BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012186
         (469 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225463572|ref|XP_002270172.1| PREDICTED: F-box/LRR-repeat protein 14 [Vitis vinifera]
 gi|297743556|emb|CBI36423.3| unnamed protein product [Vitis vinifera]
          Length = 578

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/469 (79%), Positives = 424/469 (90%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRDISQQIFNELV+S+CLT+VSL+AF+DCALQD+ LG+YPGV+D WMDVI+SQG SLL
Sbjct: 76  MLPRDISQQIFNELVFSQCLTDVSLKAFQDCALQDIYLGEYPGVSDSWMDVISSQGVSLL 135

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLSGS++T+SGLIHLKDC+NLQ+L+ N+C QISD GL+H+ GLSNLT+LSFRRNNAIT
Sbjct: 136 SVDLSGSEITNSGLIHLKDCTNLQALNLNYCDQISDHGLKHISGLSNLTTLSFRRNNAIT 195

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           AQGM AF+ L+NLVKLDLERC  IHGGL++LKGL KLESLNI  C+CITD+D+KPLSGLT
Sbjct: 196 AQGMSAFSSLVNLVKLDLERCPGIHGGLIHLKGLTKLESLNINMCHCITDADLKPLSGLT 255

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NLK L+IS SKVTD G+AYLKGL KL LLN+EGCPVTAACL+SLS L SL  LNLNR  L
Sbjct: 256 NLKGLEISRSKVTDDGVAYLKGLHKLALLNMEGCPVTAACLESLSDLPSLLSLNLNRSML 315

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           SDDGCE F++  +L+VLNLGFN++TD CLVHLKGLTNLESLNLDSC I DEGL NLTGL 
Sbjct: 316 SDDGCENFARQENLRVLNLGFNDLTDACLVHLKGLTNLESLNLDSCRICDEGLANLTGLR 375

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
           +LKCLELSDT+VGS+GLRHLSGL NLESINLSFT ++D  LRKL+ LSSLKSLNLDARQI
Sbjct: 376 HLKCLELSDTEVGSNGLRHLSGLANLESINLSFTAVTDSGLRKLSALSSLKSLNLDARQI 435

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLAALTSLTGLTHLDLFGARITDSG +YLRNFKNL+SLEICGGGLTDAGVK+IKDL+
Sbjct: 436 TDAGLAALTSLTGLTHLDLFGARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLT 495

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
            LT+LNLSQNCNLTDK+LELISGLT LVSL+VSNSRIT+AGL+HL   +
Sbjct: 496 CLTVLNLSQNCNLTDKSLELISGLTALVSLSVSNSRITNAGLQHLKQLK 544



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 111/374 (29%), Positives = 173/374 (46%), Gaps = 80/374 (21%)

Query: 50  DVIASQGSS-------LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
           + I +QG S       L+ +DL        GLIHLK  + L+SL+ N C  I+D  L+ L
Sbjct: 192 NAITAQGMSAFSSLVNLVKLDLERCPGIHGGLIHLKGLTKLESLNINMCHCITDADLKPL 251

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT-------------------- 142
            GL+NL  L   R+  +T  G+    GL  L  L++E C                     
Sbjct: 252 SGLTNLKGLEISRSK-VTDDGVAYLKGLHKLALLNMEGCPVTAACLESLSDLPSLLSLNL 310

Query: 143 -------------------RI---------HGGLVNLKGLMKLESLNIKWC--------- 165
                              R+            LV+LKGL  LESLN+  C         
Sbjct: 311 NRSMLSDDGCENFARQENLRVLNLGFNDLTDACLVHLKGLTNLESLNLDSCRICDEGLAN 370

Query: 166 -------NCITDSD-------MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
                   C+  SD       ++ LSGL NL+S+ +S + VTDSG+  L  L  L  LNL
Sbjct: 371 LTGLRHLKCLELSDTEVGSNGLRHLSGLANLESINLSFTAVTDSGLRKLSALSSLKSLNL 430

Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
           +   +T A L +L++L  L +L+L   +++D G        +L+ L +    +TD  + +
Sbjct: 431 DARQITDAGLAALTSLTGLTHLDLFGARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKN 490

Query: 272 LKGLTNLESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
           +K LT L  LNL  +C + D+ L  ++GL  L  L +S++++ ++GL+HL  L NL+S+ 
Sbjct: 491 IKDLTCLTVLNLSQNCNLTDKSLELISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLT 550

Query: 331 LSFTGISDGSLRKL 344
           L    ++   ++KL
Sbjct: 551 LDSCKVTVNDIKKL 564


>gi|449436168|ref|XP_004135866.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cucumis sativus]
 gi|449509305|ref|XP_004163550.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cucumis sativus]
          Length = 578

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/465 (78%), Positives = 416/465 (89%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRD+SQ I NELVYS+ LT++S++AFRDCALQDL  G+ PGVND W+DVI+SQGSS+L
Sbjct: 76  MLPRDLSQLILNELVYSQLLTDISIQAFRDCALQDLHFGECPGVNDAWIDVISSQGSSVL 135

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLSGS+VTDSGL++L++CSNLQSL+ NFC  ISD GL H+ G S LTSLSFR+N+ IT
Sbjct: 136 SVDLSGSEVTDSGLMNLRNCSNLQSLNLNFCEHISDRGLAHIGGFSRLTSLSFRKNSEIT 195

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           AQGM  FA L+NL++LDLE+C  IHGGLV+L+GL KLESLNIKWCNCITDSD+KPLSGLT
Sbjct: 196 AQGMSVFAHLVNLIRLDLEKCPGIHGGLVHLQGLRKLESLNIKWCNCITDSDIKPLSGLT 255

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NLK LQISCSKVTD+GIAYLKGL KL+LLNLEGCPVTAACL +LSALG+L YLNL+RC +
Sbjct: 256 NLKGLQISCSKVTDAGIAYLKGLHKLSLLNLEGCPVTAACLYTLSALGALQYLNLSRCHI 315

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           +DDG E+FS +G+LK+LNLGFN+ITDECLVHLKGLTNLESLNLDSC I D+GLVNL  L 
Sbjct: 316 TDDGSEQFSGLGALKILNLGFNDITDECLVHLKGLTNLESLNLDSCRIEDDGLVNLKALH 375

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            LKCLELSDT VGS+GLRHLSGL NLE +NLSFT ++D  L+KL+GLSSLKSLNLD RQI
Sbjct: 376 RLKCLELSDTDVGSNGLRHLSGLFNLEKLNLSFTVVTDIGLKKLSGLSSLKSLNLDTRQI 435

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLA+LT L GLTHLDLFGARITDSG  YLRNFKNL+SLEICGGGLTDAGVK+IKDLS
Sbjct: 436 TDIGLASLTGLVGLTHLDLFGARITDSGTNYLRNFKNLQSLEICGGGLTDAGVKNIKDLS 495

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           SL +LNLSQN NLTDK+LELISGLTGLVSLN+SNSRITSAGLRHL
Sbjct: 496 SLMVLNLSQNGNLTDKSLELISGLTGLVSLNISNSRITSAGLRHL 540



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 89/188 (47%), Gaps = 24/188 (12%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-----------------------QISDGG 98
           ++LS +DV  +GL HL    NL+ L+ +F +                       QI+D G
Sbjct: 380 LELSDTDVGSNGLRHLSGLFNLEKLNLSFTVVTDIGLKKLSGLSSLKSLNLDTRQITDIG 439

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
           L  L GL  LT L       IT  G        NL  L++        G+ N+K L  L 
Sbjct: 440 LASLTGLVGLTHLDLF-GARITDSGTNYLRNFKNLQSLEICGGGLTDAGVKNIKDLSSLM 498

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
            LN+     +TD  ++ +SGLT L SL IS S++T +G+ +LK L+ L  L LE C V+A
Sbjct: 499 VLNLSQNGNLTDKSLELISGLTGLVSLNISNSRITSAGLRHLKTLKNLKQLTLEACRVSA 558

Query: 219 ACLDSLSA 226
           + +  L +
Sbjct: 559 SDIKKLQS 566



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
           +DL G+ +TDSG   LRN  NL+SL +  C   ++D G+ HI   S LT L+  +N  +T
Sbjct: 137 VDLSGSEVTDSGLMNLRNCSNLQSLNLNFCEH-ISDRGLAHIGGFSRLTSLSFRKNSEIT 195

Query: 435 DKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
            + + + + L  L+ L++        GL HL   R
Sbjct: 196 AQGMSVFAHLVNLIRLDLEKCPGIHGGLVHLQGLR 230


>gi|359484681|ref|XP_002262830.2| PREDICTED: insulin-like growth factor-binding protein complex acid
           labile subunit-like [Vitis vinifera]
 gi|296084545|emb|CBI25566.3| unnamed protein product [Vitis vinifera]
          Length = 578

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/469 (75%), Positives = 408/469 (86%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRDISQQIF+  V S CLT  SLEAFRDCA+QD+ LG+YP VND WMD+I+SQG SLL
Sbjct: 76  MLPRDISQQIFDNFVDSHCLTSASLEAFRDCAIQDVNLGEYPEVNDSWMDIISSQGLSLL 135

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLSGS VTD GL  LKDCSN+Q L FN+C QIS+ GL+++ GLSNLTSLSF+++N +T
Sbjct: 136 SVDLSGSSVTDDGLSLLKDCSNIQVLSFNYCDQISEPGLKNISGLSNLTSLSFKKSNTVT 195

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           A+GM+AF+ L+NL KLDLERC+RIHGGL++LKGL KLESLNI++C CITDSD+K LSGLT
Sbjct: 196 AEGMRAFSSLVNLAKLDLERCSRIHGGLIHLKGLTKLESLNIRYCKCITDSDLKALSGLT 255

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           +LK LQ+SCS +TD GI+YLKGL KL LL++EGC VT +CLDSLSAL +L YLNLNRC L
Sbjct: 256 SLKELQMSCSNITDIGISYLKGLCKLMLLDVEGCHVTTSCLDSLSALVALSYLNLNRCGL 315

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           SD GCEKFS + +LKVLN+GFN ITD CLVHLKGLTNLESLNLDSC I DEGL NLTGL 
Sbjct: 316 SDVGCEKFSGLKNLKVLNMGFNNITDACLVHLKGLTNLESLNLDSCSIEDEGLANLTGLS 375

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            LKCLELSDT+VGS+GL HLSGLT LES+NLSFT ++D  L+KL GL+SLKSLNLDARQI
Sbjct: 376 LLKCLELSDTKVGSNGLCHLSGLTKLESLNLSFTLVTDSGLKKLCGLTSLKSLNLDARQI 435

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLAA+TSLTGLTHLDLFGARI+D+G   LR+FKNL++LEICGGGLTDAGVK+IK L+
Sbjct: 436 TDAGLAAITSLTGLTHLDLFGARISDAGTNCLRHFKNLQTLEICGGGLTDAGVKNIKGLA 495

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           SLTLLNLSQNCNLTDKTLE+ISGLT LVSLNVSNSRIT+ GL+HL   +
Sbjct: 496 SLTLLNLSQNCNLTDKTLEMISGLTALVSLNVSNSRITNNGLQHLKPLK 544



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 112/332 (33%), Positives = 177/332 (53%), Gaps = 9/332 (2%)

Query: 16  YSRCLTEVSLEAFRD-CALQDLCLGQYPGVNDKWMDVIASQG-SSLLSVDLSGSDVTDSG 73
           Y +C+T+  L+A     +L++L   Q    N   + +   +G   L+ +D+ G  VT S 
Sbjct: 239 YCKCITDSDLKALSGLTSLKEL---QMSCSNITDIGISYLKGLCKLMLLDVEGCHVTTSC 295

Query: 74  LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
           L  L     L  L+ N C  +SD G E   GL NL  L+   NN IT   +    GL NL
Sbjct: 296 LDSLSALVALSYLNLNRC-GLSDVGCEKFSGLKNLKVLNMGFNN-ITDACLVHLKGLTNL 353

Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
             L+L+ C+    GL NL GL  L+ L +     +  + +  LSGLT L+SL +S + VT
Sbjct: 354 ESLNLDSCSIEDEGLANLTGLSLLKCLELSDTK-VGSNGLCHLSGLTKLESLNLSFTLVT 412

Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
           DSG+  L GL  L  LNL+   +T A L ++++L  L +L+L   ++SD G        +
Sbjct: 413 DSGLKKLCGLTSLKSLNLDARQITDAGLAAITSLTGLTHLDLFGARISDAGTNCLRHFKN 472

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
           L+ L +    +TD  + ++KGL +L  LNL  +C + D+ L  ++GL  L  L +S++++
Sbjct: 473 LQTLEICGGGLTDAGVKNIKGLASLTLLNLSQNCNLTDKTLEMISGLTALVSLNVSNSRI 532

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
            ++GL+HL  L NL S++L    ++   +RKL
Sbjct: 533 TNNGLQHLKPLKNLLSLSLESCKVTASEIRKL 564



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 115/231 (49%), Gaps = 40/231 (17%)

Query: 14  LVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSG 73
           LV+ + LT +       C+++D  L    G+            S L  ++LS + V  +G
Sbjct: 344 LVHLKGLTNLESLNLDSCSIEDEGLANLTGL------------SLLKCLELSDTKVGSNG 391

Query: 74  LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
           L HL   + L+SL+ +F + ++D GL+ L GL++L SL+      IT  G+ A   L  L
Sbjct: 392 LCHLSGLTKLESLNLSFTL-VTDSGLKKLCGLTSLKSLNLDARQ-ITDAGLAAITSLTGL 449

Query: 134 VKLDL---------ERCTR---------------IHGGLVNLKGLMKLESLNIKWCNC-I 168
             LDL           C R                  G+ N+KGL  L  LN+   NC +
Sbjct: 450 THLDLFGARISDAGTNCLRHFKNLQTLEICGGGLTDAGVKNIKGLASLTLLNLSQ-NCNL 508

Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
           TD  ++ +SGLT L SL +S S++T++G+ +LK L+ L  L+LE C VTA+
Sbjct: 509 TDKTLEMISGLTALVSLNVSNSRITNNGLQHLKPLKNLLSLSLESCKVTAS 559


>gi|356519276|ref|XP_003528299.1| PREDICTED: F-box/LRR-repeat protein 14-like isoform 1 [Glycine max]
          Length = 577

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/465 (79%), Positives = 405/465 (87%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRDISQ IFN LVYSR LT  SLEAFRDCALQDL LG+Y GVND WM VI+SQGSSLL
Sbjct: 75  MLPRDISQLIFNNLVYSRRLTSASLEAFRDCALQDLYLGEYDGVNDNWMGVISSQGSSLL 134

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLSGSDVTD GL +LKDC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSGSDVTDFGLTYLKDCESLISLNLNYCDQISDRGLECISGLSNLTSLSFRRNDSIS 194

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           AQGM AF+GL+NLVKLDLERC  IHGGLV+L+GL KLESLN+KWCNCITD DMKPLS L 
Sbjct: 195 AQGMSAFSGLVNLVKLDLERCPGIHGGLVHLRGLTKLESLNLKWCNCITDYDMKPLSELA 254

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           +LKSL+IS SKVTD GI++LKGLQKL LLNLEGC VTAACLDSL+ L +L  LNLNRC L
Sbjct: 255 SLKSLEISSSKVTDFGISFLKGLQKLALLNLEGCLVTAACLDSLAELPALSNLNLNRCNL 314

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           SD+GC+K S++ +LKVLNLGFN ITD CLVHLKGLT LESLNLDSC IGDEGLVNL GL 
Sbjct: 315 SDNGCKKISRLENLKVLNLGFNVITDACLVHLKGLTKLESLNLDSCKIGDEGLVNLAGLE 374

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            L CLELSDT+VGS+GL HLSGL++L+ INLSFT ISD SLRKL+GLSSLKSLNLDA QI
Sbjct: 375 QLNCLELSDTEVGSNGLHHLSGLSSLQKINLSFTMISDSSLRKLSGLSSLKSLNLDAYQI 434

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLA LTSLTGLT LDLFGARITD G  YL+ FKNLRSLEICGG LTDAGVK+IK+LS
Sbjct: 435 TDAGLANLTSLTGLTDLDLFGARITDFGTNYLKKFKNLRSLEICGGVLTDAGVKNIKELS 494

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           SL  LNLSQN NLTDKTLELISGLTGLVSLNVSNSRIT+AGL+HL
Sbjct: 495 SLVCLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRITNAGLQHL 539



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 97/197 (49%), Gaps = 27/197 (13%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-----------------------QISDGG 98
           ++LS ++V  +GL HL   S+LQ ++ +F +                       QI+D G
Sbjct: 379 LELSDTEVGSNGLHHLSGLSSLQKINLSFTMISDSSLRKLSGLSSLKSLNLDAYQITDAG 438

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
           L +L  L+ LT L       IT  G        NL  L++        G+ N+K L  L 
Sbjct: 439 LANLTSLTGLTDLDLF-GARITDFGTNYLKKFKNLRSLEICGGVLTDAGVKNIKELSSLV 497

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
            LN+   + +TD  ++ +SGLT L SL +S S++T++G+ +LK L+ L  L LE C VTA
Sbjct: 498 CLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRITNAGLQHLKTLKNLRSLTLESCKVTA 557

Query: 219 ACLDSLSALGSLFYLNL 235
              + +  L S++  NL
Sbjct: 558 ---NDIKKLKSIYLPNL 571


>gi|357458869|ref|XP_003599715.1| F-box/LRR-repeat protein [Medicago truncatula]
 gi|355488763|gb|AES69966.1| F-box/LRR-repeat protein [Medicago truncatula]
          Length = 585

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/473 (74%), Positives = 396/473 (83%), Gaps = 8/473 (1%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRDISQQI N LVYSR LT  SLEAFRDCALQDL LG+Y GV+D WMDVI+SQGSSLL
Sbjct: 75  MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLS SDVTD GL +L+DC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDQISDHGLECISGLSNLTSLSFRRNDSIS 194

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           AQGM AF+ L+NLVKLDLERC  IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS L 
Sbjct: 195 AQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSELA 254

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA--------LGSLFY 232
           +L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+ACLDSLS         L +L  
Sbjct: 255 SLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSLSGCHEHTIPKLPALSN 314

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           LNLNRC +SD GCE+FS++  LKVLNLGFN+I D CL H+KGLT LESLNLDSC IGDEG
Sbjct: 315 LNLNRCNISDRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLESLNLDSCKIGDEG 374

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
           L NL G   L CLELSDT+VG+ GL HLSGL++LE INLSFT +SD  LRKL GLSSLKS
Sbjct: 375 LENLAGHKQLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTVVSDSGLRKLCGLSSLKS 434

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
           LNLDA QITD GLA LTSLTGLT LDLFGARITD G  YL+ FKNLRSLEIC GGLTDAG
Sbjct: 435 LNLDAYQITDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRSLEICSGGLTDAG 494

Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           VK+IK+LSSL  LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RITSAGL+HL
Sbjct: 495 VKNIKELSSLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITSAGLQHL 547



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 149/303 (49%), Gaps = 21/303 (6%)

Query: 168 ITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS 225
           + DS M  +S   ++L S+ +S S VTD G+ YL+  + L  LNL  C  ++   L+ +S
Sbjct: 118 VDDSWMDVISSQGSSLLSVDLSASDVTDFGLTYLQDCRSLISLNLNYCDQISDHGLECIS 177

Query: 226 ALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
            L +L  L+  R   +S  G   FS++ +L  L+L          VHL+GLT LESLN+ 
Sbjct: 178 GLSNLTSLSFRRNDSISAQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMK 237

Query: 285 SCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
            C  I D  +  L+ L +L  LE+S ++V   G+  L GL  L  +NL    ++   L  
Sbjct: 238 WCNCITDSDIKPLSELASLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDS 297

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           L+G                     +  L  L++L+L    I+D G       + L+ L +
Sbjct: 298 LSGCHE----------------HTIPKLPALSNLNLNRCNISDRGCERFSRLEKLKVLNL 341

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
               + D  + H+K L+ L  LNL  +C + D+ LE ++G   L+ L +S++ + + GL 
Sbjct: 342 GFNDIGDRCLAHMKGLTKLESLNL-DSCKIGDEGLENLAGHKQLICLELSDTEVGNHGLE 400

Query: 464 HLN 466
           HL+
Sbjct: 401 HLS 403



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 108/210 (51%), Gaps = 7/210 (3%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
           + D+ ++ +A     L+ ++LS ++V + GL HL   S+L+ ++ +F + +SD GL  L 
Sbjct: 370 IGDEGLENLAGH-KQLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTV-VSDSGLRKLC 427

Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
           GLS+L SL+      IT  G+     L  L  LDL        G   LK    L SL I 
Sbjct: 428 GLSSLKSLNLDAYQ-ITDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRSLEI- 485

Query: 164 WCNC-ITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
            C+  +TD+ +K +  L++L  L +S  S +TD  +  + GL  L  LNL    +T+A L
Sbjct: 486 -CSGGLTDAGVKNIKELSSLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITSAGL 544

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
             L  L +L  L L  C+++ +  +KF  I
Sbjct: 545 QHLKTLKNLRSLTLESCKVTANDIKKFKLI 574


>gi|388500850|gb|AFK38491.1| unknown [Medicago truncatula]
          Length = 577

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/465 (75%), Positives = 393/465 (84%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRDISQQI N LVYSR LT  SLEAFRDCALQDL LG+Y GV+D WMDVI+SQGSSLL
Sbjct: 75  MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLS SDVTD GL +L+DC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDQISDHGLECISGLSNLTSLSFRRNDSIS 194

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           AQGM AF+ L+NLVKLDLERC  IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS L 
Sbjct: 195 AQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSELA 254

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           +L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+ACLDSLS L +L  LNLNRC +
Sbjct: 255 SLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSLSELPALSNLNLNRCNI 314

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           S  GCE+FS++  LKVLNLGFN+I D CL H+KGLT LESLNLDSC IGDEGL NL G  
Sbjct: 315 SGRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLESLNLDSCKIGDEGLENLAGHK 374

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            L CLELSDT+VG+ GL HLSGL++LE INLSFT +SD  LRKL GLSSLKSLNLDA QI
Sbjct: 375 QLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTVVSDSGLRKLCGLSSLKSLNLDAYQI 434

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLA LTSLTGLT LDLFGARITD G  YL+ FKNLR LEIC GGLTDAGVK+IK+LS
Sbjct: 435 TDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRPLEICSGGLTDAGVKNIKELS 494

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           SL  LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RIT AGL+HL
Sbjct: 495 SLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITFAGLQHL 539



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 151/302 (50%), Gaps = 27/302 (8%)

Query: 168 ITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS 225
           + DS M  +S   ++L S+ +S S VTD G+ YL+  + L  LNL  C  ++   L+ +S
Sbjct: 118 VDDSWMDVISSQGSSLLSVDLSASDVTDFGLTYLQDCRSLISLNLNYCDQISDHGLECIS 177

Query: 226 ALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
            L +L  L+  R   +S  G   FS++ +L  L+L          VHL+GLT LESLN+ 
Sbjct: 178 GLSNLTSLSFRRNDSISAQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMK 237

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
            C                 C+  SD       ++ LS L +L S+ +S + ++D  +  L
Sbjct: 238 WCN----------------CITDSD-------IKPLSELASLTSLEISCSKVTDFGISFL 274

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
            GL  L  LNL+   +T   L +L+ L  L++L+L    I+  G       + L+ L + 
Sbjct: 275 RGLQKLALLNLEGCLVTSACLDSLSELPALSNLNLNRCNISGRGCERFSRLEKLKVLNLG 334

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
              + D  + H+K L+ L  LNL  +C + D+ LE ++G   L+ L +S++ + + GL H
Sbjct: 335 FNDIGDRCLAHMKGLTKLESLNL-DSCKIGDEGLENLAGHKQLICLELSDTEVGNHGLEH 393

Query: 465 LN 466
           L+
Sbjct: 394 LS 395



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 107/210 (50%), Gaps = 7/210 (3%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
           + D+ ++ +A     L+ ++LS ++V + GL HL   S+L+ ++ +F + +SD GL  L 
Sbjct: 362 IGDEGLENLAGH-KQLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTV-VSDSGLRKLC 419

Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
           GLS+L SL+      IT  G+     L  L  LDL        G   LK    L  L I 
Sbjct: 420 GLSSLKSLNLDAYQ-ITDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRPLEI- 477

Query: 164 WCNC-ITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
            C+  +TD+ +K +  L++L  L +S  S +TD  +  + GL  L  LNL    +T A L
Sbjct: 478 -CSGGLTDAGVKNIKELSSLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITFAGL 536

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
             L  L +L +L L  C+++ +  +KF  I
Sbjct: 537 QHLKTLKNLRFLTLESCKVTVNDIKKFKLI 566


>gi|224120462|ref|XP_002331054.1| predicted protein [Populus trichocarpa]
 gi|222872984|gb|EEF10115.1| predicted protein [Populus trichocarpa]
          Length = 576

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/465 (73%), Positives = 398/465 (85%), Gaps = 1/465 (0%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRD+SQQIFNELV S  LT  SLEAFRDCALQD+ LG+YPGV D WMDVI+SQGSSLL
Sbjct: 75  MLPRDLSQQIFNELVISHSLTAASLEAFRDCALQDVLLGEYPGVMDSWMDVISSQGSSLL 134

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLS SDVTD+GL  LKDCSNLQ++  N+C  ISD GL+HL GL+N+TSLS +++ ++T
Sbjct: 135 SVDLSDSDVTDAGLGLLKDCSNLQAIALNYCNNISDNGLKHLSGLTNITSLSLKKSCSVT 194

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           A+GM+AF+ L+NL  LD+ERC+ IHGGLV+LKGL KLESLNI+ C CITD DMK +SGLT
Sbjct: 195 AEGMRAFSTLLNLENLDMERCSGIHGGLVHLKGLKKLESLNIRCCKCITDMDMKAISGLT 254

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NLK LQIS + VTD G++YL+GLQKL +LNLEGC +T ACLDS+SAL +L YLNLNRC L
Sbjct: 255 NLKELQISNTNVTDVGVSYLRGLQKLIMLNLEGCNITTACLDSISALATLAYLNLNRCHL 314

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
            DDGC+KFS + +LKVL+L FN++TD CLVHLKGL NLESLNLDSC IGDEG+ NL GL 
Sbjct: 315 PDDGCDKFSGLKNLKVLSLAFNDVTDACLVHLKGLKNLESLNLDSCRIGDEGIANLAGL- 373

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            LK LELSDT VGSSGLRHLSG+ +LE++NLSFT ++DG LRKL+GL+SL+SLNLDARQI
Sbjct: 374 PLKSLELSDTIVGSSGLRHLSGIPHLENLNLSFTLVTDGGLRKLSGLTSLRSLNLDARQI 433

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GL ALTSLTGLT LDLFGARITDSG   L+ FKNL+SLEICGGGLTDAGVK+IKDL 
Sbjct: 434 TDAGLTALTSLTGLTRLDLFGARITDSGTNCLKYFKNLKSLEICGGGLTDAGVKNIKDLV 493

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
            LT+LNLSQN NLTDKTLELISGLT LVSLNVSNS IT+ GLR+L
Sbjct: 494 HLTVLNLSQNTNLTDKTLELISGLTELVSLNVSNSLITNEGLRYL 538



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 115/341 (33%), Positives = 180/341 (52%), Gaps = 6/341 (1%)

Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI--SC 189
           +L+ +DL        GL  LK    L+++ + +CN I+D+ +K LSGLTN+ SL +  SC
Sbjct: 132 SLLSVDLSDSDVTDAGLGLLKDCSNLQAIALNYCNNISDNGLKHLSGLTNITSLSLKKSC 191

Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKF 248
           S VT  G+     L  L  L++E C      L  L  L  L  LN+  C+ ++D   +  
Sbjct: 192 S-VTAEGMRAFSTLLNLENLDMERCSGIHGGLVHLKGLKKLESLNIRCCKCITDMDMKAI 250

Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
           S + +LK L +    +TD  + +L+GL  L  LNL+ C I    L +++ L  L  L L+
Sbjct: 251 SGLTNLKELQISNTNVTDVGVSYLRGLQKLIMLNLEGCNITTACLDSISALATLAYLNLN 310

Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
              +   G    SGL NL+ ++L+F  ++D  L  L GL +L+SLNLD+ +I D G+A L
Sbjct: 311 RCHLPDDGCDKFSGLKNLKVLSLAFNDVTDACLVHLKGLKNLESLNLDSCRIGDEGIANL 370

Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
             L  L  L+L    +  SG  +L    +L +L +    +TD G++ +  L+SL  LNL 
Sbjct: 371 AGLP-LKSLELSDTIVGSSGLRHLSGIPHLENLNLSFTLVTDGGLRKLSGLTSLRSLNLD 429

Query: 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
               +TD  L  ++ LTGL  L++  +RIT +G   L + +
Sbjct: 430 AR-QITDAGLTALTSLTGLTRLDLFGARITDSGTNCLKYFK 469



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 104/315 (33%), Positives = 163/315 (51%), Gaps = 12/315 (3%)

Query: 20  LTEVSLEAFRDCALQDLCLGQYPGVN--DKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL 77
           +T+V +   R   LQ L +    G N     +D I++  ++L  ++L+   + D G    
Sbjct: 266 VTDVGVSYLR--GLQKLIMLNLEGCNITTACLDSISAL-ATLAYLNLNRCHLPDDGCDKF 322

Query: 78  KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
               NL+ L   F   ++D  L HL+GL NL SL+   +  I  +G+   AGL  L  L+
Sbjct: 323 SGLKNLKVLSLAFN-DVTDACLVHLKGLKNLESLNLD-SCRIGDEGIANLAGL-PLKSLE 379

Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
           L        GL +L G+  LE+LN+ +   +TD  ++ LSGLT+L+SL +   ++TD+G+
Sbjct: 380 LSDTIVGSSGLRHLSGIPHLENLNLSF-TLVTDGGLRKLSGLTSLRSLNLDARQITDAGL 438

Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
             L  L  LT L+L G  +T +  + L    +L  L +    L+D G +    +  L VL
Sbjct: 439 TALTSLTGLTRLDLFGARITDSGTNCLKYFKNLKSLEICGGGLTDAGVKNIKDLVHLTVL 498

Query: 258 NLGFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
           NL  N  +TD+ L  + GLT L SLN+ +  I +EGL  L  L NL+ L L   +V +S 
Sbjct: 499 NLSQNTNLTDKTLELISGLTELVSLNVSNSLITNEGLRYLKPLKNLRALTLESCKVTASE 558

Query: 317 LRHL--SGLTNLESI 329
           ++ L  + L NL S+
Sbjct: 559 IKKLQSTELPNLASV 573


>gi|182407840|gb|ACB87911.1| F-box-containing protein 1 [Malus x domestica]
          Length = 580

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/465 (73%), Positives = 410/465 (88%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRD+SQQIFNELV S  LT+VSLEAFRDCAL+D+ LG+YP V D WM VI+SQGSSLL
Sbjct: 78  MLPRDVSQQIFNELVCSNSLTDVSLEAFRDCALEDIGLGEYPDVKDSWMGVISSQGSSLL 137

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLSGS+VTDSGL  LK CSNLQ+L +N+C  +S+ GL+H+ GLSNLTSLSF+R++AI+
Sbjct: 138 SVDLSGSEVTDSGLALLKGCSNLQALAYNYCDHVSEQGLKHISGLSNLTSLSFKRSDAIS 197

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           A+GM+AF+GL+NL KLDLERC+ IHGG V+LKGL KL+SLN++ C CITDSD+K +SGL 
Sbjct: 198 AEGMRAFSGLLNLEKLDLERCSAIHGGFVHLKGLKKLKSLNVRCCRCITDSDLKTISGLI 257

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           +L  LQ+S   +TDSGI+YLKGL KL +LNLEGC VTA+CL S+SAL +L YLNLNRC L
Sbjct: 258 DLNELQLSNCNITDSGISYLKGLHKLRMLNLEGCNVTASCLQSISALVALAYLNLNRCSL 317

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           SD+GC+KFS + +LKVL+LGFNEITD CL++LKGLT+LESLNLDSC IGDEGL NL GL 
Sbjct: 318 SDEGCDKFSGLTNLKVLSLGFNEITDACLMYLKGLTSLESLNLDSCKIGDEGLANLAGLT 377

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
           +LK LELSDT+VGS+GLRHLSGL NLES+NLSFT ++D SL++L+GL+SLKSLNLDARQI
Sbjct: 378 HLKNLELSDTEVGSNGLRHLSGLKNLESLNLSFTLVTDSSLKRLSGLTSLKSLNLDARQI 437

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLAA+TSLTGLTHLDLFGARI+DSGA +L+ FKNL+SLEICGGGLTDAGVK+IKDL 
Sbjct: 438 TDAGLAAITSLTGLTHLDLFGARISDSGANHLKYFKNLQSLEICGGGLTDAGVKNIKDLV 497

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
            LT LN+SQNCNLT+K+LELISGLT LVSLNVSNSRIT+ GL+HL
Sbjct: 498 CLTWLNISQNCNLTNKSLELISGLTALVSLNVSNSRITNEGLQHL 542



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 105/308 (34%), Positives = 159/308 (51%), Gaps = 28/308 (9%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           + LS  ++TDSG+ +LK    L+ L+   C  ++   L+ +  L  L  L+  R  +++ 
Sbjct: 262 LQLSNCNITDSGISYLKGLHKLRMLNLEGC-NVTASCLQSISALVALAYLNLNRC-SLSD 319

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
           +G   F+GL NL  L L         L+ LKGL  LESLN+  C  I D  +  L+GLT+
Sbjct: 320 EGCDKFSGLTNLKVLSLGFNEITDACLMYLKGLTSLESLNLDSCK-IGDEGLANLAGLTH 378

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
           LK+L++S ++V  +G+ +L GL+ L  LNL    VT + L  LS L SL  LNL+  Q++
Sbjct: 379 LKNLELSDTEVGSNGLRHLSGLKNLESLNLSFTLVTDSSLKRLSGLTSLKSLNLDARQIT 438

Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL-- 299
           D G    + +  L  L+L    I+D    HLK   NL+SL +   G+ D G+ N+  L  
Sbjct: 439 DAGLAAITSLTGLTHLDLFGARISDSGANHLKYFKNLQSLEICGGGLTDAGVKNIKDLVC 498

Query: 300 ---------CNL--KCLEL------------SDTQVGSSGLRHLSGLTNLESINLSFTGI 336
                    CNL  K LEL            S++++ + GL+HL  L NL S+ L    +
Sbjct: 499 LTWLNISQNCNLTNKSLELISGLTALVSLNVSNSRITNEGLQHLKPLKNLRSLTLESCKV 558

Query: 337 SDGSLRKL 344
           +   +RKL
Sbjct: 559 TASEIRKL 566



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 155/307 (50%), Gaps = 37/307 (12%)

Query: 168 ITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLS 225
           + DS M  +S   ++L S+ +S S+VTDSG+A LKG   L  L    C  V+   L  +S
Sbjct: 121 VKDSWMGVISSQGSSLLSVDLSGSEVTDSGLALLKGCSNLQALAYNYCDHVSEQGLKHIS 180

Query: 226 ALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
            L +L  L+  R   +S +G   FS                        GL NLE L+L+
Sbjct: 181 GLSNLTSLSFKRSDAISAEGMRAFS------------------------GLLNLEKLDLE 216

Query: 285 SCGIGDEGLVNLTGLC-----NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            C     G V+L GL      N++C       +  S L+ +SGL +L  + LS   I+D 
Sbjct: 217 RCSAIHGGFVHLKGLKKLKSLNVRCCRC----ITDSDLKTISGLIDLNELQLSNCNITDS 272

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            +  L GL  L+ LNL+   +T + L ++++L  L +L+L    ++D G        NL+
Sbjct: 273 GISYLKGLHKLRMLNLEGCNVTASCLQSISALVALAYLNLNRCSLSDEGCDKFSGLTNLK 332

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L +    +TDA + ++K L+SL  LNL  +C + D+ L  ++GLT L +L +S++ + S
Sbjct: 333 VLSLGFNEITDACLMYLKGLTSLESLNL-DSCKIGDEGLANLAGLTHLKNLELSDTEVGS 391

Query: 460 AGLRHLN 466
            GLRHL+
Sbjct: 392 NGLRHLS 398



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 113/238 (47%), Gaps = 43/238 (18%)

Query: 11  FNE-----LVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLS 65
           FNE     L+Y + LT +       C + D  L    G+            + L +++LS
Sbjct: 338 FNEITDACLMYLKGLTSLESLNLDSCKIGDEGLANLAGL------------THLKNLELS 385

Query: 66  GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
            ++V  +GL HL    NL+SL+ +F + ++D  L+ L GL++L SL+      IT  G+ 
Sbjct: 386 DTEVGSNGLRHLSGLKNLESLNLSFTL-VTDSSLKRLSGLTSLKSLNLDARQ-ITDAGLA 443

Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL-------------NIK------WCN 166
           A   L  L  LDL        G  +LK    L+SL             NIK      W N
Sbjct: 444 AITSLTGLTHLDLFGARISDSGANHLKYFKNLQSLEICGGGLTDAGVKNIKDLVCLTWLN 503

Query: 167 C-----ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
                 +T+  ++ +SGLT L SL +S S++T+ G+ +LK L+ L  L LE C VTA+
Sbjct: 504 ISQNCNLTNKSLELISGLTALVSLNVSNSRITNEGLQHLKPLKNLRSLTLESCKVTAS 561


>gi|357468127|ref|XP_003604348.1| F-box/LRR-repeat protein [Medicago truncatula]
 gi|355505403|gb|AES86545.1| F-box/LRR-repeat protein [Medicago truncatula]
          Length = 573

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/467 (74%), Positives = 390/467 (83%), Gaps = 8/467 (1%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRDISQQI N LVYSR LT  SLEAFRDCALQDL LG+Y GV+D WMDVI+SQGSSLL
Sbjct: 75  MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC--IQISDGGLEHLRGLSNLTSLSFRRNNA 118
           SVDLS SDVTD GL +L+DC +L SL+ N+C   QI D  L      SNLTSLSFRRN++
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDKFQIMDWSL------SNLTSLSFRRNDS 188

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           I+AQGM AF+ L+NLVKLDLERC  IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS 
Sbjct: 189 ISAQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSE 248

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           L +L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+ACLDSLS L +L  LNLNRC
Sbjct: 249 LASLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSLSELPALSNLNLNRC 308

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
            +SD GCE+FS++  LKVLNLGFN+I D CL H+KGLT LESLNLDSC IGDEGL NL G
Sbjct: 309 NISDRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLESLNLDSCKIGDEGLENLAG 368

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
              L CLELSDT+VG+ GL HLSGL++LE INLSFT +SD  LRKL GLSSLKSLNLDA 
Sbjct: 369 HKQLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTVVSDSGLRKLCGLSSLKSLNLDAY 428

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
           QITD GLA LTSLTGLT LDLFGARITD G  YL+ FKNLRSLEIC GGLTDAGVK+IK+
Sbjct: 429 QITDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRSLEICSGGLTDAGVKNIKE 488

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           LSSL  LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RITSAGL+HL
Sbjct: 489 LSSLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITSAGLQHL 535



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/300 (31%), Positives = 148/300 (49%), Gaps = 27/300 (9%)

Query: 168 ITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
           + DS M  +S   ++L S+ +S S VTD G+ YL+  + L  LNL  C        SLS 
Sbjct: 118 VDDSWMDVISSQGSSLLSVDLSASDVTDFGLTYLQDCRSLISLNLNYCDKFQIMDWSLSN 177

Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
           L SL +   +   +S  G   FS++ +L  L+L          VHL+GLT LESLN+  C
Sbjct: 178 LTSLSFRRND--SISAQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWC 235

Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
                            C+  SD       ++ LS L +L S+ +S + ++D  +  L G
Sbjct: 236 N----------------CITDSD-------IKPLSELASLTSLEISCSKVTDFGISFLRG 272

Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
           L  L  LNL+   +T   L +L+ L  L++L+L    I+D G       + L+ L +   
Sbjct: 273 LQKLALLNLEGCLVTSACLDSLSELPALSNLNLNRCNISDRGCERFSRLEKLKVLNLGFN 332

Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
            + D  + H+K L+ L  LNL  +C + D+ LE ++G   L+ L +S++ + + GL HL+
Sbjct: 333 DIGDRCLAHMKGLTKLESLNL-DSCKIGDEGLENLAGHKQLICLELSDTEVGNHGLEHLS 391



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 101/195 (51%), Gaps = 6/195 (3%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L+ ++LS ++V + GL HL   S+L+ ++ +F + +SD GL  L GLS+L SL+      
Sbjct: 372 LICLELSDTEVGNHGLEHLSGLSSLEKINLSFTV-VSDSGLRKLCGLSSLKSLNLDAYQ- 429

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC-ITDSDMKPLS 177
           IT  G+     L  L  LDL        G   LK    L SL I  C+  +TD+ +K + 
Sbjct: 430 ITDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRSLEI--CSGGLTDAGVKNIK 487

Query: 178 GLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
            L++L  L +S  S +TD  +  + GL  L  LNL    +T+A L  L  L +L  L L 
Sbjct: 488 ELSSLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITSAGLQHLKTLKNLRSLTLE 547

Query: 237 RCQLSDDGCEKFSKI 251
            C+++ +  +KF  I
Sbjct: 548 SCKVTANDIKKFKLI 562


>gi|297844484|ref|XP_002890123.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335965|gb|EFH66382.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 578

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/465 (77%), Positives = 413/465 (88%), Gaps = 1/465 (0%)

Query: 2   LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
           LPRDISQQIF+ELVYS+ LT  SLEAFRDCA+QDLCLG+YPGVND WMDVI+SQ +SLLS
Sbjct: 76  LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLCLGEYPGVNDDWMDVISSQSTSLLS 135

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           VD SGSD+TDSGL+ LK C+NL+SL+FNFC QIS+ GLEHL GLSNLTSLSFRRN AITA
Sbjct: 136 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLEHLSGLSNLTSLSFRRNAAITA 195

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
           QGM+A + L+N+ KLDLE+C  IHGGLV+L+GL KLESLNIKWCNCITD+DM+PLS LTN
Sbjct: 196 QGMRALSNLVNMKKLDLEKCPGIHGGLVHLRGLTKLESLNIKWCNCITDADMEPLSELTN 255

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQL 240
           L+SLQI CS++TD GI+YLKGL KL LLNLEGC  VTAACLD+L+AL  L +LNLNRC  
Sbjct: 256 LRSLQICCSRITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALTGLMFLNLNRCNF 315

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           SD GCEKFS + +LK+LNLG N IT+ CLVHL+GLT LESLNLDSC IGDEGLV+L+G+ 
Sbjct: 316 SDSGCEKFSDLINLKILNLGMNSITNSCLVHLRGLTKLESLNLDSCRIGDEGLVHLSGML 375

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D  LRKL+GL+SL++LNLDAR +
Sbjct: 376 ELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLDARHV 435

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GL+ALTSLTGLTHLDLFGARITDSG  +LRN K L+SLEICGGGLTD GVK+IKDLS
Sbjct: 436 TDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDLS 495

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           SLTLLNLSQN NLTDKTLELISGLTGLVSLNVSNSR++S+GLRHL
Sbjct: 496 SLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHL 540



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 113/341 (33%), Positives = 171/341 (50%), Gaps = 34/341 (9%)

Query: 38  LGQYPGVNDKWMDVIA-------SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNF 90
           L +   +N KW + I        S+ ++L S+ +  S +TD G+ +LK  + L  L+   
Sbjct: 228 LTKLESLNIKWCNCITDADMEPLSELTNLRSLQICCSRITDIGISYLKGLNKLNLLNLEG 287

Query: 91  CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
           C  ++   L+ L  L+ L  L+  R N  +  G + F+ LINL  L+L   +  +  LV+
Sbjct: 288 CRHVTAACLDTLTALTGLMFLNLNRCN-FSDSGCEKFSDLINLKILNLGMNSITNSCLVH 346

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
           L+GL KLESLN+  C  I D  +  LSG+  LKSL++S ++V  +G+ +L GL  L  +N
Sbjct: 347 LRGLTKLESLNLDSCR-IGDEGLVHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLESIN 405

Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
           L    VT + L  LS L SL  LNL+   ++D G    + +  L  L+L    ITD    
Sbjct: 406 LSFTVVTDSGLRKLSGLTSLRTLNLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTN 465

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNL-------------------------TGLCNLKCL 305
           HL+ L  L+SL +   G+ D G+ N+                         +GL  L  L
Sbjct: 466 HLRNLKKLQSLEICGGGLTDTGVKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSL 525

Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
            +S+++V SSGLRHL  L NL S+ L    +S   +RKL  
Sbjct: 526 NVSNSRVSSSGLRHLKPLKNLRSLTLESCKLSANDIRKLQA 566


>gi|30684506|ref|NP_563980.2| leucine-rich repeat-containing protein [Arabidopsis thaliana]
 gi|23297087|gb|AAN13089.1| unknown protein [Arabidopsis thaliana]
 gi|332191234|gb|AEE29355.1| leucine-rich repeat-containing protein [Arabidopsis thaliana]
          Length = 585

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/465 (77%), Positives = 409/465 (87%), Gaps = 1/465 (0%)

Query: 2   LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
           LPRDISQQIF+ELVYS+ LT  SLEAFRDCA+QDL LG+YPGVND WMDVI+SQ +SLLS
Sbjct: 83  LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLYLGEYPGVNDDWMDVISSQSTSLLS 142

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           VD SGSD+TDSGL+ LK C+NL+SL+FNFC QIS+ GL HL GLSNLTSLSFRRN AITA
Sbjct: 143 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSFRRNAAITA 202

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
           QGM+A + L+NL KLDLE+C  I GGLV+L+ L KLESLNIKWCNCITD+DM+PLS LTN
Sbjct: 203 QGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADMEPLSVLTN 262

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQL 240
           L+SLQI CSK+TD GI+YLKGL KL LLNLEGC  VTAACLD+L+AL  L YLNLNRC  
Sbjct: 263 LRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRCNF 322

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           SD GCEKFS + +LK+LNLG N IT+ CLVHLKGLT LESLNLDSC IGDEGLV+L+G+ 
Sbjct: 323 SDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSGML 382

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D  LRKL+GL+SL++LNLDAR +
Sbjct: 383 ELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLDARHV 442

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GL+ALTSLTGLTHLDLFGARITDSG  +LRN K L+SLEICGGGLTD GVK+IKDLS
Sbjct: 443 TDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDLS 502

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           SLTLLNLSQN NLTDKTLELISGLTGLVSLNVSNSR++S+GLRHL
Sbjct: 503 SLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHL 547



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 116/376 (30%), Positives = 164/376 (43%), Gaps = 81/376 (21%)

Query: 51  VIASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
            I +QG   LS       +DL      D GL+HL+  + L+SL+  +C  I+D  +E L 
Sbjct: 199 AITAQGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADMEPLS 258

Query: 104 GLSNLTSLSF------------------------RRNNAITAQGMKAFAGLINLVKLDLE 139
            L+NL SL                               +TA  +     L  L+ L+L 
Sbjct: 259 VLTNLRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLN 318

Query: 140 RCTRIHGG------------------------LVNLKGLMKLESLNIKWCNCITDSDMKP 175
           RC     G                        LV+LKGL KLESLN+  C  I D  +  
Sbjct: 319 RCNFSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCR-IGDEGLVH 377

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           LSG+  LKSL++S ++V  +G+ +L GL  L  +NL    VT + L  LS L SL  LNL
Sbjct: 378 LSGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNL 437

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           +   ++D G    + +  L  L+L    ITD    HL+ L  L+SL +   G+ D G+ N
Sbjct: 438 DARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKN 497

Query: 296 L-------------------------TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
           +                         +GL  L  L +S+++V SSGLRHL  L NL S+ 
Sbjct: 498 IKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLT 557

Query: 331 LSFTGISDGSLRKLAG 346
           L    +S   +RKL  
Sbjct: 558 LESCKLSANDIRKLQA 573



 Score = 45.8 bits (107), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 89/202 (44%), Gaps = 50/202 (24%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L S++LS ++V  +GL HL   SNL+S++ +F + ++D GL  L GL++L +L+    + 
Sbjct: 384 LKSLELSDTEVGSNGLRHLSGLSNLESINLSFTV-VTDSGLRKLSGLTSLRTLNLDARH- 441

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL-------------NIK-- 163
           +T  G+ A   L  L  LDL        G  +L+ L KL+SL             NIK  
Sbjct: 442 VTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDL 501

Query: 164 ---------WCNCITDSDMKPLSGLT------------------------NLKSLQISCS 190
                      + +TD  ++ +SGLT                        NL+SL +   
Sbjct: 502 SSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTLESC 561

Query: 191 KVTDSGIAYLKGLQKLTLLNLE 212
           K++ + I  L+      L+N  
Sbjct: 562 KLSANDIRKLQATDLPNLVNFR 583


>gi|13507547|gb|AAK28636.1|AF360339_1 unknown protein [Arabidopsis thaliana]
          Length = 585

 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/465 (77%), Positives = 408/465 (87%), Gaps = 1/465 (0%)

Query: 2   LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
           LPRDISQQIF+ELVYS+ LT  SLEAFRDCA+QDL LG+YPGVND WMDVI+SQ +SLLS
Sbjct: 83  LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLYLGEYPGVNDDWMDVISSQSTSLLS 142

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           VD SGSD+TDSGL+ LK C+NL+SL+FNFC QIS+ GL HL GLSNLTSLSFRRN AITA
Sbjct: 143 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSFRRNAAITA 202

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
           QGM+A + L+NL KLDLE+C  I GGLV+L+ L KLESLNIKWCNCITD+DM+PLS LTN
Sbjct: 203 QGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADMEPLSVLTN 262

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQL 240
           L+ LQI CSK+TD GI+YLKGL KL LLNLEGC  VTAACLD+L+AL  L YLNLNRC  
Sbjct: 263 LRRLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRCNF 322

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           SD GCEKFS + +LK+LNLG N IT+ CLVHLKGLT LESLNLDSC IGDEGLV+L+G+ 
Sbjct: 323 SDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSGML 382

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D  LRKL+GL+SL++LNLDAR +
Sbjct: 383 ELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLDARHV 442

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GL+ALTSLTGLTHLDLFGARITDSG  +LRN K L+SLEICGGGLTD GVK+IKDLS
Sbjct: 443 TDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDLS 502

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           SLTLLNLSQN NLTDKTLELISGLTGLVSLNVSNSR++S+GLRHL
Sbjct: 503 SLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHL 547



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 166/341 (48%), Gaps = 34/341 (9%)

Query: 38  LGQYPGVNDKWMDVIASQGSSLLSV-------DLSGSDVTDSGLIHLKDCSNLQSLDFNF 90
           L +   +N KW + I       LSV        +  S +TD G+ +LK  + L  L+   
Sbjct: 235 LTKLESLNIKWCNCITDADMEPLSVLTNLRRLQICCSKITDIGISYLKGLNKLNLLNLEG 294

Query: 91  CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
           C  ++   L+ L  L+ L  L+  R N  +  G + F+ LINL  L+L      +  LV+
Sbjct: 295 CRHVTAACLDTLTALAGLMYLNLNRCN-FSDSGCEKFSDLINLKILNLGMNNITNSCLVH 353

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
           LKGL KLESLN+  C  I D  +  LSG+  LKSL++S ++V  +G+ +L GL  L  +N
Sbjct: 354 LKGLTKLESLNLDSCR-IGDEGLVHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLESIN 412

Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
           L    VT + L  LS L SL  LNL+   ++D G    + +  L  L+L    ITD    
Sbjct: 413 LSFTVVTDSGLRKLSGLTSLRTLNLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTN 472

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNL-------------------------TGLCNLKCL 305
           HL+ L  L+SL +   G+ D G+ N+                         +GL  L  L
Sbjct: 473 HLRNLKKLQSLEICGGGLTDTGVKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSL 532

Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
            +S+++V SSGLRHL  L NL S+ L    +S   +RKL  
Sbjct: 533 NVSNSRVSSSGLRHLKPLKNLRSLTLESCKLSANDIRKLQA 573



 Score = 45.8 bits (107), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 89/202 (44%), Gaps = 50/202 (24%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L S++LS ++V  +GL HL   SNL+S++ +F + ++D GL  L GL++L +L+    + 
Sbjct: 384 LKSLELSDTEVGSNGLRHLSGLSNLESINLSFTV-VTDSGLRKLSGLTSLRTLNLDARH- 441

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL-------------NIK-- 163
           +T  G+ A   L  L  LDL        G  +L+ L KL+SL             NIK  
Sbjct: 442 VTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDL 501

Query: 164 ---------WCNCITDSDMKPLSGLT------------------------NLKSLQISCS 190
                      + +TD  ++ +SGLT                        NL+SL +   
Sbjct: 502 SSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTLESC 561

Query: 191 KVTDSGIAYLKGLQKLTLLNLE 212
           K++ + I  L+      L+N  
Sbjct: 562 KLSANDIRKLQATDLPNLVNFR 583


>gi|255583092|ref|XP_002532313.1| protein binding protein, putative [Ricinus communis]
 gi|223527982|gb|EEF30065.1| protein binding protein, putative [Ricinus communis]
          Length = 597

 Score =  635 bits (1637), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 343/465 (73%), Positives = 395/465 (84%), Gaps = 1/465 (0%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRD+SQQIFNELV S CLT+ +LEAFRDCALQD+ LG+YPGV D WMD+++SQGSSLL
Sbjct: 75  MLPRDLSQQIFNELVISHCLTDATLEAFRDCALQDILLGEYPGVKDSWMDIVSSQGSSLL 134

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLS SDVTD+GL  L+ CS+LQ++  N C  IS+ GL+H+ GL NLTSLSF+R NA+T
Sbjct: 135 SVDLSDSDVTDTGLALLQACSSLQTMILNRCDCISECGLKHISGLKNLTSLSFKRCNAVT 194

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           A+GM+ F+ L+NL KLDLERC +IHGGL +LKGL+KLESLNI+ C CI D DMK LS +T
Sbjct: 195 AEGMRGFSSLVNLEKLDLERCPQIHGGLAHLKGLLKLESLNIRCCKCIEDMDMKALSDIT 254

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NLK LQIS S VTD G++YLKGLQKL +LNLEGC VT ACLDS+SAL +L YLNLNRC L
Sbjct: 255 NLKELQISNSNVTDLGVSYLKGLQKLIMLNLEGCNVTTACLDSISALVALTYLNLNRCNL 314

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           SDDGC KFS + +LKVL+LGFN ITD CLVHLKGL NLE+LNLDSC IGDEGL NLTGL 
Sbjct: 315 SDDGCSKFSGLKNLKVLSLGFNNITDACLVHLKGLMNLENLNLDSCNIGDEGLANLTGL- 373

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            LK LELSDT+VGS+GLRHLSGLT LE++NLSFT ++D  LR+L+GL SL+SLNLDARQI
Sbjct: 374 PLKSLELSDTEVGSNGLRHLSGLTLLENLNLSFTLVTDSGLRRLSGLLSLRSLNLDARQI 433

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLAALT LTGL HLDLFGARI+DSG  YL+ FKNL+SLEICGGGLTD GVK+IKDL 
Sbjct: 434 TDAGLAALTRLTGLIHLDLFGARISDSGTKYLQYFKNLQSLEICGGGLTDDGVKNIKDLV 493

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
            LT+LNLSQN NLTDKTLELISGLT LVSLNVSNS IT+ GL +L
Sbjct: 494 HLTVLNLSQNSNLTDKTLELISGLTELVSLNVSNSLITNEGLHYL 538



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 164/342 (47%), Gaps = 56/342 (16%)

Query: 49  MDVIA-SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN 107
           MD+ A S  ++L  + +S S+VTD G+ +LK    L  L+   C  ++   L+ +  L  
Sbjct: 245 MDMKALSDITNLKELQISNSNVTDLGVSYLKGLQKLIMLNLEGC-NVTTACLDSISALVA 303

Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
           LT L+  R N ++  G   F+GL NL  L L         LV+LKGLM LE+LN+  CN 
Sbjct: 304 LTYLNLNRCN-LSDDGCSKFSGLKNLKVLSLGFNNITDACLVHLKGLMNLENLNLDSCN- 361

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL---------------- 211
           I D  +  L+GL  LKSL++S ++V  +G+ +L GL  L  LNL                
Sbjct: 362 IGDEGLANLTGLP-LKSLELSDTEVGSNGLRHLSGLTLLENLNLSFTLVTDSGLRRLSGL 420

Query: 212 --------EGCPVTAACLDSLSALGSLFYLNLNRCQLSD--------------------- 242
                   +   +T A L +L+ L  L +L+L   ++SD                     
Sbjct: 421 LSLRSLNLDARQITDAGLAALTRLTGLIHLDLFGARISDSGTKYLQYFKNLQSLEICGGG 480

Query: 243 ---DGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
              DG +    +  L VLNL  N  +TD+ L  + GLT L SLN+ +  I +EGL  L  
Sbjct: 481 LTDDGVKNIKDLVHLTVLNLSQNSNLTDKTLELISGLTELVSLNVSNSLITNEGLHYLKP 540

Query: 299 LCNLKCLELSDTQVGSSGLRHL--SGLTNLESINLSFTGISD 338
           L NL+ L L   +V +S +  L  + L NL+  ++  TG+ D
Sbjct: 541 LKNLRSLSLESCKVTASEISKLQSTALPNLKGRDMLGTGVRD 582


>gi|357164542|ref|XP_003580088.1| PREDICTED: insulin-like growth factor-binding protein complex acid
           labile subunit-like [Brachypodium distachyon]
          Length = 580

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 333/465 (71%), Positives = 390/465 (83%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRD+SQQIFNELV    LTE SLEAFRDCALQD+CL +YPGV D WM+V+ASQG SLL
Sbjct: 78  MLPRDLSQQIFNELVEWSYLTEESLEAFRDCALQDICLEEYPGVKDAWMEVVASQGQSLL 137

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVD+S SDVTDSGL  LKDCSN+QSL  N+C QIS+ GL+ L GLSNLTSLS ++  A+T
Sbjct: 138 SVDISCSDVTDSGLDVLKDCSNMQSLACNYCDQISEHGLKTLSGLSNLTSLSLKKCAAVT 197

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           A+G KAFA L+NLV LDLERC +IHGGLV+LKGL KLE+LN+++CNCITDSDMK LS LT
Sbjct: 198 AEGAKAFADLVNLVNLDLERCPKIHGGLVHLKGLRKLETLNMRYCNCITDSDMKYLSDLT 257

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NL+ LQ+SC K++D G++YLKGL KL  LNLEGC VTAACL+++S L SL  LNLNRC +
Sbjct: 258 NLRELQLSCCKISDIGVSYLKGLSKLAHLNLEGCAVTAACLEAISGLASLILLNLNRCGI 317

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
            D+GCE    +  LKVLNLGFN ITD CLVHLK L +LE LNLDSC IGDEGL++L GL 
Sbjct: 318 YDEGCENLEGLVKLKVLNLGFNHITDACLVHLKELVSLECLNLDSCKIGDEGLLHLKGLL 377

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            L+ LELSDT+VGS+GLRHLSGL NL+S+NLSFT ++D  L+K+AGL+SLKSLNLD RQI
Sbjct: 378 QLRSLELSDTEVGSNGLRHLSGLRNLQSMNLSFTLVTDIGLKKVAGLNSLKSLNLDNRQI 437

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLAAL  LTGLTHLDLFGARITDSG   LR FK L+SLE+CGG +TDAGVK+IKDL 
Sbjct: 438 TDNGLAALAGLTGLTHLDLFGARITDSGTNCLRYFKELQSLELCGGLITDAGVKNIKDLK 497

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           +LTLLNLSQN NLTD+TLELISGLT LVSLN+SN+R+++AGL HL
Sbjct: 498 ALTLLNLSQNGNLTDRTLELISGLTALVSLNLSNTRVSNAGLHHL 542



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 102/291 (35%), Positives = 148/291 (50%), Gaps = 26/291 (8%)

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ 239
           +L S+ ISCS VTDSG+  LK    +  L    C  ++   L +LS L +L  L+L +C 
Sbjct: 135 SLLSVDISCSDVTDSGLDVLKDCSNMQSLACNYCDQISEHGLKTLSGLSNLTSLSLKKCA 194

Query: 240 -LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
            ++ +G + F+ + +L  L+L         LVHLKGL  LE+LN+  C            
Sbjct: 195 AVTAEGAKAFADLVNLVNLDLERCPKIHGGLVHLKGLRKLETLNMRYCN----------- 243

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
                C+  SD       +++LS LTNL  + LS   ISD  +  L GLS L  LNL+  
Sbjct: 244 -----CITDSD-------MKYLSDLTNLRELQLSCCKISDIGVSYLKGLSKLAHLNLEGC 291

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
            +T   L A++ L  L  L+L    I D G   L     L+ L +    +TDA + H+K+
Sbjct: 292 AVTAACLEAISGLASLILLNLNRCGIYDEGCENLEGLVKLKVLNLGFNHITDACLVHLKE 351

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           L SL  LNL  +C + D+ L  + GL  L SL +S++ + S GLRHL+  R
Sbjct: 352 LVSLECLNL-DSCKIGDEGLLHLKGLLQLRSLELSDTEVGSNGLRHLSGLR 401



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/183 (36%), Positives = 102/183 (55%), Gaps = 26/183 (14%)

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           S++LS ++V  +GL HL    NLQS++ +F + ++D GL+ + GL++L SL+   N  IT
Sbjct: 381 SLELSDTEVGSNGLRHLSGLRNLQSMNLSFTL-VTDIGLKKVAGLNSLKSLNLD-NRQIT 438

Query: 121 AQGMKAFAGLINLVKLDL---------ERCTRIH---------GGLV------NLKGLMK 156
             G+ A AGL  L  LDL           C R           GGL+      N+K L  
Sbjct: 439 DNGLAALAGLTGLTHLDLFGARITDSGTNCLRYFKELQSLELCGGLITDAGVKNIKDLKA 498

Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
           L  LN+     +TD  ++ +SGLT L SL +S ++V+++G+ +LK LQ L  L+L+ C V
Sbjct: 499 LTLLNLSQNGNLTDRTLELISGLTALVSLNLSNTRVSNAGLHHLKLLQNLRSLSLDSCKV 558

Query: 217 TAA 219
           TA+
Sbjct: 559 TAS 561


>gi|116310796|emb|CAH67587.1| OSIGBa0112M24.4 [Oryza sativa Indica Group]
 gi|218195159|gb|EEC77586.1| hypothetical protein OsI_16540 [Oryza sativa Indica Group]
          Length = 581

 Score =  622 bits (1604), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 324/465 (69%), Positives = 383/465 (82%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           +LPRD+SQQ+FNELV    LTE  L AFRDCALQD+CL  YPGV D WM+V ASQG SLL
Sbjct: 79  LLPRDLSQQVFNELVEWNILTEELLGAFRDCALQDICLADYPGVRDAWMEVAASQGQSLL 138

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVD+S SDVTD GL  LKDC NLQSL  N+C QIS+ GL+ L GLSN+TSLSF++ +A+T
Sbjct: 139 SVDISCSDVTDGGLNQLKDCINLQSLSCNYCDQISEHGLKTLSGLSNVTSLSFKKCSAVT 198

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           A+G KAFA ++NL  LDLERC +IHGGLV+LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEKLNLRYCNGITDSDMKHLSDLT 258

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NL+ LQ+SC K++D G++YL+GL KL  LNLEGC VTAACL+ +S L SL  LNL+RC +
Sbjct: 259 NLRELQLSCCKISDLGVSYLRGLSKLAHLNLEGCAVTAACLEVISGLASLVLLNLSRCGV 318

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
            D+GCE    +  LKVLNLGFN ITD CLVHLK L NLE LNLDSC IGDEGL +L GL 
Sbjct: 319 YDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKELINLECLNLDSCKIGDEGLAHLKGLL 378

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            L+ LELSDT+VGS+GLRHLSGL NL+SINLSFT ++D  L+K++GL+SL+SLNLD RQI
Sbjct: 379 KLRSLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLNSLRSLNLDNRQI 438

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLAALT LTGLTHLDLFGARITD+G   L+ FKNL+SLE+CGG +TDAGVK+IKDL 
Sbjct: 439 TDNGLAALTCLTGLTHLDLFGARITDAGTNCLKYFKNLQSLEVCGGLITDAGVKNIKDLK 498

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           +LTLLNLSQN NLTDK+LELISGLT LVSLNVSNSR++++GL HL
Sbjct: 499 ALTLLNLSQNGNLTDKSLELISGLTALVSLNVSNSRVSNSGLHHL 543



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 120/326 (36%), Positives = 175/326 (53%), Gaps = 3/326 (0%)

Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 204
           GGL  LK  + L+SL+  +C+ I++  +K LSGL+N+ SL    CS VT  G      + 
Sbjct: 150 GGLNQLKDCINLQSLSCNYCDQISEHGLKTLSGLSNVTSLSFKKCSAVTAEGAKAFANMV 209

Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNE 263
            L  L+LE CP     L  L  L  L  LNL  C  ++D   +  S + +L+ L L   +
Sbjct: 210 NLGSLDLERCPKIHGGLVHLKGLRKLEKLNLRYCNGITDSDMKHLSDLTNLRELQLSCCK 269

Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
           I+D  + +L+GL+ L  LNL+ C +    L  ++GL +L  L LS   V   G  HL GL
Sbjct: 270 ISDLGVSYLRGLSKLAHLNLEGCAVTAACLEVISGLASLVLLNLSRCGVYDEGCEHLEGL 329

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
             L+ +NL F  I+D  L  L  L +L+ LNLD+ +I D GLA L  L  L  L+L    
Sbjct: 330 VKLKVLNLGFNYITDACLVHLKELINLECLNLDSCKIGDEGLAHLKGLLKLRSLELSDTE 389

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
           +  +G  +L   +NL+S+ +    +TD G+K I  L+SL  LNL  N  +TD  L  ++ 
Sbjct: 390 VGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLNSLRSLNL-DNRQITDNGLAALTC 448

Query: 444 LTGLVSLNVSNSRITSAGLRHLNHAR 469
           LTGL  L++  +RIT AG   L + +
Sbjct: 449 LTGLTHLDLFGARITDAGTNCLKYFK 474



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 116/336 (34%), Positives = 172/336 (51%), Gaps = 54/336 (16%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           +TDS + HL D +NL+ L  + C +ISD G+ +LRGLS L  L+     A+TA  ++  +
Sbjct: 246 ITDSDMKHLSDLTNLRELQLS-CCKISDLGVSYLRGLSKLAHLNLE-GCAVTAACLEVIS 303

Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
           GL +LV L+L RC     G  +L+GL+KL+ LN+ + N ITD+ +  L  L NL+ L + 
Sbjct: 304 GLASLVLLNLSRCGVYDEGCEHLEGLVKLKVLNLGF-NYITDACLVHLKELINLECLNLD 362

Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
             K+ D G+A+LKGL KL  L L    V +  L  LS L +L  +NL+   ++D G +K 
Sbjct: 363 SCKIGDEGLAHLKGLLKLRSLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKI 422

Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL----------------------DSC 286
           S + SL+ LNL   +ITD  L  L  LT L  L+L                      + C
Sbjct: 423 SGLNSLRSLNLDNRQITDNGLAALTCLTGLTHLDLFGARITDAGTNCLKYFKNLQSLEVC 482

Query: 287 G--IGDEGLVNL-------------------------TGLCNLKCLELSDTQVGSSGLRH 319
           G  I D G+ N+                         +GL  L  L +S+++V +SGL H
Sbjct: 483 GGLITDAGVKNIKDLKALTLLNLSQNGNLTDKSLELISGLTALVSLNVSNSRVSNSGLHH 542

Query: 320 LSGLTNLESINLSFTGISDGSLRK--LAGLSSLKSL 353
           L  L NL S++L    ++   ++K  LA L +L S+
Sbjct: 543 LKPLQNLRSLSLESCKVTAIEIKKLQLAALPNLVSV 578



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 100/292 (34%), Positives = 146/292 (50%), Gaps = 28/292 (9%)

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ 239
           +L S+ ISCS VTD G+  LK    L  L+   C  ++   L +LS L ++  L+  +C 
Sbjct: 136 SLLSVDISCSDVTDGGLNQLKDCINLQSLSCNYCDQISEHGLKTLSGLSNVTSLSFKKCS 195

Query: 240 -LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT 297
            ++ +G + F+ + +L  L+L         LVHLKGL  LE LNL  C GI D       
Sbjct: 196 AVTAEGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEKLNLRYCNGITD------- 248

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
                            S ++HLS LTNL  + LS   ISD  +  L GLS L  LNL+ 
Sbjct: 249 -----------------SDMKHLSDLTNLRELQLSCCKISDLGVSYLRGLSKLAHLNLEG 291

Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
             +T   L  ++ L  L  L+L    + D G  +L     L+ L +    +TDA + H+K
Sbjct: 292 CAVTAACLEVISGLASLVLLNLSRCGVYDEGCEHLEGLVKLKVLNLGFNYITDACLVHLK 351

Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           +L +L  LNL  +C + D+ L  + GL  L SL +S++ + S GLRHL+  R
Sbjct: 352 ELINLECLNL-DSCKIGDEGLAHLKGLLKLRSLELSDTEVGSNGLRHLSGLR 402



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/184 (37%), Positives = 101/184 (54%), Gaps = 26/184 (14%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L S++LS ++V  +GL HL    NLQS++ +F + ++D GL+ + GL++L SL+   N  
Sbjct: 380 LRSLELSDTEVGSNGLRHLSGLRNLQSINLSFTL-VTDIGLKKISGLNSLRSLNLD-NRQ 437

Query: 119 ITAQGMKAFAGLINLVKLDL--ERCT----------------RIHGGLV------NLKGL 154
           IT  G+ A   L  L  LDL   R T                 + GGL+      N+K L
Sbjct: 438 ITDNGLAALTCLTGLTHLDLFGARITDAGTNCLKYFKNLQSLEVCGGLITDAGVKNIKDL 497

Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
             L  LN+     +TD  ++ +SGLT L SL +S S+V++SG+ +LK LQ L  L+LE C
Sbjct: 498 KALTLLNLSQNGNLTDKSLELISGLTALVSLNVSNSRVSNSGLHHLKPLQNLRSLSLESC 557

Query: 215 PVTA 218
            VTA
Sbjct: 558 KVTA 561


>gi|115459280|ref|NP_001053240.1| Os04g0503500 [Oryza sativa Japonica Group]
 gi|113564811|dbj|BAF15154.1| Os04g0503500 [Oryza sativa Japonica Group]
 gi|215678755|dbj|BAG95192.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215708842|dbj|BAG94111.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222629150|gb|EEE61282.1| hypothetical protein OsJ_15365 [Oryza sativa Japonica Group]
          Length = 581

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 323/465 (69%), Positives = 382/465 (82%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           +LPRD+SQQ+FNELV    LTE  L AFRDCALQD+CL  YPGV D WM+V ASQG SLL
Sbjct: 79  LLPRDLSQQVFNELVEWNILTEELLGAFRDCALQDICLADYPGVRDAWMEVAASQGQSLL 138

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVD+S SDVTD GL  LKDC NLQSL  N+C QIS+ GL+ L GLSN+TSLSF++ +A+T
Sbjct: 139 SVDISCSDVTDGGLNQLKDCINLQSLSCNYCDQISEHGLKTLSGLSNVTSLSFKKCSAVT 198

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           A+G KAFA ++NL  LDLERC +IHGGLV+LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEKLNLRYCNGITDSDMKHLSDLT 258

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NL+ LQ+SC K++D G++YL+GL KL  LNLEGC VTAACL+ +S L SL  LNL+RC +
Sbjct: 259 NLRELQLSCCKISDLGVSYLRGLSKLAHLNLEGCAVTAACLEVISGLASLVLLNLSRCGV 318

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
            D+GCE    +  LKVLNLGFN ITD CLVHLK L NLE LNLDSC IGDEGL +L GL 
Sbjct: 319 YDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKELINLECLNLDSCKIGDEGLAHLKGLL 378

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            L+ LELSDT+VGS+GLRHLSGL NL+SINLSFT ++D  L+K++GL+SL+SLNLD RQI
Sbjct: 379 KLRSLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLNSLRSLNLDNRQI 438

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLAALT LTGLTHLDLFGARITD+G   L+ FKNL+SLE+CGG +TDAGVK+IKDL 
Sbjct: 439 TDNGLAALTCLTGLTHLDLFGARITDAGTNCLKYFKNLQSLEVCGGLITDAGVKNIKDLK 498

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           +LTLLNLSQN NLTDK+LELIS LT LVSLNVSNSR++++GL HL
Sbjct: 499 ALTLLNLSQNGNLTDKSLELISRLTALVSLNVSNSRVSNSGLHHL 543



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 120/326 (36%), Positives = 175/326 (53%), Gaps = 3/326 (0%)

Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 204
           GGL  LK  + L+SL+  +C+ I++  +K LSGL+N+ SL    CS VT  G      + 
Sbjct: 150 GGLNQLKDCINLQSLSCNYCDQISEHGLKTLSGLSNVTSLSFKKCSAVTAEGAKAFANMV 209

Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNE 263
            L  L+LE CP     L  L  L  L  LNL  C  ++D   +  S + +L+ L L   +
Sbjct: 210 NLGSLDLERCPKIHGGLVHLKGLRKLEKLNLRYCNGITDSDMKHLSDLTNLRELQLSCCK 269

Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
           I+D  + +L+GL+ L  LNL+ C +    L  ++GL +L  L LS   V   G  HL GL
Sbjct: 270 ISDLGVSYLRGLSKLAHLNLEGCAVTAACLEVISGLASLVLLNLSRCGVYDEGCEHLEGL 329

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
             L+ +NL F  I+D  L  L  L +L+ LNLD+ +I D GLA L  L  L  L+L    
Sbjct: 330 VKLKVLNLGFNYITDACLVHLKELINLECLNLDSCKIGDEGLAHLKGLLKLRSLELSDTE 389

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
           +  +G  +L   +NL+S+ +    +TD G+K I  L+SL  LNL  N  +TD  L  ++ 
Sbjct: 390 VGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLNSLRSLNL-DNRQITDNGLAALTC 448

Query: 444 LTGLVSLNVSNSRITSAGLRHLNHAR 469
           LTGL  L++  +RIT AG   L + +
Sbjct: 449 LTGLTHLDLFGARITDAGTNCLKYFK 474



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 100/292 (34%), Positives = 146/292 (50%), Gaps = 28/292 (9%)

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ 239
           +L S+ ISCS VTD G+  LK    L  L+   C  ++   L +LS L ++  L+  +C 
Sbjct: 136 SLLSVDISCSDVTDGGLNQLKDCINLQSLSCNYCDQISEHGLKTLSGLSNVTSLSFKKCS 195

Query: 240 -LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT 297
            ++ +G + F+ + +L  L+L         LVHLKGL  LE LNL  C GI D       
Sbjct: 196 AVTAEGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEKLNLRYCNGITD------- 248

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
                            S ++HLS LTNL  + LS   ISD  +  L GLS L  LNL+ 
Sbjct: 249 -----------------SDMKHLSDLTNLRELQLSCCKISDLGVSYLRGLSKLAHLNLEG 291

Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
             +T   L  ++ L  L  L+L    + D G  +L     L+ L +    +TDA + H+K
Sbjct: 292 CAVTAACLEVISGLASLVLLNLSRCGVYDEGCEHLEGLVKLKVLNLGFNYITDACLVHLK 351

Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           +L +L  LNL  +C + D+ L  + GL  L SL +S++ + S GLRHL+  R
Sbjct: 352 ELINLECLNL-DSCKIGDEGLAHLKGLLKLRSLELSDTEVGSNGLRHLSGLR 402



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 125/221 (56%), Gaps = 4/221 (1%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           +TD+ L+HLK+  NL+ L+ + C +I D GL HL+GL  L SL    +  + + G++  +
Sbjct: 342 ITDACLVHLKELINLECLNLDSC-KIGDEGLAHLKGLLKLRSLELS-DTEVGSNGLRHLS 399

Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
           GL NL  ++L        GL  + GL  L SLN+     ITD+ +  L+ LT L  L + 
Sbjct: 400 GLRNLQSINLSFTLVTDIGLKKISGLNSLRSLNLDN-RQITDNGLAALTCLTGLTHLDLF 458

Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDDGCEK 247
            +++TD+G   LK  + L  L + G  +T A + ++  L +L  LNL++   L+D   E 
Sbjct: 459 GARITDAGTNCLKYFKNLQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGNLTDKSLEL 518

Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
            S++ +L  LN+  + +++  L HLK L NL SL+L+SC +
Sbjct: 519 ISRLTALVSLNVSNSRVSNSGLHHLKPLQNLRSLSLESCKV 559



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/184 (36%), Positives = 100/184 (54%), Gaps = 26/184 (14%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L S++LS ++V  +GL HL    NLQS++ +F + ++D GL+ + GL++L SL+   N  
Sbjct: 380 LRSLELSDTEVGSNGLRHLSGLRNLQSINLSFTL-VTDIGLKKISGLNSLRSLNLD-NRQ 437

Query: 119 ITAQGMKAFAGLINLVKLDL--ERCT----------------RIHGGLV------NLKGL 154
           IT  G+ A   L  L  LDL   R T                 + GGL+      N+K L
Sbjct: 438 ITDNGLAALTCLTGLTHLDLFGARITDAGTNCLKYFKNLQSLEVCGGLITDAGVKNIKDL 497

Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
             L  LN+     +TD  ++ +S LT L SL +S S+V++SG+ +LK LQ L  L+LE C
Sbjct: 498 KALTLLNLSQNGNLTDKSLELISRLTALVSLNVSNSRVSNSGLHHLKPLQNLRSLSLESC 557

Query: 215 PVTA 218
            VTA
Sbjct: 558 KVTA 561


>gi|115447277|ref|NP_001047418.1| Os02g0613200 [Oryza sativa Japonica Group]
 gi|47497632|dbj|BAD19701.1| leucine-rich repeat-like protein [Oryza sativa Japonica Group]
 gi|113536949|dbj|BAF09332.1| Os02g0613200 [Oryza sativa Japonica Group]
 gi|125582867|gb|EAZ23798.1| hypothetical protein OsJ_07510 [Oryza sativa Japonica Group]
 gi|215704406|dbj|BAG93840.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 582

 Score =  619 bits (1596), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 324/465 (69%), Positives = 386/465 (83%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           +LPRD+SQQIFNELV S  LTE  LE FRDCALQD+ LG+YPGVND WM+V+ASQ  SLL
Sbjct: 80  VLPRDLSQQIFNELVASNRLTETLLETFRDCALQDIDLGEYPGVNDAWMEVVASQRHSLL 139

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVD+S S++TDSGL  L+DC N+QSL  N+C  IS+ GL  L GLSNLTSLSF+ ++ IT
Sbjct: 140 SVDISCSEITDSGLYLLRDCPNMQSLACNYCDMISEHGLGILSGLSNLTSLSFKSSDGIT 199

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           A+ M+AFA L+NLV LDLERC +IHGGLV+LKGL  LESLN+++CN I DSD+K LS LT
Sbjct: 200 AEAMEAFANLVNLVNLDLERCLKIHGGLVHLKGLRNLESLNMRYCNNIADSDIKYLSDLT 259

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NLK LQ++C ++TD G++YL+GL KLT LNLEGCPVTAACL+++S L SL  LNL+RC +
Sbjct: 260 NLKELQLACCRITDLGVSYLRGLSKLTQLNLEGCPVTAACLEAISGLASLVVLNLSRCGI 319

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
             +GCE F  +  LKVLNLGFN ITD+CL HLK L NLESLNLDSC +GDEGL++L GL 
Sbjct: 320 YGEGCENFQGLKKLKVLNLGFNNITDDCLAHLKELINLESLNLDSCKVGDEGLLHLRGLM 379

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            LK LELSDT+VGSSGL+HLSGL NLESINLSFT ++D  ++K++ L+SLKS+NLD RQI
Sbjct: 380 LLKSLELSDTEVGSSGLQHLSGLRNLESINLSFTLVTDTGMKKISALNSLKSVNLDNRQI 439

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLAALTSLTGLTHLDLFGARITD G +  R FKNL SLE+CGG +TDAGVK+IKDL 
Sbjct: 440 TDVGLAALTSLTGLTHLDLFGARITDYGTSCFRFFKNLESLEVCGGLITDAGVKNIKDLK 499

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           +L  LNLSQN NLTDKTLELISGLT LVSLNVSN+R+++AGLRHL
Sbjct: 500 ALKQLNLSQNVNLTDKTLELISGLTALVSLNVSNTRVSNAGLRHL 544



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 116/330 (35%), Positives = 175/330 (53%), Gaps = 32/330 (9%)

Query: 68  DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           ++ DS + +L D +NL+ L    C +I+D G+ +LRGLS LT L+      +TA  ++A 
Sbjct: 246 NIADSDIKYLSDLTNLKELQL-ACCRITDLGVSYLRGLSKLTQLNLE-GCPVTAACLEAI 303

Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL----- 182
           +GL +LV L+L RC     G  N +GL KL+ LN+ + N ITD  +  L  L NL     
Sbjct: 304 SGLASLVVLNLSRCGIYGEGCENFQGLKKLKVLNLGFNN-ITDDCLAHLKELINLESLNL 362

Query: 183 -------------------KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
                              KSL++S ++V  SG+ +L GL+ L  +NL    VT   +  
Sbjct: 363 DSCKVGDEGLLHLRGLMLLKSLELSDTEVGSSGLQHLSGLRNLESINLSFTLVTDTGMKK 422

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           +SAL SL  +NL+  Q++D G    + +  L  L+L    ITD      +   NLESL +
Sbjct: 423 ISALNSLKSVNLDNRQITDVGLAALTSLTGLTHLDLFGARITDYGTSCFRFFKNLESLEV 482

Query: 284 DSCG--IGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
             CG  I D G+ N+  L  LK L LS +  +    L  +SGLT L S+N+S T +S+  
Sbjct: 483 --CGGLITDAGVKNIKDLKALKQLNLSQNVNLTDKTLELISGLTALVSLNVSNTRVSNAG 540

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTS 370
           LR L  L +L+SL+LD+ ++T + +  L +
Sbjct: 541 LRHLKDLQNLRSLSLDSCRVTTSEVKKLQA 570



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 102/190 (53%), Gaps = 26/190 (13%)

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           S++LS ++V  SGL HL    NL+S++ +F + ++D G++ +  L++L S++   N  IT
Sbjct: 383 SLELSDTEVGSSGLQHLSGLRNLESINLSFTL-VTDTGMKKISALNSLKSVNLD-NRQIT 440

Query: 121 AQGMKAFAGLINLVKLDL---------ERCTRIH---------GGLV------NLKGLMK 156
             G+ A   L  L  LDL           C R           GGL+      N+K L  
Sbjct: 441 DVGLAALTSLTGLTHLDLFGARITDYGTSCFRFFKNLESLEVCGGLITDAGVKNIKDLKA 500

Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
           L+ LN+     +TD  ++ +SGLT L SL +S ++V+++G+ +LK LQ L  L+L+ C V
Sbjct: 501 LKQLNLSQNVNLTDKTLELISGLTALVSLNVSNTRVSNAGLRHLKDLQNLRSLSLDSCRV 560

Query: 217 TAACLDSLSA 226
           T + +  L A
Sbjct: 561 TTSEVKKLQA 570


>gi|356548547|ref|XP_003542662.1| PREDICTED: F-box/LRR-repeat protein 14-like [Glycine max]
          Length = 578

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 324/465 (69%), Positives = 383/465 (82%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           +LPRDISQQIFNELV S CLTEVSLEAFRDCALQD+ LG+Y GVND WMDVI+SQG SLL
Sbjct: 76  ILPRDISQQIFNELVDSHCLTEVSLEAFRDCALQDIDLGEYVGVNDDWMDVISSQGLSLL 135

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVD++GS VTD GL  LKDCS+LQ+L  ++C Q S+ GL+H+ GLSNLTSLS R+++++ 
Sbjct: 136 SVDVAGSQVTDDGLRLLKDCSSLQALTLSYCDQFSEYGLKHISGLSNLTSLSIRKSSSVK 195

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
             GM+AF+ L NL KLDLERC+ IHGG V+LKGL KLE LNI  C C+TDSD+K +S L 
Sbjct: 196 PDGMRAFSNLFNLEKLDLERCSEIHGGFVHLKGLKKLEYLNIGCCKCVTDSDIKSISELI 255

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NLK LQIS S +TD GI YL+GL+KLT LN+EGC +TAACL+ + AL SL  LNLNRC L
Sbjct: 256 NLKELQISNSSITDIGITYLRGLEKLTTLNVEGCNITAACLEFIHALTSLACLNLNRCGL 315

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           SDDG EK S + +LK L+L FN ITD CLVHLK LTNLE LNLDSC IGD GL NLTGL 
Sbjct: 316 SDDGFEKISGLKNLKRLSLAFNRITDACLVHLKDLTNLEYLNLDSCRIGDGGLANLTGLT 375

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            LK L LSDT +G+SGLR++SGL  LE +N+SFT ++D  L++L+GL+ LKSLNLDARQI
Sbjct: 376 LLKSLVLSDTDIGNSGLRYISGLKKLEDLNVSFTTVTDNGLKRLSGLTQLKSLNLDARQI 435

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLA LTSL+GL  LDLFGARI+D+G  +LR+FKNL+SLEICGGGLTDAGVK+I+++ 
Sbjct: 436 TDAGLANLTSLSGLITLDLFGARISDNGTTFLRSFKNLQSLEICGGGLTDAGVKNIREIV 495

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           SLT LNLSQNCNLTDKTLELISG+T L SLNVSNSRIT+ GLRHL
Sbjct: 496 SLTQLNLSQNCNLTDKTLELISGMTALRSLNVSNSRITNEGLRHL 540



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/287 (32%), Positives = 160/287 (55%), Gaps = 4/287 (1%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L ++++ G ++T + L  +   ++L  L+ N C  +SD G E + GL NL  LS   N  
Sbjct: 281 LTTLNVEGCNITAACLEFIHALTSLACLNLNRC-GLSDDGFEKISGLKNLKRLSLAFNR- 338

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL  L+L+ C    GGL NL GL  L+SL +   + I +S ++ +SG
Sbjct: 339 ITDACLVHLKDLTNLEYLNLDSCRIGDGGLANLTGLTLLKSLVLSDTD-IGNSGLRYISG 397

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           L  L+ L +S + VTD+G+  L GL +L  LNL+   +T A L +L++L  L  L+L   
Sbjct: 398 LKKLEDLNVSFTTVTDNGLKRLSGLTQLKSLNLDARQITDAGLANLTSLSGLITLDLFGA 457

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL-DSCGIGDEGLVNLT 297
           ++SD+G        +L+ L +    +TD  + +++ + +L  LNL  +C + D+ L  ++
Sbjct: 458 RISDNGTTFLRSFKNLQSLEICGGGLTDAGVKNIREIVSLTQLNLSQNCNLTDKTLELIS 517

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
           G+  L+ L +S++++ + GLRHL  L NL ++ L    ++   ++KL
Sbjct: 518 GMTALRSLNVSNSRITNEGLRHLKPLKNLRTLTLESCKVTASGIKKL 564



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 87/242 (35%), Positives = 141/242 (58%), Gaps = 6/242 (2%)

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
           L+ + +TD+ L+HLKD +NL+ L+ + C +I DGGL +L GL+ L SL    +  I   G
Sbjct: 334 LAFNRITDACLVHLKDLTNLEYLNLDSC-RIGDGGLANLTGLTLLKSLVLS-DTDIGNSG 391

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
           ++  +GL  L  L++   T    GL  L GL +L+SLN+     ITD+ +  L+ L+ L 
Sbjct: 392 LRYISGLKKLEDLNVSFTTVTDNGLKRLSGLTQLKSLNLD-ARQITDAGLANLTSLSGLI 450

Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSD 242
           +L +  ++++D+G  +L+  + L  L + G  +T A + ++  + SL  LNL++ C L+D
Sbjct: 451 TLDLFGARISDNGTTFLRSFKNLQSLEICGGGLTDAGVKNIREIVSLTQLNLSQNCNLTD 510

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL--TGLC 300
              E  S + +L+ LN+  + IT+E L HLK L NL +L L+SC +   G+  L  T L 
Sbjct: 511 KTLELISGMTALRSLNVSNSRITNEGLRHLKPLKNLRTLTLESCKVTASGIKKLQSTDLP 570

Query: 301 NL 302
           NL
Sbjct: 571 NL 572



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 158/310 (50%), Gaps = 11/310 (3%)

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTA 218
           +N  W + I+   +       +L S+ ++ S+VTD G+  LK    L  L L  C   + 
Sbjct: 119 VNDDWMDVISSQGL-------SLLSVDVAGSQVTDDGLRLLKDCSSLQALTLSYCDQFSE 171

Query: 219 ACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
             L  +S L +L  L++ +   +  DG   FS + +L+ L+L          VHLKGL  
Sbjct: 172 YGLKHISGLSNLTSLSIRKSSSVKPDGMRAFSNLFNLEKLDLERCSEIHGGFVHLKGLKK 231

Query: 278 LESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
           LE LN+  C  + D  + +++ L NLK L++S++ +   G+ +L GL  L ++N+    I
Sbjct: 232 LEYLNIGCCKCVTDSDIKSISELINLKELQISNSSITDIGITYLRGLEKLTTLNVEGCNI 291

Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
           +   L  +  L+SL  LNL+   ++D G   ++ L  L  L L   RITD+   +L++  
Sbjct: 292 TAACLEFIHALTSLACLNLNRCGLSDDGFEKISGLKNLKRLSLAFNRITDACLVHLKDLT 351

Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
           NL  L +    + D G+ ++  L+ L  L LS + ++ +  L  ISGL  L  LNVS + 
Sbjct: 352 NLEYLNLDSCRIGDGGLANLTGLTLLKSLVLS-DTDIGNSGLRYISGLKKLEDLNVSFTT 410

Query: 457 ITSAGLRHLN 466
           +T  GL+ L+
Sbjct: 411 VTDNGLKRLS 420



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 93/166 (56%), Gaps = 4/166 (2%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           +++S + VTD+GL  L   + L+SL+ +   QI+D GL +L  LS L +L       I+ 
Sbjct: 404 LNVSFTTVTDNGLKRLSGLTQLKSLNLD-ARQITDAGLANLTSLSGLITLDLF-GARISD 461

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC-ITDSDMKPLSGLT 180
            G        NL  L++        G+ N++ ++ L  LN+   NC +TD  ++ +SG+T
Sbjct: 462 NGTTFLRSFKNLQSLEICGGGLTDAGVKNIREIVSLTQLNLSQ-NCNLTDKTLELISGMT 520

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
            L+SL +S S++T+ G+ +LK L+ L  L LE C VTA+ +  L +
Sbjct: 521 ALRSLNVSNSRITNEGLRHLKPLKNLRTLTLESCKVTASGIKKLQS 566


>gi|356562920|ref|XP_003549716.1| PREDICTED: F-box/LRR-repeat protein 14-like [Glycine max]
          Length = 580

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 324/465 (69%), Positives = 381/465 (81%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           +LPRDISQQIFNELV S CLT++SLEAFRDCALQD+ LG+Y GV+D WMDVI+SQG SLL
Sbjct: 78  ILPRDISQQIFNELVDSHCLTQLSLEAFRDCALQDIDLGEYVGVSDDWMDVISSQGLSLL 137

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVD+SGS VTD+GL  LKDCSNLQ+L  NFC Q S+ GL+H+ GLSNLTSLS R+++ + 
Sbjct: 138 SVDVSGSQVTDNGLRFLKDCSNLQALTLNFCDQFSEYGLKHISGLSNLTSLSIRKSSTVK 197

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
             GM+AF+ L NL KLDLERC+ IHGG V+LKGL KLE LNI  C C+ DSDMK +S L 
Sbjct: 198 PDGMRAFSNLFNLEKLDLERCSDIHGGFVHLKGLKKLEYLNIGCCKCVMDSDMKSISELI 257

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NLK LQIS S +TD GI YL+GL+ LT LN+EGC +TAACL+ + AL SL  LNLNRC L
Sbjct: 258 NLKELQISNSSITDIGITYLRGLKMLTTLNVEGCNITAACLEFIHALASLACLNLNRCGL 317

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           SDDG EK S + +LK L+L FN ITD CLVHLKGLTNLE LNLD C IGD+GL NLTGL 
Sbjct: 318 SDDGFEKISGLKNLKRLSLAFNRITDACLVHLKGLTNLEYLNLDYCRIGDDGLANLTGLT 377

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            LK L LSDT +G+SGLRH+SGL  LE +NLSFT ++D  L++L+GL+ LKSLNLDARQI
Sbjct: 378 LLKSLVLSDTDIGNSGLRHISGLKKLEDLNLSFTTVTDHGLKRLSGLTQLKSLNLDARQI 437

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLA LTSL+GL  LDLFGARI+D+G  +LR+FK L+SLEICGGGLTDAGVK+I+++ 
Sbjct: 438 TDAGLANLTSLSGLIALDLFGARISDNGTTFLRSFKILQSLEICGGGLTDAGVKNIREIV 497

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           SLT LNLSQNCNLTDKTLELISG+T L SLNVSNSRIT+ GLR+L
Sbjct: 498 SLTQLNLSQNCNLTDKTLELISGMTALRSLNVSNSRITNEGLRYL 542



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 158/287 (55%), Gaps = 4/287 (1%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L ++++ G ++T + L  +   ++L  L+ N C  +SD G E + GL NL  LS   N  
Sbjct: 283 LTTLNVEGCNITAACLEFIHALASLACLNLNRC-GLSDDGFEKISGLKNLKRLSLAFNR- 340

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +    GL NL  L+L+ C     GL NL GL  L+SL +   + I +S ++ +SG
Sbjct: 341 ITDACLVHLKGLTNLEYLNLDYCRIGDDGLANLTGLTLLKSLVLSDTD-IGNSGLRHISG 399

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           L  L+ L +S + VTD G+  L GL +L  LNL+   +T A L +L++L  L  L+L   
Sbjct: 400 LKKLEDLNLSFTTVTDHGLKRLSGLTQLKSLNLDARQITDAGLANLTSLSGLIALDLFGA 459

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL-DSCGIGDEGLVNLT 297
           ++SD+G         L+ L +    +TD  + +++ + +L  LNL  +C + D+ L  ++
Sbjct: 460 RISDNGTTFLRSFKILQSLEICGGGLTDAGVKNIREIVSLTQLNLSQNCNLTDKTLELIS 519

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
           G+  L+ L +S++++ + GLR+L  L NL ++ L    ++   ++KL
Sbjct: 520 GMTALRSLNVSNSRITNEGLRYLKPLKNLRTLTLESCKVTASEIKKL 566



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/247 (33%), Positives = 143/247 (57%), Gaps = 5/247 (2%)

