Query 012185
Match_columns 469
No_of_seqs 156 out of 1055
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 04:26:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012185.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012185hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.8 3.4E-21 1.2E-25 200.9 10.9 336 53-462 133-472 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.7 1.9E-17 6.5E-22 170.0 15.2 305 51-452 124-433 (451)
3 3o7q_A L-fucose-proton symport 99.7 4.9E-15 1.7E-19 151.6 23.4 294 49-447 120-427 (438)
4 4aps_A DI-OR tripeptide H+ sym 99.5 1.9E-13 6.5E-18 142.3 19.0 344 50-459 112-478 (491)
5 2gfp_A EMRD, multidrug resista 99.5 4.5E-14 1.5E-18 141.9 12.7 258 52-426 94-352 (375)
6 2cfq_A Lactose permease; trans 99.4 2.5E-13 8.5E-18 139.4 9.2 147 294-464 264-411 (417)
7 2xut_A Proton/peptide symporte 99.1 1.4E-10 4.6E-15 121.8 11.5 96 364-461 407-511 (524)
8 4aps_A DI-OR tripeptide H+ sym 99.0 5.2E-10 1.8E-14 116.2 11.2 184 236-455 11-199 (491)
9 2gfp_A EMRD, multidrug resista 99.0 2.2E-09 7.4E-14 107.5 13.0 179 241-459 3-181 (375)
10 1pw4_A Glycerol-3-phosphate tr 98.9 4.3E-09 1.5E-13 107.5 11.2 183 240-458 30-212 (451)
11 2xut_A Proton/peptide symporte 98.9 1.8E-08 6.1E-13 105.5 15.1 178 236-451 10-197 (524)
12 3o7q_A L-fucose-proton symport 98.8 7.2E-08 2.5E-12 98.0 15.4 148 242-424 30-177 (438)
13 4gc0_A D-xylose-proton symport 98.1 7.7E-06 2.6E-10 84.4 10.0 155 296-456 62-223 (491)
14 2cfq_A Lactose permease; trans 97.9 1.2E-06 4.2E-11 89.2 -0.3 182 238-456 7-191 (417)
15 2g9p_A Antimicrobial peptide l 21.3 44 0.0015 18.8 1.4 13 309-321 3-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.84 E-value=3.4e-21 Score=200.93 Aligned_cols=336 Identities=10% Similarity=0.025 Sum_probs=206.9
Q ss_pred HHHHhccccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhHHhhccccccchhhhhhcccchhhhcccchhHHHHHH
Q 012185 53 FWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLV 132 (469)
Q Consensus 53 ~~llD~a~n~~~~p~rAli~D~~p~~qr~~a~~~~~~~~glG~ilgyl~g~~~~w~~~~~~~~~~~~~~~~~~~~~~f~i 132 (469)
=.+..++.........+|+.|.+|+++|++..++.+....+|.++++.++... ...... .......||..+.+
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~ 205 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFI--ARSGDA-----SWLNTDGWRYMFAS 205 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTSCT-----TTTTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhh--cccccc-----ccccchhhHHHhhh
Confidence 34455666777788999999999999999999999999999999998887541 111000 00012367888888
Q ss_pred HHHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCccCCcccchhhhhhhcccc
Q 012185 133 AVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAE 212 (469)
Q Consensus 133 ~~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (469)
..++.++. .+..+..||+|++...+++.+++++.+++...+. +.+.+..+..+..+
T Consensus 206 ~~~~~~~~-~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~-----------------------~~~~~~~~~~~~~~ 261 (491)
T 4gc0_A 206 ECIPALLF-LMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT-----------------------LATQAVQEIKHSLD 261 (491)
T ss_dssp THHHHHHH-HHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHH
T ss_pred hhhhhhhh-hhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc-----------------------hhHHHHHHHHHHHH
Confidence 77776544 4456789999998776655333222111100000 00000000000000
Q ss_pred ccCCCCCCCccchHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhceeecCCCCCCChhhhhHHHHhHHHH
Q 012185 213 DTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGA 292 (469)
Q Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~mP~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~vf~g~~~~~~~~~~~y~~gv~~G~ 292 (469)
+ .+.... .....+.++.....+...+.++.+.+.+.+|.+.+..+. +.+. .. ..
T Consensus 262 ~--------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----------~~----~~ 315 (491)
T 4gc0_A 262 H--------GRKTGG--RLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTL--GAST----------DI----AL 315 (491)
T ss_dssp H--------HHHHTT--HHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--SCCH----------HH----HH
T ss_pred h--------hhhhhh--HHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhc--CCCc----------cc----hh
Confidence 0 000000 011223344333444455556778888888888765542 1110 01 11
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcccCCCCchhHHHHHHHHHHHh
Q 012185 293 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 372 (469)
Q Consensus 293 ~~l~i~~iv~~i~s~i~~~l~~~ig~r~l~~~s~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (469)
....+.+++..+.+++..+++||+|||+..+.+...++++++..+...... . .........++....+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~-~-----------~~~~~~~~~~~~~~~~ 383 (491)
T 4gc0_A 316 LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ-A-----------PGIVALLSMLFYVAAF 383 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT-C-----------CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc-c-----------chHHHHHHHHHHHHHH
Confidence 233445567788888899999999999999999988888877665543211 0 0111122222333334
Q ss_pred ccchhhhccccchhhhccccCCCCCccchhhHHHHHHHHHHHHHhhccccceeccc----CccchHHHHHHHHHHHHHHH
Q 012185 373 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG----GGNIPAFVLASLSALAGGVV 448 (469)
Q Consensus 373 Gi~~a~~~~vP~aLise~~p~~~~~~G~~~gi~n~~i~l~Qil~s~~~g~l~~~~g----~~~~~~f~~~~v~~liaai~ 448 (469)
+++++ .++|.+.+|.+|.+ -+|+.+|+.+...++..++++..++.+.+... ......|.+.++++++++++
T Consensus 384 ~~~~~---~~~~~~~~E~fPt~--~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 458 (491)
T 4gc0_A 384 AMSWG---PVCWVLLSEIFPNA--IRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALF 458 (491)
T ss_dssp HTTTT---HHHHHHHHHSSCTT--THHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhHHH---HHHHHHHHHhCCHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 44444 45667999999987 56777999999999999999988876654211 11225688889999999999
Q ss_pred hhhcccCCCCCCcc
Q 012185 449 ATLKLPHLSSNSFR 462 (469)
Q Consensus 449 ~~~~vpet~g~~~~ 462 (469)
+++++||||||++.
