Query 012184
Match_columns 469
No_of_seqs 285 out of 2720
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 04:25:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012184.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012184hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zgk_A Kelch-like ECH-associat 100.0 1.6E-46 5.4E-51 359.5 32.0 277 1-314 27-307 (308)
2 3ii7_A Kelch-like protein 7; p 100.0 3.1E-46 1.1E-50 357.1 33.5 274 1-314 14-292 (306)
3 2vpj_A Kelch-like protein 12; 100.0 2.3E-45 7.9E-50 350.2 32.4 277 1-314 17-298 (301)
4 2xn4_A Kelch-like protein 2; s 100.0 4.3E-45 1.5E-49 348.5 34.2 277 1-315 18-298 (302)
5 4asc_A Kelch repeat and BTB do 100.0 6E-45 2.1E-49 349.7 27.2 280 1-323 7-305 (315)
6 2woz_A Kelch repeat and BTB do 100.0 1.4E-43 4.7E-48 340.6 29.2 279 1-322 18-314 (318)
7 2uvk_A YJHT; unknown function, 100.0 3.6E-40 1.2E-44 322.0 28.1 268 1-304 22-352 (357)
8 2xn4_A Kelch-like protein 2; s 100.0 1.4E-39 4.7E-44 310.4 31.5 234 1-265 64-298 (302)
9 1zgk_A Kelch-like ECH-associat 100.0 1.9E-40 6.6E-45 317.3 24.4 257 50-326 12-273 (308)
10 4asc_A Kelch repeat and BTB do 100.0 3.2E-40 1.1E-44 316.8 25.7 241 1-278 48-305 (315)
11 3ii7_A Kelch-like protein 7; p 100.0 2.2E-39 7.5E-44 309.6 31.3 233 1-265 58-293 (306)
12 2woz_A Kelch repeat and BTB do 100.0 1.5E-39 5E-44 312.6 27.2 241 1-277 59-314 (318)
13 2vpj_A Kelch-like protein 12; 100.0 1.6E-38 5.5E-43 302.8 30.3 232 1-265 65-299 (301)
14 2uvk_A YJHT; unknown function, 100.0 9.9E-39 3.4E-43 311.8 25.4 262 47-328 4-329 (357)
15 2zwa_A Leucine carboxyl methyl 100.0 7.3E-38 2.5E-42 330.0 26.9 268 1-294 400-694 (695)
16 2zwa_A Leucine carboxyl methyl 100.0 1.4E-36 5E-41 320.2 25.4 260 50-326 386-676 (695)
17 1k3i_A Galactose oxidase precu 100.0 2E-33 6.8E-38 295.8 15.8 292 1-324 200-530 (656)
18 1k3i_A Galactose oxidase precu 100.0 2.3E-29 7.9E-34 264.9 22.3 263 1-292 256-547 (656)
19 3mbr_X Glutamine cyclotransfer 98.5 8.8E-05 3E-09 66.4 24.4 205 53-292 21-233 (243)
20 3dsm_A Uncharacterized protein 98.4 0.0016 5.4E-08 61.6 31.9 229 16-298 18-257 (328)
21 3dsm_A Uncharacterized protein 98.4 0.00036 1.2E-08 66.1 27.0 226 16-293 65-301 (328)
22 3nol_A Glutamine cyclotransfer 98.2 0.00038 1.3E-08 62.8 22.2 192 56-278 46-244 (262)
23 3mbr_X Glutamine cyclotransfer 98.0 0.0012 4E-08 59.1 20.8 139 16-194 44-183 (243)
24 2iwa_A Glutamine cyclotransfer 98.0 0.0066 2.3E-07 55.2 25.4 205 56-294 24-237 (266)
25 3nok_A Glutaminyl cyclase; bet 97.8 0.0009 3.1E-08 60.4 17.1 189 56-278 58-254 (268)
26 3nol_A Glutamine cyclotransfer 97.8 0.0023 8E-08 57.7 19.4 168 16-223 66-244 (262)
27 3bws_A Protein LP49; two-domai 97.8 0.0049 1.7E-07 60.1 23.3 226 16-296 102-336 (433)
28 2ovr_B FBW7, F-BOX/WD repeat p 97.8 0.037 1.3E-06 54.2 29.3 198 58-294 244-442 (445)
29 3q7m_A Lipoprotein YFGL, BAMB; 97.7 0.028 9.5E-07 53.7 26.4 170 16-242 154-339 (376)
30 2iwa_A Glutamine cyclotransfer 97.7 0.017 5.7E-07 52.5 22.9 181 16-240 45-237 (266)
31 3jrp_A Fusion protein of prote 97.6 0.011 3.7E-07 56.1 22.3 233 16-303 34-297 (379)
32 1l0q_A Surface layer protein; 97.6 0.017 5.9E-07 55.2 23.1 214 16-295 13-234 (391)
33 3bws_A Protein LP49; two-domai 97.6 0.016 5.4E-07 56.4 22.9 228 16-296 145-392 (433)
34 3q7m_A Lipoprotein YFGL, BAMB; 97.5 0.067 2.3E-06 51.0 26.6 217 16-296 64-298 (376)
35 3nok_A Glutaminyl cyclase; bet 97.5 0.0076 2.6E-07 54.4 17.7 138 16-194 76-214 (268)
36 1l0q_A Surface layer protein; 97.5 0.019 6.5E-07 55.0 22.2 216 16-296 55-277 (391)
37 4ery_A WD repeat-containing pr 97.5 0.062 2.1E-06 49.5 25.6 150 62-242 118-270 (312)
38 3hfq_A Uncharacterized protein 97.5 0.02 6.8E-07 53.9 21.6 237 16-293 19-270 (347)
39 1gxr_A ESG1, transducin-like e 97.4 0.062 2.1E-06 49.7 24.7 211 16-292 120-335 (337)
40 4aez_A CDC20, WD repeat-contai 97.4 0.028 9.4E-07 54.3 22.8 198 57-296 180-382 (401)
41 3vgz_A Uncharacterized protein 97.4 0.086 2.9E-06 49.3 28.8 224 16-297 70-306 (353)
42 2hqs_A Protein TOLB; TOLB, PAL 97.4 0.026 8.7E-07 55.1 21.9 198 62-297 189-390 (415)
43 1gxr_A ESG1, transducin-like e 97.4 0.056 1.9E-06 50.0 23.3 188 62-296 108-298 (337)
44 1p22_A F-BOX/WD-repeat protein 97.3 0.04 1.4E-06 53.8 22.4 190 56-294 176-365 (435)
45 3v9f_A Two-component system se 97.3 0.024 8.1E-07 60.3 22.2 224 16-294 428-656 (781)
46 2z3z_A Dipeptidyl aminopeptida 97.3 0.089 3E-06 54.9 26.0 196 78-296 234-437 (706)
47 2ovr_B FBW7, F-BOX/WD repeat p 97.3 0.14 4.7E-06 50.0 26.0 190 59-297 205-394 (445)
48 1k8k_C P40, ARP2/3 complex 41 97.2 0.07 2.4E-06 50.2 22.3 233 16-304 31-286 (372)
49 3scy_A Hypothetical bacterial 97.2 0.1 3.5E-06 49.3 23.0 195 16-248 30-250 (361)
50 2ojh_A Uncharacterized protein 97.1 0.072 2.5E-06 48.0 20.9 229 16-298 23-262 (297)
51 4ery_A WD repeat-containing pr 97.1 0.15 5.3E-06 46.8 25.3 192 62-296 76-270 (312)
52 3jrp_A Fusion protein of prote 97.1 0.044 1.5E-06 51.7 19.7 194 62-295 22-241 (379)
53 4a2l_A BT_4663, two-component 97.1 0.096 3.3E-06 55.7 24.1 225 16-294 428-659 (795)
54 3jro_A Fusion protein of prote 97.1 0.031 1.1E-06 59.1 19.9 236 16-303 32-295 (753)
55 1p22_A F-BOX/WD-repeat protein 97.1 0.045 1.5E-06 53.4 19.8 149 57-240 217-365 (435)
56 4aez_A CDC20, WD repeat-contai 97.0 0.14 4.7E-06 49.2 22.2 220 16-297 114-339 (401)
57 4aow_A Guanine nucleotide-bind 97.0 0.12 4E-06 47.9 21.0 152 115-295 186-338 (340)
58 1ri6_A Putative isomerase YBHE 96.9 0.15 5E-06 47.3 21.4 164 114-303 141-319 (343)
59 1kb0_A Quinohemoprotein alcoho 96.9 0.41 1.4E-05 49.8 26.1 125 56-196 71-207 (677)
60 3mkq_A Coatomer beta'-subunit; 96.9 0.15 5.3E-06 53.9 23.2 178 62-281 66-250 (814)
61 2hqs_A Protein TOLB; TOLB, PAL 96.8 0.055 1.9E-06 52.7 17.9 186 16-248 204-395 (415)
62 1k8k_C P40, ARP2/3 complex 41 96.8 0.33 1.1E-05 45.5 25.5 70 165-249 213-285 (372)
63 1r5m_A SIR4-interacting protei 96.8 0.16 5.6E-06 48.5 21.0 147 61-242 215-363 (425)
64 3fm0_A Protein CIAO1; WDR39,SG 96.8 0.087 3E-06 49.6 18.3 187 62-282 27-217 (345)
65 3ow8_A WD repeat-containing pr 96.7 0.37 1.3E-05 44.7 25.6 184 62-292 133-319 (321)
66 3ow8_A WD repeat-containing pr 96.7 0.37 1.3E-05 44.7 26.2 188 62-295 91-280 (321)
67 3jro_A Fusion protein of prote 96.7 0.045 1.5E-06 57.9 17.5 194 62-295 20-239 (753)
68 2z3z_A Dipeptidyl aminopeptida 96.7 0.26 9E-06 51.2 23.4 153 129-296 234-393 (706)
69 4a2l_A BT_4663, two-component 96.7 0.2 6.9E-06 53.2 22.6 236 16-297 283-529 (795)
70 2ad6_A Methanol dehydrogenase 96.7 0.64 2.2E-05 47.2 25.2 125 56-196 56-193 (571)
71 3v7d_B Cell division control p 96.7 0.53 1.8E-05 45.9 25.3 146 113-297 279-424 (464)
72 3dwl_C Actin-related protein 2 96.6 0.14 4.8E-06 48.5 19.1 236 16-304 34-291 (377)
73 2xdw_A Prolyl endopeptidase; a 96.6 0.55 1.9E-05 49.0 25.1 192 78-296 207-416 (710)
74 1jmx_B Amine dehydrogenase; ox 96.6 0.19 6.6E-06 46.6 19.5 147 16-194 22-179 (349)
75 1vyh_C Platelet-activating fac 96.6 0.27 9.4E-06 47.4 20.8 187 62-295 161-370 (410)
76 1sq9_A Antiviral protein SKI8; 96.6 0.3 1E-05 46.4 20.9 205 64-295 82-323 (397)
77 4gga_A P55CDC, cell division c 96.5 0.62 2.1E-05 44.9 24.6 222 16-295 126-354 (420)
78 1got_B GT-beta; complex (GTP-b 96.5 0.52 1.8E-05 44.0 27.2 192 62-295 108-302 (340)
79 3vl1_A 26S proteasome regulato 96.5 0.36 1.2E-05 46.3 21.3 192 62-296 108-324 (420)
80 3u4y_A Uncharacterized protein 96.5 0.22 7.5E-06 46.1 19.2 185 80-295 109-305 (331)
81 3v9f_A Two-component system se 96.5 0.083 2.8E-06 56.0 17.9 183 16-240 470-656 (781)
82 3e5z_A Putative gluconolactona 96.5 0.49 1.7E-05 43.0 23.9 224 16-298 51-290 (296)
83 3zwl_B Eukaryotic translation 96.4 0.58 2E-05 43.5 22.6 199 62-295 85-305 (369)
84 4e54_B DNA damage-binding prot 96.4 0.084 2.9E-06 51.5 16.0 189 62-294 131-327 (435)
85 3vgz_A Uncharacterized protein 96.4 0.63 2.2E-05 43.1 29.8 153 62-245 152-308 (353)
86 1rwi_B Serine/threonine-protei 96.4 0.38 1.3E-05 42.9 19.2 191 57-294 71-264 (270)
87 4gqb_B Methylosome protein 50; 96.4 0.69 2.4E-05 43.5 22.1 186 62-294 138-331 (344)
88 2xdw_A Prolyl endopeptidase; a 96.3 0.8 2.7E-05 47.8 24.1 208 62-293 135-367 (710)
89 1nir_A Nitrite reductase; hemo 96.3 0.19 6.5E-06 50.8 18.5 193 80-297 249-461 (543)
90 3dm0_A Maltose-binding peripla 96.3 0.7 2.4E-05 48.0 23.4 195 62-293 483-692 (694)
91 1got_B GT-beta; complex (GTP-b 96.3 0.71 2.4E-05 43.1 24.7 166 81-282 166-335 (340)
92 2ojh_A Uncharacterized protein 96.3 0.094 3.2E-06 47.2 14.8 192 16-247 63-265 (297)
93 1ri6_A Putative isomerase YBHE 96.3 0.63 2.1E-05 42.9 20.9 184 80-293 61-261 (343)
94 2v71_A Nuclear distribution pr 96.3 0.088 3E-06 44.3 12.8 32 391-422 47-78 (189)
95 2z2n_A Virginiamycin B lyase; 96.3 0.61 2.1E-05 42.0 24.9 215 16-293 37-254 (299)
96 3oja_B Anopheles plasmodium-re 96.3 0.013 4.5E-07 60.2 9.7 11 287-297 347-357 (597)
97 4a11_B DNA excision repair pro 96.2 0.26 8.9E-06 46.8 18.3 194 63-295 156-366 (408)
98 3hfq_A Uncharacterized protein 96.2 0.74 2.5E-05 42.8 21.1 196 16-248 64-280 (347)
99 2pbi_B Guanine nucleotide-bind 96.2 0.85 2.9E-05 42.9 22.9 137 131-295 177-316 (354)
100 3pe7_A Oligogalacturonate lyas 96.2 0.71 2.4E-05 43.6 20.9 201 16-250 61-283 (388)
101 3fvz_A Peptidyl-glycine alpha- 96.1 0.85 2.9E-05 42.4 27.9 235 16-294 70-322 (329)
102 3v7d_B Cell division control p 96.1 1.1 3.8E-05 43.5 27.3 186 60-292 277-463 (464)
103 3dwl_C Actin-related protein 2 96.1 0.038 1.3E-06 52.5 11.5 196 62-296 22-238 (377)
104 3ei3_B DNA damage-binding prot 96.1 0.63 2.1E-05 44.0 20.2 188 64-296 87-284 (383)
105 2pm7_B Protein transport prote 96.1 0.77 2.6E-05 41.8 20.1 63 63-140 67-133 (297)
106 2z2n_A Virginiamycin B lyase; 96.1 0.76 2.6E-05 41.4 25.7 191 56-295 102-296 (299)
107 4gga_A P55CDC, cell division c 96.1 0.54 1.8E-05 45.4 19.9 92 181-293 301-394 (420)
108 3ott_A Two-component system se 96.1 0.86 2.9E-05 47.9 22.8 223 16-294 393-626 (758)
109 1kb0_A Quinohemoprotein alcoho 96.1 0.71 2.4E-05 48.0 21.7 115 16-146 88-208 (677)
110 3fm0_A Protein CIAO1; WDR39,SG 96.0 1 3.4E-05 42.1 22.0 171 16-225 39-215 (345)
111 3bg1_A Protein SEC13 homolog; 96.0 0.5 1.7E-05 43.6 18.5 203 63-307 71-307 (316)
112 3ei3_B DNA damage-binding prot 96.0 1 3.5E-05 42.5 21.2 176 16-242 97-284 (383)
113 3u1c_A Tropomyosin alpha-1 cha 96.0 0.11 3.6E-06 39.3 11.0 70 375-444 26-99 (101)
114 3k26_A Polycomb protein EED; W 96.0 0.59 2E-05 43.5 19.2 106 63-192 85-194 (366)
115 1jmx_B Amine dehydrogenase; ox 96.0 0.17 5.9E-06 47.0 15.3 158 62-244 10-179 (349)
116 2qc5_A Streptogramin B lactona 96.0 0.88 3E-05 41.0 23.3 212 16-293 84-299 (300)
117 2v4h_A NF-kappa-B essential mo 96.0 0.079 2.7E-06 39.7 9.7 20 428-447 87-106 (110)
118 2ecf_A Dipeptidyl peptidase IV 95.9 0.21 7.3E-06 52.2 17.4 105 182-294 264-369 (741)
119 4g56_B MGC81050 protein; prote 95.9 0.19 6.6E-06 47.5 15.5 148 113-296 150-303 (357)
120 1q7f_A NHL, brain tumor CG1071 95.9 0.93 3.2E-05 40.8 29.7 196 56-293 80-279 (286)
121 2qc5_A Streptogramin B lactona 95.9 0.95 3.3E-05 40.7 24.3 214 16-293 42-259 (300)
122 2ynn_A Coatomer subunit beta'; 95.8 1.1 3.6E-05 41.0 23.3 189 62-296 66-261 (304)
123 1sq9_A Antiviral protein SKI8; 95.8 0.22 7.4E-06 47.4 15.6 117 113-243 197-325 (397)
124 3c5m_A Oligogalacturonate lyas 95.8 0.85 2.9E-05 43.1 19.6 151 129-298 167-333 (396)
125 3zwl_B Eukaryotic translation 95.8 0.65 2.2E-05 43.1 18.5 196 62-296 43-251 (369)
126 3u4y_A Uncharacterized protein 95.8 1.2 4E-05 41.0 22.9 224 16-297 21-255 (331)
127 3c5m_A Oligogalacturonate lyas 95.7 0.34 1.2E-05 45.9 16.6 202 78-298 167-388 (396)
128 2bkl_A Prolyl endopeptidase; m 95.7 1.1 3.9E-05 46.5 21.7 150 78-246 201-357 (695)
129 2aq5_A Coronin-1A; WD40 repeat 95.7 1.5 5.1E-05 41.8 23.6 201 62-296 93-301 (402)
130 1kv9_A Type II quinohemoprotei 95.7 2.4 8.1E-05 43.9 26.2 124 56-196 60-195 (668)
131 2dfs_A Myosin-5A; myosin-V, in 95.7 0.068 2.3E-06 58.3 12.3 16 429-444 1028-1043(1080)
132 4g56_B MGC81050 protein; prote 95.7 0.23 7.8E-06 47.0 14.9 202 62-295 53-259 (357)
133 2v71_A Nuclear distribution pr 95.7 0.27 9.4E-06 41.3 13.1 30 392-421 94-123 (189)
134 1w6s_A Methanol dehydrogenase 95.6 2.3 7.8E-05 43.4 23.4 125 56-196 56-199 (599)
135 1r5m_A SIR4-interacting protei 95.6 1.6 5.4E-05 41.4 24.8 191 62-294 160-361 (425)
136 3pe7_A Oligogalacturonate lyas 95.6 1.5 5.3E-05 41.2 21.5 210 78-297 167-387 (388)
137 2aq5_A Coronin-1A; WD40 repeat 95.6 1.1 3.6E-05 42.9 19.4 152 64-242 145-301 (402)
138 2hes_X YDR267CP; beta-propelle 95.6 1.5 5E-05 40.6 21.8 195 62-293 118-327 (330)
139 2pm9_A Protein WEB1, protein t 95.6 0.66 2.3E-05 44.2 17.9 197 63-296 126-339 (416)
140 4gqb_B Methylosome protein 50; 95.5 0.38 1.3E-05 45.3 15.7 147 113-295 138-290 (344)
141 2pm9_A Protein WEB1, protein t 95.5 1.7 5.8E-05 41.2 21.0 200 62-295 78-295 (416)
142 1nir_A Nitrite reductase; hemo 95.5 0.49 1.7E-05 47.7 17.3 201 79-298 302-518 (543)
143 2dfs_A Myosin-5A; myosin-V, in 95.5 0.058 2E-06 58.8 10.9 11 437-447 1029-1039(1080)
144 1pby_B Quinohemoprotein amine 95.5 1.5 5E-05 40.1 25.4 143 16-193 12-166 (337)
145 3g4e_A Regucalcin; six bladed 95.5 0.86 3E-05 41.6 17.7 195 62-298 24-233 (297)
146 3u59_A Tropomyosin beta chain; 95.5 0.18 6.2E-06 38.1 10.5 69 375-443 26-98 (101)
147 2v66_B Nuclear distribution pr 95.4 0.48 1.6E-05 36.0 12.4 83 371-453 16-106 (111)
148 2pbi_B Guanine nucleotide-bind 95.4 1.8 6E-05 40.6 20.7 166 80-281 177-348 (354)
149 2ad6_A Methanol dehydrogenase 95.4 1.5 5.1E-05 44.5 20.5 112 16-145 74-193 (571)
150 3mkq_A Coatomer beta'-subunit; 95.4 1.7 5.8E-05 45.7 21.8 149 62-243 108-262 (814)
151 1rwi_B Serine/threonine-protei 95.3 1.4 4.8E-05 39.1 19.4 193 56-295 27-223 (270)
152 2fxo_A Myosin heavy chain, car 95.3 0.46 1.6E-05 37.6 13.0 69 355-423 17-85 (129)
153 3iz6_a 40S ribosomal protein R 95.3 2 6.8E-05 40.7 24.8 195 63-294 170-375 (380)
154 1qks_A Cytochrome CD1 nitrite 95.3 1.5 5.2E-05 44.3 20.2 205 62-295 255-478 (567)
155 2dg1_A DRP35, lactonase; beta 95.3 1.5 5.1E-05 40.4 19.0 202 62-294 55-263 (333)
156 1yiq_A Quinohemoprotein alcoho 95.3 3.3 0.00011 43.0 27.6 125 57-196 65-200 (689)
157 1q7f_A NHL, brain tumor CG1071 95.3 1.6 5.4E-05 39.2 24.8 195 62-294 40-238 (286)
158 3frx_A Guanine nucleotide-bind 95.2 1.9 6.5E-05 39.6 22.0 189 62-293 118-316 (319)
159 1vyh_C Platelet-activating fac 95.2 1.8 6.2E-05 41.5 19.7 147 62-244 119-269 (410)
160 4e54_B DNA damage-binding prot 95.2 0.49 1.7E-05 45.9 15.6 149 62-242 176-329 (435)
161 3scy_A Hypothetical bacterial 95.1 2.1 7.2E-05 39.9 24.4 114 165-297 221-342 (361)
162 3iz6_a 40S ribosomal protein R 95.1 2.3 7.8E-05 40.2 21.9 154 115-295 171-330 (380)
163 3azo_A Aminopeptidase; POP fam 95.1 1.2 4.2E-05 45.6 19.4 150 78-247 216-376 (662)
164 3g4e_A Regucalcin; six bladed 95.1 1.9 6.5E-05 39.2 20.1 187 16-245 36-234 (297)
165 3i2n_A WD repeat-containing pr 95.1 1.1 3.7E-05 41.5 17.3 219 16-295 45-292 (357)
166 2bkl_A Prolyl endopeptidase; m 95.1 2 6.8E-05 44.6 20.9 240 16-293 95-350 (695)
167 3sfz_A APAF-1, apoptotic pepti 95.1 0.32 1.1E-05 54.3 15.7 194 62-297 1014-1210(1249)
168 3na7_A HP0958; flagellar bioge 95.0 0.29 1E-05 44.0 12.5 39 379-417 97-135 (256)
169 1yr2_A Prolyl oligopeptidase; 95.0 2.4 8.1E-05 44.4 21.3 170 62-247 173-359 (741)
170 3iuj_A Prolyl endopeptidase; h 95.0 3.4 0.00012 42.9 22.2 192 16-246 156-365 (693)
171 3i2n_A WD repeat-containing pr 95.0 1.3 4.5E-05 40.9 17.5 106 62-190 128-243 (357)
172 3azo_A Aminopeptidase; POP fam 95.0 1.4 4.8E-05 45.2 19.2 193 78-297 160-372 (662)
173 3e5z_A Putative gluconolactona 94.9 2 7E-05 38.8 18.8 191 62-295 39-247 (296)
174 2vdu_B TRNA (guanine-N(7)-)-me 94.9 2.9 0.0001 40.5 21.6 160 63-244 210-397 (450)
175 2vdu_B TRNA (guanine-N(7)-)-me 94.9 2.9 9.8E-05 40.5 20.5 66 114-194 210-275 (450)
176 1pjx_A Dfpase, DIISOPROPYLFLUO 94.9 2.1 7.2E-05 38.8 22.6 230 16-295 47-300 (314)
177 1yiq_A Quinohemoprotein alcoho 94.9 4.3 0.00015 42.1 24.5 114 16-145 81-200 (689)
178 3o0z_A RHO-associated protein 94.8 0.38 1.3E-05 39.4 11.1 24 383-406 59-82 (168)
179 3sfz_A APAF-1, apoptotic pepti 94.8 2.6 8.8E-05 46.9 22.0 190 62-294 668-871 (1249)
180 2ecf_A Dipeptidyl peptidase IV 94.8 3.5 0.00012 42.8 21.9 193 79-295 263-460 (741)
181 1yfq_A Cell cycle arrest prote 94.7 2.5 8.6E-05 38.7 21.9 197 62-296 67-284 (342)
182 1erj_A Transcriptional repress 94.7 3 0.0001 39.6 20.1 198 62-295 134-342 (393)
183 4ggc_A P55CDC, cell division c 94.7 2.4 8.3E-05 38.3 19.6 92 181-293 221-314 (318)
184 1yr2_A Prolyl oligopeptidase; 94.6 2.9 9.9E-05 43.8 20.7 151 78-246 242-401 (741)
185 1erj_A Transcriptional repress 94.5 3.3 0.00011 39.3 20.0 152 113-294 134-287 (393)
186 3f3f_A Nucleoporin SEH1; struc 94.5 2.7 9.3E-05 38.2 25.4 30 262-295 309-338 (351)
187 4a11_B DNA excision repair pro 94.5 3.2 0.00011 39.0 21.0 200 62-296 55-278 (408)
188 1qks_A Cytochrome CD1 nitrite 94.5 4.7 0.00016 40.8 21.0 200 79-297 320-541 (567)
189 3hnw_A Uncharacterized protein 94.4 0.16 5.4E-06 40.7 7.9 49 375-423 71-119 (138)
190 3q8t_A Beclin-1; autophagy, AT 94.4 0.78 2.7E-05 34.1 11.1 42 367-408 13-54 (96)
191 3ju4_A Endo-N-acetylneuraminid 94.3 3.7 0.00013 38.8 19.1 124 46-174 277-406 (670)
192 1pjx_A Dfpase, DIISOPROPYLFLUO 94.2 1.8 6.3E-05 39.2 16.4 154 62-241 127-300 (314)
193 2pm7_B Protein transport prote 94.2 1.1 3.6E-05 40.9 14.6 107 62-191 20-133 (297)
194 3bg1_A Protein SEC13 homolog; 94.1 0.78 2.7E-05 42.3 13.6 112 62-195 24-142 (316)
195 3odt_A Protein DOA1; ubiquitin 94.1 3.2 0.00011 37.3 24.5 150 113-301 154-303 (313)
196 3mmy_A MRNA export factor; mRN 94.0 3.7 0.00013 37.8 18.4 143 63-241 54-200 (368)
197 2ynn_A Coatomer subunit beta'; 94.0 2.9 9.8E-05 38.0 17.1 192 62-295 24-218 (304)
198 1pgu_A Actin interacting prote 94.0 5 0.00017 40.2 20.5 151 65-241 175-329 (615)
199 1itv_A MMP9; adaptive molecula 93.9 2.6 8.7E-05 36.0 15.2 155 55-242 9-176 (195)
200 1qhu_A Protein (hemopexin); be 93.9 4 0.00014 39.9 18.3 187 62-293 158-384 (460)
201 1ic2_A Tropomyosin alpha chain 93.9 0.83 2.8E-05 32.8 10.2 26 398-423 25-50 (81)
202 3dm0_A Maltose-binding peripla 93.8 5.8 0.0002 40.9 21.0 188 62-296 441-634 (694)
203 1m1j_B Fibrinogen beta chain; 93.7 0.84 2.9E-05 44.3 12.9 21 428-448 172-192 (464)
204 2xyi_A Probable histone-bindin 93.7 2 6.8E-05 41.5 16.2 101 113-240 243-353 (430)
205 3vl1_A 26S proteasome regulato 93.7 4.9 0.00017 38.1 26.9 105 113-240 258-365 (420)
206 1pex_A Collagenase-3, MMP-13; 93.6 3.3 0.00011 35.7 16.4 157 56-244 27-196 (207)
207 3mmy_A MRNA export factor; mRN 93.5 4.5 0.00015 37.2 23.1 193 62-295 97-305 (368)
208 3cvf_A Homer-3, homer protein 93.5 0.58 2E-05 33.1 8.4 66 374-442 8-73 (79)
209 2efr_A General control protein 93.5 1.2 3.9E-05 36.3 11.3 74 375-448 31-115 (155)
210 3mq9_A Bone marrow stromal ant 93.5 0.77 2.6E-05 45.4 12.8 28 422-449 441-468 (471)
211 3cve_A Homer protein homolog 1 93.4 0.8 2.7E-05 31.7 8.8 32 377-408 5-36 (72)
212 3tnu_A Keratin, type I cytoske 93.4 0.59 2E-05 37.1 9.5 39 384-422 36-74 (131)
213 3oja_A Leucine-rich immune mol 93.4 0.87 3E-05 45.2 13.1 15 181-195 144-158 (487)
214 3hnw_A Uncharacterized protein 93.3 0.25 8.5E-06 39.6 7.2 50 374-423 77-126 (138)
215 2eqb_B RAB guanine nucleotide 93.3 1.3 4.5E-05 32.5 10.3 31 353-383 7-37 (97)
216 3dr2_A Exported gluconolactona 93.3 4.6 0.00016 36.7 20.6 165 62-247 96-274 (305)
217 3tnu_B Keratin, type II cytosk 93.3 0.64 2.2E-05 36.8 9.5 36 386-421 36-71 (129)
218 3sjl_D Methylamine dehydrogena 93.3 5.9 0.0002 37.8 20.2 72 215-297 291-366 (386)
219 3o0z_A RHO-associated protein 93.2 1.7 5.8E-05 35.5 12.0 6 436-441 148-153 (168)
220 3ol1_A Vimentin; structural ge 93.2 0.57 2E-05 36.4 9.0 16 428-443 87-102 (119)
221 1yfq_A Cell cycle arrest prote 93.2 4 0.00014 37.3 16.9 187 62-294 22-225 (342)
222 1flg_A Protein (quinoprotein e 93.2 7.3 0.00025 39.5 19.8 109 16-145 79-201 (582)
223 3k26_A Polycomb protein EED; W 93.1 5.2 0.00018 36.8 21.9 66 62-141 127-194 (366)
224 3vkg_A Dynein heavy chain, cyt 93.1 0.58 2E-05 56.4 12.8 15 18-32 1252-1266(3245)
225 1w6s_A Methanol dehydrogenase 93.1 8.2 0.00028 39.2 20.1 110 16-146 74-200 (599)
226 2xyi_A Probable histone-bindin 93.1 1.4 4.7E-05 42.7 13.9 107 165-294 243-353 (430)
227 4gkw_A Spindle assembly abnorm 93.0 1.4 4.9E-05 33.7 10.5 37 379-415 46-82 (167)
228 2k48_A Nucleoprotein; viral pr 92.9 0.64 2.2E-05 34.2 8.1 31 387-417 36-66 (107)
229 2mad_H Methylamine dehydrogena 92.9 6.5 0.00022 37.2 26.8 71 215-297 278-353 (373)
230 3vkg_A Dynein heavy chain, cyt 92.9 0.45 1.5E-05 57.3 11.3 11 83-93 1253-1263(3245)
231 2i1j_A Moesin; FERM, coiled-co 92.8 0.1 3.4E-06 52.9 5.3 9 232-240 224-232 (575)
232 3jsv_C NF-kappa-B essential mo 92.8 0.45 1.6E-05 34.6 7.1 12 379-390 9-20 (94)
233 3odt_A Protein DOA1; ubiquitin 92.7 5.3 0.00018 35.8 20.4 186 62-297 70-258 (313)
234 1pby_B Quinohemoprotein amine 92.7 1.4 4.7E-05 40.4 12.8 92 131-243 220-313 (337)
235 2eqb_B RAB guanine nucleotide 92.7 2.2 7.6E-05 31.3 11.5 50 373-422 6-55 (97)
236 2v4h_A NF-kappa-B essential mo 92.5 1.3 4.5E-05 33.1 9.4 15 434-448 86-100 (110)
237 3nmd_A CGMP dependent protein 92.5 0.69 2.4E-05 31.9 7.3 33 418-450 34-66 (72)
238 1qhu_A Protein (hemopexin); be 92.4 1.4 4.7E-05 43.2 12.5 50 16-90 168-217 (460)
239 1x79_B RAB GTPase binding effe 92.4 2.3 7.8E-05 32.3 10.8 50 398-447 43-93 (112)
240 4ggc_A P55CDC, cell division c 92.3 6.1 0.00021 35.5 22.6 136 16-192 46-183 (318)
241 3ott_A Two-component system se 92.3 12 0.00042 39.0 22.1 180 16-247 83-267 (758)
242 1flg_A Protein (quinoprotein e 92.3 11 0.00036 38.3 25.7 124 57-196 63-201 (582)
243 3gre_A Serine/threonine-protei 92.2 8.4 0.00029 36.7 18.5 109 113-242 181-294 (437)
244 2oiz_A Aromatic amine dehydrog 92.1 7.9 0.00027 36.3 22.5 66 215-295 265-335 (361)
245 3no2_A Uncharacterized protein 92.0 6.6 0.00023 35.3 20.1 184 62-295 4-196 (276)
246 2xbg_A YCF48-like protein; pho 92.0 7.6 0.00026 35.9 20.7 153 61-248 131-287 (327)
247 2jee_A YIIU; FTSZ, septum, coi 92.0 0.97 3.3E-05 32.0 7.8 6 379-384 13-18 (81)
248 3tul_A Cell invasion protein S 92.0 2.7 9.1E-05 33.1 10.9 98 353-450 22-126 (158)
249 3ghg_A Fibrinogen alpha chain; 91.8 0.96 3.3E-05 43.7 10.1 11 353-363 66-76 (562)
250 1wt6_A Myotonin-protein kinase 91.7 0.72 2.5E-05 32.4 6.8 27 393-419 31-57 (81)
251 3c7x_A Matrix metalloproteinas 91.7 3.7 0.00013 35.0 13.2 155 56-242 9-177 (196)
252 1kv9_A Type II quinohemoprotei 91.5 14 0.00048 38.0 23.9 113 16-145 77-195 (668)
253 2xzm_R RACK1; ribosome, transl 91.5 8.5 0.00029 35.5 20.6 21 164-189 223-243 (343)
254 2no2_A HIP-I, huntingtin-inter 91.4 2 6.9E-05 32.5 9.7 12 386-397 29-40 (107)
255 4fi5_A Nucleoprotein; structur 91.4 1.3 4.4E-05 33.2 8.2 59 387-447 23-85 (113)
256 2ymu_A WD-40 repeat protein; u 91.3 12 0.00043 37.0 19.8 135 113-282 437-572 (577)
257 1pgu_A Actin interacting prote 91.2 13 0.00044 37.1 21.3 144 114-293 456-613 (615)
258 4aow_A Guanine nucleotide-bind 91.2 8.4 0.00029 34.9 22.7 187 62-295 97-287 (340)
259 3iuj_A Prolyl endopeptidase; h 91.2 15 0.00051 37.9 19.8 168 62-247 139-324 (693)
260 2ghs_A AGR_C_1268P; regucalcin 91.1 9.2 0.00031 35.1 22.5 135 16-189 72-209 (326)
261 2ghs_A AGR_C_1268P; regucalcin 91.0 9.5 0.00032 35.1 21.6 147 62-239 60-209 (326)
262 1xfd_A DIP, dipeptidyl aminope 91.0 15 0.00051 37.8 19.7 77 62-146 71-150 (723)
263 1d7m_A Cortexillin I; coiled-c 90.9 3.2 0.00011 29.5 10.7 36 362-397 8-43 (101)
264 3c75_H MADH, methylamine dehyd 90.9 12 0.00042 36.1 18.9 106 16-143 100-213 (426)
265 2dg1_A DRP35, lactonase; beta 90.8 9.5 0.00033 34.7 22.7 195 16-246 67-269 (333)
266 2efr_A General control protein 90.8 5.7 0.0002 32.2 12.9 67 361-427 45-111 (155)
267 3lrv_A PRE-mRNA-splicing facto 90.5 10 0.00036 34.8 25.4 108 113-242 138-246 (343)
268 4h22_A Leucine-rich repeat fli 90.5 1.7 5.8E-05 32.2 8.1 56 373-428 31-86 (103)
269 1su3_A Interstitial collagenas 90.4 8.2 0.00028 37.6 15.8 157 56-245 266-437 (450)
270 2ic6_A Nucleocapsid protein; h 90.3 2.3 7.8E-05 29.8 8.2 60 386-447 5-68 (78)
271 3bas_A Myosin heavy chain, str 90.2 4 0.00014 29.8 10.1 24 429-452 61-84 (89)
272 3iv1_A Tumor susceptibility ge 89.9 1.8 6.2E-05 30.4 7.5 24 405-428 44-67 (78)
273 1k32_A Tricorn protease; prote 89.7 26 0.00089 38.1 22.2 75 62-145 389-467 (1045)
274 2ic9_A Nucleocapsid protein; h 89.5 2.5 8.5E-05 30.8 8.1 32 386-417 5-36 (96)
275 3cvf_A Homer-3, homer protein 89.4 1.5 5E-05 31.0 6.8 26 391-416 11-36 (79)
276 1gen_A Gelatinase A; hydrolase 89.2 10 0.00035 32.8 17.1 156 55-242 33-204 (218)
277 3i00_A HIP-I, huntingtin-inter 89.2 0.96 3.3E-05 35.0 6.3 31 387-417 48-78 (120)
278 3ol1_A Vimentin; structural ge 89.1 6.5 0.00022 30.4 11.5 18 410-427 86-103 (119)
279 2xdj_A Uncharacterized protein 88.9 2.1 7.3E-05 30.7 7.5 30 398-427 25-54 (83)
280 3f3f_A Nucleoporin SEH1; struc 88.8 13 0.00044 33.5 20.8 196 62-294 22-249 (351)
281 3ghg_A Fibrinogen alpha chain; 88.7 1.6 5.6E-05 42.2 8.8 29 420-448 127-155 (562)
282 2no2_A HIP-I, huntingtin-inter 88.2 6.9 0.00024 29.6 10.8 12 391-402 27-38 (107)
283 3a7p_A Autophagy protein 16; c 88.2 5.5 0.00019 31.8 10.1 11 387-397 83-93 (152)
284 2hes_X YDR267CP; beta-propelle 87.9 16 0.00054 33.4 21.5 186 62-282 24-222 (330)
285 2ocy_A RAB guanine nucleotide 87.9 9.5 0.00032 30.8 12.1 18 388-405 53-70 (154)
286 3cve_A Homer protein homolog 1 87.9 2.8 9.6E-05 29.0 7.2 24 393-416 7-30 (72)
287 3dr2_A Exported gluconolactona 87.7 14 0.00047 33.4 14.8 105 78-197 168-274 (305)
288 1f5n_A Interferon-induced guan 87.6 3.5 0.00012 41.7 11.1 14 428-441 534-547 (592)
289 3lay_A Zinc resistance-associa 87.6 2.3 8E-05 35.4 8.2 11 430-440 119-129 (175)
290 1x8y_A Lamin A/C; structural p 87.4 3.7 0.00013 29.7 8.2 14 428-441 67-80 (86)
291 1nr0_A Actin interacting prote 87.2 27 0.00092 35.2 24.5 108 165-295 459-568 (611)
292 1npe_A Nidogen, entactin; glyc 87.1 15 0.00052 32.3 22.2 156 56-244 82-242 (267)
293 1xfd_A DIP, dipeptidyl aminope 87.0 14 0.00046 38.1 15.9 108 80-197 38-150 (723)
294 3a7p_A Autophagy protein 16; c 86.9 7.1 0.00024 31.2 10.1 34 373-406 76-109 (152)
295 3ibp_A Chromosome partition pr 86.8 4.2 0.00014 36.4 9.7 31 419-449 71-101 (302)
296 2e7s_A RAB guanine nucleotide 86.8 2.1 7.2E-05 33.6 6.9 8 413-420 73-80 (135)
297 3o4h_A Acylamino-acid-releasin 86.7 27 0.00093 34.8 18.2 138 79-244 90-231 (582)
298 2lw1_A ABC transporter ATP-bin 86.5 3.2 0.00011 30.2 7.6 15 385-399 28-42 (89)
299 4emc_A Monopolin complex subun 86.5 2.6 9E-05 34.9 7.7 46 378-423 12-57 (190)
300 3k6s_A Integrin alpha-X; cell 86.4 17 0.0006 39.7 16.5 191 104-297 334-545 (1095)
301 3ba0_A Macrophage metalloelast 86.4 12 0.00041 35.3 13.6 158 56-245 184-355 (365)
302 3lrv_A PRE-mRNA-splicing facto 86.1 20 0.0007 32.8 20.5 193 62-296 47-246 (343)
303 3no2_A Uncharacterized protein 86.1 18 0.00063 32.3 23.7 175 16-245 16-202 (276)
304 3q8t_A Beclin-1; autophagy, AT 86.0 8.6 0.00029 28.4 11.5 36 378-413 10-45 (96)
305 3vp9_A General transcriptional 85.7 2.7 9.4E-05 30.5 6.5 71 365-441 14-85 (92)
306 1go4_E MAD1 (mitotic arrest de 85.6 2.2 7.4E-05 31.7 6.1 28 375-402 15-42 (100)
307 2oxj_A Hybrid alpha/beta pepti 85.4 1.5 5E-05 24.9 3.9 30 425-454 2-31 (34)
308 3m48_A General control protein 85.4 1.4 4.6E-05 25.0 3.7 30 426-455 2-31 (33)
309 3mq7_A Bone marrow stromal ant 85.2 7.5 0.00026 29.3 8.8 8 363-370 30-37 (121)
310 4dci_A Uncharacterized protein 85.0 8 0.00027 31.1 9.7 26 428-453 81-106 (150)
311 4a5s_A Dipeptidyl peptidase 4 84.9 30 0.001 35.9 17.2 18 78-95 91-108 (740)
312 1n7d_A LDL receptor, low-densi 84.9 28 0.00096 36.0 16.8 149 112-294 463-614 (699)
313 2gop_A Trilobed protease; beta 84.6 23 0.0008 32.2 20.6 144 78-247 84-258 (347)
314 2fp8_A Strictosidine synthase; 84.6 23 0.0008 32.1 18.2 139 79-240 165-313 (322)
315 3c3f_A Alpha/beta peptide with 84.5 1.6 5.3E-05 24.7 3.7 29 425-453 2-30 (34)
316 1itv_A MMP9; adaptive molecula 84.3 18 0.00061 30.6 16.0 149 108-295 11-175 (195)
317 1jof_A Carboxy-CIS,CIS-muconat 84.3 26 0.00089 32.4 21.5 34 158-196 148-183 (365)
318 2yy0_A C-MYC-binding protein; 84.1 1.9 6.6E-05 27.9 4.7 30 395-424 21-50 (53)
319 1l8d_A DNA double-strand break 84.0 8.6 0.00029 29.2 9.4 17 387-403 25-41 (112)
320 1nr0_A Actin interacting prote 84.0 38 0.0013 34.1 23.3 180 81-295 172-356 (611)
321 3gre_A Serine/threonine-protei 83.8 30 0.001 32.7 22.1 109 62-193 181-295 (437)
322 2zqm_A Prefoldin beta subunit 83.7 8.2 0.00028 29.5 9.3 20 428-447 88-107 (117)
323 3iox_A AGI/II, PA; alpha helix 83.5 18 0.00061 35.0 12.9 71 378-448 33-104 (497)
324 3fvz_A Peptidyl-glycine alpha- 83.2 27 0.00093 31.8 24.7 157 62-239 154-321 (329)
325 1deb_A APC protein, adenomatou 83.0 2.7 9.1E-05 26.3 4.7 42 375-416 6-47 (54)
326 3ibp_A Chromosome partition pr 83.0 7.8 0.00027 34.7 9.6 33 428-460 76-108 (302)
327 2v66_B Nuclear distribution pr 82.9 13 0.00046 28.1 11.0 51 373-423 36-86 (111)
328 2i1j_A Moesin; FERM, coiled-co 82.8 0.65 2.2E-05 47.0 3.1 7 353-359 302-308 (575)
329 3mq9_A Bone marrow stromal ant 82.8 8.8 0.0003 37.6 11.4 20 431-450 443-462 (471)
330 3oja_A Leucine-rich immune mol 82.8 12 0.00041 36.8 12.4 21 428-448 453-473 (487)
331 4h5i_A Guanine nucleotide-exch 82.7 31 0.001 32.1 21.0 150 62-239 187-342 (365)
332 2ece_A 462AA long hypothetical 82.6 37 0.0013 33.0 21.2 178 60-247 93-296 (462)
333 2lw1_A ABC transporter ATP-bin 82.6 5.4 0.00018 29.0 7.3 21 403-423 25-45 (89)
334 1lwu_C Fibrinogen gamma chain; 82.6 1.7 5.9E-05 40.1 5.5 42 381-422 14-55 (323)
335 3qh9_A Liprin-beta-2; coiled-c 82.3 7.2 0.00025 27.3 7.2 16 432-447 55-70 (81)
336 1kd8_A GABH AIV, GCN4 acid bas 82.2 1.9 6.4E-05 24.8 3.5 27 426-452 3-29 (36)
337 2p9w_A MAL S 1 allergenic prot 82.1 32 0.0011 31.8 16.7 159 62-239 147-322 (334)
338 2bni_A General control protein 82.0 2.3 7.9E-05 24.2 3.7 29 425-453 2-30 (34)
339 1uo4_A General control protein 81.9 2.5 8.7E-05 24.0 3.9 29 426-454 3-31 (34)
340 1kd8_B GABH BLL, GCN4 acid bas 81.8 2.3 7.9E-05 24.5 3.7 27 426-452 3-29 (36)
341 2ece_A 462AA long hypothetical 81.8 38 0.0013 32.9 14.9 132 62-197 148-296 (462)
342 4emc_A Monopolin complex subun 81.7 10 0.00036 31.4 9.2 45 366-410 14-58 (190)
343 1t6f_A Geminin; coiled-coil, c 81.7 3.7 0.00013 23.6 4.6 29 423-451 6-34 (37)
344 4h22_A Leucine-rich repeat fli 81.6 14 0.00047 27.3 9.3 17 431-447 65-81 (103)
345 3iv1_A Tumor susceptibility ge 81.5 6.1 0.00021 27.7 6.7 11 398-408 23-33 (78)
346 3hrp_A Uncharacterized protein 81.5 37 0.0013 32.3 28.7 232 16-292 153-408 (409)
347 2gop_A Trilobed protease; beta 81.2 32 0.0011 31.2 21.5 141 78-246 151-297 (347)
348 1z68_A Fibroblast activation p 81.2 12 0.0004 38.7 12.2 104 16-146 37-146 (719)
349 2ocy_A RAB guanine nucleotide 81.1 20 0.00069 28.9 12.8 20 429-448 120-139 (154)
350 3o4h_A Acylamino-acid-releasin 81.0 46 0.0016 33.0 17.3 115 161-298 117-231 (582)
351 3c3g_A Alpha/beta peptide with 80.8 3.1 0.00011 23.4 3.9 28 426-453 2-29 (33)
352 1uix_A RHO-associated kinase; 80.7 10 0.00034 26.1 7.4 15 390-404 15-29 (71)
353 2fp8_A Strictosidine synthase; 80.7 33 0.0011 31.1 22.3 206 56-295 83-314 (322)
354 1t3j_A Mitofusin 1; coiled coi 80.4 8.5 0.00029 28.2 7.4 41 410-450 50-90 (96)
355 2b9c_A Striated-muscle alpha t 80.4 15 0.00053 29.4 9.8 43 385-427 72-114 (147)
356 1deq_A Fibrinogen (alpha chain 80.3 16 0.00054 34.0 10.9 13 351-363 67-79 (390)
357 3i00_A HIP-I, huntingtin-inter 80.3 15 0.00053 28.2 9.3 12 406-417 46-57 (120)
358 2xdj_A Uncharacterized protein 80.2 6.7 0.00023 28.0 6.8 20 397-416 31-50 (83)
359 1go4_E MAD1 (mitotic arrest de 80.1 3.6 0.00012 30.5 5.4 26 390-415 16-41 (100)
360 1k32_A Tricorn protease; prote 80.0 72 0.0024 34.6 24.5 197 16-247 34-242 (1045)
361 4etp_A Kinesin-like protein KA 79.7 5.5 0.00019 38.2 8.2 39 389-427 6-44 (403)
362 2p4o_A Hypothetical protein; p 79.4 35 0.0012 30.7 17.8 141 17-194 97-245 (306)
363 2zqm_A Prefoldin beta subunit 79.3 11 0.00037 28.8 8.5 23 428-450 81-103 (117)
364 2hy6_A General control protein 79.3 3.2 0.00011 23.5 3.7 29 425-453 2-30 (34)
365 3oyo_A Hemopexin fold protein 79.2 31 0.0011 29.9 14.3 62 164-239 126-197 (225)
366 1m1j_C Fibrinogen gamma chain; 79.2 17 0.0006 34.6 11.4 9 356-364 36-44 (409)
367 1x8y_A Lamin A/C; structural p 79.1 13 0.00044 26.8 8.1 44 402-448 30-73 (86)
368 3ba0_A Macrophage metalloelast 78.9 29 0.00099 32.6 13.0 152 108-296 185-352 (365)
369 2w83_C C-JUN-amino-terminal ki 78.9 6.2 0.00021 27.3 5.9 24 375-398 33-56 (77)
370 3c7x_A Matrix metalloproteinas 78.8 19 0.00064 30.5 10.6 150 109-295 11-176 (196)
371 3hrp_A Uncharacterized protein 78.5 47 0.0016 31.6 23.3 199 62-295 141-355 (409)
372 4dk0_A Putative MACA; alpha-ha 78.5 6.1 0.00021 37.3 8.3 12 436-447 134-145 (369)
373 2akf_A Coronin-1A; coiled coil 78.4 5 0.00017 21.8 4.2 6 406-411 19-24 (32)
374 2hz6_A Endoplasmic reticulum t 78.3 0.57 1.9E-05 44.6 0.9 105 61-195 8-118 (369)
375 3ghg_B Fibrinogen beta chain; 78.0 14 0.00047 35.5 10.2 20 428-447 167-186 (461)
376 1gk4_A Vimentin; intermediate 77.9 16 0.00056 26.1 9.4 10 429-438 66-75 (84)
377 1gmj_A ATPase inhibitor; coile 77.6 16 0.00055 26.0 7.8 26 418-443 52-77 (84)
378 2xv5_A Lamin-A/C; structural p 77.5 8.3 0.00028 26.9 6.4 25 417-441 33-57 (74)
379 3iox_A AGI/II, PA; alpha helix 77.1 29 0.00098 33.6 12.0 52 398-449 46-98 (497)
380 3fpp_A Macrolide-specific effl 77.0 9.5 0.00032 35.5 9.0 18 431-448 128-145 (341)
381 2wq1_A General control protein 76.6 5.1 0.00017 22.6 4.0 28 426-453 2-29 (33)
382 2e7s_A RAB guanine nucleotide 76.5 7.5 0.00026 30.5 6.5 36 371-406 45-80 (135)
383 3v65_B Low-density lipoprotein 76.3 52 0.0018 30.9 26.3 189 62-294 127-318 (386)
384 3b7f_A Glycosyl hydrolase, BNR 76.0 52 0.0018 30.8 20.3 198 81-302 33-270 (394)
385 2oqq_A Transcription factor HY 75.7 11 0.00036 22.7 5.7 24 397-420 14-37 (42)
386 3m9b_A Proteasome-associated A 75.7 3.3 0.00011 36.3 4.8 22 429-450 73-94 (251)
387 1pex_A Collagenase-3, MMP-13; 75.7 37 0.0013 28.9 16.0 109 108-241 28-146 (207)
388 4gkw_A Spindle assembly abnorm 75.1 26 0.00088 26.9 11.8 33 373-405 47-79 (167)
389 3hxj_A Pyrrolo-quinoline quino 75.1 46 0.0016 29.8 18.1 138 61-244 106-249 (330)
390 2xe4_A Oligopeptidase B; hydro 75.1 83 0.0028 32.7 16.9 141 79-238 247-398 (751)
391 3c75_H MADH, methylamine dehyd 75.1 61 0.0021 31.1 17.5 121 62-194 84-213 (426)
392 3frx_A Guanine nucleotide-bind 75.0 47 0.0016 29.9 22.8 145 62-242 76-229 (319)
393 1z68_A Fibroblast activation p 74.8 78 0.0027 32.3 17.7 152 79-241 224-394 (719)
394 1fxk_A Prefoldin; archaeal pro 74.7 24 0.00081 26.3 9.5 23 375-397 11-33 (107)
395 3oyo_A Hemopexin fold protein 74.6 42 0.0014 29.1 13.8 107 61-190 69-198 (225)
396 4hvt_A Ritya.17583.B, post-pro 74.5 84 0.0029 32.5 18.2 104 128-244 267-385 (711)
397 4dci_A Uncharacterized protein 74.4 27 0.00093 28.0 9.5 14 429-442 89-102 (150)
398 2xzm_R RACK1; ribosome, transl 74.3 51 0.0018 30.0 20.9 145 113-293 87-243 (343)
399 2ymu_A WD-40 repeat protein; u 73.7 71 0.0024 31.3 22.7 181 62-293 314-497 (577)
400 3swk_A Vimentin; cytoskeleton, 73.7 22 0.00076 25.5 9.3 8 377-384 5-12 (86)
401 2p4o_A Hypothetical protein; p 73.0 53 0.0018 29.5 22.8 199 52-293 31-241 (306)
402 2oto_A M protein; helical coil 72.6 36 0.0012 27.5 13.1 23 377-399 55-77 (155)
403 1hxn_A Hemopexin, HPX; heme, b 72.0 28 0.00097 30.0 10.0 142 61-240 27-197 (219)
404 2xbg_A YCF48-like protein; pho 71.8 60 0.002 29.6 24.6 200 55-301 82-286 (327)
405 1n7d_A LDL receptor, low-densi 71.6 82 0.0028 32.5 15.3 153 61-244 463-618 (699)
406 1yke_B RNA polymerase II holoe 70.9 17 0.00059 29.3 7.7 14 372-385 71-84 (151)
407 1m1j_C Fibrinogen gamma chain; 70.8 32 0.0011 32.8 10.8 11 353-363 40-50 (409)
408 3qh9_A Liprin-beta-2; coiled-c 70.8 24 0.00083 24.7 9.4 46 376-421 23-68 (81)
409 3lay_A Zinc resistance-associa 70.7 30 0.001 28.6 9.3 18 388-405 87-104 (175)
410 1fxk_A Prefoldin; archaeal pro 70.4 31 0.001 25.7 9.8 14 433-446 81-94 (107)
411 2lw9_A Unconventionnal myosin- 70.3 8.8 0.0003 23.8 4.4 20 424-443 6-25 (51)
412 3a2a_A Voltage-gated hydrogen 70.0 9.1 0.00031 24.4 4.5 17 440-456 34-50 (58)
413 4a5s_A Dipeptidyl peptidase 4 70.0 1E+02 0.0036 31.7 16.9 105 80-196 37-147 (740)
414 2aze_A Transcription factor DP 69.9 13 0.00046 29.8 6.7 31 398-428 10-40 (155)
415 3u06_A Protein claret segregat 69.6 14 0.00048 35.4 8.2 35 390-424 7-41 (412)
416 1ykh_B RNA polymerase II holoe 69.6 23 0.00079 27.8 8.1 14 372-385 71-84 (132)
417 3m9b_A Proteasome-associated A 69.5 5.8 0.0002 34.8 4.9 12 392-403 60-71 (251)
418 1ik9_A DNA repair protein XRCC 69.0 32 0.0011 29.5 9.5 10 418-427 186-195 (213)
419 1gk4_A Vimentin; intermediate 68.9 29 0.00098 24.8 9.0 23 429-451 52-74 (84)
420 3b7f_A Glycosyl hydrolase, BNR 68.7 77 0.0026 29.6 21.6 194 16-248 32-270 (394)
421 3dw8_B Serine/threonine-protei 68.2 79 0.0027 29.6 17.4 32 160-196 348-379 (447)
422 4fi5_A Nucleoprotein; structur 67.9 30 0.001 25.9 7.7 11 406-416 75-85 (113)
423 2r2v_A GCN4 leucine zipper; co 67.9 9.1 0.00031 21.8 3.7 27 426-452 3-29 (34)
424 1jof_A Carboxy-CIS,CIS-muconat 67.6 76 0.0026 29.2 18.1 69 66-144 5-75 (365)
425 3mov_A Lamin-B1; LMNB1, B-type 67.5 34 0.0012 25.1 9.7 22 380-401 13-34 (95)
426 1hjb_A Ccaat/enhancer binding 66.8 17 0.00058 26.2 6.1 33 428-460 47-79 (87)
427 3qne_A Seryl-tRNA synthetase, 66.6 12 0.00042 36.6 7.1 18 430-447 84-101 (485)
428 3v65_B Low-density lipoprotein 66.5 86 0.0029 29.4 22.0 147 61-240 169-318 (386)
429 1wle_A Seryl-tRNA synthetase; 66.4 66 0.0023 31.6 12.4 16 432-447 131-146 (501)
430 3mov_A Lamin-B1; LMNB1, B-type 66.3 17 0.00057 26.7 6.2 18 376-393 16-33 (95)
431 3dw8_B Serine/threonine-protei 66.2 87 0.003 29.3 17.8 27 215-246 353-379 (447)
432 1gd2_E Transcription factor PA 65.7 16 0.00055 25.1 5.6 20 429-448 48-67 (70)
433 2dq0_A Seryl-tRNA synthetase; 64.6 21 0.00072 34.7 8.4 15 433-447 85-99 (455)
434 3he5_B Synzip2; heterodimeric 64.5 15 0.00052 21.9 4.5 7 437-443 37-43 (52)
435 1ck7_A Protein (gelatinase A); 64.4 44 0.0015 34.0 10.9 154 56-241 447-616 (631)
436 3vp9_A General transcriptional 64.3 29 0.001 25.2 6.9 22 377-398 12-33 (92)
437 3s4r_A Vimentin; alpha-helix, 64.0 39 0.0013 24.6 9.5 16 383-398 27-42 (93)
438 2yy0_A C-MYC-binding protein; 63.8 13 0.00045 23.9 4.6 15 432-446 27-41 (53)
439 3t97_C Nuclear pore glycoprote 63.7 24 0.00083 23.7 6.0 34 402-435 14-47 (64)
440 3ajw_A Flagellar FLIJ protein; 63.3 30 0.001 27.5 8.1 78 376-453 9-103 (150)
441 3s4r_A Vimentin; alpha-helix, 63.2 41 0.0014 24.5 8.5 12 430-441 55-66 (93)
442 3hxj_A Pyrrolo-quinoline quino 63.1 83 0.0028 28.0 17.0 137 62-245 147-290 (330)
443 2wt7_B Transcription factor MA 62.8 21 0.00073 25.8 6.0 11 353-363 23-33 (90)
444 3sjl_D Methylamine dehydrogena 62.7 42 0.0014 31.8 10.0 79 56-145 285-369 (386)
445 2xe4_A Oligopeptidase B; hydro 62.2 88 0.003 32.5 13.4 118 62-197 330-465 (751)
446 4b6x_A AVRRPS4, avirulence pro 62.1 35 0.0012 23.7 6.6 23 395-417 57-79 (90)
447 1zxa_A CGMP-dependent protein 61.9 7.1 0.00024 26.5 3.1 40 374-413 13-52 (67)
448 1a93_B MAX protein, coiled coi 61.8 7.6 0.00026 22.3 2.7 30 384-413 5-34 (34)
449 1zxa_A CGMP-dependent protein 61.4 16 0.00055 24.8 4.8 41 412-452 13-53 (67)
450 1vcs_A Vesicle transport throu 61.2 48 0.0016 24.6 9.0 78 382-460 8-102 (102)
451 1ses_A Seryl-tRNA synthetase; 61.1 22 0.00076 34.2 7.8 71 350-426 27-97 (421)
452 3haj_A Human pacsin2 F-BAR; pa 61.1 58 0.002 31.9 11.1 101 347-447 132-240 (486)
453 2wt7_A Proto-oncogene protein 61.1 25 0.00084 23.5 5.8 44 382-425 19-62 (63)
454 4h5i_A Guanine nucleotide-exch 60.6 1E+02 0.0035 28.3 26.5 233 17-295 108-344 (365)
455 1fzc_C Fibrin; blood coagulati 60.6 11 0.00037 34.7 5.2 47 376-422 1-47 (319)
456 3v64_C Agrin; beta propeller, 60.5 1E+02 0.0036 28.3 28.1 237 15-313 53-294 (349)
457 1wle_A Seryl-tRNA synthetase; 60.4 25 0.00085 34.7 8.1 70 350-419 69-149 (501)
458 1fmh_A General control protein 60.3 18 0.00062 19.5 4.1 29 394-422 2-30 (33)
459 3vu4_A KMHSV2; beta-propeller 60.1 1E+02 0.0035 28.1 19.5 179 62-296 30-229 (355)
460 3m91_A Proteasome-associated A 60.0 31 0.001 22.0 5.7 42 385-426 8-49 (51)
461 2dq0_A Seryl-tRNA synthetase; 59.9 28 0.00096 33.8 8.4 70 350-419 30-102 (455)
462 1gen_A Gelatinase A; hydrolase 59.5 84 0.0029 26.9 13.3 113 108-242 35-155 (218)
463 3ghg_B Fibrinogen beta chain; 59.3 76 0.0026 30.5 10.8 101 353-453 83-185 (461)
464 1gk6_A Vimentin; intermediate 59.1 35 0.0012 22.4 6.6 51 381-441 2-52 (59)
465 3v64_C Agrin; beta propeller, 58.8 1.1E+02 0.0038 28.1 22.7 196 15-256 95-291 (349)
466 3ghg_C Fibrinogen gamma chain; 58.4 91 0.0031 29.6 11.2 95 347-441 34-132 (411)
467 3kqg_A Langerin, C-type lectin 58.1 8.6 0.00029 32.0 3.9 45 411-455 3-47 (182)
468 1dh3_A Transcription factor CR 57.7 27 0.00091 22.6 5.3 38 420-457 18-55 (55)
469 4dk0_A Putative MACA; alpha-ha 57.4 16 0.00055 34.3 6.2 87 361-447 66-152 (369)
470 2zdi_C Prefoldin subunit alpha 57.0 73 0.0025 25.4 10.8 92 369-460 6-149 (151)
471 2oqq_A Transcription factor HY 56.9 19 0.00066 21.6 4.0 40 371-410 2-41 (42)
472 1npe_A Nidogen, entactin; glyc 56.8 97 0.0033 26.8 24.8 198 56-296 39-240 (267)
473 2aze_A Transcription factor DP 56.7 42 0.0014 27.0 7.3 52 409-460 4-55 (155)
474 2j5u_A MREC protein; bacterial 56.1 8 0.00027 34.4 3.5 41 400-440 19-59 (255)
475 3gp4_A Transcriptional regulat 56.1 73 0.0025 25.1 9.0 68 374-441 62-129 (142)
476 4dyl_A Tyrosine-protein kinase 55.9 41 0.0014 32.1 8.8 89 360-450 304-392 (406)
477 3m0c_C LDL receptor, low-densi 55.9 2E+02 0.0068 30.1 25.7 224 15-296 404-634 (791)
478 2jo8_A Serine/threonine-protei 55.5 29 0.00099 22.0 4.9 30 416-445 12-42 (51)
479 2dgc_A Protein (GCN4); basic d 55.4 24 0.00082 23.6 4.9 37 420-456 26-62 (63)
480 1cii_A Colicin IA; bacteriocin 55.2 1.3E+02 0.0044 28.7 11.3 96 358-453 335-430 (602)
481 3k29_A Putative uncharacterize 55.2 83 0.0028 25.5 12.9 107 347-453 23-146 (169)
482 3v4v_A Integrin alpha-4; cell 55.1 49 0.0017 33.4 9.5 133 156-290 167-309 (597)
483 1xaw_A Occludin; coiled-coil, 54.9 59 0.002 25.6 7.8 115 319-447 20-139 (140)
484 1u2m_A Histone-like protein HL 54.8 2.4 8.3E-05 34.0 -0.1 83 373-456 10-92 (143)
485 3u0c_A Invasin IPAB, 62 kDa an 54.7 73 0.0025 25.6 8.3 70 374-443 70-143 (201)
486 1nkp_B MAX protein, MYC proto- 54.5 28 0.00094 24.7 5.5 67 354-420 15-81 (83)
487 4d9s_A UVB-resistance protein 54.3 83 0.0028 29.8 10.7 153 54-222 182-354 (406)
488 1m1j_A Fibrinogen alpha subuni 54.3 1.4E+02 0.0048 28.5 11.4 91 363-453 56-151 (491)
489 3trt_A Vimentin; cytoskeleton, 54.2 51 0.0018 22.8 7.9 67 354-420 9-76 (77)
490 1lrz_A FEMA, factor essential 54.1 28 0.00094 33.5 7.3 69 398-468 245-316 (426)
491 2b5u_A Colicin E3; high resolu 54.1 74 0.0025 30.7 9.6 76 375-450 294-375 (551)
492 3ljm_A Coil Ser L9C; de novo d 53.9 23 0.0008 18.8 3.8 25 403-427 4-28 (31)
493 3fx0_A NF-kappa-B essential mo 53.7 3.6 0.00012 29.8 0.6 85 360-444 5-96 (96)
494 4hvt_A Ritya.17583.B, post-pro 53.7 1.7E+02 0.0058 30.2 13.5 170 1-205 256-444 (711)
495 3ni0_A Bone marrow stromal ant 53.7 60 0.002 23.4 9.5 61 391-451 23-87 (99)
496 2cly_A ATP synthase B chain, m 53.5 1.1E+02 0.0036 26.2 10.3 86 354-439 80-171 (214)
497 2oiz_A Aromatic amine dehydrog 53.5 1.4E+02 0.0047 27.5 18.5 194 15-242 81-338 (361)
498 3trt_A Vimentin; cytoskeleton, 53.5 53 0.0018 22.7 8.8 62 390-451 6-76 (77)
499 2q6q_A Spindle POLE BODY compo 53.4 48 0.0016 22.2 6.8 57 372-428 3-59 (74)
500 2lf0_A Uncharacterized protein 53.4 13 0.00045 28.0 3.6 61 396-456 6-68 (123)
No 1
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=1.6e-46 Score=359.53 Aligned_cols=277 Identities=18% Similarity=0.241 Sum_probs=246.0
Q ss_pred CEEEcccCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEcccc---CCCCC
Q 012184 1 MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHY---KKSSD 77 (469)
Q Consensus 1 l~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~---~~~~~ 77 (469)
||+|||. .+..++ ++++||+.+++|..++++ |.+|.+|++++++++||++||.. .....
T Consensus 27 i~v~GG~-~~~~~~-~~~~~d~~~~~W~~~~~~----------------p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 88 (308)
T 1zgk_A 27 IYTAGGY-FRQSLS-YLEAYNPSNGTWLRLADL----------------QVPRSGLAGCVVGGLLYAVGGRNNSPDGNTD 88 (308)
T ss_dssp EEEECCB-SSSBCC-CEEEEETTTTEEEECCCC----------------SSCCBSCEEEEETTEEEEECCEEEETTEEEE
T ss_pred EEEEeCc-CCCCcc-eEEEEcCCCCeEeECCCC----------------CcccccceEEEECCEEEEECCCcCCCCCCee
Confidence 6999998 567778 999999999999999776 78999999999999999999984 22335
Q ss_pred cceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCC
Q 012184 78 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD 157 (469)
Q Consensus 78 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~ 157 (469)
.+++++||+.+++|+.++ ++|.+|.+|++++++++||++||..... ..+++++||+.+++|+.++ ++|.+|.+
T Consensus 89 ~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~---~~p~~r~~ 161 (308)
T 1zgk_A 89 SSALDCYNPMTNQWSPCA---PMSVPRNRIGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERDEWHLVA---PMLTRRIG 161 (308)
T ss_dssp CCCEEEEETTTTEEEECC---CCSSCCBTCEEEEETTEEEEECCEETTE-ECCCEEEEETTTTEEEECC---CCSSCCBS
T ss_pred cceEEEECCCCCeEeECC---CCCcCccccEEEEECCEEEEEcCCCCCc-ccccEEEECCCCCeEeECC---CCCccccc
Confidence 678999999999999998 7899999999999999999999987643 5889999999999999986 77899999
Q ss_pred ceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEE
Q 012184 158 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN 237 (469)
Q Consensus 158 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d 237 (469)
|+++++ +++||+|||.+....++++++||+.+++|+.+. ++|.+|..|+++.++++|||+||.+.....+++++||
T Consensus 162 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd 237 (308)
T 1zgk_A 162 VGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMIT---AMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYD 237 (308)
T ss_dssp CEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEE
T ss_pred eEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCC---CCCCccccceEEEECCEEEEEeCCCCCCccceEEEEe
Confidence 999998 778999999987777899999999999999975 7899999999999999999999988777789999999
Q ss_pred CCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC-CCceEEEEECCCCCCCCccccCCCchhhcchh
Q 012184 238 MTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPKIFQSPAAAAAAAS 314 (469)
Q Consensus 238 ~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~ 314 (469)
+.+++|+.++.+ |.+|.+|+++.. ++.|||+||.++. ..+++++||+.+++|..+..+|.++..+.+++
T Consensus 238 ~~~~~W~~~~~~----p~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~ 307 (308)
T 1zgk_A 238 VETETWTFVAPM----KHRRSALGITVH----QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 307 (308)
T ss_dssp TTTTEEEECCCC----SSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE
T ss_pred CCCCcEEECCCC----CCCccceEEEEE----CCEEEEEcCcCCCcccceEEEEcCCCCEEeecCCCCCCcccceeEe
Confidence 999999998754 566788887776 7899999998764 57899999999999999999999888776553
No 2
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=3.1e-46 Score=357.07 Aligned_cols=274 Identities=14% Similarity=0.253 Sum_probs=244.4
Q ss_pred CEEEcccCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcce
Q 012184 1 MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI 80 (469)
Q Consensus 1 l~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~ 80 (469)
||++||... ++ ++++||+.+++|..++++ |.+|.+|++++++++||++||.. ....++
T Consensus 14 l~~~GG~~~---~~-~~~~~d~~~~~W~~~~~~----------------p~~r~~~~~~~~~~~lyv~GG~~--~~~~~~ 71 (306)
T 3ii7_A 14 RIALFGGSQ---PQ-SCRYFNPKDYSWTDIRCP----------------FEKRRDAACVFWDNVVYILGGSQ--LFPIKR 71 (306)
T ss_dssp EEEEECCSS---TT-SEEEEETTTTEEEECCCC----------------SCCCBSCEEEEETTEEEEECCBS--SSBCCE
T ss_pred EEEEeCCCC---Cc-eEEEecCCCCCEecCCCC----------------CcccceeEEEEECCEEEEEeCCC--CCCcce
Confidence 689999755 66 999999999999999876 78999999999999999999987 446788
Q ss_pred EEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceE
Q 012184 81 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSA 160 (469)
Q Consensus 81 ~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~ 160 (469)
+++||+.+++|..++ ++|.+|.+|++++++++||++||.+.....++++++||+.+++|+.+. ++|.+|..|++
T Consensus 72 ~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~ 145 (306)
T 3ii7_A 72 MDCYNVVKDSWYSKL---GPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP---SMLTQRCSHGM 145 (306)
T ss_dssp EEEEETTTTEEEEEE---CCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC---CCSSCCBSCEE
T ss_pred EEEEeCCCCeEEECC---CCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC---CCcCCcceeEE
Confidence 999999999999998 789999999999999999999999755557899999999999999985 78899999999
Q ss_pred EEEcCcEEEEEecCCCCcc----cCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEE
Q 012184 161 ALHANRYLIVFGGCSHSIF----FNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL 236 (469)
Q Consensus 161 ~~~~~~~l~v~GG~~~~~~----~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~ 236 (469)
+.+ +++||+|||...... ++++++||+.+++|+.+. ++|.+|..|+++.++++|||+||.+.....+++++|
T Consensus 146 ~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~y 221 (306)
T 3ii7_A 146 VEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELC---PMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYY 221 (306)
T ss_dssp EEE-TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEE
T ss_pred EEE-CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECC---CccchhhcceEEEECCEEEEEeCCCCCCCCceEEEe
Confidence 998 678999999866544 899999999999999985 789999999999999999999998777678899999
Q ss_pred ECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC-CCceEEEEECCCCCCCCccccCCCchhhcchh
Q 012184 237 NMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPKIFQSPAAAAAAAS 314 (469)
Q Consensus 237 d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~ 314 (469)
|+.+++|+.++.+ |.+|.+|+++.+ ++.|||+||.++. ..+++++||+.+++|..+..+|.++..+.++.
T Consensus 222 d~~~~~W~~~~~~----p~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 292 (306)
T 3ii7_A 222 DIKLNEWKMVSPM----PWKGVTVKCAAV----GSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRAFPVTSCLIC 292 (306)
T ss_dssp ETTTTEEEECCCC----SCCBSCCEEEEE----TTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEECCSCTTCEEE
T ss_pred eCCCCcEEECCCC----CCCccceeEEEE----CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcccccceeEEEE
Confidence 9999999998755 456788887777 7899999998755 67899999999999999999988887776554
No 3
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.3e-45 Score=350.20 Aligned_cols=277 Identities=18% Similarity=0.252 Sum_probs=246.3
Q ss_pred CEEEcc-cCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcc
Q 012184 1 MLLRCS-IRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM 79 (469)
Q Consensus 1 l~~~GG-~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~ 79 (469)
||++|| ...+..++ +++.||+.+++|..++++ |.+|.+|++++++++||++||.... ...+
T Consensus 17 i~~~GG~~~~~~~~~-~~~~~d~~~~~W~~~~~~----------------p~~r~~~~~~~~~~~l~v~GG~~~~-~~~~ 78 (301)
T 2vpj_A 17 LLVVGGFGSQQSPID-VVEKYDPKTQEWSFLPSI----------------TRKRRYVASVSLHDRIYVIGGYDGR-SRLS 78 (301)
T ss_dssp EEEECCEETTTEECC-CEEEEETTTTEEEECCCC----------------SSCCBSCEEEEETTEEEEECCBCSS-CBCC
T ss_pred EEEEeCccCCCccee-EEEEEcCCCCeEEeCCCC----------------ChhhccccEEEECCEEEEEcCCCCC-ccCc
Confidence 699999 66667788 999999999999999876 7789999999999999999998743 3678
Q ss_pred eEEEEECCCCe---EEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCC
Q 012184 80 IVRFIDLETNL---CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY 156 (469)
Q Consensus 80 ~~~~~d~~t~~---W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~ 156 (469)
++++||+.+++ |+.++ ++|.+|.+|++++++++||++||..... ..+++++||+.+++|+.++ ++|.+|.
T Consensus 79 ~~~~~d~~~~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~---~~p~~r~ 151 (301)
T 2vpj_A 79 SVECLDYTADEDGVWYSVA---PMNVRRGLAGATTLGDMIYVSGGFDGSR-RHTSMERYDPNIDQWSMLG---DMQTARE 151 (301)
T ss_dssp CEEEEETTCCTTCCCEEEC---CCSSCCBSCEEEEETTEEEEECCBCSSC-BCCEEEEEETTTTEEEEEE---ECSSCCB
T ss_pred eEEEEECCCCCCCeeEECC---CCCCCccceeEEEECCEEEEEcccCCCc-ccceEEEEcCCCCeEEECC---CCCCCcc
Confidence 89999999999 99997 8899999999999999999999998654 5889999999999999987 6789999
Q ss_pred CceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEE
Q 012184 157 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL 236 (469)
Q Consensus 157 ~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~ 236 (469)
+|+++++ +++||++||.+....++++++||+.+++|+.+. ++|.+|..|+++.++++|||+||.+.....+++++|
T Consensus 152 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~y 227 (301)
T 2vpj_A 152 GAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT---PMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAY 227 (301)
T ss_dssp SCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEE
T ss_pred cceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCcEEeCC---CCCcccccceEEEECCEEEEEeCCCCCcccceEEEE
Confidence 9999998 678999999887778899999999999999985 789999999999999999999998877668899999
Q ss_pred ECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC-CCceEEEEECCCCCCCCccccCCCchhhcchh
Q 012184 237 NMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPKIFQSPAAAAAAAS 314 (469)
Q Consensus 237 d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~ 314 (469)
|+.+++|+.++.+ |.+|.+|+++.. ++.||++||.++. ..+++++||+.+++|..+..+|.++..+.++.
T Consensus 228 d~~~~~W~~~~~~----p~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~ 298 (301)
T 2vpj_A 228 NIRTDSWTTVTSM----TTPRCYVGATVL----RGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCV 298 (301)
T ss_dssp ETTTTEEEEECCC----SSCCBSCEEEEE----TTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEEEEEESCEEEE
T ss_pred eCCCCcEEECCCC----CCcccceeEEEE----CCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCCcccccceEEE
Confidence 9999999998755 566788887776 7899999998764 45889999999999999999988887776654
No 4
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=4.3e-45 Score=348.55 Aligned_cols=277 Identities=17% Similarity=0.229 Sum_probs=242.7
Q ss_pred CEEEcccCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcce
Q 012184 1 MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI 80 (469)
Q Consensus 1 l~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~ 80 (469)
||++||... ..++ ++++||+.+++|..++++ |.+|.+|++++++++||++||..... ..++
T Consensus 18 i~v~GG~~~-~~~~-~~~~~d~~~~~W~~~~~~----------------p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~ 78 (302)
T 2xn4_A 18 MVVVGGQAP-KAIR-SVECYDFKEERWHQVAEL----------------PSRRCRAGMVYMAGLVFAVGGFNGSL-RVRT 78 (302)
T ss_dssp EEEECCBSS-SBCC-CEEEEETTTTEEEEECCC----------------SSCCBSCEEEEETTEEEEESCBCSSS-BCCC
T ss_pred EEEECCCCC-CCCC-cEEEEcCcCCcEeEcccC----------------CcccccceEEEECCEEEEEeCcCCCc-cccc
Confidence 689999764 4567 999999999999999876 77899999999999999999987543 5678
Q ss_pred EEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceE
Q 012184 81 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSA 160 (469)
Q Consensus 81 ~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~ 160 (469)
+++||+.+++|+.++ ++|.+|.+|++++++++||++||.+... .++++++||+.+++|+.+. ++|.+|.+|++
T Consensus 79 ~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~ 151 (302)
T 2xn4_A 79 VDSYDPVKDQWTSVA---NMRDRRSTLGAAVLNGLLYAVGGFDGST-GLSSVEAYNIKSNEWFHVA---PMNTRRSSVGV 151 (302)
T ss_dssp EEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEEEEECSSC-EEEEEEEEETTTTEEEEEC---CCSSCCBSCEE
T ss_pred eEEECCCCCceeeCC---CCCccccceEEEEECCEEEEEcCCCCCc-cCceEEEEeCCCCeEeecC---CCCCcccCceE
Confidence 999999999999998 7899999999999999999999987644 5789999999999999986 77899999999
Q ss_pred EEEcCcEEEEEecCCCC--cccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEEC
Q 012184 161 ALHANRYLIVFGGCSHS--IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNM 238 (469)
Q Consensus 161 ~~~~~~~l~v~GG~~~~--~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~ 238 (469)
+.+ +++||+|||.+.. ..++++++||+.+++|+.+. ++|.+|..|+++.++++|||+||.+.....+++++||+
T Consensus 152 ~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 227 (302)
T 2xn4_A 152 GVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA---EMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDP 227 (302)
T ss_dssp EEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEET
T ss_pred EEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECC---CCccccccccEEEECCEEEEECCCCCCcccceEEEEeC
Confidence 998 6789999998654 35799999999999999985 78999999999999999999999887766889999999
Q ss_pred CCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC-CCceEEEEECCCCCCCCcc-ccCCCchhhcchhh
Q 012184 239 TKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPK-IFQSPAAAAAAASV 315 (469)
Q Consensus 239 ~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~d~~~~~w~~~~-~~~~~~~~~~~~~~ 315 (469)
.+++|+.++.+ |.+|.+|+++.. ++.|||+||.++. ..+++++||+.++.|..++ .+|.++..+.++++
T Consensus 228 ~~~~W~~~~~~----~~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~r~~~~~~~~ 298 (302)
T 2xn4_A 228 TTNAWRQVADM----NMCRRNAGVCAV----NGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVI 298 (302)
T ss_dssp TTTEEEEECCC----SSCCBSCEEEEE----TTEEEEECCBCSSSBCCCEEEEETTTTEEEECSSCCSSCCBSCEEEEE
T ss_pred CCCCEeeCCCC----CCccccCeEEEE----CCEEEEECCcCCCcccccEEEEcCCCCeEEECCcccCcccccceEEEe
Confidence 99999998765 456778887766 7899999998754 5788999999999999886 78888877765543
No 5
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=6e-45 Score=349.68 Aligned_cols=280 Identities=19% Similarity=0.244 Sum_probs=235.8
Q ss_pred CEEEcccCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEcccc-----CCC
Q 012184 1 MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHY-----KKS 75 (469)
Q Consensus 1 l~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~-----~~~ 75 (469)
||++|| + +++.|||.+++|.. ++++ .|.+|.+|++++++++||++||.. ...
T Consensus 7 l~~~GG-------~-~~~~yd~~~~~W~~-~~~~--------------~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 63 (315)
T 4asc_A 7 IFMISE-------E-GAVAYDPAANECYC-ASLS--------------SQVPKNHVSLVTKENQVFVAGGLFYNEDNKED 63 (315)
T ss_dssp EEEEET-------T-EEEEEETTTTEEEE-EECC--------------CCSCSSEEEEECTTCCEEEEEEEEECSSCSSS
T ss_pred EEEEcC-------C-ceEEECCCCCeEec-CCCC--------------CCCCccceEEEEECCEEEEEcCcccCCCCCcc
Confidence 588999 4 89999999999986 4431 266899999999999999999973 122
Q ss_pred CCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCC--CCCccCcEEEEECCCCeEEEeeeCCCCCC
Q 012184 76 SDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDR--SRKLLNDVHFLDLETMTWDAVEVTQTPPA 153 (469)
Q Consensus 76 ~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~--~~~~~~~v~~~d~~t~~W~~~~~~g~~p~ 153 (469)
...+++++||+.+++|+.++ ++|.+|.+|++++++++||++||.+. .....+++++||+.+++|+.+. ++|.
T Consensus 64 ~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~ 137 (315)
T 4asc_A 64 PMSAYFLQFDHLDSEWLGMP---PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD---PLPY 137 (315)
T ss_dssp CEEEEEEEEETTTTEEEECC---CBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC---CCSS
T ss_pred ccccceEEecCCCCeEEECC---CCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC---CCCC
Confidence 24567999999999999997 78999999999999999999999753 3457899999999999999986 7889
Q ss_pred CCCCceEEEEcCcEEEEEecC-CCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcce
Q 012184 154 PRYDHSAALHANRYLIVFGGC-SHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQE 232 (469)
Q Consensus 154 ~r~~~~~~~~~~~~l~v~GG~-~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d 232 (469)
+|.+|+++.+ +++||+|||. .....++++++||+.+++|+.+. ++|.+|..|+++.++++|||+||.+.....++
T Consensus 138 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 213 (315)
T 4asc_A 138 VVYGHTVLSH-MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA---PMQTARSLFGATVHDGRIIVAAGVTDTGLTSS 213 (315)
T ss_dssp CCBSCEEEEE-TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEEEEECSSSEEEE
T ss_pred cccceeEEEE-CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECC---CCCCchhceEEEEECCEEEEEeccCCCCccce
Confidence 9999999998 6679999998 55577899999999999999975 78999999999999999999999887777889
Q ss_pred EEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCC----------CCCceEEEEECCCCCCCCccc
Q 012184 233 TIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG----------KYNNEVFVMRLKPRDIPRPKI 302 (469)
Q Consensus 233 ~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~----------~~~~~~~~~d~~~~~w~~~~~ 302 (469)
+++||+.+++|+.++++ |.+|.+|+++.. +++|||+||.++ ...+++++||+.++.|..+
T Consensus 214 ~~~yd~~~~~W~~~~~~----p~~r~~~~~~~~----~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~-- 283 (315)
T 4asc_A 214 AEVYSITDNKWAPFEAF----PQERSSLSLVSL----VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV-- 283 (315)
T ss_dssp EEEEETTTTEEEEECCC----SSCCBSCEEEEE----TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE--
T ss_pred EEEEECCCCeEEECCCC----CCcccceeEEEE----CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh--
Confidence 99999999999999754 567888887776 789999999853 2468899999999999987
Q ss_pred cCCCchhhcch-hhhHHHhhcc
Q 012184 303 FQSPAAAAAAA-SVTAAYALAK 323 (469)
Q Consensus 303 ~~~~~~~~~~~-~~~~~~~~gg 323 (469)
++.++..+.++ ....+|++..
T Consensus 284 ~~~~r~~~~~~~~~~~l~v~~~ 305 (315)
T 4asc_A 284 LREIAYAAGATFLPVRLNVLRL 305 (315)
T ss_dssp ESCSSCCSSCEEEEEEECGGGS
T ss_pred ccCCcCccceEEeCCEEEEEEe
Confidence 55555555433 3445666643
No 6
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=1.4e-43 Score=340.65 Aligned_cols=279 Identities=17% Similarity=0.258 Sum_probs=234.5
Q ss_pred CEEEcccCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCC-----C
Q 012184 1 MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK-----S 75 (469)
Q Consensus 1 l~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~-----~ 75 (469)
||++||. +++.|||.+++|...+.. .|.+|.+|++++++++||++||.... .
T Consensus 18 i~~~GG~--------~~~~yd~~~~~W~~~~~~---------------~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 74 (318)
T 2woz_A 18 ILLVNDT--------AAVAYDPMENECYLTALA---------------EQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQ 74 (318)
T ss_dssp EEEECSS--------EEEEEETTTTEEEEEEEC---------------TTSCSSEEEEECSSSCEEEEESSCC-------
T ss_pred hhhcccc--------ceEEECCCCCceecccCC---------------ccCCccceEEEEECCEEEEECCcccCccccCC
Confidence 5899993 689999999999984332 15789999999999999999996321 1
Q ss_pred CCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCC-CCCccCcEEEEECCCCeEEEeeeCCCCCCC
Q 012184 76 SDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDR-SRKLLNDVHFLDLETMTWDAVEVTQTPPAP 154 (469)
Q Consensus 76 ~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~-~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~ 154 (469)
...+++++||+.+++|..++ ++|.+|.+|++++++++||++||... ....++++++||+.+++|+.+. ++|.+
T Consensus 75 ~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~ 148 (318)
T 2woz_A 75 PLQSYFFQLDNVSSEWVGLP---PLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK---NLPIK 148 (318)
T ss_dssp CCCBEEEEEETTTTEEEECS---CBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC---CCSSC
T ss_pred CccccEEEEeCCCCcEEECC---CCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC---CCCCc
Confidence 24456999999999999997 78999999999999999999999873 3446899999999999999986 78899
Q ss_pred CCCceEEEEcCcEEEEEecCC-CCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceE
Q 012184 155 RYDHSAALHANRYLIVFGGCS-HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQET 233 (469)
Q Consensus 155 r~~~~~~~~~~~~l~v~GG~~-~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~ 233 (469)
|.+|+++++ +++||+|||.. ....++++++||+.+++|+.+. ++|.+|..|+++.++++|||+||.+.....+++
T Consensus 149 r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 224 (318)
T 2woz_A 149 VYGHNVISH-NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA---PMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASV 224 (318)
T ss_dssp EESCEEEEE-TTEEEEECCEESSSCBCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEEEEEETTEEEEEE
T ss_pred ccccEEEEE-CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECC---CCCCCcccceEEEECCEEEEEcCcCCCCccceE
Confidence 999999997 77899999974 3456899999999999999985 789999999999999999999998776667899
Q ss_pred EEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCC----------CCCceEEEEECCCCCCCCcccc
Q 012184 234 IVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG----------KYNNEVFVMRLKPRDIPRPKIF 303 (469)
Q Consensus 234 ~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~----------~~~~~~~~~d~~~~~w~~~~~~ 303 (469)
++||+.+++|+.++.+ |.+|.+|+++.. ++.|||+||.+. ...+++|+||+.+++|..+ +
T Consensus 225 ~~yd~~~~~W~~~~~~----p~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~ 294 (318)
T 2woz_A 225 EAFDLKTNKWEVMTEF----PQERSSISLVSL----AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM--L 294 (318)
T ss_dssp EEEETTTCCEEECCCC----SSCCBSCEEEEE----TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE--E
T ss_pred EEEECCCCeEEECCCC----CCcccceEEEEE----CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh--c
Confidence 9999999999998765 456788887776 789999999864 2468999999999999987 6
Q ss_pred CCCchhhcchh-hhHHHhhc
Q 012184 304 QSPAAAAAAAS-VTAAYALA 322 (469)
Q Consensus 304 ~~~~~~~~~~~-~~~~~~~g 322 (469)
|.++..+.++. ...+|++.
T Consensus 295 ~~~r~~~~~~~~~~~iyi~~ 314 (318)
T 2woz_A 295 KEIRYASGASCLATRLNLFK 314 (318)
T ss_dssp SCCGGGTTCEEEEEEEEGGG
T ss_pred ccccccccceeeCCEEEEEE
Confidence 77777665444 33455553
No 7
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=3.6e-40 Score=322.04 Aligned_cols=268 Identities=13% Similarity=0.135 Sum_probs=210.9
Q ss_pred CEEEcccCCCcccCCceEEEEcc--CCceeeeeecccccCCccccCCCCCCC-CCCcCeeeEEECCEEEEEccc-c---C
Q 012184 1 MLLRCSIRNYTLLEGVVMVFDLR--SLAWSNLRLETELDADKTEDSGLLEVL-PPMSDHCMVKWGTKLLILGGH-Y---K 73 (469)
Q Consensus 1 l~~~GG~~~~~~~~~~~~~~d~~--~~~W~~~~~~~~~~~~~~~~~~~~~~p-~~r~~~~~~~~~~~iy~~GG~-~---~ 73 (469)
|||+||... + ++++||+. +++|+.++++ | .+|.+|++++++++||++||. . .
T Consensus 22 iyv~GG~~~----~-~~~~~d~~~~~~~W~~~~~~----------------p~~~R~~~~~~~~~~~lyv~GG~~~~~~~ 80 (357)
T 2uvk_A 22 VYIGLGSAG----T-AWYKLDTQAKDKKWTALAAF----------------PGGPRDQATSAFIDGNLYVFGGIGKNSEG 80 (357)
T ss_dssp EEEECGGGT----T-CEEEEETTSSSCCEEECCCC----------------TTCCCBSCEEEEETTEEEEECCEEECTTS
T ss_pred EEEEeCcCC----C-eEEEEccccCCCCeeECCCC----------------CCCcCccceEEEECCEEEEEcCCCCCCCc
Confidence 699999653 4 89999998 5999999887 6 799999999999999999998 3 1
Q ss_pred CCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCC---------------------------
Q 012184 74 KSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSR--------------------------- 126 (469)
Q Consensus 74 ~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~--------------------------- 126 (469)
.....+++++||+.+++|+.+++.. |.+|.+|++++++++||+|||.+...
T Consensus 81 ~~~~~~~v~~yd~~~~~W~~~~~~~--p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (357)
T 2uvk_A 81 LTQVFNDVHKYNPKTNSWVKLMSHA--PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFD 158 (357)
T ss_dssp CEEECCCEEEEETTTTEEEECSCCC--SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred cceeeccEEEEeCCCCcEEECCCCC--CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcc
Confidence 2235688999999999999998431 59999999999999999999986431
Q ss_pred ------CccCcEEEEECCCCeEEEeeeCCCCCCCCC-CceEEEEcCcEEEEEecCCCC-cccCcEEEEEC--CCCceEee
Q 012184 127 ------KLLNDVHFLDLETMTWDAVEVTQTPPAPRY-DHSAALHANRYLIVFGGCSHS-IFFNDLHVLDL--QTNEWSQP 196 (469)
Q Consensus 127 ------~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~-~~~~~~~~~~~l~v~GG~~~~-~~~~~i~~~d~--~~~~W~~~ 196 (469)
.+++++++||+.+++|+.+. ++|.+|. +|+++++ +++||||||.... ..++++++||+ .+++|+.+
T Consensus 159 ~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~ 234 (357)
T 2uvk_A 159 KKAEDYFFNKFLLSFDPSTQQWSYAG---ESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKL 234 (357)
T ss_dssp SCGGGGCCCCEEEEEETTTTEEEEEE---ECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEEC
T ss_pred ccccccCCcccEEEEeCCCCcEEECC---CCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEec
Confidence 24689999999999999996 5666554 4888887 6789999997543 45789999987 89999998
Q ss_pred eecCCCCCCCcceEEEEECCEEEEEecCCCC-----------------CCcceEEEEECCCCcEEEeccCCCCCCCCCCC
Q 012184 197 EIKGDLVTGRAGHAGITIDENWYIVGGGDNN-----------------NGCQETIVLNMTKLAWSILTSVKGRNPLASEG 259 (469)
Q Consensus 197 ~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-----------------~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~ 259 (469)
... +.|.+|..|+++.++++|||+||.+.. ..++++++||+.+++|+.++.+ |.+|.+
T Consensus 235 ~~~-~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~----p~~r~~ 309 (357)
T 2uvk_A 235 APV-SSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL----SQGRAY 309 (357)
T ss_dssp CCS-STTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC----SSCCBS
T ss_pred CCC-CCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC----CCCccc
Confidence 632 334456788899999999999996432 2346899999999999998765 466788
Q ss_pred cceEEEEEcCCcEEEEEeccCCC--CCceEEEEECCCCCCCCccccC
Q 012184 260 LSVCSAIIEGEHHLVAFGGYNGK--YNNEVFVMRLKPRDIPRPKIFQ 304 (469)
Q Consensus 260 ~s~~~~~~~~~~~l~v~GG~~~~--~~~~~~~~d~~~~~w~~~~~~~ 304 (469)
|+++.. +++||||||.+.. ..+++++|++++++|....+.|
T Consensus 310 ~~~~~~----~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~ 352 (357)
T 2uvk_A 310 GVSLPW----NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEH 352 (357)
T ss_dssp SEEEEE----TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred ceeEEe----CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence 887666 7899999998653 4689999999999998766554
No 8
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.4e-39 Score=310.41 Aligned_cols=234 Identities=19% Similarity=0.235 Sum_probs=208.6
Q ss_pred CEEEcccCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcce
Q 012184 1 MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI 80 (469)
Q Consensus 1 l~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~ 80 (469)
|||+||......++ ++++||+.+++|+.++++ |.+|.+|++++++++||++||..... ..++
T Consensus 64 lyv~GG~~~~~~~~-~~~~~d~~~~~W~~~~~~----------------p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~ 125 (302)
T 2xn4_A 64 VFAVGGFNGSLRVR-TVDSYDPVKDQWTSVANM----------------RDRRSTLGAAVLNGLLYAVGGFDGST-GLSS 125 (302)
T ss_dssp EEEESCBCSSSBCC-CEEEEETTTTEEEEECCC----------------SSCCBSCEEEEETTEEEEEEEECSSC-EEEE
T ss_pred EEEEeCcCCCcccc-ceEEECCCCCceeeCCCC----------------CccccceEEEEECCEEEEEcCCCCCc-cCce
Confidence 69999988777788 999999999999999887 78999999999999999999987543 5688
Q ss_pred EEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCC-CccCcEEEEECCCCeEEEeeeCCCCCCCCCCce
Q 012184 81 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSR-KLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS 159 (469)
Q Consensus 81 ~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~-~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~ 159 (469)
+++||+.+++|+.++ ++|.+|.+|++++++++||++||.+... ...+++++||+.+++|+.+. ++|.+|.+|+
T Consensus 126 ~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~ 199 (302)
T 2xn4_A 126 VEAYNIKSNEWFHVA---PMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA---EMSTRRSGAG 199 (302)
T ss_dssp EEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEEC---CCSSCCBSCE
T ss_pred EEEEeCCCCeEeecC---CCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECC---CCcccccccc
Confidence 999999999999998 7899999999999999999999987653 35889999999999999996 7889999999
Q ss_pred EEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECC
Q 012184 160 AALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMT 239 (469)
Q Consensus 160 ~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~ 239 (469)
++++ +++||+|||.+.....+++++||+.+++|+.+. ++|.+|..|+++.++++|||+||.+.....+++++||+.
T Consensus 200 ~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 275 (302)
T 2xn4_A 200 VGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVA---DMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPT 275 (302)
T ss_dssp EEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred EEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeCC---CCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCC
Confidence 9988 678999999887777899999999999999985 788999999999999999999998777678899999999
Q ss_pred CCcEEEeccCCCCCCCCCCCcceEEE
Q 012184 240 KLAWSILTSVKGRNPLASEGLSVCSA 265 (469)
Q Consensus 240 ~~~W~~~~~~~~~~p~~r~~~s~~~~ 265 (469)
+++|+.++. ..|.+|.+|+++++
T Consensus 276 ~~~W~~~~~---~~~~~r~~~~~~~~ 298 (302)
T 2xn4_A 276 TDKWTVVSS---CMSTGRSYAGVTVI 298 (302)
T ss_dssp TTEEEECSS---CCSSCCBSCEEEEE
T ss_pred CCeEEECCc---ccCcccccceEEEe
Confidence 999999862 22567888887765
No 9
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=1.9e-40 Score=317.26 Aligned_cols=257 Identities=18% Similarity=0.252 Sum_probs=217.1
Q ss_pred CCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccC---CCC
Q 012184 50 LPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGED---RSR 126 (469)
Q Consensus 50 p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~---~~~ 126 (469)
|++|..|+++.+++.||++||. .....+++++||+.+++|..++ ++|.+|.+|++++++++||+|||.. ...
T Consensus 12 ~~~~~~~~~~~~~~~i~v~GG~--~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~ 86 (308)
T 1zgk_A 12 GLVPRGSHAPKVGRLIYTAGGY--FRQSLSYLEAYNPSNGTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGN 86 (308)
T ss_dssp ---------CCCCCCEEEECCB--SSSBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCEEEETTEE
T ss_pred CeeeCCccccCCCCEEEEEeCc--CCCCcceEEEEcCCCCeEeECC---CCCcccccceEEEECCEEEEECCCcCCCCCC
Confidence 7899999999999999999998 2346778999999999999997 7899999999999999999999984 333
Q ss_pred CccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCC
Q 012184 127 KLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGR 206 (469)
Q Consensus 127 ~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r 206 (469)
...+++++||+.+++|+.++ ++|.+|..|+++++ +++||+|||......++++++||+.+++|+.+. ++|.+|
T Consensus 87 ~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r 159 (308)
T 1zgk_A 87 TDSSALDCYNPMTNQWSPCA---PMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA---PMLTRR 159 (308)
T ss_dssp EECCCEEEEETTTTEEEECC---CCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEECC---CCSSCC
T ss_pred eecceEEEECCCCCeEeECC---CCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeEeECC---CCCccc
Confidence 46889999999999999986 78899999999998 678999999887777899999999999999975 789999
Q ss_pred cceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC-CCc
Q 012184 207 AGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNN 285 (469)
Q Consensus 207 ~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~-~~~ 285 (469)
..|+++.++++|||+||.+.....+++++||+.+++|+.++.+ |.+|.+|+++.. ++.|||+||.++. ..+
T Consensus 160 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~----p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~ 231 (308)
T 1zgk_A 160 IGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAM----NTIRSGAGVCVL----HNCIYAAGGYDGQDQLN 231 (308)
T ss_dssp BSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCC----SSCCBSCEEEEE----TTEEEEECCBCSSSBCC
T ss_pred cceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCC----CCccccceEEEE----CCEEEEEeCCCCCCccc
Confidence 9999999999999999988777789999999999999998754 567888887776 7899999998754 578
Q ss_pred eEEEEECCCCCCCCccccCCCchhhcch-hhhHHHhhccccc
Q 012184 286 EVFVMRLKPRDIPRPKIFQSPAAAAAAA-SVTAAYALAKSEK 326 (469)
Q Consensus 286 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~gg~~~ 326 (469)
++++||+.++.|..+..+|.++..+.++ ....+|++||...
T Consensus 232 ~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 232 SVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDG 273 (308)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred eEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCC
Confidence 9999999999999999888887766444 4456889998654
No 10
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=3.2e-40 Score=316.76 Aligned_cols=241 Identities=16% Similarity=0.203 Sum_probs=210.3
Q ss_pred CEEEccc-----CC-CcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccC-
Q 012184 1 MLLRCSI-----RN-YTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYK- 73 (469)
Q Consensus 1 l~~~GG~-----~~-~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~- 73 (469)
|||+||. .. ....+ ++++||+.+++|+.++++ |.+|.+|++++++++||++||...
T Consensus 48 iyv~GG~~~~~~~~~~~~~~-~~~~~d~~~~~W~~~~~~----------------p~~r~~~~~~~~~~~lyv~GG~~~~ 110 (315)
T 4asc_A 48 VFVAGGLFYNEDNKEDPMSA-YFLQFDHLDSEWLGMPPL----------------PSPRCLFGLGEALNSIYVVGGREIK 110 (315)
T ss_dssp EEEEEEEEECSSCSSSCEEE-EEEEEETTTTEEEECCCB----------------SSCEESCEEEEETTEEEEECCEESS
T ss_pred EEEEcCcccCCCCCcccccc-ceEEecCCCCeEEECCCC----------------CcchhceeEEEECCEEEEEeCCcCC
Confidence 6999995 22 23334 799999999999999877 789999999999999999999763
Q ss_pred -CCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCC
Q 012184 74 -KSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP 152 (469)
Q Consensus 74 -~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p 152 (469)
.....+++++||+.+++|+.++ ++|.+|.+|++++++++||++||.......++++++||+.+++|+.++ ++|
T Consensus 111 ~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p 184 (315)
T 4asc_A 111 DGERCLDSVMCYDRLSFKWGESD---PLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA---PMQ 184 (315)
T ss_dssp TTCCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECC---CCS
T ss_pred CCCcccceEEEECCCCCcEeECC---CCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECC---CCC
Confidence 3446788999999999999998 789999999999999999999999666667999999999999999986 788
Q ss_pred CCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCC-----
Q 012184 153 APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN----- 227 (469)
Q Consensus 153 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~----- 227 (469)
.+|.+|+++++ +++|||+||.+....++++++||+.+++|+.+. ++|.+|..|+++.++++|||+||.+..
T Consensus 185 ~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~ 260 (315)
T 4asc_A 185 TARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFE---AFPQERSSLSLVSLVGTLYAIGGFATLETESG 260 (315)
T ss_dssp SCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEEEEEEEEECTTS
T ss_pred CchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCCCeEEECC---CCCCcccceeEEEECCEEEEECCccccCcCCc
Confidence 99999999998 668999999987778899999999999999985 789999999999999999999997531
Q ss_pred ----CCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEec
Q 012184 228 ----NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGG 278 (469)
Q Consensus 228 ----~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG 278 (469)
...+++++||+.+++|+.+. |.+|.+|+++++ ++.||++..
T Consensus 261 ~~~~~~~~~v~~yd~~~~~W~~~~------~~~r~~~~~~~~----~~~l~v~~~ 305 (315)
T 4asc_A 261 ELVPTELNDIWRYNEEEKKWEGVL------REIAYAAGATFL----PVRLNVLRL 305 (315)
T ss_dssp CEEEEEEEEEEEEETTTTEEEEEE------SCSSCCSSCEEE----EEEECGGGS
T ss_pred cccccccCcEEEecCCCChhhhhc------cCCcCccceEEe----CCEEEEEEe
Confidence 23678999999999999982 456888988877 788998864
No 11
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=2.2e-39 Score=309.58 Aligned_cols=233 Identities=13% Similarity=0.155 Sum_probs=210.0
Q ss_pred CEEEcccCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcce
Q 012184 1 MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI 80 (469)
Q Consensus 1 l~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~ 80 (469)
|||+||.. ...++ ++++||+.+++|+.++++ |.+|.+|++++++++||++||........++
T Consensus 58 lyv~GG~~-~~~~~-~~~~~d~~~~~W~~~~~~----------------p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 119 (306)
T 3ii7_A 58 VYILGGSQ-LFPIK-RMDCYNVVKDSWYSKLGP----------------PTPRDSLAACAAEGKIYTSGGSEVGNSALYL 119 (306)
T ss_dssp EEEECCBS-SSBCC-EEEEEETTTTEEEEEECC----------------SSCCBSCEEEEETTEEEEECCBBTTBSCCCC
T ss_pred EEEEeCCC-CCCcc-eEEEEeCCCCeEEECCCC----------------CccccceeEEEECCEEEEECCCCCCCcEeee
Confidence 69999987 66778 999999999999999887 7899999999999999999998755557788
Q ss_pred EEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCC---ccCcEEEEECCCCeEEEeeeCCCCCCCCCC
Q 012184 81 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRK---LLNDVHFLDLETMTWDAVEVTQTPPAPRYD 157 (469)
Q Consensus 81 ~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~---~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~ 157 (469)
+++||+.+++|+.++ ++|.+|.+|++++++++||++||...... ..+++++||+.+++|+.+. ++|.+|.+
T Consensus 120 ~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~ 193 (306)
T 3ii7_A 120 FECYDTRTESWHTKP---SMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELC---PMIEARKN 193 (306)
T ss_dssp EEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEEC---CCSSCCBS
T ss_pred EEEEeCCCCceEeCC---CCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECC---Cccchhhc
Confidence 999999999999997 78999999999999999999999876543 3899999999999999997 78899999
Q ss_pred ceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEE
Q 012184 158 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN 237 (469)
Q Consensus 158 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d 237 (469)
|+++.+ +++||++||.+....++++++||+.+++|+.+. ++|.+|..|+++.++++|||+||.+.....+++++||
T Consensus 194 ~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd 269 (306)
T 3ii7_A 194 HGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVS---PMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYN 269 (306)
T ss_dssp CEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECC---CCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEE
T ss_pred ceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECC---CCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEc
Confidence 999998 678999999887777899999999999999975 7899999999999999999999998777789999999
Q ss_pred CCCCcEEEeccCCCCCCCCCCCcceEEE
Q 012184 238 MTKLAWSILTSVKGRNPLASEGLSVCSA 265 (469)
Q Consensus 238 ~~~~~W~~~~~~~~~~p~~r~~~s~~~~ 265 (469)
+.+++|+.++.+ |.+|.+|+++++
T Consensus 270 ~~~~~W~~~~~~----~~~r~~~~~~~~ 293 (306)
T 3ii7_A 270 TETDKWVANSKV----RAFPVTSCLICV 293 (306)
T ss_dssp TTTTEEEEEEEE----ECCSCTTCEEEE
T ss_pred CCCCeEEeCCCc----ccccceeEEEEE
Confidence 999999999776 456788887766
No 12
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=1.5e-39 Score=312.59 Aligned_cols=241 Identities=16% Similarity=0.233 Sum_probs=209.0
Q ss_pred CEEEcccCC---C--cccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccC-C
Q 012184 1 MLLRCSIRN---Y--TLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYK-K 74 (469)
Q Consensus 1 l~~~GG~~~---~--~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~-~ 74 (469)
||++||... + ..+++++++||+.+++|..++++ |.+|.+|++++++++||++||... .
T Consensus 59 lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~----------------p~~r~~~~~~~~~~~iyv~GG~~~~~ 122 (318)
T 2woz_A 59 VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPL----------------PSARCLFGLGEVDDKIYVVAGKDLQT 122 (318)
T ss_dssp EEEEESSCC-------CCCBEEEEEETTTTEEEECSCB----------------SSCBCSCEEEEETTEEEEEEEEBTTT
T ss_pred EEEECCcccCccccCCCccccEEEEeCCCCcEEECCCC----------------CccccccceEEECCEEEEEcCccCCC
Confidence 699999521 1 12332599999999999999877 789999999999999999999874 3
Q ss_pred CCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCC
Q 012184 75 SSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP 154 (469)
Q Consensus 75 ~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~ 154 (469)
....+++++||+.+++|+.++ ++|.+|.+|++++++++||++||........+++++||+.+++|+.++ ++|.+
T Consensus 123 ~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~ 196 (318)
T 2woz_A 123 EASLDSVLCYDPVAAKWSEVK---NLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA---PMKTP 196 (318)
T ss_dssp CCEEEEEEEEETTTTEEEEEC---CCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEEC---CCSSC
T ss_pred CcccceEEEEeCCCCCEeECC---CCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECC---CCCCC
Confidence 446789999999999999998 789999999999999999999998766667899999999999999986 78899
Q ss_pred CCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCC-------
Q 012184 155 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN------- 227 (469)
Q Consensus 155 r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~------- 227 (469)
|..|+++++ +++||||||.+.....+++++||+.+++|+.+. ++|.+|..|+++.++++|||+||.+..
T Consensus 197 r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~ 272 (318)
T 2woz_A 197 RSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMT---EFPQERSSISLVSLAGSLYAIGGFAMIQLESKEF 272 (318)
T ss_dssp CBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECC---CCSSCCBSCEEEEETTEEEEECCBCCBC----CC
T ss_pred cccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECC---CCCCcccceEEEEECCEEEEECCeeccCCCCcee
Confidence 999999988 668999999887777899999999999999975 789999999999999999999997642
Q ss_pred --CCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEe
Q 012184 228 --NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFG 277 (469)
Q Consensus 228 --~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~G 277 (469)
...+++|+||+.+++|+.+ + |.+|++|+++.+ +++|||+.
T Consensus 273 ~~~~~~~v~~yd~~~~~W~~~--~----~~~r~~~~~~~~----~~~iyi~~ 314 (318)
T 2woz_A 273 APTEVNDIWKYEDDKKEWAGM--L----KEIRYASGASCL----ATRLNLFK 314 (318)
T ss_dssp BCCBCCCEEEEETTTTEEEEE--E----SCCGGGTTCEEE----EEEEEGGG
T ss_pred ccceeeeEEEEeCCCCEehhh--c----ccccccccceee----CCEEEEEE
Confidence 3468999999999999998 2 466788988887 78898764
No 13
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.6e-38 Score=302.83 Aligned_cols=232 Identities=18% Similarity=0.264 Sum_probs=208.4
Q ss_pred CEEEcccCCCcccCCceEEEEccCCc---eeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCC
Q 012184 1 MLLRCSIRNYTLLEGVVMVFDLRSLA---WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSD 77 (469)
Q Consensus 1 l~~~GG~~~~~~~~~~~~~~d~~~~~---W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~ 77 (469)
||++||......++ ++++||+.+++ |+.++++ |.+|.+|++++++++||++||..... .
T Consensus 65 l~v~GG~~~~~~~~-~~~~~d~~~~~~~~W~~~~~~----------------p~~r~~~~~~~~~~~lyv~GG~~~~~-~ 126 (301)
T 2vpj_A 65 IYVIGGYDGRSRLS-SVECLDYTADEDGVWYSVAPM----------------NVRRGLAGATTLGDMIYVSGGFDGSR-R 126 (301)
T ss_dssp EEEECCBCSSCBCC-CEEEEETTCCTTCCCEEECCC----------------SSCCBSCEEEEETTEEEEECCBCSSC-B
T ss_pred EEEEcCCCCCccCc-eEEEEECCCCCCCeeEECCCC----------------CCCccceeEEEECCEEEEEcccCCCc-c
Confidence 69999988777788 99999999999 9999877 78999999999999999999987544 5
Q ss_pred cceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCC
Q 012184 78 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD 157 (469)
Q Consensus 78 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~ 157 (469)
.+++++||+.+++|+.++ ++|.+|.+|++++++++||++||.+... ..+++++||+.+++|+.+. ++|.+|.+
T Consensus 127 ~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~---~~p~~r~~ 199 (301)
T 2vpj_A 127 HTSMERYDPNIDQWSMLG---DMQTAREGAGLVVASGVIYCLGGYDGLN-ILNSVEKYDPHTGHWTNVT---PMATKRSG 199 (301)
T ss_dssp CCEEEEEETTTTEEEEEE---ECSSCCBSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTTTEEEEEC---CCSSCCBS
T ss_pred cceEEEEcCCCCeEEECC---CCCCCcccceEEEECCEEEEECCCCCCc-ccceEEEEeCCCCcEEeCC---CCCccccc
Confidence 788999999999999998 7899999999999999999999987654 6899999999999999985 77899999
Q ss_pred ceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEE
Q 012184 158 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN 237 (469)
Q Consensus 158 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d 237 (469)
|+++.+ +++||++||.+.....+++++||+.+++|..+. ++|.+|..|+++.++++|||+||.+.....+++++||
T Consensus 200 ~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd 275 (301)
T 2vpj_A 200 AGVALL-NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT---SMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYD 275 (301)
T ss_dssp CEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEE
T ss_pred ceEEEE-CCEEEEEeCCCCCcccceEEEEeCCCCcEEECC---CCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEc
Confidence 999998 678999999987777899999999999999975 7899999999999999999999987776778999999
Q ss_pred CCCCcEEEeccCCCCCCCCCCCcceEEE
Q 012184 238 MTKLAWSILTSVKGRNPLASEGLSVCSA 265 (469)
Q Consensus 238 ~~~~~W~~~~~~~~~~p~~r~~~s~~~~ 265 (469)
+.+++|+.++.+ |.+|.+|+++.+
T Consensus 276 ~~~~~W~~~~~~----~~~r~~~~~~~~ 299 (301)
T 2vpj_A 276 PIIDSWEVVTSM----GTQRCDAGVCVL 299 (301)
T ss_dssp TTTTEEEEEEEE----EEEEESCEEEEE
T ss_pred CCCCeEEEcCCC----CcccccceEEEe
Confidence 999999999776 456778876654
No 14
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=9.9e-39 Score=311.82 Aligned_cols=262 Identities=18% Similarity=0.207 Sum_probs=209.5
Q ss_pred CCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECC--CCeEEEeecCCCCC-CCCcceEEEEECCEEEEEecc-
Q 012184 47 LEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLE--TNLCGVMETSGKVP-VARGGHSVTLVGSRLIIFGGE- 122 (469)
Q Consensus 47 ~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~--t~~W~~~~~~g~~p-~~r~~~~~~~~~~~lyi~GG~- 122 (469)
+++|.+|.+|++++++++||++||... +++++||+. +++|+.++ ++| .+|.+|++++++++||+|||.
T Consensus 4 ~~lP~~r~~~~~~~~~~~iyv~GG~~~-----~~~~~~d~~~~~~~W~~~~---~~p~~~R~~~~~~~~~~~lyv~GG~~ 75 (357)
T 2uvk_A 4 PETPVPFKSGTGAIDNDTVYIGLGSAG-----TAWYKLDTQAKDKKWTALA---AFPGGPRDQATSAFIDGNLYVFGGIG 75 (357)
T ss_dssp CCCSSCCCSCEEEEETTEEEEECGGGT-----TCEEEEETTSSSCCEEECC---CCTTCCCBSCEEEEETTEEEEECCEE
T ss_pred CCCCccccceEEEEECCEEEEEeCcCC-----CeEEEEccccCCCCeeECC---CCCCCcCccceEEEECCEEEEEcCCC
Confidence 456889999999999999999999864 359999998 59999998 788 899999999999999999998
Q ss_pred C---CCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCc---------------------
Q 012184 123 D---RSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI--------------------- 178 (469)
Q Consensus 123 ~---~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~--------------------- 178 (469)
. .....++++++||+.+++|+.+.+.. |.+|.+|+++++ +++||||||.+...
T Consensus 76 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (357)
T 2uvk_A 76 KNSEGLTQVFNDVHKYNPKTNSWVKLMSHA--PMGMAGHVTFVH-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKI 152 (357)
T ss_dssp ECTTSCEEECCCEEEEETTTTEEEECSCCC--SSCCSSEEEEEE-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCccceeeccEEEEeCCCCcEEECCCCC--CcccccceEEEE-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhh
Confidence 2 22346899999999999999998533 589999999887 77899999976432
Q ss_pred -------------ccCcEEEEECCCCceEeeeecCCCCCCC-cceEEEEECCEEEEEecCCCCC-CcceEEEEEC--CCC
Q 012184 179 -------------FFNDLHVLDLQTNEWSQPEIKGDLVTGR-AGHAGITIDENWYIVGGGDNNN-GCQETIVLNM--TKL 241 (469)
Q Consensus 179 -------------~~~~i~~~d~~~~~W~~~~~~~~~p~~r-~~~~~~~~~~~l~v~GG~~~~~-~~~d~~~~d~--~~~ 241 (469)
.++++++||+.+++|+.+. ++|.+| ..|+++.++++||||||.+... ..++++.||+ .++
T Consensus 153 ~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~ 229 (357)
T 2uvk_A 153 NAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAG---ESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNL 229 (357)
T ss_dssp HHHHHSSCGGGGCCCCEEEEEETTTTEEEEEE---ECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---C
T ss_pred hhhhccccccccCCcccEEEEeCCCCcEEECC---CCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCC
Confidence 4689999999999999985 566655 4599999999999999975443 3678999987 899
Q ss_pred cEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC------------------CCceEEEEECCCCCCCCcccc
Q 012184 242 AWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK------------------YNNEVFVMRLKPRDIPRPKIF 303 (469)
Q Consensus 242 ~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~------------------~~~~~~~~d~~~~~w~~~~~~ 303 (469)
.|+.++.++ .|..|.+|+++.. +++|||+||.+.. ..+++++||+.+++|..+..+
T Consensus 230 ~W~~~~~~~--~~~~~~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~ 303 (357)
T 2uvk_A 230 KWNKLAPVS--SPDGVAGGFAGIS----NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL 303 (357)
T ss_dssp EEEECCCSS--TTTCCBSCEEEEE----TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC
T ss_pred cEEecCCCC--CCcccccceEEEE----CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC
Confidence 999998763 3344566766666 7899999997421 236799999999999999999
Q ss_pred CCCchhhcch-hhhHHHhhccccccc
Q 012184 304 QSPAAAAAAA-SVTAAYALAKSEKLD 328 (469)
Q Consensus 304 ~~~~~~~~~~-~~~~~~~~gg~~~~~ 328 (469)
|.++..+.++ ....+|+|||.....
T Consensus 304 p~~r~~~~~~~~~~~i~v~GG~~~~~ 329 (357)
T 2uvk_A 304 SQGRAYGVSLPWNNSLLIIGGETAGG 329 (357)
T ss_dssp SSCCBSSEEEEETTEEEEEEEECGGG
T ss_pred CCCcccceeEEeCCEEEEEeeeCCCC
Confidence 9988877555 445699999976543
No 15
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=7.3e-38 Score=330.03 Aligned_cols=268 Identities=14% Similarity=0.138 Sum_probs=220.1
Q ss_pred CEEEcccCCCcccCCceEEEEccCCceeeee-ecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCC
Q 012184 1 MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLR-LETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSD 77 (469)
Q Consensus 1 l~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~-~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~ 77 (469)
|||+||... ..++ ++++||+.+++|+.++ +.+. +.+|.+|.+|+++++ +++||++||.......
T Consensus 400 iyv~GG~~~-~~~~-~v~~yd~~~~~W~~~~~~~p~-----------~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~ 466 (695)
T 2zwa_A 400 VFYMGGSNP-YRVN-EILQLSIHYDKIDMKNIEVSS-----------SEVPVARMCHTFTTISRNNQLLLIGGRKAPHQG 466 (695)
T ss_dssp EEEECCBSS-SBCC-CEEEEEECSSCEEEEECCCCC-----------SCCCCCCBSCEEEEETTTTEEEEECCBSSTTCB
T ss_pred EEEECCCCC-CCcC-cEEEEECCCCeEEEeccCCCC-----------CCCCccccceEEEEEccCCEEEEEcCCCCCCCc
Confidence 699999876 6778 9999999999999998 5321 234889999999999 9999999999876656
Q ss_pred cceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCC
Q 012184 78 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY 156 (469)
Q Consensus 78 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~ 156 (469)
.+++|+||+.+++|+.++ ++|.+|.+|+++++ +++||+|||.+... ++++||+.+++|+.+.+.|.+|.+|.
T Consensus 467 ~~dv~~yd~~t~~W~~~~---~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g~~p~~r~ 539 (695)
T 2zwa_A 467 LSDNWIFDMKTREWSMIK---SLSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKDEFFQNSL 539 (695)
T ss_dssp CCCCEEEETTTTEEEECC---CCSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSSGGGGSCC
T ss_pred cccEEEEeCCCCcEEECC---CCCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCCCCCCccc
Confidence 788999999999999997 89999999999997 99999999987654 89999999999999998888999999
Q ss_pred CceEEEEc-C-cEEEEEecCCCC--cccCcEEEEECCCCc------eEeeeecCCCCCCCcceEEEEEC-CEEEEEecCC
Q 012184 157 DHSAALHA-N-RYLIVFGGCSHS--IFFNDLHVLDLQTNE------WSQPEIKGDLVTGRAGHAGITID-ENWYIVGGGD 225 (469)
Q Consensus 157 ~~~~~~~~-~-~~l~v~GG~~~~--~~~~~i~~~d~~~~~------W~~~~~~~~~p~~r~~~~~~~~~-~~l~v~GG~~ 225 (469)
+|++++++ + ++||||||.... ..++++++||+.+++ |+.+.. .++.+|.+|+++.++ ++|||+||.+
T Consensus 540 ~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~--~p~~~R~~~~~~~~~~~~iyv~GG~~ 617 (695)
T 2zwa_A 540 VSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ--HPLFQRYGSQIKYITPRKLLIVGGTS 617 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE--CGGGCCBSCEEEEEETTEEEEECCBC
T ss_pred ceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCC--CCCCCcccceEEEeCCCEEEEECCcc
Confidence 99977764 2 789999998543 567999999999999 888763 126889999999999 9999999986
Q ss_pred CCC---CcceEEEEECCCCcEEEeccCCCCC----CCCCCCcceEEEEEcCCcEEEEEeccC-----CCCCceEEEEECC
Q 012184 226 NNN---GCQETIVLNMTKLAWSILTSVKGRN----PLASEGLSVCSAIIEGEHHLVAFGGYN-----GKYNNEVFVMRLK 293 (469)
Q Consensus 226 ~~~---~~~d~~~~d~~~~~W~~~~~~~~~~----p~~r~~~s~~~~~~~~~~~l~v~GG~~-----~~~~~~~~~~d~~ 293 (469)
... ..+++++||+.+++|+.++ ++... ++.+.+|+++.+ +++.|||+||.. +...+++|.+|+.
T Consensus 618 ~~~~~~~~~~v~~yd~~t~~W~~~~-~p~~~~~~~~p~~~gh~~~~~---~~g~i~v~GGg~~cfsfGt~~n~i~~ldl~ 693 (695)
T 2zwa_A 618 PSGLFDRTNSIISLDPLSETLTSIP-ISRRIWEDHSLMLAGFSLVST---SMGTIHIIGGGATCYGFGSVTNVGLKLIAI 693 (695)
T ss_dssp SSCCCCTTTSEEEEETTTTEEEECC-CCHHHHHHSCCCCSSCEEECC------CEEEECCEEECTTSCEEECCCEEEEEC
T ss_pred CCCCCCCCCeEEEEECCCCeEEEee-ccccccCCCCccceeeeEEEe---CCCEEEEEeCCccCcCccccccceEEEEEE
Confidence 543 4789999999999999653 23211 125677875544 233899999953 3345689999875
Q ss_pred C
Q 012184 294 P 294 (469)
Q Consensus 294 ~ 294 (469)
.
T Consensus 694 ~ 694 (695)
T 2zwa_A 694 A 694 (695)
T ss_dssp C
T ss_pred c
Confidence 4
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=1.4e-36 Score=320.16 Aligned_cols=260 Identities=16% Similarity=0.260 Sum_probs=213.2
Q ss_pred CCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee-c--CCCCCCCCcceEEEEE--CCEEEEEeccCC
Q 012184 50 LPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME-T--SGKVPVARGGHSVTLV--GSRLIIFGGEDR 124 (469)
Q Consensus 50 p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~-~--~g~~p~~r~~~~~~~~--~~~lyi~GG~~~ 124 (469)
|.+|++|+++ +++.||++||... ...+++++||+.+++|+.++ + .+.+|.+|.+|+++++ +++||+|||.+.
T Consensus 386 p~rr~g~~~~-~~~~iyv~GG~~~--~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~ 462 (695)
T 2zwa_A 386 INRKFGDVDV-AGNDVFYMGGSNP--YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKA 462 (695)
T ss_dssp TCCBSCEEEE-CSSCEEEECCBSS--SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSS
T ss_pred CCCceeEEEE-ECCEEEEECCCCC--CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCC
Confidence 6677776555 8999999999876 46788999999999999998 4 3568999999999999 999999999987
Q ss_pred CCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCC
Q 012184 125 SRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVT 204 (469)
Q Consensus 125 ~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~ 204 (469)
....++++++||+.+++|+.+. ++|.+|++|+++++.+++||||||.+... ++++||+.+++|+.+...+++|.
T Consensus 463 ~~~~~~dv~~yd~~t~~W~~~~---~~p~~R~~h~~~~~~~~~iyv~GG~~~~~---~v~~yd~~t~~W~~~~~~g~~p~ 536 (695)
T 2zwa_A 463 PHQGLSDNWIFDMKTREWSMIK---SLSHTRFRHSACSLPDGNVLILGGVTEGP---AMLLYNVTEEIFKDVTPKDEFFQ 536 (695)
T ss_dssp TTCBCCCCEEEETTTTEEEECC---CCSBCCBSCEEEECTTSCEEEECCBCSSC---SEEEEETTTTEEEECCCSSGGGG
T ss_pred CCCccccEEEEeCCCCcEEECC---CCCCCcccceEEEEcCCEEEEECCCCCCC---CEEEEECCCCceEEccCCCCCCC
Confidence 6657899999999999999985 78999999999997677899999987654 89999999999999987667899
Q ss_pred CCcceEEEEEC---CEEEEEecCCCC--CCcceEEEEECCCCc------EEEeccCCCCCCCCCCCcceEEEEEcCC-cE
Q 012184 205 GRAGHAGITID---ENWYIVGGGDNN--NGCQETIVLNMTKLA------WSILTSVKGRNPLASEGLSVCSAIIEGE-HH 272 (469)
Q Consensus 205 ~r~~~~~~~~~---~~l~v~GG~~~~--~~~~d~~~~d~~~~~------W~~~~~~~~~~p~~r~~~s~~~~~~~~~-~~ 272 (469)
+|.+|+++.++ ++|||+||.... ...+++++||+.++. |+.+..++ +.+|.+|+++.+ + ++
T Consensus 537 ~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p---~~~R~~~~~~~~----~~~~ 609 (695)
T 2zwa_A 537 NSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHP---LFQRYGSQIKYI----TPRK 609 (695)
T ss_dssp SCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECG---GGCCBSCEEEEE----ETTE
T ss_pred cccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCC---CCCcccceEEEe----CCCE
Confidence 99999987776 899999998543 457899999999999 88887642 467889987766 6 89
Q ss_pred EEEEeccCCC----CCceEEEEECCCCCCCCccccCC-------C-chhhcchh-hh-HHHhhccccc
Q 012184 273 LVAFGGYNGK----YNNEVFVMRLKPRDIPRPKIFQS-------P-AAAAAAAS-VT-AAYALAKSEK 326 (469)
Q Consensus 273 l~v~GG~~~~----~~~~~~~~d~~~~~w~~~~~~~~-------~-~~~~~~~~-~~-~~~~~gg~~~ 326 (469)
|||+||.+.. ..+++++||+.++.|.... +|. | ...+.++. .. .+|++||...
T Consensus 610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~-~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~ 676 (695)
T 2zwa_A 610 LLIVGGTSPSGLFDRTNSIISLDPLSETLTSIP-ISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGAT 676 (695)
T ss_dssp EEEECCBCSSCCCCTTTSEEEEETTTTEEEECC-CCHHHHHHSCCCCSSCEEECC---CEEEECCEEE
T ss_pred EEEECCccCCCCCCCCCeEEEEECCCCeEEEee-ccccccCCCCccceeeeEEEeCCCEEEEEeCCcc
Confidence 9999998643 4789999999999998432 221 1 12233333 33 5889988653
No 17
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=100.00 E-value=2e-33 Score=295.83 Aligned_cols=292 Identities=10% Similarity=0.043 Sum_probs=217.5
Q ss_pred CEEEcccCCCc------ccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCee--eE-EECCEEEEEccc
Q 012184 1 MLLRCSIRNYT------LLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHC--MV-KWGTKLLILGGH 71 (469)
Q Consensus 1 l~~~GG~~~~~------~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~--~~-~~~~~iy~~GG~ 71 (469)
||++||...+. ..+ .+++||+.+++|+.++.+ |.+|..|+ ++ ..+++||++||+
T Consensus 200 l~v~GG~~~~~~~~~~~~~~-~~~~yd~~t~~w~~~~~~----------------~~~~~~~~~~~~~~~~g~lyv~GG~ 262 (656)
T 1k3i_A 200 VLMWSSYRNDAFGGSPGGIT-LTSSWDPSTGIVSDRTVT----------------VTKHDMFCPGISMDGNGQIVVTGGN 262 (656)
T ss_dssp EEEEEECCCTTTCSCCCSEE-EEEEECTTTCCBCCCEEE----------------ECSCCCSSCEEEECTTSCEEEECSS
T ss_pred EEEEecccccccccCCCCeE-EEEEEeCCCCcEEeCccc----------------CCCCCCccccccCCCCCCEEEeCCC
Confidence 68999975432 234 789999999999999887 44554443 44 358999999997
Q ss_pred cCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCC-
Q 012184 72 YKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQ- 149 (469)
Q Consensus 72 ~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g- 149 (469)
... ++++||+.+++|..++ ++|.+|.+|+++++ +++||++||........+++++||+.+++|+.++..+
T Consensus 263 ~~~-----~v~~yd~~t~~W~~~~---~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~ 334 (656)
T 1k3i_A 263 DAK-----KTSLYDSSSDSWIPGP---DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKV 334 (656)
T ss_dssp STT-----CEEEEEGGGTEEEECC---CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCS
T ss_pred CCC-----ceEEecCcCCceeECC---CCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccc
Confidence 653 5999999999999997 89999999999999 9999999996444446889999999999999985432
Q ss_pred -CCCCCCCCceEEEEcCcEEEEEecCCCC----cccCcEEEEECCCCceEeeeecCCC----CCCCcceEEEE---ECCE
Q 012184 150 -TPPAPRYDHSAALHANRYLIVFGGCSHS----IFFNDLHVLDLQTNEWSQPEIKGDL----VTGRAGHAGIT---IDEN 217 (469)
Q Consensus 150 -~~p~~r~~~~~~~~~~~~l~v~GG~~~~----~~~~~i~~~d~~~~~W~~~~~~~~~----p~~r~~~~~~~---~~~~ 217 (469)
+++.++. ++++. .++++|+|||.++. ...+++++||+.++.|......... +.++..++++. ++++
T Consensus 335 ~p~~~~~~-~~~~~-~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~ 412 (656)
T 1k3i_A 335 NPMLTADK-QGLYR-SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGK 412 (656)
T ss_dssp GGGCCCCT-TGGGT-TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTE
T ss_pred cccccccc-cceee-cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCe
Confidence 2333333 23333 36779999997643 2467899999999998764322111 12344555553 4899
Q ss_pred EEEEecCCC---CCCcc---eEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCC-------CCC
Q 012184 218 WYIVGGGDN---NNGCQ---ETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG-------KYN 284 (469)
Q Consensus 218 l~v~GG~~~---~~~~~---d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~-------~~~ 284 (469)
|||+||.+. ....+ ++++||+.++.|..+. ....|.+|..|+++.+ ++++|||+||.+. ...
T Consensus 413 i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~mp~~R~~~~~~~l---~~g~i~v~GG~~~~~~~~~~~~~ 487 (656)
T 1k3i_A 413 ILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA--SNGLYFARTFHTSVVL---PDGSTFITGGQRRGIPFEDSTPV 487 (656)
T ss_dssp EEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC--TTCCSSCCBSCEEEEC---TTSCEEEECCBSBCCTTCCCSBC
T ss_pred EEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc--cCCCCCCcccCCeEEC---CCCCEEEECCcccCcCcCCCCcc
Confidence 999999643 22334 7889999999999876 1233567777764433 3579999999752 346
Q ss_pred ceEEEEECCCCCCCCccccCCCchhhcchh---hhHHHhhccc
Q 012184 285 NEVFVMRLKPRDIPRPKIFQSPAAAAAAAS---VTAAYALAKS 324 (469)
Q Consensus 285 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~---~~~~~~~gg~ 324 (469)
+++++||+.++.|..+..++.++..|.+++ ...+|++||.
T Consensus 488 ~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 488 FTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 789999999999999999999988886554 3568889885
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.97 E-value=2.3e-29 Score=264.87 Aligned_cols=263 Identities=10% Similarity=0.053 Sum_probs=197.4
Q ss_pred CEEEcccCCCcccCCceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcc
Q 012184 1 MLLRCSIRNYTLLEGVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSM 79 (469)
Q Consensus 1 l~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~ 79 (469)
||++||.... ++++||+.+++|+.++++ |.+|.+|+++++ +++||++||........+
T Consensus 256 lyv~GG~~~~-----~v~~yd~~t~~W~~~~~~----------------~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~ 314 (656)
T 1k3i_A 256 IVVTGGNDAK-----KTSLYDSSSDSWIPGPDM----------------QVARGYQSSATMSDGRVFTIGGSWSGGVFEK 314 (656)
T ss_dssp EEEECSSSTT-----CEEEEEGGGTEEEECCCC----------------SSCCSSCEEEECTTSCEEEECCCCCSSSCCC
T ss_pred EEEeCCCCCC-----ceEEecCcCCceeECCCC----------------CccccccceEEecCCeEEEEeCcccCCcccc
Confidence 6899997543 799999999999999876 779999999999 999999999654444678
Q ss_pred eEEEEECCCCeEEEeecCC--CCCCCCcceEEEEECCEEEEEeccCCCC---CccCcEEEEECCCCeEEEeeeCCCC---
Q 012184 80 IVRFIDLETNLCGVMETSG--KVPVARGGHSVTLVGSRLIIFGGEDRSR---KLLNDVHFLDLETMTWDAVEVTQTP--- 151 (469)
Q Consensus 80 ~~~~~d~~t~~W~~~~~~g--~~p~~r~~~~~~~~~~~lyi~GG~~~~~---~~~~~v~~~d~~t~~W~~~~~~g~~--- 151 (469)
++++||+.+++|+.++..+ +++.++.. +++..++++|+|||.+... ...+++++||+.++.|.........