Query: 43  GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
           G++D   + I+    +L  + L+ + +TD+ L+HLK  +NL+ L+ ++C +I D GL +L
Sbjct: 316 GLSDDGFEKISGL-KNLKRLSLAFNRITDACLVHLKGLTNLEYLNLDYC-RIGDDGLANL 373

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
            GL+ L SL    +  I   G++  +GL  L  L+L   T    GL  L GL +L+SLN+
Sbjct: 374 TGLTLLKSLVLS-DTDIGNSGLRHISGLKKLEDLNLSFTTVTDHGLKRLSGLTQLKSLNL 432

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
                ITD+ +  L+ L+ L +L +  ++++D+G  +L+  + L  L + G  +T A + 
Sbjct: 433 D-ARQITDAGLANLTSLSGLIALDLFGARISDNGTTFLRSFKILQSLEICGGGLTDAGVK 491

Query: 223 SLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
           ++  + SL  LNL++ C L+D   E  S + +L+ LN+  + IT+E L +LK L NL +L
Sbjct: 492 NIREIVSLTQLNLSQNCNLTDKTLELISGMTALRSLNVSNSRITNEGLRYLKPLKNLRTL 551

Query: 282 NLDSCGI 288
            L+SC +
Sbjct: 552 TLESCKV 558



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/288 (31%), Positives = 147/288 (51%), Gaps = 26/288 (9%)

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ 239
           +L S+ +S S+VTD+G+ +LK    L  L L  C   +   L  +S L +L  L++ +  
Sbjct: 135 SLLSVDVSGSQVTDNGLRFLKDCSNLQALTLNFCDQFSEYGLKHISGLSNLTSLSIRKSS 194

Query: 240 -LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
            +  DG   FS + +L+ L+L          VHLKGL  LE LN+  C            
Sbjct: 195 TVKPDGMRAFSNLFNLEKLDLERCSDIHGGFVHLKGLKKLEYLNIGCC------------ 242

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
               KC+  SD       ++ +S L NL+ + +S + I+D  +  L GL  L +LN++  
Sbjct: 243 ----KCVMDSD-------MKSISELINLKELQISNSSITDIGITYLRGLKMLTTLNVEGC 291

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
            IT   L  + +L  L  L+L    ++D G   +   KNL+ L +    +TDA + H+K 
Sbjct: 292 NITAACLEFIHALASLACLNLNRCGLSDDGFEKISGLKNLKRLSLAFNRITDACLVHLKG 351

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
           L++L  LNL   C + D  L  ++GLT L SL +S++ I ++GLRH++
Sbjct: 352 LTNLEYLNLDY-CRIGDDGLANLTGLTLLKSLVLSDTDIGNSGLRHIS 398



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 100/193 (51%), Gaps = 28/193 (14%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L S+ LS +D+ +SGL H+     L+ L+ +F   ++D GL+ L GL+ L SL+      
Sbjct: 379 LKSLVLSDTDIGNSGLRHISGLKKLEDLNLSF-TTVTDHGLKRLSGLTQLKSLNLDARQ- 436

Query: 119 ITAQGMKAFAGLINLVKLDLE------------RCTRI------------HGGLVNLKGL 154
           IT  G+     L  L+ LDL             R  +I              G+ N++ +
Sbjct: 437 ITDAGLANLTSLSGLIALDLFGARISDNGTTFLRSFKILQSLEICGGGLTDAGVKNIREI 496

Query: 155 MKLESLNIKWCNC-ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
           + L  LN+   NC +TD  ++ +SG+T L+SL +S S++T+ G+ YLK L+ L  L LE 
Sbjct: 497 VSLTQLNLSQ-NCNLTDKTLELISGMTALRSLNVSNSRITNEGLRYLKPLKNLRTLTLES 555

Query: 214 CPVTAACLDSLSA 226
           C VTA+ +  L +
Sbjct: 556 CKVTASEIKKLQS 568



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 78/156 (50%), Gaps = 7/156 (4%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           + L S++L    +TD+GL +L   S L +LD  F  +ISD G   LR    L SL     
Sbjct: 425 TQLKSLNLDARQITDAGLANLTSLSGLIALDL-FGARISDNGTTFLRSFKILQSLEIC-G 482

Query: 117 NAITAQGMKAFAGLINLVKLDL-ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
             +T  G+K    +++L +L+L + C      L  + G+  L SLN+     IT+  ++ 
Sbjct: 483 GGLTDAGVKNIREIVSLTQLNLSQNCNLTDKTLELISGMTALRSLNVSNSR-ITNEGLRY 541

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
           L  L NL++L +   KVT S I   K LQ   L NL
Sbjct: 542 LKPLKNLRTLTLESCKVTASEI---KKLQSTDLPNL 574


>gi|125540271|gb|EAY86666.1| hypothetical protein OsI_08050 [Oryza sativa Indica Group]
          Length = 582

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 324/465 (69%), Positives = 385/465 (82%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           +LPRD+SQQIFNELV S  LTE  LE F DCALQD+ LG+YPGVND WM+V+ASQ  SLL
Sbjct: 80  VLPRDLSQQIFNELVASNRLTETLLETFWDCALQDIDLGEYPGVNDAWMEVVASQRHSLL 139

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVD+S S++TDSGL  L+DC N+QSL  N+C  IS+ GL  L GLSNLTSLSF+ ++ IT
Sbjct: 140 SVDISCSEITDSGLYLLRDCPNMQSLACNYCDMISEHGLGILSGLSNLTSLSFKSSDGIT 199

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           A+ M+AFA L+NLV LDLERC +IHGGLV+LKGL  LESLN+++CN I DSD+K LS LT
Sbjct: 200 AEAMEAFANLVNLVNLDLERCLKIHGGLVHLKGLRNLESLNMRYCNNIADSDIKYLSDLT 259

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NLK LQ++C ++TD G++YL+GL KLT LNLEGCPVTAACL+++S L SL  LNL+RC +
Sbjct: 260 NLKELQLACCRITDLGVSYLRGLSKLTQLNLEGCPVTAACLEAISGLASLVVLNLSRCGI 319

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
             +GCE F  +  LKVLNLGFN ITD+CL HLK L NLESLNLDSC +GDEGL++L GL 
Sbjct: 320 YGEGCENFQGLKKLKVLNLGFNNITDDCLAHLKELINLESLNLDSCKVGDEGLLHLRGLM 379

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            LK LELSDT+VGSSGL+HLSGL NLESINLSFT ++D  ++K++ L+SLKS+NLD RQI
Sbjct: 380 LLKSLELSDTEVGSSGLQHLSGLRNLESINLSFTLVTDTGMKKISALNSLKSVNLDNRQI 439

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLAALTSLTGLTHLDLFGARITD G +  R FKNL SLE+CGG +TDAGVK+IKDL 
Sbjct: 440 TDVGLAALTSLTGLTHLDLFGARITDYGTSCFRFFKNLESLEVCGGLITDAGVKNIKDLK 499

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           +L  LNLSQN NLTDKTLELISGLT LVSLNVSN+RI++AGLRHL
Sbjct: 500 ALKQLNLSQNVNLTDKTLELISGLTALVSLNVSNTRISNAGLRHL 544



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 117/330 (35%), Positives = 175/330 (53%), Gaps = 32/330 (9%)

Query: 68  DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           ++ DS + +L D +NL+ L    C +I+D G+ +LRGLS LT L+      +TA  ++A 
Sbjct: 246 NIADSDIKYLSDLTNLKELQL-ACCRITDLGVSYLRGLSKLTQLNLE-GCPVTAACLEAI 303

Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL----- 182
           +GL +LV L+L RC     G  N +GL KL+ LN+ + N ITD  +  L  L NL     
Sbjct: 304 SGLASLVVLNLSRCGIYGEGCENFQGLKKLKVLNLGFNN-ITDDCLAHLKELINLESLNL 362

Query: 183 -------------------KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
                              KSL++S ++V  SG+ +L GL+ L  +NL    VT   +  
Sbjct: 363 DSCKVGDEGLLHLRGLMLLKSLELSDTEVGSSGLQHLSGLRNLESINLSFTLVTDTGMKK 422

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           +SAL SL  +NL+  Q++D G    + +  L  L+L    ITD      +   NLESL +
Sbjct: 423 ISALNSLKSVNLDNRQITDVGLAALTSLTGLTHLDLFGARITDYGTSCFRFFKNLESLEV 482

Query: 284 DSCG--IGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
             CG  I D G+ N+  L  LK L LS +  +    L  +SGLT L S+N+S T IS+  
Sbjct: 483 --CGGLITDAGVKNIKDLKALKQLNLSQNVNLTDKTLELISGLTALVSLNVSNTRISNAG 540

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTS 370
           LR L  L +L+SL+LD+ ++T + +  L +
Sbjct: 541 LRHLKDLQNLRSLSLDSCRVTTSEVKKLQA 570



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 102/190 (53%), Gaps = 26/190 (13%)

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           S++LS ++V  SGL HL    NL+S++ +F + ++D G++ +  L++L S++   N  IT
Sbjct: 383 SLELSDTEVGSSGLQHLSGLRNLESINLSFTL-VTDTGMKKISALNSLKSVNLD-NRQIT 440

Query: 121 AQGMKAFAGLINLVKLDL---------ERCTRIH---------GGLV------NLKGLMK 156
             G+ A   L  L  LDL           C R           GGL+      N+K L  
Sbjct: 441 DVGLAALTSLTGLTHLDLFGARITDYGTSCFRFFKNLESLEVCGGLITDAGVKNIKDLKA 500

Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
           L+ LN+     +TD  ++ +SGLT L SL +S ++++++G+ +LK LQ L  L+L+ C V
Sbjct: 501 LKQLNLSQNVNLTDKTLELISGLTALVSLNVSNTRISNAGLRHLKDLQNLRSLSLDSCRV 560

Query: 217 TAACLDSLSA 226
           T + +  L A
Sbjct: 561 TTSEVKKLQA 570


>gi|357478391|ref|XP_003609481.1| F-box/LRR-repeat protein [Medicago truncatula]
 gi|355510536|gb|AES91678.1| F-box/LRR-repeat protein [Medicago truncatula]
          Length = 576

 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 329/465 (70%), Positives = 384/465 (82%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           +LPRDISQ IFNELV S CLTE SL AFRDCALQD+ LG+Y GVND WMDVIASQG SLL
Sbjct: 74  ILPRDISQLIFNELVESHCLTETSLNAFRDCALQDVYLGEYLGVNDGWMDVIASQGPSLL 133

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           +VD+SGS+VTD GL  LKDC NLQ+L  N+C Q S+ GL+HL GLSNLTSLS R++ A+T
Sbjct: 134 AVDVSGSNVTDHGLRLLKDCLNLQALTLNYCDQFSEHGLKHLSGLSNLTSLSIRKSCAVT 193

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
             GM+AF+ L+NL KLDLERC+ IHGG V+ KGL KLESLNI  C C+TDSDMK +SG  
Sbjct: 194 PDGMRAFSNLVNLEKLDLERCSDIHGGFVHFKGLKKLESLNIGCCKCVTDSDMKAISGFI 253

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NLK LQIS S +TD GI+YL+GLQKL+ LN+EGC +TAAC + +SAL +L  LNLNRC L
Sbjct: 254 NLKELQISNSSITDLGISYLRGLQKLSTLNVEGCSITAACFEYISALAALACLNLNRCGL 313

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           SDDG EKFS +  LK L+L FN+ITD CLVHLKGLT LE LNLDSC IGDEGLVNLTGL 
Sbjct: 314 SDDGFEKFSGLTGLKRLSLAFNKITDACLVHLKGLTKLEYLNLDSCQIGDEGLVNLTGLT 373

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            LK L LSDT+VG+SG+R++SGL  LE +NLSFT ++D  L++L GL++LKSLNLDARQI
Sbjct: 374 LLKSLVLSDTEVGNSGIRYISGLNKLEDLNLSFTSVTDNGLKRLLGLTNLKSLNLDARQI 433

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLA LTSL+GL  LDLFGARITDSG  YLR+FKNL+SLEICGG LTDAGVK+I+++ 
Sbjct: 434 TDAGLANLTSLSGLITLDLFGARITDSGTTYLRSFKNLQSLEICGGLLTDAGVKNIREIV 493

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           SLT LNLSQNC LTDKTLELISG+T L SLNVSNSR+T+ GLR+L
Sbjct: 494 SLTQLNLSQNCKLTDKTLELISGMTALRSLNVSNSRVTNEGLRYL 538



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 107/337 (31%), Positives = 168/337 (49%), Gaps = 29/337 (8%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
           L+ L +G    V D  M  I S   +L  + +S S +TD G+ +L+    L +L+   C 
Sbjct: 230 LESLNIGCCKCVTDSDMKAI-SGFINLKELQISNSSITDLGISYLRGLQKLSTLNVEGC- 287

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
            I+    E++  L+ L  L+  R   ++  G + F+GL  L +L L         LV+LK
Sbjct: 288 SITAACFEYISALAALACLNLNRC-GLSDDGFEKFSGLTGLKRLSLAFNKITDACLVHLK 346

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
           GL KLE LN+  C  I D  +  L+GLT LKSL +S ++V +SGI Y+ GL KL  LNL 
Sbjct: 347 GLTKLEYLNLDSCQ-IGDEGLVNLTGLTLLKSLVLSDTEVGNSGIRYISGLNKLEDLNLS 405

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
              VT   L  L  L +L  LNL+  Q++D G    + +  L  L+L    ITD    +L
Sbjct: 406 FTSVTDNGLKRLLGLTNLKSLNLDARQITDAGLANLTSLSGLITLDLFGARITDSGTTYL 465

Query: 273 KGLTNLESLNL-------------------------DSCGIGDEGLVNLTGLCNLKCLEL 307
           +   NL+SL +                          +C + D+ L  ++G+  L+ L +
Sbjct: 466 RSFKNLQSLEICGGLLTDAGVKNIREIVSLTQLNLSQNCKLTDKTLELISGMTALRSLNV 525

Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
           S+++V + GLR+L  L NL +++L    ++   ++KL
Sbjct: 526 SNSRVTNEGLRYLKPLKNLRTLSLESCKVNAADIKKL 562



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 147/289 (50%), Gaps = 28/289 (9%)

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNR-C 238
           +L ++ +S S VTD G+  LK    L  L L  C   +   L  LS L +L  L++ + C
Sbjct: 131 SLLAVDVSGSNVTDHGLRLLKDCLNLQALTLNYCDQFSEHGLKHLSGLSNLTSLSIRKSC 190

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT 297
            ++ DG   FS + +L+ L+L          VH KGL  LESLN+  C  + D  +  ++
Sbjct: 191 AVTPDGMRAFSNLVNLEKLDLERCSDIHGGFVHFKGLKKLESLNIGCCKCVTDSDMKAIS 250

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
           G  NLK L++S++ +   G+ +L GL  L ++N+    I+      ++ L++L  LNL+ 
Sbjct: 251 GFINLKELQISNSSITDLGISYLRGLQKLSTLNVEGCSITAACFEYISALAALACLNLNR 310

Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
             ++D G    + LTGL  L L   +ITD                        A + H+K
Sbjct: 311 CGLSDDGFEKFSGLTGLKRLSLAFNKITD------------------------ACLVHLK 346

Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
            L+ L  LNL  +C + D+ L  ++GLT L SL +S++ + ++G+R+++
Sbjct: 347 GLTKLEYLNL-DSCQIGDEGLVNLTGLTLLKSLVLSDTEVGNSGIRYIS 394


>gi|356550632|ref|XP_003543689.1| PREDICTED: F-box/LRR-repeat protein 14-like [Glycine max]
          Length = 565

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 336/474 (70%), Positives = 383/474 (80%), Gaps = 10/474 (2%)

Query: 2   LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPG----------VNDKWMDV 51
           LP D+SQ+IFN +VYS  LT  SL+ FRD ALQD+CLG+Y            V+D WMDV
Sbjct: 54  LPPDLSQRIFNNMVYSSYLTPASLQPFRDSALQDICLGEYEYANGGGAAAAIVDDAWMDV 113

Query: 52  IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
           I+SQGSSLL +DLS SDVTD GL  L  C+N+ SL+ N C QISD GLE + GLSNL SL
Sbjct: 114 ISSQGSSLLHLDLSASDVTDHGLTFLGHCTNIISLNLNHCHQISDHGLECISGLSNLASL 173

Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
           SFRRN AI+AQG+  F+GLINLVKLDLERC  IHG LV+++GL  LESLN+ WCNC+ D 
Sbjct: 174 SFRRNYAISAQGLNTFSGLINLVKLDLERCPGIHGSLVHIQGLTMLESLNLNWCNCLVDV 233

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
           DMKPLS LTNLKSL+IS +KVTD GI++LKGLQKL LLNLEGC VT ACLDSL  L +L 
Sbjct: 234 DMKPLSVLTNLKSLEISFNKVTDFGISFLKGLQKLNLLNLEGCQVTTACLDSLEELPALS 293

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
            LNL+RC LS+DGCEKFS++ +LKVLNLGFN+ITD CL HLKGLT L+SLNLDSC I DE
Sbjct: 294 NLNLSRCNLSNDGCEKFSRLENLKVLNLGFNDITDACLAHLKGLTKLKSLNLDSCRIEDE 353

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
           GLV+L G   L CLELSDT +GS+GL HLSGL+NLE INLSFT ++D  L KL GLSSLK
Sbjct: 354 GLVHLAGHQQLNCLELSDTGIGSNGLHHLSGLSNLEKINLSFTFVNDSGLSKLCGLSSLK 413

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
           SLNLDARQ+TDTGLA+LTSLTGLT LDLFGARITD G  YL+ FKNLR LEICGG LTD 
Sbjct: 414 SLNLDARQVTDTGLASLTSLTGLTELDLFGARITDFGTNYLKCFKNLRLLEICGGELTDD 473

Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           GVK+IK+LSSL  LNLSQNCNLTD TLELISGLT L+SLNVSNS IT+AGL+HL
Sbjct: 474 GVKNIKELSSLKSLNLSQNCNLTDTTLELISGLTDLISLNVSNSGITNAGLQHL 527



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 91/182 (50%), Gaps = 28/182 (15%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           ++LS + +  +GL HL   SNL+ ++ +F   ++D GL  L GLS+L SL+      +T 
Sbjct: 367 LELSDTGIGSNGLHHLSGLSNLEKINLSFTF-VNDSGLSKLCGLSSLKSLNLDARQ-VTD 424

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI------------------- 162
            G+ +   L  L +LDL        G   LK    L  L I                   
Sbjct: 425 TGLASLTSLTGLTELDLFGARITDFGTNYLKCFKNLRLLEICGGELTDDGVKNIKELSSL 484

Query: 163 ------KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
                 + CN +TD+ ++ +SGLT+L SL +S S +T++G+ +LK L+ L  L+LE C V
Sbjct: 485 KSLNLSQNCN-LTDTTLELISGLTDLISLNVSNSGITNAGLQHLKTLKNLRSLSLESCKV 543

Query: 217 TA 218
           TA
Sbjct: 544 TA 545


>gi|357150116|ref|XP_003575347.1| PREDICTED: F-box/LRR-repeat protein 14-like [Brachypodium
           distachyon]
          Length = 582

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 320/466 (68%), Positives = 383/466 (82%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           +LP D+SQQ+FN+LV S CL E SLE FRDCAL D+CLG++PGV D WM+V+ASQ  SLL
Sbjct: 80  VLPSDLSQQVFNQLVDSNCLKEASLETFRDCALHDICLGEFPGVKDAWMEVVASQRQSLL 139

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVD+S S+VTDSGL  L+DCSN+QSL  N+C QIS+ GL  L G SNLTSLSF+R++ +T
Sbjct: 140 SVDISCSEVTDSGLNLLRDCSNMQSLVCNYCDQISEHGLGVLSGFSNLTSLSFKRSDGVT 199

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           A+GM+ FA L+NLV LDLERC +IHGGLV+LKGL KLES+N+++CN ITDSD+K LS LT
Sbjct: 200 AEGMRVFANLVNLVNLDLERCLKIHGGLVHLKGLRKLESINMRYCNNITDSDIKYLSDLT 259

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NLK LQ+S  ++TD G++YL+GL KL  LNLE CPVTAACL  +S L SL  LNLNRC +
Sbjct: 260 NLKELQLSSCRITDLGVSYLRGLSKLIRLNLESCPVTAACLVDISGLASLMLLNLNRCGI 319

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
            D+GCE F  +  LKVLNLGFN ITD CLVHLK L NLE LNLDSC +GD GL++L GL 
Sbjct: 320 YDEGCESFKDLKKLKVLNLGFNYITDACLVHLKELINLEFLNLDSCKVGDAGLLHLKGLV 379

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            LK LELSDT+VGS+GLRHLSGL  L+ I+LSFT ++D  ++K++ LSSLKS+NLD+R I
Sbjct: 380 LLKSLELSDTEVGSNGLRHLSGLRTLQRIDLSFTLVTDTGMKKISALSSLKSVNLDSRLI 439

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLAALT LTGLTHLDLFGARITD+GA+  R FKNL SLE CGG +TD GVK+IK+L 
Sbjct: 440 TDVGLAALTGLTGLTHLDLFGARITDNGASCFRYFKNLESLEACGGSITDVGVKNIKELK 499

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
           +LTLLNLSQN NLTDKTLELISGLT LVSLNVSNSR+++AGLRHLN
Sbjct: 500 ALTLLNLSQNANLTDKTLELISGLTALVSLNVSNSRVSNAGLRHLN 545



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 144/291 (49%), Gaps = 26/291 (8%)

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ 239
           +L S+ ISCS+VTDSG+  L+    +  L    C  ++   L  LS   +L  L+  R  
Sbjct: 137 SLLSVDISCSEVTDSGLNLLRDCSNMQSLVCNYCDQISEHGLGVLSGFSNLTSLSFKRSD 196

Query: 240 -LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
            ++ +G   F+ + +L  L+L         LVHLKGL  LES+N+  C            
Sbjct: 197 GVTAEGMRVFANLVNLVNLDLERCLKIHGGLVHLKGLRKLESINMRYCN----------- 245

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
                        +  S +++LS LTNL+ + LS   I+D  +  L GLS L  LNL++ 
Sbjct: 246 ------------NITDSDIKYLSDLTNLKELQLSSCRITDLGVSYLRGLSKLIRLNLESC 293

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
            +T   L  ++ L  L  L+L    I D G    ++ K L+ L +    +TDA + H+K+
Sbjct: 294 PVTAACLVDISGLASLMLLNLNRCGIYDEGCESFKDLKKLKVLNLGFNYITDACLVHLKE 353

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           L +L  LNL  +C + D  L  + GL  L SL +S++ + S GLRHL+  R
Sbjct: 354 LINLEFLNL-DSCKVGDAGLLHLKGLVLLKSLELSDTEVGSNGLRHLSGLR 403



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 96/190 (50%), Gaps = 26/190 (13%)

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           S++LS ++V  +GL HL     LQ +D +F + ++D G++ +  LS+L S++   +  IT
Sbjct: 383 SLELSDTEVGSNGLRHLSGLRTLQRIDLSFTL-VTDTGMKKISALSSLKSVNLD-SRLIT 440

Query: 121 AQGMKAFAGLINLVKLDL---------ERCTRIHG---------------GLVNLKGLMK 156
             G+ A  GL  L  LDL           C R                  G+ N+K L  
Sbjct: 441 DVGLAALTGLTGLTHLDLFGARITDNGASCFRYFKNLESLEACGGSITDVGVKNIKELKA 500

Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
           L  LN+     +TD  ++ +SGLT L SL +S S+V+++G+ +L  LQ L  L L+ C V
Sbjct: 501 LTLLNLSQNANLTDKTLELISGLTALVSLNVSNSRVSNAGLRHLNALQNLRSLTLDSCRV 560

Query: 217 TAACLDSLSA 226
           TA  +  L A
Sbjct: 561 TANEIRKLQA 570


>gi|242076388|ref|XP_002448130.1| hypothetical protein SORBIDRAFT_06g021780 [Sorghum bicolor]
 gi|241939313|gb|EES12458.1| hypothetical protein SORBIDRAFT_06g021780 [Sorghum bicolor]
          Length = 581

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 327/465 (70%), Positives = 385/465 (82%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           +LPRD+SQQIFNELV   CLTE SL AFRDCALQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79  LLPRDLSQQIFNELVECGCLTEASLGAFRDCALQDVCLGDYPGVTDAWMEVVASQGQSLL 138

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLS SDVTDSG   LKDCS++QSL  ++C +IS+ GL+ L G SNLTSLS ++  A+T
Sbjct: 139 SVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDKISEHGLKTLSGFSNLTSLSIKKCAAVT 198

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           A+G KAFA L+NLV LDLERC +IHGGL++LKGL KLE LN+++CNCITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKIHGGLIHLKGLKKLEKLNMRYCNCITDSDMKYLSDLT 258

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NL+ LQ+S  K++D G++YL+GL KL  LNLEGC VTAACL+ +S L SL  LNL+RC +
Sbjct: 259 NLRELQLSSCKISDFGVSYLRGLHKLGHLNLEGCSVTAACLEVISELASLVLLNLSRCGI 318

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
            D+GCE    +  LK LNLGFN IT  CL+HLK L +LE LNLDSC IGDEGL +L GL 
Sbjct: 319 CDEGCENLEGLTKLKALNLGFNHITGACLIHLKDLISLECLNLDSCKIGDEGLFHLKGLI 378

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            LK LELSDT+VGS+GLRHLSGL NL+SINLSFT ++D  L+K++GLSSLKSLNLD RQI
Sbjct: 379 QLKSLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLSSLKSLNLDNRQI 438

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TDTGLA+LT+LTGLTHLDLFGARITDSG    R FKNL+SLE+CGG +TDAGVK+IKDL 
Sbjct: 439 TDTGLASLTNLTGLTHLDLFGARITDSGMNCFRFFKNLQSLEVCGGLITDAGVKNIKDLK 498

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           +LTLLNLSQN NLTDKTLELISGLT LVSLNVSNSR++++GL HL
Sbjct: 499 ALTLLNLSQNGNLTDKTLELISGLTALVSLNVSNSRVSNSGLHHL 543



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 118/337 (35%), Positives = 160/337 (47%), Gaps = 25/337 (7%)

Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CS 190
           +L+ +DL        G   LK    ++SL   +C+ I++  +K LSG +NL SL I  C+
Sbjct: 136 SLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDKISEHGLKTLSGFSNLTSLSIKKCA 195

Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
            VT  G      L  L  L+LE CP     L  L  L  L  LN+  C            
Sbjct: 196 AVTAEGAKAFANLVNLVNLDLERCPKIHGGLIHLKGLKKLEKLNMRYC------------ 243

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
                      N ITD  + +L  LTNL  L L SC I D G+  L GL  L  L L   
Sbjct: 244 -----------NCITDSDMKYLSDLTNLRELQLSSCKISDFGVSYLRGLHKLGHLNLEGC 292

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
            V ++ L  +S L +L  +NLS  GI D     L GL+ LK+LNL    IT   L  L  
Sbjct: 293 SVTAACLEVISELASLVLLNLSRCGICDEGCENLEGLTKLKALNLGFNHITGACLIHLKD 352

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           L  L  L+L   +I D G  +L+    L+SLE+    +   G++H+  L +L  +NLS  
Sbjct: 353 LISLECLNLDSCKIGDEGLFHLKGLIQLKSLELSDTEVGSNGLRHLSGLRNLQSINLSFT 412

Query: 431 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNH 467
             +TD  L+ ISGL+ L SLN+ N +IT  GL  L +
Sbjct: 413 L-VTDIGLKKISGLSSLKSLNLDNRQITDTGLASLTN 448



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 106/325 (32%), Positives = 161/325 (49%), Gaps = 52/325 (16%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           +TDS + +L D +NL+ L  + C +ISD G+ +LRGL  L  L+     ++TA  ++  +
Sbjct: 246 ITDSDMKYLSDLTNLRELQLSSC-KISDFGVSYLRGLHKLGHLNLE-GCSVTAACLEVIS 303

Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
            L +LV L+L RC     G  NL+GL KL++LN+ + N IT + +  L  L +L+ L + 
Sbjct: 304 ELASLVLLNLSRCGICDEGCENLEGLTKLKALNLGF-NHITGACLIHLKDLISLECLNLD 362

Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
             K+ D G+ +LKGL +L  L L    V +  L  LS L +L  +NL+   ++D G +K 
Sbjct: 363 SCKIGDEGLFHLKGLIQLKSLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKI 422

Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL----------------------DSC 286
           S + SLK LNL   +ITD  L  L  LT L  L+L                      + C
Sbjct: 423 SGLSSLKSLNLDNRQITDTGLASLTNLTGLTHLDLFGARITDSGMNCFRFFKNLQSLEVC 482

Query: 287 G--IGDEGLVNL-------------------------TGLCNLKCLELSDTQVGSSGLRH 319
           G  I D G+ N+                         +GL  L  L +S+++V +SGL H
Sbjct: 483 GGLITDAGVKNIKDLKALTLLNLSQNGNLTDKTLELISGLTALVSLNVSNSRVSNSGLHH 542

Query: 320 LSGLTNLESINLSFTGISDGSLRKL 344
           L  L NL S++L    ++   + KL
Sbjct: 543 LKPLLNLRSLSLESCRVTASEIDKL 567



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 99/305 (32%), Positives = 152/305 (49%), Gaps = 27/305 (8%)

Query: 168 ITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS 225
           +TD+ M+ ++    +L S+ +SCS VTDSG   LK    +  L  + C  ++   L +LS
Sbjct: 122 VTDAWMEVVASQGQSLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDKISEHGLKTLS 181

Query: 226 ALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
              +L  L++ +C  ++ +G + F+ + +L  L+L         L+HLKGL  LE LN+ 
Sbjct: 182 GFSNLTSLSIKKCAAVTAEGAKAFANLVNLVNLDLERCPKIHGGLIHLKGLKKLEKLNMR 241

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
            C                 C+  SD       +++LS LTNL  + LS   ISD  +  L
Sbjct: 242 YC----------------NCITDSD-------MKYLSDLTNLRELQLSSCKISDFGVSYL 278

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
            GL  L  LNL+   +T   L  ++ L  L  L+L    I D G   L     L++L + 
Sbjct: 279 RGLHKLGHLNLEGCSVTAACLEVISELASLVLLNLSRCGICDEGCENLEGLTKLKALNLG 338

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
              +T A + H+KDL SL  LNL  +C + D+ L  + GL  L SL +S++ + S GLRH
Sbjct: 339 FNHITGACLIHLKDLISLECLNL-DSCKIGDEGLFHLKGLIQLKSLELSDTEVGSNGLRH 397

Query: 465 LNHAR 469
           L+  R
Sbjct: 398 LSGLR 402



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 70/190 (36%), Positives = 104/190 (54%), Gaps = 26/190 (13%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L S++LS ++V  +GL HL    NLQS++ +F + ++D GL+ + GLS+L SL+   N  
Sbjct: 380 LKSLELSDTEVGSNGLRHLSGLRNLQSINLSFTL-VTDIGLKKISGLSSLKSLNLD-NRQ 437

Query: 119 ITAQGMKAFAGLINLVKLDL---------ERCTR---------IHGGLV------NLKGL 154
           IT  G+ +   L  L  LDL           C R         + GGL+      N+K L
Sbjct: 438 ITDTGLASLTNLTGLTHLDLFGARITDSGMNCFRFFKNLQSLEVCGGLITDAGVKNIKDL 497

Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
             L  LN+     +TD  ++ +SGLT L SL +S S+V++SG+ +LK L  L  L+LE C
Sbjct: 498 KALTLLNLSQNGNLTDKTLELISGLTALVSLNVSNSRVSNSGLHHLKPLLNLRSLSLESC 557

Query: 215 PVTAACLDSL 224
            VTA+ +D L
Sbjct: 558 RVTASEIDKL 567


>gi|326497793|dbj|BAJ98524.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 583

 Score =  609 bits (1570), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 320/465 (68%), Positives = 381/465 (81%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLP DISQQIF+ELV S  LTE SLE FRDCAL D+CLG+YPGV D WM+V+ASQ  SLL
Sbjct: 81  MLPSDISQQIFDELVGSNRLTEESLETFRDCALHDICLGEYPGVTDAWMEVVASQRQSLL 140

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVD+S S+VTD GL  L DCS++QSL  N+C ++S+ G+  L G SNLTSLSF+R++ +T
Sbjct: 141 SVDISCSEVTDGGLNFLSDCSSMQSLSCNYCDRVSEHGIGVLSGFSNLTSLSFKRSDGVT 200

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           A+GM  FA L+NLV LDLE C +IHGGLV++KGL KLESLN+++CN ITDSD+K LS LT
Sbjct: 201 AEGMSVFADLVNLVNLDLECCLKIHGGLVHMKGLRKLESLNMRYCNYITDSDIKYLSDLT 260

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NLK LQ+S  ++TD G++YL GL KLT LNLE CPVTAACL+++S L SL  LNLNRC +
Sbjct: 261 NLKELQLSSCRITDLGVSYLTGLSKLTHLNLESCPVTAACLEAISGLASLMLLNLNRCGI 320

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
            D+GCE F  +  LKVLNLGFN ITD CLVHLKGL NLESLNLDSC IGDEGL++L GL 
Sbjct: 321 YDEGCESFEDLKKLKVLNLGFNHITDACLVHLKGLINLESLNLDSCKIGDEGLLHLKGLV 380

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            LK LELSDT +GS+GL+HLSGL NL SINLSFT ++D  ++K++ L+SLKS+NLD R I
Sbjct: 381 LLKSLELSDTAIGSNGLQHLSGLRNLHSINLSFTLVTDTGMKKISTLNSLKSVNLDNRLI 440

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLAAL  LTGLTHLDLFGAR+TD G ++LR FKNL SLE+CGG +TDAGVK+IKDL 
Sbjct: 441 TDVGLAALIGLTGLTHLDLFGARVTDHGTSFLRYFKNLESLEVCGGSITDAGVKNIKDLK 500

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           +LTLLNLSQN  LTDKTLELISGLT LVSLNVSNSR+++AG RHL
Sbjct: 501 ALTLLNLSQNAKLTDKTLELISGLTALVSLNVSNSRVSNAGFRHL 545



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 152/305 (49%), Gaps = 27/305 (8%)

Query: 168 ITDSDMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLS 225
           +TD+ M+ + S   +L S+ ISCS+VTD G+ +L     +  L+   C  V+   +  LS
Sbjct: 124 VTDAWMEVVASQRQSLLSVDISCSEVTDGGLNFLSDCSSMQSLSCNYCDRVSEHGIGVLS 183

Query: 226 ALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
              +L  L+  R   ++ +G   F+ + +L  L+L         LVH+KGL  LESLN+ 
Sbjct: 184 GFSNLTSLSFKRSDGVTAEGMSVFADLVNLVNLDLECCLKIHGGLVHMKGLRKLESLNMR 243

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
            C                         +  S +++LS LTNL+ + LS   I+D  +  L
Sbjct: 244 YCNY-----------------------ITDSDIKYLSDLTNLKELQLSSCRITDLGVSYL 280

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
            GLS L  LNL++  +T   L A++ L  L  L+L    I D G     + K L+ L + 
Sbjct: 281 TGLSKLTHLNLESCPVTAACLEAISGLASLMLLNLNRCGIYDEGCESFEDLKKLKVLNLG 340

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
              +TDA + H+K L +L  LNL  +C + D+ L  + GL  L SL +S++ I S GL+H
Sbjct: 341 FNHITDACLVHLKGLINLESLNL-DSCKIGDEGLLHLKGLVLLKSLELSDTAIGSNGLQH 399

Query: 465 LNHAR 469
           L+  R
Sbjct: 400 LSGLR 404



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 28/191 (14%)

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           S++LS + +  +GL HL    NL S++ +F + ++D G++ +  L++L S++   N  IT
Sbjct: 384 SLELSDTAIGSNGLQHLSGLRNLHSINLSFTL-VTDTGMKKISTLNSLKSVNLD-NRLIT 441

Query: 121 AQGMKAFAGLINLVKLDL--ERCTRIHG-----------------------GLVNLKGLM 155
             G+ A  GL  L  LDL   R T  HG                       G+ N+K L 
Sbjct: 442 DVGLAALIGLTGLTHLDLFGARVTD-HGTSFLRYFKNLESLEVCGGSITDAGVKNIKDLK 500

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
            L  LN+     +TD  ++ +SGLT L SL +S S+V+++G  +LK LQ L  L L+ C 
Sbjct: 501 ALTLLNLSQNAKLTDKTLELISGLTALVSLNVSNSRVSNAGFRHLKALQNLRSLTLDSCR 560

Query: 216 VTAACLDSLSA 226
           VT   +  L A
Sbjct: 561 VTVNEMKKLRA 571



 Score = 46.2 bits (108), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 8/169 (4%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
           V D  M  I++  +SL SV+L    +TD GL  L   + L  LD  F  +++D G   LR
Sbjct: 416 VTDTGMKKISTL-NSLKSVNLDNRLITDVGLAALIGLTGLTHLDL-FGARVTDHGTSFLR 473

Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNI 162
              NL SL      +IT  G+K    L  L  L+L +  ++    + L  GL  L SLN+
Sbjct: 474 YFKNLESLEVC-GGSITDAGVKNIKDLKALTLLNLSQNAKLTDKTLELISGLTALVSLNV 532

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
                ++++  + L  L NL+SL +   +VT   +  +K L+   L NL
Sbjct: 533 SNSR-VSNAGFRHLKALQNLRSLTLDSCRVT---VNEMKKLRATALPNL 577


>gi|226501144|ref|NP_001141453.1| uncharacterized protein LOC100273563 [Zea mays]
 gi|194704638|gb|ACF86403.1| unknown [Zea mays]
 gi|414586493|tpg|DAA37064.1| TPA: regulatory subunit [Zea mays]
          Length = 581

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 322/465 (69%), Positives = 382/465 (82%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           +LPRD+SQQIFNELV   CLTE SL AFRDC LQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79  LLPRDLSQQIFNELVECGCLTEASLGAFRDCDLQDICLGDYPGVTDAWMEVVASQGQSLL 138

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLS SDVTDSG   LKDCS++QSL  ++C QIS+ GL+ L G SNLTSLS ++  A+T
Sbjct: 139 SVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVT 198

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           A+G KAFA L+NLV LDLERC +I+GGL++LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLT 258

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NL+ LQ+S  K++  G++YL+GL KL  LNLEGC VTA CL+ +S L SL  LNL+RC +
Sbjct: 259 NLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGI 318

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
            D+GCE    +  LK L+LGFN+ITD CL+HLK L NLE LNLDSC IGDEGL +L GL 
Sbjct: 319 CDEGCENLKGLTKLKALSLGFNQITDACLIHLKDLVNLECLNLDSCKIGDEGLFHLKGLI 378

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            LK LELSDT+VGS+GLRHLSGL NL+SINLSFT ++D  L+K++GLSSLKSLNLD RQI
Sbjct: 379 QLKNLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLSSLKSLNLDNRQI 438

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TDTGLA+LT LTGLTHLDLFGARITDSG +  R FKN++SLE+CGG +TDAGVK+IKDL 
Sbjct: 439 TDTGLASLTGLTGLTHLDLFGARITDSGMSCFRFFKNIQSLEVCGGLITDAGVKNIKDLK 498

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           +LTLLNLSQN  LTDKTLELISGLT LVSLNVSNSR++++GL HL
Sbjct: 499 ALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSNSGLHHL 543



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 109/325 (33%), Positives = 162/325 (49%), Gaps = 52/325 (16%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           +TDS + +L D +NL+ L  + C +IS  G+ +LRGL  L  L+     A+TA  ++  +
Sbjct: 246 ITDSDMKYLSDLTNLRELQLSSC-KISAFGVSYLRGLHKLGHLNLE-GCAVTAVCLEVIS 303

Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
            L +LV L+L RC     G  NLKGL KL++L++ + N ITD+ +  L  L NL+ L + 
Sbjct: 304 ELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGF-NQITDACLIHLKDLVNLECLNLD 362

Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
             K+ D G+ +LKGL +L  L L    V +  L  LS L +L  +NL+   ++D G +K 
Sbjct: 363 SCKIGDEGLFHLKGLIQLKNLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKI 422

Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL----------------------DSC 286
           S + SLK LNL   +ITD  L  L GLT L  L+L                      + C
Sbjct: 423 SGLSSLKSLNLDNRQITDTGLASLTGLTGLTHLDLFGARITDSGMSCFRFFKNIQSLEVC 482

Query: 287 G--IGDEGLVNL-------------------------TGLCNLKCLELSDTQVGSSGLRH 319
           G  I D G+ N+                         +GL  L  L +S+++V +SGL H
Sbjct: 483 GGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSNSGLHH 542

Query: 320 LSGLTNLESINLSFTGISDGSLRKL 344
           L  L NL S++L    ++   + KL
Sbjct: 543 LKPLQNLRSLSLESCRVTASEMDKL 567



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 106/336 (31%), Positives = 147/336 (43%), Gaps = 49/336 (14%)

Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CS 190
           +L+ +DL        G   LK    ++SL   +C+ I++  +K LSG +NL SL I  C+
Sbjct: 136 SLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCA 195

Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
            VT  G      L  L  L+LE CP     L  L  L  L  LNL  C            
Sbjct: 196 AVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYC------------ 243

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
                      N ITD  + +L  LTNL  L L SC I   G+  L GL  L  L L   
Sbjct: 244 -----------NGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGC 292

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
            V +  L  +S L +L  +NLS  GI D     L GL+ LK+L+L   QITD  L  L  
Sbjct: 293 AVTAVCLEVISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGFNQITDACLIHLKD 352

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           L  L  L+L   +I D G  +L+    L++LE+    +   G++H+              
Sbjct: 353 LVNLECLNLDSCKIGDEGLFHLKGLIQLKNLELSDTEVGSNGLRHL-------------- 398

Query: 431 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
                      SGL  L S+N+S + +T  GL+ ++
Sbjct: 399 -----------SGLRNLQSINLSFTLVTDIGLKKIS 423



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 153/306 (50%), Gaps = 29/306 (9%)

Query: 168 ITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS 225
           +TD+ M+ ++    +L S+ +SCS VTDSG   LK    +  L  + C  ++   L +LS
Sbjct: 122 VTDAWMEVVASQGQSLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLS 181

Query: 226 ALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
              +L  L++ +C  ++ +G + F+                         L NL +L+L+
Sbjct: 182 GFSNLTSLSIKKCAAVTAEGAKAFAN------------------------LVNLVNLDLE 217

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
            C   + GL++L GL  L+ L L     +  S +++LS LTNL  + LS   IS   +  
Sbjct: 218 RCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLTNLRELQLSSCKISAFGVSY 277

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           L GL  L  LNL+   +T   L  ++ L  L  L+L    I D G   L+    L++L +
Sbjct: 278 LRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGICDEGCENLKGLTKLKALSL 337

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
               +TDA + H+KDL +L  LNL  +C + D+ L  + GL  L +L +S++ + S GLR
Sbjct: 338 GFNQITDACLIHLKDLVNLECLNL-DSCKIGDEGLFHLKGLIQLKNLELSDTEVGSNGLR 396

Query: 464 HLNHAR 469
           HL+  R
Sbjct: 397 HLSGLR 402



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/190 (37%), Positives = 105/190 (55%), Gaps = 26/190 (13%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L +++LS ++V  +GL HL    NLQS++ +F + ++D GL+ + GLS+L SL+   N  
Sbjct: 380 LKNLELSDTEVGSNGLRHLSGLRNLQSINLSFTL-VTDIGLKKISGLSSLKSLNLD-NRQ 437

Query: 119 ITAQGMKAFAGLINLVKLDL---------ERCTRIH---------GGLV------NLKGL 154
           IT  G+ +  GL  L  LDL           C R           GGL+      N+K L
Sbjct: 438 ITDTGLASLTGLTGLTHLDLFGARITDSGMSCFRFFKNIQSLEVCGGLITDAGVKNIKDL 497

Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
             L  LN+     +TD  ++ +SGLT L SL +S S+V++SG+ +LK LQ L  L+LE C
Sbjct: 498 KALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSNSGLHHLKPLQNLRSLSLESC 557

Query: 215 PVTAACLDSL 224
            VTA+ +D L
Sbjct: 558 RVTASEMDKL 567


>gi|195647464|gb|ACG43200.1| regulatory subunit [Zea mays]
          Length = 581

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 320/465 (68%), Positives = 380/465 (81%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           +LPRD+SQQIFNELV   CLTE SL AFRDC LQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79  LLPRDLSQQIFNELVECGCLTEASLGAFRDCDLQDICLGDYPGVTDAWMEVVASQGQSLL 138

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLS SDV DSG   LKDCS++Q+L  ++C QIS+ GL+ L G SNLTSLS ++  A+T
Sbjct: 139 SVDLSCSDVIDSGFNLLKDCSSMQNLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVT 198

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           A+G KAFA L+NLV LDLERC +I+GGL++LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLT 258

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NL+ LQ+S  K++  G++YL+GL KL  LNLEGC VTA CL+ +S L SL  LNL+RC +
Sbjct: 259 NLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGI 318

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
            D+GCE    +  LK L+LGFN+ITD CL+HLK L NLE LNLDSC IGDEGL +L GL 
Sbjct: 319 CDEGCENLKGLTKLKALSLGFNQITDACLIHLKDLVNLECLNLDSCKIGDEGLFHLKGLI 378

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            LK LELSDT+VGS+GLRHLSGL NL+SINLSFT ++D  L+K++GLSSLKSLNLD RQI
Sbjct: 379 QLKNLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLSSLKSLNLDNRQI 438

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TDTGLA+LT LTGLTHLDLFGARITDSG +  R FKN++SLE+CGG +TDAGVK+IKDL 
Sbjct: 439 TDTGLASLTGLTGLTHLDLFGARITDSGMSCFRFFKNIQSLEVCGGLITDAGVKNIKDLK 498

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           +LTLLNLSQN  LTDKTLELISGLT LVSLNVSNSR+++ GL HL
Sbjct: 499 ALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSNLGLHHL 543



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 108/325 (33%), Positives = 161/325 (49%), Gaps = 52/325 (16%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           +TDS + +L D +NL+ L  + C +IS  G+ +LRGL  L  L+     A+TA  ++  +
Sbjct: 246 ITDSDMKYLSDLTNLRELQLSSC-KISAFGVSYLRGLHKLGHLNLE-GCAVTAVCLEVIS 303

Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
            L +LV L+L RC     G  NLKGL KL++L++ + N ITD+ +  L  L NL+ L + 
Sbjct: 304 ELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGF-NQITDACLIHLKDLVNLECLNLD 362

Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
             K+ D G+ +LKGL +L  L L    V +  L  LS L +L  +NL+   ++D G +K 
Sbjct: 363 SCKIGDEGLFHLKGLIQLKNLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKI 422

Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL----------------------DSC 286
           S + SLK LNL   +ITD  L  L GLT L  L+L                      + C
Sbjct: 423 SGLSSLKSLNLDNRQITDTGLASLTGLTGLTHLDLFGARITDSGMSCFRFFKNIQSLEVC 482

Query: 287 G--IGDEGLVNL-------------------------TGLCNLKCLELSDTQVGSSGLRH 319
           G  I D G+ N+                         +GL  L  L +S+++V + GL H
Sbjct: 483 GGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSNLGLHH 542

Query: 320 LSGLTNLESINLSFTGISDGSLRKL 344
           L  L NL S++L    ++   + KL
Sbjct: 543 LKPLQNLRSLSLESCRVTASEMDKL 567



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/281 (33%), Positives = 154/281 (54%), Gaps = 6/281 (2%)

Query: 52  IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
           + S+ +SL+ ++LS   + D G  +LK  + L++L   F  QI+D  L HL+ L NL  L
Sbjct: 301 VISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGF-NQITDACLIHLKDLVNLECL 359

Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
           +   +  I  +G+    GLI L  L+L        GL +L GL  L+S+N+ +   +TD 
Sbjct: 360 NLD-SCKIGDEGLFHLKGLIQLKNLELSDTEVGSNGLRHLSGLRNLQSINLSF-TLVTDI 417

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
            +K +SGL++LKSL +   ++TD+G+A L GL  LT L+L G  +T + +       ++ 
Sbjct: 418 GLKKISGLSSLKSLNLDNRQITDTGLASLTGLTGLTHLDLFGARITDSGMSCFRFFKNIQ 477

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSCGIGD 290
            L +    ++D G +    + +L +LNL  N ++TD+ L  + GLT L SLN+ +  + +
Sbjct: 478 SLEVCGGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSN 537

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLS--GLTNLESI 329
            GL +L  L NL+ L L   +V +S +  L    L NL S+
Sbjct: 538 LGLHHLKPLQNLRSLSLESCRVTASEMDKLRLVALPNLISV 578



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 106/336 (31%), Positives = 148/336 (44%), Gaps = 49/336 (14%)

Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CS 190
           +L+ +DL     I  G   LK    +++L   +C+ I++  +K LSG +NL SL I  C+
Sbjct: 136 SLLSVDLSCSDVIDSGFNLLKDCSSMQNLACDYCDQISEHGLKTLSGFSNLTSLSIKKCA 195

Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
            VT  G      L  L  L+LE CP     L  L  L  L  LNL  C            
Sbjct: 196 AVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYC------------ 243

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
                      N ITD  + +L  LTNL  L L SC I   G+  L GL  L  L L   
Sbjct: 244 -----------NGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGC 292

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
            V +  L  +S L +L  +NLS  GI D     L GL+ LK+L+L   QITD  L  L  
Sbjct: 293 AVTAVCLEVISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGFNQITDACLIHLKD 352

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           L  L  L+L   +I D G  +L+    L++LE+    +   G++H+              
Sbjct: 353 LVNLECLNLDSCKIGDEGLFHLKGLIQLKNLELSDTEVGSNGLRHL-------------- 398

Query: 431 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
                      SGL  L S+N+S + +T  GL+ ++
Sbjct: 399 -----------SGLRNLQSINLSFTLVTDIGLKKIS 423



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 152/306 (49%), Gaps = 29/306 (9%)

Query: 168 ITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS 225
           +TD+ M+ ++    +L S+ +SCS V DSG   LK    +  L  + C  ++   L +LS
Sbjct: 122 VTDAWMEVVASQGQSLLSVDLSCSDVIDSGFNLLKDCSSMQNLACDYCDQISEHGLKTLS 181

Query: 226 ALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
              +L  L++ +C  ++ +G + F+                         L NL +L+L+
Sbjct: 182 GFSNLTSLSIKKCAAVTAEGAKAFAN------------------------LVNLVNLDLE 217

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
            C   + GL++L GL  L+ L L     +  S +++LS LTNL  + LS   IS   +  
Sbjct: 218 RCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLTNLRELQLSSCKISAFGVSY 277

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           L GL  L  LNL+   +T   L  ++ L  L  L+L    I D G   L+    L++L +
Sbjct: 278 LRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGICDEGCENLKGLTKLKALSL 337

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
               +TDA + H+KDL +L  LNL  +C + D+ L  + GL  L +L +S++ + S GLR
Sbjct: 338 GFNQITDACLIHLKDLVNLECLNL-DSCKIGDEGLFHLKGLIQLKNLELSDTEVGSNGLR 396

Query: 464 HLNHAR 469
           HL+  R
Sbjct: 397 HLSGLR 402


>gi|8927653|gb|AAF82144.1|AC034256_8 Contains similarity to F-box protein FBL2 from Homo sapiens
           gb|AF176518 and contains multiple Leucine Rich PF|00560
           repeats. ESTs gb|Z34572, gb|Z34571, gb|AI100681,
           gb|AI100675, gb|AA395320, gb|AI100674, gb|AA651378,
           gb|AA007067, gb|T46145, gb|T22090, gb|AI995016,
           gb|H36884, gb|AI995066, gb|H37061, gb|T43537 come from
           this gene [Arabidopsis thaliana]
          Length = 568

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 341/472 (72%), Positives = 387/472 (81%), Gaps = 32/472 (6%)

Query: 2   LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
           LPRDISQQIF+ELVYS+ LT  SLEAFRDCA+QDL LG+YPGVND WMDVI+SQ +SLLS
Sbjct: 83  LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLYLGEYPGVNDDWMDVISSQSTSLLS 142

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           VD SGSD+TDSGL+ LK C+NL+SL+FNFC QIS+ GL HL GLSNLTSLSFRRN AITA
Sbjct: 143 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSFRRNAAITA 202

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
           QGM+A + L+NL KLDLE+C  I GGLV+L+ L KLESLNIKWCNCITD+DM+P      
Sbjct: 203 QGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADMEP------ 256

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLS-------ALGSLFYL 233
                             L GL KL LLNLEGC  VTAACLD+L+       AL  L YL
Sbjct: 257 ------------------LSGLNKLNLLNLEGCRHVTAACLDTLTGLYRHPHALAGLMYL 298

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           NLNRC  SD GCEKFS + +LK+LNLG N IT+ CLVHLKGLT LESLNLDSC IGDEGL
Sbjct: 299 NLNRCNFSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEGL 358

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
           V+L+G+  LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D  LRKL+GL+SL++L
Sbjct: 359 VHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTL 418

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
           NLDAR +TD GL+ALTSLTGLTHLDLFGARITDSG  +LRN K L+SLEICGGGLTD GV
Sbjct: 419 NLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGV 478

Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           K+IKDLSSLTLLNLSQN NLTDKTLELISGLTGLVSLNVSNSR++S+GLRHL
Sbjct: 479 KNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHL 530



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 120/333 (36%), Positives = 162/333 (48%), Gaps = 35/333 (10%)

Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQK 205
           GLV+LKG   LESLN  +C+ I++  +  LSGL+NL SL     + +T  G+  L  L  
Sbjct: 154 GLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSFRRNAAITAQGMRALSNLVN 213

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNE 263
           L  L+LE CP     L  L AL  L  LN+  C  ++D   E  S +  L +LNL G   
Sbjct: 214 LKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADMEPLSGLNKLNLLNLEGCRH 273

Query: 264 ITDECL-------VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
           +T  CL        H   L  L  LNL+ C   D G    + L NLK L L    + +S 
Sbjct: 274 VTAACLDTLTGLYRHPHALAGLMYLNLNRCNFSDSGCEKFSDLINLKILNLGMNNITNSC 333

Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
           L HL GLT LES+NL    I D  L  L+G+  LKSL L   ++   GL  L+ L+ L  
Sbjct: 334 LVHLKGLTKLESLNLDSCRIGDEGLVHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLES 393

Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
           ++L    +TDSG   L    +LR+L +    +TDAG      LS+LT             
Sbjct: 394 INLSFTVVTDSGLRKLSGLTSLRTLNLDARHVTDAG------LSALT------------- 434

Query: 437 TLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
                  LTGL  L++  +RIT +G  HL + +
Sbjct: 435 ------SLTGLTHLDLFGARITDSGTNHLRNLK 461



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 101/192 (52%), Gaps = 26/192 (13%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L S++LS ++V  +GL HL   SNL+S++ +F + ++D GL  L GL++L +L+    + 
Sbjct: 367 LKSLELSDTEVGSNGLRHLSGLSNLESINLSFTV-VTDSGLRKLSGLTSLRTLNLDARH- 424

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL-------------NIK-- 163
           +T  G+ A   L  L  LDL        G  +L+ L KL+SL             NIK  
Sbjct: 425 VTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDL 484

Query: 164 ---------WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
                      + +TD  ++ +SGLT L SL +S S+V+ SG+ +LK L+ L  L LE C
Sbjct: 485 SSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTLESC 544

Query: 215 PVTAACLDSLSA 226
            ++A  +  L A
Sbjct: 545 KLSANDIRKLQA 556


>gi|226505324|ref|NP_001147302.1| regulatory subunit [Zea mays]
 gi|195609698|gb|ACG26679.1| regulatory subunit [Zea mays]
 gi|413937767|gb|AFW72318.1| regulatory subunit isoform 1 [Zea mays]
 gi|413937768|gb|AFW72319.1| regulatory subunit isoform 2 [Zea mays]
          Length = 582

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 321/466 (68%), Positives = 390/466 (83%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRD+SQQIFNELV S  LTE SL+ FRDCALQD+ LG+YPGV D WM+V+ASQ  SLL
Sbjct: 80  MLPRDLSQQIFNELVNSNRLTEASLQVFRDCALQDIGLGEYPGVKDAWMEVVASQKQSLL 139

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVD+S S+V DSG+  L+DCS++QSL  N+C QIS+ GL  L GLSNL+SLSF+R+NA+T
Sbjct: 140 SVDISCSEVADSGIDLLRDCSSMQSLACNYCDQISESGLGVLSGLSNLSSLSFKRSNAVT 199

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           A+GM+AFA L+NL+ LDLE C +IHGGL++LK L KLESLN+++CN I DSD+K L+ LT
Sbjct: 200 AEGMRAFANLVNLLNLDLEGCLKIHGGLIHLKDLTKLESLNMRYCNYIADSDIKYLTDLT 259

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NLK LQ+SC K+TD G++Y++GLQKLT LNLEGCPVTAACL+++S L SL  LNLNRC +
Sbjct: 260 NLKDLQLSCCKITDLGVSYIRGLQKLTHLNLEGCPVTAACLEAISGLSSLVLLNLNRCGI 319

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
            DDGCE F  +  LKVLNLGFN ITD CLVHLK L +LESLNLDSC IGD+GL +L GL 
Sbjct: 320 YDDGCENFEGLKRLKVLNLGFNYITDACLVHLKELISLESLNLDSCKIGDDGLSHLKGLV 379

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            L+ LELSDT+VG++GL+HLSGL NL+SINLSFT ++D  ++K++ L+SLKS+NLD RQI
Sbjct: 380 LLQSLELSDTEVGNNGLQHLSGLRNLQSINLSFTLVTDIGVKKISVLNSLKSVNLDNRQI 439

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLAAL SLT LTHLDLFGA ITD+G    R FKNL SLE+CGG +TDAGVK+IKDL 
Sbjct: 440 TDVGLAALISLTRLTHLDLFGACITDNGTNCFRYFKNLVSLEVCGGFVTDAGVKNIKDLK 499

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
           +LTLLNLSQN NLTDKTLELISGLT L++LNVSNSR+++AGL+HLN
Sbjct: 500 ALTLLNLSQNANLTDKTLELISGLTALINLNVSNSRVSNAGLKHLN 545



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 142/290 (48%), Gaps = 26/290 (8%)

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ- 239
           L S+ ISCS+V DSGI  L+    +  L    C  ++ + L  LS L +L  L+  R   
Sbjct: 138 LLSVDISCSEVADSGIDLLRDCSSMQSLACNYCDQISESGLGVLSGLSNLSSLSFKRSNA 197

Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
           ++ +G   F+ + +L  L+L         L+HLK LT LESLN+  C             
Sbjct: 198 VTAEGMRAFANLVNLLNLDLEGCLKIHGGLIHLKDLTKLESLNMRYCNY----------- 246

Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
                       +  S +++L+ LTNL+ + LS   I+D  +  + GL  L  LNL+   
Sbjct: 247 ------------IADSDIKYLTDLTNLKDLQLSCCKITDLGVSYIRGLQKLTHLNLEGCP 294

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
           +T   L A++ L+ L  L+L    I D G       K L+ L +    +TDA + H+K+L
Sbjct: 295 VTAACLEAISGLSSLVLLNLNRCGIYDDGCENFEGLKRLKVLNLGFNYITDACLVHLKEL 354

Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
            SL  LNL  +C + D  L  + GL  L SL +S++ + + GL+HL+  R
Sbjct: 355 ISLESLNL-DSCKIGDDGLSHLKGLVLLQSLELSDTEVGNNGLQHLSGLR 403



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 26/192 (13%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L S++LS ++V ++GL HL    NLQS++ +F + ++D G++ +  L++L S++   N  
Sbjct: 381 LQSLELSDTEVGNNGLQHLSGLRNLQSINLSFTL-VTDIGVKKISVLNSLKSVNLD-NRQ 438

Query: 119 ITAQGMKAFAGLINLVKLDL---------ERCTR---------IHGGLV------NLKGL 154
           IT  G+ A   L  L  LDL           C R         + GG V      N+K L
Sbjct: 439 ITDVGLAALISLTRLTHLDLFGACITDNGTNCFRYFKNLVSLEVCGGFVTDAGVKNIKDL 498

Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
             L  LN+     +TD  ++ +SGLT L +L +S S+V+++G+ +L  L  L  L+L+  
Sbjct: 499 KALTLLNLSQNANLTDKTLELISGLTALINLNVSNSRVSNAGLKHLNDLHNLRSLSLDST 558

Query: 215 PVTAACLDSLSA 226
            VTA  +  L A
Sbjct: 559 RVTANEMRKLRA 570


>gi|255553315|ref|XP_002517700.1| F-box/LRR-repeat protein, putative [Ricinus communis]
 gi|223543332|gb|EEF44864.1| F-box/LRR-repeat protein, putative [Ricinus communis]
          Length = 529

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 338/465 (72%), Positives = 373/465 (80%), Gaps = 49/465 (10%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRDISQQIFNELVYS+ L + ++EAFRDCALQDL LG+ PGVND WMDVI+SQG SLL
Sbjct: 76  MLPRDISQQIFNELVYSQRLNDATIEAFRDCALQDLHLGECPGVNDSWMDVISSQGISLL 135

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLSGSDVTDS                         GL +L+  +NL +L+F   + I+
Sbjct: 136 SVDLSGSDVTDS-------------------------GLAYLKDCTNLQALNFNYCDQIS 170

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
             G                        L N+  L+KLESLNIKWCNCITD+DMK LSGL 
Sbjct: 171 DPG------------------------LSNISDLLKLESLNIKWCNCITDADMKYLSGLV 206

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
            LK LQISCSKVTD GI+YLKGL KL LLNLEGCPVT ACLDSLSAL +L YLNLNRC L
Sbjct: 207 KLKGLQISCSKVTDVGISYLKGLHKLNLLNLEGCPVTVACLDSLSALAALLYLNLNRCHL 266

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           SDDGCE FSK+G LKVLNLGFN+I+D CLVHLKGLTNLESLNLDSC I DEGL NLTGL 
Sbjct: 267 SDDGCEAFSKLGRLKVLNLGFNDISDACLVHLKGLTNLESLNLDSCRIDDEGLANLTGLR 326

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
           +LKCL LSDT+VGSSGLRHLSGLTNLESINLSFT I+DG +RKL+GLSSLKSLNLDARQI
Sbjct: 327 HLKCLVLSDTEVGSSGLRHLSGLTNLESINLSFTMITDGGIRKLSGLSSLKSLNLDARQI 386

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD+GLAALT+LTGLTHLDLFGARITDSG  YLRNFKNL+SLEICGGGLTDAG+++IKDLS
Sbjct: 387 TDSGLAALTNLTGLTHLDLFGARITDSGTHYLRNFKNLQSLEICGGGLTDAGIRNIKDLS 446

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           SL+LLNLSQNCNLTDK+LELISGLTGLVSLNVSNSRITSAGL+HL
Sbjct: 447 SLSLLNLSQNCNLTDKSLELISGLTGLVSLNVSNSRITSAGLQHL 491



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 113/316 (35%), Positives = 168/316 (53%), Gaps = 4/316 (1%)

Query: 157 LESLNIKWCNCITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC- 214
           L+ L++  C  + DS M  +S    +L S+ +S S VTDSG+AYLK    L  LN   C 
Sbjct: 108 LQDLHLGECPGVNDSWMDVISSQGISLLSVDLSGSDVTDSGLAYLKDCTNLQALNFNYCD 167

Query: 215 PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
            ++   L ++S L  L  LN+  C  ++D   +  S +  LK L +  +++TD  + +LK
Sbjct: 168 QISDPGLSNISDLLKLESLNIKWCNCITDADMKYLSGLVKLKGLQISCSKVTDVGISYLK 227

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
           GL  L  LNL+ C +    L +L+ L  L  L L+   +   G    S L  L+ +NL F
Sbjct: 228 GLHKLNLLNLEGCPVTVACLDSLSALAALLYLNLNRCHLSDDGCEAFSKLGRLKVLNLGF 287

Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
             ISD  L  L GL++L+SLNLD+ +I D GLA LT L  L  L L    +  SG  +L 
Sbjct: 288 NDISDACLVHLKGLTNLESLNLDSCRIDDEGLANLTGLRHLKCLVLSDTEVGSSGLRHLS 347

Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
              NL S+ +    +TD G++ +  LSSL  LNL     +TD  L  ++ LTGL  L++ 
Sbjct: 348 GLTNLESINLSFTMITDGGIRKLSGLSSLKSLNLDAR-QITDSGLAALTNLTGLTHLDLF 406

Query: 454 NSRITSAGLRHLNHAR 469
            +RIT +G  +L + +
Sbjct: 407 GARITDSGTHYLRNFK 422



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 94/188 (50%), Gaps = 28/188 (14%)

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
           LS ++V  SGL HL   +NL+S++ +F + I+DGG+  L GLS+L SL+      IT  G
Sbjct: 333 LSDTEVGSSGLRHLSGLTNLESINLSFTM-ITDGGIRKLSGLSSLKSLNLDARQ-ITDSG 390

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI--------------------- 162
           + A   L  L  LDL        G   L+    L+SL I                     
Sbjct: 391 LAALTNLTGLTHLDLFGARITDSGTHYLRNFKNLQSLEICGGGLTDAGIRNIKDLSSLSL 450

Query: 163 ----KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
               + CN +TD  ++ +SGLT L SL +S S++T +G+ +LK L+ L  L LE C VTA
Sbjct: 451 LNLSQNCN-LTDKSLELISGLTGLVSLNVSNSRITSAGLQHLKPLKNLKSLTLESCKVTA 509

Query: 219 ACLDSLSA 226
             +  L +
Sbjct: 510 TDIKKLQS 517


>gi|302796665|ref|XP_002980094.1| hypothetical protein SELMODRAFT_419616 [Selaginella moellendorffii]
 gi|302822036|ref|XP_002992678.1| hypothetical protein SELMODRAFT_162512 [Selaginella moellendorffii]
 gi|300139524|gb|EFJ06263.1| hypothetical protein SELMODRAFT_162512 [Selaginella moellendorffii]
 gi|300152321|gb|EFJ18964.1| hypothetical protein SELMODRAFT_419616 [Selaginella moellendorffii]
          Length = 578

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 274/464 (59%), Positives = 345/464 (74%)

Query: 2   LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
           LPRD++Q+I NELV ++ L+    +AF DCA+QD+ LG YPGV+D WM+VI SQ   LL+
Sbjct: 77  LPRDLTQKILNELVQTQALSRELFQAFEDCAIQDIYLGYYPGVDDSWMEVIGSQKFCLLA 136

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           VD SGS VTD G+  L+ C N++ +  N C  ISD  L +  G +NLTSLSF++N  IT 
Sbjct: 137 VDFSGSMVTDEGVQCLQICENVEIICMNECKYISDISLSYFTGFTNLTSLSFQKNKLITP 196

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
            GM+  AGL NL  LDLERC +IH GLV +KGL KLE LN+ WCNCI  SDMK LSGLTN
Sbjct: 197 AGMRHLAGLPNLKHLDLERCPKIHDGLVYIKGLTKLEKLNLGWCNCIRSSDMKQLSGLTN 256

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
           L  LQIS SKV D GI +LK L+KL +LN+EGCPVT AC+D+++ L SL  LNL  C +S
Sbjct: 257 LLELQISRSKVKDFGITFLKDLKKLEVLNMEGCPVTFACMDTIAGLTSLTTLNLKSCYIS 316

Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
           D GC K   +G+LK LNL +  ++D  +V+LK L +L+ LNLDSC IGD+G+ N   L N
Sbjct: 317 DFGCRKLEGLGNLKNLNLSYTNVSDAGMVYLKNLKSLQFLNLDSCKIGDQGVQNFKNLVN 376

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
           LK L+LSD+ +G+  L  L+GL+ LES+N+S T ++D  L K++GL+SLKSLN+D+RQIT
Sbjct: 377 LKSLDLSDSLIGNHALNFLTGLSKLESLNISSTMVTDMGLHKISGLTSLKSLNIDSRQIT 436

Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
           DTGL ALTSLT LTHLDLF ARITD G   LR+FK L+SLE+CGGG+TD GVK +KDL+ 
Sbjct: 437 DTGLMALTSLTNLTHLDLFSARITDYGIGSLRHFKKLQSLEVCGGGITDVGVKSLKDLTD 496

Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           LT LNLSQN  LTD+ LE +SGLT LVSLNV NS +T+AGL+HL
Sbjct: 497 LTYLNLSQNGQLTDQALEALSGLTKLVSLNVGNSSVTNAGLQHL 540



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/232 (35%), Positives = 130/232 (56%), Gaps = 4/232 (1%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           +L +++LS ++V+D+G+++LK+  +LQ L+ + C +I D G+++ + L NL SL    ++
Sbjct: 328 NLKNLNLSYTNVSDAGMVYLKNLKSLQFLNLDSC-KIGDQGVQNFKNLVNLKSLDLS-DS 385

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
            I    +    GL  L  L++        GL  + GL  L+SLNI     ITD+ +  L+
Sbjct: 386 LIGNHALNFLTGLSKLESLNISSTMVTDMGLHKISGLTSLKSLNID-SRQITDTGLMALT 444

Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
            LTNL  L +  +++TD GI  L+  +KL  L + G  +T   + SL  L  L YLNL++
Sbjct: 445 SLTNLTHLDLFSARITDYGIGSLRHFKKLQSLEVCGGGITDVGVKSLKDLTDLTYLNLSQ 504

Query: 238 -CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
             QL+D   E  S +  L  LN+G + +T+  L HL  L NL SL L SC +
Sbjct: 505 NGQLTDQALEALSGLTKLVSLNVGNSSVTNAGLQHLLPLKNLTSLALQSCKV 556



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 101/288 (35%), Positives = 151/288 (52%), Gaps = 11/288 (3%)

Query: 49  MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL 108
           MD IA   +SL +++L    ++D G   L+   NL++L+ ++   +SD G+ +L+   NL
Sbjct: 296 MDTIAGL-TSLTTLNLKSCYISDFGCRKLEGLGNLKNLNLSY-TNVSDAGMVYLK---NL 350

Query: 109 TSLSFRRNNA--ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
            SL F   ++  I  QG++ F  L+NL  LDL      +  L  L GL KLESLNI    
Sbjct: 351 KSLQFLNLDSCKIGDQGVQNFKNLVNLKSLDLSDSLIGNHALNFLTGLSKLESLNIS-ST 409

Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
            +TD  +  +SGLT+LKSL I   ++TD+G+  L  L  LT L+L    +T   + SL  
Sbjct: 410 MVTDMGLHKISGLTSLKSLNIDSRQITDTGLMALTSLTNLTHLDLFSARITDYGIGSLRH 469

Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDS 285
              L  L +    ++D G +    +  L  LNL  N ++TD+ L  L GLT L SLN+ +
Sbjct: 470 FKKLQSLEVCGGGITDVGVKSLKDLTDLTYLNLSQNGQLTDQALEALSGLTKLVSLNVGN 529

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL--SGLTNLESINL 331
             + + GL +L  L NL  L L   +V    ++ L  S L NL  + L
Sbjct: 530 SSVTNAGLQHLLPLKNLTSLALQSCKVTLWAIQKLQASSLPNLVIVRL 577



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 127/243 (52%), Gaps = 10/243 (4%)

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IG 289
           +Y  ++   +   G +KF     L  ++   + +TDE +  L+   N+E + ++ C  I 
Sbjct: 115 YYPGVDDSWMEVIGSQKFC----LLAVDFSGSMVTDEGVQCLQICENVEIICMNECKYIS 170

Query: 290 DEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGL 347
           D  L   TG  NL  L     + +  +G+RHL+GL NL+ ++L     I DG L  + GL
Sbjct: 171 DISLSYFTGFTNLTSLSFQKNKLITPAGMRHLAGLPNLKHLDLERCPKIHDG-LVYIKGL 229

Query: 348 SSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
           + L+ LNL     I  + +  L+ LT L  L +  +++ D G  +L++ K L  L + G 
Sbjct: 230 TKLEKLNLGWCNCIRSSDMKQLSGLTNLLELQISRSKVKDFGITFLKDLKKLEVLNMEGC 289

Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
            +T A +  I  L+SLT LNL ++C ++D     + GL  L +LN+S + ++ AG+ +L 
Sbjct: 290 PVTFACMDTIAGLTSLTTLNL-KSCYISDFGCRKLEGLGNLKNLNLSYTNVSDAGMVYLK 348

Query: 467 HAR 469
           + +
Sbjct: 349 NLK 351


>gi|356519278|ref|XP_003528300.1| PREDICTED: F-box/LRR-repeat protein 14-like isoform 2 [Glycine max]
          Length = 529

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 289/452 (63%), Positives = 337/452 (74%), Gaps = 28/452 (6%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRDISQ IFN LVYSR LT  SLEAFRDCALQDL LG+Y GVND WM VI+SQGSSLL
Sbjct: 75  MLPRDISQLIFNNLVYSRRLTSASLEAFRDCALQDLYLGEYDGVNDNWMGVISSQGSSLL 134

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLSGSDVTD GL +LKDC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSGSDVTDFGLTYLKDCESLISLNLNYCDQISDRGLECISGLSNLTSLSFRRNDSIS 194

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           AQGM AF+GL+NLVKLDLERC  IHGGLV+L+GL KLESLN+KWCNCITD DMKPLS L 
Sbjct: 195 AQGMSAFSGLVNLVKLDLERCPGIHGGLVHLRGLTKLESLNLKWCNCITDYDMKPLSELA 254

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           +LKSL+IS SKVTD GI++LKGLQKL LLNLEGC VTAACLDSL+ L +L  LNLNRC L
Sbjct: 255 SLKSLEISSSKVTDFGISFLKGLQKLALLNLEGCLVTAACLDSLAELPALSNLNLNRCNL 314

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           SD+GC+K S++ +LKVLNLGFN ITD CLVHLKGLT LESLNLDSC IGDEGLVNL GL 
Sbjct: 315 SDNGCKKISRLENLKVLNLGFNVITDACLVHLKGLTKLESLNLDSCKIGDEGLVNLAGLE 374

Query: 301 NLKCLELSDTQVGSSGLRHLSGLT------------------------NLESINLSFTGI 336
            L CLELSDT+VGS+GL HLSGLT                        NL S+ +    +
Sbjct: 375 QLNCLELSDTEVGSNGLHHLSGLTGLTDLDLFGARITDFGTNYLKKFKNLRSLEICGGVL 434

Query: 337 SDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
           +D  ++ +  LSSL  LNL     +TD  L  ++ LTGL  L++  +RIT++G  +L+  
Sbjct: 435 TDAGVKNIKELSSLVCLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRITNAGLQHLKTL 494

Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
           KNLRSL +    +T      IK L S+ L NL
Sbjct: 495 KNLRSLTLESCKVT---ANDIKKLKSIYLPNL 523



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/289 (32%), Positives = 148/289 (51%), Gaps = 28/289 (9%)

Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC- 238
           ++L S+ +S S VTD G+ YLK  +                        SL  LNLN C 
Sbjct: 131 SSLLSVDLSGSDVTDFGLTYLKDCE------------------------SLISLNLNYCD 166

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
           Q+SD G E  S + +L  L+   N+ I+ + +    GL NL  L+L+ C     GLV+L 
Sbjct: 167 QISDRGLECISGLSNLTSLSFRRNDSISAQGMSAFSGLVNLVKLDLERCPGIHGGLVHLR 226

Query: 298 GLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
           GL  L+ L L     +    ++ LS L +L+S+ +S + ++D  +  L GL  L  LNL+
Sbjct: 227 GLTKLESLNLKWCNCITDYDMKPLSELASLKSLEISSSKVTDFGISFLKGLQKLALLNLE 286

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
              +T   L +L  L  L++L+L    ++D+G   +   +NL+ L +    +TDA + H+
Sbjct: 287 GCLVTAACLDSLAELPALSNLNLNRCNLSDNGCKKISRLENLKVLNLGFNVITDACLVHL 346

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           K L+ L  LNL  +C + D+ L  ++GL  L  L +S++ + S GL HL
Sbjct: 347 KGLTKLESLNL-DSCKIGDEGLVNLAGLEQLNCLELSDTEVGSNGLHHL 394


>gi|168057635|ref|XP_001780819.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162667754|gb|EDQ54376.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 564

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 271/465 (58%), Positives = 353/465 (75%), Gaps = 1/465 (0%)

Query: 2   LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
           +PRD+ QQ+ N+LV  + L+ V+LE F DCALQD+ L  YPGV D W+D+I SQG SLL+
Sbjct: 62  VPRDLIQQVLNDLVRKQLLSPVTLELFSDCALQDVLLADYPGVEDFWLDIIGSQGESLLA 121

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           +D+SGS VTD GL  L+ C+NLQ+L  N C  ISD GL  L GLSNLT+LS R +N ITA
Sbjct: 122 LDISGSPVTDDGLACLQSCTNLQTLSLNSCDHISDEGLSVLSGLSNLTTLSLRSSNLITA 181

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
            GM+ F  L++L  LDLERC  IHGG V L+GL  LE LN+ WC  + ++D+  L+G+ N
Sbjct: 182 AGMRNFTNLVSLKNLDLERCPLIHGGFVYLRGLTTLEKLNVGWCIGVRNADITHLAGIVN 241

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
           LK LQIS SKV DSG+A LKG+  L  L++EGCP+TA  + +++ L +L +LN+N C L 
Sbjct: 242 LKELQISRSKVNDSGVASLKGMTNLRSLSMEGCPITAQSMKTIAGLTTLCHLNINSCYLP 301

Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
           D GC+K   + +L+ LNLG+NE+TD  +V LKGLTNLE LNLDSC +GDEG+ ++ GL N
Sbjct: 302 DSGCQKLEGLINLRTLNLGYNELTDSGMVFLKGLTNLERLNLDSCKVGDEGIKHVKGLLN 361

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQI 360
           L+ L+LSD++VG+ GLR LSGL  LE +NLSFT G++D  L  +A ++SL SLNLD++QI
Sbjct: 362 LRMLDLSDSEVGNVGLRFLSGLKKLEILNLSFTGGVTDIGLSTIATITSLTSLNLDSKQI 421

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TDTGLAALT LTGL +LDLFGA+ITD G A LR+FKNL+SLE+CGGG+TD GV  IKDL+
Sbjct: 422 TDTGLAALTGLTGLKNLDLFGAKITDYGMARLRHFKNLQSLELCGGGITDVGVSSIKDLT 481

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
            LT LNLS N  LTD++L+ +SG+  LVSLNV+NS++T+AGL+HL
Sbjct: 482 LLTSLNLSHNLRLTDRSLQYLSGMENLVSLNVANSKVTNAGLQHL 526



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 183/341 (53%), Gaps = 4/341 (1%)

Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
           +L+ LD+        GL  L+    L++L++  C+ I+D  +  LSGL+NL +L +  S 
Sbjct: 118 SLLALDISGSPVTDDGLACLQSCTNLQTLSLNSCDHISDEGLSVLSGLSNLTTLSLRSSN 177

Query: 192 -VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFS 249
            +T +G+     L  L  L+LE CP+       L  L +L  LN+  C  + +      +
Sbjct: 178 LITAAGMRNFTNLVSLKNLDLERCPLIHGGFVYLRGLTTLEKLNVGWCIGVRNADITHLA 237

Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
            I +LK L +  +++ D  +  LKG+TNL SL+++ C I  + +  + GL  L  L ++ 
Sbjct: 238 GIVNLKELQISRSKVNDSGVASLKGMTNLRSLSMEGCPITAQSMKTIAGLTTLCHLNINS 297

Query: 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369
             +  SG + L GL NL ++NL +  ++D  +  L GL++L+ LNLD+ ++ D G+  + 
Sbjct: 298 CYLPDSGCQKLEGLINLRTLNLGYNELTDSGMVFLKGLTNLERLNLDSCKVGDEGIKHVK 357

Query: 370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC-GGGLTDAGVKHIKDLSSLTLLNLS 428
            L  L  LDL  + + + G  +L   K L  L +   GG+TD G+  I  ++SLT LNL 
Sbjct: 358 GLLNLRMLDLSDSEVGNVGLRFLSGLKKLEILNLSFTGGVTDIGLSTIATITSLTSLNLD 417

Query: 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
               +TD  L  ++GLTGL +L++  ++IT  G+  L H +
Sbjct: 418 SK-QITDTGLAALTGLTGLKNLDLFGAKITDYGMARLRHFK 457



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 94/191 (49%), Gaps = 29/191 (15%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           +DLS S+V + GL  L     L+ L+ +F   ++D GL  +  +++LTSL+   +  IT 
Sbjct: 365 LDLSDSEVGNVGLRFLSGLKKLEILNLSFTGGVTDIGLSTIATITSLTSLNLD-SKQITD 423

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC-------------- 167
            G+ A  GL  L  LDL        G+  L+    L+SL +  C                
Sbjct: 424 TGLAALTGLTGLKNLDLFGAKITDYGMARLRHFKNLQSLEL--CGGGITDVGVSSIKDLT 481

Query: 168 ------------ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
                       +TD  ++ LSG+ NL SL ++ SKVT++G+ +L+ L KLT L L+GC 
Sbjct: 482 LLTSLNLSHNLRLTDRSLQYLSGMENLVSLNVANSKVTNAGLQHLRPLTKLTSLALQGCK 541

Query: 216 VTAACLDSLSA 226
           VT   +D L A
Sbjct: 542 VTRTAVDHLKA 552


>gi|168012567|ref|XP_001758973.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689672|gb|EDQ76042.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 584

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 272/466 (58%), Positives = 349/466 (74%), Gaps = 2/466 (0%)

Query: 2   LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
           +PRD+ Q + +ELV  + L+  +LE F DC+LQD+ L  YPGV D W+ VI SQG SLL+
Sbjct: 81  VPRDLIQLVLDELVRRQLLSPTTLELFSDCSLQDVLLPDYPGVEDSWLQVIGSQGESLLA 140

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           +D+S S VTD GL  L+ C+NLQSL  N C  I+D GL  L GLSNLT+LS R NN ITA
Sbjct: 141 LDISSSTVTDEGLSFLESCTNLQSLILNACESIADEGLTSLSGLSNLTTLSLRSNNMITA 200

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
            GM+ F  L++L  LDL+RC  I GG V LKGL  LE LN+ WC  + +SD+K LSGL N
Sbjct: 201 AGMQNFTHLVSLKNLDLQRCPSIQGGFVYLKGLTTLEKLNVGWCIGVRNSDIKHLSGLVN 260

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQL 240
           LK LQIS SKV+DSG+A L GL KL  L++EGC  VT+  ++S+  L  +++LN+N C L
Sbjct: 261 LKELQISRSKVSDSGLASLTGLTKLRSLSMEGCQAVTSKGMESIGGLTGVWHLNVNSCFL 320

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
            D G +K   + +L+ LN+G+N +++  +  LKGLTNLE LNLDSC IGD G+ N+ GL 
Sbjct: 321 HDSGFQKLEGLINLRTLNMGYNNVSNSGMGFLKGLTNLERLNLDSCKIGDHGIENVKGLV 380

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQ 359
           NLK L+LSDT++ S+GLR L+GL NLES+NLSFT GI+D  LR +A ++SL SLNLD++Q
Sbjct: 381 NLKMLDLSDTEIESAGLRFLTGLKNLESLNLSFTGGIADSGLRTIATITSLTSLNLDSKQ 440

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
           ITDTGLAALT LTGL  LDLFGARITD G A LR+FK L++LE+CGGG+TDAGV+ IKDL
Sbjct: 441 ITDTGLAALTGLTGLKTLDLFGARITDYGMACLRHFKKLQTLELCGGGITDAGVRSIKDL 500

Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           +SLT LNLSQN  LTD +L+ +SG+  LVSLN++NSR+T+AGL+HL
Sbjct: 501 TSLTSLNLSQNMRLTDNSLQYLSGMKNLVSLNLANSRVTNAGLQHL 546



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 112/342 (32%), Positives = 185/342 (54%), Gaps = 5/342 (1%)

Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCS 190
           +L+ LD+   T    GL  L+    L+SL +  C  I D  +  LSGL+NL +L + S +
Sbjct: 137 SLLALDISSSTVTDEGLSFLESCTNLQSLILNACESIADEGLTSLSGLSNLTTLSLRSNN 196

Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFS 249
            +T +G+     L  L  L+L+ CP        L  L +L  LN+  C  + +   +  S
Sbjct: 197 MITAAGMQNFTHLVSLKNLDLQRCPSIQGGFVYLKGLTTLEKLNVGWCIGVRNSDIKHLS 256

Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELS 308
            + +LK L +  ++++D  L  L GLT L SL+++ C  +  +G+ ++ GL  +  L ++
Sbjct: 257 GLVNLKELQISRSKVSDSGLASLTGLTKLRSLSMEGCQAVTSKGMESIGGLTGVWHLNVN 316

Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
              +  SG + L GL NL ++N+ +  +S+  +  L GL++L+ LNLD+ +I D G+  +
Sbjct: 317 SCFLHDSGFQKLEGLINLRTLNMGYNNVSNSGMGFLKGLTNLERLNLDSCKIGDHGIENV 376

Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC-GGGLTDAGVKHIKDLSSLTLLNL 427
             L  L  LDL    I  +G  +L   KNL SL +   GG+ D+G++ I  ++SLT LNL
Sbjct: 377 KGLVNLKMLDLSDTEIESAGLRFLTGLKNLESLNLSFTGGIADSGLRTIATITSLTSLNL 436

Query: 428 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
                +TD  L  ++GLTGL +L++  +RIT  G+  L H +
Sbjct: 437 DSK-QITDTGLAALTGLTGLKTLDLFGARITDYGMACLRHFK 477



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 98/189 (51%), Gaps = 25/189 (13%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           +DLS +++  +GL  L    NL+SL+ +F   I+D GL  +  +++LTSL+   +  IT 
Sbjct: 385 LDLSDTEIESAGLRFLTGLKNLESLNLSFTGGIADSGLRTIATITSLTSLNLD-SKQITD 443

Query: 122 QGMKAFAGLINLVKLDL---------ERCTR---------------IHGGLVNLKGLMKL 157
            G+ A  GL  L  LDL           C R                  G+ ++K L  L
Sbjct: 444 TGLAALTGLTGLKTLDLFGARITDYGMACLRHFKKLQTLELCGGGITDAGVRSIKDLTSL 503

Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
            SLN+     +TD+ ++ LSG+ NL SL ++ S+VT++G+ +L+ L  LT L L+ C VT
Sbjct: 504 TSLNLSQNMRLTDNSLQYLSGMKNLVSLNLANSRVTNAGLQHLRPLTNLTSLALQDCKVT 563

Query: 218 AACLDSLSA 226
              ++ L A
Sbjct: 564 LPAVERLQA 572


>gi|70663921|emb|CAE02935.3| OSJNBa0014K14.7 [Oryza sativa Japonica Group]
          Length = 557

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 278/468 (59%), Positives = 340/468 (72%), Gaps = 28/468 (5%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           +LPRD+SQQ+FNELV    LTE  L AFRDCALQD+CL  YPGV D WM+V ASQG SLL
Sbjct: 79  LLPRDLSQQVFNELVEWNILTEELLGAFRDCALQDICLADYPGVRDAWMEVAASQGQSLL 138

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVD+S SDVTD GL  LKDC NLQSL  N+C QIS+ GL+ L GLSN+TSLSF++ +A+T
Sbjct: 139 SVDISCSDVTDGGLNQLKDCINLQSLSCNYCDQISEHGLKTLSGLSNVTSLSFKKCSAVT 198

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           A+G KAFA ++NL  LDLERC +IHGGLV+LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEKLNLRYCNGITDSDMKHLSDLT 258

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NL+ LQ+SC K++D G++YL+GL KL  LNLEGC VTAACL+ +S L SL  LNL+RC +
Sbjct: 259 NLRELQLSCCKISDLGVSYLRGLSKLAHLNLEGCAVTAACLEVISGLASLVLLNLSRCGV 318

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
            D+GCE    +  LKVLNLGFN ITD CLVHLK L NLE LNLDSC IGDEGL +L    
Sbjct: 319 YDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKELINLECLNLDSCKIGDEGLAHLK--- 375

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
                           + H      L++ N + + +     +KL    + +  + +    
Sbjct: 376 ----------------VFH----KTLKAENHTISLMQTSETKKLG---TFRHRSWEQWTS 412

Query: 361 TDTGLAALTS--LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
           +   +  L+S  LTGLTHLDLFGARITD+G   L+ FKNL+SLE+CGG +TDAGVK+IKD
Sbjct: 413 SSLWMVFLSSQGLTGLTHLDLFGARITDAGTNCLKYFKNLQSLEVCGGLITDAGVKNIKD 472

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
           L +LTLLNLSQN NLTDK+LELIS LT LVSLNVSNSR++++GL HL 
Sbjct: 473 LKALTLLNLSQNGNLTDKSLELISRLTALVSLNVSNSRVSNSGLHHLK 520


>gi|414586494|tpg|DAA37065.1| TPA: hypothetical protein ZEAMMB73_067914 [Zea mays]
          Length = 400

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/322 (66%), Positives = 255/322 (79%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           +LPRD+SQQIFNELV   CLTE SL AFRDC LQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79  LLPRDLSQQIFNELVECGCLTEASLGAFRDCDLQDICLGDYPGVTDAWMEVVASQGQSLL 138

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLS SDVTDSG   LKDCS++QSL  ++C QIS+ GL+ L G SNLTSLS ++  A+T
Sbjct: 139 SVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVT 198

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           A+G KAFA L+NLV LDLERC +I+GGL++LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLT 258

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NL+ LQ+S  K++  G++YL+GL KL  LNLEGC VTA CL+ +S L SL  LNL+RC +
Sbjct: 259 NLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGI 318

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
            D+GCE    +  LK L+LGFN+ITD CL+HLK L NLE LNLDSC IGDEGL +L GL 
Sbjct: 319 CDEGCENLKGLTKLKALSLGFNQITDACLIHLKDLVNLECLNLDSCKIGDEGLFHLKGLI 378

Query: 301 NLKCLELSDTQVGSSGLRHLSG 322
            LK LELSDT+VGS+GLRHLSG
Sbjct: 379 QLKNLELSDTEVGSNGLRHLSG 400



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 130/286 (45%), Gaps = 24/286 (8%)

Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CS 190
           +L+ +DL        G   LK    ++SL   +C+ I++  +K LSG +NL SL I  C+
Sbjct: 136 SLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCA 195

Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
            VT  G      L  L  L+LE CP     L  L  L  L  LNL  C            
Sbjct: 196 AVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYC------------ 243

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
                      N ITD  + +L  LTNL  L L SC I   G+  L GL  L  L L   
Sbjct: 244 -----------NGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGC 292

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
            V +  L  +S L +L  +NLS  GI D     L GL+ LK+L+L   QITD  L  L  
Sbjct: 293 AVTAVCLEVISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGFNQITDACLIHLKD 352

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
           L  L  L+L   +I D G  +L+    L++LE+    +   G++H+
Sbjct: 353 LVNLECLNLDSCKIGDEGLFHLKGLIQLKNLELSDTEVGSNGLRHL 398



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 148/302 (49%), Gaps = 27/302 (8%)

Query: 168 ITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS 225
           +TD+ M+ ++    +L S+ +SCS VTDSG   LK    +  L  + C  ++   L +LS
Sbjct: 122 VTDAWMEVVASQGQSLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLS 181

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
              +L  L++ +C                         +T E       L NL +L+L+ 
Sbjct: 182 GFSNLTSLSIKKCA-----------------------AVTAEGAKAFANLVNLVNLDLER 218

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
           C   + GL++L GL  L+ L L     +  S +++LS LTNL  + LS   IS   +  L
Sbjct: 219 CPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYL 278

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
            GL  L  LNL+   +T   L  ++ L  L  L+L    I D G   L+    L++L + 
Sbjct: 279 RGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLG 338

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
              +TDA + H+KDL +L  LNL  +C + D+ L  + GL  L +L +S++ + S GLRH
Sbjct: 339 FNQITDACLIHLKDLVNLECLNL-DSCKIGDEGLFHLKGLIQLKNLELSDTEVGSNGLRH 397

Query: 465 LN 466
           L+
Sbjct: 398 LS 399


>gi|413937766|gb|AFW72317.1| hypothetical protein ZEAMMB73_434085 [Zea mays]
          Length = 403

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/324 (67%), Positives = 268/324 (82%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRD+SQQIFNELV S  LTE SL+ FRDCALQD+ LG+YPGV D WM+V+ASQ  SLL
Sbjct: 80  MLPRDLSQQIFNELVNSNRLTEASLQVFRDCALQDIGLGEYPGVKDAWMEVVASQKQSLL 139

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVD+S S+V DSG+  L+DCS++QSL  N+C QIS+ GL  L GLSNL+SLSF+R+NA+T
Sbjct: 140 SVDISCSEVADSGIDLLRDCSSMQSLACNYCDQISESGLGVLSGLSNLSSLSFKRSNAVT 199

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           A+GM+AFA L+NL+ LDLE C +IHGGL++LK L KLESLN+++CN I DSD+K L+ LT
Sbjct: 200 AEGMRAFANLVNLLNLDLEGCLKIHGGLIHLKDLTKLESLNMRYCNYIADSDIKYLTDLT 259

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NLK LQ+SC K+TD G++Y++GLQKLT LNLEGCPVTAACL+++S L SL  LNLNRC +
Sbjct: 260 NLKDLQLSCCKITDLGVSYIRGLQKLTHLNLEGCPVTAACLEAISGLSSLVLLNLNRCGI 319

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
            DDGCE F  +  LKVLNLGFN ITD CLVHLK L +LESLNLDSC IGD+GL +L GL 
Sbjct: 320 YDDGCENFEGLKRLKVLNLGFNYITDACLVHLKELISLESLNLDSCKIGDDGLSHLKGLV 379

Query: 301 NLKCLELSDTQVGSSGLRHLSGLT 324
            L+ LELSDT+VG++GL+HLSGL+
Sbjct: 380 LLQSLELSDTEVGNNGLQHLSGLS 403



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 142/288 (49%), Gaps = 26/288 (9%)

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ 239
           +L S+ ISCS+V DSGI  L+    +  L    C  ++ + L  LS L +L  L+  R  
Sbjct: 137 SLLSVDISCSEVADSGIDLLRDCSSMQSLACNYCDQISESGLGVLSGLSNLSSLSFKRSN 196

Query: 240 -LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
            ++ +G   F+ + +L  L+L         L+HLK LT LESLN+  C            
Sbjct: 197 AVTAEGMRAFANLVNLLNLDLEGCLKIHGGLIHLKDLTKLESLNMRYCNY---------- 246

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
                        +  S +++L+ LTNL+ + LS   I+D  +  + GL  L  LNL+  
Sbjct: 247 -------------IADSDIKYLTDLTNLKDLQLSCCKITDLGVSYIRGLQKLTHLNLEGC 293