T Consensus 459 ~~~~~PETkg~tLe 472 (491)
T 4gc0_A 459 MWKFVPETKGKTLE 472 (491)
T ss_dssp HHHHCCCCTTCCHH
T ss_pred HHheecCCCCCCHH
Confidence 99999999999975
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.73 E-value=1.9e-17 Score=170.04 Aligned_cols=305 Identities=12% Similarity=0.104 Sum_probs=202.5
Q ss_pred HHHHHHhccccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhHHhhccccccchhhhhhcccchhhhcccchhHHHH
Q 012185 51 IGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAF 130 (469)
Q Consensus 51 ~g~~llD~a~n~~~~p~rAli~D~~p~~qr~~a~~~~~~~~glG~ilgyl~g~~~~w~~~~~~~~~~~~~~~~~~~~~~f 130 (469)
++..+..++......+..+++.|..|+++|++++++.+...++|.++|..++... ... .++||+.|
T Consensus 124 ~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-----~~~---------~g~w~~~f 189 (451)
T 1pw4_A 124 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG-----MAW---------FNDWHAAL 189 (451)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH-----HHH---------TCCSTTCT
T ss_pred HHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH-----HHH---------hccHHHHH
Confidence 3455566667777888999999999999999999999999999999998887641 110 01377778
Q ss_pred HHHHHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCccCCcccchhhhhhhcc
Q 012185 131 LVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKK 210 (469)
Q Consensus 131 ~i~~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (469)
.+.+++.+++.++..+.+||+|.+....+. ++.++. .+.+.+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------------------------------~~~~~~------- 231 (451)
T 1pw4_A 190 YMPAFCAILVALFAFAMMRDTPQSCGLPPI-EEYKND------------------------------YPDDYN------- 231 (451)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-TTTCCC-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhccCCHhhcCCCCh-hhhccc------------------------------ccccch-------
Confidence 887777666666666678887754322111 000000 000000
Q ss_pred ccccCCCCCCCccchHHHH-HHHhccCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhceeecCCCCCCChhhhhHHHHhH
Q 012185 211 AEDTNGSFNDGPGAVLVNL-LTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVR 289 (469)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~l-~~~~~~mP~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~vf~g~~~~~~~~~~~y~~gv~ 289 (469)
.++ + .....++. ++...+ .+.++.+++..++.++++..+..|.+.|+.+ .++.++ . .
T Consensus 232 ~~~--~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~---------~----~ 289 (451)
T 1pw4_A 232 EKA--E-----QELTAKQIFMQYVLP-NKLLWYIAIANVFVYLLRYGILDWSPTYLKE-VKHFAL---------D----K 289 (451)
T ss_dssp --------------CCTHHHHHHTSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTT-BSCCCH---------H----H
T ss_pred hhh--h-----cccccccchHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCH---------H----H
Confidence 000 0 01111121 222222 4677888888999999999999999998876 333321 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhhc--CchHHHHHHHHHHH-HHHHHHHHHHhhhhcccCCCcccCCCCchhHHHHHH
Q 012185 290 EGAFGLLLNSVVLGVSSFLIEPMCRWI--GSRLVWAISNFIVF-ACMATTAIISVISVREYSGGIEHGIGANQAIKVASL 366 (469)
Q Consensus 290 ~G~~~l~i~~iv~~i~s~i~~~l~~~i--g~r~l~~~s~~~~a-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (469)
.| +...++++...+.+++.+++.||+ |||+++.++.++.+ ++++...+.. + .+.+...
T Consensus 290 ~~-~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--------------~~~~~~~ 350 (451)
T 1pw4_A 290 SS-WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP----A--------------GNPTVDM 350 (451)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCC----T--------------TCHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhc----c--------------cCHHHHH
Confidence 22 344556778888899999999999 99998887766554 3332221111 0 0244455
Q ss_pred HHHHHhccchhhhccccchhhhccccCCCCCccchhhHHHHHHHH-HHHHHhhccccceecccCccchHHHHHHHHHHHH
Q 012185 367 VVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVI-PQMIVSLGAGPWDALFGGGNIPAFVLASLSALAG 445 (469)
Q Consensus 367 ~~~~~~Gi~~a~~~~vP~aLise~~p~~~~~~G~~~gi~n~~i~l-~Qil~s~~~g~l~~~~g~~~~~~f~~~~v~~lia 445 (469)
+...+.|++.+......++++.|..|++ .+|+.+|+.+....+ .+.+.+.+.|.+.+..| ....|.+.+++.+++
T Consensus 351 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~ 426 (451)
T 1pw4_A 351 ICMIVIGFLIYGPVMLIGLHALELAPKK--AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG--WDGGFMVMIGGSILA 426 (451)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHTSCTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHhchh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHH
Confidence 5666677777776666678999999875 689999999999999 99999999999888776 346788888888888
Q ss_pred HHHhhhc
Q 012185 446 GVVATLK 452 (469)
Q Consensus 446 ai~~~~~ 452 (469)
+++.++.