T Consensus 315 ~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~ 393 (656)
T 1k3i_A 315 NGEVYSPSSKTWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRG 393 (656)
T ss_dssp CEEEEETTTTEEEEETTSCSGGGCCCCTT-GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTE
T ss_pred cceEeCCCCCcceeCCCcccccccccccc-ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccc
Confidence 8999999999999985432 34444443 5555789999999986431 2477899999999999765422111
Q ss_pred -CCCCCCceEEEE--cCcEEEEEecCCC---CcccC---cEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEE
Q 012184 152 -PAPRYDHSAALH--ANRYLIVFGGCSH---SIFFN---DLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIV 221 (469)
Q Consensus 152 -p~~r~~~~~~~~--~~~~l~v~GG~~~---~~~~~---~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~ 221 (469)
+.++..++++++ .+++||+|||... ...++ .+++||+.+++|..+. .+.+|.+|..|+++.+ +++|||+
T Consensus 394 ~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l~~g~i~v~ 472 (656)
T 1k3i_A 394 VAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFARTFHTSVVLPDGSTFIT 472 (656)
T ss_dssp ECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSCCBSCEEEECTTSCEEEE
T ss_pred cCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCCcccCCeEECCCCCEEEE
Confidence 223444555542 3788999999642 23344 7899999999999875 3578999999998888 8999999
Q ss_pred ecCCC------CCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccC-CC---CCceEEEEE
Q 012184 222 GGGDN------NNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN-GK---YNNEVFVMR 291 (469)
Q Consensus 222 GG~~~------~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~-~~---~~~~~~~~d 291 (469)
||.+. ....+++++||+.+++|+.++.+ |.+|.+|+++++. ++++|||+||.. +. ..-++.+|.
T Consensus 473 GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~----~~~R~~hs~a~ll--~dg~v~v~GG~~~~~~~~~~~~~e~~~ 546 (656)
T 1k3i_A 473 GGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN----SIVRVYHSISLLL--PDGRVFNGGGGLCGDCTTNHFDAQIFT 546 (656)
T ss_dssp CCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC----SSCCCTTEEEEEC--TTSCEEEEECCCCTTCSCCCCEEEEEE
T ss_pred CCcccCcCcCCCCcccceEEEcCCCCceeecCCC----CCccccccHhhcC--CCcEEEecCCCCCCCCCCCeeEEEEEe
Confidence 99653 23467899999999999998755 5678899866543 356899999953 21 223456666
Q ss_pred C
Q 012184 292 L 292 (469)
Q Consensus 292 ~ 292 (469)
+
T Consensus 547 P 547 (656)
T 1k3i_A 547 P 547 (656)
T ss_dssp C
T ss_pred C
Confidence 5
No 19
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.48 E-value=8.8e-05 Score=66.40 Aligned_cols=205 Identities=15% Similarity=0.019 Sum_probs=129.5
Q ss_pred CcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcE
Q 012184 53 MSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDV 132 (469)
Q Consensus 53 r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v 132 (469)
-+-+.....++.||...|..+. +.+..+|+.|++=..-. ++|....+.+++..+++||+... ..+.+
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~----S~v~~vD~~tgkv~~~~---~l~~~~fgeGi~~~~~~ly~ltw------~~~~v 87 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGR----SSVRKVDLETGRILQRA---EVPPPYFGAGIVAWRDRLIQLTW------RNHEG 87 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTS----CEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEES------SSSEE
T ss_pred cccccEEEECCEEEEECCCCCC----ceEEEEECCCCCEEEEE---eCCCCcceeEEEEeCCEEEEEEe------eCCEE
Confidence 3445667779999999886543 35999999999876554 46667778888999999999853 35679
Q ss_pred EEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEe-eeecCCCCCCC-cceE
Q 012184 133 HFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGDLVTGR-AGHA 210 (469)
Q Consensus 133 ~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~~p~~r-~~~~ 210 (469)
++||+.+.+-..-- +.+..+.+++.. +++||+.-| .+.++.+|+.+.+-.. +.+. ..+.+. ..-.
T Consensus 88 ~v~D~~tl~~~~ti-----~~~~~Gwglt~d-g~~L~vSdg------s~~l~~iDp~t~~~~~~I~V~-~~g~~~~~lNe 154 (243)
T 3mbr_X 88 FVYDLATLTPRARF-----RYPGEGWALTSD-DSHLYMSDG------TAVIRKLDPDTLQQVGSIKVT-AGGRPLDNLNE 154 (243)
T ss_dssp EEEETTTTEEEEEE-----ECSSCCCEEEEC-SSCEEEECS------SSEEEEECTTTCCEEEEEECE-ETTEECCCEEE
T ss_pred EEEECCcCcEEEEE-----eCCCCceEEeeC-CCEEEEECC------CCeEEEEeCCCCeEEEEEEEc-cCCccccccee
Confidence 99999998754432 223356666654 567888654 3679999999876433 3321 222332 2224
Q ss_pred EEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCC-----CCCCcceEEEEEcC-CcEEEEEeccCCCCC
Q 012184 211 GITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPL-----ASEGLSVCSAIIEG-EHHLVAFGGYNGKYN 284 (469)
Q Consensus 211 ~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~-----~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~ 284 (469)
+..+++.+|+--- ..+++.+.|+.+.+-...-.+.+..|. ...+..+--+..++ .+.|||.|-. .
T Consensus 155 Le~~~G~lyanvw-----~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~----w 225 (243)
T 3mbr_X 155 LEWVNGELLANVW-----LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR----W 225 (243)
T ss_dssp EEEETTEEEEEET-----TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT----C
T ss_pred eEEeCCEEEEEEC-----CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC----C
Confidence 5667888885432 256899999998765433332221111 11222333444554 6799988842 4
Q ss_pred ceEEEEEC
Q 012184 285 NEVFVMRL 292 (469)
Q Consensus 285 ~~~~~~d~ 292 (469)
..+|...+
T Consensus 226 p~~~~v~~ 233 (243)
T 3mbr_X 226 PMLYEIRL 233 (243)
T ss_dssp SEEEEEEE
T ss_pred CcEEEEEE
Confidence 45555544
No 20
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.37 E-value=0.0016 Score=61.56 Aligned_cols=229 Identities=10% Similarity=0.049 Sum_probs=134.3
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEE-Ee
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCG-VM 94 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~-~~ 94 (469)
.+-.||+.++++...-.... ...+.+...+.++..++++|+.... .+.+.++|+.+++-. .+
T Consensus 18 ~l~~~d~~t~~~~~~i~~~~-----------n~~~lg~~~~~i~~~~~~lyv~~~~------~~~v~viD~~t~~~~~~i 80 (328)
T 3dsm_A 18 TLSYYDPATCEVENEVFYRA-----------NGFKLGDVAQSMVIRDGIGWIVVNN------SHVIFAIDINTFKEVGRI 80 (328)
T ss_dssp EEEEEETTTTEEECSHHHHH-----------HSSCCBSCEEEEEEETTEEEEEEGG------GTEEEEEETTTCCEEEEE
T ss_pred eEEEEECCCCEEhhhhHhhh-----------cCcccCccceEEEEECCEEEEEEcC------CCEEEEEECcccEEEEEc
Confidence 78999999998764321100 0014455567777889999999652 245999999998863 34
Q ss_pred ecCCCCCCCCcceEEEE-ECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCC-CCCceEEEEcCcEEEEEe
Q 012184 95 ETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP-RYDHSAALHANRYLIVFG 172 (469)
Q Consensus 95 ~~~g~~p~~r~~~~~~~-~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~-r~~~~~~~~~~~~l~v~G 172 (469)
+ . .. .-+.++. -++++|+.... .+.+.++|+.+++-...-..|..... ..-+.++. .++++|+..
T Consensus 81 ~-~--~~---~p~~i~~~~~g~lyv~~~~------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~ 147 (328)
T 3dsm_A 81 T-G--FT---SPRYIHFLSDEKAYVTQIW------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNC 147 (328)
T ss_dssp E-C--CS---SEEEEEEEETTEEEEEEBS------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEE
T ss_pred C-C--CC---CCcEEEEeCCCeEEEEECC------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEc
Confidence 3 1 11 1223333 57899987642 45699999999886543322321100 01223333 477899874
Q ss_pred cCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCC-----cceEEEEECCCCcEEEe
Q 012184 173 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNG-----CQETIVLNMTKLAWSIL 246 (469)
Q Consensus 173 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~-----~~d~~~~d~~~~~W~~~ 246 (469)
- + ..+.+.++|+.+.+....-..+..| +.++.. ++++|+......... .+.++++|+.+.+....
T Consensus 148 ~-~---~~~~v~viD~~t~~~~~~i~~g~~p-----~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~ 218 (328)
T 3dsm_A 148 W-S---YQNRILKIDTETDKVVDELTIGIQP-----TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQ 218 (328)
T ss_dssp C-T---TCCEEEEEETTTTEEEEEEECSSCB-----CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEE
T ss_pred C-C---CCCEEEEEECCCCeEEEEEEcCCCc-----cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEE
Confidence 2 1 1367999999988765432222222 223332 577877754321111 26799999998876532
Q ss_pred ccCC-CCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECCCCCCC
Q 012184 247 TSVK-GRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLKPRDIP 298 (469)
Q Consensus 247 ~~~~-~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~~~~w~ 298 (469)
-.++ +.. ...+.+++ +..||+..+ .++++|+.+....
T Consensus 219 ~~~~~g~~--------p~~la~~~d~~~lyv~~~-------~v~~~d~~t~~~~ 257 (328)
T 3dsm_A 219 FKFKLGDW--------PSEVQLNGTRDTLYWINN-------DIWRMPVEADRVP 257 (328)
T ss_dssp EECCTTCC--------CEEEEECTTSCEEEEESS-------SEEEEETTCSSCC
T ss_pred EecCCCCC--------ceeEEEecCCCEEEEEcc-------EEEEEECCCCcee
Confidence 2222 111 12334444 568887654 6999999877653
No 21
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.36 E-value=0.00036 Score=66.08 Aligned_cols=226 Identities=8% Similarity=-0.026 Sum_probs=128.8
Q ss_pred ceEEEEccCCce-eeeeecccccCCccccCCCCCCCCCCcCeeeEE-ECCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184 16 VVMVFDLRSLAW-SNLRLETELDADKTEDSGLLEVLPPMSDHCMVK-WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 93 (469)
Q Consensus 16 ~~~~~d~~~~~W-~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~ 93 (469)
.+.++|+.+++- ..++.. ...+.++. .+++||+...+ .+.+.++|+.+++-..
T Consensus 65 ~v~viD~~t~~~~~~i~~~-------------------~~p~~i~~~~~g~lyv~~~~------~~~v~~iD~~t~~~~~ 119 (328)
T 3dsm_A 65 VIFAIDINTFKEVGRITGF-------------------TSPRYIHFLSDEKAYVTQIW------DYRIFIINPKTYEITG 119 (328)
T ss_dssp EEEEEETTTCCEEEEEECC-------------------SSEEEEEEEETTEEEEEEBS------CSEEEEEETTTTEEEE
T ss_pred EEEEEECcccEEEEEcCCC-------------------CCCcEEEEeCCCeEEEEECC------CCeEEEEECCCCeEEE
Confidence 788899988775 333221 11233334 67899998642 2459999999998654
Q ss_pred eecCCCCC-CCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEe
Q 012184 94 METSGKVP-VARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG 172 (469)
Q Consensus 94 ~~~~g~~p-~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~G 172 (469)
....|... ....-..++..+++||+..- . ..+.+.++|+.+++....-..+..| +.++...++++|+..
T Consensus 120 ~i~~g~~~~~~~~p~~i~~~~~~lyv~~~-~----~~~~v~viD~~t~~~~~~i~~g~~p-----~~i~~~~dG~l~v~~ 189 (328)
T 3dsm_A 120 YIECPDMDMESGSTEQMVQYGKYVYVNCW-S----YQNRILKIDTETDKVVDELTIGIQP-----TSLVMDKYNKMWTIT 189 (328)
T ss_dssp EEECTTCCTTTCBCCCEEEETTEEEEEEC-T----TCCEEEEEETTTTEEEEEEECSSCB-----CCCEECTTSEEEEEB
T ss_pred EEEcCCccccCCCcceEEEECCEEEEEcC-C----CCCEEEEEECCCCeEEEEEEcCCCc-----cceEEcCCCCEEEEE
Confidence 33222200 00012234447889998741 1 2456999999999876543333222 334444467788765
Q ss_pred cCCCCcc-----cCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEEE
Q 012184 173 GCSHSIF-----FNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSI 245 (469)
Q Consensus 173 G~~~~~~-----~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~ 245 (469)
....... .+.++++|+.+.+....- ..+.......++.. ++.+|+..+ .+++||+.+.....
T Consensus 190 ~~~~~~~~~~~~~~~v~~id~~t~~v~~~~---~~~~g~~p~~la~~~d~~~lyv~~~--------~v~~~d~~t~~~~~ 258 (328)
T 3dsm_A 190 DGGYEGSPYGYEAPSLYRIDAETFTVEKQF---KFKLGDWPSEVQLNGTRDTLYWINN--------DIWRMPVEADRVPV 258 (328)
T ss_dssp CCBCTTCSSCBCCCEEEEEETTTTEEEEEE---ECCTTCCCEEEEECTTSCEEEEESS--------SEEEEETTCSSCCS
T ss_pred CCCccCCccccCCceEEEEECCCCeEEEEE---ecCCCCCceeEEEecCCCEEEEEcc--------EEEEEECCCCceee
Confidence 3221111 368999999988765322 12222233344544 456777633 78999998776421
Q ss_pred eccCCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECC
Q 012184 246 LTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLK 293 (469)
Q Consensus 246 ~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~ 293 (469)
....+. .+.....+.+++ ++.|||....+-...+.+++||++
T Consensus 259 ~~~~~~------~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 259 RPFLEF------RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp SCSBCC------CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred eeeecC------CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 111110 022233455665 678998863222235679999987
No 22
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.22 E-value=0.00038 Score=62.82 Aligned_cols=192 Identities=9% Similarity=-0.028 Sum_probs=118.6
Q ss_pred eeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEE
Q 012184 56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFL 135 (469)
Q Consensus 56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~ 135 (469)
......++.||+..|..+ .+.+.++|+.|++=..-. +++....+.+++..+++||+... ..+.+++|
T Consensus 46 qGL~~~~~~LyestG~~g----~S~v~~vD~~Tgkv~~~~---~l~~~~FgeGit~~g~~ly~ltw------~~~~v~v~ 112 (262)
T 3nol_A 46 EGFFYRNGYFYESTGLNG----RSSIRKVDIESGKTLQQI---ELGKRYFGEGISDWKDKIVGLTW------KNGLGFVW 112 (262)
T ss_dssp EEEEEETTEEEEEEEETT----EEEEEEECTTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEES------SSSEEEEE
T ss_pred ceEEEECCEEEEECCCCC----CceEEEEECCCCcEEEEE---ecCCccceeEEEEeCCEEEEEEe------eCCEEEEE
Confidence 455555899999988654 245999999999865544 35556667778889999999854 25679999
Q ss_pred ECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEe-eeecC-CCCCCCcceEEEE
Q 012184 136 DLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKG-DLVTGRAGHAGIT 213 (469)
Q Consensus 136 d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~-~~p~~r~~~~~~~ 213 (469)
|+.+.+-..-- +.+-.+.+++.. ++.||+.-| .+.++.+|+.+.+-.. +.+.. ..|..... .+..
T Consensus 113 D~~t~~~~~ti-----~~~~eG~glt~d-g~~L~~SdG------s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN-ELe~ 179 (262)
T 3nol_A 113 NIRNLRQVRSF-----NYDGEGWGLTHN-DQYLIMSDG------TPVLRFLDPESLTPVRTITVTAHGEELPELN-ELEW 179 (262)
T ss_dssp ETTTCCEEEEE-----ECSSCCCCEEEC-SSCEEECCS------SSEEEEECTTTCSEEEEEECEETTEECCCEE-EEEE
T ss_pred ECccCcEEEEE-----ECCCCceEEecC-CCEEEEECC------CCeEEEEcCCCCeEEEEEEeccCCccccccc-eeEE
Confidence 99988754322 222355666654 566888644 3679999999876433 33211 11222211 3455
Q ss_pred ECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCC----CCCCcceEEEEEcC-CcEEEEEec
Q 012184 214 IDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPL----ASEGLSVCSAIIEG-EHHLVAFGG 278 (469)
Q Consensus 214 ~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~----~r~~~s~~~~~~~~-~~~l~v~GG 278 (469)
.++.||+--- ..+++.+.|+.+.+-...-.+++..|. ......+--+..++ .+.|||.|-
T Consensus 180 ~~G~lyan~w-----~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 180 VDGEIFANVW-----QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp ETTEEEEEET-----TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ECCEEEEEEc-----cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 6888886421 246899999998875543333321111 01122233344444 678998884
No 23
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.01 E-value=0.0012 Score=59.11 Aligned_cols=139 Identities=17% Similarity=0.073 Sum_probs=92.9
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME 95 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~ 95 (469)
.+..+|+.+++=..-.+. |...++..++..+++||+... ..+.+++||+.|.+-..--
T Consensus 44 ~v~~vD~~tgkv~~~~~l----------------~~~~fgeGi~~~~~~ly~ltw------~~~~v~v~D~~tl~~~~ti 101 (243)
T 3mbr_X 44 SVRKVDLETGRILQRAEV----------------PPPYFGAGIVAWRDRLIQLTW------RNHEGFVYDLATLTPRARF 101 (243)
T ss_dssp EEEEEETTTCCEEEEEEC----------------CTTCCEEEEEEETTEEEEEES------SSSEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCCEEEEEeC----------------CCCcceeEEEEeCCEEEEEEe------eCCEEEEEECCcCcEEEEE
Confidence 789999999987665554 445577888899999999853 2355999999998754332
Q ss_pred cCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCce-EEEEcCcEEEEEecC
Q 012184 96 TSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS-AALHANRYLIVFGGC 174 (469)
Q Consensus 96 ~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~-~~~~~~~~l~v~GG~ 174 (469)
|.+..+.+++.-++.||+--| .+.++.+|+.|.+-..--..+..+.+..... +..+ +++||+-- +
T Consensus 102 -----~~~~~Gwglt~dg~~L~vSdg-------s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv-w 167 (243)
T 3mbr_X 102 -----RYPGEGWALTSDDSHLYMSDG-------TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV-W 167 (243)
T ss_dssp -----ECSSCCCEEEECSSCEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE-T
T ss_pred -----eCCCCceEEeeCCCEEEEECC-------CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEE-C
Confidence 222357777766778888643 4569999999977543322222233332222 2333 77788532 1
Q ss_pred CCCcccCcEEEEECCCCceE
Q 012184 175 SHSIFFNDLHVLDLQTNEWS 194 (469)
Q Consensus 175 ~~~~~~~~i~~~d~~~~~W~ 194 (469)
..|+|.+.|+.+++-.
T Consensus 168 ----~s~~I~vIDp~tG~V~ 183 (243)
T 3mbr_X 168 ----LTSRIARIDPASGKVV 183 (243)
T ss_dssp ----TTTEEEEECTTTCBEE
T ss_pred ----CCCeEEEEECCCCCEE
Confidence 2478999999998743
No 24
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.96 E-value=0.0066 Score=55.17 Aligned_cols=205 Identities=14% Similarity=-0.015 Sum_probs=120.4
Q ss_pred eeeEEEC-CEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEE
Q 012184 56 HCMVKWG-TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHF 134 (469)
Q Consensus 56 ~~~~~~~-~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~ 134 (469)
+.++..+ +.||+..|... .+.+.++|+.|++=..-. +++....+.+++..+++||+..- ..+.+++
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~----~s~v~~iD~~tg~v~~~i---~l~~~~fgeGi~~~g~~lyv~t~------~~~~v~v 90 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG----RSSVRQVALQTGKVENIH---KMDDSYFGEGLTLLNEKLYQVVW------LKNIGFI 90 (266)
T ss_dssp EEEEECSTTEEEEEECSTT----TCEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEET------TCSEEEE
T ss_pred ccEEEeCCCeEEEECCCCC----CCEEEEEECCCCCEEEEE---ecCCCcceEEEEEeCCEEEEEEe------cCCEEEE
Confidence 5566555 79999877432 245999999999865543 23444556677778899999843 3567999
Q ss_pred EECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEe-eeecCCCCCCC-cceEEE
Q 012184 135 LDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGDLVTGR-AGHAGI 212 (469)
Q Consensus 135 ~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~~p~~r-~~~~~~ 212 (469)
||+.+.+-..--+.| .| .+.+++. +++++|+.-| .+.++.+|+.+.+-.. +.+ +..+.+. ....+.
T Consensus 91 iD~~t~~v~~~i~~g-~~---~g~glt~-Dg~~l~vs~g------s~~l~viD~~t~~v~~~I~V-g~~~~p~~~~nele 158 (266)
T 2iwa_A 91 YDRRTLSNIKNFTHQ-MK---DGWGLAT-DGKILYGSDG------TSILYEIDPHTFKLIKKHNV-KYNGHRVIRLNELE 158 (266)
T ss_dssp EETTTTEEEEEEECC-SS---SCCEEEE-CSSSEEEECS------SSEEEEECTTTCCEEEEEEC-EETTEECCCEEEEE
T ss_pred EECCCCcEEEEEECC-CC---CeEEEEE-CCCEEEEECC------CCeEEEEECCCCcEEEEEEE-CCCCcccccceeEE
Confidence 999988654332223 12 2344444 3566888643 3789999998876433 332 2222221 122444
Q ss_pred EECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCC-----CCCCCcceEEEEEcC-CcEEEEEeccCCCCCce
Q 012184 213 TIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNP-----LASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNE 286 (469)
Q Consensus 213 ~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p-----~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~ 286 (469)
..++.+|+--. ..+++.+.|+.+.+-...-.+++..+ .........-+..++ .+++||.|+.. +.
T Consensus 159 ~~dg~lyvn~~-----~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~----~~ 229 (266)
T 2iwa_A 159 YINGEVWANIW-----QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW----PK 229 (266)
T ss_dssp EETTEEEEEET-----TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC----SE
T ss_pred EECCEEEEecC-----CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCC----Ce
Confidence 55888886532 24689999998876433222211000 000111222333443 57899998754 45
Q ss_pred EEEEECCC
Q 012184 287 VFVMRLKP 294 (469)
Q Consensus 287 ~~~~d~~~ 294 (469)
++..++..
T Consensus 230 v~~i~l~~ 237 (266)
T 2iwa_A 230 LFEIKLHL 237 (266)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEec
Confidence 77777644
No 25
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.85 E-value=0.0009 Score=60.44 Aligned_cols=189 Identities=10% Similarity=-0.063 Sum_probs=114.6
Q ss_pred eeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEE
Q 012184 56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFL 135 (469)
Q Consensus 56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~ 135 (469)
+.....++.||+..|..+. +..+|+.|++=..-. +|....+.+++..+++||+... ..+.+++|
T Consensus 58 qGL~~~~~~Ly~stG~~g~------v~~iD~~Tgkv~~~~----l~~~~FgeGit~~g~~Ly~ltw------~~~~v~V~ 121 (268)
T 3nok_A 58 QGLVFHQGHFFESTGHQGT------LRQLSLESAQPVWME----RLGNIFAEGLASDGERLYQLTW------TEGLLFTW 121 (268)
T ss_dssp EEEEEETTEEEEEETTTTE------EEECCSSCSSCSEEE----ECTTCCEEEEEECSSCEEEEES------SSCEEEEE
T ss_pred ceEEEECCEEEEEcCCCCE------EEEEECCCCcEEeEE----CCCCcceeEEEEeCCEEEEEEc------cCCEEEEE
Confidence 5666679999999886432 889999998743322 2334456678888899999854 25569999
Q ss_pred ECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEe-eeecCCCCCCCcc-eEEEE
Q 012184 136 DLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGDLVTGRAG-HAGIT 213 (469)
Q Consensus 136 d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~~p~~r~~-~~~~~ 213 (469)
|+.+.+-..--+ .+..+.+++.. ++.||+.-| .+.++.+|+.+.+-.. +.+. ..+.+... -.+..
T Consensus 122 D~~Tl~~~~ti~-----~~~eGwGLt~D-g~~L~vSdG------s~~l~~iDp~T~~v~~~I~V~-~~g~~v~~lNeLe~ 188 (268)
T 3nok_A 122 SGMPPQRERTTR-----YSGEGWGLCYW-NGKLVRSDG------GTMLTFHEPDGFALVGAVQVK-LRGQPVELINELEC 188 (268)
T ss_dssp ETTTTEEEEEEE-----CSSCCCCEEEE-TTEEEEECS------SSEEEEECTTTCCEEEEEECE-ETTEECCCEEEEEE
T ss_pred ECCcCcEEEEEe-----CCCceeEEecC-CCEEEEECC------CCEEEEEcCCCCeEEEEEEeC-CCCcccccccccEE
Confidence 999987654322 22345666655 667999754 3689999999876443 3221 22222211 23455
Q ss_pred ECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCC---CC--CCCCCcceEEEEEcC-CcEEEEEec
Q 012184 214 IDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGR---NP--LASEGLSVCSAIIEG-EHHLVAFGG 278 (469)
Q Consensus 214 ~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~---~p--~~r~~~s~~~~~~~~-~~~l~v~GG 278 (469)
.++.||+-- ...+++.+.|+.+.+-...-.+.+. .+ .......+--+..++ .+.|||.|-
T Consensus 189 ~dG~lyanv-----w~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 189 ANGVIYANI-----WHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp ETTEEEEEE-----TTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred eCCEEEEEE-----CCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 688888532 1246899999998765433222210 00 011122333444554 678888774
No 26
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.82 E-value=0.0023 Score=57.67 Aligned_cols=168 Identities=11% Similarity=-0.041 Sum_probs=101.0
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME 95 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~ 95 (469)
.+..+|+.+++=..--+. +...++..++..+++||+... ..+.+++||+.|.+-..--
T Consensus 66 ~v~~vD~~Tgkv~~~~~l----------------~~~~FgeGit~~g~~ly~ltw------~~~~v~v~D~~t~~~~~ti 123 (262)
T 3nol_A 66 SIRKVDIESGKTLQQIEL----------------GKRYFGEGISDWKDKIVGLTW------KNGLGFVWNIRNLRQVRSF 123 (262)
T ss_dssp EEEEECTTTCCEEEEEEC----------------CTTCCEEEEEEETTEEEEEES------SSSEEEEEETTTCCEEEEE
T ss_pred eEEEEECCCCcEEEEEec----------------CCccceeEEEEeCCEEEEEEe------eCCEEEEEECccCcEEEEE
Confidence 788999999986555544 334567778889999999944 2345999999998754322
Q ss_pred cCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCc-eEEEEcCcEEEEEecC
Q 012184 96 TSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH-SAALHANRYLIVFGGC 174 (469)
Q Consensus 96 ~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~-~~~~~~~~~l~v~GG~ 174 (469)
+.+-.+.+++.-++.||+.-| .+.++.+|+.|.+-..--..+....+...- -+... +++||+--
T Consensus 124 -----~~~~eG~glt~dg~~L~~SdG-------s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~-- 188 (262)
T 3nol_A 124 -----NYDGEGWGLTHNDQYLIMSDG-------TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANV-- 188 (262)
T ss_dssp -----ECSSCCCCEEECSSCEEECCS-------SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEE--
T ss_pred -----ECCCCceEEecCCCEEEEECC-------CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEE--
Confidence 112266677766667887533 456999999987644322111111221111 13334 77788632
Q ss_pred CCCcccCcEEEEECCCCceEeeeecCCC--------CCCCcceEEEEE--CCEEEEEec
Q 012184 175 SHSIFFNDLHVLDLQTNEWSQPEIKGDL--------VTGRAGHAGITI--DENWYIVGG 223 (469)
Q Consensus 175 ~~~~~~~~i~~~d~~~~~W~~~~~~~~~--------p~~r~~~~~~~~--~~~l~v~GG 223 (469)
-..+.|.+.|+.+++-...-..+.+ +..-....++.. .+.+||.|-
T Consensus 189 ---w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 189 ---WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp ---TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ---ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 1247899999999875432211111 111122345554 367888765
No 27
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.79 E-value=0.0049 Score=60.06 Aligned_cols=226 Identities=13% Similarity=0.068 Sum_probs=118.2
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 94 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~ 94 (469)
.++.+|+.++.+..+..... .....+++.. ++.+|+.++... .+..+|+.++.....
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~----------------~~~~~~~~~s~~~~~~~~~~~~~------~i~~~d~~~g~~~~~ 159 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKT----------------GFQPKSVRFIDNTRLAIPLLEDE------GMDVLDINSGQTVRL 159 (433)
T ss_dssp CEEECCBTTCSEEEEEEEEC----------------SSCBCCCEESSSSEEEEEBTTSS------SEEEEETTTCCEEEE
T ss_pred EEEEECCCCCcceEEEEEcC----------------CCCceEEEEeCCCeEEEEeCCCC------eEEEEECCCCeEeee
Confidence 57888887776666655421 1111222222 778888776432 399999999887654
Q ss_pred ecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEc-CcEEEEE
Q 012184 95 ETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVF 171 (469)
Q Consensus 95 ~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~~l~v~ 171 (469)
...+..........++.+ ++.+|+.|+.+ ..+.+||+.+.+....-.. ....-.+++... ++.+|+.
T Consensus 160 ~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d------~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~ 229 (433)
T 3bws_A 160 SPPEKYKKKLGFVETISIPEHNELWVSQMQA------NAVHVFDLKTLAYKATVDL----TGKWSKILLYDPIRDLVYCS 229 (433)
T ss_dssp CCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG------TEEEEEETTTCCEEEEEEC----SSSSEEEEEEETTTTEEEEE
T ss_pred cCcccccccCCceeEEEEcCCCEEEEEECCC------CEEEEEECCCceEEEEEcC----CCCCeeEEEEcCCCCEEEEE
Confidence 321111111122223334 56788777643 4589999988765433211 111112333333 3456666
Q ss_pred ecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCC---CcceEEEEECCCCcEEEec
Q 012184 172 GGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNN---GCQETIVLNMTKLAWSILT 247 (469)
Q Consensus 172 GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~---~~~d~~~~d~~~~~W~~~~ 247 (469)
++.+ +.+++||+.+.+..... +.......++.. ++..+++++..... .-..+.+||+.+..-....
T Consensus 230 ~~~~-----~~i~~~d~~~~~~~~~~-----~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~ 299 (433)
T 3bws_A 230 NWIS-----EDISVIDRKTKLEIRKT-----DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI 299 (433)
T ss_dssp ETTT-----TEEEEEETTTTEEEEEC-----CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE
T ss_pred ecCC-----CcEEEEECCCCcEEEEe-----cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec
Confidence 5433 46999999887654322 111122233333 34455554432211 1346889999877544332
Q ss_pred cCCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECCCCC
Q 012184 248 SVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLKPRD 296 (469)
Q Consensus 248 ~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~~~~ 296 (469)
..+. ....+...+ +..+|+.++.++ .+.+||+.+..
T Consensus 300 ~~~~---------~~~~~~~~~~g~~l~~~~~~~~----~v~v~d~~~~~ 336 (433)
T 3bws_A 300 GPPG---------NKRHIVSGNTENKIYVSDMCCS----KIEVYDLKEKK 336 (433)
T ss_dssp EEEE---------CEEEEEECSSTTEEEEEETTTT----EEEEEETTTTE
T ss_pred cCCC---------CcceEEECCCCCEEEEEecCCC----EEEEEECCCCc
Confidence 1111 111223344 347877766543 58888887543
No 28
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.76 E-value=0.037 Score=54.16 Aligned_cols=198 Identities=15% Similarity=0.176 Sum_probs=109.1
Q ss_pred eEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEEC
Q 012184 58 MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDL 137 (469)
Q Consensus 58 ~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~ 137 (469)
++..++..++.|+.++ .+..||+.+..-...- ........++.+++..++.|+.++ .+.+||+
T Consensus 244 ~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~l~~~~~d~------~i~i~d~ 306 (445)
T 2ovr_B 244 CVQYDGRRVVSGAYDF------MVKVWDPETETCLHTL-----QGHTNRVYSLQFDGIHVVSGSLDT------SIRVWDV 306 (445)
T ss_dssp EEEECSSCEEEEETTS------CEEEEEGGGTEEEEEE-----CCCSSCEEEEEECSSEEEEEETTS------CEEEEET
T ss_pred EEEECCCEEEEEcCCC------EEEEEECCCCcEeEEe-----cCCCCceEEEEECCCEEEEEeCCC------eEEEEEC
Confidence 3444667777776432 2888898877543322 111122333444776677776543 4899999
Q ss_pred CCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCE
Q 012184 138 ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN 217 (469)
Q Consensus 138 ~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~ 217 (469)
.+.+-...-. + ...........++ +++.|+.+ ..+.+||+.+.+-...- .+. .........+.+++.
T Consensus 307 ~~~~~~~~~~-~----~~~~v~~~~~~~~-~l~~~~~d-----g~i~vwd~~~~~~~~~~-~~~-~~~~~~v~~~~~~~~ 373 (445)
T 2ovr_B 307 ETGNCIHTLT-G----HQSLTSGMELKDN-ILVSGNAD-----STVKIWDIKTGQCLQTL-QGP-NKHQSAVTCLQFNKN 373 (445)
T ss_dssp TTCCEEEEEC-C----CCSCEEEEEEETT-EEEEEETT-----SCEEEEETTTCCEEEEE-CST-TSCSSCEEEEEECSS
T ss_pred CCCCEEEEEc-C----CcccEEEEEEeCC-EEEEEeCC-----CeEEEEECCCCcEEEEE-ccC-CCCCCCEEEEEECCC
Confidence 8876433221 1 1111223334354 56666644 45889998776533221 111 111222233445677
Q ss_pred EEEEecCCCCCCcceEEEEECCCCcEEEec-cCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184 218 WYIVGGGDNNNGCQETIVLNMTKLAWSILT-SVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP 294 (469)
Q Consensus 218 l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~-~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~ 294 (469)
+++.|+.+ ..+.+||+.+......- ..... .....+..+...+++.++++|+.++.....+++||.+.
T Consensus 374 ~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 374 FVITSSDD-----GTVKLWDLKTGEFIRNLVTLESG----GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEEETT-----SEEEEEETTTCCEEEEEEECTTG----GGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEEEeCC-----CeEEEEECCCCceeeeeeccccC----CCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 77777743 36889999887654321 11100 01123344455667788899998887667788888764
No 29
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.68 E-value=0.028 Score=53.72 Aligned_cols=170 Identities=10% Similarity=0.056 Sum_probs=94.6
Q ss_pred ceEEEEccCCc--eeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe--E
Q 012184 16 VVMVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--C 91 (469)
Q Consensus 16 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W 91 (469)
.++.||+.+++ |+....... ...+...+.++.++.||+. .. ...++.||+.+++ |
T Consensus 154 ~l~~~d~~tG~~~W~~~~~~~~--------------~~~~~~~~~~~~~~~v~~g-~~------~g~l~~~d~~tG~~~w 212 (376)
T 3q7m_A 154 QLQALNEADGAVKWTVNLDMPS--------------LSLRGESAPTTAFGAAVVG-GD------NGRVSAVLMEQGQMIW 212 (376)
T ss_dssp EEEEEETTTCCEEEEEECCC-------------------CCCCCCEEETTEEEEC-CT------TTEEEEEETTTCCEEE
T ss_pred eEEEEECCCCcEEEEEeCCCCc--------------eeecCCCCcEEECCEEEEE-cC------CCEEEEEECCCCcEEE
Confidence 57888887765 765433210 1122233445557777663 21 1248999998775 7
Q ss_pred EEeecCCCCCCCC--------cceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEeeeCCCCCCCCCCceEE
Q 012184 92 GVMETSGKVPVAR--------GGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAA 161 (469)
Q Consensus 92 ~~~~~~g~~p~~r--------~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~ 161 (469)
..-. ..|... .....+..++.+|+.+. ...++.||+.+++ |.... +. ....
T Consensus 213 ~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~-------~g~l~~~d~~tG~~~w~~~~-----~~----~~~~ 273 (376)
T 3q7m_A 213 QQRI---SQATGSTEIDRLSDVDTTPVVVNGVVFALAY-------NGNLTALDLRSGQIMWKREL-----GS----VNDF 273 (376)
T ss_dssp EEEC---CC-----------CCCCCCEEETTEEEEECT-------TSCEEEEETTTCCEEEEECC-----CC----EEEE
T ss_pred EEec---ccCCCCcccccccccCCCcEEECCEEEEEec-------CcEEEEEECCCCcEEeeccC-----CC----CCCc
Confidence 6543 111111 22333456778887531 2358999998774 65431 11 2223
Q ss_pred EEcCcEEEEEecCCCCcccCcEEEEECCCCc--eEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECC
Q 012184 162 LHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMT 239 (469)
Q Consensus 162 ~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~ 239 (469)
.+.++.+|+... ...+++||+.+++ |.... ...+...+.+..++.+|+... ...++.||+.
T Consensus 274 ~~~~~~l~~~~~------~g~l~~~d~~tG~~~w~~~~-----~~~~~~~~~~~~~~~l~v~~~------~g~l~~~d~~ 336 (376)
T 3q7m_A 274 IVDGNRIYLVDQ------NDRVMALTIDGGVTLWTQSD-----LLHRLLTSPVLYNGNLVVGDS------EGYLHWINVE 336 (376)
T ss_dssp EEETTEEEEEET------TCCEEEEETTTCCEEEEECT-----TTTSCCCCCEEETTEEEEECT------TSEEEEEETT
T ss_pred eEECCEEEEEcC------CCeEEEEECCCCcEEEeecc-----cCCCcccCCEEECCEEEEEeC------CCeEEEEECC
Confidence 334777888653 2469999998776 76521 122233344556788777632 2368999988
Q ss_pred CCc
Q 012184 240 KLA 242 (469)
Q Consensus 240 ~~~ 242 (469)
+.+
T Consensus 337 tG~ 339 (376)
T 3q7m_A 337 DGR 339 (376)
T ss_dssp TCC
T ss_pred CCc
Confidence 765
No 30
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.67 E-value=0.017 Score=52.51 Aligned_cols=181 Identities=9% Similarity=-0.106 Sum_probs=106.2
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME 95 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~ 95 (469)
.+..+|+.+++=..--+. +....+..++..+++||+..- ..+.+++||+.+.+=..--
T Consensus 45 ~v~~iD~~tg~v~~~i~l----------------~~~~fgeGi~~~g~~lyv~t~------~~~~v~viD~~t~~v~~~i 102 (266)
T 2iwa_A 45 SVRQVALQTGKVENIHKM----------------DDSYFGEGLTLLNEKLYQVVW------LKNIGFIYDRRTLSNIKNF 102 (266)
T ss_dssp EEEEEETTTCCEEEEEEC----------------CTTCCEEEEEEETTEEEEEET------TCSEEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEec----------------CCCcceEEEEEeCCEEEEEEe------cCCEEEEEECCCCcEEEEE
Confidence 789999999885444333 233456677888999999943 3345999999988643322
Q ss_pred cCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCC-ceEEEEcCcEEEEEecC
Q 012184 96 TSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD-HSAALHANRYLIVFGGC 174 (469)
Q Consensus 96 ~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~-~~~~~~~~~~l~v~GG~ 174 (469)
+.| . ..+.+++.-++++|+.-| .+.++.+|+.+.+-..--..|..+.|... ..+... ++++|+--.
T Consensus 103 ~~g-~---~~g~glt~Dg~~l~vs~g-------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~- 169 (266)
T 2iwa_A 103 THQ-M---KDGWGLATDGKILYGSDG-------TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIW- 169 (266)
T ss_dssp ECC-S---SSCCEEEECSSSEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET-
T ss_pred ECC-C---CCeEEEEECCCEEEEECC-------CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecC-
Confidence 222 1 234555555667887632 56799999999775443322322223221 233334 678886432
Q ss_pred CCCcccCcEEEEECCCCceEe-eeecCC--------CCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCC
Q 012184 175 SHSIFFNDLHVLDLQTNEWSQ-PEIKGD--------LVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTK 240 (469)
Q Consensus 175 ~~~~~~~~i~~~d~~~~~W~~-~~~~~~--------~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~ 240 (469)
..+.|.+.|+.+++-.. +...+. .+..-....++.. ++.+||.|+. .+.++..++..
T Consensus 170 ----~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~-----~~~v~~i~l~~ 237 (266)
T 2iwa_A 170 ----QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL-----WPKLFEIKLHL 237 (266)
T ss_dssp ----TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT-----CSEEEEEEEEE
T ss_pred ----CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC-----CCeEEEEEEec
Confidence 24789999999886432 211110 0111122344544 3578888874 34566666543
No 31
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.011 Score=56.07 Aligned_cols=233 Identities=11% Similarity=0.072 Sum_probs=116.4
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEEC----CEEEEEccccCCCCCcceEEEEECCCCeE
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG----TKLLILGGHYKKSSDSMIVRFIDLETNLC 91 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~----~~iy~~GG~~~~~~~~~~~~~~d~~t~~W 91 (469)
.+..||.....+..+.... .......++.+. +.+++.|+.++ .+..||+.++.|
T Consensus 34 ~i~iw~~~~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~~~l~s~~~dg------~v~iwd~~~~~~ 91 (379)
T 3jrp_A 34 TIKIFEVEGETHKLIDTLT----------------GHEGPVWRVDWAHPKFGTILASCSYDG------KVLIWKEENGRW 91 (379)
T ss_dssp CEEEEEEETTEEEEEEEEC----------------CCSSCEEEEEECCGGGCSEEEEEETTS------CEEEEEEETTEE
T ss_pred cEEEEecCCCcceeeeEec----------------CCCCcEEEEEeCCCCCCCEEEEeccCC------EEEEEEcCCCce
Confidence 6788888877776666542 112223333332 56777776543 288899999988
Q ss_pred EEeecCCCCCCCCcceEEEEEC----CEEEEEeccCCCCCccCcEEEEECCCCeE-EEeeeCCCCCCCCCCceEEEEc--
Q 012184 92 GVMETSGKVPVARGGHSVTLVG----SRLIIFGGEDRSRKLLNDVHFLDLETMTW-DAVEVTQTPPAPRYDHSAALHA-- 164 (469)
Q Consensus 92 ~~~~~~g~~p~~r~~~~~~~~~----~~lyi~GG~~~~~~~~~~v~~~d~~t~~W-~~~~~~g~~p~~r~~~~~~~~~-- 164 (469)
..+... ........++.+. +.+++.|+.+ ..+.+||+.+... ......+ ....-.++....
T Consensus 92 ~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~---~~~~v~~~~~~~~~ 159 (379)
T 3jrp_A 92 SQIAVH---AVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDA---HAIGVNSASWAPAT 159 (379)
T ss_dssp EEEEEE---CCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCTTSCCCEEEEEC---CTTCEEEEEECCCC
T ss_pred eEeeee---cCCCcceEEEEeCCCCCCCEEEEecCC------CcEEEEecCCCCceeeEEecC---CCCceEEEEEcCcc
Confidence 776632 2222223333332 4566676643 3488888876632 1111101 011111222222
Q ss_pred -----------CcEEEEEecCCCCcccCcEEEEECCCCc--eEeeeecCCCCCCCcceEEEEE-C---CEEEEEecCCCC
Q 012184 165 -----------NRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITI-D---ENWYIVGGGDNN 227 (469)
Q Consensus 165 -----------~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~-~---~~l~v~GG~~~~ 227 (469)
++.+++.|+.++ .+.+||+.+.. +..+..... ....-.+++.. + +.+++.|+.++
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~l~s~~~dg- 231 (379)
T 3jrp_A 160 IEEDGEHNGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQDR- 231 (379)
T ss_dssp ----------CTTCEEEEEETTS-----CEEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEETTS-
T ss_pred ccccccccCCCCCCEEEEEeCCC-----eEEEEEecCCCcceeeEEEEec--ccCcEeEEEECCCCCCCCeEEEEeCCC-
Confidence 355777776543 57888876543 444332111 11111233333 3 57777777543
Q ss_pred CCcceEEEEECCCCc--EEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECC-CCCCCCcccc
Q 012184 228 NGCQETIVLNMTKLA--WSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK-PRDIPRPKIF 303 (469)
Q Consensus 228 ~~~~d~~~~d~~~~~--W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~-~~~w~~~~~~ 303 (469)
.+.+||+.+.. +..... .. ......+..+...+++.++++|+.++. +.+|++. ...|.....+
T Consensus 232 ----~i~iwd~~~~~~~~~~~~~-~~----~~~~~~v~~~~~s~~g~~l~~~~~dg~----i~iw~~~~~~~~~~~~~~ 297 (379)
T 3jrp_A 232 ----TCIIWTQDNEQGPWKKTLL-KE----EKFPDVLWRASWSLSGNVLALSGGDNK----VTLWKENLEGKWEPAGEV 297 (379)
T ss_dssp ----CEEEEEESSTTSCCEEEES-SS----SCCSSCEEEEEECSSSCCEEEEESSSS----EEEEEEEETTEEEEEEEE
T ss_pred ----EEEEEeCCCCCccceeeee-cc----ccCCCcEEEEEEcCCCCEEEEecCCCc----EEEEeCCCCCccccccce
Confidence 46777776642 221111 10 001123344445556667777776553 6666665 3455544443
No 32
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.57 E-value=0.017 Score=55.25 Aligned_cols=214 Identities=16% Similarity=0.101 Sum_probs=113.4
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 93 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~ 93 (469)
.+.++|+.+++-...-... ..-++++.. +..||+.|+.. ..+.++|+.+++...
T Consensus 13 ~v~v~d~~~~~~~~~~~~~------------------~~~~~~~~s~dg~~l~~~~~~d------~~i~v~d~~~~~~~~ 68 (391)
T 1l0q_A 13 NISVIDVTSNKVTATIPVG------------------SNPMGAVISPDGTKVYVANAHS------NDVSIIDTATNNVIA 68 (391)
T ss_dssp EEEEEETTTTEEEEEEECS------------------SSEEEEEECTTSSEEEEEEGGG------TEEEEEETTTTEEEE
T ss_pred EEEEEECCCCeEEEEeecC------------------CCcceEEECCCCCEEEEECCCC------CeEEEEECCCCeEEE
Confidence 7889999887654433221 111223322 45677776543 249999999988655
Q ss_pred eecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcC-cEEEE
Q 012184 94 METSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHAN-RYLIV 170 (469)
Q Consensus 94 ~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~~l~v 170 (469)
.... +. .-..++.. +..||+.|.. .+.+++||+.+++.......+ .....++...+ +.+|+
T Consensus 69 ~~~~---~~--~v~~~~~spdg~~l~~~~~~------~~~v~v~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~ 132 (391)
T 1l0q_A 69 TVPA---GS--SPQGVAVSPDGKQVYVTNMA------SSTLSVIDTTSNTVAGTVKTG-----KSPLGLALSPDGKKLYV 132 (391)
T ss_dssp EEEC---SS--SEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEECS-----SSEEEEEECTTSSEEEE
T ss_pred EEEC---CC--CccceEECCCCCEEEEEECC------CCEEEEEECCCCeEEEEEeCC-----CCcceEEECCCCCEEEE
Confidence 4422 11 11222222 3356665432 245999999998765543221 11233333333 45767
Q ss_pred EecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEEEecc
Q 012184 171 FGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 248 (469)
Q Consensus 171 ~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~ 248 (469)
.++.+ +.++++|+.+.+.......+ .....++.. +..+|+.++.+ ..+.+||+.+........
T Consensus 133 ~~~~~-----~~v~~~d~~~~~~~~~~~~~-----~~~~~~~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~ 197 (391)
T 1l0q_A 133 TNNGD-----KTVSVINTVTKAVINTVSVG-----RSPKGIAVTPDGTKVYVANFDS-----MSISVIDTVTNSVIDTVK 197 (391)
T ss_dssp EETTT-----TEEEEEETTTTEEEEEEECC-----SSEEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEE
T ss_pred EeCCC-----CEEEEEECCCCcEEEEEecC-----CCcceEEECCCCCEEEEEeCCC-----CEEEEEECCCCeEEEEEe
Confidence 66533 47999999888765433211 112233333 23566665532 368999998876543322
Q ss_pred CCCCCCCCCCCcceEEEEEcCC-cEEEEEeccCCCCCceEEEEECCCC
Q 012184 249 VKGRNPLASEGLSVCSAIIEGE-HHLVAFGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 249 ~~~~~p~~r~~~s~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~d~~~~ 295 (469)
.. .....+...++ ..|++.+. + .....+++||+.+.
T Consensus 198 ~~---------~~~~~~~~~~~g~~l~~~~~-~-~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 198 VE---------AAPSGIAVNPEGTKAYVTNV-D-KYFNTVSMIDTGTN 234 (391)
T ss_dssp CS---------SEEEEEEECTTSSEEEEEEE-C-SSCCEEEEEETTTT
T ss_pred cC---------CCccceEECCCCCEEEEEec-C-cCCCcEEEEECCCC
Confidence 11 11223334443 45555442 1 12346888888654
No 33
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.56 E-value=0.016 Score=56.42 Aligned_cols=228 Identities=9% Similarity=-0.057 Sum_probs=113.1
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 93 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~ 93 (469)
.+..||+.+++.......... .........+.+ ++.+|+.|+.+ ..+.+||+.+++...
T Consensus 145 ~i~~~d~~~g~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~s~~~d------~~v~~~d~~~~~~~~ 205 (433)
T 3bws_A 145 GMDVLDINSGQTVRLSPPEKY-------------KKKLGFVETISIPEHNELWVSQMQA------NAVHVFDLKTLAYKA 205 (433)
T ss_dssp SEEEEETTTCCEEEECCCHHH-------------HTTCCEEEEEEEGGGTEEEEEEGGG------TEEEEEETTTCCEEE
T ss_pred eEEEEECCCCeEeeecCcccc-------------cccCCceeEEEEcCCCEEEEEECCC------CEEEEEECCCceEEE
Confidence 588899988776543332110 011111222333 77888887643 248999998876543
Q ss_pred eecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEE
Q 012184 94 METSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVF 171 (469)
Q Consensus 94 ~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~ 171 (469)
... .. ...-..++.. +..+|+.++.+ +.+.+||+.+.+...... ....-..++...++..+++
T Consensus 206 ~~~---~~-~~~~~~~~~~~~~~~l~~~~~~~------~~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~ 270 (433)
T 3bws_A 206 TVD---LT-GKWSKILLYDPIRDLVYCSNWIS------EDISVIDRKTKLEIRKTD-----KIGLPRGLLLSKDGKELYI 270 (433)
T ss_dssp EEE---CS-SSSEEEEEEETTTTEEEEEETTT------TEEEEEETTTTEEEEECC-----CCSEEEEEEECTTSSEEEE
T ss_pred EEc---CC-CCCeeEEEEcCCCCEEEEEecCC------CcEEEEECCCCcEEEEec-----CCCCceEEEEcCCCCEEEE
Confidence 321 11 1111222222 34576665432 359999999887654321 1111223333334434444
Q ss_pred ecCCCCc---ccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEEEe
Q 012184 172 GGCSHSI---FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSIL 246 (469)
Q Consensus 172 GG~~~~~---~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~ 246 (469)
++..... .-..+++||+.+.+-...... +. ....++.. ++.+|+.++.+ ..+.+||+.+..-...
T Consensus 271 ~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~---~~--~~~~~~~~~~g~~l~~~~~~~-----~~v~v~d~~~~~~~~~ 340 (433)
T 3bws_A 271 AQFSASNQESGGGRLGIYSMDKEKLIDTIGP---PG--NKRHIVSGNTENKIYVSDMCC-----SKIEVYDLKEKKVQKS 340 (433)
T ss_dssp EEEESCTTCSCCEEEEEEETTTTEEEEEEEE---EE--CEEEEEECSSTTEEEEEETTT-----TEEEEEETTTTEEEEE
T ss_pred EECCCCccccCCCeEEEEECCCCcEEeeccC---CC--CcceEEECCCCCEEEEEecCC-----CEEEEEECCCCcEEEE
Confidence 4432211 124799999987764432210 11 11122222 23577776532 3688999987654332
Q ss_pred ccCCCCCCCCCCCcceEEEEEcCCc-EEEEEeccCCC----------CCceEEEEECCCCC
Q 012184 247 TSVKGRNPLASEGLSVCSAIIEGEH-HLVAFGGYNGK----------YNNEVFVMRLKPRD 296 (469)
Q Consensus 247 ~~~~~~~p~~r~~~s~~~~~~~~~~-~l~v~GG~~~~----------~~~~~~~~d~~~~~ 296 (469)
- +.. .....+...+++ .+++.+...+. ....+++||+.+..
T Consensus 341 ~--~~~-------~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 341 I--PVF-------DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp E--ECS-------SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred e--cCC-------CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 1 111 112233444444 45544432211 12479999987654
No 34
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.52 E-value=0.067 Score=51.00 Aligned_cols=217 Identities=11% Similarity=0.141 Sum_probs=113.2
Q ss_pred ceEEEEccCCc--eeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe--E
Q 012184 16 VVMVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--C 91 (469)
Q Consensus 16 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W 91 (469)
.+..||+.+++ |+........ . ..........+.++.++.||+.... ..++.||..+++ |
T Consensus 64 ~v~a~d~~tG~~~W~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~v~v~~~~-------g~l~a~d~~tG~~~W 127 (376)
T 3q7m_A 64 LVKALNADDGKEIWSVSLAEKDG------W---FSKEPALLSGGVTVSGGHVYIGSEK-------AQVYALNTSDGTVAW 127 (376)
T ss_dssp EEEEEETTTCCEEEEEECCC---------C---CSCCCCCEEEEEEEETTEEEEEETT-------SEEEEEETTTCCEEE
T ss_pred eEEEEEccCCceeeeecCccccc------c---ccccCcccccCceEeCCEEEEEcCC-------CEEEEEECCCCCEEE
Confidence 68999998764 7654332100 0 0000122334455668888886431 349999998876 7
Q ss_pred EEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEeeeCCCCCCCCCCceEEEEcCcEEE
Q 012184 92 GVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRYLI 169 (469)
Q Consensus 92 ~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~l~ 169 (469)
+.-... . ...+.+..++.+|+..+ ...++.||+.+++ |...... +....+...+.+.. ++.+|
T Consensus 128 ~~~~~~-~-----~~~~p~~~~~~v~v~~~-------~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~-~~~v~ 192 (376)
T 3q7m_A 128 QTKVAG-E-----ALSRPVVSDGLVLIHTS-------NGQLQALNEADGAVKWTVNLDM-PSLSLRGESAPTTA-FGAAV 192 (376)
T ss_dssp EEECSS-C-----CCSCCEEETTEEEEECT-------TSEEEEEETTTCCEEEEEECCC------CCCCCCEEE-TTEEE
T ss_pred EEeCCC-c-----eEcCCEEECCEEEEEcC-------CCeEEEEECCCCcEEEEEeCCC-CceeecCCCCcEEE-CCEEE
Confidence 654311 1 12223445777776432 3359999998875 8764321 11111112233333 66566
Q ss_pred EEecCCCCcccCcEEEEECCCCc--eEeeeecCCCCCCC--------cceEEEEECCEEEEEecCCCCCCcceEEEEECC
Q 012184 170 VFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGR--------AGHAGITIDENWYIVGGGDNNNGCQETIVLNMT 239 (469)
Q Consensus 170 v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r--------~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~ 239 (469)
+ |..+ ..++.||+.+++ |.... ..|... .....+..++.+|+.+. ...++.||+.
T Consensus 193 ~-g~~~-----g~l~~~d~~tG~~~w~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~------~g~l~~~d~~ 257 (376)
T 3q7m_A 193 V-GGDN-----GRVSAVLMEQGQMIWQQRI---SQATGSTEIDRLSDVDTTPVVVNGVVFALAY------NGNLTALDLR 257 (376)
T ss_dssp E-CCTT-----TEEEEEETTTCCEEEEEEC---CC-----------CCCCCCEEETTEEEEECT------TSCEEEEETT
T ss_pred E-EcCC-----CEEEEEECCCCcEEEEEec---ccCCCCcccccccccCCCcEEECCEEEEEec------CcEEEEEECC
Confidence 5 3321 468999998765 77532 111111 11233445777777542 2368899987
Q ss_pred CC--cEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCC
Q 012184 240 KL--AWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD 296 (469)
Q Consensus 240 ~~--~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~ 296 (469)
+. .|..-. .. .. ...+. ++.+|+... ...++.||+.+..
T Consensus 258 tG~~~w~~~~--~~--------~~--~~~~~-~~~l~~~~~-----~g~l~~~d~~tG~ 298 (376)
T 3q7m_A 258 SGQIMWKREL--GS--------VN--DFIVD-GNRIYLVDQ-----NDRVMALTIDGGV 298 (376)
T ss_dssp TCCEEEEECC--CC--------EE--EEEEE-TTEEEEEET-----TCCEEEEETTTCC
T ss_pred CCcEEeeccC--CC--------CC--CceEE-CCEEEEEcC-----CCeEEEEECCCCc
Confidence 65 466421 10 11 11222 567777653 2248888887654
No 35
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.49 E-value=0.0076 Score=54.39 Aligned_cols=138 Identities=11% Similarity=-0.018 Sum_probs=88.7
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME 95 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~ 95 (469)
.+..+|+.+++=..-- . +...++..++..+++||+... ..+.+++||+.|.+-..--
T Consensus 76 ~v~~iD~~Tgkv~~~~-l----------------~~~~FgeGit~~g~~Ly~ltw------~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 76 TLRQLSLESAQPVWME-R----------------LGNIFAEGLASDGERLYQLTW------TEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp EEEECCSSCSSCSEEE-E----------------CTTCCEEEEEECSSCEEEEES------SSCEEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCcEEeEE-C----------------CCCcceeEEEEeCCEEEEEEc------cCCEEEEEECCcCcEEEEE
Confidence 4778899888754444 3 334566778888999999844 2345999999998754332
Q ss_pred cCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCce-EEEEcCcEEEEEecC
Q 012184 96 TSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS-AALHANRYLIVFGGC 174 (469)
Q Consensus 96 ~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~-~~~~~~~~l~v~GG~ 174 (469)
+.+..+.+++.-++.||+.-| .+.++.+|+.|.+-..--..+..+.+...-. +... +++||+-- +
T Consensus 133 -----~~~~eGwGLt~Dg~~L~vSdG-------s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanv-w 198 (268)
T 3nok_A 133 -----RYSGEGWGLCYWNGKLVRSDG-------GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANI-W 198 (268)
T ss_dssp -----ECSSCCCCEEEETTEEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE-T
T ss_pred -----eCCCceeEEecCCCEEEEECC-------CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEE-C
Confidence 112346777777888998743 5579999999976543322222222322222 2333 77788522 1
Q ss_pred CCCcccCcEEEEECCCCceE
Q 012184 175 SHSIFFNDLHVLDLQTNEWS 194 (469)
Q Consensus 175 ~~~~~~~~i~~~d~~~~~W~ 194 (469)
..+.|.+.|+.+++-.
T Consensus 199 ----~s~~I~vIDp~TG~V~ 214 (268)
T 3nok_A 199 ----HSSDVLEIDPATGTVV 214 (268)
T ss_dssp ----TCSEEEEECTTTCBEE
T ss_pred ----CCCeEEEEeCCCCcEE
Confidence 2478999999998743
No 36
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.49 E-value=0.019 Score=54.96 Aligned_cols=216 Identities=12% Similarity=0.029 Sum_probs=113.0
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 93 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~ 93 (469)
.+..||+.+++....-..+ . .-.+++.. +..||+.|... ..+++||+.++....
T Consensus 55 ~i~v~d~~~~~~~~~~~~~----------------~--~v~~~~~spdg~~l~~~~~~~------~~v~v~d~~~~~~~~ 110 (391)
T 1l0q_A 55 DVSIIDTATNNVIATVPAG----------------S--SPQGVAVSPDGKQVYVTNMAS------STLSVIDTTSNTVAG 110 (391)
T ss_dssp EEEEEETTTTEEEEEEECS----------------S--SEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEE
T ss_pred eEEEEECCCCeEEEEEECC----------------C--CccceEECCCCCEEEEEECCC------CEEEEEECCCCeEEE
Confidence 7888999887654433321 1 12222222 45566665421 349999999987655
Q ss_pred eecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcC-cEEEE
Q 012184 94 METSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHAN-RYLIV 170 (469)
Q Consensus 94 ~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~~l~v 170 (469)
....+ ..-.+++.. +..||+.++. .+.+++||+.+.+.......+.. -..++...+ +.+|+
T Consensus 111 ~~~~~-----~~~~~~~~s~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~~-----~~~~~~~~dg~~l~~ 174 (391)
T 1l0q_A 111 TVKTG-----KSPLGLALSPDGKKLYVTNNG------DKTVSVINTVTKAVINTVSVGRS-----PKGIAVTPDGTKVYV 174 (391)
T ss_dssp EEECS-----SSEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEECCSS-----EEEEEECTTSSEEEE
T ss_pred EEeCC-----CCcceEEECCCCCEEEEEeCC------CCEEEEEECCCCcEEEEEecCCC-----cceEEECCCCCEEEE
Confidence 44211 112233332 2357676643 34699999999887655432211 123333333 46667
Q ss_pred EecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccC
Q 012184 171 FGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSV 249 (469)
Q Consensus 171 ~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~ 249 (469)
.++.+ +.++++|+.+........ .......++.. ++..+++++... ....+.+||+.+..-... +
T Consensus 175 ~~~~~-----~~v~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~~~~~~--~~~~v~~~d~~~~~~~~~--~ 240 (391)
T 1l0q_A 175 ANFDS-----MSISVIDTVTNSVIDTVK-----VEAAPSGIAVNPEGTKAYVTNVDK--YFNTVSMIDTGTNKITAR--I 240 (391)
T ss_dssp EETTT-----TEEEEEETTTTEEEEEEE-----CSSEEEEEEECTTSSEEEEEEECS--SCCEEEEEETTTTEEEEE--E
T ss_pred EeCCC-----CEEEEEECCCCeEEEEEe-----cCCCccceEECCCCCEEEEEecCc--CCCcEEEEECCCCeEEEE--E
Confidence 66543 469999998876544321 11112223322 344444443211 134789999987654322 2
Q ss_pred CCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECCCCC
Q 012184 250 KGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLKPRD 296 (469)
Q Consensus 250 ~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~~~~ 296 (469)
+... ....+...+ +..|++.++.++ .+.+||+.+..
T Consensus 241 ~~~~-------~~~~~~~s~dg~~l~~s~~~d~----~v~v~d~~~~~ 277 (391)
T 1l0q_A 241 PVGP-------DPAGIAVTPDGKKVYVALSFXN----TVSVIDTATNT 277 (391)
T ss_dssp ECCS-------SEEEEEECTTSSEEEEEETTTT----EEEEEETTTTE
T ss_pred ecCC-------CccEEEEccCCCEEEEEcCCCC----EEEEEECCCCc
Confidence 1111 122333444 446777766543 58888886543
No 37
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.49 E-value=0.062 Score=49.54 Aligned_cols=150 Identities=16% Similarity=0.169 Sum_probs=77.0
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
++.+++.|+.++ .+..||+.++.-...- +........+.+ ++.+++.|+.+. .+.+||+.+
T Consensus 118 ~~~~l~s~~~d~------~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~~wd~~~ 180 (312)
T 4ery_A 118 QSNLIVSGSFDE------SVRIWDVKTGKCLKTL-----PAHSDPVSAVHFNRDGSLIVSSSYDG------LCRIWDTAS 180 (312)
T ss_dssp SSSEEEEEETTS------CEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTT
T ss_pred CCCEEEEEeCCC------cEEEEECCCCEEEEEe-----cCCCCcEEEEEEcCCCCEEEEEeCCC------cEEEEECCC
Confidence 455666766443 2889999887643322 111112222333 456677776543 488999988
Q ss_pred CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEE-ECCEE
Q 012184 140 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT-IDENW 218 (469)
Q Consensus 140 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~l 218 (469)
.+......... ......+....++..++.|+.+ +.+.+||+.+..-.... .+............. .++.+
T Consensus 181 ~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 251 (312)
T 4ery_A 181 GQCLKTLIDDD---NPPVSFVKFSPNGKYILAATLD-----NTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKW 251 (312)
T ss_dssp CCEEEEECCSS---CCCEEEEEECTTSSEEEEEETT-----TEEEEEETTTTEEEEEE-CSSCCSSSCCCEEEECSSSCE
T ss_pred CceeeEEeccC---CCceEEEEECCCCCEEEEEcCC-----CeEEEEECCCCcEEEEE-EecCCceEEEEEEEEeCCCcE
Confidence 76543321111 1111122222355566666644 46889999877543321 111111112222222 24566
Q ss_pred EEEecCCCCCCcceEEEEECCCCc
Q 012184 219 YIVGGGDNNNGCQETIVLNMTKLA 242 (469)
Q Consensus 219 ~v~GG~~~~~~~~d~~~~d~~~~~ 242 (469)
++.|+.+ ..+.+||+.+..
T Consensus 252 l~sg~~d-----g~i~vwd~~~~~ 270 (312)
T 4ery_A 252 IVSGSED-----NLVYIWNLQTKE 270 (312)
T ss_dssp EEECCTT-----SCEEEEETTTCC
T ss_pred EEEECCC-----CEEEEEECCCch
Confidence 7776643 257889987765
No 38
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=97.46 E-value=0.02 Score=53.91 Aligned_cols=237 Identities=12% Similarity=0.045 Sum_probs=109.5
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME 95 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~ 95 (469)
.++.+|+.++++..+...... ......+..-+++||+.+... ....+++||+.++.+..+.
T Consensus 19 ~v~~~d~~tg~~~~~~~~~~~---------------~~p~~~a~spdg~l~~~~~~~----~~~~v~~~~~~~g~~~~~~ 79 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDGLLAAT---------------QNPTYLALSAKDCLYSVDKED----DEGGIAAWQIDGQTAHKLN 79 (347)
T ss_dssp EEEEEETTTTEEEEEEEEEEC---------------SCCCCEEECTTCEEEEEEEET----TEEEEEEEEEETTEEEEEE
T ss_pred EEEEEcCCCCeEEEeeeeecc---------------CCcceEEEccCCeEEEEEecC----CCceEEEEEecCCcEEEee
Confidence 477888888988876554211 111112222367777665321 1245899999888887765
Q ss_pred cCCCCCCCCcceEEEEECC-EEEEEeccCCCCCccCcEEEEECC-CCeEEEee---eCCCCCCCCC----CceEEEEcCc
Q 012184 96 TSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLE-TMTWDAVE---VTQTPPAPRY----DHSAALHANR 166 (469)
Q Consensus 96 ~~g~~p~~r~~~~~~~~~~-~lyi~GG~~~~~~~~~~v~~~d~~-t~~W~~~~---~~g~~p~~r~----~~~~~~~~~~ 166 (469)
... .......+.+..-++ .||+.+. . .+.+.+|++. +.....+. ..+..|.+|. .+.++...++
T Consensus 80 ~~~-~~~~~p~~~a~spdg~~l~~~~~-~-----~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg 152 (347)
T 3hfq_A 80 TVV-APGTPPAYVAVDEARQLVYSANY-H-----KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN 152 (347)
T ss_dssp EEE-EESCCCSEEEEETTTTEEEEEET-T-----TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS
T ss_pred eee-cCCCCCEEEEECCCCCEEEEEeC-C-----CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC
Confidence 310 011111122222234 4665542 1 2457788874 33333332 1222222221 2233443455
Q ss_pred EEEEEecCCCCcccCcEEEEECC-CCceEeeeecCCCCCCCcceEEEEE-CC-EEEEEecCCCCCCcceEEEEE--CCCC
Q 012184 167 YLIVFGGCSHSIFFNDLHVLDLQ-TNEWSQPEIKGDLVTGRAGHAGITI-DE-NWYIVGGGDNNNGCQETIVLN--MTKL 241 (469)
Q Consensus 167 ~l~v~GG~~~~~~~~~i~~~d~~-~~~W~~~~~~~~~p~~r~~~~~~~~-~~-~l~v~GG~~~~~~~~d~~~~d--~~~~ 241 (469)
++|+.+..+ +.+++|++. ++....+... ..+.......++.. ++ .+|+.+..+ +.+.+|+ ..+.
T Consensus 153 ~l~v~~~~~-----~~v~~~~~~~~g~~~~~~~~-~~~~g~~p~~~~~spdg~~l~v~~~~~-----~~v~v~~~~~~~g 221 (347)
T 3hfq_A 153 RLAVIDLGS-----DKVYVYNVSDAGQLSEQSVL-TMEAGFGPRHLVFSPDGQYAFLAGELS-----SQIASLKYDTQTG 221 (347)
T ss_dssp CEEEEETTT-----TEEEEEEECTTSCEEEEEEE-ECCTTCCEEEEEECTTSSEEEEEETTT-----TEEEEEEEETTTT
T ss_pred cEEEEeCCC-----CEEEEEEECCCCcEEEeeeE-EcCCCCCCceEEECCCCCEEEEEeCCC-----CEEEEEEecCCCC
Confidence 666654322 468899987 5555543211 11111111123322 34 467665422 2444444 4456
Q ss_pred cEEEeccCCCCCCCCCCCcceEEEEEcCC-cEEEEEeccCCCCCceEEEEECC
Q 012184 242 AWSILTSVKGRNPLASEGLSVCSAIIEGE-HHLVAFGGYNGKYNNEVFVMRLK 293 (469)
Q Consensus 242 ~W~~~~~~~~~~p~~r~~~s~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~d~~ 293 (469)
.+..+..................+.+.++ .+||+.+..+ +.+.+|++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~----~~v~v~~~~ 270 (347)
T 3hfq_A 222 AFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY----NTLAVFAVT 270 (347)
T ss_dssp EEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT----TEEEEEEEC
T ss_pred ceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC----CEEEEEEEC
Confidence 66544332211100001122333445554 4576665432 357777775
No 39
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.45 E-value=0.062 Score=49.69 Aligned_cols=211 Identities=15% Similarity=0.031 Sum_probs=108.3
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 93 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~ 93 (469)
.+..||+.+.+......... .......+.+ ++..++.|+.++ .+..||+.++....
T Consensus 120 ~i~~~d~~~~~~~~~~~~~~----------------~~~~i~~~~~~~~~~~l~~~~~dg------~v~~~d~~~~~~~~ 177 (337)
T 1gxr_A 120 TLSIWDLAAPTPRIKAELTS----------------SAPACYALAISPDSKVCFSCCSDG------NIAVWDLHNQTLVR 177 (337)
T ss_dssp EEEEEECCCC--EEEEEEEC----------------SSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEE
T ss_pred cEEEEECCCCCcceeeeccc----------------CCCceEEEEECCCCCEEEEEeCCC------cEEEEeCCCCceee
Confidence 67888888877544444321 1111222222 555666666432 28899998886544
Q ss_pred eecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEE
Q 012184 94 METSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVF 171 (469)
Q Consensus 94 ~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~ 171 (469)
.. .... .....+.+ ++..++.|+.+ ..+.+||+.+..-..... . ...-.++....++.++++
T Consensus 178 ~~---~~~~--~~i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~---~--~~~v~~~~~s~~~~~l~~ 241 (337)
T 1gxr_A 178 QF---QGHT--DGASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHD---F--TSQIFSLGYCPTGEWLAV 241 (337)
T ss_dssp EE---CCCS--SCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEE---C--SSCEEEEEECTTSSEEEE
T ss_pred ee---eccc--CceEEEEECCCCCEEEEEecC------CcEEEEECCCCceEeeec---C--CCceEEEEECCCCCEEEE
Confidence 33 1111 12222333 45566666533 358999998876544321 1 111223333345556777
Q ss_pred ecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCC
Q 012184 172 GGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVK 250 (469)
Q Consensus 172 GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~ 250 (469)
|+.+ ..+.+||+.+..-..+. . ....-.+++.. ++.+++.|+.+ ..+.+||+.+..-......
T Consensus 242 ~~~~-----~~i~~~~~~~~~~~~~~---~--~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~~~~~~~~~~~~~~- 305 (337)
T 1gxr_A 242 GMES-----SNVEVLHVNKPDKYQLH---L--HESCVLSLKFAYCGKWFVSTGKD-----NLLNAWRTPYGASIFQSKE- 305 (337)
T ss_dssp EETT-----SCEEEEETTSSCEEEEC---C--CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEEC-
T ss_pred EcCC-----CcEEEEECCCCCeEEEc---C--CccceeEEEECCCCCEEEEecCC-----CcEEEEECCCCeEEEEecC-
Confidence 7643 45889998876533321 1 11112223332 45666776642 3588899887664422111
Q ss_pred CCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEEC
Q 012184 251 GRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRL 292 (469)
Q Consensus 251 ~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~ 292 (469)
......+...+++.+++.|+.++. +.+|++
T Consensus 306 --------~~~v~~~~~s~~~~~l~~~~~dg~----i~iw~~ 335 (337)
T 1gxr_A 306 --------SSSVLSCDISVDDKYIVTGSGDKK----ATVYEV 335 (337)
T ss_dssp --------SSCEEEEEECTTSCEEEEEETTSC----EEEEEE
T ss_pred --------CCcEEEEEECCCCCEEEEecCCCe----EEEEEE
Confidence 112333444455567777776553 555553
No 40
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.44 E-value=0.028 Score=54.30 Aligned_cols=198 Identities=12% Similarity=0.100 Sum_probs=97.9
Q ss_pred eeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEE
Q 012184 57 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHF 134 (469)
Q Consensus 57 ~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~ 134 (469)
.++.+++.+++.|+.+ ..+..||+.+..-......+ ......++.+ ++.+++.|+.+ +.+.+
T Consensus 180 ~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~d------~~v~i 243 (401)
T 4aez_A 180 GCLSWNRHVLSSGSRS------GAIHHHDVRIANHQIGTLQG----HSSEVCGLAWRSDGLQLASGGND------NVVQI 243 (401)
T ss_dssp EEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEEC----CSSCEEEEEECTTSSEEEEEETT------SCEEE
T ss_pred EEEEECCCEEEEEcCC------CCEEEEecccCcceeeEEcC----CCCCeeEEEEcCCCCEEEEEeCC------CeEEE
Confidence 3444466677777644 23888998743322111111 1112222333 45677777654 34899
Q ss_pred EECCCCeEEEeeeCCCCCCCCCCceEEEEc-CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEE
Q 012184 135 LDLETMTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT 213 (469)
Q Consensus 135 ~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~ 213 (469)
||+.+..-..... . ....-.++.... +..+++.||... -..+.+||+.+..-..... ....-.+++.
T Consensus 244 wd~~~~~~~~~~~--~--~~~~v~~~~~~p~~~~ll~~~~gs~---d~~i~i~d~~~~~~~~~~~-----~~~~v~~~~~ 311 (401)
T 4aez_A 244 WDARSSIPKFTKT--N--HNAAVKAVAWCPWQSNLLATGGGTM---DKQIHFWNAATGARVNTVD-----AGSQVTSLIW 311 (401)
T ss_dssp EETTCSSEEEEEC--C--CSSCCCEEEECTTSTTEEEEECCTT---TCEEEEEETTTCCEEEEEE-----CSSCEEEEEE
T ss_pred ccCCCCCccEEec--C--CcceEEEEEECCCCCCEEEEecCCC---CCEEEEEECCCCCEEEEEe-----CCCcEEEEEE
Confidence 9998765433221 1 111122333322 345777765221 1468999988766443221 1111122222
Q ss_pred E-CC-EEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEE
Q 012184 214 I-DE-NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMR 291 (469)
Q Consensus 214 ~-~~-~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d 291 (469)
. ++ .+++.+|... ..+.+||+.+.....+..+.... ..+..+...+++.+++.||.++ .+.+||
T Consensus 312 s~~~~~l~~~~g~~d----g~i~v~~~~~~~~~~~~~~~~h~------~~v~~~~~s~dg~~l~s~~~dg----~i~iw~ 377 (401)
T 4aez_A 312 SPHSKEIMSTHGFPD----NNLSIWSYSSSGLTKQVDIPAHD------TRVLYSALSPDGRILSTAASDE----NLKFWR 377 (401)
T ss_dssp CSSSSEEEEEECTTT----CEEEEEEEETTEEEEEEEEECCS------SCCCEEEECTTSSEEEEECTTS----EEEEEE
T ss_pred CCCCCeEEEEeecCC----CcEEEEecCCccceeEEEecCCC------CCEEEEEECCCCCEEEEEeCCC----cEEEEE
Confidence 2 33 4444445322 36888888887666544332221 1122233444556677777654 588888
Q ss_pred CCCCC
Q 012184 292 LKPRD 296 (469)
Q Consensus 292 ~~~~~ 296 (469)
+.+..
T Consensus 378 ~~~~~ 382 (401)
T 4aez_A 378 VYDGD 382 (401)
T ss_dssp CCC--
T ss_pred CCCCc
Confidence 86654
No 41
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.40 E-value=0.086 Score=49.26 Aligned_cols=224 Identities=12% Similarity=-0.035 Sum_probs=114.3
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 93 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~ 93 (469)
.++.+|+.+++-...-..+. . .+.++.. ++.+|+.++.. +.++.||+.+++-..
T Consensus 70 ~v~~~d~~~~~~~~~~~~~~-----------------~-~~~~~~s~dg~~l~v~~~~~------~~v~~~d~~~~~~~~ 125 (353)
T 3vgz_A 70 VVYRLDPVTLEVTQAIHNDL-----------------K-PFGATINNTTQTLWFGNTVN------SAVTAIDAKTGEVKG 125 (353)
T ss_dssp EEEEECTTTCCEEEEEEESS-----------------C-CCSEEEETTTTEEEEEETTT------TEEEEEETTTCCEEE
T ss_pred cEEEEcCCCCeEEEEEecCC-----------------C-cceEEECCCCCEEEEEecCC------CEEEEEeCCCCeeEE
Confidence 68889998876544333221 1 2222222 45677776532 359999999887533
Q ss_pred eecCCCCCC-----CCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeee-CCCCCCCCCCceEEEEc-
Q 012184 94 METSGKVPV-----ARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEV-TQTPPAPRYDHSAALHA- 164 (469)
Q Consensus 94 ~~~~g~~p~-----~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~-~g~~p~~r~~~~~~~~~- 164 (469)
....+.... +..-+.++.. ++.+|+.+... ...+++||+.+.+-..... .+. ..+.++...
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~s~d 195 (353)
T 3vgz_A 126 RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQNTGK-----MSTGLALDSE 195 (353)
T ss_dssp EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEECCCCT-----TCCCCEEETT
T ss_pred EEecCCCccccccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEecCCCC-----ccceEEECCC
Confidence 322211111 0111223332 34677665221 3459999999887544332 111 112233333
Q ss_pred CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCc
Q 012184 165 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLA 242 (469)
Q Consensus 165 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~ 242 (469)
++++|+... .+.+++||+.+.+-......+..........++.. ++.+|+.... .+.+++||+.+..
T Consensus 196 g~~l~~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~~~v~~~d~~~~~ 264 (353)
T 3vgz_A 196 GKRLYTTNA------DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK-----AAEVLVVDTRNGN 264 (353)
T ss_dssp TTEEEEECT------TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS-----SSEEEEEETTTCC
T ss_pred CCEEEEEcC------CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC-----CCEEEEEECCCCc
Confidence 455666543 25788999988764432212111111222233333 3456665432 3579999998876
Q ss_pred EEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCC
Q 012184 243 WSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI 297 (469)
Q Consensus 243 W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w 297 (469)
.......+. + .. ..+..+ +.++|+.+..+ +.+.++|+.+...
T Consensus 265 ~~~~~~~~~--~-----~~-~~~s~d-g~~l~v~~~~~----~~v~~~d~~~~~~ 306 (353)
T 3vgz_A 265 ILAKVAAPE--S-----LA-VLFNPA-RNEAYVTHRQA----GKVSVIDAKSYKV 306 (353)
T ss_dssp EEEEEECSS--C-----CC-EEEETT-TTEEEEEETTT----TEEEEEETTTTEE
T ss_pred EEEEEEcCC--C-----ce-EEECCC-CCEEEEEECCC----CeEEEEECCCCeE
Confidence 544322211 1 11 222222 45677766433 3688999876543
No 42
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=97.39 E-value=0.026 Score=55.06 Aligned_cols=198 Identities=9% Similarity=0.038 Sum_probs=104.4
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CC-EEEEEeccCCCCCccCcEEEEECC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GS-RLIIFGGEDRSRKLLNDVHFLDLE 138 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~-~lyi~GG~~~~~~~~~~v~~~d~~ 138 (469)
+++.+++++.... ...++.+|+.+++...+. ..+. ...++.+ ++ .|++.+..+. ...++++|+.
T Consensus 189 dg~~la~~s~~~~---~~~i~~~d~~tg~~~~l~---~~~~---~~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~ 255 (415)
T 2hqs_A 189 DGSKLAYVTFESG---RSALVIQTLANGAVRQVA---SFPR---HNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLA 255 (415)
T ss_dssp TSSEEEEEECTTS---SCEEEEEETTTCCEEEEE---CCSS---CEEEEEECTTSSEEEEEECTTS----SCEEEEEETT
T ss_pred CCCEEEEEEecCC---CcEEEEEECCCCcEEEee---cCCC---cccCEEEcCCCCEEEEEEecCC----CceEEEEECC
Confidence 4555555554322 245999999999887665 2221 2223333 34 4554544322 4469999999
Q ss_pred CCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCE
Q 012184 139 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DEN 217 (469)
Q Consensus 139 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~ 217 (469)
+.....+.. . ...........++..+++++... ....++++|+.+..-..+.. .......++.. +++
T Consensus 256 ~~~~~~l~~---~--~~~~~~~~~spdg~~l~~~s~~~--g~~~i~~~d~~~~~~~~l~~-----~~~~~~~~~~spdG~ 323 (415)
T 2hqs_A 256 SGQIRQVTD---G--RSNNTEPTWFPDSQNLAFTSDQA--GRPQVYKVNINGGAPQRITW-----EGSQNQDADVSSDGK 323 (415)
T ss_dssp TCCEEECCC---C--SSCEEEEEECTTSSEEEEEECTT--SSCEEEEEETTSSCCEECCC-----SSSEEEEEEECTTSS
T ss_pred CCCEEeCcC---C--CCcccceEECCCCCEEEEEECCC--CCcEEEEEECCCCCEEEEec-----CCCcccCeEECCCCC
Confidence 988765531 1 11112222223554455544321 12479999998876544321 11222222222 455
Q ss_pred EEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCC
Q 012184 218 WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI 297 (469)
Q Consensus 218 l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w 297 (469)
.+++++... ....++++|+.+.....+.... ........+++..+++++.++. ...+|++|+.....
T Consensus 324 ~l~~~~~~~--g~~~i~~~d~~~~~~~~l~~~~----------~~~~~~~spdg~~l~~~s~~~~-~~~l~~~d~~g~~~ 390 (415)
T 2hqs_A 324 FMVMVSSNG--GQQHIAKQDLATGGVQVLSSTF----------LDETPSLAPNGTMVIYSSSQGM-GSVLNLVSTDGRFK 390 (415)
T ss_dssp EEEEEEECS--SCEEEEEEETTTCCEEECCCSS----------SCEEEEECTTSSEEEEEEEETT-EEEEEEEETTSCCE
T ss_pred EEEEEECcC--CceEEEEEECCCCCEEEecCCC----------CcCCeEEcCCCCEEEEEEcCCC-ccEEEEEECCCCcE
Confidence 555554322 1357999999988876553211 1122333445556666654332 34799999875543
No 43
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.37 E-value=0.056 Score=50.00 Aligned_cols=188 Identities=15% Similarity=0.070 Sum_probs=98.3
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
++..++.|+.+ ..+..||+.+......... ........++.+ ++.+++.|+.+ ..+.+||+.+
T Consensus 108 ~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d------g~v~~~d~~~ 172 (337)
T 1gxr_A 108 DGCTLIVGGEA------STLSIWDLAAPTPRIKAEL---TSSAPACYALAISPDSKVCFSCCSD------GNIAVWDLHN 172 (337)
T ss_dssp TSSEEEEEESS------SEEEEEECCCC--EEEEEE---ECSSSCEEEEEECTTSSEEEEEETT------SCEEEEETTT
T ss_pred CCCEEEEEcCC------CcEEEEECCCCCcceeeec---ccCCCceEEEEECCCCCEEEEEeCC------CcEEEEeCCC
Confidence 45566666543 2488999988875443311 111112222333 45566666643 3489999988
Q ss_pred CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEE
Q 012184 140 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENW 218 (469)
Q Consensus 140 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l 218 (469)
.+....-. . ....-.++....++..++.|+.+ ..+.+||+.+..-.... ..+ ....+++.. ++.+
T Consensus 173 ~~~~~~~~--~--~~~~i~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~---~~~--~~v~~~~~s~~~~~ 238 (337)
T 1gxr_A 173 QTLVRQFQ--G--HTDGASCIDISNDGTKLWTGGLD-----NTVRSWDLREGRQLQQH---DFT--SQIFSLGYCPTGEW 238 (337)
T ss_dssp TEEEEEEC--C--CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEE---ECS--SCEEEEEECTTSSE
T ss_pred Cceeeeee--c--ccCceEEEEECCCCCEEEEEecC-----CcEEEEECCCCceEeee---cCC--CceEEEEECCCCCE
Confidence 87544321 1 11112233333355566666643 46899998876543321 111 112233332 4566
Q ss_pred EEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCC
Q 012184 219 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD 296 (469)
Q Consensus 219 ~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~ 296 (469)
+++|+.+ ..+.+||+.+..-..+... ...+..+...+++.+++.|+.++ .+.+||+.+..
T Consensus 239 l~~~~~~-----~~i~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~dg----~i~~~~~~~~~ 298 (337)
T 1gxr_A 239 LAVGMES-----SNVEVLHVNKPDKYQLHLH---------ESCVLSLKFAYCGKWFVSTGKDN----LLNAWRTPYGA 298 (337)
T ss_dssp EEEEETT-----SCEEEEETTSSCEEEECCC---------SSCEEEEEECTTSSEEEEEETTS----EEEEEETTTCC
T ss_pred EEEEcCC-----CcEEEEECCCCCeEEEcCC---------ccceeEEEECCCCCEEEEecCCC----cEEEEECCCCe
Confidence 7776643 3588999887654333211 11233444455556677777554 58888886654
No 44
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.31 E-value=0.04 Score=53.78 Aligned_cols=190 Identities=15% Similarity=0.149 Sum_probs=98.4
Q ss_pred eeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEE
Q 012184 56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFL 135 (469)
Q Consensus 56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~ 135 (469)
..++..++.+++.|+.++ .+.++|+.++.-...- ........++.+.+.+++.|+.++ .+.+|
T Consensus 176 v~~l~~~~~~l~sg~~dg------~i~vwd~~~~~~~~~~-----~~h~~~v~~l~~~~~~l~s~s~dg------~i~vw 238 (435)
T 1p22_A 176 VLCLQYDERVIITGSSDS------TVRVWDVNTGEMLNTL-----IHHCEAVLHLRFNNGMMVTCSKDR------SIAVW 238 (435)
T ss_dssp EEEEECCSSEEEEEETTS------CEEEEESSSCCEEEEE-----CCCCSCEEEEECCTTEEEEEETTS------CEEEE
T ss_pred EEEEEECCCEEEEEcCCC------eEEEEECCCCcEEEEE-----cCCCCcEEEEEEcCCEEEEeeCCC------cEEEE
Confidence 344445777888877543 2889999888654332 111222334444555666776443 48889
Q ss_pred ECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEEC
Q 012184 136 DLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID 215 (469)
Q Consensus 136 d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~ 215 (469)
|+.+..-..... ..........++.++++ .++.|+.+ ..+.+||+.+..-...- ........++..+
T Consensus 239 d~~~~~~~~~~~--~~~~~~~~v~~~~~~~~-~l~s~~~d-----g~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~~ 305 (435)
T 1p22_A 239 DMASPTDITLRR--VLVGHRAAVNVVDFDDK-YIVSASGD-----RTIKVWNTSTCEFVRTL-----NGHKRGIACLQYR 305 (435)
T ss_dssp ECSSSSCCEEEE--EECCCSSCEEEEEEETT-EEEEEETT-----SEEEEEETTTCCEEEEE-----ECCSSCEEEEEEE
T ss_pred eCCCCCCceeee--EecCCCCcEEEEEeCCC-EEEEEeCC-----CeEEEEECCcCcEEEEE-----cCCCCcEEEEEeC
Confidence 987654221100 00111112233334344 55666543 45889998876543321 1111122333346
Q ss_pred CEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184 216 ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP 294 (469)
Q Consensus 216 ~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~ 294 (469)
+.+++.|+.+ ..+.+||+.+..-.. .+.... ..+..+.. ++.+++.|+.++ .+.+||+..
T Consensus 306 ~~~l~~g~~d-----g~i~iwd~~~~~~~~--~~~~h~------~~v~~~~~--~~~~l~sg~~dg----~i~vwd~~~ 365 (435)
T 1p22_A 306 DRLVVSGSSD-----NTIRLWDIECGACLR--VLEGHE------ELVRCIRF--DNKRIVSGAYDG----KIKVWDLVA 365 (435)
T ss_dssp TTEEEEEETT-----SCEEEEETTTCCEEE--EECCCS------SCEEEEEC--CSSEEEEEETTS----CEEEEEHHH
T ss_pred CCEEEEEeCC-----CeEEEEECCCCCEEE--EEeCCc------CcEEEEEe--cCCEEEEEeCCC----cEEEEECCC
Confidence 6777777743 358899988764322 222111 11222223 345677787665 377787643
No 45
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.31 E-value=0.024 Score=60.30 Aligned_cols=224 Identities=11% Similarity=0.006 Sum_probs=122.4
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 94 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~ 94 (469)
.++.||+.++++..+.... .....-++++.. ++.|++.. . .-+++||+.++.|..+
T Consensus 428 Gl~~~~~~~~~~~~~~~~~---------------~~~~~v~~i~~d~~g~lwigt-~-------~Gl~~~~~~~~~~~~~ 484 (781)
T 3v9f_A 428 NISYYNTRLKKFQIIELEK---------------NELLDVRVFYEDKNKKIWIGT-H-------AGVFVIDLASKKVIHH 484 (781)
T ss_dssp EEEEECSSSCEEEECCSTT---------------TCCCCEEEEEECTTSEEEEEE-T-------TEEEEEESSSSSCCEE
T ss_pred CEEEEcCCCCcEEEeccCC---------------CCCCeEEEEEECCCCCEEEEE-C-------CceEEEeCCCCeEEec
Confidence 6788898888887765421 112222333333 46666642 1 2299999999999887
Q ss_pred ecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEe
Q 012184 95 ETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG 172 (469)
Q Consensus 95 ~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~G 172 (469)
......+.......+... ++.|++- ... +-+++||+.+.++........+|.. .-.+++...++.|++..
T Consensus 485 ~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~------~Gl~~~~~~~~~~~~~~~~~~l~~~-~i~~i~~d~~g~lWi~T 556 (781)
T 3v9f_A 485 YDTSNSQLLENFVRSIAQDSEGRFWIG-TFG------GGVGIYTPDMQLVRKFNQYEGFCSN-TINQIYRSSKGQMWLAT 556 (781)
T ss_dssp ECTTTSSCSCSCEEEEEECTTCCEEEE-ESS------SCEEEECTTCCEEEEECTTTTCSCS-CEEEEEECTTSCEEEEE
T ss_pred ccCcccccccceeEEEEEcCCCCEEEE-EcC------CCEEEEeCCCCeEEEccCCCCCCCC-eeEEEEECCCCCEEEEE
Confidence 632111111111112222 4567653 221 2389999999999887532222211 11233333356677743
Q ss_pred cCCCCcccCcE-EEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCC
Q 012184 173 GCSHSIFFNDL-HVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVK 250 (469)
Q Consensus 173 G~~~~~~~~~i-~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~ 250 (469)
. +-+ ++||+.+.++........+|.... .+++.. ++.|++.+. +-+.+||+.+..+.......
T Consensus 557 ~-------~Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t~-------~Gl~~~~~~~~~~~~~~~~d 621 (781)
T 3v9f_A 557 G-------EGLVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWASTN-------TGISCYITSKKCFYTYDHSN 621 (781)
T ss_dssp T-------TEEEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEECS-------SCEEEEETTTTEEEEECGGG
T ss_pred C-------CCceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEcC-------CceEEEECCCCceEEecccC
Confidence 2 236 899999888877654333444333 344433 456776532 35889999999888765432
Q ss_pred CCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184 251 GRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP 294 (469)
Q Consensus 251 ~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~ 294 (469)
+.. . ..+...++..+.++.|+ |||.++ +..|+++.
T Consensus 622 Gl~-~--~~f~~~~~~~~~~G~l~-~g~~~G-----l~~f~p~~ 656 (781)
T 3v9f_A 622 NIP-Q--GSFISGCVTKDHNGLIY-FGSING-----LCFFNPDI 656 (781)
T ss_dssp TCC-S--SCEEEEEEEECTTSCEE-EEETTE-----EEEECSCC
T ss_pred Ccc-c--cccccCceEECCCCEEE-EECCCc-----eEEEChhh
Confidence 211 1 12222334444455655 566443 67777754
No 46
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=97.29 E-value=0.089 Score=54.87 Aligned_cols=196 Identities=12% Similarity=-0.024 Sum_probs=98.8
Q ss_pred cceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCC-eEEEeeeCCCCCCC
Q 012184 78 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM-TWDAVEVTQTPPAP 154 (469)
Q Consensus 78 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~-~W~~~~~~g~~p~~ 154 (469)
...++++|+.++.-..+.. ..........+.+ +++.++++..+... ....++++|+.++ .+..+.........
T Consensus 234 ~~~l~~~d~~~~~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~~-~~~~v~~~d~~~g~~~~~~~~~~~~~~~ 309 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQT---GEPKEKFLTNLSWSPDENILYVAEVNRAQ-NECKVNAYDAETGRFVRTLFVETDKHYV 309 (706)
T ss_dssp EEEEEEEETTTTEEEECCC---CSCTTCEEEEEEECTTSSEEEEEEECTTS-CEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred eeEEEEEECCCCceEeecc---CCCCceeEeeEEEECCCCEEEEEEeCCCC-CeeEEEEEECCCCceeeEEEEccCCCeE
Confidence 4569999999988665542 1111122233333 44444444433221 2457999999998 77665421110000
Q ss_pred CCCceEEEEc--CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CC-EEEEEecCCCCCC
Q 012184 155 RYDHSAALHA--NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DE-NWYIVGGGDNNNG 229 (469)
Q Consensus 155 r~~~~~~~~~--~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~-~l~v~GG~~~~~~ 229 (469)
-....+.... ++.+++.+..++ ...+|.+|........+.. + .........+ ++ .||+.+. .....
T Consensus 310 ~~~~~~~~sp~~dg~~l~~~~~~g---~~~l~~~~~~~~~~~~l~~-~----~~~v~~~~~~spdg~~l~~~~~-~~~~~ 380 (706)
T 2z3z_A 310 EPLHPLTFLPGSNNQFIWQSRRDG---WNHLYLYDTTGRLIRQVTK-G----EWEVTNFAGFDPKGTRLYFEST-EASPL 380 (706)
T ss_dssp CCCSCCEECTTCSSEEEEEECTTS---SCEEEEEETTSCEEEECCC-S----SSCEEEEEEECTTSSEEEEEES-SSCTT
T ss_pred CccCCceeecCCCCEEEEEEccCC---ccEEEEEECCCCEEEecCC-C----CeEEEeeeEEcCCCCEEEEEec-CCCCc
Confidence 0012223333 666655554332 3678888877666665531 1 1111121223 34 4555443 32222
Q ss_pred cceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCC
Q 012184 230 CQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD 296 (469)
Q Consensus 230 ~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~ 296 (469)
...+|.+|+.+.....+... .....+...+++..+++...+.....+++++|+.+..
T Consensus 381 ~~~l~~~d~~~~~~~~l~~~----------~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 381 ERHFYCIDIKGGKTKDLTPE----------SGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CBEEEEEETTCCCCEESCCS----------SSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred eEEEEEEEcCCCCceeccCC----------CceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 45799999988775555311 1122334444445555554444445678888876553
No 47
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.28 E-value=0.14 Score=50.00 Aligned_cols=190 Identities=17% Similarity=0.197 Sum_probs=97.4
Q ss_pred EEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECC
Q 012184 59 VKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE 138 (469)
Q Consensus 59 ~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~ 138 (469)
+..++..++.|+.+ ..+..||+.++.-...-. .......++.+++..++.|+.+. .+.+||+.
T Consensus 205 ~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~-----~~~~~v~~~~~~~~~l~~~~~dg------~i~iwd~~ 267 (445)
T 2ovr_B 205 MHLHEKRVVSGSRD------ATLRVWDIETGQCLHVLM-----GHVAAVRCVQYDGRRVVSGAYDF------MVKVWDPE 267 (445)
T ss_dssp EEEETTEEEEEETT------SEEEEEESSSCCEEEEEE-----CCSSCEEEEEECSSCEEEEETTS------CEEEEEGG
T ss_pred EEecCCEEEEEeCC------CEEEEEECCCCcEEEEEc-----CCcccEEEEEECCCEEEEEcCCC------EEEEEECC
Confidence 33344555665543 238888888776433221 11122234445777777776543 48889988
Q ss_pred CCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEE
Q 012184 139 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENW 218 (469)
Q Consensus 139 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l 218 (469)
+..-...-. ........+.+ ++..++.|+.+ +.+.+||+.+.+-...- .+ ..........++.+
T Consensus 268 ~~~~~~~~~-----~~~~~v~~~~~-~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~-~~----~~~~v~~~~~~~~~ 331 (445)
T 2ovr_B 268 TETCLHTLQ-----GHTNRVYSLQF-DGIHVVSGSLD-----TSIRVWDVETGNCIHTL-TG----HQSLTSGMELKDNI 331 (445)
T ss_dssp GTEEEEEEC-----CCSSCEEEEEE-CSSEEEEEETT-----SCEEEEETTTCCEEEEE-CC----CCSCEEEEEEETTE
T ss_pred CCcEeEEec-----CCCCceEEEEE-CCCEEEEEeCC-----CeEEEEECCCCCEEEEE-cC----CcccEEEEEEeCCE
Confidence 776433221 11112233334 44466666654 45889998876543221 11 11112223345566
Q ss_pred EEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCC
Q 012184 219 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI 297 (469)
Q Consensus 219 ~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w 297 (469)
++.|+.+ ..+.+||+.+..-.. .+..... ....+..+..+ +.+++.|+.++ .+.+||+.+...
T Consensus 332 l~~~~~d-----g~i~vwd~~~~~~~~--~~~~~~~---~~~~v~~~~~~--~~~l~s~~~dg----~v~iwd~~~~~~ 394 (445)
T 2ovr_B 332 LVSGNAD-----STVKIWDIKTGQCLQ--TLQGPNK---HQSAVTCLQFN--KNFVITSSDDG----TVKLWDLKTGEF 394 (445)
T ss_dssp EEEEETT-----SCEEEEETTTCCEEE--EECSTTS---CSSCEEEEEEC--SSEEEEEETTS----EEEEEETTTCCE
T ss_pred EEEEeCC-----CeEEEEECCCCcEEE--EEccCCC---CCCCEEEEEEC--CCEEEEEeCCC----eEEEEECCCCce
Confidence 6777643 357889987655322 1111110 11122233333 35667777654 588899876643
No 48
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.21 E-value=0.07 Score=50.25 Aligned_cols=233 Identities=11% Similarity=0.056 Sum_probs=112.8
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 94 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~ 94 (469)
.+..||+.++.|..+...... ...-.+++.. ++.+++.|+.++ .+..||+.++.+...
T Consensus 31 ~v~i~~~~~~~~~~~~~~~~h---------------~~~v~~~~~~~~~~~l~~~~~dg------~i~vwd~~~~~~~~~ 89 (372)
T 1k8k_C 31 EVHIYEKSGNKWVQVHELKEH---------------NGQVTGVDWAPDSNRIVTCGTDR------NAYVWTLKGRTWKPT 89 (372)
T ss_dssp EEEEEEEETTEEEEEEEEECC---------------SSCEEEEEEETTTTEEEEEETTS------CEEEEEEETTEEEEE
T ss_pred EEEEEeCCCCcEEeeeeecCC---------------CCcccEEEEeCCCCEEEEEcCCC------eEEEEECCCCeeeee
Confidence 788999999987776665311 1111122222 566666766432 288899988887665
Q ss_pred ecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCe-EEEeeeCCCCCCCCCCceEEEEcCcEEEEE
Q 012184 95 ETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMT-WDAVEVTQTPPAPRYDHSAALHANRYLIVF 171 (469)
Q Consensus 95 ~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~-W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~ 171 (469)
... ........++.+ ++.+++.|+.+ ..+.+||+.+.. |...... ..+....-.++....++.+++.
T Consensus 90 ~~~---~~~~~~v~~~~~~~~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~ 159 (372)
T 1k8k_C 90 LVI---LRINRAARCVRWAPNEKKFAVGSGS------RVISICYFEQENDWWVCKHI-KKPIRSTVLSLDWHPNSVLLAA 159 (372)
T ss_dssp EEC---CCCSSCEEEEEECTTSSEEEEEETT------SSEEEEEEETTTTEEEEEEE-CTTCCSCEEEEEECTTSSEEEE
T ss_pred EEe---ecCCCceeEEEECCCCCEEEEEeCC------CEEEEEEecCCCcceeeeee-ecccCCCeeEEEEcCCCCEEEE
Confidence 421 111222233333 45566666643 236666665543 3222211 1111112223333335557777
Q ss_pred ecCCCCcccCcEEEEECCCCc---------e-------EeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEE
Q 012184 172 GGCSHSIFFNDLHVLDLQTNE---------W-------SQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETI 234 (469)
Q Consensus 172 GG~~~~~~~~~i~~~d~~~~~---------W-------~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~ 234 (469)
|+.+ ..+.+||+.... | ..+.... .....-.+++.. ++.+++.|+.+ ..+.
T Consensus 160 ~~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~ 227 (372)
T 1k8k_C 160 GSCD-----FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS--SSCGWVHGVCFSANGSRVAWVSHD-----STVC 227 (372)
T ss_dssp EETT-----SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC--CCSSCEEEEEECSSSSEEEEEETT-----TEEE
T ss_pred EcCC-----CCEEEEEcccccccccccccccccccchhhheEecC--CCCCeEEEEEECCCCCEEEEEeCC-----CEEE
Confidence 7654 457888864211 1 1111000 011111122222 44566666643 3588
Q ss_pred EEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC--CCCCCccccC
Q 012184 235 VLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP--RDIPRPKIFQ 304 (469)
Q Consensus 235 ~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~--~~w~~~~~~~ 304 (469)
+||+.+..-... +.... ..+..+...+++.+++.| .++ .+.+|++.. ..|.....+.
T Consensus 228 i~d~~~~~~~~~--~~~~~------~~v~~~~~~~~~~~l~~~-~d~----~i~i~~~~~~~~~~~~~~~~~ 286 (372)
T 1k8k_C 228 LADADKKMAVAT--LASET------LPLLAVTFITESSLVAAG-HDC----FPVLFTYDSAAGKLSFGGRLD 286 (372)
T ss_dssp EEEGGGTTEEEE--EECSS------CCEEEEEEEETTEEEEEE-TTS----SCEEEEEETTTTEEEECCCCC
T ss_pred EEECCCCceeEE--EccCC------CCeEEEEEecCCCEEEEE-eCC----eEEEEEccCcCceEEEeeccC
Confidence 999876653321 11111 112222333355666666 433 366666666 7776555443
No 49
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=97.17 E-value=0.1 Score=49.28 Aligned_cols=195 Identities=11% Similarity=0.093 Sum_probs=88.2
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 94 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~ 94 (469)
.++.+|+.++++..+... .. ....+.+..- +..||+.+.. ......-.+|.+|..++....+
T Consensus 30 ~~~~~d~~~g~~~~~~~~-~~---------------~~p~~l~~spdg~~l~~~~~~-~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 30 YTFRFNEETGESLPLSDA-EV---------------ANPSYLIPSADGKFVYSVNEF-SKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEETTTCCEEEEEEE-EC---------------SCCCSEEECTTSSEEEEEECC-SSTTCEEEEEEEETTTTEEEEE
T ss_pred EEEEEeCCCCCEEEeecc-cC---------------CCCceEEECCCCCEEEEEEcc-CCCCCcEEEEEEeCCCCcEEEe
Confidence 356667888888877664 11 1111112222 4456665442 1111222356667777888776
Q ss_pred ecCCCCCC-CCcceEEEEECCE-EEEEeccCCCCCccCcEEEEECCCCe-EE----EeeeCCCCCCC-----CCCceEEE
Q 012184 95 ETSGKVPV-ARGGHSVTLVGSR-LIIFGGEDRSRKLLNDVHFLDLETMT-WD----AVEVTQTPPAP-----RYDHSAAL 162 (469)
Q Consensus 95 ~~~g~~p~-~r~~~~~~~~~~~-lyi~GG~~~~~~~~~~v~~~d~~t~~-W~----~~~~~g~~p~~-----r~~~~~~~ 162 (469)
... +. ...-+.++. +++ ||+.+ +. .+.+.+|++.+.. .. .....|..|.+ ...|.++.
T Consensus 93 ~~~---~~~~~~p~~~~~-dg~~l~~~~-~~-----~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 162 (361)
T 3scy_A 93 NTQ---KTMGADPCYLTT-NGKNIVTAN-YS-----GGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRI 162 (361)
T ss_dssp EEE---ECSSSCEEEEEE-CSSEEEEEE-TT-----TTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEE
T ss_pred eEe---ccCCCCcEEEEE-CCCEEEEEE-CC-----CCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEE
Confidence 532 11 112222333 554 55543 22 2457888876432 11 11111221211 11133444
Q ss_pred EcCc-EEEEEecCCCCcccCcEEEEECCCCc-------eEee---eecCCCCCCCcceEEEEE-CC-EEEEEecCCCCCC
Q 012184 163 HANR-YLIVFGGCSHSIFFNDLHVLDLQTNE-------WSQP---EIKGDLVTGRAGHAGITI-DE-NWYIVGGGDNNNG 229 (469)
Q Consensus 163 ~~~~-~l~v~GG~~~~~~~~~i~~~d~~~~~-------W~~~---~~~~~~p~~r~~~~~~~~-~~-~l~v~GG~~~~~~ 229 (469)
..++ ++|+.+.. .+.+++|++.... .... ... ..+.......++.. ++ .+|+.+..
T Consensus 163 spdg~~l~~~~~~-----~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~~~~----- 231 (361)
T 3scy_A 163 TPDGKYLLADDLG-----TDQIHKFNINPNANADNKEKFLTKGTPEAF-KVAPGSGPRHLIFNSDGKFAYLINEI----- 231 (361)
T ss_dssp CTTSSEEEEEETT-----TTEEEEEEECTTCCTTTCCCCEEEEEEEEE-ECCTTCCEEEEEECTTSSEEEEEETT-----
T ss_pred CCCCCEEEEEeCC-----CCEEEEEEEcCCCCcccccceeecccccce-ecCCCCCCeEEEEcCCCCEEEEEcCC-----
Confidence 4455 46665421 2467788766543 2111 000 11111112233333 34 46666432
Q ss_pred cceEEEEECCCCcEEEecc
Q 012184 230 CQETIVLNMTKLAWSILTS 248 (469)
Q Consensus 230 ~~d~~~~d~~~~~W~~~~~ 248 (469)
.+.+.+||+.+..+..+..
T Consensus 232 ~~~v~v~~~~~g~~~~~~~ 250 (361)
T 3scy_A 232 GGTVIAFRYADGMLDEIQT 250 (361)
T ss_dssp TCEEEEEEEETTEEEEEEE
T ss_pred CCeEEEEEecCCceEEeEE
Confidence 2368888887777655443
No 50
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=97.15 E-value=0.072 Score=48.02 Aligned_cols=229 Identities=10% Similarity=0.030 Sum_probs=114.8
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCC-CeEEEe
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLET-NLCGVM 94 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t-~~W~~~ 94 (469)
.++.+|+.++....+.... ......+..-++..+++++ . ..++.+|+.+ +....+
T Consensus 23 ~i~~~d~~~~~~~~~~~~~-----------------~~v~~~~~spdg~~l~~~~-~------~~i~~~d~~~~~~~~~~ 78 (297)
T 2ojh_A 23 SIEIFNIRTRKMRVVWQTP-----------------ELFEAPNWSPDGKYLLLNS-E------GLLYRLSLAGDPSPEKV 78 (297)
T ss_dssp EEEEEETTTTEEEEEEEES-----------------SCCEEEEECTTSSEEEEEE-T------TEEEEEESSSCCSCEEC
T ss_pred eEEEEeCCCCceeeeccCC-----------------cceEeeEECCCCCEEEEEc-C------CeEEEEeCCCCCCceEe
Confidence 7999999998877655431 1111111222455555543 1 2499999998 776655
Q ss_pred ecCCCCCC-CCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCc-EEEEEe
Q 012184 95 ETSGKVPV-ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANR-YLIVFG 172 (469)
Q Consensus 95 ~~~g~~p~-~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-~l~v~G 172 (469)
.. .+. .........-+++.+++++.... ....++.+++.+.....+... .+ .+.+....++ .|++.+
T Consensus 79 ~~---~~~~~~~~~~~~spdg~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~----~~--~~~~~~spdg~~l~~~~ 147 (297)
T 2ojh_A 79 DT---GFATICNNDHGISPDGALYAISDKVEF--GKSAIYLLPSTGGTPRLMTKN----LP--SYWHGWSPDGKSFTYCG 147 (297)
T ss_dssp CC---TTCCCBCSCCEECTTSSEEEEEECTTT--SSCEEEEEETTCCCCEECCSS----SS--EEEEEECTTSSEEEEEE
T ss_pred cc---ccccccccceEECCCCCEEEEEEeCCC--CcceEEEEECCCCceEEeecC----CC--ccceEECCCCCEEEEEE
Confidence 42 121 11111122224555555553322 256799999887765444311 11 2222332244 455444
Q ss_pred cCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCC
Q 012184 173 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKG 251 (469)
Q Consensus 173 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~ 251 (469)
+.+.. ..+|.+++.+.....+.. .+.....++.. ++..+++++... ....+|.+++.......+...
T Consensus 148 ~~~~~---~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~s~dg~~l~~~~~~~--~~~~i~~~~~~~~~~~~~~~~-- 215 (297)
T 2ojh_A 148 IRDQV---FDIYSMDIDSGVETRLTH-----GEGRNDGPDYSPDGRWIYFNSSRT--GQMQIWRVRVDGSSVERITDS-- 215 (297)
T ss_dssp EETTE---EEEEEEETTTCCEEECCC-----SSSCEEEEEECTTSSEEEEEECTT--SSCEEEEEETTSSCEEECCCC--
T ss_pred CCCCc---eEEEEEECCCCcceEccc-----CCCccccceECCCCCEEEEEecCC--CCccEEEECCCCCCcEEEecC--
Confidence 43321 367777887776655431 11111222222 444444433211 245788888877766655321
Q ss_pred CCCCCCCCcceEEEEEcCCcEEEEEeccCCC-------CCceEEEEECCCCCCC
Q 012184 252 RNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-------YNNEVFVMRLKPRDIP 298 (469)
Q Consensus 252 ~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~-------~~~~~~~~d~~~~~w~ 298 (469)
..........+++..+++++.++. ....++++|+.+....
T Consensus 216 -------~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 262 (297)
T 2ojh_A 216 -------AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE 262 (297)
T ss_dssp -------SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE
T ss_pred -------CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCce
Confidence 122223334444444555544321 2356999999876554
No 51
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.14 E-value=0.15 Score=46.79 Aligned_cols=192 Identities=13% Similarity=0.083 Sum_probs=95.8
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
++.+++.|+.+ ..+..||+.++.-...-. .. .....++.+ ++.+++.|+.+. .+.+||+.+
T Consensus 76 ~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~---~~--~~~v~~~~~~~~~~~l~s~~~d~------~i~iwd~~~ 138 (312)
T 4ery_A 76 DSNLLVSASDD------KTLKIWDVSSGKCLKTLK---GH--SNYVFCCNFNPQSNLIVSGSFDE------SVRIWDVKT 138 (312)
T ss_dssp TSSEEEEEETT------SEEEEEETTTCCEEEEEE---CC--SSCEEEEEECSSSSEEEEEETTS------CEEEEETTT
T ss_pred CCCEEEEECCC------CEEEEEECCCCcEEEEEc---CC--CCCEEEEEEcCCCCEEEEEeCCC------cEEEEECCC
Confidence 55667776643 238889998876433221 11 111122223 345666776543 488999988
Q ss_pred CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEE
Q 012184 140 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENW 218 (469)
Q Consensus 140 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l 218 (469)
.+-...-. .. ...-.++....++.+++.|+.+ ..+.+||+.+.+...... ....+.. ..++.. ++..
T Consensus 139 ~~~~~~~~--~~--~~~v~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~ 206 (312)
T 4ery_A 139 GKCLKTLP--AH--SDPVSAVHFNRDGSLIVSSSYD-----GLCRIWDTASGQCLKTLI--DDDNPPV-SFVKFSPNGKY 206 (312)
T ss_dssp CCEEEEEC--CC--SSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEEEEC--CSSCCCE-EEEEECTTSSE
T ss_pred CEEEEEec--CC--CCcEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeeEEe--ccCCCce-EEEEECCCCCE
Confidence 76433221 10 1111222222355577777654 358899988765433211 1111111 112222 4556
Q ss_pred EEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCC
Q 012184 219 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD 296 (469)
Q Consensus 219 ~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~ 296 (469)
++.|+.+ ..+.+||+.+..-... ...... ..... ...+.. .++.+++.|+.++ .+.+||+.+..
T Consensus 207 l~~~~~d-----~~i~iwd~~~~~~~~~--~~~~~~-~~~~~-~~~~~~-~~~~~l~sg~~dg----~i~vwd~~~~~ 270 (312)
T 4ery_A 207 ILAATLD-----NTLKLWDYSKGKCLKT--YTGHKN-EKYCI-FANFSV-TGGKWIVSGSEDN----LVYIWNLQTKE 270 (312)
T ss_dssp EEEEETT-----TEEEEEETTTTEEEEE--ECSSCC-SSSCC-CEEEEC-SSSCEEEECCTTS----CEEEEETTTCC
T ss_pred EEEEcCC-----CeEEEEECCCCcEEEE--EEecCC-ceEEE-EEEEEe-CCCcEEEEECCCC----EEEEEECCCch
Confidence 6666643 3688999987653321 111111 01111 112222 2456777887665 38888886553
No 52
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.044 Score=51.70 Aligned_cols=194 Identities=12% Similarity=0.131 Sum_probs=101.5
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEEC----CEEEEEeccCCCCCccCcEEEEEC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG----SRLIIFGGEDRSRKLLNDVHFLDL 137 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~----~~lyi~GG~~~~~~~~~~v~~~d~ 137 (469)
++.+++.|+.++ .+.+||+....+..+... ........++.+. +.+++.|+.+. .+.+||+
T Consensus 22 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~l~s~~~dg------~v~iwd~ 86 (379)
T 3jrp_A 22 YGKRLATCSSDK------TIKIFEVEGETHKLIDTL---TGHEGPVWRVDWAHPKFGTILASCSYDG------KVLIWKE 86 (379)
T ss_dssp SSSEEEEEETTS------CEEEEEEETTEEEEEEEE---CCCSSCEEEEEECCGGGCSEEEEEETTS------CEEEEEE
T ss_pred CCCEEEEEECCC------cEEEEecCCCcceeeeEe---cCCCCcEEEEEeCCCCCCCEEEEeccCC------EEEEEEc
Confidence 455666666432 277888876776665421 1122222333332 56666776543 4889999
Q ss_pred CCCeEEEeeeCCCCCCCCCCceEEEE-cC--cEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE
Q 012184 138 ETMTWDAVEVTQTPPAPRYDHSAALH-AN--RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI 214 (469)
Q Consensus 138 ~t~~W~~~~~~g~~p~~r~~~~~~~~-~~--~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~ 214 (469)
.+..|..+..... .......+.+ .+ +.+++.|+.+ ..+.+||+.+..-......... ...-.+++..
T Consensus 87 ~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~--~~~v~~~~~~ 156 (379)
T 3jrp_A 87 ENGRWSQIAVHAV---HSASVNSVQWAPHEYGPLLLVASSD-----GKVSVVEFKENGTTSPIIIDAH--AIGVNSASWA 156 (379)
T ss_dssp ETTEEEEEEEECC---CSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEECCTTSCCCEEEEECC--TTCEEEEEEC
T ss_pred CCCceeEeeeecC---CCcceEEEEeCCCCCCCEEEEecCC-----CcEEEEecCCCCceeeEEecCC--CCceEEEEEc
Confidence 9998876654221 1122223333 23 4567777654 4588888876632211110011 1111122222
Q ss_pred --------------CCEEEEEecCCCCCCcceEEEEECCC--CcEEEeccCCCCCCCCCCCcceEEEEEcCC---cEEEE
Q 012184 215 --------------DENWYIVGGGDNNNGCQETIVLNMTK--LAWSILTSVKGRNPLASEGLSVCSAIIEGE---HHLVA 275 (469)
Q Consensus 215 --------------~~~l~v~GG~~~~~~~~d~~~~d~~~--~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~---~~l~v 275 (469)
++.+++.|+.++ .+.+||+.+ ..+..+..+.... ..+..+...++ ..+++
T Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~h~------~~v~~~~~sp~~~~~~~l~ 225 (379)
T 3jrp_A 157 PATIEEDGEHNGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEGHS------DWVRDVAWSPTVLLRSYLA 225 (379)
T ss_dssp CCC----------CTTCEEEEEETTS-----CEEEEEEETTTTEEEEEEEECCCS------SCEEEEEECCCCSSSEEEE
T ss_pred CccccccccccCCCCCCEEEEEeCCC-----eEEEEEecCCCcceeeEEEEeccc------CcEeEEEECCCCCCCCeEE
Confidence 356777777543 466777644 3455444333221 12334444555 68888
Q ss_pred EeccCCCCCceEEEEECCCC
Q 012184 276 FGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 276 ~GG~~~~~~~~~~~~d~~~~ 295 (469)
.|+.++. +.+||+...
T Consensus 226 s~~~dg~----i~iwd~~~~ 241 (379)
T 3jrp_A 226 SVSQDRT----CIIWTQDNE 241 (379)
T ss_dssp EEETTSC----EEEEEESST
T ss_pred EEeCCCE----EEEEeCCCC
Confidence 8887663 677777654
No 53
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.09 E-value=0.096 Score=55.68 Aligned_cols=225 Identities=12% Similarity=0.061 Sum_probs=119.3
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 94 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~ 94 (469)
.+.+||+.++++..+.... + . .....-.+++.. ++.|++... .+ +++||+.++.|..+
T Consensus 428 Gl~~~d~~~~~~~~~~~~~-~-----------~-l~~~~v~~i~~d~~g~lwigt~---~G-----l~~~~~~~~~~~~~ 486 (795)
T 4a2l_A 428 GLSILHRNSGQVENFNQRN-S-----------Q-LVNENVYAILPDGEGNLWLGTL---SA-----LVRFNPEQRSFTTI 486 (795)
T ss_dssp EEEEEETTTCCEEEECTTT-S-----------C-CSCSCEEEEEECSSSCEEEEES---SC-----EEEEETTTTEEEEC
T ss_pred ceeEEeCCCCcEEEeecCC-C-----------C-cCCCeeEEEEECCCCCEEEEec---Cc-----eeEEeCCCCeEEEc
Confidence 6788999988887775421 0 0 111112233332 456666532 22 89999999999887
Q ss_pred ecCCCC-CCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCC-CC-CCCceEEEEcCcEEE
Q 012184 95 ETSGKV-PVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP-AP-RYDHSAALHANRYLI 169 (469)
Q Consensus 95 ~~~g~~-p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p-~~-r~~~~~~~~~~~~l~ 169 (469)
...... +.......+... ++.|++-.. +-+++||+.+..+ ........+ .+ ..-.+++...++.|+
T Consensus 487 ~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lW 557 (795)
T 4a2l_A 487 EKEKDGTPVVSKQITTLFRDSHKRLWIGGE--------EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIW 557 (795)
T ss_dssp CBCTTCCBCCCCCEEEEEECTTCCEEEEES--------SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEE
T ss_pred cccccccccCCceEEEEEECCCCCEEEEeC--------CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEE
Confidence 632100 111111112222 456776432 2389999999888 443110101 11 112223333456677
Q ss_pred EEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEecc
Q 012184 170 VFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 248 (469)
Q Consensus 170 v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~ 248 (469)
+... +-+++||+.+.++........+|... ..+++.. ++.|++.+. +-+.+||+.+..+.....
T Consensus 558 igT~-------~Gl~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lWi~t~-------~Gl~~~~~~~~~~~~~~~ 622 (795)
T 4a2l_A 558 VGTR-------EGFYCFNEKDKQIKRYNTTNGLPNNV-VYGILEDSFGRLWLSTN-------RGISCFNPETEKFRNFTE 622 (795)
T ss_dssp EEES-------SCEEEEETTTTEEEEECGGGTCSCSC-EEEEEECTTSCEEEEET-------TEEEEEETTTTEEEEECG
T ss_pred EEeC-------CCceeECCCCCcEEEeCCCCCCchhh-eEEEEECCCCCEEEEcC-------CceEEEcCCCCcEEEcCC
Confidence 6432 24899999999888765333344332 2333333 456777643 358899999998887654
Q ss_pred CCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184 249 VKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP 294 (469)
Q Consensus 249 ~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~ 294 (469)
..+. +. ..+...++..+.++.|+ |||.++ +..|+++.
T Consensus 623 ~dGl-~~--~~f~~~~~~~~~~G~l~-~g~~~G-----l~~~~p~~ 659 (795)
T 4a2l_A 623 SDGL-QS--NQFNTASYCRTSVGQMY-FGGING-----ITTFRPEL 659 (795)
T ss_dssp GGTC-SC--SCEEEEEEEECTTSCEE-EEETTE-----EEEECGGG
T ss_pred cCCC-cc--ccCccCceeECCCCeEE-EecCCc-----eEEEcHHH
Confidence 3221 11 12222334444455665 566443 66777643
No 54
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.031 Score=59.08 Aligned_cols=236 Identities=10% Similarity=0.042 Sum_probs=116.0
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--C--CEEEEEccccCCCCCcceEEEEECCCCeE
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--G--TKLLILGGHYKKSSDSMIVRFIDLETNLC 91 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~--~~iy~~GG~~~~~~~~~~~~~~d~~t~~W 91 (469)
.+.+||...+.+..+.... .......++.+ . +.+++.|+.++ .+..||+.++.|
T Consensus 32 ~I~vwd~~~~~~~~~~~l~----------------~h~~~V~~l~~s~~~~~~~l~s~s~Dg------~I~vwd~~~~~~ 89 (753)
T 3jro_A 32 TIKIFEVEGETHKLIDTLT----------------GHEGPVWRVDWAHPKFGTILASCSYDG------KVLIWKEENGRW 89 (753)
T ss_dssp EEEEEEEETTEEEEEEEEC----------------CCSSCEEEEEECCTTSCSEEEEEETTS------CEEEEEEETTEE
T ss_pred cEEEEecCCCCCccceecc----------------CCcCceEEEEecCCCCCCEEEEEeCCC------eEEEEECCCCcc
Confidence 6888898877887776652 12223333333 2 56777777543 288899999988
Q ss_pred EEeecCCCCCCCCcceEEEEE--C--CEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEc---
Q 012184 92 GVMETSGKVPVARGGHSVTLV--G--SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA--- 164 (469)
Q Consensus 92 ~~~~~~g~~p~~r~~~~~~~~--~--~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~--- 164 (469)
..+... ........++.+ + +.+++.|+.++ .+.+||+.+..-.........+.+ -.++....
T Consensus 90 ~~~~~~---~~h~~~V~~v~~sp~~~~~~l~sgs~dg------~I~vwdl~~~~~~~~~~~~~~~~~--v~~l~~~p~~~ 158 (753)
T 3jro_A 90 SQIAVH---AVHSASVNSVQWAPHEYGPLLLVASSDG------KVSVVEFKENGTTSPIIIDAHAIG--VNSASWAPATI 158 (753)
T ss_dssp EEEEEE---CCCSSCEEEEEECCGGGCSEEEEEETTS------EEEEEECCSSSCCCCEEEECCSSC--EEEEEECCCC-
T ss_pred cccccc---cCCCCCeEEEEECCCCCCCEEEEEeCCC------cEEEEEeecCCCcceeEeecCCCc--eEEEEecCccc
Confidence 776632 222222333333 2 56777776443 478888776521111000011111 11111111
Q ss_pred ----------CcEEEEEecCCCCcccCcEEEEECCCC--ceEeeeecCCCCCCCcceEEEEE-C---CEEEEEecCCCCC
Q 012184 165 ----------NRYLIVFGGCSHSIFFNDLHVLDLQTN--EWSQPEIKGDLVTGRAGHAGITI-D---ENWYIVGGGDNNN 228 (469)
Q Consensus 165 ----------~~~l~v~GG~~~~~~~~~i~~~d~~~~--~W~~~~~~~~~p~~r~~~~~~~~-~---~~l~v~GG~~~~~ 228 (469)
++.+++.|+.+ ..|.+||+.+. .+..+..... ....-.+++.. + +.+++.||.++
T Consensus 159 ~~~~~~~~~~d~~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~~~~l~s~s~Dg-- 229 (753)
T 3jro_A 159 EEDGEHNGTKESRKFVTGGAD-----NLVKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQDR-- 229 (753)
T ss_dssp --------CGGGCCEEEEETT-----SCEEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEESSS--
T ss_pred ccccccccCCCCCEEEEEECC-----CeEEEEeccCCcccceeeeeecC--CCCcEEEEEeccCCCCCCEEEEEecCC--
Confidence 34567777654 34778887654 3433322111 11112223332 3 57788877543
Q ss_pred CcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC-CCCCCcccc
Q 012184 229 GCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP-RDIPRPKIF 303 (469)
Q Consensus 229 ~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~-~~w~~~~~~ 303 (469)
.+.+||+.+..-.......... .....+..+...+++.+++.||.++. +.+||+.. ..|.....+
T Consensus 230 ---~I~iwd~~~~~~~~~~~~~~~~---~~~~~v~~l~~spdg~~l~s~s~Dg~----I~vwd~~~~~~~~~~~~~ 295 (753)
T 3jro_A 230 ---TCIIWTQDNEQGPWKKTLLKEE---KFPDVLWRASWSLSGNVLALSGGDNK----VTLWKENLEGKWEPAGEV 295 (753)
T ss_dssp ---CEEEEEESSSSSCCBCCBSSSS---CCSSCCCCEEECTTTCCEEEECSSSC----EECCBCCSSSCCBCCCCB
T ss_pred ---EEEEecCCCCCCcceeEEeccC---CCCCceEEEEEcCCCCEEEEEcCCCE----EEEEecCCCCCccccccc
Confidence 4677777654211000111000 01112222333445667778876653 77777763 455544433
No 55
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.06 E-value=0.045 Score=53.42 Aligned_cols=149 Identities=11% Similarity=0.147 Sum_probs=76.8
Q ss_pred eeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEE
Q 012184 57 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLD 136 (469)
Q Consensus 57 ~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d 136 (469)
.++...+..++.|+.++ .+..||+.+..-..... ..........++.+++..++.|+.+ ..+.+||
T Consensus 217 ~~l~~~~~~l~s~s~dg------~i~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~d------g~i~vwd 282 (435)
T 1p22_A 217 LHLRFNNGMMVTCSKDR------SIAVWDMASPTDITLRR--VLVGHRAAVNVVDFDDKYIVSASGD------RTIKVWN 282 (435)
T ss_dssp EEEECCTTEEEEEETTS------CEEEEECSSSSCCEEEE--EECCCSSCEEEEEEETTEEEEEETT------SEEEEEE
T ss_pred EEEEEcCCEEEEeeCCC------cEEEEeCCCCCCceeee--EecCCCCcEEEEEeCCCEEEEEeCC------CeEEEEE
Confidence 33444556667766432 28888887765221110 0011122223344456666666643 3488999
Q ss_pred CCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECC
Q 012184 137 LETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE 216 (469)
Q Consensus 137 ~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~ 216 (469)
+.+..-...-. + ......++.++++ +++.|+.+ +.+.+||+.+..-...- .. ......++.+++
T Consensus 283 ~~~~~~~~~~~-~----~~~~v~~~~~~~~-~l~~g~~d-----g~i~iwd~~~~~~~~~~--~~---h~~~v~~~~~~~ 346 (435)
T 1p22_A 283 TSTCEFVRTLN-G----HKRGIACLQYRDR-LVVSGSSD-----NTIRLWDIECGACLRVL--EG---HEELVRCIRFDN 346 (435)
T ss_dssp TTTCCEEEEEE-C----CSSCEEEEEEETT-EEEEEETT-----SCEEEEETTTCCEEEEE--CC---CSSCEEEEECCS
T ss_pred CCcCcEEEEEc-C----CCCcEEEEEeCCC-EEEEEeCC-----CeEEEEECCCCCEEEEE--eC---CcCcEEEEEecC
Confidence 98876433221 1 1112233344344 66666654 45889999876533211 11 111222334477
Q ss_pred EEEEEecCCCCCCcceEEEEECCC
Q 012184 217 NWYIVGGGDNNNGCQETIVLNMTK 240 (469)
Q Consensus 217 ~l~v~GG~~~~~~~~d~~~~d~~~ 240 (469)
..++.|+.++ .+.+||+.+
T Consensus 347 ~~l~sg~~dg-----~i~vwd~~~ 365 (435)
T 1p22_A 347 KRIVSGAYDG-----KIKVWDLVA 365 (435)
T ss_dssp SEEEEEETTS-----CEEEEEHHH
T ss_pred CEEEEEeCCC-----cEEEEECCC
Confidence 7888887543 477788644
No 56
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.97 E-value=0.14 Score=49.25 Aligned_cols=220 Identities=15% Similarity=0.133 Sum_probs=112.1
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 93 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~ 93 (469)
.+..||..++......... ......++.+ ++.+++.|+.++ .+..||+.++....
T Consensus 114 ~v~lw~~~~~~~~~~~~~~-----------------~~~~v~~v~~s~~~~~l~~~~~dg------~i~iwd~~~~~~~~ 170 (401)
T 4aez_A 114 NVYVWNADSGSVSALAETD-----------------ESTYVASVKWSHDGSFLSVGLGNG------LVDIYDVESQTKLR 170 (401)
T ss_dssp EEEEEETTTCCEEEEEECC-----------------TTCCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEE
T ss_pred eEEEeeCCCCcEeEeeecC-----------------CCCCEEEEEECCCCCEEEEECCCC------eEEEEECcCCeEEE
Confidence 6888899888766555431 1112223333 556666766432 38899998876544
Q ss_pred eecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEec
Q 012184 94 METSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG 173 (469)
Q Consensus 94 ~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG 173 (469)
.- . .......++.+++.+++.|+.+ ..+.+||+.+..-......+ ....-.++....++.+++.|+
T Consensus 171 ~~---~--~~~~~v~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~ 236 (401)
T 4aez_A 171 TM---A--GHQARVGCLSWNRHVLSSGSRS------GAIHHHDVRIANHQIGTLQG---HSSEVCGLAWRSDGLQLASGG 236 (401)
T ss_dssp EE---C--CCSSCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEEC---CSSCEEEEEECTTSSEEEEEE
T ss_pred Ee---c--CCCCceEEEEECCCEEEEEcCC------CCEEEEecccCcceeeEEcC---CCCCeeEEEEcCCCCEEEEEe
Confidence 33 1 1122233344466677777644 35888998743321111111 111112233333555777777
Q ss_pred CCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCC
Q 012184 174 CSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKG 251 (469)
Q Consensus 174 ~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~ 251 (469)
.+ +.+.+||+.+..-.... .. ....-.+++.. ++.+++.||.... ..+.+||+.+..-...-..
T Consensus 237 ~d-----~~v~iwd~~~~~~~~~~--~~--~~~~v~~~~~~p~~~~ll~~~~gs~d---~~i~i~d~~~~~~~~~~~~-- 302 (401)
T 4aez_A 237 ND-----NVVQIWDARSSIPKFTK--TN--HNAAVKAVAWCPWQSNLLATGGGTMD---KQIHFWNAATGARVNTVDA-- 302 (401)
T ss_dssp TT-----SCEEEEETTCSSEEEEE--CC--CSSCCCEEEECTTSTTEEEEECCTTT---CEEEEEETTTCCEEEEEEC--
T ss_pred CC-----CeEEEccCCCCCccEEe--cC--CcceEEEEEECCCCCCEEEEecCCCC---CEEEEEECCCCCEEEEEeC--
Confidence 54 46889998875433211 11 11112233333 3467777753222 3688999887654332211
Q ss_pred CCCCCCCCcceEEEEEcC-CcEEEEEec-cCCCCCceEEEEECCCCCC
Q 012184 252 RNPLASEGLSVCSAIIEG-EHHLVAFGG-YNGKYNNEVFVMRLKPRDI 297 (469)
Q Consensus 252 ~~p~~r~~~s~~~~~~~~-~~~l~v~GG-~~~~~~~~~~~~d~~~~~w 297 (469)
...+..+...+ +..+++.+| .++ .+.+||+.....
T Consensus 303 -------~~~v~~~~~s~~~~~l~~~~g~~dg----~i~v~~~~~~~~ 339 (401)
T 4aez_A 303 -------GSQVTSLIWSPHSKEIMSTHGFPDN----NLSIWSYSSSGL 339 (401)
T ss_dssp -------SSCEEEEEECSSSSEEEEEECTTTC----EEEEEEEETTEE
T ss_pred -------CCcEEEEEECCCCCeEEEEeecCCC----cEEEEecCCccc
Confidence 11233334444 345555544 333 577777765433
No 57
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=96.97 E-value=0.12 Score=47.95 Aligned_cols=152 Identities=13% Similarity=0.070 Sum_probs=74.3
Q ss_pred EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceE
Q 012184 115 RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS 194 (469)
Q Consensus 115 ~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~ 194 (469)
.+++.|+.+ ..+.+||+.+........ + ....-.+++...++.+++.|+.+ ..+.+||+.+..-.
