Consensus 208 L~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~ 286 (306)
T PF04849_consen 208 LSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYA 286 (306)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666677777777777777777777777777777765544 45555555555443
No 306
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=85.37 E-value=5.9 Score=38.45 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=14.6
Q ss_pred hhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHH
Q 012184 370 VRTENSRFREKIDEVNSTHSELSKELSSVQGQL 402 (469)
Q Consensus 370 ~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l 402 (469)
...+...|+.++...+..+.+..++.+++-.++
T Consensus 13 t~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i 45 (344)
T PF12777_consen 13 TEEQVEEMQEELEEKQPELEEKQKEAEELLEEI 45 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433333
No 307
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=85.35 E-value=8.3 Score=35.23 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=24.2
Q ss_pred hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhh
Q 012184 373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAER 406 (469)
Q Consensus 373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~ 406 (469)
-+.-|+.++.+.+.++++.+.|+.+++.||...+
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMr 102 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMR 102 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3455666777777777777778888887777664
No 308
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=85.34 E-value=2.8 Score=38.95 Aligned_cols=34 Identities=29% Similarity=0.217 Sum_probs=14.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHH
Q 012184 398 VQGQLVAERSRCFKLEAQIAELQKMLESSQTIEN 431 (469)
Q Consensus 398 ~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~ 431 (469)
++.++..++..+.+|+-++++++.+++++++.++
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~ 92 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 92 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444443333
No 309
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=85.29 E-value=30 Score=33.85 Aligned_cols=214 Identities=12% Similarity=0.027 Sum_probs=93.9
Q ss_pred eeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCC-CCcceEEEEECCEEEEEeccCCCCCccCcEEEE
Q 012184 57 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPV-ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFL 135 (469)
Q Consensus 57 ~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~ 135 (469)
.+..-+++-++|+|... ....+|.+|+.++.-.++. +.+. ...+..++.-+..+|++-. ...+..+
T Consensus 41 ~~ft~dG~kllF~s~~d---g~~nly~lDL~t~~i~QLT---dg~g~~~~g~~~s~~~~~~~Yv~~-------~~~l~~v 107 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFD---GNRNLYLLDLATGEITQLT---DGPGDNTFGGFLSPDDRALYYVKN-------GRSLRRV 107 (386)
T ss_dssp --B-TTS-EEEEEE-TT---SS-EEEEEETTT-EEEE------SS-B-TTT-EE-TTSSEEEEEET-------TTEEEEE
T ss_pred CCcCCCCCEEEEEeccC---CCcceEEEEcccCEEEECc---cCCCCCccceEEecCCCeEEEEEC-------CCeEEEE
Confidence 33444566666655432 2345999999999999998 4332 2333333333456766631 2358999
Q ss_pred ECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecC----CC--------------CcccCcEEEEECCCCceEeee
Q 012184 136 DLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC----SH--------------SIFFNDLHVLDLQTNEWSQPE 197 (469)
Q Consensus 136 d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~----~~--------------~~~~~~i~~~d~~~~~W~~~~ 197 (469)
|+.|.+=+.+. ..|..-.+....+.+.+.-.++|=. +. ......+...|+.+++...+-
T Consensus 108 dL~T~e~~~vy---~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~ 184 (386)
T PF14583_consen 108 DLDTLEERVVY---EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF 184 (386)
T ss_dssp ETTT--EEEEE---E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE
T ss_pred ECCcCcEEEEE---ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE
Confidence 99998866665 3444444444444332222232311 00 012356888899998887764
Q ss_pred ecCCCCCCCcceEEE-EECCEEEEEecCCCCCCc-ceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEE
Q 012184 198 IKGDLVTGRAGHAGI-TIDENWYIVGGGDNNNGC-QETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVA 275 (469)
Q Consensus 198 ~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~-~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v 275 (469)
.. ..-.+|... ..++.+++|.=-...... ..+|..|.......++..-. + ....+.-.+..+|....|+
T Consensus 185 ~~----~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~---~--~e~~gHEfw~~DG~~i~y~ 255 (386)
T PF14583_consen 185 ED----TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM---E--GESVGHEFWVPDGSTIWYD 255 (386)
T ss_dssp EE----SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS------T--TEEEEEEEE-TTSS-EEEE
T ss_pred ec----CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC---C--CcccccccccCCCCEEEEE
Confidence 22 112244322 235667777321111222 36999999877666654321 1 2233444566665444443
Q ss_pred EeccCCCCCceEEEEECCCCC
Q 012184 276 FGGYNGKYNNEVFVMRLKPRD 296 (469)
Q Consensus 276 ~GG~~~~~~~~~~~~d~~~~~ 296 (469)
+...+...--+..+|+.+..
T Consensus 256 -~~~~~~~~~~i~~~d~~t~~ 275 (386)
T PF14583_consen 256 -SYTPGGQDFWIAGYDPDTGE 275 (386)
T ss_dssp -EEETTT--EEEEEE-TTT--
T ss_pred -eecCCCCceEEEeeCCCCCC
Confidence 33233222336667776653
No 310
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=85.28 E-value=35 Score=34.74 Aligned_cols=54 Identities=15% Similarity=0.040 Sum_probs=33.1
Q ss_pred cCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEc-CcEEEEEecCCCCcccCcEEEEECCCCc
Q 012184 129 LNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNE 192 (469)
Q Consensus 129 ~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~ 192 (469)
.++||+||+..+.|-.+-.+. ..+--++.++ -+.|+.+||.+ +.+..+|+.+..
T Consensus 154 g~evYRlNLEqGrfL~P~~~~-----~~~lN~v~in~~hgLla~Gt~~-----g~VEfwDpR~ks 208 (703)
T KOG2321|consen 154 GSEVYRLNLEQGRFLNPFETD-----SGELNVVSINEEHGLLACGTED-----GVVEFWDPRDKS 208 (703)
T ss_pred CcceEEEEccccccccccccc-----cccceeeeecCccceEEecccC-----ceEEEecchhhh
Confidence 567999999999996653211 1122233333 23488888854 357777776544
No 311
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=85.24 E-value=11 Score=27.23 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=13.3
Q ss_pred hhhhhhhhhhhHhhhhhhhcchhhHHHHHHH
Q 012184 367 LTEVRTENSRFREKIDEVNSTHSELSKELSS 397 (469)
Q Consensus 367 ~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~ 397 (469)
.+.+-..+.-|+-+++++++.+..+.++.+.
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444333
No 312
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=85.24 E-value=8.8 Score=40.21 Aligned_cols=83 Identities=14% Similarity=0.271 Sum_probs=38.5
Q ss_pred hhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHh
Q 012184 375 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERA 450 (469)
Q Consensus 375 ~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~----~~e~e~~~~~q~~~~~~~~~~~~ 450 (469)
.++.++++.++.++.++.++++..+.++..........-.++.+.+++--.++ +.+++...+.+-..++...++++
T Consensus 82 ~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~~~ 161 (632)
T PF14817_consen 82 RELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVEQL 161 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555544444444444444444422222 22333333333334455555555
Q ss_pred hhhcccC
Q 012184 451 TSVQTQG 457 (469)
Q Consensus 451 ~~~q~q~ 457 (469)
++.++..
T Consensus 162 q~~~R~a 168 (632)
T PF14817_consen 162 QDIQRKA 168 (632)
T ss_pred HHHHhhc
Confidence 5555543
No 313
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=85.01 E-value=13 Score=30.79 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 012184 428 TIENEVQILRQQKSAFEQEMERATSVQ 454 (469)
Q Consensus 428 ~~e~e~~~~~q~~~~~~~~~~~~~~~q 454 (469)
++++.++++-+...++++++++..+.+
T Consensus 112 ~l~~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 112 KLQQALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555556666655554444
No 314
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=84.92 E-value=15 Score=30.75 Aligned_cols=30 Identities=40% Similarity=0.426 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184 393 KELSSVQGQLVAERSRCFKLEAQIAELQKM 422 (469)
Q Consensus 393 ~el~~~~~~l~~~~~~~~~~~~~~~e~~~~ 422 (469)
++|...+.++..++.++..++..+++..++
T Consensus 67 kele~~~~qv~~Lr~~e~~le~~~~~a~~~ 96 (152)
T PF07321_consen 67 KELEKWQQQVASLREREAELEQQLAEAEEQ 96 (152)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344455555555555555555555544443
No 315
>PRK04406 hypothetical protein; Provisional
Probab=84.87 E-value=8.3 Score=28.00 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHH
Q 012184 395 LSSVQGQLVAERSRCFKLEAQI 416 (469)
Q Consensus 395 l~~~~~~l~~~~~~~~~~~~~~ 416 (469)
+.+++.++.-...-+++|...+
T Consensus 13 i~~LE~~lAfQE~tIe~LN~~v 34 (75)
T PRK04406 13 INDLECQLAFQEQTIEELNDAL 34 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344333
No 316
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=84.71 E-value=13 Score=40.42 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=28.0
Q ss_pred hhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 012184 372 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 427 (469)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~ 427 (469)
.+...+..++.++++.+.+.++++++.+.++..+.....+++.++.+.++++..++
T Consensus 643 ~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie 698 (1072)
T KOG0979|consen 643 AEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIE 698 (1072)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33344444455555555555555655555555555544555544444444433333
No 317
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=84.70 E-value=9.2 Score=31.18 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012184 428 TIENEVQILRQQKSAFEQEMERATSV 453 (469)
Q Consensus 428 ~~e~e~~~~~q~~~~~~~~~~~~~~~ 453 (469)
+.++|.++..+++.++..++++.+.+
T Consensus 64 q~~~e~~~r~e~k~~l~~ql~qv~~L 89 (131)
T PF11068_consen 64 QFEQEKQERLEQKNQLLQQLEQVQKL 89 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55666666666666666666655433
No 318
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=84.61 E-value=11 Score=41.65 Aligned_cols=19 Identities=5% Similarity=-0.092 Sum_probs=9.4
Q ss_pred eEEECCEEEEEccccCCCC
Q 012184 58 MVKWGTKLLILGGHYKKSS 76 (469)
Q Consensus 58 ~~~~~~~iy~~GG~~~~~~ 76 (469)
+...+++||++--|..++.
T Consensus 143 AFQD~~~LYlVMdY~pGGD 161 (1317)
T KOG0612|consen 143 AFQDERYLYLVMDYMPGGD 161 (1317)
T ss_pred HhcCccceEEEEecccCch
Confidence 3344555666555444443
No 319
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=84.48 E-value=14 Score=39.47 Aligned_cols=17 Identities=12% Similarity=0.333 Sum_probs=6.7
Q ss_pred hhhhhhhhhHhhhhhhh
Q 012184 369 EVRTENSRFREKIDEVN 385 (469)
Q Consensus 369 ~~~~~~~~l~~~~~~~~ 385 (469)
+.+....+++..+.+++
T Consensus 355 ear~~~~q~~~ql~~le 371 (980)
T KOG0980|consen 355 EARRRIEQYENQLLALE 371 (980)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344444444333
No 320
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=84.44 E-value=6.3 Score=38.26 Aligned_cols=51 Identities=24% Similarity=0.308 Sum_probs=32.5
Q ss_pred hhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 012184 369 EVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAEL 419 (469)
Q Consensus 369 ~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~ 419 (469)
.......-++.++++++..+.+.+.+++..+.++...+.++..++.+.++.
T Consensus 211 ~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~ 261 (344)
T PF12777_consen 211 EVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEA 261 (344)
T ss_dssp HHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455556677777777777777777777766666666666666555443
No 321
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=84.35 E-value=16 Score=36.53 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=24.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc-cCCCceeE
Q 012184 423 LESSQTIENEVQILRQQKSAFEQEMERATSVQT-QGSGGVWR 463 (469)
Q Consensus 423 l~~~~~~e~e~~~~~q~~~~~~~~~~~~~~~q~-q~~~~~~~ 463 (469)
.+....+.+++..++...+++.++...++...+ .+..|.||
T Consensus 156 ~~~~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk~~ktrG~wG 197 (448)
T COG1322 156 AEERSTLLEEIDRLLGEIQQLAQEAGNLTAALKGNKTRGNWG 197 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHH
Confidence 344445556666666666666666555544432 66778886
No 322
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=84.31 E-value=25 Score=31.84 Aligned_cols=68 Identities=19% Similarity=0.180 Sum_probs=36.6
Q ss_pred hhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHH
Q 012184 379 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM----LESSQTIENEVQILRQQKSAFEQE 446 (469)
Q Consensus 379 ~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~----l~~~~~~e~e~~~~~q~~~~~~~~ 446 (469)
.-|++++.+...|..|....-++|++..+.+..++..+.+.+.+ ...++.++.|+..+..+...+..+
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666666666666666676666543333 333334444444444444444443
No 323
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=84.15 E-value=11 Score=39.29 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=6.5
Q ss_pred HHHhhhHHHHHHHHHHH
Q 012184 423 LESSQTIENEVQILRQQ 439 (469)
Q Consensus 423 l~~~~~~e~e~~~~~q~ 439 (469)
|+..+.|++|++...++
T Consensus 215 le~kn~L~~e~~s~kk~ 231 (916)
T KOG0249|consen 215 LEDKNRLEQELESVKKQ 231 (916)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344333333333
No 324
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=84.12 E-value=18 Score=34.21 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 012184 428 TIENEVQILRQQKSAFEQE 446 (469)
Q Consensus 428 ~~e~e~~~~~q~~~~~~~~ 446 (469)
.+..++.+++.++.+.++.
T Consensus 151 ~L~~e~~~Lre~L~~rdel 169 (302)
T PF09738_consen 151 SLREELDELREQLKQRDEL 169 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443333
No 325
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.92 E-value=15 Score=36.90 Aligned_cols=78 Identities=26% Similarity=0.330 Sum_probs=41.6
Q ss_pred hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHH--------HHHHHHHHHHH----HHHhhhHHHHHHHHHHHH
Q 012184 373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFK--------LEAQIAELQKM----LESSQTIENEVQILRQQK 440 (469)
Q Consensus 373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~--------~~~~~~e~~~~----l~~~~~~e~e~~~~~q~~ 440 (469)
+...|++++++++....-.+.|+.+.++.+-+.+..-.+ .+..++|--.+ ++++-++|.|+-++++.+
T Consensus 44 eK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el 123 (772)
T KOG0999|consen 44 EKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQEL 123 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666655554221111 11122222111 344446777777777777
Q ss_pred HHHHHHHHHh
Q 012184 441 SAFEQEMERA 450 (469)
Q Consensus 441 ~~~~~~~~~~ 450 (469)
.....+.++.
T Consensus 124 ~~~q~E~erl 133 (772)
T KOG0999|consen 124 TNVQEENERL 133 (772)
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 326
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=83.83 E-value=5.5 Score=38.29 Aligned_cols=30 Identities=33% Similarity=0.347 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhh--hHHHHHHHHHHHHH
Q 012184 412 LEAQIAELQKMLESSQ--TIENEVQILRQQKS 441 (469)
Q Consensus 412 ~~~~~~e~~~~l~~~~--~~e~e~~~~~q~~~ 441 (469)
|+.++.-++++++... .++.+.+++.|+++
T Consensus 200 LEekLr~lq~qLqdE~prrqe~e~qELeqkle 231 (558)
T PF15358_consen 200 LEEKLRYLQQQLQDETPRRQEAEWQELEQKLE 231 (558)
T ss_pred HHHHHHHHHHHhcccCcchhhhhHHHHHHHHh
Confidence 3444444444444444 23455555555443
No 327
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=83.72 E-value=8.9 Score=42.06 Aligned_cols=6 Identities=33% Similarity=0.706 Sum_probs=2.4
Q ss_pred EEEEcc
Q 012184 18 MVFDLR 23 (469)
Q Consensus 18 ~~~d~~ 23 (469)
.+||+.
T Consensus 618 ir~~~~ 623 (1758)
T KOG0994|consen 618 IRYDPR 623 (1758)
T ss_pred eeccCC
Confidence 344443
No 328
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=83.60 E-value=23 Score=33.63 Aligned_cols=25 Identities=16% Similarity=0.326 Sum_probs=10.1
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHhh
Q 012184 382 DEVNSTHSELSKELSSVQGQLVAER 406 (469)
Q Consensus 382 ~~~~~~~~e~~~el~~~~~~l~~~~ 406 (469)
.+..+++..+..++..+++.+.+++
T Consensus 75 ~~sre~Nk~L~~Ev~~Lrqkl~E~q 99 (319)
T PF09789_consen 75 SESREQNKKLKEEVEELRQKLNEAQ 99 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444444444444443333
No 329
>PRK10780 periplasmic chaperone; Provisional
Probab=83.48 E-value=6.1 Score=33.78 Aligned_cols=27 Identities=11% Similarity=0.225 Sum_probs=10.7
Q ss_pred hhHhhhhhhhcchhhHHHHHHHHHHHH
Q 012184 376 RFREKIDEVNSTHSELSKELSSVQGQL 402 (469)
Q Consensus 376 ~l~~~~~~~~~~~~e~~~el~~~~~~l 402 (469)
+|+.+....+.+++.+..+++...+++
T Consensus 47 ~le~~~~~~q~el~~~~~elq~~~~~~ 73 (165)
T PRK10780 47 QLENEFKGRASELQRMETDLQAKMQKL 73 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444333333
No 330
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=83.46 E-value=16 Score=28.07 Aligned_cols=8 Identities=25% Similarity=0.692 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 012184 431 NEVQILRQ 438 (469)
Q Consensus 431 ~e~~~~~q 438 (469)
++++.++.
T Consensus 61 kRV~~LQ~ 68 (102)
T PF10205_consen 61 KRVEVLQE 68 (102)
T ss_pred HHHHHHHH
Confidence 33333333
No 331
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=83.38 E-value=15 Score=32.05 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=6.1
Q ss_pred HHHHhHHHHhhhhhh
Q 012184 355 AIKEDKRVLELSLTE 369 (469)
Q Consensus 355 ~l~~~~~~~~~~~~~ 369 (469)
.|+.+...|+..+..
T Consensus 100 rLkrELa~Le~~l~~ 114 (195)
T PF12761_consen 100 RLKRELAELEEKLSK 114 (195)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444433333
No 332
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=83.37 E-value=29 Score=30.02 Aligned_cols=68 Identities=16% Similarity=0.227 Sum_probs=42.7
Q ss_pred CccCcEEEEECCCCeEEEeeeCCC--CCCCCCCceEEEEcCcEEEEEecCCCC--cccCcEEEEECCCCceEeee
Q 012184 127 KLLNDVHFLDLETMTWDAVEVTQT--PPAPRYDHSAALHANRYLIVFGGCSHS--IFFNDLHVLDLQTNEWSQPE 197 (469)
Q Consensus 127 ~~~~~v~~~d~~t~~W~~~~~~g~--~p~~r~~~~~~~~~~~~l~v~GG~~~~--~~~~~i~~~d~~~~~W~~~~ 197 (469)
....++|++|..++.|..+..... --.|. + +.-++|..|.|+=|...+ ..-..+|+|++.++.-..+.
T Consensus 85 EgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK--~-i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly 156 (200)
T PF15525_consen 85 EGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK--Y-IEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELY 156 (200)
T ss_pred ccceeEEEEecCCCceEEEEecCcccccCCc--e-eEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEee
Confidence 357789999999998876644211 12344 2 333445555544443322 33468999999999988876
No 333
>PRK10698 phage shock protein PspA; Provisional
Probab=83.35 E-value=18 Score=32.59 Aligned_cols=38 Identities=11% Similarity=0.261 Sum_probs=15.3
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhh
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSE 390 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e 390 (469)
++.+++....+...+-.......++++++++.+..+.+
T Consensus 33 i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~ 70 (222)
T PRK10698 33 IQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVE 70 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444444444444443
No 334
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=83.34 E-value=30 Score=30.79 Aligned_cols=47 Identities=6% Similarity=0.196 Sum_probs=24.9
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHH
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQ 399 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~ 399 (469)
...+.++...+...+.+.....++....+++++..+++.+.+.++..
T Consensus 74 ~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii 120 (205)
T PRK06231 74 QRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEII 120 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555555555555544443
No 335
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=83.34 E-value=4.2 Score=40.52 Aligned_cols=47 Identities=28% Similarity=0.417 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 012184 408 RCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQ 454 (469)
Q Consensus 408 ~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~~~~~~q 454 (469)
++.+++.+++++.+++++..+.++++.++.+++++.+.+++++++..
T Consensus 250 ~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~ 296 (406)
T PF02388_consen 250 KLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELI 296 (406)
T ss_dssp HHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444555566666666666666666555543
No 336
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=83.29 E-value=14 Score=40.99 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 012184 428 TIENEVQILRQQKSAFEQEM 447 (469)
Q Consensus 428 ~~e~e~~~~~q~~~~~~~~~ 447 (469)
+++.+++.++++++++..+.
T Consensus 671 ~~e~~lk~~q~~~eq~~~E~ 690 (1317)
T KOG0612|consen 671 KLERKLKMLQNELEQENAEH 690 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554443
No 337
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.28 E-value=4.6 Score=36.05 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=10.1
Q ss_pred HHHHHHhHHHHhhhhhhh
Q 012184 353 IDAIKEDKRVLELSLTEV 370 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~ 370 (469)
+.+|+++.+.|...|.+.