T Consensus 427 ~~~~~~~ 433 (451)
T 1pw4_A 427 VILLIVV 433 (451)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7755543
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.67 E-value=4.9e-15 Score=151.56 Aligned_cols=294 Identities=13% Similarity=0.083 Sum_probs=185.9
Q ss_pred HHHHHHHHhccccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhHHhhccccccchhhhhhcccc------------
Q 012185 49 FVIGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTS------------ 116 (469)
Q Consensus 49 ~v~g~~llD~a~n~~~~p~rAli~D~~p~~qr~~a~~~~~~~~glG~ilgyl~g~~~~w~~~~~~~~~------------ 116 (469)
..++..+.-++......+..+++.|..|+++|+++.++.+...++|.++|..++... ..+..+...+
T Consensus 120 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~ 198 (438)
T 3o7q_A 120 FLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL-ILSNVPHQSQDVLDKMSPEQLS 198 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH-HHTSSCCCCHHHHHHSCHHHHH
T ss_pred HHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccccccccccCCcchhh
Confidence 344566677777888889999999999999999999999999999999999988752 0011000000
Q ss_pred hhhhcccchhHHHHHHHHHHHHHHhhhe-eEEeeccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcc
Q 012185 117 RACCAACGNLKAAFLVAVVFLTLCALVT-IYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVE 195 (469)
Q Consensus 117 ~~~~~~~~~~~~~f~i~~i~~~i~~~it-~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (469)
........+||+.|.+.+++.++..++. ....||++....++ +
T Consensus 199 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~----------------------------------- 242 (438)
T 3o7q_A 199 AYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD-A----------------------------------- 242 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCC-S-----------------------------------
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc-c-----------------------------------
Confidence 0000001128888866555544433332 22233332110000 0
Q ss_pred CCcccchhhhhhhccccccCCCCCCCccchHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhhhhhhh-hhceeecCCC
Q 012185 196 SGHESDANLKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDW-MGREVYHGDP 274 (469)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~mP~~l~~l~~~~f~~w~g~~~~~~y~t~~-vg~~vf~g~~ 274 (469)
+ + ......++++++ .+.++..++..++.+.+...+..|.+.| +.+ .++.++
T Consensus 243 ----------------~---~---~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ 294 (438)
T 3o7q_A 243 ----------------K---Q---GSFSASLSRLAR-----IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEE-IPGMTA 294 (438)
T ss_dssp ----------------S---T---TSHHHHHHHHTT-----CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-STTCCH
T ss_pred ----------------c---c---cchhhhHHHHHh-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCCcch
Confidence 0 0 011223333332 2456777778888888888888888888 654 444331
Q ss_pred CCCChhhhhHHHHhHHHHHHHHHHHHHHHHHHHhHHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcccC
Q 012185 275 KGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHG 354 (469)
Q Consensus 275 ~~~~~~~~~y~~gv~~G~~~l~i~~iv~~i~s~i~~~l~~~ig~r~l~~~s~~~~ai~~~~~~~~~~~~~~~~~~~~~~~ 354 (469)
+ ..| +...++.+...+..++.+++.||+|||+++.++.++.+++++...+..
T Consensus 295 ----------~---~~~-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 346 (438)
T 3o7q_A 295 ----------G---FAA-NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG-------------- 346 (438)
T ss_dssp ----------H---HHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC--------------
T ss_pred ----------h---HHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC--------------
Confidence 1 112 344456677888899999999999999999988887776655444332
Q ss_pred CCCchhHHHHHHHHHHHhccchhhhccccchhhhccccCCCCCccchhhHHHHHHHHHHHHHhhccccceecccCccchH
Q 012185 355 IGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPA 434 (469)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~~~~G~~~gi~n~~i~l~Qil~s~~~g~l~~~~g~~~~~~ 434 (469)
+.. .++.+.+.|++.+....+.++++.|..|++ ++...++.+ ...+.+.+.+.+.|.+.+..|+. ...
T Consensus 347 ------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~-~~~ 414 (438)
T 3o7q_A 347 ------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD---TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNI-PTA 414 (438)
T ss_dssp ------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG---HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSS-GGG
T ss_pred ------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcch-HHH
Confidence 122 233345677777877777888888988864 566677666 55688999999999988887732 356
Q ss_pred HHHHHHHHHHHHH
Q 012185 435 FVLASLSALAGGV 447 (469)
Q Consensus 435 f~~~~v~~liaai 447 (469)
|.+.+++.++..+
T Consensus 415 ~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 415 ELIPALCFAVIFI 427 (438)
T ss_dssp GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655555
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.53 E-value=1.9e-13 Score=142.31 Aligned_cols=344 Identities=10% Similarity=0.026 Sum_probs=182.2
Q ss_pred HHHHHHHhccccccchhHHHHHhcCCCccc--hhhHHHHHHHHHHhhhHHhhccccccchhhhhhcccchhhhcccchhH
Q 012185 50 VIGFWLLDLANNTVQGPARALLADLSGPDQ--RNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLK 127 (469)
Q Consensus 50 v~g~~llD~a~n~~~~p~rAli~D~~p~~q--r~~a~~~~~~~~glG~ilgyl~g~~~~w~~~~~~~~~~~~~~~~~~~~ 127 (469)
+++..+.-++......+..+++.|..|+++ |+++.++++...++|..+|..++... .. ...||
T Consensus 112 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l-----~~----------~~g~~ 176 (491)
T 4aps_A 112 FGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAA-----QE----------AAGYH 176 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH----------HSCHH
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHH-----Hh----------hhhHH
Confidence 345556667777788899999999999988 66788888899999999998887642 11 12588
Q ss_pred HHHHHHHHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCC-C-------CC-CCCCCccCCc
Q 012185 128 AAFLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPA-A-------PN-ANGNKVESGH 198 (469)
Q Consensus 128 ~~f~i~~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~-------~~-~~~~~~~~~~ 198 (469)
+.|.+.++..+++.++..+..|+... + +++.++. ..+..+. .+..+. .+. . .. ...+ +.+.