T Consensus 186 ~~~~s~~~d------~~i~i~d~~~~~~~~~~~-~---h~~~v~~~~~s~~~~~l~s~s~D-----g~i~iwd~~~~~~~ 250 (340)
T 4aow_A 186 PIIVSCGWD------KLVKVWNLANCKLKTNHI-G---HTGYLNTVTVSPDGSLCASGGKD-----GQAMLWDLNEGKHL 250 (340)
T ss_dssp CEEEEEETT------SCEEEEETTTTEEEEEEC-C---CSSCEEEEEECTTSSEEEEEETT-----CEEEEEETTTTEEE
T ss_pred cEEEEEcCC------CEEEEEECCCCceeeEec-C---CCCcEEEEEECCCCCEEEEEeCC-----CeEEEEEeccCcee
Confidence 455555543 238889998877544321 1 11111233333356677777755 35788898766533
Q ss_pred eeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEE-eccCCCCCCCCCCCcceEEEEEcCCcEE
Q 012184 195 QPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSI-LTSVKGRNPLASEGLSVCSAIIEGEHHL 273 (469)
Q Consensus 195 ~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~-~~~~~~~~p~~r~~~s~~~~~~~~~~~l 273 (469)
.... ....-.+++...+..++.++.+ ..+.+||+.+..-.. +...............+..+...+++.+
T Consensus 251 ~~~~-----~~~~v~~~~~~~~~~~~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 320 (340)
T 4aow_A 251 YTLD-----GGDIINALCFSPNRYWLCAATG-----PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 320 (340)
T ss_dssp EEEE-----CSSCEEEEEECSSSSEEEEEET-----TEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE
T ss_pred eeec-----CCceEEeeecCCCCceeeccCC-----CEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE
Confidence 2211 1111223333344455555532 357788887665332 1111100000011122333444555667
Q ss_pred EEEeccCCCCCceEEEEECCCC
Q 012184 274 VAFGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 274 ~v~GG~~~~~~~~~~~~d~~~~ 295 (469)
++.||.++. +.+||+++.
T Consensus 321 l~sgs~Dg~----v~iW~~~tG 338 (340)
T 4aow_A 321 LFAGYTDNL----VRVWQVTIG 338 (340)
T ss_dssp EEEEETTSC----EEEEEEEC-
T ss_pred EEEEeCCCE----EEEEeCCCc
Confidence 778887663 777777554
No 58
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=96.93 E-value=0.15 Score=47.27 Aligned_cols=164 Identities=10% Similarity=0.039 Sum_probs=76.3
Q ss_pred CEEEEEeccCCCCCccCcEEEEECCC-CeEEEee--eCCCCCCCCCCceEEEEcCc-EEEEEecCCCCcccCcEEEEECC
Q 012184 114 SRLIIFGGEDRSRKLLNDVHFLDLET-MTWDAVE--VTQTPPAPRYDHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQ 189 (469)
Q Consensus 114 ~~lyi~GG~~~~~~~~~~v~~~d~~t-~~W~~~~--~~g~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~i~~~d~~ 189 (469)
..||+.+.. .+.+.+||+.+ .+...+. .. ..+....-..++...++ ++|+.+..+ +.+.+||+.
T Consensus 141 ~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~pdg~~l~~~~~~~-----~~i~~~~~~ 208 (343)
T 1ri6_A 141 RTLWVPALK------QDRICLFTVSDDGHLVAQDPAEV-TTVEGAGPRHMVFHPNEQYAYCVNELN-----SSVDVWELK 208 (343)
T ss_dssp SEEEEEEGG------GTEEEEEEECTTSCEEEEEEEEE-ECSTTCCEEEEEECTTSSEEEEEETTT-----TEEEEEESS
T ss_pred CEEEEecCC------CCEEEEEEecCCCceeeeccccc-ccCCCCCcceEEECCCCCEEEEEeCCC-----CEEEEEEec
Confidence 357665422 24589999887 6665432 11 11111111123333343 566665322 468889884
Q ss_pred --CCceEeeeecCCCCCC----CcceEEEEE-CC-EEEEEecCCCCCCcceEEEEECC--CCcEEEeccCCCCCCCCCCC
Q 012184 190 --TNEWSQPEIKGDLVTG----RAGHAGITI-DE-NWYIVGGGDNNNGCQETIVLNMT--KLAWSILTSVKGRNPLASEG 259 (469)
Q Consensus 190 --~~~W~~~~~~~~~p~~----r~~~~~~~~-~~-~l~v~GG~~~~~~~~d~~~~d~~--~~~W~~~~~~~~~~p~~r~~ 259 (469)
+..+.........+.. .....++.. ++ .+|+.+.. .+.+.+||+. +..+..+..++....
T Consensus 209 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~-----~~~i~v~d~~~~~~~~~~~~~~~~~~~----- 278 (343)
T 1ri6_A 209 DPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT-----ASLITVFSVSEDGSVLSKEGFQPTETQ----- 278 (343)
T ss_dssp CTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT-----TTEEEEEEECTTSCCEEEEEEEECSSS-----
T ss_pred CCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC-----CCEEEEEEEcCCCCceEEeeeecCCCc-----
Confidence 4555433221122221 111123333 23 56655432 2367788876 555665544332110
Q ss_pred cceEEEEEcC-CcEEEEEeccCCCCCceEEEEECCCCCCCCcccc
Q 012184 260 LSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIF 303 (469)
Q Consensus 260 ~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~~~~w~~~~~~ 303 (469)
...+...+ +.+||+.++.++ .-.+|.+|+.+..+..+..+
T Consensus 279 --~~~~~~s~dg~~l~~~~~~~~--~v~v~~~d~~~g~~~~~~~~ 319 (343)
T 1ri6_A 279 --PRGFNVDHSGKYLIAAGQKSH--HISVYEIVGEQGLLHEKGRY 319 (343)
T ss_dssp --CCCEEECTTSSEEEEECTTTC--EEEEEEEETTTTEEEEEEEE
T ss_pred --cceEEECCCCCEEEEecCCCC--eEEEEEEcCCCceeeEcccc
Confidence 11122333 345666554333 22355557767666554444
No 59
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.89 E-value=0.41 Score=49.77 Aligned_cols=125 Identities=14% Similarity=0.062 Sum_probs=70.6
Q ss_pred eeeEEECCEEEEEccccCCCCCcceEEEEECCCCe--EEEeecCCC--CC---CCCcceEEEEECCEEEEEeccCCCCCc
Q 012184 56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGK--VP---VARGGHSVTLVGSRLIIFGGEDRSRKL 128 (469)
Q Consensus 56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~--~p---~~r~~~~~~~~~~~lyi~GG~~~~~~~ 128 (469)
.+-++.++.||+.... +.++.+|..|++ |+.-..... .+ ......+.+..+++||+...
T Consensus 71 ~~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~------- 136 (677)
T 1kb0_A 71 ATPVVVDGIMYVSASW-------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW------- 136 (677)
T ss_dssp CCCEEETTEEEEECGG-------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------
T ss_pred eCCEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-------
Confidence 3445679999998652 349999999887 876542110 00 00122345557788887532
Q ss_pred cCcEEEEECCCCe--EEEeeeCCCCCCC-CCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc--eEee
Q 012184 129 LNDVHFLDLETMT--WDAVEVTQTPPAP-RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQP 196 (469)
Q Consensus 129 ~~~v~~~d~~t~~--W~~~~~~g~~p~~-r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~ 196 (469)
...++.+|..|++ |+.-... ..+.. ....+.++. ++.+|+..+.........++.||..+++ |..-
T Consensus 137 dg~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~~p~v~-~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 137 DGRLIALDAATGKEVWHQNTFE-GQKGSLTITGAPRVF-KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp TSEEEEEETTTCCEEEEEETTT-TCCSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEECCCCCEEeeecCCc-CcCcCcccccCcEEE-CCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence 3459999998875 7764210 11111 111122333 6767664432221234679999998876 8764
No 60
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.85 E-value=0.15 Score=53.86 Aligned_cols=178 Identities=13% Similarity=0.107 Sum_probs=88.3
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
++..+++|+.+ ..+.+||..++....... ... ....++.+ ++..++.|+.+ ..+.+||+.+
T Consensus 66 ~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~---~~~--~~v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~ 128 (814)
T 3mkq_A 66 RKNWIIVGSDD------FRIRVFNYNTGEKVVDFE---AHP--DYIRSIAVHPTKPYVLSGSDD------LTVKLWNWEN 128 (814)
T ss_dssp GGTEEEEEETT------SEEEEEETTTCCEEEEEE---CCS--SCEEEEEECSSSSEEEEEETT------SEEEEEEGGG
T ss_pred CCCEEEEEeCC------CeEEEEECCCCcEEEEEe---cCC--CCEEEEEEeCCCCEEEEEcCC------CEEEEEECCC
Confidence 55566666642 248999998887654331 111 11222233 34455566533 3488899877
Q ss_pred C-eEEEeeeCCCCCCCCCCceEEEEc-CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE---
Q 012184 140 M-TWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--- 214 (469)
Q Consensus 140 ~-~W~~~~~~g~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--- 214 (469)
+ ....... + ....-.+++... ++.++++|+.+ ..+.+||+.+..-...... ........++..
T Consensus 129 ~~~~~~~~~-~---~~~~v~~~~~~p~~~~~l~~~~~d-----g~v~vwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~ 196 (814)
T 3mkq_A 129 NWALEQTFE-G---HEHFVMCVAFNPKDPSTFASGCLD-----RTVKVWSLGQSTPNFTLTT---GQERGVNYVDYYPLP 196 (814)
T ss_dssp TSEEEEEEE-C---CSSCEEEEEEETTEEEEEEEEETT-----SEEEEEETTCSSCSEEEEC---CCTTCCCEEEECCST
T ss_pred CceEEEEEc-C---CCCcEEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcceeEEec---CCCCCEEEEEEEECC
Confidence 6 3332221 1 111112233333 45677777654 3588999876543222111 111122223332
Q ss_pred CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCC
Q 012184 215 DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG 281 (469)
Q Consensus 215 ~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~ 281 (469)
++.++++|+.+ ..+.+||+.+..-.. .+... ...+..+...+++.+++.|+.++
T Consensus 197 ~~~~l~~~~~d-----g~i~~~d~~~~~~~~--~~~~~------~~~v~~~~~~~~~~~l~~~~~dg 250 (814)
T 3mkq_A 197 DKPYMITASDD-----LTIKIWDYQTKSCVA--TLEGH------MSNVSFAVFHPTLPIIISGSEDG 250 (814)
T ss_dssp TCCEEEEECTT-----SEEEEEETTTTEEEE--EEECC------SSCEEEEEECSSSSEEEEEETTS
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCcEEE--EEcCC------CCCEEEEEEcCCCCEEEEEeCCC
Confidence 45677777643 358889987765322 11111 11233344445555667777554
No 61
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.83 E-value=0.055 Score=52.67 Aligned_cols=186 Identities=10% Similarity=0.013 Sum_probs=100.3
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE---CCEEEEEccccCCCCCcceEEEEECCCCeEE
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW---GTKLLILGGHYKKSSDSMIVRFIDLETNLCG 92 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~---~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~ 92 (469)
.++.+|+.+++...+... + . ....+.+ +..|++.+.... ...++.+|+.++...
T Consensus 204 ~i~~~d~~tg~~~~l~~~----------------~-~--~~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~ 260 (415)
T 2hqs_A 204 ALVIQTLANGAVRQVASF----------------P-R--HNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIR 260 (415)
T ss_dssp EEEEEETTTCCEEEEECC----------------S-S--CEEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEE
T ss_pred EEEEEECCCCcEEEeecC----------------C-C--cccCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEE
Confidence 788999988877654432 1 1 1222222 344655544322 235999999998876
Q ss_pred EeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEE
Q 012184 93 VMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIV 170 (469)
Q Consensus 93 ~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v 170 (469)
.+.. .+ .......+ +++.+++++... ....++++|+.+..-..+.. .......+....++..++
T Consensus 261 ~l~~---~~---~~~~~~~~spdg~~l~~~s~~~---g~~~i~~~d~~~~~~~~l~~-----~~~~~~~~~~spdG~~l~ 326 (415)
T 2hqs_A 261 QVTD---GR---SNNTEPTWFPDSQNLAFTSDQA---GRPQVYKVNINGGAPQRITW-----EGSQNQDADVSSDGKFMV 326 (415)
T ss_dssp ECCC---CS---SCEEEEEECTTSSEEEEEECTT---SSCEEEEEETTSSCCEECCC-----SSSEEEEEEECTTSSEEE
T ss_pred eCcC---CC---CcccceEECCCCCEEEEEECCC---CCcEEEEEECCCCCEEEEec-----CCCcccCeEECCCCCEEE
Confidence 6542 11 12223333 444444443221 13469999998877544431 111222223323554555
Q ss_pred EecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEecc
Q 012184 171 FGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 248 (469)
Q Consensus 171 ~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~ 248 (469)
+++.... ...++++|+.+.....+.. . . ...+.+.. ++..+++++.+.. ...++++|+.......++.
T Consensus 327 ~~~~~~g--~~~i~~~d~~~~~~~~l~~--~---~-~~~~~~~spdg~~l~~~s~~~~--~~~l~~~d~~g~~~~~l~~ 395 (415)
T 2hqs_A 327 MVSSNGG--QQHIAKQDLATGGVQVLSS--T---F-LDETPSLAPNGTMVIYSSSQGM--GSVLNLVSTDGRFKARLPA 395 (415)
T ss_dssp EEEECSS--CEEEEEEETTTCCEEECCC--S---S-SCEEEEECTTSSEEEEEEEETT--EEEEEEEETTSCCEEECCC
T ss_pred EEECcCC--ceEEEEEECCCCCEEEecC--C---C-CcCCeEEcCCCCEEEEEEcCCC--ccEEEEEECCCCcEEEeeC
Confidence 5543321 3579999999888765431 1 1 22233332 4566666654322 3479999998877666643
No 62
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.82 E-value=0.33 Score=45.48 Aligned_cols=70 Identities=11% Similarity=-0.017 Sum_probs=36.9
Q ss_pred CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCC--C
Q 012184 165 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTK--L 241 (469)
Q Consensus 165 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~--~ 241 (469)
++..++.|+.+ +.+.+||+.+.+-...-. . ... .-.+++.. ++.+++.| .+ ..+.+||+.. +
T Consensus 213 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~--~-~~~-~v~~~~~~~~~~~l~~~-~d-----~~i~i~~~~~~~~ 277 (372)
T 1k8k_C 213 NGSRVAWVSHD-----STVCLADADKKMAVATLA--S-ETL-PLLAVTFITESSLVAAG-HD-----CFPVLFTYDSAAG 277 (372)
T ss_dssp SSSEEEEEETT-----TEEEEEEGGGTTEEEEEE--C-SSC-CEEEEEEEETTEEEEEE-TT-----SSCEEEEEETTTT
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCceeEEEc--c-CCC-CeEEEEEecCCCEEEEE-eC-----CeEEEEEccCcCc
Confidence 55566666643 458899987765432211 1 111 11223333 55655554 32 2456777766 8
Q ss_pred cEEEeccC
Q 012184 242 AWSILTSV 249 (469)
Q Consensus 242 ~W~~~~~~ 249 (469)
.|..+..+
T Consensus 278 ~~~~~~~~ 285 (372)
T 1k8k_C 278 KLSFGGRL 285 (372)
T ss_dssp EEEECCCC
T ss_pred eEEEeecc
Confidence 88876443
No 63
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.16 Score=48.48 Aligned_cols=147 Identities=12% Similarity=0.047 Sum_probs=72.7
Q ss_pred ECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184 61 WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 61 ~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
..+..++.|+..+ .+..||+.+..-.... ...... -.+++.. ++.+++.|+.+ ..+.+||+.+
T Consensus 215 ~~~~~~~~~~~~g------~i~~~d~~~~~~~~~~---~~~~~~-i~~~~~~~~~~~l~~~~~d------~~i~i~d~~~ 278 (425)
T 1r5m_A 215 VDDDKFVIPGPKG------AIFVYQITEKTPTGKL---IGHHGP-ISVLEFNDTNKLLLSASDD------GTLRIWHGGN 278 (425)
T ss_dssp EETTEEEEECGGG------CEEEEETTCSSCSEEE---CCCSSC-EEEEEEETTTTEEEEEETT------SCEEEECSSS
T ss_pred cCCCEEEEEcCCC------eEEEEEcCCCceeeee---ccCCCc-eEEEEECCCCCEEEEEcCC------CEEEEEECCC
Confidence 3344466665432 3899998876432221 111111 1222222 45566666543 2488888877
Q ss_pred CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEE
Q 012184 140 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENW 218 (469)
Q Consensus 140 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l 218 (469)
......-. . ....-.++....++ +++.|+.+ ..+.+||+.+.+-..... . ....-.+++.. ++.+
T Consensus 279 ~~~~~~~~--~--~~~~i~~~~~~~~~-~l~~~~~d-----~~i~i~d~~~~~~~~~~~--~--~~~~i~~~~~s~~~~~ 344 (425)
T 1r5m_A 279 GNSQNCFY--G--HSQSIVSASWVGDD-KVISCSMD-----GSVRLWSLKQNTLLALSI--V--DGVPIFAGRISQDGQK 344 (425)
T ss_dssp BSCSEEEC--C--CSSCEEEEEEETTT-EEEEEETT-----SEEEEEETTTTEEEEEEE--C--TTCCEEEEEECTTSSE
T ss_pred CccceEec--C--CCccEEEEEECCCC-EEEEEeCC-----CcEEEEECCCCcEeEecc--c--CCccEEEEEEcCCCCE
Confidence 54322211 1 11122334444466 66666644 468999988765433221 1 11111222222 4567
Q ss_pred EEEecCCCCCCcceEEEEECCCCc
Q 012184 219 YIVGGGDNNNGCQETIVLNMTKLA 242 (469)
Q Consensus 219 ~v~GG~~~~~~~~d~~~~d~~~~~ 242 (469)
+++|+.+ ..+.+||+.+..
T Consensus 345 l~~~~~d-----g~i~i~~~~~~~ 363 (425)
T 1r5m_A 345 YAVAFMD-----GQVNVYDLKKLN 363 (425)
T ss_dssp EEEEETT-----SCEEEEECHHHH
T ss_pred EEEEECC-----CeEEEEECCCCc
Confidence 7776643 257788876544
No 64
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=96.75 E-value=0.087 Score=49.60 Aligned_cols=187 Identities=9% Similarity=0.040 Sum_probs=97.0
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
++.+++.||.+. .+..+|+.++.|....... ........++.+ ++.+++.|+.+. .+.++|..+
T Consensus 27 ~g~~las~~~D~------~i~iw~~~~~~~~~~~~~~--~~h~~~v~~~~~sp~g~~l~s~s~D~------~v~iw~~~~ 92 (345)
T 3fm0_A 27 AGTLLASCGGDR------RIRIWGTEGDSWICKSVLS--EGHQRTVRKVAWSPCGNYLASASFDA------TTCIWKKNQ 92 (345)
T ss_dssp TSSCEEEEETTS------CEEEEEEETTEEEEEEEEC--SSCSSCEEEEEECTTSSEEEEEETTS------CEEEEEECC
T ss_pred CCCEEEEEcCCC------eEEEEEcCCCcceeeeeec--cccCCcEEEEEECCCCCEEEEEECCC------cEEEEEccC
Confidence 667777777543 2788888888876433210 111112223333 456677776543 377788777
Q ss_pred CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc-eEeeeecCCCCCCCcceEEEEE-CCE
Q 012184 140 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE-WSQPEIKGDLVTGRAGHAGITI-DEN 217 (469)
Q Consensus 140 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~-W~~~~~~~~~p~~r~~~~~~~~-~~~ 217 (469)
..+..+...... ...-.++....++.+++.|+.+ ..+.++|+.+.. +..+........ .-.+++.. ++.
T Consensus 93 ~~~~~~~~~~~h--~~~v~~v~~sp~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~ 163 (345)
T 3fm0_A 93 DDFECVTTLEGH--ENEVKSVAWAPSGNLLATCSRD-----KSVWVWEVDEEDEYECVSVLNSHTQ--DVKHVVWHPSQE 163 (345)
T ss_dssp C-EEEEEEECCC--SSCEEEEEECTTSSEEEEEETT-----SCEEEEEECTTSCEEEEEEECCCCS--CEEEEEECSSSS
T ss_pred CCeEEEEEccCC--CCCceEEEEeCCCCEEEEEECC-----CeEEEEECCCCCCeEEEEEecCcCC--CeEEEEECCCCC
Confidence 766544321111 1111223333356677777755 357888876543 333321111111 11122222 456
Q ss_pred EEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC
Q 012184 218 WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK 282 (469)
Q Consensus 218 l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~ 282 (469)
+++.|+.++ .+.+||..+..|..+..+.+.. ..+..+...+++.+++.|+.++.
T Consensus 164 ~l~s~s~d~-----~i~~w~~~~~~~~~~~~~~~h~------~~v~~l~~sp~g~~l~s~s~D~~ 217 (345)
T 3fm0_A 164 LLASASYDD-----TVKLYREEEDDWVCCATLEGHE------STVWSLAFDPSGQRLASCSDDRT 217 (345)
T ss_dssp CEEEEETTS-----CEEEEEEETTEEEEEEEECCCS------SCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEEeCCC-----cEEEEEecCCCEEEEEEecCCC------CceEEEEECCCCCEEEEEeCCCe
Confidence 677776543 4778888888887654443322 22334445556677778887653
No 65
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.73 E-value=0.37 Score=44.73 Aligned_cols=184 Identities=11% Similarity=0.071 Sum_probs=94.4
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
++..++.|+.. ..+..||..++.-..... .. . ....++.+ ++++++.|+.+. .+.+||+.+
T Consensus 133 dg~~l~~g~~d------g~v~i~~~~~~~~~~~~~---~~-~-~~v~~~~~spdg~~lasg~~dg------~i~iwd~~~ 195 (321)
T 3ow8_A 133 DSQYLATGTHV------GKVNIFGVESGKKEYSLD---TR-G-KFILSIAYSPDGKYLASGAIDG------IINIFDIAT 195 (321)
T ss_dssp TSSEEEEECTT------SEEEEEETTTCSEEEEEE---CS-S-SCEEEEEECTTSSEEEEEETTS------CEEEEETTT
T ss_pred CCCEEEEEcCC------CcEEEEEcCCCceeEEec---CC-C-ceEEEEEECCCCCEEEEEcCCC------eEEEEECCC
Confidence 55666666543 238888888776432221 01 1 11222233 456667776543 488999988
Q ss_pred CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEE
Q 012184 140 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENW 218 (469)
Q Consensus 140 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l 218 (469)
.+-...- .+ ... .-.+++...++.+++.|+.+ ..+.+||+.+......- .+ ....-.+++.. ++..
T Consensus 196 ~~~~~~~-~~-h~~--~v~~l~~spd~~~l~s~s~d-----g~i~iwd~~~~~~~~~~-~~---h~~~v~~~~~sp~~~~ 262 (321)
T 3ow8_A 196 GKLLHTL-EG-HAM--PIRSLTFSPDSQLLVTASDD-----GYIKIYDVQHANLAGTL-SG---HASWVLNVAFCPDDTH 262 (321)
T ss_dssp TEEEEEE-CC-CSS--CCCEEEECTTSCEEEEECTT-----SCEEEEETTTCCEEEEE-CC---CSSCEEEEEECTTSSE
T ss_pred CcEEEEE-cc-cCC--ceeEEEEcCCCCEEEEEcCC-----CeEEEEECCCcceeEEE-cC---CCCceEEEEECCCCCE
Confidence 8643322 11 111 11233333466677777754 35889998776543321 11 11111122222 4567
Q ss_pred EEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEEC
Q 012184 219 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRL 292 (469)
Q Consensus 219 ~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~ 292 (469)
++.|+.++ .+.++|+.+..-.. .+.... -.+..+...+++..++.||.++. +.+||.
T Consensus 263 l~s~s~D~-----~v~iwd~~~~~~~~--~~~~h~------~~v~~v~~s~~g~~l~s~~~d~~----i~vwd~ 319 (321)
T 3ow8_A 263 FVSSSSDK-----SVKVWDVGTRTCVH--TFFDHQ------DQVWGVKYNGNGSKIVSVGDDQE----IHIYDC 319 (321)
T ss_dssp EEEEETTS-----CEEEEETTTTEEEE--EECCCS------SCEEEEEECTTSSEEEEEETTCC----EEEEEC
T ss_pred EEEEeCCC-----cEEEEeCCCCEEEE--EEcCCC------CcEEEEEECCCCCEEEEEeCCCe----EEEEeC
Confidence 77777532 47888987765332 222111 12333444555566777876653 666663
No 66
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.72 E-value=0.37 Score=44.70 Aligned_cols=188 Identities=13% Similarity=0.112 Sum_probs=97.4
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETM 140 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~ 140 (469)
++.+++.|+.+. .+..+|+.++.-......+ +.. . .+++.. ++..++.|+.+ ..+.+||+.+.
T Consensus 91 ~~~~l~s~s~D~------~i~lWd~~~~~~~~~~~~~--~~~-~-~~~~~spdg~~l~~g~~d------g~v~i~~~~~~ 154 (321)
T 3ow8_A 91 TLPIAASSSLDA------HIRLWDLENGKQIKSIDAG--PVD-A-WTLAFSPDSQYLATGTHV------GKVNIFGVESG 154 (321)
T ss_dssp SSSEEEEEETTS------EEEEEETTTTEEEEEEECC--TTC-C-CCEEECTTSSEEEEECTT------SEEEEEETTTC
T ss_pred CCCEEEEEeCCC------cEEEEECCCCCEEEEEeCC--Ccc-E-EEEEECCCCCEEEEEcCC------CcEEEEEcCCC
Confidence 345666666432 3888999888754332211 111 1 122222 45566666543 34888898876
Q ss_pred eEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEE
Q 012184 141 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWY 219 (469)
Q Consensus 141 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~ 219 (469)
.-..... + ....-.+++...++.+++.|+.+ ..+.+||+.+.+-...- .+ ...+ -.+++.. ++.++
T Consensus 155 ~~~~~~~-~---~~~~v~~~~~spdg~~lasg~~d-----g~i~iwd~~~~~~~~~~-~~-h~~~--v~~l~~spd~~~l 221 (321)
T 3ow8_A 155 KKEYSLD-T---RGKFILSIAYSPDGKYLASGAID-----GIINIFDIATGKLLHTL-EG-HAMP--IRSLTFSPDSQLL 221 (321)
T ss_dssp SEEEEEE-C---SSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEE-CC-CSSC--CCEEEECTTSCEE
T ss_pred ceeEEec-C---CCceEEEEEECCCCCEEEEEcCC-----CeEEEEECCCCcEEEEE-cc-cCCc--eeEEEEcCCCCEE
Confidence 5432211 0 11112233333466677777755 35889999877543221 11 1111 1122322 45677
Q ss_pred EEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184 220 IVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 220 v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~ 295 (469)
+.|+.++ .+.+||+.+..... .+.+.. ..+..+...+++.+++.|+.++ .+.+||+.+.
T Consensus 222 ~s~s~dg-----~i~iwd~~~~~~~~--~~~~h~------~~v~~~~~sp~~~~l~s~s~D~----~v~iwd~~~~ 280 (321)
T 3ow8_A 222 VTASDDG-----YIKIYDVQHANLAG--TLSGHA------SWVLNVAFCPDDTHFVSSSSDK----SVKVWDVGTR 280 (321)
T ss_dssp EEECTTS-----CEEEEETTTCCEEE--EECCCS------SCEEEEEECTTSSEEEEEETTS----CEEEEETTTT
T ss_pred EEEcCCC-----eEEEEECCCcceeE--EEcCCC------CceEEEEECCCCCEEEEEeCCC----cEEEEeCCCC
Confidence 7777532 47888987765432 122111 1233344455556777887665 3778887654
No 67
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.045 Score=57.91 Aligned_cols=194 Identities=12% Similarity=0.130 Sum_probs=100.8
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--C--CEEEEEeccCCCCCccCcEEEEEC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--G--SRLIIFGGEDRSRKLLNDVHFLDL 137 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~--~~lyi~GG~~~~~~~~~~v~~~d~ 137 (469)
++.+++.||.++ .+.+||+.+..+..+... ......-.++.+ + +.+++.|+.++ .+.+||+
T Consensus 20 dg~~latg~~dg------~I~vwd~~~~~~~~~~~l---~~h~~~V~~l~~s~~~~~~~l~s~s~Dg------~I~vwd~ 84 (753)
T 3jro_A 20 YGKRLATCSSDK------TIKIFEVEGETHKLIDTL---TGHEGPVWRVDWAHPKFGTILASCSYDG------KVLIWKE 84 (753)
T ss_dssp SSCCEEEEETTT------EEEEEEEETTEEEEEEEE---CCCSSCEEEEEECCTTSCSEEEEEETTS------CEEEEEE
T ss_pred CCCeEEEEECCC------cEEEEecCCCCCccceec---cCCcCceEEEEecCCCCCCEEEEEeCCC------eEEEEEC
Confidence 455666666432 378888877777766532 222222333333 2 56777776543 4889999
Q ss_pred CCCeEEEeeeCCCCCCCCCCceEEEE-cC--cEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE
Q 012184 138 ETMTWDAVEVTQTPPAPRYDHSAALH-AN--RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI 214 (469)
Q Consensus 138 ~t~~W~~~~~~g~~p~~r~~~~~~~~-~~--~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~ 214 (469)
.++.|..+..... ....-..+.+ .+ +.+++.|+.+ ..+.+||+.+..-.........+. .-.+++..
T Consensus 85 ~~~~~~~~~~~~~---h~~~V~~v~~sp~~~~~~l~sgs~d-----g~I~vwdl~~~~~~~~~~~~~~~~--~v~~l~~~ 154 (753)
T 3jro_A 85 ENGRWSQIAVHAV---HSASVNSVQWAPHEYGPLLLVASSD-----GKVSVVEFKENGTTSPIIIDAHAI--GVNSASWA 154 (753)
T ss_dssp ETTEEEEEEEECC---CSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEECCSSSCCCCEEEECCSS--CEEEEEEC
T ss_pred CCCcccccccccC---CCCCeEEEEECCCCCCCEEEEEeCC-----CcEEEEEeecCCCcceeEeecCCC--ceEEEEec
Confidence 9998876653221 1122222333 23 5577777754 358888887653211111001111 11122221
Q ss_pred --------------CCEEEEEecCCCCCCcceEEEEECCC--CcEEEeccCCCCCCCCCCCcceEEEEEcCC---cEEEE
Q 012184 215 --------------DENWYIVGGGDNNNGCQETIVLNMTK--LAWSILTSVKGRNPLASEGLSVCSAIIEGE---HHLVA 275 (469)
Q Consensus 215 --------------~~~l~v~GG~~~~~~~~d~~~~d~~~--~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~---~~l~v 275 (469)
++.+++.|+.++ .+.+||+.+ ..+..+..+.... ..+..+...++ +.+++
T Consensus 155 p~~~~~~~~~~~~~d~~~l~sgs~dg-----~I~iwd~~~~~~~~~~~~~~~~h~------~~V~~l~~sp~~~~~~~l~ 223 (753)
T 3jro_A 155 PATIEEDGEHNGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEGHS------DWVRDVAWSPTVLLRSYLA 223 (753)
T ss_dssp CCC---------CGGGCCEEEEETTS-----CEEEEEEETTTTEEEEEEEECCCS------SCEEEEEECCCCSSSEEEE
T ss_pred CcccccccccccCCCCCEEEEEECCC-----eEEEEeccCCcccceeeeeecCCC------CcEEEEEeccCCCCCCEEE
Confidence 246677776533 366676644 3444443332221 12334444555 68888
Q ss_pred EeccCCCCCceEEEEECCCC
Q 012184 276 FGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 276 ~GG~~~~~~~~~~~~d~~~~ 295 (469)
.||.++. +.+||+...
T Consensus 224 s~s~Dg~----I~iwd~~~~ 239 (753)
T 3jro_A 224 SVSQDRT----CIIWTQDNE 239 (753)
T ss_dssp EEESSSC----EEEEEESSS
T ss_pred EEecCCE----EEEecCCCC
Confidence 8887653 667776553
No 68
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=96.72 E-value=0.26 Score=51.23 Aligned_cols=153 Identities=11% Similarity=0.065 Sum_probs=78.1
Q ss_pred cCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCC-ceEeeeecCCCCCCC-
Q 012184 129 LNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN-EWSQPEIKGDLVTGR- 206 (469)
Q Consensus 129 ~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~-~W~~~~~~~~~p~~r- 206 (469)
...++++|+.+..-..+... .........+....|++.++++..+.......++++|+.+. ....+..... ....
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~-~~~~~ 310 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTG--EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD-KHYVE 310 (706)
T ss_dssp EEEEEEEETTTTEEEECCCC--SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC-SSCCC
T ss_pred eeEEEEEECCCCceEeeccC--CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC-CCeEC
Confidence 45699999999886555321 01111112222223554455544443334468999999988 6665532111 1100
Q ss_pred cceEEEEE---CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEE-EEEcC-CcEEEEEeccCC
Q 012184 207 AGHAGITI---DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCS-AIIEG-EHHLVAFGGYNG 281 (469)
Q Consensus 207 ~~~~~~~~---~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~-~~~~~-~~~l~v~GG~~~ 281 (469)
....++.. ++++++.+..+ ....+|.+|........+.. +. ..... ....+ +..|++.+..++
T Consensus 311 ~~~~~~~sp~~dg~~l~~~~~~---g~~~l~~~~~~~~~~~~l~~--~~-------~~v~~~~~~spdg~~l~~~~~~~~ 378 (706)
T 2z3z_A 311 PLHPLTFLPGSNNQFIWQSRRD---GWNHLYLYDTTGRLIRQVTK--GE-------WEVTNFAGFDPKGTRLYFESTEAS 378 (706)
T ss_dssp CCSCCEECTTCSSEEEEEECTT---SSCEEEEEETTSCEEEECCC--SS-------SCEEEEEEECTTSSEEEEEESSSC
T ss_pred ccCCceeecCCCCEEEEEEccC---CccEEEEEECCCCEEEecCC--CC-------eEEEeeeEEcCCCCEEEEEecCCC
Confidence 00122222 56666555433 24678999977776666532 11 11111 23344 345665555444
Q ss_pred CCCceEEEEECCCCC
Q 012184 282 KYNNEVFVMRLKPRD 296 (469)
Q Consensus 282 ~~~~~~~~~d~~~~~ 296 (469)
.....+|.+|+.+..
T Consensus 379 ~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 379 PLERHFYCIDIKGGK 393 (706)
T ss_dssp TTCBEEEEEETTCCC
T ss_pred CceEEEEEEEcCCCC
Confidence 334578888876654
No 69
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.70 E-value=0.2 Score=53.18 Aligned_cols=236 Identities=9% Similarity=0.069 Sum_probs=117.2
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 94 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~ 94 (469)
.+..||+.++.+..+...... +.......-+++... ++.|++. .. ..+ +..||+.+..+..+
T Consensus 283 Gl~~~~~~~~~~~~~~~~~~~----------~~~l~~~~i~~i~~D~~g~lWig-t~-~~G-----l~~~~~~~~~~~~~ 345 (795)
T 4a2l_A 283 DLNIYHEGTDSFASYSSNPVE----------NGSLSQRSVRSIFMDSQGGMWLG-TY-FGG-----LNYYHPIRNRFKNI 345 (795)
T ss_dssp CEEEEETTTTEEEEECCCTTS----------TTSCSSSCEEEEEECTTSCEEEE-ES-SSC-----EEEECGGGGSSEEE
T ss_pred hhheEcCCCCeEEEEecCCCC----------CCCCCCCcEEEEEEeCCcCEEEE-EC-CCC-----eEEeCCCcccceEE
Confidence 467788888888776543211 000111122233332 4556653 22 122 88899888877776
Q ss_pred ecCCCCCCCCc---ceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCC----CCCCCceEEEEcCc
Q 012184 95 ETSGKVPVARG---GHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP----APRYDHSAALHANR 166 (469)
Q Consensus 95 ~~~g~~p~~r~---~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p----~~r~~~~~~~~~~~ 166 (469)
.... .+.... -.+++.- ++.|++ |... .-+.+||+.+..+.........+ ....-++++...++
T Consensus 346 ~~~~-~~~~l~~~~V~~i~~d~~g~lWi-Gt~~------~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g 417 (795)
T 4a2l_A 346 RNIP-YKNSLSDNVVSCIVEDKDKNLWI-GTND------GGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK 417 (795)
T ss_dssp CCCT-TSSSCSCSSEEEEEECTTSCEEE-EESS------SCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT
T ss_pred cCCC-CCCCCCCCeeEEEEECCCCCEEE-EECC------CCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC
Confidence 5321 111111 1122222 356776 3221 23889999999888765321011 11222344444466
Q ss_pred E-EEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEE
Q 012184 167 Y-LIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWS 244 (469)
Q Consensus 167 ~-l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~ 244 (469)
. |++ |..+ .-+++||+.++++..+....+......-.+++.. ++.|+|-.. .-+++||+.+..|.
T Consensus 418 ~~lWi-gt~~-----~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-------~Gl~~~~~~~~~~~ 484 (795)
T 4a2l_A 418 SLVYI-GTHA-----GGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-------SALVRFNPEQRSFT 484 (795)
T ss_dssp TEEEE-EETT-----TEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-------SCEEEEETTTTEEE
T ss_pred CEEEE-EeCc-----CceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-------CceeEEeCCCCeEE
Confidence 6 665 3322 3589999999888776421111111122233322 355665432 24889999999998
Q ss_pred EeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCC
Q 012184 245 ILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI 297 (469)
Q Consensus 245 ~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w 297 (469)
.+..... +.......+..+..+.++.|++... .+ +++||+.+..+
T Consensus 485 ~~~~~~~--~~~~~~~~i~~i~~d~~g~lWigt~-~G-----l~~~~~~~~~~ 529 (795)
T 4a2l_A 485 TIEKEKD--GTPVVSKQITTLFRDSHKRLWIGGE-EG-----LSVFKQEGLDI 529 (795)
T ss_dssp ECCBCTT--CCBCCCCCEEEEEECTTCCEEEEES-SC-----EEEEEEETTEE
T ss_pred Ecccccc--ccccCCceEEEEEECCCCCEEEEeC-Cc-----eEEEeCCCCeE
Confidence 7653211 1111112233444555666766442 22 66666654443
No 70
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.69 E-value=0.64 Score=47.23 Aligned_cols=125 Identities=10% Similarity=0.102 Sum_probs=69.6
Q ss_pred eeeEEECCEEEEEccccCCCCCcceEEEEEC-CCCe--EEEeecCCCCCC--C---CcceEEEEECCEEEEEeccCCCCC
Q 012184 56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDL-ETNL--CGVMETSGKVPV--A---RGGHSVTLVGSRLIIFGGEDRSRK 127 (469)
Q Consensus 56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~-~t~~--W~~~~~~g~~p~--~---r~~~~~~~~~~~lyi~GG~~~~~~ 127 (469)
.+-++.++.||+.... ...++.+|. .+++ |+.-........ . ....+.+..+++||+...
T Consensus 56 ~~P~v~~g~vyv~~~~------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------ 123 (571)
T 2ad6_A 56 GAPLVIGDMMYVHSAF------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA------ 123 (571)
T ss_dssp SCCEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------
T ss_pred cccEEECCEEEEEeCC------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC------
Confidence 3445679999998652 124999999 7776 886442110000 0 112234567888887532
Q ss_pred ccCcEEEEECCCC--eEEEeeeCCCCCCC-CCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc--eEee
Q 012184 128 LLNDVHFLDLETM--TWDAVEVTQTPPAP-RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQP 196 (469)
Q Consensus 128 ~~~~v~~~d~~t~--~W~~~~~~g~~p~~-r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~ 196 (469)
...++.+|..|+ .|+.-.. ..+.. ....+.++. ++.+|+-.+.........++.||+.+++ |+.-
T Consensus 124 -dg~l~alD~~tG~~~W~~~~~--~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 124 -NGHLLALDAKTGKINWEVEVC--DPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp -TSEEEEEETTTCCEEEEEECC--CGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred -CCEEEEEECCCCCEEEEecCC--CCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 345999999887 4875421 11111 111122333 6767664432111123579999998765 8753
No 71
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.68 E-value=0.53 Score=45.92 Aligned_cols=146 Identities=10% Similarity=0.121 Sum_probs=77.7
Q ss_pred CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc
Q 012184 113 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE 192 (469)
Q Consensus 113 ~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~ 192 (469)
++.+++.|+.+ ..+.+||+.+..-...-. + ....-.++....++..++.|+.+ ..+.+||+.+.+
T Consensus 279 ~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~-~---~~~~v~~~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~ 343 (464)
T 3v7d_B 279 HGNIVVSGSYD------NTLIVWDVAQMKCLYILS-G---HTDRIYSTIYDHERKRCISASMD-----TTIRIWDLENGE 343 (464)
T ss_dssp ETTEEEEEETT------SCEEEEETTTTEEEEEEC-C---CSSCEEEEEEETTTTEEEEEETT-----SCEEEEETTTTE
T ss_pred CCCEEEEEeCC------CeEEEEECCCCcEEEEec-C---CCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc
Confidence 44556666543 248999998876543321 1 11122233344455566667654 358999998765
Q ss_pred eEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcE
Q 012184 193 WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHH 272 (469)
Q Consensus 193 W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~ 272 (469)
-...- .........+.+++..++.|+.+ ..+.+||+.+..-........ ......+.. ++.
T Consensus 344 ~~~~~-----~~h~~~v~~~~~~~~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~-------~~~~~~~~~--~~~ 404 (464)
T 3v7d_B 344 LMYTL-----QGHTALVGLLRLSDKFLVSAAAD-----GSIRGWDANDYSRKFSYHHTN-------LSAITTFYV--SDN 404 (464)
T ss_dssp EEEEE-----CCCSSCEEEEEECSSEEEEEETT-----SEEEEEETTTCCEEEEEECTT-------CCCEEEEEE--CSS
T ss_pred EEEEE-----eCCCCcEEEEEEcCCEEEEEeCC-----CcEEEEECCCCceeeeecCCC-------CccEEEEEe--CCC
Confidence 33211 11112223344566777777753 257888987755322211111 122223333 445
Q ss_pred EEEEeccCCCCCceEEEEECCCCCC
Q 012184 273 LVAFGGYNGKYNNEVFVMRLKPRDI 297 (469)
Q Consensus 273 l~v~GG~~~~~~~~~~~~d~~~~~w 297 (469)
+++.|+ + ..+.+||+.+..-
T Consensus 405 ~l~~~~-d----g~i~iwd~~~g~~ 424 (464)
T 3v7d_B 405 ILVSGS-E----NQFNIYNLRSGKL 424 (464)
T ss_dssp EEEEEE-T----TEEEEEETTTCCE
T ss_pred EEEEec-C----CeEEEEECCCCcE
Confidence 666776 3 3588999877643
No 72
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=96.65 E-value=0.14 Score=48.47 Aligned_cols=236 Identities=14% Similarity=0.091 Sum_probs=102.6
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCe-EE
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNL-CG 92 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~-W~ 92 (469)
.+..||+.++.|..+..... ......++.+ ++.+++.|+.+. .+..||+.++. |.
T Consensus 34 ~i~iw~~~~~~~~~~~~~~~----------------h~~~v~~~~~s~~~~~l~s~s~d~------~v~vwd~~~~~~~~ 91 (377)
T 3dwl_C 34 QVELYEQDGNGWKHARTFSD----------------HDKIVTCVDWAPKSNRIVTCSQDR------NAYVYEKRPDGTWK 91 (377)
T ss_dssp CBCEEEEETTEEEECCCBCC----------------CSSCEEEEEECTTTCCEEEEETTS------SEEEC------CCC
T ss_pred EEEEEEccCCceEEEEEEec----------------CCceEEEEEEeCCCCEEEEEeCCC------eEEEEEcCCCCcee
Confidence 67888998888877666521 1222223333 456677766432 28888888776 44
Q ss_pred EeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCe-EEEeeeCCCCCCCCCCceEEEEcCcEEE
Q 012184 93 VMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMT-WDAVEVTQTPPAPRYDHSAALHANRYLI 169 (469)
Q Consensus 93 ~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~-W~~~~~~g~~p~~r~~~~~~~~~~~~l~ 169 (469)
..... ........++.+ ++.+++.|+.+. .+.+||+.+.. |........ +....-.++....++.++
T Consensus 92 ~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l 161 (377)
T 3dwl_C 92 QTLVL---LRLNRAATFVRWSPNEDKFAVGSGAR------VISVCYFEQENDWWVSKHLKR-PLRSTILSLDWHPNNVLL 161 (377)
T ss_dssp CEEEC---CCCSSCEEEEECCTTSSCCEEEESSS------CEEECCC-----CCCCEEECS-SCCSCEEEEEECTTSSEE
T ss_pred eeeEe---cccCCceEEEEECCCCCEEEEEecCC------eEEEEEECCcccceeeeEeec-ccCCCeEEEEEcCCCCEE
Confidence 43321 111122223333 455666666433 37788877664 222211111 111122233333355677
Q ss_pred EEecCCCCcccCcEEEEECCCCceEeeee-------------cCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEE
Q 012184 170 VFGGCSHSIFFNDLHVLDLQTNEWSQPEI-------------KGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIV 235 (469)
Q Consensus 170 v~GG~~~~~~~~~i~~~d~~~~~W~~~~~-------------~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~ 235 (469)
+.|+.+ ..+.+||+.+........ .........-.+++.. ++.+++.|+.+ ..+.+
T Consensus 162 ~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~i~i 231 (377)
T 3dwl_C 162 AAGCAD-----RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHD-----SSVTI 231 (377)
T ss_dssp EEEESS-----SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETT-----TEEC-
T ss_pred EEEeCC-----CEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCC-----CcEEE
Confidence 777754 357888875433211100 0011111111122222 45666666643 24667
Q ss_pred EECCCCcE--EEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCCCCccccC
Q 012184 236 LNMTKLAW--SILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQ 304 (469)
Q Consensus 236 ~d~~~~~W--~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w~~~~~~~ 304 (469)
||+.+..- ..+..+.... ..+..+...+++.+++.|+.+ .+.+|+.....|.....+.
T Consensus 232 wd~~~~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~ 291 (377)
T 3dwl_C 232 AYPSAPEQPPRALITVKLSQ------LPLRSLLWANESAIVAAGYNY-----SPILLQGNESGWAHTRDLD 291 (377)
T ss_dssp CEECSTTSCEEECCCEECSS------SCEEEEEEEETTEEEEEESSS-----SEEEECCCC---CCSBCCC
T ss_pred EECCCCCCcceeeEeecCCC------CceEEEEEcCCCCEEEEEcCC-----cEEEEEeCCCceEEEeeec
Confidence 77765432 1122221111 112233333456777777533 3567777766666555543
No 73
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=96.63 E-value=0.55 Score=49.03 Aligned_cols=192 Identities=9% Similarity=-0.026 Sum_probs=97.2
Q ss_pred cceEEEEECCCCeEE--EeecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCccCcEEEEECCC------C--eEEEe
Q 012184 78 SMIVRFIDLETNLCG--VMETSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLET------M--TWDAV 145 (469)
Q Consensus 78 ~~~~~~~d~~t~~W~--~~~~~g~~p~~r~~~~~~~~-~~-~lyi~GG~~~~~~~~~~v~~~d~~t------~--~W~~~ 145 (469)
...++++++.+.... .+. .+ ...+....+...- ++ +|++....... ..++++++|+.+ . .+..+
T Consensus 207 ~~~v~~~~l~t~~~~~~~v~-~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~--~~~~l~~~d~~~~~~~~~~~~~~~~l 282 (710)
T 2xdw_A 207 HQKLYYHVLGTDQSEDILCA-EF-PDEPKWMGGAELSDDGRYVLLSIREGCD--PVNRLWYCDLQQESNGITGILKWVKL 282 (710)
T ss_dssp CCEEEEEETTSCGGGCEEEE-CC-TTCTTCEEEEEECTTSCEEEEEEECSSS--SCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred CCEEEEEECCCCcccceEEe-cc-CCCCeEEEEEEEcCCCCEEEEEEEccCC--CccEEEEEECcccccccCCccceEEe
Confidence 455999999887632 222 11 1112222222222 34 45544332211 257899999876 4 57776
Q ss_pred eeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCC---ceEeeeecCCCCCCCcceEEEEE-CCEEEEE
Q 012184 146 EVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN---EWSQPEIKGDLVTGRAGHAGITI-DENWYIV 221 (469)
Q Consensus 146 ~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~---~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~ 221 (469)
... .. ........+++.||+.+..+. ....++++|+.+. .|..+.. ..+. .....++.. ++.+++.
T Consensus 283 ~~~----~~-~~~~~~s~dg~~l~~~s~~~~--~~~~l~~~d~~~~~~~~~~~l~~--~~~~-~~~~~~~~~~~~~lv~~ 352 (710)
T 2xdw_A 283 IDN----FE-GEYDYVTNEGTVFTFKTNRHS--PNYRLINIDFTDPEESKWKVLVP--EHEK-DVLEWVACVRSNFLVLC 352 (710)
T ss_dssp ECS----SS-SCEEEEEEETTEEEEEECTTC--TTCEEEEEETTSCCGGGCEEEEC--CCSS-CEEEEEEEETTTEEEEE
T ss_pred eCC----CC-cEEEEEeccCCEEEEEECCCC--CCCEEEEEeCCCCCcccceeccC--CCCC-CeEEEEEEEcCCEEEEE
Confidence 521 11 112223334667888765432 2357999999875 5887642 1111 122234445 5677766
Q ss_pred ecCCCCCCcceEEEEECCCCc-EEEeccCCCCCCCCCCCcceEEEEEcCC-cEEEEEeccCCCCCceEEEEECCCCC
Q 012184 222 GGGDNNNGCQETIVLNMTKLA-WSILTSVKGRNPLASEGLSVCSAIIEGE-HHLVAFGGYNGKYNNEVFVMRLKPRD 296 (469)
Q Consensus 222 GG~~~~~~~~d~~~~d~~~~~-W~~~~~~~~~~p~~r~~~s~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~d~~~~~ 296 (469)
...+ ....++++|+.++. ...+.. +. + .+..+...++ ..+++. ..+......+|.||+.+..
T Consensus 353 ~~~~---g~~~l~~~~~~~g~~~~~l~~---~~-----~-~v~~~~~s~d~~~l~~~-~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 353 YLHD---VKNTLQLHDLATGALLKIFPL---EV-----G-SVVGYSGQKKDTEIFYQ-FTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEET---TEEEEEEEETTTCCEEEEECC---CS-----S-EEEEEECCTTCSEEEEE-EECSSCCCEEEEEETTSSS
T ss_pred EEEC---CEEEEEEEECCCCCEEEecCC---CC-----c-eEEEEecCCCCCEEEEE-EeCCCCCCEEEEEECCCCc
Confidence 5432 24578999985544 344431 11 1 2222333332 333332 2223335679999987765
No 74
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=96.59 E-value=0.19 Score=46.62 Aligned_cols=147 Identities=15% Similarity=0.054 Sum_probs=70.6
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 93 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~ 93 (469)
.+.++|+.+++....-..+ .....+.++.. ++.+|+.+.. ...+++||+.+++-..
T Consensus 22 ~v~~~d~~~~~~~~~~~~~----------------~~~~~~~~~~s~dg~~~~v~~~~------~~~i~~~d~~t~~~~~ 79 (349)
T 1jmx_B 22 NLHVVDVASDTVYKSCVMP----------------DKFGPGTAMMAPDNRTAYVLNNH------YGDIYGIDLDTCKNTF 79 (349)
T ss_dssp EEEEEETTTTEEEEEEECS----------------SCCSSCEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEE
T ss_pred eEEEEECCCCcEEEEEecC----------------CCCCCceeEECCCCCEEEEEeCC------CCcEEEEeCCCCcEEE
Confidence 7899999988765433331 10012233322 4457777532 2349999999987654
Q ss_pred eecCCCCCC--CCcceEEEEE-CC-EEEEEecc--CCCCC---ccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEc
Q 012184 94 METSGKVPV--ARGGHSVTLV-GS-RLIIFGGE--DRSRK---LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA 164 (469)
Q Consensus 94 ~~~~g~~p~--~r~~~~~~~~-~~-~lyi~GG~--~~~~~---~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~ 164 (469)
....+..|. ...-+.++.. ++ .||+.+.. ..... ..+.+++||+.++.-........ .++.-.++....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~ 157 (349)
T 1jmx_B 80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--MPRQVYLMRAAD 157 (349)
T ss_dssp EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--CCSSCCCEEECT
T ss_pred EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--CCCcccceeECC
Confidence 332111111 1111222322 34 45554321 00000 13579999988743211100011 122233344444
Q ss_pred CcEEEEEecCCCCcccCcEEEEECCCCceE
Q 012184 165 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWS 194 (469)
Q Consensus 165 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~ 194 (469)
++++|+.+ ++++++|+.+.+-.
T Consensus 158 dg~l~~~~--------~~i~~~d~~~~~~~ 179 (349)
T 1jmx_B 158 DGSLYVAG--------PDIYKMDVKTGKYT 179 (349)
T ss_dssp TSCEEEES--------SSEEEECTTTCCEE
T ss_pred CCcEEEcc--------CcEEEEeCCCCcee
Confidence 55677632 24888998776643
No 75
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=96.57 E-value=0.27 Score=47.43 Aligned_cols=187 Identities=11% Similarity=0.055 Sum_probs=91.9
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
++.+++.||.+.. +..||+.+..-... +........++.+ ++..++.|+.+ ..+.+||+.+
T Consensus 161 ~~~~l~sgs~D~~------i~iwd~~~~~~~~~-----~~~h~~~V~~v~~~p~~~~l~s~s~D------~~i~~wd~~~ 223 (410)
T 1vyh_C 161 SGKLLASCSADMT------IKLWDFQGFECIRT-----MHGHDHNVSSVSIMPNGDHIVSASRD------KTIKMWEVQT 223 (410)
T ss_dssp TSSEEEEEETTSC------CCEEETTSSCEEEC-----CCCCSSCEEEEEECSSSSEEEEEETT------SEEEEEETTT
T ss_pred CCCEEEEEeCCCe------EEEEeCCCCceeEE-----EcCCCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCC
Confidence 5667777775432 66778776543221 1111122233333 34566666644 3488999988
Q ss_pred CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEE------
Q 012184 140 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT------ 213 (469)
Q Consensus 140 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~------ 213 (469)
+.....-. +. ...-..+....++.+++.|+.+ +.+.++|+.+......- .+ ... .-.+++.
T Consensus 224 ~~~~~~~~-~h---~~~v~~~~~~~~g~~l~s~s~D-----~~v~vwd~~~~~~~~~~-~~-h~~--~v~~~~~~~~~~~ 290 (410)
T 1vyh_C 224 GYCVKTFT-GH---REWVRMVRPNQDGTLIASCSND-----QTVRVWVVATKECKAEL-RE-HRH--VVECISWAPESSY 290 (410)
T ss_dssp CCEEEEEE-CC---SSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEEEE-CC-CSS--CEEEEEECCSCGG
T ss_pred CcEEEEEe-CC---CccEEEEEECCCCCEEEEEcCC-----CeEEEEECCCCceeeEe-cC-CCc--eEEEEEEcCcccc
Confidence 76533221 11 1111122223356677777755 35778888766543211 00 000 0001111
Q ss_pred ---------------ECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEec
Q 012184 214 ---------------IDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGG 278 (469)
Q Consensus 214 ---------------~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG 278 (469)
..+.+++.|+.+ ..+.+||+.+..-. ..+.+.. ..+..+...+++.+++.||
T Consensus 291 ~~~~~~~~~~~~~~~~~g~~l~sgs~D-----~~i~iwd~~~~~~~--~~~~~h~------~~v~~v~~~~~g~~l~s~s 357 (410)
T 1vyh_C 291 SSISEATGSETKKSGKPGPFLLSGSRD-----KTIKMWDVSTGMCL--MTLVGHD------NWVRGVLFHSGGKFILSCA 357 (410)
T ss_dssp GGGGGCCSCC-------CCEEEEEETT-----SEEEEEETTTTEEE--EEEECCS------SCEEEEEECSSSSCEEEEE
T ss_pred cchhhhccccccccCCCCCEEEEEeCC-----CeEEEEECCCCceE--EEEECCC------CcEEEEEEcCCCCEEEEEe
Confidence 124566666643 35888998776422 1222111 1223334455556677777
Q ss_pred cCCCCCceEEEEECCCC
Q 012184 279 YNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 279 ~~~~~~~~~~~~d~~~~ 295 (469)
.++ .+.+||+.+.
T Consensus 358 ~D~----~i~vwd~~~~ 370 (410)
T 1vyh_C 358 DDK----TLRVWDYKNK 370 (410)
T ss_dssp TTT----EEEEECCTTS
T ss_pred CCC----eEEEEECCCC
Confidence 655 4778887554
No 76
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=96.56 E-value=0.3 Score=46.35 Aligned_cols=205 Identities=8% Similarity=0.041 Sum_probs=95.2
Q ss_pred EEEEEccccCCCCCcceEEEEECCCCe------EEEeecCCCCCCC---CcceEEEEE-----CCEE-EEEeccCCCCCc
Q 012184 64 KLLILGGHYKKSSDSMIVRFIDLETNL------CGVMETSGKVPVA---RGGHSVTLV-----GSRL-IIFGGEDRSRKL 128 (469)
Q Consensus 64 ~iy~~GG~~~~~~~~~~~~~~d~~t~~------W~~~~~~g~~p~~---r~~~~~~~~-----~~~l-yi~GG~~~~~~~ 128 (469)
.+++.|+.++ .+..||+.++. +..+.. .+.. ..-.+++.. ++.. ++.|+.+
T Consensus 82 ~~l~s~~~dg------~i~iw~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d----- 147 (397)
T 1sq9_A 82 CLVATTSFSG------DLLFYRITREDETKKVIFEKLDL---LDSDMKKHSFWALKWGASNDRLLSHRLVATDVK----- 147 (397)
T ss_dssp EEEEEEETTS------CEEEEEEEECTTTCCEEEEEECC---SCTTGGGSCEEEEEEECCC----CEEEEEEETT-----
T ss_pred cEEEEEcCCC------CEEEEEccCCcccccccceeecc---cccccCCCcEEEEEEeeccCCCCceEEEEEeCC-----
Confidence 7777776532 27788877666 666642 1111 112223333 3445 6776654
Q ss_pred cCcEEEEECCC------Ce---EE---Eeee--CCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceE
Q 012184 129 LNDVHFLDLET------MT---WD---AVEV--TQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS 194 (469)
Q Consensus 129 ~~~v~~~d~~t------~~---W~---~~~~--~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~ 194 (469)
..+.+||+.+ .. |. .+.. .........-.++....++ +++.|+.+ ..+.+||+.+..-.
T Consensus 148 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d-----g~i~i~d~~~~~~~ 220 (397)
T 1sq9_A 148 -GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN-----GTVQISELSTLRPL 220 (397)
T ss_dssp -SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT-----SEEEEEETTTTEEE
T ss_pred -CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC-----CcEEEEECCCCcee
Confidence 2477777665 21 11 1110 0000112222344444466 77776644 46899999876543
Q ss_pred eeeecCC-CC-CCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEE-eccCC--CCCCCCC--CCcceEEEE
Q 012184 195 QPEIKGD-LV-TGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSI-LTSVK--GRNPLAS--EGLSVCSAI 266 (469)
Q Consensus 195 ~~~~~~~-~p-~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~-~~~~~--~~~p~~r--~~~s~~~~~ 266 (469)
..-.... .+ ....-.+++.. ++.+++.|+.++ ....+.+||+.+..-.. +.... ...+... ....+..+.
T Consensus 221 ~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~--~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 298 (397)
T 1sq9_A 221 YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN--SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 298 (397)
T ss_dssp EEEECCC---CCCCCEEEEEECSSTTEEEEEEEET--TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE
T ss_pred EEEeccccccccCCccceEEECCCCCEEEEEecCC--CCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEE
Confidence 3221100 10 01112223322 456677766431 11468899987664322 21100 0000000 112333444
Q ss_pred EcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184 267 IEGEHHLVAFGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 267 ~~~~~~l~v~GG~~~~~~~~~~~~d~~~~ 295 (469)
..+++.+++.|+.++ .+.+||+.+.
T Consensus 299 ~~~~~~~l~~~~~dg----~i~iwd~~~~ 323 (397)
T 1sq9_A 299 FNDSGETLCSAGWDG----KLRFWDVKTK 323 (397)
T ss_dssp ECSSSSEEEEEETTS----EEEEEETTTT
T ss_pred ECCCCCEEEEEeCCC----eEEEEEcCCC
Confidence 455556677777554 5888888654
No 77
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=96.54 E-value=0.62 Score=44.92 Aligned_cols=222 Identities=15% Similarity=0.121 Sum_probs=107.0
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 93 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~ 93 (469)
.|.++|..+++-..+-... .....-.++.+ ++..++.|+.++ .+..+|+.+++-..
T Consensus 126 tV~lWd~~tg~~~~~~~~~----------------~~~~~V~sv~fspdg~~lasgs~Dg------~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 126 SVYLWSASSGDILQLLQME----------------QPGEYISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRLR 183 (420)
T ss_dssp EEEEEETTTCCEEEEEECC----------------STTCCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEE
T ss_pred EEEEEECCCCCEEEEEEec----------------CCCCcEEEEEECCCCCEEEEEECCC------eEEEEEcCCCcEEE
Confidence 6888899888766554431 11112233333 566777776543 28899998886443
Q ss_pred eecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEec
Q 012184 94 METSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG 173 (469)
Q Consensus 94 ~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG 173 (469)
.. .... ....+...++.+++.|+.+. .+..+|..+.........+. ......+....++..++.|+
T Consensus 184 ~~---~~h~--~~v~~~s~~~~~l~sgs~d~------~i~~~d~~~~~~~~~~~~~h---~~~~~~~~~~~~g~~l~s~~ 249 (420)
T 4gga_A 184 NM---TSHS--ARVGSLSWNSYILSSGSRSG------HIHHHDVRVAEHHVATLSGH---SQEVCGLRWAPDGRHLASGG 249 (420)
T ss_dssp EE---CCCS--SCEEEEEEETTEEEEEETTS------EEEEEETTSSSCEEEEEECC---SSCEEEEEECTTSSEEEEEE
T ss_pred EE---eCCC--CceEEEeeCCCEEEEEeCCC------ceeEeeecccceeeEEeccc---ccceeeeeecCCCCeeeeee
Confidence 32 1122 22334455667777776543 36777766544332221111 11111222223455666666
Q ss_pred CCCCcccCcEEEEECCCCce--EeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccC
Q 012184 174 CSHSIFFNDLHVLDLQTNEW--SQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSV 249 (469)
Q Consensus 174 ~~~~~~~~~i~~~d~~~~~W--~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~ 249 (469)
.+ +.+.+++..+..- ..+..... ....-.+++.. +..+++.+|...+ ..+.+||+.+..-......
T Consensus 250 ~D-----~~v~i~~~~~~~~~~~~~~~~~~--~~~~V~~~~~~p~~~~~la~~~gs~D---~~I~iwd~~t~~~~~~~~~ 319 (420)
T 4gga_A 250 ND-----NLVNVWPSAPGEGGWVPLQTFTQ--HQGAVKAVAWCPWQSNVLATGGGTSD---RHIRIWNVCSGACLSAVDA 319 (420)
T ss_dssp TT-----SCEEEEESSCCSSCSCCSEEECC--CSSCEEEEEECTTCTTEEEEEECTTT---CEEEEEETTTTEEEEEEEC
T ss_pred cc-----ccceEEeeccccccceeeeeecc--cCCceeeeeeCCCcccEEEEEeecCC---CEEEEEeCCccccceeecc
Confidence 44 3577777765431 11111101 11111122222 3456555543222 2577889988764432211
Q ss_pred CCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECCCC
Q 012184 250 KGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 250 ~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~~~ 295 (469)
. .........+ ...+++.+|.. .+.+.+||..+.
T Consensus 320 ~---------~~v~~~~~~~~~~~lv~~sg~~---d~~I~iwd~~~~ 354 (420)
T 4gga_A 320 H---------SQVCSILWSPHYKELISGHGFA---QNQLVIWKYPTM 354 (420)
T ss_dssp S---------SCEEEEEEETTTTEEEEEECTT---TCCEEEEETTTC
T ss_pred c---------cceeeeeecCCCCeEEEEEecC---CCEEEEEECCCC
Confidence 1 1122222222 45666655542 234888887654
No 78
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.53 E-value=0.52 Score=43.97 Aligned_cols=192 Identities=16% Similarity=0.085 Sum_probs=94.6
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCe--EEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
++.+++.||.+ ..+..||+.+.. ....... .............-++. ++.|+.+ ..+.+||+.+
T Consensus 108 ~~~~l~s~~~d------~~v~iw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~-l~s~s~d------~~i~~wd~~~ 173 (340)
T 1got_B 108 SGNYVACGGLD------NICSIYNLKTREGNVRVSREL-AGHTGYLSCCRFLDDNQ-IVTSSGD------TTCALWDIET 173 (340)
T ss_dssp TSSEEEEEETT------CEEEEEETTTCSBSCEEEEEE-ECCSSCEEEEEEEETTE-EEEEETT------SCEEEEETTT
T ss_pred CCCEEEEEeCC------CeEEEEECccCCCcceeEEEe-cCCCccEEEEEECCCCc-EEEEECC------CcEEEEECCC
Confidence 55666677643 237888887652 1111100 00111111111112455 4455433 3488999988
Q ss_pred CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEE
Q 012184 140 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENW 218 (469)
Q Consensus 140 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l 218 (469)
......- .+ ....-.++....++.+++.|+.+ ..+.++|+.+..-...- .+ ....-.+++.. ++.+
T Consensus 174 ~~~~~~~-~~---h~~~v~~~~~~~~~~~l~sg~~d-----~~v~~wd~~~~~~~~~~-~~---h~~~v~~v~~~p~~~~ 240 (340)
T 1got_B 174 GQQTTTF-TG---HTGDVMSLSLAPDTRLFVSGACD-----ASAKLWDVREGMCRQTF-TG---HESDINAICFFPNGNA 240 (340)
T ss_dssp TEEEEEE-CC---CSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCSEEEEE-CC---CSSCEEEEEECTTSSE
T ss_pred CcEEEEE-cC---CCCceEEEEECCCCCEEEEEeCC-----CcEEEEECCCCeeEEEE-cC---CcCCEEEEEEcCCCCE
Confidence 8754332 11 11112233333456677777755 35888998776533211 11 11111122322 4567
Q ss_pred EEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184 219 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 219 ~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~ 295 (469)
++.|+.++ .+.+||+.+..-... ..... ....+..+...+++.+++.|+.++ .+.+||+.+.
T Consensus 241 l~s~s~d~-----~v~iwd~~~~~~~~~--~~~~~----~~~~v~~~~~s~~g~~l~~g~~d~----~i~vwd~~~~ 302 (340)
T 1got_B 241 FATGSDDA-----TCRLFDLRADQELMT--YSHDN----IICGITSVSFSKSGRLLLAGYDDF----NCNVWDALKA 302 (340)
T ss_dssp EEEEETTS-----CEEEEETTTTEEEEE--ECCTT----CCSCEEEEEECTTSSEEEEEETTS----EEEEEETTTC
T ss_pred EEEEcCCC-----cEEEEECCCCcEEEE--EccCC----cccceEEEEECCCCCEEEEECCCC----eEEEEEcccC
Confidence 77777432 477889877643221 11110 112334445556667788887654 4888887543
No 79
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=96.52 E-value=0.36 Score=46.30 Aligned_cols=192 Identities=11% Similarity=0.058 Sum_probs=96.6
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
++.+++.|+.++ .+..||+.++.-.... ........++.+ ++.+++.|+.+ ..+.+||+.+
T Consensus 108 ~~~~l~~~~~dg------~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~s~s~d------~~i~iwd~~~ 170 (420)
T 3vl1_A 108 QMRRFILGTTEG------DIKVLDSNFNLQREID-----QAHVSEITKLKFFPSGEALISSSQD------MQLKIWSVKD 170 (420)
T ss_dssp SSCEEEEEETTS------CEEEECTTSCEEEEET-----TSSSSCEEEEEECTTSSEEEEEETT------SEEEEEETTT
T ss_pred CCCEEEEEECCC------CEEEEeCCCcceeeec-----ccccCccEEEEECCCCCEEEEEeCC------CeEEEEeCCC
Confidence 667777776432 3888998877644332 111122223333 45566666643 3488999887
Q ss_pred CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEE------
Q 012184 140 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT------ 213 (469)
Q Consensus 140 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~------ 213 (469)
.+-...-. + ....-.++....++..++.|+.+ ..+.+||+.+.+-.........+. ..-.+++.
T Consensus 171 ~~~~~~~~-~---h~~~v~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~ 240 (420)
T 3vl1_A 171 GSNPRTLI-G---HRATVTDIAIIDRGRNVLSASLD-----GTIRLWECGTGTTIHTFNRKENPH-DGVNSIALFVGTDR 240 (420)
T ss_dssp CCCCEEEE-C---CSSCEEEEEEETTTTEEEEEETT-----SCEEEEETTTTEEEEEECBTTBTT-CCEEEEEEEECCCS
T ss_pred CcCceEEc-C---CCCcEEEEEEcCCCCEEEEEcCC-----CcEEEeECCCCceeEEeecCCCCC-CCccEEEEecCCcc
Confidence 64222110 1 11112233333455566677654 358888988765332211100011 11111111
Q ss_pred ----------------ECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcE-EEEE
Q 012184 214 ----------------IDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHH-LVAF 276 (469)
Q Consensus 214 ----------------~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~-l~v~ 276 (469)
-++.+++.|+.+ ..+.+||+.+..-.... ... ....+..+...+++. +++.
T Consensus 241 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~--~~~-----~~~~v~~~~~~~~~~~~l~~ 308 (420)
T 3vl1_A 241 QLHEISTSKKNNLEFGTYGKYVIAGHVS-----GVITVHNVFSKEQTIQL--PSK-----FTCSCNSLTVDGNNANYIYA 308 (420)
T ss_dssp SCGGGCCCCCCTTCSSCTTEEEEEEETT-----SCEEEEETTTCCEEEEE--CCT-----TSSCEEEEEECSSCTTEEEE
T ss_pred eeeecccCcccceEEcCCCCEEEEEcCC-----CeEEEEECCCCceeEEc--ccc-----cCCCceeEEEeCCCCCEEEE
Confidence 145677776643 24789998776532211 110 112233444455444 7777
Q ss_pred eccCCCCCceEEEEECCCCC
Q 012184 277 GGYNGKYNNEVFVMRLKPRD 296 (469)
Q Consensus 277 GG~~~~~~~~~~~~d~~~~~ 296 (469)
|+.++ .+.+||+.+..
T Consensus 309 g~~dg----~i~vwd~~~~~ 324 (420)
T 3vl1_A 309 GYENG----MLAQWDLRSPE 324 (420)
T ss_dssp EETTS----EEEEEETTCTT
T ss_pred EeCCC----eEEEEEcCCCc
Confidence 77654 58889987653
No 80
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=96.52 E-value=0.22 Score=46.07 Aligned_cols=185 Identities=10% Similarity=0.026 Sum_probs=88.8
Q ss_pred eEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCccCc-EEEEECCCCe-EEEeeeCCCCCCCC
Q 012184 80 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKLLND-VHFLDLETMT-WDAVEVTQTPPAPR 155 (469)
Q Consensus 80 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~lyi~GG~~~~~~~~~~-v~~~d~~t~~-W~~~~~~g~~p~~r 155 (469)
.+++||+.++........+.. -+.++.. ++ .||+.+.. .+. +.+|++.... ...... ...+...
T Consensus 109 ~i~v~d~~~~~~~~~~~~~~~-----~~~~~~spdg~~l~~~~~~------~~~~i~~~~~~~~g~~~~~~~-~~~~~~~ 176 (331)
T 3u4y_A 109 NMQSYSFLKNKFISTIPIPYD-----AVGIAISPNGNGLILIDRS------SANTVRRFKIDADGVLFDTGQ-EFISGGT 176 (331)
T ss_dssp EEEEEETTTTEEEEEEECCTT-----EEEEEECTTSSCEEEEEET------TTTEEEEEEECTTCCEEEEEE-EEECSSS
T ss_pred cEEEEECCCCCeEEEEECCCC-----ccceEECCCCCEEEEEecC------CCceEEEEEECCCCcEeecCC-ccccCCC
Confidence 599999999886554422211 1333333 33 57766542 234 6667655422 111100 0011111
Q ss_pred CCceEEEEcCc-EEEEEecCCCCcccCcEEEEECCCCce---EeeeecCCCCCCCcceEEEEE-CCE-EEEEecCCCCCC
Q 012184 156 YDHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNEW---SQPEIKGDLVTGRAGHAGITI-DEN-WYIVGGGDNNNG 229 (469)
Q Consensus 156 ~~~~~~~~~~~-~l~v~GG~~~~~~~~~i~~~d~~~~~W---~~~~~~~~~p~~r~~~~~~~~-~~~-l~v~GG~~~~~~ 229 (469)
....++...++ ++|+.+.. .+.+.+||+.+.+. ...- +.+.....++.. +++ +|+....
T Consensus 177 ~~~~~~~spdg~~l~v~~~~-----~~~v~v~d~~~~~~~~~~~~~-----~~~~~~~~~~~spdg~~l~v~~~~----- 241 (331)
T 3u4y_A 177 RPFNITFTPDGNFAFVANLI-----GNSIGILETQNPENITLLNAV-----GTNNLPGTIVVSRDGSTVYVLTES----- 241 (331)
T ss_dssp SEEEEEECTTSSEEEEEETT-----TTEEEEEECSSTTSCEEEEEE-----ECSSCCCCEEECTTSSEEEEECSS-----
T ss_pred CccceEECCCCCEEEEEeCC-----CCeEEEEECCCCcccceeeec-----cCCCCCceEEECCCCCEEEEEEcC-----
Confidence 12333333344 57776533 25699999987775 2211 111222233333 344 6665431
Q ss_pred cceEEEEECCCCcEEEeccCCCCCC-CCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECCCC
Q 012184 230 CQETIVLNMTKLAWSILTSVKGRNP-LASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 230 ~~d~~~~d~~~~~W~~~~~~~~~~p-~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~~~ 295 (469)
.+.++++|+.+.....+...+.... .++..+....+...+ +..||+.+..+ +.+.+||+...
T Consensus 242 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~----~~v~v~d~~~~ 305 (331)
T 3u4y_A 242 TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS----RELKVFTISGK 305 (331)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT----TEEEEEETTSC
T ss_pred CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCC----CcEEEEEecCC
Confidence 3458899999887755443322110 011111111123333 45676665533 35888998654
No 81
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.50 E-value=0.083 Score=56.04 Aligned_cols=183 Identities=9% Similarity=0.008 Sum_probs=102.5
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 94 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~ 94 (469)
.+++||+.+++|......... . .....-.+++.. ++.|++.. . ..+ +++||+.++++..+
T Consensus 470 Gl~~~~~~~~~~~~~~~~~~~-----------~-~~~~~i~~i~~d~~g~lWigt-~-~~G-----l~~~~~~~~~~~~~ 530 (781)
T 3v9f_A 470 GVFVIDLASKKVIHHYDTSNS-----------Q-LLENFVRSIAQDSEGRFWIGT-F-GGG-----VGIYTPDMQLVRKF 530 (781)
T ss_dssp EEEEEESSSSSCCEEECTTTS-----------S-CSCSCEEEEEECTTCCEEEEE-S-SSC-----EEEECTTCCEEEEE
T ss_pred ceEEEeCCCCeEEecccCccc-----------c-cccceeEEEEEcCCCCEEEEE-c-CCC-----EEEEeCCCCeEEEc
Confidence 688899999988877643210 0 111112222222 55666642 2 112 89999999999988
Q ss_pred ecCCCCCCCCcceEEEE-ECCEEEEEeccCCCCCccCcE-EEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEe
Q 012184 95 ETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDV-HFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG 172 (469)
Q Consensus 95 ~~~g~~p~~r~~~~~~~-~~~~lyi~GG~~~~~~~~~~v-~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~G 172 (469)
.....+|..... +++. -++.|++-.. +-+ ++||+.+.++........+|... .++++...++.|++.+
T Consensus 531 ~~~~~l~~~~i~-~i~~d~~g~lWi~T~--------~Glv~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lW~~t 600 (781)
T 3v9f_A 531 NQYEGFCSNTIN-QIYRSSKGQMWLATG--------EGLVCFPSARNFDYQVFQRKEGLPNTH-IRAISEDKNGNIWAST 600 (781)
T ss_dssp CTTTTCSCSCEE-EEEECTTSCEEEEET--------TEEEEESCTTTCCCEEECGGGTCSCCC-CCEEEECSSSCEEEEC
T ss_pred cCCCCCCCCeeE-EEEECCCCCEEEEEC--------CCceEEECCCCCcEEEccccCCCCCce-EEEEEECCCCCEEEEc
Confidence 643223322221 2222 2456776421 236 89999998887775433344332 2455555567788754
Q ss_pred cCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcce-EEEEECCEEEEEecCCCCCCcceEEEEECCC
Q 012184 173 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH-AGITIDENWYIVGGGDNNNGCQETIVLNMTK 240 (469)
Q Consensus 173 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~-~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~ 240 (469)
. +-+.+||+.+.++........++...+.. +++...+..+.|||. +-+..||+..
T Consensus 601 ~-------~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~------~Gl~~f~p~~ 656 (781)
T 3v9f_A 601 N-------TGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGSI------NGLCFFNPDI 656 (781)
T ss_dssp S-------SCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEEEET------TEEEEECSCC
T ss_pred C-------CceEEEECCCCceEEecccCCccccccccCceEECCCCEEEEECC------CceEEEChhh
Confidence 2 45899999999888765433344443332 344443444556663 2355666643
No 82
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=96.48 E-value=0.49 Score=43.05 Aligned_cols=224 Identities=12% Similarity=-0.079 Sum_probs=111.1
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 94 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~ 94 (469)
.++.||+.++ ...+... .. ..++++.. ++.||+.... ...+++||+.+++...+
T Consensus 51 ~i~~~~~~~~-~~~~~~~-----------------~~-~~~~l~~~~dg~l~v~~~~------~~~i~~~d~~~g~~~~~ 105 (296)
T 3e5z_A 51 RTWAWSDDGQ-LSPEMHP-----------------SH-HQNGHCLNKQGHLIACSHG------LRRLERQREPGGEWESI 105 (296)
T ss_dssp EEEEEETTSC-EEEEESS-----------------CS-SEEEEEECTTCCEEEEETT------TTEEEEECSTTCCEEEE
T ss_pred EEEEEECCCC-eEEEECC-----------------CC-CcceeeECCCCcEEEEecC------CCeEEEEcCCCCcEEEE
Confidence 6788888877 5444332 11 12233332 5677766421 13499999999988776
Q ss_pred ecCC-CCCCCCcceEEEEECCEEEEE----eccC------C-CCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEE
Q 012184 95 ETSG-KVPVARGGHSVTLVGSRLIIF----GGED------R-SRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAAL 162 (469)
Q Consensus 95 ~~~g-~~p~~r~~~~~~~~~~~lyi~----GG~~------~-~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~ 162 (469)
.... ..+..+....++.-++.||+. |... . .......+++|++. +....+.. ....+ ..++.
T Consensus 106 ~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~--~~~~~---~gi~~ 179 (296)
T 3e5z_A 106 ADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIR--DRVKP---NGLAF 179 (296)
T ss_dssp ECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEEC--CCSSE---EEEEE
T ss_pred eeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeec--CCCCC---ccEEE
Confidence 4210 111111122222235678875 4311 0 01113579999987 55554431 11111 23333
Q ss_pred EcCcEEEEEecCCCCcccCcEEEEECC-CCce-EeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECC
Q 012184 163 HANRYLIVFGGCSHSIFFNDLHVLDLQ-TNEW-SQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMT 239 (469)
Q Consensus 163 ~~~~~l~v~GG~~~~~~~~~i~~~d~~-~~~W-~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~ 239 (469)
..++.+++.... .+.+++|++. ++.. ...... ...... ...++.. ++++|+..+ +.+.+||+.
T Consensus 180 s~dg~~lv~~~~-----~~~i~~~~~~~~g~~~~~~~~~-~~~~~~-p~~i~~d~~G~l~v~~~-------~~v~~~~~~ 245 (296)
T 3e5z_A 180 LPSGNLLVSDTG-----DNATHRYCLNARGETEYQGVHF-TVEPGK-TDGLRVDAGGLIWASAG-------DGVHVLTPD 245 (296)
T ss_dssp CTTSCEEEEETT-----TTEEEEEEECSSSCEEEEEEEE-CCSSSC-CCSEEEBTTSCEEEEET-------TEEEEECTT
T ss_pred CCCCCEEEEeCC-----CCeEEEEEECCCCcCcCCCeEe-eCCCCC-CCeEEECCCCCEEEEcC-------CeEEEECCC
Confidence 335555544322 2578999986 4555 222211 111111 1123332 567887752 368899998
Q ss_pred CCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCCC
Q 012184 240 KLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIP 298 (469)
Q Consensus 240 ~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w~ 298 (469)
......+.. +.. | +.+++.-.....||+... ..+|+|++.+..-.
T Consensus 246 g~~~~~~~~-~~~-~------~~~~f~~~d~~~L~v~t~------~~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 246 GDELGRVLT-PQT-T------SNLCFGGPEGRTLYMTVS------TEFWSIETNVRGLE 290 (296)
T ss_dssp SCEEEEEEC-SSC-C------CEEEEESTTSCEEEEEET------TEEEEEECSCCBCC
T ss_pred CCEEEEEEC-CCC-c------eeEEEECCCCCEEEEEcC------CeEEEEEccccccc
Confidence 655444432 111 1 222222112346776542 25999999776543
No 83
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.58 Score=43.53 Aligned_cols=199 Identities=12% Similarity=0.099 Sum_probs=90.9
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETM 140 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~ 140 (469)
++..++.|+.+ ..+..||+.++.-..... .+.+ -.+++.. ++..++.++.+... ....+.+||+.+.
T Consensus 85 ~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~---~~~~--v~~~~~~~~~~~l~~~~~~~~~-~~g~i~~~d~~~~ 152 (369)
T 3zwl_B 85 FTKYCVTGSAD------YSIKLWDVSNGQCVATWK---SPVP--VKRVEFSPCGNYFLAILDNVMK-NPGSINIYEIERD 152 (369)
T ss_dssp TSSEEEEEETT------TEEEEEETTTCCEEEEEE---CSSC--EEEEEECTTSSEEEEEECCBTT-BCCEEEEEEEEEC
T ss_pred CCCEEEEEeCC------CeEEEEECCCCcEEEEee---cCCC--eEEEEEccCCCEEEEecCCccC-CCCEEEEEEecCC
Confidence 45566666643 248899998887554432 1111 1112222 34455555443111 2345777776543
Q ss_pred e----EEEeeeCC--CC--CCCCCCceEEEE-cCcEEEEEecCCCCcccCcEEEEECCC-CceEeeeecCCCCCCCcceE
Q 012184 141 T----WDAVEVTQ--TP--PAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQT-NEWSQPEIKGDLVTGRAGHA 210 (469)
Q Consensus 141 ~----W~~~~~~g--~~--p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~-~~W~~~~~~~~~p~~r~~~~ 210 (469)
. +....... .. .........+.+ .++..++.|+.+ ..+.+||+.+ ..-.... . . ....-.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~-~-~--~~~~v~~ 223 (369)
T 3zwl_B 153 SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD-----GKISKYDVSNNYEYVDSI-D-L--HEKSISD 223 (369)
T ss_dssp TTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT-----SEEEEEETTTTTEEEEEE-E-C--CSSCEEE
T ss_pred ccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC-----CEEEEEECCCCcEeEEEE-e-c--CCCceeE
Confidence 2 22111000 00 000012222223 355566666644 4689999887 3322211 1 1 1111222
Q ss_pred EEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC-------
Q 012184 211 GITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK------- 282 (469)
Q Consensus 211 ~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~------- 282 (469)
++.. ++.+++.|+.+ ..+.+||+.+......-. . ......+...+++.++++|+.++.
T Consensus 224 ~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 289 (369)
T 3zwl_B 224 MQFSPDLTYFITSSRD-----TNSFLVDVSTLQVLKKYE--T-------DCPLNTAVITPLKEFIILGGGQEAKDVTTTS 289 (369)
T ss_dssp EEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEE--C-------SSCEEEEEECSSSSEEEEEECCC--------
T ss_pred EEECCCCCEEEEecCC-----ceEEEEECCCCceeeeec--C-------CCCceeEEecCCCceEEEeecCCCceEEEEe
Confidence 3332 45566666532 368899998766443222 1 112333444454555555554331
Q ss_pred ---CCceEEEEECCCC
Q 012184 283 ---YNNEVFVMRLKPR 295 (469)
Q Consensus 283 ---~~~~~~~~d~~~~ 295 (469)
....+.+||....
T Consensus 290 ~~~~~~~i~~~d~~~~ 305 (369)
T 3zwl_B 290 ANEGKFEARFYHKIFE 305 (369)
T ss_dssp -----CEEEEEETTTC
T ss_pred cCCCcceeEEEecCCC
Confidence 1125677776544
No 84
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=96.39 E-value=0.084 Score=51.51 Aligned_cols=189 Identities=10% Similarity=0.053 Sum_probs=95.9
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE---CCEEEEEeccCCCCCccCcEEEEECC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLE 138 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~lyi~GG~~~~~~~~~~v~~~d~~ 138 (469)
++.+++.|+.++. |.++|+.+..-..+.. .......-.++.+ ++.+++-|+.+. .|.++|+.
T Consensus 131 ~~~~lasGs~dg~------i~lWd~~~~~~~~~~~---~~gH~~~V~~l~f~p~~~~~l~s~s~D~------~v~iwd~~ 195 (435)
T 4e54_B 131 HPSTVAVGSKGGD------IMLWNFGIKDKPTFIK---GIGAGGSITGLKFNPLNTNQFYASSMEG------TTRLQDFK 195 (435)
T ss_dssp CTTCEEEEETTSC------EEEECSSCCSCCEEEC---CCSSSCCCCEEEECSSCTTEEEEECSSS------CEEEEETT
T ss_pred CCCEEEEEeCCCE------EEEEECCCCCceeEEE---ccCCCCCEEEEEEeCCCCCEEEEEeCCC------EEEEeecc
Confidence 4567777775432 8888887765433321 1111112223333 345666676543 38889998
Q ss_pred CCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE---C
Q 012184 139 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI---D 215 (469)
Q Consensus 139 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~---~ 215 (469)
+.......... .......++....++.+++.|+.+ ..|.++|+.+..-..+. .....-..+.+ +
T Consensus 196 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~d-----g~i~~wd~~~~~~~~~~------~h~~~v~~v~~~p~~ 262 (435)
T 4e54_B 196 GNILRVFASSD--TINIWFCSLDVSASSRMVVTGDNV-----GNVILLNMDGKELWNLR------MHKKKVTHVALNPCC 262 (435)
T ss_dssp SCEEEEEECCS--SCSCCCCCEEEETTTTEEEEECSS-----SBEEEEESSSCBCCCSB------CCSSCEEEEEECTTC
T ss_pred CCceeEEeccC--CCCccEEEEEECCCCCEEEEEeCC-----CcEeeeccCcceeEEEe------cccceEEeeeecCCC
Confidence 88766554321 122222334444466677777754 35888898654322211 11111122222 2
Q ss_pred CEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCc--ceEEEEEcCCcEEEEEeccCCCCCceEEEEECC
Q 012184 216 ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGL--SVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK 293 (469)
Q Consensus 216 ~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~--s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~ 293 (469)
+.+++.|+.++ .+.+||+.+..-.. .+ ....+| .+..+...+++..++.|+.++ .+.+||+.
T Consensus 263 ~~~~~s~s~d~-----~v~iwd~~~~~~~~--~~-----~~~~~h~~~v~~~~~spdg~~l~s~~~D~----~i~iwd~~ 326 (435)
T 4e54_B 263 DWFLATASVDQ-----TVKIWDLRQVRGKA--SF-----LYSLPHRHPVNAACFSPDGARLLTTDQKS----EIRVYSAS 326 (435)
T ss_dssp SSEEEEEETTS-----BCCEEETTTCCSSS--CC-----SBCCBCSSCEEECCBCTTSSEEEEEESSS----CEEEEESS
T ss_pred ceEEEEecCcc-----eeeEEecccccccc--eE-----EEeeeccccccceeECCCCCeeEEEcCCC----EEEEEECC
Confidence 34677776433 35677876543111 00 011122 233333445556777777665 37777775
Q ss_pred C
Q 012184 294 P 294 (469)
Q Consensus 294 ~ 294 (469)
.
T Consensus 327 ~ 327 (435)
T 4e54_B 327 Q 327 (435)
T ss_dssp S
T ss_pred C
Confidence 4
No 85
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.37 E-value=0.63 Score=43.14 Aligned_cols=153 Identities=10% Similarity=0.048 Sum_probs=80.6
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeec-CCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMET-SGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM 140 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~-~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~ 140 (469)
++.+|+.+... ...++.||+.+++-..... .+..| .+.....-++.||+... .+.+++||+.+.
T Consensus 152 g~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~s~dg~~l~~~~~-------~~~i~~~d~~~~ 216 (353)
T 3vgz_A 152 TNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQNTGKMS---TGLALDSEGKRLYTTNA-------DGELITIDTADN 216 (353)
T ss_dssp TTEEEEEEESS-----SCEEEEEETTTTEEEEEECCCCTTC---CCCEEETTTTEEEEECT-------TSEEEEEETTTT
T ss_pred CCEEEEEecCC-----CceEEEEcCCCCceEEEecCCCCcc---ceEEECCCCCEEEEEcC-------CCeEEEEECCCC
Confidence 56677775322 2349999999887544432 22111 11111112345666532 346889999988
Q ss_pred eEEEeeeCCCCCCCCCCceEEEEc-CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCE
Q 012184 141 TWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DEN 217 (469)
Q Consensus 141 ~W~~~~~~g~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~ 217 (469)
+-......+..........++... ++.+|+.... .+.+++||+.+.+....... +.+ ..++.. ++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~---~~~---~~~~~s~dg~~ 285 (353)
T 3vgz_A 217 KILSRKKLLDDGKEHFFINISLDTARQRAFITDSK-----AAEVLVVDTRNGNILAKVAA---PES---LAVLFNPARNE 285 (353)
T ss_dssp EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS-----SSEEEEEETTTCCEEEEEEC---SSC---CCEEEETTTTE
T ss_pred eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC-----CCEEEEEECCCCcEEEEEEc---CCC---ceEEECCCCCE
Confidence 755433222211111122233333 4557665432 26799999988775443211 222 123332 345
Q ss_pred EEEEecCCCCCCcceEEEEECCCCcEEE
Q 012184 218 WYIVGGGDNNNGCQETIVLNMTKLAWSI 245 (469)
Q Consensus 218 l~v~GG~~~~~~~~d~~~~d~~~~~W~~ 245 (469)
+|+.+.. .+.+.+||+.+.....
T Consensus 286 l~v~~~~-----~~~v~~~d~~~~~~~~ 308 (353)
T 3vgz_A 286 AYVTHRQ-----AGKVSVIDAKSYKVVK 308 (353)
T ss_dssp EEEEETT-----TTEEEEEETTTTEEEE
T ss_pred EEEEECC-----CCeEEEEECCCCeEEE
Confidence 7776542 2478999998876544
No 86
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=96.36 E-value=0.38 Score=42.91 Aligned_cols=191 Identities=10% Similarity=0.000 Sum_probs=97.3
Q ss_pred eeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEE
Q 012184 57 CMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHF 134 (469)
Q Consensus 57 ~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~ 134 (469)
+++.. ++.||+... . ..+++||+.+.....+... ....-++++.- +++||+.... .+.+++
T Consensus 71 ~i~~~~~g~l~v~~~--~-----~~i~~~d~~~~~~~~~~~~----~~~~p~~i~~~~~g~l~v~~~~------~~~i~~ 133 (270)
T 1rwi_B 71 GLAVDGAGTVYVTDF--N-----NRVVTLAAGSNNQTVLPFD----GLNYPEGLAVDTQGAVYVADRG------NNRVVK 133 (270)
T ss_dssp CEEECTTCCEEEEET--T-----TEEEEECTTCSCCEECCCC----SCSSEEEEEECTTCCEEEEEGG------GTEEEE
T ss_pred eeEECCCCCEEEEcC--C-----CEEEEEeCCCceEeeeecC----CcCCCcceEECCCCCEEEEECC------CCEEEE
Confidence 34433 567887754 1 2489999887765444311 11112233333 4678876432 345888
Q ss_pred EECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE
Q 012184 135 LDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI 214 (469)
Q Consensus 135 ~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~ 214 (469)
|+..+........ ... ..-..++...++.+|+.... .+.+++||+.+..-..... ... .....++..
T Consensus 134 ~~~~~~~~~~~~~-~~~---~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~~~~~~~~~~-~~~---~~p~~i~~d 200 (270)
T 1rwi_B 134 LAAGSKTQTVLPF-TGL---NDPDGVAVDNSGNVYVTDTD-----NNRVVKLEAESNNQVVLPF-TDI---TAPWGIAVD 200 (270)
T ss_dssp ECTTCCSCEECCC-CSC---CSCCCEEECTTCCEEEEEGG-----GTEEEEECTTTCCEEECCC-SSC---CSEEEEEEC
T ss_pred EECCCceeEeecc-ccC---CCceeEEEeCCCCEEEEECC-----CCEEEEEecCCCceEeecc-cCC---CCceEEEEC
Confidence 8876655433221 111 12234444445678886542 2568999987765433211 111 222233433
Q ss_pred -CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECC
Q 012184 215 -DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK 293 (469)
Q Consensus 215 -~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~ 293 (469)
++.+|+.... .+.+.+||+....-..... .. ......+.+++++.||+....+ +.+.+|++.
T Consensus 201 ~~g~l~v~~~~-----~~~v~~~~~~~~~~~~~~~-~~-------~~~p~~i~~~~~g~l~v~~~~~----~~v~~~~~~ 263 (270)
T 1rwi_B 201 EAGTVYVTEHN-----TNQVVKLLAGSTTSTVLPF-TG-------LNTPLAVAVDSDRTVYVADRGN----DRVVKLTSL 263 (270)
T ss_dssp TTCCEEEEETT-----TSCEEEECTTCSCCEECCC-CS-------CSCEEEEEECTTCCEEEEEGGG----TEEEEECCC
T ss_pred CCCCEEEEECC-----CCcEEEEcCCCCcceeecc-CC-------CCCceeEEECCCCCEEEEECCC----CEEEEEcCC
Confidence 3478877542 2358899987654332211 00 0122334455555788776543 357777764
Q ss_pred C
Q 012184 294 P 294 (469)
Q Consensus 294 ~ 294 (469)
.
T Consensus 264 ~ 264 (270)
T 1rwi_B 264 E 264 (270)
T ss_dssp G
T ss_pred C
Confidence 3
No 87
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=96.36 E-value=0.69 Score=43.46 Aligned_cols=186 Identities=12% Similarity=0.074 Sum_probs=91.8
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--C-CEEEEEeccCCCCCccCcEEEEECC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--G-SRLIIFGGEDRSRKLLNDVHFLDLE 138 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~-~~lyi~GG~~~~~~~~~~v~~~d~~ 138 (469)
++..++.|+.+. .+..+|+.++.-...- .... ..-.++.+ + ..+++-|+.+. .|.+||+.
T Consensus 138 dg~~l~sgs~d~------~i~iwd~~~~~~~~~~---~~h~--~~V~~~~~~~~~~~~l~s~s~D~------~v~iwd~~ 200 (344)
T 4gqb_B 138 SGTQAVSGSKDI------CIKVWDLAQQVVLSSY---RAHA--AQVTCVAASPHKDSVFLSCSEDN------RILLWDTR 200 (344)
T ss_dssp TSSEEEEEETTS------CEEEEETTTTEEEEEE---CCCS--SCEEEEEECSSCTTEEEEEETTS------CEEEEETT
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEE---cCcC--CceEEEEecCCCCCceeeecccc------cccccccc
Confidence 566777776543 2889999888643322 1111 11222233 2 34777776543 38889998
Q ss_pred CCeEEEeeeCCCCCCCCCCceEEEE--cCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-C
Q 012184 139 TMTWDAVEVTQTPPAPRYDHSAALH--ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-D 215 (469)
Q Consensus 139 t~~W~~~~~~g~~p~~r~~~~~~~~--~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~ 215 (469)
+.+-...- ...........+.+ .++.+++.|+.+ ..|.+||+.+.+-...- .+ ....-.+++.. +
T Consensus 201 ~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~l~sg~~d-----g~v~~wd~~~~~~~~~~-~~---h~~~v~~v~fsp~ 268 (344)
T 4gqb_B 201 CPKPASQI---GCSAPGYLPTSLAWHPQQSEVFVFGDEN-----GTVSLVDTKSTSCVLSS-AV---HSQCVTGLVFSPH 268 (344)
T ss_dssp SSSCEEEC---C----CCCEEEEEECSSCTTEEEEEETT-----SEEEEEESCC--CCEEE-EC---CSSCEEEEEECSS
T ss_pred ccceeeee---ecceeeccceeeeecCCCCcceEEeccC-----CcEEEEECCCCcEEEEE-cC---CCCCEEEEEEccC
Confidence 77643321 11111111122222 245577777654 35888998765422110 01 11111222322 2
Q ss_pred -CEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECC
Q 012184 216 -ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLK 293 (469)
Q Consensus 216 -~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~ 293 (469)
..+++.|+.++ .+.+||+.+..-..+ .+.. ..+..+...+ +..+++.||.++. +.++++.
T Consensus 269 g~~~lasgs~D~-----~i~vwd~~~~~~~~~---~~H~------~~V~~v~~sp~~~~llas~s~D~~----v~~w~v~ 330 (344)
T 4gqb_B 269 SVPFLASLSEDC-----SLAVLDSSLSELFRS---QAHR------DFVRDATWSPLNHSLLTTVGWDHQ----VVHHVVP 330 (344)
T ss_dssp SSCCEEEEETTS-----CEEEECTTCCEEEEE---CCCS------SCEEEEEECSSSTTEEEEEETTSC----EEEEECC
T ss_pred CCeEEEEEeCCC-----eEEEEECCCCcEEEE---cCCC------CCEEEEEEeCCCCeEEEEEcCCCe----EEEEECC
Confidence 35666666432 477889887754332 1111 1233333344 3467878887764 6666664
Q ss_pred C
Q 012184 294 P 294 (469)
Q Consensus 294 ~ 294 (469)
+
T Consensus 331 ~ 331 (344)
T 4gqb_B 331 T 331 (344)
T ss_dssp C
T ss_pred C
Confidence 3
No 88
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=96.34 E-value=0.8 Score=47.75 Aligned_cols=208 Identities=13% Similarity=0.075 Sum_probs=102.3
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCC----------CCcc
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRS----------RKLL 129 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~----------~~~~ 129 (469)
+++.++|+....+. ....++++|+.++........+ .. ...+.+ +++.++++..... ....
T Consensus 135 Dg~~la~~~~~~G~-~~~~i~v~d~~tg~~~~~~~~~----~~--~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (710)
T 2xdw_A 135 DGEYFAYGLSASGS-DWVTIKFMKVDGAKELPDVLER----VK--FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLH 207 (710)
T ss_dssp TSSEEEEEEEETTC-SCEEEEEEETTTTEEEEEEEEE----EC--SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCC
T ss_pred CCCEEEEEEcCCCC-ceEEEEEEECCCCCCCcccccC----cc--cceEEEEeCCCEEEEEEECCccccccccccccCCC
Confidence 55555554332221 2236999999999987654211 11 122233 4443444433221 0234
Q ss_pred CcEEEEECCCCeEE--EeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCC------C--ceEeeeec
Q 012184 130 NDVHFLDLETMTWD--AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT------N--EWSQPEIK 199 (469)
Q Consensus 130 ~~v~~~d~~t~~W~--~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~------~--~W~~~~~~ 199 (469)
..++++++.+.... .+. . ....+........-.|++.+++.........++++++|+.+ . .+..+...
T Consensus 208 ~~v~~~~l~t~~~~~~~v~-~-~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~ 285 (710)
T 2xdw_A 208 QKLYYHVLGTDQSEDILCA-E-FPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN 285 (710)
T ss_dssp CEEEEEETTSCGGGCEEEE-C-CTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred CEEEEEECCCCcccceEEe-c-cCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC
Confidence 56999999887632 221 1 11112222333333355444444332222257899999876 4 57766421
Q ss_pred CCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCC---cEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEE
Q 012184 200 GDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL---AWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAF 276 (469)
Q Consensus 200 ~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~---~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~ 276 (469)
...........++.+|+.+..+ .....++++|+.+. .|..+..... ...+..+...+++++++.
T Consensus 286 ----~~~~~~~~s~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~~lv~~ 352 (710)
T 2xdw_A 286 ----FEGEYDYVTNEGTVFTFKTNRH--SPNYRLINIDFTDPEESKWKVLVPEHE-------KDVLEWVACVRSNFLVLC 352 (710)
T ss_dssp ----SSSCEEEEEEETTEEEEEECTT--CTTCEEEEEETTSCCGGGCEEEECCCS-------SCEEEEEEEETTTEEEEE
T ss_pred ----CCcEEEEEeccCCEEEEEECCC--CCCCEEEEEeCCCCCcccceeccCCCC-------CCeEEEEEEEcCCEEEEE
Confidence 1111122333467788776532 22457999999775 5877643211 011222222234566666
Q ss_pred eccCCCCCceEEEEECC
Q 012184 277 GGYNGKYNNEVFVMRLK 293 (469)
Q Consensus 277 GG~~~~~~~~~~~~d~~ 293 (469)
...++ ...++++++.
T Consensus 353 ~~~~g--~~~l~~~~~~ 367 (710)
T 2xdw_A 353 YLHDV--KNTLQLHDLA 367 (710)
T ss_dssp EEETT--EEEEEEEETT
T ss_pred EEECC--EEEEEEEECC
Confidence 55443 3456777763
No 89
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=96.32 E-value=0.19 Score=50.81 Aligned_cols=193 Identities=16% Similarity=0.137 Sum_probs=94.6
Q ss_pred eEEEEECCCCeEEEeecC-CC-------CCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCC
Q 012184 80 IVRFIDLETNLCGVMETS-GK-------VPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQT 150 (469)
Q Consensus 80 ~~~~~d~~t~~W~~~~~~-g~-------~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~ 150 (469)
.+.++|..+.+-...-.. +. .|.++....+..- +..+|+-. . ..+.++++|..+..-..+...
T Consensus 249 ~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~-~-----~~g~i~vvd~~~~~~l~~~~i-- 320 (543)
T 1nir_A 249 QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV-K-----ETGKVLLVNYKDIDNLTVTSI-- 320 (543)
T ss_dssp EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE-T-----TTTEEEEEECTTSSSCEEEEE--
T ss_pred eEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE-C-----CCCeEEEEEecCCCcceeEEe--
Confidence 488889988775443221 11 0122322222222 33444433 2 245699999877432111111
Q ss_pred CCCCCCCceEEEEcCc-EEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCC
Q 012184 151 PPAPRYDHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNN 227 (469)
Q Consensus 151 ~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~ 227 (469)
+..+.-+.+....++ ++|+.+.. .+.|.++|+.+++-...-..+..|.+..+... .. ++.+|+.+...
T Consensus 321 -~~~~~~~~~~~spdg~~l~va~~~-----~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~-- 391 (543)
T 1nir_A 321 -GAAPFLHDGGWDSSHRYFMTAANN-----SNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLG-- 391 (543)
T ss_dssp -ECCSSCCCEEECTTSCEEEEEEGG-----GTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSS--
T ss_pred -ccCcCccCceECCCCCEEEEEecC-----CCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCC--
Confidence 112223344443344 45554322 36788999998875543323444444333222 23 25677765421
Q ss_pred CCcceEEEEECCCC-----cEEEeccCCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCC--CCceEEEEECCCCCC
Q 012184 228 NGCQETIVLNMTKL-----AWSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGK--YNNEVFVMRLKPRDI 297 (469)
Q Consensus 228 ~~~~d~~~~d~~~~-----~W~~~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~--~~~~~~~~d~~~~~w 297 (469)
.+.+-++|+.+. .|+.+..++.... + .+ .+...+ ..+||+-.-.+.. ....+.+||+.+..-
T Consensus 392 --d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~----~-~~-~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~ 461 (543)
T 1nir_A 392 --DGSISLIGTDPKNHPQYAWKKVAELQGQGG----G-SL-FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA 461 (543)
T ss_dssp --SSEEEEEECCTTTCTTTBTSEEEEEECSCS----C-CC-CEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred --CceEEEEEeCCCCCchhcCeEEEEEEcCCC----C-ce-EEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCC
Confidence 235778887662 3777666543321 1 11 122334 4566653311111 245799999987653
No 90
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=96.31 E-value=0.7 Score=48.02 Aligned_cols=195 Identities=11% Similarity=0.063 Sum_probs=92.6
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEEC--C--EEEEEeccCCCCCccCcEEEEEC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG--S--RLIIFGGEDRSRKLLNDVHFLDL 137 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~--~--~lyi~GG~~~~~~~~~~v~~~d~ 137 (469)
++..++.|+.+. .+.++|.....-..+... ....+....++.+. + .+++.|+.+. .|.+||+
T Consensus 483 ~~~~l~s~s~D~------~i~iwd~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d~------~v~vwd~ 548 (694)
T 3dm0_A 483 DNRQIVSASRDR------TIKLWNTLGECKYTISEG--GEGHRDWVSCVRFSPNTLQPTIVSASWDK------TVKVWNL 548 (694)
T ss_dssp TSSCEEEEETTS------CEEEECTTSCEEEEECSS--TTSCSSCEEEEEECSCSSSCEEEEEETTS------CEEEEET
T ss_pred CCCEEEEEeCCC------EEEEEECCCCcceeeccC--CCCCCCcEEEEEEeCCCCcceEEEEeCCC------eEEEEEC
Confidence 455666666432 277777765432233211 11122223334442 1 3555565432 4889999
Q ss_pred CCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCE
Q 012184 138 ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN 217 (469)
Q Consensus 138 ~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~ 217 (469)
.+......- .+ ....-.+++...++.+++.|+.+ ..|.++|+.+.+-.. .......-++++...+.
T Consensus 549 ~~~~~~~~~-~~---h~~~v~~v~~spdg~~l~sg~~D-----g~i~iwd~~~~~~~~-----~~~~~~~v~~~~~sp~~ 614 (694)
T 3dm0_A 549 SNCKLRSTL-AG---HTGYVSTVAVSPDGSLCASGGKD-----GVVLLWDLAEGKKLY-----SLEANSVIHALCFSPNR 614 (694)
T ss_dssp TTCCEEEEE-CC---CSSCEEEEEECTTSSEEEEEETT-----SBCEEEETTTTEEEE-----CCBCSSCEEEEEECSSS
T ss_pred CCCcEEEEE-cC---CCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCceEE-----EecCCCcEEEEEEcCCC
Confidence 877654322 11 11111223333466677777755 357889988765322 11122223344444444
Q ss_pred EEEEecCCCCCCcceEEEEECCCCcEEEeccCCC-----------CCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCce
Q 012184 218 WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKG-----------RNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNE 286 (469)
Q Consensus 218 l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~-----------~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~ 286 (469)
.+++++.+ ..+.+||+.+..-...-.... +....+....+..+...+++.+++.|+.++ .
T Consensus 615 ~~l~~~~~-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg----~ 685 (694)
T 3dm0_A 615 YWLCAATE-----HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG----V 685 (694)
T ss_dssp SEEEEEET-----TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS----E
T ss_pred cEEEEEcC-----CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC----e
Confidence 44444432 247888988765432111000 000011111233344555667778888766 3
Q ss_pred EEEEECC
Q 012184 287 VFVMRLK 293 (469)
Q Consensus 287 ~~~~d~~ 293 (469)
+.++++.
T Consensus 686 i~iW~i~ 692 (694)
T 3dm0_A 686 IRVWGIG 692 (694)
T ss_dssp EEEEEC-
T ss_pred EEEEecc
Confidence 6667653
No 91
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.31 E-value=0.71 Score=43.06 Aligned_cols=166 Identities=14% Similarity=0.105 Sum_probs=84.5
Q ss_pred EEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCc
Q 012184 81 VRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH 158 (469)
Q Consensus 81 ~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~ 158 (469)
+..||+.++.-...- ..... ...++.+ ++.+++.|+.+. .+.+||+.+..-...- .+ ....-.
T Consensus 166 i~~wd~~~~~~~~~~---~~h~~--~v~~~~~~~~~~~l~sg~~d~------~v~~wd~~~~~~~~~~-~~---h~~~v~ 230 (340)
T 1got_B 166 CALWDIETGQQTTTF---TGHTG--DVMSLSLAPDTRLFVSGACDA------SAKLWDVREGMCRQTF-TG---HESDIN 230 (340)
T ss_dssp EEEEETTTTEEEEEE---CCCSS--CEEEEEECTTSSEEEEEETTS------CEEEEETTTCSEEEEE-CC---CSSCEE
T ss_pred EEEEECCCCcEEEEE---cCCCC--ceEEEEECCCCCEEEEEeCCC------cEEEEECCCCeeEEEE-cC---CcCCEE
Confidence 889999888654332 11111 1222223 456777776543 4888998877643321 11 111112
Q ss_pred eEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEE
Q 012184 159 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVL 236 (469)
Q Consensus 159 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~ 236 (469)
+++...++.+++.|+.+ ..+.+||+.+..-.... ..+........+.+ ++.+++.|+.+ ..+.+|
T Consensus 231 ~v~~~p~~~~l~s~s~d-----~~v~iwd~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~~g~~d-----~~i~vw 297 (340)
T 1got_B 231 AICFFPNGNAFATGSDD-----ATCRLFDLRADQELMTY---SHDNIICGITSVSFSKSGRLLLAGYDD-----FNCNVW 297 (340)
T ss_dssp EEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEE---CCTTCCSCEEEEEECTTSSEEEEEETT-----SEEEEE
T ss_pred EEEEcCCCCEEEEEcCC-----CcEEEEECCCCcEEEEE---ccCCcccceEEEEECCCCCEEEEECCC-----CeEEEE
Confidence 33333356677777755 35889998776533211 11111122222223 45677777643 357888
Q ss_pred ECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC
Q 012184 237 NMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK 282 (469)
Q Consensus 237 d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~ 282 (469)
|+.+..-. ..+.+.. ..+..+...+++.+++.||.++.
T Consensus 298 d~~~~~~~--~~~~~h~------~~v~~~~~s~dg~~l~s~s~D~~ 335 (340)
T 1got_B 298 DALKADRA--GVLAGHD------NRVSCLGVTDDGMAVATGSWDSF 335 (340)
T ss_dssp ETTTCCEE--EEEECCS------SCEEEEEECTTSSCEEEEETTSC
T ss_pred EcccCcEe--eEeecCC------CcEEEEEEcCCCCEEEEEcCCcc
Confidence 88665422 2222211 12333344456677788887653
No 92
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=96.30 E-value=0.094 Score=47.23 Aligned_cols=192 Identities=6% Similarity=-0.030 Sum_probs=93.5
Q ss_pred ceEEEEccC-CceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184 16 VVMVFDLRS-LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 94 (469)
Q Consensus 16 ~~~~~d~~~-~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~ 94 (469)
.++.+|+.+ +....+.... ........+..-++..+++++.... ....+|.+|..+..-..+
T Consensus 63 ~i~~~d~~~~~~~~~~~~~~---------------~~~~~~~~~~spdg~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~ 125 (297)
T 2ojh_A 63 LLYRLSLAGDPSPEKVDTGF---------------ATICNNDHGISPDGALYAISDKVEF--GKSAIYLLPSTGGTPRLM 125 (297)
T ss_dssp EEEEEESSSCCSCEECCCTT---------------CCCBCSCCEECTTSSEEEEEECTTT--SSCEEEEEETTCCCCEEC
T ss_pred eEEEEeCCCCCCceEecccc---------------ccccccceEECCCCCEEEEEEeCCC--CcceEEEEECCCCceEEe
Confidence 678888887 6655444321 1111122222225555555543322 234599999888775555
Q ss_pred ecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcE-EEEE
Q 012184 95 ETSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRY-LIVF 171 (469)
Q Consensus 95 ~~~g~~p~~r~~~~~~~~-~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~-l~v~ 171 (469)
... . . ...++.. ++ .|++.++.+. ...+|.+++.+.....+.. . +.....+....++. |++.
T Consensus 126 ~~~---~-~--~~~~~~spdg~~l~~~~~~~~----~~~l~~~~~~~~~~~~~~~---~--~~~~~~~~~s~dg~~l~~~ 190 (297)
T 2ojh_A 126 TKN---L-P--SYWHGWSPDGKSFTYCGIRDQ----VFDIYSMDIDSGVETRLTH---G--EGRNDGPDYSPDGRWIYFN 190 (297)
T ss_dssp CSS---S-S--EEEEEECTTSSEEEEEEEETT----EEEEEEEETTTCCEEECCC---S--SSCEEEEEECTTSSEEEEE
T ss_pred ecC---C-C--ccceEECCCCCEEEEEECCCC----ceEEEEEECCCCcceEccc---C--CCccccceECCCCCEEEEE
Confidence 421 1 1 2222222 33 4555554332 2357888888777655431 1 11112222223444 4444
Q ss_pred ecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCC------CcceEEEEECCCCcEE
Q 012184 172 GGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNN------GCQETIVLNMTKLAWS 244 (469)
Q Consensus 172 GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~------~~~d~~~~d~~~~~W~ 244 (469)
+..+. ...+|.+++.+.....+. . .......++.. ++..+++++.+... ....++++|+.+....
T Consensus 191 ~~~~~---~~~i~~~~~~~~~~~~~~---~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 262 (297)
T 2ojh_A 191 SSRTG---QMQIWRVRVDGSSVERIT---D--SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE 262 (297)
T ss_dssp ECTTS---SCEEEEEETTSSCEEECC---C--CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE
T ss_pred ecCCC---CccEEEECCCCCCcEEEe---c--CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCce
Confidence 33232 356888887776665543 1 11111122222 44555555433221 1356999999887766
Q ss_pred Eec
Q 012184 245 ILT 247 (469)
Q Consensus 245 ~~~ 247 (469)
.+.
T Consensus 263 ~~~ 265 (297)
T 2ojh_A 263 TLF 265 (297)
T ss_dssp EEE
T ss_pred eee
Confidence 554
No 93
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=96.29 E-value=0.63 Score=42.86 Aligned_cols=184 Identities=13% Similarity=0.044 Sum_probs=81.9
Q ss_pred eEEEEECC--CCeEEEeecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCccCcEEEEECCCCe-EEEeeeCCCCCCC
Q 012184 80 IVRFIDLE--TNLCGVMETSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLETMT-WDAVEVTQTPPAP 154 (469)
Q Consensus 80 ~~~~~d~~--t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~-W~~~~~~g~~p~~ 154 (469)
.+..|++. ++.+..+... +....-..++.. ++ .||+.+. . .+.+.+||+.... ...+..... .
T Consensus 61 ~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~-~-----~~~i~~~d~~~~~~~~~~~~~~~---~ 128 (343)
T 1ri6_A 61 RVLAYRIAPDDGALTFAAES---ALPGSLTHISTDHQGQFVFVGSY-N-----AGNVSVTRLEDGLPVGVVDVVEG---L 128 (343)
T ss_dssp EEEEEEECTTTCCEEEEEEE---ECSSCCSEEEECTTSSEEEEEET-T-----TTEEEEEEEETTEEEEEEEEECC---C
T ss_pred eEEEEEecCCCCceeecccc---ccCCCCcEEEEcCCCCEEEEEec-C-----CCeEEEEECCCCccccccccccC---C
Confidence 36666665 7788766522 111111222222 33 4655543 2 2348888874322 222221111 1
Q ss_pred CCCceEEEEcC-cEEEEEecCCCCcccCcEEEEECCC-CceEeee--ecCCCCCCCcceEEEEE-CC-EEEEEecCCCCC
Q 012184 155 RYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQT-NEWSQPE--IKGDLVTGRAGHAGITI-DE-NWYIVGGGDNNN 228 (469)
Q Consensus 155 r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~-~~W~~~~--~~~~~p~~r~~~~~~~~-~~-~l~v~GG~~~~~ 228 (469)
...+.++...+ +.+|+.+..+ +.+++||+.+ .+...+. .. ..+.......++.. ++ .+|+.+..
T Consensus 129 ~~~~~~~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~pdg~~l~~~~~~---- 198 (343)
T 1ri6_A 129 DGCHSANISPDNRTLWVPALKQ-----DRICLFTVSDDGHLVAQDPAEV-TTVEGAGPRHMVFHPNEQYAYCVNEL---- 198 (343)
T ss_dssp TTBCCCEECTTSSEEEEEEGGG-----TEEEEEEECTTSCEEEEEEEEE-ECSTTCCEEEEEECTTSSEEEEEETT----
T ss_pred CCceEEEECCCCCEEEEecCCC-----CEEEEEEecCCCceeeeccccc-ccCCCCCcceEEECCCCCEEEEEeCC----
Confidence 11233333334 4566654222 4689999887 6665332 11 11111111123332 33 46666532
Q ss_pred CcceEEEEECC--CCcEEEe---ccCCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECC
Q 012184 229 GCQETIVLNMT--KLAWSIL---TSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLK 293 (469)
Q Consensus 229 ~~~d~~~~d~~--~~~W~~~---~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~ 293 (469)
.+.+.+||+. +..+..+ ...+.... .......+...+ +..||+.+..+ +.+.+||+.
T Consensus 199 -~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~i~~s~dg~~l~v~~~~~----~~i~v~d~~ 261 (343)
T 1ri6_A 199 -NSSVDVWELKDPHGNIECVQTLDMMPENFS---DTRWAADIHITPDGRHLYACDRTA----SLITVFSVS 261 (343)
T ss_dssp -TTEEEEEESSCTTSCCEEEEEEECSCTTCC---SCCCEEEEEECTTSSEEEEEETTT----TEEEEEEEC
T ss_pred -CCEEEEEEecCCCCcEEEEeeccccCcccc---ccCCccceEECCCCCEEEEEecCC----CEEEEEEEc
Confidence 2367888884 4444332 22221110 011222334444 34677665432 357778776
No 94
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.29 E-value=0.088 Score=44.27 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184 391 LSKELSSVQGQLVAERSRCFKLEAQIAELQKM 422 (469)
Q Consensus 391 ~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~ 422 (469)
++.+|.+.+.++..++.++..+..++.+...+
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K 78 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEK 78 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555544444
No 95
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=96.27 E-value=0.61 Score=42.03 Aligned_cols=215 Identities=8% Similarity=-0.037 Sum_probs=112.6
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 94 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~ 94 (469)
.+..||+. +.+....... ....-++++.. ++.||+.... ...+++||+. +....+
T Consensus 37 ~v~~~d~~-~~~~~~~~~~----------------~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~ 92 (299)
T 2z2n_A 37 MISCINLD-GKITEYPLPT----------------PDAKVMCLTISSDGEVWFTENA------ANKIGRITKK-GIIKEY 92 (299)
T ss_dssp EEEEECTT-CCEEEEECSS----------------TTCCEEEEEECTTSCEEEEETT------TTEEEEECTT-SCEEEE
T ss_pred cEEEEcCC-CCeEEecCCc----------------ccCceeeEEECCCCCEEEeCCC------CCeEEEECCC-CcEEEE
Confidence 57888887 7766554321 11222333332 5678776432 1248999986 556555
Q ss_pred ecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEec
Q 012184 95 ETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG 173 (469)
Q Consensus 95 ~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG 173 (469)
... .....-++++.. ++.||+.... .+.+++||+ ++......... ....-+.++...++.+|+...
T Consensus 93 ~~~---~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~ 159 (299)
T 2z2n_A 93 TLP---NPDSAPYGITEGPNGDIWFTEMN------GNRIGRITD-DGKIREYELPN---KGSYPSFITLGSDNALWFTEN 159 (299)
T ss_dssp ECS---STTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEECSS---TTCCEEEEEECTTSCEEEEET
T ss_pred eCC---CcCCCceeeEECCCCCEEEEecC------CceEEEECC-CCCEEEecCCC---CCCCCceEEEcCCCCEEEEeC
Confidence 421 111122333333 4678876432 345899998 66665543211 112223444444667887542
Q ss_pred CCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCC
Q 012184 174 CSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGR 252 (469)
Q Consensus 174 ~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~ 252 (469)
. .+.+++||+ +++...+.... .......++.. ++.+|+.... .+.+.+||+ +.....+.. +..
T Consensus 160 ~-----~~~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~-~~~ 223 (299)
T 2z2n_A 160 Q-----NNAIGRITE-SGDITEFKIPT---PASGPVGITKGNDDALWFVEII-----GNKIGRITT-SGEITEFKI-PTP 223 (299)
T ss_dssp T-----TTEEEEECT-TCCEEEEECSS---TTCCEEEEEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEEC-SST
T ss_pred C-----CCEEEEEcC-CCcEEEeeCCC---CCCcceeEEECCCCCEEEEccC-----CceEEEECC-CCcEEEEEC-CCC
Confidence 1 256899999 77766542111 11122233333 4577776432 246889999 666655421 111
Q ss_pred CCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECC
Q 012184 253 NPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK 293 (469)
Q Consensus 253 ~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~ 293 (469)
......+..++++.||+.... .+.+++||++
T Consensus 224 ------~~~~~~i~~~~~g~l~v~~~~----~~~i~~~d~~ 254 (299)
T 2z2n_A 224 ------NARPHAITAGAGIDLWFTEWG----ANKIGRLTSN 254 (299)
T ss_dssp ------TCCEEEEEECSTTCEEEEETT----TTEEEEEETT
T ss_pred ------CCCceeEEECCCCCEEEeccC----CceEEEECCC
Confidence 112334445555677776422 2358888873
No 96
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.27 E-value=0.013 Score=60.18 Aligned_cols=11 Identities=18% Similarity=0.157 Sum_probs=5.0
Q ss_pred EEEEECCCCCC
Q 012184 287 VFVMRLKPRDI 297 (469)
Q Consensus 287 ~~~~d~~~~~w 297 (469)
+-.+++..+.|
T Consensus 347 L~~L~l~~N~~ 357 (597)
T 3oja_B 347 LKNLTLSHNDW 357 (597)
T ss_dssp CSEEECCSSCE
T ss_pred CCEEEeeCCCC
Confidence 33445544444
No 97
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=96.23 E-value=0.26 Score=46.81 Aligned_cols=194 Identities=10% Similarity=0.055 Sum_probs=89.2
Q ss_pred CEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--C-CEEEEEeccCCCCCccCcEEEEECCC
Q 012184 63 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--G-SRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 63 ~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~-~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
+.+++.|+.++ .+..||+.+..-...- ........++.+ + ..+++.|+.++ .+.+||+.+
T Consensus 156 ~~~~~~~~~~~------~v~~~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~ll~~~~~dg------~i~i~d~~~ 218 (408)
T 4a11_B 156 HCLVAVGTRGP------KVQLCDLKSGSCSHIL-----QGHRQEILAVSWSPRYDYILATASADS------RVKLWDVRR 218 (408)
T ss_dssp CCEEEEEESSS------SEEEEESSSSCCCEEE-----CCCCSCEEEEEECSSCTTEEEEEETTS------CEEEEETTC
T ss_pred CcEEEEEcCCC------eEEEEeCCCcceeeee-----cCCCCcEEEEEECCCCCcEEEEEcCCC------cEEEEECCC
Confidence 34666665432 2888998776532222 111112223333 2 23677776543 388888866
Q ss_pred Ce--EEEeeeC-C----CC----CCCCCC-ceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCc
Q 012184 140 MT--WDAVEVT-Q----TP----PAPRYD-HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRA 207 (469)
Q Consensus 140 ~~--W~~~~~~-g----~~----p~~r~~-~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~ 207 (469)
.. ...+... + .. ...... .++....++..++.|+.+ +.+.+||+.+..-..............
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~ 293 (408)
T 4a11_B 219 ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD-----NRMRLWNSSNGENTLVNYGKVCNNSKK 293 (408)
T ss_dssp SSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCBCCCCCCCCCCCCSS
T ss_pred CCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCC-----CeEEEEECCCCccceeccccccccccc
Confidence 43 1111100 0 00 011111 122233355566666654 358899988765432211111111111
Q ss_pred --ceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCc
Q 012184 208 --GHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNN 285 (469)
Q Consensus 208 --~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~ 285 (469)
........+..+++++.+ ..+.+||+.+..-.. .+.+.. ..+..+...+++.+++.|+.++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~-----~~i~v~d~~~~~~~~--~~~~~~------~~v~~~~~s~~~~~l~s~~~dg---- 356 (408)
T 4a11_B 294 GLKFTVSCGCSSEFVFVPYG-----STIAVYTVYSGEQIT--MLKGHY------KTVDCCVFQSNFQELYSGSRDC---- 356 (408)
T ss_dssp CCCCEECCSSSSCEEEEEET-----TEEEEEETTTCCEEE--EECCCS------SCEEEEEEETTTTEEEEEETTS----
T ss_pred cceeEEecCCCceEEEEecC-----CEEEEEECcCCccee--eeccCC------CeEEEEEEcCCCCEEEEECCCC----
Confidence 111111123334444322 368899987765332 222111 1223334445556777787665
Q ss_pred eEEEEECCCC
Q 012184 286 EVFVMRLKPR 295 (469)
Q Consensus 286 ~~~~~d~~~~ 295 (469)
.+.+||+.+.
T Consensus 357 ~i~iw~~~~~ 366 (408)
T 4a11_B 357 NILAWVPSLY 366 (408)
T ss_dssp CEEEEEECC-
T ss_pred eEEEEeCCCC
Confidence 3777777654
No 98
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=96.21 E-value=0.74 Score=42.85 Aligned_cols=196 Identities=13% Similarity=0.088 Sum_probs=89.5
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECC-CCeEEE
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLE-TNLCGV 93 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~-t~~W~~ 93 (469)
.+++||+.++++..+..... ......+.+..- +..||+.+. . ...+..||+. ++....
T Consensus 64 ~v~~~~~~~g~~~~~~~~~~--------------~~~~p~~~a~spdg~~l~~~~~-~-----~~~v~v~~~~~~g~~~~ 123 (347)
T 3hfq_A 64 GIAAWQIDGQTAHKLNTVVA--------------PGTPPAYVAVDEARQLVYSANY-H-----KGTAEVMKIAADGALTL 123 (347)
T ss_dssp EEEEEEEETTEEEEEEEEEE--------------ESCCCSEEEEETTTTEEEEEET-T-----TTEEEEEEECTTSCEEE
T ss_pred eEEEEEecCCcEEEeeeeec--------------CCCCCEEEEECCCCCEEEEEeC-C-----CCEEEEEEeCCCCCeee
Confidence 68889988888777665321 111112222222 445666542 1 1237777774 444443
Q ss_pred ee---cCCCCCCCCc---ceEEEEE--CCEEEEEeccCCCCCccCcEEEEECC-CCeEEEeeeCCCCCCCCCCceEEEEc
Q 012184 94 ME---TSGKVPVARG---GHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLE-TMTWDAVEVTQTPPAPRYDHSAALHA 164 (469)
Q Consensus 94 ~~---~~g~~p~~r~---~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~-t~~W~~~~~~g~~p~~r~~~~~~~~~ 164 (469)
+. ..+..|..|. ....+.+ ++++|+.+.. .+.+++|++. ++....+... ..+....-..++...
T Consensus 124 ~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~------~~~v~~~~~~~~g~~~~~~~~-~~~~g~~p~~~~~sp 196 (347)
T 3hfq_A 124 TDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG------SDKVYVYNVSDAGQLSEQSVL-TMEAGFGPRHLVFSP 196 (347)
T ss_dssp EEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT------TTEEEEEEECTTSCEEEEEEE-ECCTTCCEEEEEECT
T ss_pred cceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC------CCEEEEEEECCCCcEEEeeeE-EcCCCCCCceEEECC
Confidence 32 2222232221 1122333 4566665432 3468899987 5655543321 111111111233333
Q ss_pred Cc-EEEEEecCCCCcccCcEEEEECC--CCceEeeeecCCCCCC----CcceEEEEE-CC-EEEEEecCCCCCCcceEEE
Q 012184 165 NR-YLIVFGGCSHSIFFNDLHVLDLQ--TNEWSQPEIKGDLVTG----RAGHAGITI-DE-NWYIVGGGDNNNGCQETIV 235 (469)
Q Consensus 165 ~~-~l~v~GG~~~~~~~~~i~~~d~~--~~~W~~~~~~~~~p~~----r~~~~~~~~-~~-~l~v~GG~~~~~~~~d~~~ 235 (469)
++ ++|+.+..+ +.+.+|++. +..+..+......+.. .....++.. ++ .||+.+.. .+.+.+
T Consensus 197 dg~~l~v~~~~~-----~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~-----~~~v~v 266 (347)
T 3hfq_A 197 DGQYAFLAGELS-----SQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG-----YNTLAV 266 (347)
T ss_dssp TSSEEEEEETTT-----TEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET-----TTEEEE
T ss_pred CCCEEEEEeCCC-----CEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC-----CCEEEE
Confidence 44 577765432 345556554 5666544322222221 112223322 34 46666542 246778
Q ss_pred EECC-CCcEEEecc
Q 012184 236 LNMT-KLAWSILTS 248 (469)
Q Consensus 236 ~d~~-~~~W~~~~~ 248 (469)
||+. ...+..+..
T Consensus 267 ~~~~~~g~~~~~~~ 280 (347)
T 3hfq_A 267 FAVTADGHLTLIQQ 280 (347)
T ss_dssp EEECGGGCEEEEEE
T ss_pred EEECCCCcEEEeEE
Confidence 8875 334555443
No 99
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=96.19 E-value=0.85 Score=42.87 Aligned_cols=137 Identities=13% Similarity=0.042 Sum_probs=70.0
Q ss_pred cEEEEECCCCeEEEeeeCCCCCCCCCCceEEEE--cCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcc
Q 012184 131 DVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH--ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAG 208 (469)
Q Consensus 131 ~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~ 208 (469)
.+.++|+.+.+....-. +. ..+ -.++... .++.+++.|+.+ ..+.++|+.+.+....- . . .. ..-
T Consensus 177 ~v~lwd~~~~~~~~~~~-~h-~~~--v~~~~~~~~~~g~~l~sgs~D-----g~v~~wd~~~~~~~~~~-~-~-h~-~~v 243 (354)
T 2pbi_B 177 TCALWDVESGQLLQSFH-GH-GAD--VLCLDLAPSETGNTFVSGGCD-----KKAMVWDMRSGQCVQAF-E-T-HE-SDV 243 (354)
T ss_dssp EEEEEETTTCCEEEEEE-CC-SSC--EEEEEECCCSSCCEEEEEETT-----SCEEEEETTTCCEEEEE-C-C-CS-SCE
T ss_pred cEEEEeCCCCeEEEEEc-CC-CCC--eEEEEEEeCCCCCEEEEEeCC-----CeEEEEECCCCcEEEEe-c-C-CC-CCe
Confidence 48889998876543221 11 111 1111111 134577777765 35889999887654321 0 1 11 111
Q ss_pred eEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceE
Q 012184 209 HAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEV 287 (469)
Q Consensus 209 ~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~ 287 (469)
.+++.. ++.+++.|+.++ .+.+||+.+..-..+-. ... .......+...+++.+++.|+.++ .+
T Consensus 244 ~~v~~~p~~~~l~s~s~D~-----~v~lwd~~~~~~~~~~~--~~~----~~~~~~~~~~s~~g~~l~~g~~d~----~i 308 (354)
T 2pbi_B 244 NSVRYYPSGDAFASGSDDA-----TCRLYDLRADREVAIYS--KES----IIFGASSVDFSLSGRLLFAGYNDY----TI 308 (354)
T ss_dssp EEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEEC--CTT----CCSCEEEEEECTTSSEEEEEETTS----CE
T ss_pred EEEEEeCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEc--CCC----cccceeEEEEeCCCCEEEEEECCC----cE
Confidence 122222 456777777532 47788887764322211 110 112233444455567777777654 48
Q ss_pred EEEECCCC
Q 012184 288 FVMRLKPR 295 (469)
Q Consensus 288 ~~~d~~~~ 295 (469)
.+||+.+.
T Consensus 309 ~vwd~~~~ 316 (354)
T 2pbi_B 309 NVWDVLKG 316 (354)
T ss_dssp EEEETTTC
T ss_pred EEEECCCC
Confidence 88887554
No 100
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=96.16 E-value=0.71 Score=43.60 Aligned_cols=201 Identities=12% Similarity=0.027 Sum_probs=97.2
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 94 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~ 94 (469)
.++.+|+.++.-..+.... .......+..- +..|++... . ..++.+|+.++.-..+
T Consensus 61 ~l~~~d~~~g~~~~lt~~~----------------~~~~~~~~~spdg~~l~~~~~-~------~~l~~~d~~~g~~~~~ 117 (388)
T 3pe7_A 61 NYYLLDLNTQVATQLTEGR----------------GDNTFGGFLSPDDDALFYVKD-G------RNLMRVDLATLEENVV 117 (388)
T ss_dssp EEEEEETTTCEEEECCCSS----------------CBCSSSCEECTTSSEEEEEET-T------TEEEEEETTTCCEEEE
T ss_pred eEEEEeCCCCceEEeeeCC----------------CCCccceEEcCCCCEEEEEeC-C------CeEEEEECCCCcceee
Confidence 5888888888776665432 11111112222 444554432 1 3599999999886666
Q ss_pred ecCCCCCCCCcceEEEEE--CCEEEE-Ee--ccCC-------------CCCccCcEEEEECCCCeEEEeeeCCCCCCCCC
Q 012184 95 ETSGKVPVARGGHSVTLV--GSRLII-FG--GEDR-------------SRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY 156 (469)
Q Consensus 95 ~~~g~~p~~r~~~~~~~~--~~~lyi-~G--G~~~-------------~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~ 156 (469)
. ..|........... ++.+++ +- +... .......++++|+.++.-..+.... ...
T Consensus 118 ~---~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~----~~~ 190 (388)
T 3pe7_A 118 Y---QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQEN----QWL 190 (388)
T ss_dssp E---ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEES----SCE
T ss_pred e---echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCC----ccc
Confidence 5 23333222222222 233322 11 0000 0112367999999998766664211 111
Q ss_pred CceEEEEc-CcEEEEEecCCC-CcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceE
Q 012184 157 DHSAALHA-NRYLIVFGGCSH-SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQET 233 (469)
Q Consensus 157 ~~~~~~~~-~~~l~v~GG~~~-~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~ 233 (469)
.....-. ++..++|..... ......++.+|+.+.....+.. ..........+.. +++.+++...........+
T Consensus 191 -~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 266 (388)
T 3pe7_A 191 -GHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKT---HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFI 266 (388)
T ss_dssp -EEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCC---CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEE
T ss_pred -cccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeee---CCCCcccccceECCCCCEEEEEecCCCCCcceE
Confidence 2223333 444444443322 1224689999998776665531 1111111112222 4443333222222112359
Q ss_pred EEEECCCCcEEEeccCC
Q 012184 234 IVLNMTKLAWSILTSVK 250 (469)
Q Consensus 234 ~~~d~~~~~W~~~~~~~ 250 (469)
+++|+.+..-..+...+
T Consensus 267 ~~~d~~~g~~~~l~~~~ 283 (388)
T 3pe7_A 267 YSADPETLENRQLTSMP 283 (388)
T ss_dssp EEECTTTCCEEEEEEEC
T ss_pred EEEecCCCceEEEEcCC
Confidence 99999988876665443
No 101
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=96.14 E-value=0.85 Score=42.36 Aligned_cols=235 Identities=12% Similarity=0.005 Sum_probs=121.3
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCC--eEE
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETN--LCG 92 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~--~W~ 92 (469)
.+.++|+.+++........ . ....+.+++. ++.||+.... ...+.+||+... .-.