T Consensus 227 i~~lkeeia~Lkk~L~qk 244 (305)
T KOG3990|consen 227 IQKLKEEIARLKKLLHQK 244 (305)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 666666666655444333
No 338
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=83.23 E-value=40 Score=31.54 Aligned_cols=204 Identities=19% Similarity=0.178 Sum_probs=0.0
Q ss_pred CCCCCCCcc-eEEEEECCEEEEEecc----------------CCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceE
Q 012184 98 GKVPVARGG-HSVTLVGSRLIIFGGE----------------DRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSA 160 (469)
Q Consensus 98 g~~p~~r~~-~~~~~~~~~lyi~GG~----------------~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~ 160 (469)
|++|..-.. |.++..-+.+++|||+ -.-..-.+-|+.||+.+++-+-+-..+-..+.....-.
T Consensus 29 G~~P~SGGDTYNAV~~vDd~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEV 108 (339)
T PF09910_consen 29 GPPPTSGGDTYNAVEWVDDFIYFGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEV 108 (339)
T ss_pred cCCCCCCCccceeeeeecceEEEeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCccccccch
Q ss_pred EEEc----CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEE
Q 012184 161 ALHA----NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL 236 (469)
Q Consensus 161 ~~~~----~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~ 236 (469)
.-+- ++.|++.=+.+... --+|..|.+++.-+.+. ..|.+ -.+...+...+-+ .+-......+.+|
T Consensus 109 SdIlYdP~~D~LLlAR~DGh~n--LGvy~ldr~~g~~~~L~---~~ps~---KG~~~~D~a~F~i--~~~~~g~~~i~~~ 178 (339)
T PF09910_consen 109 SDILYDPYEDRLLLARADGHAN--LGVYSLDRRTGKAEKLS---SNPSL---KGTLVHDYACFGI--NNFHKGVSGIHCL 178 (339)
T ss_pred hheeeCCCcCEEEEEecCCcce--eeeEEEcccCCceeecc---CCCCc---CceEeeeeEEEec--cccccCCceEEEE
Q ss_pred ECCCCcE--EEec---cCCCCCCCCCCCcceEEEEEcCCcEEEEE--eccCCCCCceEEEEECC-CCCCCCccccCCCch
Q 012184 237 NMTKLAW--SILT---SVKGRNPLASEGLSVCSAIIEGEHHLVAF--GGYNGKYNNEVFVMRLK-PRDIPRPKIFQSPAA 308 (469)
Q Consensus 237 d~~~~~W--~~~~---~~~~~~p~~r~~~s~~~~~~~~~~~l~v~--GG~~~~~~~~~~~~d~~-~~~w~~~~~~~~~~~ 308 (469)
|+.+++| ...+ .+.+.....|..-.++++ .+++|.| || +++.||- .....-...+..+..
T Consensus 179 Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~----ynR~faF~rGG--------i~vgnP~~~e~~~f~RlfDf~~~ 246 (339)
T PF09910_consen 179 DLISGKWVIESFDVSLSVDGGPVIRPELGAMASA----YNRLFAFVRGG--------IFVGNPYNGEEFRFYRLFDFPYT 246 (339)
T ss_pred EccCCeEEEEecccccCCCCCceEeeccccEEEE----eeeEEEEEecc--------EEEeCCCCCCceeEEEeeeccCC
Q ss_pred hhcchhhhHHHhhcc
Q 012184 309 AAAAASVTAAYALAK 323 (469)
Q Consensus 309 ~~~~~~~~~~~~~gg 323 (469)
+-+...++.+..=||
T Consensus 247 ~yap~R~nal~~gGG 261 (339)
T PF09910_consen 247 FYAPFRVNALPIGGG 261 (339)
T ss_pred ccCcceecceEeCCe
No 339
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=83.14 E-value=5.4 Score=37.39 Aligned_cols=25 Identities=12% Similarity=0.331 Sum_probs=9.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHH
Q 012184 423 LESSQTIENEVQILRQQKSAFEQEM 447 (469)
Q Consensus 423 l~~~~~~e~e~~~~~q~~~~~~~~~ 447 (469)
|+...+.|+.+++...+.+++..++
T Consensus 237 lqteaqvek~i~EfdiEre~LRAel 261 (561)
T KOG1103|consen 237 LQTEAQVEKLIEEFDIEREFLRAEL 261 (561)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444443333333333
No 340
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=83.05 E-value=10 Score=38.65 Aligned_cols=10 Identities=30% Similarity=0.338 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 012184 432 EVQILRQQKS 441 (469)
Q Consensus 432 e~~~~~q~~~ 441 (469)
..+.|.+++.
T Consensus 205 ~~q~Lleel~ 214 (546)
T KOG0977|consen 205 RVQTLLEELA 214 (546)
T ss_pred HHHHHHHHHH
Confidence 3334444444
No 341
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=82.93 E-value=18 Score=32.49 Aligned_cols=26 Identities=0% Similarity=0.203 Sum_probs=11.2
Q ss_pred hhhhhhhhhhhHhhhhhhhcchhhHH
Q 012184 367 LTEVRTENSRFREKIDEVNSTHSELS 392 (469)
Q Consensus 367 ~~~~~~~~~~l~~~~~~~~~~~~e~~ 392 (469)
+........++++++++.+..+.+.+
T Consensus 47 lA~~~a~~k~~e~~~~~~~~~~~~~~ 72 (219)
T TIGR02977 47 SARTIADKKELERRVSRLEAQVADWQ 72 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444333
No 342
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.89 E-value=17 Score=35.74 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=19.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 012184 418 ELQKMLESSQTIENEVQILRQQKSAFEQEME 448 (469)
Q Consensus 418 e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~ 448 (469)
..+++.+.+.+...+-.++|+++..+.+.++
T Consensus 397 niRKq~~DI~Kil~etreLqkq~ns~se~L~ 427 (521)
T KOG1937|consen 397 NIRKQEQDIVKILEETRELQKQENSESEALN 427 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555566666666777777776666654
No 343
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=82.87 E-value=28 Score=29.41 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=20.8
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHH
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSS 397 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~ 397 (469)
...+.++...+...+.+......+.....+++++.+.+.+.+..+
T Consensus 48 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ 92 (156)
T CHL00118 48 LKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQL 92 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444544444444444444444444444444444444444333
No 344
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=82.86 E-value=36 Score=30.78 Aligned_cols=140 Identities=21% Similarity=0.162 Sum_probs=70.0
Q ss_pred cCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCE-EEEEeccCCCCCccCcE
Q 012184 54 SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSR-LIIFGGEDRSRKLLNDV 132 (469)
Q Consensus 54 ~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-lyi~GG~~~~~~~~~~v 132 (469)
.......-.|.|++.||.+ .+|..|+.+++....- --..-+-|+++..+.. =++-|+.++ .+
T Consensus 118 Nam~ldP~enSi~~AgGD~-------~~y~~dlE~G~i~r~~----rGHtDYvH~vv~R~~~~qilsG~EDG------tv 180 (325)
T KOG0649|consen 118 NAMWLDPSENSILFAGGDG-------VIYQVDLEDGRIQREY----RGHTDYVHSVVGRNANGQILSGAEDG------TV 180 (325)
T ss_pred ceeEeccCCCcEEEecCCe-------EEEEEEecCCEEEEEE----cCCcceeeeeeecccCcceeecCCCc------cE
Confidence 3344444588999999743 3899999999977654 1122334444443322 233454443 26
Q ss_pred EEEECCCCeEEEe-eeCC--CCCCCCCCc--eEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCc
Q 012184 133 HFLDLETMTWDAV-EVTQ--TPPAPRYDH--SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRA 207 (469)
Q Consensus 133 ~~~d~~t~~W~~~-~~~g--~~p~~r~~~--~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~ 207 (469)
.++|..|.+-..+ .+.. .+..|-.+- .+...+.+ -++.||. ..+-.+++.+.+-+.+- |.|-.
T Consensus 181 RvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-WlvCGgG------p~lslwhLrsse~t~vf-----pipa~ 248 (325)
T KOG0649|consen 181 RVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-WLVCGGG------PKLSLWHLRSSESTCVF-----PIPAR 248 (325)
T ss_pred EEEeccccceeEEeccccChhhcCcccCceeEEEeccCc-eEEecCC------CceeEEeccCCCceEEE-----ecccc
Confidence 7788888765443 2211 122222333 33333344 4455543 23445565555444432 33333
Q ss_pred ceEEEEECCEEEEEe
Q 012184 208 GHAGITIDENWYIVG 222 (469)
Q Consensus 208 ~~~~~~~~~~l~v~G 222 (469)
-|-+..+++.+++.|
T Consensus 249 v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 249 VHLVDFVDDCVLIGG 263 (325)
T ss_pred eeEeeeecceEEEec
Confidence 333344455555555
No 345
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=82.81 E-value=12 Score=30.25 Aligned_cols=48 Identities=15% Similarity=0.285 Sum_probs=20.4
Q ss_pred hhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184 376 RFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML 423 (469)
Q Consensus 376 ~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l 423 (469)
.+-.++++..+..+..+.++.+++..+...+..+..++.-+..|+.++
T Consensus 72 ~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 72 RVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444333
No 346
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=82.75 E-value=47 Score=31.93 Aligned_cols=102 Identities=15% Similarity=0.073 Sum_probs=56.3
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCC---CCCcceEEEEECCCCeE
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKK---SSDSMIVRFIDLETNLC 91 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~---~~~~~~~~~~d~~t~~W 91 (469)
.+++||..+++-.-.- +.+-.++.+..- +..+|+..-+-+. +..+..+..||+.|..-
T Consensus 18 rv~viD~d~~k~lGmi------------------~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~ 79 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMI------------------DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP 79 (342)
T ss_dssp EEEEEETTTTEEEEEE------------------EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE
T ss_pred eEEEEECCCCcEEEEe------------------ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc
Confidence 7899999888743333 334555544444 5567766543322 22567799999999964
Q ss_pred EEeecCCCCCC-CCcc------eEEEEECC-EEEEEeccCCCCCccCcEEEEECCCCeEE
Q 012184 92 GVMETSGKVPV-ARGG------HSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWD 143 (469)
Q Consensus 92 ~~~~~~g~~p~-~r~~------~~~~~~~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~W~ 143 (469)
..=. .+|. +|.. .....-++ .+|++- -....+|.+.|+...+.-
T Consensus 80 ~~EI---~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N-----~TPa~SVtVVDl~~~kvv 131 (342)
T PF06433_consen 80 TGEI---EIPPKPRAQVVPYKNMFALSADGKFLYVQN-----FTPATSVTVVDLAAKKVV 131 (342)
T ss_dssp EEEE---EETTS-B--BS--GGGEEE-TTSSEEEEEE-----ESSSEEEEEEETTTTEEE
T ss_pred cceE---ecCCcchheecccccceEEccCCcEEEEEc-----cCCCCeEEEEECCCCcee
Confidence 3311 1222 2332 22222234 566652 124667999999887753
No 347
>PRK01742 tolB translocation protein TolB; Provisional
Probab=82.60 E-value=56 Score=32.76 Aligned_cols=140 Identities=12% Similarity=0.097 Sum_probs=67.8
Q ss_pred ceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCE-EEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCC
Q 012184 79 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSR-LIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD 157 (469)
Q Consensus 79 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~ 157 (469)
..++.+|+.++.-..+.. .+.. .......-+++ |++....++ ..++|.+|+.+.....+... .. ..
T Consensus 228 ~~i~i~dl~tg~~~~l~~---~~g~-~~~~~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~~--~~ 294 (429)
T PRK01742 228 SQLVVHDLRSGARKVVAS---FRGH-NGAPAFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQLTSG---AG--NN 294 (429)
T ss_pred cEEEEEeCCCCceEEEec---CCCc-cCceeECCCCCEEEEEEecCC----cEEEEEEECCCCCeEeeccC---CC--Cc
Confidence 348999998887666652 2211 11111112444 444332222 23589999988877665421 11 11
Q ss_pred ceEEEEcCcE-EEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEE
Q 012184 158 HSAALHANRY-LIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL 236 (469)
Q Consensus 158 ~~~~~~~~~~-l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~ 236 (469)
.......|+. |++...... ...+|.++..+..-..+. . .. .. ....-+++.+++.+. +.++.+
T Consensus 295 ~~~~wSpDG~~i~f~s~~~g---~~~I~~~~~~~~~~~~l~--~---~~-~~-~~~SpDG~~ia~~~~------~~i~~~ 358 (429)
T PRK01742 295 TEPSWSPDGQSILFTSDRSG---SPQVYRMSASGGGASLVG--G---RG-YS-AQISADGKTLVMING------DNVVKQ 358 (429)
T ss_pred CCEEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEec--C---CC-CC-ccCCCCCCEEEEEcC------CCEEEE
Confidence 2222223444 444332222 246788777655433321 1 11 11 111114444444332 357889
Q ss_pred ECCCCcEEEec
Q 012184 237 NMTKLAWSILT 247 (469)
Q Consensus 237 d~~~~~W~~~~ 247 (469)
|+.+..+..+.
T Consensus 359 Dl~~g~~~~lt 369 (429)
T PRK01742 359 DLTSGSTEVLS 369 (429)
T ss_pred ECCCCCeEEec
Confidence 99998887654
No 348
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=82.46 E-value=16 Score=39.62 Aligned_cols=42 Identities=19% Similarity=0.348 Sum_probs=18.9
Q ss_pred hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHH
Q 012184 373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEA 414 (469)
Q Consensus 373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~ 414 (469)
++.++.+-+....+....+..++..++.++.+.-+++.+++.
T Consensus 398 ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~ 439 (1200)
T KOG0964|consen 398 EIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELES 439 (1200)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444444444444433
No 349
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=82.22 E-value=25 Score=30.67 Aligned_cols=52 Identities=13% Similarity=0.175 Sum_probs=30.9
Q ss_pred hhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 012184 365 LSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI 416 (469)
Q Consensus 365 ~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~ 416 (469)
..|.....-.++|+.++.+.+..+++....|+..+........-..+.+.++
T Consensus 60 AaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~ 111 (188)
T PF05335_consen 60 AALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQL 111 (188)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666777777777777777777666666555554444333333333
No 350
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=82.12 E-value=16 Score=36.99 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 012184 430 ENEVQILRQQKSAFEQEMERA 450 (469)
Q Consensus 430 e~e~~~~~q~~~~~~~~~~~~ 450 (469)
..++.+.++++...+.+++.+
T Consensus 290 ~~~l~~~~~~l~~~~~~l~~a 310 (457)
T TIGR01000 290 KQEITDLNQKLLELESKIKSL 310 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555544433
No 351
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=81.87 E-value=21 Score=27.53 Aligned_cols=34 Identities=29% Similarity=0.294 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 012184 408 RCFKLEAQIAELQKMLESSQTIENEVQILRQQKS 441 (469)
Q Consensus 408 ~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~ 441 (469)
...+++++..+++..++++..+++++.++.+--.
T Consensus 50 ~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~ 83 (99)
T PF10046_consen 50 NLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVY 83 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555554444444443333
No 352
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.87 E-value=19 Score=31.34 Aligned_cols=32 Identities=13% Similarity=0.168 Sum_probs=13.1
Q ss_pred cchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012184 386 STHSELSKELSSVQGQLVAERSRCFKLEAQIA 417 (469)
Q Consensus 386 ~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~ 417 (469)
+++.+..+-..+.+.+.++.+.+...+..++.
T Consensus 89 re~e~~~q~k~Eiersi~~a~~kie~lkkql~ 120 (222)
T KOG3215|consen 89 REIENLVQKKLEIERSIQKARNKIELLKKQLH 120 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444443
No 353
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=81.62 E-value=19 Score=39.03 Aligned_cols=9 Identities=11% Similarity=0.098 Sum_probs=4.5
Q ss_pred CcEEEEEec
Q 012184 270 EHHLVAFGG 278 (469)
Q Consensus 270 ~~~l~v~GG 278 (469)
+++.+|--|
T Consensus 134 NPYyIV~QG 142 (1200)
T KOG0964|consen 134 NPYYIVPQG 142 (1200)
T ss_pred CCceEeech
Confidence 345555555
No 354
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=81.25 E-value=6.8 Score=37.27 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=8.2
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 012184 426 SQTIENEVQILRQQKSAFE 444 (469)
Q Consensus 426 ~~~~e~e~~~~~q~~~~~~ 444 (469)
++++++++.+.+..+..+|
T Consensus 70 i~~L~~~Ik~r~~~l~DmE 88 (330)
T PF07851_consen 70 IEKLEEDIKERRCQLFDME 88 (330)
T ss_pred HHHHHHHHHHHHhhHHHHH
Confidence 3344444444444444443
No 355
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=81.03 E-value=15 Score=35.53 Aligned_cols=37 Identities=14% Similarity=0.097 Sum_probs=20.2
Q ss_pred hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHH
Q 012184 373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRC 409 (469)
Q Consensus 373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~ 409 (469)
+...++.+........++.|-+|+.+|.++.++.+++
T Consensus 35 q~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 35 QLVILRAESRAIKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555666666666666666654443
No 356
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=81.03 E-value=23 Score=28.13 Aligned_cols=42 Identities=12% Similarity=0.209 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHH
Q 012184 406 RSRCFKLEAQIAELQKMLESSQT--IENEVQILRQQKSAFEQEM 447 (469)
Q Consensus 406 ~~~~~~~~~~~~e~~~~l~~~~~--~e~e~~~~~q~~~~~~~~~ 447 (469)
+.++.+.+.+|.|.+.+|+..+. -...+...++++.....+|
T Consensus 69 q~ki~~~~~kV~ere~eL~eA~~~G~~~KI~K~~~KL~ea~~eL 112 (115)
T PF06476_consen 69 QQKIAEKQQKVAEREAELKEAQAKGDSDKIAKRQKKLAEAKAEL 112 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666655552 1144444444444444444
No 357
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=80.95 E-value=35 Score=29.35 Aligned_cols=47 Identities=11% Similarity=0.190 Sum_probs=24.2
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHH
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQ 399 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~ 399 (469)
...+.++...+...+........+.....++.+..+.+.+.+.+++.
T Consensus 44 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii 90 (173)
T PRK13453 44 KDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKIL 90 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555544443
No 358
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=80.94 E-value=12 Score=36.12 Aligned_cols=11 Identities=27% Similarity=0.453 Sum_probs=4.4
Q ss_pred hhHHHHHHhHH
Q 012184 351 TDIDAIKEDKR 361 (469)
Q Consensus 351 ~~~~~l~~~~~ 361 (469)
.++.++++++.
T Consensus 107 kkiqal~keke 117 (552)
T KOG2129|consen 107 KKIQALFKEKE 117 (552)
T ss_pred HHHHHhhcccc
Confidence 33444444333
No 359
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=80.88 E-value=36 Score=29.36 Aligned_cols=48 Identities=8% Similarity=0.172 Sum_probs=26.6
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHH
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG 400 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~ 400 (469)
...+.++...+...+........+....+++++..+++.+.+.++...
T Consensus 44 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~ 91 (175)
T PRK14472 44 LSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIR 91 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555666555555555566666666555555554433
No 360
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=80.86 E-value=11 Score=40.93 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 012184 392 SKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEM 447 (469)
Q Consensus 392 ~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~ 447 (469)
+.+.+..+.+...++.++.+++.++.++-+...+..+|+++.+..++..+.+.+.+
T Consensus 344 ~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~ 399 (754)
T TIGR01005 344 LMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNY 399 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444444333333
No 361
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=80.82 E-value=15 Score=31.00 Aligned_cols=47 Identities=26% Similarity=0.308 Sum_probs=20.4
Q ss_pred hHhhhhhhhcchhhHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHH
Q 012184 377 FREKIDEVNSTHSELSKELSSVQGQLVAERS---RCFKLEAQIAELQKML 423 (469)
Q Consensus 377 l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~---~~~~~~~~~~e~~~~l 423 (469)
.+.++...+.++..++.+|.....++..++. -..+|+.++++++.+.
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~ 67 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKN 67 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444433 3344444444444443
No 362
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=80.72 E-value=13 Score=31.32 Aligned_cols=9 Identities=11% Similarity=0.398 Sum_probs=3.2
Q ss_pred hhhhhhhcc
Q 012184 379 EKIDEVNST 387 (469)
Q Consensus 379 ~~~~~~~~~ 387 (469)
.++.+++..
T Consensus 34 ~ql~~~d~~ 42 (155)
T PF06810_consen 34 TQLKEADKQ 42 (155)
T ss_pred HHHHHHHHH
Confidence 333333333
No 363
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=80.70 E-value=26 Score=36.42 Aligned_cols=11 Identities=18% Similarity=-0.118 Sum_probs=5.7
Q ss_pred EEEccCCceee
Q 012184 19 VFDLRSLAWSN 29 (469)
Q Consensus 19 ~~d~~~~~W~~ 29 (469)
.||+..+-|.+
T Consensus 34 ~~~~~~Gg~d~ 44 (961)
T KOG4673|consen 34 NFDNALGGDDK 44 (961)
T ss_pred cCCcccCCCCc
Confidence 34555555544
No 364
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=80.60 E-value=28 Score=27.99 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012184 429 IENEVQILRQQKSAFEQEM 447 (469)
Q Consensus 429 ~e~e~~~~~q~~~~~~~~~ 447 (469)
+..++..++..++.++..+
T Consensus 86 l~~~l~~l~~~~~k~e~~l 104 (126)
T PF13863_consen 86 LKAELEELKSEISKLEEKL 104 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 365
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=80.51 E-value=14 Score=28.42 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 012184 428 TIENEVQILRQQKSAFEQEME 448 (469)
Q Consensus 428 ~~e~e~~~~~q~~~~~~~~~~ 448 (469)
.|.=..++|.+..+.+..+++
T Consensus 51 SL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 51 SLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 366
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=80.39 E-value=21 Score=35.04 Aligned_cols=106 Identities=21% Similarity=0.290 Sum_probs=0.0
Q ss_pred CCCCCccccchhhhHHHHHHhHHHHhhhhhhhhh----hhhhhHhhhhhhhcchhhHHHHHHH----HHHHHHHhhhHHH
Q 012184 339 GIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRT----ENSRFREKIDEVNSTHSELSKELSS----VQGQLVAERSRCF 410 (469)
Q Consensus 339 ~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~e~~~el~~----~~~~l~~~~~~~~ 410 (469)
..........+..++.++++....++..+...+. +...+.+.+++..-+.+.++.++.+ .+.+...+|+.+.