T Consensus 177 ~~f~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~--~~~~~~~--~~~~~~-~g~~l~~~~~~~~~~~~~~--~~~~ 246 (491)
T 4aps_A 177 VAFSLAAIGMFIGLLVYYFGGKKTLD-P--HYLRPTD--PLAPEEV--KPLLVK-VSLAVAGFIAIIVVMNLVG--WNSL 246 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC-S--CCSCCSC--CCSHHHH--HHHHHH-CCCCCHHHHHHHHHHHHHS--SCCT
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccc-c--cccCCCC--ccccchh--HHHHHH-HHHHHHHHHHHHHHHHhcc--Cccc
Confidence 89988877776666554433333221 1 1110000 0000000 000000 000 0 00 0000 0000
Q ss_pred ccchhhhh-hhccccccCCCCCCCccchHHHHHHHh------ccCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhceeec
Q 012185 199 ESDANLKH-ISKKAEDTNGSFNDGPGAVLVNLLTSL------RHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYH 271 (469)
Q Consensus 199 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~mP~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~vf~ 271 (469)
+....... ..... ....+...++.. ++.......+++..++.|+.+.....+.+.|..+ .++
T Consensus 247 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 315 (491)
T 4aps_A 247 PAYINLLTIVAIAI----------PVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAE-RVD 315 (491)
T ss_dssp THHHHHHHHHHHHH----------HHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHH-SCC
T ss_pred ccchhhhhHHHHHH----------HHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH-Hhc
Confidence 00000000 00000 000000000000 0000113334555666677777666666666655 333
Q ss_pred CCCCCCChhhhhHHHHhHHHHHHHHHHHHHHHHHHHhHHHhhhhcCchHHHH-----HHHHHHHHHHHHHHHHHhhhhcc
Q 012185 272 GDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWA-----ISNFIVFACMATTAIISVISVRE 346 (469)
Q Consensus 272 g~~~~~~~~~~~y~~gv~~G~~~l~i~~iv~~i~s~i~~~l~~~ig~r~l~~-----~s~~~~ai~~~~~~~~~~~~~~~ 346 (469)
.+.. +.+ +.....++...+.+.+.+++.||+|||+... ++.++.++++..+.+......++
T Consensus 316 ~~~~---------~~~-----~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (491)
T 4aps_A 316 SSWF---------PVS-----WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTS 381 (491)
T ss_dssp CSSS---------CSG-----GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCC
T ss_pred cCcc---------CHH-----HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2210 111 2223445566777788899999999986544 56666666655444433110000
Q ss_pred cCCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhhccccCCCCCccchhhHHHHHHHHHHHHHhhccccceec
Q 012185 347 YSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDAL 426 (469)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~~~~G~~~gi~n~~i~l~Qil~s~~~g~l~~~ 426 (469)
+..+.+..++...+.|++.+......++++.|..|++ .+|+.+|+.|....+.+.+.+.+.+.+.+.
T Consensus 382 -----------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~--~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~ 448 (491)
T 4aps_A 382 -----------GKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKA--FNSQMMSMWFLSSSVGSALNAQLVTLYNAK 448 (491)
T ss_dssp -----------TTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT--CSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred -----------CCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0001333445666778888877777788999999986 568889999999999999999888776543
Q ss_pred ccCccchHHHHHHHHHHHHHHHhhhcccCCCCC
Q 012185 427 FGGGNIPAFVLASLSALAGGVVATLKLPHLSSN 459 (469)
Q Consensus 427 ~g~~~~~~f~~~~v~~liaai~~~~~vpet~g~ 459 (469)
+ ....|.+.++++++++++.+...|+++.+
T Consensus 449 -~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 449 -S--EVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp -S--TTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred -c--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23567777888888888777777777664
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.52 E-value=4.5e-14 Score=141.85 Aligned_cols=258 Identities=13% Similarity=0.002 Sum_probs=172.4
Q ss_pred HHHHHhccccccchhHHHHHhcCCCccchhhHHHHHHHHHHhhhHHhhccccccchhhhhhcccchhhhcccchhHHHHH
Q 012185 52 GFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFL 131 (469)
Q Consensus 52 g~~llD~a~n~~~~p~rAli~D~~p~~qr~~a~~~~~~~~glG~ilgyl~g~~~~w~~~~~~~~~~~~~~~~~~~~~~f~ 131 (469)
+..+..++.........+++.|..|+++|++++++.+...++|..+|..++... . + ...||..|.
T Consensus 94 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l-----~----~------~~~~~~~~~ 158 (375)
T 2gfp_A 94 ASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLL-----D----T------MWNWRACYL 158 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHS-----S----C------HHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----H----H------hccHHHHHH
Confidence 334455666677788899999999999999999999999999999999887642 1 0 025888898
Q ss_pred HHHHHHHHHhhheeEEeeccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCccCCcccchhhhhhhccc
Q 012185 132 VAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKA 211 (469)
Q Consensus 132 i~~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (469)
+.++..+++.++..+..||+|.++.++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------- 187 (375)
T 2gfp_A 159 FLLVLCAGVTFSMARWMPETRPVDAPRTR--------------------------------------------------- 187 (375)
T ss_dssp HHHHHHHHHHCCCCCSSCCCSTTTCCCCC---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHCcccCCCCccccc---------------------------------------------------
Confidence 88887777766666778886543211100
Q ss_pred cccCCCCCCCccchHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhceeecCCCCCCChhhhhHHHHhHHH
Q 012185 212 EDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREG 291 (469)
Q Consensus 212 ~~~~~~~~~~~~~~~~~l~~~~~~mP~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~vf~g~~~~~~~~~~~y~~gv~~G 291 (469)
....+++++++ |.++.+++..++.+.+...+..|.+.|+.+ .++. ++ ...|
T Consensus 188 ----------~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~------------~~-~~~g 238 (375)
T 2gfp_A 188 ----------LLTSYKTLFGN-----SGFNCYLLMLIGGLAGIAAFEACSGVLMGA-VLGL------------SS-MTVS 238 (375)
T ss_dssp ----------TTTCSTHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHCSCSSHH-HHHH------------HH-HHHH
T ss_pred ----------HHHHHHHHhcC-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCC------------CH-HHHH
Confidence 01122344443 457778888888888999999888887755 2221 11 1122
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhcCchHHHHHHHHH-HHHHHHHHHHHHhhhhcccCCCcccCCCCchhHHHHHHHHHH
Q 012185 292 AFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFI-VFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFT 370 (469)
Q Consensus 292 ~~~l~i~~iv~~i~s~i~~~l~~~ig~r~l~~~s~~~-~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (469)
+.....++...+.+.+.+++.||+++|. ..+... ..+++....+... . + .+.+..++...