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
            +T   L A++ L+ L  L+L    I D G       K L+ L +    +TDA + H+K+
Sbjct: 294 PVTAACLEAISGLSSLVLLNLNRCGIYDDGCENFEGLKRLKVLNLGFNYITDACLVHLKE 353

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
           L SL  LNL  +C + D  L  + GL  L SL +S++ + + GL+HL+
Sbjct: 354 LISLESLNLD-SCKIGDDGLSHLKGLVLLQSLELSDTEVGNNGLQHLS 400


>gi|217074604|gb|ACJ85662.1| unknown [Medicago truncatula]
          Length = 331

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/297 (70%), Positives = 245/297 (82%)

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           MK +SG  NLK LQIS S +TD GI+YL+GLQKL+ LN+EGC +TAAC + +SAL +L  
Sbjct: 1   MKAISGFINLKELQISNSSITDLGISYLRGLQKLSTLNVEGCSITAACFEYISALAALAC 60

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           LNLNRC LSDDG EKFS +  LK L+L FN+ITD CLVHLKGLT LE LNLDSC IGDEG
Sbjct: 61  LNLNRCGLSDDGFEKFSGLTGLKRLSLAFNKITDACLVHLKGLTKLEYLNLDSCQIGDEG 120

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
           LVNLTGL  LK L LSDT+VG+SG+R++SGL  LE +NLSFT ++D  L++L GL++LKS
Sbjct: 121 LVNLTGLTLLKSLVLSDTEVGNSGIRYISGLNKLEDLNLSFTSVTDNGLKRLLGLTNLKS 180

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
           LNLDARQITD GLA LTSL+GL  LDLFGARITDSG  YLR+FKNL+SLEICGG LTDAG
Sbjct: 181 LNLDARQITDAGLANLTSLSGLITLDLFGARITDSGTTYLRSFKNLQSLEICGGLLTDAG 240

Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           VK+I+++ SLT LNLSQNC LTDKTLELISG+T L SLNVSNSR+T+ GLR+L   +
Sbjct: 241 VKNIREIVSLTQLNLSQNCKLTDKTLELISGMTALRSLNVSNSRVTNEGLRYLKPLK 297



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 112/325 (34%), Positives = 170/325 (52%), Gaps = 26/325 (8%)

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC---------------- 167
           MKA +G INL +L +   +    G+  L+GL KL +LN++ C+                 
Sbjct: 1   MKAISGFINLKELQISNSSITDLGISYLRGLQKLSTLNVEGCSITAACFEYISALAALAC 60

Query: 168 -------ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
                  ++D   +  SGLT LK L ++ +K+TD+ + +LKGL KL  LNL+ C +    
Sbjct: 61  LNLNRCGLSDDGFEKFSGLTGLKRLSLAFNKITDACLVHLKGLTKLEYLNLDSCQIGDEG 120

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
           L +L+ L  L  L L+  ++ + G    S +  L+ LNL F  +TD  L  L GLTNL+S
Sbjct: 121 LVNLTGLTLLKSLVLSDTEVGNSGIRYISGLNKLEDLNLSFTSVTDNGLKRLLGLTNLKS 180

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           LNLD+  I D GL NLT L  L  L+L   ++  SG  +L    NL+S+ +    ++D  
Sbjct: 181 LNLDARQITDAGLANLTSLSGLITLDLFGARITDSGTTYLRSFKNLQSLEICGGLLTDAG 240

Query: 341 LRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
           ++ +  + SL  LNL    ++TD  L  ++ +T L  L++  +R+T+ G  YL+  KNLR
Sbjct: 241 VKNIREIVSLTQLNLSQNCKLTDKTLELISGMTALRSLNVSNSRVTNEGLRYLKPLKNLR 300

Query: 400 --SLEICGGGLTDAGVKHIKDLSSL 422
             SLE C     D    H  DL +L
Sbjct: 301 TLSLESCKVNAADIKKLHSTDLPNL 325



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 109/326 (33%), Positives = 165/326 (50%), Gaps = 38/326 (11%)

Query: 72  SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA---------- 121
           SG I+LK+     S        I+D G+ +LRGL  L++L+     +ITA          
Sbjct: 5   SGFINLKELQISNS-------SITDLGISYLRGLQKLSTLNV-EGCSITAACFEYISALA 56

Query: 122 --------------QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
                          G + F+GL  L +L L         LV+LKGL KLE LN+  C  
Sbjct: 57  ALACLNLNRCGLSDDGFEKFSGLTGLKRLSLAFNKITDACLVHLKGLTKLEYLNLDSCQ- 115

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           I D  +  L+GLT LKSL +S ++V +SGI Y+ GL KL  LNL    VT   L  L  L
Sbjct: 116 IGDEGLVNLTGLTLLKSLVLSDTEVGNSGIRYISGLNKLEDLNLSFTSVTDNGLKRLLGL 175

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
            +L  LNL+  Q++D G    + +  L  L+L    ITD    +L+   NL+SL +  CG
Sbjct: 176 TNLKSLNLDARQITDAGLANLTSLSGLITLDLFGARITDSGTTYLRSFKNLQSLEI--CG 233

Query: 288 --IGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
             + D G+ N+  + +L  L LS   ++    L  +SG+T L S+N+S + +++  LR L
Sbjct: 234 GLLTDAGVKNIREIVSLTQLNLSQNCKLTDKTLELISGMTALRSLNVSNSRVTNEGLRYL 293

Query: 345 AGLSSLKSLNLDARQITDTGLAALTS 370
             L +L++L+L++ ++    +  L S
Sbjct: 294 KPLKNLRTLSLESCKVNAADIKKLHS 319



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 133/228 (58%), Gaps = 4/228 (1%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           + L+ + +TD+ L+HLK  + L+ L+ + C QI D GL +L GL+ L SL    +  +  
Sbjct: 85  LSLAFNKITDACLVHLKGLTKLEYLNLDSC-QIGDEGLVNLTGLTLLKSLVL-SDTEVGN 142

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
            G++  +GL  L  L+L   +    GL  L GL  L+SLN+     ITD+ +  L+ L+ 
Sbjct: 143 SGIRYISGLNKLEDLNLSFTSVTDNGLKRLLGLTNLKSLNLD-ARQITDAGLANLTSLSG 201

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQL 240
           L +L +  +++TDSG  YL+  + L  L + G  +T A + ++  + SL  LNL++ C+L
Sbjct: 202 LITLDLFGARITDSGTTYLRSFKNLQSLEICGGLLTDAGVKNIREIVSLTQLNLSQNCKL 261

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
           +D   E  S + +L+ LN+  + +T+E L +LK L NL +L+L+SC +
Sbjct: 262 TDKTLELISGMTALRSLNVSNSRVTNEGLRYLKPLKNLRTLSLESCKV 309



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 78/132 (59%), Gaps = 4/132 (3%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           S L+++DL G+ +TDSG  +L+   NLQSL+    + ++D G++++R + +LT L+  +N
Sbjct: 200 SGLITLDLFGARITDSGTTYLRSFKNLQSLEICGGL-LTDAGVKNIREIVSLTQLNLSQN 258

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             +T + ++  +G+  L  L++      + GL  LK L  L +L+++ C  +  +D+K L
Sbjct: 259 CKLTDKTLELISGMTALRSLNVSNSRVTNEGLRYLKPLKNLRTLSLESCK-VNAADIKKL 317

Query: 177 --SGLTNLKSLQ 186
             + L NL S +
Sbjct: 318 HSTDLPNLISFR 329


>gi|14423508|gb|AAK62436.1|AF386991_1 Unknown protein [Arabidopsis thaliana]
 gi|20148357|gb|AAM10069.1| unknown protein [Arabidopsis thaliana]
          Length = 332

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 230/294 (78%), Positives = 260/294 (88%), Gaps = 1/294 (0%)

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLF 231
           M+PLS LTNL+SLQI CSK+TD GI+YLKGL KL LLNLEGC  VTAACLD+L+AL  L 
Sbjct: 1   MEPLSVLTNLRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLM 60

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
           YLNLNRC  SD GCEKFS + +LK+LNLG N IT+ CLVHLKGLT LESLNLDSC IGDE
Sbjct: 61  YLNLNRCNFSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDE 120

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
           GLV+L+G+  LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D  LRKL+GL+SL+
Sbjct: 121 GLVHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLR 180

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
           +LNLDAR +TD GL+ALTSLTGLTHLDLFGARITDSG  +LRN K L+SLEICGGGLTD 
Sbjct: 181 TLNLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDT 240

Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           GVK+IKDLSSLTLLNLSQN NLTDKTLELISGLTGLVSLNVSNSR++S+GLRHL
Sbjct: 241 GVKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHL 294



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 108/313 (34%), Positives = 160/313 (51%), Gaps = 27/313 (8%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L S+ +  S +TD G+ +LK  + L  L+   C  ++   L+ L  L+ L  L+  R 
Sbjct: 8   TNLRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRC 67

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N  +  G + F+ LINL  L+L      +  LV+LKGL KLESLN+  C  I D  +  L
Sbjct: 68  N-FSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCR-IGDEGLVHL 125

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           SG+  LKSL++S ++V  +G+ +L GL  L  +NL    VT + L  LS L SL  LNL+
Sbjct: 126 SGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLD 185

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
              ++D G    + +  L  L+L    ITD    HL+ L  L+SL +   G+ D G+ N+
Sbjct: 186 ARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNI 245

Query: 297 -------------------------TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
                                    +GL  L  L +S+++V SSGLRHL  L NL S+ L
Sbjct: 246 KDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTL 305

Query: 332 SFTGISDGSLRKL 344
               +S   +RKL
Sbjct: 306 ESCKLSANDIRKL 318



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 101/192 (52%), Gaps = 26/192 (13%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L S++LS ++V  +GL HL   SNL+S++ +F + ++D GL  L GL++L +L+    + 
Sbjct: 131 LKSLELSDTEVGSNGLRHLSGLSNLESINLSFTV-VTDSGLRKLSGLTSLRTLNLDARH- 188

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL-------------NIK-- 163
           +T  G+ A   L  L  LDL        G  +L+ L KL+SL             NIK  
Sbjct: 189 VTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDL 248

Query: 164 ---------WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
                      + +TD  ++ +SGLT L SL +S S+V+ SG+ +LK L+ L  L LE C
Sbjct: 249 SSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTLESC 308

Query: 215 PVTAACLDSLSA 226
            ++A  +  L A
Sbjct: 309 KLSANDIRKLQA 320


>gi|255088361|ref|XP_002506103.1| predicted protein [Micromonas sp. RCC299]
 gi|226521374|gb|ACO67361.1| predicted protein [Micromonas sp. RCC299]
          Length = 610

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 190/469 (40%), Positives = 278/469 (59%), Gaps = 2/469 (0%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           +LP D+SQ++F +LV +R LT      F  C L +  L  YPG+ D W+ V+A+   +L 
Sbjct: 100 VLPSDLSQRVFEDLVQTRRLTARVTGDFIGCHLTEANLRSYPGLTDDWLAVLATSAPNLS 159

Query: 61  SVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
           S++LSG + +T  G   L  C  L+SLD + C  ++D  L  +  +S L  L+    + I
Sbjct: 160 SINLSGCAALTPDGFNALAACVELESLDVSECPGVNDNALAAVASMSRLRRLACAGCDGI 219

Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
           T  G++  +G   L  ++LERC  +  GLV L GL +LE L+  WCN +  +D+  L  L
Sbjct: 220 TGAGLRYVSGATKLRCVNLERCNGLTNGLVYLSGLTELERLDAGWCNHVDSNDVTSLRSL 279

Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
             LK L ++ +KV D G+A +  L  L  LNL GC +T      L  L +L  L+L  C+
Sbjct: 280 KKLKHLNLARTKVDDQGVATIGSLSALETLNLAGCRITDGACFLLGGLTALKELSLEWCR 339

Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
           + D G  + + +  L+VLNLG++ +TDE + HL  L  L  ++LDSC +GD+    L   
Sbjct: 340 VGDGGVRRLASLAKLEVLNLGYSSVTDEGVQHLAPLVKLREIDLDSCQVGDDACKALAEW 399

Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
            NL+ + LSDT VG+ GL+ +S LT L  +NLS++ +SD  +  L   +S++SL+LD R 
Sbjct: 400 PNLEDVNLSDTAVGNLGLKRISKLTRLRRVNLSYSNVSDDGVMYLENAASIRSLSLDTRM 459

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
           +TD GL  L  L  +  LDLFGARITD GA +LR+   L++LE+CGGG+TDAGVKHI D 
Sbjct: 460 VTDEGLGYLAKLKDIEELDLFGARITDEGAKHLRHMPRLKTLELCGGGITDAGVKHIGDA 519

Query: 420 -SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNH 467
              LTLLNL QN  ++D  +  +  L  L SLN+  SRI++ G+  L+ 
Sbjct: 520 CRELTLLNLGQNFRISDAAVPFLLQLHKLGSLNLQYSRISNEGVTQLSQ 568



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 100/200 (50%), Gaps = 13/200 (6%)

Query: 38  LGQYPGVNDKWMDVIA---------SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF 88
           L ++P + D  +   A         S+ + L  V+LS S+V+D G+++L++ ++++SL  
Sbjct: 396 LAEWPNLEDVNLSDTAVGNLGLKRISKLTRLRRVNLSYSNVSDDGVMYLENAASIRSLSL 455

Query: 89  NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
           +  + ++D GL +L  L ++  L       IT +G K    +  L  L+L        G+
Sbjct: 456 DTRM-VTDEGLGYLAKLKDIEELDLF-GARITDEGAKHLRHMPRLKTLELCGGGITDAGV 513

Query: 149 VNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
            ++     +L  LN+     I+D+ +  L  L  L SL +  S++++ G+  L  L  LT
Sbjct: 514 KHIGDACRELTLLNLGQNFRISDAAVPFLLQLHKLGSLNLQYSRISNEGVTQLSQLSNLT 573

Query: 208 LLNLEGC-PVTAACLDSLSA 226
            L L+GC  V+ A ++ L A
Sbjct: 574 TLALKGCNRVSQAAVEELRA 593


>gi|414586492|tpg|DAA37063.1| TPA: hypothetical protein ZEAMMB73_067914 [Zea mays]
          Length = 356

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 176/273 (64%), Positives = 215/273 (78%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           +LPRD+SQQIFNELV   CLTE SL AFRDC LQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79  LLPRDLSQQIFNELVECGCLTEASLGAFRDCDLQDICLGDYPGVTDAWMEVVASQGQSLL 138

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLS SDVTDSG   LKDCS++QSL  ++C QIS+ GL+ L G SNLTSLS ++  A+T
Sbjct: 139 SVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVT 198

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           A+G KAFA L+NLV LDLERC +I+GGL++LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLT 258

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NL+ LQ+S  K++  G++YL+GL KL  LNLEGC VTA CL+ +S L SL  LNL+RC +
Sbjct: 259 NLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGI 318

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
            D+GCE    +  LK L+LGFN+ITD CL+HLK
Sbjct: 319 CDEGCENLKGLTKLKALSLGFNQITDACLIHLK 351



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 110/217 (50%), Gaps = 4/217 (1%)

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-T 310
           SL  ++L  +++TD     LK  ++++SL  D C  I + GL  L+G  NL  L +    
Sbjct: 136 SLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCA 195

Query: 311 QVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369
            V + G +  + L NL +++L     I+ G +         K        ITD+ +  L+
Sbjct: 196 AVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLS 255

Query: 370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 429
            LT L  L L   +I+  G +YLR    L  L + G  +T   ++ I +L+SL LLNLS+
Sbjct: 256 DLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSR 315

Query: 430 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
            C + D+  E + GLT L +L++  ++IT A L HL 
Sbjct: 316 -CGICDEGCENLKGLTKLKALSLGFNQITDACLIHLK 351



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/238 (34%), Positives = 106/238 (44%), Gaps = 24/238 (10%)

Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CS 190
           +L+ +DL        G   LK    ++SL   +C+ I++  +K LSG +NL SL I  C+
Sbjct: 136 SLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCA 195

Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
            VT  G      L  L  L+LE CP     L  L  L  L  LNL  C            
Sbjct: 196 AVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYC------------ 243

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
                      N ITD  + +L  LTNL  L L SC I   G+  L GL  L  L L   
Sbjct: 244 -----------NGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGC 292

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
            V +  L  +S L +L  +NLS  GI D     L GL+ LK+L+L   QITD  L  L
Sbjct: 293 AVTAVCLEVISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGFNQITDACLIHL 350



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 121/254 (47%), Gaps = 28/254 (11%)

Query: 168 ITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS 225
           +TD+ M+ ++    +L S+ +SCS VTDSG   LK    +  L  + C  ++   L +LS
Sbjct: 122 VTDAWMEVVASQGQSLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLS 181

Query: 226 ALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
              +L  L++ +C  ++ +G + F+                         L NL +L+L+
Sbjct: 182 GFSNLTSLSIKKCAAVTAEGAKAFAN------------------------LVNLVNLDLE 217

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
            C   + GL++L GL  L+ L L     +  S +++LS LTNL  + LS   IS   +  
Sbjct: 218 RCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLTNLRELQLSSCKISAFGVSY 277

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           L GL  L  LNL+   +T   L  ++ L  L  L+L    I D G   L+    L++L +
Sbjct: 278 LRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGICDEGCENLKGLTKLKALSL 337

Query: 404 CGGGLTDAGVKHIK 417
               +TDA + H+K
Sbjct: 338 GFNQITDACLIHLK 351



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 132/258 (51%), Gaps = 9/258 (3%)

Query: 187 ISCSKVTDSGIAYLKG--LQKLTLLNLEGCPVTAACLDSLSALG-SLFYLNLNRCQLSDD 243
           + C  +T++ +   +   LQ + L +  G  VT A ++ +++ G SL  ++L+   ++D 
Sbjct: 93  VECGCLTEASLGAFRDCDLQDICLGDYPG--VTDAWMEVVASQGQSLLSVDLSCSDVTDS 150

Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN 301
           G        S++ L   + ++I++  L  L G +NL SL++  C  +  EG      L N
Sbjct: 151 GFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVTAEGAKAFANLVN 210

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQI 360
           L  L+L      + GL HL GL  LE +NL +  GI+D  ++ L+ L++L+ L L + +I
Sbjct: 211 LVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLTNLRELQLSSCKI 270

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           +  G++ L  L  L HL+L G  +T      +    +L  L +   G+ D G +++K L+
Sbjct: 271 SAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGICDEGCENLKGLT 330

Query: 421 SLTLLNLSQNCNLTDKTL 438
            L  L+L  N  +TD  L
Sbjct: 331 KLKALSLGFN-QITDACL 347


>gi|24461848|gb|AAN62335.1|AF506028_2 CTV.1 [Citrus trifoliata]
          Length = 205

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 165/238 (69%), Positives = 167/238 (70%), Gaps = 67/238 (28%)

Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
           LGSLFYLNLNRCQLSDDGCEKFS        NLGFNEITDECLV+          +LDSC
Sbjct: 1   LGSLFYLNLNRCQLSDDGCEKFS--------NLGFNEITDECLVY----------HLDSC 42

Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
           GIGDEGLVN                                   LSFTGISDGSLRKLAG
Sbjct: 43  GIGDEGLVNY----------------------------------LSFTGISDGSLRKLAG 68

Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
           LSSLKSLNLDARQITDTGLAALTS     HLDLFGARITDSGAAYLRNFKNLRSLEICGG
Sbjct: 69  LSSLKSLNLDARQITDTGLAALTS----AHLDLFGARITDSGAAYLRNFKNLRSLEICGG 124

Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
           GLTDAGVKHIKDLSSL LLNLSQNCNLTDKTLE            VSNSRITSAGLRH
Sbjct: 125 GLTDAGVKHIKDLSSLALLNLSQNCNLTDKTLEY-----------VSNSRITSAGLRH 171


>gi|384254255|gb|EIE27729.1| RNI-like protein, partial [Coccomyxa subellipsoidea C-169]
          Length = 515

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 172/466 (36%), Positives = 266/466 (57%), Gaps = 18/466 (3%)

Query: 2   LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
           LP D++Q + +EL+Y+  L +  L  F    + +L LG+  GV D W+  +A QG+ +  
Sbjct: 24  LPADLAQLVLDELIYTASLDQEGLALFSRQHIYNLKLGECAGVEDDWLRHLAPQGTGMHG 83

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           + ++      SG   L   +NL+ L    C  +S   L  L  LS +TSL+ +  + I+ 
Sbjct: 84  LFIT----KHSGAAGL---TNLRDLSLQGCEGLSS--LSALTDLSKVTSLNLKGCSGIS- 133

Query: 122 QGMKAFAGLINLVKLD--LERC-TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
            G++  +G +    L    + C +    G     G+ +LE+L++ WC+ ITD+D+K L+ 
Sbjct: 134 -GLRHLSGALFCASLGSVAQMCGSEYWSG--AWAGMKQLENLDLSWCSGITDADVKALAA 190

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNR 237
           LT +  LQ+S + V DSGI  L+ + +L  L L GC  ++   + S+SAL SL  LNL  
Sbjct: 191 LTAITGLQLSRTLVADSGIFALRSMSRLRCLGLAGCSGISNGAVGSVSALTSLEELNLEW 250

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
           C +S  G    S +  L+ LN+ +    D  L     LTNL +LNLDSC + D GL +++
Sbjct: 251 CTVSVKGLSHLSTLTELRSLNVAYTTAGDNALAAWTSLTNLRTLNLDSCPVSDRGLHHIS 310

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLD 356
            L NL+ + LSDT +   G+   + L  ++ +NLS+T G+ D  L  +A L++L  L+LD
Sbjct: 311 ELTNLEDVNLSDTAITDQGMIAFAPLKGMQRLNLSYTAGVGDLGLAAVARLTALTELHLD 370

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
            R  TD GL  +  LT L  LDLFGARITD+G  +LR F+ L  LEICGGG++D GVK +
Sbjct: 371 GRSFTDVGLRTIAPLTQLQTLDLFGARITDAGCVHLRPFRRLERLEICGGGISDEGVKEL 430

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
             L+ L  L+L+QN  +TD+    +SGL+ L  LN++ +++T  G+
Sbjct: 431 IWLTGLQHLSLAQNARITDRASLFLSGLSQLRGLNLTGTQLTGNGI 476



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 174/348 (50%), Gaps = 36/348 (10%)

Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL---TNLKS 184
           AGL NL  L L+ C  +   L  L  L K+ SLN+K C+ I  S ++ LSG     +L S
Sbjct: 93  AGLTNLRDLSLQGCEGL-SSLSALTDLSKVTSLNLKGCSGI--SGLRHLSGALFCASLGS 149

Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDD 243
           +   C     SG     G+++L  L+L  C  +T A + +L+AL ++  L L+R  ++D 
Sbjct: 150 VAQMCGSEYWSGA--WAGMKQLENLDLSWCSGITDADVKALAALTAITGLQLSRTLVADS 207

Query: 244 GCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           G      +  L+ L L G + I++  +  +  LT+LE LNL+ C                
Sbjct: 208 GIFALRSMSRLRCLGLAGCSGISNGAVGSVSALTSLEELNLEWC---------------- 251

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
                    V   GL HLS LT L S+N+++T   D +L     L++L++LNLD+  ++D
Sbjct: 252 --------TVSVKGLSHLSTLTELRSLNVAYTTAGDNALAAWTSLTNLRTLNLDSCPVSD 303

Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC-GGGLTDAGVKHIKDLSS 421
            GL  ++ LT L  ++L    ITD G       K ++ L +    G+ D G+  +  L++
Sbjct: 304 RGLHHISELTNLEDVNLSDTAITDQGMIAFAPLKGMQRLNLSYTAGVGDLGLAAVARLTA 363

Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           LT L+L    + TD  L  I+ LT L +L++  +RIT AG  HL   R
Sbjct: 364 LTELHLDGR-SFTDVGLRTIAPLTQLQTLDLFGARITDAGCVHLRPFR 410



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 170/348 (48%), Gaps = 9/348 (2%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
           L++L L    G+ D  +  +A+  +++  + LS + V DSG+  L+  S L+ L    C 
Sbjct: 169 LENLDLSWCSGITDADVKALAAL-TAITGLQLSRTLVADSGIFALRSMSRLRCLGLAGCS 227

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
            IS+G +  +  L++L  L+      ++ +G+   + L  L  L++   T     L    
Sbjct: 228 GISNGAVGSVSALTSLEELNLEWCT-VSVKGLSHLSTLTELRSLNVAYTTAGDNALAAWT 286

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI---AYLKGLQKLTLL 209
            L  L +LN+  C  ++D  +  +S LTNL+ + +S + +TD G+   A LKG+Q+L L 
Sbjct: 287 SLTNLRTLNLDSCP-VSDRGLHHISELTNLEDVNLSDTAITDQGMIAFAPLKGMQRLNLS 345

Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
              G  V    L +++ L +L  L+L+    +D G    + +  L+ L+L    ITD   
Sbjct: 346 YTAG--VGDLGLAAVARLTALTELHLDGRSFTDVGLRTIAPLTQLQTLDLFGARITDAGC 403

Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLES 328
           VHL+    LE L +   GI DEG+  L  L  L+ L L+ + ++       LSGL+ L  
Sbjct: 404 VHLRPFRRLERLEICGGGISDEGVKELIWLTGLQHLSLAQNARITDRASLFLSGLSQLRG 463

Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
           +NL+ T ++   +  L  L++L+SL L   ++       L  L    H
Sbjct: 464 LNLTGTQLTGNGILPLRSLTNLESLCLKRTRVKQAAADRLQPLLPRIH 511


>gi|452822896|gb|EME29911.1| leucine-rich repeat family protein [Galdieria sulphuraria]
          Length = 588

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 168/458 (36%), Positives = 262/458 (57%), Gaps = 4/458 (0%)

Query: 3   PRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSV 62
           PR++ Q++   LV SR L    LE  +   +  L       V + W+  + +  S+L  +
Sbjct: 80  PRELIQRLVEYLVESRRLNCEFLETLQQHCVYRLRFTSQLQVTNDWLFYLQNL-STLSRL 138

Query: 63  DLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           +L     ++D GL +L +  +L  LD   C+QI+  GL+HL GL  L  L  +    IT+
Sbjct: 139 ELKDCKFISDEGLSNLAEIVSLTYLDLAGCVQITSEGLQHLAGLKYLKVLVLKSCKQITS 198

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           +G+   A L NL +LD+E+C+ +    L +L  L KLE  N  WC  ++D  +  LS   
Sbjct: 199 EGLSYLANLHNLTRLDIEQCSEVSDSFLQSLNRLTKLEDFNCAWCFRLSDEGLTILSNFH 258

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
            ++ L IS ++V+ +   +L G+ +L +L + G   +      L  L SL  L++  C +
Sbjct: 259 RMRYLNISKTRVSQNFGRFLPGMPRLRVLKVAGTGFSDRDAQYLRGLYSLRELDVEGCSV 318

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
            D        +  ++ LNLG+ +I++  + ++L  +  L+ LNLDSC IGD  + +L+ L
Sbjct: 319 GDPFLATIYALPRIRKLNLGYTKISERGVSLYLGNMLKLQYLNLDSCLIGDFAVEHLSRL 378

Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
             LKCL+L+DT V SSGL  L+ LT+LE++ L++T +S+  L  L  L+ L+SL+LD R 
Sbjct: 379 EQLKCLDLTDTTVSSSGLSGLANLTSLETLILAYTSVSNSGLEHLKNLTKLESLSLDTRG 438

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
           I+D GLA L  L  L HLDLFGA++TD+G  ++     L SLE+C GG+TDAG++ I  L
Sbjct: 439 ISDDGLAYLKKLKHLKHLDLFGAKVTDNGLRHISEISTLESLEVCAGGVTDAGLESIGKL 498

Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
            +L  LNLSQN  +TD  L  +S L+ L SLN+S + +
Sbjct: 499 RALRTLNLSQNHRITDAGLIHLSCLSHLTSLNLSYTNV 536



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 132/257 (51%), Gaps = 10/257 (3%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSDVTDSGL-IHLKDCSNLQSLDFNFCIQISDGGLEHL 102
           V D ++  I +    +  ++L  + +++ G+ ++L +   LQ L+ + C+ I D  +EHL
Sbjct: 318 VGDPFLATIYAL-PRIRKLNLGYTKISERGVSLYLGNMLKLQYLNLDSCL-IGDFAVEHL 375

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
             L  L  L    +  +++ G+   A L +L  L L   +  + GL +LK L KLESL++
Sbjct: 376 SRLEQLKCLDLT-DTTVSSSGLSGLANLTSLETLILAYTSVSNSGLEHLKNLTKLESLSL 434

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP--VTAAC 220
                I+D  +  L  L +LK L +  +KVTD+G+ ++  +   TL +LE C   VT A 
Sbjct: 435 D-TRGISDDGLAYLKKLKHLKHLDLFGAKVTDNGLRHISEIS--TLESLEVCAGGVTDAG 491

Query: 221 LDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
           L+S+  L +L  LNL++  +++D G    S +  L  LNL +  + D     ++   +L 
Sbjct: 492 LESIGKLRALRTLNLSQNHRITDAGLIHLSCLSHLTSLNLSYTNVGDGICSLVQKCPSLR 551

Query: 280 SLNLDSCGIGDEGLVNL 296
            + ++ CG+     + L
Sbjct: 552 MIGIERCGLSIAAKIRL 568


>gi|59802533|gb|AAX07510.1| putative regulatory subunit [Gemmata sp. Wa1-1]
          Length = 550

 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 168/411 (40%), Positives = 242/411 (58%), Gaps = 6/411 (1%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L S++L  + VTD+GL  LK  + L SLD     +++D GL+ L+GL++LT L  R  
Sbjct: 90  TNLTSLNLGSTGVTDAGLQDLKGLNKLASLDLR-GTEVTDVGLQELKGLNSLTELRLRAT 148

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKP 175
             +T  G++   GL NL  LDL R TR+   GL  LKGL  L SL+++    +TD+ +K 
Sbjct: 149 E-VTNVGLQELKGLNNLASLDL-RDTRVTDVGLQELKGLNNLASLDLRDTK-VTDTGLKE 205

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           L GLTNL +L +  ++VTD G+  L GL KL  L+L    VT   L  L +   L  L+L
Sbjct: 206 LKGLTNLTALDLFSTQVTDVGLKELNGLTKLASLDLSRTGVTGTGLIELKSFTKLALLDL 265

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           +  +++D G  +   + SL  L+LG   +TD  L  LKGLT+L SL+L      D GL  
Sbjct: 266 SGTRVTDAGLHQLKGLTSLTSLHLGGTRVTDVGLKELKGLTSLTSLHLSGTRTTDAGLQE 325

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           L GL NL  L LSDT+V   GL+ L   T L S++L  TG++D  L++L GL++L +L+L
Sbjct: 326 LNGLTNLTSLHLSDTRVTDVGLKELKSFTKLTSLHLGGTGVTDTGLKELKGLTNLTALDL 385

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
            + Q+TD GL  L  LT LT L L  A ITD+G   L+    L  L++ G  +TDAG++ 
Sbjct: 386 FSTQVTDVGLQELNGLTKLTSLYLSAAAITDTGLKELKELTQLALLDLSGTRVTDAGLQE 445

Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
           +  L+ L  L L     +TD  L+ + GLT L SL++S +R+T AGL+ L+
Sbjct: 446 LSGLTKLAFLRLG-GTRVTDAGLKELKGLTSLTSLHLSGTRVTDAGLQELS 495



 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 162/411 (39%), Positives = 241/411 (58%), Gaps = 4/411 (0%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L S+ LS + VT+ GL  LK+ +NL +LD  F   ++D GL+ L+GL+NLTSL+    
Sbjct: 18  ANLTSLGLSATKVTNEGLKELKELTNLTALDL-FSTGVTDTGLQELKGLTNLTSLNLGVT 76

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             +T  G++   GL NL  L+L        GL +LKGL KL SL+++    +TD  ++ L
Sbjct: 77  Q-VTGAGLQELKGLTNLTSLNLGSTGVTDAGLQDLKGLNKLASLDLRGTE-VTDVGLQEL 134

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
            GL +L  L++  ++VT+ G+  LKGL  L  L+L    VT   L  L  L +L  L+L 
Sbjct: 135 KGLNSLTELRLRATEVTNVGLQELKGLNNLASLDLRDTRVTDVGLQELKGLNNLASLDLR 194

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             +++D G ++   + +L  L+L   ++TD  L  L GLT L SL+L   G+   GL+ L
Sbjct: 195 DTKVTDTGLKELKGLTNLTALDLFSTQVTDVGLKELNGLTKLASLDLSRTGVTGTGLIEL 254

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
                L  L+LS T+V  +GL  L GLT+L S++L  T ++D  L++L GL+SL SL+L 
Sbjct: 255 KSFTKLALLDLSGTRVTDAGLHQLKGLTSLTSLHLGGTRVTDVGLKELKGLTSLTSLHLS 314

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
             + TD GL  L  LT LT L L   R+TD G   L++F  L SL + G G+TD G+K +
Sbjct: 315 GTRTTDAGLQELNGLTNLTSLHLSDTRVTDVGLKELKSFTKLTSLHLGGTGVTDTGLKEL 374

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNH 467
           K L++LT L+L  +  +TD  L+ ++GLT L SL +S + IT  GL+ L  
Sbjct: 375 KGLTNLTALDLF-STQVTDVGLQELNGLTKLTSLYLSAAAITDTGLKELKE 424



 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 174/476 (36%), Positives = 257/476 (53%), Gaps = 29/476 (6%)

Query: 15  VYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSG 73
           ++S  +T+  L+  +  A L  L L      N+   ++   + ++L ++DL  + VTD+G
Sbjct: 1   LFSTQVTDAGLQELKGLANLTSLGLSATKVTNEGLKEL--KELTNLTALDLFSTGVTDTG 58

Query: 74  LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR------------------- 114
           L  LK  +NL SL+     Q++  GL+ L+GL+NLTSL+                     
Sbjct: 59  LQELKGLTNLTSLNLGVT-QVTGAGLQELKGLTNLTSLNLGSTGVTDAGLQDLKGLNKLA 117

Query: 115 ----RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
               R   +T  G++   GL +L +L L      + GL  LKGL  L SL+++    +TD
Sbjct: 118 SLDLRGTEVTDVGLQELKGLNSLTELRLRATEVTNVGLQELKGLNNLASLDLRDTR-VTD 176

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
             ++ L GL NL SL +  +KVTD+G+  LKGL  LT L+L    VT   L  L+ L  L
Sbjct: 177 VGLQELKGLNNLASLDLRDTKVTDTGLKELKGLTNLTALDLFSTQVTDVGLKELNGLTKL 236

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
             L+L+R  ++  G  +      L +L+L    +TD  L  LKGLT+L SL+L    + D
Sbjct: 237 ASLDLSRTGVTGTGLIELKSFTKLALLDLSGTRVTDAGLHQLKGLTSLTSLHLGGTRVTD 296

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
            GL  L GL +L  L LS T+   +GL+ L+GLTNL S++LS T ++D  L++L   + L
Sbjct: 297 VGLKELKGLTSLTSLHLSGTRTTDAGLQELNGLTNLTSLHLSDTRVTDVGLKELKSFTKL 356

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
            SL+L    +TDTGL  L  LT LT LDLF  ++TD G   L     L SL +    +TD
Sbjct: 357 TSLHLGGTGVTDTGLKELKGLTNLTALDLFSTQVTDVGLQELNGLTKLTSLYLSAAAITD 416

Query: 411 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
            G+K +K+L+ L LL+LS    +TD  L+ +SGLT L  L +  +R+T AGL+ L 
Sbjct: 417 TGLKELKELTQLALLDLS-GTRVTDAGLQELSGLTKLAFLRLGGTRVTDAGLKELK 471



 Score =  224 bits (572), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 168/410 (40%), Positives = 229/410 (55%), Gaps = 8/410 (1%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L S+DL G++VTD GL  LK  ++L  L      ++++ GL+ L+GL+NL SL  R +  
Sbjct: 116 LASLDLRGTEVTDVGLQELKGLNSLTELRLR-ATEVTNVGLQELKGLNNLASLDLR-DTR 173

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           +T  G++   GL NL  LDL        GL  LKGL  L +L++ +   +TD  +K L+G
Sbjct: 174 VTDVGLQELKGLNNLASLDLRDTKVTDTGLKELKGLTNLTALDL-FSTQVTDVGLKELNG 232

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           LT L SL +S + VT +G+  LK   KL LL+L G  VT A L  L  L SL  L+L   
Sbjct: 233 LTKLASLDLSRTGVTGTGLIELKSFTKLALLDLSGTRVTDAGLHQLKGLTSLTSLHLGGT 292

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
           +++D G ++   + SL  L+L     TD  L  L GLTNL SL+L    + D GL  L  
Sbjct: 293 RVTDVGLKELKGLTSLTSLHLSGTRTTDAGLQELNGLTNLTSLHLSDTRVTDVGLKELKS 352

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
              L  L L  T V  +GL+ L GLTNL +++L  T ++D  L++L GL+ L SL L A 
Sbjct: 353 FTKLTSLHLGGTGVTDTGLKELKGLTNLTALDLFSTQVTDVGLQELNGLTKLTSLYLSAA 412

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
            ITDTGL  L  LT L  LDL G R+TD+G   L     L  L + G  +TDAG+K +K 
Sbjct: 413 AITDTGLKELKELTQLALLDLSGTRVTDAGLQELSGLTKLAFLRLGGTRVTDAGLKELKG 472

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS----NSRITSAGLRH 464
           L+SLT L+LS    +TD  L+ +SGLT L +        + R TS   RH
Sbjct: 473 LTSLTSLHLS-GTRVTDAGLQELSGLTNLTTTGPPRYEGDERGTSGVPRH 521


>gi|303286333|ref|XP_003062456.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455973|gb|EEH53275.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 519

 Score =  235 bits (599), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 163/484 (33%), Positives = 254/484 (52%), Gaps = 24/484 (4%)

Query: 2   LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
           LP D++Q++F+ L  +  LT  +L  F  C L D        V D ++  +    +SL  
Sbjct: 1   LPPDLAQRVFDVLARANELTVDALGRFEGCFLSDASGLDANVVTDAFLAALRDVATSLSR 60

Query: 62  VDLSGSDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
           +DL+G D   SG +      C+ +  ++ + C  + D  L  +   ++L S     N+A+
Sbjct: 61  IDLTGCDALTSGGLRSNFPCCARMTIVNVSECAGVDDDALAAMASATHLKSFFCEGNDAV 120

Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM------ 173
           T  G++  A L +L +L  ERC R+  G+ +L GL  L SLN+ WC  ++  +       
Sbjct: 121 TGSGVRHLASLTSLRELSFERCARLREGMCHLAGLRNLRSLNLGWCGKLSAKETSRALTP 180

Query: 174 -------KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
                   P S    L   +   +  T   +  L G  +L  LN+ GC +    L  L  
Sbjct: 181 FFPASASAPRSTPIELSLARTGANADTARALGQLAG--RLVALNVSGCAMNDDALHFLGG 238

Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
           L +L  L+L RC++SD G  +   +  L+ LNLG+  +T++ ++ L  LT L  +NLDS 
Sbjct: 239 LINLRSLSLERCRVSDVGVRQLCGLRDLRELNLGYTRVTNDGVLALAPLTELRVVNLDSL 298

Query: 287 G-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
           G +GD G+        L+ L +SDT VG  G+R L     L  +NL +T ++D  L  L 
Sbjct: 299 GDVGDAGMEVARRWEKLESLCVSDTGVGDGGVRKLKSCARLRDLNLGYTNVTDDGLEHLE 358

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK---NLRSLE 402
            ++SL++LNLD+R ITD G+  L +L  LT +DLFGA+I+D GA+ L  FK    L  LE
Sbjct: 359 DMTSLRNLNLDSRLITDDGVRHLANLGALTAIDLFGAKISDEGASRL--FKCTPKLERLE 416

Query: 403 ICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
           +CGG LT+ GVK I +    +  LN+ +N  +TD  ++ +  +  L SLN++ S+ITS G
Sbjct: 417 LCGGSLTNVGVKRIAEHCKGMKTLNIGRNAKITDDCVDDVVTMRELTSLNLAFSKITSDG 476

Query: 462 LRHL 465
           +R L
Sbjct: 477 VRKL 480



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 126/296 (42%), Gaps = 55/296 (18%)

Query: 43  GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
           G N      +      L+++++SG  + D  L  L    NL+SL    C ++SD G+  L
Sbjct: 202 GANADTARALGQLAGRLVALNVSGCAMNDDALHFLGGLINLRSLSLERC-RVSDVGVRQL 260

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINL--VKLD---------LERCTRIH------ 145
            GL +L  L+      +T  G+ A A L  L  V LD         +E   R        
Sbjct: 261 CGLRDLRELNLGYTR-VTNDGVLALAPLTELRVVNLDSLGDVGDAGMEVARRWEKLESLC 319

Query: 146 --------GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
                   GG+  LK   +L  LN+ + N +TD  ++ L  +T+L++L +    +TD G+
Sbjct: 320 VSDTGVGDGGVRKLKSCARLRDLNLGYTN-VTDDGLEHLEDMTSLRNLNLDSRLITDDGV 378

Query: 198 AYLKGLQKLTLLNLEGCPVTAA-----------------CLDSLSALG---------SLF 231
            +L  L  LT ++L G  ++                   C  SL+ +G          + 
Sbjct: 379 RHLANLGALTAIDLFGAKISDEGASRLFKCTPKLERLELCGGSLTNVGVKRIAEHCKGMK 438

Query: 232 YLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
            LN+ R  +++DD  +    +  L  LNL F++IT + +  L  L  L SL +  C
Sbjct: 439 TLNIGRNAKITDDCVDDVVTMRELTSLNLAFSKITSDGVRKLAALPCLTSLAIKGC 494


>gi|147821391|emb|CAN67937.1| hypothetical protein VITISV_014237 [Vitis vinifera]
          Length = 216

 Score =  228 bits (581), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 114/178 (64%), Positives = 138/178 (77%), Gaps = 17/178 (9%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRDISQQIF+  V S CLT  SLEAFRDCA+QD+ LG+YP VND WMD+I+SQG SLL
Sbjct: 47  MLPRDISQQIFDNFVDSHCLTSASLEAFRDCAIQDVNLGEYPEVNDSWMDIISSQGLSLL 106

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLSGS VTD GL  LKDCSN+Q L FN+C QIS+ GL+++ GLSNLTSLSF+++N +T
Sbjct: 107 SVDLSGSSVTDDGLSLLKDCSNIQVLSFNYCDQISEPGLKNISGLSNLTSLSFKKSNTVT 166

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           A+GM+AF+ L+NL KLDLERC+RIHGGL++LK                 DSD+K LSG
Sbjct: 167 AEGMRAFSSLVNLAKLDLERCSRIHGGLIHLK-----------------DSDLKALSG 207



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 66/124 (53%), Gaps = 5/124 (4%)

Query: 349 SLKSLNL-DARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNLR--SLEIC 404
           +++ +NL +  ++ D+ +  ++S    L  +DL G+ +TD G + L++  N++  S   C
Sbjct: 78  AIQDVNLGEYPEVNDSWMDIISSQGLSLLSVDLSGSSVTDDGLSLLKDCSNIQVLSFNYC 137

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
              +++ G+K+I  LS+LT L+  ++  +T + +   S L  L  L++        GL H
Sbjct: 138 -DQISEPGLKNISGLSNLTSLSFKKSNTVTAEGMRAFSSLVNLAKLDLERCSRIHGGLIH 196

Query: 465 LNHA 468
           L  +
Sbjct: 197 LKDS 200



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 8/99 (8%)

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           + I++QG+       +L+ +DL   +    GL  LK    ++ L+  +C+ I++  +K +
Sbjct: 96  DIISSQGL-------SLLSVDLSGSSVTDDGLSLLKDCSNIQVLSFNYCDQISEPGLKNI 148

Query: 177 SGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGC 214
           SGL+NL SL    S  VT  G+     L  L  L+LE C
Sbjct: 149 SGLSNLTSLSFKKSNTVTAEGMRAFSSLVNLAKLDLERC 187


>gi|219122964|ref|XP_002181805.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407081|gb|EEC47019.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 486

 Score =  224 bits (572), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 159/479 (33%), Positives = 255/479 (53%), Gaps = 20/479 (4%)

Query: 2   LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
           LP+D+   I   L+    L   +L   R+C L  L L    GV D+W++ ++++ S    
Sbjct: 1   LPQDVVDDILQSLIRHSALNATTLRILRNCELGVLSLSGCRGVTDEWLEALSAESSD--- 57

Query: 62  VDLSGSDVTDSGLIHLKDCS----NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
              S   +  + + H    S    N   LD     +++D GL  L  L  L        +
Sbjct: 58  ---SPPHLRTALMWHPCAASSALTNTTLLDLRGSQRLTDRGLMQLHDLGRLEVAKLDNCH 114

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           ++  +G+   +    L  L L  C R+    +VN+  L  L++L++  C CITD  +  L
Sbjct: 115 SVVGRGLVVLSSSPRLHTLSLTNCRRLTDEAIVNISHLQSLQALSLDGCRCITDFSLAAL 174

Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSAL----GSL 230
           + + NL+ L +S C  +T+ G+  L+ LQ+L  ++L  C  V+ A + +L+A      +L
Sbjct: 175 ADMYNLRKLGLSQCDLITNEGLKALEHLQRLQEISLGWCRQVSDAGIQTLTAQPGRSSNL 234

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
             L L RC ++D+G +   KI ++K L L ++ + D  L  L  L  LE LNLDSC IGD
Sbjct: 235 QILRLARCPITDEGVQYLGKIRNVKTLELCYSAVKDIHLTKLVNLPMLEELNLDSCPIGD 294

Query: 291 ---EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
              +   N   L NL  L+L+D+ +   G+  ++  T L+ ++L +  IS+  LR L+ L
Sbjct: 295 LAIQHFANHNVLPNLVSLDLADSDISDLGMVQIAKFTKLKRLSLFYCSISNRGLRHLSIL 354

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
           + L+ LNLD+R I+D GL  L  L  L  LD+F  R+TD G  YL   K L SLE+CGGG
Sbjct: 355 TELRVLNLDSRDISDDGLRHLQHLKQLKSLDIFSGRVTDLGCTYLSKIKTLESLELCGGG 414

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
           + DAG   +  L +LT LNLSQN  +T++    ++ L+ L +LN+S++R+ ++ LR+ +
Sbjct: 415 VRDAGCASLAKLENLTSLNLSQNERITNRGAAALAALSKLKALNLSHTRVNASALRYFS 473



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 179/404 (44%), Gaps = 62/404 (15%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
           L++C  L  L  + C  ++D  LE L   S+ +    R   A+      A + L N   L
Sbjct: 27  LRNC-ELGVLSLSGCRGVTDEWLEALSAESSDSPPHLR--TALMWHPCAASSALTNTTLL 83

Query: 137 DLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD 194
           DL    R+   GL+ L  L +LE   +  C+ +    +  LS    L +L ++ C ++TD
Sbjct: 84  DLRGSQRLTDRGLMQLHDLGRLEVAKLDNCHSVVGRGLVVLSSSPRLHTLSLTNCRRLTD 143

Query: 195 SGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
             I  +  LQ L  L+L+GC  +T   L +L+ + +L  L L++C L             
Sbjct: 144 EAIVNISHLQSLQALSLDGCRCITDFSLAALADMYNLRKLGLSQCDL------------- 190

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL----CNLKCLELS 308
                     IT+E L  L+ L  L+ ++L  C  + D G+  LT       NL+ L L+
Sbjct: 191 ----------ITNEGLKALEHLQRLQEISLGWCRQVSDAGIQTLTAQPGRSSNLQILRLA 240

Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
              +   G+++L  + N++++ L ++ + D  L KL  L  L+ LNLD+  I D  +   
Sbjct: 241 RCPITDEGVQYLGKIRNVKTLELCYSAVKDIHLTKLVNLPMLEELNLDSCPIGDLAIQHF 300

Query: 369 TS---LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
            +   L  L  LDL  + I+D G   +  F  L+ L +    +++ G++H+         
Sbjct: 301 ANHNVLPNLVSLDLADSDISDLGMVQIAKFTKLKRLSLFYCSISNRGLRHL--------- 351

Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
                           S LT L  LN+ +  I+  GLRHL H +
Sbjct: 352 ----------------SILTELRVLNLDSRDISDDGLRHLQHLK 379



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 133/295 (45%), Gaps = 34/295 (11%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL----SNLTSLSFRRNNAITAQGM 124
           +T+ GL  L+    LQ +   +C Q+SD G++ L       SNL  L   R   IT +G+
Sbjct: 191 ITNEGLKALEHLQRLQEISLGWCRQVSDAGIQTLTAQPGRSSNLQILRLARC-PITDEGV 249

Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG---LTN 181
           +    + N+  L+L         L  L  L  LE LN+  C  I D  ++  +    L N
Sbjct: 250 QYLGKIRNVKTLELCYSAVKDIHLTKLVNLPMLEELNLDSCP-IGDLAIQHFANHNVLPN 308

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
           L SL ++ S ++D G+  +    KL  L+L  C ++   L  LS L  L  LNL+   +S
Sbjct: 309 LVSLDLADSDISDLGMVQIAKFTKLKRLSLFYCSISNRGLRHLSILTELRVLNLDSRDIS 368

Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
           DDG      +  LK L++    +TD    +L  +  LESL L   G+ D G  +L  L N
Sbjct: 369 DDGLRHLQHLKQLKSLDIFSGRVTDLGCTYLSKIKTLESLELCGGGVRDAGCASLAKLEN 428

Query: 302 LKCLELSD-------------------------TQVGSSGLRHLSGLTNLESINL 331
           L  L LS                          T+V +S LR+ SGL NL+S+ L
Sbjct: 429 LTSLNLSQNERITNRGAAALAALSKLKALNLSHTRVNASALRYFSGLMNLQSLAL 483



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 128/262 (48%), Gaps = 9/262 (3%)

Query: 29  RDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF 88
           R   LQ L L + P + D+ +  +  +  ++ +++L  S V D  L  L +   L+ L+ 
Sbjct: 230 RSSNLQILRLARCP-ITDEGVQYLG-KIRNVKTLELCYSAVKDIHLTKLVNLPMLEELNL 287

Query: 89  NFCIQISDGGLEHLRG---LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
           + C  I D  ++H      L NL SL    ++ I+  GM   A    L +L L  C+  +
Sbjct: 288 DSC-PIGDLAIQHFANHNVLPNLVSLDLA-DSDISDLGMVQIAKFTKLKRLSLFYCSISN 345

Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
            GL +L  L +L  LN+   + I+D  ++ L  L  LKSL I   +VTD G  YL  ++ 
Sbjct: 346 RGLRHLSILTELRVLNLDSRD-ISDDGLRHLQHLKQLKSLDIFSGRVTDLGCTYLSKIKT 404

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEI 264
           L  L L G  V  A   SL+ L +L  LNL++ + +++ G    + +  LK LNL    +
Sbjct: 405 LESLELCGGGVRDAGCASLAKLENLTSLNLSQNERITNRGAAALAALSKLKALNLSHTRV 464

Query: 265 TDECLVHLKGLTNLESLNLDSC 286
               L +  GL NL+SL L  C
Sbjct: 465 NASALRYFSGLMNLQSLALYGC 486


>gi|307107435|gb|EFN55678.1| hypothetical protein CHLNCDRAFT_133919 [Chlorella variabilis]
          Length = 553

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 158/400 (39%), Positives = 228/400 (57%), Gaps = 27/400 (6%)

Query: 36  LCLGQYPG-VNDKWMDVIASQGSSLLSVDLSGSDVT--DSGLIHLKDCSNLQSLDFNFCI 92
           L LG YP  V   W+  +++   SL + DLS ++ +  D  L  L    +L  L  ++C+
Sbjct: 75  LPLGAYPERVQPSWLRCLST--PSLEAADLSKTEASGMDEVLASLGPTPHLAQLCLDYCV 132

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
            ++DGGL  L+G+++L  LS      +TA GM    GL  L +L L+ C +I   L  L 
Sbjct: 133 DLTDGGLALLQGMTSLEELSLAGCELLTAVGMGHLRGLTRLRRLSLQTCHQI--SLAPLA 190

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
            L +LE L++ WC+ + DSD                 ++VTD G+A L  L +L  LNL 
Sbjct: 191 QLRQLEQLDVGWCSSLDDSD-----------------AQVTDHGLACLHSLGQLRALNLA 233

Query: 213 GCPVTAACLDSL-SALGSLFYLNLNRC-QLSDDGCEKFSKIG-SLKVLNLGFNEITDECL 269
           G  V+   L +L   L  L  LNL RC Q  D      S+    L+ L+LG+  ++D  L
Sbjct: 234 GVRVSDEALAALLRHLPHLRALNLERCLQAGDASLAAVSQRALQLRELHLGYTAVSDRGL 293

Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
           + L GLT L  L+L++C +GD GL  L+ L  ++ L+LSDT   +  +  ++ +  LE +
Sbjct: 294 LLLGGLTQLHVLSLENCSVGDGGLAVLSHLTQMRQLDLSDTSASNETMSTVAAMRQLECL 353

Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
           NLSFTG++D  L++L  LSSL+ LNLD+R  TD G+ ++  L GL  LDLFGARI D+G 
Sbjct: 354 NLSFTGVNDLGLKRLRRLSSLRCLNLDSRHFTDAGMVSVAQLAGLECLDLFGARIGDAGC 413

Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 429
           A L   KNLR LE+CGGG+TDAGV H+  L+ L  L+L+Q
Sbjct: 414 ASLSKLKNLRRLEVCGGGVTDAGVAHLVALTRLQHLSLAQ 453



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 109/240 (45%), Gaps = 39/240 (16%)

Query: 263 EITDECLVHLKGLTNLESLNLDSC------GIGDEGL--------------VNLTGLCNL 302
           ++TD  L  L+G+T+LE L+L  C      G+G                  ++L  L  L
Sbjct: 133 DLTDGGLALLQGMTSLEELSLAGCELLTAVGMGHLRGLTRLRRLSLQTCHQISLAPLAQL 192

Query: 303 KCLEL-----------SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL-AGLSSL 350
           + LE            SD QV   GL  L  L  L ++NL+   +SD +L  L   L  L
Sbjct: 193 RQLEQLDVGWCSSLDDSDAQVTDHGLACLHSLGQLRALNLAGVRVSDEALAALLRHLPHL 252

Query: 351 KSLNLD-ARQITDTGLAALTSLT-GLTHLDLFGARITDSGAAYLRNFKNLR--SLEICGG 406
           ++LNL+   Q  D  LAA++     L  L L    ++D G   L     L   SLE C  
Sbjct: 253 RALNLERCLQAGDASLAAVSQRALQLRELHLGYTAVSDRGLLLLGGLTQLHVLSLENCSV 312

Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
           G  D G+  +  L+ +  L+LS + + +++T+  ++ +  L  LN+S + +   GL+ L 
Sbjct: 313 G--DGGLAVLSHLTQMRQLDLS-DTSASNETMSTVAAMRQLECLNLSFTGVNDLGLKRLR 369



 Score = 45.1 bits (105), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 113/235 (48%), Gaps = 28/235 (11%)

Query: 253 SLKVLNLGFNEIT--DECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD 309
           SL+  +L   E +  DE L  L    +L  L LD C  + D GL  L G+ +L+ L L+ 
Sbjct: 96  SLEAADLSKTEASGMDEVLASLGPTPHLAQLCLDYCVDLTDGGLALLQGMTSLEELSLAG 155

Query: 310 TQVGSS-GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL---------DARQ 359
            ++ ++ G+ HL          LS       SL  LA L  L+ L++         DA Q
Sbjct: 156 CELLTAVGMGHLR--GLTRLRRLSLQTCHQISLAPLAQLRQLEQLDVGWCSSLDDSDA-Q 212

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRNFKNLRSL--EICGGGLTDAGVKHI 416
           +TD GLA L SL  L  L+L G R++D   AA LR+  +LR+L  E C      AG   +
Sbjct: 213 VTDHGLACLHSLGQLRALNLAGVRVSDEALAALLRHLPHLRALNLERC----LQAGDASL 268

Query: 417 KDLSSLTL----LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNH 467
             +S   L    L+L     ++D+ L L+ GLT L  L++ N  +   GL  L+H
Sbjct: 269 AAVSQRALQLRELHLGYT-AVSDRGLLLLGGLTQLHVLSLENCSVGDGGLAVLSH 322


>gi|428173313|gb|EKX42216.1| hypothetical protein GUITHDRAFT_74106 [Guillardia theta CCMP2712]
          Length = 527

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 176/469 (37%), Positives = 271/469 (57%), Gaps = 9/469 (1%)

Query: 2   LPRDISQQIFNELVYSRCLTEVSLEAF-RDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           +P ++ Q +F+ L YSR L +  L    R C   D  L  YP + D W++V+     +L 
Sbjct: 42  IPNEMVQALFDSLAYSRRLEKSHLPLLSRIC---DASLFAYPLIADDWLEVLGESFHALT 98

Query: 61  SVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
            +D+S    VTD G+  L+   +L+S+    C+++ D  LE +  LS+L+ LS      +
Sbjct: 99  RLDMSNCIHVTDEGISRLRSLQSLRSIKLENCLRLGDATLEVIGELSSLSHLSVSACTRM 158

Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
            + G+   + L+ +  L+LER TR+   G+ +L+ L  L  LN+ W N   DS  + L  
Sbjct: 159 ASSGVSCLSQLVRMTDLNLERLTRLDSEGIESLEKLTNLRILNLGWTNADDDS-FESLRS 217

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-ACLDSLSALGSLFYLNLNR 237
           L  LK L +     T+ G+  L  L +L  L +  C V A + L  LS+LG L  L+L++
Sbjct: 218 LPRLKRLNVCACPFTEDGLQALCSLTQLESLRMCSCKVGATSALVELSSLGKLKLLDLSQ 277

Query: 238 CQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
           C+ + D   E    +  LK+L L    +TD  L +L  L +L++LNLD C + + GL  +
Sbjct: 278 CEHVGDQTLEALRGLSDLKILLLAHTRVTDIGLGYLSSLWDLKTLNLDCCHVTNGGLQTI 337

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
             L NL+ L+LSD  V SSGL  L+GLT L+S+NL  TG+SD  +  + GL++L  LNLD
Sbjct: 338 ANLTNLENLDLSDNVVTSSGLALLTGLTTLKSLNLFSTGVSDAGVIHVTGLTNLVRLNLD 397

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
           +R ITD+GLA ++ LT L  LDLFGA++T  G  Y+    +L SLE+CGGGLTD  ++ +
Sbjct: 398 SRLITDSGLACISGLTNLQELDLFGAKVTHHGTIYIGLLTSLTSLELCGGGLTDEAMREL 457

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           K L+ +  LN+SQN +L++ +   +S ++ L SLN++ +  +S G RHL
Sbjct: 458 KRLTRMRNLNVSQNESLSNGSFIPMSRMSLLTSLNIAGTNFSSDGARHL 506



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 105/209 (50%), Gaps = 6/209 (2%)

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRHL 320
            +TDE +  L+ L +L S+ L++C  +GD  L  +            + T++ SSG+  L
Sbjct: 107 HVTDEGISRLRSLQSLRSIKLENCLRLGDATLEVIGELSSLSHLSVSACTRMASSGVSCL 166

Query: 321 SGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
           S L  +  +NL   T +    +  L  L++L+ LNL      D    +L SL  L  L++
Sbjct: 167 SQLVRMTDLNLERLTRLDSEGIESLEKLTNLRILNLGWTNADDDSFESLRSLPRLKRLNV 226

Query: 380 FGARITDSGAAYLRNFKNLRSLEICG--GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
                T+ G   L +   L SL +C    G T A V+    L  L LL+LSQ  ++ D+T
Sbjct: 227 CACPFTEDGLQALCSLTQLESLRMCSCKVGATSALVELSS-LGKLKLLDLSQCEHVGDQT 285

Query: 438 LELISGLTGLVSLNVSNSRITSAGLRHLN 466
           LE + GL+ L  L ++++R+T  GL +L+
Sbjct: 286 LEALRGLSDLKILLLAHTRVTDIGLGYLS 314



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 108/231 (46%), Gaps = 28/231 (12%)

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
           L+ + VTD GL +L    +L++L+ + C  +++GGL+ +  L+NL +L    +N +T+ G
Sbjct: 300 LAHTRVTDIGLGYLSSLWDLKTLNLD-CCHVTNGGLQTIANLTNLENLDLS-DNVVTSSG 357

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
           +    GL  L  L+L        G++++ GL  L  LN+     ITDS +  +SGLTNL+
Sbjct: 358 LALLTGLTTLKSLNLFSTGVSDAGVIHVTGLTNLVRLNLD-SRLITDSGLACISGLTNLQ 416

Query: 184 SLQISCSKVTDSGIAY------------------------LKGLQKLTLLNL-EGCPVTA 218
            L +  +KVT  G  Y                        LK L ++  LN+ +   ++ 
Sbjct: 417 ELDLFGAKVTHHGTIYIGLLTSLTSLELCGGGLTDEAMRELKRLTRMRNLNVSQNESLSN 476

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
                +S +  L  LN+     S DG    +    L  L L F+ ++  CL
Sbjct: 477 GSFIPMSRMSLLTSLNIAGTNFSSDGARHLTIFTDLTSLCLRFDCLSRTCL 527



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 26/189 (13%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L ++DLS + VT SGL  L   + L+SL+  F   +SD G+ H+ GL+NL  L+   +
Sbjct: 341 TNLENLDLSDNVVTSSGLALLTGLTTLKSLNL-FSTGVSDAGVIHVTGLTNLVRLNLD-S 398

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLV------------------------NLK 152
             IT  G+   +GL NL +LDL      H G +                         LK
Sbjct: 399 RLITDSGLACISGLTNLQELDLFGAKVTHHGTIYIGLLTSLTSLELCGGGLTDEAMRELK 458

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
            L ++ +LN+     +++    P+S ++ L SL I+ +  +  G  +L     LT L L 
Sbjct: 459 RLTRMRNLNVSQNESLSNGSFIPMSRMSLLTSLNIAGTNFSSDGARHLTIFTDLTSLCLR 518

Query: 213 GCPVTAACL 221
              ++  CL
Sbjct: 519 FDCLSRTCL 527


>gi|147832652|emb|CAN74892.1| hypothetical protein VITISV_002002 [Vitis vinifera]
          Length = 300

 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 121/150 (80%), Positives = 135/150 (90%)

Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
           + GL NLESINLSFT ++D  LRK + LSSLKSLNLDA QITD GLAALTSLTGLTHLDL
Sbjct: 113 MEGLANLESINLSFTAVTDSGLRKSSALSSLKSLNLDAHQITDAGLAALTSLTGLTHLDL 172

Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
           FGARITDSG +YLRNFKNL+SLEICGGGLTDAGVK+IKDL+ LT+LNLSQNCNLTDK+LE
Sbjct: 173 FGARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLTVLNLSQNCNLTDKSLE 232

Query: 440 LISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           LISGLT LVSL+VSNSRIT+AGL+HL   +
Sbjct: 233 LISGLTALVSLSVSNSRITNAGLQHLKQLK 262



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 97/179 (54%), Gaps = 4/179 (2%)

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
           + +L+ +NL F  +TD  L     L++L+SLNLD+  I D GL  LT L  L  L+L   
Sbjct: 116 LANLESINLSFTAVTDSGLRKSSALSSLKSLNLDAHQITDAGLAALTSLTGLTHLDLFGA 175

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALT 369
           ++  SG  +L    NL+S+ +   G++D  ++ +  L+ L  LNL     +TD  L  ++
Sbjct: 176 RITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLTVLNLSQNCNLTDKSLELIS 235

Query: 370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
            LT L  L +  +RIT++G  +L+  KNL+SL +    +T   V  IK L S  L NL 
Sbjct: 236 GLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCKVT---VNDIKKLQSKDLPNLP 291



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 24/165 (14%)

Query: 148 LVNLKGLMKLESLNIKW-----------------------CNCITDSDMKPLSGLTNLKS 184
            VN++GL  LES+N+ +                        + ITD+ +  L+ LT L  
Sbjct: 110 FVNMEGLANLESINLSFTAVTDSGLRKSSALSSLKSLNLDAHQITDAGLAALTSLTGLTH 169

Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDD 243
           L +  +++TDSG +YL+  + L  L + G  +T A + ++  L  L  LNL++ C L+D 
Sbjct: 170 LDLFGARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLTVLNLSQNCNLTDK 229

Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
             E  S + +L  L++  + IT+  L HLK L NL+SL LDSC +
Sbjct: 230 SLELISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCKV 274



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 90/163 (55%), Gaps = 4/163 (2%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L S++LS + VTDSGL      S+L+SL+ +   QI+D GL  L  L+ LT L     
Sbjct: 117 ANLESINLSFTAVTDSGLRKSSALSSLKSLNLD-AHQITDAGLAALTSLTGLTHLDLF-G 174

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC-ITDSDMKP 175
             IT  G        NL  L++        G+ N+K L  L  LN+   NC +TD  ++ 
Sbjct: 175 ARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLTVLNLSQ-NCNLTDKSLEL 233

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
           +SGLT L SL +S S++T++G+ +LK L+ L  L L+ C VT 
Sbjct: 234 ISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCKVTV 276



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 121/253 (47%), Gaps = 24/253 (9%)

Query: 152 KGLMKLESLNIKWCNCI---TDSDMKPLSGLTNLKSLQ---------ISCSKVTDSGIAY 199
           +G + LE  NI W   +      D+  + GL +++ +          I   K+T S I +
Sbjct: 45  EGSLDLEKANI-WLGTLLLERSEDIYRMKGLLSVQGMDERFVFQDYLILFYKITTSLIPF 103

Query: 200 ---------LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
                    ++GL  L  +NL    VT + L   SAL SL  LNL+  Q++D G    + 
Sbjct: 104 FYTILLFVNMEGLANLESINLSFTAVTDSGLRKSSALSSLKSLNLDAHQITDAGLAALTS 163

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
           +  L  L+L    ITD    +L+   NL+SL +   G+ D G+ N+  L  L  L LS  
Sbjct: 164 LTGLTHLDLFGARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLTVLNLSQN 223

Query: 311 -QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369
             +    L  +SGLT L S+++S + I++  L+ L  L +LKSL LD+ ++T   +  L 
Sbjct: 224 CNLTDKSLELISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCKVTVNDIKKLQ 283

Query: 370 SLTGLTHLDLFGA 382
           S   L +L  F A
Sbjct: 284 S-KDLPNLPAFAA 295


>gi|302853080|ref|XP_002958057.1| hypothetical protein VOLCADRAFT_99233 [Volvox carteri f.
           nagariensis]
 gi|300256635|gb|EFJ40897.1| hypothetical protein VOLCADRAFT_99233 [Volvox carteri f.
           nagariensis]
          Length = 581

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 180/495 (36%), Positives = 263/495 (53%), Gaps = 42/495 (8%)

Query: 2   LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCL-GQYPGVNDKWMDVIASQGSSLL 60
           LP D+ Q++F+EL+ +   +   L  FR+  L  + L G+    ND+   +   + S L 
Sbjct: 41  LPADLVQRVFDELLAAGRFSLSDLTRFRELDLDTVVLVGRADVRNDRLRSL--EKCSRLR 98

Query: 61  SVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
           S+DL+G   V+D G+  L+    LQ L  + C+ ++D  L H+RGL+ L  L  R    I
Sbjct: 99  SLDLTGCVQVSDVGVASLRRHGGLQRLRLSHCVTLTDAALNHVRGLTGLQELELRECELI 158

Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
           T +G+   +GL  L  LDL++C RI GGL +L  L  L +L + WC  + DS++  L  L
Sbjct: 159 TGEGLMQLSGLTQLKTLDLDQCRRIKGGLQHLTSLRHLATLRLGWCPLLGDSEVTWLREL 218

Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC 238
             L+ L+++ ++VTD G+++L  L  LT L+L GC  +T A    L  L +L  L+L   
Sbjct: 219 GQLRELRLAYTQVTDVGVSHLAALTALTHLDLGGCTRLTDAAAAPLQRLTALQVLSLY-- 276

Query: 239 QLSDDGCEKFSKIGSLKVLNLG----------FNEITDECLVHLKGLTNLESLNLDSCGI 288
                GC +F   G   ++ +           +  +T   L  L  L+ L  L+LDSC +
Sbjct: 277 -----GCGQFGNAGLAMLIAVPLLSLNSLTLSYTAVTTPGLTALSSLSRLTLLSLDSCAV 331

Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS---GLTNLESINLSFTG---------- 335
           GD     L  L  L  L+LS+T VG  GL  L+     T+L  + L++T           
Sbjct: 332 GDAVCRVLRRLPRLANLDLSETSVGDGGLDALTVSGPPTSLTHLKLTYTKVNELGMPGKC 391

Query: 336 --ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA---- 389
             I+D  L KL+ L  L+ L+LD+  +TD  L  +T L+ LT LDLF  RITD+GA    
Sbjct: 392 VFITDEGLSKLSLLVGLQQLDLDSGTLTDACLRHVTGLSALTGLDLFSCRITDAGARLLG 451

Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLV 448
                  NLRSLE CGG LTDAG  H+  L+SLT LNLSQN  L D   + L + L+ L 
Sbjct: 452 GSGHLGGNLRSLECCGGLLTDAGAVHLARLTSLTCLNLSQNARLGDAGAQSLAASLSDLQ 511

Query: 449 SLNVSNSRITSAGLR 463
            L+++++ ITSA LR
Sbjct: 512 ELSLNHTNITSACLR 526



 Score = 45.4 bits (106), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 8/134 (5%)

Query: 344 LAGLSSLKSLNLDA------RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFK 396
           L+ L+  + L+LD         + +  L +L   + L  LDL G  +++D G A LR   
Sbjct: 61  LSDLTRFRELDLDTVVLVGRADVRNDRLRSLEKCSRLRSLDLTGCVQVSDVGVASLRRHG 120

Query: 397 NLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
            L+ L +     LTDA + H++ L+ L  L L +   +T + L  +SGLT L +L++   
Sbjct: 121 GLQRLRLSHCVTLTDAALNHVRGLTGLQELELRECELITGEGLMQLSGLTQLKTLDLDQC 180

Query: 456 RITSAGLRHLNHAR 469
           R    GL+HL   R
Sbjct: 181 RRIKGGLQHLTSLR 194



 Score = 38.9 bits (89), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 94/210 (44%), Gaps = 22/210 (10%)

Query: 59  LLSVDLSGSDVTDSGLIHLK---DCSNLQSLDFNF-----------CIQISDGGLEHLRG 104
           L ++DLS + V D GL  L      ++L  L   +           C+ I+D GL  L  
Sbjct: 345 LANLDLSETSVGDGGLDALTVSGPPTSLTHLKLTYTKVNELGMPGKCVFITDEGLSKLSL 404

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
           L  L  L    +  +T   ++   GL  L  LDL  C RI      L G       N++ 
Sbjct: 405 LVGLQQLDLD-SGTLTDACLRHVTGLSALTGLDLFSC-RITDAGARLLGGSGHLGGNLRS 462

Query: 165 CNC----ITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKG-LQKLTLLNLEGCPVTA 218
             C    +TD+    L+ LT+L  L +S  +++ D+G   L   L  L  L+L    +T+
Sbjct: 463 LECCGGLLTDAGAVHLARLTSLTCLNLSQNARLGDAGAQSLAASLSDLQELSLNHTNITS 522

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
           ACL  ++AL  L YL+++  +++D    K 
Sbjct: 523 ACLRDVAALPWLRYLSVSNTRVTDAAVAKL 552


>gi|46447560|ref|YP_008925.1| hypothetical protein pc1926 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401201|emb|CAF24650.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 761

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 155/409 (37%), Positives = 231/409 (56%), Gaps = 12/409 (2%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           +T++ L+ LKDC NL++L    C  ++D GLEHL  L+ L  L+  R   +T  G+    
Sbjct: 207 LTNAHLLALKDCKNLKALHLEACQALTDDGLEHLTLLTALQHLNLSRCKNLTDAGLAHLT 266

Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
            L  L  LDL  C +    GL  L+ L  L+ L+++ C+ ITD+ +  L+ L  L+ L +
Sbjct: 267 PLTGLQYLDLSHCNKFTDAGLAYLEILTALQHLDLRGCDKITDAGLSHLTPLVALQYLSL 326

Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
           S C  +TD+G+ +LK L  L  LNL  C  +T A L+ L+ L SL +LNL+ C +L+D G
Sbjct: 327 SQCWNLTDAGLIHLKPLTALQYLNLSRCNKLTDAGLEHLALLTSLQHLNLSSCKKLTDAG 386

Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 302
               + + +L+ L+L   N++TD  L HL  LT L+ LNL  C  I + GL +L  L  L
Sbjct: 387 LAHLTPLMALQHLDLSICNKLTDRGLTHLNPLTALQYLNLSQCDNITNAGLEHLIPLTAL 446

Query: 303 KCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQ 359
           + L LS   ++  +GL HL+ LT L+ ++LS+   ++D     L  L+ L+ L+L    +
Sbjct: 447 QYLNLSQCEKLTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAHLTPLTGLQYLDLSHCNK 506

Query: 360 ITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIK 417
           +TD GLA LT LT L +LDL    ++TD G A+L     L+ L +     LTDAG  H+ 
Sbjct: 507 LTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHLTPLMALQHLNLSSCYKLTDAGFAHLS 566

Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHL 465
            L++L  L+LS   NLTD  L  ++ LT L  L++     +T AGL HL
Sbjct: 567 PLTALQRLDLSYCQNLTDAELAHLTPLTALQRLDLRYCENLTDAGLVHL 615



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 172/476 (36%), Positives = 268/476 (56%), Gaps = 18/476 (3%)

Query: 4   RDISQQIFNELVYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSV 62
           + I +  F+  VY   LT   L A +DC  L+ L L     + D  ++ + +  ++L  +
Sbjct: 194 KKIERLNFSNQVY---LTNAHLLALKDCKNLKALHLEACQALTDDGLEHL-TLLTALQHL 249

Query: 63  DLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           +LS   ++TD+GL HL   + LQ LD + C + +D GL +L  L+ L  L  R  + IT 
Sbjct: 250 NLSRCKNLTDAGLAHLTPLTGLQYLDLSHCNKFTDAGLAYLEILTALQHLDLRGCDKITD 309

Query: 122 QGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
            G+     L+ L  L L +C  +   GL++LK L  L+ LN+  CN +TD+ ++ L+ LT
Sbjct: 310 AGLSHLTPLVALQYLSLSQCWNLTDAGLIHLKPLTALQYLNLSRCNKLTDAGLEHLALLT 369

Query: 181 NLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC 238
           +L+ L + SC K+TD+G+A+L  L  L  L+L  C  +T   L  L+ L +L YLNL++C
Sbjct: 370 SLQHLNLSSCKKLTDAGLAHLTPLMALQHLDLSICNKLTDRGLTHLNPLTALQYLNLSQC 429

Query: 239 -QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVN 295
             +++ G E    + +L+ LNL   E +TD  L HL  LT L+ L+L  C  + D G  +
Sbjct: 430 DNITNAGLEHLIPLTALQYLNLSQCEKLTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAH 489

Query: 296 LTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSL 353
           LT L  L+ L+LS   ++  +GL HL+ LT L+ ++LS    ++D  L  L  L +L+ L
Sbjct: 490 LTPLTGLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHLTPLMALQHL 549

Query: 354 NLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEI-CGGGLTD 410
           NL +  ++TD G A L+ LT L  LDL +   +TD+  A+L     L+ L++     LTD
Sbjct: 550 NLSSCYKLTDAGFAHLSPLTALQRLDLSYCQNLTDAELAHLTPLTALQRLDLRYCENLTD 609

Query: 411 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHL 465
           AG+ H+K L+ L  LNL     LTD  L  ++ L+GL  L++S+  ++T AGL HL
Sbjct: 610 AGLVHLKLLTDLQYLNLRGCGYLTDAGLAHLTTLSGLQHLDLSSCEKLTDAGLVHL 665



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 160/465 (34%), Positives = 246/465 (52%), Gaps = 62/465 (13%)

Query: 57  SSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
           ++L  +DL G D +TD+GL HL     LQ L  + C  ++D GL HL+ L+ L  L+  R
Sbjct: 294 TALQHLDLRGCDKITDAGLSHLTPLVALQYLSLSQCWNLTDAGLIHLKPLTALQYLNLSR 353

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
            N +T  G++  A L +L  L+L  C ++   GL +L  LM L+ L++  CN +TD  + 
Sbjct: 354 CNKLTDAGLEHLALLTSLQHLNLSSCKKLTDAGLAHLTPLMALQHLDLSICNKLTDRGLT 413

Query: 175 PLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFY 232
            L+ LT L+ L +S C  +T++G+ +L  L  L  LNL  C  +T A L+ L+ L +L  
Sbjct: 414 HLNPLTALQYLNLSQCDNITNAGLEHLIPLTALQYLNLSQCEKLTDAGLEHLTPLTALQQ 473

Query: 233 LNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIG 289
           L+L+ C +L+D G    + +  L+ L+L   N++TD  L HL  LT L+ L+L +C  + 
Sbjct: 474 LDLSWCYKLTDAGFAHLTPLTGLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLT 533

Query: 290 DEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGL 347
           D+GL +LT L  L+ L LS   ++  +G  HLS LT L+ ++LS+   ++D  L  L  L
Sbjct: 534 DDGLAHLTPLMALQHLNLSSCYKLTDAGFAHLSPLTALQRLDLSYCQNLTDAELAHLTPL 593

Query: 348 SSLKSLNL-------DAR-------------------QITDTGLAALTSLTGLTHLDLFG 381
           ++L+ L+L       DA                     +TD GLA LT+L+GL HLDL  
Sbjct: 594 TALQRLDLRYCENLTDAGLVHLKLLTDLQYLNLRGCGYLTDAGLAHLTTLSGLQHLDLSS 653

Query: 382 -ARITDSGAAYLRNFKNLRSLEI--CGG------------------------GLTDAGVK 414
             ++TD+G  +L+   +L+ L +  C                           LTDAG+ 
Sbjct: 654 CEKLTDAGLVHLKLLTDLQYLNLSRCENLTDEGLALLTPLTALQHLKLRYCINLTDAGLA 713

Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
           H+  L+ L  L+LSQ  NLTD  L  +  LT L  LN+S++ I+ 
Sbjct: 714 HLTPLTGLQRLDLSQCWNLTDAGLIHLKLLTALQHLNLSDTNISP 758


>gi|46446666|ref|YP_008031.1| hypothetical protein pc1032 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400307|emb|CAF23756.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 734

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 168/460 (36%), Positives = 249/460 (54%), Gaps = 13/460 (2%)

Query: 20  LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHL 77
           LT+  L   ++C  L+ L   +  GV D  +  + +  ++L  +DLS  + +TD GL HL
Sbjct: 237 LTDAHLLTLKNCKNLKILHFKKCWGVTDAGLAHL-TPLTTLQYLDLSDCEKLTDDGLAHL 295

Query: 78  KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
              + LQ LD ++C  ++D GL HL  L+ L  L+  R   +   G+     L  L  L+
Sbjct: 296 TPLTGLQHLDLSWCSSLTDAGLAHLTPLTALQHLNLNRCEYLKDAGLAHLTPLTGLQHLN 355

Query: 138 LERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDS 195
           L RC  +   GL +LK L  L+ LN+  C  +TD+ +  L+ LT L+ L +S C+ +TD+
Sbjct: 356 LNRCKDLTDAGLSHLKPLTALQHLNLSECWKLTDAGLAHLTPLTALQHLDLSRCNSLTDA 415

Query: 196 GIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGS 253
           G+A+L  L  L  L+L  C   T A L  L++L  L YLNL+  + L+D G    + + +
Sbjct: 416 GLAHLTPLTALQHLDLSDCQNFTDAGLAHLTSLTGLQYLNLSEYKNLTDAGLAHLTPLTA 475

Query: 254 LKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-T 310
           L+ LNL    + TD  L HL  LT L+ L+L  C  + D+GL +L  L  L+ L LS   
Sbjct: 476 LQHLNLCNCRKFTDNGLAHLTPLTALQHLDLSHCKNLTDDGLAHLAPLTGLQRLVLSWCD 535

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALT 369
           ++  +GL HL+ LT L+ ++LS   I+D  L  L  L+ L+ L L    Q+TD GLA LT
Sbjct: 536 KLTDAGLAHLTPLTALQYLDLSCCEITDAGLAHLTPLTGLQHLVLVYCWQLTDAGLAHLT 595

Query: 370 SLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
            LT L +L L    R+TD+G A+L     L+ L +     LTD G+ H+  L++L  L L
Sbjct: 596 PLTTLQYLYLGSCNRLTDAGLAHLAPLTALQHLALNDCRKLTDTGLAHLTPLTALQHLTL 655

Query: 428 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNH 467
           ++   LTD  L  +  L  L  L++S   IT AGL HL H
Sbjct: 656 NRCEKLTDDGLAHLKPLAALQYLDLSYCEITDAGLAHLTH 695



 Score =  187 bits (475), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 147/396 (37%), Positives = 216/396 (54%), Gaps = 10/396 (2%)

Query: 71  DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
           D+GL HL   + LQ L+ N C  ++D GL HL+ L+ L  L+      +T  G+     L
Sbjct: 339 DAGLAHLTPLTGLQHLNLNRCKDLTDAGLSHLKPLTALQHLNLSECWKLTDAGLAHLTPL 398

Query: 131 INLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
             L  LDL RC  +   GL +L  L  L+ L++  C   TD+ +  L+ LT L+ L +S 
Sbjct: 399 TALQHLDLSRCNSLTDAGLAHLTPLTALQHLDLSDCQNFTDAGLAHLTSLTGLQYLNLSE 458

Query: 190 SK-VTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCE 246
            K +TD+G+A+L  L  L  LNL  C   T   L  L+ L +L +L+L+ C+ L+DDG  
Sbjct: 459 YKNLTDAGLAHLTPLTALQHLNLCNCRKFTDNGLAHLTPLTALQHLDLSHCKNLTDDGLA 518

Query: 247 KFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
             + +  L+ L L + +++TD  L HL  LT L+ L+L  C I D GL +LT L  L+ L
Sbjct: 519 HLAPLTGLQRLVLSWCDKLTDAGLAHLTPLTALQYLDLSCCEITDAGLAHLTPLTGLQHL 578

Query: 306 ELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL-DARQITD 362
            L    Q+  +GL HL+ LT L+ + L S   ++D  L  LA L++L+ L L D R++TD
Sbjct: 579 VLVYCWQLTDAGLAHLTPLTTLQYLYLGSCNRLTDAGLAHLAPLTALQHLALNDCRKLTD 638

Query: 363 TGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
           TGLA LT LT L HL L    ++TD G A+L+    L+ L++    +TDAG+ H+  L +
Sbjct: 639 TGLAHLTPLTALQHLTLNRCEKLTDDGLAHLKPLAALQYLDLSYCEITDAGLAHLTHLMA 698

Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
           L  L+L     +TD  LE    L    +L +   R 
Sbjct: 699 LQRLDLYGR-EITDDGLERFETLAASFNLEIRLDRF 733



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 135/371 (36%), Positives = 186/371 (50%), Gaps = 62/371 (16%)

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
           K+E+LN      +TD+ +  L    NLK L    C  VTD+G+A+L  L  L  L+L  C
Sbjct: 225 KIETLNFSENARLTDAHLLTLKNCKNLKILHFKKCWGVTDAGLAHLTPLTTLQYLDLSDC 284

Query: 215 ------------PVTA--------------ACLDSLSALGSLFYLNLNRCQ-LSDDGCEK 247
                       P+T               A L  L+ L +L +LNLNRC+ L D G   
Sbjct: 285 EKLTDDGLAHLTPLTGLQHLDLSWCSSLTDAGLAHLTPLTALQHLNLNRCEYLKDAGLAH 344

Query: 248 FSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-------------------- 286
            + +  L+ LNL    ++TD  L HLK LT L+ LNL  C                    
Sbjct: 345 LTPLTGLQHLNLNRCKDLTDAGLSHLKPLTALQHLNLSECWKLTDAGLAHLTPLTALQHL 404

Query: 287 ------GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FTGISD 338
                  + D GL +LT L  L+ L+LSD Q    +GL HL+ LT L+ +NLS +  ++D
Sbjct: 405 DLSRCNSLTDAGLAHLTPLTALQHLDLSDCQNFTDAGLAHLTSLTGLQYLNLSEYKNLTD 464

Query: 339 GSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFK 396
             L  L  L++L+ LNL + R+ TD GLA LT LT L HLDL   + +TD G A+L    
Sbjct: 465 AGLAHLTPLTALQHLNLCNCRKFTDNGLAHLTPLTALQHLDLSHCKNLTDDGLAHLAPLT 524

Query: 397 NLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN-VSN 454
            L+ L +     LTDAG+ H+  L++L  L+LS  C +TD  L  ++ LTGL  L  V  
Sbjct: 525 GLQRLVLSWCDKLTDAGLAHLTPLTALQYLDLS-CCEITDAGLAHLTPLTGLQHLVLVYC 583

Query: 455 SRITSAGLRHL 465
            ++T AGL HL
Sbjct: 584 WQLTDAGLAHL 594



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 85/228 (37%), Positives = 124/228 (54%), Gaps = 3/228 (1%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
            TD+GL HL   + LQ LD + C  ++D GL HL  L+ L  L     + +T  G+    
Sbjct: 487 FTDNGLAHLTPLTALQHLDLSHCKNLTDDGLAHLAPLTGLQRLVLSWCDKLTDAGLAHLT 546

Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI- 187
            L  L  LDL  C     GL +L  L  L+ L + +C  +TD+ +  L+ LT L+ L + 
Sbjct: 547 PLTALQYLDLSCCEITDAGLAHLTPLTGLQHLVLVYCWQLTDAGLAHLTPLTTLQYLYLG 606

Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGC 245
           SC+++TD+G+A+L  L  L  L L  C  +T   L  L+ L +L +L LNRC+ L+DDG 
Sbjct: 607 SCNRLTDAGLAHLAPLTALQHLALNDCRKLTDTGLAHLTPLTALQHLTLNRCEKLTDDGL 666

Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
                + +L+ L+L + EITD  L HL  L  L+ L+L    I D+GL
Sbjct: 667 AHLKPLAALQYLDLSYCEITDAGLAHLTHLMALQRLDLYGREITDDGL 714



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 105/214 (49%), Gaps = 32/214 (14%)

Query: 48  WMDVIASQG-------SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
           W D +   G       ++L  +DLS  ++TD+GL HL   + LQ L   +C Q++D GL 
Sbjct: 533 WCDKLTDAGLAHLTPLTALQYLDLSCCEITDAGLAHLTPLTGLQHLVLVYCWQLTDAGLA 592

Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
           HL  L+ L  L     N +T                          GL +L  L  L+ L
Sbjct: 593 HLTPLTTLQYLYLGSCNRLTD------------------------AGLAHLAPLTALQHL 628

Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
            +  C  +TD+ +  L+ LT L+ L ++ C K+TD G+A+LK L  L  L+L  C +T A
Sbjct: 629 ALNDCRKLTDTGLAHLTPLTALQHLTLNRCEKLTDDGLAHLKPLAALQYLDLSYCEITDA 688

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
            L  L+ L +L  L+L   +++DDG E+F  + +
Sbjct: 689 GLAHLTHLMALQRLDLYGREITDDGLERFETLAA 722



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 1/124 (0%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           +TD+GL HL   + LQ L  N C +++D GL HL  L+ L  L+  R   +T  G+    
Sbjct: 611 LTDAGLAHLAPLTALQHLALNDCRKLTDTGLAHLTPLTALQHLTLNRCEKLTDDGLAHLK 670

Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
            L  L  LDL  C     GL +L  LM L+ L++ +   ITD  ++    L    +L+I 
Sbjct: 671 PLAALQYLDLSYCEITDAGLAHLTHLMALQRLDL-YGREITDDGLERFETLAASFNLEIR 729

Query: 189 CSKV 192
             + 
Sbjct: 730 LDRF 733


>gi|46447549|ref|YP_008914.1| hypothetical protein pc1915 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401190|emb|CAF24639.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 683

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 158/411 (38%), Positives = 233/411 (56%), Gaps = 12/411 (2%)

Query: 67  SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
           + +TD+ L+ LK+C NL+ L    C  ++D GL HL  L+ L  L+      +T  G+  
Sbjct: 235 AHLTDAHLLVLKNCKNLKVLYLQGCRNLTDAGLAHLTPLTGLQHLNLSWCRNLTDAGLAH 294

Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
            A L  L  LDL  C  +   GL +L  L  L+ L+++ C  ITD+ +  L+ LT L++L
Sbjct: 295 LAPLTALQYLDLSHCRNLTDTGLAHLTPLTALQHLDLRVCKNITDAGLAHLAPLTALQNL 354

Query: 186 QIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSD 242
            +S C  +TD+G+AYL  L  L  LNL  C  +T A L  L  L +L  L L++C  L+D
Sbjct: 355 DLSDCGHLTDAGLAYLTPLTALQHLNLYFCFNLTDAGLVHLRPLTALQTLGLSQCWNLTD 414

Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC 300
            G    + + +L+ LNL    ++TD  L HL  LT L+ LNL  C  + D+GL +L  L 
Sbjct: 415 TGLAHLTPLTALQHLNLSRCYKLTDAGLAHLTPLTALQHLNLSYCENLTDDGLAHLAPLT 474

Query: 301 NLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA- 357
            L+ L LS   ++  +GL HL+ LT L+ +NLS    ++D  L +L  L++L+ L+L   
Sbjct: 475 ALQYLRLSQCWKLTDAGLAHLTPLTALQHLNLSRCYKLTDAGLARLTPLTALQHLDLKYC 534

Query: 358 RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKH 415
             +TD GLA LT L+GL HL L   + +TD+G A+L     L+ L +     LTD G+ H
Sbjct: 535 INLTDAGLARLTPLSGLQHLALTNCKYLTDAGLAHLTLLTALQYLALANCKNLTDVGLAH 594

Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHL 465
           +  L++L  L+LS+  +LTD  L  ++ LTGL  LN+S  R +T AGL HL
Sbjct: 595 LTPLTALQHLDLSECRHLTDAGLAHLTPLTGLQHLNLSWCRNLTDAGLAHL 645



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 153/398 (38%), Positives = 215/398 (54%), Gaps = 15/398 (3%)

Query: 68  DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           ++TD+GL HL   + LQ LD + C  ++D GL HL  L+ L  L  R    IT  G+   
Sbjct: 286 NLTDAGLAHLAPLTALQYLDLSHCRNLTDTGLAHLTPLTALQHLDLRVCKNITDAGLAHL 345

Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
           A L  L  LDL  C  +   GL  L  L  L+ LN+ +C  +TD+ +  L  LT L++L 
Sbjct: 346 APLTALQNLDLSDCGHLTDAGLAYLTPLTALQHLNLYFCFNLTDAGLVHLRPLTALQTLG 405

Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDD 243
           +S C  +TD+G+A+L  L  L  LNL  C  +T A L  L+ L +L +LNL+ C+ L+DD
Sbjct: 406 LSQCWNLTDTGLAHLTPLTALQHLNLSRCYKLTDAGLAHLTPLTALQHLNLSYCENLTDD 465

Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
           G    + + +L+ L L    ++TD  L HL  LT L+ LNL  C  + D GL  LT L  
Sbjct: 466 GLAHLAPLTALQYLRLSQCWKLTDAGLAHLTPLTALQHLNLSRCYKLTDAGLARLTPLTA 525

Query: 302 LKCLELSD----TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-D 356
           L+ L+L      T  G + L  LSGL +L   N  +  ++D  L  L  L++L+ L L +
Sbjct: 526 LQHLDLKYCINLTDAGLARLTPLSGLQHLALTNCKY--LTDAGLAHLTLLTALQYLALAN 583

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVK 414
            + +TD GLA LT LT L HLDL   R +TD+G A+L     L+ L +     LTDAG+ 
Sbjct: 584 CKNLTDVGLAHLTPLTALQHLDLSECRHLTDAGLAHLTPLTGLQHLNLSWCRNLTDAGLA 643

Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
           H+  LS L  L LSQ   LTD  L+    L   ++L +
Sbjct: 644 HLSPLSVLQHLALSQCSRLTDDGLDRFKTLATSLNLEI 681



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 57  SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
           ++L  +DLS    +TD+GL HL   + LQ L+ ++C  ++D GL HL  LS L  L+  +
Sbjct: 599 TALQHLDLSECRHLTDAGLAHLTPLTGLQHLNLSWCRNLTDAGLAHLSPLSVLQHLALSQ 658

Query: 116 NNAITAQGMKAFAGLINLVKLDLER 140
            + +T  G+  F  L   + L++ R
Sbjct: 659 CSRLTDDGLDRFKTLATSLNLEIVR 683


>gi|406836026|ref|ZP_11095620.1| leucine-rich repeat-containing protein [Schlesneria paludicola DSM
           18645]
          Length = 586

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 155/459 (33%), Positives = 238/459 (51%), Gaps = 23/459 (5%)

Query: 6   ISQQIFNELVYSRCLTEVSLE--AFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVD 63
           IS    ++L+  R LT + L   A  D AL+ L + +                 +L +++
Sbjct: 135 ISDAGLDKLLALRNLTAIDLSETAITDSALKPLSVLE-----------------NLSTIN 177

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
           LS + +  SGL  L    NL++L  +    I++  L  +  L NLT+L    N  I+A G
Sbjct: 178 LSTTKIDGSGLADLSGLKNLKTLVLSHS-PITNEALAGVAALRNLTTLELW-NTPISADG 235

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
           +K+   L +L KL+L   +    GL  L  L  L++LN+     +TD+ +  LS + NL 
Sbjct: 236 LKSLGTLTDLTKLNLGFTSLDDTGLAELATLTNLKALNLMQTG-VTDTGLSSLSQIKNLT 294

Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
           +L ++ +++TD+G+  +   + L  L+LEG  +T   L +L  LG L  L + +  ++D 
Sbjct: 295 NLNLNDTQITDAGMVAIARHKDLNELHLEGTRLTDVGLRALKTLGELDVLQIGKTAVTDA 354

Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
           G E+ +    LK+L LG  +++DE L  L GL +L+SL L   GI D G   L  L  L 
Sbjct: 355 GVEELAGFKHLKILRLGSTKVSDEGLKSLLGLEHLQSLGLGGTGITDVGAKQLASLTTLT 414

Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
            L+L  T V   G+R L GL+NLE ++L  T ISD  +  L     LK L L   QI+D 
Sbjct: 415 GLDLDATAVTDEGVRELGGLSNLEYLSLISTKISDDGVSGLGAFKKLKMLFLHNNQISDE 474