T Consensus 207 ~~~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa 286 (395)
T PF10267_consen 207 SSQQNLGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELA 286 (395)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH--------HHHHHHHHhhhHHHHHH-HHHHHHHHHH
Q 012184 411 KLEAQIA--------ELQKMLESSQTIENEVQ-ILRQQKSAFE 444 (469)
Q Consensus 411 ~~~~~~~--------e~~~~l~~~~~~e~e~~-~~~q~~~~~~ 444 (469)
..+..++ ++++-++..|..-..+| +.+|+..++|
T Consensus 287 ~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE~~~~Qq~~q~e 329 (395)
T PF10267_consen 287 SMEEKMAYQSYERARDIWEVMESCQTRISKLEQQQQQQVVQLE 329 (395)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhc
No 367
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=80.38 E-value=3.4 Score=38.08 Aligned_cols=37 Identities=16% Similarity=0.288 Sum_probs=19.2
Q ss_pred hhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHh
Q 012184 369 EVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE 405 (469)
Q Consensus 369 ~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~ 405 (469)
..+..+..|+++...+...+..++.++++.+.+|+..
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~ 213 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERM 213 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555444
No 368
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=80.36 E-value=15 Score=30.83 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=19.2
Q ss_pred hhhHhhhhhhhcchhhHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHH
Q 012184 375 SRFREKIDEVNSTHSELSKELSSVQGQL--VAERSRCFKLEAQIAELQKML 423 (469)
Q Consensus 375 ~~l~~~~~~~~~~~~e~~~el~~~~~~l--~~~~~~~~~~~~~~~e~~~~l 423 (469)
..++.++++++......+.|+..+...| .+.|+.+++|..++.+-+++|
T Consensus 89 ~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl 139 (201)
T KOG4603|consen 89 VALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERL 139 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444434444444444333322 222344444444444444443
No 369
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=80.26 E-value=21 Score=33.73 Aligned_cols=52 Identities=19% Similarity=0.350 Sum_probs=28.9
Q ss_pred hhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 012184 375 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 426 (469)
Q Consensus 375 ~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~ 426 (469)
..|+.+++++++.+.++.++..+...++..++.....++.++.+++.++.+.
T Consensus 115 d~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 115 DLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQR 166 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555565655555555443
No 370
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=80.18 E-value=38 Score=29.24 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=13.8
Q ss_pred hhhhhHhhhhhhhcchhhHHHHHHHHHH
Q 012184 373 ENSRFREKIDEVNSTHSELSKELSSVQG 400 (469)
Q Consensus 373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~ 400 (469)
+.++++.+.+.+.+.++|...+|..++.
T Consensus 43 DFeqLkien~~l~~kIeERn~eL~~Lk~ 70 (177)
T PF13870_consen 43 DFEQLKIENQQLNEKIEERNKELLKLKK 70 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555444443
No 371
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=80.03 E-value=25 Score=38.29 Aligned_cols=105 Identities=16% Similarity=0.159 Sum_probs=0.0
Q ss_pred hhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh---
Q 012184 351 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ--- 427 (469)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~--- 427 (469)
.++....+....+-....+...+...++..++...+.+.....++..+.....+++++..+...+...+.++++.+.
T Consensus 460 ~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l 539 (1195)
T KOG4643|consen 460 SRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELL 539 (1195)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 012184 428 -TIENEVQILRQQKSAFEQEMERATSVQTQ 456 (469)
Q Consensus 428 -~~e~e~~~~~q~~~~~~~~~~~~~~~q~q 456 (469)
-+|+|.+.++.+++.+... .+-..+.+|
T Consensus 540 ~~lE~ENa~LlkqI~~Lk~t-~qn~~~LEq 568 (1195)
T KOG4643|consen 540 GNLEEENAHLLKQIQSLKTT-SQNGALLEQ 568 (1195)
T ss_pred hhHHHHHHHHHHHHHHHHHH-hHHHHHHHH
No 372
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=79.80 E-value=62 Score=31.47 Aligned_cols=121 Identities=20% Similarity=0.124 Sum_probs=66.6
Q ss_pred CEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccC---CCCCccCcEEEEECCC
Q 012184 63 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGED---RSRKLLNDVHFLDLET 139 (469)
Q Consensus 63 ~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~---~~~~~~~~v~~~d~~t 139 (469)
..+|+.-....+ ..+.++++|..+++-...-..|.. +| +.+..-+..||+.-.+- ..+...+.|.+||+.|
T Consensus 13 ~~v~V~d~~~~~--~~~~v~ViD~~~~~v~g~i~~G~~--P~--~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t 86 (352)
T TIGR02658 13 RRVYVLDPGHFA--ATTQVYTIDGEAGRVLGMTDGGFL--PN--PVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT 86 (352)
T ss_pred CEEEEECCcccc--cCceEEEEECCCCEEEEEEEccCC--Cc--eeECCCCCEEEEEeccccccccCCCCCEEEEEECcc
Confidence 456776442211 236799999998765443333322 22 22222345788886632 1223477899999999
Q ss_pred CeEEEeeeCCCCCCCC-----CCceEEEEc-CcEEEEEecCCCCcccCcEEEEECCCCceEe
Q 012184 140 MTWDAVEVTQTPPAPR-----YDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ 195 (469)
Q Consensus 140 ~~W~~~~~~g~~p~~r-----~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~ 195 (469)
.+-..--+.+ +.|| .-....... ++.|||.- . ...+.+-++|+.+.+-..
T Consensus 87 ~~~~~~i~~p--~~p~~~~~~~~~~~~ls~dgk~l~V~n-~---~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 87 HLPIADIELP--EGPRFLVGTYPWMTSLTPDNKTLLFYQ-F---SPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred CcEEeEEccC--CCchhhccCccceEEECCCCCEEEEec-C---CCCCEEEEEECCCCcEEE
Confidence 8754322222 2333 112222222 44677752 1 224678999998887654
No 373
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=79.69 E-value=43 Score=30.24 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 012184 428 TIENEVQILRQQKSAFEQEME 448 (469)
Q Consensus 428 ~~e~e~~~~~q~~~~~~~~~~ 448 (469)
+++..+..+.+++.+.+...+
T Consensus 117 ~l~~~~~~Le~Ki~e~~~~~~ 137 (225)
T COG1842 117 KLKKQLAALEQKIAELRAKKE 137 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555554444433
No 374
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=79.68 E-value=41 Score=29.29 Aligned_cols=45 Identities=11% Similarity=0.206 Sum_probs=22.2
Q ss_pred HHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHH
Q 012184 354 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSV 398 (469)
Q Consensus 354 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~ 398 (469)
..+.++...+...+.+......+....+.+++..+.+.+.+.++.
T Consensus 51 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~i 95 (184)
T CHL00019 51 DLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEI 95 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555444555555555555555544444443
No 375
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=79.67 E-value=23 Score=29.10 Aligned_cols=72 Identities=17% Similarity=0.320 Sum_probs=0.0
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHhhh
Q 012184 381 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQT-IENEVQILRQQKSAFEQEMERATS 452 (469)
Q Consensus 381 ~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~-~e~e~~~~~q~~~~~~~~~~~~~~ 452 (469)
+...+...+++++...++++..+..-.++.+..++++++++.|+.+.. .-+|++.++..+++..+++.-+.+
T Consensus 33 ls~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~ 105 (159)
T PF04949_consen 33 LSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQ 105 (159)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHH
No 376
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=79.66 E-value=23 Score=32.15 Aligned_cols=45 Identities=20% Similarity=0.196 Sum_probs=21.2
Q ss_pred hhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 012184 383 EVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 427 (469)
Q Consensus 383 ~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~ 427 (469)
+...+.+.....|..+--....+.++++.-+.+++..+++++..|
T Consensus 116 ~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lq 160 (338)
T KOG3647|consen 116 AIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQ 160 (338)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333334444555555555555666665555
No 377
>PRK11281 hypothetical protein; Provisional
Probab=79.56 E-value=16 Score=41.25 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012184 391 LSKELSSVQGQLVAERSRCFKLEAQIA 417 (469)
Q Consensus 391 ~~~el~~~~~~l~~~~~~~~~~~~~~~ 417 (469)
+++.+.+.+.+++..|+.+.+++.++.
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi 152 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLV 152 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 378
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=79.50 E-value=23 Score=29.73 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 012184 390 ELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE 424 (469)
Q Consensus 390 e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~ 424 (469)
.+..+.+.++.++.+++.+...|+.+++++.+++.
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555444444443
No 379
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=79.47 E-value=41 Score=29.20 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 012184 428 TIENEVQILRQQKSAFEQEME 448 (469)
Q Consensus 428 ~~e~e~~~~~q~~~~~~~~~~ 448 (469)
..++.++.|+++...+++.+.
T Consensus 162 ~aERsVakLeke~DdlE~kl~ 182 (205)
T KOG1003|consen 162 FAERRVAKLEKERDDLEEKLE 182 (205)
T ss_pred HHHHHHHHHcccHHHHHHhhH
Confidence 344555555555555555544
No 380
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=79.38 E-value=53 Score=30.38 Aligned_cols=230 Identities=13% Similarity=0.085 Sum_probs=106.1
Q ss_pred CceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEc--cccCCCC-CcceEEEEECC-CCeEEEeecC-
Q 012184 25 LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILG--GHYKKSS-DSMIVRFIDLE-TNLCGVMETS- 97 (469)
Q Consensus 25 ~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~G--G~~~~~~-~~~~~~~~d~~-t~~W~~~~~~- 97 (469)
.+|+........ ..+..+....+++. +++|+++- +...... .....+....+ -.+|+.....
T Consensus 30 ~tWs~~~~v~~~-----------~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~ 98 (275)
T PF13088_consen 30 KTWSEPRIVADG-----------PKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLP 98 (275)
T ss_dssp TEEEEEEEEETS-----------TBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEH
T ss_pred CeeCCCEEEeec-----------cccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccc
Confidence 569988776432 00123344444443 88888885 2222211 22222355555 3479887521
Q ss_pred -C---CCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCC-CeEEEeeeCCCCCCCCCCc-eEEEEcCcEEEEE
Q 012184 98 -G---KVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET-MTWDAVEVTQTPPAPRYDH-SAALHANRYLIVF 171 (469)
Q Consensus 98 -g---~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t-~~W~~~~~~g~~p~~r~~~-~~~~~~~~~l~v~ 171 (469)
+ ..+.+-.+..+..-++.+++. .+.........+..|+.+. .+|+...+.. +...... +++...++.|+++
T Consensus 99 ~~~~~~~~~~~~~~~i~~~~G~l~~~-~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~ 175 (275)
T PF13088_consen 99 PGWFGNFSGPGRGPPIQLPDGRLIAP-YYHESGGSFSAFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAV 175 (275)
T ss_dssp HHCCCSCEECSEEEEEEECTTEEEEE-EEEESSCEEEEEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEE
T ss_pred cccccceeccceeeeeEecCCCEEEE-EeeccccCcceEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEE
Confidence 0 011111222234447777776 2211111133344455554 4698887432 2222223 3334567888888
Q ss_pred ecCCCCcccCcEEEE-ECC-CCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEecc
Q 012184 172 GGCSHSIFFNDLHVL-DLQ-TNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 248 (469)
Q Consensus 172 GG~~~~~~~~~i~~~-d~~-~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~ 248 (469)
-... .. ..++.+ ... -.+|+.+... ..|.+.....++.. ++.++++.........-.+++-.-...+|.....
T Consensus 176 ~R~~-~~--~~~~~~~S~D~G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~ 251 (275)
T PF13088_consen 176 FRTE-GN--DDIYISRSTDGGRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKT 251 (275)
T ss_dssp EEEC-SS--TEEEEEEESSTTSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEE
T ss_pred EEcc-CC--CcEEEEEECCCCCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEE
Confidence 7543 11 133333 332 3569986532 45666665555554 4577777662112111223333334778986544
Q ss_pred CCCCCCCCCCCcceEEEEEcCCcEEEE
Q 012184 249 VKGRNPLASEGLSVCSAIIEGEHHLVA 275 (469)
Q Consensus 249 ~~~~~p~~r~~~s~~~~~~~~~~~l~v 275 (469)
+.... ....+...++..+++.|+|
T Consensus 252 i~~~~---~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 252 IDDGP---NGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp EEEEE----CCEEEEEEEEEETTEEEE
T ss_pred EeCCC---CCcEECCeeEEeCCCcCCC
Confidence 32111 1223333333333557764
No 381
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=79.37 E-value=44 Score=32.71 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=10.9
Q ss_pred hhhhhHhhhhhhhcchhhHHHHHH
Q 012184 373 ENSRFREKIDEVNSTHSELSKELS 396 (469)
Q Consensus 373 ~~~~l~~~~~~~~~~~~e~~~el~ 396 (469)
+++.++-.++.+++++.+++..+.
T Consensus 298 e~Enlqmr~qqleeentelRs~~a 321 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIA 321 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555554444444433
No 382
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=79.35 E-value=19 Score=32.43 Aligned_cols=90 Identities=13% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh----hHHHH
Q 012184 357 KEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENE 432 (469)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~----~~e~e 432 (469)
+-....|.............+++++...++.++++.++-+..|.+... ++..|++...++-.+.-.++ +|++|
T Consensus 128 ~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~---~L~~Le~~W~~~v~kn~eie~a~~~Le~e 204 (221)
T PF05700_consen 128 KYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGE---ELRYLEQRWKELVSKNLEIEVACEELEQE 204 (221)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012184 433 VQILRQQKSAFEQEMER 449 (469)
Q Consensus 433 ~~~~~q~~~~~~~~~~~ 449 (469)
+.+++++....++..++
T Consensus 205 i~~l~~~~~~~~~~~~~ 221 (221)
T PF05700_consen 205 IEQLKRKAAELKENQQQ 221 (221)
T ss_pred HHHHHHHHHHHhccccC
No 383
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=79.26 E-value=31 Score=31.47 Aligned_cols=26 Identities=4% Similarity=0.189 Sum_probs=12.0
Q ss_pred hHHHHhhhhhhhhhhhhhhHhhhhhh
Q 012184 359 DKRVLELSLTEVRTENSRFREKIDEV 384 (469)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 384 (469)
+...++..+...-.+...+++++...
T Consensus 39 ~~~~~~~~i~~aP~~~~~l~~~l~~l 64 (240)
T PF12795_consen 39 RAAEYQKQIDQAPKEIRELQKELEAL 64 (240)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 33333444444444555555555444
No 384
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=79.25 E-value=6.3 Score=36.59 Aligned_cols=63 Identities=14% Similarity=0.223 Sum_probs=31.2
Q ss_pred chhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 012184 387 THSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERA 450 (469)
Q Consensus 387 ~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~~~ 450 (469)
..+++..+...++.++..++..+..+...+. ..+..+.+-++|+++.+.+.++++++.++..+
T Consensus 126 ~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~-ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l 188 (262)
T PF14257_consen 126 SSEDVTEQYVDLEARLKNLEAEEERLLELLE-KAKTVEDLLEIERELSRVRSEIEQLEGQLKYL 188 (262)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555444444444444333 11134444456666666666666666655433
No 385
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=79.23 E-value=23 Score=30.98 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184 390 ELSKELSSVQGQLVAERSRCFKLEAQIAELQKM 422 (469)
Q Consensus 390 e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~ 422 (469)
.+++++.+....+.+..+.+.+++..+-+++++
T Consensus 114 ~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 114 KLEKKIEEKEAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445555555555555554
No 386
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=79.10 E-value=41 Score=28.95 Aligned_cols=48 Identities=6% Similarity=0.122 Sum_probs=24.4
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHH
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG 400 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~ 400 (469)
...+.++...+...+........+..+.+.+.+..+.+.+.+.++...
T Consensus 42 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~ 89 (173)
T PRK13460 42 LKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVA 89 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555555555555444433
No 387
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=78.98 E-value=46 Score=30.66 Aligned_cols=43 Identities=5% Similarity=0.170 Sum_probs=20.0
Q ss_pred HHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHH
Q 012184 354 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELS 396 (469)
Q Consensus 354 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~ 396 (469)
..+.++...+...+.+......+.++..++.+..+++.+++.+
T Consensus 32 ~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~ 74 (250)
T PRK14474 32 QVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRA 74 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555544444444444444444444444433
No 388
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=78.96 E-value=11 Score=38.13 Aligned_cols=21 Identities=19% Similarity=0.509 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 012184 428 TIENEVQILRQQKSAFEQEME 448 (469)
Q Consensus 428 ~~e~e~~~~~q~~~~~~~~~~ 448 (469)
++.++++++..++..++++++
T Consensus 386 ~l~~~~~~l~~~~~~l~~~l~ 406 (451)
T PF03961_consen 386 ELKEELKELKEELKELKEELE 406 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555554
No 389
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=78.88 E-value=44 Score=31.69 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=10.7
Q ss_pred hhhHhhhhhhhcchhhHHHHHHHHHH
Q 012184 375 SRFREKIDEVNSTHSELSKELSSVQG 400 (469)
Q Consensus 375 ~~l~~~~~~~~~~~~e~~~el~~~~~ 400 (469)
.++..++..++.++.++++++...+.
T Consensus 138 ~~~~~~i~~l~~~~~~~~~~~~~~~~ 163 (301)
T PF14362_consen 138 ARLDAEIAALQAEIDQLEKEIDRAQQ 163 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444333
No 390
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=78.86 E-value=26 Score=30.71 Aligned_cols=62 Identities=18% Similarity=0.261 Sum_probs=26.9
Q ss_pred hcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHH
Q 012184 385 NSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM----LESSQTIENEVQILRQQKSAFEQE 446 (469)
Q Consensus 385 ~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~----l~~~~~~e~e~~~~~q~~~~~~~~ 446 (469)
+..+.+.+.+..+++.++.+++.++.+++++.+.+..+ ...+.+++.+.+.+.++....+.+
T Consensus 116 e~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 116 EKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELE 181 (190)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444455555555544333222 223334444555555554444433
No 391
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=78.82 E-value=36 Score=31.34 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184 391 LSKELSSVQGQLVAERSRCFKLEAQIAELQKML 423 (469)
Q Consensus 391 ~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l 423 (469)
..+.+...+.++...++.+.+.+..++|++++.
T Consensus 198 ~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i 230 (269)
T PF05278_consen 198 KDRKLELKKEELEELEEELKQKEKEVKEIKERI 230 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444443
No 392
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=78.69 E-value=25 Score=28.75 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=22.9
Q ss_pred hhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 012184 376 RFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES 425 (469)
Q Consensus 376 ~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~ 425 (469)
.++..++..+..+.+....+.....++..++......++....|..++..
T Consensus 23 ~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~ 72 (135)
T TIGR03495 23 NARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQ 72 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555555554444444434333344443333
No 393
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=78.18 E-value=47 Score=29.11 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=12.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 012184 398 VQGQLVAERSRCFKLEAQIAELQKMLESSQ 427 (469)
Q Consensus 398 ~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~ 427 (469)
++.++..++....+++.++.+++.+.+..+
T Consensus 125 l~~~i~~L~~e~~~L~~~~~~l~~~~e~~e 154 (189)
T PF10211_consen 125 LEEEIEELEEEKEELEKQVQELKNKCEQLE 154 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444443333
No 394
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=78.17 E-value=18 Score=25.71 Aligned_cols=66 Identities=23% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 012184 362 VLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 427 (469)
Q Consensus 362 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~ 427 (469)
.++......+.....+.++++..+..+..+.+|-...-.++...-..+.+|..+++.++++++...
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 395
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=78.02 E-value=24 Score=29.87 Aligned_cols=65 Identities=18% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH---------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 012184 393 KELSSVQGQLVAERSRCFKLEAQIAELQ---------KMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQG 457 (469)
Q Consensus 393 ~el~~~~~~l~~~~~~~~~~~~~~~e~~---------~~l~~~~~~e~e~~~~~q~~~~~~~~~~~~~~~q~q~ 457 (469)
+|++..+.-++..++...++|.-+-..| ++-.++++|+.=.+.++|+++.+|.++++--...+++
T Consensus 105 ~Elq~mr~~ln~FR~qm~dlE~~l~~QQalvy~hMSeeER~EaeQLQsLR~avRqElqELE~QL~DRl~~l~e~ 178 (179)
T PF14723_consen 105 QELQQMRRSLNSFREQMMDLELHLMRQQALVYRHMSEEEREEAEQLQSLRSAVRQELQELEFQLEDRLLQLREQ 178 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
No 396
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=78.01 E-value=15 Score=38.10 Aligned_cols=78 Identities=22% Similarity=0.304 Sum_probs=0.0
Q ss_pred hhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHH-----------------------------HHHHHHHHHhhhH
Q 012184 379 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI-----------------------------AELQKMLESSQTI 429 (469)
Q Consensus 379 ~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~-----------------------------~e~~~~l~~~~~~ 429 (469)
..+++++.++.+++.++..++.++..++.++.-++... +++.+-.....++
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREA 150 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccc
Q 012184 430 ENEVQILRQQKSAFEQEMERATSVQTQ 456 (469)
Q Consensus 430 e~e~~~~~q~~~~~~~~~~~~~~~q~q 456 (469)
++++++++++++.+++++..+.....+
T Consensus 151 ~~~~~~~~~~l~~l~~~l~~l~~~~~~ 177 (525)
T TIGR02231 151 ERRIRELEKQLSELQNELNALLTGKSQ 177 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcc
No 397
>PF14992 TMCO5: TMCO5 family
Probab=78.01 E-value=11 Score=34.78 Aligned_cols=94 Identities=15% Similarity=0.223 Sum_probs=0.0
Q ss_pred cccchhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 012184 345 SEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE 424 (469)
Q Consensus 345 s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~ 424 (469)
++.++ +.++.++...............+..+.+++.........++++..+....++..+-+.+.-..+.++++.++
T Consensus 85 ~~~el---q~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~ 161 (280)
T PF14992_consen 85 SVQEL---QRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLR 161 (280)
T ss_pred hhhhh---hhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhHHHHHHHHHHHHHH
Q 012184 425 SSQTIENEVQILRQQKSA 442 (469)
Q Consensus 425 ~~~~~e~e~~~~~q~~~~ 442 (469)
++++ ++|+-.+..+...