T Consensus 239 -~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~-~-~--------------~~~~~~~~~~~ 299 (375)
T 2gfp_A 239 -ILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWF-G-V--------------MNVWTLLVPAA 299 (375)
T ss_dssp -HHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHH-H-H--------------HHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhh-c-c--------------ccHHHHHHHHH
Confidence 3444566777888888899999987732 222222 1111111111110 0 0 02444556667
Q ss_pred HhccchhhhccccchhhhccccCCCCCccchhhHHHHHHHHHHHHHhhccccceec
Q 012185 371 LLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDAL 426 (469)
Q Consensus 371 ~~Gi~~a~~~~vP~aLise~~p~~~~~~G~~~gi~n~~i~l~Qil~s~~~g~l~~~ 426 (469)
+.|++.+.......+++.|..| + .+|+.+|+.|....+.+.+.+...|.+.+.
T Consensus 300 l~g~~~~~~~~~~~~~~~~~~p-~--~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 352 (375)
T 2gfp_A 300 LFFFGAGMLFPLATSGAMEPFP-F--LAGTAGALVGGLQNIGSGVLASLSAMLPQT 352 (375)
T ss_dssp HHHHHHHHTSSTTHHHHHTHHH-H--HHHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHhCC-c--ccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7888888888888899999998 4 579999999999999988888877776543
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.42 E-value=2.5e-13 Score=139.40 Aligned_cols=147 Identities=13% Similarity=0.092 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcccCCCCchhHHHHHHHHHHHhc
Q 012185 294 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 373 (469)
Q Consensus 294 ~l~i~~iv~~i~s~i~~~l~~~ig~r~l~~~s~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 373 (469)
...+..+...+..++.+++.||+|||++...+.++.+++++...+.. +.+..++...+.+
T Consensus 264 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~l~~ 323 (417)
T 2cfq_A 264 VTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT--------------------SALEVVILKTLHM 323 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC--------------------SHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc--------------------cHHHHHHHHHHHH
Confidence 33445566677788899999999999998888777766544332211 1222333333444
Q ss_pred cchhhhccccchhhhccccCCCCCccchhhH-HHHHHHHHHHHHhhccccceecccCccchHHHHHHHHHHHHHHHhhhc
Q 012185 374 FPLAITYSVPFAITAELTADSGGGQGLAIGV-LNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 452 (469)
Q Consensus 374 i~~a~~~~vP~aLise~~p~~~~~~G~~~gi-~n~~i~l~Qil~s~~~g~l~~~~g~~~~~~f~~~~v~~liaai~~~~~ 452 (469)
+..+.....-+++++|..|++ .+|+..|+ .|....+++++.+...|.+.+..| ....|.+.+++++++++..++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~p~~--~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g--~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 324 FEVPFLLVGCFKYITSQFEVR--FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG--FQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHHHHHHHHHHHHSCHH--HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH--HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444467899999975 67887888 588888999999999998877555 3367888899899998877788
Q ss_pred ccCCCCCCccCC
Q 012185 453 LPHLSSNSFRSS 464 (469)
Q Consensus 453 vpet~g~~~~~~ 464 (469)
+||+|..|.-++
T Consensus 400 ~~~~~~~~~~~~ 411 (417)
T 2cfq_A 400 LSGPGPLSLLRR 411 (417)
T ss_dssp SCCSCTTCSSSS
T ss_pred hcCCCchHHHHH
Confidence 898887776443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.14 E-value=1.4e-10 Score=121.79 Aligned_cols=96 Identities=10% Similarity=0.094 Sum_probs=63.6
Q ss_pred HHHHHHHHhccchhhhccccchhhhccccCCCCCccchhhHHHHHHHHHHHHHhhccccceecccCc---------cchH
Q 012185 364 ASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGG---------NIPA 434 (469)
Q Consensus 364 ~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~~~~G~~~gi~n~~i~l~Qil~s~~~g~l~~~~g~~---------~~~~ 434 (469)
..++...+.|++.+......++++.|..|++ .+|+.+|+.|+...+++++.+.+.|.+.+..+.+ ....
T Consensus 407 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~--~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~ 484 (524)
T 2xut_A 407 WQILPYALLTFGEVLVSATGLEFAYSQAPKA--MKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQ 484 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHCCTT--CCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH--HHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccH
Confidence 3445566778888877777788999999976 6788899999999999999999888876532100 0123
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCCCc
Q 012185 435 FVLASLSALAGGVVATLKLPHLSSNSF 461 (469)
Q Consensus 435 f~~~~v~~liaai~~~~~vpet~g~~~ 461 (469)
|.+.++++++++++.+++.|+++.+..