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
           GL  L  L+ LT L L   ++TD G   L+N K+L+ L +C   +TDAG+K +  LS L 
Sbjct: 475 GLKGLNDLSQLTTLYLSMTQVTDVGMKELKNLKHLKDLVLCDTQITDAGLKELTGLSELN 534

Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
           +L + +N  +TD  LE ++    L  L +   R + AGL
Sbjct: 535 VLVI-RNVAVTDACLEHLTSFKNLTHLCIDVHRFSEAGL 572



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 158/491 (32%), Positives = 235/491 (47%), Gaps = 73/491 (14%)

Query: 45  NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNF-------------- 90
           ND+++ +I+  G  L S+DLS + +TD GL  L+  + L SL+  +              
Sbjct: 64  NDRYVHLISPLGR-LESLDLSNTQITDLGLKELRKLNALTSLNLRYTAISDVGLSELSEM 122

Query: 91  ---------CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
                      QISD GL+ L  L NLT++      AIT   +K  + L NL  ++L   
Sbjct: 123 SKLDTLNLSATQISDAGLDKLLALRNLTAIDLSET-AITDSALKPLSVLENLSTINLS-T 180

Query: 142 TRIHG-GLVNLKGLMKLESLNIK-----------------------WCNCITDSDMKPLS 177
           T+I G GL +L GL  L++L +                        W   I+   +K L 
Sbjct: 181 TKIDGSGLADLSGLKNLKTLVLSHSPITNEALAGVAALRNLTTLELWNTPISADGLKSLG 240

Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
            LT+L  L +  + + D+G+A L  L  L  LNL    VT   L SLS + +L  LNLN 
Sbjct: 241 TLTDLTKLNLGFTSLDDTGLAELATLTNLKALNLMQTGVTDTGLSSLSQIKNLTNLNLND 300

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
            Q++D G    ++   L  L+L    +TD  L  LK L  L+ L +    + D G+  L 
Sbjct: 301 TQITDAGMVAIARHKDLNELHLEGTRLTDVGLRALKTLGELDVLQIGKTAVTDAGVEELA 360

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
           G  +LK L L  T+V   GL+ L GL +L+S+ L  TGI+D   ++LA L++L  L+LDA
Sbjct: 361 GFKHLKILRLGSTKVSDEGLKSLLGLEHLQSLGLGGTGITDVGAKQLASLTTLTGLDLDA 420

Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
             +TD G+  L  L+ L +L L   +I+D G + L  FK L+ L +    ++D G+K + 
Sbjct: 421 TAVTDEGVRELGGLSNLEYLSLISTKISDDGVSGLGAFKKLKMLFLHNNQISDEGLKGLN 480

Query: 418 DLSSLTLLNLSQ-----------------------NCNLTDKTLELISGLTGLVSLNVSN 454
           DLS LT L LS                        +  +TD  L+ ++GL+ L  L + N
Sbjct: 481 DLSQLTTLYLSMTQVTDVGMKELKNLKHLKDLVLCDTQITDAGLKELTGLSELNVLVIRN 540

Query: 455 SRITSAGLRHL 465
             +T A L HL
Sbjct: 541 VAVTDACLEHL 551



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 78/141 (55%), Gaps = 4/141 (2%)

Query: 329 INLSFTG---ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           + +SF G    +D  +  ++ L  L+SL+L   QITD GL  L  L  LT L+L    I+
Sbjct: 53  VGISFAGNARFNDRYVHLISPLGRLESLDLSNTQITDLGLKELRKLNALTSLNLRYTAIS 112

Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
           D G + L     L +L +    ++DAG+  +  L +LT ++LS+   +TD  L+ +S L 
Sbjct: 113 DVGLSELSEMSKLDTLNLSATQISDAGLDKLLALRNLTAIDLSETA-ITDSALKPLSVLE 171

Query: 446 GLVSLNVSNSRITSAGLRHLN 466
            L ++N+S ++I  +GL  L+
Sbjct: 172 NLSTINLSTTKIDGSGLADLS 192


>gi|46446659|ref|YP_008024.1| hypothetical protein pc1025 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400300|emb|CAF23749.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 695

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 157/405 (38%), Positives = 226/405 (55%), Gaps = 11/405 (2%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           +TD GL HL   + LQ L+ +    ++D GL HL  L+ L  L+  R N +T  G+    
Sbjct: 263 LTDDGLAHLTPLTALQYLNLSASYNLTDAGLVHLAPLTALQKLNLGRYNQLTDAGLAHLK 322

Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
            L  L +LDL  C  +   GL +L+ L  L+ L++++C  +TD  +  L  LT L+ L +
Sbjct: 323 PLTALQRLDLSFCEDLTDDGLAHLRPLTALQRLDLRYCEKLTDDGLVHLRPLTALQRLNL 382

Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGC 245
           S    T +G+++L  L  L  LNL  C  +T A L  L  L  L +LNL+ C +L+D G 
Sbjct: 383 SNCWHTGAGLSHLSPLTGLQHLNLYECINLTDAGLVHLKLLTGLQHLNLSYCDELTDAGL 442

Query: 246 EKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLK 303
                +  L+ LNL   N +TD  LVHLK LT L+ LNL  C  + D GLV+L  L  L+
Sbjct: 443 VHLKLLTGLQHLNLSNCNNLTDAGLVHLKFLTGLQHLNLSYCDELTDAGLVHLKLLTGLQ 502

Query: 304 CLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQI 360
            L LS+   +  +GL HL+ LT L+ ++LS+ + ++D  L  L  L++L+ LNL + R +
Sbjct: 503 HLNLSNCNNLTDAGLAHLTPLTGLQHLDLSYCSKLTDDGLAHLKPLTALQCLNLSNCRNL 562

Query: 361 TDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKD 418
           TD GL  L  LTGL HL+L   + +TD G  +L     LR LE+ G   LTDAG+ H+  
Sbjct: 563 TDAGLVHLKLLTGLQHLNLSDYKNLTDDGLIHLMPLMALRHLELLGCENLTDAGLVHLTP 622

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGL 462
           L++L  LNLS   +LTD  L  ++ LTGL  L +     +T AGL
Sbjct: 623 LTALQHLNLSHCDDLTDAGLAHLTSLTGLQHLELLGCENLTDAGL 667



 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 141/365 (38%), Positives = 203/365 (55%), Gaps = 10/365 (2%)

Query: 67  SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
           + +TD+GL HLK  + LQ LD +FC  ++D GL HLR L+ L  L  R    +T  G+  
Sbjct: 311 NQLTDAGLAHLKPLTALQRLDLSFCEDLTDDGLAHLRPLTALQRLDLRYCEKLTDDGLVH 370

Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
              L  L +L+L  C     GL +L  L  L+ LN+  C  +TD+ +  L  LT L+ L 
Sbjct: 371 LRPLTALQRLNLSNCWHTGAGLSHLSPLTGLQHLNLYECINLTDAGLVHLKLLTGLQHLN 430

Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
           +S C ++TD+G+ +LK L  L  LNL  C  +T A L  L  L  L +LNL+ C +L+D 
Sbjct: 431 LSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLVHLKFLTGLQHLNLSYCDELTDA 490

Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN 301
           G      +  L+ LNL   N +TD  L HL  LT L+ L+L  C  + D+GL +L  L  
Sbjct: 491 GLVHLKLLTGLQHLNLSNCNNLTDAGLAHLTPLTGLQHLDLSYCSKLTDDGLAHLKPLTA 550

Query: 302 LKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLN-LDAR 358
           L+CL LS+ + +  +GL HL  LT L+ +NLS +  ++D  L  L  L +L+ L  L   
Sbjct: 551 LQCLNLSNCRNLTDAGLVHLKLLTGLQHLNLSDYKNLTDDGLIHLMPLMALRHLELLGCE 610

Query: 359 QITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 416
            +TD GL  LT LT L HL+L     +TD+G A+L +   L+ LE+ G   LTDAG+   
Sbjct: 611 NLTDAGLVHLTPLTALQHLNLSHCDDLTDAGLAHLTSLTGLQHLELLGCENLTDAGLARF 670

Query: 417 KDLSS 421
           K +++
Sbjct: 671 KTVAN 675



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 128/320 (40%), Positives = 179/320 (55%), Gaps = 10/320 (3%)

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
           K+E LN      +TD+ +  L    NLK L +  C  +TD G+A+L  L  L  LNL   
Sbjct: 226 KIEGLNFSNNRYLTDAHLLILKNCKNLKVLHLEKCRALTDDGLAHLTPLTALQYLNLSAS 285

Query: 215 P-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVH 271
             +T A L  L+ L +L  LNL R  QL+D G      + +L+ L+L F E +TD+ L H
Sbjct: 286 YNLTDAGLVHLAPLTALQKLNLGRYNQLTDAGLAHLKPLTALQRLDLSFCEDLTDDGLAH 345

Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
           L+ LT L+ L+L  C  + D+GLV+L  L  L+ L LS+     +GL HLS LT L+ +N
Sbjct: 346 LRPLTALQRLDLRYCEKLTDDGLVHLRPLTALQRLNLSNCWHTGAGLSHLSPLTGLQHLN 405

Query: 331 L-SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITDS 387
           L     ++D  L  L  L+ L+ LNL    ++TD GL  L  LTGL HL+L     +TD+
Sbjct: 406 LYECINLTDAGLVHLKLLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDA 465

Query: 388 GAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
           G  +L+    L+ L +     LTDAG+ H+K L+ L  LNLS   NLTD  L  ++ LTG
Sbjct: 466 GLVHLKFLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLAHLTPLTG 525

Query: 447 LVSLNVSN-SRITSAGLRHL 465
           L  L++S  S++T  GL HL
Sbjct: 526 LQHLDLSYCSKLTDDGLAHL 545



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 8/112 (7%)

Query: 33  LQDLCLGQYPGVND----KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF 88
           LQ L L  Y  + D      M ++A +   LL  +    ++TD+GL+HL   + LQ L+ 
Sbjct: 576 LQHLNLSDYKNLTDDGLIHLMPLMALRHLELLGCE----NLTDAGLVHLTPLTALQHLNL 631

Query: 89  NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           + C  ++D GL HL  L+ L  L       +T  G+  F  + N + L ++R
Sbjct: 632 SHCDDLTDAGLAHLTSLTGLQHLELLGCENLTDAGLARFKTVANSLYLIIKR 683


>gi|46446831|ref|YP_008196.1| hypothetical protein pc1197 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400472|emb|CAF23921.1| hypothetical protein pc1197 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 666

 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 152/408 (37%), Positives = 230/408 (56%), Gaps = 11/408 (2%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           +TD+ L+ LK+C NL+ L F  C  I+D GL HL  L++L  L+  +   IT  G+    
Sbjct: 197 LTDAHLLALKNCKNLKILHFKNCRVITDAGLAHLTPLTSLQRLNLSKLWCITDAGLAHLT 256

Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
            L  L  LDL +C+++   GL +L  L  L+ L + +C  +TD+ +  L+ LT L+ L +
Sbjct: 257 TLKALQHLDLSQCSKLTDDGLAHLTPLTALQHLGLNYCENLTDAGLAHLTLLTGLQHLDL 316

Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
           S C  +TD+G+A+L  L  L  L+L  C  +T A L  L++L  L +L+L+ C+ L+D G
Sbjct: 317 SNCKNLTDAGLAHLTSLMALQHLDLSWCLKLTDAGLAHLTSLTGLQHLDLSNCKNLTDAG 376

Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
               + + +L+ LNL +  ++TD  L HL  LT L+ LNL    +   GL +LT L  L+
Sbjct: 377 LAHLTSLMALQHLNLSWCLKLTDAGLAHLTPLTALQHLNLSRYNLTYAGLAHLTSLTGLQ 436

Query: 304 CLELSDT-QVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQ-I 360
            L+LS + ++  +GL HL  L  L+ +NL+    ++D  L  L+ L +L++L L   Q +
Sbjct: 437 HLDLSGSRKLIDAGLAHLRPLVALQHLNLTGCWKLTDAGLAHLSPLKALQTLGLSWCQNL 496

Query: 361 TDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKD 418
           T  GLA L  L  L +LDL     +TD+G A+LR    L+ L + G   LTDAG+ H+  
Sbjct: 497 TGAGLAHLKPLVALQYLDLSNCNNLTDAGLAHLRPLVALQHLNLTGCWKLTDAGLAHLTS 556

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHL 465
           L +L  LNLS    LTD  L  +  L  L  L++SN + +T  GL HL
Sbjct: 557 LMALQHLNLSWCLKLTDAGLAHLKPLVALQHLDLSNCNNLTDEGLTHL 604



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 154/420 (36%), Positives = 227/420 (54%), Gaps = 38/420 (9%)

Query: 58  SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           +L  +DLS  S +TD GL HL   + LQ L  N+C  ++D GL HL  L+ L        
Sbjct: 260 ALQHLDLSQCSKLTDDGLAHLTPLTALQHLGLNYCENLTDAGLAHLTLLTGLQ------- 312

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
                              LDL  C  +   GL +L  LM L+ L++ WC  +TD+ +  
Sbjct: 313 ------------------HLDLSNCKNLTDAGLAHLTSLMALQHLDLSWCLKLTDAGLAH 354

Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYL 233
           L+ LT L+ L +S C  +TD+G+A+L  L  L  LNL  C  +T A L  L+ L +L +L
Sbjct: 355 LTSLTGLQHLDLSNCKNLTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLTPLTALQHL 414

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDE 291
           NL+R  L+  G    + +  L+ L+L G  ++ D  L HL+ L  L+ LNL  C  + D 
Sbjct: 415 NLSRYNLTYAGLAHLTSLTGLQHLDLSGSRKLIDAGLAHLRPLVALQHLNLTGCWKLTDA 474

Query: 292 GLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSS 349
           GL +L+ L  L+ L LS  Q +  +GL HL  L  L+ ++LS    ++D  L  L  L +
Sbjct: 475 GLAHLSPLKALQTLGLSWCQNLTGAGLAHLKPLVALQYLDLSNCNNLTDAGLAHLRPLVA 534

Query: 350 LKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-G 406
           L+ LNL    ++TD GLA LTSL  L HL+L +  ++TD+G A+L+    L+ L++    
Sbjct: 535 LQHLNLTGCWKLTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLKPLVALQHLDLSNCN 594

Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHL 465
            LTD G+ H++ L +L  LNLS+  NLTD  L  ++ LT L  L++S+   +T AGL H 
Sbjct: 595 NLTDEGLTHLRPLVALQHLNLSR-YNLTDDGLAHLTPLTTLQYLDLSSCYNLTDAGLAHF 653



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 112/324 (34%), Positives = 169/324 (52%), Gaps = 8/324 (2%)

Query: 58  SLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           +L  +DLS    +TD+GL HL   + LQ LD + C  ++D GL HL  L  L  L+    
Sbjct: 335 ALQHLDLSWCLKLTDAGLAHLTSLTGLQHLDLSNCKNLTDAGLAHLTSLMALQHLNLSWC 394

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             +T  G+     L  L  L+L R    + GL +L  L  L+ L++     + D+ +  L
Sbjct: 395 LKLTDAGLAHLTPLTALQHLNLSRYNLTYAGLAHLTSLTGLQHLDLSGSRKLIDAGLAHL 454

Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLN 234
             L  L+ L ++ C K+TD+G+A+L  L+ L  L L  C  +T A L  L  L +L YL+
Sbjct: 455 RPLVALQHLNLTGCWKLTDAGLAHLSPLKALQTLGLSWCQNLTGAGLAHLKPLVALQYLD 514

Query: 235 LNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDE 291
           L+ C  L+D G      + +L+ LNL G  ++TD  L HL  L  L+ LNL  C  + D 
Sbjct: 515 LSNCNNLTDAGLAHLRPLVALQHLNLTGCWKLTDAGLAHLTSLMALQHLNLSWCLKLTDA 574

Query: 292 GLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
           GL +L  L  L+ L+LS+   +   GL HL  L  L+ +NLS   ++D  L  L  L++L
Sbjct: 575 GLAHLKPLVALQHLDLSNCNNLTDEGLTHLRPLVALQHLNLSRYNLTDDGLAHLTPLTTL 634

Query: 351 KSLNLDA-RQITDTGLAALTSLTG 373
           + L+L +   +TD GLA   ++  
Sbjct: 635 QYLDLSSCYNLTDAGLAHFKTVAA 658



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 6/120 (5%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           +TD+GL HL     LQ L+ ++C++++D GL HL+ L  L  L     N +T +G+    
Sbjct: 546 LTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLKPLVALQHLDLSNCNNLTDEGLTHLR 605

Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
            L+ L  L+L R      GL +L  L  L+ L++  C  +TD      +GL + K++  S
Sbjct: 606 PLVALQHLNLSRYNLTDDGLAHLTPLTTLQYLDLSSCYNLTD------AGLAHFKTVAAS 659


>gi|348682865|gb|EGZ22681.1| hypothetical protein PHYSODRAFT_491927 [Phytophthora sojae]
          Length = 648

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 152/481 (31%), Positives = 237/481 (49%), Gaps = 26/481 (5%)

Query: 2   LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMD-VIASQGSSLL 60
           LP +++  +   L     L +   +A     L +  L    GV D W D V  +    L 
Sbjct: 142 LPPELAASVLQWLKRHYVLDKPQFQALAPFLLLEWSLADLQGVEDSWFDGVPQTTLQQLK 201

Query: 61  SVDLSGSDVTDSGLIHLKDC-----------SNLQSLDFNFCIQISDGGLEHLRGLSNLT 109
           S+D+SG        IHL                L +  F  C  ++   +E LR  + L 
Sbjct: 202 SIDVSGC-------IHLHQLGAEWGYATTKLPELLAASFQGCTGLTKESIEMLRFSTKLA 254

Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCI 168
           +L+      +  + +KA + L  L  L L  C ++   G+  L  + KLE L I  C  +
Sbjct: 255 ALNLSGCVNVDDKSLKALSELEQLTSLQLVGCRKLTDKGVKYLAKMAKLEKLRIARCRKL 314

Query: 169 TDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSA 226
           TD+ ++  + +   L+ L ++  ++++  + Y+  ++ L +L + GC  +    + SLS 
Sbjct: 315 TDAALEDFAMMFPKLRELDVANCRLSEKALQYIGQIKSLEVLVIRGCQDICDDGMSSLSG 374

Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
           L +L Y +   C        ++++   L+VL LG+    +     L+ LTNL  L L  C
Sbjct: 375 LANLKYFDARHCSKIHSIPTEWTQ---LEVLLLGYTAFAESDAAVLQYLTNLHELELRKC 431

Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLA 345
            I   G   ++ L +L+ LEL +T +  SGL  + +   +L+++N+S T ISD     LA
Sbjct: 432 RIMKRGFQFISRLTHLERLELGETALTDSGLLEICNSAKSLKALNISNTEISDNGAAGLA 491

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
            L  L+ L LD   IT+  LA L+ L  L  LDLFGA ITD+G  +L     L+ L ICG
Sbjct: 492 KLKELRILRLDTPGITNRALANLSFLARLERLDLFGANITDNGLMHLVPLHKLQELSICG 551

Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           G + D GV  I  L+SLT LNLSQN N+  K+L  +  LTGL  LN+SN+ I++  LRHL
Sbjct: 552 GNIGDRGVGLISKLTSLTSLNLSQNRNIRTKSLFYLRALTGLRCLNLSNTGISALSLRHL 611

Query: 466 N 466
           +
Sbjct: 612 S 612



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 108/389 (27%), Positives = 169/389 (43%), Gaps = 58/389 (14%)

Query: 20  LTEVSLEAFR-DCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
           LT+ S+E  R    L  L L     V+DK +  + S+   L S+ L G   +TD G+ +L
Sbjct: 239 LTKESIEMLRFSTKLAALNLSGCVNVDDKSLKAL-SELEQLTSLQLVGCRKLTDKGVKYL 297

Query: 78  KDCSNLQSLDFNFCIQISDGGLE-------------------------HLRGLSNLTSLS 112
              + L+ L    C +++D  LE                         ++  + +L  L 
Sbjct: 298 AKMAKLEKLRIARCRKLTDAALEDFAMMFPKLRELDVANCRLSEKALQYIGQIKSLEVLV 357

Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
            R    I   GM + +GL NL   D   C++IH          +LE L + +     +SD
Sbjct: 358 IRGCQDICDDGMSSLSGLANLKYFDARHCSKIHSIPTEW---TQLEVLLLGY-TAFAESD 413

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT-AACLDSLSALGSLF 231
              L  LTNL  L++   ++   G  ++  L  L  L L    +T +  L+  ++  SL 
Sbjct: 414 AAVLQYLTNLHELELRKCRIMKRGFQFISRLTHLERLELGETALTDSGLLEICNSAKSLK 473

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
            LN++  ++SD+G    +K+  L++L L    IT+  L +L  L  LE L+L    I D 
Sbjct: 474 ALNISNTEISDNGAAGLAKLKELRILRLDTPGITNRALANLSFLARLERLDLFGANITDN 533

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSG-------------------------LRHLSGLTNL 326
           GL++L  L  L+ L +    +G  G                         L +L  LT L
Sbjct: 534 GLMHLVPLHKLQELSICGGNIGDRGVGLISKLTSLTSLNLSQNRNIRTKSLFYLRALTGL 593

Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNL 355
             +NLS TGIS  SLR L+ L  L+SL++
Sbjct: 594 RCLNLSNTGISALSLRHLSSLKELQSLSV 622



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 168/352 (47%), Gaps = 24/352 (6%)

Query: 13  ELVYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTD 71
           +LV  R LT+  ++     A L+ L + +   + D  ++  A     L  +D++   +++
Sbjct: 282 QLVGCRKLTDKGVKYLAKMAKLEKLRIARCRKLTDAALEDFAMMFPKLRELDVANCRLSE 341

Query: 72  SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA---------- 121
             L ++    +L+ L    C  I D G+  L GL+NL     R  + I +          
Sbjct: 342 KALQYIGQIKSLEVLVIRGCQDICDDGMSSLSGLANLKYFDARHCSKIHSIPTEWTQLEV 401

Query: 122 --QGMKAFAG--------LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
              G  AFA         L NL +L+L +C  +  G   +  L  LE L +     +TDS
Sbjct: 402 LLLGYTAFAESDAAVLQYLTNLHELELRKCRIMKRGFQFISRLTHLERLELGE-TALTDS 460

Query: 172 DMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
            +  + +   +LK+L IS ++++D+G A L  L++L +L L+   +T   L +LS L  L
Sbjct: 461 GLLEICNSAKSLKALNISNTEISDNGAAGLAKLKELRILRLDTPGITNRALANLSFLARL 520

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL-DSCGIG 289
             L+L    ++D+G      +  L+ L++    I D  +  +  LT+L SLNL  +  I 
Sbjct: 521 ERLDLFGANITDNGLMHLVPLHKLQELSICGGNIGDRGVGLISKLTSLTSLNLSQNRNIR 580

Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
            + L  L  L  L+CL LS+T + +  LRHLS L  L+S+++    +S G +
Sbjct: 581 TKSLFYLRALTGLRCLNLSNTGISALSLRHLSSLKELQSLSVYGCSLSQGHI 632


>gi|46446377|ref|YP_007742.1| hypothetical protein pc0743 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400018|emb|CAF23467.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 765

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 166/467 (35%), Positives = 253/467 (54%), Gaps = 15/467 (3%)

Query: 13  ELVYSR--CLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDV 69
           EL +S+   LT+  L A ++C  L+ L L     + D  +  + +  ++L  +DLSG ++
Sbjct: 262 ELNFSKNAHLTDAHLLALKNCENLKVLNLQACHNLTDAGLAHL-TPLAALKHLDLSGCEL 320

Query: 70  TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
           TD GL+HL   + LQ LD + C   +D GL HL+ L  L  L+      +T  G+     
Sbjct: 321 TDDGLVHLTPLAALQHLDLSHCRNFTDAGLAHLKLLVALQHLNLSHCGKLTDAGLAHLKL 380

Query: 130 LINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
           L+ L  LDL  C      GL +LK L+ L+ LN+ +C  +TD+ +  L+ L  L+ L ++
Sbjct: 381 LVALQHLDLSHCRNFTDAGLAHLKLLVALQHLNLSYCGNLTDAGLAHLTPLMALQHLDLN 440

Query: 189 -CSKVTDSGIAYLKGLQKLTLLNLE-GCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGC 245
            C  +TD+G+ +L  L  L  LNL      T A L  L+ L +L +LNL+ C   +D G 
Sbjct: 441 GCHNLTDAGLTHLTSLVVLQYLNLSWNYNFTDAGLAHLTPLMALQHLNLSYCGNFTDAGL 500

Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKC 304
              + + +LK L+L   E+TD+ L HLK L  L+ LNL  CG + D+GL +L  L  L+ 
Sbjct: 501 AHLTSLAALKHLDLIGCELTDDGLAHLKLLVALQHLNLSYCGKLTDDGLAHLKLLVALQH 560

Query: 305 LELSD-TQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQIT 361
           L+LS   ++  +GL HL  L  L+ +NLS  G ++D  L  L  L++L+ L+L    ++T
Sbjct: 561 LDLSGCDKLTGAGLAHLKFLVALQHLNLSHCGKLTDDGLVNLTPLAALRHLDLSHCGKLT 620

Query: 362 DTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDL 419
             GLA L  L  L HL+L    ++TD+G   L     L+ L++   G LTDAG+ ++  L
Sbjct: 621 GAGLAHLKFLVALQHLNLSHCGKLTDAGLVNLSPLMALQHLDLSHCGNLTDAGLVNLSPL 680

Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHL 465
            +L  L+LS   NLTD  L  +  L  L  L++S+   +T  GL HL
Sbjct: 681 MALQHLDLSHCGNLTDDGLVNLKFLVALQHLDLSHCGNLTDDGLAHL 727



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 122/332 (36%), Positives = 181/332 (54%), Gaps = 10/332 (3%)

Query: 58  SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           +L  +DL+G  ++TD+GL HL     LQ L+ ++    +D GL HL  L  L  L+    
Sbjct: 433 ALQHLDLNGCHNLTDAGLTHLTSLVVLQYLNLSWNYNFTDAGLAHLTPLMALQHLNLSYC 492

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
              T  G+     L  L  LDL  C     GL +LK L+ L+ LN+ +C  +TD  +  L
Sbjct: 493 GNFTDAGLAHLTSLAALKHLDLIGCELTDDGLAHLKLLVALQHLNLSYCGKLTDDGLAHL 552

Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLN 234
             L  L+ L +S C K+T +G+A+LK L  L  LNL  C  +T   L +L+ L +L +L+
Sbjct: 553 KLLVALQHLDLSGCDKLTGAGLAHLKFLVALQHLNLSHCGKLTDDGLVNLTPLAALRHLD 612

Query: 235 LNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDE 291
           L+ C +L+  G      + +L+ LNL    ++TD  LV+L  L  L+ L+L  CG + D 
Sbjct: 613 LSHCGKLTGAGLAHLKFLVALQHLNLSHCGKLTDAGLVNLSPLMALQHLDLSHCGNLTDA 672

Query: 292 GLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSS 349
           GLVNL+ L  L+ L+LS    +   GL +L  L  L+ ++LS  G ++D  L  L+ L +
Sbjct: 673 GLVNLSPLMALQHLDLSHCGNLTDDGLVNLKFLVALQHLDLSHCGNLTDDGLAHLSPLIA 732

Query: 350 LKSLNLDAR-QITD-TGLAALTSLTGLTHLDL 379
           L+ L+      +TD +GLA LTSL  L HLDL
Sbjct: 733 LQHLDRSKYNNLTDGSGLAHLTSLVDLQHLDL 764



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/273 (37%), Positives = 156/273 (57%), Gaps = 9/273 (3%)

Query: 68  DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           + TD+GL HL   + L+ LD   C +++D GL HL+ L  L  L+      +T  G+   
Sbjct: 494 NFTDAGLAHLTSLAALKHLDLIGC-ELTDDGLAHLKLLVALQHLNLSYCGKLTDDGLAHL 552

Query: 128 AGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
             L+ L  LDL  C ++ G GL +LK L+ L+ LN+  C  +TD  +  L+ L  L+ L 
Sbjct: 553 KLLVALQHLDLSGCDKLTGAGLAHLKFLVALQHLNLSHCGKLTDDGLVNLTPLAALRHLD 612

Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
           +S C K+T +G+A+LK L  L  LNL  C  +T A L +LS L +L +L+L+ C  L+D 
Sbjct: 613 LSHCGKLTGAGLAHLKFLVALQHLNLSHCGKLTDAGLVNLSPLMALQHLDLSHCGNLTDA 672

Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN 301
           G    S + +L+ L+L     +TD+ LV+LK L  L+ L+L  CG + D+GL +L+ L  
Sbjct: 673 GLVNLSPLMALQHLDLSHCGNLTDDGLVNLKFLVALQHLDLSHCGNLTDDGLAHLSPLIA 732

Query: 302 LKCLELSDTQ--VGSSGLRHLSGLTNLESINLS 332
           L+ L+ S        SGL HL+ L +L+ ++LS
Sbjct: 733 LQHLDRSKYNNLTDGSGLAHLTSLVDLQHLDLS 765


>gi|46447653|ref|YP_009018.1| hypothetical protein pc2019 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401294|emb|CAF24743.1| hypothetical protein pc2019 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 959

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 158/437 (36%), Positives = 232/437 (53%), Gaps = 38/437 (8%)

Query: 67  SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
           +++TD GL +L+    LQ L+ N C + +D GL HL  L +LT L   + + IT  G+  
Sbjct: 352 NNLTDVGLAYLRPLITLQGLNLNSCKKFTDAGLAHLDSLIDLTQLGLAKCHNITDNGLAY 411

Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
              LI L  L+L  C ++   GLV+LK L+ L  LN+  C+ +TD+ +  L+ L  L+ L
Sbjct: 412 LRPLIALQGLNLNGCKKLTDAGLVHLKSLVTLTYLNLSQCDDLTDAGLAHLTPLVALQHL 471

Query: 186 QIS---------------------------CSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 217
            +S                           C K+TD G+A+LK L  L  LNL  C  +T
Sbjct: 472 DLSFCCYNITDAGLAHLTPLVALQNLDLSFCYKLTDDGLAHLKPLVALKQLNLWACSNLT 531

Query: 218 AACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGL 275
            A L  L+ L +L +L+L  C  L+DDG      + +L+ L+L G  ++TD  L HL  L
Sbjct: 532 GAGLAHLTPLIALKHLDLGFCYGLTDDGLAHLKPLVALQYLSLSGCKKLTDAGLAHLTSL 591

Query: 276 TNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF 333
             L+ LN+ SC  + D+GL +L  L  L+ L LS   ++   GL HL+ L NL  ++LS 
Sbjct: 592 ITLQQLNISSCANLTDDGLAHLKPLIALQQLNLSSCKKLTGVGLAHLTSLVNLTHLSLSE 651

Query: 334 TG-ISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAA 390
            G ++D  L  LA L +L+ L+L+    +TD GLA L +L  L  L L     +TD+G A
Sbjct: 652 CGNLTDAGLAHLAPLVALQQLDLNFCYNLTDAGLAHLITLVALQQLYLSACGNLTDAGLA 711

Query: 391 YLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449
           +L     L+ L + G   LT  G+ H+  L++LT L+LS   NLTD  L  ++ L  L  
Sbjct: 712 HLTPLVALQQLNLSGCKKLTGVGLAHLTSLATLTHLSLSACANLTDDGLAHLTTLVALTY 771

Query: 450 LNVSN-SRITSAGLRHL 465
           LN+S+ +  T AGL HL
Sbjct: 772 LNLSDCNNFTGAGLTHL 788



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 155/435 (35%), Positives = 231/435 (53%), Gaps = 37/435 (8%)

Query: 68  DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           ++TD+GL HL     LQ+LD +FC +++D GL HL+ L  L  L+    + +T  G+   
Sbjct: 479 NITDAGLAHLTPLVALQNLDLSFCYKLTDDGLAHLKPLVALKQLNLWACSNLTGAGLAHL 538

Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
             LI L  LDL  C  +   GL +LK L+ L+ L++  C  +TD+ +  L+ L  L+ L 
Sbjct: 539 TPLIALKHLDLGFCYGLTDDGLAHLKPLVALQYLSLSGCKKLTDAGLAHLTSLITLQQLN 598

Query: 187 I-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
           I SC+ +TD G+A+LK L  L  LNL  C  +T   L  L++L +L +L+L+ C  L+D 
Sbjct: 599 ISSCANLTDDGLAHLKPLIALQQLNLSSCKKLTGVGLAHLTSLVNLTHLSLSECGNLTDA 658

Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN 301
           G    + + +L+ L+L F   +TD  L HL  L  L+ L L +CG + D GL +LT L  
Sbjct: 659 GLAHLAPLVALQQLDLNFCYNLTDAGLAHLITLVALQQLYLSACGNLTDAGLAHLTPLVA 718

Query: 302 LKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD--- 356
           L+ L LS   ++   GL HL+ L  L  ++LS    ++D  L  L  L +L  LNL    
Sbjct: 719 LQQLNLSGCKKLTGVGLAHLTSLATLTHLSLSACANLTDDGLAHLTTLVALTYLNLSDCN 778

Query: 357 -----------------------ARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 392
                                   +++TD GLA L  L  L  L+L G  +ITD+G  +L
Sbjct: 779 NFTGAGLTHLKPLVALQYLSLSGCKKLTDAGLAYLKPLVALQQLNLRGCKKITDAGLTHL 838

Query: 393 RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
            +   L+ L + G   LTD G+ H+K L +LT L+L +   LTD  L  ++ L  L  LN
Sbjct: 839 MSLVALQCLSLSGCKKLTDDGLAHLKPLVALTHLSLGECVKLTDDGLAHLTPLLALTHLN 898

Query: 452 VSN-SRITSAGLRHL 465
           +S+ + +T AGL HL
Sbjct: 899 LSDCNNLTVAGLAHL 913



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 121/324 (37%), Positives = 173/324 (53%), Gaps = 9/324 (2%)

Query: 65  SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
           S +++TD GL HLK    LQ L+ + C +++  GL HL  L NLT LS      +T  G+
Sbjct: 601 SCANLTDDGLAHLKPLIALQQLNLSSCKKLTGVGLAHLTSLVNLTHLSLSECGNLTDAGL 660

Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
              A L+ L +LDL  C  +   GL +L  L+ L+ L +  C  +TD+ +  L+ L  L+
Sbjct: 661 AHLAPLVALQQLDLNFCYNLTDAGLAHLITLVALQQLYLSACGNLTDAGLAHLTPLVALQ 720

Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QL 240
            L +S C K+T  G+A+L  L  LT L+L  C  +T   L  L+ L +L YLNL+ C   
Sbjct: 721 QLNLSGCKKLTGVGLAHLTSLATLTHLSLSACANLTDDGLAHLTTLVALTYLNLSDCNNF 780

Query: 241 SDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
           +  G      + +L+ L+L G  ++TD  L +LK L  L+ LNL  C  I D GL +L  
Sbjct: 781 TGAGLTHLKPLVALQYLSLSGCKKLTDAGLAYLKPLVALQQLNLRGCKKITDAGLTHLMS 840

Query: 299 LCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL- 355
           L  L+CL LS   ++   GL HL  L  L  ++L     ++D  L  L  L +L  LNL 
Sbjct: 841 LVALQCLSLSGCKKLTDDGLAHLKPLVALTHLSLGECVKLTDDGLAHLTPLLALTHLNLS 900

Query: 356 DARQITDTGLAALTSLTGLTHLDL 379
           D   +T  GLA LT L  LT++DL
Sbjct: 901 DCNNLTVAGLAHLTPLENLTYVDL 924


>gi|46447590|ref|YP_008955.1| hypothetical protein pc1956 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401231|emb|CAF24680.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 659

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 151/410 (36%), Positives = 225/410 (54%), Gaps = 12/410 (2%)

Query: 65  SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
             + +TD+ L+ LK+C NL+ L    C  ++D GL HL  L  L  L+    + +T  G+
Sbjct: 234 ENAHLTDAHLLALKNCKNLKELHLQECRNLTDAGLVHLAPLVALKHLNLNFCDKLTNTGL 293

Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
                L  L  L+L  C  +   GL +L  L  L+ LN+ +C+ +TD+ +  LS LT L+
Sbjct: 294 AHLRPLTALQHLNLGNCRNLTDAGLAHLTPLTALQHLNLNFCDKLTDTGLVRLSPLTALQ 353

Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QL 240
            L +S C  +TD+G+ +LK L  L  LNL  C  +T A L  L  L +L +L+L+ C  L
Sbjct: 354 HLDLSDCENLTDAGLVHLKPLVALQHLNLSCCENLTDAGLVHLKLLVALQHLDLSDCNNL 413

Query: 241 SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
           +D G    + + +L+ L+L + N +TD  LVHLK LT L+ L+L  C  + D+GL +LT 
Sbjct: 414 TDAGLAHLTPLTALQYLDLSYCNNLTDAGLVHLKFLTALQHLDLRGCDKVADDGLAHLTP 473

Query: 299 LCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD 356
           L  L+ L LS  + +  +GL HL  LT L+ + LS    ++D  L  L  L +L+ L+L 
Sbjct: 474 LTALQALSLSQCRNLTDAGLGHLKLLTALQYLRLSQCWNLTDAGLIHLRPLVALQHLDLS 533

Query: 357 A-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGV 413
               +TD GL  LT L  L HLDL +   +T  G A+LR+   L+ L +     LTDAG+
Sbjct: 534 YCGNLTDVGLVHLTPLMALQHLDLNYCENLTGDGLAHLRSLTTLQHLSLNQCWNLTDAGL 593

Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGL 462
            H++ L++L  L+LS   N TD  L  ++ L  L  LN+    R+T  GL
Sbjct: 594 VHLEPLTALQHLDLSYCGNFTDVGLVHLTSLMALQHLNLRGCDRVTDVGL 643



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 133/370 (35%), Positives = 205/370 (55%), Gaps = 12/370 (3%)

Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN 166
           + +L+F  N  +T   + A     NL +L L+ C  +   GLV+L  L+ L+ LN+ +C+
Sbjct: 227 IEALNFSENAHLTDAHLLALKNCKNLKELHLQECRNLTDAGLVHLAPLVALKHLNLNFCD 286

Query: 167 CITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSL 224
            +T++ +  L  LT L+ L + +C  +TD+G+A+L  L  L  LNL  C  +T   L  L
Sbjct: 287 KLTNTGLAHLRPLTALQHLNLGNCRNLTDAGLAHLTPLTALQHLNLNFCDKLTDTGLVRL 346

Query: 225 SALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLN 282
           S L +L +L+L+ C+ L+D G      + +L+ LNL   E +TD  LVHLK L  L+ L+
Sbjct: 347 SPLTALQHLDLSDCENLTDAGLVHLKPLVALQHLNLSCCENLTDAGLVHLKLLVALQHLD 406

Query: 283 LDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDG 339
           L  C  + D GL +LT L  L+ L+LS    +  +GL HL  LT L+ ++L     ++D 
Sbjct: 407 LSDCNNLTDAGLAHLTPLTALQYLDLSYCNNLTDAGLVHLKFLTALQHLDLRGCDKVADD 466

Query: 340 SLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKN 397
            L  L  L++L++L+L   R +TD GL  L  LT L +L L     +TD+G  +LR    
Sbjct: 467 GLAHLTPLTALQALSLSQCRNLTDAGLGHLKLLTALQYLRLSQCWNLTDAGLIHLRPLVA 526

Query: 398 LRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-S 455
           L+ L++   G LTD G+ H+  L +L  L+L+   NLT   L  +  LT L  L+++   
Sbjct: 527 LQHLDLSYCGNLTDVGLVHLTPLMALQHLDLNYCENLTGDGLAHLRSLTTLQHLSLNQCW 586

Query: 456 RITSAGLRHL 465
            +T AGL HL
Sbjct: 587 NLTDAGLVHL 596



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 124/368 (33%), Positives = 182/368 (49%), Gaps = 56/368 (15%)

Query: 46  DKWMD---VIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
           DK  D   V  S  ++L  +DLS   ++TD+GL+HLK    LQ L+ + C  ++D GL H
Sbjct: 336 DKLTDTGLVRLSPLTALQHLDLSDCENLTDAGLVHLKPLVALQHLNLSCCENLTDAGLVH 395

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESL 160
           L+ L  L  L     N +T  G+     L  L  LDL  C  +   GLV+LK L  L+ L
Sbjct: 396 LKLLVALQHLDLSDCNNLTDAGLAHLTPLTALQYLDLSYCNNLTDAGLVHLKFLTALQHL 455

Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTA 218
           +++ C+ + D  +  L+ LT L++L +S C  +TD+G+ +LK L  L  L L  C  +T 
Sbjct: 456 DLRGCDKVADDGLAHLTPLTALQALSLSQCRNLTDAGLGHLKLLTALQYLRLSQCWNLTD 515

Query: 219 ACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLT 276
           A L  L  L +L +L+L+ C  L+D G    + + +L+ L+L + E +T + L HL+ LT
Sbjct: 516 AGLIHLRPLVALQHLDLSYCGNLTDVGLVHLTPLMALQHLDLNYCENLTGDGLAHLRSLT 575

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
            L+ L+L+ C        NLT                 +GL HL  LT L+ ++LS+ G 
Sbjct: 576 TLQHLSLNQCW-------NLT----------------DAGLVHLEPLTALQHLDLSYCG- 611

Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNF 395
                                   TD GL  LTSL  L HL+L G  R+TD G A  + F
Sbjct: 612 ----------------------NFTDVGLVHLTSLMALQHLNLRGCDRVTDVGLALFKIF 649

Query: 396 KNLRSLEI 403
                L+I
Sbjct: 650 ATSLHLKI 657


>gi|168698161|ref|ZP_02730438.1| hypothetical protein GobsU_01477 [Gemmata obscuriglobus UQM 2246]
          Length = 417

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 197/348 (56%), Gaps = 3/348 (0%)

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
            G+K  AGL  L  L+L        G+  L G   L +LN+ +   +TD  +K L+G   
Sbjct: 64  AGVKELAGLKALTTLNLGATKVTDVGVKELAGFKALTTLNLSFTT-LTDVGVKELAGFKA 122

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-L 240
           L +L+++ + VTD+G+  L GL+ LT L L G  VT A +  L++L  L  L L   + +
Sbjct: 123 LTTLELNYTDVTDAGVKELAGLKALTTLGLGGTKVTDAGVKELASLKELSVLGLFAAKAV 182

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           +D G ++ + + +L  L LG  ++TD  +  L GL  L +L+L   G+ D G+  L GL 
Sbjct: 183 TDAGVKELAGLKALTTLELGLTKVTDAGVKELAGLKALTTLDLHYTGVTDAGVKELAGLK 242

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            L  L+L +T V  +G++ L+GL  L ++NL    ++D  +++LAGL +L +LNL   ++
Sbjct: 243 ALSVLDLGNTGVTDAGVKELAGLKALTTLNLGGAKVTDAGVKELAGLKALSTLNLGGTKV 302

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TDTGL  L     LT LDL    +TD+G   L     L  L++ G  LTDAGVK +  L+
Sbjct: 303 TDTGLKELAGFKALTTLDLSFTTLTDAGVKELAGLTALTLLDLSGTTLTDAGVKELAPLT 362

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHA 468
           +LT+L L +   +TD  L+ ++GL  L +L + N+++T AG++ L  A
Sbjct: 363 NLTMLYLGET-GVTDAGLKELAGLKNLTALFLFNTKVTDAGVKELTAA 409



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 124/364 (34%), Positives = 195/364 (53%), Gaps = 4/364 (1%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
             G  ++SV L    ++D+G+  L     L +L+     +++D G++ L G   LT+L+ 
Sbjct: 46  PSGKPVVSVFLYACPLSDAGVKELAGLKALTTLNLG-ATKVTDVGVKELAGFKALTTLNL 104

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
                +T  G+K  AG   L  L+L        G+  L GL  L +L +     +TD+ +
Sbjct: 105 SFTT-LTDVGVKELAGFKALTTLELNYTDVTDAGVKELAGLKALTTLGLGGTK-VTDAGV 162

Query: 174 KPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           K L+ L  L  L +  +K VTD+G+  L GL+ LT L L    VT A +  L+ L +L  
Sbjct: 163 KELASLKELSVLGLFAAKAVTDAGVKELAGLKALTTLELGLTKVTDAGVKELAGLKALTT 222

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           L+L+   ++D G ++ + + +L VL+LG   +TD  +  L GL  L +LNL    + D G
Sbjct: 223 LDLHYTGVTDAGVKELAGLKALSVLDLGNTGVTDAGVKELAGLKALTTLNLGGAKVTDAG 282

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
           +  L GL  L  L L  T+V  +GL+ L+G   L +++LSFT ++D  +++LAGL++L  
Sbjct: 283 VKELAGLKALSTLNLGGTKVTDTGLKELAGFKALTTLDLSFTTLTDAGVKELAGLTALTL 342

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
           L+L    +TD G+  L  LT LT L L    +TD+G   L   KNL +L +    +TDAG
Sbjct: 343 LDLSGTTLTDAGVKELAPLTNLTMLYLGETGVTDAGLKELAGLKNLTALFLFNTKVTDAG 402

Query: 413 VKHI 416
           VK +
Sbjct: 403 VKEL 406



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/326 (32%), Positives = 170/326 (52%), Gaps = 24/326 (7%)

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
           +   ++D+ +K L+GL  L +L +  +KVTD G+  L G + LT LNL    +T   +  
Sbjct: 57  YACPLSDAGVKELAGLKALTTLNLGATKVTDVGVKELAGFKALTTLNLSFTTLTDVGVKE 116

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           L+   +L  L LN   ++D G ++ + + +L  L LG  ++TD  +  L  L  L  L L
Sbjct: 117 LAGFKALTTLELNYTDVTDAGVKELAGLKALTTLGLGGTKVTDAGVKELASLKELSVLGL 176

Query: 284 DSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
            +   + D G+  L GL  L  LEL  T+V  +G++ L+GL  L +++L +TG++D  ++
Sbjct: 177 FAAKAVTDAGVKELAGLKALTTLELGLTKVTDAGVKELAGLKALTTLDLHYTGVTDAGVK 236

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
           +LAGL +L  L+L    +TD G+  L  L  LT L+L GA++TD+G   L   K L +L 
Sbjct: 237 ELAGLKALSVLDLGNTGVTDAGVKELAGLKALTTLNLGGAKVTDAGVKELAGLKALSTLN 296

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLS-----------------------QNCNLTDKTLE 439
           + G  +TD G+K +    +LT L+LS                           LTD  ++
Sbjct: 297 LGGTKVTDTGLKELAGFKALTTLDLSFTTLTDAGVKELAGLTALTLLDLSGTTLTDAGVK 356

Query: 440 LISGLTGLVSLNVSNSRITSAGLRHL 465
            ++ LT L  L +  + +T AGL+ L
Sbjct: 357 ELAPLTNLTMLYLGETGVTDAGLKEL 382



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/314 (34%), Positives = 175/314 (55%), Gaps = 4/314 (1%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           +L +++LS + +TD G+  L     L +L+ N+   ++D G++ L GL  LT+L      
Sbjct: 98  ALTTLNLSFTTLTDVGVKELAGFKALTTLELNYT-DVTDAGVKELAGLKALTTLGLG-GT 155

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
            +T  G+K  A L  L  L L     +   G+  L GL  L +L +     +TD+ +K L
Sbjct: 156 KVTDAGVKELASLKELSVLGLFAAKAVTDAGVKELAGLKALTTLELGLTK-VTDAGVKEL 214

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           +GL  L +L +  + VTD+G+  L GL+ L++L+L    VT A +  L+ L +L  LNL 
Sbjct: 215 AGLKALTTLDLHYTGVTDAGVKELAGLKALSVLDLGNTGVTDAGVKELAGLKALTTLNLG 274

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             +++D G ++ + + +L  LNLG  ++TD  L  L G   L +L+L    + D G+  L
Sbjct: 275 GAKVTDAGVKELAGLKALSTLNLGGTKVTDTGLKELAGFKALTTLDLSFTTLTDAGVKEL 334

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
            GL  L  L+LS T +  +G++ L+ LTNL  + L  TG++D  L++LAGL +L +L L 
Sbjct: 335 AGLTALTLLDLSGTTLTDAGVKELAPLTNLTMLYLGETGVTDAGLKELAGLKNLTALFLF 394

Query: 357 ARQITDTGLAALTS 370
             ++TD G+  LT+
Sbjct: 395 NTKVTDAGVKELTA 408



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/232 (35%), Positives = 134/232 (57%), Gaps = 2/232 (0%)

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           L  C LSD G ++ + + +L  LNLG  ++TD  +  L G   L +LNL    + D G+ 
Sbjct: 56  LYACPLSDAGVKELAGLKALTTLNLGATKVTDVGVKELAGFKALTTLNLSFTTLTDVGVK 115

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
            L G   L  LEL+ T V  +G++ L+GL  L ++ L  T ++D  +++LA L  L  L 
Sbjct: 116 ELAGFKALTTLELNYTDVTDAGVKELAGLKALTTLGLGGTKVTDAGVKELASLKELSVLG 175

Query: 355 L-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
           L  A+ +TD G+  L  L  LT L+L   ++TD+G   L   K L +L++   G+TDAGV
Sbjct: 176 LFAAKAVTDAGVKELAGLKALTTLELGLTKVTDAGVKELAGLKALTTLDLHYTGVTDAGV 235

Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           K +  L +L++L+L  N  +TD  ++ ++GL  L +LN+  +++T AG++ L
Sbjct: 236 KELAGLKALSVLDLG-NTGVTDAGVKELAGLKALTTLNLGGAKVTDAGVKEL 286


>gi|46447144|ref|YP_008509.1| hypothetical protein pc1510 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400785|emb|CAF24234.1| hypothetical protein pc1510 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 670

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 153/410 (37%), Positives = 210/410 (51%), Gaps = 33/410 (8%)

Query: 65  SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
             + +TD+ L+ LK C NL+ L    C  ++D GL HL  L  L  L   + + +T  G+
Sbjct: 275 ENAHLTDAHLLALKTCKNLKVLYLKKCCNLTDAGLPHLTPLVALQYLDLSKCHNLTDAGL 334

Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
                L  L  L L  C  +   GL +LK L+ L+ LN+  CN  TD+ +  L+ L  LK
Sbjct: 335 THLTFLDALNYLGLGECYNLTDTGLAHLKSLINLQHLNLNNCN-FTDAGLAHLTPLVTLK 393

Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
            L +S C  +TD+G+A+L  L  L  LNL  C  +T   L  LS L +L +LNLN C+L 
Sbjct: 394 YLNLSQCYNLTDAGLAHLTPLVNLQQLNLSDCTNLTDTGLAYLSPLVTLQHLNLNVCKLI 453

Query: 242 DDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
           D G    + + +L+ LNL +   +TD  L HL  L  L+ L+LD C  + D GL +LT L
Sbjct: 454 DAGLAHLTPLVNLQQLNLSYCTNLTDAGLAHLSTLVTLQHLDLDGCYKLTDIGLAHLTPL 513

Query: 300 CNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL-D 356
             LK L LS    +  +GL HL+ L  L+ ++LS+ G + D  L  L  L +LK L+L +
Sbjct: 514 VTLKYLNLSCCHNLTGAGLAHLTPLVALKHLDLSWNGDLEDAGLAHLTPLVALKYLDLSE 573

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
              +TD GLA L SL  L HLDL G                          LTDAG+ H+
Sbjct: 574 CYHLTDAGLAHLRSLVALKHLDLRGCY-----------------------QLTDAGIAHL 610

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHL 465
             L +L  L+L    NLTD  L  ++ L  L  L + N  RIT AGL HL
Sbjct: 611 TPLVALKYLDLKGCPNLTDAGLAHLTSLIALQDLELPNCQRITDAGLAHL 660



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 103/301 (34%), Positives = 159/301 (52%), Gaps = 7/301 (2%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           +L  ++L+  + TD+GL HL     L+ L+ + C  ++D GL HL  L NL  L+     
Sbjct: 367 NLQHLNLNNCNFTDAGLAHLTPLVTLKYLNLSQCYNLTDAGLAHLTPLVNLQQLNLSDCT 426

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
            +T  G+   + L+ L  L+L  C  I  GL +L  L+ L+ LN+ +C  +TD+ +  LS
Sbjct: 427 NLTDTGLAYLSPLVTLQHLNLNVCKLIDAGLAHLTPLVNLQQLNLSYCTNLTDAGLAHLS 486

Query: 178 GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNL 235
            L  L+ L +  C K+TD G+A+L  L  L  LNL  C  +T A L  L+ L +L +L+L
Sbjct: 487 TLVTLQHLDLDGCYKLTDIGLAHLTPLVTLKYLNLSCCHNLTGAGLAHLTPLVALKHLDL 546

Query: 236 N-RCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEG 292
           +    L D G    + + +LK L+L     +TD  L HL+ L  L+ L+L  C  + D G
Sbjct: 547 SWNGDLEDAGLAHLTPLVALKYLDLSECYHLTDAGLAHLRSLVALKHLDLRGCYQLTDAG 606

Query: 293 LVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSL 350
           + +LT L  LK L+L     +  +GL HL+ L  L+ + L     I+D  L  LA   +L
Sbjct: 607 IAHLTPLVALKYLDLKGCPNLTDAGLAHLTSLIALQDLELPNCQRITDAGLAHLASSMTL 666

Query: 351 K 351
           +
Sbjct: 667 R 667



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 110/226 (48%), Gaps = 29/226 (12%)

Query: 246 EKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           EK     S +V  L F+E   +TD  L+ LK   NL+ L L  C             CNL
Sbjct: 258 EKILNYFSNEVEALNFSENAHLTDAHLLALKTCKNLKVLYLKKC-------------CNL 304

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQI 360
                       +GL HL+ L  L+ ++LS    ++D  L  L  L +L  L L +   +
Sbjct: 305 T----------DAGLPHLTPLVALQYLDLSKCHNLTDAGLTHLTFLDALNYLGLGECYNL 354

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDL 419
           TDTGLA L SL  L HL+L     TD+G A+L     L+ L +     LTDAG+ H+  L
Sbjct: 355 TDTGLAHLKSLINLQHLNLNNCNFTDAGLAHLTPLVTLKYLNLSQCYNLTDAGLAHLTPL 414

Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
            +L  LNLS   NLTD  L  +S L  L  LN++  ++  AGL HL
Sbjct: 415 VNLQQLNLSDCTNLTDTGLAYLSPLVTLQHLNLNVCKLIDAGLAHL 460


>gi|46446522|ref|YP_007887.1| hypothetical protein pc0888 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400163|emb|CAF23612.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 653

 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 155/411 (37%), Positives = 230/411 (55%), Gaps = 13/411 (3%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           +TD+ L+ LKDC NL+ L    C  I+D GL HL  L+ L  L       +T  G+    
Sbjct: 236 LTDAHLLALKDCKNLKVLHLEKCQVITDDGLAHLTPLTALQHLELSDCRKLTDAGLAHLT 295

Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNC-ITDSDMKPLSGLTNLKSLQ 186
            L  L  L+L  C ++   GL +L  L  L+ LN+  C   +TD+ +  L+ LT L+ L 
Sbjct: 296 PLTALQHLNLSFCDKLTDAGLAHLTPLTALQHLNLSRCYYKLTDAGLAHLTPLTALQHLN 355

Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
           +S C K+TD+G+ +LK L  L  L+L E   +T A L  L+ L +L +L+L+ C +L+D 
Sbjct: 356 LSFCDKLTDAGLVHLKLLTGLQHLDLREFWELTGAGLAHLTTLTALQHLDLSGCDKLTDV 415

Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
           G    + + +L+ L+L     +T+  LVHLK LT L+ LNL  C  + D GL +LT L  
Sbjct: 416 GLAHLTPLTTLQHLDLKRCRNLTNAGLVHLKLLTGLQHLNLSECYHLTDAGLAHLTPLTA 475

Query: 302 LKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DAR 358
           L+ L+LS  +++   GL HL+ LT L+ ++LS  + ++D  L  L  L++L+ L L   R
Sbjct: 476 LQHLDLSQCSKLTDDGLAHLTPLTALQHLDLSQCSKLTDDGLAHLTPLTALQHLVLARCR 535

Query: 359 QITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 416
            +TD GLA LT L  L HL+L G  ++T +G A+LR    L+ L++    GLTDAG+ H+
Sbjct: 536 NLTDAGLAHLTPLETLQHLNLSGGYKLTGAGLAHLRPLVALQHLDLSYCNGLTDAGLAHL 595

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLN 466
             L +L  L+LS    LTD  L  +  L  L  L++S    +T AGL H  
Sbjct: 596 TPLVALQHLDLSYCDGLTDAGLTHLRPLVALQHLDLSYCDGLTDAGLAHFK 646



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 102/291 (35%), Positives = 157/291 (53%), Gaps = 33/291 (11%)

Query: 68  DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           ++T +GL HL   + LQ LD + C +++D GL HL  L+ L                   
Sbjct: 386 ELTGAGLAHLTTLTALQHLDLSGCDKLTDVGLAHLTPLTTLQ------------------ 427

Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
                   LDL+RC  + + GLV+LK L  L+ LN+  C  +TD+ +  L+ LT L+ L 
Sbjct: 428 -------HLDLKRCRNLTNAGLVHLKLLTGLQHLNLSECYHLTDAGLAHLTPLTALQHLD 480

Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDD 243
           +S CSK+TD G+A+L  L  L  L+L  C  +T   L  L+ L +L +L L RC+ L+D 
Sbjct: 481 LSQCSKLTDDGLAHLTPLTALQHLDLSQCSKLTDDGLAHLTPLTALQHLVLARCRNLTDA 540

Query: 244 GCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
           G    + + +L+ LNL G  ++T   L HL+ L  L+ L+L  C G+ D GL +LT L  
Sbjct: 541 GLAHLTPLETLQHLNLSGGYKLTGAGLAHLRPLVALQHLDLSYCNGLTDAGLAHLTPLVA 600

Query: 302 LKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSL 350
           L+ L+LS    +  +GL HL  L  L+ ++LS+  G++D  L     L+++
Sbjct: 601 LQHLDLSYCDGLTDAGLTHLRPLVALQHLDLSYCDGLTDAGLAHFKFLAAI 651



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 91/175 (52%), Gaps = 4/175 (2%)

Query: 32  ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
           ALQ L L Q   + D  +  + +  ++L  +DLS  S +TD GL HL   + LQ L    
Sbjct: 475 ALQHLDLSQCSKLTDDGLAHL-TPLTALQHLDLSQCSKLTDDGLAHLTPLTALQHLVLAR 533

Query: 91  CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
           C  ++D GL HL  L  L  L+      +T  G+     L+ L  LDL  C  +   GL 
Sbjct: 534 CRNLTDAGLAHLTPLETLQHLNLSGGYKLTGAGLAHLRPLVALQHLDLSYCNGLTDAGLA 593

Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGL 203
           +L  L+ L+ L++ +C+ +TD+ +  L  L  L+ L +S C  +TD+G+A+ K L
Sbjct: 594 HLTPLVALQHLDLSYCDGLTDAGLTHLRPLVALQHLDLSYCDGLTDAGLAHFKFL 648


>gi|46447096|ref|YP_008461.1| hypothetical protein pc1462 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400737|emb|CAF24186.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 870

 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 171/478 (35%), Positives = 250/478 (52%), Gaps = 47/478 (9%)

Query: 32  ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
           ALQ+L L +   + D  +  ++S  ++L  +DLSG  D+TD+GL HL    +LQ LD + 
Sbjct: 385 ALQNLDLSECYLLKDTGLAHLSSL-TALQYLDLSGCDDLTDAGLAHLTPLVSLQHLDLSK 443

Query: 91  CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
           C  ++  GL HL  L  L  L       +T  G+     L  L  LDL  C  +   GLV
Sbjct: 444 CENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLTALKHLDLSECKNLTDDGLV 503

Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-----SCSKVTDSGIAYLKGLQ 204
           +L  L+ L+ L++K C  +TD+ +  L+ LT L+ L +      C  +TD G+A+L  L 
Sbjct: 504 HLSSLVALQYLSLKLCENLTDAGLAHLTSLTALEHLDLGLDFGYCQNLTDDGLAHLSSLT 563

Query: 205 KLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFN 262
            L  L+L     +T A L  L++L +L +L+L+ C+ L+D+G    + + +L+ L+L  +
Sbjct: 564 ALKHLDLSWRENLTDAGLAHLTSLTALKHLDLSWCENLTDEGLAYLTPLVALQYLSLKGS 623

Query: 263 EITDECLVHLKGLTNLESLNLDSCG--IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRH 319
           +ITDE L HL  L+ L  L+L+ C       GL +LT L NL+ L+LS    + S  L  
Sbjct: 624 DITDEGLEHLAHLSALRHLSLNDCRRIYHGYGLAHLTTLVNLEHLDLSGCYSLSSFKLIF 683

Query: 320 LSGLTNLESINLS--FTGISDGSLRKLAGLSSLKSLNLDA-------------------- 357
           LS L NL+ +NLS  F    DG L  L  L +L+ L+L +                    
Sbjct: 684 LSSLVNLQHLNLSGCFGLYHDG-LEDLTPLMNLQYLDLSSCINLTDKGLAYLTSLVGLGL 742

Query: 358 --------RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GG 407
                   ++ITDTGLA LTSL GL +LDL +   +TD G AYL +F  L+ L + G   
Sbjct: 743 QHLDLSGCKEITDTGLAHLTSLVGLEYLDLSWCENLTDKGLAYLTSFAGLKYLNLKGCKK 802

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRH 464
           +TDAG+ H+  L +L  LNLS+  NLTD  L  +  L  L  L +   + IT  GL H
Sbjct: 803 ITDAGLAHLTSLVTLQRLNLSECVNLTDTGLAHLVSLVNLQDLELRECKSITDTGLAH 860



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 156/438 (35%), Positives = 223/438 (50%), Gaps = 43/438 (9%)

Query: 71  DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
           D+GL HL   + LQ+LD + C  + D GL HL  L+ L  L     + +T  G+     L
Sbjct: 374 DTGLAHLTSLTALQNLDLSECYLLKDTGLAHLSSLTALQYLDLSGCDDLTDAGLAHLTPL 433

Query: 131 INLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
           ++L  LDL +C  + G GL +L  L+ L  L +  C  +TD+ +  L+ LT LK L +S 
Sbjct: 434 VSLQHLDLSKCENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLTALKHLDLSE 493

Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNL----NRCQ-LSD 242
           C  +TD G+ +L  L  L  L+L+ C  +T A L  L++L +L +L+L      CQ L+D
Sbjct: 494 CKNLTDDGLVHLSSLVALQYLSLKLCENLTDAGLAHLTSLTALEHLDLGLDFGYCQNLTD 553

Query: 243 DGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC 300
           DG    S + +LK L+L + E +TD  L HL  LT L+ L+L  C  + DEGL  LT L 
Sbjct: 554 DGLAHLSSLTALKHLDLSWRENLTDAGLAHLTSLTALKHLDLSWCENLTDEGLAYLTPLV 613

Query: 301 NLKCLELSDTQVGSSGLRHLSGLT--------------------------NLESINLS-F 333
            L+ L L  + +   GL HL+ L+                          NLE ++LS  
Sbjct: 614 ALQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCRRIYHGYGLAHLTTLVNLEHLDLSGC 673

Query: 334 TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAY 391
             +S   L  L+ L +L+ LNL     +   GL  LT L  L +LDL     +TD G AY
Sbjct: 674 YSLSSFKLIFLSSLVNLQHLNLSGCFGLYHDGLEDLTPLMNLQYLDLSSCINLTDKGLAY 733

Query: 392 LRNFK--NLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
           L +     L+ L++ G   +TD G+ H+  L  L  L+LS   NLTDK L  ++   GL 
Sbjct: 734 LTSLVGLGLQHLDLSGCKEITDTGLAHLTSLVGLEYLDLSWCENLTDKGLAYLTSFAGLK 793

Query: 449 SLNVSN-SRITSAGLRHL 465
            LN+    +IT AGL HL
Sbjct: 794 YLNLKGCKKITDAGLAHL 811



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 116/326 (35%), Positives = 173/326 (53%), Gaps = 41/326 (12%)

Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV----TDSGIAYLKGLQKLTLLNLE 212
           +E LN+   +  T++       L N K+L++ C K+     D+G+A+L  L  L  L+L 
Sbjct: 336 IEELNLSGKDFFTEAHFL---ALKNCKNLKVLCLKIFYTPIDTGLAHLTSLTALQNLDLS 392

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 271
            C                 YL      L D G    S + +L+ L+L G +++TD  L H
Sbjct: 393 EC-----------------YL------LKDTGLAHLSSLTALQYLDLSGCDDLTDAGLAH 429

Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESI 329
           L  L +L+ L+L  C  +  +GL +LT L  L+ L LSD + +  +GL HL+ LT L+ +
Sbjct: 430 LTPLVSLQHLDLSKCENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLTALKHL 489

Query: 330 NLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL---FG--A 382
           +LS    ++D  L  L+ L +L+ L+L     +TD GLA LTSLT L HLDL   FG   
Sbjct: 490 DLSECKNLTDDGLVHLSSLVALQYLSLKLCENLTDAGLAHLTSLTALEHLDLGLDFGYCQ 549

Query: 383 RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
            +TD G A+L +   L+ L++     LTDAG+ H+  L++L  L+LS   NLTD+ L  +
Sbjct: 550 NLTDDGLAHLSSLTALKHLDLSWRENLTDAGLAHLTSLTALKHLDLSWCENLTDEGLAYL 609

Query: 442 SGLTGLVSLNVSNSRITSAGLRHLNH 467
           + L  L  L++  S IT  GL HL H
Sbjct: 610 TPLVALQYLSLKGSDITDEGLEHLAH 635


>gi|46446910|ref|YP_008275.1| hypothetical protein pc1276 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400551|emb|CAF24000.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 667

 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 148/413 (35%), Positives = 234/413 (56%), Gaps = 14/413 (3%)

Query: 66  GSDVTDSGLIHLKDCSN-LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
            S VT+   I LK  SN ++ L+F+  I ++D  L  L+   NL +L  +  + +T  G+
Sbjct: 243 ASHVTEFEKI-LKHFSNEIERLNFSKNIFLTDAHLLALKNCKNLKALHLQECDKLTDAGL 301

Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
              A L+ L  L+L  C  +   GL +L  LM L+ LN+  C+ ITD+ +  L+ L  L+
Sbjct: 302 AHLASLMALQHLNLNGCWELTDAGLAHLASLMALQHLNLAKCHKITDAGLAHLTSLVALQ 361

Query: 184 SLQISCSK-VTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-L 240
            L +SC + +TD+G+ +L+ L  LT LNL  C  +T A L  L++L +L +L+L+ C+ L
Sbjct: 362 HLDLSCCRNLTDAGLTHLRPLVALTHLNLAKCHKITDAGLAHLTSLVALQHLDLSYCEKL 421

Query: 241 SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
           +D G    + + +L+ L+L + +  T+  L HL  L  L+ LNL+SC    D GL +LT 
Sbjct: 422 TDAGLAHLTPLVALQHLDLSYSHHFTNAGLAHLTSLVALQHLNLNSCYKFTDAGLAHLTS 481

Query: 299 LCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 356
           L  L+ L+LS  + +  +GL HL+ L  L+ ++LS++   ++  L  L  L +L+ L+L 
Sbjct: 482 LVALQHLDLSCCRNLTDAGLAHLAPLVALQHLDLSYSHHFTNAGLAHLTSLVALQHLDLS 541

Query: 357 A-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGV 413
             R +TD GLA LTSL  L HLDL    ++TD+G  +L     L+ L++     LTDAG+
Sbjct: 542 CCRNLTDAGLAHLTSLVALQHLDLSSCKKLTDAGLEHLTPLVALQHLDLSSCKKLTDAGL 601

Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHL 465
            H+  L +L  L+LS    LTD  L  ++ L  L  LN++   ++T AG+ H 
Sbjct: 602 AHLAPLVALQHLDLSSCKKLTDAGLAHLAPLVALQHLNLNWCDKLTDAGVAHF 654



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 136/370 (36%), Positives = 205/370 (55%), Gaps = 13/370 (3%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           +TD+GL HL     LQ L+ N C +++D GL HL  L  L  L+  + + IT  G+    
Sbjct: 296 LTDAGLAHLASLMALQHLNLNGCWELTDAGLAHLASLMALQHLNLAKCHKITDAGLAHLT 355

Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
            L+ L  LDL  C  +   GL +L+ L+ L  LN+  C+ ITD+ +  L+ L  L+ L +
Sbjct: 356 SLVALQHLDLSCCRNLTDAGLTHLRPLVALTHLNLAKCHKITDAGLAHLTSLVALQHLDL 415

Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLE-GCPVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
           S C K+TD+G+A+L  L  L  L+L      T A L  L++L +L +LNLN C + +D G
Sbjct: 416 SYCEKLTDAGLAHLTPLVALQHLDLSYSHHFTNAGLAHLTSLVALQHLNLNSCYKFTDAG 475

Query: 245 CEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLD-SCGIGDEGLVNLTGLCNL 302
               + + +L+ L+L     +TD  L HL  L  L+ L+L  S    + GL +LT L  L
Sbjct: 476 LAHLTSLVALQHLDLSCCRNLTDAGLAHLAPLVALQHLDLSYSHHFTNAGLAHLTSLVAL 535

Query: 303 KCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQ 359
           + L+LS  + +  +GL HL+ L  L+ ++LS    ++D  L  L  L +L+ L+L + ++
Sbjct: 536 QHLDLSCCRNLTDAGLAHLTSLVALQHLDLSSCKKLTDAGLEHLTPLVALQHLDLSSCKK 595

Query: 360 ITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIK 417
           +TD GLA L  L  L HLDL    ++TD+G A+L     L+ L +     LTDAGV H K
Sbjct: 596 LTDAGLAHLAPLVALQHLDLSSCKKLTDAGLAHLAPLVALQHLNLNWCDKLTDAGVAHFK 655

Query: 418 DLSSLTLLNL 427
             SS+  L+L
Sbjct: 656 --SSVAPLHL 663



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 131/387 (33%), Positives = 217/387 (56%), Gaps = 13/387 (3%)

Query: 20  LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
           LT+  L A ++C  L+ L L +   + D  +  +AS  + L  ++L+G  ++TD+GL HL
Sbjct: 271 LTDAHLLALKNCKNLKALHLQECDKLTDAGLAHLASLMA-LQHLNLNGCWELTDAGLAHL 329

Query: 78  KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
                LQ L+   C +I+D GL HL  L  L  L       +T  G+     L+ L  L+
Sbjct: 330 ASLMALQHLNLAKCHKITDAGLAHLTSLVALQHLDLSCCRNLTDAGLTHLRPLVALTHLN 389

Query: 138 LERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDS 195
           L +C +I   GL +L  L+ L+ L++ +C  +TD+ +  L+ L  L+ L +S S   T++
Sbjct: 390 LAKCHKITDAGLAHLTSLVALQHLDLSYCEKLTDAGLAHLTPLVALQHLDLSYSHHFTNA 449

Query: 196 GIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGS 253
           G+A+L  L  L  LNL  C   T A L  L++L +L +L+L+ C+ L+D G    + + +
Sbjct: 450 GLAHLTSLVALQHLNLNSCYKFTDAGLAHLTSLVALQHLDLSCCRNLTDAGLAHLAPLVA 509

Query: 254 LKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-T 310
           L+ L+L + +  T+  L HL  L  L+ L+L  C  + D GL +LT L  L+ L+LS   
Sbjct: 510 LQHLDLSYSHHFTNAGLAHLTSLVALQHLDLSCCRNLTDAGLAHLTSLVALQHLDLSSCK 569

Query: 311 QVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL 368
           ++  +GL HL+ L  L+ ++LS    ++D  L  LA L +L+ L+L + +++TD GLA L
Sbjct: 570 KLTDAGLEHLTPLVALQHLDLSSCKKLTDAGLAHLAPLVALQHLDLSSCKKLTDAGLAHL 629

Query: 369 TSLTGLTHLDL-FGARITDSGAAYLRN 394
             L  L HL+L +  ++TD+G A+ ++
Sbjct: 630 APLVALQHLNLNWCDKLTDAGVAHFKS 656


>gi|298709085|emb|CBJ31033.1| Hypothetical leucine rich repeat protein [Ectocarpus siliculosus]
          Length = 573

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 166/521 (31%), Positives = 243/521 (46%), Gaps = 61/521 (11%)

Query: 2   LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQ---GSS 58
           LPR++   +   L   R L+  +L AFRDC +  L LG+  GV + W+  +      G  
Sbjct: 22  LPREVVDALLGSLTQHRALSSYALRAFRDCEVTSLALGECRGVRNGWVRELLQATPCGRC 81

Query: 59  LLSVDLSG-SDVTDSGL-----------IHLKDCSNL--------------QSLDFNFCI 92
           ++++DLS  + +TD+GL             L+ CS L              ++L    C 
Sbjct: 82  IVTLDLSSCTGLTDTGLSDLPALKSLESASLRRCSGLGTEATLCLSNSPGLETLSLAHCP 141

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-L 151
            + D  + +L GLS L SL       I+ +G++    L +L  L+  RC   HG  V+ L
Sbjct: 142 LLDDAAVGNLAGLSRLRSLELEGCENISDEGLRLACRLPSLTCLNASRC---HGLTVDGL 198

Query: 152 KGLMK----LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA--------- 198
            GL +    L+ LN+ WC  +                 +         G +         
Sbjct: 199 AGLEQAAGGLKRLNLGWCAGLVRGSAAAGGRGGEESDDEDDEDDEDGGGDSDDEGLGGGR 258

Query: 199 --------YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC---QLSDDGCEK 247
                    L  L KL  + L    +    L  LSA GS    +L+ C   +L++ G   
Sbjct: 259 RRRRRGRWVLPVLPKLERVCLARSGIGNEGLSRLSA-GSPLLRDLDLCGCVRLTESGAHT 317

Query: 248 FSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
            S +  L+ L+L  N     C+  L + L  L +LNLD C +GD G+  L+ L  L+ L 
Sbjct: 318 LSALQDLETLDLS-NCRVYSCVEELAQKLPGLTALNLDRCNVGDTGVRALSSLTKLERLN 376

Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
           L+DT +  +G+ HL+ LT L  +NL F  I+D  L  LA LS+L  LNLD R + D G+ 
Sbjct: 377 LADTSITDAGMTHLAPLTRLRDLNLFFCHITDAGLGPLAALSNLVRLNLDTRDVGDAGMV 436

Query: 367 ALTSLTGLTHLDLFGARITDSGAAY-LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
            LT L  L  LD+F A ITD G A+ L     L +LE+C G LTD G+ H+  + SLT L
Sbjct: 437 QLTRLRLLESLDVFSASITDFGVAHGLCRLPCLTTLEVCSGRLTDRGLYHLSRVKSLTRL 496

Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
           N+SQN  +T   +  +  LT L SLN+S+  IT + L  L 
Sbjct: 497 NVSQNFGITAAGVRHVGTLTRLRSLNLSSCNITPSSLNSLT 537



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/271 (35%), Positives = 135/271 (49%), Gaps = 27/271 (9%)

Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
           C ++T+SG   L  LQ L  L+L  C V +   +    L  L  LNL+RC + D G    
Sbjct: 307 CVRLTESGAHTLSALQDLETLDLSNCRVYSCVEELAQKLPGLTALNLDRCNVGDTGVRAL 366

Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
           S +  L+ LNL    ITD  + HL  LT L  LNL  C I D                  
Sbjct: 367 SSLTKLERLNLADTSITDAGMTHLAPLTRLRDLNLFFCHITD------------------ 408

Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA-A 367
                 +GL  L+ L+NL  +NL    + D  + +L  L  L+SL++ +  ITD G+A  
Sbjct: 409 ------AGLGPLAALSNLVRLNLDTRDVGDAGMVQLTRLRLLESLDVFSASITDFGVAHG 462

Query: 368 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLN 426
           L  L  LT L++   R+TD G  +L   K+L  L +    G+T AGV+H+  L+ L  LN
Sbjct: 463 LCRLPCLTTLEVCSGRLTDRGLYHLSRVKSLTRLNVSQNFGITAAGVRHVGTLTRLRSLN 522

Query: 427 LSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
           LS +CN+T  +L  ++GL  L SL+V   R+
Sbjct: 523 LS-SCNITPSSLNSLTGLVNLESLSVFGCRL 552



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 99/296 (33%), Positives = 144/296 (48%), Gaps = 35/296 (11%)

Query: 138 LERCTRIHGGLVNLKGLMKLES-----LNIKWCNCI--TDSDMKPLSGLTNLKSLQISCS 190
           LER      G+ N +GL +L +      ++  C C+  T+S    LS L +L++L +S  
Sbjct: 274 LERVCLARSGIGN-EGLSRLSAGSPLLRDLDLCGCVRLTESGAHTLSALQDLETLDLSNC 332

Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
           +V        + L  LT LNL+ C V    + +LS+L  L  LNL    ++D G    + 
Sbjct: 333 RVYSCVEELAQKLPGLTALNLDRCNVGDTGVRALSSLTKLERLNLADTSITDAGMTHLAP 392

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT------------- 297
           +  L+ LNL F  ITD  L  L  L+NL  LNLD+  +GD G+V LT             
Sbjct: 393 LTRLRDLNLFFCHITDAGLGPLAALSNLVRLNLDTRDVGDAGMVQLTRLRLLESLDVFSA 452

Query: 298 ---------GLCNLKC---LELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKL 344
                    GLC L C   LE+   ++   GL HLS + +L  +N+S   GI+   +R +
Sbjct: 453 SITDFGVAHGLCRLPCLTTLEVCSGRLTDRGLYHLSRVKSLTRLNVSQNFGITAAGVRHV 512

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR-NFKNLR 399
             L+ L+SLNL +  IT + L +LT L  L  L +FG R+  +    LR    NLR
Sbjct: 513 GTLTRLRSLNLSSCNITPSSLNSLTGLVNLESLSVFGCRLEMTDLELLREKLPNLR 568



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 121/253 (47%), Gaps = 36/253 (14%)

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGS--LKVLNL-GFNEITDECLVHLKGLTNLES 280
           L  L  L  + L R  + ++G  + S  GS  L+ L+L G   +T+     L  L +LE+
Sbjct: 268 LPVLPKLERVCLARSGIGNEGLSRLSA-GSPLLRDLDLCGCVRLTESGAHTLSALQDLET 326

Query: 281 LNLDSCGIG---DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           L+L +C +    +E    L GL     L L    VG +G+R LS LT LE +NL+ T I+
Sbjct: 327 LDLSNCRVYSCVEELAQKLPGL---TALNLDRCNVGDTGVRALSSLTKLERLNLADTSIT 383

Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
           D  +  LA L+ L+ LNL    ITD GL  L +L+ L  L+L    + D+G   L   + 
Sbjct: 384 DAGMTHLAPLTRLRDLNLFFCHITDAGLGPLAALSNLVRLNLDTRDVGDAGMVQLTRLRL 443

Query: 398 LRSLEICGGGLTDAGVKH-IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
           L SL++    +TD GV H +  L  LT             TLE+ SG            R
Sbjct: 444 LESLDVFSASITDFGVAHGLCRLPCLT-------------TLEVCSG------------R 478

Query: 457 ITSAGLRHLNHAR 469
           +T  GL HL+  +
Sbjct: 479 LTDRGLYHLSRVK 491



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 115/240 (47%), Gaps = 29/240 (12%)

Query: 49  MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL 108
           ++ +A +   L +++L   +V D+G+  L   + L+ L+      I+D G+ HL  L+ L
Sbjct: 338 VEELAQKLPGLTALNLDRCNVGDTGVRALSSLTKLERLNLAD-TSITDAGMTHLAPLTRL 396

Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
             L+    + IT  G+   A L NLV+L+L+       G+V L  L  LESL++ +   I
Sbjct: 397 RDLNLFFCH-ITDAGLGPLAALSNLVRLNLDTRDVGDAGMVQLTRLRLLESLDV-FSASI 454

Query: 169 TDSDMKP-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLDSLSA 226
           TD  +   L  L  L +L++   ++TD G+ +L  ++ LT LN+ +   +TAA +  +  
Sbjct: 455 TDFGVAHGLCRLPCLTTLEVCSGRLTDRGLYHLSRVKSLTRLNVSQNFGITAAGVRHVGT 514

Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
           L  L  LNL+ C                         IT   L  L GL NLESL++  C
Sbjct: 515 LTRLRSLNLSSCN------------------------ITPSSLNSLTGLVNLESLSVFGC 550



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 24/134 (17%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLD-FNFCI----------------------- 92
           S+L+ ++L   DV D+G++ L     L+SLD F+  I                       
Sbjct: 418 SNLVRLNLDTRDVGDAGMVQLTRLRLLESLDVFSASITDFGVAHGLCRLPCLTTLEVCSG 477

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           +++D GL HL  + +LT L+  +N  ITA G++    L  L  L+L  C      L +L 
Sbjct: 478 RLTDRGLYHLSRVKSLTRLNVSQNFGITAAGVRHVGTLTRLRSLNLSSCNITPSSLNSLT 537

Query: 153 GLMKLESLNIKWCN 166
           GL+ LESL++  C 
Sbjct: 538 GLVNLESLSVFGCR 551


>gi|149174278|ref|ZP_01852905.1| serine/threonine protein kinase [Planctomyces maris DSM 8797]
 gi|148846823|gb|EDL61159.1| serine/threonine protein kinase [Planctomyces maris DSM 8797]
          Length = 1815

 Score =  177 bits (449), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 142/445 (31%), Positives = 219/445 (49%), Gaps = 37/445 (8%)

Query: 54   SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
            S   SL ++ +  + +++SG+  LKD   L+ L F    QI   GL HL+ L NL  L  
Sbjct: 1328 SNMPSLTTLYVGSTAISNSGVEQLKDMKQLEKLSFT-NTQIDGVGLGHLKDLKNLKILGL 1386

Query: 114  RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
              + +I+   ++   GL  L+ L L  C     GL  LK L  L+ L++     ITD  +
Sbjct: 1387 E-STSISDVDLQHLHGLKILIVLGLSNCKIADSGLAYLKDLKNLKVLSLD-STPITDEGL 1444

Query: 174  KPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLL-NLEGCPVTAA------------ 219
            K LSGL  L++L++  +KVT  GIA L K L    ++ + E  P+  +            
Sbjct: 1445 KHLSGLKMLQTLELQKTKVTPQGIASLQKALPNCKIVSDFETKPIMTSDSPMTDREIAEW 1504

Query: 220  CLDSLSALGSLFYLN-----------------LNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
             +     +G  F LN                 L      D   ++ +K+ +LK L L   
Sbjct: 1505 VIGMGGGIGIGFKLNYKIEELPTEPVIFNSVSLKNASFEDHDLQRLAKLKTLKYLFLEST 1564

Query: 263  EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
             I+D  L +L+ + NLE + LD   I DEGL++L GL NL+ L LS T++   GL HL  
Sbjct: 1565 SISDTGLQYLRQMQNLEEIFLDYTNITDEGLLHLRGLQNLRVLRLSKTKITGEGLGHLKD 1624

Query: 323  LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHL-DLF 380
            L  L +I+++   I++  ++ +  L  L SLN+    Q+ DTGL  +  LT L  L    
Sbjct: 1625 LPRLHTIDVNRAAITNSGMKAMGDLKQLTSLNISFNSQVDDTGLGYIEGLTKLEKLFAHL 1684

Query: 381  GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
              +ITD G  +L+  K L SL +   G+T  G++ +    SL+ L+L+ NC +TD  LE 
Sbjct: 1685 VPKITDEGLKHLQGMKQLESLTLSSTGITTTGLEQLTKHESLSKLDLT-NCKITDSGLEH 1743

Query: 441  ISGLTGLVSLNVSNSRITSAGLRHL 465
            +  L  L  L +  + ++ AGL+HL
Sbjct: 1744 LQDLKNLRDLRLDLTPVSDAGLQHL 1768



 Score =  144 bits (363), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 124/414 (29%), Positives = 193/414 (46%), Gaps = 66/414 (15%)

Query: 64   LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
            L  + ++D  L HL     L  L  + C +I+D GL +L+ L NL  LS   +  IT +G
Sbjct: 1386 LESTSISDVDLQHLHGLKILIVLGLSNC-KIADSGLAYLKDLKNLKVLSLD-STPITDEG 1443

Query: 124  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
            +K  +GL  L  L+L++      G+ +L+  +         C  ++D + KP+       
Sbjct: 1444 LKHLSGLKMLQTLELQKTKVTPQGIASLQKALPN-------CKIVSDFETKPI------- 1489

Query: 184  SLQISCSKVTDSGIA------------YLKGLQKLTLLNLEGCPVTAACLDS-------- 223
                S S +TD  IA              K   K+  L  E     +  L +        
Sbjct: 1490 --MTSDSPMTDREIAEWVIGMGGGIGIGFKLNYKIEELPTEPVIFNSVSLKNASFEDHDL 1547

Query: 224  --LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
              L+ L +L YL L    +SD G +   ++ +L+ + L +  ITDE L+HL+GL NL  L
Sbjct: 1548 QRLAKLKTLKYLFLESTSISDTGLQYLRQMQNLEEIFLDYTNITDEGLLHLRGLQNLRVL 1607

Query: 282  NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF------TG 335
             L    I  EGL +L  L  L  ++++   + +SG++ +  L  L S+N+SF      TG
Sbjct: 1608 RLSKTKITGEGLGHLKDLPRLHTIDVNRAAITNSGMKAMGDLKQLTSLNISFNSQVDDTG 1667

Query: 336  --------------------ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
                                I+D  L+ L G+  L+SL L +  IT TGL  LT    L+
Sbjct: 1668 LGYIEGLTKLEKLFAHLVPKITDEGLKHLQGMKQLESLTLSSTGITTTGLEQLTKHESLS 1727

Query: 376  HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 429
             LDL   +ITDSG  +L++ KNLR L +    ++DAG++H+  L  L  L+L +
Sbjct: 1728 KLDLTNCKITDSGLEHLQDLKNLRDLRLDLTPVSDAGLQHLYSLKKLENLDLRE 1781



 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 81/248 (32%), Positives = 135/248 (54%), Gaps = 4/248 (1%)

Query: 150  NLKGLMKLESLNIKW--CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
            +L+ L KL++L   +     I+D+ ++ L  + NL+ + +  + +TD G+ +L+GLQ L 
Sbjct: 1546 DLQRLAKLKTLKYLFLESTSISDTGLQYLRQMQNLEEIFLDYTNITDEGLLHLRGLQNLR 1605

Query: 208  LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITD 266
            +L L    +T   L  L  L  L  +++NR  +++ G +    +  L  LN+ FN ++ D
Sbjct: 1606 VLRLSKTKITGEGLGHLKDLPRLHTIDVNRAAITNSGMKAMGDLKQLTSLNISFNSQVDD 1665

Query: 267  ECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
              L +++GLT LE L       I DEGL +L G+  L+ L LS T + ++GL  L+   +
Sbjct: 1666 TGLGYIEGLTKLEKLFAHLVPKITDEGLKHLQGMKQLESLTLSSTGITTTGLEQLTKHES 1725

Query: 326  LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
            L  ++L+   I+D  L  L  L +L+ L LD   ++D GL  L SL  L +LDL   ++T
Sbjct: 1726 LSKLDLTNCKITDSGLEHLQDLKNLRDLRLDLTPVSDAGLQHLYSLKKLENLDLRETKVT 1785

Query: 386  DSGAAYLR 393
              G A L+
Sbjct: 1786 SQGIADLQ 1793



 Score =  122 bits (306), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 85/256 (33%), Positives = 135/256 (52%), Gaps = 3/256 (1%)

Query: 115  RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
            +N +     ++  A L  L  L LE  +    GL  L+ +  LE + + + N ITD  + 
Sbjct: 1538 KNASFEDHDLQRLAKLKTLKYLFLESTSISDTGLQYLRQMQNLEEIFLDYTN-ITDEGLL 1596

Query: 175  PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
             L GL NL+ L++S +K+T  G+ +LK L +L  +++    +T + + ++  L  L  LN
Sbjct: 1597 HLRGLQNLRVLRLSKTKITGEGLGHLKDLPRLHTIDVNRAAITNSGMKAMGDLKQLTSLN 1656

Query: 235  LN-RCQLSDDGCEKFSKIGSL-KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
            ++   Q+ D G      +  L K+      +ITDE L HL+G+  LESL L S GI   G
Sbjct: 1657 ISFNSQVDDTGLGYIEGLTKLEKLFAHLVPKITDEGLKHLQGMKQLESLTLSSTGITTTG 1716

Query: 293  LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
            L  LT   +L  L+L++ ++  SGL HL  L NL  + L  T +SD  L+ L  L  L++
Sbjct: 1717 LEQLTKHESLSKLDLTNCKITDSGLEHLQDLKNLRDLRLDLTPVSDAGLQHLYSLKKLEN 1776

Query: 353  LNLDARQITDTGLAAL 368
            L+L   ++T  G+A L
Sbjct: 1777 LDLRETKVTSQGIADL 1792



 Score =  105 bits (261), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 97/361 (26%), Positives = 158/361 (43%), Gaps = 34/361 (9%)

Query: 136  LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
            LDL+  +     L  L GL  L  LN++    ++D+ ++ L  +  L  + +  +++TD 
Sbjct: 1265 LDLKGTSVKDDDLKRLAGLKTLPKLNLE-NTLVSDTGLQYLKDIP-LNYISLIGTQITDK 1322

Query: 196  GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
            G  YL  +  LT L +    ++ + ++ L  +  L  L+    Q+   G      + +LK
Sbjct: 1323 GFGYLSNMPSLTTLYVGSTAISNSGVEQLKDMKQLEKLSFTNTQIDGVGLGHLKDLKNLK 1382

Query: 256  VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
            +L L    I+D  L HL GL  L  L L +C I D GL  L  L NLK L L  T +   
Sbjct: 1383 ILGLESTSISDVDLQHLHGLKILIVLGLSNCKIADSGLAYLKDLKNLKVLSLDSTPITDE 1442

Query: 316  GLRHLSGLTNLESINLSFTGISD---GSLR------KLAGLSSLKSLNLDARQITDTGLA 366
            GL+HLSGL  L+++ L  T ++     SL+      K+      K +      +TD  +A
Sbjct: 1443 GLKHLSGLKMLQTLELQKTKVTPQGIASLQKALPNCKIVSDFETKPIMTSDSPMTDREIA 1502

Query: 367  AL----------------------TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
                                    T       + L  A   D     L   K L+ L + 
Sbjct: 1503 EWVIGMGGGIGIGFKLNYKIEELPTEPVIFNSVSLKNASFEDHDLQRLAKLKTLKYLFLE 1562

Query: 405  GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
               ++D G+++++ + +L  + L    N+TD+ L  + GL  L  L +S ++IT  GL H
Sbjct: 1563 STSISDTGLQYLRQMQNLEEIFLDYT-NITDEGLLHLRGLQNLRVLRLSKTKITGEGLGH 1621

Query: 465  L 465
            L
Sbjct: 1622 L 1622



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 119/243 (48%), Gaps = 27/243 (11%)

Query: 55   QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
            Q  +L  + L  +++TD GL+HL+   NL+ L  +   +I+  GL HL+ L  L ++   
Sbjct: 1576 QMQNLEEIFLDYTNITDEGLLHLRGLQNLRVLRLS-KTKITGEGLGHLKDLPRLHTIDVN 1634

Query: 115  RNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDM 173
            R  AIT  GMKA   L  L  L++   +++   GL  ++GL KLE L       ITD  +
Sbjct: 1635 RA-AITNSGMKAMGDLKQLTSLNISFNSQVDDTGLGYIEGLTKLEKLFAHLVPKITDEGL 1693

Query: 174  KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
            K L G+  L+SL +S + +T +G                        L+ L+   SL  L
Sbjct: 1694 KHLQGMKQLESLTLSSTGITTTG------------------------LEQLTKHESLSKL 1729

Query: 234  NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
            +L  C+++D G E    + +L+ L L    ++D  L HL  L  LE+L+L    +  +G+
Sbjct: 1730 DLTNCKITDSGLEHLQDLKNLRDLRLDLTPVSDAGLQHLYSLKKLENLDLRETKVTSQGI 1789

Query: 294  VNL 296
             +L
Sbjct: 1790 ADL 1792



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 71/212 (33%), Positives = 107/212 (50%), Gaps = 1/212 (0%)

Query: 206  LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
            +  L+L+G  V    L  L+ L +L  LNL    +SD G +    I  L  ++L   +IT
Sbjct: 1262 INFLDLKGTSVKDDDLKRLAGLKTLPKLNLENTLVSDTGLQYLKDI-PLNYISLIGTQIT 1320

Query: 266  DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
            D+   +L  + +L +L + S  I + G+  L  +  L+ L  ++TQ+   GL HL  L N
Sbjct: 1321 DKGFGYLSNMPSLTTLYVGSTAISNSGVEQLKDMKQLEKLSFTNTQIDGVGLGHLKDLKN 1380

Query: 326  LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
            L+ + L  T ISD  L+ L GL  L  L L   +I D+GLA L  L  L  L L    IT
Sbjct: 1381 LKILGLESTSISDVDLQHLHGLKILIVLGLSNCKIADSGLAYLKDLKNLKVLSLDSTPIT 1440

Query: 386  DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
            D G  +L   K L++LE+    +T  G+  ++
Sbjct: 1441 DEGLKHLSGLKMLQTLELQKTKVTPQGIASLQ 1472



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 63/198 (31%), Positives = 102/198 (51%), Gaps = 1/198 (0%)

Query: 232  YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
            +L+L    + DD  ++ + + +L  LNL    ++D  L +LK +  L  ++L    I D+
Sbjct: 1264 FLDLKGTSVKDDDLKRLAGLKTLPKLNLENTLVSDTGLQYLKDIP-LNYISLIGTQITDK 1322

Query: 292  GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
            G   L+ + +L  L +  T + +SG+  L  +  LE ++ + T I    L  L  L +LK
Sbjct: 1323 GFGYLSNMPSLTTLYVGSTAISNSGVEQLKDMKQLEKLSFTNTQIDGVGLGHLKDLKNLK 1382

Query: 352  SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
             L L++  I+D  L  L  L  L  L L   +I DSG AYL++ KNL+ L +    +TD 
Sbjct: 1383 ILGLESTSISDVDLQHLHGLKILIVLGLSNCKIADSGLAYLKDLKNLKVLSLDSTPITDE 1442

Query: 412  GVKHIKDLSSLTLLNLSQ 429
            G+KH+  L  L  L L +
Sbjct: 1443 GLKHLSGLKMLQTLELQK 1460



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 64/215 (29%), Positives = 107/215 (49%), Gaps = 2/215 (0%)