T Consensus 162 rmE~-ekE~~lLe~el~k 178 (280)
T PF14992_consen 162 RMEE-EKEMLLLEKELSK 178 (280)
T ss_pred HHHH-HHHHHHHHHHHHH
No 398
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=77.95 E-value=46 Score=32.78 Aligned_cols=109 Identities=15% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHh----hhhhhhcchhhHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHH
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFRE----KIDEVNSTHSELSKELSSVQGQLVAE----RSRCFKLEAQIAELQKMLE 424 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~e~~~el~~~~~~l~~~----~~~~~~~~~~~~e~~~~l~ 424 (469)
+..+.++..++...........+.|+. +++...+.++|.+-..+.+++++-.. +..+..|+++++..+++.+
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~ 293 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMA 293 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred Hhh-----hHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcee
Q 012184 425 SSQ-----TIENEVQILRQQKSAFEQEMERATSVQTQGSGGVW 462 (469)
Q Consensus 425 ~~~-----~~e~e~~~~~q~~~~~~~~~~~~~~~q~q~~~~~~ 462 (469)
..- ++++-++-.+-.+..+| ...+++-.|-..-+-.|
T Consensus 294 Yqs~eRaRdi~E~~Es~qtRisklE-~~~~Qq~~q~e~~~n~~ 335 (395)
T PF10267_consen 294 YQSYERARDIWEVMESCQTRISKLE-QQQQQQVVQLEGTENSR 335 (395)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH-HHHhhhhhhhccccccc
No 399
>PRK14011 prefoldin subunit alpha; Provisional
Probab=77.94 E-value=33 Score=28.53 Aligned_cols=105 Identities=16% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHh------------------------------
Q 012184 356 IKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE------------------------------ 405 (469)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~------------------------------ 405 (469)
+.++.+.+...++.-..+.+.|...++.++....+...-++.++.-....
T Consensus 1 ~~~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy 80 (144)
T PRK14011 1 MNEELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDI 80 (144)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCe
Q ss_pred ------hhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc
Q 012184 406 ------RSRCFKLEAQIAELQKMLESSQ-TIENEVQILRQQKSAFEQEMERATSVQTQGSGG 460 (469)
Q Consensus 406 ------~~~~~~~~~~~~e~~~~l~~~~-~~e~e~~~~~q~~~~~~~~~~~~~~~q~q~~~~ 460 (469)
.+-...+++.+.++++....++ .+++-.++..+-...+++.+++..++..|..+|
T Consensus 81 ~VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~~~~~~~~~~~ 142 (144)
T PRK14011 81 YLEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQAIEQRQAQMKPK 142 (144)
T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
No 400
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=77.91 E-value=20 Score=27.99 Aligned_cols=81 Identities=16% Similarity=0.286 Sum_probs=0.0
Q ss_pred chhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhh---------------hhcchhhHHHHHHHHHHHHHHhhhHHHHH
Q 012184 348 DVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDE---------------VNSTHSELSKELSSVQGQLVAERSRCFKL 412 (469)
Q Consensus 348 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~~e~~~el~~~~~~l~~~~~~~~~~ 412 (469)
.+..++..+...+..++..+.+...-...+..--+. ..+.+..++..++.++..+.....+..++
T Consensus 10 ~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l 89 (105)
T cd00632 10 QLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDL 89 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhh
Q 012184 413 EAQIAELQKMLESSQT 428 (469)
Q Consensus 413 ~~~~~e~~~~l~~~~~ 428 (469)
+.++.+++.++..+++
T Consensus 90 ~~~~~elk~~l~~~~~ 105 (105)
T cd00632 90 QEKLKELQEKIQQAQK 105 (105)
T ss_pred HHHHHHHHHHHHHHhC
No 401
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=77.89 E-value=14 Score=31.17 Aligned_cols=84 Identities=24% Similarity=0.232 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184 367 LTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIA--ELQKMLESSQTIENEVQILRQQKSAFE 444 (469)
Q Consensus 367 ~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~--e~~~~l~~~~~~e~e~~~~~q~~~~~~ 444 (469)
....-......+.-...++......+.+++..+.+++.+.++.+.....+. +.+++.+..+++++++++.++..++.-
T Consensus 24 ~~~v~~~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l 103 (158)
T PF03938_consen 24 VDKVFQESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQAQQQL 103 (158)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHh
Q 012184 445 QEMERA 450 (469)
Q Consensus 445 ~~~~~~ 450 (469)
+..++.
T Consensus 104 ~~~~~~ 109 (158)
T PF03938_consen 104 QQEEQE 109 (158)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 402
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=77.87 E-value=13 Score=37.66 Aligned_cols=69 Identities=23% Similarity=0.391 Sum_probs=0.0
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHH----------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 012184 381 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEA----------QIAELQKMLESSQTIENEVQILRQQKSAFEQEMER 449 (469)
Q Consensus 381 ~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~----------~~~e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~~ 449 (469)
..++.+.++++++++++++.++.+++..+..++. ..+.+++-.+...++.++++++..++..+++++++
T Consensus 329 ~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 329 RPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 403
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=77.83 E-value=29 Score=26.56 Aligned_cols=88 Identities=15% Similarity=0.150 Sum_probs=0.0
Q ss_pred HhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 012184 363 LELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSA 442 (469)
Q Consensus 363 ~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~ 442 (469)
++..+.........+...+.........+++.+..+..+..+..++.+...+....+..+......+-....++..++++
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHh
Q 012184 443 FEQEMERA 450 (469)
Q Consensus 443 ~~~~~~~~ 450 (469)
.|.+..+.
T Consensus 81 ~E~~~~~~ 88 (96)
T PF08647_consen 81 TEKEFVRK 88 (96)
T ss_pred HHHHHHHH
No 404
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=77.75 E-value=28 Score=36.02 Aligned_cols=102 Identities=21% Similarity=0.303 Sum_probs=0.0
Q ss_pred hhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh---
Q 012184 351 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ--- 427 (469)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~--- 427 (469)
.++..++.....+...+...+.+...+++........+..++.++...+.+|...+....+......++...|+++.
T Consensus 302 ~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Ea 381 (522)
T PF05701_consen 302 EEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEA 381 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHH
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHhhh
Q 012184 428 -TIENEVQILRQQKSAFEQEMERATS 452 (469)
Q Consensus 428 -~~e~e~~~~~q~~~~~~~~~~~~~~ 452 (469)
...++.+..+.+......+.++...
T Consensus 382 e~Ak~ea~~~~~E~~~~k~E~e~~ka 407 (522)
T PF05701_consen 382 EEAKKEAEEAKEEVEKAKEEAEQTKA 407 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 405
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=77.74 E-value=25 Score=25.79 Aligned_cols=69 Identities=10% Similarity=0.226 Sum_probs=0.0
Q ss_pred hhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHH
Q 012184 374 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-TIENEVQILRQQKSA 442 (469)
Q Consensus 374 ~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~-~~e~e~~~~~q~~~~ 442 (469)
...++.+.+.........+....+.+.++...-...+.+++.+-+++..-..+. +.|.|+..+..++++
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 406
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=77.74 E-value=18 Score=34.79 Aligned_cols=69 Identities=19% Similarity=0.218 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 012184 388 HSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM--LESSQTIENEVQILRQQKSAFEQEMERATSVQTQ 456 (469)
Q Consensus 388 ~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~--l~~~~~~e~e~~~~~q~~~~~~~~~~~~~~~q~q 456 (469)
++|+++|+...+.||...++++.+.+++.+.--.. .+..++.+.++..++.++.++++++-+.-..+++
T Consensus 4 ~~elq~e~~~~E~qL~~a~qkl~da~~~~e~dpD~~nk~~~~~R~~~v~~~~~Ki~elkr~lAd~v~~~k~ 74 (428)
T PF00846_consen 4 LEELQEEITQHEQQLVIARQKLKDAEKQYEKDPDDVNKSTLQQRQSVVSALQDKIAELKRQLADRVAAGKQ 74 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
No 407
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=77.46 E-value=35 Score=28.36 Aligned_cols=78 Identities=12% Similarity=0.176 Sum_probs=0.0
Q ss_pred hhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh-----------------hHHHHHHHHHH
Q 012184 376 RFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-----------------TIENEVQILRQ 438 (469)
Q Consensus 376 ~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~-----------------~~e~e~~~~~q 438 (469)
.|..-++=.+........++...+..++..+.++..+.....+..+++.... .|...+.+.++
T Consensus 6 rL~~vL~l~~~~ee~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~~~~l~~~~~fl~~L~~~i~~q~~ 85 (146)
T PRK07720 6 RLQKVLELKENEKEKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLSIQEIRHYQQFVTNLERTIDHYQL 85 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhh
Q 012184 439 QKSAFEQEMERATSV 453 (469)
Q Consensus 439 ~~~~~~~~~~~~~~~ 453 (469)
.+...+.++++.++.
T Consensus 86 ~v~~~~~~ve~~r~~ 100 (146)
T PRK07720 86 LVMQAREQMNRKQQD 100 (146)
T ss_pred HHHHHHHHHHHHHHH
No 408
>PRK01156 chromosome segregation protein; Provisional
Probab=77.40 E-value=30 Score=38.60 Aligned_cols=107 Identities=8% Similarity=0.094 Sum_probs=0.0
Q ss_pred ccchhhhHHHHHHhHHHHhh---hhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184 346 EKDVRTDIDAIKEDKRVLEL---SLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM 422 (469)
Q Consensus 346 ~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~ 422 (469)
.+.+......++.....+.. .+.........++.++.+.+..+.++..++..++.++...+.....++.++..+...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~ei~~le~~~~~l~~~e~eL~~~~~~i~el~~~~~~l~~~i~~~~~el~~~~~~l~~l~~~ 240 (895)
T PRK01156 161 INSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSA 240 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 012184 423 LESSQTIENEVQILRQQKSAFEQEMERATS 452 (469)
Q Consensus 423 l~~~~~~e~e~~~~~q~~~~~~~~~~~~~~ 452 (469)
+...+.++.+...+..++..++..+....+
T Consensus 241 l~~l~~~~~~~~~~e~~i~ele~~l~el~~ 270 (895)
T PRK01156 241 LNELSSLEDMKNRYESEIKTAESDLSMELE 270 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 409
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=77.34 E-value=25 Score=35.67 Aligned_cols=113 Identities=16% Similarity=0.232 Sum_probs=0.0
Q ss_pred hhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhh-hhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Q 012184 350 RTDIDAIKEDKRVLELSLTEVRTENSRFREKIDE-VNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQT 428 (469)
Q Consensus 350 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~ 428 (469)
...+..+..+-......+.....+...+++.+++ ..+.+.....+.+.++.+.+.+..+...++.++..+-+...+..+
T Consensus 298 ~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~ 377 (458)
T COG3206 298 RQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRE 377 (458)
T ss_pred HHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcee
Q 012184 429 IENEVQILRQQKSAFEQEMERATSVQTQGSGGVW 462 (469)
Q Consensus 429 ~e~e~~~~~q~~~~~~~~~~~~~~~q~q~~~~~~ 462 (469)
|++|.+-.++-.++.-+..++....+-+..+.++
T Consensus 378 L~Re~~~~r~~ye~lL~r~qe~~~~~~~~~~n~r 411 (458)
T COG3206 378 LEREAEAARSLYETLLQRYQELSIQEASPIGNAR 411 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcee
No 410
>PRK11519 tyrosine kinase; Provisional
Probab=77.29 E-value=20 Score=38.75 Aligned_cols=110 Identities=10% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 012184 356 IKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQI 435 (469)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~ 435 (469)
+..+.+..-..+.+.+.+..+++.+.+++.....+..-.++.++.+...++.+..+++.++.++-+..++..+++++.+-
T Consensus 302 ~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~ 381 (719)
T PRK11519 302 LPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVES 381 (719)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCceeEeec
Q 012184 436 LRQQKSAFEQEMERATSVQTQGSGGVWRWIA 466 (469)
Q Consensus 436 ~~q~~~~~~~~~~~~~~~q~q~~~~~~~~~~ 466 (469)
.++.-..+.+.++ +.+.++....+-|+-|.
T Consensus 382 ~~~lY~~lL~r~~-e~~i~~a~~~~~~rIid 411 (719)
T PRK11519 382 GQQVYMQLLNKQQ-ELKITEASTVGDVRIVD 411 (719)
T ss_pred HHHHHHHHHHHHH-HHhHHhcCCCCCeEEEe
No 411
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=77.27 E-value=44 Score=28.29 Aligned_cols=101 Identities=15% Similarity=0.244 Sum_probs=0.0
Q ss_pred hHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh----
Q 012184 352 DIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ---- 427 (469)
Q Consensus 352 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~---- 427 (469)
++..++.....+............+.+.++.+.+.. .+.+.+.++.++.++++....|+.....+..+....+
T Consensus 51 e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~---~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~ 127 (158)
T PF09744_consen 51 ELELLREDNEQLETQYEREKELRKQAEEELLELEDQ---WRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREA 127 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 012184 428 TIENEVQILRQQKSAFEQEMERATSVQT 455 (469)
Q Consensus 428 ~~e~e~~~~~q~~~~~~~~~~~~~~~q~ 455 (469)
++..+...+++.--++-+.+.+.-++|+
T Consensus 128 ~l~~e~~~l~er~~e~l~~~~e~ver~k 155 (158)
T PF09744_consen 128 ELKKEYNRLHERERELLRKLKEHVERQK 155 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 412
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=77.18 E-value=31 Score=33.15 Aligned_cols=115 Identities=16% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHhh-
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE----RSRCFKLEAQIAELQKMLESSQ- 427 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~----~~~~~~~~~~~~e~~~~l~~~~- 427 (469)
.++|++-++.....-.....-..++++.+.-+.+.++|.+-.-+.+++||-.+ |..+.-|+++++-.+++...+-
T Consensus 266 leeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeervaYQsy 345 (455)
T KOG3850|consen 266 LEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEERVAYQSY 345 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC-ceeEeecC
Q 012184 428 ----TIENEVQILRQQKSAFEQEMERATSVQTQGSG-GVWRWIAG 467 (469)
Q Consensus 428 ----~~e~e~~~~~q~~~~~~~~~~~~~~~q~q~~~-~~~~~~~~ 467 (469)
..++-+|-.+-.+..+|-++++++-.|-..-. .+|+-+.|
T Consensus 346 ERaRdIqEalEscqtrisKlEl~qq~qqv~Q~e~~~na~a~~llg 390 (455)
T KOG3850|consen 346 ERARDIQEALESCQTRISKLELQQQQQQVVQLEGLENAVARRLLG 390 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHH
No 413
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=77.06 E-value=49 Score=31.88 Aligned_cols=108 Identities=12% Similarity=0.085 Sum_probs=0.0
Q ss_pred cchhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHH--------------HHHHHHHhhhHHHHH
Q 012184 347 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSS--------------VQGQLVAERSRCFKL 412 (469)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~--------------~~~~l~~~~~~~~~~ 412 (469)
+++....+++-..+..+-..+.+.....+..+++..+..+.+.+..+..+. .++++.+.....++.
T Consensus 16 k~~~~~~qk~l~~~~~l~~~~~k~~~~~e~~~~k~~~~~~~~~~~~~~~~~~~~~~la~~G~g~~~~~r~~~~~~i~~~~ 95 (332)
T TIGR01541 16 KKLNTADEKSLQSRSDEIIALIKLEKLLEEAERKALEALKKLAEATASIRAQNKRQLDRFGLGDKQRERLDARLQIDRTF 95 (332)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 012184 413 EAQIAELQKMLES---------SQTIENEVQILRQQKSAFEQEMERATSVQ 454 (469)
Q Consensus 413 ~~~~~e~~~~l~~---------~~~~e~e~~~~~q~~~~~~~~~~~~~~~q 454 (469)
++++.++.++.+. .++++.....+.++++.+++-.+++...|
T Consensus 96 ~~q~~~l~~~~~~~~~~s~~~y~~~~~~l~~~l~~~l~~~~~~y~~~d~~q 146 (332)
T TIGR01541 96 RKQQRDLNKAMTAKGLAGSDLYKEQLAAIKAALNEALAELHAYYAAEDALQ 146 (332)
T ss_pred HHHHHHHHHhhhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 414
>PRK01156 chromosome segregation protein; Provisional
Probab=77.03 E-value=31 Score=38.42 Aligned_cols=104 Identities=15% Similarity=0.133 Sum_probs=0.0
Q ss_pred hhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhH
Q 012184 350 RTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTI 429 (469)
Q Consensus 350 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~ 429 (469)
...+..--.....+...+.....+...+++++.+.+..+..+.+++..++.++...+..+..++..+..+.........+
T Consensus 175 ~~~~~~ei~~le~~~~~l~~~e~eL~~~~~~i~el~~~~~~l~~~i~~~~~el~~~~~~l~~l~~~l~~l~~~~~~~~~~ 254 (895)
T PRK01156 175 IDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRY 254 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 012184 430 ENEVQILRQQKSAFEQEMERATSV 453 (469)
Q Consensus 430 e~e~~~~~q~~~~~~~~~~~~~~~ 453 (469)
+.++.++...+..+++.+++....
T Consensus 255 e~~i~ele~~l~el~~~~~el~~~ 278 (895)
T PRK01156 255 ESEIKTAESDLSMELEKNNYYKEL 278 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 415
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.98 E-value=11 Score=37.45 Aligned_cols=103 Identities=14% Similarity=0.108 Sum_probs=0.0
Q ss_pred ccchhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 012184 346 EKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES 425 (469)
Q Consensus 346 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~ 425 (469)
+..+++.+..+.++..+++.........+++++++..++..++-.+-..++-++..--.++-.+++|..+++.+.+++..
T Consensus 350 ~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~ln~ 429 (508)
T KOG3091|consen 350 VKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLAQLNA 429 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHHHhcC
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 012184 426 SQTIENEVQILRQQKSAFEQEME 448 (469)
Q Consensus 426 ~~~~e~e~~~~~q~~~~~~~~~~ 448 (469)
=.++...+.++..+....+.++.
T Consensus 430 Pnq~k~Rl~~L~e~~r~q~~~~~ 452 (508)
T KOG3091|consen 430 PNQLKARLDELYEILRMQNSQLK 452 (508)
T ss_pred hHHHHHHHHHHHHHHHhhcchhc
No 416
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=76.98 E-value=40 Score=37.16 Aligned_cols=101 Identities=12% Similarity=0.145 Sum_probs=0.0
Q ss_pred hHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHH
Q 012184 352 DIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIEN 431 (469)
Q Consensus 352 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~ 431 (469)
+.....+...+++..+...+.++..++....-.....+.+.+++..++.+|+..-..+..++.++++.+.+|...+..-.
T Consensus 442 e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~ 521 (1041)
T KOG0243|consen 442 EKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIIS 521 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 012184 432 EVQILRQQKSAFEQEMERATS 452 (469)
Q Consensus 432 e~~~~~q~~~~~~~~~~~~~~ 452 (469)
+++.....+....-.+++.-+
T Consensus 522 ~~~~se~~l~~~a~~l~~~~~ 542 (1041)
T KOG0243|consen 522 QQEKSEEKLVDRATKLRRSLE 542 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 417
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=76.93 E-value=34 Score=26.89 Aligned_cols=85 Identities=16% Similarity=0.217 Sum_probs=0.0
Q ss_pred hhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHH----------------------HHHHHHHHHHHHhh
Q 012184 349 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELS----------------------KELSSVQGQLVAER 406 (469)
Q Consensus 349 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~----------------------~el~~~~~~l~~~~ 406 (469)
++-+++.+...-..++..+.........+..++.+.+..+.+++ .-+..+...+....
T Consensus 1 ~~~~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie 80 (110)
T TIGR02338 1 IPPQVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLE 80 (110)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 012184 407 SRCFKLEAQIAELQKMLESSQTIENEV 433 (469)
Q Consensus 407 ~~~~~~~~~~~e~~~~l~~~~~~e~e~ 433 (469)
.++..++.+...+++++..+++.-+++
T Consensus 81 ~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 81 LRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 418
>PRK04325 hypothetical protein; Provisional
Probab=76.93 E-value=13 Score=26.97 Aligned_cols=53 Identities=11% Similarity=0.189 Sum_probs=0.0
Q ss_pred hhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 012184 375 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 427 (469)
Q Consensus 375 ~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~ 427 (469)
..+...+.+++..+.=.+.-++++...+.+.+..+..++++++-+.+++...+
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 419
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=76.89 E-value=44 Score=30.67 Aligned_cols=91 Identities=16% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHhh-hH
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE--RSRCFKLEAQIAELQKMLESSQ-TI 429 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~--~~~~~~~~~~~~e~~~~l~~~~-~~ 429 (469)
...+.++...+...+........+......+++..+.+.+++.+++..+-... +.+..-+.+-.+|.++.++..+ .+
T Consensus 31 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~i 110 (246)
T TIGR03321 31 LDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEAL 110 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 012184 430 ENEVQILRQQKSAF 443 (469)
Q Consensus 430 e~e~~~~~q~~~~~ 443 (469)
+.|.+...+++...