T Consensus 70 ~i~~~d~~~g~~~~~~~~~---------------~-~~~p~gia~d~~g~l~v~d~~------~~~v~~~~~~g~~~~~~ 127 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSGKN---------------L-FYLPHGLSIDTDGNYWVTDVA------LHQVFKLDPHSKEGPLL 127 (329)
T ss_dssp CEEEECTTTCCEEEEECTT---------------T-CSSEEEEEECTTSCEEEEETT------TTEEEEECTTCSSCCSE
T ss_pred cEEEEECCCCeEEeccCCC---------------c-cCCceEEEECCCCCEEEEECC------CCEEEEEeCCCCeEEEE
Confidence 5888888877754322211 1 1122333333 5678887542 234899998655 222
Q ss_pred EeecCC---CCCCCCcce-EEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCC----CCCCC-CceEE
Q 012184 93 VMETSG---KVPVARGGH-SVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP----PAPRY-DHSAA 161 (469)
Q Consensus 93 ~~~~~g---~~p~~r~~~-~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~----p~~r~-~~~~~ 161 (469)
.+...+ ..+...... .++.- ++.||+..++. .+.|.+||+....-..+...+.. +.... -+.++
T Consensus 128 ~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~-----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia 202 (329)
T 3fvz_A 128 ILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC-----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLA 202 (329)
T ss_dssp EESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS-----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEE
T ss_pred EecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC-----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEE
Confidence 332211 101111122 33333 46899987532 34589999665444444322221 11111 23444
Q ss_pred EEcC-cEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCC--CCCcceEEEEEC
Q 012184 162 LHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDN--NNGCQETIVLNM 238 (469)
Q Consensus 162 ~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~--~~~~~d~~~~d~ 238 (469)
+..+ +.||+....+ +.|.+||+.+++....-. .........+++...+.+|+..|... ......+.++|+
T Consensus 203 ~d~~~g~l~v~d~~~-----~~I~~~~~~~G~~~~~~~--~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~ 275 (329)
T 3fvz_A 203 LVPHLDQLCVADREN-----GRIQCFKTDTKEFVREIK--HASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNF 275 (329)
T ss_dssp EETTTTEEEEEETTT-----TEEEEEETTTCCEEEEEC--CTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEET
T ss_pred EECCCCEEEEEECCC-----CEEEEEECCCCcEEEEEe--ccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEc
Confidence 4444 7899876432 569999998776654321 11122222344444567777776422 222346889998
Q ss_pred CCCcEEEecc-CCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184 239 TKLAWSILTS-VKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP 294 (469)
Q Consensus 239 ~~~~W~~~~~-~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~ 294 (469)
.+......-. ... .......+.+++++.|||....++ .+++|+++.
T Consensus 276 ~~g~~~~~~~~~~~------~~~~p~~ia~~~dG~lyvad~~~~----~I~~~~~~~ 322 (329)
T 3fvz_A 276 SSGEIIDVFKPVRK------HFDMPHDIVASEDGTVYIGDAHTN----TVWKFTLTE 322 (329)
T ss_dssp TTCCEEEEECCSSS------CCSSEEEEEECTTSEEEEEESSSC----CEEEEEEEE
T ss_pred CCCeEEEEEcCCCC------ccCCeeEEEECCCCCEEEEECCCC----EEEEEeCCc
Confidence 8776554311 111 111223445566678998875443 588887743
No 102
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.12 E-value=1.1 Score=43.54 Aligned_cols=186 Identities=12% Similarity=0.061 Sum_probs=95.6
Q ss_pred EECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECC
Q 012184 60 KWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLE 138 (469)
Q Consensus 60 ~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~ 138 (469)
..++.+++.|+.++ .+..||+.+..-...- ....... .+++.. ++..++.|+.+. .+.+||+.
T Consensus 277 ~~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~---~~~~~~v-~~~~~~~~~~~l~sg~~dg------~i~vwd~~ 340 (464)
T 3v7d_B 277 SGHGNIVVSGSYDN------TLIVWDVAQMKCLYIL---SGHTDRI-YSTIYDHERKRCISASMDT------TIRIWDLE 340 (464)
T ss_dssp EEETTEEEEEETTS------CEEEEETTTTEEEEEE---CCCSSCE-EEEEEETTTTEEEEEETTS------CEEEEETT
T ss_pred cCCCCEEEEEeCCC------eEEEEECCCCcEEEEe---cCCCCCE-EEEEEcCCCCEEEEEeCCC------cEEEEECC
Confidence 33455666666432 2899999887654332 1111111 222222 445666666442 48999998
Q ss_pred CCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEE
Q 012184 139 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENW 218 (469)
Q Consensus 139 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l 218 (469)
+.+-...- .+ ....-..+.+.++ .++.|+.+ ..+.+||+.+..-.... . ........+...++.+
T Consensus 341 ~~~~~~~~-~~----h~~~v~~~~~~~~-~l~s~s~d-----g~v~vwd~~~~~~~~~~---~-~~~~~~~~~~~~~~~~ 405 (464)
T 3v7d_B 341 NGELMYTL-QG----HTALVGLLRLSDK-FLVSAAAD-----GSIRGWDANDYSRKFSY---H-HTNLSAITTFYVSDNI 405 (464)
T ss_dssp TTEEEEEE-CC----CSSCEEEEEECSS-EEEEEETT-----SEEEEEETTTCCEEEEE---E-CTTCCCEEEEEECSSE
T ss_pred CCcEEEEE-eC----CCCcEEEEEEcCC-EEEEEeCC-----CcEEEEECCCCceeeee---c-CCCCccEEEEEeCCCE
Confidence 87643322 11 1122233444444 66666654 35889998876532211 1 1112222334446677
Q ss_pred EEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEEC
Q 012184 219 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRL 292 (469)
Q Consensus 219 ~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~ 292 (469)
++.|+ + ..+.+||+.+..-........ ...+..+..+ +..+++.++.++ ..-++++|.
T Consensus 406 l~~~~-d-----g~i~iwd~~~g~~~~~~~~~~-------~~~v~~v~~~-~~~l~~~~~~~g--~~~i~~ldf 463 (464)
T 3v7d_B 406 LVSGS-E-----NQFNIYNLRSGKLVHANILKD-------ADQIWSVNFK-GKTLVAAVEKDG--QSFLEILDF 463 (464)
T ss_dssp EEEEE-T-----TEEEEEETTTCCEEESCTTTT-------CSEEEEEEEE-TTEEEEEEEETT--EEEEEEEEC
T ss_pred EEEec-C-----CeEEEEECCCCcEEehhhccC-------CCcEEEEEec-CCEEEEEEEeCC--eEEEEEeec
Confidence 77766 2 368899998876543211111 1222333333 567777776555 234556654
No 103
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=96.11 E-value=0.038 Score=52.48 Aligned_cols=196 Identities=11% Similarity=0.035 Sum_probs=90.8
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
++.+++.|+.++ .+..||+.++.|..+.. +........++.+ ++.+++.|+.+ ..+.+||+.+
T Consensus 22 ~g~~l~~~~~d~------~i~iw~~~~~~~~~~~~---~~~h~~~v~~~~~s~~~~~l~s~s~d------~~v~vwd~~~ 86 (377)
T 3dwl_C 22 QRTEFVTTTATN------QVELYEQDGNGWKHART---FSDHDKIVTCVDWAPKSNRIVTCSQD------RNAYVYEKRP 86 (377)
T ss_dssp SSSEEECCCSSS------CBCEEEEETTEEEECCC---BCCCSSCEEEEEECTTTCCEEEEETT------SSEEEC----
T ss_pred CCCEEEEecCCC------EEEEEEccCCceEEEEE---EecCCceEEEEEEeCCCCEEEEEeCC------CeEEEEEcCC
Confidence 556666766432 27778888888877652 2222222333333 35666676644 2488889887
Q ss_pred Ce-EEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc-eEeeeecCCCCCCCcceEEEEE-CC
Q 012184 140 MT-WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE-WSQPEIKGDLVTGRAGHAGITI-DE 216 (469)
Q Consensus 140 ~~-W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~-W~~~~~~~~~p~~r~~~~~~~~-~~ 216 (469)
.. |........ ....-.++....++.+++.|+.+ ..+.+||+.+.. |..+..... +....-.+++.. ++
T Consensus 87 ~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~ 158 (377)
T 3dwl_C 87 DGTWKQTLVLLR--LNRAATFVRWSPNEDKFAVGSGA-----RVISVCYFEQENDWWVSKHLKR-PLRSTILSLDWHPNN 158 (377)
T ss_dssp --CCCCEEECCC--CSSCEEEEECCTTSSCCEEEESS-----SCEEECCC-----CCCCEEECS-SCCSCEEEEEECTTS
T ss_pred CCceeeeeEecc--cCCceEEEEECCCCCEEEEEecC-----CeEEEEEECCcccceeeeEeec-ccCCCeEEEEEcCCC
Confidence 76 433322111 11111222222355566777654 357788887664 433321111 111122233333 45
Q ss_pred EEEEEecCCCCCCcceEEEEECCCCcEE----------------EeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccC
Q 012184 217 NWYIVGGGDNNNGCQETIVLNMTKLAWS----------------ILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN 280 (469)
Q Consensus 217 ~l~v~GG~~~~~~~~d~~~~d~~~~~W~----------------~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~ 280 (469)
.+++.|+.+ ..+.+||+...... .+..+ .....+..+...+++.+++.|+.+
T Consensus 159 ~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~~~~~d 226 (377)
T 3dwl_C 159 VLLAAGCAD-----RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-------PSGGWVHAVGFSPSGNALAYAGHD 226 (377)
T ss_dssp SEEEEEESS-----SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-------CCSSSEEEEEECTTSSCEEEEETT
T ss_pred CEEEEEeCC-----CEEEEEEEEecccCCCccccccccccchhhhhhcc-------cCCceEEEEEECCCCCEEEEEeCC
Confidence 677777754 24677777533211 11111 011223444455556677777765
Q ss_pred CCCCceEEEEECCCCC
Q 012184 281 GKYNNEVFVMRLKPRD 296 (469)
Q Consensus 281 ~~~~~~~~~~d~~~~~ 296 (469)
+ .+.+||+.+..
T Consensus 227 ~----~i~iwd~~~~~ 238 (377)
T 3dwl_C 227 S----SVTIAYPSAPE 238 (377)
T ss_dssp T----EEC-CEECSTT
T ss_pred C----cEEEEECCCCC
Confidence 4 46777776554
No 104
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=96.11 E-value=0.63 Score=43.99 Aligned_cols=188 Identities=8% Similarity=0.008 Sum_probs=99.8
Q ss_pred EEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcce-EEEEEC--CEEEEEeccCCCCCccCcEEEEECCCC
Q 012184 64 KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGH-SVTLVG--SRLIIFGGEDRSRKLLNDVHFLDLETM 140 (469)
Q Consensus 64 ~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~-~~~~~~--~~lyi~GG~~~~~~~~~~v~~~d~~t~ 140 (469)
.+++.|+.++ .+.+||+.+........ ........ +++... +.+++.|+.+ ..+.++|+.+.
T Consensus 87 ~~l~s~~~dg------~i~iwd~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~ 151 (383)
T 3ei3_B 87 TTVAVGSKGG------DIILWDYDVQNKTSFIQ---GMGPGDAITGMKFNQFNTNQLFVSSIR------GATTLRDFSGS 151 (383)
T ss_dssp TEEEEEEBTS------CEEEEETTSTTCEEEEC---CCSTTCBEEEEEEETTEEEEEEEEETT------TEEEEEETTSC
T ss_pred CEEEEEcCCC------eEEEEeCCCcccceeee---cCCcCCceeEEEeCCCCCCEEEEEeCC------CEEEEEECCCC
Confidence 5777776532 28899999887665542 11122222 233333 3566666543 34889999987
Q ss_pred eEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCE-E
Q 012184 141 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DEN-W 218 (469)
Q Consensus 141 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~-l 218 (469)
....+.... .....-.++....++.+++.|+.+ ..+.+||+....-..+. . ....-.+++.. ++. +
T Consensus 152 ~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~---~--h~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 152 VIQVFAKTD--SWDYWYCCVDVSVSRQMLATGDST-----GRLLLLGLDGHEIFKEK---L--HKAKVTHAEFNPRCDWL 219 (383)
T ss_dssp EEEEEECCC--CSSCCEEEEEEETTTTEEEEEETT-----SEEEEEETTSCEEEEEE---C--SSSCEEEEEECSSCTTE
T ss_pred ceEEEeccC--CCCCCeEEEEECCCCCEEEEECCC-----CCEEEEECCCCEEEEec---c--CCCcEEEEEECCCCCCE
Confidence 766654211 111122233334455577777654 46889998544333332 1 11112223332 233 7
Q ss_pred EEEecCCCCCCcceEEEEECCC----CcEEEeccCCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECC
Q 012184 219 YIVGGGDNNNGCQETIVLNMTK----LAWSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLK 293 (469)
Q Consensus 219 ~v~GG~~~~~~~~d~~~~d~~~----~~W~~~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~ 293 (469)
++.|+.+ ..+.+||+.+ ........ . ...+..+...+ ++.+++.|+.++ .+.+||+.
T Consensus 220 l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~--~-------~~~v~~~~~s~~~~~~l~~~~~d~----~i~iwd~~ 281 (383)
T 3ei3_B 220 MATSSVD-----ATVKLWDLRNIKDKNSYIAEMP--H-------EKPVNAAYFNPTDSTKLLTTDQRN----EIRVYSSY 281 (383)
T ss_dssp EEEEETT-----SEEEEEEGGGCCSTTCEEEEEE--C-------SSCEEEEEECTTTSCEEEEEESSS----EEEEEETT
T ss_pred EEEEeCC-----CEEEEEeCCCCCcccceEEEec--C-------CCceEEEEEcCCCCCEEEEEcCCC----cEEEEECC
Confidence 7777643 3578888876 33222111 0 12233444555 566777777654 58888886
Q ss_pred CCC
Q 012184 294 PRD 296 (469)
Q Consensus 294 ~~~ 296 (469)
+..
T Consensus 282 ~~~ 284 (383)
T 3ei3_B 282 DWS 284 (383)
T ss_dssp BTT
T ss_pred CCc
Confidence 543
No 105
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=96.10 E-value=0.77 Score=41.84 Aligned_cols=63 Identities=10% Similarity=0.084 Sum_probs=33.6
Q ss_pred CEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEEC----CEEEEEeccCCCCCccCcEEEEECC
Q 012184 63 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG----SRLIIFGGEDRSRKLLNDVHFLDLE 138 (469)
Q Consensus 63 ~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~----~~lyi~GG~~~~~~~~~~v~~~d~~ 138 (469)
+.+++.|+.+. .+..+|+.++.|..+... ........++.+. +.+++.|+.+ ..+.+||+.
T Consensus 67 g~~l~s~s~D~------~v~iWd~~~~~~~~~~~~---~~h~~~v~~v~~~p~~~g~~l~s~s~d------~~v~~wd~~ 131 (297)
T 2pm7_B 67 GTILASCSYDG------KVMIWKEENGRWSQIAVH---AVHSASVNSVQWAPHEYGPMLLVASSD------GKVSVVEFK 131 (297)
T ss_dssp CSEEEEEETTT------EEEEEEBSSSCBCCCEEE---CCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEEBC
T ss_pred CCEEEEEcCCC------EEEEEEcCCCceEEEEEe---ecCCCceeEEEeCcCCCCcEEEEEECC------CcEEEEEec
Confidence 56777776542 388888888776554321 1111122233332 4466666543 236777776
Q ss_pred CC
Q 012184 139 TM 140 (469)
Q Consensus 139 t~ 140 (469)
+.
T Consensus 132 ~~ 133 (297)
T 2pm7_B 132 EN 133 (297)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 106
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=96.10 E-value=0.76 Score=41.41 Aligned_cols=191 Identities=8% Similarity=-0.078 Sum_probs=98.4
Q ss_pred eeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEE
Q 012184 56 HCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVH 133 (469)
Q Consensus 56 ~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~ 133 (469)
++++.. ++.||+.... ...+++||+ ++....+.... ....-..++.- ++.+|+... ..+.++
T Consensus 102 ~~i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~------~~~~i~ 165 (299)
T 2z2n_A 102 YGITEGPNGDIWFTEMN------GNRIGRITD-DGKIREYELPN---KGSYPSFITLGSDNALWFTEN------QNNAIG 165 (299)
T ss_dssp EEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEECSS---TTCCEEEEEECTTSCEEEEET------TTTEEE
T ss_pred eeeEECCCCCEEEEecC------CceEEEECC-CCCEEEecCCC---CCCCCceEEEcCCCCEEEEeC------CCCEEE
Confidence 344443 5778876432 234899998 77766654211 11122333333 457887542 134699
Q ss_pred EEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCC-CcceEEE
Q 012184 134 FLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTG-RAGHAGI 212 (469)
Q Consensus 134 ~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~-r~~~~~~ 212 (469)
+||+ +++......... ...-..++...++.+|+.... .+.+++||+ ++.+..+.. +.. ...++++
T Consensus 166 ~~~~-~g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~----~~~~~~~~~i~ 231 (299)
T 2z2n_A 166 RITE-SGDITEFKIPTP---ASGPVGITKGNDDALWFVEII-----GNKIGRITT-SGEITEFKI----PTPNARPHAIT 231 (299)
T ss_dssp EECT-TCCEEEEECSST---TCCEEEEEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEEC----SSTTCCEEEEE
T ss_pred EEcC-CCcEEEeeCCCC---CCcceeEEECCCCCEEEEccC-----CceEEEECC-CCcEEEEEC----CCCCCCceeEE
Confidence 9999 777766532111 111223444445668876432 256899999 777665421 111 1222333
Q ss_pred EE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEE
Q 012184 213 TI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMR 291 (469)
Q Consensus 213 ~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d 291 (469)
.. ++.+|+.... .+.+.+||+ +.....+.. +.. ......+.. .++.|++... .+.+.+|+
T Consensus 232 ~~~~g~l~v~~~~-----~~~i~~~d~-~g~~~~~~~-~~~------~~~~~~i~~-~~g~l~v~~~-----~~~l~~~~ 292 (299)
T 2z2n_A 232 AGAGIDLWFTEWG-----ANKIGRLTS-NNIIEEYPI-QIK------SAEPHGICF-DGETIWFAME-----CDKIGKLT 292 (299)
T ss_dssp ECSTTCEEEEETT-----TTEEEEEET-TTEEEEEEC-SSS------SCCEEEEEE-CSSCEEEEET-----TTEEEEEE
T ss_pred ECCCCCEEEeccC-----CceEEEECC-CCceEEEeC-CCC------CCccceEEe-cCCCEEEEec-----CCcEEEEE
Confidence 33 4577776421 246889998 444444321 111 111222223 4567777653 23588888
Q ss_pred CCCC
Q 012184 292 LKPR 295 (469)
Q Consensus 292 ~~~~ 295 (469)
+.+.
T Consensus 293 ~~~~ 296 (299)
T 2z2n_A 293 LIKD 296 (299)
T ss_dssp EC--
T ss_pred cCcc
Confidence 7654
No 107
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=96.09 E-value=0.54 Score=45.37 Aligned_cols=92 Identities=10% Similarity=0.045 Sum_probs=47.8
Q ss_pred CcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCC
Q 012184 181 NDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASE 258 (469)
Q Consensus 181 ~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~ 258 (469)
..|.++|+.+..-...... .. ...+++.. ++.+++.+|... +.+.+||+.+.. .+..+.+..
T Consensus 301 ~~I~iwd~~t~~~~~~~~~---~~--~v~~~~~~~~~~~lv~~sg~~d----~~I~iwd~~~~~--~v~~l~gH~----- 364 (420)
T 4gga_A 301 RHIRIWNVCSGACLSAVDA---HS--QVCSILWSPHYKELISGHGFAQ----NQLVIWKYPTMA--KVAELKGHT----- 364 (420)
T ss_dssp CEEEEEETTTTEEEEEEEC---SS--CEEEEEEETTTTEEEEEECTTT----CCEEEEETTTCC--EEEEECCCS-----
T ss_pred CEEEEEeCCccccceeecc---cc--ceeeeeecCCCCeEEEEEecCC----CEEEEEECCCCc--EEEEEcCCC-----
Confidence 3588999888765442211 11 11222222 344555545322 358889987654 333333221
Q ss_pred CcceEEEEEcCCcEEEEEeccCCCCCceEEEEECC
Q 012184 259 GLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK 293 (469)
Q Consensus 259 ~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~ 293 (469)
..+..+...+++.+++.||.++ .+.++|+.
T Consensus 365 -~~V~~l~~spdg~~l~S~s~D~----tvriWdv~ 394 (420)
T 4gga_A 365 -SRVLSLTMSPDGATVASAAADE----TLRLWRCF 394 (420)
T ss_dssp -SCEEEEEECTTSSCEEEEETTT----EEEEECCS
T ss_pred -CCEEEEEEcCCCCEEEEEecCC----eEEEEECC
Confidence 1233444555667777888765 36666664
No 108
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.07 E-value=0.86 Score=47.95 Aligned_cols=223 Identities=5% Similarity=-0.002 Sum_probs=110.6
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCC------
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLET------ 88 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t------ 88 (469)
.+.+||+.++++......... .......-+++... ++.|++. ... .+ +++||+.+
T Consensus 393 GL~~~~~~~~~~~~~~~~~~~-----------~~~~~~~v~~i~~d~~g~lWig-T~~-~G-----l~~~~~~~~~~~~~ 454 (758)
T 3ott_A 393 SINRYDYATRQFIHYNIVDNT-----------GTYNTNWTYYIFEDTAGQLWIS-TCL-GG-----IFVVDKHKLMQSTS 454 (758)
T ss_dssp EEEEEETTTTEEEEEEEECCC-------------CBSSSEEEEEECTTSEEEEE-ESS-SC-----EEEEEHHHHHHCCS
T ss_pred cHhhcCcCCCcEEEeecCCCc-----------CCCCCceEEEEEEcCCCCEEEE-ECC-Cc-----eEEEccccccccCC
Confidence 578899999988877643210 00011122333333 4667763 221 12 78888653
Q ss_pred CeEE---EeecCCCCCCCCcceEEEE-ECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEc
Q 012184 89 NLCG---VMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA 164 (469)
Q Consensus 89 ~~W~---~~~~~g~~p~~r~~~~~~~-~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~ 164 (469)
..+. .......++.... +++.. -++.|+++||.. +-+++||+.+.++...... ..+......+++...
T Consensus 455 ~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~~~t~------~Gl~~~d~~~~~~~~~~~~-~~~~~~~~~~i~~d~ 526 (758)
T 3ott_A 455 GQYIAEQNYSVHNGLSGMFI-NQIIPDNEGNVWVLLYNN------KGIDKINPRTREVTKLFAD-ELTGEKSPNYLLCDE 526 (758)
T ss_dssp SEEECSEEECGGGTCSCSCE-EEEEECTTSCEEEEETTC------SSEEEEETTTTEEEEECTT-TSCGGGCEEEEEECT
T ss_pred cceeccccccccccccccee-eeEEEcCCCCEEEEccCC------CCcEEEeCCCCceEEecCC-CcCCCcccceEEECC
Confidence 2232 1111111222111 12222 246788876643 2399999999999877421 111111222333334
Q ss_pred CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEE
Q 012184 165 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWS 244 (469)
Q Consensus 165 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~ 244 (469)
++.|++- .. +-+.+||+.+..+.... ...+|. ....+++.-++.|++... +-+.+||+.+....
T Consensus 527 ~g~lWig-t~------~Gl~~~~~~~~~~~~~~-~~gl~~-~~i~~i~~~~g~lWi~t~-------~Gl~~~~~~~~~~~ 590 (758)
T 3ott_A 527 DGLLWVG-FH------GGVMRINPKDESQQSIS-FGSFSN-NEILSMTCVKNSIWVSTT-------NGLWIIDRKTMDAR 590 (758)
T ss_dssp TSCEEEE-ET------TEEEEECC--CCCCBCC-CCC----CCEEEEEEETTEEEEEES-------SCEEEEETTTCCEE
T ss_pred CCCEEEE-ec------CceEEEecCCCceEEec-ccCCCc-cceEEEEECCCCEEEECC-------CCeEEEcCCCceeE
Confidence 5778763 21 24899999988876653 122332 223344444677777642 35889999988776
Q ss_pred EeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184 245 ILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP 294 (469)
Q Consensus 245 ~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~ 294 (469)
... ++.. . +.. ++....++.|+ |||.+| +..|+|+.
T Consensus 591 ~~~-~~~~----~--~~~-~~~~~~~G~l~-fG~~~G-----l~~f~p~~ 626 (758)
T 3ott_A 591 QQN-MTNK----R--FTS-LLFDPKEDCVY-LGGADG-----FGISHSNL 626 (758)
T ss_dssp EC---CCC----C--CSE-EEEETTTTEEE-EECBSE-----EEEEEC--
T ss_pred Eec-CCCC----c--eee-eEEECCCCcEE-EecCCc-----eEEEChhh
Confidence 542 2211 1 121 22222245555 677544 66777753
No 109
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.07 E-value=0.71 Score=47.98 Aligned_cols=115 Identities=16% Similarity=0.124 Sum_probs=62.6
Q ss_pred ceEEEEccCCc--eeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe--E
Q 012184 16 VVMVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--C 91 (469)
Q Consensus 16 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W 91 (469)
.++.+|..+++ |+.-...... .. +.........+.++.++.||+... ...++.+|..|++ |
T Consensus 88 ~v~AlD~~tG~~~W~~~~~~~~~-------~~-~~~~~~~~~~~~a~~~~~v~v~~~-------dg~l~alD~~tG~~~W 152 (677)
T 1kb0_A 88 VVHAIDTRTGNRIWTYDPQIDRS-------TG-FKGCCDVVNRGVALWKGKVYVGAW-------DGRLIALDAATGKEVW 152 (677)
T ss_dssp CEEEEETTTTEEEEEECCCCCGG-------GG-GGSSSCSCCCCCEEETTEEEEECT-------TSEEEEEETTTCCEEE
T ss_pred eEEEEECCCCcEEEEEcCCCCcc-------cc-ccccccCCCCCceEECCEEEEEcC-------CCEEEEEECCCCCEEe
Confidence 78999998865 8765543210 00 000001122345667888888642 1349999998886 8
Q ss_pred EEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEee
Q 012184 92 GVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVE 146 (469)
Q Consensus 92 ~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~~ 146 (469)
+.-.............+.++.++.+|+-.+.. .......++.||..|++ |+.-.
T Consensus 153 ~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~-~~~~~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 153 HQNTFEGQKGSLTITGAPRVFKGKVIIGNGGA-EYGVRGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp EEETTTTCCSSCBCCSCCEEETTEEEECCBCT-TTCCBCEEEEEETTTCCEEEEEES
T ss_pred eecCCcCcCcCcccccCcEEECCEEEEEeccc-ccCCCCEEEEEECCCCcEEEEecc
Confidence 76532011111112223345677777643322 11134679999998875 77643
No 110
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=96.01 E-value=1 Score=42.12 Aligned_cols=171 Identities=9% Similarity=0.079 Sum_probs=84.0
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 93 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~ 93 (469)
.+..||..++.|........ .......++.+ ++..++.|+.+.. +..+|..+..+..
T Consensus 39 ~i~iw~~~~~~~~~~~~~~~---------------~h~~~v~~~~~sp~g~~l~s~s~D~~------v~iw~~~~~~~~~ 97 (345)
T 3fm0_A 39 RIRIWGTEGDSWICKSVLSE---------------GHQRTVRKVAWSPCGNYLASASFDAT------TCIWKKNQDDFEC 97 (345)
T ss_dssp CEEEEEEETTEEEEEEEECS---------------SCSSCEEEEEECTTSSEEEEEETTSC------EEEEEECCC-EEE
T ss_pred eEEEEEcCCCcceeeeeecc---------------ccCCcEEEEEECCCCCEEEEEECCCc------EEEEEccCCCeEE
Confidence 67788888888765443211 01112222333 5667777765432 6777777776655
Q ss_pred eecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCC-eEEEeeeCCCCCCCCCCceEEEEcCcEEEE
Q 012184 94 METSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM-TWDAVEVTQTPPAPRYDHSAALHANRYLIV 170 (469)
Q Consensus 94 ~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~-~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v 170 (469)
+... ........++.+ ++.+++.|+.+. .+.++|+.+. .+..+....... ..-.+++...++.+++
T Consensus 98 ~~~~---~~h~~~v~~v~~sp~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~ 166 (345)
T 3fm0_A 98 VTTL---EGHENEVKSVAWAPSGNLLATCSRDK------SVWVWEVDEEDEYECVSVLNSHT--QDVKHVVWHPSQELLA 166 (345)
T ss_dssp EEEE---CCCSSCEEEEEECTTSSEEEEEETTS------CEEEEEECTTSCEEEEEEECCCC--SCEEEEEECSSSSCEE
T ss_pred EEEc---cCCCCCceEEEEeCCCCEEEEEECCC------eEEEEECCCCCCeEEEEEecCcC--CCeEEEEECCCCCEEE
Confidence 4421 111112223333 456777776543 3788887664 233332211111 1111222233555777
Q ss_pred EecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCC
Q 012184 171 FGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGD 225 (469)
Q Consensus 171 ~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~ 225 (469)
.|+.+ ..+.+||..+..|..+....... ..-.+++.. ++..++.|+.+
T Consensus 167 s~s~d-----~~i~~w~~~~~~~~~~~~~~~h~--~~v~~l~~sp~g~~l~s~s~D 215 (345)
T 3fm0_A 167 SASYD-----DTVKLYREEEDDWVCCATLEGHE--STVWSLAFDPSGQRLASCSDD 215 (345)
T ss_dssp EEETT-----SCEEEEEEETTEEEEEEEECCCS--SCEEEEEECTTSSEEEEEETT
T ss_pred EEeCC-----CcEEEEEecCCCEEEEEEecCCC--CceEEEEECCCCCEEEEEeCC
Confidence 77655 35788888888876543221111 111122222 45677777654
No 111
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=96.01 E-value=0.5 Score=43.64 Aligned_cols=203 Identities=11% Similarity=0.087 Sum_probs=92.4
Q ss_pred CEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--C--CEEEEEeccCCCCCccCcEEEEECC
Q 012184 63 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--G--SRLIIFGGEDRSRKLLNDVHFLDLE 138 (469)
Q Consensus 63 ~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~--~~lyi~GG~~~~~~~~~~v~~~d~~ 138 (469)
+.+++.|+.+. .+..+|+.++.|..+... ........++.+ + +.+++.|+.+. .+.++|+.
T Consensus 71 ~~~l~s~s~D~------~v~iWd~~~~~~~~~~~~---~~h~~~V~~v~~~p~~~g~~lasgs~D~------~i~lwd~~ 135 (316)
T 3bg1_A 71 GNILASCSYDR------KVIIWREENGTWEKSHEH---AGHDSSVNSVCWAPHDYGLILACGSSDG------AISLLTYT 135 (316)
T ss_dssp SSCEEEEETTS------CEEEECCSSSCCCEEEEE---CCCSSCCCEEEECCTTTCSCEEEECSSS------CEEEEEEC
T ss_pred CCEEEEEECCC------EEEEEECCCCcceEEEEc---cCCCCceEEEEECCCCCCcEEEEEcCCC------CEEEEecC
Confidence 56777776543 288889888777554321 111111222233 2 45666666543 37777776
Q ss_pred CC-eEEEeeeCCCCCCCCCCceEEEEc------------------CcEEEEEecCCCCcccCcEEEEECCC-CceEeeee
Q 012184 139 TM-TWDAVEVTQTPPAPRYDHSAALHA------------------NRYLIVFGGCSHSIFFNDLHVLDLQT-NEWSQPEI 198 (469)
Q Consensus 139 t~-~W~~~~~~g~~p~~r~~~~~~~~~------------------~~~l~v~GG~~~~~~~~~i~~~d~~~-~~W~~~~~ 198 (469)
+. .|...........+. ..+.+. ++.+++.|+.+ +.+.++|+.+ ..|..+..
T Consensus 136 ~~~~~~~~~~~~~h~~~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D-----~~v~lWd~~~~~~~~~~~~ 207 (316)
T 3bg1_A 136 GEGQWEVKKINNAHTIGC---NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCD-----NLIKLWKEEEDGQWKEEQK 207 (316)
T ss_dssp SSSCEEECCBTTSSSSCB---CCCEECCCCCC------CCSCCCCCCCBEECCBTT-----SBCCEEEECTTSCEEEEEC
T ss_pred CCCCcceeeeeccccCCc---ceEEEccccCCccccccccccCccccceEEEecCC-----CeEEEEEeCCCCccceeee
Confidence 65 464432211100000 001110 12355666544 3456677653 34655431
Q ss_pred cCCCCCCCcceEEEEEC------CEEEEEecCCCCCCcceEEEEECCC---CcEEEeccCCCCCCCCCCCcceEEEEEcC
Q 012184 199 KGDLVTGRAGHAGITID------ENWYIVGGGDNNNGCQETIVLNMTK---LAWSILTSVKGRNPLASEGLSVCSAIIEG 269 (469)
Q Consensus 199 ~~~~p~~r~~~~~~~~~------~~l~v~GG~~~~~~~~d~~~~d~~~---~~W~~~~~~~~~~p~~r~~~s~~~~~~~~ 269 (469)
+......-..+.+. +.+++.|+.++ .+.++|+.+ ..|... .+.. ....+..+...+
T Consensus 208 ---l~~h~~~V~~v~~sp~~~~~~~~las~s~D~-----~v~iw~~~~~~~~~~~~~-~~~~------~~~~v~~v~~sp 272 (316)
T 3bg1_A 208 ---LEAHSDWVRDVAWAPSIGLPTSTIASCSQDG-----RVFIWTCDDASSNTWSPK-LLHK------FNDVVWHVSWSI 272 (316)
T ss_dssp ---CBCCSSCEEEEECCCCSSCSCCEEEEEETTC-----EEEEEECSSTTCCCCBCC-EEEE------CSSCEEEEEECT
T ss_pred ---cccCCCceEEEEecCCCCCCCceEEEEcCCC-----eEEEEEccCccccchhhh-hhhc------CCCcEEEEEEcC
Confidence 11111111122221 25667766432 466777654 222210 0000 011233344455
Q ss_pred CcEEEEEeccCCCCCceEEEEECC-CCCCCCccccCCCc
Q 012184 270 EHHLVAFGGYNGKYNNEVFVMRLK-PRDIPRPKIFQSPA 307 (469)
Q Consensus 270 ~~~l~v~GG~~~~~~~~~~~~d~~-~~~w~~~~~~~~~~ 307 (469)
++.+++.||.++. +.+|+.. ...|..+..+....
T Consensus 273 ~g~~las~~~D~~----v~lw~~~~~g~~~~~~~~~~~~ 307 (316)
T 3bg1_A 273 TANILAVSGGDNK----VTLWKESVDGQWVCISDVNKGQ 307 (316)
T ss_dssp TTCCEEEEESSSC----EEEEEECTTSCEEEEEECC---
T ss_pred CCCEEEEEcCCCe----EEEEEECCCCcEEEeeeccCCC
Confidence 6677788886653 5566654 35676665555443
No 112
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=96.01 E-value=1 Score=42.50 Aligned_cols=176 Identities=11% Similarity=0.080 Sum_probs=89.8
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE---CCEEEEEccccCCCCCcceEEEEECCCCeEE
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW---GTKLLILGGHYKKSSDSMIVRFIDLETNLCG 92 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~---~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~ 92 (469)
.+..||+.++.....-... .......++.+ ++.+++.|+.+ ..+..+|+.+....
T Consensus 97 ~i~iwd~~~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~ 154 (383)
T 3ei3_B 97 DIILWDYDVQNKTSFIQGM----------------GPGDAITGMKFNQFNTNQLFVSSIR------GATTLRDFSGSVIQ 154 (383)
T ss_dssp CEEEEETTSTTCEEEECCC----------------STTCBEEEEEEETTEEEEEEEEETT------TEEEEEETTSCEEE
T ss_pred eEEEEeCCCcccceeeecC----------------CcCCceeEEEeCCCCCCEEEEEeCC------CEEEEEECCCCceE
Confidence 6788898877765544321 11112222333 34677776543 23888999887776
Q ss_pred EeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcE-EE
Q 012184 93 VMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRY-LI 169 (469)
Q Consensus 93 ~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~-l~ 169 (469)
.+... ........++.+ ++.+++.|+.+ ..+.+||+....-..+.. ....-.++....++. ++
T Consensus 155 ~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~l 220 (383)
T 3ei3_B 155 VFAKT---DSWDYWYCCVDVSVSRQMLATGDST------GRLLLLGLDGHEIFKEKL-----HKAKVTHAEFNPRCDWLM 220 (383)
T ss_dssp EEECC---CCSSCCEEEEEEETTTTEEEEEETT------SEEEEEETTSCEEEEEEC-----SSSCEEEEEECSSCTTEE
T ss_pred EEecc---CCCCCCeEEEEECCCCCEEEEECCC------CCEEEEECCCCEEEEecc-----CCCcEEEEEECCCCCCEE
Confidence 66521 111111222222 45566666643 358899986554444331 111112233333444 67
Q ss_pred EEecCCCCcccCcEEEEECCC----CceEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCc
Q 012184 170 VFGGCSHSIFFNDLHVLDLQT----NEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLA 242 (469)
Q Consensus 170 v~GG~~~~~~~~~i~~~d~~~----~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~ 242 (469)
+.|+.+ ..+.+||+.+ ....... .....-.+++.. ++.+++.|+.+ ..+.+||+.+..
T Consensus 221 ~s~~~d-----~~i~iwd~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~~l~~~~~d-----~~i~iwd~~~~~ 284 (383)
T 3ei3_B 221 ATSSVD-----ATVKLWDLRNIKDKNSYIAEM-----PHEKPVNAAYFNPTDSTKLLTTDQR-----NEIRVYSSYDWS 284 (383)
T ss_dssp EEEETT-----SEEEEEEGGGCCSTTCEEEEE-----ECSSCEEEEEECTTTSCEEEEEESS-----SEEEEEETTBTT
T ss_pred EEEeCC-----CEEEEEeCCCCCcccceEEEe-----cCCCceEEEEEcCCCCCEEEEEcCC-----CcEEEEECCCCc
Confidence 777654 3588899876 2222211 111122223322 35667777643 357888886543
No 113
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=96.01 E-value=0.11 Score=39.33 Aligned_cols=70 Identities=13% Similarity=0.163 Sum_probs=30.7
Q ss_pred hhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHH
Q 012184 375 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFE 444 (469)
Q Consensus 375 ~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~----~~e~e~~~~~q~~~~~~ 444 (469)
..++.++...+....+++.++..++..++.+...+...+..+.+...++...+ .-|.++.-+.+.++.++
T Consensus 26 e~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 26 EQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444444444444444444555544444444444444444444433333332 23334444444444433
No 114
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=95.99 E-value=0.59 Score=43.46 Aligned_cols=106 Identities=17% Similarity=0.114 Sum_probs=57.7
Q ss_pred CEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE---CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184 63 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 63 ~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
+.+++.|+.++ .+.+||+.++.-...-. .....-.++.+ ++.+++.|+.+. .+.+||+.+
T Consensus 85 ~~~l~~~~~dg------~i~v~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~l~s~~~dg------~i~iwd~~~ 147 (366)
T 3k26_A 85 HPLLAVAGSRG------IIRIINPITMQCIKHYV-----GHGNAINELKFHPRDPNLLLSVSKDH------ALRLWNIQT 147 (366)
T ss_dssp CEEEEEEETTC------EEEEECTTTCCEEEEEE-----SCCSCEEEEEECSSCTTEEEEEETTS------CEEEEETTT
T ss_pred CCEEEEecCCC------EEEEEEchhceEeeeec-----CCCCcEEEEEECCCCCCEEEEEeCCC------eEEEEEeec
Confidence 56777777442 38899988776433221 01112222333 456777776533 489999988
Q ss_pred CeEEEeeeCCCCC-CCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc
Q 012184 140 MTWDAVEVTQTPP-APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE 192 (469)
Q Consensus 140 ~~W~~~~~~g~~p-~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~ 192 (469)
.+-..... ... ....-.++....++..++.|+.+ +.+.+||+.+..
T Consensus 148 ~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 194 (366)
T 3k26_A 148 DTLVAIFG--GVEGHRDEVLSADYDLLGEKIMSCGMD-----HSLKLWRINSKR 194 (366)
T ss_dssp TEEEEEEC--STTSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEESCSHH
T ss_pred CeEEEEec--ccccccCceeEEEECCCCCEEEEecCC-----CCEEEEECCCCc
Confidence 87544321 111 11122223333355566777654 458899987654
No 115
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=95.99 E-value=0.17 Score=47.00 Aligned_cols=158 Identities=13% Similarity=0.090 Sum_probs=78.8
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCccCcEEEEECCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
++.+|+.++.. ..++++|+.+++....... +....-+.++.. ++ .+|+.+.. .+.+++||+.+
T Consensus 10 ~~~~~v~~~~~------~~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~~~v~~~~------~~~i~~~d~~t 74 (349)
T 1jmx_B 10 GHEYMIVTNYP------NNLHVVDVASDTVYKSCVM---PDKFGPGTAMMAPDNRTAYVLNNH------YGDIYGIDLDT 74 (349)
T ss_dssp TCEEEEEEETT------TEEEEEETTTTEEEEEEEC---SSCCSSCEEEECTTSSEEEEEETT------TTEEEEEETTT
T ss_pred CCEEEEEeCCC------CeEEEEECCCCcEEEEEec---CCCCCCceeEECCCCCEEEEEeCC------CCcEEEEeCCC
Confidence 67788877642 3499999999876544321 210012233332 33 57776532 34699999998
Q ss_pred CeEEEeeeCCCCCC--CCCCceEEEEcCc-EEEEEecC---CCC---cccCcEEEEECCCCceEeeeecCCCCCCCcceE
Q 012184 140 MTWDAVEVTQTPPA--PRYDHSAALHANR-YLIVFGGC---SHS---IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHA 210 (469)
Q Consensus 140 ~~W~~~~~~g~~p~--~r~~~~~~~~~~~-~l~v~GG~---~~~---~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~ 210 (469)
++.......+..+. ...-+.++...++ ++|+.+.. ... ...+.+++||+.++.-........ .++..++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~ 152 (349)
T 1jmx_B 75 CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--MPRQVYL 152 (349)
T ss_dssp TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--CCSSCCC
T ss_pred CcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--CCCcccc
Confidence 87654332211110 1112333333344 55554421 000 012579999988744222110111 1222233
Q ss_pred EEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEE
Q 012184 211 GITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWS 244 (469)
Q Consensus 211 ~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~ 244 (469)
++.. ++++|+.++ +++++|+.+..-.
T Consensus 153 ~~~s~dg~l~~~~~--------~i~~~d~~~~~~~ 179 (349)
T 1jmx_B 153 MRAADDGSLYVAGP--------DIYKMDVKTGKYT 179 (349)
T ss_dssp EEECTTSCEEEESS--------SEEEECTTTCCEE
T ss_pred eeECCCCcEEEccC--------cEEEEeCCCCcee
Confidence 3332 456666422 4889998776644
No 116
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=95.96 E-value=0.88 Score=40.98 Aligned_cols=212 Identities=9% Similarity=-0.031 Sum_probs=107.2
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 94 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~ 94 (469)
.+..||+. +++..+.... .....++++.. ++.||+.... ...++.||+. +....+
T Consensus 84 ~v~~~d~~-g~~~~~~~~~----------------~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~ 139 (300)
T 2qc5_A 84 KIGKLSKK-GGFTEYPLPQ----------------PDSGPYGITEGLNGDIWFTQLN------GDRIGKLTAD-GTIYEY 139 (300)
T ss_dssp EEEEECTT-SCEEEEECSS----------------TTCCEEEEEECSTTCEEEEETT------TTEEEEECTT-SCEEEE
T ss_pred eEEEECCC-CCeEEecCCC----------------CCCCCccceECCCCCEEEEccC------CCeEEEECCC-CCEEEc
Confidence 57778877 6665443321 11223344443 5778876432 2348999988 766655
Q ss_pred ecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEec
Q 012184 95 ETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG 173 (469)
Q Consensus 95 ~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG 173 (469)
.... ....-+.++.- +++||+... ..+.+++||+ +++.......+.. ..-..++...++.+|+...
T Consensus 140 ~~~~---~~~~~~~i~~d~~g~l~v~~~------~~~~i~~~~~-~g~~~~~~~~~~~---~~~~~i~~d~~g~l~v~~~ 206 (300)
T 2qc5_A 140 DLPN---KGSYPAFITLGSDNALWFTEN------QNNSIGRITN-TGKLEEYPLPTNA---AAPVGITSGNDGALWFVEI 206 (300)
T ss_dssp ECSS---TTCCEEEEEECTTSSEEEEET------TTTEEEEECT-TCCEEEEECSSTT---CCEEEEEECTTSSEEEEET
T ss_pred cCCC---CCCCceeEEECCCCCEEEEec------CCCeEEEECC-CCcEEEeeCCCCC---CCcceEEECCCCCEEEEcc
Confidence 4211 11112233322 456777542 1345899998 6776665321111 1122333333566887543
Q ss_pred CCCCcccCcEEEEECCCCceEeeeecCCCCCCCc-ceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCC
Q 012184 174 CSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRA-GHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKG 251 (469)
Q Consensus 174 ~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~-~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~ 251 (469)
. .+.+++||+ +..+..... +.... ..+++.. ++.+|+.... .+.+.+||+ +........ +.
T Consensus 207 ~-----~~~i~~~~~-~g~~~~~~~----~~~~~~~~~i~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~-~~ 269 (300)
T 2qc5_A 207 M-----GNKIGRITT-TGEISEYDI----PTPNARPHAITAGKNSEIWFTEWG-----ANQIGRITN-DNTIQEYQL-QT 269 (300)
T ss_dssp T-----TTEEEEECT-TCCEEEEEC----SSTTCCEEEEEECSTTCEEEEETT-----TTEEEEECT-TSCEEEEEC-CS
T ss_pred C-----CCEEEEEcC-CCcEEEEEC----CCCCCCceEEEECCCCCEEEeccC-----CCeEEEECC-CCcEEEEEC-Cc
Confidence 2 246899998 566655431 11112 2233332 4577776521 246889998 455554321 11
Q ss_pred CCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECC
Q 012184 252 RNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK 293 (469)
Q Consensus 252 ~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~ 293 (469)
.. .....+..++++.|++.+. . .+++||++
T Consensus 270 ~~------~~~~~i~~~~~g~l~v~~~-----~-~i~~~~p~ 299 (300)
T 2qc5_A 270 EN------AEPHGITFGKDGSVWFALK-----C-KIGKLNLN 299 (300)
T ss_dssp TT------CCCCCEEECTTSCEEEECS-----S-EEEEEEEC
T ss_pred cC------CccceeEeCCCCCEEEEcc-----C-ceEEeCCC
Confidence 11 0111233444566776543 2 57888764
No 117
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=95.95 E-value=0.079 Score=39.67 Aligned_cols=20 Identities=15% Similarity=0.345 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 012184 428 TIENEVQILRQQKSAFEQEM 447 (469)
Q Consensus 428 ~~e~e~~~~~q~~~~~~~~~ 447 (469)
++..|.+++++++..+.+++
T Consensus 87 kl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 87 KLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 118
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=95.95 E-value=0.21 Score=52.23 Aligned_cols=105 Identities=6% Similarity=-0.079 Sum_probs=50.0
Q ss_pred cEEEEECCC-CceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCc
Q 012184 182 DLHVLDLQT-NEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGL 260 (469)
Q Consensus 182 ~i~~~d~~~-~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~ 260 (469)
.++++|+.+ ..-..+... .........++.-+++.++++..+......+++++|+.+.....+....... .....
T Consensus 264 ~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~--~~~~~ 339 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLG--KEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPT--WVPLH 339 (741)
T ss_dssp EEEEECSSTTCCCEEECCC--SCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSS--CCCCC
T ss_pred EEEEEECCCCCceEEecCC--CCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCC--cCCcC
Confidence 788889887 765544311 0111111122223344444444333334568999999988876653321110 00001
Q ss_pred ceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184 261 SVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP 294 (469)
Q Consensus 261 s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~ 294 (469)
....+ .+++.+++.++.++ ...+|.+|...
T Consensus 340 ~~~~~--spdg~~~~~~~~~g--~~~l~~~~~~~ 369 (741)
T 2ecf_A 340 NSLRF--LDDGSILWSSERTG--FQHLYRIDSKG 369 (741)
T ss_dssp SCCEE--CTTSCEEEEECTTS--SCEEEEECSSS
T ss_pred CceEE--CCCCeEEEEecCCC--ccEEEEEcCCC
Confidence 11122 22334555555443 35677777543
No 119
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=95.93 E-value=0.19 Score=47.53 Aligned_cols=148 Identities=9% Similarity=0.047 Sum_probs=74.2
Q ss_pred CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEE-c-CcEEEEEecCCCCcccCcEEEEECCC
Q 012184 113 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-A-NRYLIVFGGCSHSIFFNDLHVLDLQT 190 (469)
Q Consensus 113 ~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~-~~~l~v~GG~~~~~~~~~i~~~d~~~ 190 (469)
++.+++.|+.+. .|.+||+.+++....-. + ....-..+.+ . ++.+++.++.+ ..+.++|+.+
T Consensus 150 dg~~l~sgs~dg------~v~iwd~~~~~~~~~~~-~----h~~~v~~v~~s~~~~~~~~s~~~d-----g~v~~wd~~~ 213 (357)
T 4g56_B 150 DGTQAVSGGKDF------SVKVWDLSQKAVLKSYN-A----HSSEVNCVAACPGKDTIFLSCGED-----GRILLWDTRK 213 (357)
T ss_dssp SSSEEEEEETTS------CEEEEETTTTEEEEEEC-C----CSSCEEEEEECTTCSSCEEEEETT-----SCEEECCTTS
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEEc-C----CCCCEEEEEEccCCCceeeeeccC-----CceEEEECCC
Confidence 456666776543 38899999887544321 1 1111122222 2 33466777654 3477888876
Q ss_pred CceEeeeecCCCCCCCc-ceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEE
Q 012184 191 NEWSQPEIKGDLVTGRA-GHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAII 267 (469)
Q Consensus 191 ~~W~~~~~~~~~p~~r~-~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~ 267 (469)
.+-.... ....... ..+++.. ++.+++.|+.+ ..+.+||+.+..-.. .+... ...+..+..
T Consensus 214 ~~~~~~~---~~~~~~~~v~~v~~sp~~~~~la~g~~d-----~~i~~wd~~~~~~~~--~~~~~------~~~v~~l~~ 277 (357)
T 4g56_B 214 PKPATRI---DFCASDTIPTSVTWHPEKDDTFACGDET-----GNVSLVNIKNPDSAQ--TSAVH------SQNITGLAY 277 (357)
T ss_dssp SSCBCBC---CCTTCCSCEEEEEECTTSTTEEEEEESS-----SCEEEEESSCGGGCE--EECCC------SSCEEEEEE
T ss_pred Cceeeee---eeccccccccchhhhhcccceEEEeecc-----cceeEEECCCCcEeE--EEecc------ceeEEEEEE
Confidence 6533211 1111111 1223322 35677777643 247888987654211 11111 112233333
Q ss_pred cC-CcEEEEEeccCCCCCceEEEEECCCCC
Q 012184 268 EG-EHHLVAFGGYNGKYNNEVFVMRLKPRD 296 (469)
Q Consensus 268 ~~-~~~l~v~GG~~~~~~~~~~~~d~~~~~ 296 (469)
.+ +..+++.|+.++ .+.+||+.+..
T Consensus 278 sp~~~~~lasgs~D~----~i~iwd~~~~~ 303 (357)
T 4g56_B 278 SYHSSPFLASISEDC----TVAVLDADFSE 303 (357)
T ss_dssp CSSSSCCEEEEETTS----CEEEECTTSCE
T ss_pred cCCCCCEEEEEeCCC----EEEEEECCCCc
Confidence 33 346777777665 37788876553
No 120
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=95.90 E-value=0.93 Score=40.80 Aligned_cols=196 Identities=8% Similarity=0.068 Sum_probs=99.1
Q ss_pred eeeEE--ECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcE
Q 012184 56 HCMVK--WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDV 132 (469)
Q Consensus 56 ~~~~~--~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v 132 (469)
+.++. .++.||+.+... ...+.+||.....-..+.. .... .-+.++.- ++++|+.... .+.+
T Consensus 80 ~~i~~~~~~g~l~v~~~~~-----~~~i~~~d~~g~~~~~~~~---~~~~-~~~~i~~~~~g~l~v~~~~------~~~i 144 (286)
T 1q7f_A 80 NRVAVVRNSGDIIVTERSP-----THQIQIYNQYGQFVRKFGA---TILQ-HPRGVTVDNKGRIIVVECK------VMRV 144 (286)
T ss_dssp EEEEEETTTTEEEEEECGG-----GCEEEEECTTSCEEEEECT---TTCS-CEEEEEECTTSCEEEEETT------TTEE
T ss_pred eEEEEEcCCCeEEEEcCCC-----CCEEEEECCCCcEEEEecC---ccCC-CceEEEEeCCCCEEEEECC------CCEE
Confidence 34444 267898886321 1348999955443333331 1111 11233332 4678876432 3469
Q ss_pred EEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEE
Q 012184 133 HFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI 212 (469)
Q Consensus 133 ~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~ 212 (469)
++||+.......+...+.. ..-..++...++.+|+.... .+.|++||+.......+...+.. .....++
T Consensus 145 ~~~~~~g~~~~~~~~~~~~---~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~g~~~~~~~~~g~~---~~p~~i~ 213 (286)
T 1q7f_A 145 IIFDQNGNVLHKFGCSKHL---EFPNGVVVNDKQEIFISDNR-----AHCVKVFNYEGQYLRQIGGEGIT---NYPIGVG 213 (286)
T ss_dssp EEECTTSCEEEEEECTTTC---SSEEEEEECSSSEEEEEEGG-----GTEEEEEETTCCEEEEESCTTTS---CSEEEEE
T ss_pred EEEcCCCCEEEEeCCCCcc---CCcEEEEECCCCCEEEEECC-----CCEEEEEcCCCCEEEEEccCCcc---CCCcEEE
Confidence 9999876554444321111 11234444446788886542 25799999866544333211111 1122333
Q ss_pred EE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEE
Q 012184 213 TI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMR 291 (469)
Q Consensus 213 ~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d 291 (469)
.. ++.+|+....++ ..+.+||.....-..+... ... .....+.+++++.||+... + +.+.+|+
T Consensus 214 ~d~~G~l~v~~~~~~----~~i~~~~~~g~~~~~~~~~-~~~------~~~~~i~~~~~g~l~vs~~-~----~~v~v~~ 277 (286)
T 1q7f_A 214 INSNGEILIADNHNN----FNLTIFTQDGQLISALESK-VKH------AQCFDVALMDDGSVVLASK-D----YRLYIYR 277 (286)
T ss_dssp ECTTCCEEEEECSSS----CEEEEECTTSCEEEEEEES-SCC------SCEEEEEEETTTEEEEEET-T----TEEEEEE
T ss_pred ECCCCCEEEEeCCCC----EEEEEECCCCCEEEEEccc-CCC------CcceeEEECCCCcEEEECC-C----CeEEEEE
Confidence 32 467888764321 1688999765544433321 111 1122344455668888742 2 4577777
Q ss_pred CC
Q 012184 292 LK 293 (469)
Q Consensus 292 ~~ 293 (469)
+.
T Consensus 278 ~~ 279 (286)
T 1q7f_A 278 YV 279 (286)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 121
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=95.88 E-value=0.95 Score=40.74 Aligned_cols=214 Identities=9% Similarity=-0.051 Sum_probs=111.1
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 94 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~ 94 (469)
.+.+||+. ++...+.... .....++++.. ++.||+.... ...+++||+. +.+..+
T Consensus 42 ~v~~~~~~-~~~~~~~~~~----------------~~~~~~~i~~~~~g~l~v~~~~------~~~v~~~d~~-g~~~~~ 97 (300)
T 2qc5_A 42 KISSLDQS-GRIKEFEVPT----------------PDAKVMCLIVSSLGDIWFTENG------ANKIGKLSKK-GGFTEY 97 (300)
T ss_dssp EEEEECTT-SCEEEEECSS----------------TTCCEEEEEECTTSCEEEEETT------TTEEEEECTT-SCEEEE
T ss_pred eEEEECCC-CceEEEECCC----------------CCCcceeEEECCCCCEEEEecC------CCeEEEECCC-CCeEEe
Confidence 67778877 6665543321 11122333333 5678876421 2348999988 777666
Q ss_pred ecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEec
Q 012184 95 ETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG 173 (469)
Q Consensus 95 ~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG 173 (469)
...+ ....-++++.- ++.+|+.... .+.+++||+. ++........ ....-+.++...++.+|+...
T Consensus 98 ~~~~---~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~~~~~---~~~~~~~i~~d~~g~l~v~~~ 164 (300)
T 2qc5_A 98 PLPQ---PDSGPYGITEGLNGDIWFTQLN------GDRIGKLTAD-GTIYEYDLPN---KGSYPAFITLGSDNALWFTEN 164 (300)
T ss_dssp ECSS---TTCCEEEEEECSTTCEEEEETT------TTEEEEECTT-SCEEEEECSS---TTCCEEEEEECTTSSEEEEET
T ss_pred cCCC---CCCCCccceECCCCCEEEEccC------CCeEEEECCC-CCEEEccCCC---CCCCceeEEECCCCCEEEEec
Confidence 5211 11222333333 4678876421 3458999987 6665443211 112223444444566887543
Q ss_pred CCCCcccCcEEEEECCCCceEeeeecCCCCCC-CcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCC
Q 012184 174 CSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTG-RAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKG 251 (469)
Q Consensus 174 ~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~-r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~ 251 (469)
. .+.+++||+ +++...+.. +.. .....++.. ++.+|+.... .+.+++||+ +..+..... +.
T Consensus 165 ~-----~~~i~~~~~-~g~~~~~~~----~~~~~~~~~i~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~-~~ 227 (300)
T 2qc5_A 165 Q-----NNSIGRITN-TGKLEEYPL----PTNAAAPVGITSGNDGALWFVEIM-----GNKIGRITT-TGEISEYDI-PT 227 (300)
T ss_dssp T-----TTEEEEECT-TCCEEEEEC----SSTTCCEEEEEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEEC-SS
T ss_pred C-----CCeEEEECC-CCcEEEeeC----CCCCCCcceEEECCCCCEEEEccC-----CCEEEEEcC-CCcEEEEEC-CC
Confidence 2 246899998 666665431 111 122233332 4678776431 235889998 555554421 11
Q ss_pred CCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECC
Q 012184 252 RNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK 293 (469)
Q Consensus 252 ~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~ 293 (469)
. ......+..++++.||+.... .+.+.+||++
T Consensus 228 ~------~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~~ 259 (300)
T 2qc5_A 228 P------NARPHAITAGKNSEIWFTEWG----ANQIGRITND 259 (300)
T ss_dssp T------TCCEEEEEECSTTCEEEEETT----TTEEEEECTT
T ss_pred C------CCCceEEEECCCCCEEEeccC----CCeEEEECCC
Confidence 1 112234455555667776532 2358888873
No 122
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=95.84 E-value=1.1 Score=41.02 Aligned_cols=189 Identities=12% Similarity=0.062 Sum_probs=91.9
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
++.+++.|+.+ ..+.+||+.++.-...-. + ....-.++.+ ++.+++.|+.+. .+.++|+.+
T Consensus 66 ~~~~l~s~s~d------~~i~vwd~~~~~~~~~~~-~----h~~~v~~~~~~~~~~~l~sgs~D~------~v~lWd~~~ 128 (304)
T 2ynn_A 66 RKNWIIVGSDD------FRIRVFNYNTGEKVVDFE-A----HPDYIRSIAVHPTKPYVLSGSDDL------TVKLWNWEN 128 (304)
T ss_dssp GGTEEEEEETT------SEEEEEETTTCCEEEEEE-C----CSSCEEEEEECSSSSEEEEEETTS------CEEEEEGGG
T ss_pred CCCEEEEECCC------CEEEEEECCCCcEEEEEe-C----CCCcEEEEEEcCCCCEEEEECCCC------eEEEEECCC
Confidence 55566666643 238889988876332210 1 1111222223 345666666543 378888876
Q ss_pred CeEEEeeeCCCCCCCCCCceEEEEc--CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE---
Q 012184 140 MTWDAVEVTQTPPAPRYDHSAALHA--NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--- 214 (469)
Q Consensus 140 ~~W~~~~~~g~~p~~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--- 214 (469)
..-......+. .. .-..+.+. ++.+++.|+.+ ..+.++|+.+..-...... ...+....+...
T Consensus 129 ~~~~~~~~~~h---~~-~v~~v~~~p~~~~~l~sgs~D-----~~v~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~ 196 (304)
T 2ynn_A 129 NWALEQTFEGH---EH-FVMCVAFNPKDPSTFASGCLD-----RTVKVWSLGQSTPNFTLTT---GQERGVNYVDYYPLP 196 (304)
T ss_dssp TTEEEEEECCC---CS-CEEEEEECTTCTTEEEEEETT-----SEEEEEETTCSSCSEEEEC---CCTTCEEEEEECCST
T ss_pred Ccchhhhhccc---CC-cEEEEEECCCCCCEEEEEeCC-----CeEEEEECCCCCccceecc---CCcCcEEEEEEEEcC
Confidence 52111111111 11 11223332 44577777765 3578888765432111100 111111122221
Q ss_pred CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184 215 DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP 294 (469)
Q Consensus 215 ~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~ 294 (469)
++.+++.|+.+ ..+.++|+.+..-. ..+.+.. ..+..+...++..+++.|+.++. +.+||+.+
T Consensus 197 ~~~~l~s~s~D-----~~i~iWd~~~~~~~--~~~~~h~------~~v~~~~~~p~~~~l~s~s~Dg~----i~iWd~~~ 259 (304)
T 2ynn_A 197 DKPYMITASDD-----LTIKIWDYQTKSCV--ATLEGHM------SNVSFAVFHPTLPIIISGSEDGT----LKIWNSST 259 (304)
T ss_dssp TCCEEEEEETT-----SEEEEEETTTTEEE--EEEECCS------SCEEEEEECSSSSEEEEEETTSC----EEEEETTT
T ss_pred CCCEEEEEcCC-----CeEEEEeCCCCccc--eeeCCCC------CCEEEEEECCCCCEEEEEcCCCe----EEEEECCC
Confidence 34566666643 35788898776432 2222221 12333445555667788887664 77888765
Q ss_pred CC
Q 012184 295 RD 296 (469)
Q Consensus 295 ~~ 296 (469)
..
T Consensus 260 ~~ 261 (304)
T 2ynn_A 260 YK 261 (304)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 123
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=95.84 E-value=0.22 Score=47.38 Aligned_cols=117 Identities=12% Similarity=-0.034 Sum_probs=55.9
Q ss_pred CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCC-CCC-CCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCC
Q 012184 113 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQ-TPP-APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT 190 (469)
Q Consensus 113 ~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g-~~p-~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~ 190 (469)
++ +++.|+.+ ..+.+||+.+......-... ..+ ....-.++....++.+++.|+.+. ....+.+||+.+
T Consensus 197 ~~-~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~--~~g~i~i~d~~~ 267 (397)
T 1sq9_A 197 RG-LIATGFNN------GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN--SFGCITLYETEF 267 (397)
T ss_dssp TS-EEEEECTT------SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET--TEEEEEEEETTT
T ss_pred Cc-eEEEEeCC------CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC--CCceEEEEECCC
Confidence 35 66666543 34899999887654332110 000 011122333333555666666431 114689999877
Q ss_pred CceEeeeecCCCC---------CCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcE
Q 012184 191 NEWSQPEIKGDLV---------TGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAW 243 (469)
Q Consensus 191 ~~W~~~~~~~~~p---------~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W 243 (469)
.+-...-.....+ ....-.+++.. ++.+++.|+.+ ..+.+||+.+..-
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 325 (397)
T 1sq9_A 268 GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD-----GKLRFWDVKTKER 325 (397)
T ss_dssp CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTTEE
T ss_pred CcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC-----CeEEEEEcCCCce
Confidence 6532211010000 11111222322 45666776642 3688999877653
No 124
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.79 E-value=0.85 Score=43.07 Aligned_cols=151 Identities=9% Similarity=-0.021 Sum_probs=75.9
Q ss_pred cCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEc-CcE-EEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCC
Q 012184 129 LNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA-NRY-LIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGR 206 (469)
Q Consensus 129 ~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~~-l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r 206 (469)
...++++|+.++....+... ........... ++. |++............++++|+.+..+..+.. ..+.
T Consensus 167 ~~~l~~~d~~~g~~~~~~~~-----~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~ 237 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIHQD-----TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE----HAEG 237 (396)
T ss_dssp CEEEEEEETTTCCEEEEEEE-----SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC----CCTT
T ss_pred cceEEEEECCCCcEEeeccC-----CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec----cCCC
Confidence 45799999999887766521 11112222222 343 4443321111122579999998877766531 1111
Q ss_pred cce-EEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccC----
Q 012184 207 AGH-AGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN---- 280 (469)
Q Consensus 207 ~~~-~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~---- 280 (469)
... ..+.. +++.+++...........++++|+.+.....+...+ ++. ..+... ++.++++.+..
T Consensus 238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--------~~~-~~~s~~-dg~~l~~~~~~~p~~ 307 (396)
T 3c5m_A 238 ESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP--------PCS-HLMSNF-DGSLMVGDGCDAPVD 307 (396)
T ss_dssp EEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC--------SEE-EEEECS-SSSEEEEEECCC---
T ss_pred ccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC--------CCC-CCccCC-CCceEEEecCCccee
Confidence 111 22222 444444433222222234999999888776664332 122 233330 23355554321
Q ss_pred --------CCCCceEEEEECCCCCCC
Q 012184 281 --------GKYNNEVFVMRLKPRDIP 298 (469)
Q Consensus 281 --------~~~~~~~~~~d~~~~~w~ 298 (469)
......++++|+.+....
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~~~~~ 333 (396)
T 3c5m_A 308 VADADSYNIENDPFLYVLNTKAKSAQ 333 (396)
T ss_dssp -------CCCCCCEEEEEETTTTBCC
T ss_pred eccccccccCCCCcEEEEecccCceE
Confidence 123467999999876654
No 125
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.65 Score=43.15 Aligned_cols=196 Identities=8% Similarity=-0.022 Sum_probs=95.8
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
++.+++.|+.++ .+.+||+.++.-...- .. ......++.+ ++.+++.|+.+ ..+.+||+.+
T Consensus 43 ~~~~l~~~~~dg------~i~vwd~~~~~~~~~~---~~--h~~~v~~~~~~~~~~~l~s~~~d------g~i~iwd~~~ 105 (369)
T 3zwl_B 43 EGDLLFSCSKDS------SASVWYSLNGERLGTL---DG--HTGTIWSIDVDCFTKYCVTGSAD------YSIKLWDVSN 105 (369)
T ss_dssp TSCEEEEEESSS------CEEEEETTTCCEEEEE---CC--CSSCEEEEEECTTSSEEEEEETT------TEEEEEETTT
T ss_pred CCCEEEEEeCCC------EEEEEeCCCchhhhhh---hh--cCCcEEEEEEcCCCCEEEEEeCC------CeEEEEECCC
Confidence 556666666432 3889998887644332 11 1112222333 35566666543 3589999988
Q ss_pred CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc----eEeeeecC----CCCCCCcceEE
Q 012184 140 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE----WSQPEIKG----DLVTGRAGHAG 211 (469)
Q Consensus 140 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~----W~~~~~~~----~~p~~r~~~~~ 211 (469)
.+...... .+..-.++....++..++.++.+.......+.+||+.+.. +....... ...........
T Consensus 106 ~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3zwl_B 106 GQCVATWK-----SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180 (369)
T ss_dssp CCEEEEEE-----CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred CcEEEEee-----cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence 87654432 1111223333335556666654422233567888875442 11111000 00001002222
Q ss_pred EEE--CCEEEEEecCCCCCCcceEEEEECCC-CcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEE
Q 012184 212 ITI--DENWYIVGGGDNNNGCQETIVLNMTK-LAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVF 288 (469)
Q Consensus 212 ~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~-~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~ 288 (469)
+.+ ++..+++|+.+ ..+.+||+.+ ..-... +... ...+..+...+++.+++.|+.++ .+.
T Consensus 181 ~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~--~~~~------~~~v~~~~~~~~~~~l~~~~~d~----~i~ 243 (369)
T 3zwl_B 181 AGWSTKGKYIIAGHKD-----GKISKYDVSNNYEYVDS--IDLH------EKSISDMQFSPDLTYFITSSRDT----NSF 243 (369)
T ss_dssp EEECGGGCEEEEEETT-----SEEEEEETTTTTEEEEE--EECC------SSCEEEEEECTTSSEEEEEETTS----EEE
T ss_pred EEEcCCCCEEEEEcCC-----CEEEEEECCCCcEeEEE--EecC------CCceeEEEECCCCCEEEEecCCc----eEE
Confidence 222 34566666642 3688999987 332221 1111 11233344445556667776544 578
Q ss_pred EEECCCCC
Q 012184 289 VMRLKPRD 296 (469)
Q Consensus 289 ~~d~~~~~ 296 (469)
+||+.+..
T Consensus 244 v~d~~~~~ 251 (369)
T 3zwl_B 244 LVDVSTLQ 251 (369)
T ss_dssp EEETTTCC
T ss_pred EEECCCCc
Confidence 88886543
No 126
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=95.77 E-value=1.2 Score=40.96 Aligned_cols=224 Identities=9% Similarity=0.012 Sum_probs=109.5
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeE-EE
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLC-GV 93 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W-~~ 93 (469)
.+..||+.+++....-..+. .-. ..+..- +..||+.+... ..++.+|+.++.. ..
T Consensus 21 ~v~~~d~~~~~~~~~~~~~~----------------~~~-~~~~s~dg~~l~~~~~~~------~~i~~~d~~~~~~~~~ 77 (331)
T 3u4y_A 21 RISFFSTDTLEILNQITLGY----------------DFV-DTAITSDCSNVVVTSDFC------QTLVQIETQLEPPKVV 77 (331)
T ss_dssp EEEEEETTTCCEEEEEECCC----------------CEE-EEEECSSSCEEEEEESTT------CEEEEEECSSSSCEEE
T ss_pred eEEEEeCcccceeeeEEccC----------------Ccc-eEEEcCCCCEEEEEeCCC------CeEEEEECCCCceeEE
Confidence 78999999988865544321 111 122222 44577765422 2599999998875 33
Q ss_pred eecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCc-EEEE
Q 012184 94 METSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANR-YLIV 170 (469)
Q Consensus 94 ~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-~l~v 170 (469)
....+..| .++++.. +..|| .+.... ....+++||+.+++.......+.. .+.++...++ ++|+
T Consensus 78 ~~~~~~~~----~~~~~~s~dg~~l~-~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~-----~~~~~~spdg~~l~~ 144 (331)
T 3u4y_A 78 AIQEGQSS----MADVDITPDDQFAV-TVTGLN---HPFNMQSYSFLKNKFISTIPIPYD-----AVGIAISPNGNGLIL 144 (331)
T ss_dssp EEEECSSC----CCCEEECTTSSEEE-ECCCSS---SSCEEEEEETTTTEEEEEEECCTT-----EEEEEECTTSSCEEE
T ss_pred ecccCCCC----ccceEECCCCCEEE-EecCCC---CcccEEEEECCCCCeEEEEECCCC-----ccceEECCCCCEEEE
Confidence 22221111 1212222 33566 332211 122699999999887554432221 1344444444 5777
Q ss_pred EecCCCCcccCc-EEEEECCCCc-eEeeeecCCCCCCCcceEEEEE-CC-EEEEEecCCCCCCcceEEEEECCCCcE-EE
Q 012184 171 FGGCSHSIFFND-LHVLDLQTNE-WSQPEIKGDLVTGRAGHAGITI-DE-NWYIVGGGDNNNGCQETIVLNMTKLAW-SI 245 (469)
Q Consensus 171 ~GG~~~~~~~~~-i~~~d~~~~~-W~~~~~~~~~p~~r~~~~~~~~-~~-~l~v~GG~~~~~~~~d~~~~d~~~~~W-~~ 245 (469)
.+..+ +. +.+|++.... ....... ..+.......++.. ++ .+|+.+.. .+.+.+||+.+... ..
T Consensus 145 ~~~~~-----~~~i~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~~~~-----~~~v~v~d~~~~~~~~~ 213 (331)
T 3u4y_A 145 IDRSS-----ANTVRRFKIDADGVLFDTGQE-FISGGTRPFNITFTPDGNFAFVANLI-----GNSIGILETQNPENITL 213 (331)
T ss_dssp EEETT-----TTEEEEEEECTTCCEEEEEEE-EECSSSSEEEEEECTTSSEEEEEETT-----TTEEEEEECSSTTSCEE
T ss_pred EecCC-----CceEEEEEECCCCcEeecCCc-cccCCCCccceEECCCCCEEEEEeCC-----CCeEEEEECCCCcccce
Confidence 65432 35 7777765432 1111000 01112222333333 34 46666542 24689999987664 11
Q ss_pred eccCCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECCCCCC
Q 012184 246 LTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLKPRDI 297 (469)
Q Consensus 246 ~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~~~~w 297 (469)
+..++... .... +.+.+ +.++|+.... .+.++++|+.+...
T Consensus 214 ~~~~~~~~----~~~~---~~~spdg~~l~v~~~~----~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 214 LNAVGTNN----LPGT---IVVSRDGSTVYVLTES----TVDVFNFNQLSGTL 255 (331)
T ss_dssp EEEEECSS----CCCC---EEECTTSSEEEEECSS----EEEEEEEETTTTEE
T ss_pred eeeccCCC----CCce---EEECCCCCEEEEEEcC----CCEEEEEECCCCce
Confidence 11121111 0111 22333 3456665442 33588899877655
No 127
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.75 E-value=0.34 Score=45.92 Aligned_cols=202 Identities=8% Similarity=-0.019 Sum_probs=97.3
Q ss_pred cceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCE-EEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCC
Q 012184 78 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSR-LIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP 154 (469)
Q Consensus 78 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~-lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~ 154 (469)
...++.+|+.++....+... + ... ...... ++. |++... .........++++|+.+..+..+.. ..+
T Consensus 167 ~~~l~~~d~~~g~~~~~~~~---~-~~~-~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~----~~~ 236 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIHQD---T-AWL-GHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKE----HAE 236 (396)
T ss_dssp CEEEEEEETTTCCEEEEEEE---S-SCE-EEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSC----CCT
T ss_pred cceEEEEECCCCcEEeeccC---C-ccc-ccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeec----cCC
Confidence 34789999999887776521 1 111 122222 244 544432 2211123579999998887766542 111
Q ss_pred CCCceEEEE-cCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCC------
Q 012184 155 RYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDN------ 226 (469)
Q Consensus 155 r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~------ 226 (469)
........+ .++..+++...........++++|+.++....+.. .+. .. .+..- +++++++.+.+.
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~---~~~--~~-~~~s~~dg~~l~~~~~~~p~~~~~ 310 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV---MPP--CS-HLMSNFDGSLMVGDGCDAPVDVAD 310 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE---CCS--EE-EEEECSSSSEEEEEECCC------
T ss_pred CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee---CCC--CC-CCccCCCCceEEEecCCcceeecc
Confidence 111111222 24443333332222212349999998887766542 121 11 22222 566666654321
Q ss_pred -----CCCcceEEEEECCCCcEEEeccCCCCCC---CCCC-CcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCC
Q 012184 227 -----NNGCQETIVLNMTKLAWSILTSVKGRNP---LASE-GLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI 297 (469)
Q Consensus 227 -----~~~~~d~~~~d~~~~~W~~~~~~~~~~p---~~r~-~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w 297 (469)
......++++|+.+.....+........ ..+. ......+..+ +.+|+......+ ...+|.+++....+
T Consensus 311 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~d-g~~l~~~s~~~~--~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 311 ADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPN-DDGVLFTSDFEG--VPAIYIADVPESYK 387 (396)
T ss_dssp ----CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTT-SSEEEEEECTTS--SCEEEEEECCTTCC
T ss_pred ccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccC-CCeEEEEecCCC--CceEEEEEEccccc
Confidence 1123579999998877665543221100 0000 0111122222 334544443332 45799999877665
Q ss_pred C
Q 012184 298 P 298 (469)
Q Consensus 298 ~ 298 (469)
.
T Consensus 388 ~ 388 (396)
T 3c5m_A 388 H 388 (396)
T ss_dssp -
T ss_pred c
Confidence 4
No 128
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=95.73 E-value=1.1 Score=46.49 Aligned_cols=150 Identities=9% Similarity=-0.025 Sum_probs=77.9
Q ss_pred cceEEEEECCCCeE--EEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCC
Q 012184 78 SMIVRFIDLETNLC--GVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA 153 (469)
Q Consensus 78 ~~~~~~~d~~t~~W--~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~ 153 (469)
...++.+++.+..- ..+. ..+........+.+ +++.++++..... ..++++++|..+..|..+....
T Consensus 201 ~~~v~~~~l~t~~~~~~lv~---~~~~~~~~~~~~~~SpDG~~l~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~~---- 271 (695)
T 2bkl_A 201 YTTIRYHTLGTEPSKDTVVH---ERTGDPTTFLQSDLSRDGKYLFVYILRGW--SENDVYWKRPGEKDFRLLVKGV---- 271 (695)
T ss_dssp GCEEEEEETTSCGGGCEEEE---CCCCCTTCEEEEEECTTSCCEEEEEEETT--TEEEEEEECTTCSSCEEEEECS----
T ss_pred CCEEEEEECCCCchhceEEE---ecCCCCEEEEEEEECCCCCEEEEEEeCCC--CceEEEEEcCCCCceEEeecCC----
Confidence 34599999988763 2222 11211112222223 3443344332221 3567999988778888876321
Q ss_pred CCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc---eEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCc
Q 012184 154 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE---WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGC 230 (469)
Q Consensus 154 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~---W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~ 230 (469)
. .....+...++ +|+....+ .....++++|+.+.. |..+.. ..+ ...-..+...++.+++....++ .
T Consensus 272 ~-~~~~~~~~~g~-l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~--~~~-~~~l~~~~~~~~~lv~~~~~dg---~ 341 (695)
T 2bkl_A 272 G-AKYEVHAWKDR-FYVLTDEG--APRQRVFEVDPAKPARASWKEIVP--EDS-SASLLSVSIVGGHLSLEYLKDA---T 341 (695)
T ss_dssp S-CCEEEEEETTE-EEEEECTT--CTTCEEEEEBTTBCSGGGCEEEEC--CCS-SCEEEEEEEETTEEEEEEEETT---E
T ss_pred C-ceEEEEecCCc-EEEEECCC--CCCCEEEEEeCCCCCccCCeEEec--CCC-CCeEEEEEEECCEEEEEEEECC---E
Confidence 1 11222223344 66654432 223679999987754 877642 111 1122233444788877755322 4
Q ss_pred ceEEEEECCCCcEEEe
Q 012184 231 QETIVLNMTKLAWSIL 246 (469)
Q Consensus 231 ~d~~~~d~~~~~W~~~ 246 (469)
..+|.+|+....-..+
T Consensus 342 ~~l~~~~~~g~~~~~l 357 (695)
T 2bkl_A 342 SEVRVATLKGKPVRTV 357 (695)
T ss_dssp EEEEEEETTCCEEEEC
T ss_pred EEEEEEeCCCCeeEEe
Confidence 5789999765443433
No 129
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=95.72 E-value=1.5 Score=41.78 Aligned_cols=201 Identities=9% Similarity=0.017 Sum_probs=95.6
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecC--CCCCCCCcceEEEEE--CC-EEEEEeccCCCCCccCcEEEEE
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETS--GKVPVARGGHSVTLV--GS-RLIIFGGEDRSRKLLNDVHFLD 136 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~--g~~p~~r~~~~~~~~--~~-~lyi~GG~~~~~~~~~~v~~~d 136 (469)
++.+++.|+.++ .+.+||+.++........ ..+........++.+ ++ .+++.|+.+ ..+.+||
T Consensus 93 ~~~~l~s~s~dg------~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d------g~i~iwd 160 (402)
T 2aq5_A 93 NDNVIASGSEDC------TVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD------NVILVWD 160 (402)
T ss_dssp CTTEEEEEETTS------EEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT------SCEEEEE
T ss_pred CCCEEEEEeCCC------eEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC------CEEEEEE
Confidence 566777776432 388888887643110000 000001111222333 22 467677654 3489999
Q ss_pred CCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-C
Q 012184 137 LETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-D 215 (469)
Q Consensus 137 ~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~ 215 (469)
+.+......-.. ......-.++....++.+++.|+.+ ..+.+||+.+..-...... .....+. ..++.. +
T Consensus 161 ~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~-~~~~~~~-~~~~~~~~ 231 (402)
T 2aq5_A 161 VGTGAAVLTLGP--DVHPDTIYSVDWSRDGALICTSCRD-----KRVRVIEPRKGTVVAEKDR-PHEGTRP-VHAVFVSE 231 (402)
T ss_dssp TTTTEEEEEECT--TTCCSCEEEEEECTTSSCEEEEETT-----SEEEEEETTTTEEEEEEEC-SSCSSSC-CEEEECST
T ss_pred CCCCCccEEEec--CCCCCceEEEEECCCCCEEEEEecC-----CcEEEEeCCCCceeeeecc-CCCCCcc-eEEEEcCC
Confidence 998876543210 0111112233333355567777644 4689999987764332101 1111112 223333 5
Q ss_pred CEEEEEecCCCCCCcceEEEEECCCCcE-EEeccCCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECC
Q 012184 216 ENWYIVGGGDNNNGCQETIVLNMTKLAW-SILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLK 293 (469)
Q Consensus 216 ~~l~v~GG~~~~~~~~d~~~~d~~~~~W-~~~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~ 293 (469)
+.+++.|... .....+.+||+.+..- ......... .....+...+ +..|++.|+.++ .+.+||+.
T Consensus 232 ~~~l~~g~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~~~g~~dg----~i~i~d~~ 298 (402)
T 2aq5_A 232 GKILTTGFSR--MSERQVALWDTKHLEEPLSLQELDTS-------SGVLLPFFDPDTNIVYLCGKGDS----SIRYFEIT 298 (402)
T ss_dssp TEEEEEEECT--TCCEEEEEEETTBCSSCSEEEECCCC-------SSCEEEEEETTTTEEEEEETTCS----CEEEEEEC
T ss_pred CcEEEEeccC--CCCceEEEEcCccccCCceEEeccCC-------CceeEEEEcCCCCEEEEEEcCCC----eEEEEEec
Confidence 6676666211 1134688999876431 011111111 1122223333 456667776554 47777776
Q ss_pred CCC
Q 012184 294 PRD 296 (469)
Q Consensus 294 ~~~ 296 (469)
+..
T Consensus 299 ~~~ 301 (402)
T 2aq5_A 299 SEA 301 (402)
T ss_dssp SST
T ss_pred CCC
Confidence 554
No 130
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.70 E-value=2.4 Score=43.93 Aligned_cols=124 Identities=15% Similarity=0.086 Sum_probs=69.7
Q ss_pred eeeEEECCEEEEEccccCCCCCcceEEEEECCCCe--EEEeecCCCC-----CCCCcceEEEEECCEEEEEeccCCCCCc
Q 012184 56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKV-----PVARGGHSVTLVGSRLIIFGGEDRSRKL 128 (469)
Q Consensus 56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~-----p~~r~~~~~~~~~~~lyi~GG~~~~~~~ 128 (469)
.+-++.++.||+.... ..++.+|..|++ |+.-...... .......+.++.+++||+...
T Consensus 60 ~~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------- 125 (668)
T 1kv9_A 60 ATPLFHDGVIYTSMSW-------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL------- 125 (668)
T ss_dssp CCCEEETTEEEEEEGG-------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------
T ss_pred cCCEEECCEEEEECCC-------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-------
Confidence 3445679999998642 349999998886 8864321000 000112234556788876431
Q ss_pred cCcEEEEECCCCe--EEEeeeCCCCCCC-CCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc--eEee
Q 012184 129 LNDVHFLDLETMT--WDAVEVTQTPPAP-RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQP 196 (469)
Q Consensus 129 ~~~v~~~d~~t~~--W~~~~~~g~~p~~-r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~ 196 (469)
...++.+|..|++ |+.... ..+.. ....+.++. ++.+|+..+.........++.||+.+++ |..-
T Consensus 126 dg~l~alD~~tG~~~W~~~~~--~~~~~~~~~~~P~v~-~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 126 DGRLIALDAKTGKAIWSQQTT--DPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp TSEEEEEETTTCCEEEEEECS--CTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEECCCCCEeeeeccC--CCCCcceecCCCEEE-CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 3459999998875 876431 11111 111222333 6666663322111233579999998876 8764
No 131
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.69 E-value=0.068 Score=58.28 Aligned_cols=16 Identities=13% Similarity=0.457 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 012184 429 IENEVQILRQQKSAFE 444 (469)
Q Consensus 429 ~e~e~~~~~q~~~~~~ 444 (469)
|++|.+.++|++..++
T Consensus 1028 L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1028 LKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444333
No 132
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=95.69 E-value=0.23 Score=46.99 Aligned_cols=202 Identities=10% Similarity=0.057 Sum_probs=85.7
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEE-E-CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-V-GSRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~-~-~~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
++.+++.|+..........++.|+..++.-...... .......+..++. . ++.++ .++.+ ..|.+||+.+
T Consensus 53 DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~-~~~~~~~~V~~~~~s~d~~~l-~~s~d------g~v~lWd~~~ 124 (357)
T 4g56_B 53 DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT-AGVQTEAGVTDVAWVSEKGIL-VASDS------GAVELWEILE 124 (357)
T ss_dssp SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCS-EEEECSSCEEEEEEETTTEEE-EEETT------SCEEEC----
T ss_pred CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEec-ccCCCCCCEEEEEEcCCCCEE-EEECC------CEEEEeeccc
Confidence 677778777543322234577777655431100000 0000111122222 2 34554 45433 2488888876
Q ss_pred CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCE
Q 012184 140 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DEN 217 (469)
Q Consensus 140 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~ 217 (469)
++-..............-.++....++..++.|+.+ ..|.++|+.+.+-...- ..... .-.+++.. ++.
T Consensus 125 ~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d-----g~v~iwd~~~~~~~~~~---~~h~~-~v~~v~~s~~~~~ 195 (357)
T 4g56_B 125 KESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD-----FSVKVWDLSQKAVLKSY---NAHSS-EVNCVAACPGKDT 195 (357)
T ss_dssp ----CCCCEEECCCSSCEEEEEECSSSSEEEEEETT-----SCEEEEETTTTEEEEEE---CCCSS-CEEEEEECTTCSS
T ss_pred cceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC-----CeEEEEECCCCcEEEEE---cCCCC-CEEEEEEccCCCc
Confidence 643221100000001111222333356677777755 35889998877644321 11111 11122222 234
Q ss_pred EEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECCCC
Q 012184 218 WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 218 l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~~~ 295 (469)
+++.+|.++ .+.+||+.+..-....... ........+...+ +..+++.|+.++ .+.+||+.+.
T Consensus 196 ~~~s~~~dg-----~v~~wd~~~~~~~~~~~~~------~~~~~v~~v~~sp~~~~~la~g~~d~----~i~~wd~~~~ 259 (357)
T 4g56_B 196 IFLSCGEDG-----RILLWDTRKPKPATRIDFC------ASDTIPTSVTWHPEKDDTFACGDETG----NVSLVNIKNP 259 (357)
T ss_dssp CEEEEETTS-----CEEECCTTSSSCBCBCCCT------TCCSCEEEEEECTTSTTEEEEEESSS----CEEEEESSCG
T ss_pred eeeeeccCC-----ceEEEECCCCceeeeeeec------cccccccchhhhhcccceEEEeeccc----ceeEEECCCC
Confidence 677776432 4677887765422111110 0111222333333 456777887655 3778887654
No 133
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.67 E-value=0.27 Score=41.27 Aligned_cols=30 Identities=17% Similarity=0.169 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 012184 392 SKELSSVQGQLVAERSRCFKLEAQIAELQK 421 (469)
Q Consensus 392 ~~el~~~~~~l~~~~~~~~~~~~~~~e~~~ 421 (469)
+.++..++.....++.++.++++..-++++
T Consensus 94 q~el~~l~~~~~~l~~~ireLEq~NDdlEr 123 (189)
T 2v71_A 94 EDDLSQTRAIKEQLHKYVRELEQANDDLER 123 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 333333333333444444444443333333
No 134
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.64 E-value=2.3 Score=43.36 Aligned_cols=125 Identities=13% Similarity=0.059 Sum_probs=67.4
Q ss_pred eeeEEECCEEEEEccccCCCCCcceEEEEEC-CCCe--EEEeecCCC--CCCC---CcceEEEE--ECCE----EEEEec
Q 012184 56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDL-ETNL--CGVMETSGK--VPVA---RGGHSVTL--VGSR----LIIFGG 121 (469)
Q Consensus 56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~-~t~~--W~~~~~~g~--~p~~---r~~~~~~~--~~~~----lyi~GG 121 (469)
.+-++.++.||+.+.. ...++.||. .|++ |+.-..... .+.. ....+.++ .++. ||+...
T Consensus 56 ~tP~v~~g~vyv~~~~------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~ 129 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSF------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL 129 (599)
T ss_dssp SCCEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT
T ss_pred eccEEECCEEEEEeCC------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC
Confidence 3446679999998652 224999999 7876 887542110 0000 11123344 4666 766421
Q ss_pred cCCCCCccCcEEEEECCCCe--EEEeeeCCCCCCC-CCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc--eEee
Q 012184 122 EDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAP-RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQP 196 (469)
Q Consensus 122 ~~~~~~~~~~v~~~d~~t~~--W~~~~~~g~~p~~-r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~ 196 (469)
...++.+|..|++ |+.-.. ..... ....+-++. ++.+|+-.+.........++.||..+++ |..-
T Consensus 130 -------dg~l~AlDa~TG~~~W~~~~~--~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 130 -------DGNVAALNAETGETVWKVENS--DIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp -------TSEEEEEETTTCCEEEEEECC--CGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred -------CCEEEEEECCCCCEEEeecCC--CCCccceeecCCEEE-CCEEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence 2359999998875 875421 11000 111122334 6666653321111123579999998876 8764
No 135
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=95.63 E-value=1.6 Score=41.42 Aligned_cols=191 Identities=10% Similarity=0.011 Sum_probs=94.3
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCC-----------CCcceEEEEECCEEEEEeccCCCCCccC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPV-----------ARGGHSVTLVGSRLIIFGGEDRSRKLLN 130 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~-----------~r~~~~~~~~~~~lyi~GG~~~~~~~~~ 130 (469)
++..++.|+.++ .+..||+.++...........+. ...-..++...+..++.|+.+ .
T Consensus 160 ~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g 227 (425)
T 1r5m_A 160 DGTHIISMDVEN------VTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK------G 227 (425)
T ss_dssp TSSEEEEEETTC------CEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGG------G
T ss_pred CCCEEEEEecCC------eEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC------C
Confidence 455555665432 28899998887554432111110 000222222333445666543 3
Q ss_pred cEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceE
Q 012184 131 DVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHA 210 (469)
Q Consensus 131 ~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~ 210 (469)
.+.+||+.+..-..... . ....-.++....++.+++.|+.+ ..+.+||+.+....... . .....-.+
T Consensus 228 ~i~~~d~~~~~~~~~~~--~--~~~~i~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~---~-~~~~~i~~ 294 (425)
T 1r5m_A 228 AIFVYQITEKTPTGKLI--G--HHGPISVLEFNDTNKLLLSASDD-----GTLRIWHGGNGNSQNCF---Y-GHSQSIVS 294 (425)
T ss_dssp CEEEEETTCSSCSEEEC--C--CSSCEEEEEEETTTTEEEEEETT-----SCEEEECSSSBSCSEEE---C-CCSSCEEE
T ss_pred eEEEEEcCCCceeeeec--c--CCCceEEEEECCCCCEEEEEcCC-----CEEEEEECCCCccceEe---c-CCCccEEE
Confidence 58999988764322110 0 11112233333455566666644 35888998765433221 1 11112233
Q ss_pred EEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEE
Q 012184 211 GITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVM 290 (469)
Q Consensus 211 ~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~ 290 (469)
++...+.+++.|+.+ ..+.+||+.+..-.... ... ...+..+...+++.++++|+.++ .+.+|
T Consensus 295 ~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~--~~~------~~~i~~~~~s~~~~~l~~~~~dg----~i~i~ 357 (425)
T 1r5m_A 295 ASWVGDDKVISCSMD-----GSVRLWSLKQNTLLALS--IVD------GVPIFAGRISQDGQKYAVAFMDG----QVNVY 357 (425)
T ss_dssp EEEETTTEEEEEETT-----SEEEEEETTTTEEEEEE--ECT------TCCEEEEEECTTSSEEEEEETTS----CEEEE
T ss_pred EEECCCCEEEEEeCC-----CcEEEEECCCCcEeEec--ccC------CccEEEEEEcCCCCEEEEEECCC----eEEEE
Confidence 444433366666643 36889998776533221 111 11233444455566777777654 47788
Q ss_pred ECCC
Q 012184 291 RLKP 294 (469)
Q Consensus 291 d~~~ 294 (469)
|+.+
T Consensus 358 ~~~~ 361 (425)
T 1r5m_A 358 DLKK 361 (425)
T ss_dssp ECHH
T ss_pred ECCC
Confidence 8754
No 136
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=95.61 E-value=1.5 Score=41.20 Aligned_cols=210 Identities=10% Similarity=-0.006 Sum_probs=94.6
Q ss_pred cceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCC
Q 012184 78 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY 156 (469)
Q Consensus 78 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~ 156 (469)
...++.+|+.++.-..+... + ....+....- +++.+++............++.+|+.+.....+.. ......
T Consensus 167 ~~~l~~~d~~~g~~~~l~~~---~-~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~ 239 (388)
T 3pe7_A 167 CCRLMRVDLKTGESTVILQE---N-QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKT---HAEGES 239 (388)
T ss_dssp CEEEEEEETTTCCEEEEEEE---S-SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCC---CCTTEE
T ss_pred cceEEEEECCCCceEEeecC---C-ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeee---CCCCcc
Confidence 36799999999987666521 1 1222222222 34444443322222235679999998877665542 111111
Q ss_pred CceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCC---CCCcceEEEEECCEEEEEec---CCCCCCc
Q 012184 157 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLV---TGRAGHAGITIDENWYIVGG---GDNNNGC 230 (469)
Q Consensus 157 ~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p---~~r~~~~~~~~~~~l~v~GG---~~~~~~~ 230 (469)
........|++.+++...........++++|+.+++-..+....... ......+...-+..|++... .......
T Consensus 240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 319 (388)
T 3pe7_A 240 CTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEND 319 (388)
T ss_dssp EEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCC
T ss_pred cccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCC
Confidence 11122222443333322221111124999999988766554211100 00011112222333333210 0011224
Q ss_pred ceEEEEECCCCcEEEeccCCCCCCC---CCC-CcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCC
Q 012184 231 QETIVLNMTKLAWSILTSVKGRNPL---ASE-GLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI 297 (469)
Q Consensus 231 ~d~~~~d~~~~~W~~~~~~~~~~p~---~r~-~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w 297 (469)
..++++|+.+..-..+......... .+. ......+..+ +.+|+.....++ ...+|.+++....|
T Consensus 320 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spD-g~~l~~~s~~~g--~~~l~~~~l~~~~~ 387 (388)
T 3pe7_A 320 PFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPD-DKQILFTSDVHG--KPALYLATLPESVW 387 (388)
T ss_dssp CEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTT-SSEEEEEECTTS--SCEEEEEECCGGGG
T ss_pred CEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCC-CCEEEEEecCCC--ceeEEEEECChhcc
Confidence 5799999998887766543321100 000 0111223222 234554443333 45799999876655
No 137
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=95.58 E-value=1.1 Score=42.86 Aligned_cols=152 Identities=16% Similarity=0.063 Sum_probs=76.8
Q ss_pred EEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCe
Q 012184 64 KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMT 141 (469)
Q Consensus 64 ~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~ 141 (469)
.+++.|+.++ .+..||+.++.....-. .........++.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 145 ~~l~s~~~dg------~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~ 209 (402)
T 2aq5_A 145 NVLLSAGCDN------VILVWDVGTGAAVLTLG---PDVHPDTIYSVDWSRDGALICTSCRD------KRVRVIEPRKGT 209 (402)
T ss_dssp TEEEEEETTS------CEEEEETTTTEEEEEEC---TTTCCSCEEEEEECTTSSCEEEEETT------SEEEEEETTTTE
T ss_pred CEEEEEcCCC------EEEEEECCCCCccEEEe---cCCCCCceEEEEECCCCCEEEEEecC------CcEEEEeCCCCc
Confidence 5777776542 28999999887554331 0111112223333 45666666643 359999999877
Q ss_pred EEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCce-EeeeecCCCCCCCcceEEEEE-C-CEE
Q 012184 142 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW-SQPEIKGDLVTGRAGHAGITI-D-ENW 218 (469)
Q Consensus 142 W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W-~~~~~~~~~p~~r~~~~~~~~-~-~~l 218 (469)
-......+ ........++...++.+++.|.... ....+.+||+.+..- .... .........+++.. + ..+
T Consensus 210 ~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~~~--~d~~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l 282 (402)
T 2aq5_A 210 VVAEKDRP--HEGTRPVHAVFVSEGKILTTGFSRM--SERQVALWDTKHLEEPLSLQ---ELDTSSGVLLPFFDPDTNIV 282 (402)
T ss_dssp EEEEEECS--SCSSSCCEEEECSTTEEEEEEECTT--CCEEEEEEETTBCSSCSEEE---ECCCCSSCEEEEEETTTTEE
T ss_pred eeeeeccC--CCCCcceEEEEcCCCcEEEEeccCC--CCceEEEEcCccccCCceEE---eccCCCceeEEEEcCCCCEE
Confidence 54332111 1111123344445777777763111 125688999876442 1111 11111112233333 3 345
Q ss_pred EEEecCCCCCCcceEEEEECCCCc
Q 012184 219 YIVGGGDNNNGCQETIVLNMTKLA 242 (469)
Q Consensus 219 ~v~GG~~~~~~~~d~~~~d~~~~~ 242 (469)
++.|+.+ ..+.+||+.+..
T Consensus 283 ~~~g~~d-----g~i~i~d~~~~~ 301 (402)
T 2aq5_A 283 YLCGKGD-----SSIRYFEITSEA 301 (402)
T ss_dssp EEEETTC-----SCEEEEEECSST
T ss_pred EEEEcCC-----CeEEEEEecCCC
Confidence 5666533 257788887665
No 138
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=95.56 E-value=1.5 Score=40.65 Aligned_cols=195 Identities=14% Similarity=0.106 Sum_probs=91.4
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCC--CeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEEC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLET--NLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDL 137 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t--~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~ 137 (469)
++..++.|+.+. .+..+|+.. ..+..+... ........++.+ ++.+++.|+.+. .+.++|.
T Consensus 118 ~g~~las~s~D~------~v~iwd~~~~~~~~~~~~~~---~~h~~~v~~v~~~p~~~~l~s~s~D~------~i~iW~~ 182 (330)
T 2hes_X 118 DGYYLATCSRDK------SVWIWETDESGEEYECISVL---QEHSQDVKHVIWHPSEALLASSSYDD------TVRIWKD 182 (330)
T ss_dssp TSCEEEEEETTS------CEEEEECCTTCCCCEEEEEE---CCCSSCEEEEEECSSSSEEEEEETTS------CEEEEEE
T ss_pred CCCEEEEEeCCC------EEEEEeccCCCCCeEEEEEe---ccCCCceEEEEECCCCCEEEEEcCCC------eEEEEEC
Confidence 566666766443 278888743 234433311 111112223333 355667776543 3778888
Q ss_pred CCCeEEEeeeCCCCCCCCCCceEEEEcC--cEEEEEecCCCCcccCcEEEEECCC------CceEeeeecCCCCCCCcce
Q 012184 138 ETMTWDAVEVTQTPPAPRYDHSAALHAN--RYLIVFGGCSHSIFFNDLHVLDLQT------NEWSQPEIKGDLVTGRAGH 209 (469)
Q Consensus 138 ~t~~W~~~~~~g~~p~~r~~~~~~~~~~--~~l~v~GG~~~~~~~~~i~~~d~~~------~~W~~~~~~~~~p~~r~~~ 209 (469)
.+..|..+........+ -.++....+ +..++.|+.+. .+.++|+.+ ..|..+..... .....-.
T Consensus 183 ~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~~l~s~s~D~-----~v~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~ 254 (330)
T 2hes_X 183 YDDDWECVAVLNGHEGT--VWSSDFDKTEGVFRLCSGSDDS-----TVRVWKYMGDDEDDQQEWVCEAILPD-VHKRQVY 254 (330)
T ss_dssp ETTEEEEEEEECCCSSC--EEEEEECCSSSSCEEEEEETTS-----CEEEEEEEEECTTSCEEEEEEEECCS-CCSSCEE
T ss_pred CCCCeeEEEEccCCCCc--EEEEEecCCCCeeEEEEEeCCC-----eEEEEEecCCCccccceeEEeeeccc-ccccceE
Confidence 77777665432111111 112222222 44566666543 355565532 23544432111 1112222
Q ss_pred EEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCC-CCCCCCCCCcceEEEEEcC--CcEEEEEeccCCCCCce
Q 012184 210 AGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVK-GRNPLASEGLSVCSAIIEG--EHHLVAFGGYNGKYNNE 286 (469)
Q Consensus 210 ~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~-~~~p~~r~~~s~~~~~~~~--~~~l~v~GG~~~~~~~~ 286 (469)
+++...+.+++.||.++ .+.+||..+..|..+.... ... .+.+..+...+ ++.+++.||.++ .
T Consensus 255 ~v~~s~~~~l~s~~~dg-----~v~iw~~~~~~~~~~~~~~~~h~-----~~~v~~v~~~~~~~~~~las~s~Dg----~ 320 (330)
T 2hes_X 255 NVAWGFNGLIASVGADG-----VLAVYEEVDGEWKVFAKRALCHG-----VYEINVVKWLELNGKTILATGGDDG----I 320 (330)
T ss_dssp EEEECTTSCEEEEETTS-----CEEEEEEETTEEEEEEEESCTTT-----TSCEEEEEEC-----CCEEEEETTS----E
T ss_pred EEEEcCCCEEEEEeCCC-----EEEEEEcCCCceEEEeccccccc-----cceEEEEEEecCCCceEEEEecCCC----c
Confidence 33333455666776432 4677888888886543321 111 11222222222 356778888765 3
Q ss_pred EEEEECC
Q 012184 287 VFVMRLK 293 (469)
Q Consensus 287 ~~~~d~~ 293 (469)
+.++|+.
T Consensus 321 v~~W~~~ 327 (330)
T 2hes_X 321 VNFWSLE 327 (330)
T ss_dssp EEEEEC-
T ss_pred EEEEEec
Confidence 6667654
No 139
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.66 Score=44.20 Aligned_cols=197 Identities=13% Similarity=0.076 Sum_probs=94.3
Q ss_pred CEEEEEccccCCCCCcceEEEEECCCCe------EEEeecCCCCCCCCcceEEEEE--C-CEEEEEeccCCCCCccCcEE
Q 012184 63 TKLLILGGHYKKSSDSMIVRFIDLETNL------CGVMETSGKVPVARGGHSVTLV--G-SRLIIFGGEDRSRKLLNDVH 133 (469)
Q Consensus 63 ~~iy~~GG~~~~~~~~~~~~~~d~~t~~------W~~~~~~g~~p~~r~~~~~~~~--~-~~lyi~GG~~~~~~~~~~v~ 133 (469)
+.+++.|+.++ .+..||+.+.. -.... ...........++.+ + +.+++.|+.+ ..+.
T Consensus 126 ~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~ 191 (416)
T 2pm9_A 126 DNVLASGGNNG------EIFIWDMNKCTESPSNYTPLTP--GQSMSSVDEVISLAWNQSLAHVFASAGSS------NFAS 191 (416)
T ss_dssp TTBEEEECSSS------CEEBCBTTTTSSCTTTCCCBCC--CCSCCSSCCCCEEEECSSCTTEEEEESSS------SCEE
T ss_pred CCEEEEEcCCC------eEEEEECCCCcccccccccccc--ccccCCCCCeeEEEeCCCCCcEEEEEcCC------CCEE
Confidence 66777776432 28888887764 11110 001111111222233 2 4677777654 3489
Q ss_pred EEECCCCeEEEeeeCCCCCCC-CCCceEEEEc-Cc-EEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCC--CCCcc
Q 012184 134 FLDLETMTWDAVEVTQTPPAP-RYDHSAALHA-NR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLV--TGRAG 208 (469)
Q Consensus 134 ~~d~~t~~W~~~~~~g~~p~~-r~~~~~~~~~-~~-~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p--~~r~~ 208 (469)
+||+.+............... ......+.+. ++ .+++.|+.+.. ...+.+||+.+..-... ... ....-
T Consensus 192 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~~~~~~~~~----~~~~~~~~~v 265 (416)
T 2pm9_A 192 IWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN--DPSILIWDLRNANTPLQ----TLNQGHQKGI 265 (416)
T ss_dssp EEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS--SCCCCEEETTSTTSCSB----CCCSCCSSCE
T ss_pred EEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC--CceEEEEeCCCCCCCcE----EeecCccCce
Confidence 999998875443311100000 1222233332 32 46666665431 12688899876531111 111 11112
Q ss_pred eEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCc-EEEEEeccCCCCCc
Q 012184 209 HAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEH-HLVAFGGYNGKYNN 285 (469)
Q Consensus 209 ~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~-~l~v~GG~~~~~~~ 285 (469)
.+++.. ++.+++.|+.+ ..+.+||+.+..-.. .+.... ..+..+...+++ .+++.|+.++
T Consensus 266 ~~~~~s~~~~~~l~s~~~d-----g~v~~wd~~~~~~~~--~~~~~~------~~v~~~~~s~~~~~~l~s~~~d~---- 328 (416)
T 2pm9_A 266 LSLDWCHQDEHLLLSSGRD-----NTVLLWNPESAEQLS--QFPARG------NWCFKTKFAPEAPDLFACASFDN---- 328 (416)
T ss_dssp EEEEECSSCSSCEEEEESS-----SEEEEECSSSCCEEE--EEECSS------SCCCCEEECTTCTTEEEECCSSS----
T ss_pred eEEEeCCCCCCeEEEEeCC-----CCEEEeeCCCCccce--eecCCC------CceEEEEECCCCCCEEEEEecCC----
Confidence 223332 45677777743 358888987765332 111111 011122233343 6778887655
Q ss_pred eEEEEECCCCC
Q 012184 286 EVFVMRLKPRD 296 (469)
Q Consensus 286 ~~~~~d~~~~~ 296 (469)
.+.+||+....
T Consensus 329 ~i~iw~~~~~~ 339 (416)
T 2pm9_A 329 KIEVQTLQNLT 339 (416)
T ss_dssp EEEEEESCCCC
T ss_pred cEEEEEccCCC
Confidence 47888886543
No 140
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=95.54 E-value=0.38 Score=45.32 Aligned_cols=147 Identities=7% Similarity=0.001 Sum_probs=73.7
Q ss_pred CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEE-c-CcEEEEEecCCCCcccCcEEEEECCC
Q 012184 113 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-A-NRYLIVFGGCSHSIFFNDLHVLDLQT 190 (469)
Q Consensus 113 ~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~-~~~l~v~GG~~~~~~~~~i~~~d~~~ 190 (469)
++.+++.|+.+. .|.++|+.+++-...- .+ ....-..+.+ . +..+++.|+.+ +.+.++|+.+
T Consensus 138 dg~~l~sgs~d~------~i~iwd~~~~~~~~~~-~~----h~~~V~~~~~~~~~~~~l~s~s~D-----~~v~iwd~~~ 201 (344)
T 4gqb_B 138 SGTQAVSGSKDI------CIKVWDLAQQVVLSSY-RA----HAAQVTCVAASPHKDSVFLSCSED-----NRILLWDTRC 201 (344)
T ss_dssp TSSEEEEEETTS------CEEEEETTTTEEEEEE-CC----CSSCEEEEEECSSCTTEEEEEETT-----SCEEEEETTS
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEE-cC----cCCceEEEEecCCCCCceeeeccc-----cccccccccc
Confidence 456777776543 3889999988654322 11 1111122222 2 33477777655 3588899887
Q ss_pred CceEeeeecCCCCCCCc-ceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEE
Q 012184 191 NEWSQPEIKGDLVTGRA-GHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAII 267 (469)
Q Consensus 191 ~~W~~~~~~~~~p~~r~-~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~ 267 (469)
.+-...- ....... ..+++.. ++.+++.|+.+ ..+.+||+.+.+- +..+.+.. ..+..+..
T Consensus 202 ~~~~~~~---~~~~~~~~~~~~~~~p~~~~~l~sg~~d-----g~v~~wd~~~~~~--~~~~~~h~------~~v~~v~f 265 (344)
T 4gqb_B 202 PKPASQI---GCSAPGYLPTSLAWHPQQSEVFVFGDEN-----GTVSLVDTKSTSC--VLSSAVHS------QCVTGLVF 265 (344)
T ss_dssp SSCEEEC---C----CCCEEEEEECSSCTTEEEEEETT-----SEEEEEESCC--C--CEEEECCS------SCEEEEEE
T ss_pred cceeeee---ecceeeccceeeeecCCCCcceEEeccC-----CcEEEEECCCCcE--EEEEcCCC------CCEEEEEE
Confidence 6543311 1111111 1122322 45677777743 2577888876532 11111111 12233344
Q ss_pred cCC-cEEEEEeccCCCCCceEEEEECCCC
Q 012184 268 EGE-HHLVAFGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 268 ~~~-~~l~v~GG~~~~~~~~~~~~d~~~~ 295 (469)
.++ ..+++.|+.++. +.+||..+.
T Consensus 266 sp~g~~~lasgs~D~~----i~vwd~~~~ 290 (344)
T 4gqb_B 266 SPHSVPFLASLSEDCS----LAVLDSSLS 290 (344)
T ss_dssp CSSSSCCEEEEETTSC----EEEECTTCC
T ss_pred ccCCCeEEEEEeCCCe----EEEEECCCC
Confidence 443 367777876653 777887654
No 141
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=95.54 E-value=1.7 Score=41.22 Aligned_cols=200 Identities=11% Similarity=0.049 Sum_probs=92.5
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCC--eEEEeecCCCCCCCCcceEEEEE---CCEEEEEeccCCCCCccCcEEEEE
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETN--LCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLD 136 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~--~W~~~~~~g~~p~~r~~~~~~~~---~~~lyi~GG~~~~~~~~~~v~~~d 136 (469)
++.+++.|+.++ .+..||+.+. ....+.. .........++.+ ++.+++.|+.+. .+.+||
T Consensus 78 ~~~~l~~~~~dg------~v~vw~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~l~s~~~dg------~v~iwd 142 (416)
T 2pm9_A 78 NNKIIAGALDNG------SLELYSTNEANNAINSMAR---FSNHSSSVKTVKFNAKQDNVLASGGNNG------EIFIWD 142 (416)
T ss_dssp SSSCEEEEESSS------CEEEECCSSTTSCCCEEEE---CCCSSSCCCEEEECSSSTTBEEEECSSS------CEEBCB
T ss_pred CCCeEEEEccCC------eEEEeecccccccccchhh---ccCCccceEEEEEcCCCCCEEEEEcCCC------eEEEEE
Confidence 555666666432 2788888761 1112211 1111111222233 256777776442 488888
Q ss_pred CCCCe------EEEeeeCCCCC-CCCCCceEEEEcC-cEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCC--CC
Q 012184 137 LETMT------WDAVEVTQTPP-APRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVT--GR 206 (469)
Q Consensus 137 ~~t~~------W~~~~~~g~~p-~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~--~r 206 (469)
+.+.. -.. .. .... ....-.++....+ +.+++.|+.+ ..+.+||+.+..-........... ..
T Consensus 143 ~~~~~~~~~~~~~~-~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~ 215 (416)
T 2pm9_A 143 MNKCTESPSNYTPL-TP-GQSMSSVDEVISLAWNQSLAHVFASAGSS-----NFASIWDLKAKKEVIHLSYTSPNSGIKQ 215 (416)
T ss_dssp TTTTSSCTTTCCCB-CC-CCSCCSSCCCCEEEECSSCTTEEEEESSS-----SCEEEEETTTTEEEEEECCCCCSSCCCC
T ss_pred CCCCcccccccccc-cc-ccccCCCCCeeEEEeCCCCCcEEEEEcCC-----CCEEEEECCCCCcceEEeccccccccCC
Confidence 87764 111 00 0111 1111223333333 4577777654 458999998876543221100000 11
Q ss_pred cceEEEEEC--CEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCC
Q 012184 207 AGHAGITID--ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKY 283 (469)
Q Consensus 207 ~~~~~~~~~--~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~ 283 (469)
.-.+++... ..+++.|+.++. ...+.+||+.+..- .+..+.. .....+..+...+ ++.+++.|+.++
T Consensus 216 ~v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~~~~~~-~~~~~~~-----~~~~~v~~~~~s~~~~~~l~s~~~dg-- 285 (416)
T 2pm9_A 216 QLSVVEWHPKNSTRVATATGSDN--DPSILIWDLRNANT-PLQTLNQ-----GHQKGILSLDWCHQDEHLLLSSGRDN-- 285 (416)
T ss_dssp CEEEEEECSSCTTEEEEEECCSS--SCCCCEEETTSTTS-CSBCCCS-----CCSSCEEEEEECSSCSSCEEEEESSS--
T ss_pred ceEEEEECCCCCCEEEEEECCCC--CceEEEEeCCCCCC-CcEEeec-----CccCceeEEEeCCCCCCeEEEEeCCC--
Confidence 222333332 257777765431 12567888876421 1111110 0112233344444 556777777654
Q ss_pred CceEEEEECCCC
Q 012184 284 NNEVFVMRLKPR 295 (469)
Q Consensus 284 ~~~~~~~d~~~~ 295 (469)
.+.+||+.+.
T Consensus 286 --~v~~wd~~~~ 295 (416)
T 2pm9_A 286 --TVLLWNPESA 295 (416)
T ss_dssp --EEEEECSSSC
T ss_pred --CEEEeeCCCC
Confidence 4777777654
No 142
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=95.51 E-value=0.49 Score=47.72 Aligned_cols=201 Identities=10% Similarity=0.013 Sum_probs=95.7
Q ss_pred ceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCC
Q 012184 79 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY 156 (469)
Q Consensus 79 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~ 156 (469)
..++.+|..+..-..+.. .+..+.-+.++.- ++ ++|+.+. ..+.|.++|+.+++-...-..+..|.+-.
T Consensus 302 g~i~vvd~~~~~~l~~~~---i~~~~~~~~~~~spdg~~l~va~~------~~~~v~v~D~~tg~l~~~i~~g~~ph~g~ 372 (543)
T 1nir_A 302 GKVLLVNYKDIDNLTVTS---IGAAPFLHDGGWDSSHRYFMTAAN------NSNKVAVIDSKDRRLSALVDVGKTPHPGR 372 (543)
T ss_dssp TEEEEEECTTSSSCEEEE---EECCSSCCCEEECTTSCEEEEEEG------GGTEEEEEETTTTEEEEEEECSSSBCCTT
T ss_pred CeEEEEEecCCCcceeEE---eccCcCccCceECCCCCEEEEEec------CCCeEEEEECCCCeEEEeeccCCCCCCCC
Confidence 458999987754211111 1112222222222 34 4554432 24568999999998766554455554433
Q ss_pred CceEEEEcC-cEEEEEecCCCCcccCcEEEEECCCC-----ceEeeeecCCCCCCCcceEEEEE-C-CEEEEEecCCCC-
Q 012184 157 DHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTN-----EWSQPEIKGDLVTGRAGHAGITI-D-ENWYIVGGGDNN- 227 (469)
Q Consensus 157 ~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~-----~W~~~~~~~~~p~~r~~~~~~~~-~-~~l~v~GG~~~~- 227 (469)
+... ...+ +.+|+.+..+. +.|-++|..+. .|..+........+ .. .+... + ..||+-.-.+..
T Consensus 373 g~~~-~~p~~g~~~~s~~~~d----~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~-~~-~v~~~pdg~~l~v~~~~~~~~ 445 (543)
T 1nir_A 373 GANF-VHPKYGPVWSTSHLGD----GSISLIGTDPKNHPQYAWKKVAELQGQGGG-SL-FIKTHPKSSHLYVDTTFNPDA 445 (543)
T ss_dssp CEEE-EETTTEEEEEEEBSSS----SEEEEEECCTTTCTTTBTSEEEEEECSCSC-CC-CEECCTTCCEEEECCTTCSSH
T ss_pred Cccc-CCCCCccEEEeccCCC----ceEEEEEeCCCCCchhcCeEEEEEEcCCCC-ce-EEEcCCCCCcEEEecCCCCCc
Confidence 3332 2333 67887764322 46888888762 27766532111111 11 12222 3 345543211111
Q ss_pred CCcceEEEEECCCCcEE--Eecc--CCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECCCCCCC
Q 012184 228 NGCQETIVLNMTKLAWS--ILTS--VKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLKPRDIP 298 (469)
Q Consensus 228 ~~~~d~~~~d~~~~~W~--~~~~--~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~~~~w~ 298 (469)
.....+.+||+.+..-. .++. ..+. +. .+.....+.+++ +..+++.-+......+.+.++|..+..-.
T Consensus 446 ~~~~~v~v~d~~~~~~~~~~~~v~~~~~~-~~--~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 446 RISQSVAVFDLKNLDAKYQVLPIAEWADL-GE--GAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp HHHTCEEEEETTCTTSCCEEECHHHHHCC-CS--SCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred ccCceEEEEECCCCCCCeEEeechhhccc-CC--CCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 01457999999876632 2110 0000 00 122333344444 44555442111123567999998776543
No 143
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.51 E-value=0.058 Score=58.83 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 012184 437 RQQKSAFEQEM 447 (469)
Q Consensus 437 ~q~~~~~~~~~ 447 (469)
.++++.+++++
T Consensus 1029 ~~e~~~L~qq~ 1039 (1080)
T 2dfs_A 1029 KEQNTLLKTEK 1039 (1080)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=95.49 E-value=1.5 Score=40.15 Aligned_cols=143 Identities=18% Similarity=0.114 Sum_probs=68.8
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEE-E-CCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK-W-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 93 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~ 93 (469)
.+..+|+.+++-...-..+.. . .+ .+.++. - ++.+|+.++. ...++.+|+.+++-..
T Consensus 12 ~v~~~d~~~~~~~~~~~~~~~-------------~-~~-~~~~~~s~dg~~l~v~~~~------~~~v~~~d~~~~~~~~ 70 (337)
T 1pby_B 12 KLVVIDTEKMAVDKVITIADA-------------G-PT-PMVPMVAPGGRIAYATVNK------SESLVKIDLVTGETLG 70 (337)
T ss_dssp EEEEEETTTTEEEEEEECTTC-------------T-TC-CCCEEECTTSSEEEEEETT------TTEEEEEETTTCCEEE
T ss_pred eEEEEECCCCcEEEEEEcCCC-------------C-CC-ccceEEcCCCCEEEEEeCC------CCeEEEEECCCCCeEe
Confidence 789999988765443332110 0 01 122222 2 4467777542 2349999999887544
Q ss_pred eecCCCCCC--CCcceEEEEE-CC-EEEEEecc---CCCCC--ccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEc
Q 012184 94 METSGKVPV--ARGGHSVTLV-GS-RLIIFGGE---DRSRK--LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA 164 (469)
Q Consensus 94 ~~~~g~~p~--~r~~~~~~~~-~~-~lyi~GG~---~~~~~--~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~ 164 (469)
....+. +. ...-+.++.. ++ .||+.... ..... ..+.+++||+.+.+.......+.. .+.++...
T Consensus 71 ~~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~-----~~~~~~s~ 144 (337)
T 1pby_B 71 RIDLST-PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ-----ITMLAWAR 144 (337)
T ss_dssp EEECCB-TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS-----CCCEEECT
T ss_pred eEEcCC-cccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC-----cceeEECC
Confidence 321111 00 0011122222 33 66665321 11110 136799999998876544322221 12233322
Q ss_pred Cc-EEEEEecCCCCcccCcEEEEECCCCce
Q 012184 165 NR-YLIVFGGCSHSIFFNDLHVLDLQTNEW 193 (469)
Q Consensus 165 ~~-~l~v~GG~~~~~~~~~i~~~d~~~~~W 193 (469)
++ +||+.+ +.++++|+.+.+-
T Consensus 145 dg~~l~~~~--------~~i~~~d~~~~~~ 166 (337)
T 1pby_B 145 DGSKLYGLG--------RDLHVMDPEAGTL 166 (337)
T ss_dssp TSSCEEEES--------SSEEEEETTTTEE
T ss_pred CCCEEEEeC--------CeEEEEECCCCcE
Confidence 33 355541 3567777666543
No 145
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=95.47 E-value=0.86 Score=41.59 Aligned_cols=195 Identities=9% Similarity=-0.088 Sum_probs=97.8
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETM 140 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~ 140 (469)
++.||+..-. ...+++||+.++....+.. + .... +++.. ++.+|+.. .+.+++||+.++
T Consensus 24 ~~~l~~~d~~------~~~i~~~d~~~~~~~~~~~----~-~~~~-~i~~~~dG~l~v~~--------~~~l~~~d~~~g 83 (297)
T 3g4e_A 24 SNSLLFVDIP------AKKVCRWDSFTKQVQRVTM----D-APVS-SVALRQSGGYVATI--------GTKFCALNWKEQ 83 (297)
T ss_dssp TTEEEEEETT------TTEEEEEETTTCCEEEEEC----S-SCEE-EEEEBTTSSEEEEE--------TTEEEEEETTTT
T ss_pred CCEEEEEECC------CCEEEEEECCCCcEEEEeC----C-CceE-EEEECCCCCEEEEE--------CCeEEEEECCCC
Confidence 5788887542 2349999999887655542 1 1111 22222 45666542 245999999999
Q ss_pred eEEEeeeCCCCCCCCC-CceEEEEcCcEEEEEecCCC------CcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEE
Q 012184 141 TWDAVEVTQTPPAPRY-DHSAALHANRYLIVFGGCSH------SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT 213 (469)
Q Consensus 141 ~W~~~~~~g~~p~~r~-~~~~~~~~~~~l~v~GG~~~------~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~ 213 (469)
+++.+...... .+.. ...++...++.+|+..-... ......+|++++.. ....+.. .. .....++.
T Consensus 84 ~~~~~~~~~~~-~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~--~~---~~pngi~~ 156 (297)
T 3g4e_A 84 SAVVLATVDND-KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFD--QV---DISNGLDW 156 (297)
T ss_dssp EEEEEEECCTT-CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEE--EE---SBEEEEEE
T ss_pred cEEEEEecCCC-CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEee--cc---ccccceEE
Confidence 98877542111 1111 12233334666776321111 01234688888753 3333221 11 11123333
Q ss_pred E--CCEEEEEecCCCCCCcceEEEEEC--CCCcEEE---eccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCce
Q 012184 214 I--DENWYIVGGGDNNNGCQETIVLNM--TKLAWSI---LTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNE 286 (469)
Q Consensus 214 ~--~~~l~v~GG~~~~~~~~d~~~~d~--~~~~W~~---~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~ 286 (469)
. +..+|+.... .+.+++||+ .+..... +..++.. ......++++.++.|++..... ..
T Consensus 157 spdg~~lyv~~~~-----~~~i~~~~~d~~~G~~~~~~~~~~~~~~------~~~p~g~~~d~~G~lwva~~~~----~~ 221 (297)
T 3g4e_A 157 SLDHKIFYYIDSL-----SYSVDAFDYDLQTGQISNRRSVYKLEKE------EQIPDGMCIDAEGKLWVACYNG----GR 221 (297)
T ss_dssp CTTSCEEEEEEGG-----GTEEEEEEECTTTCCEEEEEEEEECCGG------GCEEEEEEEBTTSCEEEEEETT----TE
T ss_pred cCCCCEEEEecCC-----CCcEEEEeccCCCCcccCcEEEEECCCC------CCCCCeeEECCCCCEEEEEcCC----CE
Confidence 3 2357777542 246888876 4444321 1111110 0112234455566777764322 25
Q ss_pred EEEEECCCCCCC
Q 012184 287 VFVMRLKPRDIP 298 (469)
Q Consensus 287 ~~~~d~~~~~w~ 298 (469)
+++||+.+....
T Consensus 222 v~~~d~~tG~~~ 233 (297)
T 3g4e_A 222 VIRLDPVTGKRL 233 (297)
T ss_dssp EEEECTTTCCEE
T ss_pred EEEEcCCCceEE
Confidence 899999765543
No 146
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=95.47 E-value=0.18 Score=38.07 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=30.9
Q ss_pred hhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHH
Q 012184 375 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAF 443 (469)
Q Consensus 375 ~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~----~~e~e~~~~~q~~~~~ 443 (469)
..++.++...+....+++.++..++..++.++......+..+.+.+.++...+ +-|.++.-+.+.++.+
T Consensus 26 e~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 26 EQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555555555444444444444444443333332 2333444444444433
No 147
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=95.41 E-value=0.48 Score=35.98 Aligned_cols=83 Identities=18% Similarity=0.232 Sum_probs=52.6
Q ss_pred hhhhhhhHhhhhhhh----cchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHH
Q 012184 371 RTENSRFREKIDEVN----STHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE----SSQTIENEVQILRQQKSA 442 (469)
Q Consensus 371 ~~~~~~l~~~~~~~~----~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~----~~~~~e~e~~~~~q~~~~ 442 (469)
..+...++.++.... ..+..+++++..++.....++.++.++++...+++++.. ..+.++..+.+.-....=
T Consensus 16 ~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnal 95 (111)
T 2v66_B 16 KYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAF 95 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 334444444444433 345667777777777777778888888887777776643 344666677666666667
Q ss_pred HHHHHHHhhhh
Q 012184 443 FEQEMERATSV 453 (469)
Q Consensus 443 ~~~~~~~~~~~ 453 (469)
++.++++-..+
T Consensus 96 LE~El~EKe~L 106 (111)
T 2v66_B 96 LESELDEKESL 106 (111)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777643333
No 148
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=95.41 E-value=1.8 Score=40.61 Aligned_cols=166 Identities=12% Similarity=0.047 Sum_probs=84.3
Q ss_pred eEEEEECCCCeEEEeecCCCCCCCCcceEEEEE----CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCC
Q 012184 80 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLV----GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR 155 (469)
Q Consensus 80 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~----~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r 155 (469)
.+..+|+.++.-...-. + ... ...++.+ ++.+++.|+.+. .+.+||+.+.+....-. + ...
T Consensus 177 ~v~lwd~~~~~~~~~~~-~--h~~--~v~~~~~~~~~~g~~l~sgs~Dg------~v~~wd~~~~~~~~~~~-~---h~~ 241 (354)
T 2pbi_B 177 TCALWDVESGQLLQSFH-G--HGA--DVLCLDLAPSETGNTFVSGGCDK------KAMVWDMRSGQCVQAFE-T---HES 241 (354)
T ss_dssp EEEEEETTTCCEEEEEE-C--CSS--CEEEEEECCCSSCCEEEEEETTS------CEEEEETTTCCEEEEEC-C---CSS
T ss_pred cEEEEeCCCCeEEEEEc-C--CCC--CeEEEEEEeCCCCCEEEEEeCCC------eEEEEECCCCcEEEEec-C---CCC
Confidence 48888988876433221 1 111 1112222 246777777543 48899998887544321 1 111
Q ss_pred CCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceE
Q 012184 156 YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQET 233 (469)
Q Consensus 156 ~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~ 233 (469)
.-.++....++.+++.|+.+ ..+.+||+.+..-..+. ...........+.+ ++.+++.|+.+ ..+
T Consensus 242 ~v~~v~~~p~~~~l~s~s~D-----~~v~lwd~~~~~~~~~~---~~~~~~~~~~~~~~s~~g~~l~~g~~d-----~~i 308 (354)
T 2pbi_B 242 DVNSVRYYPSGDAFASGSDD-----ATCRLYDLRADREVAIY---SKESIIFGASSVDFSLSGRLLFAGYND-----YTI 308 (354)
T ss_dssp CEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEE---CCTTCCSCEEEEEECTTSSEEEEEETT-----SCE
T ss_pred CeEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCcEEEEE---cCCCcccceeEEEEeCCCCEEEEEECC-----CcE
Confidence 11222333355577777755 35788998776533222 11111222223333 46677777643 257
Q ss_pred EEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCC
Q 012184 234 IVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG 281 (469)
Q Consensus 234 ~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~ 281 (469)
.+||+.+..-. ..+.+.. ..+..+...+++.+++.|+.++
T Consensus 309 ~vwd~~~~~~~--~~l~~h~------~~v~~l~~spdg~~l~sgs~D~ 348 (354)
T 2pbi_B 309 NVWDVLKGSRV--SILFGHE------NRVSTLRVSPDGTAFCSGSWDH 348 (354)
T ss_dssp EEEETTTCSEE--EEECCCS------SCEEEEEECTTSSCEEEEETTS
T ss_pred EEEECCCCceE--EEEECCC------CcEEEEEECCCCCEEEEEcCCC
Confidence 88998665422 2222111 1233444455667778888665
No 149
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.40 E-value=1.5 Score=44.47 Aligned_cols=112 Identities=12% Similarity=0.079 Sum_probs=60.2
Q ss_pred ceEEEEc-cCC--ceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe--
Q 012184 16 VVMVFDL-RSL--AWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL-- 90 (469)
Q Consensus 16 ~~~~~d~-~~~--~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~-- 90 (469)
.++.||. .++ .|+.-...... .. +.+.......+.++.++.||+... ...++.+|..|++
T Consensus 74 ~v~AlD~~~tG~~~W~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~v~v~~~-------dg~l~alD~~tG~~~ 138 (571)
T 2ad6_A 74 NTYALNLNDPGKIVWQHKPKQDAS------TK--AVMCCDVVDRGLAYGAGQIVKKQA-------NGHLLALDAKTGKIN 138 (571)
T ss_dssp CEEEEETTCTTSEEEEECCCCCGG------GG--GGCTTCSCCCCCEEETTEEEEECT-------TSEEEEEETTTCCEE
T ss_pred EEEEEeCCCCccEEEEEcCCCCcc------cc--ccccccccccccEEECCEEEEEeC-------CCEEEEEECCCCCEE
Confidence 6999999 776 48765432100 00 000000112345667899988743 1349999999885
Q ss_pred EEEeecCCCCCCC-CcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEe
Q 012184 91 CGVMETSGKVPVA-RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAV 145 (469)
Q Consensus 91 W~~~~~~g~~p~~-r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~ 145 (469)
|+.-.. ..+.. ....+.++.++.+|+-.+... ......++.||+.|++ |+.-
T Consensus 139 W~~~~~--~~~~~~~~~~~P~v~~g~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 139 WEVEVC--DPKVGSTLTQAPFVAKDTVLMGCSGAE-LGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp EEEECC--CGGGTCBCCSCCEEETTEEEEECBCGG-GTCCCEEEEEETTTCCEEEEEE
T ss_pred EEecCC--CCCccceeccCCEEECCEEEEEecCCc-cCCCCEEEEEECCCCcEEEEEc
Confidence 875431 11111 112233446788776433211 1124569999998764 7654
No 150
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.35 E-value=1.7 Score=45.70 Aligned_cols=149 Identities=14% Similarity=0.062 Sum_probs=71.6
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCC-eEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETN-LCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLE 138 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~-~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~ 138 (469)
++..++.|+.+ ..+..||+.++ ....... + ... .-.+++.. ++.+++.|+.+ ..+.+||+.