Query: 254  LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
            +  L+L    + D+ L  L GL  L  LNL++  + D GL  L  +  L  + L  TQ+ 
Sbjct: 1262 INFLDLKGTSVKDDDLKRLAGLKTLPKLNLENTLVSDTGLQYLKDI-PLNYISLIGTQIT 1320

Query: 314  SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
              G  +LS + +L ++ +  T IS+  + +L  +  L+ L+    QI   GL  L  L  
Sbjct: 1321 DKGFGYLSNMPSLTTLYVGSTAISNSGVEQLKDMKQLEKLSFTNTQIDGVGLGHLKDLKN 1380

Query: 374  LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
            L  L L    I+D    +L   K L  L +    + D+G+ ++KDL +L +L+L     +
Sbjct: 1381 LKILGLESTSISDVDLQHLHGLKILIVLGLSNCKIADSGLAYLKDLKNLKVLSLDST-PI 1439

Query: 434  TDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHA 468
            TD+ L+ +SGL  L +L +  +++T  G+  L  A
Sbjct: 1440 TDEGLKHLSGLKMLQTLELQKTKVTPQGIASLQKA 1474


>gi|149176715|ref|ZP_01855326.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
 gi|148844356|gb|EDL58708.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
          Length = 1266

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 139/431 (32%), Positives = 216/431 (50%), Gaps = 28/431 (6%)

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           S+   G+ + D+ + HLK    L+S+ F     I+D    HL GLS L +L      AIT
Sbjct: 433 SIRFFGNQIVDAQVKHLKHVPRLKSVSF-ISTSITDDCTRHLSGLSELETLQLP-GTAIT 490

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
            +G+     L +L  LDL R      GLV+LK   +L++LN+     +TD+ +  L  L 
Sbjct: 491 DKGLATLNDLKSLENLDLSRSGITDAGLVSLKKFPQLKTLNL-GSTRVTDAGLTHLKALP 549

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
            L+SL++  + VT +G++ L  L KL  L+L   P+T   L ++S L  L  L+L + ++
Sbjct: 550 KLESLKLYNTSVTGTGLSELVTLPKLKTLDLSLTPLTETGLQTVSKLIHLQSLSLTKTKI 609

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           +  G +    +  L  L L + +I D  L  +  LT L SLNL    I D G+V+L  L 
Sbjct: 610 NSAGVKHLVPLTELTTLKLDYTQIDDTALASIAKLTKLRSLNLRKTEITDTGMVHLENLK 669

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            LK L L +T+V ++GL+ L  L  L  + L  T I D  L+ L+ + +LKSL+L   ++
Sbjct: 670 PLKVLSLDETRVSNAGLKSLQSLQQLYRLGLRETDIDDAGLKTLSSIFNLKSLDLYGTKV 729

Query: 361 TDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI--- 416
           TDTG+A     L   T L+L G  +T++G A L+  +   +  I      D+G++ I   
Sbjct: 730 TDTGMAYFHDKLIKPTDLNLHGTGVTEAGVAMLK--QQCPNCRIQASPPLDSGIQSILAK 787

Query: 417 --KDLSSLTLLNLSQNC-----------------NLTDKTLELISGLTGLVSLNVSNSRI 457
             K     T   L +N                  +  D+ L L++GL  L  L+V+ + +
Sbjct: 788 LKKSGGFYTRRRLPENAEQLVVRFYPLPGREKKLSPLDERLSLLNGLKTLYELDVAGADL 847

Query: 458 TSAGLRHLNHA 468
           T AGL+HL H 
Sbjct: 848 TDAGLKHLKHV 858



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 145/470 (30%), Positives = 227/470 (48%), Gaps = 48/470 (10%)

Query: 42  PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
           P ++DK +  +    S L S+ L+ + V+D GL  L +   L SL       I+D  L H
Sbjct: 272 PHIDDKSLACLKGL-SGLKSLTLNQTSVSDQGLQILNELKGLTSLTI-MQSPITDAALPH 329

Query: 102 LRGLSNLTSLSFRR-----------------------NNAITAQGMKAFAGLINLVKLDL 138
           L GLS LTSL+  R                       +  +T+ GM      +   K++ 
Sbjct: 330 LTGLSRLTSLNLARTAVTDAGMEHIIKLKQLKKLNLISTGVTSAGMARVHAALPKCKIET 389

Query: 139 ERCT--------------------RIHGGLVNLKGLMKLESL-NIKWC-NCITDSDMKPL 176
            + T                     I    V   G +  E   +I++  N I D+ +K L
Sbjct: 390 GKATAPGDSTQAQAAIAALKAQGAHIQNQRVFKNGKLTSEYFTSIRFFGNQIVDAQVKHL 449

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
             +  LKS+    + +TD    +L GL +L  L L G  +T   L +L+ L SL  L+L+
Sbjct: 450 KHVPRLKSVSFISTSITDDCTRHLSGLSELETLQLPGTAITDKGLATLNDLKSLENLDLS 509

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
           R  ++D G     K   LK LNLG   +TD  L HLK L  LESL L +  +   GL  L
Sbjct: 510 RSGITDAGLVSLKKFPQLKTLNLGSTRVTDAGLTHLKALPKLESLKLYNTSVTGTGLSEL 569

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
             L  LK L+LS T +  +GL+ +S L +L+S++L+ T I+   ++ L  L+ L +L LD
Sbjct: 570 VTLPKLKTLDLSLTPLTETGLQTVSKLIHLQSLSLTKTKINSAGVKHLVPLTELTTLKLD 629

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
             QI DT LA++  LT L  L+L    ITD+G  +L N K L+ L +    +++AG+K +
Sbjct: 630 YTQIDDTALASIAKLTKLRSLNLRKTEITDTGMVHLENLKPLKVLSLDETRVSNAGLKSL 689

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
           + L  L  L L +  ++ D  L+ +S +  L SL++  +++T  G+ + +
Sbjct: 690 QSLQQLYRLGLRE-TDIDDAGLKTLSSIFNLKSLDLYGTKVTDTGMAYFH 738



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 124/415 (29%), Positives = 194/415 (46%), Gaps = 38/415 (9%)

Query: 41   YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
            Y  ++D  +  IA + + L S++L  +++TD+G++HL++   L+ L  +   ++S+ GL+
Sbjct: 630  YTQIDDTALASIA-KLTKLRSLNLRKTEITDTGMVHLENLKPLKVLSLDET-RVSNAGLK 687

Query: 101  HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK-GLMKLES 159
             L+ L  L  L  R  + I   G+K  + + NL  LDL        G+      L+K   
Sbjct: 688  SLQSLQQLYRLGLRETD-IDDAGLKTLSSIFNLKSLDLYGTKVTDTGMAYFHDKLIKPTD 746

Query: 160  LNIKWCNCITDSDMKPLSGLTNLKSL----QISCSKVTDSGI-AYLKGLQK--------- 205
            LN+              +G+  LK      +I  S   DSGI + L  L+K         
Sbjct: 747  LNLHGTGVTE-------AGVAMLKQQCPNCRIQASPPLDSGIQSILAKLKKSGGFYTRRR 799

Query: 206  ---------LTLLNLEGCPVTAACLDS----LSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
                     +    L G     + LD     L+ L +L+ L++    L+D G +    + 
Sbjct: 800  LPENAEQLVVRFYPLPGREKKLSPLDERLSLLNGLKTLYELDVAGADLTDAGLKHLKHVP 859

Query: 253  SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
             L+VL L     T+E L  L  L  LE L +++ GI ++ L+ L  +  LK   L   Q+
Sbjct: 860  ELRVLKLNGGNFTEEGLKQLTQLKKLEVLQIENAGITNDQLIQLKEMTQLKIFILPQNQI 919

Query: 313  GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
               GL+HLSGLTNL+ +NLS   I    +  LA L +L+SL L+  ++ D GL  L  L 
Sbjct: 920  TEHGLKHLSGLTNLKVLNLSQNRIYSDGMVHLASLENLRSLALEHTRVADQGLEDLLRLP 979

Query: 373  GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
             L  L L G  ITD G   LR   +L  L +    +TD G+K ++ L  L  L+L
Sbjct: 980  RLNTLILDGTTITDGGTPLLRKMTSLGMLSLNSTYITDRGLKDLETLRGLYRLDL 1034



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 147/561 (26%), Positives = 235/561 (41%), Gaps = 121/561 (21%)

Query: 28  FRDCALQDLC---LGQYPGVNDKWMDVIASQGSSLLSVD---------LSGSDVTDSGLI 75
           F++C L+D     L Q+P +   ++  +      L+ +          L  + ++DSGL 
Sbjct: 111 FQNCPLEDDAFQHLKQFPALTHLFVRHVPLTDQCLVHLKDLTQLEVLWLFATQISDSGLE 170

Query: 76  HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA-------------- 121
           HL +   L SL+  +  +IS+ GL HL  L  L  L        +A              
Sbjct: 171 HLNNLKELNSLNL-YQTKISNAGLTHLSELKKLKQLEVNETKVTSAGVAELQEAIPECKI 229

Query: 122 --------------QGMKAFAGLINLVKLDLERC------TRIH---GGLVNLKGLMKLE 158
                         + +K+  G +    LD  R       +R H     L  LKGL  L+
Sbjct: 230 LFDRPVLPAHLKVARQVKSLGGFVRYQDLDQHRLLSSISLSRPHIDDKSLACLKGLSGLK 289

Query: 159 SLNIKWCNC-----------------------ITDSDMKPLSGLTNLKSLQISCSKVTDS 195
           SL +   +                        ITD+ +  L+GL+ L SL ++ + VTD+
Sbjct: 290 SLTLNQTSVSDQGLQILNELKGLTSLTIMQSPITDAALPHLTGLSRLTSLNLARTAVTDA 349

Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSA----------------------------- 226
           G+ ++  L++L  LNL    VT+A +  + A                             
Sbjct: 350 GMEHIIKLKQLKKLNLISTGVTSAGMARVHAALPKCKIETGKATAPGDSTQAQAAIAALK 409

Query: 227 ----------------LGSLFYLNLNRC--QLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
                           L S ++ ++     Q+ D   +    +  LK ++     ITD+C
Sbjct: 410 AQGAHIQNQRVFKNGKLTSEYFTSIRFFGNQIVDAQVKHLKHVPRLKSVSFISTSITDDC 469

Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
             HL GL+ LE+L L    I D+GL  L  L +L+ L+LS + +  +GL  L     L++
Sbjct: 470 TRHLSGLSELETLQLPGTAITDKGLATLNDLKSLENLDLSRSGITDAGLVSLKKFPQLKT 529

Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
           +NL  T ++D  L  L  L  L+SL L    +T TGL+ L +L  L  LDL    +T++G
Sbjct: 530 LNLGSTRVTDAGLTHLKALPKLESLKLYNTSVTGTGLSELVTLPKLKTLDLSLTPLTETG 589

Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
              +    +L+SL +    +  AGVKH+  L+ LT L L     + D  L  I+ LT L 
Sbjct: 590 LQTVSKLIHLQSLSLTKTKINSAGVKHLVPLTELTTLKLDY-TQIDDTALASIAKLTKLR 648

Query: 449 SLNVSNSRITSAGLRHLNHAR 469
           SLN+  + IT  G+ HL + +
Sbjct: 649 SLNLRKTEITDTGMVHLENLK 669



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 135/437 (30%), Positives = 208/437 (47%), Gaps = 34/437 (7%)

Query: 59   LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
            L S+ L+ + +  +G+ HL   + L +L  ++  QI D  L  +  L+ L SL+ R+   
Sbjct: 599  LQSLSLTKTKINSAGVKHLVPLTELTTLKLDYT-QIDDTALASIAKLTKLRSLNLRKTE- 656

Query: 119  ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
            IT  GM     L  L  L L+     + GL +L+ L +L  L ++  + I D+ +K LS 
Sbjct: 657  ITDTGMVHLENLKPLKVLSLDETRVSNAGLKSLQSLQQLYRLGLRETD-IDDAGLKTLSS 715

Query: 179  LTNLKSLQISCSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAA------------------ 219
            + NLKSL +  +KVTD+G+AY    L K T LNL G  VT A                  
Sbjct: 716  IFNLKSLDLYGTKVTDTGMAYFHDKLIKPTDLNLHGTGVTEAGVAMLKQQCPNCRIQASP 775

Query: 220  CLDS--LSALGSL-----FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
             LDS   S L  L     FY    R +L ++  +   +   L       + + DE L  L
Sbjct: 776  PLDSGIQSILAKLKKSGGFY---TRRRLPENAEQLVVRFYPLPGREKKLSPL-DERLSLL 831

Query: 273  KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
             GL  L  L++    + D GL +L  +  L+ L+L+       GL+ L+ L  LE + + 
Sbjct: 832  NGLKTLYELDVAGADLTDAGLKHLKHVPELRVLKLNGGNFTEEGLKQLTQLKKLEVLQIE 891

Query: 333  FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
              GI++  L +L  ++ LK   L   QIT+ GL  L+ LT L  L+L   RI   G  +L
Sbjct: 892  NAGITNDQLIQLKEMTQLKIFILPQNQITEHGLKHLSGLTNLKVLNLSQNRIYSDGMVHL 951

Query: 393  RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
             + +NLRSL +    + D G++ +  L  L  L L     +TD    L+  +T L  L++
Sbjct: 952  ASLENLRSLALEHTRVADQGLEDLLRLPRLNTLILD-GTTITDGGTPLLRKMTSLGMLSL 1010

Query: 453  SNSRITSAGLRHLNHAR 469
            +++ IT  GL+ L   R
Sbjct: 1011 NSTYITDRGLKDLETLR 1027



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 133/288 (46%), Gaps = 38/288 (13%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N ITD+ +K ++ L +++ L     K++ SG+  L  L+ L  L  + CP+       L 
Sbjct: 66  NKITDTQIKFINHLKDIRKLGFYNVKISGSGLQSLTNLKHLQNLEFQNCPLEDDAFQHLK 125

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
              +L +L +    L+D        +  L+VL L   +I+D  L HL  L  L SLNL  
Sbjct: 126 QFPALTHLFVRHVPLTDQCLVHLKDLTQLEVLWLFATQISDSGLEHLNNLKELNSLNLYQ 185

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSG----------------------------- 316
             I + GL +L+ L  LK LE+++T+V S+G                             
Sbjct: 186 TKISNAGLTHLSELKKLKQLEVNETKVTSAGVAELQEAIPECKILFDRPVLPAHLKVARQ 245

Query: 317 LRHLSGLTN---------LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
           ++ L G            L SI+LS   I D SL  L GLS LKSL L+   ++D GL  
Sbjct: 246 VKSLGGFVRYQDLDQHRLLSSISLSRPHIDDKSLACLKGLSGLKSLTLNQTSVSDQGLQI 305

Query: 368 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
           L  L GLT L +  + ITD+   +L     L SL +    +TDAG++H
Sbjct: 306 LNELKGLTSLTIMQSPITDAALPHLTGLSRLTSLNLARTAVTDAGMEH 353



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 151/326 (46%), Gaps = 39/326 (11%)

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
            + S+  + +K+TD+ I ++  L+ +  L      ++ + L SL+ L  L  L    C L
Sbjct: 57  KIDSVSFTNNKITDTQIKFINHLKDIRKLGFYNVKISGSGLQSLTNLKHLQNLEFQNCPL 116

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
            DD  +   +  +L  L +    +TD+CLVHLK LT LE L L +  I D GL +L  L 
Sbjct: 117 EDDAFQHLKQFPALTHLFVRHVPLTDQCLVHLKDLTQLEVLWLFATQISDSGLEHLNNLK 176

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG--------------------- 339
            L  L L  T++ ++GL HLS L  L+ + ++ T ++                       
Sbjct: 177 ELNSLNLYQTKISNAGLTHLSELKKLKQLEVNETKVTSAGVAELQEAIPECKILFDRPVL 236

Query: 340 --------SLRKLAGLSS---------LKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
                    ++ L G            L S++L    I D  LA L  L+GL  L L   
Sbjct: 237 PAHLKVARQVKSLGGFVRYQDLDQHRLLSSISLSRPHIDDKSLACLKGLSGLKSLTLNQT 296

Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
            ++D G   L   K L SL I    +TDA + H+  LS LT LNL++   +TD  +E I 
Sbjct: 297 SVSDQGLQILNELKGLTSLTIMQSPITDAALPHLTGLSRLTSLNLARTA-VTDAGMEHII 355

Query: 443 GLTGLVSLNVSNSRITSAGLRHLNHA 468
            L  L  LN+ ++ +TSAG+  ++ A
Sbjct: 356 KLKQLKKLNLISTGVTSAGMARVHAA 381



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 124/444 (27%), Positives = 200/444 (45%), Gaps = 67/444 (15%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           ++ SGL  L +  +LQ+L+F  C  + D   +HL+    LT L F R+  +T Q +    
Sbjct: 92  ISGSGLQSLTNLKHLQNLEFQNC-PLEDDAFQHLKQFPALTHL-FVRHVPLTDQCLVHLK 149

Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
            L  L  L L        GL +L  L +L SLN+ +   I+++ +  LS L  LK L+++
Sbjct: 150 DLTQLEVLWLFATQISDSGLEHLNNLKELNSLNL-YQTKISNAGLTHLSELKKLKQLEVN 208

Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
            +KVT +G+A L+          E  P      D    L +  +L + R   S  G  ++
Sbjct: 209 ETKVTSAGVAELQ----------EAIPECKILFDR-PVLPA--HLKVARQVKSLGGFVRY 255

Query: 249 SKIGSLKVL---NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
             +   ++L   +L    I D+ L  LKGL+ L+SL L+   + D+GL  L  L  L  L
Sbjct: 256 QDLDQHRLLSSISLSRPHIDDKSLACLKGLSGLKSLTLNQTSVSDQGLQILNELKGLTSL 315

Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
            +  + +  + L HL+GL+ L S+NL+ T ++D  +  +  L  LK LNL +  +T  G+
Sbjct: 316 TIMQSPITDAALPHLTGLSRLTSLNLARTAVTDAGMEHIIKLKQLKKLNLISTGVTSAGM 375

Query: 366 AALTSL-------TG----------------------------------------LTHLD 378
           A + +        TG                                         T + 
Sbjct: 376 ARVHAALPKCKIETGKATAPGDSTQAQAAIAALKAQGAHIQNQRVFKNGKLTSEYFTSIR 435

Query: 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
            FG +I D+   +L++   L+S+      +TD   +H+  LS L  L L     +TDK L
Sbjct: 436 FFGNQIVDAQVKHLKHVPRLKSVSFISTSITDDCTRHLSGLSELETLQLPGTA-ITDKGL 494

Query: 439 ELISGLTGLVSLNVSNSRITSAGL 462
             ++ L  L +L++S S IT AGL
Sbjct: 495 ATLNDLKSLENLDLSRSGITDAGL 518



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 168/367 (45%), Gaps = 54/367 (14%)

Query: 151  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
            L GL  L  L++   + +TD+ +K L  +  L+ L+++    T+ G+  L  L+KL +L 
Sbjct: 831  LNGLKTLYELDVAGAD-LTDAGLKHLKHVPELRVLKLNGGNFTEEGLKQLTQLKKLEVLQ 889

Query: 211  LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
            +E   +T   L  L  +  L    L + Q+++ G +  S + +LKVLNL  N I  + +V
Sbjct: 890  IENAGITNDQLIQLKEMTQLKIFILPQNQITEHGLKHLSGLTNLKVLNLSQNRIYSDGMV 949

Query: 271  HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
            HL  L NL SL L+   + D+GL +L  L  L  L L  T +   G   L  +T+L  ++
Sbjct: 950  HLASLENLRSLALEHTRVADQGLEDLLRLPRLNTLILDGTTITDGGTPLLRKMTSLGMLS 1009

Query: 331  LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA------------------------ 366
            L+ T I+D  L+ L  L  L  L+L+  ++++ G+                         
Sbjct: 1010 LNSTYITDRGLKDLETLRGLYRLDLNDTKVSEDGVKNFQRSQPKCNIEYAAPLASSLQYV 1069

Query: 367  --------------------ALTSLTGLTHLD-LFG-------ARITDSGAAYLRNFKNL 398
                                 + S+    HL  +F        A++ DS    +   K+L
Sbjct: 1070 IQELKEAGANVNVINQGHHYVIESVEFPNHLQGIFAIHNRAEKAKVFDSCLKRISEMKDL 1129

Query: 399  RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
            + L +      +  +++IK+L+ L+ L+LS    + D+ ++ + GL  L  L + +++IT
Sbjct: 1130 KRLSMHWAEFDNTKLEYIKNLTYLSELDLS-GSRIPDQGIKDLKGLVNLQKLKLEHTQIT 1188

Query: 459  SAGLRHL 465
             AG+  L
Sbjct: 1189 DAGVAQL 1195



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 115/465 (24%), Positives = 191/465 (41%), Gaps = 106/465 (22%)

Query: 58   SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
            +L  +D++G+D+TD+GL HLK    L+ L         +GG        N T        
Sbjct: 836  TLYELDVAGADLTDAGLKHLKHVPELRVLKL-------NGG--------NFTE------- 873

Query: 118  AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
                                         GL  L  L KLE L I+    IT+  +  L 
Sbjct: 874  ----------------------------EGLKQLTQLKKLEVLQIENAG-ITNDQLIQLK 904

Query: 178  GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
             +T LK   +  +++T+ G+ +L GL  L +LNL    + +  +  L++L +L  L L  
Sbjct: 905  EMTQLKIFILPQNQITEHGLKHLSGLTNLKVLNLSQNRIYSDGMVHLASLENLRSLALEH 964

Query: 238  CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
             +++D G E   ++  L  L L    ITD     L+ +T+L  L+L+S  I D GL +L 
Sbjct: 965  TRVADQGLEDLLRLPRLNTLILDGTTITDGGTPLLRKMTSLGMLSLNSTYITDRGLKDLE 1024

Query: 298  GLCNLKCLELSDTQVGSSGLR--------------------------------------- 318
             L  L  L+L+DT+V   G++                                       
Sbjct: 1025 TLRGLYRLDLNDTKVSEDGVKNFQRSQPKCNIEYAAPLASSLQYVIQELKEAGANVNVIN 1084

Query: 319  --------------HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
                          HL G+  + +       + D  L++++ +  LK L++   +  +T 
Sbjct: 1085 QGHHYVIESVEFPNHLQGIFAIHN-RAEKAKVFDSCLKRISEMKDLKRLSMHWAEFDNTK 1143

Query: 365  LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
            L  + +LT L+ LDL G+RI D G   L+   NL+ L++    +TDAGV  +  L    L
Sbjct: 1144 LEYIKNLTYLSELDLSGSRIPDQGIKDLKGLVNLQKLKLEHTQITDAGVAQLAQLQLNRL 1203

Query: 425  LNLS-QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHA 468
             +L   +   T   LE +  +  L  L++ +  +++A L     A
Sbjct: 1204 YSLDLDHSKTTAACLESLKDMQRLRFLSLQHLELSAADLEKFKQA 1248



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 124/294 (42%), Gaps = 66/294 (22%)

Query: 20   LTEVSLEAFR--DCALQDLCLGQYPGVNDKWMD--VIASQGSSLLS-------VDLSGSD 68
            L  ++LE  R  D  L+DL   + P +N   +D   I   G+ LL        + L+ + 
Sbjct: 957  LRSLALEHTRVADQGLEDLL--RLPRLNTLILDGTTITDGGTPLLRKMTSLGMLSLNSTY 1014

Query: 69   VTDSGLIHLKDCSNLQSLDFN--------------------------------FCIQ-IS 95
            +TD GL  L+    L  LD N                                + IQ + 
Sbjct: 1015 ITDRGLKDLETLRGLYRLDLNDTKVSEDGVKNFQRSQPKCNIEYAAPLASSLQYVIQELK 1074

Query: 96   DGG-------------LEHLRGLSNLTSLSFRRNNAITAQG----MKAFAGLINLVKLDL 138
            + G             +E +   ++L  +    N A  A+     +K  + + +L +L +
Sbjct: 1075 EAGANVNVINQGHHYVIESVEFPNHLQGIFAIHNRAEKAKVFDSCLKRISEMKDLKRLSM 1134

Query: 139  ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
                  +  L  +K L  L  L++     I D  +K L GL NL+ L++  +++TD+G+A
Sbjct: 1135 HWAEFDNTKLEYIKNLTYLSELDLSGSR-IPDQGIKDLKGLVNLQKLKLEHTQITDAGVA 1193

Query: 199  YLKGLQ--KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
             L  LQ  +L  L+L+    TAACL+SL  +  L +L+L   +LS    EKF +
Sbjct: 1194 QLAQLQLNRLYSLDLDHSKTTAACLESLKDMQRLRFLSLQHLELSAADLEKFKQ 1247


>gi|149174587|ref|ZP_01853213.1| hypothetical protein PM8797T_09949 [Planctomyces maris DSM 8797]
 gi|148846697|gb|EDL61034.1| hypothetical protein PM8797T_09949 [Planctomyces maris DSM 8797]
          Length = 540

 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 124/350 (35%), Positives = 182/350 (52%), Gaps = 43/350 (12%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFN--------------------------- 89
           S L  ++L G+ +  +GL++LK  ++L+ LD +                           
Sbjct: 181 SELRVLELEGTQLDGTGLVYLKHLNHLEELDLDNYNNNFVGWNDGESENEPRPQIRDAGL 240

Query: 90  --------------FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
                         F  +ISD GL HL+ L  L SL F R N I+ +G+    GL+NL  
Sbjct: 241 KHIGKLKHLKKLSLFGAEISDVGLAHLQDLKKLESLEFAREN-ISDKGVAHLKGLLNLTS 299

Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
           L L+       GLV+L  L KL+SL++     I+D+ +  L  LT+LKSL +S + V+D 
Sbjct: 300 LRLDGSRVSDAGLVHLAKLQKLQSLDLG-NTSISDTGLIHLQELTSLKSLDLSDTAVSDD 358

Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
           G+ +L  LQ L  L L    ++   L SL  L  L YL++   +++D G    +++GSL 
Sbjct: 359 GLIHLSRLQNLESLYLRSTNLSGVGLSSLKNLSMLQYLDMGYSKMNDQGLIAVAELGSLD 418

Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
            L L    ITD+ LVHL GLTNL+ L+L    I D GLV+L+ L  LK L+L  T++  +
Sbjct: 419 SLGLFATPITDQGLVHLSGLTNLKKLDLQETSISDAGLVHLSHLAGLKVLDLEGTRITDA 478

Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
           GL HL GL  LE + L  T +SD  L+ L GL+ L+ L  +  QIT+ G+
Sbjct: 479 GLIHLQGLNELEQLELDKTAVSDAGLKHLKGLTKLQFLQYEETQITEAGI 528



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 134/383 (34%), Positives = 198/383 (51%), Gaps = 19/383 (4%)

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
           L G+ +TDS L ++    NLQ L+ N    ISD GL HLRGLS L  L       +   G
Sbjct: 140 LRGTTITDSDLKYVGALKNLQKLNLN-NTAISDAGLAHLRGLSELRVLELE-GTQLDGTG 197

Query: 124 MKAFAGLINLVKLDL-----------------ERCTRIHGGLVNLKGLMKLESLNIKWCN 166
           +     L +L +LDL                 E   +I    +   G +K       +  
Sbjct: 198 LVYLKHLNHLEELDLDNYNNNFVGWNDGESENEPRPQIRDAGLKHIGKLKHLKKLSLFGA 257

Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
            I+D  +  L  L  L+SL+ +   ++D G+A+LKGL  LT L L+G  V+ A L  L+ 
Sbjct: 258 EISDVGLAHLQDLKKLESLEFARENISDKGVAHLKGLLNLTSLRLDGSRVSDAGLVHLAK 317

Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
           L  L  L+L    +SD G     ++ SLK L+L    ++D+ L+HL  L NLESL L S 
Sbjct: 318 LQKLQSLDLGNTSISDTGLIHLQELTSLKSLDLSDTAVSDDGLIHLSRLQNLESLYLRST 377

Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
            +   GL +L  L  L+ L++  +++   GL  ++ L +L+S+ L  T I+D  L  L+G
Sbjct: 378 NLSGVGLSSLKNLSMLQYLDMGYSKMNDQGLIAVAELGSLDSLGLFATPITDQGLVHLSG 437

Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
           L++LK L+L    I+D GL  L+ L GL  LDL G RITD+G  +L+    L  LE+   
Sbjct: 438 LTNLKKLDLQETSISDAGLVHLSHLAGLKVLDLEGTRITDAGLIHLQGLNELEQLELDKT 497

Query: 407 GLTDAGVKHIKDLSSLTLLNLSQ 429
            ++DAG+KH+K L+ L  L   +
Sbjct: 498 AVSDAGLKHLKGLTKLQFLQYEE 520



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 136/423 (32%), Positives = 210/423 (49%), Gaps = 20/423 (4%)

Query: 60  LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
           + +D    ++++   I +    NL+S+       I +GG +H+ GL NL  LS R    I
Sbjct: 88  VELDFEFGELSEEDFIAISQLKNLKSIHL-LITTIEEGGRKHITGLQNLELLSLR-GTTI 145

Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI-------------KWCN 166
           T   +K    L NL KL+L        GL +L+GL +L  L +             K  N
Sbjct: 146 TDSDLKYVGALKNLQKLNLNNTAISDAGLAHLRGLSELRVLELEGTQLDGTGLVYLKHLN 205

Query: 167 CITDSDMKPLS----GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
            + + D+   +    G  + +S      ++ D+G+ ++  L+ L  L+L G  ++   L 
Sbjct: 206 HLEELDLDNYNNNFVGWNDGESENEPRPQIRDAGLKHIGKLKHLKKLSLFGAEISDVGLA 265

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
            L  L  L  L   R  +SD G      + +L  L L  + ++D  LVHL  L  L+SL+
Sbjct: 266 HLQDLKKLESLEFARENISDKGVAHLKGLLNLTSLRLDGSRVSDAGLVHLAKLQKLQSLD 325

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
           L +  I D GL++L  L +LK L+LSDT V   GL HLS L NLES+ L  T +S   L 
Sbjct: 326 LGNTSISDTGLIHLQELTSLKSLDLSDTAVSDDGLIHLSRLQNLESLYLRSTNLSGVGLS 385

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
            L  LS L+ L++   ++ D GL A+  L  L  L LF   ITD G  +L    NL+ L+
Sbjct: 386 SLKNLSMLQYLDMGYSKMNDQGLIAVAELGSLDSLGLFATPITDQGLVHLSGLTNLKKLD 445

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
           +    ++DAG+ H+  L+ L +L+L +   +TD  L  + GL  L  L +  + ++ AGL
Sbjct: 446 LQETSISDAGLVHLSHLAGLKVLDL-EGTRITDAGLIHLQGLNELEQLELDKTAVSDAGL 504

Query: 463 RHL 465
           +HL
Sbjct: 505 KHL 507



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 132/411 (32%), Positives = 210/411 (51%), Gaps = 45/411 (10%)

Query: 98  GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
           G E   G      L F     ++ +   A + L NL  + L   T   GG  ++ GL  L
Sbjct: 77  GEEKFLGFMTAVELDFEFGE-LSEEDFIAISQLKNLKSIHLLITTIEEGGRKHITGLQNL 135

Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
           E L+++    ITDSD+K +  L NL+ L ++ + ++D+G+A+L+GL +L +L LEG  + 
Sbjct: 136 ELLSLR-GTTITDSDLKYVGALKNLQKLNLNNTAISDAGLAHLRGLSELRVLELEGTQLD 194

Query: 218 AACLDSLSALGSLFYLNLN------------------RCQLSDDGCE------------- 246
              L  L  L  L  L+L+                  R Q+ D G +             
Sbjct: 195 GTGLVYLKHLNHLEELDLDNYNNNFVGWNDGESENEPRPQIRDAGLKHIGKLKHLKKLSL 254

Query: 247 ---KFSKIG--------SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
              + S +G         L+ L      I+D+ + HLKGL NL SL LD   + D GLV+
Sbjct: 255 FGAEISDVGLAHLQDLKKLESLEFARENISDKGVAHLKGLLNLTSLRLDGSRVSDAGLVH 314

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           L  L  L+ L+L +T +  +GL HL  LT+L+S++LS T +SD  L  L+ L +L+SL L
Sbjct: 315 LAKLQKLQSLDLGNTSISDTGLIHLQELTSLKSLDLSDTAVSDDGLIHLSRLQNLESLYL 374

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
            +  ++  GL++L +L+ L +LD+  +++ D G   +    +L SL +    +TD G+ H
Sbjct: 375 RSTNLSGVGLSSLKNLSMLQYLDMGYSKMNDQGLIAVAELGSLDSLGLFATPITDQGLVH 434

Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
           +  L++L  L+L Q  +++D  L  +S L GL  L++  +RIT AGL HL 
Sbjct: 435 LSGLTNLKKLDL-QETSISDAGLVHLSHLAGLKVLDLEGTRITDAGLIHLQ 484



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 110/360 (30%), Positives = 182/360 (50%), Gaps = 17/360 (4%)

Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLESLNIKWC 165
           +  L  R  N  T +G       I +  + LE   R++   G     G M    L+ ++ 
Sbjct: 43  IRQLEERYINVYTEEG-------ILMRNVPLEWQYRLYDIFGEEKFLGFMTAVELDFEFG 95

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
             +++ D   +S L NLKS+ +  + + + G  ++ GLQ L LL+L G  +T + L  + 
Sbjct: 96  E-LSEEDFIAISQLKNLKSIHLLITTIEEGGRKHITGLQNLELLSLRGTTITDSDLKYVG 154

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
           AL +L  LNLN   +SD G      +  L+VL L   ++    LV+LK L +LE L+LD+
Sbjct: 155 ALKNLQKLNLNNTAISDAGLAHLRGLSELRVLELEGTQLDGTGLVYLKHLNHLEELDLDN 214

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
                    N  G  + +       Q+  +GL+H+  L +L+ ++L    ISD  L  L 
Sbjct: 215 YN------NNFVGWNDGESENEPRPQIRDAGLKHIGKLKHLKKLSLFGAEISDVGLAHLQ 268

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
            L  L+SL      I+D G+A L  L  LT L L G+R++D+G  +L   + L+SL++  
Sbjct: 269 DLKKLESLEFARENISDKGVAHLKGLLNLTSLRLDGSRVSDAGLVHLAKLQKLQSLDLGN 328

Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
             ++D G+ H+++L+SL  L+LS    ++D  L  +S L  L SL + ++ ++  GL  L
Sbjct: 329 TSISDTGLIHLQELTSLKSLDLSDTA-VSDDGLIHLSRLQNLESLYLRSTNLSGVGLSSL 387



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 99/192 (51%), Gaps = 32/192 (16%)

Query: 13  ELVYSRC--LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDV 69
           E +Y R   L+ V L + ++ + LQ L +G Y  +ND+ +  +A  GS L S+ L  + +
Sbjct: 370 ESLYLRSTNLSGVGLSSLKNLSMLQYLDMG-YSKMNDQGLIAVAELGS-LDSLGLFATPI 427

Query: 70  TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
           TD GL+HL   +NL+ LD      ISD GL HL  L+                G+K    
Sbjct: 428 TDQGLVHLSGLTNLKKLDLQET-SISDAGLVHLSHLA----------------GLKV--- 467

Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
                 LDLE       GL++L+GL +LE L +     ++D+ +K L GLT L+ LQ   
Sbjct: 468 ------LDLEGTRITDAGLIHLQGLNELEQLELD-KTAVSDAGLKHLKGLTKLQFLQYEE 520

Query: 190 SKVTDSGIAYLK 201
           +++T++GI  L+
Sbjct: 521 TQITEAGINDLR 532


>gi|46447588|ref|YP_008953.1| hypothetical protein pc1954 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401229|emb|CAF24678.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 704

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 151/419 (36%), Positives = 228/419 (54%), Gaps = 13/419 (3%)

Query: 57  SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
           + L  ++LSG   +TD+GL HL   + LQ LD   C  ++  GL HL+ L  L  L    
Sbjct: 269 TGLQHLNLSGCYHLTDTGLAHLTPLTGLQHLDLRICEYLTATGLAHLKPLKALQHLDLSY 328

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
              +T  G+   A L  L  LDL  C ++   GLV L  L  L+ L++   + +TD+ + 
Sbjct: 329 CKNLTNVGLSHLAPLTALQHLDLSYCWQLADAGLVYLTPLTGLQHLDLSGYHKLTDAGLA 388

Query: 175 PLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFY 232
            L+ LT L+ L +S C  +TD G+A+L  L+ L  LNL  C  +T   L  L+ L +L +
Sbjct: 389 HLTPLTALQCLDLSYCENLTDVGLAHLMPLKALQHLNLRNCRNLTDDGLAHLAPLTALQH 448

Query: 233 LNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIG 289
           L+L+ C QL+D G    + +  L+ L+L + E +TD  L HL  L  L+ LNL +C  + 
Sbjct: 449 LDLSYCWQLTDAGLAHLTPLTGLQRLDLSYCENLTDVGLAHLIPLKALQHLNLRNCRNLT 508

Query: 290 DEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGL 347
           D+GLV+L  L  L+ L+LSD   +  +GL HL+ LT L+ ++L +   ++   L  LA L
Sbjct: 509 DDGLVHLAPLTALQHLDLSDCNNLTDAGLAHLTPLTALQHLDLKYCINLTGAGLAHLAFL 568

Query: 348 SSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLE-IC 404
           + L+ L+L   + + D GL  L  LT L +L L +   +TD G A+LR+   L+ L  I 
Sbjct: 569 TGLQYLDLSWCKNLIDAGLVHLKLLTALQYLGLSYCENLTDDGLAHLRSLTALQHLALIH 628

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGL 462
              LTDAG+ H++ L+SL  L+L    NLT   L  +  LT L  L ++  + +T  GL
Sbjct: 629 YKNLTDAGLVHLRSLTSLQHLDLRYCQNLTGDGLAHLRTLTALQYLALTQYKNLTDDGL 687



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 155/453 (34%), Positives = 235/453 (51%), Gaps = 38/453 (8%)

Query: 51  VIASQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT 109
           +I      + +++ S +D +TD+ L+ L++C NL+ L  N C  I+D GL HL  L+ L 
Sbjct: 188 IIIPFSKEIEALNFSNNDYLTDAHLLTLRNCENLKVLHLNACQAITDDGLAHLTPLTGLQ 247

Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI------------------------- 144
            L  R    +T  G+     L  L  L+L  C  +                         
Sbjct: 248 HLDIRVCEYLTDDGLAYLTSLTGLQHLNLSGCYHLTDTGLAHLTPLTGLQHLDLRICEYL 307

Query: 145 -HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKG 202
              GL +LK L  L+ L++ +C  +T+  +  L+ LT L+ L +S C ++ D+G+ YL  
Sbjct: 308 TATGLAHLKPLKALQHLDLSYCKNLTNVGLSHLAPLTALQHLDLSYCWQLADAGLVYLTP 367

Query: 203 LQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL- 259
           L  L  L+L G   +T A L  L+ L +L  L+L+ C+ L+D G      + +L+ LNL 
Sbjct: 368 LTGLQHLDLSGYHKLTDAGLAHLTPLTALQCLDLSYCENLTDVGLAHLMPLKALQHLNLR 427

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGL 317
               +TD+ L HL  LT L+ L+L  C  + D GL +LT L  L+ L+LS  + +   GL
Sbjct: 428 NCRNLTDDGLAHLAPLTALQHLDLSYCWQLTDAGLAHLTPLTGLQRLDLSYCENLTDVGL 487

Query: 318 RHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLT 375
            HL  L  L+ +NL +   ++D  L  LA L++L+ L+L D   +TD GLA LT LT L 
Sbjct: 488 AHLIPLKALQHLNLRNCRNLTDDGLVHLAPLTALQHLDLSDCNNLTDAGLAHLTPLTALQ 547

Query: 376 HLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
           HLDL +   +T +G A+L     L+ L++     L DAG+ H+K L++L  L LS   NL
Sbjct: 548 HLDLKYCINLTGAGLAHLAFLTGLQYLDLSWCKNLIDAGLVHLKLLTALQYLGLSYCENL 607

Query: 434 TDKTLELISGLTGLVSLNVSNSR-ITSAGLRHL 465
           TD  L  +  LT L  L + + + +T AGL HL
Sbjct: 608 TDDGLAHLRSLTALQHLALIHYKNLTDAGLVHL 640



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 143/409 (34%), Positives = 221/409 (54%), Gaps = 12/409 (2%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           +TD GL +L   + LQ L+ + C  ++D GL HL  L+ L  L  R    +TA G+    
Sbjct: 257 LTDDGLAYLTSLTGLQHLNLSGCYHLTDTGLAHLTPLTGLQHLDLRICEYLTATGLAHLK 316

Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
            L  L  LDL  C  + + GL +L  L  L+ L++ +C  + D+ +  L+ LT L+ L +
Sbjct: 317 PLKALQHLDLSYCKNLTNVGLSHLAPLTALQHLDLSYCWQLADAGLVYLTPLTGLQHLDL 376

Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
           S   K+TD+G+A+L  L  L  L+L  C  +T   L  L  L +L +LNL  C+ L+DDG
Sbjct: 377 SGYHKLTDAGLAHLTPLTALQCLDLSYCENLTDVGLAHLMPLKALQHLNLRNCRNLTDDG 436

Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 302
               + + +L+ L+L +  ++TD  L HL  LT L+ L+L  C  + D GL +L  L  L
Sbjct: 437 LAHLAPLTALQHLDLSYCWQLTDAGLAHLTPLTGLQRLDLSYCENLTDVGLAHLIPLKAL 496

Query: 303 KCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQ 359
           + L L + + +   GL HL+ LT L+ ++LS    ++D  L  L  L++L+ L+L     
Sbjct: 497 QHLNLRNCRNLTDDGLVHLAPLTALQHLDLSDCNNLTDAGLAHLTPLTALQHLDLKYCIN 556

Query: 360 ITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIK 417
           +T  GLA L  LTGL +LDL +   + D+G  +L+    L+ L +     LTD G+ H++
Sbjct: 557 LTGAGLAHLAFLTGLQYLDLSWCKNLIDAGLVHLKLLTALQYLGLSYCENLTDDGLAHLR 616

Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHL 465
            L++L  L L    NLTD  L  +  LT L  L++   + +T  GL HL
Sbjct: 617 SLTALQHLALIHYKNLTDAGLVHLRSLTSLQHLDLRYCQNLTGDGLAHL 665



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 126/376 (33%), Positives = 193/376 (51%), Gaps = 12/376 (3%)

Query: 13  ELVYSRCLTEVSLEAFRD-CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVT 70
           +L Y + LT V L       ALQ L L     + D  + V  +  + L  +DLSG   +T
Sbjct: 325 DLSYCKNLTNVGLSHLAPLTALQHLDLSYCWQLADAGL-VYLTPLTGLQHLDLSGYHKLT 383

Query: 71  DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
           D+GL HL   + LQ LD ++C  ++D GL HL  L  L  L+ R    +T  G+   A L
Sbjct: 384 DAGLAHLTPLTALQCLDLSYCENLTDVGLAHLMPLKALQHLNLRNCRNLTDDGLAHLAPL 443

Query: 131 INLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-S 188
             L  LDL  C ++   GL +L  L  L+ L++ +C  +TD  +  L  L  L+ L + +
Sbjct: 444 TALQHLDLSYCWQLTDAGLAHLTPLTGLQRLDLSYCENLTDVGLAHLIPLKALQHLNLRN 503

Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCE 246
           C  +TD G+ +L  L  L  L+L  C  +T A L  L+ L +L +L+L  C  L+  G  
Sbjct: 504 CRNLTDDGLVHLAPLTALQHLDLSDCNNLTDAGLAHLTPLTALQHLDLKYCINLTGAGLA 563

Query: 247 KFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKC 304
             + +  L+ L+L +   + D  LVHLK LT L+ L L  C  + D+GL +L  L  L+ 
Sbjct: 564 HLAFLTGLQYLDLSWCKNLIDAGLVHLKLLTALQYLGLSYCENLTDDGLAHLRSLTALQH 623

Query: 305 LELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQIT 361
           L L   + +  +GL HL  LT+L+ ++L +   ++   L  L  L++L+ L L   + +T
Sbjct: 624 LALIHYKNLTDAGLVHLRSLTSLQHLDLRYCQNLTGDGLAHLRTLTALQYLALTQYKNLT 683

Query: 362 DTGLAALTSLTGLTHL 377
           D GLA   +L   T+L
Sbjct: 684 DDGLARFKTLASSTNL 699


>gi|46446667|ref|YP_008032.1| hypothetical protein pc1033 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400308|emb|CAF23757.1| hypothetical protein pc1033 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 662

 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 145/396 (36%), Positives = 218/396 (55%), Gaps = 13/396 (3%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           +TD+GL HL   + LQ L    C ++++ GL HL  L+ L  L+      +T  G+    
Sbjct: 262 LTDAGLAHLTPLTALQHLGLGQCWRLTNAGLAHLTPLTALQYLNLSEYKNLTDAGLAHLT 321

Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
            L  L  L L  C  +   GL +L  LM L+ L++  C  +TD+ +  L+ LT L+ L +
Sbjct: 322 PLTALQHLGLSGCQNLTDAGLAHLTPLMGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNL 381

Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
           S C+K+TD+G+A+L  L  L  L+L GC  +T A L  L+ L  L +L+L+ CQ L+D G
Sbjct: 382 SRCNKLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLDLSGCQNLTDAG 441

Query: 245 CEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNL 302
               + +  L+ LNL    + TD  L HL  L+ L+ LNL  C  + D GL +LT L  L
Sbjct: 442 LAHLTPLTGLQHLNLCNCRKFTDNGLAHLTPLSVLQHLNLSRCNKLTDVGLAHLTPLTAL 501

Query: 303 KCLELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL-DARQ 359
           + L+LS    +   GL HL+ LT+L+ + L S   ++D  L  L  L+ L+ LNL + + 
Sbjct: 502 QHLDLSSCYNLTDVGLAHLTPLTSLQHLGLISCDKLTDAGLVHLKLLTGLQHLNLSNCKN 561

Query: 360 ITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHI 416
           +TD GLA LT LT L +L L +  ++TD+G A+L +   L+ L++  C   LTDAG+ H+
Sbjct: 562 LTDAGLAHLTPLTALQYLYLNWCRKLTDAGLAHLTSLTALQHLDLRYC-QNLTDAGLAHL 620

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
             L+ L  L+LSQ   LT   L     L   ++L +
Sbjct: 621 TPLTGLRHLDLSQCWRLTKAGLARFKTLAASLNLEI 656



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 152/431 (35%), Positives = 231/431 (53%), Gaps = 12/431 (2%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
           ++D++  +I    + +  ++L    + ++  + LK C NL+ L F  C  ++D GL HL 
Sbjct: 212 LSDEFGRIINHFSNEIKILNLPNKILNNACFLALKSCENLKVLHFKECRHLTDAGLAHLT 271

Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNI 162
            L+ L  L   +   +T  G+     L  L  L+L     +   GL +L  L  L+ L +
Sbjct: 272 PLTALQHLGLGQCWRLTNAGLAHLTPLTALQYLNLSEYKNLTDAGLAHLTPLTALQHLGL 331

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAAC 220
             C  +TD+ +  L+ L  L+ L +S C  +TD+G+A+L  L  L  LNL  C  +T A 
Sbjct: 332 SGCQNLTDAGLAHLTPLMGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLSRCNKLTDAG 391

Query: 221 LDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNL 278
           L  L+ L  L +L+L+ CQ L+D G    + +  L+ L+L G   +TD  L HL  LT L
Sbjct: 392 LAHLTPLTGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLAHLTPLTGL 451

Query: 279 ESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TG 335
           + LNL +C    D GL +LT L  L+ L LS   ++   GL HL+ LT L+ ++LS    
Sbjct: 452 QHLNLCNCRKFTDNGLAHLTPLSVLQHLNLSRCNKLTDVGLAHLTPLTALQHLDLSSCYN 511

Query: 336 ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLR 393
           ++D  L  L  L+SL+ L L    ++TD GL  L  LTGL HL+L   + +TD+G A+L 
Sbjct: 512 LTDVGLAHLTPLTSLQHLGLISCDKLTDAGLVHLKLLTGLQHLNLSNCKNLTDAGLAHLT 571

Query: 394 NFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
               L+ L +     LTDAG+ H+  L++L  L+L    NLTD  L  ++ LTGL  L++
Sbjct: 572 PLTALQYLYLNWCRKLTDAGLAHLTSLTALQHLDLRYCQNLTDAGLAHLTPLTGLRHLDL 631

Query: 453 SN-SRITSAGL 462
           S   R+T AGL
Sbjct: 632 SQCWRLTKAGL 642



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 135/381 (35%), Positives = 200/381 (52%), Gaps = 33/381 (8%)

Query: 32  ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
           ALQ L L +Y  + D  +  +    ++L  + LSG  ++TD+GL HL     LQ LD + 
Sbjct: 300 ALQYLNLSEYKNLTDAGLAHLTPL-TALQHLGLSGCQNLTDAGLAHLTPLMGLQHLDLSG 358

Query: 91  CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
           C  ++D GL HL  L+ L  L+  R N +T  G+     L  L  LDL  C  +   GL 
Sbjct: 359 CQNLTDAGLAHLTPLTGLQHLNLSRCNKLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLA 418

Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTL 208
           +L  L  L+ L++  C  +TD+ +  L+ LT L+ L + +C K TD+G+A+L  L  L  
Sbjct: 419 HLTPLTGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLCNCRKFTDNGLAHLTPLSVLQH 478

Query: 209 LNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEIT 265
           LNL  C  +T   L  L+ L +L +L+L+ C  L+D G    + + SL+ L L   +++T
Sbjct: 479 LNLSRCNKLTDVGLAHLTPLTALQHLDLSSCYNLTDVGLAHLTPLTSLQHLGLISCDKLT 538

Query: 266 DECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGL 323
           D  LVHLK LT L+ LNL +C  + D GL +LT L  L+ L L+   ++  +GL HL+ L
Sbjct: 539 DAGLVHLKLLTGLQHLNLSNCKNLTDAGLAHLTPLTALQYLYLNWCRKLTDAGLAHLTSL 598

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA- 382
           T L+ ++L +                        + +TD GLA LT LTGL HLDL    
Sbjct: 599 TALQHLDLRY-----------------------CQNLTDAGLAHLTPLTGLRHLDLSQCW 635

Query: 383 RITDSGAAYLRNFKNLRSLEI 403
           R+T +G A  +      +LEI
Sbjct: 636 RLTKAGLARFKTLAASLNLEI 656



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 129/326 (39%), Positives = 186/326 (57%), Gaps = 11/326 (3%)

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLL 209
           LK    L+ L+ K C  +TD+ +  L+ LT L+ L +  C ++T++G+A+L  L  L  L
Sbjct: 245 LKSCENLKVLHFKECRHLTDAGLAHLTPLTALQHLGLGQCWRLTNAGLAHLTPLTALQYL 304

Query: 210 NL-EGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITD 266
           NL E   +T A L  L+ L +L +L L+ CQ L+D G    + +  L+ L+L G   +TD
Sbjct: 305 NLSEYKNLTDAGLAHLTPLTALQHLGLSGCQNLTDAGLAHLTPLMGLQHLDLSGCQNLTD 364

Query: 267 ECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLT 324
             L HL  LT L+ LNL  C  + D GL +LT L  L+ L+LS  Q +  +GL HL+ LT
Sbjct: 365 AGLAHLTPLTGLQHLNLSRCNKLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLAHLTPLT 424

Query: 325 NLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA 382
            L+ ++LS    ++D  L  L  L+ L+ LNL + R+ TD GLA LT L+ L HL+L   
Sbjct: 425 GLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLCNCRKFTDNGLAHLTPLSVLQHLNLSRC 484

Query: 383 -RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
            ++TD G A+L     L+ L++     LTD G+ H+  L+SL  L L     LTD  L  
Sbjct: 485 NKLTDVGLAHLTPLTALQHLDLSSCYNLTDVGLAHLTPLTSLQHLGLISCDKLTDAGLVH 544

Query: 441 ISGLTGLVSLNVSNSR-ITSAGLRHL 465
           +  LTGL  LN+SN + +T AGL HL
Sbjct: 545 LKLLTGLQHLNLSNCKNLTDAGLAHL 570



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 99/240 (41%), Positives = 135/240 (56%), Gaps = 18/240 (7%)

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSCG-IGDE 291
           N C L+   CE      +LKVL+  F E   +TD  L HL  LT L+ L L  C  + + 
Sbjct: 239 NACFLALKSCE------NLKVLH--FKECRHLTDAGLAHLTPLTALQHLGLGQCWRLTNA 290

Query: 292 GLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSS 349
           GL +LT L  L+ L LS+ + +  +GL HL+ LT L+ + LS    ++D  L  L  L  
Sbjct: 291 GLAHLTPLTALQYLNLSEYKNLTDAGLAHLTPLTALQHLGLSGCQNLTDAGLAHLTPLMG 350

Query: 350 LKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-G 406
           L+ L+L   Q +TD GLA LT LTGL HL+L    ++TD+G A+L     L+ L++ G  
Sbjct: 351 LQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLSRCNKLTDAGLAHLTPLTGLQHLDLSGCQ 410

Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHL 465
            LTDAG+ H+  L+ L  L+LS   NLTD  L  ++ LTGL  LN+ N R  T  GL HL
Sbjct: 411 NLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLCNCRKFTDNGLAHL 470


>gi|301098037|ref|XP_002898112.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262105473|gb|EEY63525.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 648

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 145/475 (30%), Positives = 234/475 (49%), Gaps = 12/475 (2%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQG-SSL 59
           +LP +++  +   L     L +   +A     L +  L  +  V D W D I  +   S+
Sbjct: 141 VLPPELALSVLQWLKQHYVLDKPQFQALTPLLLLEWNLADHQDVEDSWFDDIPEKTLESV 200

Query: 60  LSVDLSG----SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
            S+D+SG      +      H+     L    F  C  +S   +E L+  + LT+L+   
Sbjct: 201 KSIDVSGCIHLQQLGSEWGRHVNRLPELLVASFQGCTGLSKETIEMLKLSTKLTTLNLSG 260

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
              +  + +K+   L +L  L L  C R+   G+  L  L KLE L +  C  +TD    
Sbjct: 261 CANVDDKCVKSLRQLEHLKSLQLVGCRRLTDKGVKRLFKLTKLEKLRLGRCRKLTDDAFG 320

Query: 175 P-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFY 232
             +     L+ L +S  ++++  + ++  ++ L +L + GC  ++   + SL+ L +L Y
Sbjct: 321 GFVDSFPKLRELDVSNCRLSERAMQHIGQVKSLEVLVIRGCQDISDVGMASLAELTNLKY 380

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
            +   C        ++++   L+VL LG+    +     L+ LT L+ L L  C I   G
Sbjct: 381 FDARHCGKIHSIPTEWTQ---LEVLLLGYTAFAESDAAVLQYLTKLQELELRKCRIMKRG 437

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
              ++ L +L+ LE+++T +  S L  + +   NL+++N+S T ISD     L  L  L+
Sbjct: 438 FQFISRLKHLERLEVAETALTDSRLLEICNNAINLKALNVSNTEISDSGTTGLTKLKELR 497

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
            L LD   IT+  LA L+ L  L  LDLFGA ITD+G  +L     L+ L ICGG + D 
Sbjct: 498 ILGLDTSGITNRALANLSFLPQLERLDLFGANITDNGLMHLIPLHKLQELAICGGNIGDR 557

Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
           GV  I  L+SLT LNLSQN N+  K+L  +  LT L  LN+SN+ I++  LRHL+
Sbjct: 558 GVGLISKLTSLTSLNLSQNRNIRTKSLFYLRSLTSLRCLNLSNTGISALSLRHLS 612



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 167/352 (47%), Gaps = 24/352 (6%)

Query: 13  ELVYSRCLTEVSLEA-FRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTD 71
           +LV  R LT+  ++  F+   L+ L LG+   + D            L  +D+S   +++
Sbjct: 282 QLVGCRRLTDKGVKRLFKLTKLEKLRLGRCRKLTDDAFGGFVDSFPKLRELDVSNCRLSE 341

Query: 72  SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR---RNNAITAQ------ 122
             + H+    +L+ L    C  ISD G+  L  L+NL     R   + ++I  +      
Sbjct: 342 RAMQHIGQVKSLEVLVIRGCQDISDVGMASLAELTNLKYFDARHCGKIHSIPTEWTQLEV 401

Query: 123 ---GMKAFAG--------LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
              G  AFA         L  L +L+L +C  +  G   +  L  LE L +     +TDS
Sbjct: 402 LLLGYTAFAESDAAVLQYLTKLQELELRKCRIMKRGFQFISRLKHLERLEVAE-TALTDS 460

Query: 172 DMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
            +  + +   NLK+L +S ++++DSG   L  L++L +L L+   +T   L +LS L  L
Sbjct: 461 RLLEICNNAINLKALNVSNTEISDSGTTGLTKLKELRILGLDTSGITNRALANLSFLPQL 520

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL-DSCGIG 289
             L+L    ++D+G      +  L+ L +    I D  +  +  LT+L SLNL  +  I 
Sbjct: 521 ERLDLFGANITDNGLMHLIPLHKLQELAICGGNIGDRGVGLISKLTSLTSLNLSQNRNIR 580

Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
            + L  L  L +L+CL LS+T + +  LRHLS L  L+S+++    +S G +
Sbjct: 581 TKSLFYLRSLTSLRCLNLSNTGISALSLRHLSPLKELQSLSVYGCSLSQGHI 632



 Score = 46.2 bits (108), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 3/101 (2%)

Query: 372 TGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQ 429
           T LT L+L G A + D     LR  ++L+SL++ G   LTD GVK +  L+ L  L L +
Sbjct: 251 TKLTTLNLSGCANVDDKCVKSLRQLEHLKSLQLVGCRRLTDKGVKRLFKLTKLEKLRLGR 310

Query: 430 NCNLTDKTLE-LISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
              LTD      +     L  L+VSN R++   ++H+   +
Sbjct: 311 CRKLTDDAFGGFVDSFPKLRELDVSNCRLSERAMQHIGQVK 351


>gi|283780172|ref|YP_003370927.1| hypothetical protein Psta_2397 [Pirellula staleyi DSM 6068]
 gi|283438625|gb|ADB17067.1| leucine-rich repeat cysteine-containing subtype [Pirellula staleyi
           DSM 6068]
          Length = 443

 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 120/351 (34%), Positives = 192/351 (54%), Gaps = 27/351 (7%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           VTD+GL +L     L+ L       ++D G+EHL  L  L  +  +R + +T++G ++ A
Sbjct: 107 VTDAGLANLDGHPTLRILVLELS-SVTDAGMEHLTKLPALEDIQLKRCD-LTSKGYESLA 164

Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
            +  L ++   +       L  +K + +LE L+++ CN +T++ + PL+G+T LKSL+I 
Sbjct: 165 KIKTLRRIRAPQTNFNDDCLAAIKDMSQLELLDLQDCNQVTEAGLAPLAGMTKLKSLRIY 224

Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
              +TD+ + Y+K  + L  L+LE    +A  +D +  +G L                  
Sbjct: 225 GPTITDTVMGYIKDCKNLASLSLEQ---SAVGVDGMKVIGGL------------------ 263

Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
           SK+  LK+   G + +TD+ L  + GL +LE L L S     +G+V+L G+  LK L+LS
Sbjct: 264 SKLKELKLY--GASNVTDDALAQIAGLKDLEILELRSTTTTSKGMVHLAGMSKLKLLDLS 321

Query: 309 DT-QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
           +T  + ++GL  L+ LTNLE INL +T + D  L  LAG++ LK LNLD  Q+TD GL  
Sbjct: 322 ETANIDNAGLAALAPLTNLEEINLWYTFVDDAGLAPLAGMTKLKRLNLDKCQVTDAGLVH 381

Query: 368 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIK 417
           L  L+ L  L +   R+TD+G A L   KNL+ L I     ++D GV  ++
Sbjct: 382 LKGLSNLEFLHIGSTRVTDTGLAELEGLKNLKHLVITFCNDISDDGVAKLQ 432



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 162/325 (49%), Gaps = 28/325 (8%)

Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
           +D ++K L GL +L  L+ +   VTD+G+A L G   L +L LE   VT A ++ L+ L 
Sbjct: 84  SDENLKHLKGLPSLTRLEANVRGVTDAGLANLDGHPTLRILVLELSSVTDAGMEHLTKLP 143

Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG- 287
           +L  + L RC L+  G E  +KI +L+ +        D+CL  +K ++ LE L+L  C  
Sbjct: 144 ALEDIQLKRCDLTSKGYESLAKIKTLRRIRAPQTNFNDDCLAAIKDMSQLELLDLQDCNQ 203

Query: 288 IGDEGLVNLTGLCNLKCLE------------------------LSDTQVGSSGLRHLSGL 323
           + + GL  L G+  LK L                         L  + VG  G++ + GL
Sbjct: 204 VTEAGLAPLAGMTKLKSLRIYGPTITDTVMGYIKDCKNLASLSLEQSAVGVDGMKVIGGL 263

Query: 324 TNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF-G 381
           + L+ + L   + ++D +L ++AGL  L+ L L +   T  G+  L  ++ L  LDL   
Sbjct: 264 SKLKELKLYGASNVTDDALAQIAGLKDLEILELRSTTTTSKGMVHLAGMSKLKLLDLSET 323

Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
           A I ++G A L    NL  + +    + DAG+  +  ++ L  LNL + C +TD  L  +
Sbjct: 324 ANIDNAGLAALAPLTNLEEINLWYTFVDDAGLAPLAGMTKLKRLNLDK-CQVTDAGLVHL 382

Query: 442 SGLTGLVSLNVSNSRITSAGLRHLN 466
            GL+ L  L++ ++R+T  GL  L 
Sbjct: 383 KGLSNLEFLHIGSTRVTDTGLAELE 407



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 125/228 (54%), Gaps = 6/228 (2%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           + L S+ + G  +TD+ + ++KDC NL SL         DG ++ + GLS L  L     
Sbjct: 216 TKLKSLRIYGPTITDTVMGYIKDCKNLASLSLEQSAVGVDG-MKVIGGLSKLKELKLYGA 274

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           + +T   +   AGL +L  L+L   T    G+V+L G+ KL+ L++     I ++ +  L
Sbjct: 275 SNVTDDALAQIAGLKDLEILELRSTTTTSKGMVHLAGMSKLKLLDLSETANIDNAGLAAL 334

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           + LTNL+ + +  + V D+G+A L G+ KL  LNL+ C VT A L  L  L +L +L++ 
Sbjct: 335 APLTNLEEINLWYTFVDDAGLAPLAGMTKLKRLNLDKCQVTDAGLVHLKGLSNLEFLHIG 394

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK----GLTNLE 279
             +++D G  +   + +LK L + F N+I+D+ +  L+    GLT +E
Sbjct: 395 STRVTDTGLAELEGLKNLKHLVITFCNDISDDGVAKLQAALPGLTKIE 442



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/239 (34%), Positives = 117/239 (48%), Gaps = 26/239 (10%)

Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
           G++  + LG  E +DE L HLKGL +L  L  +  G+ D GL NL G   L+ L L  + 
Sbjct: 72  GNITEVKLGV-EGSDENLKHLKGLPSLTRLEANVRGVTDAGLANLDGHPTLRILVLELSS 130

Query: 312 VGSSGLRHLSGLTNLESINLSF------------------------TGISDGSLRKLAGL 347
           V  +G+ HL+ L  LE I L                          T  +D  L  +  +
Sbjct: 131 VTDAGMEHLTKLPALEDIQLKRCDLTSKGYESLAKIKTLRRIRAPQTNFNDDCLAAIKDM 190

Query: 348 SSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
           S L+ L+L D  Q+T+ GLA L  +T L  L ++G  ITD+   Y+++ KNL SL +   
Sbjct: 191 SQLELLDLQDCNQVTEAGLAPLAGMTKLKSLRIYGPTITDTVMGYIKDCKNLASLSLEQS 250

Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
            +   G+K I  LS L  L L    N+TD  L  I+GL  L  L + ++  TS G+ HL
Sbjct: 251 AVGVDGMKVIGGLSKLKELKLYGASNVTDDALAQIAGLKDLEILELRSTTTTSKGMVHL 309


>gi|168701673|ref|ZP_02733950.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 367

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/301 (37%), Positives = 172/301 (57%), Gaps = 2/301 (0%)

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           +TD  +K L+GL NL  L +  + VTD+G+  L GL+ LT L+L    VT A +  L+AL
Sbjct: 61  VTDKGLKELAGLKNLTHLNLFSTWVTDAGVKELAGLKGLTTLDLNSTSVTDAGMKELAAL 120

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
            +L  L L+   ++D G ++ + +  L  L+L   ++TD  L  L  L  L ++ L++  
Sbjct: 121 NNLTTLRLSGKGVTDAGLKELAALKKLANLDLSHTKVTDAGLKELAALKGLTTIRLNNTE 180

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           + D GL  L  L  L  L+LS T+V  +GL+ L+ L  L  + L  T ++D  L++LAGL
Sbjct: 181 VTDAGLKELAALKKLADLDLSQTKVTDAGLKELAALKGLTCLGLLGTKVTDAGLKELAGL 240

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
            +L  L+L    +TD GL  L +L  LTHL LFG ++T  G   L   K L +L +    
Sbjct: 241 -NLTDLHLAGTPVTDAGLKELAALKNLTHLYLFGTKVTGVGLKELSGLKGLTTLYLNNTK 299

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNH 467
           +TDAGVK +  L  LT L+LS    +TD  ++ ++GL GL +L +  +++T AG++ LN 
Sbjct: 300 VTDAGVKELSGLKGLTTLDLSY-TEMTDAGVKALAGLKGLTNLELYGTKVTDAGVKELNS 358

Query: 468 A 468
           A
Sbjct: 359 A 359



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/300 (37%), Positives = 171/300 (57%), Gaps = 3/300 (1%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           +++D GL+ L GL NLT L+   +  +T  G+K  AGL  L  LDL   +    G+  L 
Sbjct: 60  RVTDKGLKELAGLKNLTHLNL-FSTWVTDAGVKELAGLKGLTTLDLNSTSVTDAGMKELA 118

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
            L  L +L +     +TD+ +K L+ L  L +L +S +KVTD+G+  L  L+ LT + L 
Sbjct: 119 ALNNLTTLRLSG-KGVTDAGLKELAALKKLANLDLSHTKVTDAGLKELAALKGLTTIRLN 177

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
              VT A L  L+AL  L  L+L++ +++D G ++ + +  L  L L   ++TD  L  L
Sbjct: 178 NTEVTDAGLKELAALKKLADLDLSQTKVTDAGLKELAALKGLTCLGLLGTKVTDAGLKEL 237

Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
            GL NL  L+L    + D GL  L  L NL  L L  T+V   GL+ LSGL  L ++ L+
Sbjct: 238 AGL-NLTDLHLAGTPVTDAGLKELAALKNLTHLYLFGTKVTGVGLKELSGLKGLTTLYLN 296

Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
            T ++D  +++L+GL  L +L+L   ++TD G+ AL  L GLT+L+L+G ++TD+G   L
Sbjct: 297 NTKVTDAGVKELSGLKGLTTLDLSYTEMTDAGVKALAGLKGLTNLELYGTKVTDAGVKEL 356



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/306 (37%), Positives = 169/306 (55%), Gaps = 5/306 (1%)

Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
           LSF R   +T +G+K  AGL NL  L+L        G+  L GL  L +L++     +TD
Sbjct: 56  LSFTR---VTDKGLKELAGLKNLTHLNLFSTWVTDAGVKELAGLKGLTTLDLN-STSVTD 111

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           + MK L+ L NL +L++S   VTD+G+  L  L+KL  L+L    VT A L  L+AL  L
Sbjct: 112 AGMKELAALNNLTTLRLSGKGVTDAGLKELAALKKLANLDLSHTKVTDAGLKELAALKGL 171

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
             + LN  +++D G ++ + +  L  L+L   ++TD  L  L  L  L  L L    + D
Sbjct: 172 TTIRLNNTEVTDAGLKELAALKKLADLDLSQTKVTDAGLKELAALKGLTCLGLLGTKVTD 231

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
            GL  L GL NL  L L+ T V  +GL+ L+ L NL  + L  T ++   L++L+GL  L
Sbjct: 232 AGLKELAGL-NLTDLHLAGTPVTDAGLKELAALKNLTHLYLFGTKVTGVGLKELSGLKGL 290

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
            +L L+  ++TD G+  L+ L GLT LDL    +TD+G   L   K L +LE+ G  +TD
Sbjct: 291 TTLYLNNTKVTDAGVKELSGLKGLTTLDLSYTEMTDAGVKALAGLKGLTNLELYGTKVTD 350

Query: 411 AGVKHI 416
           AGVK +
Sbjct: 351 AGVKEL 356



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/282 (35%), Positives = 150/282 (53%), Gaps = 26/282 (9%)

Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
           + +S ++VTD G+  L GL+ LT LNL    VT A +  L+ L  L  L+LN   ++D G
Sbjct: 54  VYLSFTRVTDKGLKELAGLKNLTHLNLFSTWVTDAGVKELAGLKGLTTLDLNSTSVTDAG 113

Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
            +                         L  L NL +L L   G+ D GL  L  L  L  
Sbjct: 114 MK------------------------ELAALNNLTTLRLSGKGVTDAGLKELAALKKLAN 149

Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
           L+LS T+V  +GL+ L+ L  L +I L+ T ++D  L++LA L  L  L+L   ++TD G
Sbjct: 150 LDLSHTKVTDAGLKELAALKGLTTIRLNNTEVTDAGLKELAALKKLADLDLSQTKVTDAG 209

Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
           L  L +L GLT L L G ++TD+G   L    NL  L + G  +TDAG+K +  L +LT 
Sbjct: 210 LKELAALKGLTCLGLLGTKVTDAGLKELAGL-NLTDLHLAGTPVTDAGLKELAALKNLTH 268

Query: 425 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
           L L     +T   L+ +SGL GL +L ++N+++T AG++ L+
Sbjct: 269 LYLF-GTKVTGVGLKELSGLKGLTTLYLNNTKVTDAGVKELS 309



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 162/330 (49%), Gaps = 29/330 (8%)

Query: 41  YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
           +  V DK +  +A    +L  ++L  + VTD+G+  L     L +LD N    ++D G++
Sbjct: 58  FTRVTDKGLKELAGL-KNLTHLNLFSTWVTDAGVKELAGLKGLTTLDLN-STSVTDAGMK 115

Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
            L  L+NLT+L       +T  G+K  A L  L  LDL        GL  L  L  L ++
Sbjct: 116 ELAALNNLTTLRL-SGKGVTDAGLKELAALKKLANLDLSHTKVTDAGLKELAALKGLTTI 174

Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
            +     +TD+ +K L+ L  L  L +S +KVTD+G+  L  L+ LT L L G  VT A 
Sbjct: 175 RLNNTE-VTDAGLKELAALKKLADLDLSQTKVTDAGLKELAALKGLTCLGLLGTKVTDAG 233

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
           L  L+ L            L+D              L+L    +TD  L  L  L NL  
Sbjct: 234 LKELAGL-----------NLTD--------------LHLAGTPVTDAGLKELAALKNLTH 268

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           L L    +   GL  L+GL  L  L L++T+V  +G++ LSGL  L +++LS+T ++D  
Sbjct: 269 LYLFGTKVTGVGLKELSGLKGLTTLYLNNTKVTDAGVKELSGLKGLTTLDLSYTEMTDAG 328

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTS 370
           ++ LAGL  L +L L   ++TD G+  L S
Sbjct: 329 VKALAGLKGLTNLELYGTKVTDAGVKELNS 358



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 100/217 (46%), Gaps = 40/217 (18%)

Query: 5   DISQQIFNELVYSRCLTEVSLEAFR--DCALQDL-------CLGQY-PGVNDKWMDVIAS 54
           +++     EL   + L ++ L   +  D  L++L       CLG     V D  +  +A 
Sbjct: 180 EVTDAGLKELAALKKLADLDLSQTKVTDAGLKELAALKGLTCLGLLGTKVTDAGLKELA- 238

Query: 55  QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
            G +L  + L+G+ VTD+GL  L    NL  L + F  +++  GL+ L GL  LT+L + 
Sbjct: 239 -GLNLTDLHLAGTPVTDAGLKELAALKNLTHL-YLFGTKVTGVGLKELSGLKGLTTL-YL 295

Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
            N  +T  G+K  +GL  L  LDL                             +TD+ +K
Sbjct: 296 NNTKVTDAGVKELSGLKGLTTLDLSYTE-------------------------MTDAGVK 330

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLN 210
            L+GL  L +L++  +KVTD+G+  L   L K  +LN
Sbjct: 331 ALAGLKGLTNLELYGTKVTDAGVKELNSALPKCKILN 367


>gi|46447250|ref|YP_008615.1| hypothetical protein pc1616 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400891|emb|CAF24340.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 813

 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 148/399 (37%), Positives = 218/399 (54%), Gaps = 17/399 (4%)

Query: 57  SSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
           ++L  +DLS S + TD+GL HL    +LQ LD +    ++  GL HL  L  L  L    
Sbjct: 403 TALQYLDLSDSGNFTDAGLAHLTPLVSLQHLDLSKSENLTGDGLAHLTPLVALRHLGLSD 462

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
              +T  G+     L+ L  LDL  C  +   GLV+L  L+ L+ L++K C  +TD+ + 
Sbjct: 463 CRNLTDAGLAHLTPLVALRHLDLSECKNLTDDGLVHLSSLVALQYLSLKLCENLTDAGLA 522

Query: 175 PLSGLTNLKSLQIS-----CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALG 228
            L+ LT L+ L +      C  +TD G+A+L  L  L  L+L     +T A L  L+ L 
Sbjct: 523 HLTPLTTLEHLDLGLDLGCCHNLTDDGLAHLSSLTALKHLDLSWRENLTDAGLAHLTPLT 582

Query: 229 SLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC- 286
           +L +L+L+ C+ L+D+G    + + +L+ L+L  ++ITDE L HL  L+ L  L+L+ C 
Sbjct: 583 ALRHLDLSWCENLTDEGLAYLTPLVALQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCR 642

Query: 287 GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKL 344
            I   GL +LT L NL+ L+LS    + S  L +LS L NL+ +NLS   G+    L  L
Sbjct: 643 RINGYGLAHLTSLVNLEHLDLSGCYHLPSFQLIYLSSLVNLQHLNLSECFGLCHDGLEDL 702

Query: 345 AGLSSLKSLNLDA-RQITDTGLAALTSLTG--LTHLDLFG-ARITDSGAAYLRNFKNLRS 400
             L +L+ L+L     +TD GLA LTSL G  L HLDL G  +ITD+G A+L +   L+ 
Sbjct: 703 TPLMNLQYLDLSGCINLTDQGLAYLTSLVGLDLQHLDLSGCKKITDTGLAHLTSLVTLQH 762

Query: 401 LEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
           L +     LTD G+ H+  L +L  L L +  N+TD  L
Sbjct: 763 LNLSECVNLTDTGLAHLVSLVNLQYLELRECKNITDAGL 801



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 151/436 (34%), Positives = 217/436 (49%), Gaps = 42/436 (9%)

Query: 71  DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
           D+GL HL   + LQ LD + C  + D GL HL  L+ L  L    +   T  G+     L
Sbjct: 368 DTGLAHLTSLTALQHLDLSECYLLKDTGLAHLSSLTALQYLDLSDSGNFTDAGLAHLTPL 427

Query: 131 INLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
           ++L  LDL +   + G GL +L  L+ L  L +  C  +TD+ +  L+ L  L+ L +S 
Sbjct: 428 VSLQHLDLSKSENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLVALRHLDLSE 487

Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNR----CQ-LSD 242
           C  +TD G+ +L  L  L  L+L+ C  +T A L  L+ L +L +L+L      C  L+D
Sbjct: 488 CKNLTDDGLVHLSSLVALQYLSLKLCENLTDAGLAHLTPLTTLEHLDLGLDLGCCHNLTD 547

Query: 243 DGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC--------------- 286
           DG    S + +LK L+L + E +TD  L HL  LT L  L+L  C               
Sbjct: 548 DGLAHLSSLTALKHLDLSWRENLTDAGLAHLTPLTALRHLDLSWCENLTDEGLAYLTPLV 607

Query: 287 ----------GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FT 334
                      I DEGL +L  L  L+ L L+D  ++   GL HL+ L NLE ++LS   
Sbjct: 608 ALQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCRRINGYGLAHLTSLVNLEHLDLSGCY 667

Query: 335 GISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 392
            +    L  L+ L +L+ LNL +   +   GL  LT L  L +LDL G   +TD G AYL
Sbjct: 668 HLPSFQLIYLSSLVNLQHLNLSECFGLCHDGLEDLTPLMNLQYLDLSGCINLTDQGLAYL 727

Query: 393 RNFK--NLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449
            +    +L+ L++ G   +TD G+ H+  L +L  LNLS+  NLTD  L  +  L  L  
Sbjct: 728 TSLVGLDLQHLDLSGCKKITDTGLAHLTSLVTLQHLNLSECVNLTDTGLAHLVSLVNLQY 787

Query: 450 LNVSNSR-ITSAGLRH 464
           L +   + IT AGL H
Sbjct: 788 LELRECKNITDAGLAH 803



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 125/361 (34%), Positives = 190/361 (52%), Gaps = 35/361 (9%)

Query: 68  DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           ++TD+GL HL     L+ LD + C  ++D GL HL  L  L  LS +    +T  G+   
Sbjct: 465 NLTDAGLAHLTPLVALRHLDLSECKNLTDDGLVHLSSLVALQYLSLKLCENLTDAGLAHL 524

Query: 128 AGLINLVKLDLER----CTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
             L  L  LDL      C  +   GL +L  L  L+ L++ W   +TD+ +  L+ LT L
Sbjct: 525 TPLTTLEHLDLGLDLGCCHNLTDDGLAHLSSLTALKHLDLSWRENLTDAGLAHLTPLTAL 584

Query: 183 KSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QL 240
           + L +S C  +TD G+AYL  L  L  L+L+G  +T   L+ L+ L +L +L+LN C ++
Sbjct: 585 RHLDLSWCENLTDEGLAYLTPLVALQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCRRI 644

Query: 241 SDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
           +  G    + + +L+ L+L G   +    L++L  L NL+ LNL  C G+  +GL +LT 
Sbjct: 645 NGYGLAHLTSLVNLEHLDLSGCYHLPSFQLIYLSSLVNLQHLNLSECFGLCHDGLEDLTP 704

Query: 299 LCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
           L NL+ L+LS    +   GL +L+ L  L+  +L  +G                      
Sbjct: 705 LMNLQYLDLSGCINLTDQGLAYLTSLVGLDLQHLDLSG---------------------C 743

Query: 358 RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVK 414
           ++ITDTGLA LTSL  L HL+L     +TD+G A+L +  NL+ LE+  C   +TDAG+ 
Sbjct: 744 KKITDTGLAHLTSLVTLQHLNLSECVNLTDTGLAHLVSLVNLQYLELREC-KNITDAGLA 802

Query: 415 H 415
           H
Sbjct: 803 H 803



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 127/388 (32%), Positives = 190/388 (48%), Gaps = 48/388 (12%)

Query: 95  SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
           ++  L  L+ L N   L ++ NN I        +GL+N     +    +I     N    
Sbjct: 275 NEESLIELKELLNFARL-YQLNNLINYLEFTVVSGLLNNTS-HVNEFEKILNHFSN---- 328

Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV----TDSGIAYLKGLQKLTLLN 210
            ++E LN+   +  T++       L N K+L++ C K+     D+G+A+L  L  L  L+
Sbjct: 329 -EIEGLNLSGKDFFTEAHFL---ALKNCKNLKVLCLKIFYTPIDTGLAHLTSLTALQHLD 384

Query: 211 LEGCPVTAAC-LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
           L  C +     L  LS+L +L YL+L     SD G                    TD  L
Sbjct: 385 LSECYLLKDTGLAHLSSLTALQYLDL-----SDSG------------------NFTDAGL 421

Query: 270 VHLKGLTNLESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLE 327
            HL  L +L+ L+L  S  +  +GL +LT L  L+ L LSD + +  +GL HL+ L  L 
Sbjct: 422 AHLTPLVSLQHLDLSKSENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLVALR 481

Query: 328 SINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL---FG- 381
            ++LS    ++D  L  L+ L +L+ L+L     +TD GLA LT LT L HLDL    G 
Sbjct: 482 HLDLSECKNLTDDGLVHLSSLVALQYLSLKLCENLTDAGLAHLTPLTTLEHLDLGLDLGC 541

Query: 382 -ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
              +TD G A+L +   L+ L++     LTDAG+ H+  L++L  L+LS   NLTD+ L 
Sbjct: 542 CHNLTDDGLAHLSSLTALKHLDLSWRENLTDAGLAHLTPLTALRHLDLSWCENLTDEGLA 601

Query: 440 LISGLTGLVSLNVSNSRITSAGLRHLNH 467
            ++ L  L  L++  S IT  GL HL H
Sbjct: 602 YLTPLVALQYLSLKGSDITDEGLEHLAH 629



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/214 (34%), Positives = 111/214 (51%), Gaps = 13/214 (6%)

Query: 48  WMDVIASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
           W + +  +G + L+       + L GSD+TD GL HL   S L+ L  N C +I+  GL 
Sbjct: 591 WCENLTDEGLAYLTPLVALQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCRRINGYGLA 650

Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 159
           HL  L NL  L       + +  +   + L+NL  L+L  C  + H GL +L  LM L+ 
Sbjct: 651 HLTSLVNLEHLDLSGCYHLPSFQLIYLSSLVNLQHLNLSECFGLCHDGLEDLTPLMNLQY 710

Query: 160 LNIKWCNCITDSDMKPLSGLT--NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP- 215
           L++  C  +TD  +  L+ L   +L+ L +S C K+TD+G+A+L  L  L  LNL  C  
Sbjct: 711 LDLSGCINLTDQGLAYLTSLVGLDLQHLDLSGCKKITDTGLAHLTSLVTLQHLNLSECVN 770

Query: 216 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKF 248
           +T   L  L +L +L YL L  C+ ++D G   +
Sbjct: 771 LTDTGLAHLVSLVNLQYLELRECKNITDAGLAHY 804


>gi|301118238|ref|XP_002906847.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262108196|gb|EEY66248.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 648

 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 157/465 (33%), Positives = 246/465 (52%), Gaps = 20/465 (4%)

Query: 20  LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIA-SQGSSLLSVDLSGSDV-TDSGLIH 76
           LT+ S+E   + + L  + L     V DK + ++  SQ +SL SV+L    V +D G+  
Sbjct: 153 LTDESVEQLANLSGLTSVALKGCYQVTDKSIKLLTESQSNSLTSVNLGYCKVVSDEGITA 212

Query: 77  L-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN--AITAQGMKAFAGLINL 133
           +  + S L  L+   C Q+ D G+  L  L NL +L+    N  A+T  G+ A A + +L
Sbjct: 213 IASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWYCNQGALTDGGISALAEVTSL 272

Query: 134 VKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSK 191
             L+L  C+++   G+ +L  L+KL  L I     +TD     L+ L NL +L ++ C  
Sbjct: 273 TSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALAPLVNLVTLDVAGCYN 332

Query: 192 VTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFS 249
           +TD+G   L    KL   NL  C  +  A    + +L  + +LN  +C +++D G    +
Sbjct: 333 ITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNFMKCGKVTDRGLRSIA 392

Query: 250 KIGSLKVLNLG--FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLE 306
           K+ +L  L++   FN +TDE L  L  L  L+SL L  C GI DEG+  L+ L +L  L+
Sbjct: 393 KLRNLTSLDMVSCFN-VTDEGLNELSKLNRLKSLYLGGCSGIRDEGIAALSHLSSLVILD 451

Query: 307 LSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL-DARQITDT 363
           LS+  QVG+  L  +  L NL ++NL     I D  +  LAGL+ LK+LNL + R +TD 
Sbjct: 452 LSNCRQVGNKALLGIGALRNLTNLNLMRCNRIDDDGIAHLAGLTRLKTLNLANCRLLTDR 511

Query: 364 GLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSS 421
               +  +TGL  L L+   ++TD+G   L     L+S+++     LTDA ++   ++ +
Sbjct: 512 ATKTVAQMTGLESLVLWYCNKLTDAGILNLSTLTKLQSIDLASCSKLTDASLEAFLNMPN 571

Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHL 465
           LT L+L   C L+D+ +  +S +T L SLN+S    IT  GL HL
Sbjct: 572 LTSLDLGNCCLLSDEGMLTLSKVTSLTSLNLSECGEITDTGLEHL 616



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 142/451 (31%), Positives = 249/451 (55%), Gaps = 19/451 (4%)

Query: 32  ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
           +L  + LG    V+D+ +  IAS  S L  ++L G S V D+G+  L    NLQ+L+  +
Sbjct: 193 SLTSVNLGYCKVVSDEGITAIASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWY 252

Query: 91  CIQ--ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGG 147
           C Q  ++DGG+  L  +++LTSL+    + +T +G+ + + L+ L  L++     +   G
Sbjct: 253 CNQGALTDGGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQG 312

Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKL 206
            + L  L+ L +L++  C  ITD+  + L     L S  +  CS++ D+   +++ L K+
Sbjct: 313 FLALAPLVNLVTLDVAGCYNITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKM 372

Query: 207 TLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLG-FNE 263
             LN   C  VT   L S++ L +L  L++  C  ++D+G  + SK+  LK L LG  + 
Sbjct: 373 RFLNFMKCGKVTDRGLRSIAKLRNLTSLDMVSCFNVTDEGLNELSKLNRLKSLYLGGCSG 432

Query: 264 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLS 321
           I DE +  L  L++L  L+L +C  +G++ L+ +  L NL  L L    ++   G+ HL+
Sbjct: 433 IRDEGIAALSHLSSLVILDLSNCRQVGNKALLGIGALRNLTNLNLMRCNRIDDDGIAHLA 492

Query: 322 GLTNLESINLSFTGI-SDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL 379
           GLT L+++NL+   + +D + + +A ++ L+SL L    ++TD G+  L++LT L  +DL
Sbjct: 493 GLTRLKTLNLANCRLLTDRATKTVAQMTGLESLVLWYCNKLTDAGILNLSTLTKLQSIDL 552

Query: 380 FG-ARITDSGAAYLRNFKNLRSLEICGGG---LTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
              +++TD+      N  NL SL++  G    L+D G+  +  ++SLT LNLS+   +TD
Sbjct: 553 ASCSKLTDASLEAFLNMPNLTSLDL--GNCCLLSDEGMLTLSKVTSLTSLNLSECGEITD 610

Query: 436 KTLELISGLTGLVSLNVSN-SRITSAGLRHL 465
             LE +  L  L S+N+   +++T  G+  L
Sbjct: 611 TGLEHLKTLVNLSSVNLWYCTKVTPVGINFL 641



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 100/181 (55%), Gaps = 24/181 (13%)

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG---ISDGSLRKL--AGLS 348
           VNLTG     C  L+D  V    L +LSGLT++     +  G   ++D S++ L  +  +
Sbjct: 145 VNLTG-----CSSLTDESV--EQLANLSGLTSV-----ALKGCYQVTDKSIKLLTESQSN 192

Query: 349 SLKSLNLD-ARQITDTGLAALTS-LTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEIC- 404
           SL S+NL   + ++D G+ A+ S L+ L +L+L G +++ D+G   L   KNL++L +  
Sbjct: 193 SLTSVNLGYCKVVSDEGITAIASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWY 252

Query: 405 --GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAG 461
              G LTD G+  + +++SLT LNLS    LTD+ +  +S L  L  L ++N   +T  G
Sbjct: 253 CNQGALTDGGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQG 312

Query: 462 L 462
            
Sbjct: 313 F 313


>gi|406835528|ref|ZP_11095122.1| hypothetical protein SpalD1_27934 [Schlesneria paludicola DSM
           18645]
          Length = 590

 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 153/520 (29%), Positives = 228/520 (43%), Gaps = 82/520 (15%)

Query: 25  LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
           L+ F D  L DL L   P + D+ +  +A   +SL++++LS + +TD GL HLK  +NL+
Sbjct: 71  LKPFSD--LSDLDLHAIP-ILDRDLKELADL-TSLVNLNLSDTRITDRGLFHLKRLTNLE 126

Query: 85  SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
           ++       I+D G++ L     L  L+   +  IT +G++  +   NL  L L+     
Sbjct: 127 TVWLQNT-SITDAGIKELASFERLAELNL-SDTRITDRGLRELSDFQNLTTLWLQNVEMT 184

Query: 145 HGGLVNLKGLMKLESLNIKWCN-----CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
             GL  LK L  + +L++   N      ITD  ++ LS L  L+ L ++   + DSG+  
Sbjct: 185 DDGLQALKRLKTITTLDLSNLNGLNTIRITDEGLEQLSDLPELRHLYLANIPIADSGLTS 244

Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
           L+ L+ LT+L+L G  +T   L+ L  L  L    L + Q+SD G      + +L  L +
Sbjct: 245 LRRLKHLTVLDLRGTQITDEGLNELRGLHELETFKLTKTQISDAGLTALKGLKNLTTLLI 304

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG--- 316
           G N+IT   L  L  L  L++L+L    + D  L  L+ +  L  L LSDT +   G   
Sbjct: 305 GSNQITGTGLQELTNLDQLKTLDLSDTQVTDVELNRLSSIRTLTDLRLSDTPITDVGLRS 364

Query: 317 -------------------LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
                              +  L+ L +L  ++L  T I+D  L  L  L  L SLNLDA
Sbjct: 365 LRELKRLRRLTLGGTQITDISELNHLRDLTHLDLRVTPITDTGLHGLGDLKHLTSLNLDA 424

Query: 358 RQITDTGLAALTSLTGLTHLDL-------------------------------------- 379
            Q+TD  L+ L  L  L  L L                                      
Sbjct: 425 TQVTDASLSELKCLVHLKELSLSRTAISGLGFKSLERLEQLTVLRCDRCLIADEGLREIC 484

Query: 380 ----------FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 429
                      G R+TD G A L   + L+ L I    LTDAG+  +  L  L  L +S 
Sbjct: 485 TLKSLKTLVISGTRVTDDGLAELHQLEGLQELRIENNALTDAGMSELMVLGKLRTLGISH 544

Query: 430 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           N  +TD +L  I  L  L  L + N+ IT +GL     AR
Sbjct: 545 N-KITDTSLSDIKRLKNLTMLRIRNTEITDSGLNGFKDAR 583



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 129/388 (33%), Positives = 195/388 (50%), Gaps = 17/388 (4%)

Query: 88  FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
           F    + S+  L  L+  S+L+ L       I  + +K  A L +LV L+L        G
Sbjct: 57  FEEAHKFSEKHLHLLKPFSDLSDLDLH-AIPILDRDLKELADLTSLVNLNLSDTRITDRG 115

Query: 148 LVNLKGLMKLESLNIKWCN--CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
           L +LK L  LE++   W     ITD+ +K L+    L  L +S +++TD G+  L   Q 
Sbjct: 116 LFHLKRLTNLETV---WLQNTSITDAGIKELASFERLAELNLSDTRITDRGLRELSDFQN 172

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNL------NRCQLSDDGCEKFSKIGSLKVLNL 259
           LT L L+   +T   L +L  L ++  L+L      N  +++D+G E+ S +  L+ L L
Sbjct: 173 LTTLWLQNVEMTDDGLQALKRLKTITTLDLSNLNGLNTIRITDEGLEQLSDLPELRHLYL 232

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
               I D  L  L+ L +L  L+L    I DEGL  L GL  L+  +L+ TQ+  +GL  
Sbjct: 233 ANIPIADSGLTSLRRLKHLTVLDLRGTQITDEGLNELRGLHELETFKLTKTQISDAGLTA 292

Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
           L GL NL ++ +    I+   L++L  L  LK+L+L   Q+TD  L  L+S+  LT L L
Sbjct: 293 LKGLKNLTTLLIGSNQITGTGLQELTNLDQLKTLDLSDTQVTDVELNRLSSIRTLTDLRL 352

Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
               ITD G   LR  K LR L + G  +TD + + H++DL+ L L    +   +TD  L
Sbjct: 353 SDTPITDVGLRSLRELKRLRRLTLGGTQITDISELNHLRDLTHLDL----RVTPITDTGL 408

Query: 439 ELISGLTGLVSLNVSNSRITSAGLRHLN 466
             +  L  L SLN+  +++T A L  L 
Sbjct: 409 HGLGDLKHLTSLNLDATQVTDASLSELK 436



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 116/230 (50%), Gaps = 10/230 (4%)

Query: 245 CEKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
            E+ ++     V+ + F E    +++ L  LK  ++L  L+L +  I D  L  L  L +
Sbjct: 41  IERDAEAPDHPVIGIAFEEAHKFSEKHLHLLKPFSDLSDLDLHAIPILDRDLKELADLTS 100

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
           L  L LSDT++   GL HL  LTNLE++ L  T I+D  +++LA    L  LNL   +IT
Sbjct: 101 LVNLNLSDTRITDRGLFHLKRLTNLETVWLQNTSITDAGIKELASFERLAELNLSDTRIT 160

Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGL-----TDAGVKH 415
           D GL  L+    LT L L    +TD G   L+  K + +L++    GL     TD G++ 
Sbjct: 161 DRGLRELSDFQNLTTLWLQNVEMTDDGLQALKRLKTITTLDLSNLNGLNTIRITDEGLEQ 220

Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           + DL  L  L L+ N  + D  L  +  L  L  L++  ++IT  GL  L
Sbjct: 221 LSDLPELRHLYLA-NIPIADSGLTSLRRLKHLTVLDLRGTQITDEGLNEL 269



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 1/134 (0%)

Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
            S+  L  L   S L  L+L A  I D  L  L  LT L +L+L   RITD G  +L+  
Sbjct: 63  FSEKHLHLLKPFSDLSDLDLHAIPILDRDLKELADLTSLVNLNLSDTRITDRGLFHLKRL 122

Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
            NL ++ +    +TDAG+K +     L  LNLS +  +TD+ L  +S    L +L + N 
Sbjct: 123 TNLETVWLQNTSITDAGIKELASFERLAELNLS-DTRITDRGLRELSDFQNLTTLWLQNV 181

Query: 456 RITSAGLRHLNHAR 469
            +T  GL+ L   +
Sbjct: 182 EMTDDGLQALKRLK 195


>gi|46446906|ref|YP_008271.1| hypothetical protein pc1272 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400547|emb|CAF23996.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 618

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 142/409 (34%), Positives = 201/409 (49%), Gaps = 57/409 (13%)

Query: 66  GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
            + +TD+ L+ LK+C NL+ L    C  ++D GL +L  L+ L                 
Sbjct: 236 NASLTDAHLLALKNCKNLKVLHLQECRNLTDAGLAYLTPLTTLQ---------------- 279

Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
                     L+L  C   + GL +L  L+ L+ LN+  C  +TD+ +  L+ LT L  L
Sbjct: 280 ---------HLNLAGCKFANAGLAHLTPLVALQHLNLSHCRNLTDAGLPHLTLLTALTYL 330

Query: 186 QIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDD 243
            +S C  +TD+G+A+L  L  LT LNL  C  +T A L  L+ L +L YLNL+ C     
Sbjct: 331 NLSHCRNITDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPLTALTYLNLSSC----- 385

Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 302
                             N +TD  L HL  L  L  LNL  C    D GL +LT L  L
Sbjct: 386 ------------------NNLTDAGLAHLTPLVTLTHLNLSWCYNFTDAGLAHLTPLVAL 427

Query: 303 KCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQ 359
           + L+L   + +  +GL HL+ L  L  +NLS+    +D  L  LA L +L+ L+L+   Q
Sbjct: 428 QHLDLGHCRNITDAGLAHLTPLVALTHLNLSWCYNFTDAGLAHLAPLVALQHLDLNGCWQ 487

Query: 360 ITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIK 417
           +TD GLA L  L  LTHLDL     +TD+G  +L     L+ L++     LTDAG+ H+ 
Sbjct: 488 LTDAGLAHLAPLVALTHLDLSSCNHLTDAGLPHLTPLVALQHLDLSYCRNLTDAGLAHLA 547

Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHL 465
            L +LT LNLS   + TD  L  ++ L  L  LN++     T AGL H 
Sbjct: 548 PLVALTHLNLSSCNHFTDAGLTHLTPLLALQDLNLNYCENFTDAGLAHF 596



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 126/345 (36%), Positives = 170/345 (49%), Gaps = 35/345 (10%)

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
           ++E LN      +TD+ +  L    NLK L +  C  +TD+G+AYL  L  L  LNL GC
Sbjct: 227 EIEELNFSKNASLTDAHLLALKNCKNLKVLHLQECRNLTDAGLAYLTPLTTLQHLNLAGC 286

Query: 215 PVTAACLDSLSALGSLFYLNLNRCQ--------------------------LSDDGCEKF 248
               A L  L+ L +L +LNL+ C+                          ++D G    
Sbjct: 287 KFANAGLAHLTPLVALQHLNLSHCRNLTDAGLPHLTLLTALTYLNLSHCRNITDAGLAHL 346

Query: 249 SKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLE 306
           + + +L  LNL   N +TD  L HL  LT L  LNL SC  + D GL +LT L  L  L 
Sbjct: 347 TPLTALTYLNLSSCNNLTDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPLVTLTHLN 406

Query: 307 LSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDT 363
           LS       +GL HL+ L  L+ ++L     I+D  L  L  L +L  LNL      TD 
Sbjct: 407 LSWCYNFTDAGLAHLTPLVALQHLDLGHCRNITDAGLAHLTPLVALTHLNLSWCYNFTDA 466

Query: 364 GLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSS 421
           GLA L  L  L HLDL G  ++TD+G A+L     L  L++     LTDAG+ H+  L +
Sbjct: 467 GLAHLAPLVALQHLDLNGCWQLTDAGLAHLAPLVALTHLDLSSCNHLTDAGLPHLTPLVA 526

Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHL 465
           L  L+LS   NLTD  L  ++ L  L  LN+S+ +  T AGL HL
Sbjct: 527 LQHLDLSYCRNLTDAGLAHLAPLVALTHLNLSSCNHFTDAGLTHL 571



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 120/392 (30%), Positives = 187/392 (47%), Gaps = 38/392 (9%)

Query: 2   LPRDISQQIFNELVYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLL 60
            P +I +  F++   +  LT+  L A ++C  L+ L L +   + D  +  + +  ++L 
Sbjct: 224 FPNEIEELNFSK---NASLTDAHLLALKNCKNLKVLHLQECRNLTDAGLAYL-TPLTTLQ 279

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD------------------------ 96
            ++L+G    ++GL HL     LQ L+ + C  ++D                        
Sbjct: 280 HLNLAGCKFANAGLAHLTPLVALQHLNLSHCRNLTDAGLPHLTLLTALTYLNLSHCRNIT 339

Query: 97  -GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGL 154
             GL HL  L+ LT L+    N +T  G+     L  L  L+L  C  +   GL +L  L
Sbjct: 340 DAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPL 399

Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEG 213
           + L  LN+ WC   TD+ +  L+ L  L+ L +  C  +TD+G+A+L  L  LT LNL  
Sbjct: 400 VTLTHLNLSWCYNFTDAGLAHLTPLVALQHLDLGHCRNITDAGLAHLTPLVALTHLNLSW 459

Query: 214 CP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLV 270
           C   T A L  L+ L +L +L+LN C QL+D G    + + +L  L+L   N +TD  L 
Sbjct: 460 CYNFTDAGLAHLAPLVALQHLDLNGCWQLTDAGLAHLAPLVALTHLDLSSCNHLTDAGLP 519

Query: 271 HLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLES 328
           HL  L  L+ L+L  C  + D GL +L  L  L  L LS       +GL HL+ L  L+ 
Sbjct: 520 HLTPLVALQHLDLSYCRNLTDAGLAHLAPLVALTHLNLSSCNHFTDAGLTHLTPLLALQD 579

Query: 329 INLSF-TGISDGSLRKLAGLSSLKSLNLDARQ 359
           +NL++    +D  L     L++  +LNL   Q
Sbjct: 580 LNLNYCENFTDAGLAHFKSLATFPNLNLICYQ 611



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 95/194 (48%), Gaps = 40/194 (20%)

Query: 312 VGSSGLRHLSGLTNLESI---------NLSFT---GISDGSLRKLAGLSSLKSLNL-DAR 358
           V SS L   S LT  E I          L+F+    ++D  L  L    +LK L+L + R
Sbjct: 203 VVSSLLNQTSHLTGFEKILNHFPNEIEELNFSKNASLTDAHLLALKNCKNLKVLHLQECR 262

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR--------NFKNLRSLEICGG---- 406
            +TD GLA LT LT L HL+L G +  ++G A+L         N  + R+L   G     
Sbjct: 263 NLTDAGLAYLTPLTTLQHLNLAGCKFANAGLAHLTPLVALQHLNLSHCRNLTDAGLPHLT 322

Query: 407 --------------GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
                          +TDAG+ H+  L++LT LNLS   NLTD  L  ++ LT L  LN+
Sbjct: 323 LLTALTYLNLSHCRNITDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPLTALTYLNL 382

Query: 453 SN-SRITSAGLRHL 465
           S+ + +T AGL HL
Sbjct: 383 SSCNNLTDAGLAHL 396


>gi|168698219|ref|ZP_02730496.1| hypothetical protein GobsU_01767 [Gemmata obscuriglobus UQM 2246]
          Length = 380

 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 104/301 (34%), Positives = 167/301 (55%), Gaps = 1/301 (0%)

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           +TD ++K L  L +L S+ +S + VT++G+  L   + LT L+L    +T A L  L+ L
Sbjct: 60  VTDEELKELLPLKSLTSIDLSHTGVTNAGLKVLVAFKSLTTLSLHDTGITDAGLKELAPL 119

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
            +L   NL+  +++D G ++ + I +L  L+L   EITD  L  L  + +L +L+L    
Sbjct: 120 KNLTAFNLSNTKVTDTGLKELTAIRNLTALHLRKTEITDAGLKSLPPMKDLTTLDLSDTK 179

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           + D GL  L  L  L  L L +T+V  +GL+ L+   NL  + L  T ++D  L++LA L
Sbjct: 180 VTDAGLKALAPLERLTNLYLYNTEVTDTGLKELAPSKNLAVLLLYNTKVTDAGLKELAPL 239

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
            SL  L L   ++TD GL  L  L  LT L+L+G ++TD+G   L  F+NL  L++ G  
Sbjct: 240 KSLSVLVLGETEVTDAGLKELAPLKNLTALNLYGTKVTDAGVKELAPFQNLTLLDLSGTN 299

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNH 467
           +TDAG+K +    +L  L LS    +TD  L+ ++ L  L  L + +++ T AG++    
Sbjct: 300 VTDAGIKELARFKNLAHLELSSTA-VTDVGLKELASLKKLTKLFLISTKTTFAGIKEFQK 358

Query: 468 A 468
           A
Sbjct: 359 A 359



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 97/275 (35%), Positives = 152/275 (55%), Gaps = 1/275 (0%)

Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
           +VTD  +  L  L+ LT ++L    VT A L  L A  SL  L+L+   ++D G ++ + 
Sbjct: 59  RVTDEELKELLPLKSLTSIDLSHTGVTNAGLKVLVAFKSLTTLSLHDTGITDAGLKELAP 118

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
           + +L   NL   ++TD  L  L  + NL +L+L    I D GL +L  + +L  L+LSDT
Sbjct: 119 LKNLTAFNLSNTKVTDTGLKELTAIRNLTALHLRKTEITDAGLKSLPPMKDLTTLDLSDT 178

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
           +V  +GL+ L+ L  L ++ L  T ++D  L++LA   +L  L L   ++TD GL  L  
Sbjct: 179 KVTDAGLKALAPLERLTNLYLYNTEVTDTGLKELAPSKNLAVLLLYNTKVTDAGLKELAP 238

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           L  L+ L L    +TD+G   L   KNL +L + G  +TDAGVK +    +LTLL+LS  
Sbjct: 239 LKSLSVLVLGETEVTDAGLKELAPLKNLTALNLYGTKVTDAGVKELAPFQNLTLLDLS-G 297

Query: 431 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
            N+TD  ++ ++    L  L +S++ +T  GL+ L
Sbjct: 298 TNVTDAGIKELARFKNLAHLELSSTAVTDVGLKEL 332



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 102/308 (33%), Positives = 154/308 (50%), Gaps = 27/308 (8%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           SL S+DLS + VT++GL  L    +L +L  +    I+D GL+ L  L NLT+ +   N 
Sbjct: 73  SLTSIDLSHTGVTNAGLKVLVAFKSLTTLSLHDT-GITDAGLKELAPLKNLTAFNL-SNT 130

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
            +T  G+K    + NL  L L +                           ITD+ +K L 
Sbjct: 131 KVTDTGLKELTAIRNLTALHLRKTE-------------------------ITDAGLKSLP 165

Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
            + +L +L +S +KVTD+G+  L  L++LT L L    VT   L  L+   +L  L L  
Sbjct: 166 PMKDLTTLDLSDTKVTDAGLKALAPLERLTNLYLYNTEVTDTGLKELAPSKNLAVLLLYN 225

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
            +++D G ++ + + SL VL LG  E+TD  L  L  L NL +LNL    + D G+  L 
Sbjct: 226 TKVTDAGLKELAPLKSLSVLVLGETEVTDAGLKELAPLKNLTALNLYGTKVTDAGVKELA 285

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
              NL  L+LS T V  +G++ L+   NL  + LS T ++D  L++LA L  L  L L +
Sbjct: 286 PFQNLTLLDLSGTNVTDAGIKELARFKNLAHLELSSTAVTDVGLKELASLKKLTKLFLIS 345

Query: 358 RQITDTGL 365
            + T  G+
Sbjct: 346 TKTTFAGI 353



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/254 (33%), Positives = 134/254 (52%), Gaps = 1/254 (0%)

Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
           +G  VT   L  L  L SL  ++L+   +++ G +      SL  L+L    ITD  L  
Sbjct: 56  QGHRVTDEELKELLPLKSLTSIDLSHTGVTNAGLKVLVAFKSLTTLSLHDTGITDAGLKE 115

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
           L  L NL + NL +  + D GL  LT + NL  L L  T++  +GL+ L  + +L +++L
Sbjct: 116 LAPLKNLTAFNLSNTKVTDTGLKELTAIRNLTALHLRKTEITDAGLKSLPPMKDLTTLDL 175

Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
           S T ++D  L+ LA L  L +L L   ++TDTGL  L     L  L L+  ++TD+G   
Sbjct: 176 SDTKVTDAGLKALAPLERLTNLYLYNTEVTDTGLKELAPSKNLAVLLLYNTKVTDAGLKE 235

Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
           L   K+L  L +    +TDAG+K +  L +LT LNL     +TD  ++ ++    L  L+
Sbjct: 236 LAPLKSLSVLVLGETEVTDAGLKELAPLKNLTALNL-YGTKVTDAGVKELAPFQNLTLLD 294

Query: 452 VSNSRITSAGLRHL 465
           +S + +T AG++ L
Sbjct: 295 LSGTNVTDAGIKEL 308



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 154/316 (48%), Gaps = 20/316 (6%)

Query: 6   ISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLS 65
           ++ +   EL+  + LT + L               + GV +  + V+ +   SL ++ L 
Sbjct: 60  VTDEELKELLPLKSLTSIDL--------------SHTGVTNAGLKVLVA-FKSLTTLSLH 104

Query: 66  GSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
            + +TD+GL  L    NL +  FN    +++D GL+ L  + NLT+L  R+   IT  G+
Sbjct: 105 DTGITDAGLKELAPLKNLTA--FNLSNTKVTDTGLKELTAIRNLTALHLRKTE-ITDAGL 161

Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           K+   + +L  LDL        GL  L  L +L +L + +   +TD+ +K L+   NL  
Sbjct: 162 KSLPPMKDLTTLDLSDTKVTDAGLKALAPLERLTNLYL-YNTEVTDTGLKELAPSKNLAV 220

Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
           L +  +KVTD+G+  L  L+ L++L L    VT A L  L+ L +L  LNL   +++D G
Sbjct: 221 LLLYNTKVTDAGLKELAPLKSLSVLVLGETEVTDAGLKELAPLKNLTALNLYGTKVTDAG 280

Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
            ++ +   +L +L+L    +TD  +  L    NL  L L S  + D GL  L  L  L  
Sbjct: 281 VKELAPFQNLTLLDLSGTNVTDAGIKELARFKNLAHLELSSTAVTDVGLKELASLKKLTK 340

Query: 305 LELSDTQVGSSGLRHL 320
           L L  T+   +G++  
Sbjct: 341 LFLISTKTTFAGIKEF 356



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
           G R+TD     L   K+L S+++   G+T+AG+K +    SLT L+L  +  +TD  L+ 
Sbjct: 57  GHRVTDEELKELLPLKSLTSIDLSHTGVTNAGLKVLVAFKSLTTLSL-HDTGITDAGLKE 115

Query: 441 ISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           ++ L  L + N+SN+++T  GL+ L   R
Sbjct: 116 LAPLKNLTAFNLSNTKVTDTGLKELTAIR 144


>gi|46447300|ref|YP_008665.1| hypothetical protein pc1666 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400941|emb|CAF24390.1| hypothetical protein pc1666 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 518

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 131/343 (38%), Positives = 190/343 (55%), Gaps = 13/343 (3%)

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
           +K F+  I  +    E    I   L+ LK    L+ L ++ C+ +TD+ +  L+ L  L+
Sbjct: 179 LKFFSNEIEALNFS-ENTYLIDAHLLTLKNCKNLKVLYLQECHNLTDAGLSHLAPLVTLQ 237

Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QL 240
            L +S CSK+TD+G+A+L  L  L  L+L  C  +T A L  L+ L +L +LNL+ C +L
Sbjct: 238 HLNLSYCSKLTDAGLAHLTSLVTLQHLDLSKCYNLTDAGLTHLTPLAALQHLNLSYCSKL 297

Query: 241 SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
           +D G    + + +L+ L+L +   +TD  L HL  L  L+ LNL  C  + D GL +LT 
Sbjct: 298 TDAGLAHLTSLVTLQHLDLTWCVNLTDVGLAHLTPLAALQHLNLSYCIKLTDVGLAHLTS 357

Query: 299 LCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD 356
           L  L+ L+L+    +   GL HL+ L  L+ + LS    ++D  L  L  L +L+ LNL 
Sbjct: 358 LVALQHLDLTWCVNLTEVGLAHLTPLVTLQHLELSKCHNLTDAGLAHLTSLVALQHLNLS 417

Query: 357 A-RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEI-CGGGLTDAGV 413
             ++ITD GLA LT L  L HLDL G  ++TD G A+L     L+ L++ C   LTDAG+
Sbjct: 418 ICKKITDVGLAHLTPLVALQHLDLSGCDKLTDVGLAHLTTLVALQHLDLTCCVNLTDAGL 477

Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
            H+K L +L  LNLS   NLTD  L     LT   SLN+  SR
Sbjct: 478 VHLKPLMALQHLNLSYCTNLTDAGLAHFKNLT--TSLNLKLSR 518



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 104/296 (35%), Positives = 162/296 (54%), Gaps = 10/296 (3%)

Query: 68  DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           ++TD+GL HL     LQ L+ ++C +++D GL HL  L  L  L   +   +T  G+   
Sbjct: 221 NLTDAGLSHLAPLVTLQHLNLSYCSKLTDAGLAHLTSLVTLQHLDLSKCYNLTDAGLTHL 280

Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
             L  L  L+L  C+++   GL +L  L+ L+ L++ WC  +TD  +  L+ L  L+ L 
Sbjct: 281 TPLAALQHLNLSYCSKLTDAGLAHLTSLVTLQHLDLTWCVNLTDVGLAHLTPLAALQHLN 340

Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDD 243
           +S C K+TD G+A+L  L  L  L+L  C  +T   L  L+ L +L +L L++C  L+D 
Sbjct: 341 LSYCIKLTDVGLAHLTSLVALQHLDLTWCVNLTEVGLAHLTPLVTLQHLELSKCHNLTDA 400

Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
           G    + + +L+ LNL    +ITD  L HL  L  L+ L+L  C  + D GL +LT L  
Sbjct: 401 GLAHLTSLVALQHLNLSICKKITDVGLAHLTPLVALQHLDLSGCDKLTDVGLAHLTTLVA 460

Query: 302 LKCLELS-DTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL 355
           L+ L+L+    +  +GL HL  L  L+ +NLS+ T ++D  L     L++  SLNL
Sbjct: 461 LQHLDLTCCVNLTDAGLVHLKPLMALQHLNLSYCTNLTDAGLAHFKNLTT--SLNL 514



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/311 (34%), Positives = 167/311 (53%), Gaps = 9/311 (2%)

Query: 71  DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
           D+ L+ LK+C NL+ L    C  ++D GL HL  L  L  L+    + +T  G+     L
Sbjct: 199 DAHLLTLKNCKNLKVLYLQECHNLTDAGLSHLAPLVTLQHLNLSYCSKLTDAGLAHLTSL 258

Query: 131 INLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
           + L  LDL +C  +   GL +L  L  L+ LN+ +C+ +TD+ +  L+ L  L+ L ++ 
Sbjct: 259 VTLQHLDLSKCYNLTDAGLTHLTPLAALQHLNLSYCSKLTDAGLAHLTSLVTLQHLDLTW 318

Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCE 246
           C  +TD G+A+L  L  L  LNL  C  +T   L  L++L +L +L+L  C  L++ G  
Sbjct: 319 CVNLTDVGLAHLTPLAALQHLNLSYCIKLTDVGLAHLTSLVALQHLDLTWCVNLTEVGLA 378

Query: 247 KFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKC 304
             + + +L+ L L   + +TD  L HL  L  L+ LNL  C  I D GL +LT L  L+ 
Sbjct: 379 HLTPLVTLQHLELSKCHNLTDAGLAHLTSLVALQHLNLSICKKITDVGLAHLTPLVALQH 438

Query: 305 LELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQIT 361
           L+LS   ++   GL HL+ L  L+ ++L+    ++D  L  L  L +L+ LNL     +T
Sbjct: 439 LDLSGCDKLTDVGLAHLTTLVALQHLDLTCCVNLTDAGLVHLKPLMALQHLNLSYCTNLT 498

Query: 362 DTGLAALTSLT 372
           D GLA   +LT
Sbjct: 499 DAGLAHFKNLT 509



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/275 (35%), Positives = 149/275 (54%), Gaps = 9/275 (3%)

Query: 67  SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
           S +TD+GL HL     LQ LD + C  ++D GL HL  L+ L  L+    + +T  G+  
Sbjct: 245 SKLTDAGLAHLTSLVTLQHLDLSKCYNLTDAGLTHLTPLAALQHLNLSYCSKLTDAGLAH 304

Query: 127 FAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
              L+ L  LDL  C  +   GL +L  L  L+ LN+ +C  +TD  +  L+ L  L+ L
Sbjct: 305 LTSLVTLQHLDLTWCVNLTDVGLAHLTPLAALQHLNLSYCIKLTDVGLAHLTSLVALQHL 364

Query: 186 QIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSD 242
            ++ C  +T+ G+A+L  L  L  L L  C  +T A L  L++L +L +LNL+ C +++D
Sbjct: 365 DLTWCVNLTEVGLAHLTPLVTLQHLELSKCHNLTDAGLAHLTSLVALQHLNLSICKKITD 424

Query: 243 DGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC 300
            G    + + +L+ L+L G +++TD  L HL  L  L+ L+L  C  + D GLV+L  L 
Sbjct: 425 VGLAHLTPLVALQHLDLSGCDKLTDVGLAHLTTLVALQHLDLTCCVNLTDAGLVHLKPLM 484

Query: 301 NLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFT 334
            L+ L LS  T +  +GL H   LT   S+NL  +
Sbjct: 485 ALQHLNLSYCTNLTDAGLAHFKNLTT--SLNLKLS 517



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 58  SLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           +L  +DLSG D +TD GL HL     LQ LD   C+ ++D GL HL+ L  L  L+    
Sbjct: 435 ALQHLDLSGCDKLTDVGLAHLTTLVALQHLDLTCCVNLTDAGLVHLKPLMALQHLNLSYC 494

Query: 117 NAITAQGMKAFAGLINLVKLDLER 140
             +T  G+  F  L   + L L R
Sbjct: 495 TNLTDAGLAHFKNLTTSLNLKLSR 518


>gi|46446912|ref|YP_008277.1| hypothetical protein pc1278 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400553|emb|CAF24002.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 731

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 136/410 (33%), Positives = 213/410 (51%), Gaps = 33/410 (8%)

Query: 66  GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
            + +TD+ L+ LK+C NL++L    C +++D GL +L  L +L  L+      +T  G+ 
Sbjct: 332 NASLTDAHLLALKNCKNLKALHLQECYKLTDTGLVYLAPLVSLQYLNLFDCIKLTDAGLA 391

Query: 126 AFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
               L+ L  L+L  C ++ + GL++L+ LM L+ L++  C  +TD+ +  L+ L  L+ 
Sbjct: 392 HLTPLVALRHLNLMGCNKLTNAGLMHLRPLMALQHLDLSCCRNLTDAGLAHLAPLVALQH 451

Query: 185 LQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSD 242
           L +S C+ +T +G+A+LK L  L  LNL  C  +T A L  L+ L +L +L+L+ C+   
Sbjct: 452 LCLSECTNLTGAGLAHLKPLVNLQHLNLNSCYKLTDAGLAHLTPLMALQHLDLSCCR--- 508

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
                                +TD  L HL+ L  L+ L+L+ C    D GL +LT L  
Sbjct: 509 --------------------NLTDAGLAHLRPLVALQHLDLNCCKNFTDAGLTHLTPLVA 548

Query: 302 LKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DAR 358
           L+ L LS  + +  +GL +L  L  L  +NL+     +D  L  LA L +L+ LNL D  
Sbjct: 549 LQHLNLSCCRNLTDAGLAYLMPLVALSHLNLAGCHNFTDAGLAHLAPLVALQHLNLGDCY 608

Query: 359 QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 416
           ++T+ GL  LT L  L HLDL    ++TD+G  +L     L  L++     LTDAG+ H+
Sbjct: 609 RLTNAGLEHLTPLVALQHLDLSECEKLTDAGLTHLVPLVALTHLDLSECDKLTDAGLAHL 668

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHL 465
             L +L  LNL+    LTD  L  ++ L  L  L +   +  T  GL H 
Sbjct: 669 TPLEALQHLNLNWCDKLTDAGLAHLTPLLALQDLYLGYCKNFTEVGLAHF 718



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 130/370 (35%), Positives = 199/370 (53%), Gaps = 13/370 (3%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           +TD+GL++L    +LQ L+   CI+++D GL HL  L  L  L+    N +T  G+    
Sbjct: 360 LTDTGLVYLAPLVSLQYLNLFDCIKLTDAGLAHLTPLVALRHLNLMGCNKLTNAGLMHLR 419

Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
            L+ L  LDL  C  +   GL +L  L+ L+ L +  C  +T + +  L  L NL+ L +
Sbjct: 420 PLMALQHLDLSCCRNLTDAGLAHLAPLVALQHLCLSECTNLTGAGLAHLKPLVNLQHLNL 479

Query: 188 -SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
            SC K+TD+G+A+L  L  L  L+L  C  +T A L  L  L +L +L+LN C+  +D G
Sbjct: 480 NSCYKLTDAGLAHLTPLMALQHLDLSCCRNLTDAGLAHLRPLVALQHLDLNCCKNFTDAG 539

Query: 245 CEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 302
               + + +L+ LNL     +TD  L +L  L  L  LNL  C    D GL +L  L  L
Sbjct: 540 LTHLTPLVALQHLNLSCCRNLTDAGLAYLMPLVALSHLNLAGCHNFTDAGLAHLAPLVAL 599

Query: 303 KCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQ 359
           + L L D  ++ ++GL HL+ L  L+ ++LS    ++D  L  L  L +L  L+L +  +
Sbjct: 600 QHLNLGDCYRLTNAGLEHLTPLVALQHLDLSECEKLTDAGLTHLVPLVALTHLDLSECDK 659

Query: 360 ITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIK 417
           +TD GLA LT L  L HL+L +  ++TD+G A+L     L+ L +      T+ G+ H K
Sbjct: 660 LTDAGLAHLTPLEALQHLNLNWCDKLTDAGLAHLTPLLALQDLYLGYCKNFTEVGLAHFK 719

Query: 418 DLSSLTLLNL 427
             SS+  L+L
Sbjct: 720 --SSVAPLHL 727



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 58  SLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           +L  +DLS  D +TD+GL HL     LQ L+ N+C +++D GL HL  L  L  L     
Sbjct: 648 ALTHLDLSECDKLTDAGLAHLTPLEALQHLNLNWCDKLTDAGLAHLTPLLALQDLYLGYC 707

Query: 117 NAITAQGMKAFAGLINLVKLDLER 140
              T  G+  F   +  + L + R
Sbjct: 708 KNFTEVGLAHFKSSVAPLHLKIIR 731


>gi|325110089|ref|YP_004271157.1| hypothetical protein Plabr_3538 [Planctomyces brasiliensis DSM
           5305]
 gi|324970357|gb|ADY61135.1| leucine-rich repeat-containing protein [Planctomyces brasiliensis
           DSM 5305]
          Length = 451

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 109/355 (30%), Positives = 187/355 (52%), Gaps = 4/355 (1%)

Query: 82  NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
           N+ ++DF   ++ +D  L HL G   +  L +      T+ GM    GL +L  L LE+ 
Sbjct: 84  NVTAVDFR-SVEAADDALTHLTGTPQVQEL-YLFGPGFTSAGMSDLQGLNDLRLLSLEKT 141

Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
                GLV +  +  L +L ++  + ++D  +K L GL  L+ L +  + ++D G+  L 
Sbjct: 142 LIDDAGLVEIGRIPSLVALRLRQTD-VSDEGLKALGGLDKLRELDLRFTNISDEGLPALA 200

Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
            L  ++ + L+   ++   + +L+A+ ++  L LN   L++   E   +   L  L +  
Sbjct: 201 ELDSISTVKLDRTKISDEGVKTLAAIPTIRGLGLNLTNLTNTALEALKERSELVTLEMDD 260

Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
            +I D  +VHL+G++NL++L+L    +GDEG   +  L +LK L + DT +  +G  HL+
Sbjct: 261 TQIDDAGIVHLEGMSNLQNLSLRRDDVGDEGFEIIGKLKSLKRLSIRDTVISDAGCAHLA 320

Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
            L NLE+++L+ T I D  +  L GL +LK+L L   +IT  G A L +LT L  L+L  
Sbjct: 321 NLENLETLDLNETFIGDEGVAHLGGLKNLKTLELWFTRITPQGTAPLQNLTALRELNLED 380

Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
            RI DS    L     LR+L +    +TD G+ H+  L +L  ++L  N  ++D+
Sbjct: 381 TRIDDSALEPLAGLTELRTLNLKLTPITDEGLVHLHGLKNLEFVHLG-NTQVSDE 434



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 113/363 (31%), Positives = 178/363 (49%), Gaps = 26/363 (7%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           +QG+ + +VD    +  D  L HL     +Q L + F    +  G+  L+GL++L  LS 
Sbjct: 81  AQGN-VTAVDFRSVEAADDALTHLTGTPQVQEL-YLFGPGFTSAGMSDLQGLNDLRLLSL 138

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC------ 167
            +   I   G+     + +LV L L +      GL  L GL KL  L++++ N       
Sbjct: 139 EKT-LIDDAGLVEIGRIPSLVALRLRQTDVSDEGLKALGGLDKLRELDLRFTNISDEGLP 197

Query: 168 -----------------ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
                            I+D  +K L+ +  ++ L ++ + +T++ +  LK   +L  L 
Sbjct: 198 ALAELDSISTVKLDRTKISDEGVKTLAAIPTIRGLGLNLTNLTNTALEALKERSELVTLE 257

Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
           ++   +  A +  L  + +L  L+L R  + D+G E   K+ SLK L++    I+D    
Sbjct: 258 MDDTQIDDAGIVHLEGMSNLQNLSLRRDDVGDEGFEIIGKLKSLKRLSIRDTVISDAGCA 317

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
           HL  L NLE+L+L+   IGDEG+ +L GL NLK LEL  T++   G   L  LT L  +N
Sbjct: 318 HLANLENLETLDLNETFIGDEGVAHLGGLKNLKTLELWFTRITPQGTAPLQNLTALRELN 377

Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
           L  T I D +L  LAGL+ L++LNL    ITD GL  L  L  L  + L   +++D G  
Sbjct: 378 LEDTRIDDSALEPLAGLTELRTLNLKLTPITDEGLVHLHGLKNLEFVHLGNTQVSDEGTD 437

Query: 391 YLR 393
            L+
Sbjct: 438 ALK 440



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 105/321 (32%), Positives = 167/321 (52%), Gaps = 25/321 (7%)

Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
           D  +  L+G   ++ L +     T +G++ L+GL  L LL+LE   +  A L  +  + S
Sbjct: 97  DDALTHLTGTPQVQELYLFGPGFTSAGMSDLQGLNDLRLLSLEKTLIDDAGLVEIGRIPS 156

Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
           L  L L +  +SD+G +    +  L+ L+L F  I+DE L  L  L ++ ++ LD   I 
Sbjct: 157 LVALRLRQTDVSDEGLKALGGLDKLRELDLRFTNISDEGLPALAELDSISTVKLDRTKIS 216

Query: 290 DEGL-------------VNLTGLCN-----------LKCLELSDTQVGSSGLRHLSGLTN 325
           DEG+             +NLT L N           L  LE+ DTQ+  +G+ HL G++N
Sbjct: 217 DEGVKTLAAIPTIRGLGLNLTNLTNTALEALKERSELVTLEMDDTQIDDAGIVHLEGMSN 276

Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           L++++L    + D     +  L SLK L++    I+D G A L +L  L  LDL    I 
Sbjct: 277 LQNLSLRRDDVGDEGFEIIGKLKSLKRLSIRDTVISDAGCAHLANLENLETLDLNETFIG 336

Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
           D G A+L   KNL++LE+    +T  G   +++L++L  LNL ++  + D  LE ++GLT
Sbjct: 337 DEGVAHLGGLKNLKTLELWFTRITPQGTAPLQNLTALRELNL-EDTRIDDSALEPLAGLT 395

Query: 446 GLVSLNVSNSRITSAGLRHLN 466
            L +LN+  + IT  GL HL+
Sbjct: 396 ELRTLNLKLTPITDEGLVHLH 416



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 132/264 (50%), Gaps = 11/264 (4%)

Query: 212 EGCPVT-AACLDSLSALGSLFYLN---------LNRCQLSDDGCEKFSKIGSLKVLNLGF 261
           E  P   +A +++L A G++   N             + +DD     +    ++ L L  
Sbjct: 57  ESTPADDSAAVEALEAAGAILKTNAQGNVTAVDFRSVEAADDALTHLTGTPQVQELYLFG 116

Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
              T   +  L+GL +L  L+L+   I D GLV +  + +L  L L  T V   GL+ L 
Sbjct: 117 PGFTSAGMSDLQGLNDLRLLSLEKTLIDDAGLVEIGRIPSLVALRLRQTDVSDEGLKALG 176

Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
           GL  L  ++L FT ISD  L  LA L S+ ++ LD  +I+D G+  L ++  +  L L  
Sbjct: 177 GLDKLRELDLRFTNISDEGLPALAELDSISTVKLDRTKISDEGVKTLAAIPTIRGLGLNL 236

Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
             +T++    L+    L +LE+    + DAG+ H++ +S+L  L+L ++ ++ D+  E+I
Sbjct: 237 TNLTNTALEALKERSELVTLEMDDTQIDDAGIVHLEGMSNLQNLSLRRD-DVGDEGFEII 295

Query: 442 SGLTGLVSLNVSNSRITSAGLRHL 465
             L  L  L++ ++ I+ AG  HL
Sbjct: 296 GKLKSLKRLSIRDTVISDAGCAHL 319



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 95/195 (48%), Gaps = 25/195 (12%)

Query: 55  QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSL--------DFNFCI-------------- 92
           + S L+++++  + + D+G++HL+  SNLQ+L        D  F I              
Sbjct: 249 ERSELVTLEMDDTQIDDAGIVHLEGMSNLQNLSLRRDDVGDEGFEIIGKLKSLKRLSIRD 308

Query: 93  -QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
             ISD G  HL  L NL +L       I  +G+    GL NL  L+L        G   L
Sbjct: 309 TVISDAGCAHLANLENLETLDLNET-FIGDEGVAHLGGLKNLKTLELWFTRITPQGTAPL 367

Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
           + L  L  LN++    I DS ++PL+GLT L++L +  + +TD G+ +L GL+ L  ++L
Sbjct: 368 QNLTALRELNLEDTR-IDDSALEPLAGLTELRTLNLKLTPITDEGLVHLHGLKNLEFVHL 426

Query: 212 EGCPVTAACLDSLSA 226
               V+    D+L A
Sbjct: 427 GNTQVSDEGTDALKA 441


>gi|406835014|ref|ZP_11094608.1| hypothetical protein SpalD1_25335 [Schlesneria paludicola DSM
           18645]
          Length = 497

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 133/393 (33%), Positives = 201/393 (51%), Gaps = 6/393 (1%)

Query: 77  LKDCSNLQSLDF-NF-CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
           L   S+L +L F NF   QI+   L  L GL NLTSL F  N  I+ +G+     L NL 
Sbjct: 96  LMPFSHLTTLVFSNFKSSQITSARLSDLSGLKNLTSLHFE-NTEISNEGIHELQELKNLT 154

Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
            L L        GL NL+ + KL +L++   N I+D   K L  L +L SL +    + D
Sbjct: 155 TLSLHTTHVTDAGLRNLREVSKLTTLSLSG-NSISDDGFKELGELKHLSSLSLRLENIDD 213

Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
             +  +  L+ L  L+L    +T + L  L  + +L  L L   +++D G +    + +L
Sbjct: 214 VQLDEISKLENLKTLSLHVPSITDSELKQLRTVKNLTKLFLINSKITDAGLKPLLDLKNL 273

Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVG 313
             L+L   +ITD  L  +  L NL SL L+ CG I D G   L  + NLK L L+   + 
Sbjct: 274 TDLDLSSTQITDAGLKEIGQLENLTSLYLEGCGGITDVGFRELRNIKNLKRLALARCGIT 333

Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
             G++ L  L +LE ++LS T I+D  ++++ GL++L +L L    ITD GL  +  L  
Sbjct: 334 DLGMKGLGQLKSLELLDLSRTPITDHGIQEIGGLTNLSTLWLLGSNITDLGLREINGLEN 393

Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCN 432
           L  L L  A ITD+G   L  F N+  L +    G+TDAG+K ++DL  L++  L    N
Sbjct: 394 LKELYLKSAFITDAGMKELGKFHNMNMLHLIQCDGITDAGLKELRDLKKLSMFELYGCRN 453

Query: 433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           +TD  ++ +     L  LNV  +++T +G+  L
Sbjct: 454 VTDAGIDELKEHKQLTILNVGATQVTVSGVNKL 486



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 190/367 (51%), Gaps = 10/367 (2%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           +L S+    +++++ G+  L++  NL +L  +    ++D GL +LR +S LT+LS    N
Sbjct: 128 NLTSLHFENTEISNEGIHELQELKNLTTLSLH-TTHVTDAGLRNLREVSKLTTLSLS-GN 185

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC--ITDSDMKP 175
           +I+  G K    L +L  L L R   I    V L  + KLE+L     +   ITDS++K 
Sbjct: 186 SISDDGFKELGELKHLSSLSL-RLENIDD--VQLDEISKLENLKTLSLHVPSITDSELKQ 242

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           L  + NL  L +  SK+TD+G+  L  L+ LT L+L    +T A L  +  L +L  L L
Sbjct: 243 LRTVKNLTKLFLINSKITDAGLKPLLDLKNLTDLDLSSTQITDAGLKEIGQLENLTSLYL 302

Query: 236 NRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
             C  ++D G  +   I +LK L L    ITD  +  L  L +LE L+L    I D G+ 
Sbjct: 303 EGCGGITDVGFRELRNIKNLKRLALARCGITDLGMKGLGQLKSLELLDLSRTPITDHGIQ 362

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
            + GL NL  L L  + +   GLR ++GL NL+ + L    I+D  +++L    ++  L+
Sbjct: 363 EIGGLTNLSTLWLLGSNITDLGLREINGLENLKELYLKSAFITDAGMKELGKFHNMNMLH 422

Query: 355 L-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
           L     ITD GL  L  L  L+  +L+G R +TD+G   L+  K L  L +    +T +G
Sbjct: 423 LIQCDGITDAGLKELRDLKKLSMFELYGCRNVTDAGIDELKEHKQLTILNVGATQVTVSG 482

Query: 413 VKHIKDL 419
           V  +K+L
Sbjct: 483 VNKLKEL 489



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 106/295 (35%), Positives = 155/295 (52%), Gaps = 2/295 (0%)

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           + P S LT L       S++T + ++ L GL+ LT L+ E   ++   +  L  L +L  
Sbjct: 96  LMPFSHLTTLVFSNFKSSQITSARLSDLSGLKNLTSLHFENTEISNEGIHELQELKNLTT 155

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           L+L+   ++D G     ++  L  L+L  N I+D+    L  L +L SL+L    I D  
Sbjct: 156 LSLHTTHVTDAGLRNLREVSKLTTLSLSGNSISDDGFKELGELKHLSSLSLRLENIDDVQ 215

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
           L  ++ L NLK L L    +  S L+ L  + NL  + L  + I+D  L+ L  L +L  
Sbjct: 216 LDEISKLENLKTLSLHVPSITDSELKQLRTVKNLTKLFLINSKITDAGLKPLLDLKNLTD 275

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
           L+L + QITD GL  +  L  LT L L G   ITD G   LRN KNL+ L +   G+TD 
Sbjct: 276 LDLSSTQITDAGLKEIGQLENLTSLYLEGCGGITDVGFRELRNIKNLKRLALARCGITDL 335

Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
           G+K +  L SL LL+LS+   +TD  ++ I GLT L +L +  S IT  GLR +N
Sbjct: 336 GMKGLGQLKSLELLDLSR-TPITDHGIQEIGGLTNLSTLWLLGSNITDLGLREIN 389



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 92/260 (35%), Positives = 126/260 (48%), Gaps = 12/260 (4%)

Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
           L G PVT    D         +LNL            FS + +L   N   ++IT   L 
Sbjct: 72  LPGRPVTTIYFDGHGKFNEK-HLNL---------LMPFSHLTTLVFSNFKSSQITSARLS 121

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
            L GL NL SL+ ++  I +EG+  L  L NL  L L  T V  +GLR+L  ++ L +++
Sbjct: 122 DLSGLKNLTSLHFENTEISNEGIHELQELKNLTTLSLHTTHVTDAGLRNLREVSKLTTLS 181

Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
           LS   ISD   ++L  L  L SL+L    I D  L  ++ L  L  L L    ITDS   
Sbjct: 182 LSGNSISDDGFKELGELKHLSSLSLRLENIDDVQLDEISKLENLKTLSLHVPSITDSELK 241

Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
            LR  KNL  L +    +TDAG+K + DL +LT L+LS +  +TD  L+ I  L  L SL
Sbjct: 242 QLRTVKNLTKLFLINSKITDAGLKPLLDLKNLTDLDLS-STQITDAGLKEIGQLENLTSL 300

Query: 451 NVSN-SRITSAGLRHLNHAR 469
            +     IT  G R L + +
Sbjct: 301 YLEGCGGITDVGFRELRNIK 320



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 90/186 (48%), Gaps = 6/186 (3%)

Query: 20  LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK 78
           +T+V     R+   L+ L L +  G+ D  M  +  Q  SL  +DLS + +TD G+  + 
Sbjct: 308 ITDVGFRELRNIKNLKRLALARC-GITDLGMKGLG-QLKSLELLDLSRTPITDHGIQEIG 365

Query: 79  DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
             +NL +L +     I+D GL  + GL NL  L + ++  IT  GMK      N+  L L
Sbjct: 366 GLTNLSTL-WLLGSNITDLGLREINGLENLKEL-YLKSAFITDAGMKELGKFHNMNMLHL 423

Query: 139 ERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
            +C  I   GL  L+ L KL    +  C  +TD+ +  L     L  L +  ++VT SG+
Sbjct: 424 IQCDGITDAGLKELRDLKKLSMFELYGCRNVTDAGIDELKEHKQLTILNVGATQVTVSGV 483

Query: 198 AYLKGL 203
             LK L
Sbjct: 484 NKLKEL 489


>gi|46447199|ref|YP_008564.1| hypothetical protein pc1565 [Candidatus Protochlamydia amoebophila
            UWE25]
 gi|46400840|emb|CAF24289.1| hypothetical protein pc1565 [Candidatus Protochlamydia amoebophila
            UWE25]
          Length = 1143

 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 139/365 (38%), Positives = 201/365 (55%), Gaps = 12/365 (3%)

Query: 20   LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
            LT+  L A +DC  L+ L L +     D  +  + S   +L  +DL G   +TDSGL HL
Sbjct: 767  LTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHL-SPLVALQHLDLGGCYKITDSGLAHL 825

Query: 78   KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
                 LQ LD   C +I+D GL +L  L  L  L+  R   +T  G+   + L+ L  LD
Sbjct: 826  SRLVALQHLDLGGCYEITDSGLTYLSRLVALQHLNLNRCVCLTDDGLAYLSHLVALQYLD 885

Query: 138  LERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDS 195
            L+RC +I   GL +L  L+ L+ LN+  CN +TDS +  LS LT+LK L +  C+K+TDS
Sbjct: 886  LDRCWKITDRGLAHLSSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKLTDS 945

Query: 196  GIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGS 253
            G+A+L  L  L  LNL  C  +T   L  LS L +L +L+L  C +++D G    S + +
Sbjct: 946  GLAHLSLLVNLQYLNLNRCNNLTDRGLAHLSHLVALQHLDLGECYKITDSGLAHLSLLVN 1005

Query: 254  LKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDT 310
            L+ LNL   + +TD  L HL  L  L+ LNL+ C  + D+GL  L+ L  L+ L L S  
Sbjct: 1006 LQYLNLNRCDNLTDRGLAHLSRLVTLQHLNLNCCVCLTDDGLAYLSPLVALRHLNLRSCD 1065

Query: 311  QVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL 368
             + S+GL HL+ L  L+ +NLS+   ++D  L  L  L+SLK L+L +    T +GLA  
Sbjct: 1066 NLTSAGLAHLTPLIALQYLNLSYCDSLNDNGLTHLTRLASLKHLDLSECPYFTISGLAHF 1125

Query: 369  TSLTG 373
             +L  
Sbjct: 1126 KALAA 1130



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 128/320 (40%), Positives = 179/320 (55%), Gaps = 10/320 (3%)

Query: 68  DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           + TD+GL HL     LQ LD   C +I+D GL +L  L  L  L+      +T  G+   
Sbjct: 226 NFTDAGLAHLSRLVALQHLDLGGCYKITDSGLTYLSRLVALQHLNLNCCVCLTDDGLAYL 285

Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
           + L+ L  LDL  C +I   GL +L  L+ L+ LN+  CN +TDS +  LS LT+LK L 
Sbjct: 286 SHLVALQHLDLGECYKITDSGLAHLSSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLD 345

Query: 187 I-SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDD 243
           +  C+K+TDSG+A+L  L  L  LNL  C  +T   L  LS L +L YL+L  C +L+  
Sbjct: 346 LRDCAKLTDSGLAHLSLLVNLQYLNLNRCYNLTDRGLSHLSHLVALQYLDLGLCKKLTSS 405

Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN 301
           G    S + +L+ L+L    EITD  L HL  L  L+ LNL+ C  + D+GL  L+ L  
Sbjct: 406 GLAHLSPLVALQYLDLDRCGEITDRGLAHLSRLVALQHLNLNCCACLTDDGLAYLSPLVA 465

Query: 302 LKCLELSDT-QVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DAR 358
           L+ L L     + S+GL HL+ L  L+ +NLS+   ++D  L  L  L+SLK L+L +  
Sbjct: 466 LRHLNLRCCGNLTSAGLAHLTPLIALQYLNLSYCDSLNDNGLTHLTRLASLKHLDLSECP 525

Query: 359 QITDTGLAALTSL-TGLTHL 377
             TD+GLA  T+L T LTH 
Sbjct: 526 YFTDSGLAHFTALATSLTHF 545



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 142/382 (37%), Positives = 199/382 (52%), Gaps = 21/382 (5%)

Query: 96   DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGL 154
            +GG+E         SL F  N  +T   + A     NL  L L  C      GL +L  L
Sbjct: 753  EGGIE---------SLDFSNNAYLTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHLSPL 803

Query: 155  MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEG 213
            + L+ L++  C  ITDS +  LS L  L+ L +  C ++TDSG+ YL  L  L  LNL  
Sbjct: 804  VALQHLDLGGCYKITDSGLAHLSRLVALQHLDLGGCYEITDSGLTYLSRLVALQHLNLNR 863

Query: 214  CP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLV 270
            C  +T   L  LS L +L YL+L+RC +++D G    S + +L+ LNLG  N +TD  L 
Sbjct: 864  CVCLTDDGLAYLSHLVALQYLDLDRCWKITDRGLAHLSSLLALQHLNLGCCNNLTDSGLA 923

Query: 271  HLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLES 328
            HL  LT+L+ L+L  C  + D GL +L+ L NL+ L L+    +   GL HLS L  L+ 
Sbjct: 924  HLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLNLNRCNNLTDRGLAHLSHLVALQH 983

Query: 329  INL-SFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-IT 385
            ++L     I+D  L  L+ L +L+ LNL+    +TD GLA L+ L  L HL+L     +T
Sbjct: 984  LDLGECYKITDSGLAHLSLLVNLQYLNLNRCDNLTDRGLAHLSRLVTLQHLNLNCCVCLT 1043

Query: 386  DSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
            D G AYL     LR L +     LT AG+ H+  L +L  LNLS   +L D  L  ++ L
Sbjct: 1044 DDGLAYLSPLVALRHLNLRSCDNLTSAGLAHLTPLIALQYLNLSYCDSLNDNGLTHLTRL 1103

Query: 445  TGLVSLNVSN-SRITSAGLRHL 465
              L  L++S     T +GL H 
Sbjct: 1104 ASLKHLDLSECPYFTISGLAHF 1125



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 126/331 (38%), Positives = 178/331 (53%), Gaps = 11/331 (3%)

Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 204
             L+ LK    L+ L +  C   TD+ +  LS L  L+ L +  C K+TDSG+ YL  L 
Sbjct: 205 AHLLALKDCKNLKVLRLHECRNFTDAGLAHLSRLVALQHLDLGGCYKITDSGLTYLSRLV 264

Query: 205 KLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF- 261
            L  LNL  C  +T   L  LS L +L +L+L  C +++D G    S + +L+ LNLG  
Sbjct: 265 ALQHLNLNCCVCLTDDGLAYLSHLVALQHLDLGECYKITDSGLAHLSSLLALQHLNLGCC 324

Query: 262 NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRH 319
           N +TD  L HL  LT+L+ L+L  C  + D GL +L+ L NL+ L L+    +   GL H
Sbjct: 325 NNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLNLNRCYNLTDRGLSH 384

Query: 320 LSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHL 377
           LS L  L+ ++L     ++   L  L+ L +L+ L+LD   +ITD GLA L+ L  L HL
Sbjct: 385 LSHLVALQYLDLGLCKKLTSSGLAHLSPLVALQYLDLDRCGEITDRGLAHLSRLVALQHL 444

Query: 378 DL-FGARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
           +L   A +TD G AYL     LR L + C G LT AG+ H+  L +L  LNLS   +L D
Sbjct: 445 NLNCCACLTDDGLAYLSPLVALRHLNLRCCGNLTSAGLAHLTPLIALQYLNLSYCDSLND 504

Query: 436 KTLELISGLTGLVSLNVSN-SRITSAGLRHL 465
             L  ++ L  L  L++S     T +GL H 
Sbjct: 505 NGLTHLTRLASLKHLDLSECPYFTDSGLAHF 535



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 87/222 (39%), Positives = 126/222 (56%), Gaps = 7/222 (3%)

Query: 67   SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
            +++TDSGL HL   ++L+ LD   C +++D GL HL  L NL  L+  R N +T +G+  
Sbjct: 915  NNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLNLNRCNNLTDRGLAH 974

Query: 127  FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
             + L+ L  LDL  C +I   GL +L  L+ L+ LN+  C+ +TD  +  LS L  L+ L
Sbjct: 975  LSHLVALQHLDLGECYKITDSGLAHLSLLVNLQYLNLNRCDNLTDRGLAHLSRLVTLQHL 1034

Query: 186  QISCSK-VTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSD 242
             ++C   +TD G+AYL  L  L  LNL  C  +T+A L  L+ L +L YLNL+ C  L+D
Sbjct: 1035 NLNCCVCLTDDGLAYLSPLVALRHLNLRSCDNLTSAGLAHLTPLIALQYLNLSYCDSLND 1094

Query: 243  DGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNL 283
            +G    +++ SLK L+L      T   L H K L    SLNL
Sbjct: 1095 NGLTHLTRLASLKHLDLSECPYFTISGLAHFKALA--ASLNL 1134



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/215 (37%), Positives = 120/215 (55%), Gaps = 5/215 (2%)

Query: 67  SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
           +++TDSGL HL   ++L+ LD   C +++D GL HL  L NL  L+  R   +T +G+  
Sbjct: 325 NNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLNLNRCYNLTDRGLSH 384

Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
            + L+ L  LDL  C ++   GL +L  L+ L+ L++  C  ITD  +  LS L  L+ L
Sbjct: 385 LSHLVALQYLDLGLCKKLTSSGLAHLSPLVALQYLDLDRCGEITDRGLAHLSRLVALQHL 444

Query: 186 QISCSK-VTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSD 242
            ++C   +TD G+AYL  L  L  LNL  C  +T+A L  L+ L +L YLNL+ C  L+D
Sbjct: 445 NLNCCACLTDDGLAYLSPLVALRHLNLRCCGNLTSAGLAHLTPLIALQYLNLSYCDSLND 504

Query: 243 DGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLT 276
           +G    +++ SLK L+L      TD  L H   L 
Sbjct: 505 NGLTHLTRLASLKHLDLSECPYFTDSGLAHFTALA 539



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/211 (38%), Positives = 117/211 (55%), Gaps = 7/211 (3%)

Query: 264 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLS 321
           +TD  L+ LK   NL+ L L  C    D GL +L+ L  L+ L+L    ++  SGL HLS
Sbjct: 767 LTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHLSPLVALQHLDLGGCYKITDSGLAHLS 826

Query: 322 GLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL 379
            L  L+ ++L     I+D  L  L+ L +L+ LNL+    +TD GLA L+ L  L +LDL
Sbjct: 827 RLVALQHLDLGGCYEITDSGLTYLSRLVALQHLNLNRCVCLTDDGLAYLSHLVALQYLDL 886

Query: 380 FGA-RITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
               +ITD G A+L +   L+ L + C   LTD+G+ H+  L+SL  L+L     LTD  
Sbjct: 887 DRCWKITDRGLAHLSSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSG 946

Query: 438 LELISGLTGLVSLNVSN-SRITSAGLRHLNH 467
           L  +S L  L  LN++  + +T  GL HL+H
Sbjct: 947 LAHLSLLVNLQYLNLNRCNNLTDRGLAHLSH 977



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/210 (38%), Positives = 125/210 (59%), Gaps = 9/210 (4%)

Query: 264 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLS 321
           +TD  L+ LK   NL+ L L  C    D GL +L+ L  L+ L+L    ++  SGL +LS
Sbjct: 202 LTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHLSRLVALQHLDLGGCYKITDSGLTYLS 261

Query: 322 GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL 379
            L  L+ +NL+    ++D  L  L+ L +L+ L+L +  +ITD+GLA L+SL  L HL+L
Sbjct: 262 RLVALQHLNLNCCVCLTDDGLAYLSHLVALQHLDLGECYKITDSGLAHLSSLLALQHLNL 321

Query: 380 -FGARITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
                +TDSG A+L +  +L+ L++  C   LTD+G+ H+  L +L  LNL++  NLTD+
Sbjct: 322 GCCNNLTDSGLAHLSHLTSLKHLDLRDCAK-LTDSGLAHLSLLVNLQYLNLNRCYNLTDR 380

Query: 437 TLELISGLTGLVSLNVS-NSRITSAGLRHL 465
            L  +S L  L  L++    ++TS+GL HL
Sbjct: 381 GLSHLSHLVALQYLDLGLCKKLTSSGLAHL 410



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 75/197 (38%), Positives = 109/197 (55%), Gaps = 7/197 (3%)

Query: 278 LESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FT 334
           +ESL+  ++  + D  L+ L    NLK L L + +    +GL HLS L  L+ ++L    
Sbjct: 191 IESLDFSNNAYLTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHLSRLVALQHLDLGGCY 250

Query: 335 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 392
            I+D  L  L+ L +L+ LNL+    +TD GLA L+ L  L HLDL    +ITDSG A+L
Sbjct: 251 KITDSGLTYLSRLVALQHLNLNCCVCLTDDGLAYLSHLVALQHLDLGECYKITDSGLAHL 310

Query: 393 RNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
            +   L+ L + C   LTD+G+ H+  L+SL  L+L     LTD  L  +S L  L  LN
Sbjct: 311 SSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLN 370

Query: 452 VSN-SRITSAGLRHLNH 467
           ++    +T  GL HL+H
Sbjct: 371 LNRCYNLTDRGLSHLSH 387



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 37/76 (48%)

Query: 65   SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
            S  ++T +GL HL     LQ L+ ++C  ++D GL HL  L++L  L        T  G+
Sbjct: 1063 SCDNLTSAGLAHLTPLIALQYLNLSYCDSLNDNGLTHLTRLASLKHLDLSECPYFTISGL 1122

Query: 125  KAFAGLINLVKLDLER 140
              F  L   + L + R
Sbjct: 1123 AHFKALAASLNLKIIR 1138


>gi|46446626|ref|YP_007991.1| hypothetical protein pc0992 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400267|emb|CAF23716.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 583

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 141/420 (33%), Positives = 212/420 (50%), Gaps = 68/420 (16%)

Query: 47  KWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
           ++  +I    + + ++D S  + +TD+ L+ LK+C NL+ L    C+ I+D GL HL   
Sbjct: 216 EFEKIINHFSNEIEALDFSNNAHLTDAHLLALKNCENLKVLHLEACLAITDDGLAHL--- 272

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKW 164
                                 A L+ L  LDL  C  +   GL +L  L  L+ L+++ 
Sbjct: 273 ----------------------APLVALQHLDLSDCENLTDVGLAHLTPLTALQHLDLRG 310

Query: 165 CNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
           C   TD+ +  L+ LT L+ L +S CS  TD+G+A+L  L  L  L+L GC +T A L  
Sbjct: 311 C-YFTDAGLAHLTPLTALQHLNLSFCSNATDAGLAHLTPLTALQHLDLRGCYLTDAGLAH 369

Query: 224 LSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESL 281
           L+ L  L +L+L  C+ L+D G      + +L+ LNL +   +TD  L HL  LT L+ L
Sbjct: 370 LTPLTGLQHLDLIGCKDLTDAGLAHLRPLTALQHLNLNWCRNLTDAGLAHLTPLTALQHL 429

Query: 282 NLDSCG-IGDEGLVNLTGLCNLK------CLELSDTQVGSSGLRHLSGLTNLESINLS-F 333
           +L  C  I D+GL +LT L  L+      C +L+D     +GL HL+ LT L+ +NL+ +
Sbjct: 430 DLSFCSNITDDGLAHLTLLTTLQHLNLSGCYKLTD-----AGLAHLTLLTGLQHLNLNWY 484

Query: 334 TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
             ++D  L  L  L+ L+ L L D + +TD GLA LT LT L HL+L G           
Sbjct: 485 KNLTDAGLAHLTPLAGLQYLALTDCKNLTDAGLAHLTPLTALQHLNLSGCY--------- 535

Query: 393 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
                          LTDAG+ H+  L++L  L+LS   NLTD  L+    L   ++L +
Sbjct: 536 --------------KLTDAGLAHLTSLTALQYLDLSYCMNLTDDGLDRFKTLATSLNLEI 581



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 122/353 (34%), Positives = 176/353 (49%), Gaps = 30/353 (8%)

Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN 166
           + +L F  N  +T   + A     NL  L LE C  I   GL +L  L+ L+ L++  C 
Sbjct: 228 IEALDFSNNAHLTDAHLLALKNCENLKVLHLEACLAITDDGLAHLAPLVALQHLDLSDCE 287

Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLS 225
            +TD  +  L+ LT L+ L +     TD+G+A+L  L  L  LNL  C   T A L  L+
Sbjct: 288 NLTDVGLAHLTPLTALQHLDLRGCYFTDAGLAHLTPLTALQHLNLSFCSNATDAGLAHLT 347

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLD 284
            L +L +L+L  C L+D G    + +  L+ L+L G  ++TD  L HL+ LT L+ LNL+
Sbjct: 348 PLTALQHLDLRGCYLTDAGLAHLTPLTGLQHLDLIGCKDLTDAGLAHLRPLTALQHLNLN 407

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG--ISDGSLR 342
            C        NLT                 +GL HL+ LT L+ ++LSF      DG   
Sbjct: 408 WCR-------NLT----------------DAGLAHLTPLTALQHLDLSFCSNITDDGLAH 444

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSL 401
                +          ++TD GLA LT LTGL HL+L +   +TD+G A+L     L+ L
Sbjct: 445 LTLLTTLQHLNLSGCYKLTDAGLAHLTLLTGLQHLNLNWYKNLTDAGLAHLTPLAGLQYL 504

Query: 402 EICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
            +     LTDAG+ H+  L++L  LNLS    LTD  L  ++ LT L  L++S
Sbjct: 505 ALTDCKNLTDAGLAHLTPLTALQHLNLSGCYKLTDAGLAHLTSLTALQYLDLS 557



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 120/319 (37%), Positives = 179/319 (56%), Gaps = 9/319 (2%)

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
           ++E+L+      +TD+ +  L    NLK L + +C  +TD G+A+L  L  L  L+L  C
Sbjct: 227 EIEALDFSNNAHLTDAHLLALKNCENLKVLHLEACLAITDDGLAHLAPLVALQHLDLSDC 286

Query: 215 P-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL 272
             +T   L  L+ L +L +L+L  C  +D G    + + +L+ LNL F +  TD  L HL
Sbjct: 287 ENLTDVGLAHLTPLTALQHLDLRGCYFTDAGLAHLTPLTALQHLNLSFCSNATDAGLAHL 346

Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINL 331
             LT L+ L+L  C + D GL +LT L  L+ L+L   + +  +GL HL  LT L+ +NL
Sbjct: 347 TPLTALQHLDLRGCYLTDAGLAHLTPLTGLQHLDLIGCKDLTDAGLAHLRPLTALQHLNL 406

Query: 332 SF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG-ARITDSG 388
           ++   ++D  L  L  L++L+ L+L     ITD GLA LT LT L HL+L G  ++TD+G
Sbjct: 407 NWCRNLTDAGLAHLTPLTALQHLDLSFCSNITDDGLAHLTLLTTLQHLNLSGCYKLTDAG 466

Query: 389 AAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
            A+L     L+ L +     LTDAG+ H+  L+ L  L L+   NLTD  L  ++ LT L
Sbjct: 467 LAHLTLLTGLQHLNLNWYKNLTDAGLAHLTPLAGLQYLALTDCKNLTDAGLAHLTPLTAL 526

Query: 448 VSLNVSN-SRITSAGLRHL 465
             LN+S   ++T AGL HL
Sbjct: 527 QHLNLSGCYKLTDAGLAHL 545



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/226 (39%), Positives = 130/226 (57%), Gaps = 11/226 (4%)

Query: 247 KFSKI-----GSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
           +F KI       ++ L+   N  +TD  L+ LK   NL+ L+L++C  I D+GL +L  L
Sbjct: 216 EFEKIINHFSNEIEALDFSNNAHLTDAHLLALKNCENLKVLHLEACLAITDDGLAHLAPL 275

Query: 300 CNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-A 357
             L+ L+LSD + +   GL HL+ LT L+ ++L     +D  L  L  L++L+ LNL   
Sbjct: 276 VALQHLDLSDCENLTDVGLAHLTPLTALQHLDLRGCYFTDAGLAHLTPLTALQHLNLSFC 335

Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 416
              TD GLA LT LT L HLDL G  +TD+G A+L     L+ L++ G   LTDAG+ H+
Sbjct: 336 SNATDAGLAHLTPLTALQHLDLRGCYLTDAGLAHLTPLTGLQHLDLIGCKDLTDAGLAHL 395

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAG 461
           + L++L  LNL+   NLTD  L  ++ LT L  L++S  S IT  G
Sbjct: 396 RPLTALQHLNLNWCRNLTDAGLAHLTPLTALQHLDLSFCSNITDDG 441



 Score = 42.0 bits (97), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 39/73 (53%)

Query: 68  DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           ++TD+GL HL   + LQ L+ + C +++D GL HL  L+ L  L       +T  G+  F
Sbjct: 511 NLTDAGLAHLTPLTALQHLNLSGCYKLTDAGLAHLTSLTALQYLDLSYCMNLTDDGLDRF 570

Query: 128 AGLINLVKLDLER 140
             L   + L++ R
Sbjct: 571 KTLATSLNLEIIR 583


>gi|383455271|ref|YP_005369260.1| hypothetical protein COCOR_03284 [Corallococcus coralloides DSM
           2259]
 gi|380733131|gb|AFE09133.1| leucine-rich repeat-containing protein [Corallococcus coralloides
           DSM 2259]
          Length = 614

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 136/407 (33%), Positives = 205/407 (50%), Gaps = 5/407 (1%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           +S++S+ LS + + D  L  L + + LQ+L  +   +++D GL  L+G+ +L  L     
Sbjct: 129 TSVVSLHLSETALGDEHLAALANATRLQALHLD-GTRVTDAGLASLQGMPHLAVLRLD-A 186

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
            A++ +G+   A L  L +L L   +    GL  L    +LE L++     + D+ +  L
Sbjct: 187 TAVSDRGLALLASLTTLRRLSLSGTSVSPRGLGLLAAQTELEWLDLS-DTTVDDTVLASL 245

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
            G   L++L +S + VT++G+  L+ +  L  L L    V+ A L  L AL  L  L+L 
Sbjct: 246 PG-ERLRTLVMSGTHVTNAGLGALRRMPALRWLGLARTSVSDAGLAHLGALRMLDALHLG 304

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
              ++D G    +++ +L+VL L    I    + HL GLT LE L+LD   IG+  L +L
Sbjct: 305 STGVTDAGLIHLARLPALRVLVLSKTRIRGPGVRHLAGLTQLEVLHLDDTSIGNAALRHL 364

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
            GL +L+ LELS T V  SGL  LSGL  LES+ LS   + D SL  L  L  L  L+L 
Sbjct: 365 QGLQHLRDLELSRTAVTGSGLPALSGLQALESLGLSGLALEDASLAALEPLERLSRLDLS 424

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
           A +I    L  L S   L HLDL      D   A L+ F  L+SL      LTD G+  +
Sbjct: 425 ATRIGPEALKQLGSRMVLRHLDLSRTDFNDGWVATLQTFTQLQSLRAIRTILTDLGLGQL 484

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
            +L  L  L +S N  ++   L  +  L  LV L++  + +T  G R
Sbjct: 485 SELRELESLQVSGN-PISGSGLVPLQKLPHLVKLDLGGTWMTDDGAR 530



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 126/396 (31%), Positives = 183/396 (46%), Gaps = 57/396 (14%)

Query: 47  KWMD---------VIAS-QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD 96
           +W+D         V+AS  G  L ++ +SG+ VT++GL  L+    L+ L       +SD
Sbjct: 228 EWLDLSDTTVDDTVLASLPGERLRTLVMSGTHVTNAGLGALRRMPALRWLGLART-SVSD 286

Query: 97  GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC-----TRIHG-GLVN 150
            GL HL  L  L +L         A       GLI+L +L   R      TRI G G+ +
Sbjct: 287 AGLAHLGALRMLDALHLGSTGVTDA-------GLIHLARLPALRVLVLSKTRIRGPGVRH 339

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
           L GL +LE L++     I ++ ++ L GL +L+ L++S + VT SG+  L GLQ L  L 
Sbjct: 340 LAGLTQLEVLHLD-DTSIGNAALRHLQGLQHLRDLELSRTAVTGSGLPALSGLQALESLG 398

Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN------LGFNE- 263
           L G  +  A L +L  L  L  L+L+  ++   G E   ++GS  VL         FN+ 
Sbjct: 399 LSGLALEDASLAALEPLERLSRLDLSATRI---GPEALKQLGSRMVLRHLDLSRTDFNDG 455

Query: 264 --------------------ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
                               +TD  L  L  L  LESL +    I   GLV L  L +L 
Sbjct: 456 WVATLQTFTQLQSLRAIRTILTDLGLGQLSELRELESLQVSGNPISGSGLVPLQKLPHLV 515

Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
            L+L  T +   G R L+G   L  ++L+ T I D SL  L G  SL +L L   ++TD 
Sbjct: 516 KLDLGGTWMTDDGARLLAGFEKLSWLSLAGTRIGDESLVHLPG--SLLTLYLLRTKVTDA 573

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
           G+ AL  L  L  +DL    ++++  A L     LR
Sbjct: 574 GMPALHRLPLLREIDLRETAVSEAARATLVREHGLR 609



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 116/397 (29%), Positives = 187/397 (47%), Gaps = 7/397 (1%)

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
           LSG+ V+  GL  L   + L+ LD +    + D  L  L G   L +L     + +T  G
Sbjct: 208 LSGTSVSPRGLGLLAAQTELEWLDLSDTT-VDDTVLASLPG-ERLRTLVMSGTH-VTNAG 264

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
           + A   +  L  L L R +    GL +L  L  L++L++     +TD+ +  L+ L  L+
Sbjct: 265 LGALRRMPALRWLGLARTSVSDAGLAHLGALRMLDALHLG-STGVTDAGLIHLARLPALR 323

Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
            L +S +++   G+ +L GL +L +L+L+   +  A L  L  L  L  L L+R  ++  
Sbjct: 324 VLVLSKTRIRGPGVRHLAGLTQLEVLHLDDTSIGNAALRHLQGLQHLRDLELSRTAVTGS 383

Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
           G    S + +L+ L L    + D  L  L+ L  L  L+L +  IG E L  L     L+
Sbjct: 384 GLPALSGLQALESLGLSGLALEDASLAALEPLERLSRLDLSATRIGPEALKQLGSRMVLR 443

Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
            L+LS T      +  L   T L+S+    T ++D  L +L+ L  L+SL +    I+ +
Sbjct: 444 HLDLSRTDFNDGWVATLQTFTQLQSLRAIRTILTDLGLGQLSELRELESLQVSGNPISGS 503

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
           GL  L  L  L  LDL G  +TD GA  L  F+ L  L + G  + D  + H+   S LT
Sbjct: 504 GLVPLQKLPHLVKLDLGGTWMTDDGARLLAGFEKLSWLSLAGTRIGDESLVHLPG-SLLT 562

Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
           L  L     +TD  +  +  L  L  +++  + ++ A
Sbjct: 563 LYLL--RTKVTDAGMPALHRLPLLREIDLRETAVSEA 597



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 29/245 (11%)

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLD 284
           G  +   L   + +D      + +   +V  L F      T   L  L   T++ SL+L 
Sbjct: 78  GDWYAEPLEPVRTADQAQALAAVLREYRVPGLRFGAQGLPTPSLLALLVKDTSVVSLHLS 137

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
              +GDE L  L     L+ L L  T+V  +GL  L G+ +L  + L  T +SD  L  L
Sbjct: 138 ETALGDEHLAALANATRLQALHLDGTRVTDAGLASLQGMPHLAVLRLDATAVSDRGLALL 197

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
           A L++L+ L+L    ++  GL  L + T L  LDL    + D+  A L   + LR+L + 
Sbjct: 198 ASLTTLRRLSLSGTSVSPRGLGLLAAQTELEWLDLSDTTVDDTVLASLPG-ERLRTLVMS 256

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
           G  +T+AG+  ++ + +L  L L++                           ++ AGL H
Sbjct: 257 GTHVTNAGLGALRRMPALRWLGLARTS-------------------------VSDAGLAH 291

Query: 465 LNHAR 469
           L   R
Sbjct: 292 LGALR 296


>gi|168705463|ref|ZP_02737740.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 362

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 169/303 (55%), Gaps = 3/303 (0%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
             +TD+D+K L+ LT L  L +S + VTD+G+ +L  L KLT LNL G  +T A    L+
Sbjct: 53  KTVTDADLKALAPLTGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLGGTKITDAGPTELA 112

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            L  L  LNL+  Q++D G ++ +++ +L  L+L    +T+  L HL  LT + SL+L  
Sbjct: 113 PLAVLTDLNLSSTQVTDAGLKEVARLRTLVALDLSHTGVTNAGLGHLT-LTKMRSLSLRG 171

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
             I D GL  +  + ++  L+LS T +   GL+ L     +  ++LS T ++   L++LA
Sbjct: 172 TKITDGGLREIR-IMSVSGLDLSGTALTDEGLKDLGLFEEITGLDLSDTKVTSNGLKELA 230

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
              +LK L+L   ++ D GL  L  L  L  L L G  +T +G   L   + LR LE+ G
Sbjct: 231 SQPTLKFLSLSRTKVGDAGLKHLAPLKRLESLYLNGTGVTGTGVKELAPLERLRILELTG 290

Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
             +T  G+KH+  L  L +L LS +  +TD+ L+ I+ L  L++L++  +++T AG+  L
Sbjct: 291 TMVTGGGLKHLSTLPRLAILRLS-DAAVTDEGLKDIAHLKTLLALDLYRTKVTGAGVAEL 349

Query: 466 NHA 468
             A
Sbjct: 350 RKA 352



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/303 (33%), Positives = 155/303 (51%), Gaps = 3/303 (0%)

Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
           R   +T   +KA A L  L  LDL        GL +L  L KL +LN+     ITD+   
Sbjct: 51  RGKTVTDADLKALAPLTGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLGGTK-ITDAGPT 109

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
            L+ L  L  L +S ++VTD+G+  +  L+ L  L+L    VT A L  L+ L  +  L+
Sbjct: 110 ELAPLAVLTDLNLSSTQVTDAGLKEVARLRTLVALDLSHTGVTNAGLGHLT-LTKMRSLS 168

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           L   +++D G  +  +I S+  L+L    +TDE L  L     +  L+L    +   GL 
Sbjct: 169 LRGTKITDGGLREI-RIMSVSGLDLSGTALTDEGLKDLGLFEEITGLDLSDTKVTSNGLK 227

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
            L     LK L LS T+VG +GL+HL+ L  LES+ L+ TG++   +++LA L  L+ L 
Sbjct: 228 ELASQPTLKFLSLSRTKVGDAGLKHLAPLKRLESLYLNGTGVTGTGVKELAPLERLRILE 287

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
           L    +T  GL  L++L  L  L L  A +TD G   + + K L +L++    +T AGV 
Sbjct: 288 LTGTMVTGGGLKHLSTLPRLAILRLSDAAVTDEGLKDIAHLKTLLALDLYRTKVTGAGVA 347

Query: 415 HIK 417
            ++
Sbjct: 348 ELR 350



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/312 (31%), Positives = 157/312 (50%), Gaps = 29/312 (9%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           + L  +DLS + VTD+GL HL   + L +L+     +I+D G   L  L+ LT L+   +
Sbjct: 67  TGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLGGT-KITDAGPTELAPLAVLTDLNL-SS 124

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             +T  G+K  A L  LV LDL      H G+ N  GL  L                   
Sbjct: 125 TQVTDAGLKEVARLRTLVALDLS-----HTGVTN-AGLGHLT------------------ 160

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
             LT ++SL +  +K+TD G+  ++ +  ++ L+L G  +T   L  L     +  L+L+
Sbjct: 161 --LTKMRSLSLRGTKITDGGLREIR-IMSVSGLDLSGTALTDEGLKDLGLFEEITGLDLS 217

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             +++ +G ++ +   +LK L+L   ++ D  L HL  L  LESL L+  G+   G+  L
Sbjct: 218 DTKVTSNGLKELASQPTLKFLSLSRTKVGDAGLKHLAPLKRLESLYLNGTGVTGTGVKEL 277

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
             L  L+ LEL+ T V   GL+HLS L  L  + LS   ++D  L+ +A L +L +L+L 
Sbjct: 278 APLERLRILELTGTMVTGGGLKHLSTLPRLAILRLSDAAVTDEGLKDIAHLKTLLALDLY 337

Query: 357 ARQITDTGLAAL 368
             ++T  G+A L
Sbjct: 338 RTKVTGAGVAEL 349



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 125/238 (52%), Gaps = 3/238 (1%)

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
           G + ++ L    ++D   +  + +  L  L+L    +TD  L HL  LT L +LNL    
Sbjct: 43  GVVTHVMLRGKTVTDADLKALAPLTGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLGGTK 102

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           I D G   L  L  L  L LS TQV  +GL+ ++ L  L +++LS TG+++  L  L  L
Sbjct: 103 ITDAGPTELAPLAVLTDLNLSSTQVTDAGLKEVARLRTLVALDLSHTGVTNAGLGHLT-L 161

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
           + ++SL+L   +ITD GL  +  +  ++ LDL G  +TD G   L  F+ +  L++    
Sbjct: 162 TKMRSLSLRGTKITDGGLREI-RIMSVSGLDLSGTALTDEGLKDLGLFEEITGLDLSDTK 220

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           +T  G+K +    +L  L+LS+   + D  L+ ++ L  L SL ++ + +T  G++ L
Sbjct: 221 VTSNGLKELASQPTLKFLSLSR-TKVGDAGLKHLAPLKRLESLYLNGTGVTGTGVKEL 277



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 1/96 (1%)

Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
           +TH+ L G  +TD+    L     L  L++    +TDAG+KH+  L+ LT LNL     +
Sbjct: 45  VTHVMLRGKTVTDADLKALAPLTGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLG-GTKI 103

Query: 434 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           TD     ++ L  L  LN+S++++T AGL+ +   R
Sbjct: 104 TDAGPTELAPLAVLTDLNLSSTQVTDAGLKEVARLR 139


>gi|59802561|gb|AAX07517.1| putative regulatory subunit [Gemmata sp. Wa1-1]
          Length = 402

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/290 (38%), Positives = 161/290 (55%), Gaps = 2/290 (0%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
           R   +LT L+ R    +T  G+K    L  L  LDL R      GL  L+GL  L +  I
Sbjct: 115 RDFISLTGLNLRFTK-VTDLGLKEMRSLSKLTVLDLGRTKVTDAGLQELRGLTNLTTW-I 172

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
              + +TD+ +K LSGL NL  L +  +KVT  G+  LKGL  LT L+L G   T A L 
Sbjct: 173 SAPHEVTDAGLKELSGLANLTELNLRFTKVTYLGLKELKGLTNLTSLDLFGTSTTDASLA 232

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
            L  L +L  LNL+  +++D G ++ + + +L  L+L F ++TD  L  LKGL+NL  L+
Sbjct: 233 ELKGLTNLTELNLSDTKVTDAGLQELTGLANLASLDLRFTKVTDAGLQKLKGLSNLAVLD 292

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
           L    + D GL  L  L  L  L+L  T+V  +GL+ L+GL NL S++L  T ++D  L+
Sbjct: 293 LFGTSVTDAGLKELGRLSKLTVLDLGSTKVTGTGLKELTGLANLTSLHLRLTAVTDAGLK 352

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
           +L+GL++L SL+L    ++DT L  L  L+ LT L L    +TD G   L
Sbjct: 353 ELSGLANLTSLDLFGTPVSDTDLKELKKLSKLTSLRLGRTAVTDVGIKEL 402



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/238 (40%), Positives = 141/238 (59%), Gaps = 1/238 (0%)

Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
           SL  LNL   +++D G ++   +  L VL+LG  ++TD  L  L+GLTNL +       +
Sbjct: 119 SLTGLNLRFTKVTDLGLKEMRSLSKLTVLDLGRTKVTDAGLQELRGLTNLTTWISAPHEV 178

Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
            D GL  L+GL NL  L L  T+V   GL+ L GLTNL S++L  T  +D SL +L GL+
Sbjct: 179 TDAGLKELSGLANLTELNLRFTKVTYLGLKELKGLTNLTSLDLFGTSTTDASLAELKGLT 238

Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
           +L  LNL   ++TD GL  LT L  L  LDL   ++TD+G   L+   NL  L++ G  +
Sbjct: 239 NLTELNLSDTKVTDAGLQELTGLANLASLDLRFTKVTDAGLQKLKGLSNLAVLDLFGTSV 298

Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
           TDAG+K +  LS LT+L+L  +  +T   L+ ++GL  L SL++  + +T AGL+ L+
Sbjct: 299 TDAGLKELGRLSKLTVLDLG-STKVTGTGLKELTGLANLTSLHLRLTAVTDAGLKELS 355



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 98/257 (38%), Positives = 142/257 (55%), Gaps = 1/257 (0%)

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
            + L  LN+++   +TD  +K +  L+ L  L +  +KVTD+G+  L+GL  LT      
Sbjct: 117 FISLTGLNLRFTK-VTDLGLKEMRSLSKLTVLDLGRTKVTDAGLQELRGLTNLTTWISAP 175

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
             VT A L  LS L +L  LNL   +++  G ++   + +L  L+L     TD  L  LK
Sbjct: 176 HEVTDAGLKELSGLANLTELNLRFTKVTYLGLKELKGLTNLTSLDLFGTSTTDASLAELK 235

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
           GLTNL  LNL    + D GL  LTGL NL  L+L  T+V  +GL+ L GL+NL  ++L  
Sbjct: 236 GLTNLTELNLSDTKVTDAGLQELTGLANLASLDLRFTKVTDAGLQKLKGLSNLAVLDLFG 295

Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
           T ++D  L++L  LS L  L+L + ++T TGL  LT L  LT L L    +TD+G   L 
Sbjct: 296 TSVTDAGLKELGRLSKLTVLDLGSTKVTGTGLKELTGLANLTSLHLRLTAVTDAGLKELS 355

Query: 394 NFKNLRSLEICGGGLTD 410
              NL SL++ G  ++D
Sbjct: 356 GLANLTSLDLFGTPVSD 372



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 103/278 (37%), Positives = 147/278 (52%), Gaps = 25/278 (8%)

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           +L  L +  +KVTD G+  ++ L KLT+L+L    VT A L  L  L +L        ++
Sbjct: 119 SLTGLNLRFTKVTDLGLKEMRSLSKLTVLDLGRTKVTDAGLQELRGLTNLTTWISAPHEV 178

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           +D G ++ S + +L  LNL F ++T   L  LKGLTNL SL+L      D  L  L GL 
Sbjct: 179 TDAGLKELSGLANLTELNLRFTKVTYLGLKELKGLTNLTSLDLFGTSTTDASLAELKGLT 238

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
           NL  L LSDT+V  +GL+ L+GL NL S++L FT ++D  L+KL GLS+L  L+L    +
Sbjct: 239 NLTELNLSDTKVTDAGLQELTGLANLASLDLRFTKVTDAGLQKLKGLSNLAVLDLFGTSV 298

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GL  L  L+ LT LDL   ++T +G   L    NL SL +    +TDAG+K +    
Sbjct: 299 TDAGLKELGRLSKLTVLDLGSTKVTGTGLKELTGLANLTSLHLRLTAVTDAGLKEL---- 354

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
                                SGL  L SL++  + ++
Sbjct: 355 ---------------------SGLANLTSLDLFGTPVS 371



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/288 (35%), Positives = 151/288 (52%), Gaps = 27/288 (9%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           S L  +DL  + VTD+GL  L+  +NL +   +   +++D GL+ L GL+NLT L+ R  
Sbjct: 142 SKLTVLDLGRTKVTDAGLQELRGLTNLTTW-ISAPHEVTDAGLKELSGLANLTELNLRFT 200

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             +T  G+K   GL NL  LDL   +     L  LKGL  L  LN+     +TD+ ++ L
Sbjct: 201 K-VTYLGLKELKGLTNLTSLDLFGTSTTDASLAELKGLTNLTELNLSDTK-VTDAGLQEL 258

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           +GL NL SL +  +KVTD+G+  LKGL  L +L+L G  VT                   
Sbjct: 259 TGLANLASLDLRFTKVTDAGLQKLKGLSNLAVLDLFGTSVT------------------- 299

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
                D G ++  ++  L VL+LG  ++T   L  L GL NL SL+L    + D GL  L
Sbjct: 300 -----DAGLKELGRLSKLTVLDLGSTKVTGTGLKELTGLANLTSLHLRLTAVTDAGLKEL 354

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
           +GL NL  L+L  T V  + L+ L  L+ L S+ L  T ++D  +++L
Sbjct: 355 SGLANLTSLDLFGTPVSDTDLKELKKLSKLTSLRLGRTAVTDVGIKEL 402


>gi|46447142|ref|YP_008507.1| hypothetical protein pc1508 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400783|emb|CAF24232.1| hypothetical protein pc1508 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 657

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 197/367 (53%), Gaps = 35/367 (9%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKW 164
           +++  L+F RN  +T   +       NL  L LE C  +   GL +L  L+ L+ L++  
Sbjct: 309 NDIEELNFSRNAYLTDAHLLVLKNCKNLKALYLEGCKNLTDTGLAHLSPLVALQHLSLFD 368

Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCP-VTAACLD 222
           C  +TD+ +  LS L NL+ L +S SK  T++G+A+L  L  L  LNL GC  +T   L 
Sbjct: 369 CENLTDAGLAYLSPLENLQHLNLSHSKHFTNAGLAHLSPLAALQHLNLFGCENLTGDGLT 428

Query: 223 SLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLES 280
            LS+L +L +L LN C+ L+D G    + + +L+ L+L F + +TD  L HL  L  L+ 
Sbjct: 429 HLSSLVALQHLGLNFCRNLTDAGLAHLAPLVTLQHLDLNFCDNLTDTGLAHLTSLVTLQH 488

Query: 281 LNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISD 338
           LNL  C  + D GLV+L+ L NL+ L+L+D   +  +GL HL+ L  L+ +NL       
Sbjct: 489 LNLGWCRNLTDAGLVHLSPLENLQHLDLNDCYNLTDAGLAHLTPLVALQHLNL------- 541

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKN 397
              R+              R++TD GLA LT L  L +LDLFG R +TD+G  +L     
Sbjct: 542 ---RR-------------CRKLTDAGLAHLTPLVALQYLDLFGCRNLTDAGLTHLTPLIA 585

Query: 398 LRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN- 454
           L+ L +  C   LTD G+ H+  L+ L  L+LS   NLT+  L  +S L  L  L++S  
Sbjct: 586 LQHLYLGLCNN-LTDRGLAHLTPLAVLQRLDLSFCSNLTNAGLRHLSPLVALKYLDLSGC 644

Query: 455 SRITSAG 461
             +T AG
Sbjct: 645 ENLTDAG 651



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 133/380 (35%), Positives = 189/380 (49%), Gaps = 38/380 (10%)

Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER------CTRIHGGLVNLKGL 154
           HL  L N    +        A  +  F  +IN    D+E              L+ LK  
Sbjct: 274 HLNALKNYLEYTVVSTLLNQAPDLTKFEKIINYFANDIEELNFSRNAYLTDAHLLVLKNC 333

Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEG 213
             L++L ++ C  +TD+ +  LS L  L+ L +  C  +TD+G+AYL  L+ L  LNL  
Sbjct: 334 KNLKALYLEGCKNLTDTGLAHLSPLVALQHLSLFDCENLTDAGLAYLSPLENLQHLNLSH 393

Query: 214 CP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLV 270
               T A L  LS L +L +LNL  C+ L+ DG    S + +L+ L L F   +TD  L 
Sbjct: 394 SKHFTNAGLAHLSPLAALQHLNLFGCENLTGDGLTHLSSLVALQHLGLNFCRNLTDAGLA 453

Query: 271 HLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLES 328
           HL  L  L+ L+L+ C  + D GL +LT L  L+ L L   + +  +GL HLS L NL+ 
Sbjct: 454 HLAPLVTLQHLDLNFCDNLTDTGLAHLTSLVTLQHLNLGWCRNLTDAGLVHLSPLENLQH 513

Query: 329 INLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITD 386
           ++L+    ++D  L  L  L +L+ LNL   R++TD GLA LT L  L +LDLFG R   
Sbjct: 514 LDLNDCYNLTDAGLAHLTPLVALQHLNLRRCRKLTDAGLAHLTPLVALQYLDLFGCR--- 570

Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
                                LTDAG+ H+  L +L  L L    NLTD+ L  ++ L  
Sbjct: 571 --------------------NLTDAGLTHLTPLIALQHLYLGLCNNLTDRGLAHLTPLAV 610

Query: 447 LVSLNVSN-SRITSAGLRHL 465
           L  L++S  S +T+AGLRHL
Sbjct: 611 LQRLDLSFCSNLTNAGLRHL 630



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 126/400 (31%), Positives = 201/400 (50%), Gaps = 36/400 (9%)

Query: 24  SLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLS-GSDVTDSGLIHLKDCSN 82
           +L+ + +  +    L Q P +  K+  +I    + +  ++ S  + +TD+ L+ LK+C N
Sbjct: 277 ALKNYLEYTVVSTLLNQAPDLT-KFEKIINYFANDIEELNFSRNAYLTDAHLLVLKNCKN 335

Query: 83  LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
           L++L    C  ++D GL HL  L  L  LS      +T  G+   + L NL  L+L    
Sbjct: 336 LKALYLEGCKNLTDTGLAHLSPLVALQHLSLFDCENLTDAGLAYLSPLENLQHLNLSHSK 395

Query: 143 RI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL 200
              + GL +L  L  L+ LN+  C  +T   +  LS L  L+ L ++ C  +TD+G+A+ 
Sbjct: 396 HFTNAGLAHLSPLAALQHLNLFGCENLTGDGLTHLSSLVALQHLGLNFCRNLTDAGLAH- 454

Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL 259
                                  L+ L +L +L+LN C  L+D G    + + +L+ LNL
Sbjct: 455 -----------------------LAPLVTLQHLDLNFCDNLTDTGLAHLTSLVTLQHLNL 491

Query: 260 GF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSG 316
           G+   +TD  LVHL  L NL+ L+L+ C  + D GL +LT L  L+ L L    ++  +G
Sbjct: 492 GWCRNLTDAGLVHLSPLENLQHLDLNDCYNLTDAGLAHLTPLVALQHLNLRRCRKLTDAG 551

Query: 317 LRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGL 374
           L HL+ L  L+ ++L     ++D  L  L  L +L+ L L     +TD GLA LT L  L
Sbjct: 552 LAHLTPLVALQYLDLFGCRNLTDAGLTHLTPLIALQHLYLGLCNNLTDRGLAHLTPLAVL 611

Query: 375 THLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAG 412
             LDL F + +T++G  +L     L+ L++ G   LTDAG
Sbjct: 612 QRLDLSFCSNLTNAGLRHLSPLVALKYLDLSGCENLTDAG 651


>gi|348688896|gb|EGZ28710.1| hypothetical protein PHYSODRAFT_322345 [Phytophthora sojae]
          Length = 683

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 134/400 (33%), Positives = 211/400 (52%), Gaps = 16/400 (4%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA--ITAQGMKAFAGLINLVKLDL 138
             L  L    C Q+ D G+  L  L +LT+L+    N   +T  G+ A AG+ +L  L+L
Sbjct: 253 PKLNYLSLRGCSQVGDIGIRELARLKHLTTLNLWYANQGNLTDDGISALAGVTSLTSLNL 312

Query: 139 ERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSG 196
             C+++   G+ +L  L+ L  L       +TD+ +K L+ L +L +L I+ C  +TD+G
Sbjct: 313 SNCSQLTDVGISSLGALVNLRHLEFANVGEVTDNGLKALAPLVDLITLDIAGCYNITDAG 372

Query: 197 IAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSL 254
            + L     L+  NL  C  +     + + +L  + +LN  +C +++D G    SK+ +L
Sbjct: 373 TSVLANFPNLSSCNLWYCSEIGDTTFEHMESLTKMRFLNFMKCGKVTDKGLRSISKLRNL 432

Query: 255 KVLNLG--FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-T 310
             L++   FN +TD+ L  L GL  L+SL L  C GI D+G+  L+ L +L  L+LS+  
Sbjct: 433 TSLDMVSCFN-VTDDGLNELVGLHRLKSLYLGGCSGIRDDGIAALSQLKSLVILDLSNCR 491

Query: 311 QVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL 368
           QVG+  L  L  L NL ++NL     I D  +  LAGL  LK+LNL + R +TD     +
Sbjct: 492 QVGNKALLGLGELHNLTNLNLMRCNRIDDEGIAYLAGLKRLKTLNLSNCRLLTDAATTTI 551

Query: 369 TSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLN 426
             +T L  + L+   ++TD+G   L +   L+S+++     LTDA +     +  LT L+
Sbjct: 552 AQMTELESIVLWYCNKLTDTGVMNLASLTKLQSIDLASCSKLTDACLSTFPSIPKLTSLD 611

Query: 427 LSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHL 465
           L   C LTD+ +  +  +T L SLN+S    IT AGL HL
Sbjct: 612 LGNCCLLTDEGMATLGKVTSLTSLNLSECGEITDAGLAHL 651



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 129/371 (34%), Positives = 200/371 (53%), Gaps = 11/371 (2%)

Query: 68  DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           ++TD G+  L   ++L SL+ + C Q++D G+  L  L NL  L F     +T  G+KA 
Sbjct: 292 NLTDDGISALAGVTSLTSLNLSNCSQLTDVGISSLGALVNLRHLEFANVGEVTDNGLKAL 351

Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
           A L++L+ LD+  C  I   G   L     L S N+ +C+ I D+  + +  LT ++ L 
Sbjct: 352 APLVDLITLDIAGCYNITDAGTSVLANFPNLSSCNLWYCSEIGDTTFEHMESLTKMRFLN 411

Query: 187 -ISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDD 243
            + C KVTD G+  +  L+ LT L++  C  VT   L+ L  L  L  L L  C  + DD
Sbjct: 412 FMKCGKVTDKGLRSISKLRNLTSLDMVSCFNVTDDGLNELVGLHRLKSLYLGGCSGIRDD 471

Query: 244 GCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN 301
           G    S++ SL +L+L    ++ ++ L+ L  L NL +LNL  C  I DEG+  L GL  
Sbjct: 472 GIAALSQLKSLVILDLSNCRQVGNKALLGLGELHNLTNLNLMRCNRIDDEGIAYLAGLKR 531

Query: 302 LKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-R 358
           LK L LS+ + +  +    ++ +T LESI L +   ++D  +  LA L+ L+S++L +  
Sbjct: 532 LKTLNLSNCRLLTDAATTTIAQMTELESIVLWYCNKLTDTGVMNLASLTKLQSIDLASCS 591

Query: 359 QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 416
           ++TD  L+   S+  LT LDL     +TD G A L    +L SL +   G +TDAG+ H+
Sbjct: 592 KLTDACLSTFPSIPKLTSLDLGNCCLLTDEGMATLGKVTSLTSLNLSECGEITDAGLAHL 651

Query: 417 KDLSSLTLLNL 427
             L +LT +NL
Sbjct: 652 AALVNLTNINL 662



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 145/274 (52%), Gaps = 7/274 (2%)

Query: 67  SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
           S++ D+   H++  + ++ L+F  C +++D GL  +  L NLTSL       +T  G+  
Sbjct: 391 SEIGDTTFEHMESLTKMRFLNFMKCGKVTDKGLRSISKLRNLTSLDMVSCFNVTDDGLNE 450

Query: 127 FAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
             GL  L  L L  C+ I   G+  L  L  L  L++  C  + +  +  L  L NL +L
Sbjct: 451 LVGLHRLKSLYLGGCSGIRDDGIAALSQLKSLVILDLSNCRQVGNKALLGLGELHNLTNL 510

Query: 186 Q-ISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSD 242
             + C+++ D GIAYL GL++L  LNL  C  +T A   +++ +  L  + L  C +L+D
Sbjct: 511 NLMRCNRIDDEGIAYLAGLKRLKTLNLSNCRLLTDAATTTIAQMTELESIVLWYCNKLTD 570

Query: 243 DGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLC 300
            G    + +  L+ ++L   +++TD CL     +  L SL+L +C  + DEG+  L  + 
Sbjct: 571 TGVMNLASLTKLQSIDLASCSKLTDACLSTFPSIPKLTSLDLGNCCLLTDEGMATLGKVT 630

Query: 301 NLKCLELSDT-QVGSSGLRHLSGLTNLESINLSF 333
           +L  L LS+  ++  +GL HL+ L NL +INL +
Sbjct: 631 SLTSLNLSECGEITDAGLAHLAALVNLTNINLWY 664



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 110/223 (49%), Gaps = 26/223 (11%)

Query: 67  SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
           S + D G+  L    +L  LD + C Q+ +  L  L  L NLT+L+  R N I  +G+  
Sbjct: 466 SGIRDDGIAALSQLKSLVILDLSNCRQVGNKALLGLGELHNLTNLNLMRCNRIDDEGIAY 525

Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
            AGL  L  L+L  C  +       +  + +LES+ + +CN +TD+ +  L+ LT L+S+
Sbjct: 526 LAGLKRLKTLNLSNCRLLTDAATTTIAQMTELESIVLWYCNKLTDTGVMNLASLTKLQSI 585