T Consensus 111 e~E~~~a~~~l~~e 124 (246)
T TIGR03321 111 RREQAALSDELRRR 124 (246)
T ss_pred HHHHHHHHHHHHHH
No 420
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=76.83 E-value=30 Score=39.04 Aligned_cols=108 Identities=20% Similarity=0.140 Sum_probs=0.0
Q ss_pred hhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----
Q 012184 349 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE---- 424 (469)
Q Consensus 349 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~---- 424 (469)
+..|...++.+...++..+.......+-.+.+.+..+.+++.++++++.++.++-..+.+..+...+..+...+..
T Consensus 178 lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~ 257 (1109)
T PRK10929 178 LQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLP 257 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCC
Q ss_pred -HhhhHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 012184 425 -SSQTIENEVQILRQQKSAFEQEMERATSVQTQ 456 (469)
Q Consensus 425 -~~~~~e~e~~~~~q~~~~~~~~~~~~~~~q~q 456 (469)
..+++-+..+++-+++.+.-+..++..+.+++
T Consensus 258 ~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~ 290 (1109)
T PRK10929 258 KSIVAQFKINRELSQALNQQAQRMDLIASQQRQ 290 (1109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 421
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=76.83 E-value=54 Score=29.15 Aligned_cols=94 Identities=17% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHH
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE-LSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIEN 431 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~e-l~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~ 431 (469)
+.+|+.....-.........+..+...+++.....+...-.. +..++.++-+.......++.+++.+..=-....++++
T Consensus 6 l~yL~~~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~ 85 (206)
T PF14988_consen 6 LEYLKKKDEEKEKKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQER 85 (206)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 012184 432 EVQILRQQKSAFEQE 446 (469)
Q Consensus 432 e~~~~~q~~~~~~~~ 446 (469)
+++.++.++..+..+
T Consensus 86 eI~~Le~e~~~~~~e 100 (206)
T PF14988_consen 86 EIQTLEEELEKMRAE 100 (206)
T ss_pred HHHHHHHHHHHHHHH
No 422
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=76.82 E-value=35 Score=37.22 Aligned_cols=101 Identities=15% Similarity=0.216 Sum_probs=0.0
Q ss_pred cchhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 012184 347 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 426 (469)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~ 426 (469)
+.+..|.+++..+....+..+.....+...+.+.+.-.....++.++.+.+.+.-...+..+..++.+..+.+.+.+.+.
T Consensus 439 K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~ 518 (1195)
T KOG4643|consen 439 KKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQY 518 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 012184 427 QTIENEVQILRQQKSAFEQEM 447 (469)
Q Consensus 427 ~~~e~e~~~~~q~~~~~~~~~ 447 (469)
++.....+++-++++.+++.+
T Consensus 519 kt~~~qye~~~~k~eeLe~~l 539 (1195)
T KOG4643|consen 519 KTCDIQYELLSNKLEELEELL 539 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 423
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=76.78 E-value=0.79 Score=49.28 Aligned_cols=109 Identities=26% Similarity=0.461 Sum_probs=0.0
Q ss_pred chhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHH---HHHHHHHHHHHHhhh---HHHHHHHHHHHHHH
Q 012184 348 DVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELS---KELSSVQGQLVAERS---RCFKLEAQIAELQK 421 (469)
Q Consensus 348 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~---~el~~~~~~l~~~~~---~~~~~~~~~~e~~~ 421 (469)
.+...++.++++...++..+.+.+.+.+.++.++.+++.++.++. ++.+.++.++..+++ +..+++..++-.++
T Consensus 243 ~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKk 322 (713)
T PF05622_consen 243 DLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKK 322 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhh-------hHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 012184 422 MLESSQ-------TIENEVQILRQQKSAFEQEMERATSVQTQ 456 (469)
Q Consensus 422 ~l~~~~-------~~e~e~~~~~q~~~~~~~~~~~~~~~q~q 456 (469)
+|+.++ .|+.+...+.+++..+|+++.+......|
T Consensus 323 KLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~q 364 (713)
T PF05622_consen 323 KLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQ 364 (713)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
No 424
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=76.75 E-value=24 Score=25.11 Aligned_cols=65 Identities=15% Similarity=0.201 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012184 389 SELSKELSSVQGQLVAERSRCFKLEAQIAELQKM----LESSQTIENEVQILRQQKSAFEQEMERATSV 453 (469)
Q Consensus 389 ~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~----l~~~~~~e~e~~~~~q~~~~~~~~~~~~~~~ 453 (469)
..++.++..++..|..+..+....+.....+.++ +.++...-.+..++..+++.+.++++..+.+
T Consensus 1 ~~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~~ 69 (69)
T PF14197_consen 1 QKLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRAQ 69 (69)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 425
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=76.69 E-value=11 Score=39.05 Aligned_cols=96 Identities=13% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHH----HHHHHHHHHHhhhHHHHHHH
Q 012184 360 KRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQ----IAELQKMLESSQTIENEVQI 435 (469)
Q Consensus 360 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~----~~e~~~~l~~~~~~e~e~~~ 435 (469)
+..+...-.+.....+++++.+.+.+....+..+++. -++++++.++++.+++.. ..++.+..++.+++.++.+.
T Consensus 152 ~eil~~~~L~T~~~~~~~~~~~k~~~~~w~~~~~~Lp-~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~ 230 (555)
T TIGR03545 152 RALLKGEDLKTVETAEEIEKSLKAMQQKWKKRKKDLP-NKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKA 230 (555)
T ss_pred HHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhhccc
Q 012184 436 LRQQKSAFEQEMERATSVQTQ 456 (469)
Q Consensus 436 ~~q~~~~~~~~~~~~~~~q~q 456 (469)
..++..+..++++.+.+.-++
T Consensus 231 ~~~~i~~~~~~l~~~~~~~~~ 251 (555)
T TIGR03545 231 DKQKIKSAKNDLQNDKKQLKA 251 (555)
T ss_pred HHHHHHHHHHHHHHhHHHHHH
No 426
>PRK09343 prefoldin subunit beta; Provisional
Probab=76.69 E-value=37 Score=27.24 Aligned_cols=85 Identities=21% Similarity=0.231 Sum_probs=0.0
Q ss_pred hhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHH----------------------HHHHHHHHHHHHhh
Q 012184 349 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELS----------------------KELSSVQGQLVAER 406 (469)
Q Consensus 349 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~----------------------~el~~~~~~l~~~~ 406 (469)
++.+++..-..-..++..+.........+..++.+.+..+.|++ .-+..+...++-..
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie 84 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLE 84 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 012184 407 SRCFKLEAQIAELQKMLESSQTIENEV 433 (469)
Q Consensus 407 ~~~~~~~~~~~e~~~~l~~~~~~e~e~ 433 (469)
.++..++.+...+++++...++--+++
T Consensus 85 ~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 85 LRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 427
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=76.63 E-value=21 Score=33.85 Aligned_cols=90 Identities=21% Similarity=0.376 Sum_probs=0.0
Q ss_pred hHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHhhhH
Q 012184 359 DKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE---------RSRCFKLEAQIAELQKMLESSQTI 429 (469)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~---------~~~~~~~~~~~~e~~~~l~~~~~~ 429 (469)
+...+...+.+.+.+...|+.++.++...+.|++-++.-++.++... +....+-+..+.++++--.+.+++
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qL 145 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQL 145 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012184 430 ENEVQILRQQKSAFEQEME 448 (469)
Q Consensus 430 e~e~~~~~q~~~~~~~~~~ 448 (469)
|.+++-+.-+++.+..|.+
T Consensus 146 e~d~qs~lDEkeEl~~ERD 164 (319)
T PF09789_consen 146 ERDLQSLLDEKEELVTERD 164 (319)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 428
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=76.50 E-value=9.4 Score=42.90 Aligned_cols=105 Identities=12% Similarity=0.112 Sum_probs=0.0
Q ss_pred hhhHHHHHHhHHHH-----hhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--
Q 012184 350 RTDIDAIKEDKRVL-----ELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM-- 422 (469)
Q Consensus 350 ~~~~~~l~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~-- 422 (469)
..+++.++..-++- +...+...++...+++.-.+..+.-+..+++..+.+++.++.+++..+-+++.+|.+++
T Consensus 2087 ~~~qQ~~qQq~~~~~~~~~ql~~qq~q~~~~~r~q~~~~~r~~Q~rqQq~~~q~qQqqq~q~qq~~q~~q~~q~Qq~~~~ 2166 (2220)
T KOG3598|consen 2087 ETRQQIMQQQMREKLAAHHQLVEQQKQRDAREREQREREAREHQERQQQEAYQKQQQQQEQKQQIEQNNQIMQEQQREEA 2166 (2220)
T ss_pred chHHHHHHHhHHHHhhHHHHHHHhhhcccccccccchhhhhhHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHhhhcc
Q ss_pred ---HHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 012184 423 ---LESSQTIENEVQILRQQKSAFEQEMERATSVQ 454 (469)
Q Consensus 423 ---l~~~~~~e~e~~~~~q~~~~~~~~~~~~~~~q 454 (469)
.++.|.+.+..-+.+-+.++.-.++-++.+.|
T Consensus 2167 ~qa~qq~qplf~RQglqqtqqQqqtaalVRQlQ~q 2201 (2220)
T KOG3598|consen 2167 YQAEQQRQPLFRRQGLQQTQQQQQTAALVRQLQMQ 2201 (2220)
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
No 429
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=76.46 E-value=15 Score=29.31 Aligned_cols=65 Identities=18% Similarity=0.269 Sum_probs=0.0
Q ss_pred hhhHHHHHHhHHHH------hhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHH
Q 012184 350 RTDIDAIKEDKRVL------ELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEA 414 (469)
Q Consensus 350 ~~~~~~l~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~ 414 (469)
..|+-.++.+++.+ +.-.-+--.+..+|+.+-.++..++..+.+|...++.++...+.++..+..
T Consensus 46 reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 46 REEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 430
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.33 E-value=40 Score=34.10 Aligned_cols=110 Identities=20% Similarity=0.321 Sum_probs=0.0
Q ss_pred cchhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH---
Q 012184 347 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML--- 423 (469)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l--- 423 (469)
+.+..+...|++..-.++..+.+.......++.....+......+.++|..++-.|++.+++|.+++.++..-.+.+
T Consensus 334 e~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~dda 413 (654)
T KOG4809|consen 334 ESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDA 413 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q ss_pred -------HHhhhHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 012184 424 -------ESSQTIENEVQILRQQKSAFEQEMERATSVQTQ 456 (469)
Q Consensus 424 -------~~~~~~e~e~~~~~q~~~~~~~~~~~~~~~q~q 456 (469)
..++++|++......+......+.++.-+...|
T Consensus 414 r~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilke 453 (654)
T KOG4809|consen 414 RMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKE 453 (654)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 431
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=76.26 E-value=8.6 Score=25.85 Aligned_cols=40 Identities=18% Similarity=0.330 Sum_probs=0.0
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 012184 380 KIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAEL 419 (469)
Q Consensus 380 ~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~ 419 (469)
++.+++..+..++..+.-++.++++.++.++++++.++.+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 432
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=76.24 E-value=56 Score=34.30 Aligned_cols=103 Identities=15% Similarity=0.282 Sum_probs=0.0
Q ss_pred hhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHhh-h
Q 012184 351 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCF-KLEAQIAELQKMLESSQ-T 428 (469)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~-~~~~~~~e~~~~l~~~~-~ 428 (469)
.+...+.+....++..+.........+..++...+...++...+...++.++...++... .++..+.|++.++...- +
T Consensus 514 aE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~~ 593 (739)
T PF07111_consen 514 AERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEVESRLREQLSE 593 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHhhhh
Q 012184 429 IENEVQILRQQKS-------AFEQEMERATSV 453 (469)
Q Consensus 429 ~e~e~~~~~q~~~-------~~~~~~~~~~~~ 453 (469)
.|+.+.+.+++-. |+++...++.++
T Consensus 594 ~E~rLNeARREHtKaVVsLRQ~qrqa~reKer 625 (739)
T PF07111_consen 594 MEKRLNEARREHTKAVVSLRQIQRQAAREKER 625 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
No 433
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=76.23 E-value=56 Score=30.21 Aligned_cols=104 Identities=14% Similarity=0.224 Sum_probs=0.0
Q ss_pred ccccchhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184 344 LSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML 423 (469)
Q Consensus 344 ~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l 423 (469)
...++.+.-++++..-+.-+++.+........+|..++...-+.+...++. +..||..+-++...+..++.|++.+-
T Consensus 220 ~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~---lNnqL~~l~q~fr~a~~~lse~~e~y 296 (384)
T KOG0972|consen 220 QDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKS---LNNQLASLMQKFRRATDTLSELREKY 296 (384)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhh----hHHHHHHHHHHHHHHHHHHHHHh
Q 012184 424 ESSQ----TIENEVQILRQQKSAFEQEMERA 450 (469)
Q Consensus 424 ~~~~----~~e~e~~~~~q~~~~~~~~~~~~ 450 (469)
++.+ ++.+.+.+.-.+++++.++.++.
T Consensus 297 ~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~ 327 (384)
T KOG0972|consen 297 KQASVGVSSRTETLDEVMDEIEQLKQEMEEQ 327 (384)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
No 434
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=76.20 E-value=33 Score=30.92 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=0.0
Q ss_pred hhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHhhh
Q 012184 374 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-TIENEVQILRQQKSAFEQEMERATS 452 (469)
Q Consensus 374 ~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~-~~e~e~~~~~q~~~~~~~~~~~~~~ 452 (469)
...|...+..++..+.+++++++.+..+-...|......-..++..=+.+-... +++....++++++.++.++..++++
T Consensus 138 n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 138 NEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred hccc
Q 012184 453 VQTQ 456 (469)
Q Consensus 453 ~q~q 456 (469)
.+.|
T Consensus 218 ~~~~ 221 (221)
T PF05700_consen 218 NQQQ 221 (221)
T ss_pred cccC
No 435
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=76.18 E-value=24 Score=32.39 Aligned_cols=86 Identities=22% Similarity=0.304 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHH---------------------------------------------
Q 012184 367 LTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQ--------------------------------------------- 401 (469)
Q Consensus 367 ~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~--------------------------------------------- 401 (469)
+.+.+.+...+..++++.++.++++|.+|..++..
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~si 80 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSI 80 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccH
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 012184 402 LVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQT 455 (469)
Q Consensus 402 l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~~~~~~q~ 455 (469)
|.....+-+...+...||++++.+.++ +++.++++++.+.....++=++-|
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~---~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQ---TISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
No 436
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=76.13 E-value=19 Score=28.38 Aligned_cols=68 Identities=16% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Q 012184 361 RVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQT 428 (469)
Q Consensus 361 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~ 428 (469)
+.....+...+.+.+...+.++..+..++++...+++.+..+.+.+.+.++++.+-++.++++....+
T Consensus 21 ~~qs~~i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik~~lk 88 (110)
T PF10828_consen 21 WYQSQRIDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIKTALK 88 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 437
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=76.11 E-value=22 Score=30.26 Aligned_cols=69 Identities=28% Similarity=0.365 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 012184 390 ELSKELSSVQGQLVAE-RSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQGS 458 (469)
Q Consensus 390 e~~~el~~~~~~l~~~-~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~~~~~~q~q~~ 458 (469)
.+.+||......|... .+-..+++.++.++.++++.++..+.+...++-+-..++.+|+.....=.+++
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~~yL~~~ 171 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQEQYLQKS 171 (171)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
No 438
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=76.10 E-value=32 Score=31.60 Aligned_cols=87 Identities=14% Similarity=0.204 Sum_probs=0.0
Q ss_pred hhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH------------------HHHHHHHHhh-hHH
Q 012184 370 VRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIA------------------ELQKMLESSQ-TIE 430 (469)
Q Consensus 370 ~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~------------------e~~~~l~~~~-~~e 430 (469)
.+....+++.--.++++-.+..+..+..+++|+.++..++.+.+.++. +|.+++++.- .++
T Consensus 58 e~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qq 137 (258)
T PF15397_consen 58 EYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQ 137 (258)
T ss_pred HccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccc
Q 012184 431 NEVQILRQQKSAFEQEMERATSVQTQ 456 (469)
Q Consensus 431 ~e~~~~~q~~~~~~~~~~~~~~~q~q 456 (469)
.|+.++....+.+...+....+..++
T Consensus 138 dEldel~e~~~~el~~l~~~~q~k~~ 163 (258)
T PF15397_consen 138 DELDELNEMRQMELASLSRKIQEKKE 163 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 439
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=76.04 E-value=14 Score=26.24 Aligned_cols=48 Identities=15% Similarity=0.204 Sum_probs=0.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHhh
Q 012184 404 AERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERAT 451 (469)
Q Consensus 404 ~~~~~~~~~~~~~~e~~~~l~~~~----~~e~e~~~~~q~~~~~~~~~~~~~ 451 (469)
...+++.+||..++-.+.-++.+. ++++++..+++++..+.+.+....
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 440
>PRK11546 zraP zinc resistance protein; Provisional
Probab=75.90 E-value=34 Score=28.30 Aligned_cols=63 Identities=13% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 012184 392 SKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-----------TIENEVQILRQQKSAFEQEMERATSVQ 454 (469)
Q Consensus 392 ~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~-----------~~e~e~~~~~q~~~~~~~~~~~~~~~q 454 (469)
.++.+.++.-.++...+...|.+++..++.+|+.+. ++.+|++.|++++.+..-+.+-+-+++
T Consensus 46 ~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k~ 119 (143)
T PRK11546 46 TEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIAMAEA 119 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 441
>PRK02793 phi X174 lysis protein; Provisional
Probab=75.84 E-value=14 Score=26.52 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=0.0
Q ss_pred hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 012184 373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 427 (469)
Q Consensus 373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~ 427 (469)
....+...+.+++..+.=.+.-+.++...+.+.+..+..+++++..+.+++...+
T Consensus 2 ~~~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 2 QDSSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 442
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=75.84 E-value=0.87 Score=45.72 Aligned_cols=111 Identities=17% Similarity=0.175 Sum_probs=0.0
Q ss_pred ccchhhhHHHHHHhHHHHhhhhhhhhh----hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHH
Q 012184 346 EKDVRTDIDAIKEDKRVLELSLTEVRT----ENSRFREKIDEVNSTHSELSKELSSVQGQLVAE-RSRCFKLEAQIAELQ 420 (469)
Q Consensus 346 ~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~-~~~~~~~~~~~~e~~ 420 (469)
++.|..||..||++.+.....+.+... +.+++.+.+.+.+..+++-|+.|++.+.+.... +..+..|-...+||+
T Consensus 371 ~e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeELr 450 (495)
T PF12004_consen 371 VEKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEELR 450 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhhh
Q ss_pred HHHHHhh----hHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 012184 421 KMLESSQ----TIENEVQILRQQKSAFEQEMERATSVQTQ 456 (469)
Q Consensus 421 ~~l~~~~----~~e~e~~~~~q~~~~~~~~~~~~~~~q~q 456 (469)
++-..++ ..++=+++..+++..++....++-....|
T Consensus 451 re~~~m~~~~~~kqrii~aQ~~~i~~Ldaan~Rl~sal~~ 490 (495)
T PF12004_consen 451 REHAEMQAVLDHKQRIIDAQEKRIAALDAANSRLMSALTQ 490 (495)
T ss_dssp ----------------------------------------
T ss_pred hhHHHHhcccccchHHHHHhhhhccccccccccccccccc
No 443
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=75.83 E-value=14 Score=32.47 Aligned_cols=70 Identities=21% Similarity=0.317 Sum_probs=0.0
Q ss_pred hhHhhhhhhhcchhhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 012184 376 RFREKIDEVNSTHSELSKELSSVQGQLVA-ERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEME 448 (469)
Q Consensus 376 ~l~~~~~~~~~~~~e~~~el~~~~~~l~~-~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~ 448 (469)
.+-.++...++..+...++.+......++ .++...+.+.+++++++++.. .+++.+.+.+|.+.++.|.+
T Consensus 122 ~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~---~~~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 122 SLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEK---KEKEIEALKKQSEGLQKEYD 192 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcC
No 444
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=75.81 E-value=45 Score=33.76 Aligned_cols=100 Identities=9% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENE 432 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e 432 (469)
+...+.+.-+.+..+........+..+...+..+++++..+..++.+.+-+..+.+-++..++..+.+++++..+++-.+
T Consensus 177 ~~~~~~r~~e~Q~qv~qsl~~el~~i~~~~q~~eqi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~~~~~~eqekiR~~ 256 (591)
T KOG2412|consen 177 RKEVKRRLLEEQNQVLQSLDTELQAIQREKQRKEQIRERKERSEEKREEAERKRRAHQEELRQKEDEEAELQEQEKIRAE 256 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 012184 433 VQILRQQKSAFEQEMERATS 452 (469)
Q Consensus 433 ~~~~~q~~~~~~~~~~~~~~ 452 (469)
-++..++..+.+++.+++.+
T Consensus 257 eekqeee~ke~e~~~~k~~q 276 (591)
T KOG2412|consen 257 EEKQEEERKEAEEQAEKEVQ 276 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhc
No 445
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=75.70 E-value=1.5e+02 Score=33.74 Aligned_cols=252 Identities=10% Similarity=0.000 Sum_probs=0.0
Q ss_pred CceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEE
Q 012184 15 GVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCG 92 (469)
Q Consensus 15 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~ 92 (469)
+.+.++|+....=..+...+..+....+-.. ..-...+.+++. ++.||+.-..+.. +.++|+.++.=+
T Consensus 590 ~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~----a~f~~P~GIavd~~gn~LYVaDt~n~~------Ir~id~~~~~V~ 659 (1057)
T PLN02919 590 NRIVVTDLDGNFIVQIGSTGEEGLRDGSFED----ATFNRPQGLAYNAKKNLLYVADTENHA------LREIDFVNETVR 659 (1057)
T ss_pred CeEEEEeCCCCEEEEEccCCCcCCCCCchhc----cccCCCcEEEEeCCCCEEEEEeCCCce------EEEEecCCCEEE
Q ss_pred EeecCCCC--------------CCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCC------
Q 012184 93 VMETSGKV--------------PVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP------ 152 (469)
Q Consensus 93 ~~~~~g~~--------------p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p------ 152 (469)
.+...|.. -..-.+.+....++.||+... ..+.|++||+.++....+...|...