T Consensus 108 ~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~-~--~~~-~v~~~~~~p~~~~~l~~~~~d------g~v~vwd~~ 171 (814)
T 3mkq_A 108 TKPYVLSGSDD------LTVKLWNWENNWALEQTFE-G--HEH-FVMCVAFNPKDPSTFASGCLD------RTVKVWSLG 171 (814)
T ss_dssp SSSEEEEEETT------SEEEEEEGGGTSEEEEEEE-C--CSS-CEEEEEEETTEEEEEEEEETT------SEEEEEETT
T ss_pred CCCEEEEEcCC------CEEEEEECCCCceEEEEEc-C--CCC-cEEEEEEEcCCCCEEEEEeCC------CeEEEEECC
Confidence 44455555532 23888888776 3333221 1 111 11222222 34577776644 348889987
Q ss_pred CCeEEEeeeCCCCCCCCCCceEEEEc--CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-C
Q 012184 139 TMTWDAVEVTQTPPAPRYDHSAALHA--NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-D 215 (469)
Q Consensus 139 t~~W~~~~~~g~~p~~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~ 215 (469)
+..-...... . .......+.... ++.+++.|+.+ ..+.+||+.+..-...- .+ .. ..-.+++.. +
T Consensus 172 ~~~~~~~~~~-~--~~~~v~~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~-~~--~~-~~v~~~~~~~~ 239 (814)
T 3mkq_A 172 QSTPNFTLTT-G--QERGVNYVDYYPLPDKPYMITASDD-----LTIKIWDYQTKSCVATL-EG--HM-SNVSFAVFHPT 239 (814)
T ss_dssp CSSCSEEEEC-C--CTTCCCEEEECCSTTCCEEEEECTT-----SEEEEEETTTTEEEEEE-EC--CS-SCEEEEEECSS
T ss_pred CCcceeEEec-C--CCCCEEEEEEEECCCCCEEEEEeCC-----CEEEEEECCCCcEEEEE-cC--CC-CCEEEEEEcCC
Confidence 6543222111 1 111222233322 55566766644 35889998776533211 11 11 111122222 4
Q ss_pred CEEEEEecCCCCCCcceEEEEECCCCcE
Q 012184 216 ENWYIVGGGDNNNGCQETIVLNMTKLAW 243 (469)
Q Consensus 216 ~~l~v~GG~~~~~~~~d~~~~d~~~~~W 243 (469)
+.+++.|+.+ ..+.+||+.+..-
T Consensus 240 ~~~l~~~~~d-----g~v~vwd~~~~~~ 262 (814)
T 3mkq_A 240 LPIIISGSED-----GTLKIWNSSTYKV 262 (814)
T ss_dssp SSEEEEEETT-----SCEEEEETTTCSE
T ss_pred CCEEEEEeCC-----CeEEEEECCCCcE
Confidence 4567777643 2477888876543
No 151
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=95.35 E-value=1.4 Score=39.06 Aligned_cols=193 Identities=9% Similarity=-0.014 Sum_probs=96.2
Q ss_pred eeeEEE-CCEEEE-EccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcE
Q 012184 56 HCMVKW-GTKLLI-LGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDV 132 (469)
Q Consensus 56 ~~~~~~-~~~iy~-~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v 132 (469)
++++.. ++.||+ .... ...+.+||+.+.....+... .. ..-++++.- ++.||+... .+.+
T Consensus 27 ~~i~~~~~g~l~v~~~~~------~~~i~~~~~~~~~~~~~~~~---~~-~~p~~i~~~~~g~l~v~~~-------~~~i 89 (270)
T 1rwi_B 27 SGVAVDSAGNVYVTSEGM------YGRVVKLATGSTGTTVLPFN---GL-YQPQGLAVDGAGTVYVTDF-------NNRV 89 (270)
T ss_dssp EEEEECTTCCEEEEECSS------SCEEEEECC-----EECCCC---SC-CSCCCEEECTTCCEEEEET-------TTEE
T ss_pred cceEECCCCCEEEEccCC------CCcEEEecCCCcccceEeeC---Cc-CCcceeEECCCCCEEEEcC-------CCEE
Confidence 344433 567888 4221 23488999877765544311 11 111233333 457887653 2358
Q ss_pred EEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEE
Q 012184 133 HFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI 212 (469)
Q Consensus 133 ~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~ 212 (469)
++||+.+......... . ...-+.++...++.+|+.... .+.+++|+..+....... .... .....++
T Consensus 90 ~~~d~~~~~~~~~~~~-~---~~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~~~~~~~~~-~~~~---~~p~~i~ 156 (270)
T 1rwi_B 90 VTLAAGSNNQTVLPFD-G---LNYPEGLAVDTQGAVYVADRG-----NNRVVKLAAGSKTQTVLP-FTGL---NDPDGVA 156 (270)
T ss_dssp EEECTTCSCCEECCCC-S---CSSEEEEEECTTCCEEEEEGG-----GTEEEEECTTCCSCEECC-CCSC---CSCCCEE
T ss_pred EEEeCCCceEeeeecC-C---cCCCcceEECCCCCEEEEECC-----CCEEEEEECCCceeEeec-cccC---CCceeEE
Confidence 9999887654433211 1 112234444446678886532 246888876655443321 1111 1122333
Q ss_pred EE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEE
Q 012184 213 TI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMR 291 (469)
Q Consensus 213 ~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d 291 (469)
.. ++++|+.... ...+.+||+....-........ .....+.+++++.||+....+ +.+++||
T Consensus 157 ~~~~g~l~v~~~~-----~~~i~~~~~~~~~~~~~~~~~~--------~~p~~i~~d~~g~l~v~~~~~----~~v~~~~ 219 (270)
T 1rwi_B 157 VDNSGNVYVTDTD-----NNRVVKLEAESNNQVVLPFTDI--------TAPWGIAVDEAGTVYVTEHNT----NQVVKLL 219 (270)
T ss_dssp ECTTCCEEEEEGG-----GTEEEEECTTTCCEEECCCSSC--------CSEEEEEECTTCCEEEEETTT----SCEEEEC
T ss_pred EeCCCCEEEEECC-----CCEEEEEecCCCceEeecccCC--------CCceEEEECCCCCEEEEECCC----CcEEEEc
Confidence 33 4678877542 2368899987765433211110 122344555556788776432 3488888
Q ss_pred CCCC
Q 012184 292 LKPR 295 (469)
Q Consensus 292 ~~~~ 295 (469)
+...
T Consensus 220 ~~~~ 223 (270)
T 1rwi_B 220 AGST 223 (270)
T ss_dssp TTCS
T ss_pred CCCC
Confidence 8654
No 152
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.35 E-value=0.46 Score=37.64 Aligned_cols=69 Identities=19% Similarity=0.300 Sum_probs=25.8
Q ss_pred HHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184 355 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML 423 (469)
Q Consensus 355 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l 423 (469)
.+.++...+...+.........+..+...+......+..+++.-+..+....+++..+..+..+++.++
T Consensus 17 ~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l 85 (129)
T 2fxo_A 17 SMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKV 85 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333344444444433333333333333333333333333333333333333334443333333444443
No 153
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=95.32 E-value=2 Score=40.65 Aligned_cols=195 Identities=11% Similarity=0.070 Sum_probs=95.8
Q ss_pred CEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCc-ceEEEEE---CCEEEEEeccCCCCCccCcEEEEECC
Q 012184 63 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARG-GHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLE 138 (469)
Q Consensus 63 ~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~-~~~~~~~---~~~lyi~GG~~~~~~~~~~v~~~d~~ 138 (469)
+..++.|+.+. .+..||+.++.-...... ..+.... ....+.+ ++.+++.|+.+. .+.+||+.
T Consensus 170 ~~~l~s~s~D~------~i~~wd~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~------~v~~wd~~ 236 (380)
T 3iz6_a 170 ETRLITGSGDQ------TCVLWDVTTGQRISIFGS-EFPSGHTADVLSLSINSLNANMFISGSCDT------TVRLWDLR 236 (380)
T ss_dssp SSCEEEECTTS------CEEEECTTTCCEEEEECC-CSSSSCCSCEEEEEECSSSCCEEEEEETTS------CEEEEETT
T ss_pred CCEEEEECCCC------cEEEEEcCCCcEEEEeec-ccCCCCccCeEEEEeecCCCCEEEEEECCC------eEEEEECC
Confidence 34455555432 288899988875443311 1222211 1222223 457788887653 38888876
Q ss_pred CCe--EEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCC--CCC-cceEEEE
Q 012184 139 TMT--WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLV--TGR-AGHAGIT 213 (469)
Q Consensus 139 t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p--~~r-~~~~~~~ 213 (469)
... -..+. + ....-.++....++..++.|+.+ ..+.++|+.+..-.......... ... .-.+++.
T Consensus 237 ~~~~~~~~~~--~---h~~~v~~v~~~p~~~~l~s~s~D-----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 306 (380)
T 3iz6_a 237 ITSRAVRTYH--G---HEGDINSVKFFPDGQRFGTGSDD-----GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAF 306 (380)
T ss_dssp TTCCCCEEEC--C---CSSCCCEEEECTTSSEEEEECSS-----SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEE
T ss_pred CCCcceEEEC--C---cCCCeEEEEEecCCCeEEEEcCC-----CeEEEEECCCCcEEEEecccccccccccCceEEEEE
Confidence 321 11111 1 01111233333466677777765 35889998877543322111100 000 1112222
Q ss_pred E-CCEEEEEecCCCCCCcceEEEEECCCCcEEE-eccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEE
Q 012184 214 I-DENWYIVGGGDNNNGCQETIVLNMTKLAWSI-LTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMR 291 (469)
Q Consensus 214 ~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~-~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d 291 (469)
. ++.+++.|+.+ ..+.+||+.+..-.. +..+... ....+..+...+++.+++.|+.++. +.+++
T Consensus 307 s~~g~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~-----h~~~v~~l~~s~dg~~l~sgs~D~~----i~iW~ 372 (380)
T 3iz6_a 307 SISGRLLFAGYSN-----GDCYVWDTLLAEMVLNLGTLQNS-----HEGRISCLGLSSDGSALCTGSWDKN----LKIWA 372 (380)
T ss_dssp CSSSSEEEEECTT-----SCEEEEETTTCCEEEEECCSCSS-----CCCCCCEEEECSSSSEEEEECTTSC----EEEEE
T ss_pred CCCCCEEEEEECC-----CCEEEEECCCCceEEEEecccCC-----CCCceEEEEECCCCCEEEEeeCCCC----EEEEe
Confidence 2 56677776643 358899987665432 2111110 0111223344456677888887764 66677
Q ss_pred CCC
Q 012184 292 LKP 294 (469)
Q Consensus 292 ~~~ 294 (469)
+..
T Consensus 373 ~~~ 375 (380)
T 3iz6_a 373 FSG 375 (380)
T ss_dssp CCS
T ss_pred cCC
Confidence 654
No 154
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=95.31 E-value=1.5 Score=44.34 Aligned_cols=205 Identities=16% Similarity=0.101 Sum_probs=104.9
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCC--------CCCCcceEEEEECCEEEEEeccCCCCCccCcEE
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKV--------PVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVH 133 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~--------p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~ 133 (469)
|..+|+.. +. .+.+.++|..|.+=.....++.+ |.+|.....+..++..+++-- ...+.++
T Consensus 255 Gk~l~v~n-~~-----~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~-----~~~g~v~ 323 (567)
T 1qks_A 255 DKYAIAGA-YW-----PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV-----KETGKIL 323 (567)
T ss_dssp TTEEEEEE-EE-----TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE-----TTTTEEE
T ss_pred CCEEEEEE-cc-----CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe-----cCCCeEE
Confidence 44566653 32 23488899888765443322211 223333322222333333321 1256789
Q ss_pred EEECCCCeEEEeeeCCCCCCCCCCceEEEEcCc-EEEEEecCCCCcccCcEEEEECCCCceEeeeec-CCCCCCCcceEE
Q 012184 134 FLDLETMTWDAVEVTQTPPAPRYDHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIK-GDLVTGRAGHAG 211 (469)
Q Consensus 134 ~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~-~~~p~~r~~~~~ 211 (469)
++|..+.....+.. .+..+.-|.+....++ ++|+... ..|.+.++|+.+++-...-.. +..|.|..+...
T Consensus 324 ~vd~~~~~~~~v~~---i~~~~~~~d~~~~pdgr~~~va~~-----~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~ 395 (567)
T 1qks_A 324 LVDYTDLNNLKTTE---ISAERFLHDGGLDGSHRYFITAAN-----ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF 395 (567)
T ss_dssp EEETTCSSEEEEEE---EECCSSEEEEEECTTSCEEEEEEG-----GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE
T ss_pred EEecCCCccceeee---eeccccccCceECCCCCEEEEEeC-----CCCeEEEEECCCCcEEEEEeccCcCCCCccceee
Confidence 99988766544432 2344555555544444 4555432 247899999998875433334 455555333222
Q ss_pred EEE--CCEEEEEecCCCCCCcceEEEEECCCC-----cEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCC--C
Q 012184 212 ITI--DENWYIVGGGDNNNGCQETIVLNMTKL-----AWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG--K 282 (469)
Q Consensus 212 ~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~-----~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~--~ 282 (469)
.. .+.+|+.+-.. ...+.++|..+. .|+.+..+.... +.++.+.+...+.++||---.+. .
T Consensus 396 -~~p~~g~v~~t~~~g----~~~Vsvid~~~~~~~~~~~kvv~~i~~~g-----~g~~~i~~~p~~~~l~v~~~~~~~~~ 465 (567)
T 1qks_A 396 -VHPTFGPVWATSHMG----DDSVALIGTDPEGHPDNAWKILDSFPALG-----GGSLFIKTHPNSQYLYVDATLNPEAE 465 (567)
T ss_dssp -EETTTEEEEEEEBSS----SSEEEEEECCTTTCTTTBTSEEEEEECSC-----SCCCCEECCTTCSEEEEECTTCSSHH
T ss_pred -ECCCCCcEEEeCCCC----CCeEEEecCCCCCCccccCEEEEEEecCC-----CCCEEEEeCCCCCeEEEecCCCCCcc
Confidence 23 24566654211 235778887663 387766554321 12222222222568887542221 1
Q ss_pred CCceEEEEECCCC
Q 012184 283 YNNEVFVMRLKPR 295 (469)
Q Consensus 283 ~~~~~~~~d~~~~ 295 (469)
..+.+.+||+.+.
T Consensus 466 ~~~~v~v~d~~~~ 478 (567)
T 1qks_A 466 ISGSVAVFDIKAM 478 (567)
T ss_dssp HHTCEEEEEGGGC
T ss_pred cCceEEEEECCcc
Confidence 2457999998765
No 155
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=95.30 E-value=1.5 Score=40.38 Aligned_cols=202 Identities=8% Similarity=-0.051 Sum_probs=101.0
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETM 140 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~ 140 (469)
++.||+.+... ..+++||+.++....+... +.. .-++++.- ++++|+....... ..+.+++||+.+.
T Consensus 55 ~g~l~~~~~~~------~~i~~~d~~~~~~~~~~~~---~~~-~~~~i~~~~dg~l~v~~~~~~~--~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 55 QGQLFLLDVFE------GNIFKINPETKEIKRPFVS---HKA-NPAAIKIHKDGRLFVCYLGDFK--STGGIFAATENGD 122 (333)
T ss_dssp TSCEEEEETTT------CEEEEECTTTCCEEEEEEC---SSS-SEEEEEECTTSCEEEEECTTSS--SCCEEEEECTTSC
T ss_pred CCCEEEEECCC------CEEEEEeCCCCcEEEEeeC---CCC-CcceEEECCCCcEEEEeCCCCC--CCceEEEEeCCCC
Confidence 56788776532 2499999999988776521 111 12223322 4678776532211 1356999999888
Q ss_pred eEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCC-CCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CC-E
Q 012184 141 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS-HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DE-N 217 (469)
Q Consensus 141 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~-~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~-~ 217 (469)
....+.. .......-..++...++.+|+..... .......+++||+.+.+...+... . .....++.. ++ .
T Consensus 123 ~~~~~~~--~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~---~~~~~i~~~~dg~~ 195 (333)
T 2dg1_A 123 NLQDIIE--DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--I---SVANGIALSTDEKV 195 (333)
T ss_dssp SCEEEEC--SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--E---SSEEEEEECTTSSE
T ss_pred EEEEEEc--cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--C---CcccceEECCCCCE
Confidence 7653321 11112222233444466777754321 112235799999887766554311 0 112233333 33 4
Q ss_pred EEEEecCCCCCCcceEEEEECCC--CcEEEec-cCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184 218 WYIVGGGDNNNGCQETIVLNMTK--LAWSILT-SVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP 294 (469)
Q Consensus 218 l~v~GG~~~~~~~~d~~~~d~~~--~~W~~~~-~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~ 294 (469)
+|+.... .+.+++||+.+ .....+. ......+. ......+.+++++.+++.... .+.+++||++.
T Consensus 196 l~v~~~~-----~~~i~~~d~~~~g~~~~~~~~~~~~~~~~---~~~~~~i~~d~~G~l~v~~~~----~~~v~~~d~~g 263 (333)
T 2dg1_A 196 LWVTETT-----ANRLHRIALEDDGVTIQPFGATIPYYFTG---HEGPDSCCIDSDDNLYVAMYG----QGRVLVFNKRG 263 (333)
T ss_dssp EEEEEGG-----GTEEEEEEECTTSSSEEEEEEEEEEECCS---SSEEEEEEEBTTCCEEEEEET----TTEEEEECTTS
T ss_pred EEEEeCC-----CCeEEEEEecCCCcCcccccceEEEecCC---CCCCCceEECCCCCEEEEEcC----CCEEEEECCCC
Confidence 7776432 24688999853 2332211 00000000 012223445555667766532 23588888743
No 156
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=95.28 E-value=3.3 Score=42.99 Aligned_cols=125 Identities=10% Similarity=0.045 Sum_probs=69.3
Q ss_pred eeEEECCEEEEEccccCCCCCcceEEEEECCCCe--EEEeecCCCC--CC---CCcceEEEEECCEEEEEeccCCCCCcc
Q 012184 57 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKV--PV---ARGGHSVTLVGSRLIIFGGEDRSRKLL 129 (469)
Q Consensus 57 ~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~--p~---~r~~~~~~~~~~~lyi~GG~~~~~~~~ 129 (469)
+-++.++.||+.... ..++.+|..|++ |+.-...... +. .....+.++.++.||+-.. .
T Consensus 65 ~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-------d 130 (689)
T 1yiq_A 65 TPIVVDGVMYTTGPF-------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-------D 130 (689)
T ss_dssp CCEEETTEEEEECGG-------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------T
T ss_pred cCEEECCEEEEEcCC-------CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-------C
Confidence 345679999998642 349999998886 8864311100 00 0112234556788877531 3
Q ss_pred CcEEEEECCCCe--EEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc--eEee
Q 012184 130 NDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQP 196 (469)
Q Consensus 130 ~~v~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~ 196 (469)
..++.+|..|++ |+.-.............+.++. ++.+|+-.+.........++.||..|++ |..-
T Consensus 131 g~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 131 GRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVV-NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp SEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEE-CCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 459999998875 8765320110001111222334 6666663322111234579999999876 8764
No 157
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=95.28 E-value=1.6 Score=39.23 Aligned_cols=195 Identities=9% Similarity=0.056 Sum_probs=99.7
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCc-ceEEEEE--CCEEEEEeccCCCCCccCcEEEEECC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARG-GHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLE 138 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~-~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~ 138 (469)
++.||+.+... ..+.+||+.......+...+..+.... -+.++.. ++.||+.+... .+.+.+||..
T Consensus 40 ~g~l~v~~~~~------~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~-----~~~i~~~d~~ 108 (286)
T 1q7f_A 40 QNDIIVADTNN------HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-----THQIQIYNQY 108 (286)
T ss_dssp TCCEEEEEGGG------TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-----GCEEEEECTT
T ss_pred CCCEEEEECCC------CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC-----CCEEEEECCC
Confidence 56788875432 348999988555444443221111111 2333332 56888875321 3458999965
Q ss_pred CCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCE
Q 012184 139 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DEN 217 (469)
Q Consensus 139 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~ 217 (469)
...-..+.. +....-+.++...++.+|+.... .+.+++||+.......+...+.. .....++.. ++.
T Consensus 109 g~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~~g~~~~~~~~~~~~---~~p~~i~~~~~g~ 176 (286)
T 1q7f_A 109 GQFVRKFGA----TILQHPRGVTVDNKGRIIVVECK-----VMRVIIFDQNGNVLHKFGCSKHL---EFPNGVVVNDKQE 176 (286)
T ss_dssp SCEEEEECT----TTCSCEEEEEECTTSCEEEEETT-----TTEEEEECTTSCEEEEEECTTTC---SSEEEEEECSSSE
T ss_pred CcEEEEecC----ccCCCceEEEEeCCCCEEEEECC-----CCEEEEEcCCCCEEEEeCCCCcc---CCcEEEEECCCCC
Confidence 444333321 11112234444446678886542 25689999765544333211111 112233333 467
Q ss_pred EEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184 218 WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP 294 (469)
Q Consensus 218 l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~ 294 (469)
+|+.... .+.+.+||+.......+.. .+.. .....+.+++++.||+....++ ..+.+||++.
T Consensus 177 l~v~~~~-----~~~i~~~~~~g~~~~~~~~-~g~~------~~p~~i~~d~~G~l~v~~~~~~---~~i~~~~~~g 238 (286)
T 1q7f_A 177 IFISDNR-----AHCVKVFNYEGQYLRQIGG-EGIT------NYPIGVGINSNGEILIADNHNN---FNLTIFTQDG 238 (286)
T ss_dssp EEEEEGG-----GTEEEEEETTCCEEEEESC-TTTS------CSEEEEEECTTCCEEEEECSSS---CEEEEECTTS
T ss_pred EEEEECC-----CCEEEEEcCCCCEEEEEcc-CCcc------CCCcEEEECCCCCEEEEeCCCC---EEEEEECCCC
Confidence 8887542 2468999986654444432 1100 1223345555667887764331 1588888654
No 158
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=95.17 E-value=1.9 Score=39.63 Aligned_cols=189 Identities=14% Similarity=0.115 Sum_probs=86.3
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-------CCEEEEEeccCCCCCccCcEEE
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-------GSRLIIFGGEDRSRKLLNDVHF 134 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-------~~~lyi~GG~~~~~~~~~~v~~ 134 (469)
++.+++.|+.+. .+..+|+....-..+. + ... .-..+... ++.+++.||.+. .+.+
T Consensus 118 ~~~~l~s~s~D~------~i~vwd~~~~~~~~~~--~--h~~-~v~~~~~~~~~~~~~~~~~l~s~~~d~------~i~~ 180 (319)
T 3frx_A 118 KASMIISGSRDK------TIKVWTIKGQCLATLL--G--HND-WVSQVRVVPNEKADDDSVTIISAGNDK------MVKA 180 (319)
T ss_dssp TSCEEEEEETTS------CEEEEETTSCEEEEEC--C--CSS-CEEEEEECCC------CCEEEEEETTS------CEEE
T ss_pred CCCEEEEEeCCC------eEEEEECCCCeEEEEe--c--cCC-cEEEEEEccCCCCCCCccEEEEEeCCC------EEEE
Confidence 556677776543 2777887655433332 1 011 01111111 223555555432 4888
Q ss_pred EECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE
Q 012184 135 LDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI 214 (469)
Q Consensus 135 ~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~ 214 (469)
||+.+..-...- .+ ....-.+++...++.+++.|+.+ ..+.++|+.+.+-.... .. +. .-.+++..
T Consensus 181 wd~~~~~~~~~~-~~---h~~~v~~~~~sp~g~~l~s~~~d-----g~i~iwd~~~~~~~~~~-~~--~~--~v~~~~~s 246 (319)
T 3frx_A 181 WNLNQFQIEADF-IG---HNSNINTLTASPDGTLIASAGKD-----GEIMLWNLAAKKAMYTL-SA--QD--EVFSLAFS 246 (319)
T ss_dssp EETTTTEEEEEE-CC---CCSCEEEEEECTTSSEEEEEETT-----CEEEEEETTTTEEEEEE-EC--CS--CEEEEEEC
T ss_pred EECCcchhheee-cC---CCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcEEEEe-cC--CC--cEEEEEEc
Confidence 998877643321 11 11111233333466677777755 35889998776532211 11 11 12233333
Q ss_pred -CCEEEEEecCCCCCCcceEEEEECCCCcE-EEecc-CCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEE
Q 012184 215 -DENWYIVGGGDNNNGCQETIVLNMTKLAW-SILTS-VKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMR 291 (469)
Q Consensus 215 -~~~l~v~GG~~~~~~~~d~~~~d~~~~~W-~~~~~-~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d 291 (469)
++.+++.+.. ..+.+|++....- ..+.. ...... . .......+...+++.+++.|+.++. +.+||
T Consensus 247 p~~~~la~~~~------~~i~v~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~spdg~~l~sg~~Dg~----i~vWd 314 (319)
T 3frx_A 247 PNRYWLAAATA------TGIKVFSLDPQYLVDDLRPEFAGYSK-A-AEPHAVSLAWSADGQTLFAGYTDNV----IRVWQ 314 (319)
T ss_dssp SSSSEEEEEET------TEEEEEEETTEEEEEEECCCCTTCCG-G-GCCCEEEEEECTTSSEEEEEETTSC----EEEEE
T ss_pred CCCCEEEEEcC------CCcEEEEeCcCeeeeccCcccccccc-C-cCcceeEEEECCCCCEEEEeecCce----EEEEE
Confidence 3344444331 2355666554322 22211 111000 0 0112233445566677888887663 66666
Q ss_pred CC
Q 012184 292 LK 293 (469)
Q Consensus 292 ~~ 293 (469)
+.
T Consensus 315 ~~ 316 (319)
T 3frx_A 315 VM 316 (319)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 159
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=95.17 E-value=1.8 Score=41.49 Aligned_cols=147 Identities=12% Similarity=0.048 Sum_probs=74.7
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
++.+++.|+.++ .+.+||..++.....- .... ..-.++.+ ++.+++.||.+. .+.+||+.+
T Consensus 119 ~~~~l~s~s~Dg------~i~vwd~~~~~~~~~l---~~h~--~~V~~v~~~~~~~~l~sgs~D~------~i~iwd~~~ 181 (410)
T 1vyh_C 119 VFSVMVSASEDA------TIKVWDYETGDFERTL---KGHT--DSVQDISFDHSGKLLASCSADM------TIKLWDFQG 181 (410)
T ss_dssp SSSEEEEEESSS------CEEEEETTTCCCCEEE---CCCS--SCEEEEEECTTSSEEEEEETTS------CCCEEETTS
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEE---eccC--CcEEEEEEcCCCCEEEEEeCCC------eEEEEeCCC
Confidence 455777776543 2888998887643322 1111 11222333 456777777553 366788877
Q ss_pred CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCE
Q 012184 140 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DEN 217 (469)
Q Consensus 140 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~ 217 (469)
......- .+ ....-.++....++..++.|+.+ ..+.++|+.+..-...- .+ .......+.+ ++.
T Consensus 182 ~~~~~~~-~~---h~~~V~~v~~~p~~~~l~s~s~D-----~~i~~wd~~~~~~~~~~-~~----h~~~v~~~~~~~~g~ 247 (410)
T 1vyh_C 182 FECIRTM-HG---HDHNVSSVSIMPNGDHIVSASRD-----KTIKMWEVQTGYCVKTF-TG----HREWVRMVRPNQDGT 247 (410)
T ss_dssp SCEEECC-CC---CSSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTCCEEEEE-EC----CSSCEEEEEECTTSS
T ss_pred CceeEEE-cC---CCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCcEEEEE-eC----CCccEEEEEECCCCC
Confidence 6543211 01 11111222333355566777654 45889998877543321 11 1111112222 456
Q ss_pred EEEEecCCCCCCcceEEEEECCCCcEE
Q 012184 218 WYIVGGGDNNNGCQETIVLNMTKLAWS 244 (469)
Q Consensus 218 l~v~GG~~~~~~~~d~~~~d~~~~~W~ 244 (469)
+++.|+.++ .+.+||+.+....
T Consensus 248 ~l~s~s~D~-----~v~vwd~~~~~~~ 269 (410)
T 1vyh_C 248 LIASCSNDQ-----TVRVWVVATKECK 269 (410)
T ss_dssp EEEEEETTS-----CEEEEETTTCCEE
T ss_pred EEEEEcCCC-----eEEEEECCCCcee
Confidence 777777532 4677887766543
No 160
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=95.15 E-value=0.49 Score=45.93 Aligned_cols=149 Identities=13% Similarity=0.153 Sum_probs=72.3
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETM 140 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~ 140 (469)
++.+++.|+.++ .+.++|+.++....+..... ......++... ++.+++.|+.+ ..|.++|+.+.
T Consensus 176 ~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~~d------g~i~~wd~~~~ 241 (435)
T 4e54_B 176 NTNQFYASSMEG------TTRLQDFKGNILRVFASSDT--INIWFCSLDVSASSRMVVTGDNV------GNVILLNMDGK 241 (435)
T ss_dssp CTTEEEEECSSS------CEEEEETTSCEEEEEECCSS--CSCCCCCEEEETTTTEEEEECSS------SBEEEEESSSC
T ss_pred CCCEEEEEeCCC------EEEEeeccCCceeEEeccCC--CCccEEEEEECCCCCEEEEEeCC------CcEeeeccCcc
Confidence 456777776543 28888998887666553211 11111222222 45677777644 34888898654
Q ss_pred eEEEeeeCCCCCCCCCCceEEEEc--CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CC
Q 012184 141 TWDAVEVTQTPPAPRYDHSAALHA--NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DE 216 (469)
Q Consensus 141 ~W~~~~~~g~~p~~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~ 216 (469)
.-..+. .....-..+.+. ++.+++.|+.+. .|.+||+.+..-...... .... ...-..+.+ ++
T Consensus 242 ~~~~~~------~h~~~v~~v~~~p~~~~~~~s~s~d~-----~v~iwd~~~~~~~~~~~~-~~~h-~~~v~~~~~spdg 308 (435)
T 4e54_B 242 ELWNLR------MHKKKVTHVALNPCCDWFLATASVDQ-----TVKIWDLRQVRGKASFLY-SLPH-RHPVNAACFSPDG 308 (435)
T ss_dssp BCCCSB------CCSSCEEEEEECTTCSSEEEEEETTS-----BCCEEETTTCCSSSCCSB-CCBC-SSCEEECCBCTTS
T ss_pred eeEEEe------cccceEEeeeecCCCceEEEEecCcc-----eeeEEecccccccceEEE-eeec-cccccceeECCCC
Confidence 321111 111111223332 334666776543 467888766543211000 0000 111111122 45
Q ss_pred EEEEEecCCCCCCcceEEEEECCCCc
Q 012184 217 NWYIVGGGDNNNGCQETIVLNMTKLA 242 (469)
Q Consensus 217 ~l~v~GG~~~~~~~~d~~~~d~~~~~ 242 (469)
..++.|+.++ .+.+||+.+..
T Consensus 309 ~~l~s~~~D~-----~i~iwd~~~~~ 329 (435)
T 4e54_B 309 ARLLTTDQKS-----EIRVYSASQWD 329 (435)
T ss_dssp SEEEEEESSS-----CEEEEESSSSS
T ss_pred CeeEEEcCCC-----EEEEEECCCCc
Confidence 6677776533 47788887643
No 161
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=95.14 E-value=2.1 Score=39.92 Aligned_cols=114 Identities=9% Similarity=0.046 Sum_probs=53.8
Q ss_pred Cc-EEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CC-EEEEEecCCCCCCcceEEEEEC--
Q 012184 165 NR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DE-NWYIVGGGDNNNGCQETIVLNM-- 238 (469)
Q Consensus 165 ~~-~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~-~l~v~GG~~~~~~~~d~~~~d~-- 238 (469)
++ ++|+.+.. .+.+.+||+.++.+..+......+........+.+ ++ .||+..... .+.+.+|++
T Consensus 221 dg~~l~v~~~~-----~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~----~~~i~v~~~~~ 291 (361)
T 3scy_A 221 DGKFAYLINEI-----GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK----ADGVAIFKVDE 291 (361)
T ss_dssp TSSEEEEEETT-----TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS----SCEEEEEEECT
T ss_pred CCCEEEEEcCC-----CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC----CCEEEEEEEcC
Confidence 44 57765532 25688999888777655432222332222233333 34 455543320 124555555
Q ss_pred CCCcEEEeccCCC-CCCCCCCCcceEEEEEcCCc-EEEEEeccCCCCCceEEEEECCCCCC
Q 012184 239 TKLAWSILTSVKG-RNPLASEGLSVCSAIIEGEH-HLVAFGGYNGKYNNEVFVMRLKPRDI 297 (469)
Q Consensus 239 ~~~~W~~~~~~~~-~~p~~r~~~s~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~d~~~~~w 297 (469)
.+..+..+...+. ..| . .+.+.+++ +||+.+..++ .-.+|.+|+.+...
T Consensus 292 ~~g~~~~~~~~~~g~~~-----~---~~~~spdg~~l~~~~~~~~--~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 292 TNGTLTKVGYQLTGIHP-----R---NFIITPNGKYLLVACRDTN--VIQIFERDQATGLL 342 (361)
T ss_dssp TTCCEEEEEEEECSSCC-----C---EEEECTTSCEEEEEETTTT--EEEEEEECTTTCCE
T ss_pred CCCcEEEeeEecCCCCC-----c---eEEECCCCCEEEEEECCCC--CEEEEEEECCCCcE
Confidence 5667766554332 111 1 23344444 5655543322 22355566655543
No 162
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=95.11 E-value=2.3 Score=40.22 Aligned_cols=154 Identities=16% Similarity=0.137 Sum_probs=73.8
Q ss_pred EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCc-eEEEEc--CcEEEEEecCCCCcccCcEEEEECCCC
Q 012184 115 RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH-SAALHA--NRYLIVFGGCSHSIFFNDLHVLDLQTN 191 (469)
Q Consensus 115 ~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~-~~~~~~--~~~l~v~GG~~~~~~~~~i~~~d~~~~ 191 (469)
..++.|+.+ ..+.+||+.++.-...... ..+...... ..+.+. ++.+++.|+.+. .+.++|+...
T Consensus 171 ~~l~s~s~D------~~i~~wd~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~-----~v~~wd~~~~ 238 (380)
T 3iz6_a 171 TRLITGSGD------QTCVLWDVTTGQRISIFGS-EFPSGHTADVLSLSINSLNANMFISGSCDT-----TVRLWDLRIT 238 (380)
T ss_dssp SCEEEECTT------SCEEEECTTTCCEEEEECC-CSSSSCCSCEEEEEECSSSCCEEEEEETTS-----CEEEEETTTT
T ss_pred CEEEEECCC------CcEEEEEcCCCcEEEEeec-ccCCCCccCeEEEEeecCCCCEEEEEECCC-----eEEEEECCCC
Confidence 345555543 2488899988775443211 111111111 122221 455788887653 5788887532
Q ss_pred c--eEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEc
Q 012184 192 E--WSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIE 268 (469)
Q Consensus 192 ~--W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~ 268 (469)
. -..+. + ... .-.+++.. ++..++.|+.++ .+.++|+.+..-...-....... ......+..+...
T Consensus 239 ~~~~~~~~--~--h~~-~v~~v~~~p~~~~l~s~s~D~-----~i~lwd~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s 307 (380)
T 3iz6_a 239 SRAVRTYH--G--HEG-DINSVKFFPDGQRFGTGSDDG-----TCRLFDMRTGHQLQVYNREPDRN-DNELPIVTSVAFS 307 (380)
T ss_dssp CCCCEEEC--C--CSS-CCCEEEECTTSSEEEEECSSS-----CEEEEETTTTEEEEEECCCCSSS-CCSSCSCSEEEEC
T ss_pred CcceEEEC--C--cCC-CeEEEEEecCCCeEEEEcCCC-----eEEEEECCCCcEEEEeccccccc-ccccCceEEEEEC
Confidence 1 11111 1 111 11123333 456777777543 47788988765433211111100 0000112223334
Q ss_pred CCcEEEEEeccCCCCCceEEEEECCCC
Q 012184 269 GEHHLVAFGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 269 ~~~~l~v~GG~~~~~~~~~~~~d~~~~ 295 (469)
+++.+++.|+.++ .+.+||+...
T Consensus 308 ~~g~~l~~g~~dg----~i~vwd~~~~ 330 (380)
T 3iz6_a 308 ISGRLLFAGYSNG----DCYVWDTLLA 330 (380)
T ss_dssp SSSSEEEEECTTS----CEEEEETTTC
T ss_pred CCCCEEEEEECCC----CEEEEECCCC
Confidence 4556777777655 4888887554
No 163
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=95.11 E-value=1.2 Score=45.64 Aligned_cols=150 Identities=13% Similarity=0.004 Sum_probs=83.4
Q ss_pred cceEEEEECC-CC---eEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCC-
Q 012184 78 SMIVRFIDLE-TN---LCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQT- 150 (469)
Q Consensus 78 ~~~~~~~d~~-t~---~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~- 150 (469)
...++++|+. ++ ....+... . ........+ ++++|+.+..+. ...++++|+.+..+..+.....
T Consensus 216 ~~~i~~~d~~~~g~~~~~~~l~~~---~--~~~~~~~~~spdg~l~~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~ 286 (662)
T 3azo_A 216 GTELKTARVTEDGRFADTRTLLGG---P--EEAIAQAEWAPDGSLIVATDRTG----WWNLHRVDPATGAATQLCRREEE 286 (662)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEE---T--TBCEEEEEECTTSCEEEEECTTS----SCEEEEECTTTCCEEESSCCSSB
T ss_pred CcEEEEEEECCCCcccccEEeCCC---C--CceEcceEECCCCeEEEEECCCC----CeEEEEEECCCCceeeccccccc
Confidence 3579999998 67 44444311 1 111222223 567776665432 3469999998999887753211
Q ss_pred CCCCCC---CceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEE-EEECCEEEEEecCCC
Q 012184 151 PPAPRY---DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAG-ITIDENWYIVGGGDN 226 (469)
Q Consensus 151 ~p~~r~---~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~-~~~~~~l~v~GG~~~ 226 (469)
...|.. ...+....++++++.+.. ....+|.+|+.+.....+.. +. .....+ ...++.+++..+..
T Consensus 287 ~~~p~w~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~d~~~~~~~~l~~----~~-~~~~~~~s~~~~~~~~~~~~~- 356 (662)
T 3azo_A 287 FAGPLWTPGMRWFAPLANGLIAVVHGK----GAAVLGILDPESGELVDAAG----PW-TEWAATLTVSGTRAVGVAASP- 356 (662)
T ss_dssp SSCCCCSTTCCSEEECTTSCEEEEEBS----SSCEEEEEETTTTEEEECCS----SC-CEEEEEEEEETTEEEEEEEET-
T ss_pred ccCccccccCceEeEeCCCEEEEEEEc----CccEEEEEECCCCcEEEecC----CC-CeEEEEEecCCCEEEEEEcCC-
Confidence 001111 122333346667766653 23678889998887666531 11 111223 33456666654422
Q ss_pred CCCcceEEEEECCCCcEEEec
Q 012184 227 NNGCQETIVLNMTKLAWSILT 247 (469)
Q Consensus 227 ~~~~~d~~~~d~~~~~W~~~~ 247 (469)
.....+|.+|+.+.....+.
T Consensus 357 -~~~~~i~~~d~~~g~~~~l~ 376 (662)
T 3azo_A 357 -RTAYEVVELDTVTGRARTIG 376 (662)
T ss_dssp -TEEEEEEEEETTTCCEEEEE
T ss_pred -CCCCEEEEEECCCCceEEee
Confidence 12457999999888877764
No 164
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=95.10 E-value=1.9 Score=39.22 Aligned_cols=187 Identities=7% Similarity=-0.059 Sum_probs=90.0
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME 95 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~ 95 (469)
.+++||+.++.-..+... .+....+..-++.+|+.. . +.+++||+.++.++.+.
T Consensus 36 ~i~~~d~~~~~~~~~~~~------------------~~~~~i~~~~dG~l~v~~---~-----~~l~~~d~~~g~~~~~~ 89 (297)
T 3g4e_A 36 KVCRWDSFTKQVQRVTMD------------------APVSSVALRQSGGYVATI---G-----TKFCALNWKEQSAVVLA 89 (297)
T ss_dssp EEEEEETTTCCEEEEECS------------------SCEEEEEEBTTSSEEEEE---T-----TEEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCcEEEEeCC------------------CceEEEEECCCCCEEEEE---C-----CeEEEEECCCCcEEEEE
Confidence 678888887765443321 111111222255665542 1 24999999999998876
Q ss_pred cCCC-CCCCCcceEEEEECCEEEEEeccCCC------CCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcC-cE
Q 012184 96 TSGK-VPVARGGHSVTLVGSRLIIFGGEDRS------RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHAN-RY 167 (469)
Q Consensus 96 ~~g~-~p~~r~~~~~~~~~~~lyi~GG~~~~------~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~~ 167 (469)
.... .+..+....++.-+++||+- ..... ......++++++.. ....+.. ....| ..++...+ +.
T Consensus 90 ~~~~~~~~~~~~di~~d~dG~l~~~-~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~--~~~~p---ngi~~spdg~~ 162 (297)
T 3g4e_A 90 TVDNDKKNNRFNDGKVDPAGRYFAG-TMAEETAPAVLERHQGALYSLFPDH-HVKKYFD--QVDIS---NGLDWSLDHKI 162 (297)
T ss_dssp ECCTTCSSEEEEEEEECTTSCEEEE-EEECCSBTTBCCTTCEEEEEECTTS-CEEEEEE--EESBE---EEEEECTTSCE
T ss_pred ecCCCCCCCCCCCEEECCCCCEEEe-cCCcccccccccCCCcEEEEEECCC-CEEEEee--ccccc---cceEEcCCCCE
Confidence 3211 12222222222224677653 22111 11245688888753 3333321 11111 23333333 46
Q ss_pred EEEEecCCCCcccCcEEEEEC--CCCceEeeeecCCCCC-CCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcE
Q 012184 168 LIVFGGCSHSIFFNDLHVLDL--QTNEWSQPEIKGDLVT-GRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAW 243 (469)
Q Consensus 168 l~v~GG~~~~~~~~~i~~~d~--~~~~W~~~~~~~~~p~-~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W 243 (469)
+|+.... .+.|++|++ .++...........+. ......++.. +++||+.... -..+.+||+.+.+.
T Consensus 163 lyv~~~~-----~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~-----~~~v~~~d~~tG~~ 232 (297)
T 3g4e_A 163 FYYIDSL-----SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN-----GGRVIRLDPVTGKR 232 (297)
T ss_dssp EEEEEGG-----GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET-----TTEEEEECTTTCCE
T ss_pred EEEecCC-----CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC-----CCEEEEEcCCCceE
Confidence 7776542 356888886 4554432111001111 1111233332 4678876421 13589999987665
Q ss_pred EE
Q 012184 244 SI 245 (469)
Q Consensus 244 ~~ 245 (469)
..
T Consensus 233 ~~ 234 (297)
T 3g4e_A 233 LQ 234 (297)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 165
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=95.08 E-value=1.1 Score=41.51 Aligned_cols=219 Identities=14% Similarity=0.094 Sum_probs=103.3
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--C---CEEEEEccccCCCCCcceEEEEECCCCe
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--G---TKLLILGGHYKKSSDSMIVRFIDLETNL 90 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~---~~iy~~GG~~~~~~~~~~~~~~d~~t~~ 90 (469)
.+..||+.++........+. .....++.+ + +.+++.|+.++ .+..||+.+..
T Consensus 45 ~v~iw~~~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~ 101 (357)
T 3i2n_A 45 VIQLYEIQHGDLKLLREIEK-----------------AKPIKCGTFGATSLQQRYLATGDFGG------NLHIWNLEAPE 101 (357)
T ss_dssp EEEEEEECSSSEEEEEEEEE-----------------SSCEEEEECTTCCTTTCCEEEEETTS------CEEEECTTSCS
T ss_pred EEEEEeCCCCcccceeeecc-----------------cCcEEEEEEcCCCCCCceEEEecCCC------eEEEEeCCCCC
Confidence 78888998887655543321 111122222 2 46666666432 27888887664
Q ss_pred --EEEeecCCCCCCCCcceEEEE-------ECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEeeeCCCCCCCCCCce
Q 012184 91 --CGVMETSGKVPVARGGHSVTL-------VGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYDHS 159 (469)
Q Consensus 91 --W~~~~~~g~~p~~r~~~~~~~-------~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~~~~g~~p~~r~~~~ 159 (469)
-..+. + ... .-.++.. -++.+++.|+.+. .+.+||+.+.. ...+... .....+...+
T Consensus 102 ~~~~~~~--~--~~~-~v~~~~~~~~~~~s~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~~~~~-~~~~~~~v~~ 169 (357)
T 3i2n_A 102 MPVYSVK--G--HKE-IINAIDGIGGLGIGEGAPEIVTGSRDG------TVKVWDPRQKDDPVANMEPV-QGENKRDCWT 169 (357)
T ss_dssp SCSEEEC--C--CSS-CEEEEEEESGGGCC-CCCEEEEEETTS------CEEEECTTSCSSCSEEECCC-TTSCCCCEEE
T ss_pred ccEEEEE--e--ccc-ceEEEeeccccccCCCccEEEEEeCCC------eEEEEeCCCCCCcceecccc-CCCCCCceEE
Confidence 12221 0 111 0111111 1345666666432 48889988764 2333210 0001112222
Q ss_pred EE----EEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE----CCEEEEEecCCCCCCcc
Q 012184 160 AA----LHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI----DENWYIVGGGDNNNGCQ 231 (469)
Q Consensus 160 ~~----~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~----~~~l~v~GG~~~~~~~~ 231 (469)
+. ...++.+++.|+.+ ..+.+||+.+..-.... . ....-.+++.. ++..+++|+.+ .
T Consensus 170 ~~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~---~--~~~~v~~~~~~~~~~~~~~l~~~~~d-----g 234 (357)
T 3i2n_A 170 VAFGNAYNQEERVVCAGYDN-----GDIKLFDLRNMALRWET---N--IKNGVCSLEFDRKDISMNKLVATSLE-----G 234 (357)
T ss_dssp EEEECCCC-CCCEEEEEETT-----SEEEEEETTTTEEEEEE---E--CSSCEEEEEESCSSSSCCEEEEEEST-----T
T ss_pred EEEEeccCCCCCEEEEEccC-----CeEEEEECccCceeeec---C--CCCceEEEEcCCCCCCCCEEEEECCC-----C
Confidence 22 11355566666643 46899999877643321 1 11122233333 45667776643 2
Q ss_pred eEEEEECCCCc----EEEeccCCCCCCCCCCCcceEEEEEcCCcE-EEEEeccCCCCCceEEEEECCCC
Q 012184 232 ETIVLNMTKLA----WSILTSVKGRNPLASEGLSVCSAIIEGEHH-LVAFGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 232 d~~~~d~~~~~----W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~-l~v~GG~~~~~~~~~~~~d~~~~ 295 (469)
.+.+||+.+.. +... ..... ...+..+...+++. +++.|+.++ .+.+||+...
T Consensus 235 ~i~i~d~~~~~~~~~~~~~-~~~~~------~~~v~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~ 292 (357)
T 3i2n_A 235 KFHVFDMRTQHPTKGFASV-SEKAH------KSTVWQVRHLPQNRELFLTAGGAG----GLHLWKYEYP 292 (357)
T ss_dssp EEEEEEEEEEETTTEEEEE-EEECC------SSCEEEEEEETTEEEEEEEEETTS----EEEEEEEECC
T ss_pred eEEEEeCcCCCcccceeee-ccCCC------cCCEEEEEECCCCCcEEEEEeCCC----cEEEeecCCC
Confidence 56777765421 1100 00011 12233334444445 788888665 4667776543
No 166
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=95.07 E-value=2 Score=44.60 Aligned_cols=240 Identities=13% Similarity=0.026 Sum_probs=114.0
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 93 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~ 93 (469)
.+|+.+...+.|..+-..... +.. .......+.+ +++.++|.-..... ....++++|+.++....
T Consensus 95 ~l~~~~~~~~~~~~l~d~~~~-----a~~-------~~~~~~~~~~SPDG~~la~~~~~~G~-~~~~i~v~dl~tg~~~~ 161 (695)
T 2bkl_A 95 ILYWRQGESGQEKVLLDPNGW-----SKD-------GTVSLGTWAVSWDGKKVAFAQKPNAA-DEAVLHVIDVDSGEWSK 161 (695)
T ss_dssp EEEEEESTTSCCEEEECGGGS-----SSS-------SCEEEEEEEECTTSSEEEEEEEETTC-SCCEEEEEETTTCCBCS
T ss_pred EEEEEcCCCCCcEEEEchHHh-----ccC-------CCEEEEEEEECCCCCEEEEEECCCCC-ceEEEEEEECCCCCCcC
Confidence 678888777788777653211 000 0011112222 55554543322211 23459999999987531
Q ss_pred eecCCCCCCCCcceEEEEE--CCEEEEEeccCCCC-------CccCcEEEEECCCCeE--EEeeeCCCCCCCCCCceEEE
Q 012184 94 METSGKVPVARGGHSVTLV--GSRLIIFGGEDRSR-------KLLNDVHFLDLETMTW--DAVEVTQTPPAPRYDHSAAL 162 (469)
Q Consensus 94 ~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~-------~~~~~v~~~d~~t~~W--~~~~~~g~~p~~r~~~~~~~ 162 (469)
.. ..+.... ..+.+ +++.++++...... .....++++++.+..- ..+.. ....+........
T Consensus 162 ~~---~~~~~~~--~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~--~~~~~~~~~~~~~ 234 (695)
T 2bkl_A 162 VD---VIEGGKY--ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE--RTGDPTTFLQSDL 234 (695)
T ss_dssp SC---CBSCCTT--CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC--CCCCTTCEEEEEE
T ss_pred Cc---ccCcccc--cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe--cCCCCEEEEEEEE
Confidence 11 1121211 22233 45555555443321 1345699999987752 22221 1111222233333
Q ss_pred EcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCc
Q 012184 163 HANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLA 242 (469)
Q Consensus 163 ~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~ 242 (469)
-.+++.+++...... ..+++|+++..+..|..+... .... ...+..++.+|+.... ......++++|+.+..
T Consensus 235 SpDG~~l~~~~~~~~-~~~~l~~~~~~~~~~~~l~~~----~~~~-~~~~~~~g~l~~~s~~--~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 235 SRDGKYLFVYILRGW-SENDVYWKRPGEKDFRLLVKG----VGAK-YEVHAWKDRFYVLTDE--GAPRQRVFEVDPAKPA 306 (695)
T ss_dssp CTTSCCEEEEEEETT-TEEEEEEECTTCSSCEEEEEC----SSCC-EEEEEETTEEEEEECT--TCTTCEEEEEBTTBCS
T ss_pred CCCCCEEEEEEeCCC-CceEEEEEcCCCCceEEeecC----CCce-EEEEecCCcEEEEECC--CCCCCEEEEEeCCCCC
Confidence 335544455443221 346889998877788877521 1111 2222245665555332 2234579999987654
Q ss_pred ---EEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECC
Q 012184 243 ---WSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK 293 (469)
Q Consensus 243 ---W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~ 293 (469)
|..+...... ..+..+... ++.+++....++ ...+|.+++.
T Consensus 307 ~~~~~~l~~~~~~-------~~l~~~~~~-~~~lv~~~~~dg--~~~l~~~~~~ 350 (695)
T 2bkl_A 307 RASWKEIVPEDSS-------ASLLSVSIV-GGHLSLEYLKDA--TSEVRVATLK 350 (695)
T ss_dssp GGGCEEEECCCSS-------CEEEEEEEE-TTEEEEEEEETT--EEEEEEEETT
T ss_pred ccCCeEEecCCCC-------CeEEEEEEE-CCEEEEEEEECC--EEEEEEEeCC
Confidence 8776432111 111122222 456666655443 3456666653
No 167
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.07 E-value=0.32 Score=54.30 Aligned_cols=194 Identities=10% Similarity=0.021 Sum_probs=91.4
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT 141 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~ 141 (469)
++..++.|+.++ .+..||+.++....+. . ....-.+++...+..++.|+.+ ..+.+||+.++.
T Consensus 1014 dg~~l~s~~~dg------~i~vwd~~~~~~~~~~---~--~~~~v~~~~~~~~~~l~~~~~d------g~v~vwd~~~~~ 1076 (1249)
T 3sfz_A 1014 DGKTLISSSEDS------VIQVWNWQTGDYVFLQ---A--HQETVKDFRLLQDSRLLSWSFD------GTVKVWNVITGR 1076 (1249)
T ss_dssp SSSCEEEECSSS------BEEEEETTTTEEECCB---C--CSSCEEEEEECSSSEEEEEESS------SEEEEEETTTTC
T ss_pred CCCEEEEEcCCC------EEEEEECCCCceEEEe---c--CCCcEEEEEEcCCCcEEEEECC------CcEEEEECCCCc
Confidence 555666666432 3889999998765433 1 1111222233333344555543 348899988776
Q ss_pred EEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEEE
Q 012184 142 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWY 219 (469)
Q Consensus 142 W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~ 219 (469)
-...-. +. ...-.+++...++..++.|+.++ .+.+||+.+..-.. ...........+.+ ++.++
T Consensus 1077 ~~~~~~-~~---~~~v~~~~~s~d~~~l~s~s~d~-----~v~iwd~~~~~~~~-----~l~~h~~~v~~~~~s~dg~~l 1142 (1249)
T 3sfz_A 1077 IERDFT-CH---QGTVLSCAISSDATKFSSTSADK-----TAKIWSFDLLSPLH-----ELKGHNGCVRCSAFSLDGILL 1142 (1249)
T ss_dssp CCEEEE-CC---SSCCCCEEECSSSSSCEEECCSS-----CCCEECSSSSSCSB-----CCCCCSSCEEEEEECSSSSEE
T ss_pred eeEEEc-cc---CCcEEEEEECCCCCEEEEEcCCC-----cEEEEECCCcceee-----eeccCCCcEEEEEECCCCCEE
Confidence 432221 11 11112333334555677776543 46778876554211 11111111122222 56677
Q ss_pred EEecCCCCCCcceEEEEECCCCcEEEe-ccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCC
Q 012184 220 IVGGGDNNNGCQETIVLNMTKLAWSIL-TSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI 297 (469)
Q Consensus 220 v~GG~~~~~~~~d~~~~d~~~~~W~~~-~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w 297 (469)
+.|+.++ .+.+||+.+...... .+.............+..+...+++.+++.+| ..+.+||+.+...
T Consensus 1143 at~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~------g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1143 ATGDDNG-----EIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG------GYLKWWNVATGDS 1210 (1249)
T ss_dssp EEEETTS-----CCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES------SSEEEBCSSSCBC
T ss_pred EEEeCCC-----EEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC------CeEEEEECCCCce
Confidence 7777543 367888876543211 11000000001111223334444455555554 2588888766544
No 168
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.05 E-value=0.29 Score=44.00 Aligned_cols=39 Identities=10% Similarity=0.207 Sum_probs=14.1
Q ss_pred hhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012184 379 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIA 417 (469)
Q Consensus 379 ~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~ 417 (469)
.+++.++..+..++.++.++..++...+..+..++..+.
T Consensus 97 kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~ 135 (256)
T 3na7_A 97 IEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEML 135 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 169
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=94.99 E-value=2.4 Score=44.42 Aligned_cols=170 Identities=14% Similarity=0.127 Sum_probs=84.6
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCC--------CCccCc
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRS--------RKLLND 131 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~--------~~~~~~ 131 (469)
+++.++|+....+. ....++++|+.++........ ... ...+.+ +..||+ +..... ......
T Consensus 173 DG~~la~~~~~~G~-e~~~i~v~dl~tg~~~~~~~~----~~~--~~~~~wspD~~l~~-~~~~~~~~~~~~~~~~~~~~ 244 (741)
T 1yr2_A 173 DGRLLAYSVQDGGS-DWRTVKFVGVADGKPLADELK----WVK--FSGLAWLGNDALLY-SRFAEPKEGQAFQALNYNQT 244 (741)
T ss_dssp TSSEEEEEEEETTC-SEEEEEEEETTTCCEEEEEEE----EEE--SCCCEESTTSEEEE-EECCCC--------CCCCCE
T ss_pred CCCEEEEEEcCCCC-ceEEEEEEECCCCCCCCccCC----Cce--eccEEEECCCEEEE-EEecCcccccccccCCCCCE
Confidence 55555554332221 234699999999987654311 111 111222 323443 332221 112456
Q ss_pred EEEEECCCCeE--EEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCC--c-eEeeeecCCCCCCC
Q 012184 132 VHFLDLETMTW--DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN--E-WSQPEIKGDLVTGR 206 (469)
Q Consensus 132 v~~~d~~t~~W--~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~--~-W~~~~~~~~~p~~r 206 (469)
++++++.+..- ..+. .....+........-.|++.+++.........++++++|+.+. . |..+... ....
T Consensus 245 v~~~~lgt~~~~~~lv~--~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~---~~~~ 319 (741)
T 1yr2_A 245 VWLHRLGTPQSADQPVF--ATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD---LKAQ 319 (741)
T ss_dssp EEEEETTSCGGGCEEEE--CCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS---SSSC
T ss_pred EEEEECCCCchhCEEEe--ccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC---CCce
Confidence 88899876642 1221 1111122223333333554444443332223578999999877 6 8776521 1111
Q ss_pred cceEEEEECCEEEEEecCCCCCCcceEEEEECCC--CcEEEec
Q 012184 207 AGHAGITIDENWYIVGGGDNNNGCQETIVLNMTK--LAWSILT 247 (469)
Q Consensus 207 ~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~--~~W~~~~ 247 (469)
.. .+...++.||+.... ......++++|+.+ ..|..+.
T Consensus 320 ~~-~~~~dg~~l~~~s~~--~~~~~~l~~~d~~~~~~~~~~l~ 359 (741)
T 1yr2_A 320 WD-FVDGVGDQLWFVSGD--GAPLKKIVRVDLSGSTPRFDTVV 359 (741)
T ss_dssp EE-EEEEETTEEEEEECT--TCTTCEEEEEECSSSSCEEEEEE
T ss_pred EE-EEeccCCEEEEEECC--CCCCCEEEEEeCCCCccccEEEe
Confidence 11 223446677776432 22245799999987 5788764
No 170
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=94.96 E-value=3.4 Score=42.88 Aligned_cols=192 Identities=12% Similarity=-0.052 Sum_probs=98.6
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCC-------CCCcceEEEEECCC
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK-------SSDSMIVRFIDLET 88 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~-------~~~~~~~~~~d~~t 88 (469)
.++++|+.+++....... ..+....+...+..||+... ... ......++.+++.+
T Consensus 156 ~i~v~dl~tg~~~~~~~~-----------------~~k~~~~~WsDg~~l~y~~~-~~~~~~~~~~~~~~~~v~~~~lgt 217 (693)
T 3iuj_A 156 EIHLMDVESKQPLETPLK-----------------DVKFSGISWLGNEGFFYSSY-DKPDGSELSARTDQHKVYFHRLGT 217 (693)
T ss_dssp EEEEEETTTCSEEEEEEE-----------------EEESCCCEEETTTEEEEEES-SCCC-------CCCCEEEEEETTS
T ss_pred EEEEEECCCCCCCccccC-----------------CceeccEEEeCCCEEEEEEe-cCcccccccccCCCcEEEEEECCC
Confidence 678888888886554322 12222223333444555432 211 02345688888877
Q ss_pred CeE--EEeecCCCCCC--CCcceEEEE-ECC-EEEEEeccCCCCCccCcEEEEECCCC--eEEEeeeCCCCCCCCCCceE
Q 012184 89 NLC--GVMETSGKVPV--ARGGHSVTL-VGS-RLIIFGGEDRSRKLLNDVHFLDLETM--TWDAVEVTQTPPAPRYDHSA 160 (469)
Q Consensus 89 ~~W--~~~~~~g~~p~--~r~~~~~~~-~~~-~lyi~GG~~~~~~~~~~v~~~d~~t~--~W~~~~~~g~~p~~r~~~~~ 160 (469)
..= ..+. ..+. +....++.. -++ .|++...... ..++++++|+.+. .|..+... .......
T Consensus 218 ~~~~~~~v~---~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~---~~~~i~~~d~~~~~~~~~~l~~~-----~~~~~~~ 286 (693)
T 3iuj_A 218 AQEDDRLVF---GAIPAQHHRYVGATVTEDDRFLLISAANST---SGNRLYVKDLSQENAPLLTVQGD-----LDADVSL 286 (693)
T ss_dssp CGGGCEEEE---SCSGGGCCSEEEEEECTTSCEEEEEEESSS---SCCEEEEEETTSTTCCCEEEECS-----SSSCEEE
T ss_pred CcccceEEE---ecCCCCCeEEEEEEEcCCCCEEEEEEccCC---CCcEEEEEECCCCCCceEEEeCC-----CCceEEE
Confidence 643 1222 1121 111222222 234 4444432221 2468999998776 67777521 1112222
Q ss_pred EEEcCcEEEEEecCCCCcccCcEEEEECCCC---ceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEE
Q 012184 161 ALHANRYLIVFGGCSHSIFFNDLHVLDLQTN---EWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN 237 (469)
Q Consensus 161 ~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~---~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d 237 (469)
....++.||+....+. ....|+.+|+.+. .|..+.. .... .. +....++.|++..-.+ ....++++|
T Consensus 287 ~~~~g~~l~~~t~~~~--~~~~l~~~d~~~~~~~~~~~l~~--~~~~--~~-~~s~~g~~lv~~~~~~---g~~~l~~~d 356 (693)
T 3iuj_A 287 VDNKGSTLYLLTNRDA--PNRRLVTVDAANPGPAHWRDLIP--ERQQ--VL-TVHSGSGYLFAEYMVD---ATARVEQFD 356 (693)
T ss_dssp EEEETTEEEEEECTTC--TTCEEEEEETTSCCGGGCEEEEC--CCSS--CE-EEEEETTEEEEEEEET---TEEEEEEEC
T ss_pred EeccCCEEEEEECCCC--CCCEEEEEeCCCCCccccEEEec--CCCC--EE-EEEEECCEEEEEEEEC---CeeEEEEEE
Confidence 3334677888875432 2457999998764 4877642 1111 12 4445566666553321 245789999
Q ss_pred CCCCcEEEe
Q 012184 238 MTKLAWSIL 246 (469)
Q Consensus 238 ~~~~~W~~~ 246 (469)
+.......+
T Consensus 357 ~~g~~~~~l 365 (693)
T 3iuj_A 357 YEGKRVREV 365 (693)
T ss_dssp TTSCEEEEE
T ss_pred CCCCeeEEe
Confidence 886655554
No 171
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=94.96 E-value=1.3 Score=40.90 Aligned_cols=106 Identities=19% Similarity=0.229 Sum_probs=53.1
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCe--EEEeecCCCCCCCCcceEEEE-----ECCEEEEEeccCCCCCccCcEEE
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVARGGHSVTL-----VGSRLIIFGGEDRSRKLLNDVHF 134 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~-----~~~~lyi~GG~~~~~~~~~~v~~ 134 (469)
++.+++.|+.++ .+..||+.+.. ...+... .....+.-.+++. -++.+++.|+.+ ..+.+
T Consensus 128 ~~~~l~~~~~d~------~i~vwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d------~~i~i 194 (357)
T 3i2n_A 128 GAPEIVTGSRDG------TVKVWDPRQKDDPVANMEPV-QGENKRDCWTVAFGNAYNQEERVVCAGYDN------GDIKL 194 (357)
T ss_dssp CCCEEEEEETTS------CEEEECTTSCSSCSEEECCC-TTSCCCCEEEEEEECCCC-CCCEEEEEETT------SEEEE
T ss_pred CccEEEEEeCCC------eEEEEeCCCCCCcceecccc-CCCCCCceEEEEEEeccCCCCCEEEEEccC------CeEEE
Confidence 455666666432 28888988764 3333210 0011112222221 245666666543 35899
Q ss_pred EECCCCeEEEeeeCCCCCCCCCCceEEEEc---CcEEEEEecCCCCcccCcEEEEECCC
Q 012184 135 LDLETMTWDAVEVTQTPPAPRYDHSAALHA---NRYLIVFGGCSHSIFFNDLHVLDLQT 190 (469)
Q Consensus 135 ~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~---~~~l~v~GG~~~~~~~~~i~~~d~~~ 190 (469)
||+.+..-..... ....-.++.... ++..++.|+.+ ..+.+||+.+
T Consensus 195 ~d~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~ 243 (357)
T 3i2n_A 195 FDLRNMALRWETN-----IKNGVCSLEFDRKDISMNKLVATSLE-----GKFHVFDMRT 243 (357)
T ss_dssp EETTTTEEEEEEE-----CSSCEEEEEESCSSSSCCEEEEEEST-----TEEEEEEEEE
T ss_pred EECccCceeeecC-----CCCceEEEEcCCCCCCCCEEEEECCC-----CeEEEEeCcC
Confidence 9999887543321 111122333322 44566666544 3577888654
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=94.96 E-value=1.4 Score=45.24 Aligned_cols=193 Identities=10% Similarity=-0.020 Sum_probs=97.2
Q ss_pred cceEEEEECCC------CeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCC-C-ccCcEEEEECC-CC---eEE
Q 012184 78 SMIVRFIDLET------NLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSR-K-LLNDVHFLDLE-TM---TWD 143 (469)
Q Consensus 78 ~~~~~~~d~~t------~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~-~-~~~~v~~~d~~-t~---~W~ 143 (469)
...++.+|+.+ +....+...+ . .....+.+ +++.+++....... . ...+++++|+. ++ ...
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~l~~~~----~-~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~ 234 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAVRELSDDA----H-RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTR 234 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGSEESSCSC----S-SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEE
T ss_pred eeEEEEEECCCCccccCCceeEEEecC----C-CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccE
Confidence 35799999988 6655543011 1 11111222 44434443332211 1 13579999998 57 444
Q ss_pred EeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecC-CCCCCCc---ceEEEEE-CCEE
Q 012184 144 AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKG-DLVTGRA---GHAGITI-DENW 218 (469)
Q Consensus 144 ~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~-~~p~~r~---~~~~~~~-~~~l 218 (469)
.+... ............|+++|+.+..+. ...+|++|+.+..+..+.... ....+.+ ....+.. ++.+
T Consensus 235 ~l~~~----~~~~~~~~~~spdg~l~~~~~~~~---~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~ 307 (662)
T 3azo_A 235 TLLGG----PEEAIAQAEWAPDGSLIVATDRTG---WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLI 307 (662)
T ss_dssp EEEEE----TTBCEEEEEECTTSCEEEEECTTS---SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCE
T ss_pred EeCCC----CCceEcceEECCCCeEEEEECCCC---CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEE
Confidence 44321 011122233333666776665432 247999999888887764211 0001111 1123333 5666
Q ss_pred EEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEE-EEcCCcEEEEEeccCCCCCceEEEEECCCCCC
Q 012184 219 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSA-IIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI 297 (469)
Q Consensus 219 ~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~-~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w 297 (469)
++.+.. ....+|.+|+.+.....+.... + ....+ ..+++..+|+.++.+ ....+|.+|+.+...
T Consensus 308 ~~~~~~----~~~~l~~~d~~~~~~~~l~~~~--------~-~~~~~~s~~~~~~~~~~~~~~--~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 308 AVVHGK----GAAVLGILDPESGELVDAAGPW--------T-EWAATLTVSGTRAVGVAASPR--TAYEVVELDTVTGRA 372 (662)
T ss_dssp EEEEBS----SSCEEEEEETTTTEEEECCSSC--------C-EEEEEEEEETTEEEEEEEETT--EEEEEEEEETTTCCE
T ss_pred EEEEEc----CccEEEEEECCCCcEEEecCCC--------C-eEEEEEecCCCEEEEEEcCCC--CCCEEEEEECCCCce
Confidence 666543 3467999999888766653211 1 11122 344444444444422 245688888765543
No 173
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=94.95 E-value=2 Score=38.77 Aligned_cols=191 Identities=11% Similarity=-0.004 Sum_probs=97.6
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEE-ECCEEEEEeccCCCCCccCcEEEEECCCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETM 140 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyi~GG~~~~~~~~~~v~~~d~~t~ 140 (469)
++.||+.+... ..+++||+.++ ...+.. +... -.+++. -++.||+.... .+.+++||+.++
T Consensus 39 g~~l~~~~~~~------~~i~~~~~~~~-~~~~~~----~~~~-~~~l~~~~dg~l~v~~~~------~~~i~~~d~~~g 100 (296)
T 3e5z_A 39 RSAVIFSDVRQ------NRTWAWSDDGQ-LSPEMH----PSHH-QNGHCLNKQGHLIACSHG------LRRLERQREPGG 100 (296)
T ss_dssp GTEEEEEEGGG------TEEEEEETTSC-EEEEES----SCSS-EEEEEECTTCCEEEEETT------TTEEEEECSTTC
T ss_pred CCEEEEEeCCC------CEEEEEECCCC-eEEEEC----CCCC-cceeeECCCCcEEEEecC------CCeEEEEcCCCC
Confidence 44588887543 24999999988 666652 1111 122332 24677765421 245999999888
Q ss_pred eEEEeeeCCCCCCCCCCceEEEEcCcEEEEE----ecCC--------CCcccCcEEEEECCCCceEeeeecCCCCCCCcc
Q 012184 141 TWDAVEVTQTPPAPRYDHSAALHANRYLIVF----GGCS--------HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAG 208 (469)
Q Consensus 141 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~----GG~~--------~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~ 208 (469)
+...+...........-..++...++.+|+. |... .......+++|++. .+...+. .... ..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~--~~~~---~~ 174 (296)
T 3e5z_A 101 EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI--RDRV---KP 174 (296)
T ss_dssp CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE--CCCS---SE
T ss_pred cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEee--cCCC---CC
Confidence 8776532101011111223444456778886 3311 01113579999987 5554432 1111 11
Q ss_pred eEEEEE-CCEEEEEecCCCCCCcceEEEEECC-CCcE-EEec--cCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCC
Q 012184 209 HAGITI-DENWYIVGGGDNNNGCQETIVLNMT-KLAW-SILT--SVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKY 283 (469)
Q Consensus 209 ~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~-~~~W-~~~~--~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~ 283 (469)
..++.. ++++++.... .+.+++||+. +... .... ......| . .+..++++.|++.. +
T Consensus 175 ~gi~~s~dg~~lv~~~~-----~~~i~~~~~~~~g~~~~~~~~~~~~~~~p-----~---~i~~d~~G~l~v~~--~--- 236 (296)
T 3e5z_A 175 NGLAFLPSGNLLVSDTG-----DNATHRYCLNARGETEYQGVHFTVEPGKT-----D---GLRVDAGGLIWASA--G--- 236 (296)
T ss_dssp EEEEECTTSCEEEEETT-----TTEEEEEEECSSSCEEEEEEEECCSSSCC-----C---SEEEBTTSCEEEEE--T---
T ss_pred ccEEECCCCCEEEEeCC-----CCeEEEEEECCCCcCcCCCeEeeCCCCCC-----C---eEEECCCCCEEEEc--C---
Confidence 233333 4555544332 2478899986 4554 2111 1111111 1 13345566777766 1
Q ss_pred CceEEEEECCCC
Q 012184 284 NNEVFVMRLKPR 295 (469)
Q Consensus 284 ~~~~~~~d~~~~ 295 (469)
+.+++||++..
T Consensus 237 -~~v~~~~~~g~ 247 (296)
T 3e5z_A 237 -DGVHVLTPDGD 247 (296)
T ss_dssp -TEEEEECTTSC
T ss_pred -CeEEEECCCCC
Confidence 35888988643
No 174
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=94.92 E-value=2.9 Score=40.47 Aligned_cols=160 Identities=8% Similarity=-0.017 Sum_probs=80.5
Q ss_pred CEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeE
Q 012184 63 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW 142 (469)
Q Consensus 63 ~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W 142 (469)
+.+++.|+.+. .+.+||+.++........+ ........+.. ++.+++.|+.+ ..+.+||+.+++.
T Consensus 210 ~~~l~s~~~d~------~i~vwd~~~~~~~~~~~~~--h~~~v~~~~~s-d~~~l~s~~~d------~~v~vwd~~~~~~ 274 (450)
T 2vdu_B 210 HQFIITSDRDE------HIKISHYPQCFIVDKWLFG--HKHFVSSICCG-KDYLLLSAGGD------DKIFAWDWKTGKN 274 (450)
T ss_dssp CEEEEEEETTS------CEEEEEESCTTCEEEECCC--CSSCEEEEEEC-STTEEEEEESS------SEEEEEETTTCCE
T ss_pred CcEEEEEcCCC------cEEEEECCCCceeeeeecC--CCCceEEEEEC-CCCEEEEEeCC------CeEEEEECCCCcE
Confidence 77888877542 3888888777643332111 11111222222 66677777643 3588999988775
Q ss_pred EEeeeCCC----C-----------------CCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEEC--CC-CceEeeee
Q 012184 143 DAVEVTQT----P-----------------PAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDL--QT-NEWSQPEI 198 (469)
Q Consensus 143 ~~~~~~g~----~-----------------p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~--~~-~~W~~~~~ 198 (469)
...-..+. . +....-..+....++.++++++.. .+.+.+|++ .+ ..+..+..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~----d~~i~iw~~~~~~~~~l~~~~~ 350 (450)
T 2vdu_B 275 LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA----TKCIIILEMSEKQKGDLALKQI 350 (450)
T ss_dssp EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT----CSEEEEEEECSSSTTCEEEEEE
T ss_pred eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC----CCeEEEEEeccCCCCceeeccE
Confidence 43322110 0 011111222223344344444322 146888888 33 34444432
Q ss_pred cCCCCCCCcceEEEEECCEEEEEecCCCC----CCcceEEEEECCCCcEE
Q 012184 199 KGDLVTGRAGHAGITIDENWYIVGGGDNN----NGCQETIVLNMTKLAWS 244 (469)
Q Consensus 199 ~~~~p~~r~~~~~~~~~~~l~v~GG~~~~----~~~~d~~~~d~~~~~W~ 244 (469)
. +....-.+++...+.+++..+.... ...-.+|.++..++.|.
T Consensus 351 ~---~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 351 I---TFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp E---ECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred e---ccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeEE
Confidence 1 1112233455556777777654321 22346788888888886
No 175
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=94.92 E-value=2.9 Score=40.54 Aligned_cols=66 Identities=14% Similarity=0.164 Sum_probs=36.9
Q ss_pred CEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCce
Q 012184 114 SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW 193 (469)
Q Consensus 114 ~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W 193 (469)
+.+++.|+.+ ..|.+||+.+.........+. ...-.+++.. ++.+++.|+.+ +.|.+||+.+.+.
T Consensus 210 ~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~h---~~~v~~~~~s-d~~~l~s~~~d-----~~v~vwd~~~~~~ 274 (450)
T 2vdu_B 210 HQFIITSDRD------EHIKISHYPQCFIVDKWLFGH---KHFVSSICCG-KDYLLLSAGGD-----DKIFAWDWKTGKN 274 (450)
T ss_dssp CEEEEEEETT------SCEEEEEESCTTCEEEECCCC---SSCEEEEEEC-STTEEEEEESS-----SEEEEEETTTCCE
T ss_pred CcEEEEEcCC------CcEEEEECCCCceeeeeecCC---CCceEEEEEC-CCCEEEEEeCC-----CeEEEEECCCCcE
Confidence 6677777654 348889988765433211111 1111222223 55566667644 4688999887764
Q ss_pred E
Q 012184 194 S 194 (469)
Q Consensus 194 ~ 194 (469)
.
T Consensus 275 ~ 275 (450)
T 2vdu_B 275 L 275 (450)
T ss_dssp E
T ss_pred e
Confidence 3
No 176
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=94.92 E-value=2.1 Score=38.81 Aligned_cols=230 Identities=10% Similarity=0.015 Sum_probs=111.8
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-C-CEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-G-TKLLILGGHYKKSSDSMIVRFIDLETNLCGV 93 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~-~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~ 93 (469)
.+.+||+.++++..+...... .....-++++.. + +.||+.... +.+++||+. ++...
T Consensus 47 ~i~~~d~~~g~~~~~~~~~~~-------------~~~~~~~~i~~~~~~g~l~v~~~~-------~~l~~~d~~-g~~~~ 105 (314)
T 1pjx_A 47 EILRIDLKTGKKTVICKPEVN-------------GYGGIPAGCQCDRDANQLFVADMR-------LGLLVVQTD-GTFEE 105 (314)
T ss_dssp EEEEECTTTCCEEEEECCEET-------------TEECCEEEEEECSSSSEEEEEETT-------TEEEEEETT-SCEEE
T ss_pred EEEEEeCCCCcEEEEEecccC-------------CCCCCCceEEEecCCCcEEEEECC-------CCEEEEeCC-CCEEE
Confidence 688999988888765431000 001112333333 4 788887531 248999998 77766
Q ss_pred e-ecCCCCCCCCcceEEEEE-CCEEEEEeccC---------CCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEE
Q 012184 94 M-ETSGKVPVARGGHSVTLV-GSRLIIFGGED---------RSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAAL 162 (469)
Q Consensus 94 ~-~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~---------~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~ 162 (469)
+ ...........-+.++.- ++.+|+..... ........+++||+. .+...+... ...+ ..++.
T Consensus 106 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~--~~~~---~~i~~ 179 (314)
T 1pjx_A 106 IAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA--FQFP---NGIAV 179 (314)
T ss_dssp CCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE--ESSE---EEEEE
T ss_pred EEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC--CCCc---ceEEE
Confidence 5 321111111111223322 46788765322 111123579999987 665544321 1111 23333
Q ss_pred E----cCc-EEEEEecCCCCcccCcEEEEECC-CCceEeeeecCCCCCC--CcceEEEEE-CCEEEEEecCCCCCCcceE
Q 012184 163 H----ANR-YLIVFGGCSHSIFFNDLHVLDLQ-TNEWSQPEIKGDLVTG--RAGHAGITI-DENWYIVGGGDNNNGCQET 233 (469)
Q Consensus 163 ~----~~~-~l~v~GG~~~~~~~~~i~~~d~~-~~~W~~~~~~~~~p~~--r~~~~~~~~-~~~l~v~GG~~~~~~~~d~ 233 (469)
. .++ .+|+.... .+.+++||+. ++...........+.. .....++.. ++.+|+.... .+.+
T Consensus 180 ~~~~d~dg~~l~v~~~~-----~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~-----~~~i 249 (314)
T 1pjx_A 180 RHMNDGRPYQLIVAETP-----TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-----SSHI 249 (314)
T ss_dssp EECTTSCEEEEEEEETT-----TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-----TTEE
T ss_pred ecccCCCCCEEEEEECC-----CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC-----CCEE
Confidence 3 455 56775432 2568899876 4444322111111111 112233333 4677776421 2368
Q ss_pred EEEECCCCcE-EEeccCCCCCCCCCCCcceEEEEEcCC-cEEEEEeccCCCCCceEEEEECCCC
Q 012184 234 IVLNMTKLAW-SILTSVKGRNPLASEGLSVCSAIIEGE-HHLVAFGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 234 ~~~d~~~~~W-~~~~~~~~~~p~~r~~~s~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~d~~~~ 295 (469)
.+||+.+... ..+. .+. .....+..+++ ..||+....+ +.+++|++...
T Consensus 250 ~~~d~~~g~~~~~~~-~~~--------~~~~~i~~~~dg~~l~v~~~~~----~~l~~~~~~~~ 300 (314)
T 1pjx_A 250 EVFGPDGGQPKMRIR-CPF--------EKPSNLHFKPQTKTIFVTEHEN----NAVWKFEWQRN 300 (314)
T ss_dssp EEECTTCBSCSEEEE-CSS--------SCEEEEEECTTSSEEEEEETTT----TEEEEEECSSC
T ss_pred EEEcCCCCcEeEEEe-CCC--------CCceeEEECCCCCEEEEEeCCC----CeEEEEeCCCC
Confidence 8999874432 2221 111 11222333443 4577765432 36999998654
No 177
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=94.88 E-value=4.3 Score=42.14 Aligned_cols=114 Identities=17% Similarity=0.100 Sum_probs=62.0
Q ss_pred ceEEEEccCCc--eeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe--E
Q 012184 16 VVMVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--C 91 (469)
Q Consensus 16 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W 91 (469)
.++.+|..+++ |+.-...... .. ..........+.++.++.||+... ...++.+|..|++ |
T Consensus 81 ~v~AlD~~tG~~~W~~~~~~~~~------~~--~~~~~~~~~~~~~~~~g~v~v~~~-------dg~l~AlDa~TG~~~W 145 (689)
T 1yiq_A 81 VVYALDARDGRLIWKYDPQSDRH------RA--GEACCDAVNRGVAVWKGKVYVGVL-------DGRLEAIDAKTGQRAW 145 (689)
T ss_dssp CEEEEETTTCCEEEEECCCCCGG------GG--GGCTTCSCCCCCEEETTEEEEECT-------TSEEEEEETTTCCEEE
T ss_pred eEEEEECCCCceeEEEcCCCCcc------cc--ccccccCCCCccEEECCEEEEEcc-------CCEEEEEECCCCCEee
Confidence 68999998764 8764432110 00 000000112234567888888642 1349999999886 8
Q ss_pred EEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEe
Q 012184 92 GVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAV 145 (469)
Q Consensus 92 ~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~ 145 (469)
+.-.............+.++.++.+|+- ...........++.||+.|++ |+.-
T Consensus 146 ~~~~~~~~~~~~~~~~sP~v~~g~v~vg-~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 146 SVDTRADHKRSYTITGAPRVVNGKVVIG-NGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp EEECCSCTTSCCBCCSCCEEETTEEEEC-CBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred eecCcCCCCCCccccCCcEEECCEEEEE-eCCCccCCCCEEEEEECCCCcEEEEec
Confidence 7654211111112222335568887763 222111134579999999876 8764
No 178
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.85 E-value=0.38 Score=39.39 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=11.4
Q ss_pred hhhcchhhHHHHHHHHHHHHHHhh
Q 012184 383 EVNSTHSELSKELSSVQGQLVAER 406 (469)
Q Consensus 383 ~~~~~~~e~~~el~~~~~~l~~~~ 406 (469)
.++.....+++++..++.+|.+++
T Consensus 59 ~L~~~k~~Leke~~~LQa~L~qEr 82 (168)
T 3o0z_A 59 ILENSKSQTDKDYYQLQAILEAER 82 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555555553
No 179
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.76 E-value=2.6 Score=46.93 Aligned_cols=190 Identities=9% Similarity=-0.020 Sum_probs=90.2
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE----CCEEEEEeccCCCCCccCcEEEEEC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV----GSRLIIFGGEDRSRKLLNDVHFLDL 137 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~----~~~lyi~GG~~~~~~~~~~v~~~d~ 137 (469)
++.+++.|+.+ ..+.++|+.+++....-. . ......++.+ ++.+++.|+.+ ..+.+||+
T Consensus 668 ~~~~l~s~~~d------~~v~vwd~~~~~~~~~~~---~--~~~~v~~~~~~~~~~~~~l~sg~~d------~~v~vwd~ 730 (1249)
T 3sfz_A 668 DDSYIATCSAD------KKVKIWDSATGKLVHTYD---E--HSEQVNCCHFTNKSNHLLLATGSND------FFLKLWDL 730 (1249)
T ss_dssp TSSEEEEEETT------SEEEEEETTTCCEEEEEE---C--CSSCEEEEEECSSSSCCEEEEEETT------SCEEEEET
T ss_pred CCCEEEEEeCC------CeEEEEECCCCceEEEEc---C--CCCcEEEEEEecCCCceEEEEEeCC------CeEEEEEC
Confidence 55666666633 238999998887544321 1 1122223333 22355555533 24889999
Q ss_pred CCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCC------CCC---CCcc
Q 012184 138 ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGD------LVT---GRAG 208 (469)
Q Consensus 138 ~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~------~p~---~r~~ 208 (469)
.+......-. + ....-.+++...++..++.|+.+ ..+.++|+.+..-........ .+. ....
T Consensus 731 ~~~~~~~~~~-~---h~~~v~~~~~sp~~~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 801 (1249)
T 3sfz_A 731 NQKECRNTMF-G---HTNSVNHCRFSPDDELLASCSAD-----GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIV 801 (1249)
T ss_dssp TSSSEEEEEC-C---CSSCEEEEEECSSTTEEEEEESS-----SEEEEEEGGGTEEEEEEECCCCC--------CCCCCB
T ss_pred CCcchhheec-C---CCCCEEEEEEecCCCEEEEEECC-----CeEEEEeCCCCcccceecccccccccCCccccccceE
Confidence 8877543321 1 11111223333355566666654 357888887664322111000 000 0011
Q ss_pred eEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceE
Q 012184 209 HAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEV 287 (469)
Q Consensus 209 ~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~ 287 (469)
.+++.. ++..+++++ .+.+.+||+.+............ ..+..+...+++.++++|+.++ .+
T Consensus 802 ~~~~~s~dg~~l~~~~------~~~v~~~d~~~~~~~~~~~~~~~-------~~v~~~~~sp~~~~l~~~~~dg----~v 864 (1249)
T 3sfz_A 802 KCCSWSADGDKIIVAA------KNKVLLFDIHTSGLLAEIHTGHH-------STIQYCDFSPYDHLAVIALSQY----CV 864 (1249)
T ss_dssp CCCCBCTTSSEEEEEE------TTEEEEEETTTCCEEEEEECSSS-------SCCCEEEECSSTTEEEEECSSS----CE
T ss_pred EEEEECCCCCEEEEEc------CCcEEEEEecCCCceeEEcCCCC-------CceEEEEEcCCCCEEEEEeCCC----eE
Confidence 111111 345555554 24688999887765443211111 1112233344556667776554 25
Q ss_pred EEEECCC
Q 012184 288 FVMRLKP 294 (469)
Q Consensus 288 ~~~d~~~ 294 (469)
.+||+.+
T Consensus 865 ~vwd~~~ 871 (1249)
T 3sfz_A 865 ELWNIDS 871 (1249)
T ss_dssp EEEETTT
T ss_pred EEEEcCC
Confidence 5666543
No 180
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=94.75 E-value=3.5 Score=42.80 Aligned_cols=193 Identities=10% Similarity=-0.017 Sum_probs=87.0
Q ss_pred ceEEEEECCC-CeEEEeecCCCCCCCCcceEE-EEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCC
Q 012184 79 MIVRFIDLET-NLCGVMETSGKVPVARGGHSV-TLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY 156 (469)
Q Consensus 79 ~~~~~~d~~t-~~W~~~~~~g~~p~~r~~~~~-~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~ 156 (469)
..++.+|+.+ +.-..+... .+....-..+ ..-+..|++...... . ....++++|+.+++...+........-..
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~pDg~~l~~~~~~~~-~-~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 338 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLG--KEQDIYLARVNWRDPQHLSFQRQSRD-Q-KKLDLVEVTLASNQQRVLAHETSPTWVPL 338 (741)
T ss_dssp EEEEEECSSTTCCCEEECCC--SCSSEEEEEEEEEETTEEEEEEEETT-S-SEEEEEEEETTTCCEEEEEEEECSSCCCC
T ss_pred eEEEEEECCCCCceEEecCC--CCcceEEEEEEeCCCCEEEEEEeccc-C-CeEEEEEEECCCCceEEEEEcCCCCcCCc
Confidence 3688899988 775554321 0111111111 122334554432121 1 25679999999988776643211000001
Q ss_pred CceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEE-EE-CC-EEEEEecCCCCCCcceE
Q 012184 157 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI-TI-DE-NWYIVGGGDNNNGCQET 233 (469)
Q Consensus 157 ~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~-~~-~~-~l~v~GG~~~~~~~~d~ 233 (469)
...+....|+++++.++.++ ...+|.+|+... ...+.. + .......+ .. ++ .|++.+. ........+
T Consensus 339 ~~~~~~spdg~~~~~~~~~g---~~~l~~~~~~~~-~~~l~~-~----~~~v~~~~~~s~dg~~l~~~~~-~~~~~~~~l 408 (741)
T 2ecf_A 339 HNSLRFLDDGSILWSSERTG---FQHLYRIDSKGK-AAALTH-G----NWSVDELLAVDEKAGLAYFRAG-IESARESQI 408 (741)
T ss_dssp CSCCEECTTSCEEEEECTTS---SCEEEEECSSSC-EEESCC-S----SSCEEEEEEEETTTTEEEEEEC-SSCTTCBEE
T ss_pred CCceEECCCCeEEEEecCCC---ccEEEEEcCCCC-eeeeee-c----ceEEEeEeEEeCCCCEEEEEEe-CCCCceEEE
Confidence 11223333555666554432 357888887665 444421 1 11111222 22 44 4554443 222224457
Q ss_pred EEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184 234 IVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 234 ~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~ 295 (469)
|..++....-..+.. . .+. ..+...+++..+++...+.....++++++....
T Consensus 409 ~~~~~~g~~~~~l~~----~----~~~--~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 409 YAVPLQGGQPQRLSK----A----PGM--HSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp EEEETTCCCCEECCC----S----CSE--EEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred EEEEcCCCCeeeccc----C----CCc--eEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 777765443333322 0 111 123333433344443333333456777776543
No 181
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=94.71 E-value=2.5 Score=38.70 Aligned_cols=197 Identities=11% Similarity=0.039 Sum_probs=89.8
Q ss_pred CCE-EEEEccccCCCCCcceEEEEEC-CCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCC
Q 012184 62 GTK-LLILGGHYKKSSDSMIVRFIDL-ETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 62 ~~~-iy~~GG~~~~~~~~~~~~~~d~-~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
++. +++.|+.++ .+..||+ .++....+.. .+....-.+++...+.+++.|+.+ ..+.+||+.+
T Consensus 67 ~~~~~l~~~~~dg------~i~~wd~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~l~s~~~d------~~i~iwd~~~ 131 (342)
T 1yfq_A 67 NTDLQIYVGTVQG------EILKVDLIGSPSFQALTN---NEANLGICRICKYGDDKLIAASWD------GLIEVIDPRN 131 (342)
T ss_dssp SSSEEEEEEETTS------CEEEECSSSSSSEEECBS---CCCCSCEEEEEEETTTEEEEEETT------SEEEEECHHH
T ss_pred CCCcEEEEEcCCC------eEEEEEeccCCceEeccc---cCCCCceEEEEeCCCCEEEEEcCC------CeEEEEcccc
Confidence 566 667766432 3899999 8887655541 001111122222224555566543 3477887654
Q ss_pred Ce-------EEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCC-Cc--eEeeeecCCCCCCCcce
Q 012184 140 MT-------WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT-NE--WSQPEIKGDLVTGRAGH 209 (469)
Q Consensus 140 ~~-------W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~-~~--W~~~~~~~~~p~~r~~~ 209 (469)
.. ...+. ....+.. ...+.+..+. ++.|+.+ ..+.+||+.+ .. ..... .+....-.
T Consensus 132 ~~~~~~~~~~~~~~---~~~~~~~-v~~~~~~~~~-l~~~~~d-----~~i~i~d~~~~~~~~~~~~~----~~~~~~i~ 197 (342)
T 1yfq_A 132 YGDGVIAVKNLNSN---NTKVKNK-IFTMDTNSSR-LIVGMNN-----SQVQWFRLPLCEDDNGTIEE----SGLKYQIR 197 (342)
T ss_dssp HTTBCEEEEESCSS---SSSSCCC-EEEEEECSSE-EEEEEST-----TEEEEEESSCCTTCCCEEEE----CSCSSCEE
T ss_pred cccccccccCCeee---EEeeCCc-eEEEEecCCc-EEEEeCC-----CeEEEEECCccccccceeee----cCCCCcee
Confidence 00 11111 1111111 2223343444 5555433 4689999887 43 22221 11112222
Q ss_pred EEEEE--CCEEEEEecCCCCCCcceEEEEECCCC-------cEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccC
Q 012184 210 AGITI--DENWYIVGGGDNNNGCQETIVLNMTKL-------AWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN 280 (469)
Q Consensus 210 ~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~-------~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~ 280 (469)
+++.. ++.++++|+.++ .+.++|.... .-..+..........-....+..+...+++.+++.|+.+
T Consensus 198 ~i~~~~~~~~~l~~~~~dg-----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 272 (342)
T 1yfq_A 198 DVALLPKEQEGYACSSIDG-----RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD 272 (342)
T ss_dssp EEEECSGGGCEEEEEETTS-----EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT
T ss_pred EEEECCCCCCEEEEEecCC-----cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC
Confidence 33333 356777776432 3444444322 111111111000000001234444555556677778765
Q ss_pred CCCCceEEEEECCCCC
Q 012184 281 GKYNNEVFVMRLKPRD 296 (469)
Q Consensus 281 ~~~~~~~~~~d~~~~~ 296 (469)
+ .+.+||+.+..
T Consensus 273 g----~i~vwd~~~~~ 284 (342)
T 1yfq_A 273 G----IISCWNLQTRK 284 (342)
T ss_dssp S----CEEEEETTTTE
T ss_pred c----eEEEEcCccHh
Confidence 5 48888887553
No 182
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=94.69 E-value=3 Score=39.55 Aligned_cols=198 Identities=16% Similarity=0.114 Sum_probs=92.1
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
++..++.|+.+. .+..||+.++.-...- .... ....++.+ ++..++.|+.+ ..+.+||+.+
T Consensus 134 dg~~l~s~~~d~------~i~iwd~~~~~~~~~~---~~h~--~~v~~~~~~p~~~~l~s~s~d------~~v~iwd~~~ 196 (393)
T 1erj_A 134 DGKFLATGAEDR------LIRIWDIENRKIVMIL---QGHE--QDIYSLDYFPSGDKLVSGSGD------RTVRIWDLRT 196 (393)
T ss_dssp TSSEEEEEETTS------CEEEEETTTTEEEEEE---CCCS--SCEEEEEECTTSSEEEEEETT------SEEEEEETTT
T ss_pred CCCEEEEEcCCC------eEEEEECCCCcEEEEE---ccCC--CCEEEEEEcCCCCEEEEecCC------CcEEEEECCC
Confidence 566677776432 3889999888654332 1111 11122223 34555566543 3488899998
Q ss_pred CeEEEeeeCCCCCCCCCCceEEEEc-CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCC-CCCC-C-cceEEEEE-
Q 012184 140 MTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGD-LVTG-R-AGHAGITI- 214 (469)
Q Consensus 140 ~~W~~~~~~g~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~-~p~~-r-~~~~~~~~- 214 (469)
......... .....+++... ++.+++.|+.+ ..+.+||+.+..-........ .... . .-.+++..
T Consensus 197 ~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~s~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~ 266 (393)
T 1erj_A 197 GQCSLTLSI-----EDGVTTVAVSPGDGKYIAAGSLD-----RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR 266 (393)
T ss_dssp TEEEEEEEC-----SSCEEEEEECSTTCCEEEEEETT-----SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT
T ss_pred CeeEEEEEc-----CCCcEEEEEECCCCCEEEEEcCC-----CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC
Confidence 876443211 11112222222 56677777755 358889988765432110000 0011 1 11122222
Q ss_pred CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCC--CCCCCCCCCcc--eEEEEEcCCcEEEEEeccCCCCCceEEEE
Q 012184 215 DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVK--GRNPLASEGLS--VCSAIIEGEHHLVAFGGYNGKYNNEVFVM 290 (469)
Q Consensus 215 ~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~--~~~p~~r~~~s--~~~~~~~~~~~l~v~GG~~~~~~~~~~~~ 290 (469)
++.+++.|+.+ ..+.+||+.+..-......+ ........+|. +..+...+++.+++.|+.++ .+.+|
T Consensus 267 ~g~~l~s~s~d-----~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~----~v~iw 337 (393)
T 1erj_A 267 DGQSVVSGSLD-----RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR----GVLFW 337 (393)
T ss_dssp TSSEEEEEETT-----SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS----EEEEE
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCC----eEEEE
Confidence 45677777643 24677777543211100000 00000001121 22333444566777787665 47888
Q ss_pred ECCCC
Q 012184 291 RLKPR 295 (469)
Q Consensus 291 d~~~~ 295 (469)
|+.+.
T Consensus 338 d~~~~ 342 (393)
T 1erj_A 338 DKKSG 342 (393)
T ss_dssp ETTTC
T ss_pred ECCCC
Confidence 87654
No 183
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=94.66 E-value=2.4 Score=38.28 Aligned_cols=92 Identities=10% Similarity=0.035 Sum_probs=46.6
Q ss_pred CcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCC
Q 012184 181 NDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASE 258 (469)
Q Consensus 181 ~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~ 258 (469)
..+.++|..+..-..... ...+ ...++.. ++.+++.+|... ..+.+||+.+..- +..+.+..
T Consensus 221 ~~i~lwd~~~~~~~~~~~---~~~~--v~~~~~~~~~~~~~~~sg~~d----~~i~iwd~~~~~~--~~~l~gH~----- 284 (318)
T 4ggc_A 221 RHIRIWNVCSGACLSAVD---AHSQ--VCSILWSPHYKELISGHGFAQ----NQLVIWKYPTMAK--VAELKGHT----- 284 (318)
T ss_dssp CEEEEEETTTCCEEEEEE---CSSC--EEEEEEETTTTEEEEEECTTT----CCEEEEETTTCCE--EEEECCCS-----
T ss_pred CEEEEEeccccccccccc---ceee--eeeeeecccccceEEEEEcCC----CEEEEEECCCCcE--EEEEcCCC-----
Confidence 357788877665443321 1111 1122222 345555555322 3588899877653 22332221
Q ss_pred CcceEEEEEcCCcEEEEEeccCCCCCceEEEEECC
Q 012184 259 GLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK 293 (469)
Q Consensus 259 ~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~ 293 (469)
..+..+...+++.+++.||.++. +.++|+.
T Consensus 285 -~~V~~l~~spdg~~l~S~s~D~~----v~iWd~~ 314 (318)
T 4ggc_A 285 -SRVLSLTMSPDGATVASAAADET----LRLWRCF 314 (318)
T ss_dssp -SCEEEEEECTTSSCEEEEETTTE----EEEECCS
T ss_pred -CCEEEEEEcCCCCEEEEEecCCe----EEEEECC
Confidence 12333444556677888887663 6666653
No 184
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=94.59 E-value=2.9 Score=43.75 Aligned_cols=151 Identities=11% Similarity=0.046 Sum_probs=78.7
Q ss_pred cceEEEEECCCCeE--EEeecCCCCCCCCcceEEEE-ECC-EEEEEeccCCCCCccCcEEEEECCCC--e-EEEeeeCCC
Q 012184 78 SMIVRFIDLETNLC--GVMETSGKVPVARGGHSVTL-VGS-RLIIFGGEDRSRKLLNDVHFLDLETM--T-WDAVEVTQT 150 (469)
Q Consensus 78 ~~~~~~~d~~t~~W--~~~~~~g~~p~~r~~~~~~~-~~~-~lyi~GG~~~~~~~~~~v~~~d~~t~--~-W~~~~~~g~ 150 (469)
...++.+++.+..- ..+. . ....+....+... -++ .|++....... ..++++++|+.+. . |..+...
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~-~-~~~~~~~~~~~~~SpDG~~l~~~~~~~~~--~~~~l~~~d~~~~~~~~~~~l~~~-- 315 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVF-A-TPELPKRGHGASVSSDGRWVVITSSEGTD--PVNTVHVARVTNGKIGPVTALIPD-- 315 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEE-C-CTTCTTCEEEEEECTTSCEEEEEEECTTC--SCCEEEEEEEETTEECCCEEEECS--
T ss_pred CCEEEEEECCCCchhCEEEe-c-cCCCCeEEEEEEECCCCCEEEEEEEccCC--CcceEEEEECCCCCCcccEEecCC--
Confidence 34588888877652 1222 1 1111111222222 244 45544432211 3678999999887 6 7777521
Q ss_pred CCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCC--CceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCC
Q 012184 151 PPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT--NEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN 228 (469)
Q Consensus 151 ~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~--~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~ 228 (469)
.. .....+..+++.||+....+ .....++++|+.+ ..|..+.. .... ....+...++.+++....++
T Consensus 316 -~~--~~~~~~~~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~l~~--~~~~--~l~~~~~~~~~lv~~~~~dg-- 384 (741)
T 1yr2_A 316 -LK--AQWDFVDGVGDQLWFVSGDG--APLKKIVRVDLSGSTPRFDTVVP--ESKD--NLESVGIAGNRLFASYIHDA-- 384 (741)
T ss_dssp -SS--SCEEEEEEETTEEEEEECTT--CTTCEEEEEECSSSSCEEEEEEC--CCSS--EEEEEEEEBTEEEEEEEETT--
T ss_pred -CC--ceEEEEeccCCEEEEEECCC--CCCCEEEEEeCCCCccccEEEec--CCCC--eEEEEEEECCEEEEEEEECC--
Confidence 11 11222233466677765432 2235799999987 57887652 1111 11223344777777654322
Q ss_pred CcceEEEEECCCCcEEEe
Q 012184 229 GCQETIVLNMTKLAWSIL 246 (469)
Q Consensus 229 ~~~d~~~~d~~~~~W~~~ 246 (469)
...+|.+|+....-..+
T Consensus 385 -~~~l~~~~~~g~~~~~l 401 (741)
T 1yr2_A 385 -KSQVLAFDLDGKPAGAV 401 (741)
T ss_dssp -EEEEEEEETTSCEEEEC
T ss_pred -EEEEEEEeCCCCceeec
Confidence 45789999865544443
No 185
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=94.53 E-value=3.3 Score=39.28 Aligned_cols=152 Identities=16% Similarity=0.115 Sum_probs=77.8
Q ss_pred CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc
Q 012184 113 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE 192 (469)
Q Consensus 113 ~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~ 192 (469)
++++++.|+.+. .+.+||+.+.+-...- .+ ....-.++....++..++.|+.+ ..+.++|+.+..
T Consensus 134 dg~~l~s~~~d~------~i~iwd~~~~~~~~~~-~~---h~~~v~~~~~~p~~~~l~s~s~d-----~~v~iwd~~~~~ 198 (393)
T 1erj_A 134 DGKFLATGAEDR------LIRIWDIENRKIVMIL-QG---HEQDIYSLDYFPSGDKLVSGSGD-----RTVRIWDLRTGQ 198 (393)
T ss_dssp TSSEEEEEETTS------CEEEEETTTTEEEEEE-CC---CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTE
T ss_pred CCCEEEEEcCCC------eEEEEECCCCcEEEEE-cc---CCCCEEEEEEcCCCCEEEEecCC-----CcEEEEECCCCe
Confidence 456677776543 4889999888654332 11 11112233333355566666654 458889998876
Q ss_pred eEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCC
Q 012184 193 WSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGE 270 (469)
Q Consensus 193 W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~ 270 (469)
...... ......+++.. ++.+++.|+.++ .+.+||+.+..-...-...... .......+..+...++
T Consensus 199 ~~~~~~-----~~~~v~~~~~~~~~~~~l~~~s~d~-----~v~iwd~~~~~~~~~~~~~~~~-~~~h~~~v~~v~~~~~ 267 (393)
T 1erj_A 199 CSLTLS-----IEDGVTTVAVSPGDGKYIAAGSLDR-----AVRVWDSETGFLVERLDSENES-GTGHKDSVYSVVFTRD 267 (393)
T ss_dssp EEEEEE-----CSSCEEEEEECSTTCCEEEEEETTS-----CEEEEETTTCCEEEEEC-------CCCSSCEEEEEECTT
T ss_pred eEEEEE-----cCCCcEEEEEECCCCCEEEEEcCCC-----cEEEEECCCCcEEEeecccccC-CCCCCCCEEEEEECCC
Confidence 543221 11111222322 456777777543 4778898776543211111000 0011223444455556
Q ss_pred cEEEEEeccCCCCCceEEEEECCC
Q 012184 271 HHLVAFGGYNGKYNNEVFVMRLKP 294 (469)
Q Consensus 271 ~~l~v~GG~~~~~~~~~~~~d~~~ 294 (469)
+.+++.|+.++ .+.+||+..
T Consensus 268 g~~l~s~s~d~----~v~~wd~~~ 287 (393)
T 1erj_A 268 GQSVVSGSLDR----SVKLWNLQN 287 (393)
T ss_dssp SSEEEEEETTS----EEEEEEC--
T ss_pred CCEEEEEeCCC----EEEEEECCC
Confidence 66777887665 477777654
No 186
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=94.50 E-value=2.7 Score=38.19 Aligned_cols=30 Identities=20% Similarity=0.161 Sum_probs=18.7
Q ss_pred eEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184 262 VCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 262 ~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~ 295 (469)
+..+...+++.+++.||.++. +.+||+...
T Consensus 309 v~~~~~s~~~~~l~s~~~dg~----v~iw~~~~~ 338 (351)
T 3f3f_A 309 VWSVSWNLTGTILSSAGDDGK----VRLWKATYS 338 (351)
T ss_dssp EEEEEECSSSCCEEEEETTSC----EEEEEECTT
T ss_pred EEEEEEcCCCCEEEEecCCCc----EEEEecCcC
Confidence 334445556677788886653 777777653
No 187
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=94.50 E-value=3.2 Score=38.97 Aligned_cols=200 Identities=13% Similarity=0.093 Sum_probs=96.2
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeec------CC-CC-CCCCcceEEEEE---CCEEEEEeccCCCCCccC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMET------SG-KV-PVARGGHSVTLV---GSRLIIFGGEDRSRKLLN 130 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~------~g-~~-p~~r~~~~~~~~---~~~lyi~GG~~~~~~~~~ 130 (469)
++.+++.|+.++ .+..||+.+........ .+ .. ......-.++.+ ++.+++.|+.+ .
T Consensus 55 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------~ 122 (408)
T 4a11_B 55 EGRYMLSGGSDG------VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD------K 122 (408)
T ss_dssp TCCEEEEEETTS------CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT------S
T ss_pred CCCEEEEEcCCC------eEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC------C
Confidence 567777776542 28888887664221110 00 00 011222223333 34466666543 3
Q ss_pred cEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEc---CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCc
Q 012184 131 DVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA---NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRA 207 (469)
Q Consensus 131 ~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~---~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~ 207 (469)
.+.+||+.+........ .+.+. ..+.... ++.+++.|+.+ ..+.+||+.+..-...- .. ....
T Consensus 123 ~i~iwd~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~v~~~d~~~~~~~~~~--~~--~~~~ 188 (408)
T 4a11_B 123 TLKVWDTNTLQTADVFN---FEETV--YSHHMSPVSTKHCLVAVGTRG-----PKVQLCDLKSGSCSHIL--QG--HRQE 188 (408)
T ss_dssp EEEEEETTTTEEEEEEE---CSSCE--EEEEECSSCSSCCEEEEEESS-----SSEEEEESSSSCCCEEE--CC--CCSC
T ss_pred eEEEeeCCCCccceecc---CCCce--eeeEeecCCCCCcEEEEEcCC-----CeEEEEeCCCcceeeee--cC--CCCc
Confidence 58899999887655432 11111 1222221 33466666644 46889998766533211 01 1111
Q ss_pred ceEEEEE-C-CEEEEEecCCCCCCcceEEEEECCCCc--EEEeccCCCC------CCCCCCCcceEEEEEcCCcEEEEEe
Q 012184 208 GHAGITI-D-ENWYIVGGGDNNNGCQETIVLNMTKLA--WSILTSVKGR------NPLASEGLSVCSAIIEGEHHLVAFG 277 (469)
Q Consensus 208 ~~~~~~~-~-~~l~v~GG~~~~~~~~d~~~~d~~~~~--W~~~~~~~~~------~p~~r~~~s~~~~~~~~~~~l~v~G 277 (469)
-.+++.. + ..+++.|+.++ .+.+||+.+.. ...+...... .........+..+...+++..++.|
T Consensus 189 v~~~~~~~~~~~ll~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 263 (408)
T 4a11_B 189 ILAVSWSPRYDYILATASADS-----RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV 263 (408)
T ss_dssp EEEEEECSSCTTEEEEEETTS-----CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEEECCCCCcEEEEEcCCC-----cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEe
Confidence 1122322 2 33677777433 47788886542 2222110000 0001112234444555556667777
Q ss_pred ccCCCCCceEEEEECCCCC
Q 012184 278 GYNGKYNNEVFVMRLKPRD 296 (469)
Q Consensus 278 G~~~~~~~~~~~~d~~~~~ 296 (469)
+.++ .+.+||+.+..
T Consensus 264 ~~dg----~i~vwd~~~~~ 278 (408)
T 4a11_B 264 GTDN----RMRLWNSSNGE 278 (408)
T ss_dssp ETTS----CEEEEETTTCC
T ss_pred cCCC----eEEEEECCCCc
Confidence 7655 48888887654
No 188
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=94.45 E-value=4.7 Score=40.75 Aligned_cols=200 Identities=12% Similarity=0.056 Sum_probs=103.3
Q ss_pred ceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeC-CCCCCCC
Q 012184 79 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVT-QTPPAPR 155 (469)
Q Consensus 79 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~-g~~p~~r 155 (469)
..++..|..+.....+. ..+.++.-|....- ++ ++|+... ..|.|.++|+.+++-...-.. |..|.|-
T Consensus 320 g~v~~vd~~~~~~~~v~---~i~~~~~~~d~~~~pdgr~~~va~~------~sn~V~ViD~~t~kl~~~i~vgg~~Phpg 390 (567)
T 1qks_A 320 GKILLVDYTDLNNLKTT---EISAERFLHDGGLDGSHRYFITAAN------ARNKLVVIDTKEGKLVAIEDTGGQTPHPG 390 (567)
T ss_dssp TEEEEEETTCSSEEEEE---EEECCSSEEEEEECTTSCEEEEEEG------GGTEEEEEETTTTEEEEEEECSSSSBCCT
T ss_pred CeEEEEecCCCccceee---eeeccccccCceECCCCCEEEEEeC------CCCeEEEEECCCCcEEEEEeccCcCCCCc
Confidence 45888888877655544 23344554544433 23 4444322 267799999999986555555 6666554
Q ss_pred CCceEEEEcC-cEEEEEecCCCCcccCcEEEEECCCCc-----eEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCC
Q 012184 156 YDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNE-----WSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNN 227 (469)
Q Consensus 156 ~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~-----W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~ 227 (469)
.+... ...+ +.+|+.+-.+ .+.|.++|..+.. |..+....- +.+...+ +... +.++||---.+..
T Consensus 391 ~g~~~-~~p~~g~v~~t~~~g----~~~Vsvid~~~~~~~~~~~kvv~~i~~-~g~g~~~-i~~~p~~~~l~v~~~~~~~ 463 (567)
T 1qks_A 391 RGANF-VHPTFGPVWATSHMG----DDSVALIGTDPEGHPDNAWKILDSFPA-LGGGSLF-IKTHPNSQYLYVDATLNPE 463 (567)
T ss_dssp TCEEE-EETTTEEEEEEEBSS----SSEEEEEECCTTTCTTTBTSEEEEEEC-SCSCCCC-EECCTTCSEEEEECTTCSS
T ss_pred cceee-ECCCCCcEEEeCCCC----CCeEEEecCCCCCCccccCEEEEEEec-CCCCCEE-EEeCCCCCeEEEecCCCCC
Confidence 44332 3333 5677655322 1468888877633 877654211 1111111 1122 3467775322111
Q ss_pred -CCcceEEEEECCCC-------cEEEeccC--CCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECCCCC
Q 012184 228 -NGCQETIVLNMTKL-------AWSILTSV--KGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLKPRD 296 (469)
Q Consensus 228 -~~~~d~~~~d~~~~-------~W~~~~~~--~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~~~~ 296 (469)
...+.+.+||+.+. .+..++.- ... +. .+-...-+.+++ +.++++.-+......+.+.++|..+..
T Consensus 464 ~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 464 AEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGI-TE--GQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE 540 (567)
T ss_dssp HHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTC-CS--SCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred cccCceEEEEECCcccccccCCCcEEecccccccc-CC--CCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCce
Confidence 11457899998765 23444210 000 00 012222333444 567776633222346789999987764
Q ss_pred C
Q 012184 297 I 297 (469)
Q Consensus 297 w 297 (469)
-
T Consensus 541 ~ 541 (567)
T 1qks_A 541 L 541 (567)
T ss_dssp E
T ss_pred E
Confidence 3
No 189
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.39 E-value=0.16 Score=40.70 Aligned_cols=49 Identities=16% Similarity=0.242 Sum_probs=26.7
Q ss_pred hhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184 375 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML 423 (469)
Q Consensus 375 ~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l 423 (469)
.+++.+.+.++..++++.+++..++.++...+.+...++++++++++++
T Consensus 71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~ 119 (138)
T 3hnw_A 71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEI 119 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555566666666666665555555555554444443
No 190
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=94.39 E-value=0.78 Score=34.09 Aligned_cols=42 Identities=19% Similarity=0.341 Sum_probs=20.7
Q ss_pred hhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhH
Q 012184 367 LTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSR 408 (469)
Q Consensus 367 ~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~ 408 (469)
+.....+...+.+++.+++.....+..++..++.+...+...
T Consensus 13 L~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~e 54 (96)
T 3q8t_A 13 LKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQE 54 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhH
Confidence 333334444555555555555555555555555544444333
No 191
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=94.28 E-value=3.7 Score=38.77 Aligned_cols=124 Identities=12% Similarity=0.130 Sum_probs=71.2
Q ss_pred CCCCCCCCcCeeeEEECCEEEEEccccCCCCCcce-EEEE----ECC-CCeEEEeecCCCCCCCCcceEEEEECCEEEEE
Q 012184 46 LLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI-VRFI----DLE-TNLCGVMETSGKVPVARGGHSVTLVGSRLIIF 119 (469)
Q Consensus 46 ~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~-~~~~----d~~-t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~ 119 (469)
|+..|..-.-|+.+.+++.-|.+|=+.++-....- +..| +.. ...=+.++. .....-+..++-.+++.||+.
T Consensus 277 L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~s--ey~~~AsEPCvkyYdgvLyLt 354 (670)
T 3ju4_A 277 LGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPS--EYEPDASEPCIKYYDGVLYLI 354 (670)
T ss_dssp CCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCG--GGCTTEEEEEEEEETTEEEEE
T ss_pred cccccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechh--hhccccccchhhhhCCEEEEE
Confidence 34447777889999999999999866655432211 2222 111 112223331 122233344555579999998
Q ss_pred eccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecC
Q 012184 120 GGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC 174 (469)
Q Consensus 120 GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~ 174 (469)
--.......-+.+++-+.....|..+..... .-......+.+ ++.|||||--
T Consensus 355 TRgt~~~~~GS~L~rs~d~Gq~w~slrfp~n--vHhtnlPFakv-gD~l~mFgsE 406 (670)
T 3ju4_A 355 TRGTRGDRLGSSLHRSRDIGQTWESLRFPHN--VHHTTLPFAKV-GDDLIMFGSE 406 (670)
T ss_dssp EEESCTTSCCCEEEEESSTTSSCEEEECTTC--CCSSCCCEEEE-TTEEEEEEEC
T ss_pred ecCcCCCCCcceeeeecccCCchhheecccc--ccccCCCccee-CCEEEEEecc
Confidence 5433333356678888888899999864211 11222234555 5569999863
No 192
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=94.24 E-value=1.8 Score=39.23 Aligned_cols=154 Identities=8% Similarity=0.009 Sum_probs=74.5
Q ss_pred CCEEEEEcccc---------CCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE----C-C-EEEEEeccCCCC
Q 012184 62 GTKLLILGGHY---------KKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV----G-S-RLIIFGGEDRSR 126 (469)
Q Consensus 62 ~~~iy~~GG~~---------~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~----~-~-~lyi~GG~~~~~ 126 (469)
++.||+..... ........+++||+. ++...+... ... -..++.. . + .||+....
T Consensus 127 ~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~--~~~---~~~i~~~~~~d~dg~~l~v~~~~---- 196 (314)
T 1pjx_A 127 EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA--FQF---PNGIAVRHMNDGRPYQLIVAETP---- 196 (314)
T ss_dssp TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE--ESS---EEEEEEEECTTSCEEEEEEEETT----
T ss_pred CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC--CCC---cceEEEecccCCCCCEEEEEECC----
Confidence 66788765322 111123569999987 666554321 111 1233333 2 3 46665421
Q ss_pred CccCcEEEEECC-CCeEEEeeeCCCCCCC--CCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCC
Q 012184 127 KLLNDVHFLDLE-TMTWDAVEVTQTPPAP--RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLV 203 (469)
Q Consensus 127 ~~~~~v~~~d~~-t~~W~~~~~~g~~p~~--r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p 203 (469)
.+.+++||+. ++...........+.. ..-..++...++.+|+.... .+.+.+||+.+.+..... ..+
T Consensus 197 --~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~-----~~~i~~~d~~~g~~~~~~---~~~ 266 (314)
T 1pjx_A 197 --TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-----SSHIEVFGPDGGQPKMRI---RCP 266 (314)
T ss_dssp --TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-----TTEEEEECTTCBSCSEEE---ECS
T ss_pred --CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC-----CCEEEEEcCCCCcEeEEE---eCC
Confidence 3568899876 4544322111111111 11123444446778876432 146899998855432211 112
Q ss_pred CCCcceEEEEE-CCE-EEEEecCCCCCCcceEEEEECCCC
Q 012184 204 TGRAGHAGITI-DEN-WYIVGGGDNNNGCQETIVLNMTKL 241 (469)
Q Consensus 204 ~~r~~~~~~~~-~~~-l~v~GG~~~~~~~~d~~~~d~~~~ 241 (469)
. ....+++.. ++. ||+.... .+.+++|++...
T Consensus 267 ~-~~~~~i~~~~dg~~l~v~~~~-----~~~l~~~~~~~~ 300 (314)
T 1pjx_A 267 F-EKPSNLHFKPQTKTIFVTEHE-----NNAVWKFEWQRN 300 (314)
T ss_dssp S-SCEEEEEECTTSSEEEEEETT-----TTEEEEEECSSC
T ss_pred C-CCceeEEECCCCCEEEEEeCC-----CCeEEEEeCCCC
Confidence 1 222233332 344 6665442 247889988653
No 193
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=94.20 E-value=1.1 Score=40.87 Aligned_cols=107 Identities=12% Similarity=0.157 Sum_probs=52.0
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEEC----CEEEEEeccCCCCCccCcEEEEEC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG----SRLIIFGGEDRSRKLLNDVHFLDL 137 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~----~~lyi~GG~~~~~~~~~~v~~~d~ 137 (469)
++..++.|+.+. .+..||+.+.....+.+ +......-.++.+. +.+++.|+.+. .+.++|+
T Consensus 20 ~g~~las~s~D~------~v~iw~~~~~~~~~~~~---l~gH~~~V~~v~~s~~~~g~~l~s~s~D~------~v~iWd~ 84 (297)
T 2pm7_B 20 YGKRMATCSSDK------TIKIFEVEGETHKLIDT---LTGHEGPVWRVDWAHPKFGTILASCSYDG------KVMIWKE 84 (297)
T ss_dssp TSSEEEEEETTS------CEEEEEBCSSCBCCCEE---ECCCSSCEEEEEECCGGGCSEEEEEETTT------EEEEEEB
T ss_pred CCCEEEEEeCCC------EEEEEecCCCCcEEEEE---EccccCCeEEEEecCCCcCCEEEEEcCCC------EEEEEEc
Confidence 566677776543 27778876543222211 01111111223331 45666776543 4788898
Q ss_pred CCCeEEEeeeCCCCCCCCCCceEEEEc-C--cEEEEEecCCCCcccCcEEEEECCCC
Q 012184 138 ETMTWDAVEVTQTPPAPRYDHSAALHA-N--RYLIVFGGCSHSIFFNDLHVLDLQTN 191 (469)
Q Consensus 138 ~t~~W~~~~~~g~~p~~r~~~~~~~~~-~--~~l~v~GG~~~~~~~~~i~~~d~~~~ 191 (469)
.+..|..+..... ....-..+.+. + +.+++.|+.+ ..+.++|+.+.
T Consensus 85 ~~~~~~~~~~~~~---h~~~v~~v~~~p~~~g~~l~s~s~d-----~~v~~wd~~~~ 133 (297)
T 2pm7_B 85 ENGRWSQIAVHAV---HSASVNSVQWAPHEYGPMLLVASSD-----GKVSVVEFKEN 133 (297)
T ss_dssp SSSCBCCCEEECC---CSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEEBCSS
T ss_pred CCCceEEEEEeec---CCCceeEEEeCcCCCCcEEEEEECC-----CcEEEEEecCC
Confidence 8877654332111 11112223332 2 4466666654 35777887654
No 194
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=94.14 E-value=0.78 Score=42.25 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=56.2
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE----CCEEEEEeccCCCCCccCcEEEEEC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV----GSRLIIFGGEDRSRKLLNDVHFLDL 137 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~----~~~lyi~GG~~~~~~~~~~v~~~d~ 137 (469)
++.+++.|+.+. .+.+||+.++....+.. +......-.++.+ ++.+++.|+.+. .+.++|+
T Consensus 24 ~g~~lasgs~D~------~v~lwd~~~~~~~~~~~---l~gH~~~V~~v~~~~~~~~~~l~s~s~D~------~v~iWd~ 88 (316)
T 3bg1_A 24 YGTRLATCSSDR------SVKIFDVRNGGQILIAD---LRGHEGPVWQVAWAHPMYGNILASCSYDR------KVIIWRE 88 (316)
T ss_dssp GGCEEEEEETTT------EEEEEEEETTEEEEEEE---EECCSSCEEEEEECCGGGSSCEEEEETTS------CEEEECC
T ss_pred CCCEEEEEeCCC------eEEEEEecCCCcEEEEE---EcCCCccEEEEEeCCCCCCCEEEEEECCC------EEEEEEC
Confidence 456667766432 37788887765433321 1111111222333 145666676543 3888998
Q ss_pred CCCeEEEeeeCCCCCCCCCCceEEEEcC--cEEEEEecCCCCcccCcEEEEECCCC-ceEe
Q 012184 138 ETMTWDAVEVTQTPPAPRYDHSAALHAN--RYLIVFGGCSHSIFFNDLHVLDLQTN-EWSQ 195 (469)
Q Consensus 138 ~t~~W~~~~~~g~~p~~r~~~~~~~~~~--~~l~v~GG~~~~~~~~~i~~~d~~~~-~W~~ 195 (469)
.+..|........... .-.+++...+ +.+++.|+.+. .+.++|+.+. .|..
T Consensus 89 ~~~~~~~~~~~~~h~~--~V~~v~~~p~~~g~~lasgs~D~-----~i~lwd~~~~~~~~~ 142 (316)
T 3bg1_A 89 ENGTWEKSHEHAGHDS--SVNSVCWAPHDYGLILACGSSDG-----AISLLTYTGEGQWEV 142 (316)
T ss_dssp SSSCCCEEEEECCCSS--CCCEEEECCTTTCSCEEEECSSS-----CEEEEEECSSSCEEE
T ss_pred CCCcceEEEEccCCCC--ceEEEEECCCCCCcEEEEEcCCC-----CEEEEecCCCCCcce
Confidence 8877654432111111 1122222222 45667776553 4677777654 4643
No 195
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=94.09 E-value=3.2 Score=37.32 Aligned_cols=150 Identities=7% Similarity=0.023 Sum_probs=74.1
Q ss_pred CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc
Q 012184 113 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE 192 (469)
Q Consensus 113 ~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~ 192 (469)
++.+++.|+.+. .+.+||.. .-.... ..+....-.++....++. ++.|+.+ ..+.+||+.+.+
T Consensus 154 ~~~~l~~~~~d~------~i~i~d~~--~~~~~~---~~~~~~~i~~~~~~~~~~-~~~~~~d-----g~i~i~d~~~~~ 216 (313)
T 3odt_A 154 SENKFLTASADK------TIKLWQND--KVIKTF---SGIHNDVVRHLAVVDDGH-FISCSND-----GLIKLVDMHTGD 216 (313)
T ss_dssp TTTEEEEEETTS------CEEEEETT--EEEEEE---CSSCSSCEEEEEEEETTE-EEEEETT-----SEEEEEETTTCC
T ss_pred CCCEEEEEECCC------CEEEEecC--ceEEEE---eccCcccEEEEEEcCCCe-EEEccCC-----CeEEEEECCchh
Confidence 455666666432 47888833 222211 111222223334444666 6666544 468999987765
Q ss_pred eEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcE
Q 012184 193 WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHH 272 (469)
Q Consensus 193 W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~ 272 (469)
-...- . . ....-.+++...+..++.|+.+ ..+.+||+.+......-... . .....+...+++.
T Consensus 217 ~~~~~-~-~--~~~~i~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~--~------~~i~~~~~~~~~~ 279 (313)
T 3odt_A 217 VLRTY-E-G--HESFVYCIKLLPNGDIVSCGED-----RTVRIWSKENGSLKQVITLP--A------ISIWSVDCMSNGD 279 (313)
T ss_dssp EEEEE-E-C--CSSCEEEEEECTTSCEEEEETT-----SEEEEECTTTCCEEEEEECS--S------SCEEEEEECTTSC
T ss_pred hhhhh-h-c--CCceEEEEEEecCCCEEEEecC-----CEEEEEECCCCceeEEEecc--C------ceEEEEEEccCCC
Confidence 33211 0 1 1111223333333245566532 35889998877644322111 1 1233344444445
Q ss_pred EEEEeccCCCCCceEEEEECCCCCCCCcc
Q 012184 273 LVAFGGYNGKYNNEVFVMRLKPRDIPRPK 301 (469)
Q Consensus 273 l~v~GG~~~~~~~~~~~~d~~~~~w~~~~ 301 (469)
+ +.|+.++ .+.+||+.+..+....
T Consensus 280 ~-~~~~~dg----~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 280 I-IVGSSDN----LVRIFSQEKSRWASED 303 (313)
T ss_dssp E-EEEETTS----CEEEEESCGGGCCC--
T ss_pred E-EEEeCCC----cEEEEeCCCCceeehh
Confidence 4 4566554 4889999877765443
No 196
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=94.00 E-value=3.7 Score=37.79 Aligned_cols=143 Identities=13% Similarity=0.052 Sum_probs=73.4
Q ss_pred CEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCC
Q 012184 63 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM 140 (469)
Q Consensus 63 ~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~ 140 (469)
+.+++.|+.++ .+..||..+........ .......-.++.+ ++.+++.|+.+ ..+.+||+.+.
T Consensus 54 g~~l~~~~~dg------~i~iw~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~ 118 (368)
T 3mmy_A 54 GNFLIAGSWAN------DVRCWEVQDSGQTIPKA---QQMHTGPVLDVCWSDDGSKVFTASCD------KTAKMWDLSSN 118 (368)
T ss_dssp SEEEEEEETTS------EEEEEEECTTSCEEEEE---EEECSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTT
T ss_pred ceEEEEECCCC------cEEEEEcCCCCceeEEE---eccccCCEEEEEECcCCCEEEEEcCC------CcEEEEEcCCC
Confidence 47888877542 37888887633222110 0011112222333 45566666543 35889999998
Q ss_pred eEEEeeeCCCCCCCCCCceEEE--EcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEE
Q 012184 141 TWDAVEVTQTPPAPRYDHSAAL--HANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENW 218 (469)
Q Consensus 141 ~W~~~~~~g~~p~~r~~~~~~~--~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l 218 (469)
....... ...+ -.++.. ..++.+++.|+.+ ..+.+||+.+.+-.... ..+....++....+.+
T Consensus 119 ~~~~~~~---~~~~--v~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 183 (368)
T 3mmy_A 119 QAIQIAQ---HDAP--VKTIHWIKAPNYSCVMTGSWD-----KTLKFWDTRSSNPMMVL-----QLPERCYCADVIYPMA 183 (368)
T ss_dssp EEEEEEE---CSSC--EEEEEEEECSSCEEEEEEETT-----SEEEEECSSCSSCSEEE-----ECSSCEEEEEEETTEE
T ss_pred Cceeecc---ccCc--eEEEEEEeCCCCCEEEEccCC-----CcEEEEECCCCcEEEEE-----ecCCCceEEEecCCee
Confidence 8665432 1111 122222 3466677777754 45889998776532211 1111222344445555
Q ss_pred EEEecCCCCCCcceEEEEECCCC
Q 012184 219 YIVGGGDNNNGCQETIVLNMTKL 241 (469)
Q Consensus 219 ~v~GG~~~~~~~~d~~~~d~~~~ 241 (469)
++.++ ...+.+||+...
T Consensus 184 ~~~~~------~~~i~~~~~~~~ 200 (368)
T 3mmy_A 184 VVATA------ERGLIVYQLENQ 200 (368)
T ss_dssp EEEEG------GGCEEEEECSSS
T ss_pred EEEeC------CCcEEEEEeccc
Confidence 54433 235777887654
No 197
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=93.97 E-value=2.9 Score=38.03 Aligned_cols=192 Identities=13% Similarity=0.056 Sum_probs=89.7
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT 141 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~ 141 (469)
++.+++.|+.++ .+..+|..++.-...-. ............-++.+++.|+.+ ..+.+||+.++.
T Consensus 24 ~~~~l~s~~~dg------~v~lWd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~s~d------~~i~vwd~~~~~ 88 (304)
T 2ynn_A 24 TEPWVLTTLYSG------RVELWNYETQVEVRSIQ---VTETPVRAGKFIARKNWIIVGSDD------FRIRVFNYNTGE 88 (304)
T ss_dssp SSSEEEEEETTS------EEEEEETTTTEEEEEEE---CCSSCEEEEEEEGGGTEEEEEETT------SEEEEEETTTCC
T ss_pred CCCEEEEEcCCC------cEEEEECCCCceeEEee---ccCCcEEEEEEeCCCCEEEEECCC------CEEEEEECCCCc
Confidence 555666666432 38888988876433221 111111111111244566666643 348889988876
Q ss_pred EEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEEE
Q 012184 142 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWY 219 (469)
Q Consensus 142 W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~ 219 (469)
-...-. + ....-.++....++.+++.|+.+ ..+.++|+.+.. ....... .....-.+++.. ++.++
T Consensus 89 ~~~~~~-~---h~~~v~~~~~~~~~~~l~sgs~D-----~~v~lWd~~~~~-~~~~~~~--~h~~~v~~v~~~p~~~~~l 156 (304)
T 2ynn_A 89 KVVDFE-A---HPDYIRSIAVHPTKPYVLSGSDD-----LTVKLWNWENNW-ALEQTFE--GHEHFVMCVAFNPKDPSTF 156 (304)
T ss_dssp EEEEEE-C---CSSCEEEEEECSSSSEEEEEETT-----SCEEEEEGGGTT-EEEEEEC--CCCSCEEEEEECTTCTTEE
T ss_pred EEEEEe-C---CCCcEEEEEEcCCCCEEEEECCC-----CeEEEEECCCCc-chhhhhc--ccCCcEEEEEECCCCCCEE
Confidence 432211 1 11112233333455567777755 347788876542 2111100 111111222322 34577
Q ss_pred EEecCCCCCCcceEEEEECCCCcEE-EeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184 220 IVGGGDNNNGCQETIVLNMTKLAWS-ILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 220 v~GG~~~~~~~~d~~~~d~~~~~W~-~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~ 295 (469)
+.|+.++ .+.+||+.+..-. .+. ... ........+...+++.+++.|+.++ .+.+||+.+.
T Consensus 157 ~sgs~D~-----~v~iwd~~~~~~~~~~~--~~~----~~~v~~~~~~~~~~~~~l~s~s~D~----~i~iWd~~~~ 218 (304)
T 2ynn_A 157 ASGCLDR-----TVKVWSLGQSTPNFTLT--TGQ----ERGVNYVDYYPLPDKPYMITASDDL----TIKIWDYQTK 218 (304)
T ss_dssp EEEETTS-----EEEEEETTCSSCSEEEE--CCC----TTCEEEEEECCSTTCCEEEEEETTS----EEEEEETTTT
T ss_pred EEEeCCC-----eEEEEECCCCCccceec--cCC----cCcEEEEEEEEcCCCCEEEEEcCCC----eEEEEeCCCC
Confidence 7777542 5778887543211 110 000 0111222222223456677777654 4777777654
No 198
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=93.97 E-value=5 Score=40.22 Aligned_cols=151 Identities=11% Similarity=-0.013 Sum_probs=75.0
Q ss_pred EEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCC-CcceEEEEE--C-CEEEEEeccCCCCCccCcEEEEECCCC
Q 012184 65 LLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVA-RGGHSVTLV--G-SRLIIFGGEDRSRKLLNDVHFLDLETM 140 (469)
Q Consensus 65 iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~-r~~~~~~~~--~-~~lyi~GG~~~~~~~~~~v~~~d~~t~ 140 (469)
+++.|+.+ ..+..||..+..-...- ..... .....++.+ + +.+++.|+.+ ..+.+||+.+.
T Consensus 175 ~l~~~~~d------~~v~vwd~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~ 239 (615)
T 1pgu_A 175 RSMTVGDD------GSVVFYQGPPFKFSASD---RTHHKQGSFVRDVEFSPDSGEFVITVGSD------RKISCFDGKSG 239 (615)
T ss_dssp EEEEEETT------TEEEEEETTTBEEEEEE---CSSSCTTCCEEEEEECSTTCCEEEEEETT------CCEEEEETTTC
T ss_pred EEEEEeCC------CcEEEEeCCCcceeeee---cccCCCCceEEEEEECCCCCCEEEEEeCC------CeEEEEECCCC
Confidence 66666643 23888998777644332 11111 002223333 3 5667777653 34899999887
Q ss_pred eEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEE
Q 012184 141 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYI 220 (469)
Q Consensus 141 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v 220 (469)
+....-..........-.++... ++..++.|+.+ ..+.+||+.+.+..........+......+++..++..++
T Consensus 240 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 313 (615)
T 1pgu_A 240 EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD-----ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII 313 (615)
T ss_dssp CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT-----SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEE
T ss_pred CEeEEecccccccCCceEEEEEc-CCCEEEEEcCC-----CcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEE
Confidence 75443201000111112223333 55566666644 4588999987765432211111111122222322566666
Q ss_pred EecCCCCCCcceEEEEECCCC
Q 012184 221 VGGGDNNNGCQETIVLNMTKL 241 (469)
Q Consensus 221 ~GG~~~~~~~~d~~~~d~~~~ 241 (469)
.|+.+ ..+.+||+.+.
T Consensus 314 ~~~~~-----g~i~~~d~~~~ 329 (615)
T 1pgu_A 314 SLSLD-----GTLNFYELGHD 329 (615)
T ss_dssp EEETT-----SCEEEEETTEE
T ss_pred EEECC-----CCEEEEECCCC
Confidence 76643 35778887763
No 199
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=93.91 E-value=2.6 Score=36.00 Aligned_cols=155 Identities=12% Similarity=0.076 Sum_probs=83.1
Q ss_pred CeeeEEECCEEEEEccccCCCCCcceEEEEECCCC--eEEEeecC---CCCCCCCcceEEEEE--CCEEEEEeccCCCCC
Q 012184 55 DHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN--LCGVMETS---GKVPVARGGHSVTLV--GSRLIIFGGEDRSRK 127 (469)
Q Consensus 55 ~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~--~W~~~~~~---g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~ 127 (469)
.-+++..++++|+|=|. -+|+++.... ........ ..+|. ... ++... ++++|+|-|
T Consensus 9 fDAi~~~~g~~yfFkg~--------~~Wr~~~~~~~~~~~p~~Is~~w~glP~-~ID-Aa~~~~~~~~~yfFkG------ 72 (195)
T 1itv_A 9 FDAIAEIGNQLYLFKDG--------KYWRFSEGRGSRPQGPFLIADKWPALPR-KLD-SVFEEPLSKKLFFFSG------ 72 (195)
T ss_dssp CSEEEEETTEEEEEETT--------EEEEECCSSSCCCEEEEEHHHHCTTSCS-SCS-EEEECTTTCCEEEEET------
T ss_pred CCEEEEeCCEEEEEECC--------EEEEEECCccccCCCcEEhhhccCCCCC-Ccc-EEEEECCCCeEEEEeC------
Confidence 34556679999999663 2888877552 23222211 01332 122 22222 578999965
Q ss_pred ccCcEEEEECCCCeE-EEeeeCCCCCCC-CCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEe--eeecC-CC
Q 012184 128 LLNDVHFLDLETMTW-DAVEVTQTPPAP-RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ--PEIKG-DL 202 (469)
Q Consensus 128 ~~~~v~~~d~~t~~W-~~~~~~g~~p~~-r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~--~~~~~-~~ 202 (469)
+..|+|+..+..- +.+...| +|.. ..--++....++++|+|-| +..|+||..+.+-.. +.... ..
T Consensus 73 --~~yw~~~~~~~~~Pk~i~~~G-~p~~~~~iDAA~~~~~g~~yfFkg-------~~ywr~d~~~~~~~~gyPr~i~~~w 142 (195)
T 1itv_A 73 --RQVWVYTGASVLGPRRLDKLG-LGADVAQVTGALRSGRGKMLLFSG-------RRLWRFDVKAQMVDPRSASEVDRMF 142 (195)
T ss_dssp --TEEEEEETTEEEEEEEGGGGT-CCTTCCCCCEEEECSTTEEEEEET-------TEEEEEETTTTEECGGGCEEHHHHS
T ss_pred --CEEEEEcCCccCCCEEeeecc-cCCCccceeEEEEcCCCeEEEEeC-------CEEEEEeCCcccccCCCccChhhcC
Confidence 3478887543211 1111112 2321 1222333345789999987 578999987654221 00000 11
Q ss_pred C-CCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCc
Q 012184 203 V-TGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLA 242 (469)
Q Consensus 203 p-~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~ 242 (469)
+ .|..-.++...++.+|+|-| +..|+||..+..