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (524)
T 2xut_A 485 MFFFAGFAILAAIVFALYARSYQMQDH 511 (524)
T ss_dssp HHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 777777788888767777787776653
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.05 E-value=5.2e-10 Score=116.16 Aligned_cols=184 Identities=13% Similarity=0.073 Sum_probs=138.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcee----ecCCCCCCChhhhhHHHHhHHHHHHHHHHHHHHHHHHHhHHH
Q 012185 236 LPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREV----YHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEP 311 (469)
Q Consensus 236 mP~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~v----f~g~~~~~~~~~~~y~~gv~~G~~~l~i~~iv~~i~s~i~~~ 311 (469)
.|+.++.++...++..++++.+..+.+.|+.+.. ++-++ . ..| +...++.+...+.+.+.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---------~----~~~-~~~~~~~~~~~~~~~~~g~ 76 (491)
T 4aps_A 11 QPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITR---------A----TAA-SIMAIYASMVYLSGTIGGF 76 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCH---------H----HHH-HHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCH---------H----HHH-HHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888888887642 23221 1 122 4556677888899999999
Q ss_pred hhhh-cCchHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhhcc
Q 012185 312 MCRW-IGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAEL 390 (469)
Q Consensus 312 l~~~-ig~r~l~~~s~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~ 390 (469)
+.|| +|||+++.++.++.+++.+..++.. +.+..++...+.|++.+.....-.++++|.
T Consensus 77 l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 136 (491)
T 4aps_A 77 VADRIIGARPAVFWGGVLIMLGHIVLALPF--------------------GASALFGSIILIIIGTGFLKPNVSTLVGTL 136 (491)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHHHHSCC--------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccchHHHHHHHHHHHHHHHHHHHhh--------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 9999 8999999999988887765544332 133455566678888888888888999999
Q ss_pred ccCCCCCccchhhHHHHHHHHHHHHHhhccccceecccCccchHHHHHHHHHHHHHHHhhhcccC
Q 012185 391 TADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPH 455 (469)
Q Consensus 391 ~p~~~~~~G~~~gi~n~~i~l~Qil~s~~~g~l~~~~g~~~~~~f~~~~v~~liaai~~~~~vpe 455 (469)
.|.++|++|..+++.+....+.+++.+.+.+.+.+..| ..+.|.+.++..+++.+...+..|+
T Consensus 137 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 137 YDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG--YHVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp SSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 99876668889999999999999999988888876655 3467888887777777655444343
No 9
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.00 E-value=2.2e-09 Score=107.45 Aligned_cols=179 Identities=12% Similarity=0.124 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhceeecCCCCCCChhhhhHHHHhHHHHHHHHHHHHHHHHHHHhHHHhhhhcCchH
Q 012185 241 HVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRL 320 (469)
Q Consensus 241 ~~l~~~~f~~w~g~~~~~~y~t~~vg~~vf~g~~~~~~~~~~~y~~gv~~G~~~l~i~~iv~~i~s~i~~~l~~~ig~r~ 320 (469)
..+++..++.++++..+..+.+.+..+ ++.++ .+ .| +...++.+...+.+.+.+++.||+|||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~---------~~----~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~ 66 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARD--LNVRE---------GA----VQ-SVMGAYLLTYGVSQLFYGPISDRVGRRP 66 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT--SSSTT---------HH----HH-HHHHHHHHHHHHHHTTHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH--cCCCH---------HH----HH-HHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 346777888888888888777776554 44332 11 22 4455677788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhhccccCCCCCccc
Q 012185 321 VWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGL 400 (469)
Q Consensus 321 l~~~s~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~~~~G~ 400 (469)
++..+.++.+++.....+.. +.+..++...+.|++.+.......++++|..|++ +++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~--------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--~~~~ 124 (375)
T 2gfp_A 67 VILVGMSIFMLATLVAVTTS--------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT--QLRH 124 (375)
T ss_dssp CCHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--SCCS
T ss_pred hHHHHHHHHHHHHHHHHHhc--------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH--HHHH
Confidence 99999999888777666554 2455666777789999988888889999999876 6788
Q ss_pred hhhHHHHHHHHHHHHHhhccccceecccCccchHHHHHHHHHHHHHHHhhhcccCCCCC
Q 012185 401 AIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLSSN 459 (469)
Q Consensus 401 ~~gi~n~~i~l~Qil~s~~~g~l~~~~g~~~~~~f~~~~v~~liaai~~~~~vpet~g~ 459 (469)
.+|+.+....+..++.+...+.+.+..| ....|.+.++..++.++...+.+||++.+
T Consensus 125 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 125 ANSLLNMGILVSPLLAPLIGGLLDTMWN--WRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCHHH--HHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 8999999999999999988888876554 34678888888887777677788987654
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.91 E-value=4.3e-09 Score=107.47 Aligned_cols=183 Identities=16% Similarity=0.093 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhceeecCCCCCCChhhhhHHHHhHHHHHHHHHHHHHHHHHHHhHHHhhhhcCch
Q 012185 240 MHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSR 319 (469)
Q Consensus 240 l~~l~~~~f~~w~g~~~~~~y~t~~vg~~vf~g~~~~~~~~~~~y~~gv~~G~~~l~i~~iv~~i~s~i~~~l~~~ig~r 319 (469)
+..+++..++..+.+..+..+.+.+..+. .++. + .| +...++.+...+.+.+.+++.||+|||
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~---------~----~g-~~~~~~~~~~~~~~~~~G~l~dr~g~r 92 (451)
T 1pw4_A 30 FLGIFFGYAAYYLVRKNFALAMPYLVEQG---FSRG---------D----LG-FALSGISIAYGFSKFIMGSVSDRSNPR 92 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTTSST---TCSS---------C----HH-HHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccHh---------H----HH-HHHHHHHHHHHHHHHhHHHHHHhcCch
Confidence 44566677777777777777777766652 2221 1 22 445567778888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhhccccCCCCCcc
Q 012185 320 LVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQG 399 (469)
Q Consensus 320 ~l~~~s~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~~~~G 399 (469)
+++.++.++++++.+..++..... + +.+..++...+.|++.+.....-.++++|..|++ .+|
T Consensus 93 ~~l~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~--~r~ 154 (451)
T 1pw4_A 93 VFLPAGLILAAAVMLFMGFVPWAT-S---------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK--ERG 154 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHH-S---------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT--HHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcc-c---------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCch--hhh
Confidence 999999999988887776621100 1 1334556667788888888777789999999875 688
Q ss_pred chhhHHHHHHHHHHHHHhhccccceecccCccchHHHHHHHHHHHHHHHhhhcccCCCC
Q 012185 400 LAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLSS 458 (469)
Q Consensus 400 ~~~gi~n~~i~l~Qil~s~~~g~l~~~~g~~~~~~f~~~~v~~liaai~~~~~vpet~g 458 (469)
..+|+.+....+.+++.+.+.+.+.+..|+ ..+.|.+.++++++.++..++.+||++.