T Consensus 660 tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~------~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~ 733 (1057)
T PLN02919 660 TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA------GQHQIWEYNISDGVTRVFSGDGYERNLNGSS 733 (1057)
T ss_pred EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC------CCCeEEEEECCCCeEEEEecCCccccCCCCc
Q ss_pred ----CCCCCceEEEEcCcE-EEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCc------------------ce
Q 012184 153 ----APRYDHSAALHANRY-LIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRA------------------GH 209 (469)
Q Consensus 153 ----~~r~~~~~~~~~~~~-l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~------------------~~ 209 (469)
.-..-+.+++..++. |||....+ +.|.+||+.++....+........... ..
T Consensus 734 ~~~~~~~~P~GIavspdG~~LYVADs~n-----~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 734 GTSTSFAQPSGISLSPDLKELYIADSES-----SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred cccccccCccEEEEeCCCCEEEEEECCC-----CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Q ss_pred EEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCC-----CCCCCCCcceEEEEEcCCcEEEEEeccCCCCC
Q 012184 210 AGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGR-----NPLASEGLSVCSAIIEGEHHLVAFGGYNGKYN 284 (469)
Q Consensus 210 ~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~-----~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~ 284 (469)
.++.-++.+||.-.. .+.+.+||+.+.....+...... ....-....-..+.+++++.+||.-..++.
T Consensus 809 vavd~dG~LYVADs~-----N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~-- 881 (1057)
T PLN02919 809 VLCAKDGQIYVADSY-----NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL-- 881 (1057)
T ss_pred eeEeCCCcEEEEECC-----CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE--
Q ss_pred ceEEEEECCCCC
Q 012184 285 NEVFVMRLKPRD 296 (469)
Q Consensus 285 ~~~~~~d~~~~~ 296 (469)
+.++|+.+..
T Consensus 882 --Irvid~~~~~ 891 (1057)
T PLN02919 882 --IRYLDLNKGE 891 (1057)
T ss_pred --EEEEECCCCc
No 446
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=75.67 E-value=14 Score=31.27 Aligned_cols=69 Identities=19% Similarity=0.260 Sum_probs=0.0
Q ss_pred hhhhhhHhhhhhhhcchhhHHHHHHHHHHH-----HHHhhhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHH
Q 012184 372 TENSRFREKIDEVNSTHSELSKELSSVQGQ-----LVAERSRCFKLEAQIAELQKMLESSQ-TIENEVQILRQQK 440 (469)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~e~~~el~~~~~~-----l~~~~~~~~~~~~~~~e~~~~l~~~~-~~e~e~~~~~q~~ 440 (469)
.|.+.+++-++...+...+++.-+-..|.- ..++++..++|+..-+.+++++++.+ +|+..+.++.+++
T Consensus 105 ~Elq~mr~~ln~FR~qm~dlE~~l~~QQalvy~hMSeeER~EaeQLQsLR~avRqElqELE~QL~DRl~~l~e~~ 179 (179)
T PF14723_consen 105 QELQQMRRSLNSFREQMMDLELHLMRQQALVYRHMSEEEREEAEQLQSLRSAVRQELQELEFQLEDRLLQLREQI 179 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
No 447
>PRK00846 hypothetical protein; Provisional
Probab=75.65 E-value=15 Score=26.70 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=0.0
Q ss_pred hhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 012184 375 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 427 (469)
Q Consensus 375 ~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~ 427 (469)
..+...+.+++..+.=.+.-++++.+.+.+.+..+..+++++.-+..+++.++
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 448
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=75.63 E-value=15 Score=34.02 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=0.0
Q ss_pred hhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 012184 369 EVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILR 437 (469)
Q Consensus 369 ~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~ 437 (469)
..+....+.++...++-+-.+..+.+.+.+..+++.+..+-++|+.++.+++++++.+.++-.|....+
T Consensus 224 ~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~~r 292 (294)
T KOG4571|consen 224 PEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYKKR 292 (294)
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 449
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=75.51 E-value=44 Score=27.46 Aligned_cols=95 Identities=16% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHhh-hH
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE--RSRCFKLEAQIAELQKMLESSQ-TI 429 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~--~~~~~~~~~~~~e~~~~l~~~~-~~ 429 (469)
...+.++...+...+........+....+.+++..+.+.+.+..+...+.... +.+...+..-.+|..+.+...+ ++
T Consensus 31 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i 110 (140)
T PRK07353 31 GKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKEKARREI 110 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012184 430 ENEVQILRQQKSAFEQEM 447 (469)
Q Consensus 430 e~e~~~~~q~~~~~~~~~ 447 (469)
++|.+....++...--.+
T Consensus 111 ~~e~~~a~~~l~~~v~~l 128 (140)
T PRK07353 111 EQQKQAALAQLEQQVDAL 128 (140)
T ss_pred HHHHHHHHHHHHHHHHHH
No 450
>PRK02119 hypothetical protein; Provisional
Probab=75.46 E-value=15 Score=26.44 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=0.0
Q ss_pred hhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 012184 379 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQ 434 (469)
Q Consensus 379 ~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~ 434 (469)
.++...+.++.+++..+.-.+.-+..+-+-+.+.++++..++++++.+.+.-++++
T Consensus 2 ~~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 2 QIQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 451
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=75.45 E-value=42 Score=36.27 Aligned_cols=99 Identities=18% Similarity=0.295 Sum_probs=0.0
Q ss_pred hhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh---
Q 012184 351 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ--- 427 (469)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~--- 427 (469)
.++..++.+...+.....+.+..+..++..+...+....-+..++..++..+......+.+.+.+++.++++....+
T Consensus 301 ~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei 380 (775)
T PF10174_consen 301 SELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEI 380 (775)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --------hHHHHHHHHHHHHHHHHHHHHH
Q 012184 428 --------TIENEVQILRQQKSAFEQEMER 449 (469)
Q Consensus 428 --------~~e~e~~~~~q~~~~~~~~~~~ 449 (469)
..+.++..++..++.++..+.+
T Consensus 381 ~~l~d~~d~~e~ki~~Lq~kie~Lee~l~e 410 (775)
T PF10174_consen 381 EDLRDMLDKKERKINVLQKKIENLEEQLRE 410 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 452
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=75.19 E-value=47 Score=27.67 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=0.0
Q ss_pred ccchhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhh-------------hhcchhhHHHHHHHHHHHHHHhhhHHHHH
Q 012184 346 EKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDE-------------VNSTHSELSKELSSVQGQLVAERSRCFKL 412 (469)
Q Consensus 346 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~e~~~el~~~~~~l~~~~~~~~~~ 412 (469)
.++...++..+.......+..+.........+.+.+.. .+..+..++..+.+.+..+.....++++.
T Consensus 18 ~e~a~~el~k~~~~~~~~~~qL~~l~~y~~ey~q~~~~k~~~G~s~~q~~nyq~fI~~Le~~I~q~~~~~~~~~~~ve~~ 97 (148)
T COG2882 18 EEEAAIELSKIRSEKENAEEQLKMLSGYRNEYEQNLNEKLKSGVSAAQWQNYQQFISQLEVAIDQQQSQLSKLRKQVEQK 97 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHHHhhhhcc
Q 012184 413 EAQIAELQKMLESSQTIE--NEVQILRQQKSAFEQEMERATSVQT 455 (469)
Q Consensus 413 ~~~~~e~~~~l~~~~~~e--~e~~~~~q~~~~~~~~~~~~~~~q~ 455 (469)
.+...|.+.+++..+.|. +..+-+++++-......++.-++..
T Consensus 98 r~~w~ek~~~~k~~e~L~er~~~e~~~~e~~~Eqk~mDE~a~~~f 142 (148)
T COG2882 98 REIWQEKQIELKALEKLKERQKTEFLLEENRREQKIMDELAQRAF 142 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHH
No 453
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=75.17 E-value=34 Score=35.26 Aligned_cols=105 Identities=17% Similarity=0.240 Sum_probs=0.0
Q ss_pred hhhhHHHHHHhHHHHhhhhhhhhhhhhhhH----hhhhhhhcchhhHHH---H-----------HHHHHHHHHHhhhHHH
Q 012184 349 VRTDIDAIKEDKRVLELSLTEVRTENSRFR----EKIDEVNSTHSELSK---E-----------LSSVQGQLVAERSRCF 410 (469)
Q Consensus 349 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~e~~~---e-----------l~~~~~~l~~~~~~~~ 410 (469)
+..+...++...+.+.......+.+..+.+ ..++..+..+..++. . +.+++.+....++.++
T Consensus 212 ~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~ 291 (511)
T PF09787_consen 212 YLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQ 291 (511)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012184 411 KLEAQIAELQKMLESSQ-TIENEVQILRQQKSAFEQEMERATSV 453 (469)
Q Consensus 411 ~~~~~~~e~~~~l~~~~-~~e~e~~~~~q~~~~~~~~~~~~~~~ 453 (469)
.++.++.++..+++..+ ++..+.+..++..+..+.........
T Consensus 292 ~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (511)
T PF09787_consen 292 LLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTT 335 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhch
No 454
>PRK02793 phi X174 lysis protein; Provisional
Probab=75.00 E-value=28 Score=25.01 Aligned_cols=55 Identities=13% Similarity=0.255 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184 387 THSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFE 444 (469)
Q Consensus 387 ~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~~ 444 (469)
...+++..+.+++.++.-...-+++|...+.+.++++ ..+++++..+.+++...+
T Consensus 2 ~~~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I---~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 2 QDSSLEARLAELESRLAFQEITIEELNVTVTAHEMEM---AKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhc
No 455
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=74.95 E-value=20 Score=29.23 Aligned_cols=65 Identities=20% Similarity=0.153 Sum_probs=0.0
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHH
Q 012184 381 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLE-AQIAELQKM-LESSQTIENEVQILRQQKSAFEQ 445 (469)
Q Consensus 381 ~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~-~~~~e~~~~-l~~~~~~e~e~~~~~q~~~~~~~ 445 (469)
.++++..+..++.++++++-+.++.-....... .+++.++++ .+..+++.....++.+++++++.
T Consensus 22 ~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~~ 88 (131)
T PF11068_consen 22 LQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQK 88 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 456
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=74.95 E-value=29 Score=32.99 Aligned_cols=192 Identities=16% Similarity=0.211 Sum_probs=0.0
Q ss_pred cCeeeEEE----CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCcc
Q 012184 54 SDHCMVKW----GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLL 129 (469)
Q Consensus 54 ~~~~~~~~----~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~ 129 (469)
+||+..+. ++++.+.|..+.. +-++|..|+ .|.....+|+-+++. +-+--|+--...--
T Consensus 234 ~GHtGSVLCLqyd~rviisGSSDsT------vrvWDv~tg---------e~l~tlihHceaVLh--lrf~ng~mvtcSkD 296 (499)
T KOG0281|consen 234 TGHTGSVLCLQYDERVIVSGSSDST------VRVWDVNTG---------EPLNTLIHHCEAVLH--LRFSNGYMVTCSKD 296 (499)
T ss_pred hcCCCcEEeeeccceEEEecCCCce------EEEEeccCC---------chhhHHhhhcceeEE--EEEeCCEEEEecCC
Q ss_pred CcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcce
Q 012184 130 NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH 209 (469)
Q Consensus 130 ~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~ 209 (469)
.++-++|..+-+ .++...-+---|+.-..+-+++.+|+-..|. ..+-+++++|..... .+...+.+-
T Consensus 297 rsiaVWdm~sps--~it~rrVLvGHrAaVNvVdfd~kyIVsASgD------RTikvW~~st~efvR-----tl~gHkRGI 363 (499)
T KOG0281|consen 297 RSIAVWDMASPT--DITLRRVLVGHRAAVNVVDFDDKYIVSASGD------RTIKVWSTSTCEFVR-----TLNGHKRGI 363 (499)
T ss_pred ceeEEEeccCch--HHHHHHHHhhhhhheeeeccccceEEEecCC------ceEEEEeccceeeeh-----hhhcccccc
Q ss_pred EEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEE
Q 012184 210 AGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFV 289 (469)
Q Consensus 210 ~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~ 289 (469)
++..++++++|.|.. -+.+-++|+..+. .+-.+.+.. .-....-+ +++=+|.||++|+ +-+
T Consensus 364 AClQYr~rlvVSGSS-----DntIRlwdi~~G~--cLRvLeGHE----eLvRciRF----d~krIVSGaYDGk----ikv 424 (499)
T KOG0281|consen 364 ACLQYRDRLVVSGSS-----DNTIRLWDIECGA--CLRVLEGHE----ELVRCIRF----DNKRIVSGAYDGK----IKV 424 (499)
T ss_pred eehhccCeEEEecCC-----CceEEEEeccccH--HHHHHhchH----Hhhhheee----cCceeeeccccce----EEE
Q ss_pred EECCC
Q 012184 290 MRLKP 294 (469)
Q Consensus 290 ~d~~~ 294 (469)
+|+..
T Consensus 425 Wdl~a 429 (499)
T KOG0281|consen 425 WDLQA 429 (499)
T ss_pred Eeccc
No 457
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=74.95 E-value=26 Score=28.69 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeEeec
Q 012184 387 THSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSGGVWRWIA 466 (469)
Q Consensus 387 ~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~~~~~~q~q~~~~~~~~~~ 466 (469)
++..+..+++..+..+...+..+..+..++.-+....+..++.+.++.....+..+.....++.-+..+.+-+-..+| +
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~W-a 98 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRW-A 98 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH-h
Q ss_pred CCC
Q 012184 467 GGQ 469 (469)
Q Consensus 467 ~~~ 469 (469)
++.
T Consensus 99 ~t~ 101 (135)
T TIGR03495 99 DTP 101 (135)
T ss_pred cCC
No 458
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=74.91 E-value=21 Score=37.38 Aligned_cols=107 Identities=11% Similarity=0.124 Sum_probs=0.0
Q ss_pred cchhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 012184 347 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 426 (469)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~ 426 (469)
..+...++.+..+..++...+........-=...+++.+.++..+.+-.+.....+........+++.+++++.......
T Consensus 269 ~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~l 348 (563)
T TIGR00634 269 RELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESL 348 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012184 427 QTIENEVQILRQQKSAFEQEMERATSV 453 (469)
Q Consensus 427 ~~~e~e~~~~~q~~~~~~~~~~~~~~~ 453 (469)
++++++++++++++....+++.+.+..
T Consensus 349 e~L~~el~~l~~~l~~~a~~Ls~~R~~ 375 (563)
T TIGR00634 349 EALEEEVDKLEEELDKAAVALSLIRRK 375 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 459
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=74.81 E-value=57 Score=28.45 Aligned_cols=100 Identities=12% Similarity=0.102 Sum_probs=0.0
Q ss_pred cchhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 012184 347 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 426 (469)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~ 426 (469)
+.+..++...-..++.-..........+.+|----++.=+.+-++..+.+..++..+.++..+++-.+.+|+|++.|...
T Consensus 21 E~i~kelie~l~~~~~qk~l~~gE~v~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~a 100 (272)
T KOG4552|consen 21 EHIVKELIETLINRDKQKMLKNGETVNILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSA 100 (272)
T ss_pred HHHHHHHHHHHHhhhHHHHHhcchHHHHHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q ss_pred h-hHHHHHHHHHHHHHHHHHH
Q 012184 427 Q-TIENEVQILRQQKSAFEQE 446 (469)
Q Consensus 427 ~-~~e~e~~~~~q~~~~~~~~ 446 (469)
+ -|-.-.-+..|++.++++.
T Consensus 101 E~iLtta~fqA~qKLksi~~A 121 (272)
T KOG4552|consen 101 EVILTTACFQANQKLKSIKEA 121 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 460
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.73 E-value=14 Score=33.21 Aligned_cols=64 Identities=17% Similarity=0.208 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHH--hhhHHHH-HHHHHHHHHHHHHHHHHhh
Q 012184 388 HSELSKELSSVQGQLVAERSRCFKLEAQIAELQK-MLES--SQTIENE-VQILRQQKSAFEQEMERAT 451 (469)
Q Consensus 388 ~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~-~l~~--~~~~e~e-~~~~~q~~~~~~~~~~~~~ 451 (469)
++.+++|+..++.-|.+.-+.+.+-..++.+|.. ++-+ ++++.+| +++|+.+++.+-.++.+++
T Consensus 227 i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~ 294 (305)
T KOG3990|consen 227 IQKLKEEIARLKKLLHQKDQLILEKDKQISNLKADKEYQKELEKKHKERVQQLQKKKEESLKAIAQLR 294 (305)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 461
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=74.67 E-value=9 Score=28.45 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012184 394 ELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSV 453 (469)
Q Consensus 394 el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~~~~~~ 453 (469)
+.+++....-.++.|++.....+.++.-=....++.+++++.++++++...+-+.+..++
T Consensus 22 ~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~ 81 (83)
T PF07544_consen 22 SSKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKER 81 (83)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 462
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=74.62 E-value=19 Score=32.87 Aligned_cols=72 Identities=21% Similarity=0.248 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHH--------HHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q 012184 390 ELSKELSSVQGQLVAE--RSRCFKLEAQIAELQKM--------LESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSG 459 (469)
Q Consensus 390 e~~~el~~~~~~l~~~--~~~~~~~~~~~~e~~~~--------l~~~~~~e~e~~~~~q~~~~~~~~~~~~~~~q~q~~~ 459 (469)
|.++-|+.+-.+|.+. ..|--+-+..+++.-++ -|.+--+|.-|++++++++++|+++++.+..+.+.+|
T Consensus 4 eE~qLI~~lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q~~~~~~~~~g 83 (247)
T PF09849_consen 4 EERQLIDDLFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQAQAPQAQSSG 83 (247)
T ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q ss_pred ce
Q 012184 460 GV 461 (469)
Q Consensus 460 ~~ 461 (469)
|+
T Consensus 84 gF 85 (247)
T PF09849_consen 84 GF 85 (247)
T ss_pred cc
No 463
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=74.57 E-value=76 Score=29.78 Aligned_cols=205 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred CCCCCCCcCeeeEEECCEEEEEccccCCCC----------------CcceEEEEECCCCeEEEeecCCCCCCCCcceEEE
Q 012184 47 LEVLPPMSDHCMVKWGTKLLILGGHYKKSS----------------DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVT 110 (469)
Q Consensus 47 ~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~----------------~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~ 110 (469)
++|.++=--|.++.+-+...+|||+-.... ..+-++.||..+++-+.+-.. ..-.++.-++=+
T Consensus 30 ~~P~SGGDTYNAV~~vDd~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWke-sih~~~~WaGEV 108 (339)
T PF09910_consen 30 PPPTSGGDTYNAVEWVDDFIYFGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKE-SIHDKTKWAGEV 108 (339)
T ss_pred CCCCCCCccceeeeeecceEEEeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEec-ccCCccccccch
Q ss_pred E------ECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEE
Q 012184 111 L------VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLH 184 (469)
Q Consensus 111 ~------~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~ 184 (469)
. +++.||+.-+-+- ..--+|..|.+++.-+.+. .-|.++ .+.+.|..++-+ ..-..-.+.++
T Consensus 109 SdIlYdP~~D~LLlAR~DGh---~nLGvy~ldr~~g~~~~L~---~~ps~K----G~~~~D~a~F~i--~~~~~g~~~i~ 176 (339)
T PF09910_consen 109 SDILYDPYEDRLLLARADGH---ANLGVYSLDRRTGKAEKLS---SNPSLK----GTLVHDYACFGI--NNFHKGVSGIH 176 (339)
T ss_pred hheeeCCCcCEEEEEecCCc---ceeeeEEEcccCCceeecc---CCCCcC----ceEeeeeEEEec--cccccCCceEE
Q ss_pred EEECCCCce--Eeeeec-----CCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEEC---CCCcEEEeccCCCCCC
Q 012184 185 VLDLQTNEW--SQPEIK-----GDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNM---TKLAWSILTSVKGRNP 254 (469)
Q Consensus 185 ~~d~~~~~W--~~~~~~-----~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~---~~~~W~~~~~~~~~~p 254 (469)
+||+.+++| +..... +....++.+..+...+..+..++| -+.+.|+ .......+-..+...-
T Consensus 177 ~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~rG--------Gi~vgnP~~~e~~~f~RlfDf~~~~y 248 (339)
T PF09910_consen 177 CLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVRG--------GIFVGNPYNGEEFRFYRLFDFPYTFY 248 (339)
T ss_pred EEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEEec--------cEEEeCCCCCCceeEEEeeeccCCcc
Q ss_pred CCCCCcceEEEEEcCCcEEEEE
Q 012184 255 LASEGLSVCSAIIEGEHHLVAF 276 (469)
Q Consensus 255 ~~r~~~s~~~~~~~~~~~l~v~ 276 (469)
.|....++... ++.|+.|
T Consensus 249 ap~R~nal~~g----GGil~~f 266 (339)
T PF09910_consen 249 APFRVNALPIG----GGILIAF 266 (339)
T ss_pred CcceecceEeC----CeEEEEe
No 464
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=74.54 E-value=49 Score=35.34 Aligned_cols=105 Identities=15% Similarity=0.253 Sum_probs=0.0
Q ss_pred chhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHH---HHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 012184 348 DVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE---LSSVQGQLVAERSRCFKLEAQIAELQKMLE 424 (469)
Q Consensus 348 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~e---l~~~~~~l~~~~~~~~~~~~~~~e~~~~l~ 424 (469)
.+..+.+.+..++..+...+.+.+....++-+...++++++-.++++ |.+-|-+...++..+..++.+.+-+..+++
T Consensus 66 ~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qle 145 (717)
T PF09730_consen 66 ELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLE 145 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhh----hHHHHHHHHHHHHHHHHHHHHHhhh
Q 012184 425 SSQ----TIENEVQILRQQKSAFEQEMERATS 452 (469)
Q Consensus 425 ~~~----~~e~e~~~~~q~~~~~~~~~~~~~~ 452 (469)
..- -.|+++++..+-++...++.-.++.