T Consensus 143 ~Gvp~~idaa~~~~g~~Yffkg-------~~y~~~~~~~~~ 176 (195)
T 1itv_A 143 PGVPLDTHDVFQFREKAYFCQD-------RFYWRVSSRSEL 176 (195)
T ss_dssp TTSCSSCSEEEEETTEEEEEET-------TEEEEEECCTTC
T ss_pred CCCCCCCCEEEEeCCeEEEEeC-------CEEEEEECCccE
Confidence 1 12223455556799999987 378999987665
No 200
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=93.89 E-value=4 Score=39.89 Aligned_cols=187 Identities=18% Similarity=0.197 Sum_probs=97.2
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT 141 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~ 141 (469)
++.+|+|-|. .+|+||..+.+.....-.| +| . --++....+++|+|-|. ..++||..+.+
T Consensus 158 ~~~~yfFkG~--------~yw~yd~~~~~~~~~~w~g-i~--~-iDAA~~~~g~~YfFkG~--------~y~rfd~~~~~ 217 (460)
T 1qhu_A 158 DEGILFFQGN--------RKWFWDLTTGTKKERSWPA-VG--N-CTSALRWLGRYYCFQGN--------QFLRFNPVSGE 217 (460)
T ss_dssp SSEEEEEETT--------EEEEEETTTTEEEEECCTT-SC--C-CSEEEEETTEEEEEETT--------EEEEECTTTCC
T ss_pred CCeEEEEecc--------cEEEEecccceeecccCCC-CC--c-cchheeeCCceEEEECC--------EEEEEcCccCc
Confidence 6788988763 3899999988766432222 22 2 23444457899999663 36677765443
Q ss_pred EE------------EeeeCC------------C---CCCCCCCceEEEE-cCcEEEEEecCCCCcccCcEEEEECCCCce
Q 012184 142 WD------------AVEVTQ------------T---PPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEW 193 (469)
Q Consensus 142 W~------------~~~~~g------------~---~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W 193 (469)
-. .++..| . .+.|....-++.. .++.+|+|-| +..|+++.....+
T Consensus 218 v~~gyPk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg-------~~yWR~~~~~~~~ 290 (460)
T 1qhu_A 218 VPPGYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSG-------SHYWRLDTNRDGW 290 (460)
T ss_dssp CCTTCCEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEET-------TEEEECTTGGGCC
T ss_pred ccCCCCcchhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeC-------CEEEEEecCCCCc
Confidence 21 111000 0 0111112233333 4678999987 3466666544333
Q ss_pred Eeeeec---CCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCC------CCCCC--CCCcce
Q 012184 194 SQPEIK---GDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKG------RNPLA--SEGLSV 262 (469)
Q Consensus 194 ~~~~~~---~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~------~~p~~--r~~~s~ 262 (469)
....+. +.+|.. --++...++.+|+|=| +.+|+|+.... .+.++.-|- ..|.. ... +
T Consensus 291 ~p~~Is~~WpglP~~--IDAAf~~~~~~yfFkG-------~~yw~f~~~~g-~~~~~GyPK~I~~~lGlp~~~~~~~--I 358 (460)
T 1qhu_A 291 HSWPIAHQWPQGPST--VDAAFSWEDKLYLIQD-------TKVYVFLTKGG-YTLVNGYPKRLEKELGSPPVISLEA--V 358 (460)
T ss_dssp CCEEGGGTCTTSCSS--CSEEEEETTEEEEEET-------TEEEEEECSBS-CEECTTCCEEHHHHHCCCSSCCCSC--C
T ss_pred CccchhhhccCCCCC--CcEEEEECCeEEEEeC-------CEEEEEeCCCC-ceecCCCCeEHHHhccCCCccccCc--c
Confidence 221111 122332 3355556889999977 36889987542 122211000 01111 111 2
Q ss_pred EEEEE-cCCcEEEEEeccCCCCCceEEEEECC
Q 012184 263 CSAII-EGEHHLVAFGGYNGKYNNEVFVMRLK 293 (469)
Q Consensus 263 ~~~~~-~~~~~l~v~GG~~~~~~~~~~~~d~~ 293 (469)
-++.. ...+++|+|-| +..|+||..
T Consensus 359 DAA~~~~~~~ktyfFkG------~~ywryd~~ 384 (460)
T 1qhu_A 359 DAAFVCPGSSRLHIMAG------RRLWWLDLK 384 (460)
T ss_dssp CEEECCTTCCEEEEEET------TEEEEEEGG
T ss_pred cEEEEeCCCCEEEEEEC------CEEEEEECC
Confidence 22222 23678888876 358899976
No 201
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=93.87 E-value=0.83 Score=32.77 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=9.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184 398 VQGQLVAERSRCFKLEAQIAELQKML 423 (469)
Q Consensus 398 ~~~~l~~~~~~~~~~~~~~~e~~~~l 423 (469)
.+.++.....+..+.+..+..+++++
T Consensus 25 ~e~~l~~~e~~~~~~E~ev~~L~kKi 50 (81)
T 1ic2_A 25 AEADKKAAEERSKQLEDELVALQKKL 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33333333333333444443343333
No 202
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=93.82 E-value=5.8 Score=40.92 Aligned_cols=188 Identities=13% Similarity=0.104 Sum_probs=92.0
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
++.+++.|+.++ .+.++|+.++.-...-. + ... ...++.+ ++..++.|+.+. .+.++|+..
T Consensus 441 ~g~~l~sgs~Dg------~v~vwd~~~~~~~~~~~-~--h~~--~v~~~~~s~~~~~l~s~s~D~------~i~iwd~~~ 503 (694)
T 3dm0_A 441 DGQFALSGSWDG------ELRLWDLAAGVSTRRFV-G--HTK--DVLSVAFSLDNRQIVSASRDR------TIKLWNTLG 503 (694)
T ss_dssp TSSEEEEEETTS------EEEEEETTTTEEEEEEE-C--CSS--CEEEEEECTTSSCEEEEETTS------CEEEECTTS
T ss_pred CCCEEEEEeCCC------cEEEEECCCCcceeEEe-C--CCC--CEEEEEEeCCCCEEEEEeCCC------EEEEEECCC
Confidence 566777776442 38899998876433221 1 111 1122223 455666666443 377888765
Q ss_pred CeEEEeeeCCCCCCCCCCceEEEEc-Cc--EEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-C
Q 012184 140 MTWDAVEVTQTPPAPRYDHSAALHA-NR--YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-D 215 (469)
Q Consensus 140 ~~W~~~~~~g~~p~~r~~~~~~~~~-~~--~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~ 215 (469)
..-..+...+ ...+....++.+. ++ .+++.|+.+ ..|.++|+.+..-...- .+ ... .-.+++.. +
T Consensus 504 ~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~s~d-----~~v~vwd~~~~~~~~~~-~~--h~~-~v~~v~~spd 572 (694)
T 3dm0_A 504 ECKYTISEGG--EGHRDWVSCVRFSPNTLQPTIVSASWD-----KTVKVWNLSNCKLRSTL-AG--HTG-YVSTVAVSPD 572 (694)
T ss_dssp CEEEEECSST--TSCSSCEEEEEECSCSSSCEEEEEETT-----SCEEEEETTTCCEEEEE-CC--CSS-CEEEEEECTT
T ss_pred CcceeeccCC--CCCCCcEEEEEEeCCCCcceEEEEeCC-----CeEEEEECCCCcEEEEE-cC--CCC-CEEEEEEeCC
Confidence 5433332111 1111112233332 22 356666654 35889998776543321 11 111 11122222 4
Q ss_pred CEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184 216 ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 216 ~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~ 295 (469)
+.+++.|+.++ .+.++|+.+..-. ..+... ..+..+...+++.+++.+.. ..+.+||+.+.
T Consensus 573 g~~l~sg~~Dg-----~i~iwd~~~~~~~--~~~~~~-------~~v~~~~~sp~~~~l~~~~~-----~~i~iwd~~~~ 633 (694)
T 3dm0_A 573 GSLCASGGKDG-----VVLLWDLAEGKKL--YSLEAN-------SVIHALCFSPNRYWLCAATE-----HGIKIWDLESK 633 (694)
T ss_dssp SSEEEEEETTS-----BCEEEETTTTEEE--ECCBCS-------SCEEEEEECSSSSEEEEEET-----TEEEEEETTTT
T ss_pred CCEEEEEeCCC-----eEEEEECCCCceE--EEecCC-------CcEEEEEEcCCCcEEEEEcC-----CCEEEEECCCC
Confidence 56777777533 4778888776532 222111 12333444555555555542 24888888665
Q ss_pred C
Q 012184 296 D 296 (469)
Q Consensus 296 ~ 296 (469)
.
T Consensus 634 ~ 634 (694)
T 3dm0_A 634 S 634 (694)
T ss_dssp E
T ss_pred C
Confidence 3
No 203
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=93.73 E-value=0.84 Score=44.28 Aligned_cols=21 Identities=10% Similarity=0.276 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 012184 428 TIENEVQILRQQKSAFEQEME 448 (469)
Q Consensus 428 ~~e~e~~~~~q~~~~~~~~~~ 448 (469)
.|+..++++.++++.++..+.
T Consensus 172 ~L~~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 172 VLRAVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666655554
No 204
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=93.69 E-value=2 Score=41.48 Aligned_cols=101 Identities=14% Similarity=0.140 Sum_probs=50.0
Q ss_pred CCEEEEEeccCCCCCccCcEEEEECCCCe----EEEeeeCCCCCCCCCCceEEEEc--CcEEEEEecCCCCcccCcEEEE
Q 012184 113 GSRLIIFGGEDRSRKLLNDVHFLDLETMT----WDAVEVTQTPPAPRYDHSAALHA--NRYLIVFGGCSHSIFFNDLHVL 186 (469)
Q Consensus 113 ~~~lyi~GG~~~~~~~~~~v~~~d~~t~~----W~~~~~~g~~p~~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~i~~~ 186 (469)
++.+++.|+.+ ..+.+||+.+.. -..+. ........+.+. +..+++.|+.+ +.|.+|
T Consensus 243 ~~~~l~s~~~d------g~i~i~d~~~~~~~~~~~~~~------~~~~~v~~i~~~p~~~~~l~tg~~d-----g~v~vw 305 (430)
T 2xyi_A 243 HESLFGSVADD------QKLMIWDTRNNNTSKPSHTVD------AHTAEVNCLSFNPYSEFILATGSAD-----KTVALW 305 (430)
T ss_dssp CTTEEEEEETT------SEEEEEETTCSCSSSCSEEEE------CCSSCEEEEEECSSCTTEEEEEETT-----SEEEEE
T ss_pred CCCEEEEEeCC------CeEEEEECCCCCCCcceeEee------cCCCCeEEEEeCCCCCCEEEEEeCC-----CeEEEE
Confidence 35577666543 348899988652 11111 111112233332 23478888754 358899
Q ss_pred ECCCCc--eEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCC
Q 012184 187 DLQTNE--WSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTK 240 (469)
Q Consensus 187 d~~~~~--W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~ 240 (469)
|+.+.. -..+. . ....-.++... +..+++.||.++ .+.+||+..
T Consensus 306 d~~~~~~~~~~~~---~--h~~~v~~i~~sp~~~~~l~s~~~d~-----~i~iwd~~~ 353 (430)
T 2xyi_A 306 DLRNLKLKLHSFE---S--HKDEIFQVQWSPHNETILASSGTDR-----RLHVWDLSK 353 (430)
T ss_dssp ETTCTTSCSEEEE---C--CSSCEEEEEECSSCTTEEEEEETTS-----CCEEEEGGG
T ss_pred eCCCCCCCeEEee---c--CCCCEEEEEECCCCCCEEEEEeCCC-----cEEEEeCCC
Confidence 987632 11111 0 11111122222 235777777542 467888765
No 205
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=93.68 E-value=4.9 Score=38.08 Aligned_cols=105 Identities=13% Similarity=0.045 Sum_probs=54.5
Q ss_pred CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcE-EEEEecCCCCcccCcEEEEECCCC
Q 012184 113 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRY-LIVFGGCSHSIFFNDLHVLDLQTN 191 (469)
Q Consensus 113 ~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~-l~v~GG~~~~~~~~~i~~~d~~~~ 191 (469)
++.+++.|+.++ .+.+||+.+..-...... .....-.+++...++. +++.|+.+ ..+.+||+.+.
T Consensus 258 ~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~g~~d-----g~i~vwd~~~~ 323 (420)
T 3vl1_A 258 YGKYVIAGHVSG------VITVHNVFSKEQTIQLPS---KFTCSCNSLTVDGNNANYIYAGYEN-----GMLAQWDLRSP 323 (420)
T ss_dssp TTEEEEEEETTS------CEEEEETTTCCEEEEECC---TTSSCEEEEEECSSCTTEEEEEETT-----SEEEEEETTCT
T ss_pred CCCEEEEEcCCC------eEEEEECCCCceeEEccc---ccCCCceeEEEeCCCCCEEEEEeCC-----CeEEEEEcCCC
Confidence 456666666432 389999988764332211 1111122333333444 66666644 46899999876
Q ss_pred ce--EeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCC
Q 012184 192 EW--SQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTK 240 (469)
Q Consensus 192 ~W--~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~ 240 (469)
.- ..+.. . ....-.++...++.+++.|+.+ ..+.+||+..
T Consensus 324 ~~~~~~~~~--~--~~~~v~~~~~~~~~~l~s~~~d-----~~v~iw~~~~ 365 (420)
T 3vl1_A 324 ECPVGEFLI--N--EGTPINNVYFAAGALFVSSGFD-----TSIKLDIISD 365 (420)
T ss_dssp TSCSEEEEE--S--TTSCEEEEEEETTEEEEEETTT-----EEEEEEEECC
T ss_pred cCchhhhhc--c--CCCCceEEEeCCCCEEEEecCC-----ccEEEEeccC
Confidence 42 22221 1 1112223344477788887743 2466777654
No 206
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=93.57 E-value=3.3 Score=35.71 Aligned_cols=157 Identities=13% Similarity=0.118 Sum_probs=81.6
Q ss_pred eeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCC---CCCCCCcceEEEEE-CCEEEEEeccCCCCCccCc
Q 012184 56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSG---KVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLND 131 (469)
Q Consensus 56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g---~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~ 131 (469)
-+++..++.+|+|=|. .+|+++.....+....... .+|. ....+.... ++++|+|-|. .
T Consensus 27 DAi~~~~g~~y~Fkg~--------~~wr~~~~~~~~~p~~I~~~wp~Lp~-~iDAa~~~~~~~~iyfFkG~--------~ 89 (207)
T 1pex_A 27 DAITSLRGETMIFKDR--------FFWRLHPQQVDAELFLTKSFWPELPN-RIDAAYEHPSHDLIFIFRGR--------K 89 (207)
T ss_dssp SEEEEETTEEEEEETT--------EEEEECSSSSCCEEEEHHHHCTTSCS-SCCEEEEETTTTEEEEEETT--------E
T ss_pred eEEEeCCCcEEEEECC--------EEEEEeCCCcCCCceehhHhccCCCC-CccEEEEeccCCcEEEEccC--------E
Confidence 4566679999999653 2788876554433222110 1332 222222221 5899999653 3
Q ss_pred EEEEECCCCeE---EEeeeCCCCCCC-CCCceEEEE-cCcEEEEEecCCCCcccCcEEEEECCCCceEe--eeec-CCC-
Q 012184 132 VHFLDLETMTW---DAVEVTQTPPAP-RYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ--PEIK-GDL- 202 (469)
Q Consensus 132 v~~~d~~t~~W---~~~~~~g~~p~~-r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~--~~~~-~~~- 202 (469)
+|+|+-.+..- +.+...| +|.. ..--++... +++++|+|-| +..|+||..+.+-.. +... ...
T Consensus 90 ~w~~~~~~~~~gyPk~I~~~G-lP~~~~~IDAA~~~~~~gk~yfFkG-------~~ywr~d~~~~~~d~gyPr~i~~~~~ 161 (207)
T 1pex_A 90 FWALNGYDILEGYPKKISELG-LPKEVKKISAAVHFEDTGKTLLFSG-------NQVWRYDDTNHIMDKDYPRLIEEDFP 161 (207)
T ss_dssp EEEESTTCCCTTCSEESTTTT-CCTTCCCCCEEEECTTTSEEEEEET-------TEEEEEETTTTEECSSCCCBHHHHST
T ss_pred EEEEeCCeeccCCceeccccC-CCCCCccccEEEEeCCCCEEEEEeC-------CEEEEEeCcCccccCCCCccHHHcCC
Confidence 66665322110 1121112 2221 112233333 3589999987 678999987654221 0000 000
Q ss_pred CCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEE
Q 012184 203 VTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWS 244 (469)
Q Consensus 203 p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~ 244 (469)
..+..-.+|...++++|+|-| +..|+||..+..-.
T Consensus 162 Gip~~iDaAf~~~g~~YfFkg-------~~y~rf~~~~~~v~ 196 (207)
T 1pex_A 162 GIGDKVDAVYEKNGYIYFFNG-------PIQFEYSIWSNRIV 196 (207)
T ss_dssp TSCSCCSEEEEETTEEEEEET-------TEEEEEETTTTEEE
T ss_pred CCCCCccEEEEcCCcEEEEEC-------CEEEEEeCCccEEe
Confidence 112222344456899999977 37899998776543
No 207
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=93.52 E-value=4.5 Score=37.19 Aligned_cols=193 Identities=12% Similarity=0.046 Sum_probs=90.9
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE----CCEEEEEeccCCCCCccCcEEEEEC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV----GSRLIIFGGEDRSRKLLNDVHFLDL 137 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~----~~~lyi~GG~~~~~~~~~~v~~~d~ 137 (469)
++..++.|+.+ ..+..||+.+.....+.. .. ....++.+ ++.+++.|+.+ ..+.+||+
T Consensus 97 ~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~---~~---~~v~~~~~~~~~~~~~l~~~~~d------g~i~vwd~ 158 (368)
T 3mmy_A 97 DGSKVFTASCD------KTAKMWDLSSNQAIQIAQ---HD---APVKTIHWIKAPNYSCVMTGSWD------KTLKFWDT 158 (368)
T ss_dssp TSSEEEEEETT------SEEEEEETTTTEEEEEEE---CS---SCEEEEEEEECSSCEEEEEEETT------SEEEEECS
T ss_pred CCCEEEEEcCC------CcEEEEEcCCCCceeecc---cc---CceEEEEEEeCCCCCEEEEccCC------CcEEEEEC
Confidence 55566666543 248899999988665541 11 11222222 45677777654 34888998
Q ss_pred CCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-C-
Q 012184 138 ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-D- 215 (469)
Q Consensus 138 ~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~- 215 (469)
.+.+-...-. .+....++... ...+++.++ + +.+.+|++....-..... ..+........... +
T Consensus 159 ~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~-~-----~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 224 (368)
T 3mmy_A 159 RSSNPMMVLQ-----LPERCYCADVI-YPMAVVATA-E-----RGLIVYQLENQPSEFRRI--ESPLKHQHRCVAIFKDK 224 (368)
T ss_dssp SCSSCSEEEE-----CSSCEEEEEEE-TTEEEEEEG-G-----GCEEEEECSSSCEEEEEC--CCSCSSCEEEEEEEECT
T ss_pred CCCcEEEEEe-----cCCCceEEEec-CCeeEEEeC-C-----CcEEEEEeccccchhhhc--cccccCCCceEEEcccC
Confidence 7765322211 11122222333 443444332 2 457888886653222111 11222222222222 1
Q ss_pred ---CEEEEEecCCCCCCcceEEEEECCCCcE----EEeccCC-CCCCCCCCCc--ceEEEEEcCCcEEEEEeccCCCCCc
Q 012184 216 ---ENWYIVGGGDNNNGCQETIVLNMTKLAW----SILTSVK-GRNPLASEGL--SVCSAIIEGEHHLVAFGGYNGKYNN 285 (469)
Q Consensus 216 ---~~l~v~GG~~~~~~~~d~~~~d~~~~~W----~~~~~~~-~~~p~~r~~~--s~~~~~~~~~~~l~v~GG~~~~~~~ 285 (469)
...++.|+.+ ..+.+||+....- ..+.... ........+| .+..+...+++.+++.|+.++
T Consensus 225 ~~~~~~~~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg---- 295 (368)
T 3mmy_A 225 QNKPTGFALGSIE-----GRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG---- 295 (368)
T ss_dssp TSCEEEEEEEETT-----SEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS----
T ss_pred CCCCCeEEEecCC-----CcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCC----
Confidence 2336666543 3567777765421 1111000 0000000111 344455556667778887665
Q ss_pred eEEEEECCCC
Q 012184 286 EVFVMRLKPR 295 (469)
Q Consensus 286 ~~~~~d~~~~ 295 (469)
.+.+||+.+.
T Consensus 296 ~i~iwd~~~~ 305 (368)
T 3mmy_A 296 RFSFWDKDAR 305 (368)
T ss_dssp CEEEEETTTT
T ss_pred eEEEEECCCC
Confidence 3888888754
No 208
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=93.50 E-value=0.58 Score=33.06 Aligned_cols=66 Identities=15% Similarity=0.245 Sum_probs=31.4
Q ss_pred hhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 012184 374 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSA 442 (469)
Q Consensus 374 ~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~ 442 (469)
.+.+..++++++..+.+++..++.++.+++.-+.+-..++.++ ++-++...-.-.|+.+++|.++.
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~El---k~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEV---GRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666655544433333222 22222222222345555555444
No 209
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=93.47 E-value=1.2 Score=36.26 Aligned_cols=74 Identities=24% Similarity=0.289 Sum_probs=38.0
Q ss_pred hhhHhhhhhhhcchhhHHHHHHHH-------HHHHHHhhhHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHH
Q 012184 375 SRFREKIDEVNSTHSELSKELSSV-------QGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAF 443 (469)
Q Consensus 375 ~~l~~~~~~~~~~~~e~~~el~~~-------~~~l~~~~~~~~~~~~~~~e~~~~l~~~~----~~e~e~~~~~q~~~~~ 443 (469)
.+.....+..+..+.+++.++..+ +..-.+..++...++.++..++.++...+ .-++.+..+++.+..+
T Consensus 31 EraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~l 110 (155)
T 2efr_A 31 ERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDL 110 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444443 33333335666667777777776665555 3445555555555555
Q ss_pred HHHHH
Q 012184 444 EQEME 448 (469)
Q Consensus 444 ~~~~~ 448 (469)
+.++.
T Consensus 111 Ed~L~ 115 (155)
T 2efr_A 111 EDELY 115 (155)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 210
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=93.47 E-value=0.77 Score=45.36 Aligned_cols=28 Identities=21% Similarity=0.308 Sum_probs=17.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 012184 422 MLESSQTIENEVQILRQQKSAFEQEMER 449 (469)
Q Consensus 422 ~l~~~~~~e~e~~~~~q~~~~~~~~~~~ 449 (469)
.+..++++|.|+.++.++++..+.++++
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 441 GQKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777776666666653
No 211
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=93.42 E-value=0.8 Score=31.69 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=18.0
Q ss_pred hHhhhhhhhcchhhHHHHHHHHHHHHHHhhhH
Q 012184 377 FREKIDEVNSTHSELSKELSSVQGQLVAERSR 408 (469)
Q Consensus 377 l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~ 408 (469)
+..++++++..+.+++..++.++.+++.-+.+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~ 36 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSE 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666555554443
No 212
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.40 E-value=0.59 Score=37.13 Aligned_cols=39 Identities=23% Similarity=0.208 Sum_probs=17.4
Q ss_pred hhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184 384 VNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM 422 (469)
Q Consensus 384 ~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~ 422 (469)
.+.++.++.+.++.++.+++.++.....|+..+.+.+..
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~ 74 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGR 74 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555544443
No 213
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.37 E-value=0.87 Score=45.17 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=7.6
Q ss_pred CcEEEEECCCCceEe
Q 012184 181 NDLHVLDLQTNEWSQ 195 (469)
Q Consensus 181 ~~i~~~d~~~~~W~~ 195 (469)
..+..+|++.+....
T Consensus 144 ~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 144 SRVQYLDLKLNEIDT 158 (487)
T ss_dssp SSEEEEECTTSCCCE
T ss_pred CCCCEEECCCCCCCC
Confidence 345555555554433
No 214
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.34 E-value=0.25 Score=39.55 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=21.6
Q ss_pred hhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184 374 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML 423 (469)
Q Consensus 374 ~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l 423 (469)
...+++++++.+.++..+.+++...+.++...+....++++++.++++++
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444433
No 215
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.33 E-value=1.3 Score=32.54 Aligned_cols=31 Identities=32% Similarity=0.483 Sum_probs=12.0
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhh
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDE 383 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 383 (469)
.+.++++.+.++..+.....+..+|...+.+
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~e 37 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAK 37 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444433333333333333333333
No 216
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=93.33 E-value=4.6 Score=36.70 Aligned_cols=165 Identities=7% Similarity=-0.024 Sum_probs=79.5
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCC-CCCCCCcceEEEEECCEEEEE----eccCC-------CCCcc
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSG-KVPVARGGHSVTLVGSRLIIF----GGEDR-------SRKLL 129 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g-~~p~~r~~~~~~~~~~~lyi~----GG~~~-------~~~~~ 129 (469)
+++||+... . ...+.+||+. ++...+.... ..+..+....++.-++.||+. |-... .....
T Consensus 96 dG~l~v~~~-~-----~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~ 168 (305)
T 3dr2_A 96 QQRLVHCEH-G-----RRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAH 168 (305)
T ss_dssp TSCEEEEET-T-----TTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSC
T ss_pred CCCEEEEEC-C-----CCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCC
Confidence 567776631 1 1248899986 7776664210 111111122222235678874 32210 01124
Q ss_pred CcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCc-EEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcc
Q 012184 130 NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAG 208 (469)
Q Consensus 130 ~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~ 208 (469)
..+++||+.++++..+. ....| ..++...++ .||+..........+.|++|++..............+... .
T Consensus 169 ~~v~~~d~~~g~~~~~~---~~~~p---~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~-p 241 (305)
T 3dr2_A 169 HSVYRLPPDGSPLQRMA---DLDHP---NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGL-P 241 (305)
T ss_dssp EEEEEECSSSCCCEEEE---EESSE---EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSC-C
T ss_pred CeEEEEcCCCCcEEEEe---cCCCC---cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCC-C
Confidence 57999999888877654 11111 233333344 5777653221111257999998765432211111111111 1
Q ss_pred eEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEec
Q 012184 209 HAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILT 247 (469)
Q Consensus 209 ~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~ 247 (469)
..++.. +++||+..+ ..+++||+.......+.
T Consensus 242 dgi~~d~~G~lwv~~~-------~gv~~~~~~g~~~~~~~ 274 (305)
T 3dr2_A 242 DGFCVDRGGWLWSSSG-------TGVCVFDSDGQLLGHIP 274 (305)
T ss_dssp CSEEECTTSCEEECCS-------SEEEEECTTSCEEEEEE
T ss_pred CeEEECCCCCEEEecC-------CcEEEECCCCCEEEEEE
Confidence 123322 466776542 24899999766555543
No 217
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.27 E-value=0.64 Score=36.81 Aligned_cols=36 Identities=17% Similarity=0.411 Sum_probs=17.0
Q ss_pred cchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 012184 386 STHSELSKELSSVQGQLVAERSRCFKLEAQIAELQK 421 (469)
Q Consensus 386 ~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~ 421 (469)
.++.++.+.++.++.+++.++.+...|+..+.+.+.
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~ 71 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQ 71 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334444444444444454444444455555544433
No 218
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=93.26 E-value=5.9 Score=37.76 Aligned_cols=72 Identities=8% Similarity=0.027 Sum_probs=40.2
Q ss_pred CCEEEEEec----CCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEE
Q 012184 215 DENWYIVGG----GDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVM 290 (469)
Q Consensus 215 ~~~l~v~GG----~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~ 290 (469)
++++|+.-+ +.+...-+.++++|+.+.+-..--.+.. . .++ +.+..++...||+.-+. .+++.++
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-~-----~~~-lavs~D~~~~ly~tn~~----~~~VsVi 359 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-E-----IDS-INVSQDEKPLLYALSTG----DKTLYIH 359 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-E-----ECE-EEECSSSSCEEEEEETT----TTEEEEE
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC-C-----cce-EEECCCCCeEEEEEcCC----CCeEEEE
Confidence 578888632 1222335789999999887654222211 1 111 22223333467775432 4579999
Q ss_pred ECCCCCC
Q 012184 291 RLKPRDI 297 (469)
Q Consensus 291 d~~~~~w 297 (469)
|..+..-
T Consensus 360 D~~t~k~ 366 (386)
T 3sjl_D 360 DAESGEE 366 (386)
T ss_dssp ETTTCCE
T ss_pred ECCCCcE
Confidence 9977653
No 219
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=93.23 E-value=1.7 Score=35.54 Aligned_cols=6 Identities=33% Similarity=0.435 Sum_probs=2.2
Q ss_pred HHHHHH
Q 012184 436 LRQQKS 441 (469)
Q Consensus 436 ~~q~~~ 441 (469)
+++..+
T Consensus 148 lQ~~~e 153 (168)
T 3o0z_A 148 LQQRLE 153 (168)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 220
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=93.23 E-value=0.57 Score=36.44 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHH
Q 012184 428 TIENEVQILRQQKSAF 443 (469)
Q Consensus 428 ~~e~e~~~~~q~~~~~ 443 (469)
+||.+++-+..++.-+
T Consensus 87 dLE~~iesL~eEl~FL 102 (119)
T 3ol1_A 87 DLERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555544
No 221
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=93.20 E-value=4 Score=37.25 Aligned_cols=187 Identities=11% Similarity=-0.004 Sum_probs=88.3
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCe----EEEeecCCCCCCCCcceEEEEECCE-EEEEeccCCCCCccCcEEEEE
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNL----CGVMETSGKVPVARGGHSVTLVGSR-LIIFGGEDRSRKLLNDVHFLD 136 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~----W~~~~~~g~~p~~r~~~~~~~~~~~-lyi~GG~~~~~~~~~~v~~~d 136 (469)
++.+++.|+.+ ..+.+||+.+.. ...+.. ........+..-++. +++.|+.+ ..+.+||
T Consensus 22 ~~~~l~~~~~d------~~v~iw~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d------g~i~~wd 85 (342)
T 1yfq_A 22 SKSLLLITSWD------GSLTVYKFDIQAKNVDLLQSLR----YKHPLLCCNFIDNTDLQIYVGTVQ------GEILKVD 85 (342)
T ss_dssp GGTEEEEEETT------SEEEEEEEETTTTEEEEEEEEE----CSSCEEEEEEEESSSEEEEEEETT------SCEEEEC
T ss_pred CCCEEEEEcCC------CeEEEEEeCCCCccccceeeee----cCCceEEEEECCCCCcEEEEEcCC------CeEEEEE
Confidence 44555666533 237777776655 322221 111111111222556 66677643 3489999
Q ss_pred C-CCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc-------eEeeeecCCCCCCCcc
Q 012184 137 L-ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE-------WSQPEIKGDLVTGRAG 208 (469)
Q Consensus 137 ~-~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~-------W~~~~~~~~~p~~r~~ 208 (469)
+ .+.....+.. . +....-.++.... +.+++.|+.+ ..+.+||+.+.. ...+. ....+..-
T Consensus 86 ~~~~~~~~~~~~--~-~~~~~v~~l~~~~-~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~v 153 (342)
T 1yfq_A 86 LIGSPSFQALTN--N-EANLGICRICKYG-DDKLIAASWD-----GLIEVIDPRNYGDGVIAVKNLNSN---NTKVKNKI 153 (342)
T ss_dssp SSSSSSEEECBS--C-CCCSCEEEEEEET-TTEEEEEETT-----SEEEEECHHHHTTBCEEEEESCSS---SSSSCCCE
T ss_pred eccCCceEeccc--c-CCCCceEEEEeCC-CCEEEEEcCC-----CeEEEEcccccccccccccCCeee---EEeeCCce
Confidence 9 8887654431 0 0111122333333 4466666654 357788765300 11111 11122222
Q ss_pred eEEEEECCEEEEEecCCCCCCcceEEEEECCC-Cc--EEEeccCCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCC
Q 012184 209 HAGITIDENWYIVGGGDNNNGCQETIVLNMTK-LA--WSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYN 284 (469)
Q Consensus 209 ~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~-~~--W~~~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~ 284 (469)
.+++...+. +++|+.+ ..+.+||+.+ .. ...... . .......+...+ ++.++++|+.++
T Consensus 154 ~~~~~~~~~-l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~-~-------~~~~i~~i~~~~~~~~~l~~~~~dg--- 216 (342)
T 1yfq_A 154 FTMDTNSSR-LIVGMNN-----SQVQWFRLPLCEDDNGTIEES-G-------LKYQIRDVALLPKEQEGYACSSIDG--- 216 (342)
T ss_dssp EEEEECSSE-EEEEEST-----TEEEEEESSCCTTCCCEEEEC-S-------CSSCEEEEEECSGGGCEEEEEETTS---
T ss_pred EEEEecCCc-EEEEeCC-----CeEEEEECCccccccceeeec-C-------CCCceeEEEECCCCCCEEEEEecCC---
Confidence 234444455 5555532 3688999877 33 222111 1 112233444555 556777787654
Q ss_pred ceEEEEECCC
Q 012184 285 NEVFVMRLKP 294 (469)
Q Consensus 285 ~~~~~~d~~~ 294 (469)
.+.+|+...
T Consensus 217 -~i~i~~~~~ 225 (342)
T 1yfq_A 217 -RVAVEFFDD 225 (342)
T ss_dssp -EEEEEECCT
T ss_pred -cEEEEEEcC
Confidence 355555543
No 222
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=93.19 E-value=7.3 Score=39.45 Aligned_cols=109 Identities=14% Similarity=0.084 Sum_probs=58.2
Q ss_pred ceEEEEccCCc--eeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe--E
Q 012184 16 VVMVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--C 91 (469)
Q Consensus 16 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W 91 (469)
.++.||..+++ |+.-...... ..+.......+.++.++.||+... ...++.+|..|++ |
T Consensus 79 ~v~AlD~~tG~~~W~~~~~~~~~----------~~~~~~~~~~g~a~~~~~v~~~t~-------dg~l~AlD~~TG~~~W 141 (582)
T 1flg_A 79 RLFALDAKTGKRLWTYNHRLPDD----------IRPCCDVVNRGAAIYGDKVFFGTL-------DASVVALNKNTGKVVW 141 (582)
T ss_dssp EEEEEESSSCCEEEEEECCCCTT----------CCCSSCSCCCCCEEETTEEEEEET-------TTEEEEEESSSCCEEE
T ss_pred CEEEEECCCCcEEEEEcCCCCcc----------cccccccCCCccEEECCEEEEEeC-------CCEEEEEECCCCCEEe
Confidence 58999998765 8775443210 000000112344567899888532 1349999999886 8
Q ss_pred EEeecCCCCCCCC--cceEEEEECC------EEEEEeccCCCCCccCcEEEEECCCCe--EEEe
Q 012184 92 GVMETSGKVPVAR--GGHSVTLVGS------RLIIFGGEDRSRKLLNDVHFLDLETMT--WDAV 145 (469)
Q Consensus 92 ~~~~~~g~~p~~r--~~~~~~~~~~------~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~ 145 (469)
+.-.. .+... ...+-++.++ .+| +|...........++.||+.|++ |+..
T Consensus 142 ~~~~~---~~~~~~~~~~sP~v~~~~~~G~~~v~-vg~~~~e~~~~g~v~alD~~tG~~~W~~~ 201 (582)
T 1flg_A 142 KKKFA---DHGAGYTMTGAPTIVKDGKTGKVLLI-HGSSGDEFGVVGRLFARDPDTGEEIWMRP 201 (582)
T ss_dssp EEECS---CGGGTCBCCSCCEEEECTTTCCEEEE-ECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred eecCC---CCCcCcccccCCEEeCCCcCCcEEEE-EeccccccCCCCEEEEEECCCCCEEeecC
Confidence 76431 11110 1112233445 454 44322111124569999998875 8654
No 223
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=93.14 E-value=5.2 Score=36.78 Aligned_cols=66 Identities=14% Similarity=0.104 Sum_probs=36.8
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
++.+++.|+.++ .+..||+.++.-..... ..........++.+ ++..++.|+.+ ..+.+||+.+
T Consensus 127 ~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~ 192 (366)
T 3k26_A 127 DPNLLLSVSKDH------ALRLWNIQTDTLVAIFG--GVEGHRDEVLSADYDLLGEKIMSCGMD------HSLKLWRINS 192 (366)
T ss_dssp CTTEEEEEETTS------CEEEEETTTTEEEEEEC--STTSCSSCEEEEEECTTSSEEEEEETT------SCEEEEESCS
T ss_pred CCCEEEEEeCCC------eEEEEEeecCeEEEEec--ccccccCceeEEEECCCCCEEEEecCC------CCEEEEECCC
Confidence 556777776532 28999998886544331 11112222233333 34566666643 2488888876
Q ss_pred Ce
Q 012184 140 MT 141 (469)
Q Consensus 140 ~~ 141 (469)
..
T Consensus 193 ~~ 194 (366)
T 3k26_A 193 KR 194 (366)
T ss_dssp HH
T ss_pred Cc
Confidence 53
No 224
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.13 E-value=0.58 Score=56.40 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=10.8
Q ss_pred EEEEccCCceeeeee
Q 012184 18 MVFDLRSLAWSNLRL 32 (469)
Q Consensus 18 ~~~d~~~~~W~~~~~ 32 (469)
+.+|+.++.|.....
T Consensus 1252 y~~~~~~~~w~~W~~ 1266 (3245)
T 3vkg_A 1252 YSVSIDDANWSLWKN 1266 (3245)
T ss_dssp EEECTTTCSEEETTC
T ss_pred EEEECCCCeeeehhh
Confidence 456888899977544
No 225
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=93.13 E-value=8.2 Score=39.22 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=58.8
Q ss_pred ceEEEEc-cCC--ceeeeeecccccCCccccCCCCCCCCCC---cCeeeEE--ECCE----EEEEccccCCCCCcceEEE
Q 012184 16 VVMVFDL-RSL--AWSNLRLETELDADKTEDSGLLEVLPPM---SDHCMVK--WGTK----LLILGGHYKKSSDSMIVRF 83 (469)
Q Consensus 16 ~~~~~d~-~~~--~W~~~~~~~~~~~~~~~~~~~~~~p~~r---~~~~~~~--~~~~----iy~~GG~~~~~~~~~~~~~ 83 (469)
.++.||. .++ .|+.-...... ..+..+ .....++ .++. ||+... ...++.
T Consensus 74 ~v~AlD~~~tG~~lW~~~~~~~~~-----------~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~-------dg~l~A 135 (599)
T 1w6s_A 74 NTFALGLDDPGTILWQDKPKQNPA-----------ARAVACCDLVNRGLAYWPGDGKTPALILKTQL-------DGNVAA 135 (599)
T ss_dssp CEEEEETTCTTSEEEEECCCCCGG-----------GGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-------TSEEEE
T ss_pred EEEEEeCCCCCcEEEEECCCCCcc-----------ccccccccccccceEEEecCCcceeEEEEEcC-------CCEEEE
Confidence 6899999 776 48875443210 001011 1223444 5666 877532 124999
Q ss_pred EECCCCe--EEEeecCCCCCCC-CcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEee
Q 012184 84 IDLETNL--CGVMETSGKVPVA-RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVE 146 (469)
Q Consensus 84 ~d~~t~~--W~~~~~~g~~p~~-r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~~ 146 (469)
+|..|++ |+.-.. ..... ....+-++.++.+|+-.+ .........++.||..|++ |+.-.
T Consensus 136 lDa~TG~~~W~~~~~--~~~~~~~~~ssP~v~~g~V~vg~~-g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 136 LNAETGETVWKVENS--DIKVGSTLTIAPYVVKDKVIIGSS-GAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EETTTCCEEEEEECC--CGGGTCBCCSCCEEETTEEEECCB-CGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EECCCCCEEEeecCC--CCCccceeecCCEEECCEEEEEec-ccccCCCCeEEEEECCCCcEEEEEcC
Confidence 9998886 876431 11001 112223446787765332 1111124569999999875 87653
No 226
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=93.10 E-value=1.4 Score=42.65 Aligned_cols=107 Identities=13% Similarity=0.091 Sum_probs=51.9
Q ss_pred CcEEEEEecCCCCcccCcEEEEECCCCc-eEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCC
Q 012184 165 NRYLIVFGGCSHSIFFNDLHVLDLQTNE-WSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKL 241 (469)
Q Consensus 165 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~-W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~ 241 (469)
++.+++.|+.+ ..|.+||+.+.. ...+.... .....-.+++.. +..+++.|+.+ ..+.+||+.+.
T Consensus 243 ~~~~l~s~~~d-----g~i~i~d~~~~~~~~~~~~~~--~~~~~v~~i~~~p~~~~~l~tg~~d-----g~v~vwd~~~~ 310 (430)
T 2xyi_A 243 HESLFGSVADD-----QKLMIWDTRNNNTSKPSHTVD--AHTAEVNCLSFNPYSEFILATGSAD-----KTVALWDLRNL 310 (430)
T ss_dssp CTTEEEEEETT-----SEEEEEETTCSCSSSCSEEEE--CCSSCEEEEEECSSCTTEEEEEETT-----SEEEEEETTCT
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCCCCcceeEee--cCCCCeEEEEeCCCCCCEEEEEeCC-----CeEEEEeCCCC
Confidence 44566666644 468899987652 11111000 111111122222 23478888753 35788888653
Q ss_pred cEEEeccCCCCCCCCCCCcceEEEEEcC-CcEEEEEeccCCCCCceEEEEECCC
Q 012184 242 AWSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRLKP 294 (469)
Q Consensus 242 ~W~~~~~~~~~~p~~r~~~s~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~d~~~ 294 (469)
.- .+..+.. ....+..+...+ +..+++.||.++ .+.+||+..
T Consensus 311 ~~-~~~~~~~------h~~~v~~i~~sp~~~~~l~s~~~d~----~i~iwd~~~ 353 (430)
T 2xyi_A 311 KL-KLHSFES------HKDEIFQVQWSPHNETILASSGTDR----RLHVWDLSK 353 (430)
T ss_dssp TS-CSEEEEC------CSSCEEEEEECSSCTTEEEEEETTS----CCEEEEGGG
T ss_pred CC-CeEEeec------CCCCEEEEEECCCCCCEEEEEeCCC----cEEEEeCCC
Confidence 20 0111111 112233444444 336777777655 377788754
No 227
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=93.04 E-value=1.4 Score=33.73 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=17.9
Q ss_pred hhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 012184 379 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQ 415 (469)
Q Consensus 379 ~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~ 415 (469)
-++++++.+..--++++..++.++...|...++.+..
T Consensus 46 gKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~ 82 (167)
T 4gkw_A 46 GKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQL 82 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444444444444455555555555555544444443
No 228
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=92.90 E-value=0.64 Score=34.24 Aligned_cols=31 Identities=26% Similarity=0.364 Sum_probs=19.0
Q ss_pred chhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012184 387 THSELSKELSSVQGQLVAERSRCFKLEAQIA 417 (469)
Q Consensus 387 ~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~ 417 (469)
.++++++|+...+.||...++++.+.+++.+
T Consensus 36 ~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E 66 (107)
T 2k48_A 36 TLQELQENITAHEQQLVTARQKLKDAEKAVE 66 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445666666666666666666666665554
No 229
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=92.88 E-value=6.5 Score=37.21 Aligned_cols=71 Identities=11% Similarity=0.112 Sum_probs=37.2
Q ss_pred CCEEEEEecCC----CCCCcceEEEEECCCCcEE-EeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEE
Q 012184 215 DENWYIVGGGD----NNNGCQETIVLNMTKLAWS-ILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFV 289 (469)
Q Consensus 215 ~~~l~v~GG~~----~~~~~~d~~~~d~~~~~W~-~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~ 289 (469)
++++|+..... .....++++++|+.+.+-. .++ ... .| +++ .+..++...+|+..+. .+++.+
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~-~p-----~~i-~~s~Dg~~~l~v~~~~----~~~V~V 345 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGH-DV-----DAI-SVAQDGGPDLYALSAG----TEVLHI 345 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCC-Cc-----CeE-EECCCCCeEEEEEcCC----CCeEEE
Confidence 46788875321 1123568999999887653 332 111 11 222 2222222145554422 357999
Q ss_pred EECCCCCC
Q 012184 290 MRLKPRDI 297 (469)
Q Consensus 290 ~d~~~~~w 297 (469)
+|+.+.+-
T Consensus 346 iD~~t~~v 353 (373)
T 2mad_H 346 YDAGAGDQ 353 (373)
T ss_pred EECCCCCE
Confidence 99876543
No 230
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.85 E-value=0.45 Score=57.33 Aligned_cols=11 Identities=0% Similarity=0.129 Sum_probs=5.5
Q ss_pred EEECCCCeEEE
Q 012184 83 FIDLETNLCGV 93 (469)
Q Consensus 83 ~~d~~t~~W~~ 93 (469)
.+|+.++.|..
T Consensus 1253 ~~~~~~~~w~~ 1263 (3245)
T 3vkg_A 1253 SVSIDDANWSL 1263 (3245)
T ss_dssp EECTTTCSEEE
T ss_pred EEECCCCeeee
Confidence 33455555554
No 231
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=92.84 E-value=0.1 Score=52.92 Aligned_cols=9 Identities=0% Similarity=-0.064 Sum_probs=5.4
Q ss_pred eEEEEECCC
Q 012184 232 ETIVLNMTK 240 (469)
Q Consensus 232 d~~~~d~~~ 240 (469)
.|.+|+..+
T Consensus 224 GI~v~~~~~ 232 (575)
T 2i1j_A 224 GLNIYEKDD 232 (575)
T ss_dssp EEEEEETTC
T ss_pred eeEEEeCCC
Confidence 466776654
No 232
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=92.79 E-value=0.45 Score=34.56 Aligned_cols=12 Identities=0% Similarity=0.210 Sum_probs=4.5
Q ss_pred hhhhhhhcchhh
Q 012184 379 EKIDEVNSTHSE 390 (469)
Q Consensus 379 ~~~~~~~~~~~e 390 (469)
.++..+++.+..
T Consensus 9 ~~L~~aEeaL~~ 20 (94)
T 3jsv_C 9 QQLQQAEEALVA 20 (94)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 233
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=92.73 E-value=5.3 Score=35.79 Aligned_cols=186 Identities=10% Similarity=0.073 Sum_probs=83.2
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCe-EEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNL-CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM 140 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~-W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~ 140 (469)
++.+++.|+.++. +..+|+.... ...+. ..........+..+++.+++.|+.+ ..+.+||....
T Consensus 70 ~~~~l~~~~~dg~------i~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~l~~~~~d------~~i~~~d~~~~ 134 (313)
T 3odt_A 70 EKELLLFGGKDTM------INGVPLFATSGEDPLY---TLIGHQGNVCSLSFQDGVVISGSWD------KTAKVWKEGSL 134 (313)
T ss_dssp TTTEEEEEETTSC------EEEEETTCCTTSCC-C---EECCCSSCEEEEEEETTEEEEEETT------SEEEEEETTEE
T ss_pred CCCEEEEecCCCe------EEEEEeeecCCCCccc---chhhcccCEEEEEecCCEEEEEeCC------CCEEEEcCCcE
Confidence 5666667664432 6666665432 11111 0111112223333455566666643 34788883222
Q ss_pred eEEEeeeCCCCCCCCCCceEEEEc-CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEE
Q 012184 141 TWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENW 218 (469)
Q Consensus 141 ~W~~~~~~g~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l 218 (469)
.... . . .......+.... ++..++.|+.+ ..+.+||.. .-.... ..+....-.+++.. ++.
T Consensus 135 ~~~~-~---~--~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~--~~~~~~---~~~~~~~i~~~~~~~~~~- 197 (313)
T 3odt_A 135 VYNL-Q---A--HNASVWDAKVVSFSENKFLTASAD-----KTIKLWQND--KVIKTF---SGIHNDVVRHLAVVDDGH- 197 (313)
T ss_dssp EEEE-E---C--CSSCEEEEEEEETTTTEEEEEETT-----SCEEEEETT--EEEEEE---CSSCSSCEEEEEEEETTE-
T ss_pred EEec-c---c--CCCceeEEEEccCCCCEEEEEECC-----CCEEEEecC--ceEEEE---eccCcccEEEEEEcCCCe-
Confidence 2211 1 1 111112223222 34466666644 357788832 211111 11111222233333 455
Q ss_pred EEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCC
Q 012184 219 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI 297 (469)
Q Consensus 219 ~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w 297 (469)
++.|+.+ ..+.+||+.+..-... +.... ..+..+...+++. ++.|+.++ .+.+||+.+...
T Consensus 198 ~~~~~~d-----g~i~i~d~~~~~~~~~--~~~~~------~~i~~~~~~~~~~-l~~~~~dg----~v~iwd~~~~~~ 258 (313)
T 3odt_A 198 FISCSND-----GLIKLVDMHTGDVLRT--YEGHE------SFVYCIKLLPNGD-IVSCGEDR----TVRIWSKENGSL 258 (313)
T ss_dssp EEEEETT-----SEEEEEETTTCCEEEE--EECCS------SCEEEEEECTTSC-EEEEETTS----EEEEECTTTCCE
T ss_pred EEEccCC-----CeEEEEECCchhhhhh--hhcCC------ceEEEEEEecCCC-EEEEecCC----EEEEEECCCCce
Confidence 6666643 3588999876543321 11111 1233344444444 55666544 588888876543
No 234
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=92.72 E-value=1.4 Score=40.35 Aligned_cols=92 Identities=18% Similarity=0.111 Sum_probs=48.6
Q ss_pred cEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCc-EEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcce
Q 012184 131 DVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH 209 (469)
Q Consensus 131 ~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~ 209 (469)
.+++||+.+.+-..+... +.....+.++...++ ++|+. .+.+++||+.+.+-......+ ....
T Consensus 220 ~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~--------~~~v~~~d~~~~~~~~~~~~~-----~~~~ 283 (337)
T 1pby_B 220 GLLTMDLETGEMAMREVR---IMDVFYFSTAVNPAKTRAFGA--------YNVLESFDLEKNASIKRVPLP-----HSYY 283 (337)
T ss_dssp EEEEEETTTCCEEEEEEE---ECSSCEEEEEECTTSSEEEEE--------ESEEEEEETTTTEEEEEEECS-----SCCC
T ss_pred ceEEEeCCCCCceEeecC---CCCCceeeEEECCCCCEEEEe--------CCeEEEEECCCCcCcceecCC-----Ccee
Confidence 589999998876533321 111122233333344 45554 267999999877643322111 1223
Q ss_pred EEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcE
Q 012184 210 AGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAW 243 (469)
Q Consensus 210 ~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W 243 (469)
+++.. +++.+++++. .+.+.+||+.+..-
T Consensus 284 ~~~~s~dg~~l~~~~~-----~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 284 SVNVSTDGSTVWLGGA-----LGDLAAYDAETLEK 313 (337)
T ss_dssp EEEECTTSCEEEEESB-----SSEEEEEETTTCCE
T ss_pred eEEECCCCCEEEEEcC-----CCcEEEEECcCCcE
Confidence 34433 3443333442 25789999987654
No 235
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.66 E-value=2.2 Score=31.32 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=29.0
Q ss_pred hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184 373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM 422 (469)
Q Consensus 373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~ 422 (469)
+.+.++.++..++..+...+.++..++.++..++.+....+.....++++
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~E 55 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKE 55 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666655555554444444433
No 236
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=92.47 E-value=1.3 Score=33.11 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 012184 434 QILRQQKSAFEQEME 448 (469)
Q Consensus 434 ~~~~q~~~~~~~~~~ 448 (469)
+.++.++++++++++
T Consensus 86 Ekl~~eKe~L~~ql~ 100 (110)
T 2v4h_A 86 EKLVEKKEYLQEQLE 100 (110)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHH
Confidence 334444444444443
No 237
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=92.47 E-value=0.69 Score=31.89 Aligned_cols=33 Identities=15% Similarity=0.191 Sum_probs=17.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 012184 418 ELQKMLESSQTIENEVQILRQQKSAFEQEMERA 450 (469)
Q Consensus 418 e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~~~ 450 (469)
|++++...++.+++++++...+++.+..++++.
T Consensus 34 ELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 34 ELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444555555555555555555555544
No 238
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=92.42 E-value=1.4 Score=43.15 Aligned_cols=50 Identities=8% Similarity=0.028 Sum_probs=31.3
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL 90 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~ 90 (469)
.+|+||..+.+.....=. + .+. --++....+++|+|-|. ..|+||..+.+
T Consensus 168 ~yw~yd~~~~~~~~~~w~-g---------------i~~-iDAA~~~~g~~YfFkG~--------~y~rfd~~~~~ 217 (460)
T 1qhu_A 168 RKWFWDLTTGTKKERSWP-A---------------VGN-CTSALRWLGRYYCFQGN--------QFLRFNPVSGE 217 (460)
T ss_dssp EEEEEETTTTEEEEECCT-T---------------SCC-CSEEEEETTEEEEEETT--------EEEEECTTTCC
T ss_pred cEEEEecccceeecccCC-C---------------CCc-cchheeeCCceEEEECC--------EEEEEcCccCc
Confidence 678999887654421111 1 122 35666678999999773 27888876543
No 239
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=92.36 E-value=2.3 Score=32.26 Aligned_cols=50 Identities=22% Similarity=0.304 Sum_probs=23.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHH
Q 012184 398 VQGQLVAERSRCFKLEAQIAELQKMLESSQ-TIENEVQILRQQKSAFEQEM 447 (469)
Q Consensus 398 ~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~-~~e~e~~~~~q~~~~~~~~~ 447 (469)
-..+.+.+.++++.-|+.+.++++...+.+ ..+.++.++-...+++..++
T Consensus 43 ~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL 93 (112)
T 1x79_B 43 SSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEEL 93 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555666655555533333 34444444444444444333
No 240
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=92.33 E-value=6.1 Score=35.52 Aligned_cols=136 Identities=15% Similarity=0.109 Sum_probs=67.1
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 93 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~ 93 (469)
.+..+|+.+++-...-.... ....-.++.+ ++..++.|+.++ .+..+|+.+++-..
T Consensus 46 tV~iWd~~tg~~~~~~~~~~----------------~~~~V~~v~~~~~~~~l~sgs~Dg------~v~iw~~~~~~~~~ 103 (318)
T 4ggc_A 46 SVYLWSASSGDILQLLQMEQ----------------PGEYISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRLR 103 (318)
T ss_dssp EEEEEETTTCCEEEEEECCS----------------TTCCEEEEEECTTSSEEEEEETTS------EEEEEETTTTEEEE
T ss_pred EEEEEECCCCCEEEEEEecC----------------CCCeEEEEEECCCCCEEEEEECCC------cEEEeecCCceeEE
Confidence 67888888877654433211 1111222333 566777777543 38889999887544
Q ss_pred eecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEec
Q 012184 94 METSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG 173 (469)
Q Consensus 94 ~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG 173 (469)
... .... ...+....+.+++.|+... .+..++..+.........+ ............++..++.|+
T Consensus 104 ~~~---~h~~--~~~~~~~~~~~l~s~~~~~------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~ 169 (318)
T 4ggc_A 104 NMT---SHSA--RVGSLSWNSYILSSGSRSG------HIHHHDVRVAEHHVATLSG---HSQEVCGLRWAPDGRHLASGG 169 (318)
T ss_dssp EEE---CCSS--CEEEEEEETTEEEEEETTS------EEEEEETTSSSCEEEEEEC---CSSCEEEEEECTTSSEEEEEE
T ss_pred Eec---Cccc--eEEEeecCCCEEEEEecCC------ceEeeecCCCceeEEEEcC---ccCceEEEEEcCCCCEEEEEe
Confidence 331 1111 2223334455555555432 3455555544332222111 111112222233455666666
Q ss_pred CCCCcccCcEEEEECCCCc
Q 012184 174 CSHSIFFNDLHVLDLQTNE 192 (469)
Q Consensus 174 ~~~~~~~~~i~~~d~~~~~ 192 (469)
.+ ..+.++|+.+.+
T Consensus 170 ~d-----~~i~iwd~~~~~ 183 (318)
T 4ggc_A 170 ND-----NLVNVWPSAPGE 183 (318)
T ss_dssp TT-----SCEEEEESSCBT
T ss_pred cC-----cceeEEECCCCc
Confidence 54 347888887654
No 241
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=92.31 E-value=12 Score=39.01 Aligned_cols=180 Identities=10% Similarity=0.041 Sum_probs=93.6
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME 95 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~ 95 (469)
.+.+||+.+.++... .. .....-.+++..++.|++... . -+++||+.++++..+.
T Consensus 83 Gl~~yd~~~~~f~~~-~~----------------~~~~~i~~i~~~~g~lWigt~---~-----Gl~~~~~~~~~~~~~~ 137 (758)
T 3ott_A 83 GILVYNYRADRYEQP-ET----------------DFPTDVRTMALQGDTLWLGAL---N-----GLYTYQLQSRKLTSFD 137 (758)
T ss_dssp EEEEEETTTTEECCC-SC----------------CCCSCEEEEEEETTEEEEEET---T-----EEEEEETTTCCEEEEC
T ss_pred CeEEEeCCCCEEECc-cc----------------CCCceEEEEEecCCcEEEEcC---C-----cceeEeCCCCeEEEec
Confidence 578899988877651 11 011111223345788877521 1 3899999999988773
Q ss_pred cC-CCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCC-CCCCCceEEEEcC-cEEEEE
Q 012184 96 TS-GKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP-APRYDHSAALHAN-RYLIVF 171 (469)
Q Consensus 96 ~~-g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p-~~r~~~~~~~~~~-~~l~v~ 171 (469)
.. ..+|... -.+++.. ++.|++.. .+-+++||+.+..+.......... ....-.+++...+ +.|+|
T Consensus 138 ~~~~~l~~~~-i~~i~~d~~g~lWigt--------~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWi- 207 (758)
T 3ott_A 138 TRRNGLPNNT-IYSIIRTKDNQIYVGT--------YNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWI- 207 (758)
T ss_dssp HHHHCCSCSC-EEEEEECTTCCEEEEE--------TTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEE-
T ss_pred cCCCCcCCCe-EEEEEEcCCCCEEEEe--------CCCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEE-
Confidence 21 1122221 1222222 46787731 124889999999887653211100 0111122333322 45676
Q ss_pred ecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEec
Q 012184 172 GGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILT 247 (469)
Q Consensus 172 GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~ 247 (469)
|- . +-+++||+.+.++..... .+. ..-.+++.. ++.|+|-.. +-+++||..+..+..+.
T Consensus 208 gt-~-----~Gl~~~~~~~~~~~~~~~---l~~-~~i~~i~~d~~g~lWigT~-------~Gl~~~~~~~~~~~~~~ 267 (758)
T 3ott_A 208 GT-E-----GYLFQYFPSTGQIKQTEA---FHN-NSIKSLALDGNGDLLAGTD-------NGLYVYHNDTTPLQHII 267 (758)
T ss_dssp EE-E-----EEEEEEETTTTEEEEEEE---EEE-EEEEEEEECTTCCEEEEET-------TEEEEECCTTSCCEEEC
T ss_pred EE-C-----CCCeEEcCCCCeEEeccC---CCC-CeEEEEEEcCCCCEEEEeC-------CceeEEecCCCcEEEEE
Confidence 21 1 248899999888876431 111 111222222 345665321 24788998887776654
No 242
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=92.31 E-value=11 Score=38.26 Aligned_cols=124 Identities=13% Similarity=0.076 Sum_probs=66.9
Q ss_pred eeEEECCEEEEEccccCCCCCcceEEEEECCCCe--EEEeecCCCCCCC---CcceEEEEECCEEEEEeccCCCCCccCc
Q 012184 57 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVA---RGGHSVTLVGSRLIIFGGEDRSRKLLND 131 (469)
Q Consensus 57 ~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~---r~~~~~~~~~~~lyi~GG~~~~~~~~~~ 131 (469)
+-++.++.||+.... +.++.+|..|++ |+.-........+ ....+.++.++.||+... ...
T Consensus 63 ~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~-------dg~ 128 (582)
T 1flg_A 63 QAIVSDGVIYVTASY-------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-------DAS 128 (582)
T ss_dssp CCEEETTEEEEEETT-------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-------TTE
T ss_pred ccEEECCEEEEEcCC-------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-------CCE
Confidence 446679999998652 129999998886 8875421110000 112334567888887421 345
Q ss_pred EEEEECCCCe--EEEeeeCCCCCCCCCCceEEEEcC---c--EEEEEecCCC-CcccCcEEEEECCCCc--eEee
Q 012184 132 VHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHAN---R--YLIVFGGCSH-SIFFNDLHVLDLQTNE--WSQP 196 (469)
Q Consensus 132 v~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~---~--~l~v~GG~~~-~~~~~~i~~~d~~~~~--W~~~ 196 (469)
++.+|..|++ |+.-............ +-++.++ + .+|+ |.... ......++.||+.+++ |...
T Consensus 129 l~AlD~~TG~~~W~~~~~~~~~~~~~~~-sP~v~~~~~~G~~~v~v-g~~~~e~~~~g~v~alD~~tG~~~W~~~ 201 (582)
T 1flg_A 129 VVALNKNTGKVVWKKKFADHGAGYTMTG-APTIVKDGKTGKVLLIH-GSSGDEFGVVGRLFARDPDTGEEIWMRP 201 (582)
T ss_dssp EEEEESSSCCEEEEEECSCGGGTCBCCS-CCEEEECTTTCCEEEEE-CCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred EEEEECCCCCEEeeecCCCCCcCccccc-CCEEeCCCcCCcEEEEE-eccccccCCCCEEEEEECCCCCEEeecC
Confidence 9999998875 8764211000001111 2223322 1 4444 43211 1223579999998775 8753
No 243
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=92.15 E-value=8.4 Score=36.75 Aligned_cols=109 Identities=11% Similarity=0.069 Sum_probs=55.3
Q ss_pred CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc
Q 012184 113 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE 192 (469)
Q Consensus 113 ~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~ 192 (469)
++.+++.|+.+ ..+.+||+.+.+-...-. +. +....-.+++...++.+++.|+.+ ..+.+||+.+..
T Consensus 181 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~-~~-~h~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~ 247 (437)
T 3gre_A 181 EKSLLVALTNL------SRVIIFDIRTLERLQIIE-NS-PRHGAVSSICIDEECCVLILGTTR-----GIIDIWDIRFNV 247 (437)
T ss_dssp SCEEEEEEETT------SEEEEEETTTCCEEEEEE-CC-GGGCCEEEEEECTTSCEEEEEETT-----SCEEEEETTTTE
T ss_pred CCCEEEEEeCC------CeEEEEeCCCCeeeEEEc-cC-CCCCceEEEEECCCCCEEEEEcCC-----CeEEEEEcCCcc
Confidence 36677777643 358999998876533221 10 011112223333356677777755 358899998765
Q ss_pred eEeeeecCCCCCCCcceEEEEE-----CCEEEEEecCCCCCCcceEEEEECCCCc
Q 012184 193 WSQPEIKGDLVTGRAGHAGITI-----DENWYIVGGGDNNNGCQETIVLNMTKLA 242 (469)
Q Consensus 193 W~~~~~~~~~p~~r~~~~~~~~-----~~~l~v~GG~~~~~~~~d~~~~d~~~~~ 242 (469)
....-. .+....-.+++.. ++.+++.|+.+ ..+.+||+.+..
T Consensus 248 ~~~~~~---~~~~~~v~~~~~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~ 294 (437)
T 3gre_A 248 LIRSWS---FGDHAPITHVEVCQFYGKNSVIVVGGSSK-----TFLTIWNFVKGH 294 (437)
T ss_dssp EEEEEB---CTTCEEEEEEEECTTTCTTEEEEEEESTT-----EEEEEEETTTTE
T ss_pred EEEEEe---cCCCCceEEEEeccccCCCccEEEEEcCC-----CcEEEEEcCCCc
Confidence 433210 0111111112111 23455555532 257888887665
No 244
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=92.07 E-value=7.9 Score=36.29 Aligned_cols=66 Identities=17% Similarity=0.253 Sum_probs=37.0
Q ss_pred CCEEEEEecCC-----CCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEE
Q 012184 215 DENWYIVGGGD-----NNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFV 289 (469)
Q Consensus 215 ~~~l~v~GG~~-----~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~ 289 (469)
++.+|+....+ .....+.++++|+.+.+-. ..++.. . .+++ .+..+ +.+||+.++ +.+.+
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v--~~i~~~----~-p~~i-a~spd-g~~l~v~n~------~~v~v 329 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV--ARIPGR----D-ALSM-TIDQQ-RNLMLTLDG------GNVNV 329 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE--EEEECT----T-CCEE-EEETT-TTEEEEECS------SCEEE
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCcEE--EEEecC----C-eeEE-EECCC-CCEEEEeCC------CeEEE
Confidence 47888875411 1123468999999887633 322211 1 1222 22223 457776553 56999
Q ss_pred EECCCC
Q 012184 290 MRLKPR 295 (469)
Q Consensus 290 ~d~~~~ 295 (469)
||+.+.
T Consensus 330 ~D~~t~ 335 (361)
T 2oiz_A 330 YDISQP 335 (361)
T ss_dssp EECSSS
T ss_pred EECCCC
Confidence 998776
No 245
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=92.03 E-value=6.6 Score=35.29 Aligned_cols=184 Identities=11% Similarity=0.053 Sum_probs=91.7
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCe--EEEeecCCCCCCCCcceEEEE-ECCEEEEEeccCCCCCccCcEEEEECC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLE 138 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~-~~~~lyi~GG~~~~~~~~~~v~~~d~~ 138 (469)
.+++++.|..+ ..+..+|..+++ |+.-. +.....+.+.. -++.+|+.+ .+.++.||+
T Consensus 4 ~~~~lv~~~~~------~~v~~~d~~tG~~~w~~~~-----~~~~~~~~~~~~pdG~ilvs~--------~~~V~~~d~- 63 (276)
T 3no2_A 4 PQHLLVGGSGW------NKIAIINKDTKEIVWEYPL-----EKGWECNSVAATKAGEILFSY--------SKGAKMITR- 63 (276)
T ss_dssp CCEEEEECTTC------SEEEEEETTTTEEEEEEEC-----CTTCCCCEEEECTTSCEEEEC--------BSEEEEECT-
T ss_pred CCcEEEeeCCC------CEEEEEECCCCeEEEEeCC-----CccCCCcCeEECCCCCEEEeC--------CCCEEEECC-
Confidence 35677776532 348899998887 65443 11112233333 366777732 345999998
Q ss_pred CC--eEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc-eEeeeecCCC--CCCCcceEEEE
Q 012184 139 TM--TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE-WSQPEIKGDL--VTGRAGHAGIT 213 (469)
Q Consensus 139 t~--~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~-W~~~~~~~~~--p~~r~~~~~~~ 213 (469)
++ .|+.-. +.....+++....++.+++..... ...++.+|++... |+... .... +......+...
T Consensus 64 ~G~~~W~~~~-----~~~~~~~~~~~~~dG~~lv~~~~~----~~~v~~vd~~Gk~l~~~~~-~~~~~~~~~~~~~v~~~ 133 (276)
T 3no2_A 64 DGRELWNIAA-----PAGCEMQTARILPDGNALVAWCGH----PSTILEVNMKGEVLSKTEF-ETGIERPHAQFRQINKN 133 (276)
T ss_dssp TSCEEEEEEC-----CTTCEEEEEEECTTSCEEEEEEST----TEEEEEECTTSCEEEEEEE-CCSCSSGGGSCSCCEEC
T ss_pred CCCEEEEEcC-----CCCccccccEECCCCCEEEEecCC----CCEEEEEeCCCCEEEEEec-cCCCCcccccccCceEC
Confidence 44 365432 111223445555566666654321 2467888875442 44321 1111 11111122333
Q ss_pred ECCEEEEEecCCCCCCcceEEEEECCC-CcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEEC
Q 012184 214 IDENWYIVGGGDNNNGCQETIVLNMTK-LAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRL 292 (469)
Q Consensus 214 ~~~~l~v~GG~~~~~~~~d~~~~d~~~-~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~ 292 (469)
.++.+++.... ...+..||+.- ..|+.-. + ..| ++. ...+++.+++++..++ .++.+|+
T Consensus 134 ~~G~~lv~~~~-----~~~v~~~d~~G~~~w~~~~--~-~~~-----~~~---~~~~~g~~~v~~~~~~----~v~~~d~ 193 (276)
T 3no2_A 134 KKGNYLVPLFA-----TSEVREIAPNGQLLNSVKL--S-GTP-----FSS---AFLDNGDCLVACGDAH----CFVQLNL 193 (276)
T ss_dssp TTSCEEEEETT-----TTEEEEECTTSCEEEEEEC--S-SCC-----CEE---EECTTSCEEEECBTTS----EEEEECT
T ss_pred CCCCEEEEecC-----CCEEEEECCCCCEEEEEEC--C-CCc-----cce---eEcCCCCEEEEeCCCC----eEEEEeC
Confidence 35666665432 23688898862 3355422 1 111 222 2223456666665432 4788888
Q ss_pred CCC
Q 012184 293 KPR 295 (469)
Q Consensus 293 ~~~ 295 (469)
.+.
T Consensus 194 ~tG 196 (276)
T 3no2_A 194 ESN 196 (276)
T ss_dssp TTC
T ss_pred cCC
Confidence 744
No 246
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=91.98 E-value=7.6 Score=35.87 Aligned_cols=153 Identities=6% Similarity=0.000 Sum_probs=79.1
Q ss_pred ECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECC-
Q 012184 61 WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLE- 138 (469)
Q Consensus 61 ~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~- 138 (469)
-++.+|+.|.. . .+++-+=.-.+|..+.. +....-+.++.. ++.+|++|-. ..+++-+-.
T Consensus 131 ~~~~~~~~~~~---g----~v~~S~DgG~tW~~~~~----~~~~~~~~~~~~~~~~~~~~g~~-------G~~~~S~d~g 192 (327)
T 2xbg_A 131 GNGSAEMITNV---G----AIYRTKDSGKNWQALVQ----EAIGVMRNLNRSPSGEYVAVSSR-------GSFYSTWEPG 192 (327)
T ss_dssp ETTEEEEEETT---C----CEEEESSTTSSEEEEEC----SCCCCEEEEEECTTSCEEEEETT-------SSEEEEECTT
T ss_pred CCCCEEEEeCC---c----cEEEEcCCCCCCEEeec----CCCcceEEEEEcCCCcEEEEECC-------CcEEEEeCCC
Confidence 46788887641 1 14443223457999873 222233444433 3566666521 225554322
Q ss_pred CCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECC-CCceEeeeecCCCCCCCcceEEEEE-CC
Q 012184 139 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ-TNEWSQPEIKGDLVTGRAGHAGITI-DE 216 (469)
Q Consensus 139 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~-~~~W~~~~~~~~~p~~r~~~~~~~~-~~ 216 (469)
..+|+.+.. +.+...+.++...++.+|+.+..+ .+++.+.. ..+|..+.. +.++.....++++.. ++
T Consensus 193 G~tW~~~~~----~~~~~~~~~~~~~~g~~~~~~~~G------~~~~s~~D~G~tW~~~~~-~~~~~~~~~~~v~~~~~~ 261 (327)
T 2xbg_A 193 QTAWEPHNR----TTSRRLHNMGFTPDGRLWMIVNGG------KIAFSDPDNSENWGELLS-PLRRNSVGFLDLAYRTPN 261 (327)
T ss_dssp CSSCEEEEC----CSSSCEEEEEECTTSCEEEEETTT------EEEEEETTEEEEECCCBC-TTSSCCSCEEEEEESSSS
T ss_pred CCceeECCC----CCCCccceeEECCCCCEEEEeCCc------eEEEecCCCCCeeEeccC-CcccCCcceEEEEecCCC
Confidence 578988742 334444555554567788776421 24444322 457987642 112333333444444 45
Q ss_pred EEEEEecCCCCCCcceEEEEECCCCcEEEecc
Q 012184 217 NWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 248 (469)
Q Consensus 217 ~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~ 248 (469)
.+|++|+. ..+++-.-.-..|+.+..
T Consensus 262 ~~~~~g~~------g~i~~S~DgG~tW~~~~~ 287 (327)
T 2xbg_A 262 EVWLAGGA------GALLCSQDGGQTWQQDVD 287 (327)
T ss_dssp CEEEEEST------TCEEEESSTTSSCEECGG
T ss_pred EEEEEeCC------CeEEEeCCCCcccEEcCc
Confidence 78887762 124333334578998763
No 247
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=91.96 E-value=0.97 Score=32.02 Aligned_cols=6 Identities=17% Similarity=0.501 Sum_probs=2.2
Q ss_pred hhhhhh
Q 012184 379 EKIDEV 384 (469)
Q Consensus 379 ~~~~~~ 384 (469)
.+++.+
T Consensus 13 ~KIq~a 18 (81)
T 2jee_A 13 AKVQQA 18 (81)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 248
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=91.95 E-value=2.7 Score=33.10 Aligned_cols=98 Identities=9% Similarity=0.121 Sum_probs=53.3
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh-----
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----- 427 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~----- 427 (469)
+.+|..+...|........+..+++-.+.+..-.+.++...-.+..-..+-..++....++..+.+.+.+|..+.
T Consensus 22 l~qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~ 101 (158)
T 3tul_A 22 LSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPG 101 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 555666655554333333222333322222222222223333333334555567788888888888888887777
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHh
Q 012184 428 --TIENEVQILRQQKSAFEQEMERA 450 (469)
Q Consensus 428 --~~e~e~~~~~q~~~~~~~~~~~~ 450 (469)
+++.++++++....+..+.++.+
T Consensus 102 Yak~~a~~~q~~~d~~~~~~~~~kA 126 (158)
T 3tul_A 102 YAQAEAAVEQAGKEATEAKEALDKA 126 (158)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777766666644
No 249
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=91.79 E-value=0.96 Score=43.70 Aligned_cols=11 Identities=18% Similarity=0.184 Sum_probs=4.6
Q ss_pred HHHHHHhHHHH
Q 012184 353 IDAIKEDKRVL 363 (469)
Q Consensus 353 ~~~l~~~~~~~ 363 (469)
|.+|+++..++
T Consensus 66 INELKnqLEdl 76 (562)
T 3ghg_A 66 INKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHTHH
T ss_pred HHHHHHHHHHH
Confidence 44444443333
No 250
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=91.74 E-value=0.72 Score=32.38 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 012184 393 KELSSVQGQLVAERSRCFKLEAQIAEL 419 (469)
Q Consensus 393 ~el~~~~~~l~~~~~~~~~~~~~~~e~ 419 (469)
+||..++..+...+.++.+.+...++|
T Consensus 31 EELs~vr~~ni~~eskL~eae~rn~eL 57 (81)
T 1wt6_A 31 REMEAIRTDNQNFASQLREAEARNRDL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443333
No 251
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=91.72 E-value=3.7 Score=34.98 Aligned_cols=155 Identities=12% Similarity=0.105 Sum_probs=79.0
Q ss_pred eeeEEECCEEEEEccccCCCCCcceEEEEECCC---CeEEEeecCC-CCCCCCcceEEEEECCEEEEEeccCCCCCccCc
Q 012184 56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLET---NLCGVMETSG-KVPVARGGHSVTLVGSRLIIFGGEDRSRKLLND 131 (469)
Q Consensus 56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t---~~W~~~~~~g-~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~ 131 (469)
-+++..++++|+|-|. .+|+++... +-=..+...- .+|. ....+....++++|+|-| +.
T Consensus 9 DA~~~~~g~~~fFkg~--------~~w~~~~~~~~~gyP~~I~~~w~glP~-~iDAa~~~~~g~~yfFkg--------~~ 71 (196)
T 3c7x_A 9 DTVAMLRGEMFVFKER--------WFWRVRNNQVMDGYPMPIGQFWRGLPA-SINTAYERKDGKFVFFKG--------DK 71 (196)
T ss_dssp SEEEEETTEEEEEETT--------EEEEEETTEECTTCSEEHHHHSTTCCS-SCCEEEECTTSCEEEEET--------TE
T ss_pred cEEEEcCCEEEEEECC--------EEEEEECCccCCCCceEhhHhccCCCC-CccEEEEeCCCcEEEecC--------CE
Confidence 3455779999999763 278875421 0001111110 1332 223222223678999865 34
Q ss_pred EEEEECCCCeE---EEeeeCC-CCCCCCCCceEEEE-cCcEEEEEecCCCCcccCcEEEEECCCCceEe--eeecCCC-C
Q 012184 132 VHFLDLETMTW---DAVEVTQ-TPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ--PEIKGDL-V 203 (469)
Q Consensus 132 v~~~d~~t~~W---~~~~~~g-~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~--~~~~~~~-p 203 (469)
+|+|+..+... +.+...+ .+|.... -++... .++++|+|-| +..|+||..+.+-.. +...... .
T Consensus 72 yw~~~~~~~~~gyPk~I~~~~~glP~~~I-DAA~~~~~~g~~yfFkG-------~~yw~yd~~~~~v~~gyPk~i~~~~g 143 (196)
T 3c7x_A 72 HWVFDEASLEPGYPKHIKELGRGLPTDKI-DAALFWMPNGKTYFFRG-------NKYYRFNEELRAVDSEYPKNIKVWEG 143 (196)
T ss_dssp EEEEETTEECTTCSEEGGGTCBSCCSSCC-SEEEEETTTTEEEEEET-------TEEEEEETTTTEECTTCSEEGGGSBT
T ss_pred EEEEeCCcccCCCCeEhhhcCCCCCCCcc-cEEEEEccCCEEEEEEC-------CEEEEEeCCcccccCCCCccHHHCCC
Confidence 78887432110 1121111 1332222 233333 3689999987 568999987654322 1111111 1
Q ss_pred CCCcceEEEEE-CC-EEEEEecCCCCCCcceEEEEECCCCc
Q 012184 204 TGRAGHAGITI-DE-NWYIVGGGDNNNGCQETIVLNMTKLA 242 (469)
Q Consensus 204 ~~r~~~~~~~~-~~-~l~v~GG~~~~~~~~d~~~~d~~~~~ 242 (469)
.|..-.++... ++ ++|+|=| +..|+||..+..
T Consensus 144 ip~~idaAf~~~~~~~~YfFkg-------~~y~r~d~~~~~ 177 (196)
T 3c7x_A 144 IPESPRGSFMGSDEVFTYFYKG-------NKYWKFNNQKLK 177 (196)
T ss_dssp CCSSCSEEEECTTSSEEEEEET-------TEEEEEETTTTE
T ss_pred cCCCcceeEEecCCCEEEEEEC-------CEEEEEECCcce
Confidence 12223344444 44 8999977 378999987754
No 252
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=91.49 E-value=14 Score=38.02 Aligned_cols=113 Identities=16% Similarity=0.112 Sum_probs=61.4
Q ss_pred ceEEEEccCCc--eeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe--E
Q 012184 16 VVMVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--C 91 (469)
Q Consensus 16 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W 91 (469)
.++.+|..+++ |+.-...... ... .........+.++.++.||+... ...++.+|..|++ |
T Consensus 77 ~v~AlD~~tG~~~W~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~v~v~~~-------dg~l~alD~~tG~~~W 141 (668)
T 1kv9_A 77 RVIAVDAASGKELWRYDPEVAKV-----KAR---TSCCDAVNRGVALWGDKVYVGTL-------DGRLIALDAKTGKAIW 141 (668)
T ss_dssp EEEEEETTTCCEEEEECCCCCGG-----GGG---GCTTCSCCCCCEEEBTEEEEECT-------TSEEEEEETTTCCEEE
T ss_pred eEEEEECCCChhceEECCCCCcc-----ccc---cccccCCccceEEECCEEEEEcC-------CCEEEEEECCCCCEee
Confidence 68999988764 8765432110 000 00001112334567888887642 1349999999886 8
Q ss_pred EEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe--EEEe
Q 012184 92 GVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAV 145 (469)
Q Consensus 92 ~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~--W~~~ 145 (469)
+.-... .........+.++.++.+|+-.+ .........++.||+.|++ |+.-
T Consensus 142 ~~~~~~-~~~~~~~~~~P~v~~~~v~vg~~-~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 142 SQQTTD-PAKPYSITGAPRVVKGKVIIGNG-GAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp EEECSC-TTSSCBCCSCCEEETTEEEECCB-CTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred eeccCC-CCCcceecCCCEEECCEEEEeCC-CCCcCCCCEEEEEECCCCcEEEEec
Confidence 765421 11111222233456787776322 2111134579999998875 8764
No 253
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=91.48 E-value=8.5 Score=35.46 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=14.0
Q ss_pred cCcEEEEEecCCCCcccCcEEEEECC
Q 012184 164 ANRYLIVFGGCSHSIFFNDLHVLDLQ 189 (469)
Q Consensus 164 ~~~~l~v~GG~~~~~~~~~i~~~d~~ 189 (469)
.++..++.|+.+ ..+.+||+.
T Consensus 223 ~~g~~l~sgs~d-----g~v~iwd~~ 243 (343)
T 2xzm_R 223 PNGKYIATGGKD-----KKLLIWDIL 243 (343)
T ss_dssp TTSSEEEEEETT-----CEEEEEESS
T ss_pred CCCCEEEEEcCC-----CeEEEEECC
Confidence 356677777754 357888874
No 254
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=91.39 E-value=2 Score=32.51 Aligned_cols=12 Identities=25% Similarity=0.360 Sum_probs=4.7
Q ss_pred cchhhHHHHHHH
Q 012184 386 STHSELSKELSS 397 (469)
Q Consensus 386 ~~~~e~~~el~~ 397 (469)
+...+++.++.+
T Consensus 29 ~~k~eL~~~~~~ 40 (107)
T 2no2_A 29 REKKELEDSLER 40 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333334444443
No 255
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=91.39 E-value=1.3 Score=33.16 Aligned_cols=59 Identities=24% Similarity=0.343 Sum_probs=32.6
Q ss_pred chhhHHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 012184 387 THSELSKELSSVQGQLVAERSRCFKLEAQIA----ELQKMLESSQTIENEVQILRQQKSAFEQEM 447 (469)
Q Consensus 387 ~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~----e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~ 447 (469)
.++++++++...+.||...++++.+.+++.+ |+. ++..++++.++..++.++.++.+++
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevN--K~tl~~R~~~Vs~lq~KiaeLKrqL 85 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELN--KRTLTDREGVAVSIQAKIDELKRQL 85 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777777777666554 222 2233333444444444444444444
No 256
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=91.30 E-value=12 Score=37.02 Aligned_cols=135 Identities=11% Similarity=0.071 Sum_probs=64.6
Q ss_pred CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc
Q 012184 113 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE 192 (469)
Q Consensus 113 ~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~ 192 (469)
++.+++.|+.+ ..+.+||.....-..+.. ....-.+++...++.+++.|+.+ ..+.++|.....
T Consensus 437 d~~~l~~~~~d------~~v~~w~~~~~~~~~~~~-----~~~~v~~~~~spd~~~las~~~d-----~~i~iw~~~~~~ 500 (577)
T 2ymu_A 437 DDQTIASASDD------KTVKLWNRNGQLLQTLTG-----HSSSVRGVAFSPDGQTIASASDD-----KTVKLWNRNGQL 500 (577)
T ss_dssp TSSEEEEEETT------SEEEEEETTSCEEEEEEC-----CSSCEEEEEECTTSCEEEEEETT-----SEEEEEETTSCE
T ss_pred CCCEEEEEcCC------CEEEEEECCCCEEEEEcC-----CCCCEEEEEEcCCCCEEEEEeCC-----CEEEEEcCCCCE
Confidence 45566666543 247888876655444431 11111233333466677777654 347788864433
Q ss_pred eEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCc
Q 012184 193 WSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEH 271 (469)
Q Consensus 193 W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~ 271 (469)
-..+. + .... -.+++.. ++++++.|+.+ ..+.+||........+. +.. -.+..+...+++
T Consensus 501 ~~~~~--~--h~~~-v~~l~~s~dg~~l~s~~~d-----g~v~lwd~~~~~~~~~~---~h~------~~v~~~~fs~dg 561 (577)
T 2ymu_A 501 LQTLT--G--HSSS-VRGVAFSPDGQTIASASDD-----KTVKLWNRNGQLLQTLT---GHS------SSVWGVAFSPDG 561 (577)
T ss_dssp EEEEE--C--CSSC-EEEEEECTTSSCEEEEETT-----SEEEEECTTSCEEEEEE---CCS------SCEEEEEECTTS
T ss_pred EEEEe--C--CCCC-EEEEEEcCCCCEEEEEECc-----CEEEEEeCCCCEEEEEc---CCC------CCEEEEEEcCCC
Confidence 22221 1 1111 1122222 45666776643 24777886554333322 111 112233344555
Q ss_pred EEEEEeccCCC
Q 012184 272 HLVAFGGYNGK 282 (469)
Q Consensus 272 ~l~v~GG~~~~ 282 (469)
.+++.||.++.
T Consensus 562 ~~l~s~~~D~~ 572 (577)
T 2ymu_A 562 QTIASASSDKT 572 (577)
T ss_dssp SCEEEEETTSC
T ss_pred CEEEEEeCCCE
Confidence 66677776653
No 257
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=91.22 E-value=13 Score=37.09 Aligned_cols=144 Identities=13% Similarity=0.123 Sum_probs=72.1
Q ss_pred CEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCc-eEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc
Q 012184 114 SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH-SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE 192 (469)
Q Consensus 114 ~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~-~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~ 192 (469)
+.+++.|+.. ...+.+||+.+..... . ........- ++....++.+++.|+.+ ..+.+||+.+..
T Consensus 456 ~~~l~~~~~~-----d~~i~~~~~~~~~~~~-~---~~~~~~~~v~~~~~s~~g~~l~~~~~d-----g~i~iw~~~~~~ 521 (615)
T 1pgu_A 456 QNYVAVGLEE-----GNTIQVFKLSDLEVSF-D---LKTPLRAKPSYISISPSETYIAAGDVM-----GKILLYDLQSRE 521 (615)
T ss_dssp SSEEEEEETT-----TSCEEEEETTEEEEEE-E---CSSCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTE
T ss_pred CCEEEEeecC-----CCeEEEEECCCccccc-c---ccCCccCceEEEEECCCCCEEEEcCCC-----CeEEEeeCCCCc
Confidence 5566666541 2248999998876543 2 111112222 23333356677777654 458899988765
Q ss_pred eEeeeecCCCCCCCcceEEEEE-----------CCEEEEEecCCCCCCcceEEEEECCCCc--EEEeccCCCCCCCCCCC
Q 012184 193 WSQPEIKGDLVTGRAGHAGITI-----------DENWYIVGGGDNNNGCQETIVLNMTKLA--WSILTSVKGRNPLASEG 259 (469)
Q Consensus 193 W~~~~~~~~~p~~r~~~~~~~~-----------~~~l~v~GG~~~~~~~~d~~~~d~~~~~--W~~~~~~~~~~p~~r~~ 259 (469)
-.... .......-.+++.. ++.+++.|+.++ .+.+||+.+.. ...+ ....
T Consensus 522 ~~~~~---~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~---~~h~------ 584 (615)
T 1pgu_A 522 VKTSR---WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT-----NIFIYSVKRPMKIIKAL---NAHK------ 584 (615)
T ss_dssp EEECC---SCCCSSCEEEEEECCCC------CCSCCEEEEEETTS-----CEEEEESSCTTCCEEET---TSST------
T ss_pred ceeEe---ecCCCCceeEEEEcCccccccccccCCCEEEEEcCCC-----cEEEEECCCCceechhh---hcCc------
Confidence 43311 10011111122222 456777776432 58889987752 2222 1111
Q ss_pred cceEEEEEcCCcEEEEEeccCCCCCceEEEEECC
Q 012184 260 LSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK 293 (469)
Q Consensus 260 ~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~ 293 (469)
..+..+...+++. ++.||.++. +.+|+++
T Consensus 585 ~~v~~l~~s~~~~-l~s~~~d~~----v~iw~~~ 613 (615)
T 1pgu_A 585 DGVNNLLWETPST-LVSSGADAC----IKRWNVV 613 (615)
T ss_dssp TCEEEEEEEETTE-EEEEETTSC----EEEEEEC
T ss_pred cceEEEEEcCCCC-eEEecCCce----EEEEeee
Confidence 1222223333456 777776653 6666654
No 258
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=91.21 E-value=8.4 Score=34.93 Aligned_cols=187 Identities=13% Similarity=0.079 Sum_probs=89.3
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT 141 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~ 141 (469)
++.+++.|+.+. .+..++........... ............-.+.+++.|+.+. .+.++|+....
T Consensus 97 dg~~l~s~~~d~------~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~s~d~------~~~~~d~~~~~ 161 (340)
T 4aow_A 97 DGQFALSGSWDG------TLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQIVSGSRDK------TIKLWNTLGVC 161 (340)
T ss_dssp TSSEEEEEETTS------EEEEEETTTTEEEEEEE---CCSSCEEEEEECTTSSCEEEEETTS------CEEEECTTSCE
T ss_pred CCCEEEEEcccc------cceEEeecccceeeeec---CCCCceeEEEEeecCccceeecCCC------eEEEEEeCCCc
Confidence 556666766442 37788888777655542 1222122222222345556665432 36777776554
Q ss_pred EEEeeeCCCCCCCCCCceEEEE---cCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCE
Q 012184 142 WDAVEVTQTPPAPRYDHSAALH---ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DEN 217 (469)
Q Consensus 142 W~~~~~~g~~p~~r~~~~~~~~---~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~ 217 (469)
-......+ .......+.+ ....+++.|+.+ ..+.+||+.+....... .+ .. ..-.+++.. ++.
T Consensus 162 ~~~~~~~~----~~~~v~~~~~~~~~~~~~~~s~~~d-----~~i~i~d~~~~~~~~~~-~~--h~-~~v~~~~~s~~~~ 228 (340)
T 4aow_A 162 KYTVQDES----HSEWVSCVRFSPNSSNPIIVSCGWD-----KLVKVWNLANCKLKTNH-IG--HT-GYLNTVTVSPDGS 228 (340)
T ss_dssp EEEECSSS----CSSCEEEEEECSCSSSCEEEEEETT-----SCEEEEETTTTEEEEEE-CC--CS-SCEEEEEECTTSS
T ss_pred eEEEEecc----ccCcccceEEccCCCCcEEEEEcCC-----CEEEEEECCCCceeeEe-cC--CC-CcEEEEEECCCCC
Confidence 33332111 1111122222 123456666544 35788998877654322 11 11 111222222 456
Q ss_pred EEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184 218 WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 218 l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~ 295 (469)
+++.|+.+ ..+.+||+.+..-... +... ..+..+...++..++ .|+.++ .+.+||+...
T Consensus 229 ~l~s~s~D-----g~i~iwd~~~~~~~~~--~~~~-------~~v~~~~~~~~~~~~-~~~~d~----~i~iwd~~~~ 287 (340)
T 4aow_A 229 LCASGGKD-----GQAMLWDLNEGKHLYT--LDGG-------DIINALCFSPNRYWL-CAATGP----SIKIWDLEGK 287 (340)
T ss_dssp EEEEEETT-----CEEEEEETTTTEEEEE--EECS-------SCEEEEEECSSSSEE-EEEETT----EEEEEETTTT
T ss_pred EEEEEeCC-----CeEEEEEeccCceeee--ecCC-------ceEEeeecCCCCcee-eccCCC----EEEEEECCCC
Confidence 77777753 2577888877553322 1111 112233334444444 455443 4777887654
No 259
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=91.17 E-value=15 Score=37.92 Aligned_cols=168 Identities=15% Similarity=0.088 Sum_probs=84.9
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCE-EEEEeccCCC-------CCccCcEE
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSR-LIIFGGEDRS-------RKLLNDVH 133 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-lyi~GG~~~~-------~~~~~~v~ 133 (469)
+++.++|+-.. .+.....++++|+.++....... +..+....+-. +++ ||+.. .... ......|+
T Consensus 139 Dg~~lAy~~~~-~G~~~~~i~v~dl~tg~~~~~~~----~~~k~~~~~Ws-Dg~~l~y~~-~~~~~~~~~~~~~~~~~v~ 211 (693)
T 3iuj_A 139 DGRILAYSLSL-AGSDWREIHLMDVESKQPLETPL----KDVKFSGISWL-GNEGFFYSS-YDKPDGSELSARTDQHKVY 211 (693)
T ss_dssp TSSEEEEEEEC-SSCCEEEEEEEETTTCSEEEEEE----EEEESCCCEEE-TTTEEEEEE-SSCCC-------CCCCEEE
T ss_pred CCCEEEEEEec-CCCceEEEEEEECCCCCCCcccc----CCceeccEEEe-CCCEEEEEE-ecCcccccccccCCCcEEE
Confidence 55555553222 22223569999999998765432 11222222223 554 55443 2211 12355689
Q ss_pred EEECCCCeE--EEeeeCCCCCC--CCCCceEEEEcCc-EEEEEecCCCCcccCcEEEEECCCC--ceEeeeecCCCCCCC
Q 012184 134 FLDLETMTW--DAVEVTQTPPA--PRYDHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTN--EWSQPEIKGDLVTGR 206 (469)
Q Consensus 134 ~~d~~t~~W--~~~~~~g~~p~--~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~i~~~d~~~~--~W~~~~~~~~~p~~r 206 (469)
++++.+..= ..+. ..+. +.....+..-.|+ +|++....+. ..+++|++|+.+. .|..+.. +...
T Consensus 212 ~~~lgt~~~~~~~v~---~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~--~~~~i~~~d~~~~~~~~~~l~~----~~~~ 282 (693)
T 3iuj_A 212 FHRLGTAQEDDRLVF---GAIPAQHHRYVGATVTEDDRFLLISAANST--SGNRLYVKDLSQENAPLLTVQG----DLDA 282 (693)
T ss_dssp EEETTSCGGGCEEEE---SCSGGGCCSEEEEEECTTSCEEEEEEESSS--SCCEEEEEETTSTTCCCEEEEC----SSSS
T ss_pred EEECCCCcccceEEE---ecCCCCCeEEEEEEEcCCCCEEEEEEccCC--CCcEEEEEECCCCCCceEEEeC----CCCc
Confidence 998877642 1221 1111 2222223332344 4444333222 2378999998766 6777641 1111
Q ss_pred cceEEEEECCEEEEEecCCCCCCcceEEEEECCC---CcEEEec
Q 012184 207 AGHAGITIDENWYIVGGGDNNNGCQETIVLNMTK---LAWSILT 247 (469)
Q Consensus 207 ~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~---~~W~~~~ 247 (469)
........++.+|++...+ .....++.+|+.+ ..|+.+.
T Consensus 283 ~~~~~~~~g~~l~~~t~~~--~~~~~l~~~d~~~~~~~~~~~l~ 324 (693)
T 3iuj_A 283 DVSLVDNKGSTLYLLTNRD--APNRRLVTVDAANPGPAHWRDLI 324 (693)
T ss_dssp CEEEEEEETTEEEEEECTT--CTTCEEEEEETTSCCGGGCEEEE
T ss_pred eEEEEeccCCEEEEEECCC--CCCCEEEEEeCCCCCccccEEEe
Confidence 1112334578888886532 2245799999876 3487654
No 260
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=91.10 E-value=9.2 Score=35.14 Aligned_cols=135 Identities=11% Similarity=-0.048 Sum_probs=68.9
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME 95 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~ 95 (469)
.+++||+.++....+.. + ......+..-++.+|+... +.+++||+.++....+.
T Consensus 72 ~i~~~d~~~~~~~~~~~-----------------~-~~v~~i~~~~dg~l~v~~~--------~gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 72 ELHELHLASGRKTVHAL-----------------P-FMGSALAKISDSKQLIASD--------DGLFLRDTATGVLTLHA 125 (326)
T ss_dssp EEEEEETTTTEEEEEEC-----------------S-SCEEEEEEEETTEEEEEET--------TEEEEEETTTCCEEEEE
T ss_pred EEEEEECCCCcEEEEEC-----------------C-CcceEEEEeCCCeEEEEEC--------CCEEEEECCCCcEEEEe
Confidence 67888888776554432 1 1111112234778777531 23999999999988775
Q ss_pred cCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCc-EEEEEe
Q 012184 96 TSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANR-YLIVFG 172 (469)
Q Consensus 96 ~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-~l~v~G 172 (469)
.... ..+........+ ++++|+-............+++|+ +.+...+..... ....++...++ .+|+..
T Consensus 126 ~~~~-~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~-----~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 126 ELES-DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADIS-----IPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp CSST-TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEES-----SEEEEEECTTSCEEEEEE
T ss_pred eCCC-CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCc-----ccCCeEEcCCCCEEEEEE
Confidence 3211 111111222223 466765321111111345799999 566655432101 11223333244 577764
Q ss_pred cCCCCcccCcEEEEECC
Q 012184 173 GCSHSIFFNDLHVLDLQ 189 (469)
Q Consensus 173 G~~~~~~~~~i~~~d~~ 189 (469)
.. .+.|++||+.
T Consensus 198 ~~-----~~~I~~~d~~ 209 (326)
T 2ghs_A 198 TK-----VNRLMRVPLD 209 (326)
T ss_dssp TT-----TCEEEEEEBC
T ss_pred CC-----CCEEEEEEcc
Confidence 32 2579999975
No 261
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=90.97 E-value=9.5 Score=35.05 Aligned_cols=147 Identities=9% Similarity=-0.011 Sum_probs=77.0
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT 141 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~ 141 (469)
++.+|+++... ..+++||+.++....+.. +. .....+..-++++|+.. .+.+++||+.+++
T Consensus 60 ~~~l~~~d~~~------~~i~~~d~~~~~~~~~~~----~~-~v~~i~~~~dg~l~v~~--------~~gl~~~d~~~g~ 120 (326)
T 2ghs_A 60 SGTAWWFNILE------RELHELHLASGRKTVHAL----PF-MGSALAKISDSKQLIAS--------DDGLFLRDTATGV 120 (326)
T ss_dssp TTEEEEEEGGG------TEEEEEETTTTEEEEEEC----SS-CEEEEEEEETTEEEEEE--------TTEEEEEETTTCC
T ss_pred CCEEEEEECCC------CEEEEEECCCCcEEEEEC----CC-cceEEEEeCCCeEEEEE--------CCCEEEEECCCCc
Confidence 46788876432 249999999987766542 21 11222223367777753 1249999999998
Q ss_pred EEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCC-CCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CC-EE
Q 012184 142 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS-HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DE-NW 218 (469)
Q Consensus 142 W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~-~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~-~l 218 (469)
...+...........-..++...++.+|+..... .......+++|+ +.+...+... . .....++.. ++ .+
T Consensus 121 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~----~-~~~~~i~~s~dg~~l 193 (326)
T 2ghs_A 121 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD----I-SIPNSICFSPDGTTG 193 (326)
T ss_dssp EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE----E-SSEEEEEECTTSCEE
T ss_pred EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC----C-cccCCeEEcCCCCEE
Confidence 8766422110111111233333466677633111 112235789998 4665544211 0 111233333 33 56
Q ss_pred EEEecCCCCCCcceEEEEECC
Q 012184 219 YIVGGGDNNNGCQETIVLNMT 239 (469)
Q Consensus 219 ~v~GG~~~~~~~~d~~~~d~~ 239 (469)
|+.... .+.+++||+.
T Consensus 194 yv~~~~-----~~~I~~~d~~ 209 (326)
T 2ghs_A 194 YFVDTK-----VNRLMRVPLD 209 (326)
T ss_dssp EEEETT-----TCEEEEEEBC
T ss_pred EEEECC-----CCEEEEEEcc
Confidence 776432 2478999975
No 262
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=90.95 E-value=15 Score=37.79 Aligned_cols=77 Identities=10% Similarity=-0.065 Sum_probs=38.6
Q ss_pred CCEEEEEccccCCC---CCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECC
Q 012184 62 GTKLLILGGHYKKS---SDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE 138 (469)
Q Consensus 62 ~~~iy~~GG~~~~~---~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~ 138 (469)
+++.++++...... .....++.+|+.++.-..+.... .........+..=+++.++++.. +.++++|+.
T Consensus 71 Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~~~~SPdG~~la~~~~-------~~i~~~~~~ 142 (723)
T 1xfd_A 71 DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPE-VSNAKLQYAGWGPKGQQLIFIFE-------NNIYYCAHV 142 (723)
T ss_dssp TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTT-CCSCCCSBCCBCSSTTCEEEEET-------TEEEEESSS
T ss_pred CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCc-cccccccccEECCCCCEEEEEEC-------CeEEEEECC
Confidence 55545554432221 13367999999988765554211 11111111111113443444332 368888888
Q ss_pred CCeEEEee
Q 012184 139 TMTWDAVE 146 (469)
Q Consensus 139 t~~W~~~~ 146 (469)
++....+.
T Consensus 143 ~g~~~~~~ 150 (723)
T 1xfd_A 143 GKQAIRVV 150 (723)
T ss_dssp SSCCEEEE
T ss_pred CCceEEEe
Confidence 87766654
No 263
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=90.88 E-value=3.2 Score=29.47 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=14.8
Q ss_pred HHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHH
Q 012184 362 VLELSLTEVRTENSRFREKIDEVNSTHSELSKELSS 397 (469)
Q Consensus 362 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~ 397 (469)
.++..+.......+++-++.++++..+..++.+-.+
T Consensus 8 ~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~ 43 (101)
T 1d7m_A 8 GLENSLESEKVSREQLIKQKDQLNSLLASLESEGAE 43 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444434444444444444444444333333
No 264
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=90.86 E-value=12 Score=36.11 Aligned_cols=106 Identities=17% Similarity=0.093 Sum_probs=54.5
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccC---CCCCcceEEEEECCCCeEE
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYK---KSSDSMIVRFIDLETNLCG 92 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~---~~~~~~~~~~~d~~t~~W~ 92 (469)
.+.++|+.+++=...-+.+ ..+ +.++...+..+|+.--... .+...+.+.++|+.+++-.
T Consensus 100 ~VsVID~~t~~vv~~I~vG---------------~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv 162 (426)
T 3c75_H 100 QQFVIDGSTGRILGMTDGG---------------FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPI 162 (426)
T ss_dssp EEEEEETTTTEEEEEEEEC---------------SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE
T ss_pred eEEEEECCCCEEEEEEECC---------------CCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEE
Confidence 8899999887654333332 112 2222222566777742100 0112356999999998754
Q ss_pred E-eecCCCCC--CCCcceEEEE--ECCEEEEEeccCCCCCccCcEEEEECCCCeEE
Q 012184 93 V-METSGKVP--VARGGHSVTL--VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWD 143 (469)
Q Consensus 93 ~-~~~~g~~p--~~r~~~~~~~--~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~ 143 (469)
. +...+... ....-+.++. -+.++|+..- . ..+.+.++|+.+++-.
T Consensus 163 ~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~-~----~~~~VsVID~~t~kvv 213 (426)
T 3c75_H 163 ADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQF-S----PAPAVGVVDLEGKTFD 213 (426)
T ss_dssp EEEEETTCCCCCBSCCGGGSEECTTSSEEEEEEC-S----SSCEEEEEETTTTEEE
T ss_pred EEEECCCccccccCCCcceEEEcCCCCEEEEEec-C----CCCeEEEEECCCCeEE
Confidence 3 33211000 0011122222 2446887631 1 2467999999998754
No 265
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=90.77 E-value=9.5 Score=34.75 Aligned_cols=195 Identities=11% Similarity=0.003 Sum_probs=95.3
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 94 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~ 94 (469)
.+++||+.+++...+... + ...-++++.. ++++|+....... ....+++||+.+.....+
T Consensus 67 ~i~~~d~~~~~~~~~~~~----------------~-~~~~~~i~~~~dg~l~v~~~~~~~--~~~~i~~~d~~~~~~~~~ 127 (333)
T 2dg1_A 67 NIFKINPETKEIKRPFVS----------------H-KANPAAIKIHKDGRLFVCYLGDFK--STGGIFAATENGDNLQDI 127 (333)
T ss_dssp EEEEECTTTCCEEEEEEC----------------S-SSSEEEEEECTTSCEEEEECTTSS--SCCEEEEECTTSCSCEEE
T ss_pred EEEEEeCCCCcEEEEeeC----------------C-CCCcceEEECCCCcEEEEeCCCCC--CCceEEEEeCCCCEEEEE
Confidence 688888888887765432 1 1112333332 5677776532211 124599999998876644
Q ss_pred ecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCc-EEEEEe
Q 012184 95 ETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANR-YLIVFG 172 (469)
Q Consensus 95 ~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-~l~v~G 172 (469)
... .+....-..++.- ++.+|+.............+++||+.+.+...+... .. ....++...++ .||+..
T Consensus 128 ~~~--~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~---~~~~i~~~~dg~~l~v~~ 200 (333)
T 2dg1_A 128 IED--LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--IS---VANGIALSTDEKVLWVTE 200 (333)
T ss_dssp ECS--SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ES---SEEEEEECTTSSEEEEEE
T ss_pred Ecc--CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--CC---cccceEECCCCCEEEEEe
Confidence 321 1111111222222 467777543221111245699999888776655321 11 11233333343 577764
Q ss_pred cCCCCcccCcEEEEECCCC--ceEeeee--cCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEe
Q 012184 173 GCSHSIFFNDLHVLDLQTN--EWSQPEI--KGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSIL 246 (469)
Q Consensus 173 G~~~~~~~~~i~~~d~~~~--~W~~~~~--~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~ 246 (469)
.. .+.+++||+.+. ....+.. ....+.......++.. ++.+|+.... .+.+.+||+....-..+
T Consensus 201 ~~-----~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~-----~~~v~~~d~~g~~~~~~ 269 (333)
T 2dg1_A 201 TT-----ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG-----QGRVLVFNKRGYPIGQI 269 (333)
T ss_dssp GG-----GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET-----TTEEEEECTTSCEEEEE
T ss_pred CC-----CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC-----CCEEEEECCCCCEEEEE
Confidence 32 256899998542 2322110 0001111111223332 4667776431 13688999865443333
No 266
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=90.76 E-value=5.7 Score=32.18 Aligned_cols=67 Identities=15% Similarity=0.250 Sum_probs=36.7
Q ss_pred HHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 012184 361 RVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 427 (469)
Q Consensus 361 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~ 427 (469)
..++..+.........|...-..........+.++..+..++.....|....++.++.|++.+...+
T Consensus 45 ~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lE 111 (155)
T 2efr_A 45 AELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLE 111 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444334444444555566666666666666666666666666666655444
No 267
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=90.51 E-value=10 Score=34.80 Aligned_cols=108 Identities=14% Similarity=0.164 Sum_probs=57.8
Q ss_pred CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc
Q 012184 113 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE 192 (469)
Q Consensus 113 ~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~ 192 (469)
++.+++.|+.+. .+.+||+.+..-..... ........++....++.+++.|+.+ ..|.+||+.+..
T Consensus 138 ~~~~l~s~s~dg------~i~~wd~~~~~~~~~~~---~~~~~~i~~~~~~pdg~~lasg~~d-----g~i~iwd~~~~~ 203 (343)
T 3lrv_A 138 NTEYFIWADNRG------TIGFQSYEDDSQYIVHS---AKSDVEYSSGVLHKDSLLLALYSPD-----GILDVYNLSSPD 203 (343)
T ss_dssp -CCEEEEEETTC------CEEEEESSSSCEEEEEC---CCSSCCCCEEEECTTSCEEEEECTT-----SCEEEEESSCTT
T ss_pred CCCEEEEEeCCC------cEEEEECCCCcEEEEEe---cCCCCceEEEEECCCCCEEEEEcCC-----CEEEEEECCCCC
Confidence 345666676443 48899998887644331 1112123344444467777777755 468999998776
Q ss_pred eEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCc
Q 012184 193 WSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLA 242 (469)
Q Consensus 193 W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~ 242 (469)
-......+ .....-.+++.. ++..++.|+ ++ .+.+||+.+..
T Consensus 204 ~~~~~~~~--~h~~~v~~l~fs~~g~~l~s~~-~~-----~v~iwd~~~~~ 246 (343)
T 3lrv_A 204 QASSRFPV--DEEAKIKEVKFADNGYWMVVEC-DQ-----TVVCFDLRKDV 246 (343)
T ss_dssp SCCEECCC--CTTSCEEEEEECTTSSEEEEEE-SS-----BEEEEETTSST
T ss_pred CCccEEec--cCCCCEEEEEEeCCCCEEEEEe-CC-----eEEEEEcCCCC
Confidence 43111011 011111122222 455666666 22 68889987653
No 268
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=90.50 E-value=1.7 Score=32.19 Aligned_cols=56 Identities=14% Similarity=0.231 Sum_probs=34.5
Q ss_pred hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Q 012184 373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQT 428 (469)
Q Consensus 373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~ 428 (469)
++.-|+-.+++.++...++.++..+...++..++..+..++.++.+++.++.+..+
T Consensus 31 qVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~ 86 (103)
T 4h22_A 31 QVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREE 86 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666666666666666666666666666666666555543
No 269
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=90.45 E-value=8.2 Score=37.60 Aligned_cols=157 Identities=10% Similarity=0.047 Sum_probs=82.7
Q ss_pred eeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCC---CCCCCcceEEEEE--CCEEEEEeccCCCCCccC
Q 012184 56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGK---VPVARGGHSVTLV--GSRLIIFGGEDRSRKLLN 130 (469)
Q Consensus 56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~---~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~ 130 (469)
-+++..++++|+|-|.. +|+++.....+........ +|. ... ++... ++++|+|=|.
T Consensus 266 DAi~~~~ge~y~Fkg~~--------~wr~~~~~~~~~p~~I~~~Wp~LP~-~iD-Aa~~~~~~g~~~fFKg~-------- 327 (450)
T 1su3_A 266 DAITTIRGEVMFFKDRF--------YMRTNPFYPEVELNFISVFWPQLPN-GLE-AAYEFADRDEVRFFKGN-------- 327 (450)
T ss_dssp SEEEEETTEEEEEETTE--------EEECCTTSSSCEEEEGGGTCTTSCS-SCC-EEEEEGGGTEEEEEETT--------
T ss_pred ceEEecCCeEEEEeCCE--------EEEEcCCCCcccceehhHhccCCCC-Cee-EEEEEcCCCeEEEEeCC--------
Confidence 35667899999997632 7777765544433322211 222 122 22222 6899999553
Q ss_pred cEEEEECCCCe--E-EEee-eCCCCCC-CCCCceEEEE-cCcEEEEEecCCCCcccCcEEEEECCCCceEe--eeecC-C
Q 012184 131 DVHFLDLETMT--W-DAVE-VTQTPPA-PRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ--PEIKG-D 201 (469)
Q Consensus 131 ~v~~~d~~t~~--W-~~~~-~~g~~p~-~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~--~~~~~-~ 201 (469)
.+|+|+..+.. + ..+. ..| .|. +..--++... .++++|+|-| +..|+||..+.+-.. +.... .
T Consensus 328 ~~W~~~~~~~~~gyP~~i~~~~g-~P~~~~~IDAA~~~~~~~k~yfFkG-------~~yw~yd~~~~~~~~gYPk~I~~~ 399 (450)
T 1su3_A 328 KYWAVQGQNVLHGYPKDIYSSFG-FPRTVKHIDAALSEENTGKTYFFVA-------NKYWRYDEYKRSMDPGYPKMIAHD 399 (450)
T ss_dssp EEEEEETTEECTTCSEEHHHHHC-CCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCSEEHHHH
T ss_pred EEEEecCCcccCCCceeeehhhc-CCCCCCccceEEEEcCCCeEEEEeC-------CEEEEEeCCCccccCCCCcchhhc
Confidence 36777632100 0 1111 011 222 1112233333 3689999987 679999976544321 11000 0
Q ss_pred C-CCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEE
Q 012184 202 L-VTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSI 245 (469)
Q Consensus 202 ~-p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~ 245 (469)
. ..+..-.++...++++|+|-| +..|+||..+..-..
T Consensus 400 fpgip~~iDAA~~~~g~~YFFkg-------~~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 400 FPGIGHKVDAVFMKDGFFYFFHG-------TRQYKFDPKTKRILT 437 (450)
T ss_dssp STTSCSCCSEEEEETTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred CCCCCCCccEEEEcCCeEEEEeC-------CEEEEEECCcceEec
Confidence 1 112222355556899999977 378999988776543
No 270
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=90.28 E-value=2.3 Score=29.76 Aligned_cols=60 Identities=18% Similarity=0.284 Sum_probs=36.7
Q ss_pred cchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 012184 386 STHSELSKELSSVQGQLVAERSRCFKLEAQIA----ELQKMLESSQTIENEVQILRQQKSAFEQEM 447 (469)
Q Consensus 386 ~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~----e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~ 447 (469)
..++++++++...+.||...++++.+.+++.+ |+. .+..++...++..++.++.++.+++
T Consensus 5 ~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevN--K~~~~~R~~~V~~lq~Ki~elkrql 68 (78)
T 2ic6_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVN--KSTLQSRRAAVSALETKLGELKREL 68 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788888888888888888777776654 222 2333344445555555555555554
No 271
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=90.20 E-value=4 Score=29.76 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 012184 429 IENEVQILRQQKSAFEQEMERATS 452 (469)
Q Consensus 429 ~e~e~~~~~q~~~~~~~~~~~~~~ 452 (469)
.+...+.+..++..++..+.++++
T Consensus 61 aEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 61 LEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445544444433
No 272
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=89.91 E-value=1.8 Score=30.40 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=9.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhh
Q 012184 405 ERSRCFKLEAQIAELQKMLESSQT 428 (469)
Q Consensus 405 ~~~~~~~~~~~~~e~~~~l~~~~~ 428 (469)
++..+.+++++..++++.+.....
T Consensus 44 L~~mi~~l~~E~~~l~~ni~~lk~ 67 (78)
T 3iv1_A 44 LEEMVTRLDQEVAEVDKNIELLKK 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333333
No 273
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=89.65 E-value=26 Score=38.08 Aligned_cols=75 Identities=23% Similarity=0.211 Sum_probs=40.8
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCC----CCCccCcEEEEEC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDR----SRKLLNDVHFLDL 137 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~----~~~~~~~v~~~d~ 137 (469)
+++.+++++.. ..++.+|+.++.-..+... ........+..-+++.+++++... .....+.++++|+
T Consensus 389 DG~~la~~~~~------~~v~~~d~~tg~~~~~~~~---~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~ 459 (1045)
T 1k32_A 389 NGKFAVVANDR------FEIMTVDLETGKPTVIERS---REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM 459 (1045)
T ss_dssp TSSEEEEEETT------SEEEEEETTTCCEEEEEEC---SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred CCCEEEEECCC------CeEEEEECCCCceEEeccC---CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEEC
Confidence 55555555432 2599999999987766521 111111111222455555554422 1112457999999
Q ss_pred CCCeEEEe
Q 012184 138 ETMTWDAV 145 (469)
Q Consensus 138 ~t~~W~~~ 145 (469)
.+.....+
T Consensus 460 ~~g~~~~l 467 (1045)
T 1k32_A 460 EGRKIFAA 467 (1045)
T ss_dssp TTTEEEEC
T ss_pred CCCcEEEe
Confidence 98875444
No 274
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=89.47 E-value=2.5 Score=30.78 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=24.4
Q ss_pred cchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012184 386 STHSELSKELSSVQGQLVAERSRCFKLEAQIA 417 (469)
Q Consensus 386 ~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~ 417 (469)
..++++++++...+.||...++++.+.+++.+
T Consensus 5 ~~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e 36 (96)
T 2ic9_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVE 36 (96)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677888888888888888888877777654
No 275
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=89.36 E-value=1.5 Score=31.02 Aligned_cols=26 Identities=4% Similarity=0.101 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHH
Q 012184 391 LSKELSSVQGQLVAERSRCFKLEAQI 416 (469)
Q Consensus 391 ~~~el~~~~~~l~~~~~~~~~~~~~~ 416 (469)
+...++.++..++.+++++..++.++
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~L 36 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSL 36 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 276
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=89.19 E-value=10 Score=32.80 Aligned_cols=156 Identities=12% Similarity=0.114 Sum_probs=81.0
Q ss_pred CeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe-EEEee--cCC-CCCCCCcceEEEE-ECCEEEEEeccCCCCCcc
Q 012184 55 DHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL-CGVME--TSG-KVPVARGGHSVTL-VGSRLIIFGGEDRSRKLL 129 (469)
Q Consensus 55 ~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~-W~~~~--~~g-~~p~~r~~~~~~~-~~~~lyi~GG~~~~~~~~ 129 (469)
.-+++..++++|+|=|. .+|+++..... ..... ... .+| .....+... .++++|+|-|
T Consensus 33 ~DAi~~~~g~~~fFkg~--------~~Wr~~~~~~~~~~P~~I~~~wp~lp-~~IDAA~~~~~~~k~yfFkG-------- 95 (218)
T 1gen_A 33 FDGIAQIRGEIFFFKDR--------FIWRTVTPRDKPMGPLLVATFWPELP-EKIDAVYEAPQEEKAVFFAG-------- 95 (218)
T ss_dssp CSEEEEETTEEEEEETT--------EEEEESSTTSCCEEEEEGGGTCTTSC-SCCSEEEEETTTTEEEEEET--------
T ss_pred EeEEEeCCCcEEEEECC--------EEEEEeCCCCccCCCEEHHHhcCCCC-CCccEEEEECCCCEEEEEeC--------
Confidence 34566779999999663 27777655422 22211 111 122 222222222 2578999955
Q ss_pred CcEEEEECCCCe---EEEeeeCCCCCCC-CCCceEEEE-cCcEEEEEecCCCCcccCcEEEEECCCCceEee---eecCC
Q 012184 130 NDVHFLDLETMT---WDAVEVTQTPPAP-RYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP---EIKGD 201 (469)
Q Consensus 130 ~~v~~~d~~t~~---W~~~~~~g~~p~~-r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~---~~~~~ 201 (469)
+..|+|+-.+.. =+.+...| .|.. ..-.++... .++++|+|-| +..|+||..+.+-..- .+...
T Consensus 96 ~~yW~y~~~~~~~gyPk~I~~~g-~p~~~~~IDAAf~~~~~g~~YfFkG-------~~ywr~d~~~~~v~~gyPr~i~~~ 167 (218)
T 1gen_A 96 NEYWIYSASTLERGYPKPLTSLG-LPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRYNEVKKKMDPGFPKLIADA 167 (218)
T ss_dssp TEEEEEETTEECTTCSEEGGGGT-CCTTCCCCSEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCEEHHHH
T ss_pred CEEEEEcCccccCCCCccHhhcC-CCCCcCCccEEEEEcCCCeEEEEEC-------CEEEEEECccccccCCCCcchhhc
Confidence 347888842100 01111112 2221 122334433 4789999987 5789999876643221 00000
Q ss_pred -CCCCCcceEEEEEC--CEEEEEecCCCCCCcceEEEEECCCCc
Q 012184 202 -LVTGRAGHAGITID--ENWYIVGGGDNNNGCQETIVLNMTKLA 242 (469)
Q Consensus 202 -~p~~r~~~~~~~~~--~~l~v~GG~~~~~~~~d~~~~d~~~~~ 242 (469)
+..+..-.++...+ +.+|+|=| +..|+||..+..
T Consensus 168 w~g~p~~idaAf~~~~~g~~YfFkg-------~~y~~~~~~~~~ 204 (218)
T 1gen_A 168 WNAIPDNLDAVVDLQGGGHSYFFKG-------AYYLKLENQSLK 204 (218)
T ss_dssp SSSCCSSCSEEEECTTTCEEEEEET-------TEEEEEETTEEE
T ss_pred cCCCCCCCCEEEEEcCCCcEEEEEC-------CEEEEEECCcee
Confidence 11223334555544 78999977 368899886554
No 277
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=89.15 E-value=0.96 Score=35.05 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=12.0
Q ss_pred chhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012184 387 THSELSKELSSVQGQLVAERSRCFKLEAQIA 417 (469)
Q Consensus 387 ~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~ 417 (469)
.+.+++.++.+.+.+.++....+..+..+++
T Consensus 48 ~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 48 HVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444443333333333333443333
No 278
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=89.09 E-value=6.5 Score=30.38 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 012184 410 FKLEAQIAELQKMLESSQ 427 (469)
Q Consensus 410 ~~~~~~~~e~~~~l~~~~ 427 (469)
.+|+.+++-|++++.-+.
T Consensus 86 ~dLE~~iesL~eEl~FLK 103 (119)
T 3ol1_A 86 LDLERKVESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 279
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=88.92 E-value=2.1 Score=30.67 Aligned_cols=30 Identities=33% Similarity=0.245 Sum_probs=12.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 012184 398 VQGQLVAERSRCFKLEAQIAELQKMLESSQ 427 (469)
Q Consensus 398 ~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~ 427 (469)
++.++..++..+..|.-++++++.++.+++
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~ 54 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVV 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 280
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=88.82 E-value=13 Score=33.45 Aligned_cols=196 Identities=10% Similarity=0.073 Sum_probs=91.3
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCC--eEEEeecCCCCCCCCcceEEEEE----CCEEEEEeccCCCCCccCcEEEE
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETN--LCGVMETSGKVPVARGGHSVTLV----GSRLIIFGGEDRSRKLLNDVHFL 135 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~--~W~~~~~~g~~p~~r~~~~~~~~----~~~lyi~GG~~~~~~~~~~v~~~ 135 (469)
++.+++.|+.++ .+..||+.+. .+..+.. .......-.++.+ ++.+++.|+.+. .+.+|
T Consensus 22 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~d~~~l~s~~~dg------~v~vw 86 (351)
T 3f3f_A 22 YGRHVATCSSDQ------HIKVFKLDKDTSNWELSDS---WRAHDSSIVAIDWASPEYGRIIASASYDK------TVKLW 86 (351)
T ss_dssp SSSEEEEEETTS------EEEEEEECSSSCCEEEEEE---EECCSSCEEEEEECCGGGCSEEEEEETTS------CEEEE
T ss_pred CCCEEEEeeCCC------eEEEEECCCCCCcceecce---eccCCCcEEEEEEcCCCCCCEEEEEcCCC------eEEEE
Confidence 555666666432 3667776643 4444331 1112222233333 256777776543 37788
Q ss_pred ECCCC-------eEEEeeeCCCCCCCCCCceEEEEcC--cEEEEEecCCCCcccCcEEEEECCCCc----eEeeeec---
Q 012184 136 DLETM-------TWDAVEVTQTPPAPRYDHSAALHAN--RYLIVFGGCSHSIFFNDLHVLDLQTNE----WSQPEIK--- 199 (469)
Q Consensus 136 d~~t~-------~W~~~~~~g~~p~~r~~~~~~~~~~--~~l~v~GG~~~~~~~~~i~~~d~~~~~----W~~~~~~--- 199 (469)
|+.+. .|..+...... ...-.++....+ +.+++.|+.+ ..+.+||+.+.. |......
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~ 159 (351)
T 3f3f_A 87 EEDPDQEECSGRRWNKLCTLNDS--KGSLYSVKFAPAHLGLKLACLGND-----GILRLYDALEPSDLRSWTLTSEMKVL 159 (351)
T ss_dssp EECTTSCTTSSCSEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEETT-----CEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred ecCCCcccccccCcceeeeeccc--CCceeEEEEcCCCCCcEEEEecCC-----CcEEEecCCChHHhcccccccccccc
Confidence 87764 33333321111 111122233223 5566666654 358889987654 3221100
Q ss_pred CCCCCCC--cceEEEEE----CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCc--
Q 012184 200 GDLVTGR--AGHAGITI----DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEH-- 271 (469)
Q Consensus 200 ~~~p~~r--~~~~~~~~----~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~-- 271 (469)
...+... ...++... ++.++++|+.++ .+..++........+..+.... ..+..+...+++
T Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~h~------~~i~~~~~~p~~~~ 228 (351)
T 3f3f_A 160 SIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ-----AIIYQRGKDGKLHVAAKLPGHK------SLIRSISWAPSIGR 228 (351)
T ss_dssp SCCCSSCSCCCEEEEECCCSSSCCEEEEEETTE-----EEEEEECTTSCEEEEEECCCCC------SCEEEEEECCCSSC
T ss_pred ccccCCcccceeEEEeccCCCCCcEEEEecCCC-----cEEEEccCCCceeeeeecCCCC------cceeEEEECCCCCC
Confidence 0111111 11122222 256777776432 3445555555554444333221 123334444444
Q ss_pred --EEEEEeccCCCCCceEEEEECCC
Q 012184 272 --HLVAFGGYNGKYNNEVFVMRLKP 294 (469)
Q Consensus 272 --~l~v~GG~~~~~~~~~~~~d~~~ 294 (469)
.+++.|+.++. +.+||+..
T Consensus 229 ~~~~l~s~~~dg~----i~iwd~~~ 249 (351)
T 3f3f_A 229 WYQLIATGCKDGR----IRIFKITE 249 (351)
T ss_dssp SSEEEEEEETTSC----EEEEEEEE
T ss_pred cceEEEEEcCCCe----EEEEeCCC
Confidence 78888887663 66666643
No 281
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.68 E-value=1.6 Score=42.15 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=19.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 012184 420 QKMLESSQTIENEVQILRQQKSAFEQEME 448 (469)
Q Consensus 420 ~~~l~~~~~~e~e~~~~~q~~~~~~~~~~ 448 (469)
..+++.++.|+.-++.++.+++++|-.++
T Consensus 127 dnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 127 IEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556677777777777777776654
No 282
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=88.20 E-value=6.9 Score=29.56 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 012184 391 LSKELSSVQGQL 402 (469)
Q Consensus 391 ~~~el~~~~~~l 402 (469)
+++.+.++..++
T Consensus 27 ~e~~k~eL~~~~ 38 (107)
T 2no2_A 27 LEREKKELEDSL 38 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 283
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=88.16 E-value=5.5 Score=31.84 Aligned_cols=11 Identities=9% Similarity=0.096 Sum_probs=3.9
Q ss_pred chhhHHHHHHH
Q 012184 387 THSELSKELSS 397 (469)
Q Consensus 387 ~~~e~~~el~~ 397 (469)
.+.+++.+++.
T Consensus 83 ki~dLeeel~e 93 (152)
T 3a7p_A 83 EIRRLKEVIAL 93 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 284
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=87.91 E-value=16 Score=33.39 Aligned_cols=186 Identities=10% Similarity=0.131 Sum_probs=85.6
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
.+ +++.|+.+. .+..||+.++.+..+... ..........++.+ ++.+++.|+.+. .+.+||+..
T Consensus 24 ~~-~las~~~D~------~i~lw~~~~~~~~~~~~~-~~~~h~~~v~~v~~sp~~~~las~s~D~------~v~iw~~~~ 89 (330)
T 2hes_X 24 QG-ILATGSTDR------KIKLVSVKYDDFTLIDVL-DETAHKKAIRSVAWRPHTSLLAAGSFDS------TVSIWAKEE 89 (330)
T ss_dssp TT-EEEEEESSS------CEEEEECSSSCCEEEEEE-CTTCCCSCEEEEEECTTSSEEEEEETTS------CEEEEEC--
T ss_pred CC-EEEEEcCCC------EEEEEEecCCCeEEEEEE-ecCCccCCEEEEEECCCCCEEEEEeCCC------cEEEEEccc
Confidence 44 666666432 288888887655444321 00101112223333 456777776543 377777643
Q ss_pred C-----eEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCC--CceEeeeecCCCCCCCcceEEE
Q 012184 140 M-----TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT--NEWSQPEIKGDLVTGRAGHAGI 212 (469)
Q Consensus 140 ~-----~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~--~~W~~~~~~~~~p~~r~~~~~~ 212 (469)
. .+..+..... ....-.++....++..++.|+.+ ..+.++|+.. ..+..+...... ......+
T Consensus 90 ~~~~~~~~~~~~~~~~--h~~~V~~v~~sp~g~~las~s~D-----~~v~iwd~~~~~~~~~~~~~~~~h---~~~v~~v 159 (330)
T 2hes_X 90 SADRTFEMDLLAIIEG--HENEVKGVAWSNDGYYLATCSRD-----KSVWIWETDESGEEYECISVLQEH---SQDVKHV 159 (330)
T ss_dssp -----CCCEEEEEEC------CEEEEEECTTSCEEEEEETT-----SCEEEEECCTTCCCCEEEEEECCC---SSCEEEE
T ss_pred CcCccccceeEEEEcC--CCCcEEEEEECCCCCEEEEEeCC-----CEEEEEeccCCCCCeEEEEEeccC---CCceEEE
Confidence 2 1222211100 00111122222356677777655 3578888742 334443321111 1111222
Q ss_pred EE--CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCC--cEEEEEeccCCC
Q 012184 213 TI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGE--HHLVAFGGYNGK 282 (469)
Q Consensus 213 ~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~--~~l~v~GG~~~~ 282 (469)
.+ ++.+++.|+.++ .+.++|+.+..|..+..+.+.. ..+..+...++ ..+++.|+.++.
T Consensus 160 ~~~p~~~~l~s~s~D~-----~i~iW~~~~~~~~~~~~~~~h~------~~v~~~~~~~~~~~~~l~s~s~D~~ 222 (330)
T 2hes_X 160 IWHPSEALLASSSYDD-----TVRIWKDYDDDWECVAVLNGHE------GTVWSSDFDKTEGVFRLCSGSDDST 222 (330)
T ss_dssp EECSSSSEEEEEETTS-----CEEEEEEETTEEEEEEEECCCS------SCEEEEEECCSSSSCEEEEEETTSC
T ss_pred EECCCCCEEEEEcCCC-----eEEEEECCCCCeeEEEEccCCC------CcEEEEEecCCCCeeEEEEEeCCCe
Confidence 22 456777777543 4667777777776655443322 12222333332 456777776653
No 285
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.88 E-value=9.5 Score=30.77 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=7.6
Q ss_pred hhhHHHHHHHHHHHHHHh
Q 012184 388 HSELSKELSSVQGQLVAE 405 (469)
Q Consensus 388 ~~e~~~el~~~~~~l~~~ 405 (469)
......++..+..++..+
T Consensus 53 ~~~~~~e~~~L~~~l~~E 70 (154)
T 2ocy_A 53 LSDRDDEVKRLREDIAKE 70 (154)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHH
Confidence 333444444444444444
No 286
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=87.87 E-value=2.8 Score=28.97 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHH
Q 012184 393 KELSSVQGQLVAERSRCFKLEAQI 416 (469)
Q Consensus 393 ~el~~~~~~l~~~~~~~~~~~~~~ 416 (469)
..++.++.+++.+++++..++..+
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~L 30 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRL 30 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 287
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=87.72 E-value=14 Score=33.39 Aligned_cols=105 Identities=9% Similarity=0.042 Sum_probs=54.5
Q ss_pred cceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCC
Q 012184 78 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR 155 (469)
Q Consensus 78 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r 155 (469)
...+++||+.++++..+. ....| .+++.. ++ .||+...... ....+.+++|++..............+ ..
T Consensus 168 ~~~v~~~d~~~g~~~~~~-~~~~p-----~gl~~spdg~~lyv~~~~~~-~~~~~~i~~~~~~~~~l~~~~~~~~~~-~~ 239 (305)
T 3dr2_A 168 HHSVYRLPPDGSPLQRMA-DLDHP-----NGLAFSPDEQTLYVSQTPEQ-GHGSVEITAFAWRDGALHDRRHFASVP-DG 239 (305)
T ss_dssp CEEEEEECSSSCCCEEEE-EESSE-----EEEEECTTSSEEEEEECCC----CCCEEEEEEEETTEEEEEEEEECCS-SS
T ss_pred CCeEEEEcCCCCcEEEEe-cCCCC-----cceEEcCCCCEEEEEecCCc-CCCCCEEEEEEecCCCccCCeEEEECC-CC
Confidence 356999999888877664 11111 223322 33 5777643211 011357999998766532222111111 11
Q ss_pred CCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeee
Q 012184 156 YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPE 197 (469)
Q Consensus 156 ~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~ 197 (469)
.-..++...++.||+..+ +.|++|++.......+.
T Consensus 240 ~pdgi~~d~~G~lwv~~~-------~gv~~~~~~g~~~~~~~ 274 (305)
T 3dr2_A 240 LPDGFCVDRGGWLWSSSG-------TGVCVFDSDGQLLGHIP 274 (305)
T ss_dssp CCCSEEECTTSCEEECCS-------SEEEEECTTSCEEEEEE
T ss_pred CCCeEEECCCCCEEEecC-------CcEEEECCCCCEEEEEE
Confidence 112344444666777542 35999999766555543
No 288
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=87.64 E-value=3.5 Score=41.69 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHHH
Q 012184 428 TIENEVQILRQQKS 441 (469)
Q Consensus 428 ~~e~e~~~~~q~~~ 441 (469)
++|+|.+++.++.+
T Consensus 534 kme~~~~~~~~e~~ 547 (592)
T 1f5n_A 534 KMENDRVQLLKEQE 547 (592)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 289
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=87.58 E-value=2.3 Score=35.35 Aligned_cols=11 Identities=27% Similarity=0.335 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 012184 430 ENEVQILRQQK 440 (469)
Q Consensus 430 e~e~~~~~q~~ 440 (469)
.+|+.++++++
T Consensus 119 ~~Ei~~Lr~qL 129 (175)
T 3lay_A 119 AKEMESLGQKL 129 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 290
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=87.43 E-value=3.7 Score=29.71 Aligned_cols=14 Identities=14% Similarity=0.328 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHHH
Q 012184 428 TIENEVQILRQQKS 441 (469)
Q Consensus 428 ~~e~e~~~~~q~~~ 441 (469)
.|+.|+.-.++-++
T Consensus 67 ~Le~EIatYRkLLE 80 (86)
T 1x8y_A 67 ALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHc
Confidence 45555555554443
No 291
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=87.15 E-value=27 Score=35.21 Aligned_cols=108 Identities=11% Similarity=0.148 Sum_probs=52.9
Q ss_pred CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCC-Cc
Q 012184 165 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTK-LA 242 (469)
Q Consensus 165 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~-~~ 242 (469)
++.+++.|+.+ +.+.+||+.+.....+...+ ... .-.+++.. ++.+++.|+.+ ..+.+||+.+ ..
T Consensus 459 dg~~lasgs~D-----~~v~lwd~~~~~~~~~~~~~--h~~-~v~~v~fspdg~~las~s~d-----~~v~~w~~~~~~~ 525 (611)
T 1nr0_A 459 DKQFVAVGGQD-----SKVHVYKLSGASVSEVKTIV--HPA-EITSVAFSNNGAFLVATDQS-----RKVIPYSVANNFE 525 (611)
T ss_dssp TSCEEEEEETT-----SEEEEEEEETTEEEEEEEEE--CSS-CEEEEEECTTSSEEEEEETT-----SCEEEEEGGGTTE
T ss_pred CCCEEEEeCCC-----CeEEEEEccCCceeeeeccC--CCC-ceEEEEECCCCCEEEEEcCC-----CCEEEEEcCCCCc
Confidence 44455555533 35777777666554332111 111 11122222 45666666643 2467777765 22
Q ss_pred EEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184 243 WSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 243 W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~ 295 (469)
.+.... . ......+..+...+++.+++.|+.++. +.++|+...