Query: 186 QI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
            + SCSK+TD+ ++    + KLT L+L  C                       C L+D+G
Sbjct: 586 DLASCSKLTDACLSTFPSIPKLTSLDLGNC-----------------------CLLTDEG 622

Query: 245 CEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSC 286
                K+ SL  LNL    EITD  L HL  L NL ++NL  C
Sbjct: 623 MATLGKVTSLTSLNLSECGEITDAGLAHLAALVNLTNINLWYC 665



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 57  SSLLSVDL-SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
           + L S+DL S S +TD+ L        L SLD   C  ++D G+  L  +++LTSL+   
Sbjct: 580 TKLQSIDLASCSKLTDACLSTFPSIPKLTSLDLGNCCLLTDEGMATLGKVTSLTSLNLSE 639

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI 144
              IT  G+   A L+NL  ++L  CT++
Sbjct: 640 CGEITDAGLAHLAALVNLTNINLWYCTKV 668



 Score = 43.1 bits (100), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 35/178 (19%)

Query: 323 LTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL------------ 368
             NL+ +NL+  + ++D S+ +LA +  ++S+ L    Q+TD G+ AL            
Sbjct: 174 FPNLKEVNLTGCSNLTDESVEQLAQIPRMESIALKGCYQVTDKGIIALTESLSSSLTSLN 233

Query: 369 ----------------TSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEIC---GGGL 408
                            +L  L +L L G +++ D G   L   K+L +L +     G L
Sbjct: 234 LGYCKVVSDEAVSAIAANLPKLNYLSLRGCSQVGDIGIRELARLKHLTTLNLWYANQGNL 293

Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHL 465
           TD G+  +  ++SLT LNLS    LTD  +  +  L  L  L  +N   +T  GL+ L
Sbjct: 294 TDDGISALAGVTSLTSLNLSNCSQLTDVGISSLGALVNLRHLEFANVGEVTDNGLKAL 351


>gi|149175912|ref|ZP_01854530.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
 gi|148845359|gb|EDL59704.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
          Length = 495

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 141/471 (29%), Positives = 244/471 (51%), Gaps = 19/471 (4%)

Query: 3   PRDISQQIFNE----LVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSS 58
           PRD + Q   +    ++++   T+ S     D  +  + L + P V+D  + V  S+ + 
Sbjct: 21  PRDKAIQAIRDAGGKVIFAPG-TDESTGNLGDKTVSMVMLNEIP-VDDSIL-VHVSKLTE 77

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           + S+ + G+++TD GL  L+D   LQSL +    QISD G++ L  +  L  L+      
Sbjct: 78  VTSLWIIGTEITDQGLTLLRDLQGLQSL-YITNNQISDAGIQQLPQVK-LVELTLG-GTK 134

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT + +K F+   +L  L++ +      GL  +    KLE L +     ITD  M+ + G
Sbjct: 135 ITDESLKHFSNSSDLNTLNVGKTAVSDRGLQYVSQFKKLERLYLHETQ-ITDEGMQQIQG 193

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           L NLKSL ++ +++TDSG+  L+ L +L  L L    +T A L  L  L  L  L L+  
Sbjct: 194 LKNLKSLMLNETEITDSGLTALRNLDQLEELFLNETKITGAGLKKLERLTRLSKLILSET 253

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
            ++D   +   ++ +LK L L   ++TD+ L  +    +LE L++ +  I D GL+ L  
Sbjct: 254 DITDADIKYLKELPALKRLYLDQTQLTDDGLSQIVDFPSLEMLDVSNNQITDAGLIYL-- 311

Query: 299 LCNLK---CLELSDTQVGSSGLRHLSGLTNLE-SINLSFTGISDGSLRKLAGLSSLKSLN 354
           L N K    + LS  Q+  +GL  L G +++E +++LS T ++D  L+ L  ++ L  L+
Sbjct: 312 LQNGKQWSSINLSGNQITDAGLSIL-GKSHIELTLDLSNTEVTDAGLKYLTSMNMLFGLS 370

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
           L+  QI+D G+  L  L  L  + L G  ITD     ++   ++  L +    LTDAG  
Sbjct: 371 LNNCQISDQGVQTLMELPALKSIQLNGTDITDCSLEIIKTKSDMLVLYLDDTKLTDAGFS 430

Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
            ++ L+ L +L+L+ N  +TD +L+  + +T L  LN+  + ++ A ++ L
Sbjct: 431 QLQGLTGLQILSLN-NTAVTDASLKFFNKMTKLFELNLKQTAVSDAAVQKL 480



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/352 (28%), Positives = 174/352 (49%), Gaps = 5/352 (1%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S  S L ++++  + V+D GL ++     L+ L +    QI+D G++ ++GL NL SL  
Sbjct: 144 SNSSDLNTLNVGKTAVSDRGLQYVSQFKKLERL-YLHETQITDEGMQQIQGLKNLKSLML 202

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
                IT  G+ A   L  L +L L        GL  L+ L +L  L +   + ITD+D+
Sbjct: 203 NETE-ITDSGLTALRNLDQLEELFLNETKITGAGLKKLERLTRLSKLILSETD-ITDADI 260

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY- 232
           K L  L  LK L +  +++TD G++ +     L +L++    +T A L  L   G  +  
Sbjct: 261 KYLKELPALKRLYLDQTQLTDDGLSQIVDFPSLEMLDVSNNQITDAGLIYLLQNGKQWSS 320

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           +NL+  Q++D G     K      L+L   E+TD  L +L  +  L  L+L++C I D+G
Sbjct: 321 INLSGNQITDAGLSILGKSHIELTLDLSNTEVTDAGLKYLTSMNMLFGLSLNNCQISDQG 380

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
           +  L  L  LK ++L+ T +    L  +   +++  + L  T ++D    +L GL+ L+ 
Sbjct: 381 VQTLMELPALKSIQLNGTDITDCSLEIIKTKSDMLVLYLDDTKLTDAGFSQLQGLTGLQI 440

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
           L+L+   +TD  L     +T L  L+L    ++D+    L    N ++ +IC
Sbjct: 441 LSLNNTAVTDASLKFFNKMTKLFELNLKQTAVSDAAVQKLLKKIN-KTEQIC 491



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 2/161 (1%)

Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
           L++  V  S L H+S LT + S+ +  T I+D  L  L  L  L+SL +   QI+D G+ 
Sbjct: 59  LNEIPVDDSILVHVSKLTEVTSLWIIGTEITDQGLTLLRDLQGLQSLYITNNQISDAGIQ 118

Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
            L  +  L  L L G +ITD    +  N  +L +L +    ++D G++++     L  L 
Sbjct: 119 QLPQVK-LVELTLGGTKITDESLKHFSNSSDLNTLNVGKTAVSDRGLQYVSQFKKLERLY 177

Query: 427 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNH 467
           L +   +TD+ ++ I GL  L SL ++ + IT +GL  L +
Sbjct: 178 LHE-TQITDEGMQQIQGLKNLKSLMLNETEITDSGLTALRN 217


>gi|46447562|ref|YP_008927.1| hypothetical protein pc1928 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401203|emb|CAF24652.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 528

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 119/340 (35%), Positives = 184/340 (54%), Gaps = 33/340 (9%)

Query: 65  SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
             + +TD+    LK+C NL++L F  C  ++D GL HL+ L+ L  L+            
Sbjct: 203 ENTHLTDAHFSVLKECKNLKALHFEACQILTDAGLAHLKPLTALQHLNL----------- 251

Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
              +G  +L  +          GL +L  L  L+ L++  C   TD  +  L+ LT L+ 
Sbjct: 252 ---SGCYHLTDV----------GLAHLTFLTGLQHLDLSQCWHFTDDGLAHLTSLTALQY 298

Query: 185 LQ-ISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LS 241
           L  + C  + D+G+A+LK L  L  LNL GC  +T A L  L+ L  L +LNL++C+ L+
Sbjct: 299 LALMGCKNLIDAGLAHLKPLTSLQHLNLRGCGYLTDAGLAHLAPLTGLQHLNLSKCENLT 358

Query: 242 DDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGL 299
           D G      + +L+ LNL    ++TD+ L HL  +TNL+ L+L  C  + D GL +LT L
Sbjct: 359 DVGLAHLRLLVALQYLNLDNCRKLTDDGLAHLTPVTNLQHLDLSQCWHLTDIGLAHLTPL 418

Query: 300 CNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-D 356
            +L+ L+LS  + +   GL HL+ LT L+ ++LS+   ++D  L  L  L++L+ L+L  
Sbjct: 419 KSLQHLDLSRCENLTDDGLVHLTPLTALQHLDLSYCYNLTDDGLAHLTPLTTLQHLDLMG 478

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNF 395
            + +TD GLA LT L  L +LDL G +  TD G A  +N 
Sbjct: 479 CKNLTDDGLAHLTPLIALQYLDLIGCKNFTDDGLARFKNL 518



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 123/356 (34%), Positives = 173/356 (48%), Gaps = 32/356 (8%)

Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN 166
           +  L+F  N  +T           NL  L  E C  +   GL +LK L  L+ LN+  C 
Sbjct: 196 IKKLNFSENTHLTDAHFSVLKECKNLKALHFEACQILTDAGLAHLKPLTALQHLNLSGCY 255

Query: 167 CITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSL 224
            +TD  +  L+ LT L+ L +S C   TD G+A+L  L  L  L L GC  +  A L  L
Sbjct: 256 HLTDVGLAHLTFLTGLQHLDLSQCWHFTDDGLAHLTSLTALQYLALMGCKNLIDAGLAHL 315

Query: 225 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLN 282
             L SL +LNL  C  L+D G    + +  L+ LNL   E +TD  L HL+ L  L+ LN
Sbjct: 316 KPLTSLQHLNLRGCGYLTDAGLAHLAPLTGLQHLNLSKCENLTDVGLAHLRLLVALQYLN 375

Query: 283 LDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           LD+C  + D+GL +LT + NL+ L+LS    +   GL HL+ L +L+ ++LS        
Sbjct: 376 LDNCRKLTDDGLAHLTPVTNLQHLDLSQCWHLTDIGLAHLTPLKSLQHLDLS-------- 427

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLR 399
                              +TD GL  LT LT L HLDL +   +TD G A+L     L+
Sbjct: 428 ---------------RCENLTDDGLVHLTPLTALQHLDLSYCYNLTDDGLAHLTPLTTLQ 472

Query: 400 SLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
            L++ G   LTD G+ H+  L +L  L+L    N TD  L     L   ++L + N
Sbjct: 473 HLDLMGCKNLTDDGLAHLTPLIALQYLDLIGCKNFTDDGLARFKNLAASLNLTIIN 528



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 118/319 (36%), Positives = 172/319 (53%), Gaps = 32/319 (10%)

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
           +++ LN      +TD+    L    NLK+L   +C  +TD+G+A+LK L  L  LNL GC
Sbjct: 195 EIKKLNFSENTHLTDAHFSVLKECKNLKALHFEACQILTDAGLAHLKPLTALQHLNLSGC 254

Query: 215 -PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 271
             +T   L  L+ L  L +L+L++C   +DDG    + + +L+ L L G   + D  L H
Sbjct: 255 YHLTDVGLAHLTFLTGLQHLDLSQCWHFTDDGLAHLTSLTALQYLALMGCKNLIDAGLAH 314

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
           LK LT+L+ LNL  CG                   L+D     +GL HL+ LT L+ +NL
Sbjct: 315 LKPLTSLQHLNLRGCGY------------------LTD-----AGLAHLAPLTGLQHLNL 351

Query: 332 SF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGA-RITDSG 388
           S    ++D  L  L  L +L+ LNLD  R++TD GLA LT +T L HLDL     +TD G
Sbjct: 352 SKCENLTDVGLAHLRLLVALQYLNLDNCRKLTDDGLAHLTPVTNLQHLDLSQCWHLTDIG 411

Query: 389 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
            A+L   K+L+ L++     LTD G+ H+  L++L  L+LS   NLTD  L  ++ LT L
Sbjct: 412 LAHLTPLKSLQHLDLSRCENLTDDGLVHLTPLTALQHLDLSYCYNLTDDGLAHLTPLTTL 471

Query: 448 VSLNVSNSR-ITSAGLRHL 465
             L++   + +T  GL HL
Sbjct: 472 QHLDLMGCKNLTDDGLAHL 490



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 109/202 (53%), Gaps = 5/202 (2%)

Query: 57  SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
           +SL  ++L G   +TD+GL HL   + LQ L+ + C  ++D GL HLR L  L  L+   
Sbjct: 319 TSLQHLNLRGCGYLTDAGLAHLAPLTGLQHLNLSKCENLTDVGLAHLRLLVALQYLNLDN 378

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMK 174
              +T  G+     + NL  LDL +C  +   GL +L  L  L+ L++  C  +TD  + 
Sbjct: 379 CRKLTDDGLAHLTPVTNLQHLDLSQCWHLTDIGLAHLTPLKSLQHLDLSRCENLTDDGLV 438

Query: 175 PLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFY 232
            L+ LT L+ L +S C  +TD G+A+L  L  L  L+L GC  +T   L  L+ L +L Y
Sbjct: 439 HLTPLTALQHLDLSYCYNLTDDGLAHLTPLTTLQHLDLMGCKNLTDDGLAHLTPLIALQY 498

Query: 233 LNLNRCQ-LSDDGCEKFSKIGS 253
           L+L  C+  +DDG  +F  + +
Sbjct: 499 LDLIGCKNFTDDGLARFKNLAA 520



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/147 (36%), Positives = 73/147 (49%), Gaps = 5/147 (3%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           +TD GL HL   +NLQ LD + C  ++D GL HL  L +L  L   R   +T  G+    
Sbjct: 382 LTDDGLAHLTPVTNLQHLDLSQCWHLTDIGLAHLTPLKSLQHLDLSRCENLTDDGLVHLT 441

Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ- 186
            L  L  LDL  C  +   GL +L  L  L+ L++  C  +TD  +  L+ L  L+ L  
Sbjct: 442 PLTALQHLDLSYCYNLTDDGLAHLTPLTTLQHLDLMGCKNLTDDGLAHLTPLIALQYLDL 501

Query: 187 ISCSKVTDSGIAYLKGLQ---KLTLLN 210
           I C   TD G+A  K L     LT++N
Sbjct: 502 IGCKNFTDDGLARFKNLAASLNLTIIN 528



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 54/111 (48%), Gaps = 4/111 (3%)

Query: 58  SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           SL  +DLS   ++TD GL+HL   + LQ LD ++C  ++D GL HL  L+ L  L     
Sbjct: 420 SLQHLDLSRCENLTDDGLVHLTPLTALQHLDLSYCYNLTDDGLAHLTPLTTLQHLDLMGC 479

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN 166
             +T  G+     LI L  LDL  C      GL   K L    SLN+   N
Sbjct: 480 KNLTDDGLAHLTPLIALQYLDLIGCKNFTDDGLARFKNLAA--SLNLTIIN 528


>gi|290997932|ref|XP_002681535.1| predicted protein [Naegleria gruberi]
 gi|284095159|gb|EFC48791.1| predicted protein [Naegleria gruberi]
          Length = 448

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/417 (26%), Positives = 211/417 (50%), Gaps = 31/417 (7%)

Query: 35  DLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQI 94
           D+C  +      K++    S+   L S+D+ G+++ D G  ++ +   L SL+ +   +I
Sbjct: 32  DICYSRIGAEGAKFI----SEMKQLTSLDIGGNEIGDEGSKYISEMKQLTSLNIDNN-RI 86

Query: 95  SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--------------- 139
            D G + +  +  LTSLS   NN I  +G K+ + +  L  LD+                
Sbjct: 87  GDEGAKSISEMKQLTSLSIN-NNEIGVEGAKSISEMKQLTSLDISGNGIGDKGVKFISEM 145

Query: 140 ---RCTRIHGGLVNLKG------LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
              +   I G  +  +G      + +L SLNI   N I D  +K +S +  L SL I  +
Sbjct: 146 KQLKLLDIGGNEIGDEGSKYISEMKQLTSLNI-GENRIGDEGVKSISEMKQLTSLSIYNN 204

Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
           ++ D G   +  +++LT L++ G  +    + S+S +  L  L+++   + D+G +  S+
Sbjct: 205 RIGDEGAKSISEMKQLTSLDISGNGIGDKGVKSISEMKQLTSLDISGNGIGDEGAKFISE 264

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
           +  LK+L++G NEI DE   ++  +  L SLN+ +  IG EG+ +++ +  L  L + + 
Sbjct: 265 MKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIYNNEIGVEGVKSISEMKQLTSLYIYNN 324

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
           Q+G  G++ +S +  L+S+N+ +  I D  ++ ++ +  L SLN+    I D G+ +++ 
Sbjct: 325 QIGVEGVKSISEMKQLKSLNICYNEIGDKGVKFISEMKQLISLNIGGNGIGDEGVKSISE 384

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
           +  LT L++   RI   G+ ++   K L SL+IC   +   GVK I ++  L  L++
Sbjct: 385 MKQLTSLNISKNRIGAEGSKFISEMKQLTSLDICYNEIGGEGVKSISEMKQLKSLSI 441



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 160/304 (52%), Gaps = 1/304 (0%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N I D   K +S +  L SL I  S++   G  ++  +++LT L++ G  +       +S
Sbjct: 12  NQIGDEGAKSISEMKQLTSLDICYSRIGAEGAKFISEMKQLTSLDIGGNEIGDEGSKYIS 71

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            +  L  LN++  ++ D+G +  S++  L  L++  NEI  E    +  +  L SL++  
Sbjct: 72  EMKQLTSLNIDNNRIGDEGAKSISEMKQLTSLSINNNEIGVEGAKSISEMKQLTSLDISG 131

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
            GIGD+G+  ++ +  LK L++   ++G  G +++S +  L S+N+    I D  ++ ++
Sbjct: 132 NGIGDKGVKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIGENRIGDEGVKSIS 191

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
            +  L SL++   +I D G  +++ +  LT LD+ G  I D G   +   K L SL+I G
Sbjct: 192 EMKQLTSLSIYNNRIGDEGAKSISEMKQLTSLDISGNGIGDKGVKSISEMKQLTSLDISG 251

Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
            G+ D G K I ++  L LL++  N  + D+  + IS +  L SLN+ N+ I   G++ +
Sbjct: 252 NGIGDEGAKFISEMKQLKLLDIGGN-EIGDEGSKYISEMKQLTSLNIYNNEIGVEGVKSI 310

Query: 466 NHAR 469
           +  +
Sbjct: 311 SEMK 314



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 184/378 (48%), Gaps = 28/378 (7%)

Query: 117 NAITAQGMKAFAGLINLVKLDLERC-TRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMK 174
           N I  +G K+ + +  L  LD+  C +RI   G   +  + +L SL+I   N I D   K
Sbjct: 12  NQIGDEGAKSISEMKQLTSLDI--CYSRIGAEGAKFISEMKQLTSLDI-GGNEIGDEGSK 68

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
            +S +  L SL I  +++ D G   +  +++LT L++    +      S+S +  L  L+
Sbjct: 69  YISEMKQLTSLNIDNNRIGDEGAKSISEMKQLTSLSINNNEIGVEGAKSISEMKQLTSLD 128

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           ++   + D G +  S++  LK+L++G NEI DE   ++  +  L SLN+    IGDEG+ 
Sbjct: 129 ISGNGIGDKGVKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIGENRIGDEGVK 188

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
           +++ +  L  L + + ++G  G + +S +  L S+++S  GI D  ++ ++ +  L SL+
Sbjct: 189 SISEMKQLTSLSIYNNRIGDEGAKSISEMKQLTSLDISGNGIGDKGVKSISEMKQLTSLD 248

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
           +    I D G   ++ +  L  LD+ G  I D G+ Y+   K L SL I    +   GVK
Sbjct: 249 ISGNGIGDEGAKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIYNNEIGVEGVK 308

Query: 415 HIKDLSSLTLLNLSQNC-----------------------NLTDKTLELISGLTGLVSLN 451
            I ++  LT L +  N                         + DK ++ IS +  L+SLN
Sbjct: 309 SISEMKQLTSLYIYNNQIGVEGVKSISEMKQLKSLNICYNEIGDKGVKFISEMKQLISLN 368

Query: 452 VSNSRITSAGLRHLNHAR 469
           +  + I   G++ ++  +
Sbjct: 369 IGGNGIGDEGVKSISEMK 386



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 169/318 (53%), Gaps = 4/318 (1%)

Query: 43  GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
           G+ DK +  I S+   L  +D+ G+++ D G  ++ +   L SL+     +I D G++ +
Sbjct: 133 GIGDKGVKFI-SEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIGEN-RIGDEGVKSI 190

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
             +  LTSLS   NN I  +G K+ + +  L  LD+        G+ ++  + +L SL+I
Sbjct: 191 SEMKQLTSLSIY-NNRIGDEGAKSISEMKQLTSLDISGNGIGDKGVKSISEMKQLTSLDI 249

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
              N I D   K +S +  LK L I  +++ D G  Y+  +++LT LN+    +    + 
Sbjct: 250 SG-NGIGDEGAKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIYNNEIGVEGVK 308

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
           S+S +  L  L +   Q+  +G +  S++  LK LN+ +NEI D+ +  +  +  L SLN
Sbjct: 309 SISEMKQLTSLYIYNNQIGVEGVKSISEMKQLKSLNICYNEIGDKGVKFISEMKQLISLN 368

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
           +   GIGDEG+ +++ +  L  L +S  ++G+ G + +S +  L S+++ +  I    ++
Sbjct: 369 IGGNGIGDEGVKSISEMKQLTSLNISKNRIGAEGSKFISEMKQLTSLDICYNEIGGEGVK 428

Query: 343 KLAGLSSLKSLNLDARQI 360
            ++ +  LKSL++  +Q+
Sbjct: 429 SISEMKQLKSLSIHNQQM 446


>gi|46446776|ref|YP_008141.1| hypothetical protein pc1142 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400417|emb|CAF23866.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 590

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 128/349 (36%), Positives = 190/349 (54%), Gaps = 13/349 (3%)

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
           L  + +T++ L+ LKDC N++ L F  C  ++D GL HL  L+ L  L       +T  G
Sbjct: 233 LENTHLTNAHLLALKDCKNVKVLYFKKCRDVTDAGLAHLTPLTALQHLGLSDCENLTDAG 292

Query: 124 MKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
           +     L  L  LDL  C  +   GLV+L  L+ L+ L +  C  +T + +  L+ LT L
Sbjct: 293 LAHLTTLTALQHLDLSGCWNLTDSGLVHLTPLVGLQHLGLSDCENLTVAGLAHLTSLTAL 352

Query: 183 KSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-Q 239
           + L + +C  +TD+G+A+L  L  L  L+L  C  +T A L  L+ L +L +LNL  C +
Sbjct: 353 QHLDLRNCYNLTDAGLAHLTPLTALQHLDLSCCYNLTDAGLAHLTPLTALQHLNLCCCRK 412

Query: 240 LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT 297
           L+D G    + + +L+ L+L +   +TD  L HL  LT L  LNL  C  +   GL +LT
Sbjct: 413 LTDAGLAHLTPLTALQHLDLSYCYNLTDAGLAHLTPLTALLHLNLSECWKLTGAGLAHLT 472

Query: 298 GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL 355
            L  L+ L LS    +  +GL HL+ LT L+ +NLS+    +D  L  L  L++L+SL+L
Sbjct: 473 PLVALQHLNLSKCNNLTDAGLVHLAPLTALQHLNLSWCKKFTDAGLAHLTLLTALQSLDL 532

Query: 356 -DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLE 402
                +TD GL  LT LT L +LDL G + +TD+G   L  FK L +L 
Sbjct: 533 IGCNNLTDAGLVHLTPLTALQYLDLIGCKNLTDAG---LERFKTLAALP 578



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 152/481 (31%), Positives = 235/481 (48%), Gaps = 36/481 (7%)

Query: 3   PRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSV 62
           P  ++Q+ F  L+   CLT    E   +     +    Y G+ +   ++         S 
Sbjct: 107 PLALTQKDFTLLL--NCLTNPKFEISLEEISSSIQFADYYGLTEVVKNLEEQLIDGYKSQ 164

Query: 63  DLSGSDVTDSGLIHLKDCSNLQS----------LDF-------NFCIQISDGG--LEHLR 103
                + T+  L+ LK+  N             L+F       N  IQ+S+    + HL 
Sbjct: 165 RFESFNSTEESLVELKELLNFAHRYQLNILRNYLEFTVVSALLNQTIQLSEFERIINHLS 224

Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNI 162
             + + +L+F  N  +T   + A     N+  L  ++C  +   GL +L  L  L+ L +
Sbjct: 225 --NKIEALNFLENTHLTNAHLLALKDCKNVKVLYFKKCRDVTDAGLAHLTPLTALQHLGL 282

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAAC 220
             C  +TD+ +  L+ LT L+ L +S C  +TDSG+ +L  L  L  L L  C  +T A 
Sbjct: 283 SDCENLTDAGLAHLTTLTALQHLDLSGCWNLTDSGLVHLTPLVGLQHLGLSDCENLTVAG 342

Query: 221 LDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLG--FNEITDECLVHLKGLTN 277
           L  L++L +L +L+L  C  L+D G    + + +L+ L+L   +N +TD  L HL  LT 
Sbjct: 343 LAHLTSLTALQHLDLRNCYNLTDAGLAHLTPLTALQHLDLSCCYN-LTDAGLAHLTPLTA 401

Query: 278 LESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-T 334
           L+ LNL  C  + D GL +LT L  L+ L+LS    +  +GL HL+ LT L  +NLS   
Sbjct: 402 LQHLNLCCCRKLTDAGLAHLTPLTALQHLDLSYCYNLTDAGLAHLTPLTALLHLNLSECW 461

Query: 335 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYL 392
            ++   L  L  L +L+ LNL     +TD GL  L  LT L HL+L +  + TD+G A+L
Sbjct: 462 KLTGAGLAHLTPLVALQHLNLSKCNNLTDAGLVHLAPLTALQHLNLSWCKKFTDAGLAHL 521

Query: 393 RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
                L+SL++ G   LTDAG+ H+  L++L  L+L    NLTD  LE    L  L +L 
Sbjct: 522 TLLTALQSLDLIGCNNLTDAGLVHLTPLTALQYLDLIGCKNLTDAGLERFKTLAALPNLT 581

Query: 452 V 452
           +
Sbjct: 582 I 582



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 113/315 (35%), Positives = 162/315 (51%), Gaps = 32/315 (10%)

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
           K+E+LN      +T++ +  L    N+K L    C  VTD+G+A+L  L  L  L L  C
Sbjct: 226 KIEALNFLENTHLTNAHLLALKDCKNVKVLYFKKCRDVTDAGLAHLTPLTALQHLGLSDC 285

Query: 215 P-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
             +T A L  L+ L +L +L+L+ C                         +TD  LVHL 
Sbjct: 286 ENLTDAGLAHLTTLTALQHLDLSGCW-----------------------NLTDSGLVHLT 322

Query: 274 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 331
            L  L+ L L  C  +   GL +LT L  L+ L+L +   +  +GL HL+ LT L+ ++L
Sbjct: 323 PLVGLQHLGLSDCENLTVAGLAHLTSLTALQHLDLRNCYNLTDAGLAHLTPLTALQHLDL 382

Query: 332 SF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSG 388
           S    ++D  L  L  L++L+ LNL   R++TD GLA LT LT L HLDL +   +TD+G
Sbjct: 383 SCCYNLTDAGLAHLTPLTALQHLNLCCCRKLTDAGLAHLTPLTALQHLDLSYCYNLTDAG 442

Query: 389 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
            A+L     L  L +     LT AG+ H+  L +L  LNLS+  NLTD  L  ++ LT L
Sbjct: 443 LAHLTPLTALLHLNLSECWKLTGAGLAHLTPLVALQHLNLSKCNNLTDAGLVHLAPLTAL 502

Query: 448 VSLNVSN-SRITSAG 461
             LN+S   + T AG
Sbjct: 503 QHLNLSWCKKFTDAG 517



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/215 (41%), Positives = 122/215 (56%), Gaps = 17/215 (7%)

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHL 320
           ++TD  L HL  LT L+ L L  C  + D GL +LT L  L+ L+LS    +  SGL HL
Sbjct: 262 DVTDAGLAHLTPLTALQHLGLSDCENLTDAGLAHLTTLTALQHLDLSGCWNLTDSGLVHL 321

Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSL----NLDARQ---ITDTGLAALTSLTG 373
           + L  L+ +     G+SD     +AGL+ L SL    +LD R    +TD GLA LT LT 
Sbjct: 322 TPLVGLQHL-----GLSDCENLTVAGLAHLTSLTALQHLDLRNCYNLTDAGLAHLTPLTA 376

Query: 374 LTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNC 431
           L HLDL     +TD+G A+L     L+ L +C    LTDAG+ H+  L++L  L+LS   
Sbjct: 377 LQHLDLSCCYNLTDAGLAHLTPLTALQHLNLCCCRKLTDAGLAHLTPLTALQHLDLSYCY 436

Query: 432 NLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHL 465
           NLTD  L  ++ LT L+ LN+S   ++T AGL HL
Sbjct: 437 NLTDAGLAHLTPLTALLHLNLSECWKLTGAGLAHL 471



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 1/98 (1%)

Query: 67  SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
           +++TD+GL+HL   + LQ L+ ++C + +D GL HL  L+ L SL     N +T  G+  
Sbjct: 486 NNLTDAGLVHLAPLTALQHLNLSWCKKFTDAGLAHLTLLTALQSLDLIGCNNLTDAGLVH 545

Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIK 163
              L  L  LDL  C  +   GL   K L  L +L IK
Sbjct: 546 LTPLTALQYLDLIGCKNLTDAGLERFKTLAALPNLTIK 583


>gi|306012373|gb|ADM75240.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012405|gb|ADM75256.1| leucine rich repeat-like protein, partial [Picea sitchensis]
          Length = 137

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/99 (72%), Positives = 86/99 (86%)

Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
           ALTSLTGLTHLDLFGARITD G + LR FK L+SLE+CGG +TDAGVK+IKDL+S+  LN
Sbjct: 1   ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60

Query: 427 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           LSQN +LTD  LE ISG+T LVSLN+SN+R+T+AGL+HL
Sbjct: 61  LSQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHL 99



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 3/135 (2%)

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           L+ LT L  L +  +++TD G + L+  +KL  L L G  +T A + ++  L S+  LNL
Sbjct: 2   LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61

Query: 236 NR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           ++   L+D   E  S + +L  LN+    +T+  L HL+ L NL SL+L +C +    + 
Sbjct: 62  SQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEIR 121

Query: 295 NL--TGLCNLKCLEL 307
            L  T L NL  + L
Sbjct: 122 KLQATALPNLAGVRL 136



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 7/138 (5%)

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
            L +LTGL +L       T  G+S LR+      L+S+ L    I+D  ++ +  L+S+ 
Sbjct: 1   ALTSLTGLTHLDLFGARITDYGTSCLRYFK---KLQSLELCGGSITDAGVKNIKDLTSMM 57

Query: 352 SLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
           SLNL     +TD  L  ++ +T L  L++   R+T++G  +LR  KNL SL +    +T 
Sbjct: 58  SLNLSQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT- 116

Query: 411 AGVKHIKDLSSLTLLNLS 428
                I+ L +  L NL+
Sbjct: 117 --WPEIRKLQATALPNLA 132



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 4/129 (3%)

Query: 98  GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
            L  L GL++L     R    IT  G         L  L+L   +    G+ N+K L  +
Sbjct: 1   ALTSLTGLTHLDLFGAR----ITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSM 56

Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
            SLN+   + +TD  ++ +SG+T L SL IS ++VT++G+ +L+ L+ LT L+L+ C VT
Sbjct: 57  MSLNLSQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116

Query: 218 AACLDSLSA 226
              +  L A
Sbjct: 117 WPEIRKLQA 125



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 76/137 (55%), Gaps = 3/137 (2%)

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
           +L++L  L +L+L   +++D G         L+ L L    ITD  + ++K LT++ SLN
Sbjct: 1   ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60

Query: 283 L-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
           L  +  + D  L  ++G+  L  L +S+T+V ++GL+HL  L NL S++L    ++   +
Sbjct: 61  LSQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEI 120

Query: 342 RKL--AGLSSLKSLNLD 356
           RKL    L +L  + LD
Sbjct: 121 RKLQATALPNLAGVRLD 137



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 1/115 (0%)

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
           L  LT L  L+L    I D G   L     L+ LEL    +  +G++++  LT++ S+NL
Sbjct: 2   LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61

Query: 332 SF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           S  + ++DG+L  ++G+++L SLN+   ++T+ GL  L  L  LT L L   ++T
Sbjct: 62  SQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 77/134 (57%), Gaps = 6/134 (4%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
           + L  +DL G+ +TD G   L+    LQSL+   C   I+D G+++++ L+++ SL+  +
Sbjct: 6   TGLTHLDLFGARITDYGTSCLRYFKKLQSLE--LCGGSITDAGVKNIKDLTSMMSLNLSQ 63

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
           N+ +T   ++  +G+  LV L++      + GL +L+ L  L SL+++ C  +T  +++ 
Sbjct: 64  NSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACK-VTWPEIRK 122

Query: 176 L--SGLTNLKSLQI 187
           L  + L NL  +++
Sbjct: 123 LQATALPNLAGVRL 136



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN-CITDSDMKPLSGLTNLKS 184
           A   L  L  LDL        G   L+   KL+SL +  C   ITD+ +K +  LT++ S
Sbjct: 1   ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLEL--CGGSITDAGVKNIKDLTSMMS 58

Query: 185 LQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
           L +S  S +TD  + ++ G+  L  LN+    VT A L  L  L +L  L+L  C+++  
Sbjct: 59  LNLSQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWP 118

Query: 244 GCEKF 248
              K 
Sbjct: 119 EIRKL 123


>gi|224007994|ref|XP_002292956.1| hypothetical protein THAPSDRAFT_16210 [Thalassiosira pseudonana
           CCMP1335]
 gi|220971082|gb|EED89417.1| hypothetical protein THAPSDRAFT_16210 [Thalassiosira pseudonana
           CCMP1335]
          Length = 301

 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/220 (37%), Positives = 131/220 (59%), Gaps = 4/220 (1%)

Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG---LCNLKCLE 306
           KI +LK L L ++ + D  L H + L  LE LNLDSC +GD  + +L     + N+  L+
Sbjct: 69  KINNLKSLELCYSGVQDNHLAHFRSLPMLEELNLDSCHLGDWSIAHLADNNVIPNITSLD 128

Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
           L+D  +   GL  ++    ++ ++L +  ++   LR L+ ++ L+ LNLD+R+I D GL 
Sbjct: 129 LADADISDFGLSKIAQFKQMKRLSLFYCNVTSAGLRHLSSMTKLEVLNLDSREIGDEGLK 188

Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
            L  L  L  LD+F  R+TD G   +R  K L+SLE+CGGG+ D G  H+  + +LT LN
Sbjct: 189 HLRDLP-LQSLDVFSGRVTDLGYGCIRLIKTLQSLELCGGGVGDIGCTHLATIPNLTSLN 247

Query: 427 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
           LSQN  +T++    ++ L+ L +LN+SN+ +T   LR+ +
Sbjct: 248 LSQNERITNRGAASLAALSNLKALNLSNTAVTPDALRYFS 287



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 139/301 (46%), Gaps = 50/301 (16%)

Query: 133 LVKLDLERCTRI-HGGLVNLKGL-MKLESLNIKWCNCITDSDMKPLS------------- 177
           L  L L  C R+    +VN+  L   L ++N+  C C+TD  ++ L              
Sbjct: 1   LRTLSLANCRRLTDEAVVNVSHLSTSLVAVNLGGCRCLTDRSLEALGGLLGLTKLDLSQV 60

Query: 178 --------GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV---TAACLDSLSA 226
                    + NLKSL++  S V D+ +A+ + L  L  LNL+ C +   + A L   + 
Sbjct: 61  CLRSSWQGKINNLKSLELCYSGVQDNHLAHFRSLPMLEELNLDSCHLGDWSIAHLADNNV 120

Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
           + ++  L+L    +SD G  K ++   +K L+L +  +T   L HL  +T LE LNLDS 
Sbjct: 121 IPNITSLDLADADISDFGLSKIAQFKQMKRLSLFYCNVTSAGLRHLSSMTKLEVLNLDSR 180

Query: 287 GIGDEGLVNLTGLC-----------------------NLKCLELSDTQVGSSGLRHLSGL 323
            IGDEGL +L  L                         L+ LEL    VG  G  HL+ +
Sbjct: 181 EIGDEGLKHLRDLPLQSLDVFSGRVTDLGYGCIRLIKTLQSLELCGGGVGDIGCTHLATI 240

Query: 324 TNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
            NL S+NLS    I++     LA LS+LK+LNL    +T   L   + L+ L  L L+G 
Sbjct: 241 PNLTSLNLSQNERITNRGAASLAALSNLKALNLSNTAVTPDALRYFSDLSKLKSLALYGC 300

Query: 383 R 383
           R
Sbjct: 301 R 301



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 23/176 (13%)

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF------- 113
           S+DL+ +D++D GL  +     ++ L   +C  ++  GL HL  ++ L  L+        
Sbjct: 126 SLDLADADISDFGLSKIAQFKQMKRLSLFYC-NVTSAGLRHLSSMTKLEVLNLDSREIGD 184

Query: 114 ---RRNNAITAQGMKAFAG--------LINLVKL--DLERCTRIHG--GLVNLKGLMKLE 158
              +    +  Q +  F+G         I L+K    LE C    G  G  +L  +  L 
Sbjct: 185 EGLKHLRDLPLQSLDVFSGRVTDLGYGCIRLIKTLQSLELCGGGVGDIGCTHLATIPNLT 244

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
           SLN+     IT+     L+ L+NLK+L +S + VT   + Y   L KL  L L GC
Sbjct: 245 SLNLSQNERITNRGAASLAALSNLKALNLSNTAVTPDALRYFSDLSKLKSLALYGC 300


>gi|46447552|ref|YP_008917.1| hypothetical protein pc1918 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401193|emb|CAF24642.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 552

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 177/340 (52%), Gaps = 13/340 (3%)

Query: 67  SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
           + +TD+ L+ LK+C NL+ L    C  I+D GL HL  L+ L  L+      +T  G+  
Sbjct: 204 AHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGCYKLTDAGLVH 263

Query: 127 FAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
              L  L  LDL  C  +   GLV+LK L  L++L +  C  +TD  +  L  LT L++L
Sbjct: 264 LKSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLALTSCKNLTDRGLSHLKSLTALQTL 323

Query: 186 QIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSD 242
            +S C    D+G+A+L  L  L  L+L  C  +T   L  L +L +L  LNL+ C +L D
Sbjct: 324 DLSYCKNFKDAGLAHLPPLTALQTLDLSYCKDLTDRGLSHLKSLTALQTLNLSYCKKLKD 383

Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC 300
            G      + +L+ L L     +TD  L HLK L  L+ L L  C  + D GL +L  L 
Sbjct: 384 AGLAHLKPLTALQYLALNSCKNLTDRGLSHLKSLMALQHLVLSGCDNLTDAGLAHLKPLT 443

Query: 301 NLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-A 357
            L+ L L   Q +   GL HL+ LT L++++LS+   + D  L  L  L++L++L L   
Sbjct: 444 ALQTLGLRRCQNLTGDGLAHLAPLTALQTLDLSYCKKLKDAGLAHLKPLTALQTLGLKWC 503

Query: 358 RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFK 396
             +TD GLA L  L  L HLDL +   +T +G   L NFK
Sbjct: 504 SNLTDAGLAHLKPLAALQHLDLSYCNNLTRAG---LANFK 540



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 123/351 (35%), Positives = 191/351 (54%), Gaps = 21/351 (5%)

Query: 83  LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
           +++L+F+    ++D  L  L+   NL  L      AIT  G+   A L  L  L+L  C 
Sbjct: 195 IEALNFSNNAHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGCY 254

Query: 143 RI-HGGLVNLKGLMKLESLNIKWCNCITDS---DMKPLSGLTNLKSLQISCSKVTDSGIA 198
           ++   GLV+LK L  L++L++ +C  + D+    +KPL+ L NL     SC  +TD G++
Sbjct: 255 KLTDAGLVHLKSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLA--LTSCKNLTDRGLS 312

Query: 199 YLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKV 256
           +LK L  L  L+L  C     A L  L  L +L  L+L+ C+ L+D G      + +L+ 
Sbjct: 313 HLKSLTALQTLDLSYCKNFKDAGLAHLPPLTALQTLDLSYCKDLTDRGLSHLKSLTALQT 372

Query: 257 LNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVG 313
           LNL +  ++ D  L HLK LT L+ L L+SC  + D GL +L  L  L+ L LS    + 
Sbjct: 373 LNLSYCKKLKDAGLAHLKPLTALQYLALNSCKNLTDRGLSHLKSLMALQHLVLSGCDNLT 432

Query: 314 SSGLRHLSGLTNLESINL----SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL 368
            +GL HL  LT L+++ L    + TG  DG L  LA L++L++L+L   +++ D GLA L
Sbjct: 433 DAGLAHLKPLTALQTLGLRRCQNLTG--DG-LAHLAPLTALQTLDLSYCKKLKDAGLAHL 489

Query: 369 TSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIK 417
             LT L  L L + + +TD+G A+L+    L+ L++     LT AG+ + K
Sbjct: 490 KPLTALQTLGLKWCSNLTDAGLAHLKPLAALQHLDLSYCNNLTRAGLANFK 540



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 110/319 (34%), Positives = 172/319 (53%), Gaps = 32/319 (10%)

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
           ++E+LN      +TD+ +  L    NLK L + +C  +TD G+A+L  L  L  LNL GC
Sbjct: 194 EIEALNFSNNAHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGC 253

Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK 273
                                   +L+D G      + +L+ L+L +   + D  LVHLK
Sbjct: 254 -----------------------YKLTDAGLVHLKSLTALQTLDLSYCKNLKDAGLVHLK 290

Query: 274 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINL 331
            LT L++L L SC  + D GL +L  L  L+ L+LS  +    +GL HL  LT L++++L
Sbjct: 291 PLTALQNLALTSCKNLTDRGLSHLKSLTALQTLDLSYCKNFKDAGLAHLPPLTALQTLDL 350

Query: 332 SF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDSG 388
           S+   ++D  L  L  L++L++LNL   +++ D GLA L  LT L +L L   + +TD G
Sbjct: 351 SYCKDLTDRGLSHLKSLTALQTLNLSYCKKLKDAGLAHLKPLTALQYLALNSCKNLTDRG 410

Query: 389 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
            ++L++   L+ L + G   LTDAG+ H+K L++L  L L +  NLT   L  ++ LT L
Sbjct: 411 LSHLKSLMALQHLVLSGCDNLTDAGLAHLKPLTALQTLGLRRCQNLTGDGLAHLAPLTAL 470

Query: 448 VSLNVSN-SRITSAGLRHL 465
            +L++S   ++  AGL HL
Sbjct: 471 QTLDLSYCKKLKDAGLAHL 489



 Score = 46.2 bits (108), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 57  SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
           ++L ++DLS    + D+GL HLK  + LQ+L   +C  ++D GL HL+ L+ L  L    
Sbjct: 468 TALQTLDLSYCKKLKDAGLAHLKPLTALQTLGLKWCSNLTDAGLAHLKPLAALQHLDLSY 527

Query: 116 NNAITAQGMKAFAGLINLVKLDLER 140
            N +T  G+  F  L   + L++ R
Sbjct: 528 CNNLTRAGLANFKILGASLNLEIVR 552


>gi|306012335|gb|ADM75221.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012337|gb|ADM75222.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012341|gb|ADM75224.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012343|gb|ADM75225.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012345|gb|ADM75226.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012347|gb|ADM75227.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012349|gb|ADM75228.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012353|gb|ADM75230.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012355|gb|ADM75231.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012357|gb|ADM75232.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012361|gb|ADM75234.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012363|gb|ADM75235.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012365|gb|ADM75236.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012367|gb|ADM75237.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012369|gb|ADM75238.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012375|gb|ADM75241.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012377|gb|ADM75242.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012379|gb|ADM75243.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012383|gb|ADM75245.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012385|gb|ADM75246.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012387|gb|ADM75247.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012389|gb|ADM75248.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012393|gb|ADM75250.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012399|gb|ADM75253.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012407|gb|ADM75257.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012409|gb|ADM75258.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012411|gb|ADM75259.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012413|gb|ADM75260.1| leucine rich repeat-like protein, partial [Picea sitchensis]
          Length = 137

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 71/99 (71%), Positives = 86/99 (86%)

Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
           ALTSLTGLTHLDLFGARITD G + LR FK L+SLE+CGG +TDAGVK+IKDL+S+  LN
Sbjct: 1   ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60

Query: 427 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           LSQN +LTD  LE ISG+T L+SLN+SN+R+T+AGL+HL
Sbjct: 61  LSQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHL 99



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 3/135 (2%)

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           L+ LT L  L +  +++TD G + L+  +KL  L L G  +T A + ++  L S+  LNL
Sbjct: 2   LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61

Query: 236 NR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           ++   L+D   E  S + +L  LN+    +T+  L HL+ L NL SL+L +C +    + 
Sbjct: 62  SQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEIR 121

Query: 295 NL--TGLCNLKCLEL 307
            L  T L NL  + L
Sbjct: 122 KLQATALPNLAGVRL 136



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 7/138 (5%)

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
            L +LTGL +L       T  G+S LR+      L+S+ L    I+D  ++ +  L+S+ 
Sbjct: 1   ALTSLTGLTHLDLFGARITDYGTSCLRYFK---KLQSLELCGGSITDAGVKNIKDLTSMM 57

Query: 352 SLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
           SLNL     +TD  L  ++ +T L  L++   R+T++G  +LR  KNL SL +    +T 
Sbjct: 58  SLNLSQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT- 116

Query: 411 AGVKHIKDLSSLTLLNLS 428
                I+ L +  L NL+
Sbjct: 117 --WPEIRKLQATALPNLA 132



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 4/129 (3%)

Query: 98  GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
            L  L GL++L     R    IT  G         L  L+L   +    G+ N+K L  +
Sbjct: 1   ALTSLTGLTHLDLFGAR----ITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSM 56

Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
            SLN+   + +TD  ++ +SG+T L SL IS ++VT++G+ +L+ L+ LT L+L+ C VT
Sbjct: 57  MSLNLSQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116

Query: 218 AACLDSLSA 226
              +  L A
Sbjct: 117 WPEIRKLQA 125



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 76/137 (55%), Gaps = 3/137 (2%)

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
           +L++L  L +L+L   +++D G         L+ L L    ITD  + ++K LT++ SLN
Sbjct: 1   ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60

Query: 283 L-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
           L  +  + D  L  ++G+  L  L +S+T+V ++GL+HL  L NL S++L    ++   +
Sbjct: 61  LSQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEI 120

Query: 342 RKL--AGLSSLKSLNLD 356
           RKL    L +L  + LD
Sbjct: 121 RKLQATALPNLAGVRLD 137



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 1/115 (0%)

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
           L  LT L  L+L    I D G   L     L+ LEL    +  +G++++  LT++ S+NL
Sbjct: 2   LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61

Query: 332 SF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           S  + ++DG+L  ++G+++L SLN+   ++T+ GL  L  L  LT L L   ++T
Sbjct: 62  SQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 77/134 (57%), Gaps = 6/134 (4%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
           + L  +DL G+ +TD G   L+    LQSL+   C   I+D G+++++ L+++ SL+  +
Sbjct: 6   TGLTHLDLFGARITDYGTSCLRYFKKLQSLE--LCGGSITDAGVKNIKDLTSMMSLNLSQ 63

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
           N+ +T   ++  +G+  L+ L++      + GL +L+ L  L SL+++ C  +T  +++ 
Sbjct: 64  NSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACK-VTWPEIRK 122

Query: 176 L--SGLTNLKSLQI 187
           L  + L NL  +++
Sbjct: 123 LQATALPNLAGVRL 136



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN-CITDSDMKPLSGLTNLKS 184
           A   L  L  LDL        G   L+   KL+SL +  C   ITD+ +K +  LT++ S
Sbjct: 1   ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLEL--CGGSITDAGVKNIKDLTSMMS 58

Query: 185 LQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
           L +S  S +TD  + ++ G+  L  LN+    VT A L  L  L +L  L+L  C+++  
Sbjct: 59  LNLSQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWP 118

Query: 244 GCEKF 248
              K 
Sbjct: 119 EIRKL 123


>gi|108763744|ref|YP_632240.1| leucine-rich repeat-containing protein [Myxococcus xanthus DK 1622]
 gi|108467624|gb|ABF92809.1| leucine-rich repeat domain protein [Myxococcus xanthus DK 1622]
          Length = 624

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 143/463 (30%), Positives = 215/463 (46%), Gaps = 45/463 (9%)

Query: 16  YSRCLTEVSLEA--------FRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS 67
           Y+  L  V  EA         R+  + +L  G   GV    + V   Q S ++++ +SG+
Sbjct: 90  YAEPLRPVRTEAEAREIAAVLREHHVPELSFGAV-GVPAPELLVALLQESGVVALQVSGT 148

Query: 68  DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           D  ++ L  L++ + L++L  N   ++++ GL  L+ +  L  L              + 
Sbjct: 149 DFGNAHLASLENATQLEALHLN-ATRVTNVGLAPLKRMRRLAVLRLDETPV-------SD 200

Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
           AGL +L +    R   + G  V+ +GL  L                +P      L+ L +
Sbjct: 201 AGLASLSEHTTLRRVTLAGTAVSPQGLGFLAR--------------QP-----GLEELDL 241

Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
           S + V D+ +A L G   L  LNL G  VT A L  LSA+ SL  L L R   SD     
Sbjct: 242 SDTAVDDTVLAVLPG-APLHTLNLSGTKVTNAGLRGLSAMPSLRRLGLARTAASDASLLH 300

Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
            + +  L+ L+LG  ++TD  L+HL  L  L +L L    I   GL +L GL  L+ L L
Sbjct: 301 ITGLRELEALHLGSTQVTDAGLLHLAKLPALRALVLSKARIRGAGLRHLAGLSRLEALHL 360

Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
            DT VG S LRHL GL  L  ++LS T I+   L++L+ L +L+SL L    +TD  L A
Sbjct: 361 DDTLVGDSALRHLRGLNELRELDLSRTAITGTGLQELSTLVALESLWLSGLALTDDSLTA 420

Query: 368 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD----LSSLT 423
           L  L+ LT L L    I      +L +   LR L++   G TD  V  I+     L SL 
Sbjct: 421 LAPLSQLTRLALSHTPIGPEALNHLGSRPLLRHLDLSKTGFTDEWVPSIRQAFPGLHSLK 480

Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
               ++   LTD  L   +  T L +++V+ + I  +GL  L+
Sbjct: 481 ----AERTLLTDAGLGQFAEWTELEAIHVAGTLINGSGLTRLH 519



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 111/407 (27%), Positives = 198/407 (48%), Gaps = 8/407 (1%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+ ++L  V L+G+ V+  GL  L     L+ LD +    + D  L  L G + L +L+ 
Sbjct: 207 SEHTTLRRVTLAGTAVSPQGLGFLARQPGLEELDLSDT-AVDDTVLAVLPG-APLHTLNL 264

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
                +T  G++  + + +L +L L R       L+++ GL +LE+L++     +TD+ +
Sbjct: 265 S-GTKVTNAGLRGLSAMPSLRRLGLARTAASDASLLHITGLRELEALHLG-STQVTDAGL 322

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
             L+ L  L++L +S +++  +G+ +L GL +L  L+L+   V  + L  L  L  L  L
Sbjct: 323 LHLAKLPALRALVLSKARIRGAGLRHLAGLSRLEALHLDDTLVGDSALRHLRGLNELREL 382

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +L+R  ++  G ++ S + +L+ L L    +TD+ L  L  L+ L  L L    IG E L
Sbjct: 383 DLSRTAITGTGLQELSTLVALESLWLSGLALTDDSLTALAPLSQLTRLALSHTPIGPEAL 442

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
            +L     L+ L+LS T      +  +      L S+    T ++D  L + A  + L++
Sbjct: 443 NHLGSRPLLRHLDLSKTGFTDEWVPSIRQAFPGLHSLKAERTLLTDAGLGQFAEWTELEA 502

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
           +++    I  +GL  L +L  LT LDL   R+   G   L+ F  L  L + G    D  
Sbjct: 503 IHVAGTLINGSGLTRLHTLARLTTLDLGATRLDSEGQKALQGFTKLVWLSVAGVRTGDEM 562

Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
           + H+    SL  L L++   +TD  L  +  L  L  L++  + +++
Sbjct: 563 LGHLP--RSLRTLYLTR-TKVTDAGLPALHKLPHLRELDLRGTAVST 606



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 118/406 (29%), Positives = 185/406 (45%), Gaps = 29/406 (7%)

Query: 6   ISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDV----IASQG----- 56
           +S Q    L     L E+ L    D A+ D  L   PG     +++    + + G     
Sbjct: 222 VSPQGLGFLARQPGLEELDLS---DTAVDDTVLAVLPGAPLHTLNLSGTKVTNAGLRGLS 278

Query: 57  --SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
              SL  + L+ +  +D+ L+H+     L++L      Q++D GL HL  L  L +L   
Sbjct: 279 AMPSLRRLGLARTAASDASLLHITGLRELEALHLG-STQVTDAGLLHLAKLPALRALVLS 337

Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
           +   I   G++  AGL  L  L L+        L +L+GL +L  L++     IT + ++
Sbjct: 338 KAR-IRGAGLRHLAGLSRLEALHLDDTLVGDSALRHLRGLNELRELDLS-RTAITGTGLQ 395

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
            LS L  L+SL +S   +TD  +  L  L +LT L L   P+    L+ L +   L +L+
Sbjct: 396 ELSTLVALESLWLSGLALTDDSLTALAPLSQLTRLALSHTPIGPEALNHLGSRPLLRHLD 455

Query: 235 LNRCQLSDDGC----EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
           L++   +D+      + F  + SLK        +TD  L      T LE++++    I  
Sbjct: 456 LSKTGFTDEWVPSIRQAFPGLHSLKAER---TLLTDAGLGQFAEWTELEAIHVAGTLING 512

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS-S 349
            GL  L  L  L  L+L  T++ S G + L G T L  + LS  G+  G    L  L  S
Sbjct: 513 SGLTRLHTLARLTTLDLGATRLDSEGQKALQGFTKL--VWLSVAGVRTGD-EMLGHLPRS 569

Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI-TDSGAAYLRN 394
           L++L L   ++TD GL AL  L  L  LDL G  + T++ +A  R 
Sbjct: 570 LRTLYLTRTKVTDAGLPALHKLPHLRELDLRGTAVSTEARSALARE 615


>gi|306012339|gb|ADM75223.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012351|gb|ADM75229.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012359|gb|ADM75233.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012371|gb|ADM75239.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012381|gb|ADM75244.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012391|gb|ADM75249.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012395|gb|ADM75251.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012397|gb|ADM75252.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012401|gb|ADM75254.1| leucine rich repeat-like protein, partial [Picea sitchensis]
 gi|306012403|gb|ADM75255.1| leucine rich repeat-like protein, partial [Picea sitchensis]
          Length = 137

 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 72/99 (72%), Positives = 86/99 (86%)

Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
           ALTSLTGLTHLDLFGARITD G + LR FK L+SLE+CGG +TDAGVK+IKDL+S+  LN
Sbjct: 1   ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60

Query: 427 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           LSQN +LTD  LE ISG+T LVSLN+SN+R+T+AGL+HL
Sbjct: 61  LSQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHL 99



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 3/135 (2%)

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           L+ LT L  L +  +++TD G + L+  +KL  L L G  +T A + ++  L S+  LNL
Sbjct: 2   LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61

Query: 236 NR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           ++   L+D   E  S + +L  LN+    +T+  L HL+ L NL SL+L +C +    + 
Sbjct: 62  SQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEIR 121

Query: 295 NL--TGLCNLKCLEL 307
            L  T L NL  + L
Sbjct: 122 KLQATALPNLAGVRL 136



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 7/138 (5%)

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
            L +LTGL +L       T  G+S LR+      L+S+ L    I+D  ++ +  L+S+ 
Sbjct: 1   ALTSLTGLTHLDLFGARITDYGTSCLRYFK---KLQSLELCGGSITDAGVKNIKDLTSMM 57

Query: 352 SLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
           SLNL     +TD  L +++ +T L  L++   R+T++G  +LR  KNL SL +    +T 
Sbjct: 58  SLNLSQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT- 116

Query: 411 AGVKHIKDLSSLTLLNLS 428
                I+ L +  L NL+
Sbjct: 117 --WPEIRKLQATALPNLA 132



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 77/137 (56%), Gaps = 3/137 (2%)

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
           +L++L  L +L+L   +++D G         L+ L L    ITD  + ++K LT++ SLN
Sbjct: 1   ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60

Query: 283 L-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
           L  +  + D  L +++G+  L  L +S+T+V ++GL+HL  L NL S++L    ++   +
Sbjct: 61  LSQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEI 120

Query: 342 RKL--AGLSSLKSLNLD 356
           RKL    L +L  + LD
Sbjct: 121 RKLQATALPNLAGVRLD 137



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 4/129 (3%)

Query: 98  GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
            L  L GL++L     R    IT  G         L  L+L   +    G+ N+K L  +
Sbjct: 1   ALTSLTGLTHLDLFGAR----ITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSM 56

Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
            SLN+   + +TD  ++ +SG+T L SL IS ++VT++G+ +L+ L+ LT L+L+ C VT
Sbjct: 57  MSLNLSQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116

Query: 218 AACLDSLSA 226
              +  L A
Sbjct: 117 WPEIRKLQA 125



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 1/115 (0%)

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
           L  LT L  L+L    I D G   L     L+ LEL    +  +G++++  LT++ S+NL
Sbjct: 2   LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61

Query: 332 SF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           S  + ++DG+L  ++G+++L SLN+   ++T+ GL  L  L  LT L L   ++T
Sbjct: 62  SQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 77/132 (58%), Gaps = 6/132 (4%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRRNN 117
           L  +DL G+ +TD G   L+    LQSL+   C   I+D G+++++ L+++ SL+  +N+
Sbjct: 8   LTHLDLFGARITDYGTSCLRYFKKLQSLE--LCGGSITDAGVKNIKDLTSMMSLNLSQNS 65

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL- 176
            +T   +++ +G+  LV L++      + GL +L+ L  L SL+++ C  +T  +++ L 
Sbjct: 66  HLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACK-VTWPEIRKLQ 124

Query: 177 -SGLTNLKSLQI 187
            + L NL  +++
Sbjct: 125 ATALPNLAGVRL 136



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 4/125 (3%)

Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN-CITDSDMKPLSGLTNLKS 184
           A   L  L  LDL        G   L+   KL+SL +  C   ITD+ +K +  LT++ S
Sbjct: 1   ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLEL--CGGSITDAGVKNIKDLTSMMS 58

Query: 185 LQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
           L +S  S +TD  +  + G+  L  LN+    VT A L  L  L +L  L+L  C+++  
Sbjct: 59  LNLSQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWP 118

Query: 244 GCEKF 248
              K 
Sbjct: 119 EIRKL 123


>gi|46447129|ref|YP_008494.1| hypothetical protein pc1495 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400770|emb|CAF24219.1| hypothetical protein pc1495 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 559

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 129/361 (35%), Positives = 185/361 (51%), Gaps = 33/361 (9%)

Query: 102 LRGLSN-LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLES 159
           +  LSN + +L+F  N  +T     A     NL  L L  C  I    L +L  L  L+ 
Sbjct: 220 INHLSNEIEALNFSNNTYLTDAHFSALKDCKNLKVLHLVSCQAITDDRLAHLTPLTALQH 279

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVT 217
           LN+  C  +TD+ +  L+ LT L+ L +S C  +TD+G+A+L  L+ L  LNL G   +T
Sbjct: 280 LNLSKCRKLTDTGLVHLTPLTALQHLDLSYCKNLTDAGLAHLTPLKALQHLNLRGFGKLT 339

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
            A L  L+ L +L YL+L+ C+                        +TD  L HL  LT 
Sbjct: 340 DAGLVHLTPLTALQYLDLSWCK-----------------------NLTDAGLAHLTPLTG 376

Query: 278 LESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-T 334
           L+ LNL     + D GL  L  L  L+ L+LSD + + S+GL  L+ LT L+ + LS+  
Sbjct: 377 LQHLNLSGWYHLTDAGLARLIFLTALQHLDLSDCENLTSAGLERLTSLTALQHLGLSYCM 436

Query: 335 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYL 392
            ++D  L  L  L++L+ LNL     +TD GL  LT LT L HL+L G   +TD+G AYL
Sbjct: 437 NLTDAGLIHLTPLTALQHLNLSGCFHLTDAGLVHLTPLTALQHLNLGGCENLTDAGLAYL 496

Query: 393 RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
                L+ L +     LT+AG+ H+  L++L  LNLS   NLTD  LE    L   ++L 
Sbjct: 497 TPLTALQHLNLSRCKHLTEAGLTHLASLTALQHLNLSYCDNLTDAGLERFKALAASLNLK 556

Query: 452 V 452
           +
Sbjct: 557 I 557



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 119/319 (37%), Positives = 171/319 (53%), Gaps = 32/319 (10%)

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
           ++E+LN      +TD+    L    NLK L  +SC  +TD  +A+L  L  L  LNL  C
Sbjct: 226 EIEALNFSNNTYLTDAHFSALKDCKNLKVLHLVSCQAITDDRLAHLTPLTALQHLNLSKC 285

Query: 215 -PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 271
             +T   L  L+ L +L +L+L+ C+ L+D G    + + +L+ LNL GF ++TD  LVH
Sbjct: 286 RKLTDTGLVHLTPLTALQHLDLSYCKNLTDAGLAHLTPLKALQHLNLRGFGKLTDAGLVH 345

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
           L  LT L+ L+L  C        NLT                 +GL HL+ LT L+ +NL
Sbjct: 346 LTPLTALQYLDLSWCK-------NLT----------------DAGLAHLTPLTGLQHLNL 382

Query: 332 S-FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGARITDSG 388
           S +  ++D  L +L  L++L+ L+L D   +T  GL  LTSLT L HL L +   +TD+G
Sbjct: 383 SGWYHLTDAGLARLIFLTALQHLDLSDCENLTSAGLERLTSLTALQHLGLSYCMNLTDAG 442

Query: 389 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
             +L     L+ L + G   LTDAG+ H+  L++L  LNL    NLTD  L  ++ LT L
Sbjct: 443 LIHLTPLTALQHLNLSGCFHLTDAGLVHLTPLTALQHLNLGGCENLTDAGLAYLTPLTAL 502

Query: 448 VSLNVSN-SRITSAGLRHL 465
             LN+S    +T AGL HL
Sbjct: 503 QHLNLSRCKHLTEAGLTHL 521



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 118/345 (34%), Positives = 181/345 (52%), Gaps = 36/345 (10%)

Query: 20  LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
           LT+    A +DC  L+ L L     + D  +  + +  ++L  ++LS    +TD+GL+HL
Sbjct: 238 LTDAHFSALKDCKNLKVLHLVSCQAITDDRLAHL-TPLTALQHLNLSKCRKLTDTGLVHL 296

Query: 78  KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
              + LQ LD ++C  ++D GL HL  L  L  L+ R            F  L +     
Sbjct: 297 TPLTALQHLDLSYCKNLTDAGLAHLTPLKALQHLNLR-----------GFGKLTD----- 340

Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSG 196
                    GLV+L  L  L+ L++ WC  +TD+ +  L+ LT L+ L +S    +TD+G
Sbjct: 341 --------AGLVHLTPLTALQYLDLSWCKNLTDAGLAHLTPLTGLQHLNLSGWYHLTDAG 392

Query: 197 IAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSL 254
           +A L  L  L  L+L  C  +T+A L+ L++L +L +L L+ C  L+D G    + + +L
Sbjct: 393 LARLIFLTALQHLDLSDCENLTSAGLERLTSLTALQHLGLSYCMNLTDAGLIHLTPLTAL 452

Query: 255 KVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQ 311
           + LNL G   +TD  LVHL  LT L+ LNL  C  + D GL  LT L  L+ L LS    
Sbjct: 453 QHLNLSGCFHLTDAGLVHLTPLTALQHLNLGGCENLTDAGLAYLTPLTALQHLNLSRCKH 512

Query: 312 VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL 355
           +  +GL HL+ LT L+ +NLS+   ++D  L +   L++  SLNL
Sbjct: 513 LTEAGLTHLASLTALQHLNLSYCDNLTDAGLERFKALAA--SLNL 555



 Score = 39.7 bits (91), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 57  SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
           ++L  ++L G  ++TD+GL +L   + LQ L+ + C  +++ GL HL  L+ L  L+   
Sbjct: 475 TALQHLNLGGCENLTDAGLAYLTPLTALQHLNLSRCKHLTEAGLTHLASLTALQHLNLSY 534

Query: 116 NNAITAQGMKAFAGLINLVKLDLER 140
            + +T  G++ F  L   + L + R
Sbjct: 535 CDNLTDAGLERFKALAASLNLKIIR 559


>gi|384245058|gb|EIE18554.1| L domain-like protein [Coccomyxa subellipsoidea C-169]
          Length = 731

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 140/397 (35%), Positives = 221/397 (55%), Gaps = 15/397 (3%)

Query: 70  TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
           T + L   K  S LQ L+   C +I D GL+ L  L++LTS++ +    ITAQG+ A +G
Sbjct: 312 TGAELREWKGLSLLQELNLKGCYKIEDAGLQGLSLLTSLTSINMQECWQITAQGLAALSG 371

Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
           L  ++ ++L+ C +I   L  L  L +L +LN++ C+ + DS + PLS L +L+SL +S 
Sbjct: 372 LSRMMDVNLQGCRKI-SSLEPLASLSRLAALNLRNCDGLGDSSLGPLSRLVSLRSLDLSG 430

Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRC-QLSDDGC 245
           C+ +T  G+  L  L  LT L L+ C     +A L  LS L +L  LNL+ C Q    G 
Sbjct: 431 CTHLTGRGLLPLSSLTGLTALKLQHCAGIRRSADLAPLSLLTALSTLNLSGCSQEEGAGI 490

Query: 246 EKFSKIGSLKVLNL-GFNEIT--DECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
              + +  L+ L+L G+  +T  D+ L+ L  L  + SLNL  C  + D GL  +  + +
Sbjct: 491 SSLATLTCLRALSLDGWRHVTFIDDGLMALTSLRGVASLNLQGCTSLTDVGLAAIGHMTS 550

Query: 302 LKCLELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL-DAR 358
           L  + L D  Q+   G    +G+ +L S++L + + +SD     +A ++SL++LNL +  
Sbjct: 551 LTNVNLQDCRQITGEGFAGWAGMAHLTSLSLQNASMVSDAGCCAIARITSLRTLNLKNCP 610

Query: 359 QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 416
            +TD  LAALT L  L HL L G  +++D+  A+     +L+ LE      LTDAG+  +
Sbjct: 611 ALTDDCLAALTPLERLCHLRLQGNQQLSDAALAHCARMPSLQHLETSNCWHLTDAGLTRL 670

Query: 417 KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNV 452
             L++L  L+LS    +TD+ +E L+  LT LV+LNV
Sbjct: 671 TALTTLAHLDLSYCWQVTDRGVEHLVKSLTTLVTLNV 707



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 138/412 (33%), Positives = 206/412 (50%), Gaps = 55/412 (13%)

Query: 57  SSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
           +SL  +DLSGS D+TD+GL+HL   S L++L    C+++S  GL   R L  +  LS R 
Sbjct: 223 TSLTHLDLSGSHDITDAGLLHLGSLSRLRTLVLWNCMRVSVDGLAVFRQLPAVADLSLRG 282

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCITDSDMK 174
              ++     + A L  L +LDL  C R  G  L   KGL  L+ LN+K C  I D+ ++
Sbjct: 283 CAQLSDALCGSVAHLEQLTRLDLRACERFTGAELREWKGLSLLQELNLKGCYKIEDAGLQ 342

Query: 175 PLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
            LS LT+L S+ +  C ++T  G+A L GL ++  +NL+GC   ++ L+ L++L  L  L
Sbjct: 343 GLSLLTSLTSINMQECWQITAQGLAALSGLSRMMDVNLQGCRKISS-LEPLASLSRLAAL 401

Query: 234 NLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
           NL  C  L D      S++ SL+ L+L G   +T   L+ L  LT L +L L  C     
Sbjct: 402 NLRNCDGLGDSSLGPLSRLVSLRSLDLSGCTHLTGRGLLPLSSLTGLTALKLQHCA---- 457

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS-LRKLAGLSSL 350
           G+                    S+ L  LS LT L ++NLS     +G+ +  LA L+ L
Sbjct: 458 GIRR------------------SADLAPLSLLTALSTLNLSGCSQEEGAGISSLATLTCL 499

Query: 351 KSLNLDA-RQIT--DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
           ++L+LD  R +T  D GL ALTSL G+  L+L G                          
Sbjct: 500 RALSLDGWRHVTFIDDGLMALTSLRGVASLNLQGCT-----------------------S 536

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
           LTD G+  I  ++SLT +NL     +T +     +G+  L SL++ N+ + S
Sbjct: 537 LTDVGLAAIGHMTSLTNVNLQDCRQITGEGFAGWAGMAHLTSLSLQNASMVS 588



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 157/559 (28%), Positives = 243/559 (43%), Gaps = 125/559 (22%)

Query: 27  AFRDCALQDLCLGQYPGV-NDKWMDVIASQGSSLLSVDLSG-SDVTDSGL---------- 74
           A+R  ALQ L +     V ND+  ++      +L SV L+G  DVTD GL          
Sbjct: 90  AYRFPALQQLDMSACRRVSNDELANL--RHLPNLTSVVLAGCEDVTDEGLLHLSHLSRLA 147

Query: 75  -IHLKDCSNL--------------QSLDFNFCIQ-------------------------- 93
            ++L +C  +               SL+ + C+                           
Sbjct: 148 SLNLSNCCKVTDGGLLALAALRQLGSLNLSGCVSLSERGLAAIAARLRRLHTLKLGGTSR 207

Query: 94  ---ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLV 149
              ISD  +  + GL++LT L    ++ IT  G+     L  L  L L  C R+   GL 
Sbjct: 208 VATISDASVAAIAGLTSLTHLDLSGSHDITDAGLLHLGSLSRLRTLVLWNCMRVSVDGLA 267

Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTL 208
             + L  +  L+++ C  ++D+    ++ L  L  L + +C + T + +   KGL  L  
Sbjct: 268 VFRQLPAVADLSLRGCAQLSDALCGSVAHLEQLTRLDLRACERFTGAELREWKGLSLLQE 327

Query: 209 LNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEIT 265
           LNL+GC  +  A L  LS L SL  +N+  C Q++  G    S +  +  +NL G  +I+
Sbjct: 328 LNLKGCYKIEDAGLQGLSLLTSLTSINMQECWQITAQGLAALSGLSRMMDVNLQGCRKIS 387

Query: 266 DECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGL 323
              L  L  L+ L +LNL +C G+GD  L  L+ L +L+ L+LS  T +   GL  LS L
Sbjct: 388 S--LEPLASLSRLAALNLRNCDGLGDSSLGPLSRLVSLRSLDLSGCTHLTGRGLLPLSSL 445

Query: 324 TNLESI--------------------------NLSFTGISDGS-LRKLAGLSSLKSLNLD 356
           T L ++                          NLS     +G+ +  LA L+ L++L+LD
Sbjct: 446 TGLTALKLQHCAGIRRSADLAPLSLLTALSTLNLSGCSQEEGAGISSLATLTCLRALSLD 505

Query: 357 A-RQIT--DTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSL------EICGG 406
             R +T  D GL ALTSL G+  L+L G   +TD G A + +  +L ++      +I G 
Sbjct: 506 GWRHVTFIDDGLMALTSLRGVASLNLQGCTSLTDVGLAAIGHMTSLTNVNLQDCRQITGE 565

Query: 407 G--------------------LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
           G                    ++DAG   I  ++SL  LNL     LTD  L  ++ L  
Sbjct: 566 GFAGWAGMAHLTSLSLQNASMVSDAGCCAIARITSLRTLNLKNCPALTDDCLAALTPLER 625

Query: 447 LVSLNVS-NSRITSAGLRH 464
           L  L +  N +++ A L H
Sbjct: 626 LCHLRLQGNQQLSDAALAH 644


>gi|290970571|ref|XP_002668179.1| predicted protein [Naegleria gruberi]
 gi|284081412|gb|EFC35435.1| predicted protein [Naegleria gruberi]
          Length = 592

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 116/413 (28%), Positives = 214/413 (51%), Gaps = 8/413 (1%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L SVD+SG+ +   G   + +   L SL+ +  I I   G + + G+ +LTSL     N 
Sbjct: 135 LTSVDISGNRIGIEGAKSISEMKQLTSLNISNNI-IGVEGAKSISGMKHLTSLDI-SGNR 192

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           I  +G+K+ + +  L+ LD+   T + G  G   +  + +L SL+I + N I     K +
Sbjct: 193 IGDEGVKSISEMEQLISLDI--STNVIGGEGAKFISEMKQLTSLDI-FYNRIGGEGAKLI 249

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           S +  L SL IS +++   G   +  +++LT LN+ G  +    + S+S +  L  LN++
Sbjct: 250 SEMKQLTSLNISTNEIDVEGSKLISEMKQLTSLNISGNLIGVEGVKSISGMKQLTSLNIS 309

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
              + D+G +  S++  L  L++  N I DE +  +  +  L S ++ +  I DEG  ++
Sbjct: 310 GNLIGDEGAKLISEMKQLTSLDIYNNRIGDEGVKSISEMKQLTSFDISNNLIYDEGAKSI 369

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
           +G+  L  L +S+ ++G  G++ +S +  L S+N+S   I     + ++G+  L SL + 
Sbjct: 370 SGMKQLTSLTISNNRIGGEGVKFISEIKQLTSLNISKNEIDGEGAKFISGMKQLTSLTIY 429

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
              I D G+ +++ +  LT LD+   RI D G   +   + L SL+I    +   G K I
Sbjct: 430 KNGIGDEGVKSISEMKQLTSLDISNNRIGDEGVKSISEMEQLISLDISTNVIGGEGAKFI 489

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
            ++  LT L++S N  + D+ ++ IS +  L SLN+S ++I   G + ++  +
Sbjct: 490 SEMKQLTSLDISGNL-IYDEGVKSISEMKQLTSLNISGNQIGVEGAKFISEMK 541



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 192/377 (50%), Gaps = 3/377 (0%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+   L+S+D+S + +   G   + +   L SLD  F  +I   G + +  +  LTSL+ 
Sbjct: 202 SEMEQLISLDISTNVIGGEGAKFISEMKQLTSLDI-FYNRIGGEGAKLISEMKQLTSLNI 260

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
              N I  +G K  + +  L  L++        G+ ++ G+ +L SLNI   N I D   
Sbjct: 261 S-TNEIDVEGSKLISEMKQLTSLNISGNLIGVEGVKSISGMKQLTSLNIS-GNLIGDEGA 318

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           K +S +  L SL I  +++ D G+  +  +++LT  ++    +      S+S +  L  L
Sbjct: 319 KLISEMKQLTSLDIYNNRIGDEGVKSISEMKQLTSFDISNNLIYDEGAKSISGMKQLTSL 378

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
            ++  ++  +G +  S+I  L  LN+  NEI  E    + G+  L SL +   GIGDEG+
Sbjct: 379 TISNNRIGGEGVKFISEIKQLTSLNISKNEIDGEGAKFISGMKQLTSLTIYKNGIGDEGV 438

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
            +++ +  L  L++S+ ++G  G++ +S +  L S+++S   I     + ++ +  L SL
Sbjct: 439 KSISEMKQLTSLDISNNRIGDEGVKSISEMEQLISLDISTNVIGGEGAKFISEMKQLTSL 498

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
           ++    I D G+ +++ +  LT L++ G +I   GA ++   K L SL+I    + DAG 
Sbjct: 499 DISGNLIYDEGVKSISEMKQLTSLNISGNQIGVEGAKFISEMKQLTSLDISKNEIGDAGA 558

Query: 414 KHIKDLSSLTLLNLSQN 430
           K I ++  LT L++  N
Sbjct: 559 KFISEMKQLTSLDVYAN 575



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 179/372 (48%), Gaps = 22/372 (5%)

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK----------------GLMKL 157
           +  + +  Q  K FA    L +++L R ++    +VN+K                G+ +L
Sbjct: 80  KERSKLVIQFKKKFA----LKRIELFRKSQFMNCIVNVKFSSWTLDAFEQPKFISGMKQL 135

Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
            S++I   N I     K +S +  L SL IS + +   G   + G++ LT L++ G  + 
Sbjct: 136 TSVDIS-GNRIGIEGAKSISEMKQLTSLNISNNIIGVEGAKSISGMKHLTSLDISGNRIG 194

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
              + S+S +  L  L+++   +  +G +  S++  L  L++ +N I  E    +  +  
Sbjct: 195 DEGVKSISEMEQLISLDISTNVIGGEGAKFISEMKQLTSLDIFYNRIGGEGAKLISEMKQ 254

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           L SLN+ +  I  EG   ++ +  L  L +S   +G  G++ +SG+  L S+N+S   I 
Sbjct: 255 LTSLNISTNEIDVEGSKLISEMKQLTSLNISGNLIGVEGVKSISGMKQLTSLNISGNLIG 314

Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
           D   + ++ +  L SL++   +I D G+ +++ +  LT  D+    I D GA  +   K 
Sbjct: 315 DEGAKLISEMKQLTSLDIYNNRIGDEGVKSISEMKQLTSFDISNNLIYDEGAKSISGMKQ 374

Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
           L SL I    +   GVK I ++  LT LN+S+N  +  +  + ISG+  L SL +  + I
Sbjct: 375 LTSLTISNNRIGGEGVKFISEIKQLTSLNISKN-EIDGEGAKFISGMKQLTSLTIYKNGI 433

Query: 458 TSAGLRHLNHAR 469
              G++ ++  +
Sbjct: 434 GDEGVKSISEMK 445



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 123/263 (46%), Gaps = 27/263 (10%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+   L S+D+  + + D G+  + +   L S D +  + I D G + + G+  LTSL+ 
Sbjct: 322 SEMKQLTSLDIYNNRIGDEGVKSISEMKQLTSFDISNNL-IYDEGAKSISGMKQLTSLTI 380

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
             NN I  +G+K  + +  L  L++ +      G   + G+ +L SL I + N I D  +
Sbjct: 381 S-NNRIGGEGVKFISEIKQLTSLNISKNEIDGEGAKFISGMKQLTSLTI-YKNGIGDEGV 438

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIA------------------------YLKGLQKLTLL 209
           K +S +  L SL IS +++ D G+                         ++  +++LT L
Sbjct: 439 KSISEMKQLTSLDISNNRIGDEGVKSISEMEQLISLDISTNVIGGEGAKFISEMKQLTSL 498

Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
           ++ G  +    + S+S +  L  LN++  Q+  +G +  S++  L  L++  NEI D   
Sbjct: 499 DISGNLIYDEGVKSISEMKQLTSLNISGNQIGVEGAKFISEMKQLTSLDISKNEIGDAGA 558

Query: 270 VHLKGLTNLESLNLDSCGIGDEG 292
             +  +  L SL++ +  I DE 
Sbjct: 559 KFISEMKQLTSLDVYANRISDEA 581


>gi|442319589|ref|YP_007359610.1| hypothetical protein MYSTI_02610 [Myxococcus stipitatus DSM 14675]
 gi|441487231|gb|AGC43926.1| hypothetical protein MYSTI_02610 [Myxococcus stipitatus DSM 14675]
          Length = 600

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 123/424 (29%), Positives = 204/424 (48%), Gaps = 31/424 (7%)

Query: 43  GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
           GV +  +     +G+SL+++  SGS + D+ L  L+D +  ++L  +   +++D GL HL
Sbjct: 103 GVPEPTLLAALVRGTSLVTLRASGSSLGDAHLGALRDFTAWEALHLD-GTRVTDAGLPHL 161

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
            GL  L+ +      AI+ +G+    GL  L ++ L   +    GL  L    +LE L++
Sbjct: 162 SGLRRLSVVRLE-ETAISDKGLAFLEGLTTLRRVGLAGTSVSAQGLRFLSAQAELEWLDL 220

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
              +  TD  +       +L +L +S ++VTD+G+A L+ +  LT               
Sbjct: 221 --SDTSTDDRVLAWVSGAHLHTLILSGTQVTDAGLARLRDMPHLT--------------- 263

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
                    +L L R  L+D G      + +L+ L+LG  ++TD  L+HL    +LE+L 
Sbjct: 264 ---------WLGLARTGLTDGGLAPIGALRALEALHLGETQVTDAGLLHLAESKSLEALV 314

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
           L    +   GL +L GL  L+ L L DT++  + +RHL GL  L  + LS T I+   L 
Sbjct: 315 LTKTRLHGPGLQHLAGLTRLELLHLDDTRLDDAAMRHLRGLVALRELELSRTLITGAGLA 374

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
            L  LS+L+ L +    +T   LA L     LT LDL    +     A++ +   LR L+
Sbjct: 375 SLDALSALERLGVSGLAVTADALAVLQKTERLTRLDLSHTPVGPEALAHVPS--GLRELD 432

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
           +      D  +  ++ LS L  L  ++   LTD  L  +  LT L +L++S + +  +GL
Sbjct: 433 LSRTAFNDEWLPSLRRLSRLQSLR-AERTLLTDLGLGQLGELTELAALHLSGTLVNGSGL 491

Query: 463 RHLN 466
            HL 
Sbjct: 492 AHLQ 495



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 122/358 (34%), Positives = 180/358 (50%), Gaps = 11/358 (3%)

Query: 56  GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
           G+ L ++ LSG+ VTD+GL  L+D  +L  L       ++DGGL  +  L  L +L    
Sbjct: 235 GAHLHTLILSGTQVTDAGLARLRDMPHLTWLGLART-GLTDGGLAPIGALRALEALHLGE 293

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMK 174
              +T  G+   A   +L  L L + TR+HG GL +L GL +LE L++     + D+ M+
Sbjct: 294 TQ-VTDAGLLHLAESKSLEALVLTK-TRLHGPGLQHLAGLTRLELLHLD-DTRLDDAAMR 350

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
            L GL  L+ L++S + +T +G+A L  L  L  L + G  VTA  L  L     L  L+
Sbjct: 351 HLRGLVALRELELSRTLITGAGLASLDALSALERLGVSGLAVTADALAVLQKTERLTRLD 410

Query: 235 LNRCQLSDDGCEKFSKIGS-LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           L+   +   G E  + + S L+ L+L      DE L  L+ L+ L+SL  +   + D GL
Sbjct: 411 LSHTPV---GPEALAHVPSGLRELDLSRTAFNDEWLPSLRRLSRLQSLRAERTLLTDLGL 467

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
             L  L  L  L LS T V  SGL HL  L +L  ++L  T +       L GL+ L  L
Sbjct: 468 GQLGELTELAALHLSGTLVNGSGLAHLQRLPHLAHLDLGATWLEAHYTPALQGLTRLTWL 527

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
           +L   ++ D  L  L    GL  L L    +TD+G   LR+  +LR L++ G  +TDA
Sbjct: 528 SLARGRLGDAALGHLPP--GLHTLYLTRTGVTDAGLDSLRSLPHLRQLDLRGTAVTDA 583


>gi|168701995|ref|ZP_02734272.1| hypothetical protein GobsU_20883 [Gemmata obscuriglobus UQM 2246]
          Length = 684

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 139/463 (30%), Positives = 204/463 (44%), Gaps = 58/463 (12%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           +L  + L G+ VTD+GL HLK  SNL  L+  +   ++D GL  L     LTSL + +  
Sbjct: 64  ALTRIILHGTKVTDAGLAHLKGLSNLAHLNLAYS-GVTDAGLADLNAFPLLTSL-WVQGT 121

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
            ++  G+     L  L  +DL        GL +LK         +     +TD+++  L 
Sbjct: 122 TVSDAGLAVARELPALTHIDLSGTKVTGPGLAHLK--GLKGLTLLLSGTALTDANLCYLK 179

Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL----------SAL 227
           GLT +  L +S + +TD+G+++L  L+ L  L++     T A L  L           + 
Sbjct: 180 GLTGVVELSLSDTPLTDAGLSHLHDLKALGTLDVRKTRATPASLAELHKSVPGCRIRDSA 239

Query: 228 GSLFYLNLNRC------------------------------------------QLSDDGC 245
           G    L++NR                                            + DD  
Sbjct: 240 GDRPPLDVNRLAAEWVLSVGGSVGVSGQPRDIRAAADLPQGPLALARVNLSDRSVKDDDL 299

Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
            + +    L  L L    +TD  L +LK L  L+ L+L    + D GL  +    +L  L
Sbjct: 300 GRLAGCTGLTELVLHETRVTDAALGYLKNLARLQFLSLTGTDVTDAGLARIRERKSLTTL 359

Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
            LS T+V ++GL HL+GL  L  I+L  TG+SD  L  L GL+ LK+L L   ++   GL
Sbjct: 360 HLSSTKVTNAGLVHLAGLAGLSHIHLDGTGVSDAGLVHLKGLTDLKTLGLSRTRVLGPGL 419

Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
           A   S   L  L L    +TD   A+L     LR L   G GLTDAG+ H++ L+ L  L
Sbjct: 420 AHTHSWKRLDALYLTNTGVTDEAFAHLSPHHTLRHLGADGTGLTDAGMAHVRHLTGLISL 479

Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHA 468
           NLS    + D  L  +    G   L V N+++T  GL H  HA
Sbjct: 480 NLSDTA-VGDAGLMQLGSNAGPTHLTVRNTKVTLRGL-HAFHA 520



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 117/417 (28%), Positives = 174/417 (41%), Gaps = 85/417 (20%)

Query: 30  DCALQDLCLGQYPGVNDKWMD---------VIASQGSSLLSVDLSGSDVTDSGLIHLKDC 80
           D  L DL    +P +   W+           +A +  +L  +DLSG+ VT  GL HLK  
Sbjct: 101 DAGLADL--NAFPLLTSLWVQGTTVSDAGLAVARELPALTHIDLSGTKVTGPGLAHLKGL 158

Query: 81  -------SNLQSLDFNFCI---------------QISDGGLEHLRGLSNLTSLSFRRNNA 118
                  S     D N C                 ++D GL HL  L  L +L  R+  A
Sbjct: 159 KGLTLLLSGTALTDANLCYLKGLTGVVELSLSDTPLTDAGLSHLHDLKALGTLDVRKTRA 218

Query: 119 ITA---------QGMKAFAGLINLVKLDLERCTR------------------IHGGLVNL 151
             A          G +      +   LD+ R                     I       
Sbjct: 219 TPASLAELHKSVPGCRIRDSAGDRPPLDVNRLAAEWVLSVGGSVGVSGQPRDIRAAADLP 278

Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
           +G + L  +N+     + D D+  L+G T L  L +  ++VTD+ + YLK L +L  L+L
Sbjct: 279 QGPLALARVNLS-DRSVKDDDLGRLAGCTGLTELVLHETRVTDAALGYLKNLARLQFLSL 337

Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
            G  VT                        D G  +  +  SL  L+L   ++T+  LVH
Sbjct: 338 TGTDVT------------------------DAGLARIRERKSLTTLHLSSTKVTNAGLVH 373

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
           L GL  L  ++LD  G+ D GLV+L GL +LK L LS T+V   GL H      L+++ L
Sbjct: 374 LAGLAGLSHIHLDGTGVSDAGLVHLKGLTDLKTLGLSRTRVLGPGLAHTHSWKRLDALYL 433

Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
           + TG++D +   L+   +L+ L  D   +TD G+A +  LTGL  L+L    + D+G
Sbjct: 434 TNTGVTDEAFAHLSPHHTLRHLGADGTGLTDAGMAHVRHLTGLISLNLSDTAVGDAG 490



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 172/396 (43%), Gaps = 62/396 (15%)

Query: 84  QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
           Q  D      +  G L   R   NL+  S + ++      +   AG   L +L L     
Sbjct: 267 QPRDIRAAADLPQGPLALAR--VNLSDRSVKDDD------LGRLAGCTGLTELVLHETRV 318

Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
               L  LK L +L+ L++   + +TD+ +  +    +L +L +S +KVT++G+ +L GL
Sbjct: 319 TDAALGYLKNLARLQFLSLTGTD-VTDAGLARIRERKSLTTLHLSSTKVTNAGLVHLAGL 377

Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
             L+ ++L+G  V+ A L  L  L  L  L L+R ++   G         L  L L    
Sbjct: 378 AGLSHIHLDGTGVSDAGLVHLKGLTDLKTLGLSRTRVLGPGLAHTHSWKRLDALYLTNTG 437

Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL--- 320
           +TDE   HL     L  L  D  G+ D G+ ++  L  L  L LSDT VG +GL  L   
Sbjct: 438 VTDEAFAHLSPHHTLRHLGADGTGLTDAGMAHVRHLTGLISLNLSDTAVGDAGLMQLGSN 497

Query: 321 SGLTNLESINLSFT-----------------------------------GISDGSLRKLA 345
           +G T+L   N   T                                    ++ G   +++
Sbjct: 498 AGPTHLTVRNTKVTLRGLHAFHATGPWRTVTWDGGQLGPTEADRSAARWALAAGGRLRVS 557

Query: 346 GLSS--------------LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
           G+ +              +  L L+   ++DT LAAL  LTG++ LDL G+ IT+ G A+
Sbjct: 558 GVPNEIVAAGELPKRKFVVTELALNGLAVSDTELAALKYLTGMSRLDLAGSAITNDGLAH 617

Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
           L+    LR L +    +TDAG+  IK L  LT L+L
Sbjct: 618 LKGLTGLRRLGLSETRVTDAGLDAIKAL-PLTELDL 652



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 99/189 (52%), Gaps = 2/189 (1%)

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           L + +L    + D  L  L     L  + L  T+V  +GL HL GL+NL  +NL+++G++
Sbjct: 41  LTAADLTDRAVADADLARLKDCQALTRIILHGTKVTDAGLAHLKGLSNLAHLNLAYSGVT 100

Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
           D  L  L     L SL +    ++D GLA    L  LTH+DL G ++T  G A+L     
Sbjct: 101 DAGLADLNAFPLLTSLWVQGTTVSDAGLAVARELPALTHIDLSGTKVTGPGLAHL-KGLK 159

Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
             +L + G  LTDA + ++K L+ +  L+LS +  LTD  L  +  L  L +L+V  +R 
Sbjct: 160 GLTLLLSGTALTDANLCYLKGLTGVVELSLS-DTPLTDAGLSHLHDLKALGTLDVRKTRA 218

Query: 458 TSAGLRHLN 466
           T A L  L+
Sbjct: 219 TPASLAELH 227



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 92/213 (43%), Gaps = 25/213 (11%)

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
           L +  ++   V D+ +A LK  Q LT + L G  VT A L  L  L +L +LNL      
Sbjct: 41  LTAADLTDRAVADADLARLKDCQALTRIILHGTKVTDAGLAHLKGLSNLAHLNL------ 94

Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
                              ++ +TD  L  L     L SL +    + D GL     L  
Sbjct: 95  ------------------AYSGVTDAGLADLNAFPLLTSLWVQGTTVSDAGLAVARELPA 136

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
           L  ++LS T+V   GL HL       ++ LS T ++D +L  L GL+ +  L+L    +T
Sbjct: 137 LTHIDLSGTKVTGPGLAHLK-GLKGLTLLLSGTALTDANLCYLKGLTGVVELSLSDTPLT 195

Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
           D GL+ L  L  L  LD+   R T +  A L  
Sbjct: 196 DAGLSHLHDLKALGTLDVRKTRATPASLAELHK 228


>gi|46446665|ref|YP_008030.1| hypothetical protein pc1031 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400306|emb|CAF23755.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 553

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 130/362 (35%), Positives = 186/362 (51%), Gaps = 34/362 (9%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           +TD+ L+ LKDC NL+ L    C  ++D GL HL  L+ L  L       +T  G+    
Sbjct: 207 LTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHLTPLTALQRLDLSYCENLTDDGLAHLT 266

Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
            L  L  LDL  C  +   GL +L  L  L+ L +  C  +TD+ +  L+ LT L+ L +
Sbjct: 267 PLTALQHLDLSYCENLTDDGLAHLAPLKALQRLALTNCKNLTDAGLTHLTTLTALQHLDL 326

Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
           S   K+TD+G+A+LK L  L  L+L  C  +T A +  L  L +L +L+L++ + L+D G
Sbjct: 327 SQYWKLTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQHLDLSQYRNLTDAG 386

Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 302
               + +  L+ LNL     +TD  L HL  LT L+ LNL SC  + D GLV+L  L  L
Sbjct: 387 LAHLTPLMGLQYLNLSACKNLTDAGLAHLAPLTALQHLNLSSCYNLTDAGLVHLIPLTAL 446

Query: 303 KCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
           + L LSD + +  +GL HL+ LT L+ +NLS                       + R++T
Sbjct: 447 QHLYLSDWENLTDTGLAHLAPLTALQHLNLS-----------------------NCRKLT 483

Query: 362 DTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRS--LEICGGGLTDAGVKHIKD 418
           D GLA L SL  LTHLDL +    TD G  +L     L+   L +C   LTD G+   K 
Sbjct: 484 DDGLAHLKSLVTLTHLDLSWCKNFTDEGLTHLTPLTGLQYLVLSLC-YHLTDDGLARFKT 542

Query: 419 LS 420
           L+
Sbjct: 543 LA 544



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 126/362 (34%), Positives = 194/362 (53%), Gaps = 17/362 (4%)

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIK 163
           L  + +L+F  N  +T   + A     NL  L  ++C  +   GL +L  L  L+ L++ 
Sbjct: 193 LKKIETLNFSDNAYLTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHLTPLTALQRLDLS 252

Query: 164 WCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACL 221
           +C  +TD  +  L+ LT L+ L +S C  +TD G+A+L  L+ L  L L  C  +T A L
Sbjct: 253 YCENLTDDGLAHLTPLTALQHLDLSYCENLTDDGLAHLAPLKALQRLALTNCKNLTDAGL 312

Query: 222 DSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLE 279
             L+ L +L +L+L++  +L+D G      + +L+ L+L     +TD  + HLK LT L+
Sbjct: 313 THLTTLTALQHLDLSQYWKLTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQ 372

Query: 280 SLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGI 336
            L+L     + D GL +LT L  L+ L LS  + +  +GL HL+ LT L+ +NLS    +
Sbjct: 373 HLDLSQYRNLTDAGLAHLTPLMGLQYLNLSACKNLTDAGLAHLAPLTALQHLNLSSCYNL 432