T Consensus 155 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~-w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 155 GIVSVWNCAHNVGGGIPPLLFLLGMAWFND-WHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHHTCC-STTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 999999999999999988888877665551 3467888888888887767777887654
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.88 E-value=1.8e-08 Score=105.51 Aligned_cols=178 Identities=13% Similarity=0.015 Sum_probs=127.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhceeec------CCCCCCChhhhhHHHHhHHHHHHHHHHHHHHHHHHHhH
Q 012185 236 LPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYH------GDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLI 309 (469)
Q Consensus 236 mP~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~vf~------g~~~~~~~~~~~y~~gv~~G~~~l~i~~iv~~i~s~i~ 309 (469)
.|+.++.+++..++..++++.+..+.+.|+.++ ++ -++ . ..| +...++.+...+.+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~s~---------~----~~g-~~~~~~~~~~~~~~~~~ 74 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTA-LLLSIPEELRG---------A----VAK-DVFHSFVIGVYFFPLLG 74 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHS-CSSCCSSSTTT---------T----THH-HHHHHHHHHHHHTHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccccccCH---------H----HHH-HHHHHHHHHHHHHHHHH
Confidence 356677788889999999988888888887663 33 121 0 122 44455677788889999
Q ss_pred HHhhhhc-CchHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhh
Q 012185 310 EPMCRWI-GSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITA 388 (469)
Q Consensus 310 ~~l~~~i-g~r~l~~~s~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLis 388 (469)
+++.||+ |||+++.++.++.+++.+...+.. . +.+..++...+.|++.+.....-.++++
T Consensus 75 G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~----~---------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 135 (524)
T 2xut_A 75 GWIADRFFGKYNTILWLSLIYCVGHAFLAIFE----H---------------SVQGFYTGLFLIALGSGGIKPLVSSFMG 135 (524)
T ss_dssp HHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS----S---------------CHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc----c---------------cHHHHHHHHHHHHHhccccchhHHHHHH
Confidence 9999999 999999999988887766555432 0 1344556667788888888778888999
Q ss_pred ccccCCCCCccchh---hHHHHHHHHHHHHHhhccccceecccCccchHHHHHHHHHHHHHHHhhh
Q 012185 389 ELTADSGGGQGLAI---GVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATL 451 (469)
Q Consensus 389 e~~p~~~~~~G~~~---gi~n~~i~l~Qil~s~~~g~l~~~~g~~~~~~f~~~~v~~liaai~~~~ 451 (469)
|..|++ .+|... ++.+....+.+++.+.+.+.+.+..| ....|.+.++..+++.+..++
T Consensus 136 ~~~~~~--~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 136 DQFDQS--NKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG--AAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HTCSTT--TTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC--HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHcCcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHHHHHHH
Confidence 999986 444444 44888999999999988888776554 346788888877777664443
No 12
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.79 E-value=7.2e-08 Score=98.02 Aligned_cols=148 Identities=7% Similarity=-0.102 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhceeecCCCCCCChhhhhHHHHhHHHHHHHHHHHHHHHHHHHhHHHhhhhcCchHH
Q 012185 242 VVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLV 321 (469)
Q Consensus 242 ~l~~~~f~~w~g~~~~~~y~t~~vg~~vf~g~~~~~~~~~~~y~~gv~~G~~~l~i~~iv~~i~s~i~~~l~~~ig~r~l 321 (469)
.++...+..-+....+..+.+.+..+ ++-++ . ..| +...++.+...+.+.+.+++.||+|||++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~----------~---~~g-~~~~~~~~~~~i~~~~~G~l~dr~g~r~~ 93 (438)
T 3o7q_A 30 LLCSLFFLWAVANNLNDILLPQFQQA--FTLTN----------F---QAG-LIQSAFYFGYFIIPIPAGILMKKLSYKAG 93 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCS----------H---HHH-HHHHHHHHHHHTTHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH--cCCCH----------H---HHH-HHHHHHHHHHHHHHHhHHHHHHHhcchHH
Confidence 34455555444555555555554433 44332 1 122 44456777888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhhccccCCCCCccch
Q 012185 322 WAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLA 401 (469)
Q Consensus 322 ~~~s~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~~~~G~~ 401 (469)
+.++.++++++.+...+.... + +.+..++...+.|++.+.....-.++++|..|++ .+|..