T Consensus 526 --~~~~~~--~--~~H~~~V~~v~fspdg~~lasgs~D~~----v~lW~~~~~ 568 (611)
T 1nr0_A 526 --LAHTNS--W--TFHTAKVACVSWSPDNVRLATGSLDNS----VIVWNMNKP 568 (611)
T ss_dssp --ESCCCC--C--CCCSSCEEEEEECTTSSEEEEEETTSC----EEEEETTCT
T ss_pred --eeeeee--e--eecccceeEEEECCCCCEEEEEECCCc----EEEEECCCc
Confidence 111100 0 001122344455566778888887663 778887653
No 292
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=87.08 E-value=15 Score=32.28 Aligned_cols=156 Identities=8% Similarity=0.002 Sum_probs=84.9
Q ss_pred eeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCc
Q 012184 56 HCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLND 131 (469)
Q Consensus 56 ~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~ 131 (469)
+.+++. ++.||+.-.. .+.+.++|+....-..+...+ . ... ..++.- +++||+..... ..+.
T Consensus 82 ~~ia~d~~~~~lyv~d~~------~~~I~~~~~~g~~~~~~~~~~-~--~~P-~~i~vd~~~g~lyv~~~~~----~~~~ 147 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDSQ------LDRIEVAKMDGTQRRVLFDTG-L--VNP-RGIVTDPVRGNLYWTDWNR----DNPK 147 (267)
T ss_dssp EEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECSS-C--SSE-EEEEEETTTTEEEEEECCS----SSCE
T ss_pred cEEEEEecCCeEEEEECC------CCEEEEEEcCCCCEEEEEECC-C--CCc-cEEEEeeCCCEEEEEECCC----CCcE
Confidence 444443 6789987432 245899998755433343221 1 111 233333 57899875321 1456
Q ss_pred EEEEECCCCeEEEeeeCCCCCCCCCCceEEEEc-CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceE
Q 012184 132 VHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHA 210 (469)
Q Consensus 132 v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~ 210 (469)
++++++....-..+.. ... ..-..+++.. +++||+.-.. .+.|++||+.+..-..+... .. ..+.
T Consensus 148 I~~~~~dg~~~~~~~~-~~~---~~P~gia~d~~~~~lyv~d~~-----~~~I~~~~~~g~~~~~~~~~--~~---~P~g 213 (267)
T 1npe_A 148 IETSHMDGTNRRILAQ-DNL---GLPNGLTFDAFSSQLCWVDAG-----THRAECLNPAQPGRRKVLEG--LQ---YPFA 213 (267)
T ss_dssp EEEEETTSCCCEEEEC-TTC---SCEEEEEEETTTTEEEEEETT-----TTEEEEEETTEEEEEEEEEC--CC---SEEE
T ss_pred EEEEecCCCCcEEEEE-CCC---CCCcEEEEcCCCCEEEEEECC-----CCEEEEEecCCCceEEEecC--CC---CceE
Confidence 8899887544333321 111 1122334433 4688886532 36799999876433322211 11 2235
Q ss_pred EEEECCEEEEEecCCCCCCcceEEEEECCCCcEE
Q 012184 211 GITIDENWYIVGGGDNNNGCQETIVLNMTKLAWS 244 (469)
Q Consensus 211 ~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~ 244 (469)
++..++.+|+.-.. .+.+.++|+.+.+-.
T Consensus 214 i~~d~~~lyva~~~-----~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 214 VTSYGKNLYYTDWK-----TNSVIAMDLAISKEM 242 (267)
T ss_dssp EEEETTEEEEEETT-----TTEEEEEETTTTEEE
T ss_pred EEEeCCEEEEEECC-----CCeEEEEeCCCCCce
Confidence 55568889987432 247899999876654
No 293
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=87.04 E-value=14 Score=38.11 Aligned_cols=108 Identities=10% Similarity=0.031 Sum_probs=53.8
Q ss_pred eEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCC---CCccCcEEEEECCCCeEEEeeeCCCCCCC
Q 012184 80 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRS---RKLLNDVHFLDLETMTWDAVEVTQTPPAP 154 (469)
Q Consensus 80 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~---~~~~~~v~~~d~~t~~W~~~~~~g~~p~~ 154 (469)
.++.+|+.++.-..+...... .......+.+ +++.++++..... ..+...++++|+.++....+..... ...
T Consensus 38 ~i~~~d~~~g~~~~~~~~~~~--~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~~~ 114 (723)
T 1xfd_A 38 TVRLWNVETNTSTVLIEGKKI--ESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEV-SNA 114 (723)
T ss_dssp CEEEBCGGGCCCEEEECTTTT--TTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTC-CSC
T ss_pred CEEEEECCCCcEEEEeccccc--cccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcc-ccc
Confidence 488888888875555421111 0001122223 4555555543221 1234789999999887655542111 001
Q ss_pred CCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeee
Q 012184 155 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPE 197 (469)
Q Consensus 155 r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~ 197 (469)
... .+..-.|++.++|+.. +.++++|+.++....+.
T Consensus 115 ~~~-~~~~SPdG~~la~~~~------~~i~~~~~~~g~~~~~~ 150 (723)
T 1xfd_A 115 KLQ-YAGWGPKGQQLIFIFE------NNIYYCAHVGKQAIRVV 150 (723)
T ss_dssp CCS-BCCBCSSTTCEEEEET------TEEEEESSSSSCCEEEE
T ss_pred ccc-ccEECCCCCEEEEEEC------CeEEEEECCCCceEEEe
Confidence 111 1111124444455432 47889998887766554
No 294
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=86.87 E-value=7.1 Score=31.20 Aligned_cols=34 Identities=12% Similarity=0.150 Sum_probs=14.9
Q ss_pred hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhh
Q 012184 373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAER 406 (469)
Q Consensus 373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~ 406 (469)
+...+++++..++..+.+..+-++.++.++..++
T Consensus 76 El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLq 109 (152)
T 3a7p_A 76 ELKSKEQEIRRLKEVIALKNKNTERLNAALISGT 109 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444433
No 295
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=86.84 E-value=4.2 Score=36.41 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=15.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 012184 419 LQKMLESSQTIENEVQILRQQKSAFEQEMER 449 (469)
Q Consensus 419 ~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~~ 449 (469)
.++.|....++..+..++.++++++++++++
T Consensus 71 mq~~Le~Ere~~~~Rd~~a~~k~~Le~~ier 101 (302)
T 3ibp_A 71 LQQLLEREREAIVERDEVGARKNAVDEEIER 101 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444434444445555556666666654
No 296
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.76 E-value=2.1 Score=33.61 Aligned_cols=8 Identities=13% Similarity=0.501 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 012184 413 EAQIAELQ 420 (469)
Q Consensus 413 ~~~~~e~~ 420 (469)
+.++++|.
T Consensus 73 e~ElE~LT 80 (135)
T 2e7s_A 73 NKEVEDLT 80 (135)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 297
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=86.68 E-value=27 Score=34.79 Aligned_cols=138 Identities=9% Similarity=-0.072 Sum_probs=69.8
Q ss_pred ceEEEEEC--CCCeEEEeecCCCCCCCCcceEEEEEC-CEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCC
Q 012184 79 MIVRFIDL--ETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR 155 (469)
Q Consensus 79 ~~~~~~d~--~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r 155 (469)
..+|..++ .... ..+. ..+..+ ..+...+ +.+++..+.. +.+.+||+.++....+... +.
T Consensus 90 ~~l~~~~~~~~g~~-~~l~---~~~~~~--~~~~s~dg~~~~~~s~~~------~~~~l~d~~~g~~~~l~~~---~~-- 152 (582)
T 3o4h_A 90 HALFKVNTSRPGEE-QRLE---AVKPMR--ILSGVDTGEAVVFTGATE------DRVALYALDGGGLRELARL---PG-- 152 (582)
T ss_dssp EEEEEEETTSTTCC-EECT---TSCSBE--EEEEEECSSCEEEEEECS------SCEEEEEEETTEEEEEEEE---SS--
T ss_pred eEEEEEeccCCCcc-cccc---CCCCce--eeeeCCCCCeEEEEecCC------CCceEEEccCCcEEEeecC---CC--
Confidence 35777887 4333 2332 112111 2233344 4555554432 2244789888887776531 11
Q ss_pred CCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEE
Q 012184 156 YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETI 234 (469)
Q Consensus 156 ~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~ 234 (469)
.....-.|++.+++++.+.. ....++++|+.+..+..+.. .+ ......+.. +++.++.+..+ ....++
T Consensus 153 --~~~~~spDG~~la~~~~~~~-~~~~i~~~d~~~g~~~~l~~---~~--~~~~~~~~SpDG~~l~~~~~~---~~~~i~ 221 (582)
T 3o4h_A 153 --FGFVSDIRGDLIAGLGFFGG-GRVSLFTSNLSSGGLRVFDS---GE--GSFSSASISPGMKVTAGLETA---REARLV 221 (582)
T ss_dssp --CEEEEEEETTEEEEEEEEET-TEEEEEEEETTTCCCEEECC---SS--CEEEEEEECTTSCEEEEEECS---SCEEEE
T ss_pred --ceEEECCCCCEEEEEEEcCC-CCeEEEEEcCCCCCceEeec---CC--CccccceECCCCCEEEEccCC---CeeEEE
Confidence 23332235545555543322 12459999999998876631 11 111222222 44544433321 235788
Q ss_pred EEECCCCcEE
Q 012184 235 VLNMTKLAWS 244 (469)
Q Consensus 235 ~~d~~~~~W~ 244 (469)
++|+.+....
T Consensus 222 ~~d~~~~~~~ 231 (582)
T 3o4h_A 222 TVDPRDGSVE 231 (582)
T ss_dssp EECTTTCCEE
T ss_pred EEcCCCCcEE
Confidence 9998887766
No 298
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=86.53 E-value=3.2 Score=30.22 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=5.5
Q ss_pred hcchhhHHHHHHHHH
Q 012184 385 NSTHSELSKELSSVQ 399 (469)
Q Consensus 385 ~~~~~e~~~el~~~~ 399 (469)
+..+..++.++..++
T Consensus 28 e~~Ie~LE~~i~~le 42 (89)
T 2lw1_A 28 PQLLEDLEAKLEALQ 42 (89)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 299
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=86.52 E-value=2.6 Score=34.93 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=18.9
Q ss_pred HhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184 378 REKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML 423 (469)
Q Consensus 378 ~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l 423 (469)
+++++.....++++..|...+.++++....++..|+++++.++.+.
T Consensus 12 q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 12 KQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444444555555555555555544444455555544444443
No 300
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=86.40 E-value=17 Score=39.73 Aligned_cols=191 Identities=11% Similarity=0.130 Sum_probs=105.0
Q ss_pred CcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEE-EeeeC-CCCCCCCCCceEEEEc--CcEEEEEecCCCCcc
Q 012184 104 RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWD-AVEVT-QTPPAPRYDHSAALHA--NRYLIVFGGCSHSIF 179 (469)
Q Consensus 104 r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~-~~~~~-g~~p~~r~~~~~~~~~--~~~l~v~GG~~~~~~ 179 (469)
-.++++....+.+ ++|..+... +...++.|+.....|. ..... +.......++++++.. +...||+|--. ...
T Consensus 334 q~GfSa~~t~d~~-~~GapG~~~-w~G~v~~~~~~~~~~~~~~~~~~~~~~~sylGySVa~~~~~g~~~~v~GAP~-~~~ 410 (1095)
T 3k6s_A 334 QEGFSAVFTPDGP-VLGAVGSFT-WSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQSLVLGAPR-YQH 410 (1095)
T ss_dssp CTTSSEECCTTCC-EEEESCSTT-TTBEEEECCSSSCCEEECCCSSCCCCCSCCBTSSEECCCCSSSCEEEEEETT-GGG
T ss_pred cccccceecCCcc-eEcccccCC-ccceeEEecCCCcceeeccccccccccccccceeeEEeccCCceEEEEEccc-ccc
Confidence 3455666555555 788665433 4566888876654432 22111 1222233466665422 23356666432 233
Q ss_pred cCcEEEEECCCCceEeeee-cCCCCCCCcceEEEEEC------CEEEEEecCC--CCCCcceEEEEECCC--CcEEEecc
Q 012184 180 FNDLHVLDLQTNEWSQPEI-KGDLVTGRAGHAGITID------ENWYIVGGGD--NNNGCQETIVLNMTK--LAWSILTS 248 (469)
Q Consensus 180 ~~~i~~~d~~~~~W~~~~~-~~~~p~~r~~~~~~~~~------~~l~v~GG~~--~~~~~~d~~~~d~~~--~~W~~~~~ 248 (469)
...+++|......|..... .+.....+.+++++..+ ..++++|.-. .......+++|.... ..|.....
T Consensus 411 ~G~V~i~~~~~~~~~~~~~~~g~~~gs~fG~sva~~DvngDG~~DllvvGAP~~~~~~~~G~Vyvy~~~~~~~~~~~~~~ 490 (1095)
T 3k6s_A 411 TGKAVIFTQVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPRGWRRWWCDAV 490 (1095)
T ss_dssp TCEEEEEECCTTTCCEEEEECCSSTTSCTTSCEEEECSSSSSSCCEEEEECSSCCSSCCCBCEEEEECCSSTTCCCSCSS
T ss_pred cceEEEEEecCCcceEEeecccCcccCcCCceEEEEEeCCCCCccEEEECCccccCcCCCCEEEEEEeCCCCcceeeeEE
Confidence 5679999988888987543 44445557777777652 3577777421 112234688886543 45765444
Q ss_pred CCCCC--CCCCCCcceEEE-EEcCC--cEEEEEeccCCCCCceEEEEECCCC-CC
Q 012184 249 VKGRN--PLASEGLSVCSA-IIEGE--HHLVAFGGYNGKYNNEVFVMRLKPR-DI 297 (469)
Q Consensus 249 ~~~~~--p~~r~~~s~~~~-~~~~~--~~l~v~GG~~~~~~~~~~~~d~~~~-~w 297 (469)
+.+.. +..|+|++++.+ =++++ .-|+|...........+|+|.-... .|
T Consensus 491 l~g~~~~~~~~FG~sva~~gD~NgDG~~Dl~VGAP~~~~~~G~vyi~~g~~~~g~ 545 (1095)
T 3k6s_A 491 LYGEQGHPWGRFGAALTVLGDVNGDKLTDVVIGAPGEEENRGAVYLFHGVLGPSI 545 (1095)
T ss_dssp CCCCCSCSSCCBTSCEEEEECSSSSSCCEEEEECTTTTTSCCBEEEEEBCSSSCB
T ss_pred eecccCCccccCccceEeecccCCCCCcCEEEeCCcCCCCCCEEEEecCCCCCCc
Confidence 43332 356788887763 23332 3455443333334567899887655 44
No 301
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=86.39 E-value=12 Score=35.30 Aligned_cols=158 Identities=9% Similarity=0.127 Sum_probs=80.4
Q ss_pred eeeEEECCEEEEEccccCCCCCcceEEEEECCCCeE--EEeecCC-CCCCCCcceEEEE-ECCEEEEEeccCCCCCccCc
Q 012184 56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLC--GVMETSG-KVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLND 131 (469)
Q Consensus 56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W--~~~~~~g-~~p~~r~~~~~~~-~~~~lyi~GG~~~~~~~~~~ 131 (469)
-+++..++++|+|=|. .+|+++.....- ..+...- .+| .....+... .++++|+|-|. .
T Consensus 184 DAv~~~~g~~~fFkg~--------~~Wr~~~~~~~~~p~~I~~~wpgLP-~~iDAa~~~~~~g~~~fFkg~--------~ 246 (365)
T 3ba0_A 184 DAVTTVGNKIFFFKDR--------FFWLKVSERPKTSVNLISSLWPTLP-SGIEAAYEIEARNQVFLFKDD--------K 246 (365)
T ss_dssp SCEEEETTEEEEEETT--------EEEECCSSCCCCCEEEHHHHCSSCC-SSCCEEEEEGGGTEEEEEETT--------E
T ss_pred eeEEEcCCeEEEEeCC--------EEEEEcCCCccCCccchhhhccCCC-CCccEEEEecCCCEEEEEeCC--------E
Confidence 4556679999999652 267776543221 1111110 123 222222222 26899999652 3
Q ss_pred EEEEECCCCe--E-EEeeeCCCCCCC-CCCceEEEE-cCcEEEEEecCCCCcccCcEEEEECCCCceEe--eeec-CCC-
Q 012184 132 VHFLDLETMT--W-DAVEVTQTPPAP-RYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ--PEIK-GDL- 202 (469)
Q Consensus 132 v~~~d~~t~~--W-~~~~~~g~~p~~-r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~--~~~~-~~~- 202 (469)
+|+|+..... + +.+...| +|.. ..--++... .++++|+|-| +..|+||..+.+-.. +... ...
T Consensus 247 yWr~~~~~~~~gyPk~I~~~G-lP~~~~~IDAA~~~~~~~~~yfFkG-------~~yw~yd~~~~~v~~gyPk~I~~~f~ 318 (365)
T 3ba0_A 247 YWLISNLRPEPNYPKSIHSFG-FPNFVKKIDAAVFNPRFYRTYFFVD-------NQYWRYDERRQMMDPGYPKLITKNFQ 318 (365)
T ss_dssp EEECSTTSCTTTCSEETTTTT-CCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCCCHHHHST
T ss_pred EEEEcCCcccCCCCceeeecc-CCCCCCCcCEEEEeCCCCEEEEEEC-------CEEEEEeCCcceecCCCCcchhhcCC
Confidence 5666533211 1 1121111 2321 122233333 3578999987 678999987654322 1000 001
Q ss_pred CCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEE
Q 012184 203 VTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSI 245 (469)
Q Consensus 203 p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~ 245 (469)
..+..-.++... ++++|+|=| +..|+||..+..-..
T Consensus 319 g~p~~iDaA~~~~~g~~YfFkg-------~~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 319 GIGPKIDAVFYSKNKYYYFFQG-------SNQFEYDFLLQRITK 355 (365)
T ss_dssp TCCSSCSEEEEETTTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred CCCCccceeeEecCCcEEEEeC-------CEEEEEECCccEEec
Confidence 112222344445 789999977 378999998876554
No 302
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=86.08 E-value=20 Score=32.76 Aligned_cols=193 Identities=12% Similarity=0.045 Sum_probs=93.9
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcc---eEEEEECCEEEEEeccCCCCCccCcEEEEECC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGG---HSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE 138 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~---~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~ 138 (469)
++.+++.||.++ .+..||+.+++-...-..+. ...... ...+..++.+.++-. .+.+..||+.
T Consensus 47 d~~~l~sg~~Dg------~v~iwd~~~~~~~~~~~~~~-v~~~~~~~~~~s~s~D~~i~~w~~-------~~~~~~~~~~ 112 (343)
T 3lrv_A 47 DKWVCMCRCEDG------ALHFTQLKDSKTITTITTPN-PRTGGEHPAIISRGPCNRLLLLYP-------GNQITILDSK 112 (343)
T ss_dssp EEEEEEEEEETT------EEEEEEESSSSCEEEEEEEC-CCTTCCCCSEEEECSTTEEEEEET-------TTEEEEEETT
T ss_pred CCCEEEEECCCC------cEEEEECCCCcEEEEEecCC-ceeeeeCCceEEecCCCeEEEEEc-------cCceEEeecC
Confidence 567777777543 27788877665322111111 111111 112222445555422 3356778877
Q ss_pred CCeE-EEeeeCCCCCCCCCCceEEEEc--CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-
Q 012184 139 TMTW-DAVEVTQTPPAPRYDHSAALHA--NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI- 214 (469)
Q Consensus 139 t~~W-~~~~~~g~~p~~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~- 214 (469)
+..- ..... + ....-.++.... ++.+++.|+.+ ..+.+||+.+..-..... . .......+++..
T Consensus 113 ~~~~~~~~~~-~---~~~~v~~~~~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~~~~~~~-~--~~~~~i~~~~~~p 180 (343)
T 3lrv_A 113 TNKVLREIEV-D---SANEIIYMYGHNEVNTEYFIWADNR-----GTIGFQSYEDDSQYIVHS-A--KSDVEYSSGVLHK 180 (343)
T ss_dssp TCCEEEEEEC-C---CSSCEEEEECCC---CCEEEEEETT-----CCEEEEESSSSCEEEEEC-C--CSSCCCCEEEECT
T ss_pred CcceeEEeec-C---CCCCEEEEEcCCCCCCCEEEEEeCC-----CcEEEEECCCCcEEEEEe-c--CCCCceEEEEECC
Confidence 7763 23221 1 111112222222 45567777754 358899998776543321 1 111112233333
Q ss_pred CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184 215 DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP 294 (469)
Q Consensus 215 ~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~ 294 (469)
++.+++.|+.+ ..+.+||+.+..-.. ..+.. .....+..+...+++.+++.|+ ++ .+.+||+.+
T Consensus 181 dg~~lasg~~d-----g~i~iwd~~~~~~~~-~~~~~-----~h~~~v~~l~fs~~g~~l~s~~-~~----~v~iwd~~~ 244 (343)
T 3lrv_A 181 DSLLLALYSPD-----GILDVYNLSSPDQAS-SRFPV-----DEEAKIKEVKFADNGYWMVVEC-DQ----TVVCFDLRK 244 (343)
T ss_dssp TSCEEEEECTT-----SCEEEEESSCTTSCC-EECCC-----CTTSCEEEEEECTTSSEEEEEE-SS----BEEEEETTS
T ss_pred CCCEEEEEcCC-----CEEEEEECCCCCCCc-cEEec-----cCCCCEEEEEEeCCCCEEEEEe-CC----eEEEEEcCC
Confidence 45677777743 258889988765320 01111 0112333444555566777776 32 588999876
Q ss_pred CC
Q 012184 295 RD 296 (469)
Q Consensus 295 ~~ 296 (469)
..
T Consensus 245 ~~ 246 (343)
T 3lrv_A 245 DV 246 (343)
T ss_dssp ST
T ss_pred CC
Confidence 53
No 303
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=86.08 E-value=18 Score=32.25 Aligned_cols=175 Identities=6% Similarity=0.006 Sum_probs=88.1
Q ss_pred ceEEEEccCCc--eeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe--E
Q 012184 16 VVMVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--C 91 (469)
Q Consensus 16 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W 91 (469)
.+..+|+.+++ |+.-... . ....+..+..+++||+.+ .+.++.||+ +++ |
T Consensus 16 ~v~~~d~~tG~~~w~~~~~~----------------~-~~~~~~~~~pdG~ilvs~--------~~~V~~~d~-~G~~~W 69 (276)
T 3no2_A 16 KIAIINKDTKEIVWEYPLEK----------------G-WECNSVAATKAGEILFSY--------SKGAKMITR-DGRELW 69 (276)
T ss_dssp EEEEEETTTTEEEEEEECCT----------------T-CCCCEEEECTTSCEEEEC--------BSEEEEECT-TSCEEE
T ss_pred EEEEEECCCCeEEEEeCCCc----------------c-CCCcCeEECCCCCEEEeC--------CCCEEEECC-CCCEEE
Confidence 78899998875 6543321 0 122233333477788842 134999999 554 6
Q ss_pred EEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECCCCe-EEEeeeCCCCCCC-CCCceEEEEcCcEE
Q 012184 92 GVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMT-WDAVEVTQTPPAP-RYDHSAALHANRYL 168 (469)
Q Consensus 92 ~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~t~~-W~~~~~~g~~p~~-r~~~~~~~~~~~~l 168 (469)
+--. +....-+++... ++.+++..... ...++.+|+.... |+... .+..+.+ ...+.+....++.+
T Consensus 70 ~~~~-----~~~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~-~~~~~~~~~~~~~v~~~~~G~~ 138 (276)
T 3no2_A 70 NIAA-----PAGCEMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEF-ETGIERPHAQFRQINKNKKGNY 138 (276)
T ss_dssp EEEC-----CTTCEEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEE-CCSCSSGGGSCSCCEECTTSCE
T ss_pred EEcC-----CCCccccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEec-cCCCCcccccccCceECCCCCE
Confidence 5432 111122333433 45555543321 2357888875442 44322 1111111 11112233335545
Q ss_pred EEEecCCCCcccCcEEEEECCCCc--eEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCC--cE
Q 012184 169 IVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKL--AW 243 (469)
Q Consensus 169 ~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~--~W 243 (469)
++.... .+.+.+||++ ++ |+.-. + ...+++... ++.++|.+..+ ..+..||+.+. .|
T Consensus 139 lv~~~~-----~~~v~~~d~~-G~~~w~~~~--~-----~~~~~~~~~~~g~~~v~~~~~-----~~v~~~d~~tG~~~w 200 (276)
T 3no2_A 139 LVPLFA-----TSEVREIAPN-GQLLNSVKL--S-----GTPFSSAFLDNGDCLVACGDA-----HCFVQLNLESNRIVR 200 (276)
T ss_dssp EEEETT-----TTEEEEECTT-SCEEEEEEC--S-----SCCCEEEECTTSCEEEECBTT-----SEEEEECTTTCCEEE
T ss_pred EEEecC-----CCEEEEECCC-CCEEEEEEC--C-----CCccceeEcCCCCEEEEeCCC-----CeEEEEeCcCCcEEE
Confidence 554432 2468999987 43 66421 1 112334444 56777776532 35889998854 46
Q ss_pred EE
Q 012184 244 SI 245 (469)
Q Consensus 244 ~~ 245 (469)
+.
T Consensus 201 ~~ 202 (276)
T 3no2_A 201 RV 202 (276)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 304
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=86.01 E-value=8.6 Score=28.39 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=13.9
Q ss_pred HhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHH
Q 012184 378 REKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLE 413 (469)
Q Consensus 378 ~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~ 413 (469)
..++..++....++-++|..++.+-..+...+..++
T Consensus 10 ~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le 45 (96)
T 3q8t_A 10 QRELKELALEEERLIQELEDVEKNRKVVAENLEKVQ 45 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333344333333344444444333333333333333
No 305
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=85.66 E-value=2.7 Score=30.54 Aligned_cols=71 Identities=11% Similarity=0.156 Sum_probs=32.0
Q ss_pred hhhhhhhhhhhhhHhhhhhhhcchh-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 012184 365 LSLTEVRTENSRFREKIDEVNSTHS-ELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS 441 (469)
Q Consensus 365 ~~~~~~~~~~~~l~~~~~~~~~~~~-e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~ 441 (469)
+.+...+.+...+.++....+.... +.+..+.+--.+++..+..+.+|+... ....++.|+|+..|+.+++
T Consensus 14 ELLD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h------~kmKq~YEeEI~rLr~eLe 85 (92)
T 3vp9_A 14 ELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTH------RKMKDAYEEEIKHLKLGLE 85 (92)
T ss_dssp ---CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555444444433332 444444444444444444554444332 2333456666666555554
No 306
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=85.61 E-value=2.2 Score=31.67 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=12.6
Q ss_pred hhhHhhhhhhhcchhhHHHHHHHHHHHH
Q 012184 375 SRFREKIDEVNSTHSELSKELSSVQGQL 402 (469)
Q Consensus 375 ~~l~~~~~~~~~~~~e~~~el~~~~~~l 402 (469)
..++++++.++.+...+++++..++.++
T Consensus 15 ~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 15 DTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 307
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=85.45 E-value=1.5 Score=24.90 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=21.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 012184 425 SSQTIENEVQILRQQKSAFEQEMERATSVQ 454 (469)
Q Consensus 425 ~~~~~e~e~~~~~q~~~~~~~~~~~~~~~q 454 (469)
.+.+||..++++.++++.++.+.++++...
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 355777788888888888888877766543
No 308
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=85.42 E-value=1.4 Score=24.98 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 012184 426 SQTIENEVQILRQQKSAFEQEMERATSVQT 455 (469)
Q Consensus 426 ~~~~e~e~~~~~q~~~~~~~~~~~~~~~q~ 455 (469)
+.+||.+++++.++...++.|..+++....
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 457788888888888888888887766543
No 309
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=85.19 E-value=7.5 Score=29.27 Aligned_cols=8 Identities=50% Similarity=0.605 Sum_probs=3.0
Q ss_pred Hhhhhhhh
Q 012184 363 LELSLTEV 370 (469)
Q Consensus 363 ~~~~~~~~ 370 (469)
++..|.+.
T Consensus 30 Lq~qLTqA 37 (121)
T 3mq7_A 30 LQQELTEA 37 (121)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 310
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=84.97 E-value=8 Score=31.10 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012184 428 TIENEVQILRQQKSAFEQEMERATSV 453 (469)
Q Consensus 428 ~~e~e~~~~~q~~~~~~~~~~~~~~~ 453 (469)
+.++|.+++.+++.++..++++.+.+
T Consensus 81 q~~~ek~~r~e~k~~l~~ql~qv~~L 106 (150)
T 4dci_A 81 QVAGKRSELEEQKRNLLQQQAQVREL 106 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45566666666666666666555443
No 311
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=84.92 E-value=30 Score=35.89 Aligned_cols=18 Identities=17% Similarity=0.038 Sum_probs=13.8
Q ss_pred cceEEEEECCCCeEEEee
Q 012184 78 SMIVRFIDLETNLCGVME 95 (469)
Q Consensus 78 ~~~~~~~d~~t~~W~~~~ 95 (469)
..+++.||+.++....+.
T Consensus 91 ~~~~~~~d~~~~~~~~l~ 108 (740)
T 4a5s_A 91 TASYDIYDLNKRQLITEE 108 (740)
T ss_dssp EEEEEEEETTTTEECCSS
T ss_pred ceEEEEEECCCCcEEEcc
Confidence 356899999999866554
No 312
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=84.89 E-value=28 Score=36.00 Aligned_cols=149 Identities=9% Similarity=0.033 Sum_probs=75.3
Q ss_pred ECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEE-cCcEEEEEecCCCCcccCcEEEEECCC
Q 012184 112 VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQT 190 (469)
Q Consensus 112 ~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~ 190 (469)
.++.||+.-. ..+.|+++++....-..+... .+..|+ .+++. .++.||+..- . ....|+++++..
T Consensus 463 ~~g~LY~tD~------~~~~I~v~d~dg~~~~~l~~~-~~~~P~---giavDp~~g~ly~td~-~---~~~~I~~~~~dG 528 (699)
T 1n7d_A 463 IHSNIYWTDS------VLGTVSVADTKGVKRKTLFRE-QGSKPR---AIVVDPVHGFMYWTDW-G---TPAKIKKGGLNG 528 (699)
T ss_dssp SSSBCEECCT------TTSCEEEEBSSSCCEEEECCC-SSCCCC---CEECCSSSSCCEECCC-S---SSCCEEBCCSSS
T ss_pred eCCcEEEEec------cCCeEEEEecCCCceEEEEeC-CCCCcc---eEEEccCCCcEEEccc-C---CCCeEEEEeCCC
Confidence 3578888521 245689999887654444321 122232 23332 2466776431 1 125688888765
Q ss_pred CceEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEc
Q 012184 191 NEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIE 268 (469)
Q Consensus 191 ~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~ 268 (469)
..-..+. ...+. ...++++- ++.||+.-.. .+.|+++|+....-..+....... ...+++.+.
T Consensus 529 ~~~~~l~-~~~l~---~PnGlavd~~~~~LY~aD~~-----~~~I~~~d~dG~~~~~~~~~~~~~---~~P~glavd--- 593 (699)
T 1n7d_A 529 VDIYSLV-TENIQ---WPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKRL---AHPFSLAVF--- 593 (699)
T ss_dssp CCCCEES-CSSCS---SCCCEEECTTTCCEEEEETT-----TTEEEEECSSSSCCEEECCCSSSC---SSCCCCEEE---
T ss_pred CCeeEEE-eCCCC---CccEEEEeccCCEEEEEecC-----CCeEEEEccCCCceEEEEecCCcC---CCceEeEEE---
Confidence 4333321 11111 12233332 4678887432 357889998754444443221111 122344433
Q ss_pred CCcEEEEEeccCCCCCceEEEEECCC
Q 012184 269 GEHHLVAFGGYNGKYNNEVFVMRLKP 294 (469)
Q Consensus 269 ~~~~l~v~GG~~~~~~~~~~~~d~~~ 294 (469)
.+.||+.-.. ...|.+++..+
T Consensus 594 -~~~lywtd~~----~~~V~~~d~~~ 614 (699)
T 1n7d_A 594 -EDKVFWTDII----NEAIFSANRLT 614 (699)
T ss_dssp -TTEEEEECST----TTCEEEEETTT
T ss_pred -CCEEEEEeCC----CCeEEEEEccC
Confidence 4678877532 33578887643
No 313
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=84.62 E-value=23 Score=32.17 Aligned_cols=144 Identities=17% Similarity=0.083 Sum_probs=75.2
Q ss_pred cceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCE-EEEEeccC-C--------------CC-----CccCcEEE
Q 012184 78 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSR-LIIFGGED-R--------------SR-----KLLNDVHF 134 (469)
Q Consensus 78 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~-lyi~GG~~-~--------------~~-----~~~~~v~~ 134 (469)
...+|.+|+.++....+... +. .....+ +++ |++..... . .+ .....+++
T Consensus 84 ~~~l~~~~~~~g~~~~l~~~---~~----~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 156 (347)
T 2gop_A 84 VSEIWVADLETLSSKKILEA---KN----IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWI 156 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE---SE----EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEE
T ss_pred cceEEEEECCCCceEEEEcC---CC----ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEE
Confidence 34599999999887777632 21 222333 444 44443110 0 00 01356999
Q ss_pred EECCCCeE-EEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCc---c-cCcEEEEECCCCceEeeeecCCCCCCCcce
Q 012184 135 LDLETMTW-DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI---F-FNDLHVLDLQTNEWSQPEIKGDLVTGRAGH 209 (469)
Q Consensus 135 ~d~~t~~W-~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~---~-~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~ 209 (469)
+|+.++.. ..+.. + .........++ +++.+...... . ...+|.+| +..+..+... ....
T Consensus 157 ~d~~~~~~~~~l~~----~---~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~------~~~~ 220 (347)
T 2gop_A 157 FDTESEEVIEEFEK----P---RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK------VSFY 220 (347)
T ss_dssp EETTTTEEEEEEEE----E---TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE------ESEE
T ss_pred EECCCCeEEeeecC----C---CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC------ccee
Confidence 99999887 66542 2 22334444466 55555433221 2 45788888 6677665421 1111
Q ss_pred EEEEECCEEEEEecCCC---CCCcceEEEEECCCCcEEEec
Q 012184 210 AGITIDENWYIVGGGDN---NNGCQETIVLNMTKLAWSILT 247 (469)
Q Consensus 210 ~~~~~~~~l~v~GG~~~---~~~~~d~~~~d~~~~~W~~~~ 247 (469)
.. .-+++.+++.+... ......++++| +..+..+.
T Consensus 221 ~~-spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~ 258 (347)
T 2gop_A 221 AV-DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL 258 (347)
T ss_dssp EE-EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS
T ss_pred eE-CCCCCEEEEEEccccCCccccceEEEEC--CCceEecc
Confidence 22 33555444444222 11245799999 55666543
No 314
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=84.58 E-value=23 Score=32.13 Aligned_cols=139 Identities=14% Similarity=-0.063 Sum_probs=71.0
Q ss_pred ceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-C-CEEEEEeccCCCCCccCcEEEEECCC---CeEEEeeeCCCCCC
Q 012184 79 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-G-SRLIIFGGEDRSRKLLNDVHFLDLET---MTWDAVEVTQTPPA 153 (469)
Q Consensus 79 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~-~~lyi~GG~~~~~~~~~~v~~~d~~t---~~W~~~~~~g~~p~ 153 (469)
..+++||+.++....+......| ..++.- + +.||+.-. ..+.|++|++.+ .....+.. .+.
T Consensus 165 g~v~~~d~~~~~~~~~~~~~~~p-----~gia~~~dg~~lyv~d~------~~~~I~~~~~~~~~~~~~~~~~~---~~g 230 (322)
T 2fp8_A 165 GRLIKYDPSTKETTLLLKELHVP-----GGAEVSADSSFVLVAEF------LSHQIVKYWLEGPKKGTAEVLVK---IPN 230 (322)
T ss_dssp EEEEEEETTTTEEEEEEEEESCC-----CEEEECTTSSEEEEEEG------GGTEEEEEESSSTTTTCEEEEEE---CSS
T ss_pred ceEEEEeCCCCEEEEeccCCccC-----cceEECCCCCEEEEEeC------CCCeEEEEECCCCcCCccceEEe---CCC
Confidence 56999999988876554211112 223332 2 35777632 245699999875 34443331 121
Q ss_pred CCCCceEEEEcCcEEEEEecCCCC-----cccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCC
Q 012184 154 PRYDHSAALHANRYLIVFGGCSHS-----IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN 228 (469)
Q Consensus 154 ~r~~~~~~~~~~~~l~v~GG~~~~-----~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~ 228 (469)
-..++...++.|||....... ...+.+.+||+....-..+......+ .....+++..++.|||....
T Consensus 231 ---P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~-~~~~~~~~~~~g~L~v~~~~---- 302 (322)
T 2fp8_A 231 ---PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFA-GEHFEQIQEHDGLLYIGTLF---- 302 (322)
T ss_dssp ---EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTT-TSCCCEEEEETTEEEEECSS----
T ss_pred ---CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCc-cccceEEEEeCCEEEEeecC----
Confidence 233444446678886532110 11356899998654444443211111 12222344457888876432
Q ss_pred CcceEEEEECCC
Q 012184 229 GCQETIVLNMTK 240 (469)
Q Consensus 229 ~~~d~~~~d~~~ 240 (469)
.+.+.+|++..
T Consensus 303 -~~~i~~~~~~~ 313 (322)
T 2fp8_A 303 -HGSVGILVYDK 313 (322)
T ss_dssp -CSEEEEEEC--
T ss_pred -CCceEEEeccc
Confidence 24577887654
No 315
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=84.49 E-value=1.6 Score=24.75 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=21.1
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012184 425 SSQTIENEVQILRQQKSAFEQEMERATSV 453 (469)
Q Consensus 425 ~~~~~e~e~~~~~q~~~~~~~~~~~~~~~ 453 (469)
.+.+||..++++.+++..++.|..+++..
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 35677778888888888888887766554
No 316
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=84.33 E-value=18 Score=30.62 Aligned_cols=149 Identities=11% Similarity=0.089 Sum_probs=75.4
Q ss_pred EEEEECCEEEEEeccCCCCCccCcEEEEECCCC--eEEEeeeC---CCCCCCCCCceEEEE-cCcEEEEEecCCCCcccC
Q 012184 108 SVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM--TWDAVEVT---QTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFN 181 (469)
Q Consensus 108 ~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~--~W~~~~~~---g~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~ 181 (469)
+++.+++++|+|=|. .+|+++.... ...-.... ..+|... -++... .++++|+|-| +
T Consensus 11 Ai~~~~g~~yfFkg~--------~~Wr~~~~~~~~~~~p~~Is~~w~glP~~I--DAa~~~~~~~~~yfFkG-------~ 73 (195)
T 1itv_A 11 AIAEIGNQLYLFKDG--------KYWRFSEGRGSRPQGPFLIADKWPALPRKL--DSVFEEPLSKKLFFFSG-------R 73 (195)
T ss_dssp EEEEETTEEEEEETT--------EEEEECCSSSCCCEEEEEHHHHCTTSCSSC--SEEEECTTTCCEEEEET-------T
T ss_pred EEEEeCCEEEEEECC--------EEEEEECCccccCCCcEEhhhccCCCCCCc--cEEEEECCCCeEEEEeC-------C
Confidence 345578999999553 3677765442 22111111 1334321 223222 2577999988 5
Q ss_pred cEEEEECCCCceEeeeecCC--CCC--CCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEE-----Eec-cCCC
Q 012184 182 DLHVLDLQTNEWSQPEIKGD--LVT--GRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWS-----ILT-SVKG 251 (469)
Q Consensus 182 ~i~~~d~~~~~W~~~~~~~~--~p~--~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~-----~~~-~~~~ 251 (469)
..|+|+..+.. .+..... +|. .....+....++++|+|-| +..|+||..+..-. .+. .-++
T Consensus 74 ~yw~~~~~~~~--~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg-------~~ywr~d~~~~~~~~gyPr~i~~~w~G 144 (195)
T 1itv_A 74 QVWVYTGASVL--GPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-------RRLWRFDVKAQMVDPRSASEVDRMFPG 144 (195)
T ss_dssp EEEEEETTEEE--EEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-------TEEEEEETTTTEECGGGCEEHHHHSTT
T ss_pred EEEEEcCCccC--CCEEeeecccCCCccceeEEEEcCCCeEEEEeC-------CEEEEEeCCcccccCCCccChhhcCCC
Confidence 68888854321 1221111 222 1333333323578999977 37899998765321 111 1111
Q ss_pred CCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184 252 RNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 252 ~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~ 295 (469)
.| ..-.++.. . .+.+|.|-|. ..|.||....
T Consensus 145 -vp--~~idaa~~--~--~g~~Yffkg~------~y~~~~~~~~ 175 (195)
T 1itv_A 145 -VP--LDTHDVFQ--F--REKAYFCQDR------FYWRVSSRSE 175 (195)
T ss_dssp -SC--SSCSEEEE--E--TTEEEEEETT------EEEEEECCTT
T ss_pred -CC--CCCCEEEE--e--CCeEEEEeCC------EEEEEECCcc
Confidence 11 11122222 2 3678888762 5788887654
No 317
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=84.27 E-value=26 Score=32.45 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=19.0
Q ss_pred ceEEEEcCc-EEEEEecCCCCcccCcEEEEECC-CCceEee
Q 012184 158 HSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQ-TNEWSQP 196 (469)
Q Consensus 158 ~~~~~~~~~-~l~v~GG~~~~~~~~~i~~~d~~-~~~W~~~ 196 (469)
+.++...++ ++|+.. .. .+.+++||+. +++...+
T Consensus 148 ~~~~~spdG~~l~~~~-~~----~~~v~~~~~~~~g~~~~~ 183 (365)
T 1jof_A 148 HGMVFDPTETYLYSAD-LT----ANKLWTHRKLASGEVELV 183 (365)
T ss_dssp EEEEECTTSSEEEEEE-TT----TTEEEEEEECTTSCEEEE
T ss_pred eEEEECCCCCEEEEEc-CC----CCEEEEEEECCCCCEEEe
Confidence 344443344 565542 21 2579999987 6766543
No 318
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=84.13 E-value=1.9 Score=27.92 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 012184 395 LSSVQGQLVAERSRCFKLEAQIAELQKMLE 424 (469)
Q Consensus 395 l~~~~~~l~~~~~~~~~~~~~~~e~~~~l~ 424 (469)
...++.+++.++.++..|..+++|+..++.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444445555555555555555555443
No 319
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=84.03 E-value=8.6 Score=29.21 Aligned_cols=17 Identities=12% Similarity=0.282 Sum_probs=6.6
Q ss_pred chhhHHHHHHHHHHHHH
Q 012184 387 THSELSKELSSVQGQLV 403 (469)
Q Consensus 387 ~~~e~~~el~~~~~~l~ 403 (469)
...+++.++.+++..+.
T Consensus 25 ~~~~l~~~i~~l~~~l~ 41 (112)
T 1l8d_A 25 RIGELKNKIGDLKTAIE 41 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444433333
No 320
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=83.98 E-value=38 Score=34.09 Aligned_cols=180 Identities=8% Similarity=-0.041 Sum_probs=89.4
Q ss_pred EEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCC---CCCC
Q 012184 81 VRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP---PAPR 155 (469)
Q Consensus 81 ~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~---p~~r 155 (469)
+..||..+.+....- ......-.++.+ ++.+++.||.+. .+.++|+.++.....-..... ....
T Consensus 172 v~lwd~~~~~~~~~l-----~~H~~~V~~v~fspdg~~las~s~D~------~i~lwd~~~g~~~~~~~~~~~~~~~h~~ 240 (611)
T 1nr0_A 172 VAIFEGPPFKFKSTF-----GEHTKFVHSVRYNPDGSLFASTGGDG------TIVLYNGVDGTKTGVFEDDSLKNVAHSG 240 (611)
T ss_dssp EEEEETTTBEEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEECBCTTSSSCSSSS
T ss_pred EEEEECCCCeEeeee-----ccccCceEEEEECCCCCEEEEEECCC------cEEEEECCCCcEeeeeccccccccccCC
Confidence 777777665543221 111112223333 456777777543 388899887765433211100 0011
Q ss_pred CCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEE
Q 012184 156 YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIV 235 (469)
Q Consensus 156 ~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~ 235 (469)
.-.+++...++..++.|+.+ +.+.++|+.+.+....-..+. ........+..++..++.++.++ .+..
T Consensus 241 ~V~~v~~spdg~~l~s~s~D-----~~v~lWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~s~s~d~-----~i~~ 308 (611)
T 1nr0_A 241 SVFGLTWSPDGTKIASASAD-----KTIKIWNVATLKVEKTIPVGT--RIEDQQLGIIWTKQALVSISANG-----FINF 308 (611)
T ss_dssp CEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEECCS--SGGGCEEEEEECSSCEEEEETTC-----CEEE
T ss_pred CEEEEEECCCCCEEEEEeCC-----CeEEEEeCCCCceeeeecCCC--CccceeEEEEEcCCEEEEEeCCC-----cEEE
Confidence 11122333356677777754 458899998877654221111 11111222333566666666432 4667
Q ss_pred EECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184 236 LNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 236 ~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~ 295 (469)
+|+....-.. .+.+.. ..+..+...+++..++.|+.++ .+.++|+.+.
T Consensus 309 ~~~~~~~~~~--~~~gh~------~~v~~l~~spdg~~l~s~s~D~----~v~~Wd~~~~ 356 (611)
T 1nr0_A 309 VNPELGSIDQ--VRYGHN------KAITALSSSADGKTLFSADAEG----HINSWDISTG 356 (611)
T ss_dssp EETTTTEEEE--EECCCS------SCEEEEEECTTSSEEEEEETTS----CEEEEETTTC
T ss_pred EeCCCCCcce--EEcCCC------CCEEEEEEeCCCCEEEEEeCCC----cEEEEECCCC
Confidence 7877654222 111111 1233444555666777777665 3677777654
No 321
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=83.80 E-value=30 Score=32.74 Aligned_cols=109 Identities=13% Similarity=0.045 Sum_probs=57.2
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
++.+++.|+.+ ..+..||+.+..-...- ..+.......++.+ ++.+++.|+.+. .+.+||+.+
T Consensus 181 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~~l~s~~~dg------~i~iwd~~~ 245 (437)
T 3gre_A 181 EKSLLVALTNL------SRVIIFDIRTLERLQII---ENSPRHGAVSSICIDEECCVLILGTTRG------IIDIWDIRF 245 (437)
T ss_dssp SCEEEEEEETT------SEEEEEETTTCCEEEEE---ECCGGGCCEEEEEECTTSCEEEEEETTS------CEEEEETTT
T ss_pred CCCEEEEEeCC------CeEEEEeCCCCeeeEEE---ccCCCCCceEEEEECCCCCEEEEEcCCC------eEEEEEcCC
Confidence 46677777643 24899999887643332 11111222333334 456777776543 488999988
Q ss_pred CeEEEeeeCCCCCCCCCCceEEE---E-cCcEEEEEecCCCCcccCcEEEEECCCCce
Q 012184 140 MTWDAVEVTQTPPAPRYDHSAAL---H-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEW 193 (469)
Q Consensus 140 ~~W~~~~~~g~~p~~r~~~~~~~---~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W 193 (469)
......-.. +....-.+++. + .++.+++.|+.+ ..+.+||+.+..-
T Consensus 246 ~~~~~~~~~---~~~~~v~~~~~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~ 295 (437)
T 3gre_A 246 NVLIRSWSF---GDHAPITHVEVCQFYGKNSVIVVGGSSK-----TFLTIWNFVKGHC 295 (437)
T ss_dssp TEEEEEEBC---TTCEEEEEEEECTTTCTTEEEEEEESTT-----EEEEEEETTTTEE
T ss_pred ccEEEEEec---CCCCceEEEEeccccCCCccEEEEEcCC-----CcEEEEEcCCCcE
Confidence 765432210 11100111111 1 145456665543 3588889877653
No 322
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=83.69 E-value=8.2 Score=29.51 Aligned_cols=20 Identities=10% Similarity=0.300 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 012184 428 TIENEVQILRQQKSAFEQEM 447 (469)
Q Consensus 428 ~~e~e~~~~~q~~~~~~~~~ 447 (469)
.++++++.++.++..++..+
T Consensus 88 ~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 88 ALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 323
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=83.55 E-value=18 Score=35.00 Aligned_cols=71 Identities=10% Similarity=0.185 Sum_probs=30.9
Q ss_pred HhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 012184 378 REKIDEVNSTHSELSKELSSVQGQLVAERSRCFK-LEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEME 448 (469)
Q Consensus 378 ~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~-~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~ 448 (469)
+..+++.+..+.+++.|.+.+++.....+..... +.+-.++|.+=.+..-+.+.++...++.+.+...++.
T Consensus 33 e~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~la 104 (497)
T 3iox_A 33 EAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPVKLKAYEDEQTSIKAALA 104 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555444333211 1111112211122222444555556666665555554
No 324
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=83.17 E-value=27 Score=31.81 Aligned_cols=157 Identities=12% Similarity=0.058 Sum_probs=83.1
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCC----CCCCc-ceEEEEE-C-CEEEEEeccCCCCCccCcEEE
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKV----PVARG-GHSVTLV-G-SRLIIFGGEDRSRKLLNDVHF 134 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~----p~~r~-~~~~~~~-~-~~lyi~GG~~~~~~~~~~v~~ 134 (469)
++.||+..++. ...+.+||+....-..+...|.. +.... -++++.- + +.||+.... .+.|.+
T Consensus 154 ~g~lyv~d~~~-----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~------~~~I~~ 222 (329)
T 3fvz_A 154 TGAVFVSDGYC-----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE------NGRIQC 222 (329)
T ss_dssp TCCEEEEECSS-----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT------TTEEEE
T ss_pred CCeEEEEeCCC-----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC------CCEEEE
Confidence 68899997532 23489999654444444332221 11111 2333333 3 789987532 456999
Q ss_pred EECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCC--CcccCcEEEEECCCCceEeeeecCCCCC-CCcceEE
Q 012184 135 LDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH--SIFFNDLHVLDLQTNEWSQPEIKGDLVT-GRAGHAG 211 (469)
Q Consensus 135 ~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~--~~~~~~i~~~d~~~~~W~~~~~~~~~p~-~r~~~~~ 211 (469)
||+.+++....-... .....-++++.. .+.+|+..|... ....+.+.++|+.+++....- +..+. ....+.+
T Consensus 223 ~~~~~G~~~~~~~~~--~~~~~~~~~~~~-pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~--~~~~~~~~~p~~i 297 (329)
T 3fvz_A 223 FKTDTKEFVREIKHA--SFGRNVFAISYI-PGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF--KPVRKHFDMPHDI 297 (329)
T ss_dssp EETTTCCEEEEECCT--TTTTCEEEEEEE-TTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE--CCSSSCCSSEEEE
T ss_pred EECCCCcEEEEEecc--ccCCCcceeeec-CCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE--cCCCCccCCeeEE
Confidence 999877765433111 111222233333 366777776422 223457999998888765432 11111 1222333
Q ss_pred EEE-CCEEEEEecCCCCCCcceEEEEECC
Q 012184 212 ITI-DENWYIVGGGDNNNGCQETIVLNMT 239 (469)
Q Consensus 212 ~~~-~~~l~v~GG~~~~~~~~d~~~~d~~ 239 (469)
+.. ++.+||.... .+.+++|++.
T Consensus 298 a~~~dG~lyvad~~-----~~~I~~~~~~ 321 (329)
T 3fvz_A 298 VASEDGTVYIGDAH-----TNTVWKFTLT 321 (329)
T ss_dssp EECTTSEEEEEESS-----SCCEEEEEEE
T ss_pred EECCCCCEEEEECC-----CCEEEEEeCC
Confidence 333 4578887653 2367777764
No 325
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=83.01 E-value=2.7 Score=26.26 Aligned_cols=42 Identities=12% Similarity=0.286 Sum_probs=26.7
Q ss_pred hhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 012184 375 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI 416 (469)
Q Consensus 375 ~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~ 416 (469)
.+|-++++.++.++.-+++|++..-.++.+++.....++.-+
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevl 47 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVL 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHH
Confidence 345556666666677777777777777766666665555444
No 326
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=82.96 E-value=7.8 Score=34.67 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc
Q 012184 428 TIENEVQILRQQKSAFEQEMERATSVQTQGSGG 460 (469)
Q Consensus 428 ~~e~e~~~~~q~~~~~~~~~~~~~~~q~q~~~~ 460 (469)
..|+++...+.++...+++++++-++..|-.|+
T Consensus 76 e~Ere~~~~Rd~~a~~k~~Le~~ierLs~pgg~ 108 (302)
T 3ibp_A 76 EREREAIVERDEVGARKNAVDEEIERLSQPGGS 108 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 444556666666666677776665555554443
No 327
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=82.86 E-value=13 Score=28.05 Aligned_cols=51 Identities=8% Similarity=0.104 Sum_probs=26.6
Q ss_pred hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012184 373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML 423 (469)
Q Consensus 373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l 423 (469)
....|+.++..+.....++...+.++++.+--+.....-....+++++.++
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~ 86 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRL 86 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHH
Confidence 445556666555555555555555555554444444444444555555554
No 328
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=82.83 E-value=0.65 Score=46.99 Aligned_cols=7 Identities=14% Similarity=0.496 Sum_probs=3.4
Q ss_pred HHHHHHh
Q 012184 353 IDAIKED 359 (469)
Q Consensus 353 ~~~l~~~ 359 (469)
+++++.+
T Consensus 302 ~qqm~~~ 308 (575)
T 2i1j_A 302 VQQMKAQ 308 (575)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 329
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=82.82 E-value=8.8 Score=37.61 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 012184 431 NEVQILRQQKSAFEQEMERA 450 (469)
Q Consensus 431 ~e~~~~~q~~~~~~~~~~~~ 450 (469)
+.++++.-+...++++++++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~ 462 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDA 462 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555433
No 330
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.78 E-value=12 Score=36.79 Aligned_cols=21 Identities=0% Similarity=-0.069 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 012184 428 TIENEVQILRQQKSAFEQEME 448 (469)
Q Consensus 428 ~~e~e~~~~~q~~~~~~~~~~ 448 (469)
.++++++++..+++...+.+.
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 453 RLKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhHhcccHHH
Confidence 455666666665555444443
No 331
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=82.71 E-value=31 Score=32.07 Aligned_cols=150 Identities=11% Similarity=0.053 Sum_probs=74.1
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEE--ECCEEEEEeccCCCCCccCcEEEEECCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL--VGSRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~--~~~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
++++++.|+. +.+..++..++......+. .........+. -++..++.++.+... ...++.+|...
T Consensus 187 dg~~l~s~s~-------~~~~~~~~~~~~~~~~~~~---~~~~~~v~~v~fspdg~~l~~~s~d~~~--~~~i~~~~~~~ 254 (365)
T 4h5i_A 187 DGKVVAYITG-------SSLEVISTVTGSCIARKTD---FDKNWSLSKINFIADDTVLIAASLKKGK--GIVLTKISIKS 254 (365)
T ss_dssp TSSEEEEECS-------SCEEEEETTTCCEEEEECC---CCTTEEEEEEEEEETTEEEEEEEESSSC--CEEEEEEEEET
T ss_pred CCceEEeccc-------eeEEEEEeccCcceeeeec---CCCCCCEEEEEEcCCCCEEEEEecCCcc--eeEEeeccccc
Confidence 5566666542 1277788877765544321 11111122222 367777777655432 22466677766
Q ss_pred CeEEEeeeCCCCCCC-CCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcc-eEEEEE--C
Q 012184 140 MTWDAVEVTQTPPAP-RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAG-HAGITI--D 215 (469)
Q Consensus 140 ~~W~~~~~~g~~p~~-r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~-~~~~~~--~ 215 (469)
......... ..... ..-.+++.-.++.+++.|+.+ +.|.+||+.+.+-.... ..+... -..+.+ +
T Consensus 255 ~~~~~~~~~-~~~~~~~~V~~~~~Spdg~~lasgs~D-----~~V~iwd~~~~~~~~~~-----~~gH~~~V~~v~fSpd 323 (365)
T 4h5i_A 255 GNTSVLRSK-QVTNRFKGITSMDVDMKGELAVLASND-----NSIALVKLKDLSMSKIF-----KQAHSFAITEVTISPD 323 (365)
T ss_dssp TEEEEEEEE-EEESSCSCEEEEEECTTSCEEEEEETT-----SCEEEEETTTTEEEEEE-----TTSSSSCEEEEEECTT
T ss_pred ceecceeee-eecCCCCCeEeEEECCCCCceEEEcCC-----CEEEEEECCCCcEEEEe-----cCcccCCEEEEEECCC
Confidence 665433211 00111 111223333467788888765 45889998876533210 111111 122233 5
Q ss_pred CEEEEEecCCCCCCcceEEEEECC
Q 012184 216 ENWYIVGGGDNNNGCQETIVLNMT 239 (469)
Q Consensus 216 ~~l~v~GG~~~~~~~~d~~~~d~~ 239 (469)
+.+++.|+.++ .+-++|+.
T Consensus 324 g~~laS~S~D~-----tvrvw~ip 342 (365)
T 4h5i_A 324 STYVASVSAAN-----TIHIIKLP 342 (365)
T ss_dssp SCEEEEEETTS-----EEEEEECC
T ss_pred CCEEEEEeCCC-----eEEEEEcC
Confidence 67777777533 35566653
No 332
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=82.59 E-value=37 Score=32.95 Aligned_cols=178 Identities=11% Similarity=-0.071 Sum_probs=80.2
Q ss_pred EECCEEEEEccccCCCCCcceEEEEECCCC----eEEEeecCCCC--CCCC-cceEEEEECCEEEEEeccCCCCCccCcE
Q 012184 60 KWGTKLLILGGHYKKSSDSMIVRFIDLETN----LCGVMETSGKV--PVAR-GGHSVTLVGSRLIIFGGEDRSRKLLNDV 132 (469)
Q Consensus 60 ~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~----~W~~~~~~g~~--p~~r-~~~~~~~~~~~lyi~GG~~~~~~~~~~v 132 (469)
.-+.+||+-|... +.++++|+.++ +-.+....... +... .-|++....+.|||-.-.+..+...+.+
T Consensus 93 ~~r~~l~v~~l~s------~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 93 IERRFLIVPGLRS------SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGI 166 (462)
T ss_dssp CCSCEEEEEBTTT------CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEE
T ss_pred ccCCEEEEccCCC------CeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeE
Confidence 3366777776542 44999999877 33332200000 0011 1233333333366632111122346789
Q ss_pred EEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEec----------CCCC----cccCcEEEEECCCCceEeeee
Q 012184 133 HFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG----------CSHS----IFFNDLHVLDLQTNEWSQPEI 198 (469)
Q Consensus 133 ~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG----------~~~~----~~~~~i~~~d~~~~~W~~~~~ 198 (469)
.++|..|.+-..--..+..|.. .++.+-.-.++.+++.-- .... ...+.|++||+.+.+-.. .
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~-~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--t 243 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQY-LAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--S 243 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCC-CCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--E
T ss_pred EEEECCCCeEEEEEccCCCCcc-ccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--E
Confidence 9999998775443322222211 122222222322333332 1111 346889999998764222 1
Q ss_pred cCCCCCCCcc--eEEEEE---CCEEEEEecCCCCCCcceEEEEECCCCcEEEec
Q 012184 199 KGDLVTGRAG--HAGITI---DENWYIVGGGDNNNGCQETIVLNMTKLAWSILT 247 (469)
Q Consensus 199 ~~~~p~~r~~--~~~~~~---~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~ 247 (469)
. +....-.. |....+ +..+||..-.+.....+.+++|......|....
T Consensus 244 I-~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~ 296 (462)
T 2ece_A 244 L-TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK 296 (462)
T ss_dssp E-ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE
T ss_pred E-ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE
Confidence 1 11111011 111112 245666654322333456665555557776543
No 333
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=82.59 E-value=5.4 Score=29.01 Aligned_cols=21 Identities=24% Similarity=0.148 Sum_probs=9.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHH
Q 012184 403 VAERSRCFKLEAQIAELQKML 423 (469)
Q Consensus 403 ~~~~~~~~~~~~~~~e~~~~l 423 (469)
..+..++.+++.++.+++.++
T Consensus 25 e~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 25 EQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555554
No 334
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=82.58 E-value=1.7 Score=40.06 Aligned_cols=42 Identities=5% Similarity=0.159 Sum_probs=19.5
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184 381 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM 422 (469)
Q Consensus 381 ~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~ 422 (469)
+..++..+...+.+++.++..+...+.++++|++++.+++.+
T Consensus 14 ~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 14 VRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444455555554455555555554444443
No 335
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=82.28 E-value=7.2 Score=27.33 Aligned_cols=16 Identities=31% Similarity=0.383 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 012184 432 EVQILRQQKSAFEQEM 447 (469)
Q Consensus 432 e~~~~~q~~~~~~~~~ 447 (469)
|+..++++++..+.++
T Consensus 55 El~~Lq~qLe~kd~ei 70 (81)
T 3qh9_A 55 EVAQLQEQVALKDAEI 70 (81)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHH
Confidence 3333334443333333
No 336
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=82.24 E-value=1.9 Score=24.83 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 012184 426 SQTIENEVQILRQQKSAFEQEMERATS 452 (469)
Q Consensus 426 ~~~~e~e~~~~~q~~~~~~~~~~~~~~ 452 (469)
+.+||.+++++..++..++.+..+++.
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 445666666666666666666655543
No 337
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=82.12 E-value=32 Score=31.85 Aligned_cols=159 Identities=13% Similarity=0.055 Sum_probs=77.7
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEE-E--CCEEEEEeccCCCCCccCcEEEEECC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-V--GSRLIIFGGEDRSRKLLNDVHFLDLE 138 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~-~--~~~lyi~GG~~~~~~~~~~v~~~d~~ 138 (469)
.+.+|+.+.... ..++++++....-.......+.+..+.+....+ . ++.|++..+ ...++.||+.
T Consensus 147 ~GnaYVt~s~~~-----~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-------~g~L~~fD~~ 214 (334)
T 2p9w_A 147 DGNSYVAFALGM-----PAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-------PRALTAFDVS 214 (334)
T ss_dssp TSCEEEEEEESS-----CEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-------SSSEEEEECS
T ss_pred CCCEEEeCCCCC-----CeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-------CCeEEEEcCC
Confidence 688999765321 349999998653222211112233455544444 4 335666644 2348999988
Q ss_pred CCeEEEeeeC--CCCCCCCCCceE--EEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCC---CCcceEE
Q 012184 139 TMTWDAVEVT--QTPPAPRYDHSA--ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVT---GRAGHAG 211 (469)
Q Consensus 139 t~~W~~~~~~--g~~p~~r~~~~~--~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~---~r~~~~~ 211 (469)
+.....++.. |.. ..-.+... ..--+++++++.-. .+....+-...+ |......+..|. ++...++
T Consensus 215 ~pv~~~v~~~~~G~~-~~~~~~dgilp~~~~G~vllV~~~-----~~~~~~l~S~Dg-W~sa~~~g~~~~~~~~~g~tt~ 287 (334)
T 2p9w_A 215 KPYAWPEPVKINGDF-GTLSGTEKIVTVPVGNESVLVGAR-----APYAISFRSWDN-WKSANIKKTKRSELQNSGFTAV 287 (334)
T ss_dssp SSSCCCEECEESSCC-CCCTTEEEEEEEEETTEEEEEEEE-----TTEEEEEECSST-TSEEEEEEEECGGGGSSCEEEE
T ss_pred CCcceeecccccCCc-ccccCcccccccccCCEEEEEEcC-----CCCEEEEECCCC-cceeEEeeeecCccccCceeEE
Confidence 5432122221 221 01111122 22125556444322 134455554444 988665544333 3433344
Q ss_pred EE----ECCEEEEEecCCCC---CCcceEEEEECC
Q 012184 212 IT----IDENWYIVGGGDNN---NGCQETIVLNMT 239 (469)
Q Consensus 212 ~~----~~~~l~v~GG~~~~---~~~~d~~~~d~~ 239 (469)
+. .++++|++.++-.. +....+-++|+.
T Consensus 288 t~~~~~~~~~iYvv~~~f~~~~~g~r~~f~~~di~ 322 (334)
T 2p9w_A 288 ADYYQGSEQGLYAVSAFFDNGAHGGRSDYPLYKLD 322 (334)
T ss_dssp EEEEETTEEEEEEEECCGGGTTTSCCCCEEEEECC
T ss_pred EEeccccCCeEEEEeeecCCcccCCcceeechhhh
Confidence 44 56889999875321 223445555554
No 338
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=81.96 E-value=2.3 Score=24.18 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=21.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012184 425 SSQTIENEVQILRQQKSAFEQEMERATSV 453 (469)
Q Consensus 425 ~~~~~e~e~~~~~q~~~~~~~~~~~~~~~ 453 (469)
.+.++|..++++.+++..++.|+.+++..
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 45677888888888888888888766554
No 339
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=81.88 E-value=2.5 Score=24.01 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 012184 426 SQTIENEVQILRQQKSAFEQEMERATSVQ 454 (469)
Q Consensus 426 ~~~~e~e~~~~~q~~~~~~~~~~~~~~~q 454 (469)
+.++|.+.+++.+++..++.|+.+++...
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45778888888888888888887776654
No 340
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=81.79 E-value=2.3 Score=24.45 Aligned_cols=27 Identities=11% Similarity=0.253 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 012184 426 SQTIENEVQILRQQKSAFEQEMERATS 452 (469)
Q Consensus 426 ~~~~e~e~~~~~q~~~~~~~~~~~~~~ 452 (469)
+.+||..++++..++..++.+..+++.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456666666666666666666665544
No 341
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=81.75 E-value=38 Score=32.90 Aligned_cols=132 Identities=9% Similarity=-0.019 Sum_probs=61.7
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEE-ECCEEEEEe----------ccCCCC---C
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFG----------GEDRSR---K 127 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyi~G----------G~~~~~---~ 127 (469)
++ |||..--+..+.....+.++|..|+.=..--..+..|. ..+|..-. -++++++.- |+.... .
T Consensus 148 dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~-~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~ 225 (462)
T 2ece_A 148 DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQ-YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDR 225 (462)
T ss_dssp SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTC-CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHH
T ss_pred Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCc-cccceEEECCCCCEEEEccCcCccccccccchhhhhhc
Confidence 45 77753222223345679999999887444332222222 12222221 233333333 222211 3
Q ss_pred ccCcEEEEECCCCeEEEeeeCCCC-CCCCCCceEEEEc--CcEEEEEecCCCCcccCcEEEEECCCCceEeee
Q 012184 128 LLNDVHFLDLETMTWDAVEVTQTP-PAPRYDHSAALHA--NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPE 197 (469)
Q Consensus 128 ~~~~v~~~d~~t~~W~~~~~~g~~-p~~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~ 197 (469)
+.+.|.+||+.+++-..--..|.. ..|| +....++ ..++|+..-.+.....+.+++|....+.|....
T Consensus 226 ~~d~V~v~D~~~~k~~~tI~vg~~g~~P~--~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~ 296 (462)
T 2ece_A 226 YGNRIHFWDLRKRKRIHSLTLGEENRMAL--ELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK 296 (462)
T ss_dssp SCCEEEEEETTTTEEEEEEESCTTEEEEE--EEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE
T ss_pred cCCEEEEEECCCCcEeeEEecCCCCCccc--eeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE
Confidence 578899999998743322111100 0111 1111122 346777654222223456666655567787654
No 342
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=81.72 E-value=10 Score=31.39 Aligned_cols=45 Identities=7% Similarity=0.019 Sum_probs=19.2
Q ss_pred hhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHH
Q 012184 366 SLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCF 410 (469)
Q Consensus 366 ~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~ 410 (469)
.+.....-++.|..++..+..++.....|++.++.+++.++.+..
T Consensus 14 ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 14 QIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334444444445444444444444555555555555555444443
No 343
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=81.70 E-value=3.7 Score=23.58 Aligned_cols=29 Identities=10% Similarity=0.279 Sum_probs=16.9
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 012184 423 LESSQTIENEVQILRQQKSAFEQEMERAT 451 (469)
Q Consensus 423 l~~~~~~e~e~~~~~q~~~~~~~~~~~~~ 451 (469)
|+.-++|.+++++.+.++.++.++.+++.
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 44445566666666666666666655443
No 344
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=81.57 E-value=14 Score=27.34 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012184 431 NEVQILRQQKSAFEQEM 447 (469)
Q Consensus 431 ~e~~~~~q~~~~~~~~~ 447 (469)
+....++.++..+..++
T Consensus 65 r~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 65 HAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 345
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=81.53 E-value=6.1 Score=27.74 Aligned_cols=11 Identities=27% Similarity=0.265 Sum_probs=4.2
Q ss_pred HHHHHHHhhhH
Q 012184 398 VQGQLVAERSR 408 (469)
Q Consensus 398 ~~~~l~~~~~~ 408 (469)
.+.+++.++.-
T Consensus 23 ~qaEl~sLrrT 33 (78)
T 3iv1_A 23 AQAELNALKRT 33 (78)
T ss_dssp HHHHHHHHHHH
T ss_pred HhHHHHHHHHH
Confidence 33334433333
No 346
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=81.52 E-value=37 Score=32.27 Aligned_cols=232 Identities=9% Similarity=-0.048 Sum_probs=111.3
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCe-EEEe
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL-CGVM 94 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~-W~~~ 94 (469)
.+.++|+.++.-..+.... ..++ .+....++.||+......+ .++.||+.+.. ...+
T Consensus 153 ~I~~id~~~g~~~~~~~~~---------------~~~~--ia~~~~g~~l~~~d~~~~~-----~I~~~d~~~~~~~~~~ 210 (409)
T 3hrp_A 153 RVRLISVDDNKVTTVHPGF---------------KGGK--PAVTKDKQRVYSIGWEGTH-----TVYVYMKASGWAPTRI 210 (409)
T ss_dssp EEEEEETTTTEEEEEEETC---------------CBCB--CEECTTSSEEEEEBSSTTC-----EEEEEEGGGTTCEEEE
T ss_pred cEEEEECCCCEEEEeeccC---------------CCCc--eeEecCCCcEEEEecCCCc-----eEEEEEcCCCceeEEe
Confidence 5777787776665554432 1111 1211224556666432211 59999987553 2333
Q ss_pred ecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCC-c-eEEEEc-CcEEE
Q 012184 95 ETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD-H-SAALHA-NRYLI 169 (469)
Q Consensus 95 ~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~-~-~~~~~~-~~~l~ 169 (469)
..... +....-+++++. ++.||+... ...+++||+.+.....+...+........ + .++... ++.||
T Consensus 211 g~~~~-~~~~~p~~iav~p~~g~lyv~d~-------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly 282 (409)
T 3hrp_A 211 GQLGS-TFSGKIGAVALDETEEWLYFVDS-------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFY 282 (409)
T ss_dssp EECCT-TSCSCCCBCEECTTSSEEEEECT-------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred eeccc-hhcCCcEEEEEeCCCCeEEEEEC-------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence 21111 011112233333 578888321 33699999998876555322211112222 2 455554 57899
Q ss_pred EEecCCCCcccCcEEEEECCCCceEeeeecCCCCC--------C--CcceEEEEE-CCEEEEEecCCCCCCcceEEEEEC
Q 012184 170 VFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVT--------G--RAGHAGITI-DENWYIVGGGDNNNGCQETIVLNM 238 (469)
Q Consensus 170 v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~--------~--r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~ 238 (469)
+.... .+.|++|++... ...+...+..+. . .....++.. ++.||+.-.. ..+.+.++|+
T Consensus 283 v~d~~-----~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~----~~~~I~~~~~ 352 (409)
T 3hrp_A 283 MSDQN-----LSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGF----KGYCLRKLDI 352 (409)
T ss_dssp EEETT-----TTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETT----TTCEEEEEET
T ss_pred EEeCC-----CCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCC----CCCEEEEEEC
Confidence 87532 357999988654 222221110000 0 112233333 4568887430 1246889997
Q ss_pred CCCcEEEeccCCCCC-------CCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEEC
Q 012184 239 TKLAWSILTSVKGRN-------PLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRL 292 (469)
Q Consensus 239 ~~~~W~~~~~~~~~~-------p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~ 292 (469)
.+.....+...+... ...+. ..-..+++++++.|||....+. .+.++++
T Consensus 353 ~~G~v~~~~g~~~~~g~~~g~~~~~~~-~~P~giavd~~g~lyVad~~n~----~Ir~i~~ 408 (409)
T 3hrp_A 353 LDGYVSTVAGQVDVASQIDGTPLEATF-NYPYDICYDGEGGYWIAEAWGK----AIRKYAV 408 (409)
T ss_dssp TTTEEEEEEECTTCBSCCCBSTTTCCB-SSEEEEEECSSSEEEEEESTTC----EEEEEEE
T ss_pred CCCEEEEEeCCCCCCCcCCCChhceEe-CCceEEEEcCCCCEEEEECCCC----eEEEEEe
Confidence 676655543221100 00111 1233445555678888764332 3555543
No 347
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=81.23 E-value=32 Score=31.24 Aligned_cols=141 Identities=11% Similarity=0.018 Sum_probs=69.1
Q ss_pred cceEEEEECCCCeE-EEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCC--c-cCcEEEEECCCCeEEEeeeCCCCCC
Q 012184 78 SMIVRFIDLETNLC-GVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRK--L-LNDVHFLDLETMTWDAVEVTQTPPA 153 (469)
Q Consensus 78 ~~~~~~~d~~t~~W-~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~--~-~~~v~~~d~~t~~W~~~~~~g~~p~ 153 (469)
...++.+|+.++.. ..+. . + .....+...+.+++.+....... . ...++.+| ++.+..+...
T Consensus 151 ~~~l~~~d~~~~~~~~~l~---~-~---~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~----- 216 (347)
T 2gop_A 151 KTTFWIFDTESEEVIEEFE---K-P---RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK----- 216 (347)
T ss_dssp EEEEEEEETTTTEEEEEEE---E-E---TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-----
T ss_pred cceEEEEECCCCeEEeeec---C-C---CcccccCCCCeEEEEEecccccccccccccEEEeC--CCceEEeccC-----
Confidence 35699999999987 6665 2 2 22233333444555554332111 2 45788888 7777776531
Q ss_pred CCCCceEEEEcCcEEEEEecCCC--CcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcc
Q 012184 154 PRYDHSAALHANRYLIVFGGCSH--SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQ 231 (469)
Q Consensus 154 ~r~~~~~~~~~~~~l~v~GG~~~--~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~ 231 (469)
.......-++++|++.+.... ......++++| ++.+..+.. . ............+.+|+.+..++ ..
T Consensus 217 --~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~--~--~~~~~~~~~~~sdg~~~~~~~~~---~~ 285 (347)
T 2gop_A 217 --VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD--E--VDRGVGQAKIKDGKVYFTLFEEG---SV 285 (347)
T ss_dssp --ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST--T--CCSEEEEEEEETTEEEEEEEETT---EE
T ss_pred --cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc--c--CCcccCCccEEcCcEEEEEecCC---cE
Confidence 111222333344444432221 12245799998 666655431 1 11122221222244666554332 45
Q ss_pred eEEEEECCCCcEEEe
Q 012184 232 ETIVLNMTKLAWSIL 246 (469)
Q Consensus 232 d~~~~d~~~~~W~~~ 246 (469)
.+| ++ +.....+
T Consensus 286 ~l~-~~--~g~~~~~ 297 (347)
T 2gop_A 286 NLY-IW--DGEIKPI 297 (347)
T ss_dssp EEE-EE--SSSEEEE
T ss_pred EEE-Ec--CCceEEE
Confidence 678 77 3444443
No 348
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=81.18 E-value=12 Score=38.68 Aligned_cols=104 Identities=7% Similarity=-0.033 Sum_probs=49.3
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCC---CCcceEEEEECCCCeE-
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKS---SDSMIVRFIDLETNLC- 91 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~---~~~~~~~~~d~~t~~W- 91 (469)
.++.+|+.+++-..+...... ...........-+++.++++...... .....++++|+.++..
T Consensus 37 ~i~~~~~~~g~~~~~~~~~~~-------------~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~ 103 (719)
T 1z68_A 37 NIVLYNIETGQSYTILSNRTM-------------KSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFV 103 (719)
T ss_dssp CEEEEESSSCCEEEEECHHHH-------------HTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC
T ss_pred CEEEEEcCCCcEEEEEccccc-------------cccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccc
Confidence 788999988886655432100 00001111112244444444321110 1134699999999876
Q ss_pred --EEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEee
Q 012184 92 --GVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVE 146 (469)
Q Consensus 92 --~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~ 146 (469)
..+. ......+..=+++.++++. .+.++++|+.++.-..+.
T Consensus 104 ~~~~l~-------~~~~~~~~SPDG~~la~~~-------~~~i~~~~~~~g~~~~l~ 146 (719)
T 1z68_A 104 RGNELP-------RPIQYLCWSPVGSKLAYVY-------QNNIYLKQRPGDPPFQIT 146 (719)
T ss_dssp CSSCCC-------SSBCCEEECSSTTCEEEEE-------TTEEEEESSTTSCCEECC
T ss_pred cceecC-------cccccceECCCCCEEEEEE-------CCeEEEEeCCCCCcEEEe
Confidence 3221 1111111111344333431 236888888877665554
No 349
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=81.07 E-value=20 Score=28.87 Aligned_cols=20 Identities=0% Similarity=0.117 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012184 429 IENEVQILRQQKSAFEQEME 448 (469)
Q Consensus 429 ~e~e~~~~~q~~~~~~~~~~ 448 (469)
|++++.+..-.+..++.++.
T Consensus 120 L~~ql~e~~~~l~~lq~ql~ 139 (154)
T 2ocy_A 120 LTEQLREKDTLLDTLTLQLK 139 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444443
No 350
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=81.03 E-value=46 Score=33.04 Aligned_cols=115 Identities=12% Similarity=0.057 Sum_probs=59.4
Q ss_pred EEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCC
Q 012184 161 ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTK 240 (469)
Q Consensus 161 ~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~ 240 (469)
...+++.+++..+.. +.+.+||+.+..-..+... +. .. .+..-+++.+++++.+.. ....++++|+.+
T Consensus 117 ~s~dg~~~~~~s~~~-----~~~~l~d~~~g~~~~l~~~---~~--~~-~~~spDG~~la~~~~~~~-~~~~i~~~d~~~ 184 (582)
T 3o4h_A 117 GVDTGEAVVFTGATE-----DRVALYALDGGGLRELARL---PG--FG-FVSDIRGDLIAGLGFFGG-GRVSLFTSNLSS 184 (582)
T ss_dssp EEECSSCEEEEEECS-----SCEEEEEEETTEEEEEEEE---SS--CE-EEEEEETTEEEEEEEEET-TEEEEEEEETTT
T ss_pred eCCCCCeEEEEecCC-----CCceEEEccCCcEEEeecC---CC--ce-EEECCCCCEEEEEEEcCC-CCeEEEEEcCCC
Confidence 333344455554432 2344778888876665421 11 22 222235555555543322 234699999999
Q ss_pred CcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCCC
Q 012184 241 LAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIP 298 (469)
Q Consensus 241 ~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w~ 298 (469)
..+..+..... ........++++.++.+..++ ...++++|+.+....
T Consensus 185 g~~~~l~~~~~---------~~~~~~~SpDG~~l~~~~~~~--~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 185 GGLRVFDSGEG---------SFSSASISPGMKVTAGLETAR--EARLVTVDPRDGSVE 231 (582)
T ss_dssp CCCEEECCSSC---------EEEEEEECTTSCEEEEEECSS--CEEEEEECTTTCCEE
T ss_pred CCceEeecCCC---------ccccceECCCCCEEEEccCCC--eeEEEEEcCCCCcEE
Confidence 88877643211 112233344444444443332 346889998766543
No 351
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=80.76 E-value=3.1 Score=23.43 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012184 426 SQTIENEVQILRQQKSAFEQEMERATSV 453 (469)
Q Consensus 426 ~~~~e~e~~~~~q~~~~~~~~~~~~~~~ 453 (469)
+.++|..++++.+++..++.|+.+++..
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567777778888888887777766554
No 352
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=80.74 E-value=10 Score=26.07 Aligned_cols=15 Identities=40% Similarity=0.488 Sum_probs=5.6
Q ss_pred hHHHHHHHHHHHHHH
Q 012184 390 ELSKELSSVQGQLVA 404 (469)
Q Consensus 390 e~~~el~~~~~~l~~ 404 (469)
++...+...+++++.
T Consensus 15 el~~klk~~~ee~~~ 29 (71)
T 1uix_A 15 ELNNKLKEAQEQLSR 29 (71)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 353
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=80.65 E-value=33 Score=31.08 Aligned_cols=206 Identities=10% Similarity=-0.024 Sum_probs=100.3
Q ss_pred eeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCC-CCCCCcceEEEEE--CCEEEEEeccCCC-----
Q 012184 56 HCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGK-VPVARGGHSVTLV--GSRLIIFGGEDRS----- 125 (469)
Q Consensus 56 ~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~-~p~~r~~~~~~~~--~~~lyi~GG~~~~----- 125 (469)
+.++.. ++.||+.-.. ..+.+||+.++..+.+..... .+..+ -..+++- ++.||+.-.....
T Consensus 83 ~gi~~~~~~g~l~v~d~~-------~~i~~~d~~~g~~~~~~~~~~~~~~~~-p~~i~~d~~~G~l~v~d~~~~~~~~~~ 154 (322)
T 2fp8_A 83 YDISYNLQNNQLYIVDCY-------YHLSVVGSEGGHATQLATSVDGVPFKW-LYAVTVDQRTGIVYFTDVSTLYDDRGV 154 (322)
T ss_dssp EEEEEETTTTEEEEEETT-------TEEEEECTTCEECEEEESEETTEECSC-EEEEEECTTTCCEEEEESCSSCCTTCH
T ss_pred ceEEEcCCCCcEEEEECC-------CCEEEEeCCCCEEEEecccCCCCcccc-cceEEEecCCCEEEEECCccccccccc
Confidence 445555 5788887321 128889988776666542111 11111 1223332 4678876322100
Q ss_pred ------CCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcC-cEEEEEecCCCCcccCcEEEEECCCC---ceEe
Q 012184 126 ------RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTN---EWSQ 195 (469)
Q Consensus 126 ------~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~---~W~~ 195 (469)
......+++||+.+.....+... ...| ..++...+ +.||+.-.. .+.|++|++.+. ....
T Consensus 155 ~~~~~~~~~~g~v~~~d~~~~~~~~~~~~--~~~p---~gia~~~dg~~lyv~d~~-----~~~I~~~~~~~~~~~~~~~ 224 (322)
T 2fp8_A 155 QQIMDTSDKTGRLIKYDPSTKETTLLLKE--LHVP---GGAEVSADSSFVLVAEFL-----SHQIVKYWLEGPKKGTAEV 224 (322)
T ss_dssp HHHHHHTCCCEEEEEEETTTTEEEEEEEE--ESCC---CEEEECTTSSEEEEEEGG-----GTEEEEEESSSTTTTCEEE
T ss_pred ceehcccCCCceEEEEeCCCCEEEEeccC--CccC---cceEECCCCCEEEEEeCC-----CCeEEEEECCCCcCCccce
Confidence 01235699999988876654321 1111 23343334 458876432 357999998753 3333
Q ss_pred eeecCCCCCCCcceEEEEE-CCEEEEEecCCCC-----CCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcC
Q 012184 196 PEIKGDLVTGRAGHAGITI-DENWYIVGGGDNN-----NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG 269 (469)
Q Consensus 196 ~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~-----~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~ 269 (469)
+. ..+. ...++.. ++++||....... .....+.+||+....-..+....+. + .. ..+.+. . .
T Consensus 225 ~~---~~~g---P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~-~-~~-~~~~~~--~-~ 292 (322)
T 2fp8_A 225 LV---KIPN---PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPF-A-GE-HFEQIQ--E-H 292 (322)
T ss_dssp EE---ECSS---EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTT-T-TS-CCCEEE--E-E
T ss_pred EE---eCCC---CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCC-c-cc-cceEEE--E-e
Confidence 32 1221 2223332 4578877532110 0124588999875544444321111 0 01 111111 1 2
Q ss_pred CcEEEEEeccCCCCCceEEEEECCCC
Q 012184 270 EHHLVAFGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 270 ~~~l~v~GG~~~~~~~~~~~~d~~~~ 295 (469)
++.|||.... .+.+.+|++..+
T Consensus 293 ~g~L~v~~~~----~~~i~~~~~~~~ 314 (322)
T 2fp8_A 293 DGLLYIGTLF----HGSVGILVYDKK 314 (322)
T ss_dssp TTEEEEECSS----CSEEEEEEC---
T ss_pred CCEEEEeecC----CCceEEEecccc
Confidence 5688876532 235888887543
No 354
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=80.40 E-value=8.5 Score=28.21 Aligned_cols=41 Identities=29% Similarity=0.485 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 012184 410 FKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERA 450 (469)
Q Consensus 410 ~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~~~ 450 (469)
.+++.++.++++++..++..+.+.-.++-+-..++.+|+..
T Consensus 50 ~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 50 KHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666655555555666666544
No 355
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=80.40 E-value=15 Score=29.42 Aligned_cols=43 Identities=21% Similarity=0.297 Sum_probs=24.8
Q ss_pred hcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 012184 385 NSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 427 (469)
Q Consensus 385 ~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~ 427 (469)
.....+..+.+..++..|....++....+..+.+|+.++..+.
T Consensus 72 drKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~ 114 (147)
T 2b9c_A 72 DRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVT 114 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555666666666666666666666666655544
No 356
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=80.34 E-value=16 Score=33.96 Aligned_cols=13 Identities=8% Similarity=0.212 Sum_probs=6.6
Q ss_pred hhHHHHHHhHHHH
Q 012184 351 TDIDAIKEDKRVL 363 (469)
Q Consensus 351 ~~~~~l~~~~~~~ 363 (469)
..++.|+++...+
T Consensus 67 ~rIe~L~~~L~~~ 79 (390)
T 1deq_A 67 SRINKLRDSLFNY 79 (390)
T ss_pred HHHHHHHHHHHHH
Confidence 3355555555444
No 357
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=80.28 E-value=15 Score=28.25 Aligned_cols=12 Identities=33% Similarity=0.506 Sum_probs=4.9
Q ss_pred hhHHHHHHHHHH
Q 012184 406 RSRCFKLEAQIA 417 (469)
Q Consensus 406 ~~~~~~~~~~~~ 417 (469)
+.++..|+.+++
T Consensus 46 ~~~i~~Le~eL~ 57 (120)
T 3i00_A 46 KGHVSELEADLA 57 (120)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 358
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=80.22 E-value=6.7 Score=28.05 Aligned_cols=20 Identities=15% Similarity=0.112 Sum_probs=7.2
Q ss_pred HHHHHHHHhhhHHHHHHHHH
Q 012184 397 SVQGQLVAERSRCFKLEAQI 416 (469)
Q Consensus 397 ~~~~~l~~~~~~~~~~~~~~ 416 (469)
+++.++..++..++++..++
T Consensus 31 ~Lq~Ev~~LRGqiE~~~~~l 50 (83)
T 2xdj_A 31 DNQSDIDSLRGQIQENQYQL 50 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 33333333333333333333
No 359
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=80.15 E-value=3.6 Score=30.48 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHH
Q 012184 390 ELSKELSSVQGQLVAERSRCFKLEAQ 415 (469)
Q Consensus 390 e~~~el~~~~~~l~~~~~~~~~~~~~ 415 (469)
.+.+++..++.+...++++...|+-+
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 360
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=80.02 E-value=72 Score=34.58 Aligned_cols=197 Identities=10% Similarity=0.020 Sum_probs=96.2
Q ss_pred ceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEee
Q 012184 16 VVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME 95 (469)
Q Consensus 16 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~ 95 (469)
.++.+|+.++.-..+.... ......+..-+++.++++...........++.+|..++.-..+.
T Consensus 34 ~l~~~~~~gg~~~~lt~~~-----------------~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt 96 (1045)
T 1k32_A 34 DLWEHDLKSGSTRKIVSNL-----------------GVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRIT 96 (1045)
T ss_dssp EEEEEETTTCCEEEEECSS-----------------SEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECC
T ss_pred cEEEEECCCCcEEEeeeCC-----------------CcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcc
Confidence 6777787777655554321 11111112224554444433211112346999999998755554
Q ss_pred cCCCCCCCC-cceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEe
Q 012184 96 TSGKVPVAR-GGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG 172 (469)
Q Consensus 96 ~~g~~p~~r-~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~G 172 (469)
..+.....| .....+.+ ++++++.+...........++.+|+.++....+.. .+ . ..+... .+ +++.|
T Consensus 97 ~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~---~~--~--~~~~~s-pG-~l~~~ 167 (1045)
T 1k32_A 97 YFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL---GP--A--THILFA-DG-RRVIG 167 (1045)
T ss_dssp CCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS---CS--C--SEEEEE-TT-EEEEE
T ss_pred cCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecC---CC--c--ceeeeC-CC-EEEEe
Confidence 210000001 11133333 45666666544332235679999998887665542 11 1 122222 35 55555
Q ss_pred cCCC---------CcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcE
Q 012184 173 GCSH---------SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAW 243 (469)
Q Consensus 173 G~~~---------~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W 243 (469)
.... ......+|.++.. .....+. . ........+..++.+++.+..+ ....+|.+++....-
T Consensus 168 ~~~~~~~~~~~~~g~~~~~lw~~~~~-~~~~~l~---~--~~~~v~~~~~s~d~l~~~~~~d---g~~~l~~~~~~g~~~ 238 (1045)
T 1k32_A 168 RNTFELPHWKGYRGGTRGKIWIEVNS-GAFKKIV---D--MSTHVSSPVIVGHRIYFITDID---GFGQIYSTDLDGKDL 238 (1045)
T ss_dssp ESCSCCTTSTTCCSTTCCEEEEEEET-TEEEEEE---C--CSSCCEEEEEETTEEEEEECTT---SSCEEEEEETTSCSC
T ss_pred ccCCCccccccccCCCcCCEEEECCC-CCeEECc---C--CCCcccceEEeCCEEEEEEecc---CceEEEEEeCCCCcc
Confidence 3211 1223567766544 5555542 1 1122223444466777666533 245789998876655
Q ss_pred EEec
Q 012184 244 SILT 247 (469)
Q Consensus 244 ~~~~ 247 (469)
..+.
T Consensus 239 ~~l~ 242 (1045)
T 1k32_A 239 RKHT 242 (1045)
T ss_dssp EECC
T ss_pred eEec
Confidence 5543
No 361
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=79.69 E-value=5.5 Score=38.19 Aligned_cols=39 Identities=15% Similarity=0.329 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 012184 389 SELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 427 (469)
Q Consensus 389 ~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~ 427 (469)
.+++.+++.++++..++++.+.+++.+++++.+++...+
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 44 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEE 44 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555555444444
No 362
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=79.40 E-value=35 Score=30.68 Aligned_cols=141 Identities=9% Similarity=-0.040 Sum_probs=70.4
Q ss_pred eEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEe-
Q 012184 17 VMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM- 94 (469)
Q Consensus 17 ~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~- 94 (469)
++.||+.+++...+... +..+.....+.. ++.+|+.-- ....+|++|+.++.-...
T Consensus 97 v~~~d~~~g~~~~~~~~----------------~~~~~~~g~~~~~~~~~~v~d~------~~g~i~~~d~~~~~~~v~~ 154 (306)
T 2p4o_A 97 VVSLVKSDGTVETLLTL----------------PDAIFLNGITPLSDTQYLTADS------YRGAIWLIDVVQPSGSIWL 154 (306)
T ss_dssp EEEEECTTSCEEEEEEC----------------TTCSCEEEEEESSSSEEEEEET------TTTEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCeEEEEEeC----------------CCccccCcccccCCCcEEEEEC------CCCeEEEEeCCCCcEeEEE
Confidence 77788888877666554 223333333322 556676521 123599999987532211
Q ss_pred -ecCCC--CCCC--CcceEEEEECCEEEEEeccCCCCCccCcEEEEECCC-CeEEEeeeCCCCCCCCCCceEEEEcCcEE
Q 012184 95 -ETSGK--VPVA--RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET-MTWDAVEVTQTPPAPRYDHSAALHANRYL 168 (469)
Q Consensus 95 -~~~g~--~p~~--r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t-~~W~~~~~~g~~p~~r~~~~~~~~~~~~l 168 (469)
..... .+.. ....++..-++.||+.-- ..+.|++|++.. .............. -..+++..++.+
T Consensus 155 ~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~------~~~~I~~~~~~~~g~~~~~~~~~~~~~---P~gi~vd~dG~l 225 (306)
T 2p4o_A 155 EHPMLARSNSESVFPAANGLKRFGNFLYVSNT------EKMLLLRIPVDSTDKPGEPEIFVEQTN---IDDFAFDVEGNL 225 (306)
T ss_dssp ECGGGSCSSTTCCSCSEEEEEEETTEEEEEET------TTTEEEEEEBCTTSCBCCCEEEEESCC---CSSEEEBTTCCE
T ss_pred ECCccccccccCCCCcCCCcCcCCCEEEEEeC------CCCEEEEEEeCCCCCCCccEEEeccCC---CCCeEECCCCCE
Confidence 11000 1111 112223333567887632 356799999875 22111110001111 133455456778
Q ss_pred EEEecCCCCcccCcEEEEECCCCceE
Q 012184 169 IVFGGCSHSIFFNDLHVLDLQTNEWS 194 (469)
Q Consensus 169 ~v~GG~~~~~~~~~i~~~d~~~~~W~ 194 (469)
|+.-.. .+.|.+||+. ++..
T Consensus 226 ~va~~~-----~~~V~~~~~~-G~~~ 245 (306)
T 2p4o_A 226 YGATHI-----YNSVVRIAPD-RSTT 245 (306)
T ss_dssp EEECBT-----TCCEEEECTT-CCEE
T ss_pred EEEeCC-----CCeEEEECCC-CCEE
Confidence 886432 2579999986 4443
No 363
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=79.32 E-value=11 Score=28.84 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 012184 428 TIENEVQILRQQKSAFEQEMERA 450 (469)
Q Consensus 428 ~~e~e~~~~~q~~~~~~~~~~~~ 450 (469)
.++.++..+..++..++.++++.
T Consensus 81 ~ie~~i~~le~~~~~l~~~l~~l 103 (117)
T 2zqm_A 81 TLEVRLNALERQEKKLNEKLKEL 103 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554433
No 364
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=79.30 E-value=3.2 Score=23.54 Aligned_cols=29 Identities=10% Similarity=0.210 Sum_probs=20.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012184 425 SSQTIENEVQILRQQKSAFEQEMERATSV 453 (469)
Q Consensus 425 ~~~~~e~e~~~~~q~~~~~~~~~~~~~~~ 453 (469)
.+.+||..++++...+..++.+..+++..
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35577777888888888887777666543
No 365
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=79.24 E-value=31 Score=29.91 Aligned_cols=62 Identities=15% Similarity=0.234 Sum_probs=39.4
Q ss_pred cCcEEEEEecCCCCcccCcEEEEECCCCceEe-eeecC-CCCC------CCcceEEEE--ECCEEEEEecCCCCCCcceE
Q 012184 164 ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKG-DLVT------GRAGHAGIT--IDENWYIVGGGDNNNGCQET 233 (469)
Q Consensus 164 ~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~-~~p~------~r~~~~~~~--~~~~l~v~GG~~~~~~~~d~ 233 (469)
.++++|+|-| +..|+||..+.+... +.... ..|. +..-.++.. .++++|+|=| +..
T Consensus 126 ~~gk~yfFkG-------~~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG-------~~y 191 (225)
T 3oyo_A 126 KGKEVYLFKG-------NKYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG-------QNY 191 (225)
T ss_dssp STTEEEEEET-------TEEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET-------TEE
T ss_pred CCCcEEEEeC-------CeEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC-------CEE
Confidence 3689999987 578999977665443 11111 1221 222334444 3689999977 378
Q ss_pred EEEECC
Q 012184 234 IVLNMT 239 (469)
Q Consensus 234 ~~~d~~ 239 (469)
|+||..
T Consensus 192 wr~d~~ 197 (225)
T 3oyo_A 192 VRIDFT 197 (225)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 999987
No 366
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=79.24 E-value=17 Score=34.59 Aligned_cols=9 Identities=11% Similarity=0.076 Sum_probs=3.6
Q ss_pred HHHhHHHHh
Q 012184 356 IKEDKRVLE 364 (469)
Q Consensus 356 l~~~~~~~~ 364 (469)
++...+.|+
T Consensus 36 V~~~l~~LE 44 (409)
T 1m1j_C 36 TDGELLEIE 44 (409)
T ss_dssp HHHHHHHHH
T ss_pred chhHHHHHH
Confidence 334444443
No 367
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=79.11 E-value=13 Score=26.80 Aligned_cols=44 Identities=25% Similarity=0.188 Sum_probs=21.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 012184 402 LVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEME 448 (469)
Q Consensus 402 l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~ 448 (469)
++..+..+..++.++++++.. ++.+-+|.+.+..-|-+++.++.
T Consensus 30 l~~~q~~i~~lE~el~~~r~e---~~~ql~EYq~LlnvK~~Le~EIa 73 (86)
T 1x8y_A 30 RDTSRRLLAEKEREMAEMRAR---MQQQLDEYQELLDIKLALDMEIH 73 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHH
Confidence 333344444444444433332 22334466666666667776654
No 368
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=78.94 E-value=29 Score=32.65 Aligned_cols=152 Identities=13% Similarity=0.109 Sum_probs=72.4
Q ss_pred EEEEECCEEEEEeccCCCCCccCcEEEEECCCCeE--EEeeeC-CCCCCCCCCceEEEE-cCcEEEEEecCCCCcccCcE
Q 012184 108 SVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW--DAVEVT-QTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDL 183 (469)
Q Consensus 108 ~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W--~~~~~~-g~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i 183 (469)
+++.+++++|+|=|. .+|+++.....- ..+... ..+|. ... ++... .++++|+|-| +..
T Consensus 185 Av~~~~g~~~fFkg~--------~~Wr~~~~~~~~~p~~I~~~wpgLP~-~iD-Aa~~~~~~g~~~fFkg-------~~y 247 (365)
T 3ba0_A 185 AVTTVGNKIFFFKDR--------FFWLKVSERPKTSVNLISSLWPTLPS-GIE-AAYEIEARNQVFLFKD-------DKY 247 (365)
T ss_dssp CEEEETTEEEEEETT--------EEEECCSSCCCCCEEEHHHHCSSCCS-SCC-EEEEEGGGTEEEEEET-------TEE
T ss_pred eEEEcCCeEEEEeCC--------EEEEEcCCCccCCccchhhhccCCCC-Ccc-EEEEecCCCEEEEEeC-------CEE
Confidence 345578999999553 255554332210 111111 12332 222 23233 3678999987 457
Q ss_pred EEEECCCCc--eE-eeeecCCCCCC-CcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEEE-----ecc-CCC
Q 012184 184 HVLDLQTNE--WS-QPEIKGDLVTG-RAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSI-----LTS-VKG 251 (469)
Q Consensus 184 ~~~d~~~~~--W~-~~~~~~~~p~~-r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~-----~~~-~~~ 251 (469)
|+|+..... +- .+... .+|.. ..--++... ++++|+|=| +..|+||..+..-.. +.. .++
T Consensus 248 Wr~~~~~~~~gyPk~I~~~-GlP~~~~~IDAA~~~~~~~~~yfFkG-------~~yw~yd~~~~~v~~gyPk~I~~~f~g 319 (365)
T 3ba0_A 248 WLISNLRPEPNYPKSIHSF-GFPNFVKKIDAAVFNPRFYRTYFFVD-------NQYWRYDERRQMMDPGYPKLITKNFQG 319 (365)
T ss_dssp EECSTTSCTTTCSEETTTT-TCCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCCCHHHHSTT
T ss_pred EEEcCCcccCCCCceeeec-cCCCCCCCcCEEEEeCCCCEEEEEEC-------CEEEEEeCCcceecCCCCcchhhcCCC
Confidence 777643221 11 11111 12321 112244433 478999977 378999987653211 000 011
Q ss_pred CCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCC
Q 012184 252 RNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD 296 (469)
Q Consensus 252 ~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~ 296 (469)
.| . ... ++....++.+|.|=| +..|+||..+..
T Consensus 320 -~p--~-~iD--aA~~~~~g~~YfFkg------~~ywr~d~~~~~ 352 (365)
T 3ba0_A 320 -IG--P-KID--AVFYSKNKYYYFFQG------SNQFEYDFLLQR 352 (365)
T ss_dssp -CC--S-SCS--EEEEETTTEEEEEET------TEEEEEETTTTE
T ss_pred -CC--C-ccc--eeeEecCCcEEEEeC------CEEEEEECCccE
Confidence 11 1 111 222222457887766 358899886543
No 369
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=78.92 E-value=6.2 Score=27.27 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=9.5
Q ss_pred hhhHhhhhhhhcchhhHHHHHHHH
Q 012184 375 SRFREKIDEVNSTHSELSKELSSV 398 (469)
Q Consensus 375 ~~l~~~~~~~~~~~~e~~~el~~~ 398 (469)
..|..+++++-.+..-+..|+..+
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~ 56 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAV 56 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 334444444443333333333333
No 370
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=78.80 E-value=19 Score=30.53 Aligned_cols=150 Identities=15% Similarity=0.150 Sum_probs=73.8
Q ss_pred EEEECCEEEEEeccCCCCCccCcEEEEECCC---CeEEEeeeC-CCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEE
Q 012184 109 VTLVGSRLIIFGGEDRSRKLLNDVHFLDLET---MTWDAVEVT-QTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLH 184 (469)
Q Consensus 109 ~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t---~~W~~~~~~-g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~ 184 (469)
++.+++++|+|-|. .+|+++... +-=..+... ..+|.. .. ++....++++|+|-| +..|
T Consensus 11 ~~~~~g~~~fFkg~--------~~w~~~~~~~~~gyP~~I~~~w~glP~~-iD-Aa~~~~~g~~yfFkg-------~~yw 73 (196)
T 3c7x_A 11 VAMLRGEMFVFKER--------WFWRVRNNQVMDGYPMPIGQFWRGLPAS-IN-TAYERKDGKFVFFKG-------DKHW 73 (196)
T ss_dssp EEEETTEEEEEETT--------EEEEEETTEECTTCSEEHHHHSTTCCSS-CC-EEEECTTSCEEEEET-------TEEE
T ss_pred EEEcCCEEEEEECC--------EEEEEECCccCCCCceEhhHhccCCCCC-cc-EEEEeCCCcEEEecC-------CEEE
Confidence 44678999999653 266665321 000111111 123432 22 222234678999987 5688
Q ss_pred EEECCCCceE---eeeecC-CCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEE-----EeccCCCCC
Q 012184 185 VLDLQTNEWS---QPEIKG-DLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWS-----ILTSVKGRN 253 (469)
Q Consensus 185 ~~d~~~~~W~---~~~~~~-~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~-----~~~~~~~~~ 253 (469)
+|+-.+...- .+...+ .+|..... ||... ++++|+|=| +..|+||..+..-. .+...++ .
T Consensus 74 ~~~~~~~~~gyPk~I~~~~~glP~~~ID-AA~~~~~~g~~yfFkG-------~~yw~yd~~~~~v~~gyPk~i~~~~g-i 144 (196)
T 3c7x_A 74 VFDEASLEPGYPKHIKELGRGLPTDKID-AALFWMPNGKTYFFRG-------NKYYRFNEELRAVDSEYPKNIKVWEG-I 144 (196)
T ss_dssp EEETTEECTTCSEEGGGTCBSCCSSCCS-EEEEETTTTEEEEEET-------TEEEEEETTTTEECTTCSEEGGGSBT-C
T ss_pred EEeCCcccCCCCeEhhhcCCCCCCCccc-EEEEEccCCEEEEEEC-------CEEEEEeCCcccccCCCCccHHHCCC-c
Confidence 8885422111 111111 13323333 33332 589999977 37899998765321 1111111 1
Q ss_pred CCCCCCcceEEEEEcCC-cEEEEEeccCCCCCceEEEEECCCC
Q 012184 254 PLASEGLSVCSAIIEGE-HHLVAFGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 254 p~~r~~~s~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~d~~~~ 295 (469)
| ..+-++....+ +.+|.|=| +..|+||..+.
T Consensus 145 p-----~~idaAf~~~~~~~~YfFkg------~~y~r~d~~~~ 176 (196)
T 3c7x_A 145 P-----ESPRGSFMGSDEVFTYFYKG------NKYWKFNNQKL 176 (196)
T ss_dssp C-----SSCSEEEECTTSSEEEEEET------TEEEEEETTTT
T ss_pred C-----CCcceeEEecCCCEEEEEEC------CEEEEEECCcc
Confidence 1 11122222223 47888866 35889998654
No 371
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=78.51 E-value=47 Score=31.57 Aligned_cols=199 Identities=12% Similarity=0.061 Sum_probs=101.4
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
++.||+.... ...+.++|+.++.-..+...+. ..+ ++.. ++.||+...... ..+++|++.+
T Consensus 141 ~g~lyv~d~~------~~~I~~id~~~g~~~~~~~~~~-----~~~-ia~~~~g~~l~~~d~~~~-----~~I~~~d~~~ 203 (409)
T 3hrp_A 141 NNTVLAYQRD------DPRVRLISVDDNKVTTVHPGFK-----GGK-PAVTKDKQRVYSIGWEGT-----HTVYVYMKAS 203 (409)
T ss_dssp TTEEEEEETT------TTEEEEEETTTTEEEEEEETCC-----BCB-CEECTTSSEEEEEBSSTT-----CEEEEEEGGG
T ss_pred CCCEEEEecC------CCcEEEEECCCCEEEEeeccCC-----CCc-eeEecCCCcEEEEecCCC-----ceEEEEEcCC
Confidence 6788888542 2349999999988777653321 122 2222 345666543211 1699999875
Q ss_pred Ce-EEEeeeCCCCCCCCCCceEEEEc-CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcc-e-EEEEE-
Q 012184 140 MT-WDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAG-H-AGITI- 214 (469)
Q Consensus 140 ~~-W~~~~~~g~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~-~-~~~~~- 214 (469)
.. ...+..... +....-+.+++.. ++.||+... .+.+++||+.+.....+...+........ + .++..
T Consensus 204 ~~~~~~~g~~~~-~~~~~p~~iav~p~~g~lyv~d~------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p 276 (409)
T 3hrp_A 204 GWAPTRIGQLGS-TFSGKIGAVALDETEEWLYFVDS------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYF 276 (409)
T ss_dssp TTCEEEEEECCT-TSCSCCCBCEECTTSSEEEEECT------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEET
T ss_pred CceeEEeeeccc-hhcCCcEEEEEeCCCCeEEEEEC------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeC
Confidence 43 223311111 0122223444444 678888322 24799999988775544221111111222 1 44444
Q ss_pred -CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCC-------CCCCCcceEEEEEcCCcEEEEEec-cCCCCCc
Q 012184 215 -DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNP-------LASEGLSVCSAIIEGEHHLVAFGG-YNGKYNN 285 (469)
Q Consensus 215 -~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p-------~~r~~~s~~~~~~~~~~~l~v~GG-~~~~~~~ 285 (469)
++.||+.... .+.+++||..... ..+........ ..+.. ....+++++++.||+.-. . ..
T Consensus 277 ~~g~lyv~d~~-----~~~I~~~~~~g~~-~~~~g~~~~~g~~dg~~~~~~~~-~P~gia~d~dG~lyvad~~~----~~ 345 (409)
T 3hrp_A 277 VDSNFYMSDQN-----LSSVYKITPDGEC-EWFCGSATQKTVQDGLREEALFA-QPNGMTVDEDGNFYIVDGFK----GY 345 (409)
T ss_dssp TTTEEEEEETT-----TTEEEEECTTCCE-EEEEECTTCCSCBCEEGGGCBCS-SEEEEEECTTCCEEEEETTT----TC
T ss_pred CCCEEEEEeCC-----CCEEEEEecCCCE-EEEEeCCCCCCcCCCcccccEeC-CCeEEEEeCCCCEEEEeCCC----CC
Confidence 4788887432 3468899887552 22211110000 00111 123344555566888754 3 33
Q ss_pred eEEEEECCCC
Q 012184 286 EVFVMRLKPR 295 (469)
Q Consensus 286 ~~~~~d~~~~ 295 (469)
.+.++++...
T Consensus 346 ~I~~~~~~~G 355 (409)
T 3hrp_A 346 CLRKLDILDG 355 (409)
T ss_dssp EEEEEETTTT
T ss_pred EEEEEECCCC
Confidence 5888885443
No 372
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=78.49 E-value=6.1 Score=37.25 Aligned_cols=12 Identities=17% Similarity=0.227 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 012184 436 LRQQKSAFEQEM 447 (469)
Q Consensus 436 ~~q~~~~~~~~~ 447 (469)
++.++++.+.++
T Consensus 134 ~~~~l~~~~~~l 145 (369)
T 4dk0_A 134 VQENIKQAEIEV 145 (369)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 373
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=78.45 E-value=5 Score=21.80 Aligned_cols=6 Identities=17% Similarity=0.174 Sum_probs=2.1
Q ss_pred hhHHHH
Q 012184 406 RSRCFK 411 (469)
Q Consensus 406 ~~~~~~ 411 (469)
|++++.
T Consensus 19 q~r~dr 24 (32)
T 2akf_A 19 QERLDR 24 (32)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 374
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=78.28 E-value=0.57 Score=44.58 Aligned_cols=105 Identities=17% Similarity=0.022 Sum_probs=42.0
Q ss_pred ECCEEEEEccccCCCCCcceEEEEECCCCe--EEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECC
Q 012184 61 WGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE 138 (469)
Q Consensus 61 ~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~ 138 (469)
.++.||+.+. + ..++.+|..+++ |+.-. +.. ..+.+..++.+|+.++.+ ..++.+|..
T Consensus 8 ~~~~v~~gs~-d------g~v~a~d~~tG~~~W~~~~--~~~-----~s~p~~~~g~~~v~~s~d------g~l~a~d~~ 67 (369)
T 2hz6_A 8 PETLLFVSTL-D------GSLHAVSKRTGSIKWTLKE--DPV-----LQVPTHVEEPAFLPDPND------GSLYTLGSK 67 (369)
T ss_dssp CTTEEEEEET-T------SEEEEEETTTCCEEEEEEC--CCS-----CCCC-----CCEEECTTT------CCEEEC---
T ss_pred eCCEEEEEcC-C------CEEEEEECCCCCEEEEecC--CCc-----eecceEcCCCEEEEeCCC------CEEEEEECC
Confidence 3566665532 2 249999998876 76543 211 112233456677775432 348999987
Q ss_pred CC--eEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc--eEe
Q 012184 139 TM--TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQ 195 (469)
Q Consensus 139 t~--~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~ 195 (469)
++ .|...... +... ..+.+...++.+|+ |+. ...++.+|+.+++ |..
T Consensus 68 tG~~~w~~~~~~---~~~~-~~sp~~~~~~~v~~-g~~-----dg~v~a~D~~tG~~~w~~ 118 (369)
T 2hz6_A 68 NNEGLTKLPFTI---PELV-QASPCRSSDGILYM-GKK-----QDIWYVIDLLTGEKQQTL 118 (369)
T ss_dssp --CCSEECSCCH---HHHH-TTCSCC-----CCC-CEE-----EEEEEEECCC--------
T ss_pred CCceeeeeeccC---cccc-ccCceEecCCEEEE-EeC-----CCEEEEEECCCCcEEEEe
Confidence 65 46532110 0000 01111112444443 332 1458899988765 754
No 375
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=78.01 E-value=14 Score=35.53 Aligned_cols=20 Identities=15% Similarity=0.340 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 012184 428 TIENEVQILRQQKSAFEQEM 447 (469)
Q Consensus 428 ~~e~e~~~~~q~~~~~~~~~ 447 (469)
.|+.-++.+.++++.++..+
T Consensus 167 ~l~~~~~~~~~~i~~l~~~~ 186 (461)
T 3ghg_B 167 VLRSILENLRSKIQKLESDV 186 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444443
No 376
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=77.94 E-value=16 Score=26.06 Aligned_cols=10 Identities=20% Similarity=0.494 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 012184 429 IENEVQILRQ 438 (469)
Q Consensus 429 ~e~e~~~~~q 438 (469)
|+.|+.-.++
T Consensus 66 Ld~EIatYRk 75 (84)
T 1gk4_A 66 LDIEIATYRK 75 (84)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 3344443333
No 377
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=77.62 E-value=16 Score=25.95 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=11.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184 418 ELQKMLESSQTIENEVQILRQQKSAF 443 (469)
Q Consensus 418 e~~~~l~~~~~~e~e~~~~~q~~~~~ 443 (469)
|+....+.++.+|++++...+.+..+
T Consensus 52 el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 52 EISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444333
No 378
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=77.46 E-value=8.3 Score=26.89 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Q 012184 417 AELQKMLESSQTIENEVQILRQQKS 441 (469)
Q Consensus 417 ~e~~~~l~~~~~~e~e~~~~~q~~~ 441 (469)
.|-+.-+...-.|+.|+.-.++-++
T Consensus 33 ~EYq~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 33 DEYQELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333455666666555544
No 379
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=77.13 E-value=29 Score=33.58 Aligned_cols=52 Identities=15% Similarity=0.166 Sum_probs=25.4
Q ss_pred HHHHHHHhhhHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 012184 398 VQGQLVAERSRCFKLEAQIA-ELQKMLESSQTIENEVQILRQQKSAFEQEMER 449 (469)
Q Consensus 398 ~~~~l~~~~~~~~~~~~~~~-e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~~ 449 (469)
++.+++..+++..+.+...+ ++.+-.+.+.+.++++.+.+++|.+-++++.+
T Consensus 46 i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~~kl~aYe~~~~~ 98 (497)
T 3iox_A 46 LTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPVKLKAYEDEQTS 98 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444544444433322 22222333345555666666666666655543
No 380
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=77.05 E-value=9.5 Score=35.45 Aligned_cols=18 Identities=6% Similarity=0.176 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012184 431 NEVQILRQQKSAFEQEME 448 (469)
Q Consensus 431 ~e~~~~~q~~~~~~~~~~ 448 (469)
.+++.++.++++.+.+++
T Consensus 128 a~l~~~~a~l~~a~a~l~ 145 (341)
T 3fpp_A 128 AQIGTIDAQIKRNQASLD 145 (341)
T ss_dssp HHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 381
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=76.63 E-value=5.1 Score=22.57 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012184 426 SQTIENEVQILRQQKSAFEQEMERATSV 453 (469)
Q Consensus 426 ~~~~e~e~~~~~q~~~~~~~~~~~~~~~ 453 (469)
+.+||..++++..++..++.|..+++..
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4567777777777777777777665543
No 382
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.47 E-value=7.5 Score=30.50 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=15.2
Q ss_pred hhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhh
Q 012184 371 RTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER 406 (469)
Q Consensus 371 ~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~ 406 (469)
..+..+|...+.+......+.++++..+..++..+.
T Consensus 45 ~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LT 80 (135)
T 2e7s_A 45 DDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 80 (135)
T ss_dssp HHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443
No 383
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=76.31 E-value=52 Score=30.95 Aligned_cols=189 Identities=11% Similarity=0.008 Sum_probs=99.1
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT 141 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~ 141 (469)
++.||+.-- ....++++++.......+...+ +..+ .+.++-..++.||+.-.. .+.|+++++....
T Consensus 127 ~~~ly~~D~------~~~~I~r~~~~g~~~~~~~~~~-~~~p-~glavd~~~g~lY~~d~~------~~~I~~~~~dg~~ 192 (386)
T 3v65_B 127 RELVFWSDV------TLDRILRANLNGSNVEEVVSTG-LESP-GGLAVDWVHDKLYWTDSG------TSRIEVANLDGAH 192 (386)
T ss_dssp TTEEEEEET------TTTEEEEEETTSCCEEEEECSS-CSCC-CCEEEETTTTEEEEEETT------TTEEEECBTTSCS
T ss_pred CCeEEEEeC------CCCcEEEEecCCCCcEEEEeCC-CCCc-cEEEEEeCCCeEEEEcCC------CCeEEEEeCCCCc
Confidence 678888732 2245999999888776665332 1111 122222236789987432 3468888887654
Q ss_pred EEEeeeCCCCCCCCCCceEEEE-cCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEE
Q 012184 142 WDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENW 218 (469)
Q Consensus 142 W~~~~~~g~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l 218 (469)
-..+.. ..+..| ..+++. .++.||+.--.. .+.|+++++....-..+... .. .....++.- ++.|
T Consensus 193 ~~~l~~-~~l~~P---~giavdp~~g~ly~td~~~----~~~I~r~~~dG~~~~~~~~~-~~---~~PnGlavd~~~~~l 260 (386)
T 3v65_B 193 RKVLLW-QSLEKP---RAIALHPMEGTIYWTDWGN----TPRIEASSMDGSGRRIIADT-HL---FWPNGLTIDYAGRRM 260 (386)
T ss_dssp CEEEEC-SSCSCE---EEEEEETTTTEEEEEECSS----SCEEEEEETTSCSCEEEECS-SC---SCEEEEEEEGGGTEE
T ss_pred eEEeec-CCCCCC---cEEEEEcCCCeEEEeccCC----CCEEEEEeCCCCCcEEEEEC-CC---CCeeeEEEeCCCCEE
Confidence 333321 122222 233333 267788864221 36799999876544333211 11 122234443 6789
Q ss_pred EEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCC
Q 012184 219 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP 294 (469)
Q Consensus 219 ~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~ 294 (469)
|+.-.. .+.|+++|+....-..+.......| .++++ . .+.||+.--. ...+.+++..+
T Consensus 261 Y~aD~~-----~~~I~~~d~dG~~~~~~~~~~~~~P-----~giav---~-~~~ly~td~~----~~~V~~~~~~~ 318 (386)
T 3v65_B 261 YWVDAK-----HHVIERANLDGSHRKAVISQGLPHP-----FAITV---F-EDSLYWTDWH----TKSINSANKFT 318 (386)
T ss_dssp EEEETT-----TTEEEEECTTSCSCEEEECSSCSSE-----EEEEE---E-TTEEEEEETT----TTEEEEEETTT
T ss_pred EEEECC-----CCEEEEEeCCCCeeEEEEECCCCCc-----eEEEE---E-CCEEEEeeCC----CCeEEEEECCC
Confidence 988432 3578999986543233222111111 23332 2 5688877532 34578887433
No 384
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=75.98 E-value=52 Score=30.84 Aligned_cols=198 Identities=12% Similarity=0.021 Sum_probs=100.7
Q ss_pred EEEEECCC--CeEEEeecCCCCCCCCcceEEEEE---CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCC-
Q 012184 81 VRFIDLET--NLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP- 154 (469)
Q Consensus 81 ~~~~d~~t--~~W~~~~~~g~~p~~r~~~~~~~~---~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~- 154 (469)
++.++... .+|..+.. .+....-++++.- .+.||+.+.... .-.-+++.+-...+|+.+......+..
T Consensus 33 l~~~~~~~~g~~W~~~~~---~~~~~~v~~i~~dp~~~~~l~~g~~~g~---~g~gl~~s~D~G~tW~~~~~~~~~~~~~ 106 (394)
T 3b7f_A 33 AWFLASDPARRTWELRGP---VFLGHTIHHIVQDPREPERMLMAARTGH---LGPTVFRSDDGGGNWTEATRPPAFNKAP 106 (394)
T ss_dssp EEEEEECTTSCSEEEEEE---ESTTSEEEEEEECSSSTTCEEEEEEC-----CCEEEEEESSTTSCCEECSBCCCCCCCC
T ss_pred eEEEECCCCCCCceECCc---cCCCCceEEEEECCCCCCeEEEEecCCC---CCccEEEeCCCCCCceECCccccCCCcc
Confidence 67777655 68998752 1222223333333 356776543211 112477776667899987632111211
Q ss_pred -C-----CCce-EEEEc----CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCC--------------CCCcce
Q 012184 155 -R-----YDHS-AALHA----NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLV--------------TGRAGH 209 (469)
Q Consensus 155 -r-----~~~~-~~~~~----~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p--------------~~r~~~ 209 (469)
+ ..+. .+.+. ++.||+.+. ..-+++.+-...+|+.+......| .....+
T Consensus 107 ~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~ 180 (394)
T 3b7f_A 107 EGETGRVVDHVFWLTPGHASEPGTWYAGTS------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMH 180 (394)
T ss_dssp ----CCCCCEEEEEEECCTTSTTCEEEEEE------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEE
T ss_pred cccccccccceeEEEeCCCCCCCEEEEEec------CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCcee
Confidence 1 1111 12232 466777542 134777776778899875211111 112223
Q ss_pred EEEEE---CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCC--CCCC--CCCcceEEEEEcCC--cEEEEEeccC
Q 012184 210 AGITI---DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGR--NPLA--SEGLSVCSAIIEGE--HHLVAFGGYN 280 (469)
Q Consensus 210 ~~~~~---~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~--~p~~--r~~~s~~~~~~~~~--~~l~v~GG~~ 280 (469)
+++.. .+.+|+..+. ..+++.+-...+|+.+...... .|.+ ..+.....+.+++. +.||+..+
T Consensus 181 ~i~~d~~~~~~l~vg~~~------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~-- 252 (394)
T 3b7f_A 181 SILVDPRDPKHLYIGMSS------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH-- 252 (394)
T ss_dssp EEEECTTCTTCEEEEEET------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET--
T ss_pred EEEECCCCCCEEEEEECC------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC--
Confidence 44433 2456665331 2477777778899987531110 1111 12333445555543 56666431
Q ss_pred CCCCceEEEEECCCCCCCCccc
Q 012184 281 GKYNNEVFVMRLKPRDIPRPKI 302 (469)
Q Consensus 281 ~~~~~~~~~~d~~~~~w~~~~~ 302 (469)
..+++.+-...+|.....
T Consensus 253 ----~gl~~s~D~G~tW~~~~~ 270 (394)
T 3b7f_A 253 ----CGIYRMDRREGVWKRIGD 270 (394)
T ss_dssp ----TEEEEEETTTTEEECGGG
T ss_pred ----CeEEEeCCCCCcceECCC
Confidence 248888877888887653
No 385
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=75.69 E-value=11 Score=22.70 Aligned_cols=24 Identities=13% Similarity=0.111 Sum_probs=9.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Q 012184 397 SVQGQLVAERSRCFKLEAQIAELQ 420 (469)
Q Consensus 397 ~~~~~l~~~~~~~~~~~~~~~e~~ 420 (469)
+++..+.++.+++.-++++-+-|+
T Consensus 14 ~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 14 DLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 333333333444444444433333
No 386
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=75.66 E-value=3.3 Score=36.26 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 012184 429 IENEVQILRQQKSAFEQEMERA 450 (469)
Q Consensus 429 ~e~e~~~~~q~~~~~~~~~~~~ 450 (469)
|..++.++++++.++++|++++
T Consensus 73 L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 73 LMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555666666666666544
No 387
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=75.65 E-value=37 Score=28.95 Aligned_cols=109 Identities=14% Similarity=0.157 Sum_probs=55.8
Q ss_pred EEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeC---CCCCCCCCCceEEEEc-CcEEEEEecCCCCcccCcE
Q 012184 108 SVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVT---QTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDL 183 (469)
Q Consensus 108 ~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~---g~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i 183 (469)
+++...+++|+|=|. .+|+++.....+...... ..+|.. --++.... ++++|+|-| +.+
T Consensus 28 Ai~~~~g~~y~Fkg~--------~~wr~~~~~~~~~p~~I~~~wp~Lp~~--iDAa~~~~~~~~iyfFkG-------~~~ 90 (207)
T 1pex_A 28 AITSLRGETMIFKDR--------FFWRLHPQQVDAELFLTKSFWPELPNR--IDAAYEHPSHDLIFIFRG-------RKF 90 (207)
T ss_dssp EEEEETTEEEEEETT--------EEEEECSSSSCCEEEEHHHHCTTSCSS--CCEEEEETTTTEEEEEET-------TEE
T ss_pred EEEeCCCcEEEEECC--------EEEEEeCCCcCCCceehhHhccCCCCC--ccEEEEeccCCcEEEEcc-------CEE
Confidence 445578999999553 266666544332211110 123322 22333332 678999987 567
Q ss_pred EEEECCCCceEeeeecCC--CCCC--CcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCC
Q 012184 184 HVLDLQTNEWSQPEIKGD--LVTG--RAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKL 241 (469)
Q Consensus 184 ~~~d~~~~~W~~~~~~~~--~p~~--r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~ 241 (469)
|+|+-.+..---+..... +|.. ... ||... ++++|+|-| +..|+||..+.
T Consensus 91 w~~~~~~~~~gyPk~I~~~GlP~~~~~ID-AA~~~~~~gk~yfFkG-------~~ywr~d~~~~ 146 (207)
T 1pex_A 91 WALNGYDILEGYPKKISELGLPKEVKKIS-AAVHFEDTGKTLLFSG-------NQVWRYDDTNH 146 (207)
T ss_dssp EEESTTCCCTTCSEESTTTTCCTTCCCCC-EEEECTTTSEEEEEET-------TEEEEEETTTT
T ss_pred EEEeCCeeccCCceeccccCCCCCCcccc-EEEEeCCCCEEEEEeC-------CEEEEEeCcCc
Confidence 787633221100111111 2221 222 33333 478999977 37899998764
No 388
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=75.14 E-value=26 Score=26.89 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=15.2
Q ss_pred hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHh
Q 012184 373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAE 405 (469)
Q Consensus 373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~ 405 (469)
...+++...-.-+.++..++.++..++..+++.
T Consensus 47 KVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~ 79 (167)
T 4gkw_A 47 KVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKA 79 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHH
Confidence 334444444444444555555554444444444
No 389
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=75.08 E-value=46 Score=29.77 Aligned_cols=138 Identities=9% Similarity=0.080 Sum_probs=67.6
Q ss_pred ECCEEEEEccccCCCCCcceEEEEECC-CCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcEEEEECC
Q 012184 61 WGTKLLILGGHYKKSSDSMIVRFIDLE-TNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLE 138 (469)
Q Consensus 61 ~~~~iy~~GG~~~~~~~~~~~~~~d~~-t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v~~~d~~ 138 (469)
.++.||+... ...++.||+. ...|..... .+ . ..+.+.. ++.||+ |.. ...+++||+.
T Consensus 106 ~~~~l~v~t~-------~~~l~~~d~~g~~~~~~~~~---~~--~-~~~~~~~~~g~l~v-gt~------~~~l~~~d~~ 165 (330)
T 3hxj_A 106 FEDILYVTSM-------DGHLYAINTDGTEKWRFKTK---KA--I-YATPIVSEDGTIYV-GSN------DNYLYAINPD 165 (330)
T ss_dssp ETTEEEEECT-------TSEEEEECTTSCEEEEEECS---SC--C-CSCCEECTTSCEEE-ECT------TSEEEEECTT
T ss_pred ECCEEEEEec-------CCEEEEEcCCCCEEEEEcCC---Cc--e-eeeeEEcCCCEEEE-EcC------CCEEEEECCC
Confidence 3778777531 1238999988 334655431 11 1 1222333 566665 322 2458999988
Q ss_pred CC-eEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCC-CceEeeeecCCCCCCCcceEEEEE-C
Q 012184 139 TM-TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT-NEWSQPEIKGDLVTGRAGHAGITI-D 215 (469)
Q Consensus 139 t~-~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~-~~W~~~~~~~~~p~~r~~~~~~~~-~ 215 (469)
.. .|.... +.+ ...+++...++.+|+.. ..+++||... ..|.... +... ..+++.. +
T Consensus 166 g~~~~~~~~-----~~~-~~~~~~~d~~g~l~v~t--------~~l~~~d~~g~~~~~~~~-----~~~~-~~~~~~~~~ 225 (330)
T 3hxj_A 166 GTEKWRFKT-----NDA-ITSAASIGKDGTIYFGS--------DKVYAINPDGTEKWNFYA-----GYWT-VTRPAISED 225 (330)
T ss_dssp SCEEEEEEC-----SSC-CCSCCEECTTCCEEEES--------SSEEEECTTSCEEEEECC-----SSCC-CSCCEECTT
T ss_pred CCEeEEEec-----CCC-ceeeeEEcCCCEEEEEe--------CEEEEECCCCcEEEEEcc-----CCcc-eeceEECCC
Confidence 22 354432 111 12233343466677643 4688999432 2365431 1111 2223333 3
Q ss_pred CEEEEEecCCCCCCcceEEEEECCCCc-EE
Q 012184 216 ENWYIVGGGDNNNGCQETIVLNMTKLA-WS 244 (469)
Q Consensus 216 ~~l~v~GG~~~~~~~~d~~~~d~~~~~-W~ 244 (469)
+.+|+... ...++.||.+... |.
T Consensus 226 g~l~v~t~------~~gl~~~~~~g~~~~~ 249 (330)
T 3hxj_A 226 GTIYVTSL------DGHLYAINPDGTEKWR 249 (330)
T ss_dssp SCEEEEET------TTEEEEECTTSCEEEE
T ss_pred CeEEEEcC------CCeEEEECCCCCEeEE
Confidence 46666431 1257788765433 44
No 390
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=75.07 E-value=83 Score=32.69 Aligned_cols=141 Identities=11% Similarity=0.024 Sum_probs=70.8
Q ss_pred ceEEEEECCCCeE--EEeecCCCCCCCCcceEEEEE--CC-EEEEEeccCCCCCccCcEEEEECCCC--eE--EEeeeCC
Q 012184 79 MIVRFIDLETNLC--GVMETSGKVPVARGGHSVTLV--GS-RLIIFGGEDRSRKLLNDVHFLDLETM--TW--DAVEVTQ 149 (469)
Q Consensus 79 ~~~~~~d~~t~~W--~~~~~~g~~p~~r~~~~~~~~--~~-~lyi~GG~~~~~~~~~~v~~~d~~t~--~W--~~~~~~g 149 (469)
..++.+++.+..- ..+.. .+..... ..+.+ ++ +|++..... ..++++++|+.+. .+ ..+...
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~---~~~~~~~-~~~~~SpDg~~l~~~~~~~----~~~~l~~~d~~~~~~~~~~~~l~~~- 317 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYE---EHNPLFS-AFMYKAADTNTLCIGSQSP----ETAEVHLLDLRKGNAHNTLEIVRPR- 317 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEE---CCCTTCE-EEEEECTTSSEEEEEEECS----SCEEEEEEESSSCTTCCCEEESSCC-
T ss_pred CEEEEEECCCCchhcEEEEe---cCCCceE-EEEEECCCCCEEEEEecCC----CCceEEEEECCCCCCCceeEEeecC-
Confidence 4688888877531 12211 1112222 22222 33 455554322 3668999999875 45 544321
Q ss_pred CCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCC-CceEe-eeecCCCCCCCcceEEEEECCEEEEEecCCCC
Q 012184 150 TPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT-NEWSQ-PEIKGDLVTGRAGHAGITIDENWYIVGGGDNN 227 (469)
Q Consensus 150 ~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~-~~W~~-~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~ 227 (469)
...+ .+......++.||+..-.+ ......++.+|+.+ ..|.. +.. . ............++.|++..-.+
T Consensus 318 -~~~~--~~s~~~~~g~~l~~~t~~~-~a~~~~L~~~d~~~~~~~~~~li~--~-~~~~~l~~~~~~~~~lv~~~~~~-- 388 (751)
T 2xe4_A 318 -EKGV--RYDVQMHGTSHLVILTNEG-GAVNHKLLIAPRGQPSDWSHVLVD--H-SEDVFMESIAVRSNYLVVAGRRA-- 388 (751)
T ss_dssp -CTTC--CEEEEEETTTEEEEEECTT-TCTTCEEEEEETTSTTCCCCEEEC--C-CSSEEEEEEEECSSEEEEEEEET--
T ss_pred -CCCc--eEEEeeeeCCEEEEEeCCC-CCCCcEEEEEcCCCcccceeeEEC--C-CCCcEEEEEEEECCEEEEEEEeC--
Confidence 1111 1222212366788876543 12235799999876 67876 431 1 11112123334466776664322
Q ss_pred CCcceEEEEEC
Q 012184 228 NGCQETIVLNM 238 (469)
Q Consensus 228 ~~~~d~~~~d~ 238 (469)
....++++|+
T Consensus 389 -g~~~l~~~dl 398 (751)
T 2xe4_A 389 -GLTRIWTMMA 398 (751)
T ss_dssp -TEEEEEEEEC
T ss_pred -CEEEEEEEec
Confidence 2457889986
No 391
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=75.07 E-value=61 Score=31.14 Aligned_cols=121 Identities=20% Similarity=0.130 Sum_probs=63.4
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccC---CCCCccCcEEEEE
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGED---RSRKLLNDVHFLD 136 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~---~~~~~~~~v~~~d 136 (469)
..++|+.-....+ ..+.+.++|+.+++=..--..|..| .++.- +.++|+.--.. ..+...+.|.++|
T Consensus 84 ~~~vyV~n~~~~~--~~~~VsVID~~t~~vv~~I~vG~~P------gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD 155 (426)
T 3c75_H 84 ARRVYIQDPAHFA--AITQQFVIDGSTGRILGMTDGGFLP------HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFD 155 (426)
T ss_dssp TTEEEEEECTTTC--SSEEEEEEETTTTEEEEEEEECSSC------EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCEEEEECCCcCC--CCCeEEEEECCCCEEEEEEECCCCC------ceEECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 5677877542211 1167999999999865444333322 22222 34677763110 0011256799999
Q ss_pred CCCCeEEE-eeeCCCCC--CCCCCceEEEE-cCcEEEEEecCCCCcccCcEEEEECCCCceE
Q 012184 137 LETMTWDA-VEVTQTPP--APRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS 194 (469)
Q Consensus 137 ~~t~~W~~-~~~~g~~p--~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~ 194 (469)
+.+++-.. +...+... ....-+.+.+. +++++|+..-. ..+.+.++|+.+.+-.
T Consensus 156 ~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~----~~~~VsVID~~t~kvv 213 (426)
T 3c75_H 156 PVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS----PAPAVGVVDLEGKTFD 213 (426)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS----SSCEEEEEETTTTEEE
T ss_pred CCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC----CCCeEEEEECCCCeEE
Confidence 99987543 32211100 00111233333 34578886321 1367999999887643
No 392
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=75.03 E-value=47 Score=29.88 Aligned_cols=145 Identities=12% Similarity=0.109 Sum_probs=71.3
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
++..++.|+.+ ..+.++|+.++.-...-. + ......++.+ ++.+++.|+.+. .+.+||+..