T Consensus 146 e~~rLk~iae~qleEALesl~~EReqk~~Lrk 177 (717)
T PF09730_consen 146 EAARLKEIAEKQLEEALESLKSEREQKNALRK 177 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 465
>PRK11281 hypothetical protein; Provisional
Probab=74.53 E-value=31 Score=39.03 Aligned_cols=112 Identities=13% Similarity=0.184 Sum_probs=0.0
Q ss_pred CCccccchhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhh--------hHHHHHH
Q 012184 342 NDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER--------SRCFKLE 413 (469)
Q Consensus 342 ~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~--------~~~~~~~ 413 (469)
...|...+...+.++.......+..+.....+...++...+.++..+.+...++++.+.++.... .+...++
T Consensus 119 ~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ 198 (1113)
T PRK11281 119 STLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQ 198 (1113)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhh-----------HHHHHHHHHHHHHHHHHHHHHhhhh
Q 012184 414 AQIAELQKMLESSQT-----------IENEVQILRQQKSAFEQEMERATSV 453 (469)
Q Consensus 414 ~~~~e~~~~l~~~~~-----------~e~e~~~~~q~~~~~~~~~~~~~~~ 453 (469)
.++.-++.+....++ .+.+++.+.++.++.+++++.+++.
T Consensus 199 ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~ 249 (1113)
T PRK11281 199 AEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEA 249 (1113)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 466
>PHA01750 hypothetical protein
Probab=74.51 E-value=9 Score=26.39 Aligned_cols=36 Identities=17% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 012184 391 LSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 426 (469)
Q Consensus 391 ~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~ 426 (469)
..+|+..++.|++..+-+.+.+++++.|+.+++...
T Consensus 40 V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~dk~ 75 (75)
T PHA01750 40 VNSELDNLKTEIEELKIKQDELSRQVEEIKRKLDKK 75 (75)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccC
No 467
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=74.49 E-value=40 Score=35.66 Aligned_cols=98 Identities=17% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhh-------
Q 012184 356 IKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIA-ELQKMLESSQ------- 427 (469)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~-e~~~~l~~~~------- 427 (469)
|+.+..+....+...+...++|-+.++..+.+++.+.+.+++..+++-+-++..+..-..+. |+++.|..++
T Consensus 439 Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe 518 (861)
T PF15254_consen 439 LQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLE 518 (861)
T ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012184 428 TIENEVQILRQQKSAFEQEMERATSV 453 (469)
Q Consensus 428 ~~e~e~~~~~q~~~~~~~~~~~~~~~ 453 (469)
.-|+|.+-|.-.+.|-+.|+++++++
T Consensus 519 ~sekEN~iL~itlrQrDaEi~RL~eL 544 (861)
T PF15254_consen 519 ASEKENQILGITLRQRDAEIERLREL 544 (861)
T ss_pred HHHhhhhHhhhHHHHHHHHHHHHHHH
No 468
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=74.44 E-value=16 Score=37.80 Aligned_cols=107 Identities=8% Similarity=0.137 Sum_probs=0.0
Q ss_pred hhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh-h
Q 012184 350 RTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-T 428 (469)
Q Consensus 350 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~-~ 428 (469)
+.+.+.++......+....+...+... +.+++++++++++++..-=.--.++++.+++.++++.+.+...++.+... +
T Consensus 163 ~~~~~~~~~~~k~~~~~w~~~~~~Lp~-~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~ 241 (555)
T TIGR03545 163 VETAEEIEKSLKAMQQKWKKRKKDLPN-KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKND 241 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 012184 429 IENEVQILRQQKSAFEQEMERATSVQTQG 457 (469)
Q Consensus 429 ~e~e~~~~~q~~~~~~~~~~~~~~~q~q~ 457 (469)
++.+.+++++++.++++.-++.=.+.++.
T Consensus 242 l~~~~~~~~~~~~~lk~ap~~D~~~L~~~ 270 (555)
T TIGR03545 242 LQNDKKQLKADLAELKKAPQNDLKRLENK 270 (555)
T ss_pred HHHhHHHHHHHHHHHHhccHhHHHHHHHH
No 469
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=74.43 E-value=55 Score=28.10 Aligned_cols=106 Identities=24% Similarity=0.326 Sum_probs=0.0
Q ss_pred hhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHH-----------HHHHHHHHhhhHHHHHHHHHH
Q 012184 349 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELS-----------SVQGQLVAERSRCFKLEAQIA 417 (469)
Q Consensus 349 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~-----------~~~~~l~~~~~~~~~~~~~~~ 417 (469)
+...+..|+++.+.++-....+......+..+....+...+....+-. ++..+|...+.+|.-|++++.
T Consensus 2 visALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLe 81 (178)
T PF14073_consen 2 VISALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLE 81 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----------HHHHHHHHhhhHHHH-------HHHHHHHHHHHHHHHHHhhhhc
Q 012184 418 -----------ELQKMLESSQTIENE-------VQILRQQKSAFEQEMERATSVQ 454 (469)
Q Consensus 418 -----------e~~~~l~~~~~~e~e-------~~~~~q~~~~~~~~~~~~~~~q 454 (469)
|...-++....++++ ++....+++.+|++.-++...|
T Consensus 82 yMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q 136 (178)
T PF14073_consen 82 YMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQ 136 (178)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
No 470
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=74.41 E-value=29 Score=33.41 Aligned_cols=89 Identities=9% Similarity=0.099 Sum_probs=0.0
Q ss_pred hhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHH-------HHHHHHHHH
Q 012184 368 TEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIEN-------EVQILRQQK 440 (469)
Q Consensus 368 ~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~-------e~~~~~q~~ 440 (469)
.....+..+.+.++++++.++..++.++.+++.++...+..+...+.++...+++++..+.|-+ ++++.+.+.
T Consensus 76 ~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~a~~~~ 155 (334)
T TIGR00998 76 TNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFKKGLISREELDHARKAL 155 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhccc
Q 012184 441 SAFEQEMERATSVQTQ 456 (469)
Q Consensus 441 ~~~~~~~~~~~~~q~q 456 (469)
.+.+.+++.+++.+.+
T Consensus 156 ~~a~~~l~~~~~~~~~ 171 (334)
T TIGR00998 156 LSAKAALNAAIQEQLN 171 (334)
T ss_pred HHHHHHHHHHHHHHHH
No 471
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=74.40 E-value=41 Score=34.79 Aligned_cols=100 Identities=18% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh----h
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----T 428 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~----~ 428 (469)
+..+..+.......+.....+...++..++.++..+.....++..+++........+..|+.++...+.++.... +
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~ 362 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEK 362 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 012184 429 IENEVQILRQQKSAFEQEMERATS 452 (469)
Q Consensus 429 ~e~e~~~~~q~~~~~~~~~~~~~~ 452 (469)
.......+...++++..+.++++.
T Consensus 363 ~k~~~~~l~~~Lqql~~Eae~Ak~ 386 (522)
T PF05701_consen 363 AKEAMSELPKALQQLSSEAEEAKK 386 (522)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
No 472
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=74.33 E-value=41 Score=34.27 Aligned_cols=109 Identities=12% Similarity=0.122 Sum_probs=0.0
Q ss_pred cchhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 012184 347 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 426 (469)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~ 426 (469)
+.+..++..|....-+....++...+..++++.++...++......++...++.++...|+..+..+.++.|..+.+.+.
T Consensus 417 ~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el 496 (607)
T KOG0240|consen 417 DILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTALEEL 496 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h-----hHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 012184 427 Q-----TIENEVQILRQQKSAFEQEMERATSVQT 455 (469)
Q Consensus 427 ~-----~~e~e~~~~~q~~~~~~~~~~~~~~~q~ 455 (469)
- .+++....+.|.++..-+.+++...-|+
T Consensus 497 ~~~~~~~~~~~~~~~~~n~~sel~sl~~~~~~~~ 530 (607)
T KOG0240|consen 497 AVNYDQKSEEKESKLSQNLKSELQSLQEPSEHQS 530 (607)
T ss_pred HHhhhHHHHHHhhhhhhhhHHHHHhhhhcccchh
No 473
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=74.26 E-value=43 Score=27.96 Aligned_cols=81 Identities=16% Similarity=0.220 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHH
Q 012184 367 LTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ------TIENEVQILRQQK 440 (469)
Q Consensus 367 ~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~------~~e~e~~~~~q~~ 440 (469)
..........+......+.+.+-+++.++..++.++...-..+..++.+.+++.++...+. .+-..++..-.+.
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~~~e~ 108 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARLQAAASEA 108 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 012184 441 SAFEQEM 447 (469)
Q Consensus 441 ~~~~~~~ 447 (469)
+...+++
T Consensus 109 eeeSe~l 115 (150)
T PF07200_consen 109 EEESEEL 115 (150)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
No 474
>PRK11020 hypothetical protein; Provisional
Probab=74.24 E-value=22 Score=27.74 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 012184 397 SVQGQLVAERSRCFKLEAQIAELQKM--LESSQTIENEVQILRQQKSAFEQEMERATSVQTQ 456 (469)
Q Consensus 397 ~~~~~l~~~~~~~~~~~~~~~e~~~~--l~~~~~~e~e~~~~~q~~~~~~~~~~~~~~~q~q 456 (469)
.++++++.+..+++..+.+++..+.+ -..+-++++|++.+..+++++.....+.-..+.|
T Consensus 2 ~~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~ 63 (118)
T PRK11020 2 VEKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQ 63 (118)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 475
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=74.23 E-value=20 Score=35.13 Aligned_cols=69 Identities=25% Similarity=0.223 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 012184 388 HSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERATSVQTQ 456 (469)
Q Consensus 388 ~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~----~~e~e~~~~~q~~~~~~~~~~~~~~~q~q 456 (469)
.++..+..++....-..++++..+++++-+|++++....| +|++|..+.+++..+.+++..+....|+|
T Consensus 61 ~~q~~~~q~q~~~~~~~e~~r~~~~~~~aeel~~~~~~eq~rlk~le~er~~~~~~~k~ae~~~k~a~~~~kq 133 (387)
T PRK09510 61 VEQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQ 133 (387)
T ss_pred HHHHHHHHHhHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=74.21 E-value=58 Score=33.01 Aligned_cols=98 Identities=11% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHhhhHHHH
Q 012184 354 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM-LESSQTIENE 432 (469)
Q Consensus 354 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~-l~~~~~~e~e 432 (469)
..-..+..+|...+.........+..+.+.+...+...+++++.+..++....+++..++.++.--++- +.++.-+-+.
T Consensus 416 ~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEH 495 (518)
T PF10212_consen 416 SYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEH 495 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 012184 433 VQILRQQKSAFEQEMERAT 451 (469)
Q Consensus 433 ~~~~~q~~~~~~~~~~~~~ 451 (469)
+..+..++....++++.++
T Consensus 496 LasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 496 LASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHh
No 477
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=74.04 E-value=59 Score=28.26 Aligned_cols=92 Identities=9% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHhh-hHHHH
Q 012184 356 IKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE--RSRCFKLEAQIAELQKMLESSQ-TIENE 432 (469)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~--~~~~~~~~~~~~e~~~~l~~~~-~~e~e 432 (469)
+.++...+...+.+......+....+.+.+..+.+.+.+.+++..+-... +.....+..-..+..+.++..+ +.+.+
T Consensus 56 L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~e 135 (184)
T PRK13455 56 LDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQIASA 135 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 012184 433 VQILRQQKSAFEQEM 447 (469)
Q Consensus 433 ~~~~~q~~~~~~~~~ 447 (469)
.++..+++...--++
T Consensus 136 k~~a~~~l~~~i~~l 150 (184)
T PRK13455 136 EAAAVKAVRDRAVSV 150 (184)
T ss_pred HHHHHHHHHHHHHHH
No 478
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=74.00 E-value=26 Score=32.39 Aligned_cols=64 Identities=13% Similarity=0.192 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh---------------------HHHHHHHHHHHHHHHHHH
Q 012184 388 HSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQT---------------------IENEVQILRQQKSAFEQE 446 (469)
Q Consensus 388 ~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~---------------------~e~e~~~~~q~~~~~~~~ 446 (469)
+....+.+..++.+...+...+..++.++++.+++|+.+.. .++.++.-++++.++|++
T Consensus 175 ~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k 254 (259)
T PF08657_consen 175 LPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERK 254 (259)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhh
Q 012184 447 MERAT 451 (469)
Q Consensus 447 ~~~~~ 451 (469)
+.+++
T Consensus 255 ~~~Lq 259 (259)
T PF08657_consen 255 KRELQ 259 (259)
T ss_pred HHhcC
No 479
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=73.99 E-value=50 Score=30.64 Aligned_cols=93 Identities=19% Similarity=0.222 Sum_probs=0.0
Q ss_pred cccCCCCCccccchhhhHHHHHHhHHHHhhhhhhhhhhhhhh-HhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHH
Q 012184 336 KFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRF-REKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEA 414 (469)
Q Consensus 336 ~~~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~ 414 (469)
+....+...|. ++....++.+....++....+..++ .+.+.+.+.++.+.+++ +.++...+.+
T Consensus 310 dv~~~~~p~s~------qet~eaKr~e~~~e~qrkEee~rqmFvqrvkekE~elke~Eke----------l~~kf~~lkr 373 (406)
T KOG3859|consen 310 DVDPDNKPFSL------QETYEAKRNEFLGELQRKEEEMRQMFVQRVKEKEAELKEAEKE----------LHEKFDRLKR 373 (406)
T ss_pred cCCCCCCCccH------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH
Q ss_pred HHHHHHHHHHHhh-hHHHHHHHHHHHHHHHH
Q 012184 415 QIAELQKMLESSQ-TIENEVQILRQQKSAFE 444 (469)
Q Consensus 415 ~~~e~~~~l~~~~-~~e~e~~~~~q~~~~~~ 444 (469)
..+|-.++++... +|+.|....++.+.+.+
T Consensus 374 ~h~eEk~kle~~rr~Leee~~~f~~rk~~~~ 404 (406)
T KOG3859|consen 374 LHQEEKKKLEEKRKQLEEEVNAFQRRKTAAE 404 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 480
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=73.91 E-value=14 Score=34.51 Aligned_cols=60 Identities=17% Similarity=0.292 Sum_probs=0.0
Q ss_pred hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 012184 373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENE 432 (469)
Q Consensus 373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e 432 (469)
+...|+-.+.+.++.+.+..++-+++-.++..++..+.-|+-+.+|+.+.|.+.+++-++
T Consensus 148 qVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdeliee 207 (405)
T KOG2010|consen 148 QVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELIEE 207 (405)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>PRK00295 hypothetical protein; Provisional
Probab=73.72 E-value=29 Score=24.60 Aligned_cols=51 Identities=10% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184 391 LSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFE 444 (469)
Q Consensus 391 ~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~~ 444 (469)
++..+.+++.++.-...-+.+|...+.+.++++ ..+++++..+.+++...+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I---~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVI---ERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhh
No 482
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=73.72 E-value=1.1 Score=45.12 Aligned_cols=85 Identities=14% Similarity=0.298 Sum_probs=0.0
Q ss_pred hhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHH
Q 012184 369 EVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSR----CFKLEAQIAELQKMLESSQ-TIENEVQILRQQKSAF 443 (469)
Q Consensus 369 ~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~----~~~~~~~~~e~~~~l~~~~-~~e~e~~~~~q~~~~~ 443 (469)
+...+.++.+++|..+++.+....+.|++.+.+|...+++ +.+.+..+++-+++|++.| +.+.++..+--.+-.+
T Consensus 366 ~~~~~~e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~v 445 (495)
T PF12004_consen 366 ESMKEVEKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAV 445 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhh
Q ss_pred HHHHHHhhhh
Q 012184 444 EQEMERATSV 453 (469)
Q Consensus 444 ~~~~~~~~~~ 453 (469)
|+|+.++...
T Consensus 446 EeELrre~~~ 455 (495)
T PF12004_consen 446 EEELRREHAE 455 (495)
T ss_dssp ----------
T ss_pred hhhhhhhHHH
No 483
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=73.67 E-value=47 Score=34.62 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHH
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE-----------RSRCFKLEAQIAELQK 421 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~-----------~~~~~~~~~~~~e~~~ 421 (469)
|..+..+.+++..........+.+|+.++.+.+.-.+++.+.+..++.+++.+ +.....+++-.+|+.+
T Consensus 455 I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~r 534 (961)
T KOG4673|consen 455 INQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTR 534 (961)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh-hcc
Q 012184 422 MLESSQTIENEVQILRQQKSAFEQEMERATS-VQT 455 (469)
Q Consensus 422 ~l~~~~~~e~e~~~~~q~~~~~~~~~~~~~~-~q~ 455 (469)
+....-.+...++.++.+...++..++.+.. +|+
T Consensus 535 q~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk 569 (961)
T KOG4673|consen 535 QKDYYSNSRALAAALEAQALAEQATNDEARSDLQK 569 (961)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHH
No 484
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=73.51 E-value=21 Score=38.63 Aligned_cols=127 Identities=17% Similarity=0.119 Sum_probs=0.0
Q ss_pred chhhhHHH--hhcccccccCcccccccccCCCCCccccchhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchh
Q 012184 312 AASVTAAY--ALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHS 389 (469)
Q Consensus 312 ~~~~~~~~--~~gg~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 389 (469)
+.+.+|+. .+||.......++.......-..-.|+ +++....++ +.+...-....--+.+.++.++.+
T Consensus 305 DSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlSt------LRYadrAkr----IvN~avvNedpnarvirElReEve 374 (1714)
T KOG0241|consen 305 DSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLST------LRYADRAKR----IVNHAVVNEDPNARVIRELREEVE 374 (1714)
T ss_pred hHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHH------HHHHHHHHH----hhccccccCCchHHHHHHHHHHHH
Q ss_pred hHHHHHHH-HHHHHHHhhhHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHH
Q 012184 390 ELSKELSS-VQGQLVAERSRCFKLEAQIAELQKM-LESSQTIENEVQILRQQKSAFEQEME 448 (469)
Q Consensus 390 e~~~el~~-~~~~l~~~~~~~~~~~~~~~e~~~~-l~~~~~~e~e~~~~~q~~~~~~~~~~ 448 (469)
++..+|.+ -..++...++++++.++.++|+..- ++.+.+.|...++.+++++.+--.++
T Consensus 375 ~lr~qL~~ae~~~~~el~e~l~esekli~ei~~twEEkl~ktE~in~erq~~L~~~gis~~ 435 (1714)
T KOG0241|consen 375 KLREQLEQAEAMKLPELKEKLEESEKLIKEITVTWEEKLRKTEEINQERQAQLESMGISLE 435 (1714)
T ss_pred HHHHHHhhhhhccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 485
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=73.49 E-value=21 Score=34.49 Aligned_cols=94 Identities=13% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHH
Q 012184 362 VLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQT----IENEVQILR 437 (469)
Q Consensus 362 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~----~e~e~~~~~ 437 (469)
.+.+.-....+.++.|+.+..-+.+-++-..+|-++++.-=.++++-|.++.+.+++.+.+--..++ ||.++.-++
T Consensus 129 SlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~lq 208 (558)
T PF15358_consen 129 SLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVLKQNSALLEEKLRYLQ 208 (558)
T ss_pred hHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccchHHHHHHHHHHH
Q ss_pred HHHH-----HHHHHHHHhhhhcc
Q 012184 438 QQKS-----AFEQEMERATSVQT 455 (469)
Q Consensus 438 q~~~-----~~~~~~~~~~~~q~ 455 (469)
++++ +.+.++++++++.+
T Consensus 209 ~qLqdE~prrqe~e~qELeqkle 231 (558)
T PF15358_consen 209 QQLQDETPRRQEAEWQELEQKLE 231 (558)
T ss_pred HHhcccCcchhhhhHHHHHHHHh
No 486
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=73.47 E-value=58 Score=27.86 Aligned_cols=97 Identities=13% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHhh
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE-----RSRCFKLEAQIAELQKMLESSQ 427 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~-----~~~~~~~~~~~~e~~~~l~~~~ 427 (469)
...+.++...+...+........+.+...++.+..+.+.+++-.++..+-... .+.+.+.+.+...+.++-+..-
T Consensus 48 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~i 127 (167)
T PRK08475 48 KNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEELM 127 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 012184 428 TIENEVQILRQQKSAFEQEMER 449 (469)
Q Consensus 428 ~~e~e~~~~~q~~~~~~~~~~~ 449 (469)
+.|++....+-+.+-..+..++
T Consensus 128 e~Ek~~a~~elk~eii~~~~~~ 149 (167)
T PRK08475 128 EFEVRKMEREVVEEVLNELFES 149 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
No 487
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=73.41 E-value=4.5 Score=45.22 Aligned_cols=100 Identities=13% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 012184 355 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQ 434 (469)
Q Consensus 355 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~ 434 (469)
....+...++..+.+......++. -+..+....+.+++-++.+++-+..|++..+.++++++.+++.++-++.+++.+
T Consensus 2085 ~~~~~qQ~~qQq~~~~~~~~~ql~--~qq~q~~~~~r~q~~~~~r~~Q~rqQq~~~q~qQqqq~q~qq~~q~~q~~q~Qq 2162 (2220)
T KOG3598|consen 2085 SSETRQQIMQQQMREKLAAHHQLV--EQQKQRDAREREQREREAREHQERQQQEAYQKQQQQQEQKQQIEQNNQIMQEQQ 2162 (2220)
T ss_pred ccchHHHHHHHhHHHHhhHHHHHH--HhhhcccccccccchhhhhhHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHh
Q ss_pred H------HHHHHHHHHHHHHHhhhhccc
Q 012184 435 I------LRQQKSAFEQEMERATSVQTQ 456 (469)
Q Consensus 435 ~------~~q~~~~~~~~~~~~~~~q~q 456 (469)
. .+|++....++-.++.+.|+|
T Consensus 2163 ~~~~~qa~qq~qplf~RQglqqtqqQqq 2190 (2220)
T KOG3598|consen 2163 REEAYQAEQQRQPLFRRQGLQQTQQQQQ 2190 (2220)
T ss_pred hhcccccccccchhhHHHHHHHHHHHHH
No 488
>PF05917 DUF874: Helicobacter pylori protein of unknown function (DUF874); InterPro: IPR008592 This family consists of several hypothetical proteins specific to Helicobacter pylori. The function of this family is unknown.