T Consensus 94 l~~~~~~~~~~~~~~~~~~~~--~---------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~--~r~~~ 154 (438)
T 3o7q_A 94 IITGLFLYALGAALFWPAAEI--M---------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES--SGHFR 154 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--T---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST--THHHH
T ss_pred HHHHHHHHHHHHHHHHhcccc--c---------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch--hHHHH
Confidence 999999998887766332211 1 2556677778899999988888889999999976 67888
Q ss_pred hhHHHHHHHHHHHHHhhccccce
Q 012185 402 IGVLNLAIVIPQMIVSLGAGPWD 424 (469)
Q Consensus 402 ~gi~n~~i~l~Qil~s~~~g~l~ 424 (469)
+|+.+....+.+++.+.+.+.+.
T Consensus 155 ~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 155 LNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888877
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.10 E-value=7.7e-06 Score=84.38 Aligned_cols=155 Identities=12% Similarity=-0.012 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHhHHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcccCCC-CchhHHHHHHHHHHHhcc
Q 012185 296 LLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIG-ANQAIKVASLVVFTLLGF 374 (469)
Q Consensus 296 ~i~~iv~~i~s~i~~~l~~~ig~r~l~~~s~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Gi 374 (469)
..+.+-..+.+++.+++.||+|||+.+.++.+++.++.++.++........ ......+ .-..+....++.=.+.|+
T Consensus 62 s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~---~~~~~~~~~~a~~~~~l~~~R~l~G~ 138 (491)
T 4gc0_A 62 ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSI---NPDNTVPVYLAGYVPEFVIYRIIGGI 138 (491)
T ss_dssp HTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCS---SSSSSCCGGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhh---cchhHHHHHHhhhHHHHHHHHHHHHH
Confidence 345566778889999999999999999999999988776666432100000 0000000 000135666777778899
Q ss_pred chhhhccccchhhhccccCCCCCccchhhHHHHHHHHHHHHHhhccccceeccc-----Cc-cchHHHHHHHHHHHHHHH
Q 012185 375 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG-----GG-NIPAFVLASLSALAGGVV 448 (469)
Q Consensus 375 ~~a~~~~vP~aLise~~p~~~~~~G~~~gi~n~~i~l~Qil~s~~~g~l~~~~g-----~~-~~~~f~~~~v~~liaai~ 448 (469)
+.+....+-.++++|..|.+ .+|...++.+.+..+.+++.......+....+ .. ....+.+..+.+++..+
T Consensus 139 g~G~~~~~~~~~i~E~~p~~--~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 215 (491)
T 4gc0_A 139 GVGLASMLSPMYIAELAPAH--IRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLM- 215 (491)
T ss_dssp HHHHHHHHHHHHHHTTSCGG--GHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhhCCHH--hhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhh-
Confidence 99988888889999999986 78889999999999998887765544332221 11 11223334444444333
Q ss_pred hhhcccCC
Q 012185 449 ATLKLPHL 456 (469)
Q Consensus 449 ~~~~vpet 456 (469)
..+++||+
T Consensus 216 ~~~~~peS 223 (491)
T 4gc0_A 216 LLYTVPES 223 (491)
T ss_dssp HGGGSCCC
T ss_pred hhhcCCCC
Confidence 55678885
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=97.92 E-value=1.2e-06 Score=89.23 Aligned_cols=182 Identities=13% Similarity=0.053 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhceeecCCCCCCChhhhhHHHHhHHHHHHHHHHHHHHHHHHHhHHHhhhhcC
Q 012185 238 PAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIG 317 (469)
Q Consensus 238 ~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~vf~g~~~~~~~~~~~y~~gv~~G~~~l~i~~iv~~i~s~i~~~l~~~ig 317 (469)
|.++.++...++.++++..++.|.+.|+.++ ++-++. + .| +.+.++.+...+.+.+.+++.||+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~s~~---------~----~g-~~~~~~~~~~~i~~~~~G~lsDr~G 71 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDI-NHISKS---------D----TG-IIFAAISLFSLLFQPLFGLLSDKLG 71 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTT-TCCCTT---------T----SH-HHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHH---------H----HH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777777888888888888888887653 333321 1 22 3444566788888999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHH---HHHhhhhcccCCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhhccccCC
Q 012185 318 SRLVWAISNFIVFACMATTA---IISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADS 394 (469)
Q Consensus 318 ~r~l~~~s~~~~ai~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~ 394 (469)
||+++.++.++++++..... +.... ....+....+.|+..+.......+++.++.++.
T Consensus 72 rr~~l~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 132 (417)
T 2cfq_A 72 LRKYLLWIITGMLVMFAPFFIFIFGPLL-------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV 132 (417)
T ss_dssp TCCHHHHHHHHTTSCHHHHHHHTHHHHH-------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 99999988776654321111 11100 000111122233333322222223444444332
Q ss_pred CCCccchhhHHHHHHHHHHHHHhhccccceecccCccchHHHHHHHHHHHHHHHhhhcccCC
Q 012185 395 GGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHL 456 (469)
Q Consensus 395 ~~~~G~~~gi~n~~i~l~Qil~s~~~g~l~~~~g~~~~~~f~~~~v~~liaai~~~~~vpet 456 (469)
.|.+|..+|..+....+...+.+.+.+.+.+. + ....|+++++..++..+..++..||+
T Consensus 133 ~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~-~--~~~~f~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T 2cfq_A 133 SRRSNFEFGRARMFGCVGWALGASIVGIMFTI-N--NQFVFWLGSGCALILAVLLFFAKTDA 191 (417)
T ss_dssp HHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-C--SHHHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-c--hhHHHHHHHHHHHHHHHHHHHcCccc
Confidence 23456667777666666666666666655542 2 23567777766655555343444554
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=21.25 E-value=44 Score=18.83 Aligned_cols=13 Identities=8% Similarity=0.322 Sum_probs=10.7
Q ss_pred HHHhhhhcCchHH
Q 012185 309 IEPMCRWIGSRLV 321 (469)
Q Consensus 309 ~~~l~~~ig~r~l 321 (469)
.+.+++++|||.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 4788999999974
Done!