T Consensus 76 dg~~l~s~s~D------~~v~~wd~~~~~~~~~~~-~----h~~~v~~~~~~~~~~~l~s~s~D~------~i~vwd~~~ 138 (319)
T 3frx_A 76 DGAYALSASWD------KTLRLWDVATGETYQRFV-G----HKSDVMSVDIDKKASMIISGSRDK------TIKVWTIKG 138 (319)
T ss_dssp TSSEEEEEETT------SEEEEEETTTTEEEEEEE-C----CSSCEEEEEECTTSCEEEEEETTS------CEEEEETTS
T ss_pred CCCEEEEEeCC------CEEEEEECCCCCeeEEEc-c----CCCcEEEEEEcCCCCEEEEEeCCC------eEEEEECCC
Confidence 55666666643 238899998886432210 1 1111222233 356677776543 377888876
Q ss_pred CeEEEeeeCCCCCCCCCCceEEEEc------CcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEE
Q 012184 140 MTWDAVEVTQTPPAPRYDHSAALHA------NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT 213 (469)
Q Consensus 140 ~~W~~~~~~g~~p~~r~~~~~~~~~------~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~ 213 (469)
..-..+. +. ...-..+.... ++.+++.|+.+ ..+.++|+.+..-.... .+ .. ..-.+++.
T Consensus 139 ~~~~~~~--~h---~~~v~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~-~~--h~-~~v~~~~~ 204 (319)
T 3frx_A 139 QCLATLL--GH---NDWVSQVRVVPNEKADDDSVTIISAGND-----KMVKAWNLNQFQIEADF-IG--HN-SNINTLTA 204 (319)
T ss_dssp CEEEEEC--CC---SSCEEEEEECCC------CCEEEEEETT-----SCEEEEETTTTEEEEEE-CC--CC-SCEEEEEE
T ss_pred CeEEEEe--cc---CCcEEEEEEccCCCCCCCccEEEEEeCC-----CEEEEEECCcchhheee-cC--CC-CcEEEEEE
Confidence 5443332 11 00111111111 23355666544 35788898765543211 11 11 11112222
Q ss_pred E-CCEEEEEecCCCCCCcceEEEEECCCCc
Q 012184 214 I-DENWYIVGGGDNNNGCQETIVLNMTKLA 242 (469)
Q Consensus 214 ~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~ 242 (469)
. ++.+++.||.+ ..+.++|+.+..
T Consensus 205 sp~g~~l~s~~~d-----g~i~iwd~~~~~ 229 (319)
T 3frx_A 205 SPDGTLIASAGKD-----GEIMLWNLAAKK 229 (319)
T ss_dssp CTTSSEEEEEETT-----CEEEEEETTTTE
T ss_pred cCCCCEEEEEeCC-----CeEEEEECCCCc
Confidence 2 45677777743 257888987765
No 393
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=74.77 E-value=78 Score=32.29 Aligned_cols=152 Identities=7% Similarity=-0.033 Sum_probs=67.1
Q ss_pred ceEEEEECCCCe---EEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEE----CCCCeEEEeee--
Q 012184 79 MIVRFIDLETNL---CGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLD----LETMTWDAVEV-- 147 (469)
Q Consensus 79 ~~~~~~d~~t~~---W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d----~~t~~W~~~~~-- 147 (469)
..++.+|+.++. |..+.....+.........+.+ ++++++....... ....++++| +.++++..+..
T Consensus 224 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~--~~~~l~~~d~~~~~~~g~~~~~~~~~ 301 (719)
T 1z68_A 224 VRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQ--NVSVLSICDFREDWQTWDCPKTQEHI 301 (719)
T ss_dssp EEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESST--TEEEEEEEEECSSSSSEECCGGGEEE
T ss_pred eEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEecccc--CeEEEEEEcccCCCCCCceEEEEecc
Confidence 368888888765 2233210000001111222333 4566555221111 245689999 77776654431
Q ss_pred -CCCCCCCCCC---c-eEEEEcCc-EEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEE
Q 012184 148 -TQTPPAPRYD---H-SAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIV 221 (469)
Q Consensus 148 -~g~~p~~r~~---~-~~~~~~~~-~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~ 221 (469)
.+. ..... + ......|+ .+++....... ...++.+|+.+.....+.. + ... ....... ++..+++
T Consensus 302 ~~~~--~~~~~~~~~~~~~~spdg~~l~~~~~~~~g--~~~l~~~~~~~~~~~~lt~-~--~~~-v~~~~~~-d~~~i~~ 372 (719)
T 1z68_A 302 EESR--TGWAGGFFVSTPVFSYDAISYYKIFSDKDG--YKHIHYIKDTVENAIQITS-G--KWE-AINIFRV-TQDSLFY 372 (719)
T ss_dssp EECS--SSCSSSSSCCCCEECTTSSCEEEEEECTTS--CEEEEEESSCSTTCEECSC-S--SSC-EEEEEEE-CSSEEEE
T ss_pred cccC--CceEccccCCccEECCCCCeEEEEEEccCC--ceEEEEEECCCCceEeccc-C--ceE-EEEEEEE-eCCEEEE
Confidence 111 11111 0 22222243 34443222111 3579999998877655431 1 111 1112223 5544444
Q ss_pred ecCC--CCCCcceEEEEECCCC
Q 012184 222 GGGD--NNNGCQETIVLNMTKL 241 (469)
Q Consensus 222 GG~~--~~~~~~d~~~~d~~~~ 241 (469)
.+.. .......+|.+++...
T Consensus 373 ~~~~~~~~~~~~~l~~~~~~~g 394 (719)
T 1z68_A 373 SSNEFEEYPGRRNIYRISIGSY 394 (719)
T ss_dssp EESCGGGCTTCBEEEEEECSSS
T ss_pred EEecCCCCCceEEEEEEeCCCC
Confidence 4332 2223456888887544
No 394
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=74.75 E-value=24 Score=26.31 Aligned_cols=23 Identities=0% Similarity=0.268 Sum_probs=9.4
Q ss_pred hhhHhhhhhhhcchhhHHHHHHH
Q 012184 375 SRFREKIDEVNSTHSELSKELSS 397 (469)
Q Consensus 375 ~~l~~~~~~~~~~~~e~~~el~~ 397 (469)
.+++++++.+...++.++.++.+
T Consensus 11 ~~lq~~~~~l~~q~~~l~~~~~e 33 (107)
T 1fxk_A 11 QQLQQQAQAISVQKQTVEMQINE 33 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 395
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=74.62 E-value=42 Score=29.05 Aligned_cols=107 Identities=11% Similarity=0.114 Sum_probs=58.6
Q ss_pred ECCEEEEEccccCCCCCcceEEEEECCCC----eEEEee---cCC--CCCCC--CcceEEEE---ECCEEEEEeccCCCC
Q 012184 61 WGTKLLILGGHYKKSSDSMIVRFIDLETN----LCGVME---TSG--KVPVA--RGGHSVTL---VGSRLIIFGGEDRSR 126 (469)
Q Consensus 61 ~~~~iy~~GG~~~~~~~~~~~~~~d~~t~----~W~~~~---~~g--~~p~~--r~~~~~~~---~~~~lyi~GG~~~~~ 126 (469)
.++++|+|=|. .+|+||..++ ....-+ ..+ .+|.. ...--++. .++++|+|-|
T Consensus 69 ~~g~~~fFkg~--------~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG----- 135 (225)
T 3oyo_A 69 EASEAYVFSGN--------HSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKG----- 135 (225)
T ss_dssp STTEEEEEETT--------EEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEET-----
T ss_pred CCCeEEEEcCC--------EEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeC-----
Confidence 48999999763 3899976432 221111 011 12220 00222232 2579999965
Q ss_pred CccCcEEEEECCCCeEEEe-eeCC-CCCC------CCCCceEEEE-cCcEEEEEecCCCCcccCcEEEEECCC
Q 012184 127 KLLNDVHFLDLETMTWDAV-EVTQ-TPPA------PRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQT 190 (469)
Q Consensus 127 ~~~~~v~~~d~~t~~W~~~-~~~g-~~p~------~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~ 190 (469)
+..|+||..+.+...- .+.. ..|. +..--++... .++++|+|-| +..|+||..+
T Consensus 136 ---~~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG-------~~ywr~d~~~ 198 (225)
T 3oyo_A 136 ---NKYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG-------QNYVRIDFTP 198 (225)
T ss_dssp ---TEEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET-------TEEEEEECCT
T ss_pred ---CeEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC-------CEEEEEeCCc
Confidence 3489999877765431 1110 1111 2233344443 4789999988 5789999873
No 396
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=74.49 E-value=84 Score=32.50 Aligned_cols=104 Identities=11% Similarity=0.107 Sum_probs=58.8
Q ss_pred ccCcEEEEECCC--CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCC-----CcccCcEEEEECCC--------Cc
Q 012184 128 LLNDVHFLDLET--MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH-----SIFFNDLHVLDLQT--------NE 192 (469)
Q Consensus 128 ~~~~v~~~d~~t--~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~-----~~~~~~i~~~d~~~--------~~ 192 (469)
+.++++..+... ..|..+. .|+........ ++.+|+....+- ......+..+|+.+ ..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 339 (711)
T 4hvt_A 267 YNYDNYILDTKYKNLKLQKIN------MPSDATLQGSF-KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTS 339 (711)
T ss_dssp SCEEEEEEECSSSSCEEEECC------SCTTCEEEEEE-TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTT
T ss_pred CceeEEEEcCCCCCCcceEee------cCCcceEeeeE-CCEEEEEECcccccccccCCCCeEEEEECCccccccccccc
Confidence 467889888664 6777662 23322212333 677988764331 12346789999765 36
Q ss_pred eEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEE
Q 012184 193 WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWS 244 (469)
Q Consensus 193 W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~ 244 (469)
|..+-+ + -..+.-..+...++.+++..-. .....+.++|+.++.|.
T Consensus 340 ~~~~~~--~-~~~~~l~~~~~~~~~l~~~~~~---~~~~~l~~~~~~~g~~~ 385 (711)
T 4hvt_A 340 LKILFT--P-TANEVFNFISTTKDRVFLATYD---NVVAKVVTFTLENEQWT 385 (711)
T ss_dssp CEEEEC--C-CTTEEEEEEEECSSCEEEEEEE---TTEEEEEEECEETTEEC
T ss_pred ceEEEC--C-CCCCeEEEEEEECCEEEEEEEE---CCEEEEEEEECCCCceE
Confidence 886421 1 1122223444556776665321 12456889998877774
No 397
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=74.39 E-value=27 Score=27.99 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 012184 429 IENEVQILRQQKSA 442 (469)
Q Consensus 429 ~e~e~~~~~q~~~~ 442 (469)
+.....++.+++++
T Consensus 89 r~e~k~~l~~ql~q 102 (150)
T 4dci_A 89 LEEQKRNLLQQQAQ 102 (150)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333334444443
No 398
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=74.34 E-value=51 Score=29.96 Aligned_cols=145 Identities=14% Similarity=0.096 Sum_probs=68.2
Q ss_pred CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc
Q 012184 113 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE 192 (469)
Q Consensus 113 ~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~ 192 (469)
++.+++.|+.+ ..+.++|+.+.+....-. + ....-.++....++..++.||.+ ..+.++|+....
T Consensus 87 ~~~~l~s~s~D------~~v~lwd~~~~~~~~~~~-~---h~~~v~~v~~sp~~~~l~s~~~d-----~~i~~wd~~~~~ 151 (343)
T 2xzm_R 87 ENCFAISSSWD------KTLRLWDLRTGTTYKRFV-G---HQSEVYSVAFSPDNRQILSAGAE-----REIKLWNILGEC 151 (343)
T ss_dssp STTEEEEEETT------SEEEEEETTSSCEEEEEE-C---CCSCEEEEEECSSTTEEEEEETT-----SCEEEEESSSCE
T ss_pred CCCEEEEEcCC------CcEEEEECCCCcEEEEEc-C---CCCcEEEEEECCCCCEEEEEcCC-----CEEEEEeccCCc
Confidence 34555666543 348889998876433211 1 11111223333355566667654 357788876432
Q ss_pred eEeeeecCCCCCCCcceEEEEEC------------CEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCc
Q 012184 193 WSQPEIKGDLVTGRAGHAGITID------------ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGL 260 (469)
Q Consensus 193 W~~~~~~~~~p~~r~~~~~~~~~------------~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~ 260 (469)
-.... ...........+.+. +.+++.|+.+ ..+.+||.....-..+ ... ..
T Consensus 152 ~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~---~~h------~~ 214 (343)
T 2xzm_R 152 KFSSA---EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD-----GRLKVWNTNFQIRYTF---KAH------ES 214 (343)
T ss_dssp EEECC---TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETT-----SEEEEEETTTEEEEEE---ECC------SS
T ss_pred eeeee---cccCCCceeeeeeeccccccccccCCCCCEEEEEcCC-----CEEEEEcCCCceeEEE---cCc------cc
Confidence 22111 111111111122221 1456666643 2467777443221111 111 11
Q ss_pred ceEEEEEcCCcEEEEEeccCCCCCceEEEEECC
Q 012184 261 SVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK 293 (469)
Q Consensus 261 s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~ 293 (469)
.+..+...+++.+++.|+.++ .+.+||+.
T Consensus 215 ~v~~~~~s~~g~~l~sgs~dg----~v~iwd~~ 243 (343)
T 2xzm_R 215 NVNHLSISPNGKYIATGGKDK----KLLIWDIL 243 (343)
T ss_dssp CEEEEEECTTSSEEEEEETTC----EEEEEESS
T ss_pred cceEEEECCCCCEEEEEcCCC----eEEEEECC
Confidence 233444555667778888665 47788874
No 399
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=73.70 E-value=71 Score=31.32 Aligned_cols=181 Identities=9% Similarity=0.017 Sum_probs=86.1
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECCC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET 139 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~t 139 (469)
++..++.|+.++ .+..+|.....-..+. . +. ....++.+ ++..++.|+.+ ..+.+||...
T Consensus 314 ~~~~l~t~~~d~------~i~~w~~~~~~~~~~~---~-~~--~~v~~~~~s~~g~~l~~~~~d------g~v~~~~~~~ 375 (577)
T 2ymu_A 314 DGQTIASASDDK------TVKLWNRNGQHLQTLT---G-HS--SSVWGVAFSPDGQTIASASDD------KTVKLWNRNG 375 (577)
T ss_dssp TSSEEEEEETTS------CEEEEETTSCEEEEEC---C-CS--SCEEEEEECTTSSEEEEEETT------SEEEEEETTC
T ss_pred CCCEEEEEeCCC------eEEEEeCCCCeeEEEe---C-CC--CCEEEEEECCCCCEEEEEeCC------CEEEEEcCCC
Confidence 445555555332 2677787666544433 1 11 11122223 45566666543 2477788655
Q ss_pred CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEE
Q 012184 140 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENW 218 (469)
Q Consensus 140 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l 218 (469)
..-..+.. ...+ -.+++...++..++.|+.+ ..+.+||.....-..+. . .... -.+++.. ++.+
T Consensus 376 ~~~~~~~~---~~~~--v~~~~~s~dg~~l~~~~~d-----~~v~~~~~~~~~~~~~~---~-~~~~-v~~~~~s~d~~~ 440 (577)
T 2ymu_A 376 QLLQTLTG---HSSS--VRGVAFSPDGQTIASASDD-----KTVKLWNRNGQLLQTLT---G-HSSS-VWGVAFSPDDQT 440 (577)
T ss_dssp CEEEEEEC---CSSC--EEEEEECTTSSCEEEEETT-----SEEEEECTTCCEEEEEE---C-CSSC-EEEEEECTTSSE
T ss_pred CEEEEecC---CCCC--eEEEEECCCCCEEEEEeCC-----CEEEEEeCCCCEEEEec---C-CCCC-eEEEEECCCCCE
Confidence 54444331 1111 1122223355566666644 35778886443322221 1 1111 1122222 4566
Q ss_pred EEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECC
Q 012184 219 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK 293 (469)
Q Consensus 219 ~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~ 293 (469)
++.++.+ ..+.+||.+...-..+.... ..+..+...+++.+++.|+.++ .+.+||.+
T Consensus 441 l~~~~~d-----~~v~~w~~~~~~~~~~~~~~---------~~v~~~~~spd~~~las~~~d~----~i~iw~~~ 497 (577)
T 2ymu_A 441 IASASDD-----KTVKLWNRNGQLLQTLTGHS---------SSVRGVAFSPDGQTIASASDDK----TVKLWNRN 497 (577)
T ss_dssp EEEEETT-----SEEEEEETTSCEEEEEECCS---------SCEEEEEECTTSCEEEEEETTS----EEEEEETT
T ss_pred EEEEcCC-----CEEEEEECCCCEEEEEcCCC---------CCEEEEEEcCCCCEEEEEeCCC----EEEEEcCC
Confidence 7776643 24778887665444332111 1223344455667777777654 36667753
No 400
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=73.68 E-value=22 Score=25.50 Aligned_cols=8 Identities=25% Similarity=0.829 Sum_probs=2.9
Q ss_pred hHhhhhhh
Q 012184 377 FREKIDEV 384 (469)
Q Consensus 377 l~~~~~~~ 384 (469)
|++++..+
T Consensus 5 Lr~qi~~l 12 (86)
T 3swk_A 5 LRRQVDQL 12 (86)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 401
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=72.98 E-value=53 Score=29.47 Aligned_cols=199 Identities=10% Similarity=-0.014 Sum_probs=98.2
Q ss_pred CCcCeeeEEE-CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCcc
Q 012184 52 PMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLL 129 (469)
Q Consensus 52 ~r~~~~~~~~-~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~ 129 (469)
+.....++.. ++.||+.-- ....+++||+.+. ...... .+ ..-++++.. +++||+...... .
T Consensus 31 ~~~pegia~~~~g~lyv~d~------~~~~I~~~d~~g~-~~~~~~---~~--~~p~gia~~~dG~l~vad~~~~----~ 94 (306)
T 2p4o_A 31 NTFLENLASAPDGTIFVTNH------EVGEIVSITPDGN-QQIHAT---VE--GKVSGLAFTSNGDLVATGWNAD----S 94 (306)
T ss_dssp TCCEEEEEECTTSCEEEEET------TTTEEEEECTTCC-EEEEEE---CS--SEEEEEEECTTSCEEEEEECTT----S
T ss_pred CCCcceEEECCCCCEEEEeC------CCCeEEEECCCCc-eEEEEe---CC--CCceeEEEcCCCcEEEEeccCC----c
Confidence 3344444443 567888742 1234899998765 333321 11 122233332 467887643211 1
Q ss_pred CcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEee--eecC--CCCCC
Q 012184 130 NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP--EIKG--DLVTG 205 (469)
Q Consensus 130 ~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~--~~~~--~~p~~ 205 (469)
..++.||+.+++...+... +..+.....+...++.+|+... ..+.+|++|+.+..-... .... ..+..
T Consensus 95 ~~v~~~d~~~g~~~~~~~~---~~~~~~~g~~~~~~~~~~v~d~-----~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~ 166 (306)
T 2p4o_A 95 IPVVSLVKSDGTVETLLTL---PDAIFLNGITPLSDTQYLTADS-----YRGAIWLIDVVQPSGSIWLEHPMLARSNSES 166 (306)
T ss_dssp CEEEEEECTTSCEEEEEEC---TTCSCEEEEEESSSSEEEEEET-----TTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred ceEEEEcCCCCeEEEEEeC---CCccccCcccccCCCcEEEEEC-----CCCeEEEEeCCCCcEeEEEECCccccccccC
Confidence 2488899888887766532 3333333444444566777532 125799999876422111 1000 01111
Q ss_pred --CcceEEEEECCEEEEEecCCCCCCcceEEEEECCC-CcE---EEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEecc
Q 012184 206 --RAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTK-LAW---SILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGY 279 (469)
Q Consensus 206 --r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~-~~W---~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~ 279 (469)
.....+..-++.||+.-- ..+.+++||+.. ... ..+... ..| .. +++++++.|||.-..
T Consensus 167 ~~~~pngis~dg~~lyv~d~-----~~~~I~~~~~~~~g~~~~~~~~~~~--~~P-----~g---i~vd~dG~l~va~~~ 231 (306)
T 2p4o_A 167 VFPAANGLKRFGNFLYVSNT-----EKMLLLRIPVDSTDKPGEPEIFVEQ--TNI-----DD---FAFDVEGNLYGATHI 231 (306)
T ss_dssp CSCSEEEEEEETTEEEEEET-----TTTEEEEEEBCTTSCBCCCEEEEES--CCC-----SS---EEEBTTCCEEEECBT
T ss_pred CCCcCCCcCcCCCEEEEEeC-----CCCEEEEEEeCCCCCCCccEEEecc--CCC-----CC---eEECCCCCEEEEeCC
Confidence 111223333557888743 235789999864 221 111111 111 11 233445567776432
Q ss_pred CCCCCceEEEEECC
Q 012184 280 NGKYNNEVFVMRLK 293 (469)
Q Consensus 280 ~~~~~~~~~~~d~~ 293 (469)
.+.+.+||+.
T Consensus 232 ----~~~V~~~~~~ 241 (306)
T 2p4o_A 232 ----YNSVVRIAPD 241 (306)
T ss_dssp ----TCCEEEECTT
T ss_pred ----CCeEEEECCC
Confidence 2358888875
No 402
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=72.60 E-value=36 Score=27.46 Aligned_cols=23 Identities=13% Similarity=0.333 Sum_probs=8.7
Q ss_pred hHhhhhhhhcchhhHHHHHHHHH
Q 012184 377 FREKIDEVNSTHSELSKELSSVQ 399 (469)
Q Consensus 377 l~~~~~~~~~~~~e~~~el~~~~ 399 (469)
+..++++++..+.+++..+...+
T Consensus 55 L~~~~~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 55 LEKAKQALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 403
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=71.99 E-value=28 Score=30.01 Aligned_cols=142 Identities=13% Similarity=0.146 Sum_probs=72.7
Q ss_pred ECCEEEEEccccCCCCCcceEEEEECCCCeEE--EeecCC-CCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEEC
Q 012184 61 WGTKLLILGGHYKKSSDSMIVRFIDLETNLCG--VMETSG-KVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDL 137 (469)
Q Consensus 61 ~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~--~~~~~g-~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~ 137 (469)
.++++|+|=|. .+|+++.....+. .+...= .+|. .... +...++++|+|-| +.+|+|+.
T Consensus 27 ~~g~~yfFkg~--------~~Wr~~~~~~~~~p~~Is~~wpgLP~-~IDA-A~~~~~~~yfFkG--------~~yw~~~~ 88 (219)
T 1hxn_A 27 NHGATYVFSGS--------HYWRLDTNRDGWHSWPIAHQWPQGPS-TVDA-AFSWEDKLYLIQD--------TKVYVFLT 88 (219)
T ss_dssp TTSCEEEEETT--------EEEESSSSSCTTCCEEGGGTCTTSCS-SCSE-EEEETTEEEEEET--------TEEEEEEC
T ss_pred CCCcEEEEeCC--------EEEEEcCCCCCCCceEhhhhccCCCC-CccE-EEEECCcEEEecC--------CEEEEEeC
Confidence 47889999663 2677765432221 111110 1232 2232 3334899999955 34888886
Q ss_pred CCC-eE-----EEeee-CCCCCCC--CC-CceEEEE-cCcEEEEEecCCCCcccCcEEEEECCCC---ceEeeeecCCCC
Q 012184 138 ETM-TW-----DAVEV-TQTPPAP--RY-DHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTN---EWSQPEIKGDLV 203 (469)
Q Consensus 138 ~t~-~W-----~~~~~-~g~~p~~--r~-~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~---~W~~~~~~~~~p 203 (469)
.++ +- +.+.. .| +|.. .. --++... .++++|+|-| +..|+||..+. .|... +.+
T Consensus 89 ~~~~~~~~gyPk~i~~~~G-~p~~~~~~~IDAA~~~~~~gk~yfFkG-------~~ywr~d~~~~P~~i~~~~----~g~ 156 (219)
T 1hxn_A 89 KGGYTLVNGYPKRLEKELG-SPPVISLEAVDAAFVCPGSSRLHIMAG-------RRLWWLDLKSGAQATWTEL----PWP 156 (219)
T ss_dssp SSSCEECTTCCEEHHHHHC-CCSSCCCSCCCEEECCTTCCEEEEEET-------TEEEEEEGGGGGGCCCEEE----CCS
T ss_pred CCCceecCCCCeehhhccC-CCCcccccccceeEEecCCCEEEEEeC-------CEEEEEeCCCCceEhhhcC----CCC
Confidence 532 11 11110 12 2322 11 2223322 4678999988 57899997542 22221 112
Q ss_pred CCCcceEEEE------------ECCEEEEEecCCCCCCcceEEEEECCC
Q 012184 204 TGRAGHAGIT------------IDENWYIVGGGDNNNGCQETIVLNMTK 240 (469)
Q Consensus 204 ~~r~~~~~~~------------~~~~l~v~GG~~~~~~~~d~~~~d~~~ 240 (469)
..... ++.. .++.+|+|-| +..|+||..+
T Consensus 157 p~~vd-Aa~~~~~~~~~~~~~~~~~~~YFFkg-------~~y~r~~~~~ 197 (219)
T 1hxn_A 157 HEKVD-GALCMEKPLGPNSCSTSGPNLYLIHG-------PNLYCYRHVD 197 (219)
T ss_dssp CSCCS-EEEEESSCSSSCCSCSSSCEEEEEET-------TEEEEESSHH
T ss_pred CCCcC-EEEEccccccccceeccCCeEEEEEC-------CEEEEEeCCc
Confidence 22233 3333 3467899877 3678888754
No 404
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=71.84 E-value=60 Score=29.61 Aligned_cols=200 Identities=10% Similarity=0.044 Sum_probs=100.8
Q ss_pred CeeeEEECCEEEEEccccCCCCCcceEEEEECC-CCeEEEeecCCCCCCCCcceEEEE-ECCEEEEEeccCCCCCccCcE
Q 012184 55 DHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLE-TNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDV 132 (469)
Q Consensus 55 ~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~-t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyi~GG~~~~~~~~~~v 132 (469)
..+++...+.+|+.|. .. .+++ ..+ -.+|+.+......|. ..+.++. -++.+|+.|... .+
T Consensus 82 ~~~i~~~~~~~~~~g~-~g------~i~~-S~DgG~tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~g-------~v 144 (327)
T 2xbg_A 82 FNSVSFQGNEGWIVGE-PP------IMLH-TTDGGQSWSQIPLDPKLPG--SPRLIKALGNGSAEMITNVG-------AI 144 (327)
T ss_dssp EEEEEEETTEEEEEEE-TT------EEEE-ESSTTSSCEECCCCTTCSS--CEEEEEEEETTEEEEEETTC-------CE
T ss_pred EEEEEecCCeEEEEEC-CC------eEEE-ECCCCCCceECccccCCCC--CeEEEEEECCCCEEEEeCCc-------cE
Confidence 3445555778888752 11 2444 333 457999863211221 2233443 357888876421 25
Q ss_pred EEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECC-CCceEeeeecCCCCCCCcceEE
Q 012184 133 HFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ-TNEWSQPEIKGDLVTGRAGHAG 211 (469)
Q Consensus 133 ~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~-~~~W~~~~~~~~~p~~r~~~~~ 211 (469)
++-.=.-.+|+.+.. +.+...+.++...++.+|++|.. ..+++-+-. ..+|..+.. +.+...+.+
T Consensus 145 ~~S~DgG~tW~~~~~----~~~~~~~~~~~~~~~~~~~~g~~------G~~~~S~d~gG~tW~~~~~----~~~~~~~~~ 210 (327)
T 2xbg_A 145 YRTKDSGKNWQALVQ----EAIGVMRNLNRSPSGEYVAVSSR------GSFYSTWEPGQTAWEPHNR----TTSRRLHNM 210 (327)
T ss_dssp EEESSTTSSEEEEEC----SCCCCEEEEEECTTSCEEEEETT------SSEEEEECTTCSSCEEEEC----CSSSCEEEE
T ss_pred EEEcCCCCCCEEeec----CCCcceEEEEEcCCCcEEEEECC------CcEEEEeCCCCCceeECCC----CCCCcccee
Confidence 544333568998863 22333445555456667766532 235554322 568998742 334444555
Q ss_pred EEE-CCEEEEEecCCCCCCcceEEEEECC-CCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEE
Q 012184 212 ITI-DENWYIVGGGDNNNGCQETIVLNMT-KLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFV 289 (469)
Q Consensus 212 ~~~-~~~l~v~GG~~~~~~~~d~~~~d~~-~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~ 289 (469)
+.. ++.+|+++.. ..+++.+.. -..|+.+.... .+. +..+..+...+++.+|++|+.. .+++
T Consensus 211 ~~~~~g~~~~~~~~------G~~~~s~~D~G~tW~~~~~~~--~~~---~~~~~~v~~~~~~~~~~~g~~g-----~i~~ 274 (327)
T 2xbg_A 211 GFTPDGRLWMIVNG------GKIAFSDPDNSENWGELLSPL--RRN---SVGFLDLAYRTPNEVWLAGGAG-----ALLC 274 (327)
T ss_dssp EECTTSCEEEEETT------TEEEEEETTEEEEECCCBCTT--SSC---CSCEEEEEESSSSCEEEEESTT-----CEEE
T ss_pred EECCCCCEEEEeCC------ceEEEecCCCCCeeEeccCCc--ccC---CcceEEEEecCCCEEEEEeCCC-----eEEE
Confidence 443 4677777541 124444333 56788754210 111 1223333344456788887622 2443
Q ss_pred EECCCCCCCCcc
Q 012184 290 MRLKPRDIPRPK 301 (469)
Q Consensus 290 ~d~~~~~w~~~~ 301 (469)
-.-...+|....
T Consensus 275 S~DgG~tW~~~~ 286 (327)
T 2xbg_A 275 SQDGGQTWQQDV 286 (327)
T ss_dssp ESSTTSSCEECG
T ss_pred eCCCCcccEEcC
Confidence 332356787554
No 405
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=71.62 E-value=82 Score=32.46 Aligned_cols=153 Identities=6% Similarity=-0.084 Sum_probs=79.6
Q ss_pred ECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEE--ECCEEEEEeccCCCCCccCcEEEEECC
Q 012184 61 WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL--VGSRLIIFGGEDRSRKLLNDVHFLDLE 138 (469)
Q Consensus 61 ~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~--~~~~lyi~GG~~~~~~~~~~v~~~d~~ 138 (469)
.++.||+.-. ..+.|+++++....-..+...+ +..+ .++++ .++.||+.-- . ....|+++++.
T Consensus 463 ~~g~LY~tD~------~~~~I~v~d~dg~~~~~l~~~~-~~~P---~giavDp~~g~ly~td~-~----~~~~I~~~~~d 527 (699)
T 1n7d_A 463 IHSNIYWTDS------VLGTVSVADTKGVKRKTLFREQ-GSKP---RAIVVDPVHGFMYWTDW-G----TPAKIKKGGLN 527 (699)
T ss_dssp SSSBCEECCT------TTSCEEEEBSSSCCEEEECCCS-SCCC---CCEECCSSSSCCEECCC-S----SSCCEEBCCSS
T ss_pred eCCcEEEEec------cCCeEEEEecCCCceEEEEeCC-CCCc---ceEEEccCCCcEEEccc-C----CCCeEEEEeCC
Confidence 4678888632 1234899998876545443221 1112 12222 2567776531 1 12568888876
Q ss_pred CCeEEEeeeCCCCCCCCCCceEEEE-cCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCE
Q 012184 139 TMTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN 217 (469)
Q Consensus 139 t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~ 217 (469)
...-+.+.. ..+..| .++++. .+++||+.-.. .+.|+++++....-..+... .......+++++.++.
T Consensus 528 G~~~~~l~~-~~l~~P---nGlavd~~~~~LY~aD~~-----~~~I~~~d~dG~~~~~~~~~--~~~~~~P~glavd~~~ 596 (699)
T 1n7d_A 528 GVDIYSLVT-ENIQWP---NGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILED--EKRLAHPFSLAVFEDK 596 (699)
T ss_dssp SCCCCEESC-SSCSSC---CCEEECTTTCCEEEEETT-----TTEEEEECSSSSCCEEECCC--SSSCSSCCCCEEETTE
T ss_pred CCCeeEEEe-CCCCCc---cEEEEeccCCEEEEEecC-----CCeEEEEccCCCceEEEEec--CCcCCCceEeEEECCE
Confidence 543322211 111112 223332 25678886532 36799999875443333211 1111233455667888
Q ss_pred EEEEecCCCCCCcceEEEEECCCCcEE
Q 012184 218 WYIVGGGDNNNGCQETIVLNMTKLAWS 244 (469)
Q Consensus 218 l~v~GG~~~~~~~~d~~~~d~~~~~W~ 244 (469)
||+.-. ..+.|.++|..+..-.
T Consensus 597 lywtd~-----~~~~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 597 VFWTDI-----INEAIFSANRLTGSDV 618 (699)
T ss_dssp EEEECS-----TTTCEEEEETTTEEEE
T ss_pred EEEEeC-----CCCeEEEEEccCCCce
Confidence 988843 2357889998665543
No 406
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=70.92 E-value=17 Score=29.26 Aligned_cols=14 Identities=7% Similarity=0.278 Sum_probs=5.5
Q ss_pred hhhhhhHhhhhhhh
Q 012184 372 TENSRFREKIDEVN 385 (469)
Q Consensus 372 ~~~~~l~~~~~~~~ 385 (469)
++++.|...+-..+
T Consensus 71 kqIe~LIdsLPg~~ 84 (151)
T 1yke_B 71 RQINKLIDSLPGVD 84 (151)
T ss_dssp HHHHHHHHHCTTSS
T ss_pred HHHHHHHHhCCCCC
Confidence 33444443333333
No 407
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=70.82 E-value=32 Score=32.76 Aligned_cols=11 Identities=9% Similarity=-0.121 Sum_probs=4.4
Q ss_pred HHHHHHhHHHH
Q 012184 353 IDAIKEDKRVL 363 (469)
Q Consensus 353 ~~~l~~~~~~~ 363 (469)
+..|+....++
T Consensus 40 l~~LE~~l~el 50 (409)
T 1m1j_C 40 LLEIEGLLQQA 50 (409)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444433333
No 408
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=70.77 E-value=24 Score=24.69 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=25.0
Q ss_pred hhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 012184 376 RFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQK 421 (469)
Q Consensus 376 ~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~ 421 (469)
.|-+++-.+.-...+++.|..+.+.+|..-++.+..+++++++...
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ 68 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDA 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHH
Confidence 4444555555555556666666666665555555555555444433
No 409
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=70.70 E-value=30 Score=28.65 Aligned_cols=18 Identities=28% Similarity=0.154 Sum_probs=8.1
Q ss_pred hhhHHHHHHHHHHHHHHh
Q 012184 388 HSELSKELSSVQGQLVAE 405 (469)
Q Consensus 388 ~~e~~~el~~~~~~l~~~ 405 (469)
..++.+++...+.+++.+
T Consensus 87 ~~~Lr~ql~akr~EL~aL 104 (175)
T 3lay_A 87 TSALRQQLISKRYEYNAL 104 (175)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444444
No 410
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=70.38 E-value=31 Score=25.68 Aligned_cols=14 Identities=7% Similarity=0.192 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 012184 433 VQILRQQKSAFEQE 446 (469)
Q Consensus 433 ~~~~~q~~~~~~~~ 446 (469)
+..+..++..++.+
T Consensus 81 i~~le~~~~~~~~~ 94 (107)
T 1fxk_A 81 EKTIERQEERVMKK 94 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 411
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=70.27 E-value=8.8 Score=23.81 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=11.0
Q ss_pred HHhhhHHHHHHHHHHHHHHH
Q 012184 424 ESSQTIENEVQILRQQKSAF 443 (469)
Q Consensus 424 ~~~~~~e~e~~~~~q~~~~~ 443 (469)
+.+..||+|++.+++++++.
T Consensus 6 EEILRLErEIE~Lqrqke~~ 25 (51)
T 2lw9_A 6 EEILRLEKEIEDLQRMKEQQ 25 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445666666666666543
No 412
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=69.99 E-value=9.1 Score=24.43 Aligned_cols=17 Identities=41% Similarity=0.372 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhhhhccc
Q 012184 440 KSAFEQEMERATSVQTQ 456 (469)
Q Consensus 440 ~~~~~~~~~~~~~~q~q 456 (469)
-...|+|.++++.+.+|
T Consensus 34 c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 34 CSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444333
No 413
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=69.96 E-value=1e+02 Score=31.67 Aligned_cols=105 Identities=10% Similarity=-0.016 Sum_probs=50.1
Q ss_pred eEEEEECCCCeEEEeecCCCCCC-CCcc--eEEEEECCEEEEEeccCC---CCCccCcEEEEECCCCeEEEeeeCCCCCC
Q 012184 80 IVRFIDLETNLCGVMETSGKVPV-ARGG--HSVTLVGSRLIIFGGEDR---SRKLLNDVHFLDLETMTWDAVEVTQTPPA 153 (469)
Q Consensus 80 ~~~~~d~~t~~W~~~~~~g~~p~-~r~~--~~~~~~~~~lyi~GG~~~---~~~~~~~v~~~d~~t~~W~~~~~~g~~p~ 153 (469)
.++.||+.++.=..+-....... .... ++. .-+++.++++.... ......++++||+.+++...+.. .+.
T Consensus 37 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~---~~~ 112 (740)
T 4a5s_A 37 NILVFNAEYGNSSVFLENSTFDEFGHSINDYSI-SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEER---IPN 112 (740)
T ss_dssp EEEEEETTTCCEEEEECTTTTTTCCSCCCEEEE-CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC---CCT
T ss_pred cEEEEECCCCceEEEEechhhhhhcccccceEE-CCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEccc---CCC
Confidence 48999999988655532111110 1111 111 12444334443221 11234678999999998655431 111
Q ss_pred CCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEee
Q 012184 154 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP 196 (469)
Q Consensus 154 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~ 196 (469)
.......-.|++.++|+. + ++||+.|+.++.-..+
T Consensus 113 --~~~~~~~SPdG~~la~~~-~-----~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 113 --NTQWVTWSPVGHKLAYVW-N-----NDIYVKIEPNLPSYRI 147 (740)
T ss_dssp --TEEEEEECSSTTCEEEEE-T-----TEEEEESSTTSCCEEC
T ss_pred --cceeeEECCCCCEEEEEE-C-----CeEEEEECCCCceEEE
Confidence 111222222443444432 1 4677777766654443
No 414
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=69.91 E-value=13 Score=29.78 Aligned_cols=31 Identities=13% Similarity=0.028 Sum_probs=12.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Q 012184 398 VQGQLVAERSRCFKLEAQIAELQKMLESSQT 428 (469)
Q Consensus 398 ~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~ 428 (469)
++.+....++++.+.+++++||..|.-..+.
T Consensus 10 Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafkn 40 (155)
T 2aze_A 10 LEVERQRRLERIKQKQSQLQELILQQIAFKN 40 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444333333
No 415
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=69.62 E-value=14 Score=35.42 Aligned_cols=35 Identities=14% Similarity=0.050 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 012184 390 ELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE 424 (469)
Q Consensus 390 e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~ 424 (469)
+++.|+.+++++..+++++..+++.+++++.+++.
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 41 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLF 41 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555554444444444444444444444443
No 416
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=69.62 E-value=23 Score=27.79 Aligned_cols=14 Identities=7% Similarity=0.278 Sum_probs=5.5
Q ss_pred hhhhhhHhhhhhhh
Q 012184 372 TENSRFREKIDEVN 385 (469)
Q Consensus 372 ~~~~~l~~~~~~~~ 385 (469)
++++.|...+-..+
T Consensus 71 kqIe~LIdsLP~~~ 84 (132)
T 1ykh_B 71 RQINKLIDSLPGVD 84 (132)
T ss_dssp HHHHHHHHHSTTTT
T ss_pred HHHHHHHHhCCCCC
Confidence 33444443333333
No 417
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=69.46 E-value=5.8 Score=34.76 Aligned_cols=12 Identities=8% Similarity=0.149 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 012184 392 SKELSSVQGQLV 403 (469)
Q Consensus 392 ~~el~~~~~~l~ 403 (469)
++++..+..++.
T Consensus 60 ~~ql~~L~arNe 71 (251)
T 3m9b_A 60 EARIDSLAARNS 71 (251)
T ss_dssp HHHHHHHTTTHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 418
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=68.98 E-value=32 Score=29.53 Aligned_cols=10 Identities=20% Similarity=0.208 Sum_probs=3.7
Q ss_pred HHHHHHHHhh
Q 012184 418 ELQKMLESSQ 427 (469)
Q Consensus 418 e~~~~l~~~~ 427 (469)
|+..+++..+
T Consensus 186 eKK~KIR~lq 195 (213)
T 1ik9_A 186 EKKTKIRSLH 195 (213)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 3333333333
No 419
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=68.93 E-value=29 Score=24.77 Aligned_cols=23 Identities=26% Similarity=0.121 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 012184 429 IENEVQILRQQKSAFEQEMERAT 451 (469)
Q Consensus 429 ~e~e~~~~~q~~~~~~~~~~~~~ 451 (469)
+-+|.+++..-|-+++-++.-.+
T Consensus 52 q~~EYq~LlnvK~~Ld~EIatYR 74 (84)
T 1gk4_A 52 HLREYQDLLNVKMALDIEIATYR 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Confidence 34566666666667777764333
No 420
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=68.69 E-value=77 Score=29.63 Aligned_cols=194 Identities=10% Similarity=-0.008 Sum_probs=100.4
Q ss_pred ceEEEEccC--CceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE---CCEEEEEccccCCCCCcceEEEEECCCCe
Q 012184 16 VVMVFDLRS--LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW---GTKLLILGGHYKKSSDSMIVRFIDLETNL 90 (469)
Q Consensus 16 ~~~~~d~~~--~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~---~~~iy~~GG~~~~~~~~~~~~~~d~~t~~ 90 (469)
.++.|+... .+|..+.+. +....-++++.. .+.||+.+. ..+ .-.-+++.+-...+
T Consensus 32 Gl~~~~~~~~g~~W~~~~~~----------------~~~~~v~~i~~dp~~~~~l~~g~~-~g~--~g~gl~~s~D~G~t 92 (394)
T 3b7f_A 32 GAWFLASDPARRTWELRGPV----------------FLGHTIHHIVQDPREPERMLMAAR-TGH--LGPTVFRSDDGGGN 92 (394)
T ss_dssp EEEEEEECTTSCSEEEEEEE----------------STTSEEEEEEECSSSTTCEEEEEE-C----CCEEEEEESSTTSC
T ss_pred ceEEEECCCCCCCceECCcc----------------CCCCceEEEEECCCCCCeEEEEec-CCC--CCccEEEeCCCCCC
Confidence 466777654 689987532 222334455544 456777653 221 11237777666778
Q ss_pred EEEeecCCCCCCC--C-----cce--EEEEE----CCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCC----
Q 012184 91 CGVMETSGKVPVA--R-----GGH--SVTLV----GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA---- 153 (469)
Q Consensus 91 W~~~~~~g~~p~~--r-----~~~--~~~~~----~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~---- 153 (469)
|+.+.....+|.. + ... +++.. .+.||+.+. ..-+++.+-...+|+.+......|.
T Consensus 93 W~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~-------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~ 165 (394)
T 3b7f_A 93 WTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS-------PQGLFRSTDHGASWEPVAGFNDHPMRRAW 165 (394)
T ss_dssp CEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE-------TTEEEEESSTTSBCEECHHHHTCTTHHHH
T ss_pred ceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEec-------CCcEEEEcCCCCCeEECcCccCCcccccc
Confidence 9988632111211 1 111 22222 356766432 2347888777789998753111111
Q ss_pred ----------CCCCceEEEE--cCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecC---CCCCC-----CcceEEEE
Q 012184 154 ----------PRYDHSAALH--ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKG---DLVTG-----RAGHAGIT 213 (469)
Q Consensus 154 ----------~r~~~~~~~~--~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~---~~p~~-----r~~~~~~~ 213 (469)
....+++++. +.+.||+.... ..+++.+-...+|+.+.... .+|.+ ...+.++.
T Consensus 166 ~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~ 239 (394)
T 3b7f_A 166 TGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSS------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQ 239 (394)
T ss_dssp HCCC----CCCCEEEEEEECTTCTTCEEEEEET------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEE
T ss_pred ccccccCCCCCCceeEEEECCCCCCEEEEEECC------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEE
Confidence 1112333332 13457765432 23777776778899874211 11211 22344444
Q ss_pred EC---CEEEEEecCCCCCCcceEEEEECCCCcEEEecc
Q 012184 214 ID---ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 248 (469)
Q Consensus 214 ~~---~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~ 248 (469)
.. +.+|+..+ ..+++.+-....|+.+..
T Consensus 240 ~~~~~~~l~vg~~-------~gl~~s~D~G~tW~~~~~ 270 (394)
T 3b7f_A 240 HPAAPDILYQQNH-------CGIYRMDRREGVWKRIGD 270 (394)
T ss_dssp CSSSTTEEEEEET-------TEEEEEETTTTEEECGGG
T ss_pred CCCCCCEEEEEcC-------CeEEEeCCCCCcceECCC
Confidence 32 45665322 348888888899998753
No 421
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=68.22 E-value=79 Score=29.60 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=20.5
Q ss_pred EEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEee
Q 012184 160 AALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP 196 (469)
Q Consensus 160 ~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~ 196 (469)
++...++..++.|+.+ ..+.+||+.+..-..+
T Consensus 348 ~~~s~~~~~l~s~s~d-----g~v~iwd~~~~~~~~~ 379 (447)
T 3dw8_B 348 CCWNGSDSVVMTGSYN-----NFFRMFDRNTKRDITL 379 (447)
T ss_dssp EEECTTSSEEEEECST-----TEEEEEETTTCCEEEE
T ss_pred EEECCCCCEEEEeccC-----CEEEEEEcCCCcceee
Confidence 4443455566777654 4688999988776544
No 422
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=67.90 E-value=30 Score=25.86 Aligned_cols=11 Identities=18% Similarity=0.335 Sum_probs=4.2
Q ss_pred hhHHHHHHHHH
Q 012184 406 RSRCFKLEAQI 416 (469)
Q Consensus 406 ~~~~~~~~~~~ 416 (469)
+.++.++++++
T Consensus 75 q~KiaeLKrqL 85 (113)
T 4fi5_A 75 QAKIDELKRQL 85 (113)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 423
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=67.89 E-value=9.1 Score=21.77 Aligned_cols=27 Identities=7% Similarity=0.179 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 012184 426 SQTIENEVQILRQQKSAFEQEMERATS 452 (469)
Q Consensus 426 ~~~~e~e~~~~~q~~~~~~~~~~~~~~ 452 (469)
+.++|..++++..++..++.|+.+++.
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 445666666666666666666655443
No 424
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=67.64 E-value=76 Score=29.15 Aligned_cols=69 Identities=7% Similarity=-0.029 Sum_probs=33.1
Q ss_pred EEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECC-EEEEEeccCCCCCccCcEEEEECC-CCeEE
Q 012184 66 LILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLE-TMTWD 143 (469)
Q Consensus 66 y~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyi~GG~~~~~~~~~~v~~~d~~-t~~W~ 143 (469)
+++|++.... .-.++.+|+.+++.+.+............+.+..-++ .||+.. .+ .+.+|++. +++..
T Consensus 5 ~~vg~~~~~~--~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~-~~-------~v~~~~~~~~g~~~ 74 (365)
T 1jof_A 5 LMIGTWTPPG--AIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAA-MK-------KWSSFAVKSPTEIV 74 (365)
T ss_dssp EEEEESSSSC--EEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEE-BT-------EEEEEEEEETTEEE
T ss_pred EEEEEccCCC--cEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEc-cc-------eEEEEEECCCCCEE
Confidence 4556665321 1224556788898877653100011111222222234 465443 22 58888876 66654
Q ss_pred E
Q 012184 144 A 144 (469)
Q Consensus 144 ~ 144 (469)
.
T Consensus 75 ~ 75 (365)
T 1jof_A 75 H 75 (365)
T ss_dssp E
T ss_pred E
Confidence 3
No 425
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=67.49 E-value=34 Score=25.08 Aligned_cols=22 Identities=0% Similarity=-0.079 Sum_probs=8.5
Q ss_pred hhhhhhcchhhHHHHHHHHHHH
Q 012184 380 KIDEVNSTHSELSKELSSVQGQ 401 (469)
Q Consensus 380 ~~~~~~~~~~e~~~el~~~~~~ 401 (469)
++..++..+..++..+.+++..
T Consensus 13 ~~~~Lq~~~~~LE~~l~e~E~~ 34 (95)
T 3mov_A 13 LYFQGQKESRACLERIQELEDL 34 (95)
T ss_dssp -----CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555554443
No 426
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=66.78 E-value=17 Score=26.17 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc
Q 012184 428 TIENEVQILRQQKSAFEQEMERATSVQTQGSGG 460 (469)
Q Consensus 428 ~~e~e~~~~~q~~~~~~~~~~~~~~~q~q~~~~ 460 (469)
.|++|.+.|+.++++++.++..+.....|..++
T Consensus 47 ~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 47 ELTAENERLQKKVEQLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence 444444555555555555555444444444443
No 427
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=66.60 E-value=12 Score=36.58 Aligned_cols=18 Identities=11% Similarity=0.302 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012184 430 ENEVQILRQQKSAFEQEM 447 (469)
Q Consensus 430 e~e~~~~~q~~~~~~~~~ 447 (469)
.+++.++.+++..+++++
T Consensus 84 ~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 84 SNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333434444443
No 428
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=66.50 E-value=86 Score=29.37 Aligned_cols=147 Identities=10% Similarity=0.015 Sum_probs=79.4
Q ss_pred ECCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE--CCEEEEEeccCCCCCccCcEEEEECC
Q 012184 61 WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLE 138 (469)
Q Consensus 61 ~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyi~GG~~~~~~~~~~v~~~d~~ 138 (469)
.++.||+.-.. .+.++++++....-..+... .+..| .++++- ++.||+.--.. ...|+++++.
T Consensus 169 ~~g~lY~~d~~------~~~I~~~~~dg~~~~~l~~~-~l~~P---~giavdp~~g~ly~td~~~-----~~~I~r~~~d 233 (386)
T 3v65_B 169 VHDKLYWTDSG------TSRIEVANLDGAHRKVLLWQ-SLEKP---RAIALHPMEGTIYWTDWGN-----TPRIEASSMD 233 (386)
T ss_dssp TTTEEEEEETT------TTEEEECBTTSCSCEEEECS-SCSCE---EEEEEETTTTEEEEEECSS-----SCEEEEEETT
T ss_pred CCCeEEEEcCC------CCeEEEEeCCCCceEEeecC-CCCCC---cEEEEEcCCCeEEEeccCC-----CCEEEEEeCC
Confidence 47889887432 23588888875543444321 11111 233333 57888863211 3569999987
Q ss_pred CCeEEEeeeCCCCCCCCCCceEEEE-cCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCE
Q 012184 139 TMTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN 217 (469)
Q Consensus 139 t~~W~~~~~~g~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~ 217 (469)
...-..+... .+..| .++++. .+++||+.-. ..+.|+++|+....-..+.. ... ....++++.++.
T Consensus 234 G~~~~~~~~~-~~~~P---nGlavd~~~~~lY~aD~-----~~~~I~~~d~dG~~~~~~~~-~~~---~~P~giav~~~~ 300 (386)
T 3v65_B 234 GSGRRIIADT-HLFWP---NGLTIDYAGRRMYWVDA-----KHHVIERANLDGSHRKAVIS-QGL---PHPFAITVFEDS 300 (386)
T ss_dssp SCSCEEEECS-SCSCE---EEEEEEGGGTEEEEEET-----TTTEEEEECTTSCSCEEEEC-SSC---SSEEEEEEETTE
T ss_pred CCCcEEEEEC-CCCCe---eeEEEeCCCCEEEEEEC-----CCCEEEEEeCCCCeeEEEEE-CCC---CCceEEEEECCE
Confidence 6543333211 11111 233443 3678998743 23679999987543333221 112 223456667889
Q ss_pred EEEEecCCCCCCcceEEEEECCC
Q 012184 218 WYIVGGGDNNNGCQETIVLNMTK 240 (469)
Q Consensus 218 l~v~GG~~~~~~~~d~~~~d~~~ 240 (469)
+|+.--. ...+.++|..+
T Consensus 301 ly~td~~-----~~~V~~~~~~~ 318 (386)
T 3v65_B 301 LYWTDWH-----TKSINSANKFT 318 (386)
T ss_dssp EEEEETT-----TTEEEEEETTT
T ss_pred EEEeeCC-----CCeEEEEECCC
Confidence 9988531 34688888533
No 429
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=66.39 E-value=66 Score=31.62 Aligned_cols=16 Identities=13% Similarity=0.470 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 012184 432 EVQILRQQKSAFEQEM 447 (469)
Q Consensus 432 e~~~~~q~~~~~~~~~ 447 (469)
++.++.+++..+++++
T Consensus 131 ~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 131 QLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 430
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=66.27 E-value=17 Score=26.74 Aligned_cols=18 Identities=11% Similarity=0.028 Sum_probs=7.2
Q ss_pred hhHhhhhhhhcchhhHHH
Q 012184 376 RFREKIDEVNSTHSELSK 393 (469)
Q Consensus 376 ~l~~~~~~~~~~~~e~~~ 393 (469)
.++.+.+.++..+.+++.
T Consensus 16 ~Lq~~~~~LE~~l~e~E~ 33 (95)
T 3mov_A 16 QGQKESRACLERIQELED 33 (95)
T ss_dssp --CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 431
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=66.15 E-value=87 Score=29.31 Aligned_cols=27 Identities=7% Similarity=-0.013 Sum_probs=17.8
Q ss_pred CCEEEEEecCCCCCCcceEEEEECCCCcEEEe
Q 012184 215 DENWYIVGGGDNNNGCQETIVLNMTKLAWSIL 246 (469)
Q Consensus 215 ~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~ 246 (469)
++..++.|+.+ ..+.+||+.+..-..+
T Consensus 353 ~~~~l~s~s~d-----g~v~iwd~~~~~~~~~ 379 (447)
T 3dw8_B 353 SDSVVMTGSYN-----NFFRMFDRNTKRDITL 379 (447)
T ss_dssp TSSEEEEECST-----TEEEEEETTTCCEEEE
T ss_pred CCCEEEEeccC-----CEEEEEEcCCCcceee
Confidence 44566777643 3588899988776544
No 432
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=65.71 E-value=16 Score=25.08 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012184 429 IENEVQILRQQKSAFEQEME 448 (469)
Q Consensus 429 ~e~e~~~~~q~~~~~~~~~~ 448 (469)
+..|.+.|++++..+..+++
T Consensus 48 l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 48 TTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555553
No 433
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=64.65 E-value=21 Score=34.73 Aligned_cols=15 Identities=7% Similarity=0.293 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 012184 433 VQILRQQKSAFEQEM 447 (469)
Q Consensus 433 ~~~~~q~~~~~~~~~ 447 (469)
+.++.+++..+++++
T Consensus 85 ~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 85 IGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 434
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=64.46 E-value=15 Score=21.92 Aligned_cols=7 Identities=14% Similarity=0.368 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 012184 437 RQQKSAF 443 (469)
Q Consensus 437 ~q~~~~~ 443 (469)
+.++.++
T Consensus 37 rdeiarl 43 (52)
T 3he5_B 37 RDEIARL 43 (52)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 435
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=64.43 E-value=44 Score=33.98 Aligned_cols=154 Identities=12% Similarity=0.199 Sum_probs=75.9
Q ss_pred eeeEEECCEEEEEccccCCCCCcceEEEEECCCC-eEEEeecCC---CCCCCCcceEEEE-ECCEEEEEeccCCCCCccC
Q 012184 56 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN-LCGVMETSG---KVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLN 130 (469)
Q Consensus 56 ~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~-~W~~~~~~g---~~p~~r~~~~~~~-~~~~lyi~GG~~~~~~~~~ 130 (469)
-+++...+.+|+|=|. .+|+++.... ......... .+|. ....+... .++++|+|-| +
T Consensus 447 DAit~~rg~~yfFKg~--------~yWr~~~~~~~~~~P~~Is~~wp~LP~-~IDAA~~~~~~~k~yFFkG--------~ 509 (631)
T 1ck7_A 447 DGIAQIRGEIFFFKDR--------FIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAG--------N 509 (631)
T ss_dssp SEEEECSSSEEEECSS--------EEEEESCTTSCCEEEEEGGGTCTTSCS-SCSBCCEETTTTEEEEEET--------T
T ss_pred ceeEecCCcEEEEcCC--------EEEEEcCCCCCCCCceeccccCCCCCc-cceEEEEECCCCEEEEEec--------C
Confidence 4556668899999653 2788876542 222222111 1222 22222221 2578999954 3
Q ss_pred cEEEEECCCC--eE-EEeeeCCCCCCC--CCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEe--eeecC-CC
Q 012184 131 DVHFLDLETM--TW-DAVEVTQTPPAP--RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ--PEIKG-DL 202 (469)
Q Consensus 131 ~v~~~d~~t~--~W-~~~~~~g~~p~~--r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~--~~~~~-~~ 202 (469)
..|+|+..+. .+ +.+...| .|.. +...+...-.++++|+|-| +..|+||..+..-.. +.... ..
T Consensus 510 ~yWry~~~~l~~GYPk~Is~~G-~P~~~~~IDAAf~~~~~gktYFFkG-------~~ywryd~~~~~vd~gYPk~i~~~w 581 (631)
T 1ck7_A 510 EYWIYSASTLERGYPKPLTSLG-LPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRYNEVKKKMDPGFPKLIADAW 581 (631)
T ss_dssp EEEEEETTEECTTCCEEGGGGT-CCTTCCCCCBCCCCTTTCEEEEEET-------TEEEEEETTTTEECTTCCEETTTSC
T ss_pred EEEEECCCccccCCCccchhcC-CCCCCCcceeEEEecCCCeEEEEEC-------CEEEEEcCCcccccCCCCcchHhhc
Confidence 4788874210 00 1111111 1211 1111211114678999987 578999976654221 11111 11
Q ss_pred -CCCCcceEEEEEC--CEEEEEecCCCCCCcceEEEEECCCC
Q 012184 203 -VTGRAGHAGITID--ENWYIVGGGDNNNGCQETIVLNMTKL 241 (469)
Q Consensus 203 -p~~r~~~~~~~~~--~~l~v~GG~~~~~~~~d~~~~d~~~~ 241 (469)
..+..-.++...+ +++|+|=| +..|+||..+.
T Consensus 582 ~G~p~~iDAAf~~~~~g~~YFFkG-------~~Ywr~d~~~~ 616 (631)
T 1ck7_A 582 NAIPDNLDAVVDLQGGGHSYFFKG-------AYYLKLENQSL 616 (631)
T ss_dssp SSCCTTCCEEECCTTSCBCEEEET-------TEEECCBTTBT
T ss_pred CCCCCCCcEeEEEcCCCeEEEEEC-------CEEEEEeCccc
Confidence 1122233444433 78899877 36788887554
No 436
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=64.33 E-value=29 Score=25.16 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=7.5
Q ss_pred hHhhhhhhhcchhhHHHHHHHH
Q 012184 377 FREKIDEVNSTHSELSKELSSV 398 (469)
Q Consensus 377 l~~~~~~~~~~~~e~~~el~~~ 398 (469)
+..-++..+.+...+.++....
T Consensus 12 l~ELLD~ir~Efe~~~~e~~~~ 33 (92)
T 3vp9_A 12 LNELLDAIRQEFLQVSQEANTY 33 (92)
T ss_dssp -----CCTTTTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444333
No 437
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=64.01 E-value=39 Score=24.60 Aligned_cols=16 Identities=19% Similarity=0.187 Sum_probs=6.7
Q ss_pred hhhcchhhHHHHHHHH
Q 012184 383 EVNSTHSELSKELSSV 398 (469)
Q Consensus 383 ~~~~~~~e~~~el~~~ 398 (469)
.++.++..++.++..+
T Consensus 27 ~LEqqN~~Le~~i~~l 42 (93)
T 3s4r_A 27 FLEQQNKILLAELEQL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 438
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=63.80 E-value=13 Score=23.95 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHHH
Q 012184 432 EVQILRQQKSAFEQE 446 (469)
Q Consensus 432 e~~~~~q~~~~~~~~ 446 (469)
|+++++++...+.++
T Consensus 27 E~~eLk~k~~~L~~~ 41 (53)
T 2yy0_A 27 ELAEMKEKYEAIVEE 41 (53)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 439
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=63.67 E-value=24 Score=23.69 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=17.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 012184 402 LVAERSRCFKLEAQIAELQKMLESSQTIENEVQI 435 (469)
Q Consensus 402 l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~ 435 (469)
+.++-..+.+.++...++.++|..++..++|++.
T Consensus 14 I~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~ 47 (64)
T 3t97_C 14 ITSLHREVEKVKLDQKRLDQELDFILSQQKELED 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555555555555443
No 440
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=63.27 E-value=30 Score=27.47 Aligned_cols=78 Identities=14% Similarity=0.135 Sum_probs=0.0
Q ss_pred hhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh-----------------hHHHHHHHHHH
Q 012184 376 RFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-----------------TIENEVQILRQ 438 (469)
Q Consensus 376 ~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~-----------------~~e~e~~~~~q 438 (469)
.|..-+.-.+....+...++...+.+++..+.++..+.....+...++.... .|+..+...++
T Consensus 9 ~L~~ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~ 88 (150)
T 3ajw_A 9 ALETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNGIASNRWINYQQFIQTLEKAIEQHRL 88 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCSGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhh
Q 012184 439 QKSAFEQEMERATSV 453 (469)
Q Consensus 439 ~~~~~~~~~~~~~~~ 453 (469)
.+...+.+++..+..
T Consensus 89 ~l~~~~~~~e~~r~~ 103 (150)
T 3ajw_A 89 QLTQWTQKVDLALKS 103 (150)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
No 441
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=63.15 E-value=41 Score=24.51 Aligned_cols=12 Identities=42% Similarity=0.562 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 012184 430 ENEVQILRQQKS 441 (469)
Q Consensus 430 e~e~~~~~q~~~ 441 (469)
+.++..+++++.
T Consensus 55 e~~i~~Lr~~i~ 66 (93)
T 3s4r_A 55 EEEMRELRRQVD 66 (93)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 442
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=63.09 E-value=83 Score=27.99 Aligned_cols=137 Identities=9% Similarity=0.067 Sum_probs=65.9
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCe--EEEeecCCCCCCCCcceEEEE-ECCEEEEEeccCCCCCccCcEEEEECC
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLE 138 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~-~~~~lyi~GG~~~~~~~~~~v~~~d~~ 138 (469)
++.||+.. . ...++.||+. +. |.... +... ..+++. -++.||+-. ..+++||..
T Consensus 147 ~g~l~vgt-~------~~~l~~~d~~-g~~~~~~~~-----~~~~-~~~~~~d~~g~l~v~t---------~~l~~~d~~ 203 (330)
T 3hxj_A 147 DGTIYVGS-N------DNYLYAINPD-GTEKWRFKT-----NDAI-TSAASIGKDGTIYFGS---------DKVYAINPD 203 (330)
T ss_dssp TSCEEEEC-T------TSEEEEECTT-SCEEEEEEC-----SSCC-CSCCEECTTCCEEEES---------SSEEEECTT
T ss_pred CCEEEEEc-C------CCEEEEECCC-CCEeEEEec-----CCCc-eeeeEEcCCCEEEEEe---------CEEEEECCC
Confidence 56666642 1 1248999988 43 54432 1111 122223 256666542 348999943
Q ss_pred C-CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCc-eEeeeecCCCCCCCcceEEEEE-C
Q 012184 139 T-MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE-WSQPEIKGDLVTGRAGHAGITI-D 215 (469)
Q Consensus 139 t-~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~-W~~~~~~~~~p~~r~~~~~~~~-~ 215 (469)
. ..|..... .....+++...++.||+... .+.+++||..... |.... +..... +.+.. +
T Consensus 204 g~~~~~~~~~------~~~~~~~~~~~~g~l~v~t~------~~gl~~~~~~g~~~~~~~~-----~~~~~~-~~~~~~~ 265 (330)
T 3hxj_A 204 GTEKWNFYAG------YWTVTRPAISEDGTIYVTSL------DGHLYAINPDGTEKWRFKT-----GKRIES-SPVIGNT 265 (330)
T ss_dssp SCEEEEECCS------SCCCSCCEECTTSCEEEEET------TTEEEEECTTSCEEEEEEC-----SSCCCS-CCEECTT
T ss_pred CcEEEEEccC------CcceeceEECCCCeEEEEcC------CCeEEEECCCCCEeEEeeC-----CCCccc-cceEcCC
Confidence 2 24654321 11123334444556777431 1458888875444 54321 111111 22333 5
Q ss_pred CEEEEEecCCCCCCcceEEEEECCCC-cEEE
Q 012184 216 ENWYIVGGGDNNNGCQETIVLNMTKL-AWSI 245 (469)
Q Consensus 216 ~~l~v~GG~~~~~~~~d~~~~d~~~~-~W~~ 245 (469)
+.||+... ...+++||++.. .|..
T Consensus 266 g~l~v~t~------~ggl~~~d~~g~~~~~~ 290 (330)
T 3hxj_A 266 DTIYFGSY------DGHLYAINPDGTEKWNF 290 (330)
T ss_dssp SCEEEECT------TCEEEEECTTSCEEEEE
T ss_pred CeEEEecC------CCCEEEECCCCcEEEEE
Confidence 66766422 125888887433 4543
No 443
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=62.78 E-value=21 Score=25.81 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=6.1
Q ss_pred HHHHHHhHHHH
Q 012184 353 IDAIKEDKRVL 363 (469)
Q Consensus 353 ~~~l~~~~~~~ 363 (469)
+..++..++.+
T Consensus 23 v~~lKq~RRtl 33 (90)
T 2wt7_B 23 VIRLKQKRRTL 33 (90)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 55555555554
No 444
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=62.73 E-value=42 Score=31.77 Aligned_cols=79 Identities=13% Similarity=0.015 Sum_probs=47.3
Q ss_pred eeeEEECCEEEEEcc---ccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEE-ECC--EEEEEeccCCCCCcc
Q 012184 56 HCMVKWGTKLLILGG---HYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGS--RLIIFGGEDRSRKLL 129 (469)
Q Consensus 56 ~~~~~~~~~iy~~GG---~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~--~lyi~GG~~~~~~~~ 129 (469)
.++..-++++|+.-+ ...+....+.++++|+.|++-..--..| ..-+++++ -++ .||+.-+ ..
T Consensus 285 ~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-----~~~~~lavs~D~~~~ly~tn~------~~ 353 (386)
T 3sjl_D 285 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-----HEIDSINVSQDEKPLLYALST------GD 353 (386)
T ss_dssp EEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-----EEECEEEECSSSSCEEEEEET------TT
T ss_pred eeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-----CCcceEEECCCCCeEEEEEcC------CC
Confidence 333334789999743 2223334578999999999865544222 22223333 344 4666433 26
Q ss_pred CcEEEEECCCCeEEEe
Q 012184 130 NDVHFLDLETMTWDAV 145 (469)
Q Consensus 130 ~~v~~~d~~t~~W~~~ 145 (469)
+++.+||..+++-..-
T Consensus 354 ~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 354 KTLYIHDAESGEELRS 369 (386)
T ss_dssp TEEEEEETTTCCEEEE
T ss_pred CeEEEEECCCCcEEEE
Confidence 6799999999886543
No 445
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=62.23 E-value=88 Score=32.46 Aligned_cols=118 Identities=10% Similarity=0.005 Sum_probs=62.1
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCC-CeEEE-eecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEEC--
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLET-NLCGV-METSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDL-- 137 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t-~~W~~-~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~-- 137 (469)
++.||+...... .....++.+|+.+ ..|.. +.+. .....-......++.|++..-.+. ...++++|+
T Consensus 330 g~~l~~~t~~~~--a~~~~L~~~d~~~~~~~~~~li~~---~~~~~l~~~~~~~~~lv~~~~~~g----~~~l~~~dl~~ 400 (751)
T 2xe4_A 330 TSHLVILTNEGG--AVNHKLLIAPRGQPSDWSHVLVDH---SEDVFMESIAVRSNYLVVAGRRAG----LTRIWTMMADS 400 (751)
T ss_dssp TTEEEEEECTTT--CTTCEEEEEETTSTTCCCCEEECC---CSSEEEEEEEECSSEEEEEEEETT----EEEEEEEECCT
T ss_pred CCEEEEEeCCCC--CCCcEEEEEcCCCcccceeeEECC---CCCcEEEEEEEECCEEEEEEEeCC----EEEEEEEeccc
Confidence 788888865431 1223589999886 67876 5421 111121233344677777654332 456888986
Q ss_pred -----CCCe-EEEeeeCCCCCCCCCCceEEE-------EcCcEE-EEEecCCCCcccCcEEEEECCCCceEeee
Q 012184 138 -----ETMT-WDAVEVTQTPPAPRYDHSAAL-------HANRYL-IVFGGCSHSIFFNDLHVLDLQTNEWSQPE 197 (469)
Q Consensus 138 -----~t~~-W~~~~~~g~~p~~r~~~~~~~-------~~~~~l-~v~GG~~~~~~~~~i~~~d~~~~~W~~~~ 197 (469)
.+.. -..+. .| ...+.... .+++.+ |.+.+. .....++.||+.+++...+.
T Consensus 401 ~~~~~~~g~~~~~l~----l~--~~~~~~~~~~~~~~~~~~~~l~~~~ss~---~~P~~~~~~d~~~~~~~~l~ 465 (751)
T 2xe4_A 401 QDGVFKAGTGLREVV----ME--EPIFTVHLVESQMLEYEEPTFRMEYSSL---ATPNTWFDVSPQDHSRTAVK 465 (751)
T ss_dssp TTSCCCTTTCCEECC----CC--CSSCEEEECGGGCCCTTCSCEEEEEEET---TEEEEEEEECTTTCCEEEEE
T ss_pred ccccccCCccceEEC----CC--CceeEEEeccCcccCCCCCEEEEEEeCC---CCCCEEEEEECCCCcEEEEe
Confidence 3433 33332 12 21222222 122333 333322 22357899999888776665
No 446
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=62.13 E-value=35 Score=23.67 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=9.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Q 012184 395 LSSVQGQLVAERSRCFKLEAQIA 417 (469)
Q Consensus 395 l~~~~~~l~~~~~~~~~~~~~~~ 417 (469)
+.+.+++|.+....+..++++++
T Consensus 57 IA~~~~~L~qAraDL~~l~r~~a 79 (90)
T 4b6x_A 57 IANTSQQLRHARADLADLQRRFA 79 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433
No 447
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=61.91 E-value=7.1 Score=26.53 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=0.0
Q ss_pred hhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHH
Q 012184 374 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLE 413 (469)
Q Consensus 374 ~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~ 413 (469)
.+++...+...++.+.+++.++.+...++++++..+.+++
T Consensus 13 ~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 13 EEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 448
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=61.76 E-value=7.6 Score=22.28 Aligned_cols=30 Identities=7% Similarity=0.122 Sum_probs=0.0
Q ss_pred hhcchhhHHHHHHHHHHHHHHhhhHHHHHH
Q 012184 384 VNSTHSELSKELSSVQGQLVAERSRCFKLE 413 (469)
Q Consensus 384 ~~~~~~e~~~el~~~~~~l~~~~~~~~~~~ 413 (469)
+.+.+....+++.+++.|+..+++++..||
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhcC
No 449
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=61.38 E-value=16 Score=24.78 Aligned_cols=41 Identities=12% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 012184 412 LEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATS 452 (469)
Q Consensus 412 ~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~~~~~ 452 (469)
.+...+.+..+...+.+||.++++...+++.+..++++.++
T Consensus 13 ~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 13 EEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 450
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=61.20 E-value=48 Score=24.60 Aligned_cols=78 Identities=18% Similarity=0.300 Sum_probs=0.0
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHhh------------hHHHHHHHHHHHHHHHH
Q 012184 382 DEVNSTHSELSKELSSVQGQLVAE-----RSRCFKLEAQIAELQKMLESSQ------------TIENEVQILRQQKSAFE 444 (469)
Q Consensus 382 ~~~~~~~~e~~~el~~~~~~l~~~-----~~~~~~~~~~~~e~~~~l~~~~------------~~e~e~~~~~q~~~~~~ 444 (469)
+.++.....+..++...-.++... +..+.+.+..+.|.++-+++|+ .+...+...++++..+.
T Consensus 8 e~YE~df~~l~~~i~~kl~~i~~~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk 87 (102)
T 1vcs_A 8 EGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLE 87 (102)
T ss_dssp CCSHHHHHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhcccCCCc
Q 012184 445 QEMERATSVQTQGSGG 460 (469)
Q Consensus 445 ~~~~~~~~~q~q~~~~ 460 (469)
.++.+++.. .+.+.|
T Consensus 88 ~elk~~~~~-~~~~~~ 102 (102)
T 1vcs_A 88 TDFKRSRIA-SGPSSG 102 (102)
T ss_dssp HHTHHHHTC-CSSCCC
T ss_pred HHHHHHHhh-cccCCC
No 451
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=61.09 E-value=22 Score=34.16 Aligned_cols=71 Identities=20% Similarity=0.229 Sum_probs=0.0
Q ss_pred hhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 012184 350 RTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 426 (469)
Q Consensus 350 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~ 426 (469)
..++.++.++.+.+.......+.+...+.+++.. ...++.+++..+..++++++..++.++.++++++...
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKRVPK------APPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 452
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=61.08 E-value=58 Score=31.89 Aligned_cols=101 Identities=10% Similarity=0.105 Sum_probs=0.0
Q ss_pred cchhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhH-------HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 012184 347 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSEL-------SKELSSVQGQLVAERSRCFKLEAQIAEL 419 (469)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~-------~~el~~~~~~l~~~~~~~~~~~~~~~e~ 419 (469)
+.+......++.........+.+.+....+..++.+.++...+.. .++++.++..+++.+.++.+.+++....
T Consensus 132 K~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~~Y~~~ 211 (486)
T 3haj_A 132 KEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKS 211 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhh-hHHHHHHHHHHHHHHHHHHH
Q 012184 420 QKMLESSQ-TIENEVQILRQQKSAFEQEM 447 (469)
Q Consensus 420 ~~~l~~~~-~~e~e~~~~~q~~~~~~~~~ 447 (469)
-+.+...+ ..+.++..+.+.+|.++++.
T Consensus 212 v~~~n~~~~~y~~~~~~~~~~lQ~lEeeR 240 (486)
T 3haj_A 212 LKELDQGTPQYMENMEQVFEQCQQFEEKR 240 (486)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 453
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=61.07 E-value=25 Score=23.51 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=0.0
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 012184 382 DEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES 425 (469)
Q Consensus 382 ~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~ 425 (469)
+-....+.+++.+...++.++..++..+..|+.+++.+...+..
T Consensus 19 ~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 19 NRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAA 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 454
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=60.58 E-value=1e+02 Score=28.30 Aligned_cols=233 Identities=10% Similarity=-0.012 Sum_probs=0.0
Q ss_pred eEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEE---CCEEEEEccccCCCCCcceEEEEECCCCeEEE
Q 012184 17 VMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW---GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 93 (469)
Q Consensus 17 ~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~---~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~ 93 (469)
+|.++............... ..........++.+ |..+.+.+|..... +..+|+.+..-..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~v~fSpDg~~la~as~~~d~~-----i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 108 KFKYDKVNDQLEFLTSVDFD-----------ASTNADDYTKLVYISREGTVAAIASSKVPAI-----MRIIDPSDLTEKF 171 (365)
T ss_dssp EEEEETTTTEEEEEEEECSS-----------CCCCTTCCEEEEEECTTSSCEEEEESCSSCE-----EEEEETTTTEEEE
T ss_pred EEEecCCCceEEEeeeecee-----------ecCCcccCEEEEEEcCCCCEEEEEECCCCCE-----EEEeECCCCcEEE
Q ss_pred eecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEec
Q 012184 94 METSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG 173 (469)
Q Consensus 94 ~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG 173 (469)
.. .........+..-++++++.|+.+. +.+++..+........ .......-.++....++..++.++
T Consensus 172 ~~----~~~~~V~~v~fspdg~~l~s~s~~~-------~~~~~~~~~~~~~~~~--~~~~~~~v~~v~fspdg~~l~~~s 238 (365)
T 4h5i_A 172 EI----ETRGEVKDLHFSTDGKVVAYITGSS-------LEVISTVTGSCIARKT--DFDKNWSLSKINFIADDTVLIAAS 238 (365)
T ss_dssp EE----ECSSCCCEEEECTTSSEEEEECSSC-------EEEEETTTCCEEEEEC--CCCTTEEEEEEEEEETTEEEEEEE
T ss_pred Ee----CCCCceEEEEEccCCceEEecccee-------EEEEEeccCcceeeee--cCCCCCCEEEEEEcCCCCEEEEEe
Q ss_pred CCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCC
Q 012184 174 CSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGR 252 (469)
Q Consensus 174 ~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~ 252 (469)
.+...... ++.+++...................-.+++.. ++.+++.|+.++. +.+||+.+.+-.. ..+.+.
T Consensus 239 ~d~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~-----V~iwd~~~~~~~~-~~~~gH 311 (365)
T 4h5i_A 239 LKKGKGIV-LTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNS-----IALVKLKDLSMSK-IFKQAH 311 (365)
T ss_dssp ESSSCCEE-EEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSC-----EEEEETTTTEEEE-EETTSS
T ss_pred cCCcceeE-EeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCE-----EEEEECCCCcEEE-EecCcc
Q ss_pred CCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCC
Q 012184 253 NPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR 295 (469)
Q Consensus 253 ~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~ 295 (469)
. ..+..+...+++.+++.|+.++. +-++|+..+
T Consensus 312 ~------~~V~~v~fSpdg~~laS~S~D~t----vrvw~ip~~ 344 (365)
T 4h5i_A 312 S------FAITEVTISPDSTYVASVSAANT----IHIIKLPLN 344 (365)
T ss_dssp S------SCEEEEEECTTSCEEEEEETTSE----EEEEECCTT
T ss_pred c------CCEEEEEECCCCCEEEEEeCCCe----EEEEEcCCC
No 455
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=60.56 E-value=11 Score=34.70 Aligned_cols=47 Identities=13% Similarity=0.211 Sum_probs=0.0
Q ss_pred hhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184 376 RFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM 422 (469)
Q Consensus 376 ~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~ 422 (469)
.+-.++..++..+...+.+++.++..+..++.++++|+.++.+++.+
T Consensus 1 ~~~~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~ 47 (319)
T 1fzc_C 1 KMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 47 (319)
T ss_dssp ---------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 456
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=60.46 E-value=1e+02 Score=28.29 Aligned_cols=237 Identities=6% Similarity=-0.145 Sum_probs=0.0
Q ss_pred CceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184 15 GVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 94 (469)
Q Consensus 15 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~ 94 (469)
+.+..+++.......+... ...-.+.+.-..++.||+. +.....++++++....-..+
T Consensus 53 ~~I~~i~~~g~~~~~~~~~----------------~~~~~~l~~d~~~~~ly~~------D~~~~~I~r~~~~g~~~~~~ 110 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLNN----------------LENAIALDFHHRRELVFWS------DVTLDRILRANLNGSNVEEV 110 (349)
T ss_dssp SCEEEECTTSCCEEEEECS----------------CSCEEEEEEETTTTEEEEE------ETTTTEEEEEETTSCSCEEE
T ss_pred cceEEEeCCCCeeEEeecC----------------CCceEEEEEeccccEEEEE------eccCCceEEEecCCCCceEE
Q ss_pred ecCCCCCCCCcceEEEE-ECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEc--CcEEEEE
Q 012184 95 ETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA--NRYLIVF 171 (469)
Q Consensus 95 ~~~g~~p~~r~~~~~~~-~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~--~~~l~v~ 171 (469)
. ..........++- .++.||+.-. ..+.|+++++....-..+. .........++++ ++.||+.
T Consensus 111 ~---~~~~~~p~glavd~~~g~ly~~d~------~~~~I~~~~~dG~~~~~l~-----~~~l~~P~~iavdp~~g~ly~t 176 (349)
T 3v64_C 111 V---STGLESPGGLAVDWVHDKLYWTDS------GTSRIEVANLDGAHRKVLL-----WQSLEKPRAIALHPMEGTIYWT 176 (349)
T ss_dssp E---CSSCSCCCEEEEETTTTEEEEEET------TTTEEEEEETTSCSCEEEE-----CTTCSCEEEEEEETTTTEEEEE
T ss_pred E---eCCCCCccEEEEecCCCeEEEEcC------CCCeEEEEcCCCCceEEEE-----eCCCCCcceEEEecCcCeEEEe
Q ss_pred ecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccC
Q 012184 172 GGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSV 249 (469)
Q Consensus 172 GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~ 249 (469)
.-.. .+.|+++++....-..+ ....-....+++.- ++.||+.-.. .+.++++|+....-..+...
T Consensus 177 d~~~----~~~I~r~~~dG~~~~~~----~~~~~~~PnGla~d~~~~~lY~aD~~-----~~~I~~~~~dG~~~~~~~~~ 243 (349)
T 3v64_C 177 DWGN----TPRIEASSMDGSGRRII----ADTHLFWPNGLTIDYAGRRMYWVDAK-----HHVIERANLDGSHRKAVISQ 243 (349)
T ss_dssp ECSS----SCEEEEEETTSCSCEES----CCSSCSCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEECS
T ss_pred ccCC----CCEEEEEeCCCCCcEEE----EECCCCCcceEEEeCCCCEEEEEECC-----CCEEEEEeCCCCceEEEEeC
Q ss_pred CCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCCCCCccccCCCchhhcch
Q 012184 250 KGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAA 313 (469)
Q Consensus 250 ~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~ 313 (469)
....| +++++. ++.||+.--.++. +.+++..+..-...-..+...+...+.
T Consensus 244 ~~~~P-----~giav~----~~~ly~td~~~~~----V~~~~~~~G~~~~~i~~~~~~p~gi~v 294 (349)
T 3v64_C 244 GLPHP-----FAITVF----EDSLYWTDWHTKS----INSANKFTGKNQEIIRNKLHFPMDIHT 294 (349)
T ss_dssp SCSSE-----EEEEEE----TTEEEEEETTTTE----EEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred CCCCc-----eEEEEE----CCEEEEecCCCCe----EEEEEccCCCccEEeccCCCCCceEEE
No 457
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=60.36 E-value=25 Score=34.65 Aligned_cols=70 Identities=16% Similarity=0.110 Sum_probs=0.0
Q ss_pred hhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhh-----------cchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 012184 350 RTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVN-----------STHSELSKELSSVQGQLVAERSRCFKLEAQIAE 418 (469)
Q Consensus 350 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e 418 (469)
..++.++.++.+.++......+.+...+.+++.++. +..+++..+..++..++..+++++.+++.++.+
T Consensus 69 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 69 LPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 012184 419 L 419 (469)
Q Consensus 419 ~ 419 (469)
+
T Consensus 149 ~ 149 (501)
T 1wle_A 149 R 149 (501)
T ss_dssp H
T ss_pred H
No 458
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=60.25 E-value=18 Score=19.48 Aligned_cols=29 Identities=17% Similarity=0.459 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184 394 ELSSVQGQLVAERSRCFKLEAQIAELQKM 422 (469)
Q Consensus 394 el~~~~~~l~~~~~~~~~~~~~~~e~~~~ 422 (469)
+..+++.+..+....--++++++++++.+
T Consensus 2 evaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHh
No 459
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=60.09 E-value=1e+02 Score=28.12 Aligned_cols=179 Identities=8% Similarity=0.014 Sum_probs=0.0
Q ss_pred CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCe
Q 012184 62 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT 141 (469)
Q Consensus 62 ~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~ 141 (469)
++.++..|+... +..||..+..-.... ..+ ......+..-.+.+.+.||.+. .+.++|+.+++
T Consensus 30 dg~~la~g~~~~-------~~iw~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~d~------~v~iWd~~~~~ 92 (355)
T 3vu4_A 30 DQSCLILSTLKS-------FEIYNVHPVAHIMSQ---EMR-HLSKVRMLHRTNYVAFVTGVKE------VVHIWDDVKKQ 92 (355)
T ss_dssp TSSEEEEECSSE-------EEEEEETTEEEEEEE---ECS-CCCEEEECTTSSEEEEECSSTT------EEEEEETTTTE
T ss_pred CCCEEEEEcCCE-------EEEEecCCcceeeee---ecC-CeEEEEEcCCCCEEEEEECCcc------EEEEEECCCCc
Q ss_pred EEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCC--ceEeeeecCCCCCCCcceEEEEECCEEE
Q 012184 142 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN--EWSQPEIKGDLVTGRAGHAGITIDENWY 219 (469)
Q Consensus 142 W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~--~W~~~~~~~~~p~~r~~~~~~~~~~~l~ 219 (469)
-...- .....-..+.+..+.+++... +.+++||+.+. .-..+.. ....+.+....+
T Consensus 93 ~~~~~------~~~~~v~~v~~~~~~~~~~~~-------~~i~i~d~~~~~~~~~~~~~---------~~~~~~~s~~~l 150 (355)
T 3vu4_A 93 DVSRI------KVDAPVKDLFLSREFIVVSYG-------DVISVFKFGNPWKRITDDIR---------FGGVCEFSNGLL 150 (355)
T ss_dssp EEEEE------ECSSCEEEEEECSSEEEEEET-------TEEEEEESSTTCCBSSCCEE---------EEEEEEEETTEE
T ss_pred EEEEE------ECCCceEEEEEcCCEEEEEEc-------CEEEEEECCCCceeeEEecc---------CCceEEEEccEE
Q ss_pred EEe-cCCCCCCcceEEEEECCCCc-----------------EEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCC
Q 012184 220 IVG-GGDNNNGCQETIVLNMTKLA-----------------WSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG 281 (469)
Q Consensus 220 v~G-G~~~~~~~~d~~~~d~~~~~-----------------W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~ 281 (469)
++. |.... .+.+||+.+.. -..+........ .+...+++.+++.|+.++
T Consensus 151 a~~sg~~~g----~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~---------~~~~s~~g~~l~s~s~d~ 217 (355)
T 3vu4_A 151 VYSNEFNLG----QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIK---------MVRLNRKSDMVATCSQDG 217 (355)
T ss_dssp EEEESSCTT----CEEEEECCC------------------CCEEECCCSSCEE---------EEEECTTSSEEEEEETTC
T ss_pred EEeCCCcCc----EEEEEECCCCCccccccccccccccCcccEEEEccCCceE---------EEEECCCCCEEEEEeCCC
Q ss_pred CCCce-EEEEECCCCC
Q 012184 282 KYNNE-VFVMRLKPRD 296 (469)
Q Consensus 282 ~~~~~-~~~~d~~~~~ 296 (469)
. +.+||+.+..
T Consensus 218 ----~~v~iwd~~~~~ 229 (355)
T 3vu4_A 218 ----TIIRVFKTEDGV 229 (355)
T ss_dssp ----SEEEEEETTTCC
T ss_pred ----CEEEEEECCCCc
No 460
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=60.01 E-value=31 Score=22.00 Aligned_cols=42 Identities=10% Similarity=0.080 Sum_probs=0.0
Q ss_pred hcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 012184 385 NSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 426 (469)
Q Consensus 385 ~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~ 426 (469)
+..+.++..++..+-.++.++.+-+.+...++..+.+++...
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 461
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=59.87 E-value=28 Score=33.83 Aligned_cols=70 Identities=13% Similarity=0.141 Sum_probs=0.0
Q ss_pred hhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcc---hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 012184 350 RTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNST---HSELSKELSSVQGQLVAERSRCFKLEAQIAEL 419 (469)
Q Consensus 350 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~ 419 (469)
..++.++.++.+.++..+...+.+...+.+++..++.. .+++..+..++..++..++++..+++.++.++
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 462
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=59.50 E-value=84 Score=26.91 Aligned_cols=113 Identities=14% Similarity=0.080 Sum_probs=0.0
Q ss_pred EEEEECCEEEEEeccCCCCCccCcEEEEECCC---CeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEE
Q 012184 108 SVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET---MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLH 184 (469)
Q Consensus 108 ~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t---~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~ 184 (469)
+++...+++|+|=|.. +|+++... ..=..+....+..+.....+.....++++|+|-| +..|
T Consensus 35 Ai~~~~g~~~fFkg~~--------~Wr~~~~~~~~~~P~~I~~~wp~lp~~IDAA~~~~~~~k~yfFkG-------~~yW 99 (218)
T 1gen_A 35 GIAQIRGEIFFFKDRF--------IWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAG-------NEYW 99 (218)
T ss_dssp EEEEETTEEEEEETTE--------EEEESSTTSCCEEEEEGGGTCTTSCSCCSEEEEETTTTEEEEEET-------TEEE
T ss_pred EEEeCCCcEEEEECCE--------EEEEeCCCCccCCCEEHHHhcCCCCCCccEEEEECCCCEEEEEeC-------CEEE
Q ss_pred EEECCCCce---EeeeecCCCCCCCcceEEEE--ECCEEEEEecCCCCCCcceEEEEECCCCc
Q 012184 185 VLDLQTNEW---SQPEIKGDLVTGRAGHAGIT--IDENWYIVGGGDNNNGCQETIVLNMTKLA 242 (469)
Q Consensus 185 ~~d~~~~~W---~~~~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~d~~~~d~~~~~ 242 (469)
+|+-.+..- ..+...+-......-.+|.. .++++|+|-| +..|+||..+..
T Consensus 100 ~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG-------~~ywr~d~~~~~ 155 (218)
T 1gen_A 100 IYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRYNEVKKK 155 (218)
T ss_dssp EEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET-------TEEEEEETTTTE
T ss_pred EEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC-------CEEEEEECcccc
No 463
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=59.27 E-value=76 Score=30.51 Aligned_cols=101 Identities=12% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH--HhhhHH
Q 012184 353 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE--SSQTIE 430 (469)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~--~~~~~e 430 (469)
...|....+.....+++......++.+.-.++.+.+..++......|.+...-..-+.+....++|..+-+. .....+
T Consensus 83 ad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~~~~~ 162 (461)
T 3ghg_B 83 QEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVNSNIP 162 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHTHHH
T ss_pred HHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhccch
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 012184 431 NEVQILRQQKSAFEQEMERATSV 453 (469)
Q Consensus 431 ~e~~~~~q~~~~~~~~~~~~~~~ 453 (469)
..+..|+..++.+.+.+++++..
T Consensus 163 ~~i~~l~~~~~~~~~~i~~l~~~ 185 (461)
T 3ghg_B 163 TNLRVLRSILENLRSKIQKLESD 185 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
No 464
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=59.07 E-value=35 Score=22.42 Aligned_cols=51 Identities=10% Similarity=0.151 Sum_probs=0.0
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 012184 381 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS 441 (469)
Q Consensus 381 ~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~ 441 (469)
+...+..+..++.++++++ .+++++++|-+.-+...-.|+.|+.-.++-++
T Consensus 2 l~~~q~~i~~le~el~~~r----------~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 2 MKQLEDKVEELLSKNYHLE----------NEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp CCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
No 465
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=58.80 E-value=1.1e+02 Score=28.09 Aligned_cols=196 Identities=8% Similarity=-0.048 Sum_probs=0.0
Q ss_pred CceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCCCeEEEe
Q 012184 15 GVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 94 (469)
Q Consensus 15 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~ 94 (469)
+.++++++....-..+...+ ...-.+.++-..++.||+. ....+.++++++....-..+
T Consensus 95 ~~I~r~~~~g~~~~~~~~~~---------------~~~p~glavd~~~g~ly~~------d~~~~~I~~~~~dG~~~~~l 153 (349)
T 3v64_C 95 DRILRANLNGSNVEEVVSTG---------------LESPGGLAVDWVHDKLYWT------DSGTSRIEVANLDGAHRKVL 153 (349)
T ss_dssp TEEEEEETTSCSCEEEECSS---------------CSCCCEEEEETTTTEEEEE------ETTTTEEEEEETTSCSCEEE
T ss_pred CceEEEecCCCCceEEEeCC---------------CCCccEEEEecCCCeEEEE------cCCCCeEEEEcCCCCceEEE
Q ss_pred ecCCCCCCCCcceEEEE-ECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEec
Q 012184 95 ETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG 173 (469)
Q Consensus 95 ~~~g~~p~~r~~~~~~~-~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG 173 (469)
. ......-...++- .++.||+.--.. ...|+++++....-..+. ......-...++-..++.||+.-.
T Consensus 154 ~---~~~l~~P~~iavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~~---~~~~~~PnGla~d~~~~~lY~aD~ 222 (349)
T 3v64_C 154 L---WQSLEKPRAIALHPMEGTIYWTDWGN-----TPRIEASSMDGSGRRIIA---DTHLFWPNGLTIDYAGRRMYWVDA 222 (349)
T ss_dssp E---CTTCSCEEEEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEESC---CSSCSCEEEEEEETTTTEEEEEET
T ss_pred E---eCCCCCcceEEEecCcCeEEEeccCC-----CCEEEEEeCCCCCcEEEE---ECCCCCcceEEEeCCCCEEEEEEC
Q ss_pred CCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEECCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCC
Q 012184 174 CSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRN 253 (469)
Q Consensus 174 ~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~ 253 (469)
.. +.|+++|+....-..+...+ ....+++++.++.+|+.--. .+.+.++|..+..-...-..+...
T Consensus 223 ~~-----~~I~~~~~dG~~~~~~~~~~----~~~P~giav~~~~ly~td~~-----~~~V~~~~~~~G~~~~~i~~~~~~ 288 (349)
T 3v64_C 223 KH-----HVIERANLDGSHRKAVISQG----LPHPFAITVFEDSLYWTDWH-----TKSINSANKFTGKNQEIIRNKLHF 288 (349)
T ss_dssp TT-----TEEEEEETTSCSCEEEECSS----CSSEEEEEEETTEEEEEETT-----TTEEEEEETTTCCSCEEEECSCSC
T ss_pred CC-----CEEEEEeCCCCceEEEEeCC----CCCceEEEEECCEEEEecCC-----CCeEEEEEccCCCccEEeccCCCC
Q ss_pred CCC
Q 012184 254 PLA 256 (469)
Q Consensus 254 p~~ 256 (469)
|..
T Consensus 289 p~g 291 (349)
T 3v64_C 289 PMD 291 (349)
T ss_dssp CCC
T ss_pred Cce
No 466
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=58.35 E-value=91 Score=29.61 Aligned_cols=95 Identities=12% Similarity=0.123 Sum_probs=0.0
Q ss_pred cchhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhh----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184 347 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSE----LSKELSSVQGQLVAERSRCFKLEAQIAELQKM 422 (469)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e----~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~ 422 (469)
..+...++.|+....+++..-.....-+..++......+..... ..+.-.....+..+.+..+...+.++.+|+..
T Consensus 34 ~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~ 113 (411)
T 3ghg_C 34 TKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEI 113 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q ss_pred HHHhhhHHHHHHHHHHHHH
Q 012184 423 LESSQTIENEVQILRQQKS 441 (469)
Q Consensus 423 l~~~~~~e~e~~~~~q~~~ 441 (469)
+....++-+++.+..+++.
T Consensus 114 ~~~~~~~i~~L~~~v~~l~ 132 (411)
T 3ghg_C 114 YNSNNQKIVNLKEKVAQLE 132 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
No 467
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=58.05 E-value=8.6 Score=31.96 Aligned_cols=45 Identities=22% Similarity=0.397 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 012184 411 KLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQT 455 (469)
Q Consensus 411 ~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~~~~~~q~ 455 (469)
.|..+++++++.++.+..|..++++++.+++++...+.+++....
T Consensus 3 ~l~~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~ 47 (182)
T 3kqg_A 3 TLNAQIPELKSDLEKASALNTKIRALQGSLENMSKLLKRQNDILQ 47 (182)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 468
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=57.67 E-value=27 Score=22.65 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 012184 420 QKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQG 457 (469)
Q Consensus 420 ~~~l~~~~~~e~e~~~~~q~~~~~~~~~~~~~~~q~q~ 457 (469)
.++.+.++.||.++..|..+..++..+++.+++.-.++
T Consensus 18 ~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~~~ 55 (55)
T 1dh3_A 18 RKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYSHK 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
No 469
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=57.39 E-value=16 Score=34.25 Aligned_cols=87 Identities=6% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 012184 361 RVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQK 440 (469)
Q Consensus 361 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~ 440 (469)
..++..+...+.+...++.+++..+..+...+++++..+.-..+----..++++...++.....+.+.++.++++++.++
T Consensus 66 ~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l 145 (369)
T 4dk0_A 66 TTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEV 145 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 012184 441 SAFEQEM 447 (469)
Q Consensus 441 ~~~~~~~ 447 (469)
++.+..+
T Consensus 146 ~~a~~~l 152 (369)
T 4dk0_A 146 NTAETNL 152 (369)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
No 470
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=57.03 E-value=73 Score=25.43 Aligned_cols=92 Identities=12% Similarity=0.150 Sum_probs=0.0
Q ss_pred hhhhhhhhhHhhhhhhhcchhhHHHHHHHH---HHHHHHhhhHHHHH---------------------------------
Q 012184 369 EVRTENSRFREKIDEVNSTHSELSKELSSV---QGQLVAERSRCFKL--------------------------------- 412 (469)
Q Consensus 369 ~~~~~~~~l~~~~~~~~~~~~e~~~el~~~---~~~l~~~~~~~~~~--------------------------------- 412 (469)
....+.+++...++.++..++.+..+++.+ +.++...+.-+..+
T Consensus 6 ~~~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~ 85 (151)
T 2zdi_C 6 QNNKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVS 85 (151)
T ss_dssp SSTTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEE
Q ss_pred -----------HHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCCc
Q 012184 413 -----------EAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERATSVQTQ-GSGG 460 (469)
Q Consensus 413 -----------~~~~~e~~~~l~~~~----~~e~e~~~~~q~~~~~~~~~~~~~~~q~q-~~~~ 460 (469)
+.-+.-+.+++..++ ++++.++.++.+...++..+++..+...+ ..++
T Consensus 86 lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~~~~~~~ 149 (151)
T 2zdi_C 86 VGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQSMTSFKV 149 (151)
T ss_dssp EETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTTTTCCC
T ss_pred eCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 471
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=56.92 E-value=19 Score=21.58 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=0.0
Q ss_pred hhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHH
Q 012184 371 RTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCF 410 (469)
Q Consensus 371 ~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~ 410 (469)
......|+.+..+++..+.|++..+.-++.+.+.+++.+.
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
No 472
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=56.84 E-value=97 Score=26.80 Aligned_cols=198 Identities=8% Similarity=-0.045 Sum_probs=0.0
Q ss_pred eeeEEE--CCEEEEEccccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEE-CCEEEEEeccCCCCCccCcE
Q 012184 56 HCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDV 132 (469)
Q Consensus 56 ~~~~~~--~~~iy~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyi~GG~~~~~~~~~~v 132 (469)
+.++.. ++.||+.-..... +++||+.+..-..+. ..........++.- ++.||+.-. ..+.+
T Consensus 39 ~gi~~d~~~~~ly~~d~~~~~------I~~~~~~g~~~~~~~---~~~~~~p~~ia~d~~~~~lyv~d~------~~~~I 103 (267)
T 1npe_A 39 IGLAFDCVDKVVYWTDISEPS------IGRASLHGGEPTTII---RQDLGSPEGIALDHLGRTIFWTDS------QLDRI 103 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTE------EEEEESSSCCCEEEE---CTTCCCEEEEEEETTTTEEEEEET------TTTEE
T ss_pred EEEEEecCCCEEEEEECCCCE------EEEEecCCCCcEEEE---ECCCCCccEEEEEecCCeEEEEEC------CCCEE
Q ss_pred EEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEE
Q 012184 133 HFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI 212 (469)
Q Consensus 133 ~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~ 212 (469)
.++++....-..+. ......-...++--.+++||+....... +.|+++++....-..+. ......-...+.
T Consensus 104 ~~~~~~g~~~~~~~---~~~~~~P~~i~vd~~~g~lyv~~~~~~~---~~I~~~~~dg~~~~~~~---~~~~~~P~gia~ 174 (267)
T 1npe_A 104 EVAKMDGTQRRVLF---DTGLVNPRGIVTDPVRGNLYWTDWNRDN---PKIETSHMDGTNRRILA---QDNLGLPNGLTF 174 (267)
T ss_dssp EEEETTSCSCEEEE---CSSCSSEEEEEEETTTTEEEEEECCSSS---CEEEEEETTSCCCEEEE---CTTCSCEEEEEE
T ss_pred EEEEcCCCCEEEEE---ECCCCCccEEEEeeCCCEEEEEECCCCC---cEEEEEecCCCCcEEEE---ECCCCCCcEEEE
Q ss_pred EE-CCEEEEEecCCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEE
Q 012184 213 TI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMR 291 (469)
Q Consensus 213 ~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d 291 (469)
.- ++.||+.-.. .+.+++||+....-..+.. ....| +.++.. ++.||+.-..++. ++++|
T Consensus 175 d~~~~~lyv~d~~-----~~~I~~~~~~g~~~~~~~~-~~~~P-----~gi~~d----~~~lyva~~~~~~----v~~~d 235 (267)
T 1npe_A 175 DAFSSQLCWVDAG-----THRAECLNPAQPGRRKVLE-GLQYP-----FAVTSY----GKNLYYTDWKTNS----VIAMD 235 (267)
T ss_dssp ETTTTEEEEEETT-----TTEEEEEETTEEEEEEEEE-CCCSE-----EEEEEE----TTEEEEEETTTTE----EEEEE
T ss_pred cCCCCEEEEEECC-----CCEEEEEecCCCceEEEec-CCCCc-----eEEEEe----CCEEEEEECCCCe----EEEEe
Q ss_pred CCCCC
Q 012184 292 LKPRD 296 (469)
Q Consensus 292 ~~~~~ 296 (469)
+.+..
T Consensus 236 ~~~g~ 240 (267)
T 1npe_A 236 LAISK 240 (267)
T ss_dssp TTTTE
T ss_pred CCCCC
No 473
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=56.70 E-value=42 Score=26.96 Aligned_cols=52 Identities=23% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc
Q 012184 409 CFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSGG 460 (469)
Q Consensus 409 ~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~~~~~~q~q~~~~ 460 (469)
.++.+...+|..+.+..+++..++++++..|......-.++=+++..|+.++
T Consensus 4 ~qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~RN~~~e~~~~~~ 55 (155)
T 2aze_A 4 AQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRP 55 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
No 474
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=56.08 E-value=8 Score=34.45 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 012184 400 GQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQK 440 (469)
Q Consensus 400 ~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~ 440 (469)
..+..++++.++|+++++++++++.+.+++++|.++|++.+
T Consensus 19 ~~~~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 19 VDLKNTYTENQHLKERLEELAQLESEVADLKKENKDLKESL 59 (255)
T ss_dssp -------CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 475
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=56.05 E-value=73 Score=25.15 Aligned_cols=68 Identities=9% Similarity=0.020 Sum_probs=0.0
Q ss_pred hhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 012184 374 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS 441 (469)
Q Consensus 374 ~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~ 441 (469)
...+++-+..............+.++.++..+++++.+++..++.++..+...++.....++.....+
T Consensus 62 L~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~~ 129 (142)
T 3gp4_A 62 IEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDFN 129 (142)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
No 476
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=55.91 E-value=41 Score=32.09 Aligned_cols=89 Identities=18% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 012184 360 KRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQ 439 (469)
Q Consensus 360 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~ 439 (469)
...++..+.....++..+++.++..++....+++.++..+.-...-.+ -.+-.+..-+++.+++++.+......++.|
T Consensus 304 ~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e~~~~~~~~~~~~~~~~~q 381 (406)
T 4dyl_A 304 VESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEEENTHPRER--VQLLGKRQVLQEALQGLQVALCSQAKLQAQ 381 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCG--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchH--HHHHhHHhhHHHHHHHHHHHHhHHHHHHHH
Q ss_pred HHHHHHHHHHh
Q 012184 440 KSAFEQEMERA 450 (469)
Q Consensus 440 ~~~~~~~~~~~ 450 (469)
++-+++.++++
T Consensus 382 ~~~~~~~~~~~ 392 (406)
T 4dyl_A 382 QELLQTKLEHL 392 (406)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
No 477
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=55.85 E-value=2e+02 Score=30.10 Aligned_cols=224 Identities=9% Similarity=-0.003 Sum_probs=0.0
Q ss_pred CceEEEEccCCceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECCC-----C
Q 012184 15 GVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLET-----N 89 (469)
Q Consensus 15 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~t-----~ 89 (469)
..+..+++....+..+... ...-.+.+.-..++.||+. ......|+++++.. .
T Consensus 404 ~~Ir~i~l~~~~~~~l~~~----------------~~~~~gl~~d~~~~~lY~s------D~~~~~I~~~~l~g~~~~~~ 461 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTSLIPN----------------LRNVVALDTEVASNRIYWS------DLSQRMICSTQLDRAHGVSS 461 (791)
T ss_dssp SSEEEECTTSCCCEEEECS----------------CSSEEEEEEETTTTEEEEE------ETTTTEEEEEEC--------
T ss_pred cceeEeeccCCcceeeecC----------------CCceEEEeecccCCeeEEe------eccceeEEEEeccCCCCCcc
Q ss_pred eEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEE
Q 012184 90 LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLI 169 (469)
Q Consensus 90 ~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~ 169 (469)
....+. .......+.++-.++++||+.-. ..+.|+++++....-..+. ......-...++--.++.||
T Consensus 462 ~~~vi~---~~l~~P~GLAvD~~~~~LY~tD~------~~~~I~v~~ldG~~~~~l~---~~~l~~P~gIaVDp~~g~LY 529 (791)
T 3m0c_C 462 YDTVIS---RDIQAPDGLAVDWIHSNIYWTDS------VLGTVSVADTKGVKRKTLF---RENGSKPRAIVVDPVHGFMY 529 (791)
T ss_dssp CEEEEC---SSCSCCCEEEEETTTTEEEEEET------TTTEEEEEETTSSSEEEEE---ECTTCCEEEEEEETTTTEEE
T ss_pred eeEEEe---cCCCCcceeeeeecCCcEEEEec------CCCeEEEEeCCCCeEEEEE---eCCCCCcceEEEecCCCCEE
Q ss_pred EEecCCCCcccCcEEEEECCCCceEeeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCCcEEEec
Q 012184 170 VFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILT 247 (469)
Q Consensus 170 v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~ 247 (469)
+.--... +.|+++++....-..+ ....-..-.++++- ++.||+.-.. .+.|+++|+....-..+.
T Consensus 530 wtD~g~~----~~I~~~~~dG~~~~~l----v~~~l~~P~GLavD~~~~~LYwaD~~-----~~~I~~~d~dG~~~~~v~ 596 (791)
T 3m0c_C 530 WTDWGTP----AKIKKGGLNGVDIYSL----VTENIQWPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTIL 596 (791)
T ss_dssp EEECSSS----CEEEEEETTSCCEEEE----ECSSCSCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEE
T ss_pred EecCCCC----CeEEEEecCCCceEEE----EeCCCCCceEEEEecCCCeEEEEeCC-----CCcEEEEecCCCceEEEe
Q ss_pred cCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCCCCceEEEEECCCCC
Q 012184 248 SVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD 296 (469)
Q Consensus 248 ~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~~~~~~~~~d~~~~~ 296 (469)
......+ ..+++... .++||+.--.++. |+++|..+..
T Consensus 597 ~~~~~l~---~P~glav~----~~~lYwtD~~~~~----I~~~dk~tG~ 634 (791)
T 3m0c_C 597 EDEKRLA---HPFSLAVF----EDKVFWTDIINEA----IFSANRLTGS 634 (791)
T ss_dssp ECTTTTS---SEEEEEEE----TTEEEEEETTTTE----EEEEETTTCC
T ss_pred cCCCccC---CCCEEEEe----CCEEEEEECCCCE----EEEEeCCCCc
No 478
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=55.51 E-value=29 Score=22.03 Aligned_cols=30 Identities=30% Similarity=0.420 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhh-hHHHHHHHHHHHHHHHHH
Q 012184 416 IAELQKMLESSQ-TIENEVQILRQQKSAFEQ 445 (469)
Q Consensus 416 ~~e~~~~l~~~~-~~e~e~~~~~q~~~~~~~ 445 (469)
++||++.+...+ ..|+|++++++.=++..+
T Consensus 12 ~eEL~~rl~~Ld~~Me~Ei~elr~RY~~KRq 42 (51)
T 2jo8_A 12 VEDLQKRLLALDPMMEQEIEEIRQKYQSKRQ 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHhHh
No 479
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=55.37 E-value=24 Score=23.62 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 012184 420 QKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQ 456 (469)
Q Consensus 420 ~~~l~~~~~~e~e~~~~~q~~~~~~~~~~~~~~~q~q 456 (469)
+++.+.+..|+.+++++..+...+..+++++++...|
T Consensus 26 ~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~~ 62 (63)
T 2dgc_A 26 ARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVGE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 480
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=55.20 E-value=1.3e+02 Score=28.72 Aligned_cols=96 Identities=11% Similarity=0.106 Sum_probs=0.0
Q ss_pred HhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 012184 358 EDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILR 437 (469)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~ 437 (469)
++.+.....-+....+.++|++.+.+.+.++..++..+++++.++.....+.+..+..+..++++...++..-.++.+..
T Consensus 335 ~~ve~~Kki~naevae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~Ki 414 (602)
T 1cii_A 335 EDVEGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKI 414 (602)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q ss_pred HHHHHHHHHHHHhhhh
Q 012184 438 QQKSAFEQEMERATSV 453 (469)
Q Consensus 438 q~~~~~~~~~~~~~~~ 453 (469)
.+.++.+.+.+...+.
T Consensus 415 AE~KrK~dE~~aIKDA 430 (602)
T 1cii_A 415 AEEKRKQDELKATKDA 430 (602)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHH
No 481
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=55.17 E-value=83 Score=25.49 Aligned_cols=107 Identities=11% Similarity=0.169 Sum_probs=0.0
Q ss_pred cchhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhh----------------HHHHHHHHHHHHHHhhhHHH
Q 012184 347 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSE----------------LSKELSSVQGQLVAERSRCF 410 (469)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e----------------~~~el~~~~~~l~~~~~~~~ 410 (469)
..+......|..++..+...-.+-.........++..+...+-. ++..+.+.+++.....+++.
T Consensus 23 k~~~~k~~~le~ek~~l~~~e~~r~k~~~h~~~k~~qlre~~d~gtt~~~i~~m~~yI~llrErea~lEqkVaeq~e~Ve 102 (169)
T 3k29_A 23 KVVKEKRRLLELEQEKLRERESERDKVKNHYMQKIRQLREQLDDGTTSDAILKMKAYIKVVAIQLSEEEEKVNKQKENVL 102 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHhhhh
Q 012184 411 KLEAQIAELQKMLESSQTIENEVQILRQ-QKSAFEQEMERATSV 453 (469)
Q Consensus 411 ~~~~~~~e~~~~l~~~~~~e~e~~~~~q-~~~~~~~~~~~~~~~ 453 (469)
.-++.+++-++.+....+....++...+ .......+.+...++
T Consensus 103 ~e~q~Le~ar~el~qArke~eKfelHrqiwqaE~kre~E~qEEl 146 (169)
T 3k29_A 103 AASKELERAEVELTKRRKEEEKTRLHKEEWMKEALKEEARQEEK 146 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A*
Probab=55.12 E-value=49 Score=33.43 Aligned_cols=133 Identities=20% Similarity=0.219 Sum_probs=0.0
Q ss_pred CCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeec--CCCCCCCcceEEEEEC----CEEEEEecCCCCCC
Q 012184 156 YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIK--GDLVTGRAGHAGITID----ENWYIVGGGDNNNG 229 (469)
Q Consensus 156 ~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~--~~~p~~r~~~~~~~~~----~~l~v~GG~~~~~~ 229 (469)
.++++....+ .+|+|.-........+++|+..+..|...... +.......+++++..+ +..-++-|......
T Consensus 167 ~G~Sa~~~~d--~~v~GApG~~~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sy~GySva~gD~ngDG~~DlvvGAP~~~~ 244 (597)
T 3v4v_A 167 AGISSFYTKD--LIVMGAPGSSYWTGSLFVYNITTNKYKAFLDKQNQVKFGSYLGYSVGAGHFRSQHTTEVVGGAPQHEQ 244 (597)
T ss_dssp BTSSEEECSS--EEEEEETTHHHHTBEEEEEETTTTBCCBBCCTTCCSCTTCCBTSSEEEECSSCTTSCEEEEEETTGGG
T ss_pred CceeeEecCC--ceEEccccccccccceEEEEccCceeeecccccccccccCcCccEEEEEEECCCCCeEEEEecccccC
Q ss_pred cceEEEEECCCCcEEEeccCCCCCCCCCCCcceEEEEEcCCcEEEEEeccCCC----CCceEEEE
Q 012184 230 CQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK----YNNEVFVM 290 (469)
Q Consensus 230 ~~d~~~~d~~~~~W~~~~~~~~~~p~~r~~~s~~~~~~~~~~~l~v~GG~~~~----~~~~~~~~ 290 (469)
...+++|......|.....+.+.....++|.++++.-++++++.=++-|.... ....+++|
T Consensus 245 ~G~V~v~~~~~~~~~~~~~l~G~~~g~~fG~sva~~D~ngDG~~DlvVGap~~~~~~~~G~v~vy 309 (597)
T 3v4v_A 245 IGKAYIFSIDEKELNILHEMKGKKLGSYFGASVCAVDLNADGFSDLLVGAPMQSTIREEGRVFVY 309 (597)
T ss_dssp TCEEEEEEECSSSEEEEEEEECSSTTCCTTSEEEEECTTCSSSCEEEEEETTCCSSSCCCEEEEE
T ss_pred CceEEEEecCCCceeEEEEecccccCCCCcceEEEEeeCCCCCceEEEEcccccCCCcCCeEEEE
No 483
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=54.95 E-value=59 Score=25.62 Aligned_cols=115 Identities=9% Similarity=0.168 Sum_probs=0.0
Q ss_pred HhhcccccccCcccccccccCCCCCccccchhhhHHHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHH
Q 012184 319 YALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSV 398 (469)
Q Consensus 319 ~~~gg~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~ 398 (469)
|.-||.......+.+...+. --...++++.....-.....+-..|..++++......+|..+|..+
T Consensus 20 y~t~~~~~~~~~pDy~~~Yp--------------~I~S~eqR~rYK~~F~~dy~EYk~Lhaev~~v~~~F~~Ld~~L~~l 85 (140)
T 1xaw_A 20 YTTGGESCDELEEDWIREYP--------------PITSDQQRQLYKRNFDTGLQEYKSLQSVLDEINKELSRLDKELDDY 85 (140)
T ss_dssp --------------CTTTSC--------------CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccCCCCCCCCCCcHHHhCC--------------CCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q ss_pred HHHHHHhhhHHHHHHHHHH-----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 012184 399 QGQLVAERSRCFKLEAQIA-----ELQKMLESSQTIENEVQILRQQKSAFEQEM 447 (469)
Q Consensus 399 ~~~l~~~~~~~~~~~~~~~-----e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~ 447 (469)
.....+.+.-.++.++-.+ ..+++.+..+-|...+..+.+..+.-++..
T Consensus 86 ~~~s~e~~~i~~EY~r~k~~K~dp~y~ekK~Rc~yL~~KLsHIK~lI~~YD~~~ 139 (140)
T 1xaw_A 86 REESEEYMAAADEYNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDYDRQK 139 (140)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
No 484
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=54.85 E-value=2.4 Score=34.02 Aligned_cols=83 Identities=12% Similarity=0.129 Sum_probs=0.0
Q ss_pred hhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 012184 373 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATS 452 (469)
Q Consensus 373 ~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~~~~~ 452 (469)
+..++-....+.+....+++.+....+.+++..+..++.+...++ ..-.....++++++++.+.++.++..+..++.-+
T Consensus 10 d~~~i~~~~~~~k~a~~~l~~~~~~~~~el~~~~~el~~~~~~lq-~~ls~~~~~~~~~el~~~~~~~q~~~~~~~~~l~ 88 (143)
T 1u2m_A 10 NMGSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQ-SMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRA 88 (143)
T ss_dssp CHHHHHHHHHHHHTTTTTTC----------------------------------------------------------CH
T ss_pred eHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hccc
Q 012184 453 VQTQ 456 (469)
Q Consensus 453 ~q~q 456 (469)
..++
T Consensus 89 ~~~~ 92 (143)
T 1u2m_A 89 RRSN 92 (143)
T ss_dssp HHHH
T ss_pred HHHH
No 485
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=54.72 E-value=73 Score=25.64 Aligned_cols=70 Identities=16% Similarity=0.171 Sum_probs=0.0
Q ss_pred hhhhHhhhhhhhcchhhHHHHHHHH----HHHHHHhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012184 374 NSRFREKIDEVNSTHSELSKELSSV----QGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAF 443 (469)
Q Consensus 374 ~~~l~~~~~~~~~~~~e~~~el~~~----~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~~e~e~~~~~q~~~~~ 443 (469)
..+|...++.-..+.+-.++.-.+. +-.+.+.++-.+.++..+-.+..-.+..+.+++.+..++++++++
T Consensus 70 lTqL~nrL~~wlsQ~em~~qks~EFSD~~qTaL~eAQ~AtD~y~~Ainny~~Ads~~~~lekKvn~aq~kLs~L 143 (201)
T 3u0c_A 70 LTALTNKITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSEL 143 (201)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcC
No 486
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=54.46 E-value=28 Score=24.71 Aligned_cols=67 Identities=18% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHhHHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 012184 354 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQ 420 (469)
Q Consensus 354 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~ 420 (469)
..++.....+...++........--..+..+-.-+..++.+.+.++.++..++.+...|+.+++.++
T Consensus 15 ~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 15 DHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 487
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=54.26 E-value=83 Score=29.75 Aligned_cols=153 Identities=15% Similarity=0.117 Sum_probs=0.0
Q ss_pred cCeeeEEE-CCEEEEEc----cccCCCCCcceEEEEECCCCeEEEeecCCCCCCCCcceEEEEECCEEEEEe-------c
Q 012184 54 SDHCMVKW-GTKLLILG----GHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFG-------G 121 (469)
Q Consensus 54 ~~~~~~~~-~~~iy~~G----G~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~G-------G 121 (469)
..|+++.. ++.||.|| |........+...--.+....-..+. ..-....+..+..-++.+|.+| |
T Consensus 182 ~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~---~va~G~~ht~~l~~~G~v~~wG~n~~GqlG 258 (406)
T 4d9s_A 182 AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMS---MVACGWRHTISVSYSGALYTYGWSKYGQLG 258 (406)
T ss_dssp SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEE---EEEECSSEEEEEETTCCEEEEECCTTSTTC
T ss_pred CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEE---EEEECCCcEEEEcCCCCEEEeeCCCCCCCC
Q ss_pred cCCCCCccCcEEEEECCCCeEEEeeeCCCCCCCCCCceEEEEcCcEEEEEe-------cCCCC-cccCcEEEEECCCCce
Q 012184 122 EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG-------GCSHS-IFFNDLHVLDLQTNEW 193 (469)
Q Consensus 122 ~~~~~~~~~~v~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~v~G-------G~~~~-~~~~~i~~~d~~~~~W 193 (469)
.........-..+-.+.......+. .-..|+++...++.+|.+| |.... .......+--+.....
T Consensus 259 ~g~~~~~~~p~~v~~~~~~~v~~i~-------~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v 331 (406)
T 4d9s_A 259 HGDLEDHLIPHKLEALSNSFISQIS-------GGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKV 331 (406)
T ss_dssp SSSCCCEEEEEECGGGTTSCEEEEE-------ECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCE
T ss_pred CCCCcCccccEEecccCCCCEEEEE-------ecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcE
Q ss_pred EeeeecCCCCCCCcceEEEEECCEEEEEe
Q 012184 194 SQPEIKGDLVTGRAGHAGITIDENWYIVG 222 (469)
Q Consensus 194 ~~~~~~~~~p~~r~~~~~~~~~~~l~v~G 222 (469)
..+. .......+..-++.+|..|
T Consensus 332 ~~va------~G~~hs~alt~~G~v~~wG 354 (406)
T 4d9s_A 332 VQVS------CGWRHTLAVTERNNVFAWG 354 (406)
T ss_dssp EEEE------ECSSEEEEEETTSCEEEEE
T ss_pred EEEE------eCCCeEEEEeCCCCEEEec
No 488
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=54.25 E-value=1.4e+02 Score=28.51 Aligned_cols=91 Identities=5% Similarity=0.138 Sum_probs=0.0
Q ss_pred HhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHH
Q 012184 363 LELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-----TIENEVQILR 437 (469)
Q Consensus 363 ~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~-----~~e~e~~~~~ 437 (469)
+...-......+.+|++.+.+..+...........+.+-+.+-+....+.++.+.|...+|+... +....++.++
T Consensus 56 L~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~Ir 135 (491)
T 1m1j_A 56 IDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIK 135 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhh
Q 012184 438 QQKSAFEQEMERATSV 453 (469)
Q Consensus 438 q~~~~~~~~~~~~~~~ 453 (469)
..+..++.++.+.+.+
T Consensus 136 vLq~~l~~q~skIQRL 151 (491)
T 1m1j_A 136 ALQNSIQEQVVEMKRL 151 (491)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
No 489
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=54.18 E-value=51 Score=22.81 Aligned_cols=67 Identities=12% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHhHHHHhhhhhhhhhhhhhh-HhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 012184 354 DAIKEDKRVLELSLTEVRTENSRF-REKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQ 420 (469)
Q Consensus 354 ~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~ 420 (469)
..|.+-+...+......+.+.+.+ +.++++++.....-..++...+.++.+++..++.|+.+++-+.
T Consensus 9 ~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 9 AAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 490
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=54.14 E-value=28 Score=33.54 Aligned_cols=69 Identities=20% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeEeecCC
Q 012184 398 VQGQLVAERSRCFKLEAQIAELQKMLESSQ---TIENEVQILRQQKSAFEQEMERATSVQTQGSGGVWRWIAGG 468 (469)
Q Consensus 398 ~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~---~~e~e~~~~~q~~~~~~~~~~~~~~~q~q~~~~~~~~~~~~ 468 (469)
..+-+..++++..+++.++++++++++.-. +..+++.++.+|+++.++.+.++++.+....++ ..|||.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~lAga 316 (426)
T 1lrz_A 245 FDEYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGKRLQEEHGNE--LPISAG 316 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE--EEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--ceeEEE
No 491
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=54.07 E-value=74 Score=30.69 Aligned_cols=76 Identities=12% Similarity=0.174 Sum_probs=0.0
Q ss_pred hhhHhhhhhhhcchhhH--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHH
Q 012184 375 SRFREKIDEVNSTHSEL--SKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEME 448 (469)
Q Consensus 375 ~~l~~~~~~~~~~~~e~--~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~----~~e~e~~~~~q~~~~~~~~~~ 448 (469)
.+++++.++.++..+|- .+.++..+.++++.+..+.+.+..++++++++...+ .+.-+++..-.++.....+.+
T Consensus 294 ~elkqrqeee~r~~qew~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~ 373 (551)
T 2b5u_A 294 DQVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIK 373 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhh
Q ss_pred Hh
Q 012184 449 RA 450 (469)
Q Consensus 449 ~~ 450 (469)
+.
T Consensus 374 ~f 375 (551)
T 2b5u_A 374 QF 375 (551)
T ss_dssp HH
T ss_pred hh
No 492
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=53.87 E-value=23 Score=18.77 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=0.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHhh
Q 012184 403 VAERSRCFKLEAQIAELQKMLESSQ 427 (469)
Q Consensus 403 ~~~~~~~~~~~~~~~e~~~~l~~~~ 427 (469)
+.+..+|..++..++-++++++..+
T Consensus 4 ealekkcaalesklqalekkleale 28 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=53.75 E-value=3.6 Score=29.82 Aligned_cols=85 Identities=9% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhhhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhh---hHHHHHHHHHH----HHHHHHHHhhhHHHH
Q 012184 360 KRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER---SRCFKLEAQIA----ELQKMLESSQTIENE 432 (469)
Q Consensus 360 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~---~~~~~~~~~~~----e~~~~l~~~~~~e~e 432 (469)
+.+++........+...|..++..+++.+...+.++.+++.+..+.+ +++.-|+.|+. +...+-...+++..|
T Consensus 5 ~~~~~~~~~~~~~ei~~L~~~L~~AEeaL~~KQ~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERaaREk~~~E 84 (96)
T 3fx0_A 5 KSSVVGSERKRGMQLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLAEK 84 (96)
T ss_dssp ---------------------CCSSTTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHH
Q 012184 433 VQILRQQKSAFE 444 (469)
Q Consensus 433 ~~~~~q~~~~~~ 444 (469)
.++++.++.++.
T Consensus 85 Ke~L~~ql~~l~ 96 (96)
T 3fx0_A 85 KELLQEQLEQLQ 96 (96)
T ss_dssp TSCC--------
T ss_pred HHHHHHHHHhhC
No 494
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=53.73 E-value=1.7e+02 Score=30.20 Aligned_cols=170 Identities=10% Similarity=0.029 Sum_probs=0.0
Q ss_pred CEEEcccCCCcccCCceEEEEccC--CceeeeeecccccCCccccCCCCCCCCCCcCeeeEEECCEEEEEcccc------
Q 012184 1 MLLRCSIRNYTLLEGVVMVFDLRS--LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHY------ 72 (469)
Q Consensus 1 l~~~GG~~~~~~~~~~~~~~d~~~--~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy~~GG~~------ 72 (469)
++++=....+.+.+ .++..|... +.|..+.. ++...-+...++.+|+....+
T Consensus 256 ~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~l~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (711)
T 4hvt_A 256 SLIFISANKDFYNY-DNYILDTKYKNLKLQKINM-------------------PSDATLQGSFKEYVFWLLRSDWKFKSH 315 (711)
T ss_dssp SEEEEEEESSSSCE-EEEEEECSSSSCEEEECCS-------------------CTTCEEEEEETTEEEEECSSCEEETTE
T ss_pred EEEEEEEecccCce-eEEEEcCCCCCCcceEeec-------------------CCcceEeeeECCEEEEEECcccccccc
Q ss_pred --CCCCCcceEEEEECCC--------CeEEEeecCCCCCCCCcceEEEEECCEEEEEeccCCCCCccCcEEEEECCCCeE
Q 012184 73 --KKSSDSMIVRFIDLET--------NLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW 142 (469)
Q Consensus 73 --~~~~~~~~~~~~d~~t--------~~W~~~~~~g~~p~~r~~~~~~~~~~~lyi~GG~~~~~~~~~~v~~~d~~t~~W 142 (469)
.... +..+|+.+ ..|+.+- .+-..+.-..+...++.||+..-.+. ...++++|+.++.|
T Consensus 316 ~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~l~~~~~~~~----~~~l~~~~~~~g~~ 384 (711)
T 4hvt_A 316 NIKAGS----LVALHFTDLLKTESDKTSLKILF---TPTANEVFNFISTTKDRVFLATYDNV----VAKVVTFTLENEQW 384 (711)
T ss_dssp EECTTC----EEEEEGGGGGSCGGGCTTCEEEE---CCCTTEEEEEEEECSSCEEEEEEETT----EEEEEEECEETTEE
T ss_pred cCCCCe----EEEEECCcccccccccccceEEE---CCCCCCeEEEEEEECCEEEEEEEECC----EEEEEEEECCCCce
Q ss_pred EEee-eCCCCCCCCCCceEEEEcCcEEEEEecCCCCcccCcEEEEECCCCceEeeeecCCCCCC
Q 012184 143 DAVE-VTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTG 205 (469)
Q Consensus 143 ~~~~-~~g~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~ 205 (469)
.... ..-+........+....++..++.+.+.... ..++.||+. ..+..+........+
T Consensus 385 ~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P---~~~~~~d~~-~~~~~l~~~~~~~~~ 444 (711)
T 4hvt_A 385 TKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVP---PTIYLWVKT-HELKIIRKALYSFDS 444 (711)
T ss_dssp CCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSC---CEEEEECTT-SCEEEEECCSSCCCG
T ss_pred EEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCC---CEEEEEeCC-CcEEEEecCCcccCc
No 495
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=53.73 E-value=60 Score=23.44 Aligned_cols=61 Identities=16% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 012184 391 LSKELSSVQGQLVAERSRCFKLEAQIA----ELQKMLESSQTIENEVQILRQQKSAFEQEMERAT 451 (469)
Q Consensus 391 ~~~el~~~~~~l~~~~~~~~~~~~~~~----e~~~~l~~~~~~e~e~~~~~q~~~~~~~~~~~~~ 451 (469)
++++|.+.++-|...+.+..--.+-+. -|.++..+.++.++++++++-++..+.+.++++.
T Consensus 23 Lq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 23 LQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=53.55 E-value=1.1e+02 Score=26.23 Aligned_cols=86 Identities=16% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHhHHHHhhhhhhhh-hhhhhhHhhhhh--hhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHhh
Q 012184 354 DAIKEDKRVLELSLTEVR-TENSRFREKIDE--VNSTHSELSKELSSVQGQLVAERSRCFKLEAQIA---ELQKMLESSQ 427 (469)
Q Consensus 354 ~~l~~~~~~~~~~~~~~~-~~~~~l~~~~~~--~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~---e~~~~l~~~~ 427 (469)
+.+..+.......++..+ .....++..++. .+....+..+.|-++.+++.+++-....+++..+ |..+.|...-
T Consensus 80 ~~~D~~~~~i~~~ln~~r~~~i~~lk~~Ie~~k~~q~~~~~~~~Lf~~~kEn~al~lEa~yre~~~~v~~EvK~rLDy~v 159 (214)
T 2cly_A 80 EFADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDYHI 159 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHH
Q 012184 428 TIENEVQILRQQ 439 (469)
Q Consensus 428 ~~e~e~~~~~q~ 439 (469)
+.|....+.+|+
T Consensus 160 ~~e~~~r~~eQ~ 171 (214)
T 2cly_A 160 SVQNMMRQKEQE 171 (214)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
No 497
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=53.51 E-value=1.4e+02 Score=27.50 Aligned_cols=194 Identities=11% Similarity=0.037 Sum_probs=0.0
Q ss_pred CceEEEEccCCceeeeeecccccCCccccCCCCCCC-------CCCcCeeeEEECCEEEEEccccCCCCCcceEEEEECC
Q 012184 15 GVVMVFDLRSLAWSNLRLETELDADKTEDSGLLEVL-------PPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLE 87 (469)
Q Consensus 15 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p-------~~r~~~~~~~~~~~iy~~GG~~~~~~~~~~~~~~d~~ 87 (469)
+.+..||+.+++-..--+. + ..-.+.++...+..||+........ +.+||+.
T Consensus 81 ~~v~v~d~~t~~~~~~i~~----------------~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~-----v~v~d~~ 139 (361)
T 2oiz_A 81 DVVEVWDADKLTFEKEISL----------------PPKRVQGLNYDGLFRQTTDGKFIVLQNASPATS-----IGIVDVA 139 (361)
T ss_dssp EEEEEEETTTCCEEEEEEE----------------CTTBCCBCCCGGGEEECTTSSEEEEEEESSSEE-----EEEEETT
T ss_pred CEEEEEECcCCcEEEEEEc----------------CccccccCCCcceEEECCCCCEEEEECCCCCCe-----EEEEECC
Q ss_pred CCeEEEe-ecCCCC------CCCCcceEEEEECCEEEEEeccCCCCCc--------------------------------
Q 012184 88 TNLCGVM-ETSGKV------PVARGGHSVTLVGSRLIIFGGEDRSRKL-------------------------------- 128 (469)
Q Consensus 88 t~~W~~~-~~~g~~------p~~r~~~~~~~~~~~lyi~GG~~~~~~~-------------------------------- 128 (469)
+++-... -..+.. |.....+.+..-++.+.++.-.......
T Consensus 140 ~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 219 (361)
T 2oiz_A 140 KGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSY 219 (361)
T ss_dssp TTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBT
T ss_pred CCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeC
Q ss_pred cCcEEEEECCCCeEEEeeeCCCCC---------CCCCCceEEEEcCcEEEEEec-----CCCCcccCcEEEEECCCCceE
Q 012184 129 LNDVHFLDLETMTWDAVEVTQTPP---------APRYDHSAALHANRYLIVFGG-----CSHSIFFNDLHVLDLQTNEWS 194 (469)
Q Consensus 129 ~~~v~~~d~~t~~W~~~~~~g~~p---------~~r~~~~~~~~~~~~l~v~GG-----~~~~~~~~~i~~~d~~~~~W~ 194 (469)
.+.++.+|+....-....+..... +.-..+.+..-+.+++|+... .......+.++++|+.+.+-.
T Consensus 220 ~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v 299 (361)
T 2oiz_A 220 YGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV 299 (361)
T ss_dssp TSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE
T ss_pred CCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE
Q ss_pred eeeecCCCCCCCcceEEEEE--CCEEEEEecCCCCCCcceEEEEECCCC--c
Q 012184 195 QPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKL--A 242 (469)
Q Consensus 195 ~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~--~ 242 (469)
. ..+.+. .++++.. +..||+.++ +.+.+||+.+. +
T Consensus 300 ~-----~i~~~~-p~~ia~spdg~~l~v~n~-------~~v~v~D~~t~~l~ 338 (361)
T 2oiz_A 300 A-----RIPGRD-ALSMTIDQQRNLMLTLDG-------GNVNVYDISQPEPK 338 (361)
T ss_dssp E-----EEECTT-CCEEEEETTTTEEEEECS-------SCEEEEECSSSSCE
T ss_pred E-----EEecCC-eeEEEECCCCCEEEEeCC-------CeEEEEECCCCcce
No 498
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=53.50 E-value=53 Score=22.74 Aligned_cols=62 Identities=13% Similarity=0.171 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 012184 390 ELSKELSSVQGQLVAE-----RSRCFKLEAQIAELQKM----LESSQTIENEVQILRQQKSAFEQEMERAT 451 (469)
Q Consensus 390 e~~~el~~~~~~l~~~-----~~~~~~~~~~~~e~~~~----l~~~~~~e~e~~~~~q~~~~~~~~~~~~~ 451 (469)
++.+-+.+++.|-... ++-+...+.+++|++.. -..+.....|+.+++..++.++-+++-++
T Consensus 6 DL~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 6 DCTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 499
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=53.42 E-value=48 Score=22.22 Aligned_cols=57 Identities=23% Similarity=0.179 Sum_probs=0.0
Q ss_pred hhhhhhHhhhhhhhcchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Q 012184 372 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQT 428 (469)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~e~~~el~~~~~~l~~~~~~~~~~~~~~~e~~~~l~~~~~ 428 (469)
++...|..++.+.++++..+..=+-.++..|.+-.+-..+++.+.+-.+......++
T Consensus 3 kQNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k 59 (74)
T 2q6q_A 3 QQNKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEK 59 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh
No 500
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=53.35 E-value=13 Score=28.05 Aligned_cols=61 Identities=15% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 012184 396 SSVQGQLVAERSRCFKLEAQIAELQKM--LESSQTIENEVQILRQQKSAFEQEMERATSVQTQ 456 (469)
Q Consensus 396 ~~~~~~l~~~~~~~~~~~~~~~e~~~~--l~~~~~~e~e~~~~~q~~~~~~~~~~~~~~~q~q 456 (469)
+.++++++.+..+++..++.++-...+ -..+-++.+|++.+..+++++.....+.-..+.|
T Consensus 6 e~~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~~lske~~ 68 (123)
T 2lf0_A 6 EVEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKLSKEAQ 68 (123)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Done!