Probab=73.29 E-value=21 Score=32.71 Aligned_cols=87 Identities=17% Similarity=0.147 Sum_probs=0.0
Q ss_pred hhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 012184 369 EVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIA-ELQKMLESSQTIENEVQILRQQKSAFEQEM 447 (469)
Q Consensus 369 ~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~-e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~ 447 (469)
....+.++-+++-+..+.......-||++.++.-.+.+.++..-+..++ |.++-.+..|+..+..-++.|+++..+++.
T Consensus 124 ~KqiEleQekkeaEnaRdkANKSgIELEQErQKT~q~~~e~~n~qiK~EQEKQKTeqEkQk~~ksqIklEQEkQKT~qeq 203 (398)
T PF05917_consen 124 DKQIELEQEKKEAENARDKANKSGIELEQERQKTEQEGIETTNNQIKVEQEKQKTEQEKQKENKSQIKLEQEKQKTEQEQ 203 (398)
T ss_pred hHHHHHHHHHHHhhhhhhhhccccchHHHHHHHHHHHhhhhhHhHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHH
Q ss_pred HHhhhhcc
Q 012184 448 ERATSVQT 455 (469)
Q Consensus 448 ~~~~~~q~ 455 (469)
++.-..|+
T Consensus 204 qkliKeQK 211 (398)
T PF05917_consen 204 QKLIKEQK 211 (398)
T ss_pred HHHHHHHH
No 489
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=73.27 E-value=45 Score=35.14 Aligned_cols=92 Identities=14% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 012184 354 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEV 433 (469)
Q Consensus 354 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~ 433 (469)
+....++.+++..+.+.+.++..++.+|+..+.++...+.++++...+....+.+..-|+..-+.-++.-....+..+.+
T Consensus 75 e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl 154 (632)
T PF14817_consen 75 ENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRL 154 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 012184 434 QILRQQKSAFEQ 445 (469)
Q Consensus 434 ~~~~q~~~~~~~ 445 (469)
+...++++.+++
T Consensus 155 ~~~~~~~q~~~R 166 (632)
T PF14817_consen 155 QGQVEQLQDIQR 166 (632)
T ss_pred HHHHHHHHHHHh
No 490
>PRK15335 type III secretion system protein SpaM; Provisional
Probab=73.24 E-value=46 Score=26.59 Aligned_cols=95 Identities=23% Similarity=0.256 Sum_probs=0.0
Q ss_pred hhHHHHHHhHHHHhhhhhhhhhhhhhh-HhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH------
Q 012184 351 TDIDAIKEDKRVLELSLTEVRTENSRF-REKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML------ 423 (469)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l------ 423 (469)
.+.+++.....-+...+...+.+..+| +.++=.+.+...-+.++++++..++...+++-.+++.+-++++++.
T Consensus 37 ~e~Eai~~q~agLk~LL~~~r~e~~~l~r~elyallRrqaivRRQ~~~L~Lq~~~iqEKr~elqkeke~~~k~~~yWLRK 116 (147)
T PRK15335 37 AEEEAILEQIAGLKLLLDTLRAENRQLSREEIYTLLRKQSIVRRQIKDLELQIIQIQEKRSELEKKREEFQKKSKYWLRK 116 (147)
T ss_pred HHHHHHHHHHhHHHHHHHHhchhcccccHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred -------HHhhhHHHHHHHHHHHHHHHHH
Q 012184 424 -------ESSQTIENEVQILRQQKSAFEQ 445 (469)
Q Consensus 424 -------~~~~~~e~e~~~~~q~~~~~~~ 445 (469)
+..|+.-..+.+++|+-..+|+
T Consensus 117 e~kY~rW~~~qkr~~~~~~l~qEEtE~EE 145 (147)
T PRK15335 117 EGNYQRWIIRQKRFYIQREIQQEEAESEE 145 (147)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhhhh
No 491
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=73.19 E-value=42 Score=39.44 Aligned_cols=107 Identities=16% Similarity=0.203 Sum_probs=0.0
Q ss_pred cccchhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHH-----HHHH
Q 012184 345 SEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQ-----IAEL 419 (469)
Q Consensus 345 s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~-----~~e~ 419 (469)
|...++.+....-+...++...+.....+...++..+.+.+..+++...++..++.+...=+.|.+++..+ ..++
T Consensus 1230 sN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~ 1309 (1822)
T KOG4674|consen 1230 SNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDY 1309 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHH
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 012184 420 QKMLESSQTIENEVQILRQQKSAFEQEMERAT 451 (469)
Q Consensus 420 ~~~l~~~~~~e~e~~~~~q~~~~~~~~~~~~~ 451 (469)
++-...+..|+.+++..+...+.+...+.+.+
T Consensus 1310 ~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1310 EKLKSEISRLKEELEEKENLIAELKKELNRLQ 1341 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>smart00284 OLF Olfactomedin-like domains.
Probab=73.09 E-value=77 Score=29.18 Aligned_cols=186 Identities=13% Similarity=-0.034 Sum_probs=0.0
Q ss_pred CEEEcccCCCcccCCceEEE----EccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCC
Q 012184 1 MLLRCSIRNYTLLEGVVMVF----DLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS 76 (469)
Q Consensus 1 l~~~GG~~~~~~~~~~~~~~----d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~ 76 (469)
+|++.|.. ...+ .+..| |+..+.+...-.+ |.+-.|-..++.+|.+|+--.
T Consensus 37 ~wv~~~~~--~~~~-~v~ey~~~~~f~~~~~~~~~~L----------------p~~~~GtG~VVYngslYY~~~------ 91 (255)
T smart00284 37 YWYMPLNT--RVLR-SVREYSSMSDFQMGKNPTDHPL----------------PHAGQGTGVVVYNGSLYFNKF------ 91 (255)
T ss_pred EEEEcccc--CCCc-EEEEecCHHHHhccCCceEEEC----------------CCccccccEEEECceEEEEec------
Q ss_pred CcceEEEEECCCCeEEEeecCCCCCCCCcc------------eEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEE
Q 012184 77 DSMIVRFIDLETNLCGVMETSGKVPVARGG------------HSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDA 144 (469)
Q Consensus 77 ~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~------------~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~ 144 (469)
.++.+..||+.+.+-.... .+|.+... .-.++-.+-|+++=....+.. .-.+-.+|+.+..-..
T Consensus 92 ~s~~iiKydL~t~~v~~~~---~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g-~ivvSkLnp~tL~ve~ 167 (255)
T smart00284 92 NSHDICRFDLTTETYQKEP---LLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAG-KIVISKLNPATLTIEN 167 (255)
T ss_pred CCccEEEEECCCCcEEEEE---ecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCC-CEEEEeeCcccceEEE
Q ss_pred eeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE---CCEEEEE
Q 012184 145 VEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI---DENWYIV 221 (469)
Q Consensus 145 ~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~---~~~l~v~ 221 (469)
.- ..+.++...+-+.+-=+.||+.-. .......-.+.||+.+.+=..+.+ +.+.+...+++... +.+||+.
T Consensus 168 tW---~T~~~k~sa~naFmvCGvLY~~~s-~~~~~~~I~yayDt~t~~~~~~~i--~f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 168 TW---ITTYNKRSASNAFMICGILYVTRS-LGSKGEKVFYAYDTNTGKEGHLDI--PFENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred EE---EcCCCcccccccEEEeeEEEEEcc-CCCCCcEEEEEEECCCCccceeee--eeccccccceeceeCCCCCeEEEE
No 493
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=73.06 E-value=1e+02 Score=30.59 Aligned_cols=199 Identities=11% Similarity=0.053 Sum_probs=0.0
Q ss_pred CceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCE-EEEEccccCCCCCcceEEEEECCCCeEEEe---------
Q 012184 25 LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTK-LLILGGHYKKSSDSMIVRFIDLETNLCGVM--------- 94 (469)
Q Consensus 25 ~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~-iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~--------- 94 (469)
.+|..++... ..+-..+.+..+++. +++.|.... +++-+-.-.+|..+
T Consensus 166 ~tW~~~~~~~---------------~~p~~~~~i~~~~~~~~~ivg~~G~-------v~~S~D~G~tW~~~~~~t~~~~l 223 (398)
T PLN00033 166 ETWERIPLSP---------------KLPGEPVLIKATGPKSAEMVTDEGA-------IYVTSNAGRNWKAAVEETVSATL 223 (398)
T ss_pred CCceECcccc---------------CCCCCceEEEEECCCceEEEeccce-------EEEECCCCCCceEcccccccccc
Q ss_pred ------ecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe-EEEeeeCCCCCCCCCCceEEEEcCcE
Q 012184 95 ------ETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT-WDAVEVTQTPPAPRYDHSAALHANRY 167 (469)
Q Consensus 95 ------~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~-W~~~~~~g~~p~~r~~~~~~~~~~~~ 167 (469)
...+..+..-..+++....+.-++.-|..+. +++-+-...+ |..+ ..|.++...++....++.
T Consensus 224 ~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G~------~~~s~d~G~~~W~~~----~~~~~~~l~~v~~~~dg~ 293 (398)
T PLN00033 224 NRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRGN------FYLTWEPGQPYWQPH----NRASARRIQNMGWRADGG 293 (398)
T ss_pred cccccccccccceeccceeeEEEcCCCCEEEEECCcc------EEEecCCCCcceEEe----cCCCccceeeeeEcCCCC
Q ss_pred EEEEecCCCCcccCcEEEEECCCC-----ceEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCC
Q 012184 168 LIVFGGCSHSIFFNDLHVLDLQTN-----EWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTK 240 (469)
Q Consensus 168 l~v~GG~~~~~~~~~i~~~d~~~~-----~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~ 240 (469)
+++.|..+ .++.-+-... +|..+ +.+..+.....+.. ++.++++|. ..-+++-...-
T Consensus 294 l~l~g~~G------~l~~S~d~G~~~~~~~f~~~----~~~~~~~~l~~v~~~~d~~~~a~G~------~G~v~~s~D~G 357 (398)
T PLN00033 294 LWLLTRGG------GLYVSKGTGLTEEDFDFEEA----DIKSRGFGILDVGYRSKKEAWAAGG------SGILLRSTDGG 357 (398)
T ss_pred EEEEeCCc------eEEEecCCCCcccccceeec----ccCCCCcceEEEEEcCCCcEEEEEC------CCcEEEeCCCC
Q ss_pred CcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEe
Q 012184 241 LAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFG 277 (469)
Q Consensus 241 ~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~G 277 (469)
..|+......... -.+..+...+++..|++|
T Consensus 358 ~tW~~~~~~~~~~------~~ly~v~f~~~~~g~~~G 388 (398)
T PLN00033 358 KSWKRDKGADNIA------ANLYSVKFFDDKKGFVLG 388 (398)
T ss_pred cceeEccccCCCC------cceeEEEEcCCCceEEEe
No 494
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=72.93 E-value=1.1e+02 Score=30.82 Aligned_cols=187 Identities=14% Similarity=0.129 Sum_probs=0.0
Q ss_pred CEEEcccCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcc
Q 012184 1 MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSM 79 (469)
Q Consensus 1 l~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~ 79 (469)
+|++.|..++ .|-.||+....-.+...- +..-..++.. ...-|+..+..++.
T Consensus 92 ~y~~sgG~~~-----~Vkiwdl~~kl~hr~lkd------------------h~stvt~v~YN~~DeyiAsvs~gGd---- 144 (673)
T KOG4378|consen 92 LYEISGGQSG-----CVKIWDLRAKLIHRFLKD------------------HQSTVTYVDYNNTDEYIASVSDGGD---- 144 (673)
T ss_pred eeeeccCcCc-----eeeehhhHHHHHhhhccC------------------CcceeEEEEecCCcceeEEeccCCc----
Q ss_pred eEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe----EEEeeeCCCCCCCC
Q 012184 80 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT----WDAVEVTQTPPAPR 155 (469)
Q Consensus 80 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~----W~~~~~~g~~p~~r 155 (469)
+...++.|+.=..-- ..|..-.---+-....+-++++-....+. |.+||+.... |.+.. ..|.
T Consensus 145 -iiih~~~t~~~tt~f---~~~sgqsvRll~ys~skr~lL~~asd~G~----VtlwDv~g~sp~~~~~~~H-----sAP~ 211 (673)
T KOG4378|consen 145 -IIIHGTKTKQKTTTF---TIDSGQSVRLLRYSPSKRFLLSIASDKGA----VTLWDVQGMSPIFHASEAH-----SAPC 211 (673)
T ss_pred -EEEEecccCccccce---ecCCCCeEEEeecccccceeeEeeccCCe----EEEEeccCCCcccchhhhc-----cCCc
Q ss_pred CCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEE
Q 012184 156 YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIV 235 (469)
Q Consensus 156 ~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~ 235 (469)
.+-+++.. +..|++.=|++ ..|++||.....-.. .+-...-..+++..++-.|++-|.... .++.
T Consensus 212 ~gicfsps-ne~l~vsVG~D-----kki~~yD~~s~~s~~-----~l~y~~Plstvaf~~~G~~L~aG~s~G----~~i~ 276 (673)
T KOG4378|consen 212 RGICFSPS-NEALLVSVGYD-----KKINIYDIRSQASTD-----RLTYSHPLSTVAFSECGTYLCAGNSKG----ELIA 276 (673)
T ss_pred CcceecCC-ccceEEEeccc-----ceEEEeecccccccc-----eeeecCCcceeeecCCceEEEeecCCc----eEEE
Q ss_pred EECCCCc
Q 012184 236 LNMTKLA 242 (469)
Q Consensus 236 ~d~~~~~ 242 (469)
||+....
T Consensus 277 YD~R~~k 283 (673)
T KOG4378|consen 277 YDMRSTK 283 (673)
T ss_pred EecccCC
No 495
>PF15556 Zwint: ZW10 interactor
Probab=72.83 E-value=64 Score=28.10 Aligned_cols=107 Identities=18% Similarity=0.209 Sum_probs=0.0
Q ss_pred chhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHh
Q 012184 348 DVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER-SRCFKLEAQIAELQKMLESS 426 (469)
Q Consensus 348 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~-~~~~~~~~~~~e~~~~l~~~ 426 (469)
+|..-.+.++.-.-..-..+.+..+...+|+.-++.++...+...+.+...+.+-+..+ ..++.|.+-.+|.+++....
T Consensus 74 tYqehVEaIk~alt~aL~q~eEaqrK~~qLqeA~eqlqaKKqva~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~ 153 (252)
T PF15556_consen 74 TYQEHVEAIKSALTQALPQVEEAQRKRTQLQEALEQLQAKKQVAMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGT 153 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h-hHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 012184 427 Q-TIENEVQILRQQKSAFEQEMERATSVQ 454 (469)
Q Consensus 427 ~-~~e~e~~~~~q~~~~~~~~~~~~~~~q 454 (469)
+ +|++-.+++.-.+++..++.++++.-|
T Consensus 154 qqeLe~l~qeL~~lkqQa~qeqdKLQR~q 182 (252)
T PF15556_consen 154 QQELERLYQELGTLKQQAGQEQDKLQRHQ 182 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=72.77 E-value=22 Score=37.52 Aligned_cols=88 Identities=19% Similarity=0.114 Sum_probs=0.0
Q ss_pred hhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH----HHHHHHHHHHHHHH
Q 012184 374 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQI----LRQQKSAFEQEMER 449 (469)
Q Consensus 374 ~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~----~~q~~~~~~~~~~~ 449 (469)
...+++.++..++..++.+++-++......+++.+..+.+.+.+|..++..+.++..+|... ++-.+|..++++.+
T Consensus 216 v~~~qe~La~~qe~eE~qkreeEE~~r~eeEEer~~ee~E~~~eEak~kkKekekek~er~KaeGklLTakQK~~~a~ae 295 (1064)
T KOG1144|consen 216 VRAMQEALAKRQEEEERQKREEEERLRREEEEERRREEEEAQEEEAKEKKKEKEKEKKERKKAEGKLLTAKQKEEAALAE 295 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHhhHHHHHHHH
Q ss_pred hhhhcccCCCce
Q 012184 450 ATSVQTQGSGGV 461 (469)
Q Consensus 450 ~~~~q~q~~~~~ 461 (469)
+..+|-+.+||+
T Consensus 296 a~l~~ll~sg~~ 307 (1064)
T KOG1144|consen 296 AFLKQLLASGGG 307 (1064)
T ss_pred HHHHHHHhcCCC
No 497
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=72.51 E-value=19 Score=31.95 Aligned_cols=69 Identities=16% Similarity=0.214 Sum_probs=0.0
Q ss_pred hhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 012184 350 RTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAE 418 (469)
Q Consensus 350 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e 418 (469)
..+.+++..+.+++.+.-.....+.+.|+++...+-.+..|+..+++.++++|...++.++....-.+|
T Consensus 89 KaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~~~~v~ee 157 (292)
T KOG4005|consen 89 KARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQHNTRVIEE 157 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHhhHHHhh
No 498
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=72.44 E-value=34 Score=28.84 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHhh------------hH
Q 012184 364 ELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE--RSRCFKLEAQIAELQKMLESSQ------------TI 429 (469)
Q Consensus 364 ~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~--~~~~~~~~~~~~e~~~~l~~~~------------~~ 429 (469)
.+.+.....++..++.++++++......+.|+..+...|.-+ |+.+++|..++.+-+++|.... ..
T Consensus 78 ~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v 157 (201)
T KOG4603|consen 78 DEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQV 157 (201)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Q ss_pred HHHHHHHHHH
Q 012184 430 ENEVQILRQQ 439 (469)
Q Consensus 430 e~e~~~~~q~ 439 (469)
.++.+....+
T Consensus 158 ~~~y~~~~~~ 167 (201)
T KOG4603|consen 158 YREYQKYCKE 167 (201)
T ss_pred HHHHHHHHHH
No 499
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=72.41 E-value=60 Score=27.98 Aligned_cols=88 Identities=7% Similarity=0.043 Sum_probs=0.0
Q ss_pred hhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHh------------hhHHHHHHHHHHH
Q 012184 351 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE------------RSRCFKLEAQIAE 418 (469)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~------------~~~~~~~~~~~~e 418 (469)
.+.+....+...+...+....+-+..++.++.+.+......+..++.+..+.+.. ++.+++++.+...
T Consensus 125 ~e~~k~~~Re~~iak~m~K~pq~~a~~~a~~~k~e~~a~a~~~r~erli~eiqe~fGy~vDprd~RF~emLqqkEkeekK 204 (225)
T KOG4848|consen 125 KEPEKFTFREAEIAKNMKKYPQTLAKYEASLVKQEQEADAKEVRLERLIREIQEYFGYWVDPRDPRFEEMLQQKEKEEKK 204 (225)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhHHHHHHHHHH
Q 012184 419 LQKMLESSQTIENEVQILRQ 438 (469)
Q Consensus 419 ~~~~l~~~~~~e~e~~~~~q 438 (469)
..++.....+.|+...++-+
T Consensus 205 ~~KeaKrk~k~ekr~A~lv~ 224 (225)
T KOG4848|consen 205 AVKEAKRKEKQEKRFAELVQ 224 (225)
T ss_pred HHHHHHHHHHHHHHHHHHhc
No 500
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=72.39 E-value=12 Score=34.73 Aligned_cols=68 Identities=16% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184 356 IKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML 423 (469)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l 423 (469)
++.+...++..+.....-..+|.++++.++.++.+++=++++.+.++++++++-.++-..+.++.+++
T Consensus 38 ~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~ 105 (263)
T PRK10803 38 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGG 105 (263)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Done!