Query: 337 SDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRN 394
           +D  L  L  L++L+ L L D   +TDTGLA L  LT L HL+L   R +TD G A+L++
Sbjct: 433 TDAGLVHLIPLTALQHLYLSDWENLTDTGLAHLAPLTALQHLNLSNCRKLTDDGLAHLKS 492

Query: 395 FKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
              L  L++      TD G+ H+  L+ L  L LS   +LTD       GL    +L VS
Sbjct: 493 LVTLTHLDLSWCKNFTDEGLTHLTPLTGLQYLVLSLCYHLTD------DGLARFKTLAVS 546

Query: 454 NS 455
           ++
Sbjct: 547 HN 548



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 117/339 (34%), Positives = 179/339 (52%), Gaps = 11/339 (3%)

Query: 20  LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
           LT+  L A +DC  L+ L   +  GV D  +  + +  ++L  +DLS   ++TD GL HL
Sbjct: 207 LTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHL-TPLTALQRLDLSYCENLTDDGLAHL 265

Query: 78  KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
              + LQ LD ++C  ++D GL HL  L  L  L+      +T  G+     L  L  LD
Sbjct: 266 TPLTALQHLDLSYCENLTDDGLAHLAPLKALQRLALTNCKNLTDAGLTHLTTLTALQHLD 325

Query: 138 LERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDS 195
           L +  ++   GL +LK L  L+ L++  C  +TD+ +  L  LT L+ L +S  + +TD+
Sbjct: 326 LSQYWKLTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQHLDLSQYRNLTDA 385

Query: 196 GIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGS 253
           G+A+L  L  L  LNL  C  +T A L  L+ L +L +LNL+ C  L+D G      + +
Sbjct: 386 GLAHLTPLMGLQYLNLSACKNLTDAGLAHLAPLTALQHLNLSSCYNLTDAGLVHLIPLTA 445

Query: 254 LKVLNLG-FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ 311
           L+ L L  +  +TD  L HL  LT L+ LNL +C  + D+GL +L  L  L  L+LS  +
Sbjct: 446 LQHLYLSDWENLTDTGLAHLAPLTALQHLNLSNCRKLTDDGLAHLKSLVTLTHLDLSWCK 505

Query: 312 -VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLS 348
                GL HL+ LT L+ + LS    ++D  L +   L+
Sbjct: 506 NFTDEGLTHLTPLTGLQYLVLSLCYHLTDDGLARFKTLA 544



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 116/321 (36%), Positives = 170/321 (52%), Gaps = 32/321 (9%)

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLE 212
           L K+E+LN      +TD+ +  L    NLK L    C  VTD+G+A+L  L  L  L+L 
Sbjct: 193 LKKIETLNFSDNAYLTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHLTPLTALQRLDLS 252

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVH 271
            C                         L+DDG    + + +L+ L+L + E +TD+ L H
Sbjct: 253 YCE-----------------------NLTDDGLAHLTPLTALQHLDLSYCENLTDDGLAH 289

Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESI 329
           L  L  L+ L L +C  + D GL +LT L  L+ L+LS   ++  +GL HL  LT L+ +
Sbjct: 290 LAPLKALQRLALTNCKNLTDAGLTHLTTLTALQHLDLSQYWKLTDAGLAHLKPLTALQHL 349

Query: 330 NLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITD 386
           +LS    ++D  +  L  L++L+ L+L   R +TD GLA LT L GL +L+L   + +TD
Sbjct: 350 DLSLCYYLTDAGIAHLKPLTALQHLDLSQYRNLTDAGLAHLTPLMGLQYLNLSACKNLTD 409

Query: 387 SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
           +G A+L     L+ L +     LTDAG+ H+  L++L  L LS   NLTD  L  ++ LT
Sbjct: 410 AGLAHLAPLTALQHLNLSSCYNLTDAGLVHLIPLTALQHLYLSDWENLTDTGLAHLAPLT 469

Query: 446 GLVSLNVSNSR-ITSAGLRHL 465
            L  LN+SN R +T  GL HL
Sbjct: 470 ALQHLNLSNCRKLTDDGLAHL 490



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 117/245 (47%), Gaps = 30/245 (12%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           +TD+GL HLK  + LQ LD + C  ++D G+ HL+ L+ L  L   +   +T  G+    
Sbjct: 332 LTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQHLDLSQYRNLTDAGLAHLT 391

Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
            L+ L  L+L  C  +   GL +L  L  L+ LN+  C  +TD+ +  L  LT L+ L +
Sbjct: 392 PLMGLQYLNLSACKNLTDAGLAHLAPLTALQHLNLSSCYNLTDAGLVHLIPLTALQHLYL 451

Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
           S    +TD+G+A+L  L  L  LNL  C                        +L+DDG  
Sbjct: 452 SDWENLTDTGLAHLAPLTALQHLNLSNCR-----------------------KLTDDGLA 488

Query: 247 KFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC---N 301
               + +L  L+L +    TDE L HL  LT L+ L L  C  + D+GL     L    N
Sbjct: 489 HLKSLVTLTHLDLSWCKNFTDEGLTHLTPLTGLQYLVLSLCYHLTDDGLARFKTLAVSHN 548

Query: 302 LKCLE 306
           LK ++
Sbjct: 549 LKIIK 553


>gi|46445833|ref|YP_007198.1| F-box protein [Candidatus Protochlamydia amoebophila UWE25]
 gi|46399474|emb|CAF22923.1| putative F-box protein [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 337

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 119/331 (35%), Positives = 185/331 (55%), Gaps = 9/331 (2%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           +L  ++L    +TD+GL HLK    LQ L+ ++C  ++D GL HL  L+ L  L+     
Sbjct: 6   ALQHLELGCCKLTDAGLAHLKSLVALQHLNLSWCDNLTDTGLAHLTPLTALQHLNLSVCG 65

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
            +T  G+     L+ L  LDL +C ++   GL +L  L+ L+ L ++ C  +TD  +  L
Sbjct: 66  KLTGAGLAHLTPLVALENLDLSQCGKLTDAGLAHLTPLVALQHLGMRGCRKLTDVGLAHL 125

Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLN 234
             L  L+ L +  CS +TD+G+A+L+ L  L  LNL+ C  +T   L  L  L +L +L+
Sbjct: 126 RPLVALQHLDLDGCSNLTDAGLAHLRPLVALQHLNLKRCDNLTDIGLAHLRPLVALQHLD 185

Query: 235 LNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDE 291
           L+ C  L+D G    + + +L+ LNL G  + TD  L HL  L  L+ LNL  C  + D 
Sbjct: 186 LDGCNNLTDAGLAHLTPLVALQHLNLRGCFKFTDAGLAHLTPLVALQYLNLSDCSNLTDA 245

Query: 292 GLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSS 349
           GL +L  L  L+ L LS  +++  +GL HL+ L  LE ++LS  G ++D  L  LA L++
Sbjct: 246 GLAHLKSLVALQHLNLSWCSKLTGAGLAHLTPLVALEDLDLSQCGKLTDAGLAHLALLTA 305

Query: 350 LKSLNLD-ARQITDTGLAALTSLTGLTHLDL 379
           L+ LNL+  R++TD GLA   +L    +L+L
Sbjct: 306 LQYLNLERCRKLTDAGLAHFKTLAASIYLNL 336



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 122/334 (36%), Positives = 184/334 (55%), Gaps = 10/334 (2%)

Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
           L+ L  L+L  C     GL +LK L+ L+ LN+ WC+ +TD+ +  L+ LT L+ L +S 
Sbjct: 4   LVALQHLELGCCKLTDAGLAHLKSLVALQHLNLSWCDNLTDTGLAHLTPLTALQHLNLSV 63

Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCE 246
           C K+T +G+A+L  L  L  L+L  C  +T A L  L+ L +L +L +  C +L+D G  
Sbjct: 64  CGKLTGAGLAHLTPLVALENLDLSQCGKLTDAGLAHLTPLVALQHLGMRGCRKLTDVGLA 123

Query: 247 KFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKC 304
               + +L+ L+L G + +TD  L HL+ L  L+ LNL  C  + D GL +L  L  L+ 
Sbjct: 124 HLRPLVALQHLDLDGCSNLTDAGLAHLRPLVALQHLNLKRCDNLTDIGLAHLRPLVALQH 183

Query: 305 LELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQIT 361
           L+L     +  +GL HL+ L  L+ +NL      +D  L  L  L +L+ LNL D   +T
Sbjct: 184 LDLDGCNNLTDAGLAHLTPLVALQHLNLRGCFKFTDAGLAHLTPLVALQYLNLSDCSNLT 243

Query: 362 DTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDL 419
           D GLA L SL  L HL+L + +++T +G A+L     L  L++   G LTDAG+ H+  L
Sbjct: 244 DAGLAHLKSLVALQHLNLSWCSKLTGAGLAHLTPLVALEDLDLSQCGKLTDAGLAHLALL 303

Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
           ++L  LNL +   LTD  L     L   + LN+ 
Sbjct: 304 TALQYLNLERCRKLTDAGLAHFKTLAASIYLNLQ 337



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 111/306 (36%), Positives = 154/306 (50%), Gaps = 44/306 (14%)

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           M+PL  L   + L++ C K+TD+G+A+LK L  L  LNL  C                  
Sbjct: 1   MRPLVAL---QHLELGCCKLTDAGLAHLKSLVALQHLNLSWCD----------------- 40

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGD 290
                  L+D G    + + +L+ LNL    ++T   L HL  L  LE+L+L  CG + D
Sbjct: 41  ------NLTDTGLAHLTPLTALQHLNLSVCGKLTGAGLAHLTPLVALENLDLSQCGKLTD 94

Query: 291 EGLVNLTGLCNLK------CLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRK 343
            GL +LT L  L+      C +L+D      GL HL  L  L+ ++L   + ++D  L  
Sbjct: 95  AGLAHLTPLVALQHLGMRGCRKLTDV-----GLAHLRPLVALQHLDLDGCSNLTDAGLAH 149

Query: 344 LAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSL 401
           L  L +L+ LNL     +TD GLA L  L  L HLDL G   +TD+G A+L     L+ L
Sbjct: 150 LRPLVALQHLNLKRCDNLTDIGLAHLRPLVALQHLDLDGCNNLTDAGLAHLTPLVALQHL 209

Query: 402 EICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITS 459
            + G    TDAG+ H+  L +L  LNLS   NLTD  L  +  L  L  LN+S  S++T 
Sbjct: 210 NLRGCFKFTDAGLAHLTPLVALQYLNLSDCSNLTDAGLAHLKSLVALQHLNLSWCSKLTG 269

Query: 460 AGLRHL 465
           AGL HL
Sbjct: 270 AGLAHL 275



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 104/227 (45%), Gaps = 36/227 (15%)

Query: 18  RCLTEVSLEAFRD-CALQDLCLGQYPGVNDKWM----DVIASQGSSLLSVDLSGSDVTDS 72
           R LT+V L   R   ALQ L L     + D  +     ++A Q  +L   D    ++TD 
Sbjct: 115 RKLTDVGLAHLRPLVALQHLDLDGCSNLTDAGLAHLRPLVALQHLNLKRCD----NLTDI 170

Query: 73  GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
           GL HL+    LQ LD + C  ++D GL HL  L  L  L+ R     T  G+     L+ 
Sbjct: 171 GLAHLRPLVALQHLDLDGCNNLTDAGLAHLTPLVALQHLNLRGCFKFTDAGLAHLTPLVA 230

Query: 133 LVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS--- 188
           L  L+L  C+ +   GL +LK L+ L+ LN+ WC+ +T + +  L+ L  L+ L +S   
Sbjct: 231 LQYLNLSDCSNLTDAGLAHLKSLVALQHLNLSWCSKLTGAGLAHLTPLVALEDLDLSQCG 290

Query: 189 -----------------------CSKVTDSGIAYLKGLQKLTLLNLE 212
                                  C K+TD+G+A+ K L     LNL+
Sbjct: 291 KLTDAGLAHLALLTALQYLNLERCRKLTDAGLAHFKTLAASIYLNLQ 337


>gi|290973802|ref|XP_002669636.1| predicted protein [Naegleria gruberi]
 gi|284083186|gb|EFC36892.1| predicted protein [Naegleria gruberi]
          Length = 548

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 138/426 (32%), Positives = 207/426 (48%), Gaps = 21/426 (4%)

Query: 46  DKWMDVIAS---QGSSLLSVDLSGSDVTDS--GLIHLKDCSNLQSLDFNFCI-QISDGGL 99
           +KW D I     +   +LS+ + G ++ +   G I  K   NL  LD   C  +I    +
Sbjct: 76  EKWTDFIERSNLEMDKVLSLTIDGVELIEEQCGTISTK-LVNLTQLDL--CRNKIKPTVV 132

Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
           + L  L+NL  L+   +N I   G K  + L +L  LDL        G   L  L  L  
Sbjct: 133 KGLSSLTNLKKLNLG-HNEIGNDGAKHVSSLTHLTALDLFDNGIGPNGAQRLSSLTNLTQ 191

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
           LN+   N I D+  + +S LTNL  L +  +K+  +G+  L+GL+KLT L+L G  +   
Sbjct: 192 LNL-GNNEIGDAGAEHISSLTNLTQLNLRITKLGANGVKSLRGLKKLTELDLSGNQIGYE 250

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +++LS L +L  LNL   +++ DG E+   + +L  L+L           HL  L NL 
Sbjct: 251 GVNNLSELKNLKKLNLGNNRITGDGAERLCGLENLTELDLRAE--------HLSQLKNLT 302

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            +NL    IG  G   L  L NL  L L    +G+     L  L NL  ++L +  I D 
Sbjct: 303 QINLCLNQIGPNGAERLCELTNLTQLNLRSNLIGAIKAESLCKLENLTQLDLGYNRIEDD 362

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
             ++L+ L  L  L+L   QI   G  +L+ LT LTHLDL G  I D GA +L   K L 
Sbjct: 363 GAQRLSKLKKLTQLDLSGNQIGSIGAQSLSELTNLTHLDLNGNGIED-GAQHLSKLKKLT 421

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L +    + D G K++ +L+ LT L+L  N  + D   E +S L  +  L++ ++ I +
Sbjct: 422 RLGLNDNRIGDDGAKYLSELNKLTHLSLDNN-GIGDTGAECLSKLKNITYLSLDDNEIET 480

Query: 460 AGLRHL 465
           AG +HL
Sbjct: 481 AGKKHL 486



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 125/364 (34%), Positives = 188/364 (51%), Gaps = 14/364 (3%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++L  +++ + G  H+   ++L +LD  F   I   G + L  L+NLT L+   N
Sbjct: 139 TNLKKLNLGHNEIGNDGAKHVSSLTHLTALDL-FDNGIGPNGAQRLSSLTNLTQLNLG-N 196

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKP 175
           N I   G +  + L NL +L+L R T++   G+ +L+GL KL  L++   N I    +  
Sbjct: 197 NEIGDAGAEHISSLTNLTQLNL-RITKLGANGVKSLRGLKKLTELDLSG-NQIGYEGVNN 254

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           LS L NLK L +  +++T  G   L GL+ LT L+L          + LS L +L  +NL
Sbjct: 255 LSELKNLKKLNLGNNRITGDGAERLCGLENLTELDLRA--------EHLSQLKNLTQINL 306

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
              Q+  +G E+  ++ +L  LNL  N I       L  L NL  L+L    I D+G   
Sbjct: 307 CLNQIGPNGAERLCELTNLTQLNLRSNLIGAIKAESLCKLENLTQLDLGYNRIEDDGAQR 366

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           L+ L  L  L+LS  Q+GS G + LS LTNL  ++L+  GI DG+ + L+ L  L  L L
Sbjct: 367 LSKLKKLTQLDLSGNQIGSIGAQSLSELTNLTHLDLNGNGIEDGA-QHLSKLKKLTRLGL 425

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
           +  +I D G   L+ L  LTHL L    I D+GA  L   KN+  L +    +  AG KH
Sbjct: 426 NDNRIGDDGAKYLSELNKLTHLSLDNNGIGDTGAECLSKLKNITYLSLDDNEIETAGKKH 485

Query: 416 IKDL 419
           ++ L
Sbjct: 486 LRKL 489



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 164/363 (45%), Gaps = 47/363 (12%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
           L+ L LG     ND    V  S  + L ++DL  + +  +G   L   +NL  L+     
Sbjct: 141 LKKLNLGHNEIGNDGAKHV--SSLTHLTALDLFDNGIGPNGAQRLSSLTNLTQLNLGNN- 197

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           +I D G EH+  L+NLT L+ R    + A G+K+  GL  L +LDL      + G+ NL 
Sbjct: 198 EIGDAGAEHISSLTNLTQLNLRIT-KLGANGVKSLRGLKKLTELDLSGNQIGYEGVNNLS 256

Query: 153 GLMKLESLNI-----------KWC--NCITDSDMKP--LSGLTNLKSLQISCSKVTDSGI 197
            L  L+ LN+           + C    +T+ D++   LS L NL  + +  +++  +G 
Sbjct: 257 ELKNLKKLNLGNNRITGDGAERLCGLENLTELDLRAEHLSQLKNLTQINLCLNQIGPNGA 316

Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
             L  L  LT LNL    + A   +SL  L +L  L+L   ++ DDG ++ SK+  L  L
Sbjct: 317 ERLCELTNLTQLNLRSNLIGAIKAESLCKLENLTQLDLGYNRIEDDGAQRLSKLKKLTQL 376

Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCG-----------------------IGDEGLV 294
           +L  N+I       L  LTNL  L+L+  G                       IGD+G  
Sbjct: 377 DLSGNQIGSIGAQSLSELTNLTHLDLNGNGIEDGAQHLSKLKKLTRLGLNDNRIGDDGAK 436

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG---SLRKLA--GLSS 349
            L+ L  L  L L +  +G +G   LS L N+  ++L    I       LRKL   GL S
Sbjct: 437 YLSELNKLTHLSLDNNGIGDTGAECLSKLKNITYLSLDDNEIETAGKKHLRKLIRCGLCS 496

Query: 350 LKS 352
           +++
Sbjct: 497 IRT 499


>gi|87311782|ref|ZP_01093896.1| hypothetical protein DSM3645_04405 [Blastopirellula marina DSM
           3645]
 gi|87285456|gb|EAQ77376.1| hypothetical protein DSM3645_04405 [Blastopirellula marina DSM
           3645]
          Length = 427

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 165/328 (50%), Gaps = 26/328 (7%)

Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
             +D  ++PLS L ++K L++  + VTD  I  L  ++ L   +     ++ A ++ LSA
Sbjct: 70  SFSDEQLEPLSKLKHVKILKVYGADVTDKTIDNLLQMKDLRDFSAANTTISDAGIEKLSA 129

Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
           L  L  L L R  +S+   E   ++  L+ L+L +++ITD  +  +  + N+E L L+  
Sbjct: 130 LKDLSVLQLRRTNISNKSLESMLQLPKLRYLDLRYDDITDAGMEIVAKMPNMEVLRLEGA 189

Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
            +GDEGL +LTGL  LK L +  T V  +G + ++ LTNLE++  + T ++   +  LA 
Sbjct: 190 IVGDEGLAHLTGLSKLKFLNVRGTNVTDAGFKSIANLTNLETLETNGTALTTEGMEYLAP 249

Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT--------------------- 385
           L+ +K+L L   Q+ D G   L  +  L +L L   R+                      
Sbjct: 250 LTKVKTLELMRAQVKDDGFVHLKEMKQLQNLMLRQTRVAGAGMENLIGIDTLKSLDVSET 309

Query: 386 ---DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
              D G  ++  FKNL  L +    +T  G+ HIKDL+++  L L     +TD +LE + 
Sbjct: 310 PFGDDGLIHVGKFKNLEKLNLWFTKVTPDGLPHIKDLTNMKTLILDYQ-GITDDSLENLV 368

Query: 443 GLTGLVSLNVS-NSRITSAGLRHLNHAR 469
           G+  L +L++  N  IT+  +++L   +
Sbjct: 369 GMQKLQTLSLKDNDMITNESIKYLKQLK 396



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/320 (30%), Positives = 157/320 (49%), Gaps = 52/320 (16%)

Query: 66  GSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRRNNA------ 118
           G+DVTD  + +L    +L+  DF+     ISD G+E L  L +L+ L  RR N       
Sbjct: 92  GADVTDKTIDNLLQMKDLR--DFSAANTTISDAGIEKLSALKDLSVLQLRRTNISNKSLE 149

Query: 119 -----------------ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
                            IT  GM+  A + N+  L LE       GL +L GL KL+ LN
Sbjct: 150 SMLQLPKLRYLDLRYDDITDAGMEIVAKMPNMEVLRLEGAIVGDEGLAHLTGLSKLKFLN 209

Query: 162 IKWCNCITDSDMKPLSGLTNL------------------------KSLQISCSKVTDSGI 197
           ++  N +TD+  K ++ LTNL                        K+L++  ++V D G 
Sbjct: 210 VRGTN-VTDAGFKSIANLTNLETLETNGTALTTEGMEYLAPLTKVKTLELMRAQVKDDGF 268

Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
            +LK +++L  L L    V  A +++L  + +L  L+++     DDG     K  +L+ L
Sbjct: 269 VHLKEMKQLQNLMLRQTRVAGAGMENLIGIDTLKSLDVSETPFGDDGLIHVGKFKNLEKL 328

Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSG 316
           NL F ++T + L H+K LTN+++L LD  GI D+ L NL G+  L+ L L D   + +  
Sbjct: 329 NLWFTKVTPDGLPHIKDLTNMKTLILDYQGITDDSLENLVGMQKLQTLSLKDNDMITNES 388

Query: 317 LRHLSGLTNLESINLSFTGI 336
           +++L  L  L+ I+++FT I
Sbjct: 389 IKYLKQLKGLKKISITFTQI 408



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 170/344 (49%), Gaps = 26/344 (7%)

Query: 150 NLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
            L+ L KL+ + I   +   +TD  +  L  + +L+    + + ++D+GI  L  L+ L+
Sbjct: 75  QLEPLSKLKHVKILKVYGADVTDKTIDNLLQMKDLRDFSAANTTISDAGIEKLSALKDLS 134

Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
           +L L    ++   L+S+  L  L YL+L    ++D G E  +K+ +++VL L    + DE
Sbjct: 135 VLQLRRTNISNKSLESMLQLPKLRYLDLRYDDITDAGMEIVAKMPNMEVLRLEGAIVGDE 194

Query: 268 CLVHLKGL------------------------TNLESLNLDSCGIGDEGLVNLTGLCNLK 303
            L HL GL                        TNLE+L  +   +  EG+  L  L  +K
Sbjct: 195 GLAHLTGLSKLKFLNVRGTNVTDAGFKSIANLTNLETLETNGTALTTEGMEYLAPLTKVK 254

Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
            LEL   QV   G  HL  +  L+++ L  T ++   +  L G+ +LKSL++      D 
Sbjct: 255 TLELMRAQVKDDGFVHLKEMKQLQNLMLRQTRVAGAGMENLIGIDTLKSLDVSETPFGDD 314

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
           GL  +     L  L+L+  ++T  G  ++++  N+++L +   G+TD  ++++  +  L 
Sbjct: 315 GLIHVGKFKNLEKLNLWFTKVTPDGLPHIKDLTNMKTLILDYQGITDDSLENLVGMQKLQ 374

Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNH 467
            L+L  N  +T+++++ +  L GL  ++++ ++I S G+  L  
Sbjct: 375 TLSLKDNDMITNESIKYLKQLKGLKKISITFTQIDSRGVAELKK 418



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 122/238 (51%), Gaps = 1/238 (0%)

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
           G +   +++    SD+  E  SK+  +K+L +   ++TD+ + +L  + +L   +  +  
Sbjct: 59  GVVTVADMSVASFSDEQLEPLSKLKHVKILKVYGADVTDKTIDNLLQMKDLRDFSAANTT 118

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           I D G+  L+ L +L  L+L  T + +  L  +  L  L  ++L +  I+D  +  +A +
Sbjct: 119 ISDAGIEKLSALKDLSVLQLRRTNISNKSLESMLQLPKLRYLDLRYDDITDAGMEIVAKM 178

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
            +++ L L+   + D GLA LT L+ L  L++ G  +TD+G   + N  NL +LE  G  
Sbjct: 179 PNMEVLRLEGAIVGDEGLAHLTGLSKLKFLNVRGTNVTDAGFKSIANLTNLETLETNGTA 238

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           LT  G++++  L+ +  L L +   + D     +  +  L +L +  +R+  AG+ +L
Sbjct: 239 LTTEGMEYLAPLTKVKTLELMR-AQVKDDGFVHLKEMKQLQNLMLRQTRVAGAGMENL 295



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 130/258 (50%), Gaps = 5/258 (1%)

Query: 40  QYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL 99
           +Y  + D  M+++A    ++  + L G+ V D GL HL   S L+ L+      ++D G 
Sbjct: 163 RYDDITDAGMEIVAKM-PNMEVLRLEGAIVGDEGLAHLTGLSKLKFLNVR-GTNVTDAGF 220

Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
           + +  L+NL +L      A+T +GM+  A L  +  L+L R      G V+LK + +L++
Sbjct: 221 KSIANLTNLETLE-TNGTALTTEGMEYLAPLTKVKTLELMRAQVKDDGFVHLKEMKQLQN 279

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
           L ++    +  + M+ L G+  LKSL +S +   D G+ ++   + L  LNL    VT  
Sbjct: 280 LMLRQTR-VAGAGMENLIGIDTLKSLDVSETPFGDDGLIHVGKFKNLEKLNLWFTKVTPD 338

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNL 278
            L  +  L ++  L L+   ++DD  E    +  L+ L+L  N+ IT+E + +LK L  L
Sbjct: 339 GLPHIKDLTNMKTLILDYQGITDDSLENLVGMQKLQTLSLKDNDMITNESIKYLKQLKGL 398

Query: 279 ESLNLDSCGIGDEGLVNL 296
           + +++    I   G+  L
Sbjct: 399 KKISITFTQIDSRGVAEL 416


>gi|290998894|ref|XP_002682015.1| predicted protein [Naegleria gruberi]
 gi|284095641|gb|EFC49271.1| predicted protein [Naegleria gruberi]
          Length = 413

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 156/293 (53%), Gaps = 3/293 (1%)

Query: 160 LNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
           +N+K    + DS   +K +S +  L SL I  +++   G+ Y+  +++LT LN+    ++
Sbjct: 111 VNLKVSRWLLDSVDQLKFISEMKQLTSLDIYSNRIGVEGVKYISEMKQLTSLNISEIEIS 170

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
                 +S +  L  L ++  ++ D+G +  S++  L  LN+G NEI+DE   H+  +  
Sbjct: 171 DEGAKYISEMKQLTSLYIHNNEIGDEGSKHISEMKQLTSLNIGCNEISDEGAKHISEMNQ 230

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           L SL++    IGDEG   ++ +  L  L+++D ++G  G +++S +  L S+N+ F  I 
Sbjct: 231 LISLSIGYNRIGDEGFKYISEMKQLTSLDITDDEIGDEGAKYISEMKQLTSLNIGFNEIG 290

Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
           D   + ++ L  L SL++   +I+D G   ++ +  L  L +    I+D GA Y+   K 
Sbjct: 291 DEGAKYISELKQLTSLDISETEISDEGAKYISEMKQLIWLTIGYNEISDKGAKYISELKQ 350

Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
           L SL+I    + + G K+I +++ L  LN+  N  + D+  + IS +  L SL
Sbjct: 351 LTSLDITDNKIGNEGAKYISEMNQLISLNIGYN-RIGDEGAKYISEMKQLTSL 402



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 150/284 (52%), Gaps = 8/284 (2%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+   L S+D+  + +   G+ ++ +   L SL+ +  I+ISD G +++  +  LTSL +
Sbjct: 130 SEMKQLTSLDIYSNRIGVEGVKYISEMKQLTSLNIS-EIEISDEGAKYISEMKQLTSL-Y 187

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSD 172
             NN I  +G K  + +  L  L++  C  I   G  ++  + +L SL+I + N I D  
Sbjct: 188 IHNNEIGDEGSKHISEMKQLTSLNI-GCNEISDEGAKHISEMNQLISLSIGY-NRIGDEG 245

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
            K +S +  L SL I+  ++ D G  Y+  +++LT LN+    +       +S L  L  
Sbjct: 246 FKYISEMKQLTSLDITDDEIGDEGAKYISEMKQLTSLNIGFNEIGDEGAKYISELKQLTS 305

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           L+++  ++SD+G +  S++  L  L +G+NEI+D+   ++  L  L SL++    IG+EG
Sbjct: 306 LDISETEISDEGAKYISEMKQLIWLTIGYNEISDKGAKYISELKQLTSLDITDNKIGNEG 365

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLS---GLTNLESINLSF 333
              ++ +  L  L +   ++G  G +++S    LT+L  I+L F
Sbjct: 366 AKYISEMNQLISLNIGYNRIGDEGAKYISEMKQLTSLRQISLGF 409



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 1/103 (0%)

Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
           L  ++ +  LT LD++  RI   G  Y+   K L SL I    ++D G K+I ++  LT 
Sbjct: 126 LKFISEMKQLTSLDIYSNRIGVEGVKYISEMKQLTSLNISEIEISDEGAKYISEMKQLTS 185

Query: 425 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNH 467
           L +  N  + D+  + IS +  L SLN+  + I+  G +H++ 
Sbjct: 186 LYI-HNNEIGDEGSKHISEMKQLTSLNIGCNEISDEGAKHISE 227


>gi|397646482|gb|EJK77289.1| hypothetical protein THAOC_00890 [Thalassiosira oceanica]
          Length = 702

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 117/354 (33%), Positives = 186/354 (52%), Gaps = 30/354 (8%)

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
           + IT +GM AF+    L  + L  C R+    +VN+     L SLN+  C C+TD  ++ 
Sbjct: 293 HGITGKGMLAFSRSPRLHTISLANCRRLTDEAVVNISHCTSLTSLNVGGCRCLTDRSLEA 352

Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           +SGL +L+ L +S C  +TD G+ +L  L  L  L+L       A      ++ +L  L 
Sbjct: 353 MSGLLDLRRLDLSQCDLITDDGLIFLGELDLLEELSLGNKSCGMAIQQRNRSI-ALKTLR 411

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-LKGLTNLESLNLDSC-GIGDEG 292
           L RC +++DG +   ++ SL+ L++    ++   L   L+ LTNL SL+   C GI    
Sbjct: 412 LARCAITNDGLDYLEQLQSLEDLDINGCSLSSTALGESLEKLTNLNSLDASHCPGI---- 467

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
                 L  L+ L L+DTQ+  + +  ++ L  L S++L +  +S   LR LA L  L S
Sbjct: 468 ------LPGLEVLNLADTQISDNAMSKVAKLAGLRSLSLFYCNVSSRGLRHLASLEKLDS 521

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
           LNLD+R I D G                  R+TD G +Y+   K L +L++ GGG+ D G
Sbjct: 522 LNLDSRDIGDEGRPN---------------RVTDLGCSYIAKIKTLTTLQLAGGGVGDLG 566

Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
             HI  + +L  LNLSQN ++T++    ++ L+ L +LN+SN+R+TS  L+  +
Sbjct: 567 CAHIATIDALESLNLSQNESITNRGAASLAALSNLRALNLSNTRVTSNALKFFH 620



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 149/324 (45%), Gaps = 48/324 (14%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM---- 124
           +TD  ++++  C++L SL+   C  ++D  LE + GL +L  L   + + IT  G+    
Sbjct: 320 LTDEAVVNISHCTSLTSLNVGGCRCLTDRSLEAMSGLLDLRRLDLSQCDLITDDGLIFLG 379

Query: 125 -----------KAFAGL--------INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
                          G+        I L  L L RC   + GL  L+ L  LE L+I  C
Sbjct: 380 ELDLLEELSLGNKSCGMAIQQRNRSIALKTLRLARCAITNDGLDYLEQLQSLEDLDINGC 439

Query: 166 NCITDSDMKPLSGLTNLKSLQIS-C--------------SKVTDSGIAYLKGLQKLTLLN 210
           +  + +  + L  LTNL SL  S C              ++++D+ ++ +  L  L  L+
Sbjct: 440 SLSSTALGESLEKLTNLNSLDASHCPGILPGLEVLNLADTQISDNAMSKVAKLAGLRSLS 499

Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG---------CEKFSKIGSLKVLNLGF 261
           L  C V++  L  L++L  L  LNL+   + D+G         C   +KI +L  L L  
Sbjct: 500 LFYCNVSSRGLRHLASLEKLDSLNLDSRDIGDEGRPNRVTDLGCSYIAKIKTLTTLQLAG 559

Query: 262 NEITDECLVHLKGLTNLESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
             + D    H+  +  LESLNL  +  I + G  +L  L NL+ L LS+T+V S+ L+  
Sbjct: 560 GGVGDLGCAHIATIDALESLNLSQNESITNRGAASLAALSNLRALNLSNTRVTSNALKFF 619

Query: 321 SGLTNLESINLSFTGISDGSLRKL 344
            GL+ L+S+ L    + D  +  L
Sbjct: 620 HGLSKLQSLALYGCIMEDSPIESL 643



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 9/171 (5%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR------- 114
           ++L+ + ++D+ +  +   + L+SL   +C  +S  GL HL  L  L SL+         
Sbjct: 474 LNLADTQISDNAMSKVAKLAGLRSLSLFYC-NVSSRGLRHLASLEKLDSLNLDSRDIGDE 532

Query: 115 -RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
            R N +T  G    A +  L  L L        G  ++  +  LESLN+     IT+   
Sbjct: 533 GRPNRVTDLGCSYIAKIKTLTTLQLAGGGVGDLGCAHIATIDALESLNLSQNESITNRGA 592

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
             L+ L+NL++L +S ++VT + + +  GL KL  L L GC +  + ++SL
Sbjct: 593 ASLAALSNLRALNLSNTRVTSNALKFFHGLSKLQSLALYGCIMEDSPIESL 643



 Score = 38.1 bits (87), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 29/56 (51%)

Query: 2   LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGS 57
           LP+D+  +I   L     L   ++ A  +C L  LCL    GVND+++  + S GS
Sbjct: 47  LPQDVVDRIVKSLTAHAALNCTTMRALSNCELGTLCLADARGVNDEFLMALCSSGS 102


>gi|46447141|ref|YP_008506.1| hypothetical protein pc1507 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400782|emb|CAF24231.1| hypothetical protein pc1507 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 623

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 176/349 (50%), Gaps = 36/349 (10%)

Query: 66  GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
            + +TD+ L+ LK C NL+ L    C  ++D GL HL  L  L  L       +T  G+ 
Sbjct: 275 NAHLTDAHLLALKTCKNLKVLYLKKCCNLTDAGLSHLSPLVALQHLELSDCPRLTDAGLA 334

Query: 126 AFAGLINLVKLDLERCTRI--------------------------HGGLVNLKGLMKLES 159
               L+ L  L+L  C+                            H GL +L  L+ L+ 
Sbjct: 335 HLTSLVALQYLNLSECSNFTDAGLAHLTPLLTLTHLNLSWCYNFTHAGLAHLTPLVALQH 394

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 217
           LN+  C  ITD+ +  LS L  L+ L +  CS +TD+G+A+L  L  L  L+L  C  +T
Sbjct: 395 LNLGHCRNITDAGLAHLSPLVALQHLNLGWCSNLTDAGLAHLSPLVALQHLDLGWCSNLT 454

Query: 218 AACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFN--EITDECLVHLKG 274
            A L  L++L +L +L+L+ C  L+D G    S + +L+ L+L  N   + D  L HL  
Sbjct: 455 DAGLAHLTSLVALQHLDLSWCYYLTDAGLAHLSPLVALQHLDLS-NCLSLKDAGLAHLTL 513

Query: 275 LTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS 332
           L  L+ LNL+ C  + D GL +LT L  L+ L+LS    +  +GL HL+ L  L+ +++S
Sbjct: 514 LVTLKYLNLNKCHNLTDAGLAHLTPLVALQHLDLSQCPNLTGTGLAHLNSLMALQHLDMS 573

Query: 333 F-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL 379
           +   ++D  L  L  L +L+ LNL    ++TD GLA L  L  L HLDL
Sbjct: 574 WCHNLTDAGLTHLTPLVNLRHLNLTKCPKLTDAGLAHLAPLVALEHLDL 622



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 132/355 (37%), Positives = 195/355 (54%), Gaps = 11/355 (3%)

Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCI 168
           +L+F  N  +T   + A     NL  L L++C  +   GL +L  L+ L+ L +  C  +
Sbjct: 269 ALNFSENAHLTDAHLLALKTCKNLKVLYLKKCCNLTDAGLSHLSPLVALQHLELSDCPRL 328

Query: 169 TDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSA 226
           TD+ +  L+ L  L+ L +S CS  TD+G+A+L  L  LT LNL  C   T A L  L+ 
Sbjct: 329 TDAGLAHLTSLVALQYLNLSECSNFTDAGLAHLTPLLTLTHLNLSWCYNFTHAGLAHLTP 388

Query: 227 LGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLD 284
           L +L +LNL  C+ ++D G    S + +L+ LNLG+ + +TD  L HL  L  L+ L+L 
Sbjct: 389 LVALQHLNLGHCRNITDAGLAHLSPLVALQHLNLGWCSNLTDAGLAHLSPLVALQHLDLG 448

Query: 285 SCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSL 341
            C  + D GL +LT L  L+ L+LS    +  +GL HLS L  L+ ++LS    + D  L
Sbjct: 449 WCSNLTDAGLAHLTSLVALQHLDLSWCYYLTDAGLAHLSPLVALQHLDLSNCLSLKDAGL 508

Query: 342 RKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLR 399
             L  L +LK LNL+    +TD GLA LT L  L HLDL     +T +G A+L +   L+
Sbjct: 509 AHLTLLVTLKYLNLNKCHNLTDAGLAHLTPLVALQHLDLSQCPNLTGTGLAHLNSLMALQ 568

Query: 400 SLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
            L++     LTDAG+ H+  L +L  LNL++   LTD  L  ++ L  L  L++S
Sbjct: 569 HLDMSWCHNLTDAGLTHLTPLVNLRHLNLTKCPKLTDAGLAHLAPLVALEHLDLS 623



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 116/321 (36%), Positives = 171/321 (53%), Gaps = 11/321 (3%)

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
           ++E+LN      +TD+ +  L    NLK L +  C  +TD+G+++L  L  L  L L  C
Sbjct: 266 EVEALNFSENAHLTDAHLLALKTCKNLKVLYLKKCCNLTDAGLSHLSPLVALQHLELSDC 325

Query: 215 P-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVH 271
           P +T A L  L++L +L YLNL+ C   +D G    + + +L  LNL +    T   L H
Sbjct: 326 PRLTDAGLAHLTSLVALQYLNLSECSNFTDAGLAHLTPLLTLTHLNLSWCYNFTHAGLAH 385

Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 329
           L  L  L+ LNL  C  I D GL +L+ L  L+ L L   + +  +GL HLS L  L+ +
Sbjct: 386 LTPLVALQHLNLGHCRNITDAGLAHLSPLVALQHLNLGWCSNLTDAGLAHLSPLVALQHL 445

Query: 330 NLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITD 386
           +L + + ++D  L  L  L +L+ L+L     +TD GLA L+ L  L HLDL     + D
Sbjct: 446 DLGWCSNLTDAGLAHLTSLVALQHLDLSWCYYLTDAGLAHLSPLVALQHLDLSNCLSLKD 505

Query: 387 SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
           +G A+L     L+ L +     LTDAG+ H+  L +L  L+LSQ  NLT   L  ++ L 
Sbjct: 506 AGLAHLTLLVTLKYLNLNKCHNLTDAGLAHLTPLVALQHLDLSQCPNLTGTGLAHLNSLM 565

Query: 446 GLVSLNVSN-SRITSAGLRHL 465
            L  L++S    +T AGL HL
Sbjct: 566 ALQHLDMSWCHNLTDAGLTHL 586



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 106/309 (34%), Positives = 166/309 (53%), Gaps = 9/309 (2%)

Query: 32  ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
           ALQ L L   P + D  +  + S   +L  ++LS  S+ TD+GL HL     L  L+ ++
Sbjct: 316 ALQHLELSDCPRLTDAGLAHLTSL-VALQYLNLSECSNFTDAGLAHLTPLLTLTHLNLSW 374

Query: 91  CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
           C   +  GL HL  L  L  L+      IT  G+   + L+ L  L+L  C+ +   GL 
Sbjct: 375 CYNFTHAGLAHLTPLVALQHLNLGHCRNITDAGLAHLSPLVALQHLNLGWCSNLTDAGLA 434

Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTL 208
           +L  L+ L+ L++ WC+ +TD+ +  L+ L  L+ L +S C  +TD+G+A+L  L  L  
Sbjct: 435 HLSPLVALQHLDLGWCSNLTDAGLAHLTSLVALQHLDLSWCYYLTDAGLAHLSPLVALQH 494

Query: 209 LNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEIT 265
           L+L  C  +  A L  L+ L +L YLNLN+C  L+D G    + + +L+ L+L     +T
Sbjct: 495 LDLSNCLSLKDAGLAHLTLLVTLKYLNLNKCHNLTDAGLAHLTPLVALQHLDLSQCPNLT 554

Query: 266 DECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGL 323
              L HL  L  L+ L++  C  + D GL +LT L NL+ L L+   ++  +GL HL+ L
Sbjct: 555 GTGLAHLNSLMALQHLDMSWCHNLTDAGLTHLTPLVNLRHLNLTKCPKLTDAGLAHLAPL 614

Query: 324 TNLESINLS 332
             LE ++LS
Sbjct: 615 VALEHLDLS 623


>gi|149174696|ref|ZP_01853321.1| hypothetical protein PM8797T_26210 [Planctomyces maris DSM 8797]
 gi|148846390|gb|EDL60728.1| hypothetical protein PM8797T_26210 [Planctomyces maris DSM 8797]
          Length = 460

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 116/375 (30%), Positives = 183/375 (48%), Gaps = 29/375 (7%)

Query: 95  SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
            D  L+HL GL +L  L     N  T    +       L  L LE       G+ NL  L
Sbjct: 106 QDADLKHLAGLPSLERLILWGPN-FTDVSTEEIGKKNKLWFLSLESTAIGDEGVKNLSDL 164

Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEG 213
             L+ L+++  N IT+  +K ++    LK L +  +K + D G+ ++KG++ L +L ++ 
Sbjct: 165 QGLQVLSLRATN-ITNDALKVVAAFPELKDLDLRFNKEINDEGMPHIKGMKNLKVLKVQA 223

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
             VT   +  ++AL +L  LN     +SD+  E   K  +L  L L   EI+DE + +LK
Sbjct: 224 TQVTDEGMKDIAALPNLQRLNTWGRNISDETLE-LLKDKNLVSLELDDTEISDEGMKYLK 282

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
            +TN+ESL+L    +G+ G+ N+  +  L+ L L DT V   G+++LSGLT+        
Sbjct: 283 DMTNMESLHLRRDFVGNPGIENIQNMKKLQTLHLRDTVVTDEGMKYLSGLTD-------- 334

Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                           L  L+LD   I D GL  +  L  LT L L+G   TD G   + 
Sbjct: 335 ----------------LTYLDLDESMIGDQGLEQIKDLKKLTRLGLWGTETTDQGLKVIS 378

Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
            F  L  L + G  +TDAG+K +  L  L  LNLS+   ++D+ L+ ++ L  L  L +S
Sbjct: 379 GFTELNRLNLEGTPITDAGLKQLLPLKKLEYLNLSK-TEISDEGLKTLAALKNLKELQLS 437

Query: 454 NSRITSAGLRHLNHA 468
            +++T  G++    A
Sbjct: 438 FTQVTDDGVKQFEAA 452



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 183/364 (50%), Gaps = 3/364 (0%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S    +L +DL G++  D+ L HL    +L+ L   +    +D   E +   + L  LS 
Sbjct: 90  SDDGRVLILDLKGTNAQDADLKHLAGLPSLERLIL-WGPNFTDVSTEEIGKKNKLWFLSL 148

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
             + AI  +G+K  + L  L  L L      +  L  +    +L+ L++++   I D  M
Sbjct: 149 -ESTAIGDEGVKNLSDLQGLQVLSLRATNITNDALKVVAAFPELKDLDLRFNKEINDEGM 207

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
             + G+ NLK L++  ++VTD G+  +  L  L  LN  G  ++   L+ L    +L  L
Sbjct: 208 PHIKGMKNLKVLKVQATQVTDEGMKDIAALPNLQRLNTWGRNISDETLELLKD-KNLVSL 266

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
            L+  ++SD+G +    + +++ L+L  + + +  + +++ +  L++L+L    + DEG+
Sbjct: 267 ELDDTEISDEGMKYLKDMTNMESLHLRRDFVGNPGIENIQNMKKLQTLHLRDTVVTDEGM 326

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
             L+GL +L  L+L ++ +G  GL  +  L  L  + L  T  +D  L+ ++G + L  L
Sbjct: 327 KYLSGLTDLTYLDLDESMIGDQGLEQIKDLKKLTRLGLWGTETTDQGLKVISGFTELNRL 386

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
           NL+   ITD GL  L  L  L +L+L    I+D G   L   KNL+ L++    +TD GV
Sbjct: 387 NLEGTPITDAGLKQLLPLKKLEYLNLSKTEISDEGLKTLAALKNLKELQLSFTQVTDDGV 446

Query: 414 KHIK 417
           K  +
Sbjct: 447 KQFE 450



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/294 (32%), Positives = 151/294 (51%), Gaps = 9/294 (3%)

Query: 55  QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
           QG  +LS  L  +++T+  L  +     L+ LD  F  +I+D G+ H++G+ NL  L  +
Sbjct: 165 QGLQVLS--LRATNITNDALKVVAAFPELKDLDLRFNKEINDEGMPHIKGMKNLKVLKVQ 222

Query: 115 RNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
               +T +GMK  A L NL +L+      +     L+  K L+ LE  + +    I+D  
Sbjct: 223 ATQ-VTDEGMKDIAALPNLQRLNTWGRNISDETLELLKDKNLVSLELDDTE----ISDEG 277

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           MK L  +TN++SL +    V + GI  ++ ++KL  L+L    VT   +  LS L  L Y
Sbjct: 278 MKYLKDMTNMESLHLRRDFVGNPGIENIQNMKKLQTLHLRDTVVTDEGMKYLSGLTDLTY 337

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           L+L+   + D G E+   +  L  L L   E TD+ L  + G T L  LNL+   I D G
Sbjct: 338 LDLDESMIGDQGLEQIKDLKKLTRLGLWGTETTDQGLKVISGFTELNRLNLEGTPITDAG 397

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
           L  L  L  L+ L LS T++   GL+ L+ L NL+ + LSFT ++D  +++   
Sbjct: 398 LKQLLPLKKLEYLNLSKTEISDEGLKTLAALKNLKELQLSFTQVTDDGVKQFEA 451



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 132/244 (54%), Gaps = 3/244 (1%)

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           +S  G +  L+L      D   +  + + SL+ L L     TD     +     L  L+L
Sbjct: 89  MSDDGRVLILDLKGTNAQDADLKHLAGLPSLERLILWGPNFTDVSTEEIGKKNKLWFLSL 148

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLR 342
           +S  IGDEG+ NL+ L  L+ L L  T + +  L+ ++    L+ ++L F   I+D  + 
Sbjct: 149 ESTAIGDEGVKNLSDLQGLQVLSLRATNITNDALKVVAAFPELKDLDLRFNKEINDEGMP 208

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
            + G+ +LK L + A Q+TD G+  + +L  L  L+ +G  I+D     L++ KNL SLE
Sbjct: 209 HIKGMKNLKVLKVQATQVTDEGMKDIAALPNLQRLNTWGRNISDETLELLKD-KNLVSLE 267

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
           +    ++D G+K++KD++++  L+L ++  + +  +E I  +  L +L++ ++ +T  G+
Sbjct: 268 LDDTEISDEGMKYLKDMTNMESLHLRRDF-VGNPGIENIQNMKKLQTLHLRDTVVTDEGM 326

Query: 463 RHLN 466
           ++L+
Sbjct: 327 KYLS 330


>gi|290982526|ref|XP_002673981.1| predicted protein [Naegleria gruberi]
 gi|284087568|gb|EFC41237.1| predicted protein [Naegleria gruberi]
          Length = 363

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 191/366 (52%), Gaps = 11/366 (3%)

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIK 163
           +  LTSL+   NN I+ +G K  + +  L  L++    RI G G   +  + +L SLNI 
Sbjct: 1   MKQLTSLNVS-NNQISGKGAKYISEMKQLTSLNISN-NRIGGKGAKYISEMKQLTSLNI- 57

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
           + N I+D   K +S +  L SL IS +++   G  ++  +++LT LN+    ++      
Sbjct: 58  FNNRISDEGAKYISEMKQLISLDISYNQIGAEGAKFISEMKQLTSLNISYNEISDEGAKY 117

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           +S +  L  LN++   +S+ G +  S++  L  LN+  N+I+ +   ++  +  L SLN+
Sbjct: 118 ISEMKQLTSLNISYNDISE-GAKPISEMKQLTSLNVSNNQISGKGAKYISEMKQLTSLNI 176

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
               I  +G   +  +  L  L++S+ Q+   G + LS +  L S+N+S   IS    + 
Sbjct: 177 SDNQISGKGAKYIGEMKQLTSLDISNNQISDEGAKFLSEMKQLISLNVSNNQISGKEAKF 236

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           ++ +  L SLN+   QI+D     ++ +  LT LD+F   I+D GA Y+   K+L SL+I
Sbjct: 237 MSEMKQLTSLNISNNQISDERAKYISEMKQLTSLDIFNNLISDEGAKYISEMKHLTSLDI 296

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
               ++     HI ++  LT LN+S N  + D+  + IS +  L SL++S +RI   G +
Sbjct: 297 SYNEIS-----HISEMKQLTSLNISFN-QINDEGAKSISEMKQLTSLDMSYNRIGGEGAK 350

Query: 464 HLNHAR 469
           +++  +
Sbjct: 351 YISEMK 356



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 178/348 (51%), Gaps = 9/348 (2%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+   L S+++S + +   G  ++ +   L SL+  F  +ISD G +++  +  L SL  
Sbjct: 23  SEMKQLTSLNISNNRIGGKGAKYISEMKQLTSLNI-FNNRISDEGAKYISEMKQLISLDI 81

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
             N  I A+G K  + +  L  L++        G   +  + +L SLNI + N I++   
Sbjct: 82  SYN-QIGAEGAKFISEMKQLTSLNISYNEISDEGAKYISEMKQLTSLNISY-NDISEG-A 138

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           KP+S +  L SL +S ++++  G  Y+  +++LT LN+    ++      +  +  L  L
Sbjct: 139 KPISEMKQLTSLNVSNNQISGKGAKYISEMKQLTSLNISDNQISGKGAKYIGEMKQLTSL 198

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +++  Q+SD+G +  S++  L  LN+  N+I+ +    +  +  L SLN+ +  I DE  
Sbjct: 199 DISNNQISDEGAKFLSEMKQLISLNVSNNQISGKEAKFMSEMKQLTSLNISNNQISDERA 258

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
             ++ +  L  L++ +  +   G +++S + +L S+++S+  IS      ++ +  L SL
Sbjct: 259 KYISEMKQLTSLDIFNNLISDEGAKYISEMKHLTSLDISYNEISH-----ISEMKQLTSL 313

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
           N+   QI D G  +++ +  LT LD+   RI   GA Y+   K+L SL
Sbjct: 314 NISFNQINDEGAKSISEMKQLTSLDMSYNRIGGEGAKYISEMKHLTSL 361


>gi|296124076|ref|YP_003631854.1| ribonuclease inhibitor [Planctomyces limnophilus DSM 3776]
 gi|296016416|gb|ADG69655.1| Leucine-rich repeat, ribonuclease inhibitor subtype [Planctomyces
           limnophilus DSM 3776]
          Length = 474

 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 102/317 (32%), Positives = 150/317 (47%), Gaps = 25/317 (7%)

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           I D D+  ++ LT+L  L++   K+TD G+  LK L  L +L LE   +T    + L++ 
Sbjct: 117 IGDDDLALVAKLTHLTELRLEGPKITDKGVLLLKPLTNLVVLGLENTQLTDTGAEVLASF 176

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT----------- 276
            +L  L L R  + D      SK+  L+ L+L F  +TDE +  L GL+           
Sbjct: 177 PNLEVLYLRRTNILDPALAHLSKLAKLRALDLRFTNVTDEGMKSLAGLSQLRDLRLQATR 236

Query: 277 -------------NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
                        NL+ LN+      D GL  L     L+ LEL DT++ S GL  L GL
Sbjct: 237 VTDASLPLIAKLPNLQKLNVWGENFTDAGLSQLADTKTLRILELDDTRLTSEGLIKLGGL 296

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
           TNLE +++  T I +  L  +  +  ++ L L     TD GL A++ L  L  LDL    
Sbjct: 297 TNLEELHVRRTRIKNDGLAVVKNMPKMRRLLLRDTLCTDPGLEAVSGLKNLVELDLTEGI 356

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
             D G   L    +L  L +     +DAG++ I+DL  L  LNL Q   +TD   + I+G
Sbjct: 357 FGDDGVKNLAGLTSLEDLSLWATTTSDAGIESIRDLKKLKALNLEQ-TRITDAAAKTIAG 415

Query: 444 LTGLVSLNVSNSRITSA 460
              L  LN+S + +T A
Sbjct: 416 FGELTELNLSQTEVTDA 432



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/319 (31%), Positives = 159/319 (49%), Gaps = 26/319 (8%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           +I+D G+  L+ L+NL  L    N  +T  G +  A   NL  L L R   +   L +L 
Sbjct: 140 KITDKGVLLLKPLTNLVVLGLE-NTQLTDTGAEVLASFPNLEVLYLRRTNILDPALAHLS 198

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
            L KL +L++++ N +TD  MK L+GL+ L+ L++  ++VTD+ +  +  L  L  LN+ 
Sbjct: 199 KLAKLRALDLRFTN-VTDEGMKSLAGLSQLRDLRLQATRVTDASLPLIAKLPNLQKLNVW 257

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
           G                           +D G  + +   +L++L L    +T E L+ L
Sbjct: 258 GE------------------------NFTDAGLSQLADTKTLRILELDDTRLTSEGLIKL 293

Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
            GLTNLE L++    I ++GL  +  +  ++ L L DT     GL  +SGL NL  ++L+
Sbjct: 294 GGLTNLEELHVRRTRIKNDGLAVVKNMPKMRRLLLRDTLCTDPGLEAVSGLKNLVELDLT 353

Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
                D  ++ LAGL+SL+ L+L A   +D G+ ++  L  L  L+L   RITD+ A  +
Sbjct: 354 EGIFGDDGVKNLAGLTSLEDLSLWATTTSDAGIESIRDLKKLKALNLEQTRITDAAAKTI 413

Query: 393 RNFKNLRSLEICGGGLTDA 411
             F  L  L +    +TDA
Sbjct: 414 AGFGELTELNLSQTEVTDA 432



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 115/227 (50%), Gaps = 9/227 (3%)

Query: 20  LTEVSLEAFRDCA----LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLI 75
            T V+ E  +  A    L+DL L Q   V D  + +IA +  +L  +++ G + TD+GL 
Sbjct: 210 FTNVTDEGMKSLAGLSQLRDLRL-QATRVTDASLPLIA-KLPNLQKLNVWGENFTDAGLS 267

Query: 76  HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
            L D   L+ L+ +   +++  GL  L GL+NL  L  RR   I   G+     +  + +
Sbjct: 268 QLADTKTLRILELDDT-RLTSEGLIKLGGLTNLEELHVRRTR-IKNDGLAVVKNMPKMRR 325

Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
           L L        GL  + GL  L  L++       D  +K L+GLT+L+ L +  +  +D+
Sbjct: 326 LLLRDTLCTDPGLEAVSGLKNLVELDLTE-GIFGDDGVKNLAGLTSLEDLSLWATTTSDA 384

Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           GI  ++ L+KL  LNLE   +T A   +++  G L  LNL++ +++D
Sbjct: 385 GIESIRDLKKLKALNLEQTRITDAAAKTIAGFGELTELNLSQTEVTD 431



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 108/236 (45%), Gaps = 25/236 (10%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+ + L ++DL  ++VTD G+  L   S L+ L      +++D  L  +  L NL  L+ 
Sbjct: 198 SKLAKLRALDLRFTNVTDEGMKSLAGLSQLRDLRLQ-ATRVTDASLPLIAKLPNLQKLNV 256

Query: 114 RRNN-----------------------AITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
              N                        +T++G+    GL NL +L + R    + GL  
Sbjct: 257 WGENFTDAGLSQLADTKTLRILELDDTRLTSEGLIKLGGLTNLEELHVRRTRIKNDGLAV 316

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
           +K + K+  L ++   C TD  ++ +SGL NL  L ++     D G+  L GL  L  L+
Sbjct: 317 VKNMPKMRRLLLRDTLC-TDPGLEAVSGLKNLVELDLTEGIFGDDGVKNLAGLTSLEDLS 375

Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
           L     + A ++S+  L  L  LNL + +++D   +  +  G L  LNL   E+TD
Sbjct: 376 LWATTTSDAGIESIRDLKKLKALNLEQTRITDAAAKTIAGFGELTELNLSQTEVTD 431



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 79/158 (50%), Gaps = 1/158 (0%)

Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
           ++T +G   L  ++ LT+L  + L    I+D  +  L  L++L  L L+  Q+TDTG   
Sbjct: 113 AETSIGDDDLALVAKLTHLTELRLEGPKITDKGVLLLKPLTNLVVLGLENTQLTDTGAEV 172

Query: 368 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
           L S   L  L L    I D   A+L     LR+L++    +TD G+K +  LS L  L L
Sbjct: 173 LASFPNLEVLYLRRTNILDPALAHLSKLAKLRALDLRFTNVTDEGMKSLAGLSQLRDLRL 232

Query: 428 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
            Q   +TD +L LI+ L  L  LNV     T AGL  L
Sbjct: 233 -QATRVTDASLPLIAKLPNLQKLNVWGENFTDAGLSQL 269


>gi|290979790|ref|XP_002672616.1| predicted protein [Naegleria gruberi]
 gi|284086194|gb|EFC39872.1| predicted protein [Naegleria gruberi]
          Length = 559

 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 198/394 (50%), Gaps = 10/394 (2%)

Query: 54  SQGSSLLSVDLSGSDVTDSG---LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
           S+   L S+++SG+ + D G   +  +K  + L   D   C++    G + +  +  LTS
Sbjct: 168 SEMKQLTSLNISGNRIGDEGAKLISEMKQLTLLNIADNRICVE----GAKSISEMKQLTS 223

Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
           LS   +N I   G K  + +  L  L++        G   +  + +L SL+I   N I  
Sbjct: 224 LSIS-DNEIGVVGAKLISEMNQLTLLNISNNEIGDEGAKFISEMKQLISLDIS-NNLIDI 281

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
              K +S +  L SL+I  +++ D G+ ++  +++LT L++ G  +      S+S +  L
Sbjct: 282 EGAKSISEMKQLTSLEIYYNEIGDEGVKFISKMEQLTSLDISGNQIGVGGAKSISEMKQL 341

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
            +L +   ++ D+G    S++  L  LN+ +N+I DE +  +  +  L SL++    IG 
Sbjct: 342 TFLQIFSNRIGDEGANSISEMKQLTSLNIYYNQIGDEGVKFISEMEQLTSLDIGGNQIGV 401

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
            G  +++ +  L  L++   ++G  G++ +S +  L S+N+S   I D   + ++ +  L
Sbjct: 402 GGAKSISEMKQLTFLQIFSNRIGDEGVKFISEMKQLTSLNISGNRIGDEGAKSISEMKQL 461

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
             L + + +I D G+  ++ +  LT L ++  RI D G   +   K L SL I G  + D
Sbjct: 462 TLLYISSNEIGDEGVKFISEMKQLTLLQIYSNRIGDEGVKSISEMKQLTSLNISGNRIGD 521

Query: 411 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
            GVK I ++  LT LN+S N  + D+ ++L++ L
Sbjct: 522 EGVKSISEMKQLTSLNISNN-RIGDEGVKLLTSL 554



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 157/305 (51%), Gaps = 1/305 (0%)

Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
           CN I       +S +  L SL IS +++ D G   +  +++LTLLN+    +      S+
Sbjct: 156 CNEIGVEGATSISEMKQLTSLNISGNRIGDEGAKLISEMKQLTLLNIADNRICVEGAKSI 215

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
           S +  L  L+++  ++   G +  S++  L +LN+  NEI DE    +  +  L SL++ 
Sbjct: 216 SEMKQLTSLSISDNEIGVVGAKLISEMNQLTLLNISNNEIGDEGAKFISEMKQLISLDIS 275

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
           +  I  EG  +++ +  L  LE+   ++G  G++ +S +  L S+++S   I  G  + +
Sbjct: 276 NNLIDIEGAKSISEMKQLTSLEIYYNEIGDEGVKFISKMEQLTSLDISGNQIGVGGAKSI 335

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
           + +  L  L + + +I D G  +++ +  LT L+++  +I D G  ++   + L SL+I 
Sbjct: 336 SEMKQLTFLQIFSNRIGDEGANSISEMKQLTSLNIYYNQIGDEGVKFISEMEQLTSLDIG 395

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
           G  +   G K I ++  LT L +  N  + D+ ++ IS +  L SLN+S +RI   G + 
Sbjct: 396 GNQIGVGGAKSISEMKQLTFLQIFSN-RIGDEGVKFISEMKQLTSLNISGNRIGDEGAKS 454

Query: 465 LNHAR 469
           ++  +
Sbjct: 455 ISEMK 459



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 144/307 (46%), Gaps = 26/307 (8%)

Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
           N+K+     D + K +S +  L SL I+ +++ D G+ ++  +++LTLL++        C
Sbjct: 105 NVKFSVYSLD-NAKFISEMKQLTSLGIAENRIGDEGVKFISEMKQLTLLDI--------C 155

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
            + +                  +G    S++  L  LN+  N I DE    +  +  L  
Sbjct: 156 CNEIGV----------------EGATSISEMKQLTSLNISGNRIGDEGAKLISEMKQLTL 199

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           LN+    I  EG  +++ +  L  L +SD ++G  G + +S +  L  +N+S   I D  
Sbjct: 200 LNIADNRICVEGAKSISEMKQLTSLSISDNEIGVVGAKLISEMNQLTLLNISNNEIGDEG 259

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
            + ++ +  L SL++    I   G  +++ +  LT L+++   I D G  ++   + L S
Sbjct: 260 AKFISEMKQLISLDISNNLIDIEGAKSISEMKQLTSLEIYYNEIGDEGVKFISKMEQLTS 319

Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
           L+I G  +   G K I ++  LT L +  N  + D+    IS +  L SLN+  ++I   
Sbjct: 320 LDISGNQIGVGGAKSISEMKQLTFLQIFSN-RIGDEGANSISEMKQLTSLNIYYNQIGDE 378

Query: 461 GLRHLNH 467
           G++ ++ 
Sbjct: 379 GVKFISE 385



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 110/227 (48%), Gaps = 1/227 (0%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           D  +  S++  L  L +  N I DE +  +  +  L  L++    IG EG  +++ +  L
Sbjct: 114 DNAKFISEMKQLTSLGIAENRIGDEGVKFISEMKQLTLLDICCNEIGVEGATSISEMKQL 173

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L +S  ++G  G + +S +  L  +N++   I     + ++ +  L SL++   +I  
Sbjct: 174 TSLNISGNRIGDEGAKLISEMKQLTLLNIADNRICVEGAKSISEMKQLTSLSISDNEIGV 233

Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
            G   ++ +  LT L++    I D GA ++   K L SL+I    +   G K I ++  L
Sbjct: 234 VGAKLISEMNQLTLLNISNNEIGDEGAKFISEMKQLISLDISNNLIDIEGAKSISEMKQL 293

Query: 423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           T L +  N  + D+ ++ IS +  L SL++S ++I   G + ++  +
Sbjct: 294 TSLEIYYN-EIGDEGVKFISKMEQLTSLDISGNQIGVGGAKSISEMK 339


>gi|168699408|ref|ZP_02731685.1| hypothetical protein GobsU_07802 [Gemmata obscuriglobus UQM 2246]
          Length = 320

 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 96/253 (37%), Positives = 141/253 (55%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N +TD+ MK L+ L NL SL++    VTD+G+  L  L+KLT L L    VT A +  L+
Sbjct: 59  NKMTDAGMKELAALRNLTSLKLIGPVVTDAGLKALAPLKKLTTLQLTAAKVTDAGVKELA 118

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
           +L SL  L+L    ++D G ++ + +  L  L+L   ++TD  L  L  L NL +L+L S
Sbjct: 119 SLASLTTLDLASTNVTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSLGS 178

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
             +    L  L  L NLK L L DT++  +GL+ L+ LT+L ++ L+ T ++D  L+ L 
Sbjct: 179 TAVTGASLKELAPLTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGLT 238

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
            L +L  LNL   ++T  GL  L +L  LT LDL    +TD+G   L    NL+ L + G
Sbjct: 239 PLKNLSDLNLGGTKVTSAGLKELAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRLVG 298

Query: 406 GGLTDAGVKHIKD 418
             +T  GVK  KD
Sbjct: 299 AKVTTKGVKEFKD 311



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/237 (37%), Positives = 137/237 (57%)

Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
           K+TD+G+  L  L+ LT L L G  VT A L +L+ L  L  L L   +++D G ++ + 
Sbjct: 60  KMTDAGMKELAALRNLTSLKLIGPVVTDAGLKALAPLKKLTTLQLTAAKVTDAGVKELAS 119

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
           + SL  L+L    +TD  +  L  LT L +L+L    + D GL  L  L NL  L L  T
Sbjct: 120 LASLTTLDLASTNVTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSLGST 179

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
            V  + L+ L+ LTNL++++L  T ++D  L++LA L+SL +L L A ++TD GL  LT 
Sbjct: 180 AVTGASLKELAPLTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGLTP 239

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
           L  L+ L+L G ++T +G   L   KNL  L++    +TDAG+K +  L++L +L L
Sbjct: 240 LKNLSDLNLGGTKVTSAGLKELAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRL 296



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/239 (35%), Positives = 127/239 (53%), Gaps = 2/239 (0%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           +++D G++ L  L NLTSL       +T  G+KA A L  L  L L        G+  L 
Sbjct: 60  KMTDAGMKELAALRNLTSLKL-IGPVVTDAGLKALAPLKKLTTLQLTAAKVTDAGVKELA 118

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
            L  L +L++   N +TD+ +K L+ LT L +L +S +KVTD+G+  L  L+ L  L+L 
Sbjct: 119 SLASLTTLDLASTN-VTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSLG 177

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
              VT A L  L+ L +L  L+L   +++D G ++ + + SL  L L   ++TD  L  L
Sbjct: 178 STAVTGASLKELAPLTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGL 237

Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
             L NL  LNL    +   GL  L  L NL  L+L  T V  +GL+ L+ LTNL+ + L
Sbjct: 238 TPLKNLSDLNLGGTKVTSAGLKELAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRL 296



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/235 (34%), Positives = 122/235 (51%), Gaps = 3/235 (1%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L S+ L G  VTD+GL  L     L +L      +++D G++ L  L++LT+L     N 
Sbjct: 75  LTSLKLIGPVVTDAGLKALAPLKKLTTLQLT-AAKVTDAGVKELASLASLTTLDLASTN- 132

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           +T  G+K  A L  L  LDL        GL  L  L  L +L++     +T + +K L+ 
Sbjct: 133 VTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSL-GSTAVTGASLKELAP 191

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           LTNLK+L +  +K+TD+G+  L  L  LT L L    VT A L  L+ L +L  LNL   
Sbjct: 192 LTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGLTPLKNLSDLNLGGT 251

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +++  G ++ + + +L VL+L    +TD  L  L  LTNL+ L L    +  +G+
Sbjct: 252 KVTSAGLKELAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRLVGAKVTTKGV 306



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 128/232 (55%), Gaps = 4/232 (1%)

Query: 42  PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
           P V D  +  +A     L ++ L+ + VTD+G+  L   ++L +LD      ++D G++ 
Sbjct: 83  PVVTDAGLKALAPL-KKLTTLQLTAAKVTDAGVKELASLASLTTLDLA-STNVTDAGVKE 140

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
           L  L+ LT+L       +T  G+K  A L NLV L L         L  L  L  L++L+
Sbjct: 141 LAPLTRLTALDL-SGTKVTDAGLKELAPLKNLVTLSLGSTAVTGASLKELAPLTNLKTLH 199

Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
           + +   +TD+ +K L+ LT+L +L ++ +KVTD+G+  L  L+ L+ LNL G  VT+A L
Sbjct: 200 L-YDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGLTPLKNLSDLNLGGTKVTSAGL 258

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
             L+AL +L  L+L+   ++D G ++ + + +LKVL L   ++T + +   K
Sbjct: 259 KELAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRLVGAKVTTKGVKEFK 310


>gi|46446916|ref|YP_008281.1| hypothetical protein pc1282 [Candidatus Protochlamydia amoebophila
            UWE25]
 gi|46400557|emb|CAF24006.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila
            UWE25]
          Length = 1082

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/318 (33%), Positives = 164/318 (51%), Gaps = 30/318 (9%)

Query: 69   VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
            +TD+ L+ LK+C NL++L    C  ++D GL HL  L  L  L     +  T  G+    
Sbjct: 781  LTDAHLLALKNCKNLKALHLQECPNLTDAGLAHLTSLVTLQHLDLSYCSNFTDAGLAHLR 840

Query: 129  GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
             L+ L  L+L  C  +   GL +L  L+ L+ L++ +C+  TD+ +  L+ L  L+ L +
Sbjct: 841  PLVALTHLNLRWCRNLTDAGLAHLTPLVALKYLDLSYCSNFTDAGLTHLTPLVTLQHLDL 900

Query: 188  S-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
            S CS  TD+G+A+L+ L  LT LNL  C   T A L  L+ L +L +LNLN C       
Sbjct: 901  SCCSNFTDAGLAHLRPLVALTHLNLRWCHNFTDAGLAHLTPLVALQHLNLNLCW------ 954

Query: 246  EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKC 304
                             ++TD  L HL+ L  L++L+L  C    D GL +LT L  L+ 
Sbjct: 955  -----------------KLTDAGLAHLRPLVALQNLDLSYCSNFTDAGLAHLTPLVVLQH 997

Query: 305  LELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQIT 361
            L+LS   ++  +GL HL+ L  L+ ++LS+   ++D  LR L  L +L+ L L +    T
Sbjct: 998  LDLSSCKKLTDAGLAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLALQDLYLYSCENFT 1057

Query: 362  DTGLAALTSLTGLTHLDL 379
            + GLA   S     HL+L
Sbjct: 1058 EVGLAHFKSSVASLHLNL 1075



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/287 (35%), Positives = 156/287 (54%), Gaps = 20/287 (6%)

Query: 146  GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 204
              L+ LK    L++L+++ C  +TD+ +  L+ L  L+ L +S CS  TD+G+A+L+ L 
Sbjct: 784  AHLLALKNCKNLKALHLQECPNLTDAGLAHLTSLVTLQHLDLSYCSNFTDAGLAHLRPLV 843

Query: 205  KLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF- 261
             LT LNL  C  +T A L  L+ L +L YL+L+ C   +D G    + + +L+ L+L   
Sbjct: 844  ALTHLNLRWCRNLTDAGLAHLTPLVALKYLDLSYCSNFTDAGLTHLTPLVTLQHLDLSCC 903

Query: 262  NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK------CLELSDTQVGS 314
            +  TD  L HL+ L  L  LNL  C    D GL +LT L  L+      C +L+D     
Sbjct: 904  SNFTDAGLAHLRPLVALTHLNLRWCHNFTDAGLAHLTPLVALQHLNLNLCWKLTD----- 958

Query: 315  SGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT 372
            +GL HL  L  L++++LS+ +  +D  L  L  L  L+ L+L + +++TD GLA LT L 
Sbjct: 959  AGLAHLRPLVALQNLDLSYCSNFTDAGLAHLTPLVVLQHLDLSSCKKLTDAGLAHLTPLV 1018

Query: 373  GLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIK 417
             L HLDL +   +TD+G  +L     L+ L +      T+ G+ H K
Sbjct: 1019 ALQHLDLSWCNHLTDAGLRHLTPLLALQDLYLYSCENFTEVGLAHFK 1065



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/283 (34%), Positives = 153/283 (54%), Gaps = 10/283 (3%)

Query: 13   ELVYSR--CLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SD 68
            EL +S+   LT+  L A ++C  L+ L L + P + D  +  + S   +L  +DLS  S+
Sbjct: 772  ELNFSKNIFLTDAHLLALKNCKNLKALHLQECPNLTDAGLAHLTS-LVTLQHLDLSYCSN 830

Query: 69   VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
             TD+GL HL+    L  L+  +C  ++D GL HL  L  L  L     +  T  G+    
Sbjct: 831  FTDAGLAHLRPLVALTHLNLRWCRNLTDAGLAHLTPLVALKYLDLSYCSNFTDAGLTHLT 890

Query: 129  GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
             L+ L  LDL  C+     GL +L+ L+ L  LN++WC+  TD+ +  L+ L  L+ L +
Sbjct: 891  PLVTLQHLDLSCCSNFTDAGLAHLRPLVALTHLNLRWCHNFTDAGLAHLTPLVALQHLNL 950

Query: 188  S-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
            + C K+TD+G+A+L+ L  L  L+L  C   T A L  L+ L  L +L+L+ C +L+D G
Sbjct: 951  NLCWKLTDAGLAHLRPLVALQNLDLSYCSNFTDAGLAHLTPLVVLQHLDLSSCKKLTDAG 1010

Query: 245  CEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC 286
                + + +L+ L+L + N +TD  L HL  L  L+ L L SC
Sbjct: 1011 LAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLALQDLYLYSC 1053



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 108/319 (33%), Positives = 155/319 (48%), Gaps = 32/319 (10%)

Query: 156  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
            ++E LN      +TD+ +  L    NLK+L +  C  +TD+G+A+L  L  L  L+L  C
Sbjct: 769  EIEELNFSKNIFLTDAHLLALKNCKNLKALHLQECPNLTDAGLAHLTSLVTLQHLDLSYC 828

Query: 215  P-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
               T A L  L  L +L +LNL  C+                        +TD  L HL 
Sbjct: 829  SNFTDAGLAHLRPLVALTHLNLRWCR-----------------------NLTDAGLAHLT 865

Query: 274  GLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 331
             L  L+ L+L  C    D GL +LT L  L+ L+LS  +    +GL HL  L  L  +NL
Sbjct: 866  PLVALKYLDLSYCSNFTDAGLTHLTPLVTLQHLDLSCCSNFTDAGLAHLRPLVALTHLNL 925

Query: 332  SF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL-FGARITDSG 388
             +    +D  L  L  L +L+ LNL+   ++TD GLA L  L  L +LDL + +  TD+G
Sbjct: 926  RWCHNFTDAGLAHLTPLVALQHLNLNLCWKLTDAGLAHLRPLVALQNLDLSYCSNFTDAG 985

Query: 389  AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
             A+L     L+ L++     LTDAG+ H+  L +L  L+LS   +LTD  L  ++ L  L
Sbjct: 986  LAHLTPLVVLQHLDLSSCKKLTDAGLAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLAL 1045

Query: 448  VSLNV-SNSRITSAGLRHL 465
              L + S    T  GL H 
Sbjct: 1046 QDLYLYSCENFTEVGLAHF 1064



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/199 (36%), Positives = 110/199 (55%), Gaps = 11/199 (5%)

Query: 58   SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
            +L  +DLS  S+ TD+GL HL     LQ LD + C   +D GL HLR L  LT L+ R  
Sbjct: 869  ALKYLDLSYCSNFTDAGLTHLTPLVTLQHLDLSCCSNFTDAGLAHLRPLVALTHLNLRWC 928

Query: 117  NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
            +  T  G+     L+ L  L+L  C ++   GL +L+ L+ L++L++ +C+  TD+ +  
Sbjct: 929  HNFTDAGLAHLTPLVALQHLNLNLCWKLTDAGLAHLRPLVALQNLDLSYCSNFTDAGLAH 988

Query: 176  LSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYL 233
            L+ L  L+ L + SC K+TD+G+A+L  L  L  L+L  C  +T A L  L+ L +L  L
Sbjct: 989  LTPLVVLQHLDLSSCKKLTDAGLAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLALQDL 1048

Query: 234  NLNRCQLSDDGCEKFSKIG 252
             L         CE F+++G
Sbjct: 1049 YLY-------SCENFTEVG 1060



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 117/228 (51%), Gaps = 31/228 (13%)

Query: 246 EKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           EK  K  S ++  L F++   +TD  L+ LK   NL++L+L  C        NLT     
Sbjct: 760 EKVLKYFSNEIEELNFSKNIFLTDAHLLALKNCKNLKALHLQECP-------NLTD---- 808

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQI 360
                       +GL HL+ L  L+ ++LS+ +  +D  L  L  L +L  LNL   R +
Sbjct: 809 ------------AGLAHLTSLVTLQHLDLSYCSNFTDAGLAHLRPLVALTHLNLRWCRNL 856

Query: 361 TDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKD 418
           TD GLA LT L  L +LDL + +  TD+G  +L     L+ L++ C    TDAG+ H++ 
Sbjct: 857 TDAGLAHLTPLVALKYLDLSYCSNFTDAGLTHLTPLVTLQHLDLSCCSNFTDAGLAHLRP 916

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHL 465
           L +LT LNL    N TD  L  ++ L  L  LN++   ++T AGL HL
Sbjct: 917 LVALTHLNLRWCHNFTDAGLAHLTPLVALQHLNLNLCWKLTDAGLAHL 964



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 2/149 (1%)

Query: 68   DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
            + TD+GL HL     LQ L+ N C +++D GL HLR L  L +L     +  T  G+   
Sbjct: 930  NFTDAGLAHLTPLVALQHLNLNLCWKLTDAGLAHLRPLVALQNLDLSYCSNFTDAGLAHL 989

Query: 128  AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
              L+ L  LDL  C ++   GL +L  L+ L+ L++ WCN +TD+ ++ L+ L  L+ L 
Sbjct: 990  TPLVVLQHLDLSSCKKLTDAGLAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLALQDLY 1049

Query: 187  I-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
            + SC   T+ G+A+ K       LNL+ C
Sbjct: 1050 LYSCENFTEVGLAHFKSSVASLHLNLKWC 1078



 Score = 46.2 bits (108), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 59   LLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
            L  +DLS    +TD+GL HL     LQ LD ++C  ++D GL HL  L  L  L      
Sbjct: 995  LQHLDLSSCKKLTDAGLAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLALQDLYLYSCE 1054

Query: 118  AITAQGMKAFAGLINLVKLDLERCTRIH 145
              T  G+  F   +  + L+L+ C R  
Sbjct: 1055 NFTEVGLAHFKSSVASLHLNLKWCKRFQ 1082


>gi|149174591|ref|ZP_01853217.1| hypothetical protein PM8797T_09969 [Planctomyces maris DSM 8797]
 gi|148846701|gb|EDL61038.1| hypothetical protein PM8797T_09969 [Planctomyces maris DSM 8797]
          Length = 346

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/229 (36%), Positives = 128/229 (55%), Gaps = 1/229 (0%)

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
            + ++      +++ SLK+L+   + ITD  + + +GL NLE+L L+   IGD GL +L 
Sbjct: 100 YEFTEADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERTSIGDAGLYHLR 159

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
            L  LK L L +T V   GL +L  LT L  +NLS T ISD  L  L G+ +L++L LDA
Sbjct: 160 DLRKLKVLRLWETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGMLNLQTLYLDA 219

Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
            Q++D GL  L  L  L  LDL  A +TD+G  +L   +NL+ L +    ++D G+ ++ 
Sbjct: 220 TQVSDRGLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKLTLADTQISDQGLVYLG 279

Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
            L  L  L++ +  N +D  L  + GL  L  LN  +++IT AG   L+
Sbjct: 280 KLKELHELDI-RYTNTSDAGLVHLQGLKSLAYLNWESTKITDAGYTRLH 327



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/243 (34%), Positives = 125/243 (51%), Gaps = 8/243 (3%)

Query: 161 NIKWCNCI--------TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
           N+ W + +        T++D+  ++ L +LK L  S S +TDS ++Y +GL  L  L LE
Sbjct: 87  NVTWISSVGYGDDYEFTEADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILE 146

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
              +  A L  L  L  L  L L    ++D G      +  L  LNL   +I+D  L+HL
Sbjct: 147 RTSIGDAGLYHLRDLRKLKVLRLWETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHL 206

Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
           KG+ NL++L LD+  + D GL+ L  L  L+ L+L D +V  +GL HLS   NL+ + L+
Sbjct: 207 KGMLNLQTLYLDATQVSDRGLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKLTLA 266

Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
            T ISD  L  L  L  L  L++     +D GL  L  L  L +L+    +ITD+G   L
Sbjct: 267 DTQISDQGLVYLGKLKELHELDIRYTNTSDAGLVHLQGLKSLAYLNWESTKITDAGYTRL 326

Query: 393 RNF 395
             F
Sbjct: 327 HEF 329



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 115/224 (51%), Gaps = 1/224 (0%)

Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
           +    T A L +++ L SL  L+ +   ++D     F  + +L+ L L    I D  L H
Sbjct: 98  DDYEFTEADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERTSIGDAGLYH 157

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
           L+ L  L+ L L    + D GL  L  L  L  L LS+T++  +GL HL G+ NL+++ L
Sbjct: 158 LRDLRKLKVLRLWETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGMLNLQTLYL 217

Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
             T +SD  L  L  L  L++L+L   ++TD GL  L+    L  L L   +I+D G  Y
Sbjct: 218 DATQVSDRGLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKLTLADTQISDQGLVY 277

Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
           L   K L  L+I     +DAG+ H++ L SL  LN  ++  +TD
Sbjct: 278 LGKLKELHELDIRYTNTSDAGLVHLQGLKSLAYLNW-ESTKITD 320



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 86/258 (33%), Positives = 125/258 (48%), Gaps = 30/258 (11%)

Query: 87  DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG 146
           D+ F    ++  L  +  L +L  L F  ++ IT   M  F GL NL  L LER +    
Sbjct: 99  DYEF----TEADLAAIAQLKSLKILDFS-SSLITDSDMSYFQGLYNLEALILERTSIGDA 153

Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
           GL +L+ L KL+ L + W   +TD  +  L  LT L  L +S +K++D+G+ +LKG    
Sbjct: 154 GLYHLRDLRKLKVLRL-WETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKG---- 208

Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
            +LNL+                    L L+  Q+SD G     ++  L+ L+L   E+TD
Sbjct: 209 -MLNLQT-------------------LYLDATQVSDRGLIYLKELPKLETLDLLDAEVTD 248

Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
             LVHL    NL+ L L    I D+GLV L  L  L  L++  T    +GL HL GL +L
Sbjct: 249 AGLVHLSECRNLKKLTLADTQISDQGLVYLGKLKELHELDIRYTNTSDAGLVHLQGLKSL 308

Query: 327 ESINLSFTGISDGSLRKL 344
             +N   T I+D    +L
Sbjct: 309 AYLNWESTKITDAGYTRL 326



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 112/243 (46%), Gaps = 27/243 (11%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           +Q  SL  +D S S +TDS + + +   NL++L       I D GL HLR L  L  L  
Sbjct: 111 AQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERT-SIGDAGLYHLRDLRKLKVLRL 169

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
              + +T  G+     L  L  L+L        GL++LKG++                  
Sbjct: 170 WETD-VTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGML------------------ 210

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
                  NL++L +  ++V+D G+ YLK L KL  L+L    VT A L  LS   +L  L
Sbjct: 211 -------NLQTLYLDATQVSDRGLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKL 263

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
            L   Q+SD G     K+  L  L++ +   +D  LVHL+GL +L  LN +S  I D G 
Sbjct: 264 TLADTQISDQGLVYLGKLKELHELDIRYTNTSDAGLVHLQGLKSLAYLNWESTKITDAGY 323

Query: 294 VNL 296
             L
Sbjct: 324 TRL 326



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 86/161 (53%), Gaps = 1/161 (0%)

Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
           D +   + L  ++ L +L+ ++ S + I+D  +    GL +L++L L+   I D GL  L
Sbjct: 99  DYEFTEADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERTSIGDAGLYHL 158

Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
             L  L  L L+   +TD G +YL++   L  L +    ++DAG+ H+K + +L  L L 
Sbjct: 159 RDLRKLKVLRLWETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGMLNLQTLYLD 218

Query: 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
               ++D+ L  +  L  L +L++ ++ +T AGL HL+  R
Sbjct: 219 A-TQVSDRGLIYLKELPKLETLDLLDAEVTDAGLVHLSECR 258



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 1/111 (0%)

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
           D  + T+  LAA+  L  L  LD   + ITDS  +Y +   NL +L +    + DAG+ H
Sbjct: 98  DDYEFTEADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERTSIGDAGLYH 157

Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
           ++DL  L +L L +  ++TD  L  +  LT L  LN+S ++I+ AGL HL 
Sbjct: 158 LRDLRKLKVLRLWE-TDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLK 207



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 55/114 (48%), Gaps = 9/114 (7%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
             L ++DL  ++VTD+GL+HL +C NL+ L      QISD GL +L  L  L  L  R  
Sbjct: 234 PKLETLDLLDAEVTDAGLVHLSECRNLKKLTLA-DTQISDQGLVYLGKLKELHELDIRYT 292

Query: 117 NAITAQGMKAFAGLINLVKLDLERC-------TRIHGGLVNLKGLMKLESLNIK 163
           N   A G+    GL +L  L+ E         TR+H  L  L    +  ++  K
Sbjct: 293 NTSDA-GLVHLQGLKSLAYLNWESTKITDAGYTRLHEFLPKLSRTQQFPTIIFK 345


>gi|46447548|ref|YP_008913.1| hypothetical protein pc1914 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401189|emb|CAF24638.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 528

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 122/348 (35%), Positives = 180/348 (51%), Gaps = 33/348 (9%)

Query: 65  SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
             + +T++ L+ LKDC N++ L F  C  ++D GL HL  L  L  L       +T  G+
Sbjct: 203 ENTHLTNAHLLALKDCKNIEVLYFKKCRGVTDAGLAHLVPLKGLQHLDLSYCENLTDAGL 262

Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
                L  L  L+L  C  +   GLV+L  L+ L+ L++ +C  +TD+ +  L+ LT L+
Sbjct: 263 AYLKPLTALQHLNLSGCWNLTDAGLVHLTPLVGLQHLDLSYCENLTDAGLAHLTPLTALQ 322

Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-L 240
            L +S C  +TD+G+A+L  L  L  L+L  C  +T A L  L+ L +L +L L  C+ L
Sbjct: 323 HLGLSCCENLTDAGLAHLALLTTLQHLDLSCCYNLTDASLSHLTPLTALQHLYLIGCENL 382

Query: 241 SDDGCEKFSKIGSLKVLNLG--FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT 297
           +D G    + + +L+ L+L   FN +TD  L HL  LT L+ LNL  C  + D GL +LT
Sbjct: 383 TDAGLAHLTPLTALQHLDLSCCFN-LTDAGLSHLTPLTGLQHLNLSRCYKLTDAGLAHLT 441

Query: 298 GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
            L  L+ L LS+   +  +GL HL+ LT L+ ++L +                   +NL 
Sbjct: 442 TLVALQHLNLSECRHLTDAGLAHLTPLTALQHLDLKY------------------CINL- 482

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEI 403
               TD GLA LT LT L HLDL    R+TD G    +      +LEI
Sbjct: 483 ----TDAGLAHLTPLTALQHLDLSRCRRLTDDGLDRFKTLATSLNLEI 526



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 128/382 (33%), Positives = 192/382 (50%), Gaps = 43/382 (11%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
            N Q +DF   I      +E          L+F  N  +T   + A     N+  L  ++
Sbjct: 178 QNFQLVDFEKIINHFSKKIE---------VLNFSENTHLTNAHLLALKDCKNIEVLYFKK 228

Query: 141 CTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIA 198
           C  +   GL +L  L  L+ L++ +C  +TD+ +  L  LT L+ L +S C  +TD+G+ 
Sbjct: 229 CRGVTDAGLAHLVPLKGLQHLDLSYCENLTDAGLAYLKPLTALQHLNLSGCWNLTDAGLV 288

Query: 199 YLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKV 256
           +L  L  L  L+L  C  +T A L  L+ L +L +L L+ C+ L+D G    + + +L+ 
Sbjct: 289 HLTPLVGLQHLDLSYCENLTDAGLAHLTPLTALQHLGLSCCENLTDAGLAHLALLTTLQH 348

Query: 257 LNLG--FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQV 312
           L+L   +N +TD  L HL  LT L+ L L  C  + D GL +LT L  L+ L+LS    +
Sbjct: 349 LDLSCCYN-LTDASLSHLTPLTALQHLYLIGCENLTDAGLAHLTPLTALQHLDLSCCFNL 407

Query: 313 GSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS 370
             +GL HL+ LT L+ +NLS    ++D  L  L  L +L+ LNL + R +TD GLA LT 
Sbjct: 408 TDAGLSHLTPLTGLQHLNLSRCYKLTDAGLAHLTTLVALQHLNLSECRHLTDAGLAHLTP 467

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           LT L HLDL           Y  N             LTDAG+ H+  L++L  L+LS+ 
Sbjct: 468 LTALQHLDL----------KYCIN-------------LTDAGLAHLTPLTALQHLDLSRC 504

Query: 431 CNLTDKTLELISGLTGLVSLNV 452
             LTD  L+    L   ++L +
Sbjct: 505 RRLTDDGLDRFKTLATSLNLEI 526



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 115/318 (36%), Positives = 173/318 (54%), Gaps = 11/318 (3%)

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
           K+E LN      +T++ +  L    N++ L    C  VTD+G+A+L  L+ L  L+L  C
Sbjct: 195 KIEVLNFSENTHLTNAHLLALKDCKNIEVLYFKKCRGVTDAGLAHLVPLKGLQHLDLSYC 254

Query: 215 P-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVH 271
             +T A L  L  L +L +LNL+ C  L+D G    + +  L+ L+L + E +TD  L H
Sbjct: 255 ENLTDAGLAYLKPLTALQHLNLSGCWNLTDAGLVHLTPLVGLQHLDLSYCENLTDAGLAH 314

Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 329
           L  LT L+ L L  C  + D GL +L  L  L+ L+LS    +  + L HL+ LT L+ +
Sbjct: 315 LTPLTALQHLGLSCCENLTDAGLAHLALLTTLQHLDLSCCYNLTDASLSHLTPLTALQHL 374

Query: 330 NL-SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITD 386
            L     ++D  L  L  L++L+ L+L     +TD GL+ LT LTGL HL+L    ++TD
Sbjct: 375 YLIGCENLTDAGLAHLTPLTALQHLDLSCCFNLTDAGLSHLTPLTGLQHLNLSRCYKLTD 434

Query: 387 SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
           +G A+L     L+ L +     LTDAG+ H+  L++L  L+L    NLTD  L  ++ LT
Sbjct: 435 AGLAHLTTLVALQHLNLSECRHLTDAGLAHLTPLTALQHLDLKYCINLTDAGLAHLTPLT 494

Query: 446 GLVSLNVSN-SRITSAGL 462
            L  L++S   R+T  GL
Sbjct: 495 ALQHLDLSRCRRLTDDGL 512



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 104/272 (38%), Positives = 154/272 (56%), Gaps = 10/272 (3%)

Query: 204 QKLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF 261
           +K+ +LN  E   +T A L +L    ++  L   +C+ ++D G      +  L+ L+L +
Sbjct: 194 KKIEVLNFSENTHLTNAHLLALKDCKNIEVLYFKKCRGVTDAGLAHLVPLKGLQHLDLSY 253

Query: 262 NE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLR 318
            E +TD  L +LK LT L+ LNL  C  + D GLV+LT L  L+ L+LS  + +  +GL 
Sbjct: 254 CENLTDAGLAYLKPLTALQHLNLSGCWNLTDAGLVHLTPLVGLQHLDLSYCENLTDAGLA 313

Query: 319 HLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTH 376
           HL+ LT L+ + LS    ++D  L  LA L++L+ L+L     +TD  L+ LT LT L H
Sbjct: 314 HLTPLTALQHLGLSCCENLTDAGLAHLALLTTLQHLDLSCCYNLTDASLSHLTPLTALQH 373

Query: 377 LDLFGAR-ITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
           L L G   +TD+G A+L     L+ L++ C   LTDAG+ H+  L+ L  LNLS+   LT
Sbjct: 374 LYLIGCENLTDAGLAHLTPLTALQHLDLSCCFNLTDAGLSHLTPLTGLQHLNLSRCYKLT 433

Query: 435 DKTLELISGLTGLVSLNVSNSR-ITSAGLRHL 465
           D  L  ++ L  L  LN+S  R +T AGL HL
Sbjct: 434 DAGLAHLTTLVALQHLNLSECRHLTDAGLAHL 465



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 105/298 (35%), Positives = 157/298 (52%), Gaps = 11/298 (3%)

Query: 20  LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWM-DVIASQGSSLLSVDLSG-SDVTDSGLIH 76
           LT   L A +DC  ++ L   +  GV D  +  ++  +G  L  +DLS   ++TD+GL +
Sbjct: 207 LTNAHLLALKDCKNIEVLYFKKCRGVTDAGLAHLVPLKG--LQHLDLSYCENLTDAGLAY 264

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
           LK  + LQ L+ + C  ++D GL HL  L  L  L       +T  G+     L  L  L
Sbjct: 265 LKPLTALQHLNLSGCWNLTDAGLVHLTPLVGLQHLDLSYCENLTDAGLAHLTPLTALQHL 324

Query: 137 DLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTD 194
            L  C  +   GL +L  L  L+ L++  C  +TD+ +  L+ LT L+ L  I C  +TD
Sbjct: 325 GLSCCENLTDAGLAHLALLTTLQHLDLSCCYNLTDASLSHLTPLTALQHLYLIGCENLTD 384

Query: 195 SGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIG 252
           +G+A+L  L  L  L+L  C  +T A L  L+ L  L +LNL+RC +L+D G    + + 
Sbjct: 385 AGLAHLTPLTALQHLDLSCCFNLTDAGLSHLTPLTGLQHLNLSRCYKLTDAGLAHLTTLV 444

Query: 253 SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELS 308
           +L+ LNL     +TD  L HL  LT L+ L+L  C  + D GL +LT L  L+ L+LS
Sbjct: 445 ALQHLNLSECRHLTDAGLAHLTPLTALQHLDLKYCINLTDAGLAHLTPLTALQHLDLS 502



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 87/244 (35%), Positives = 135/244 (55%), Gaps = 7/244 (2%)

Query: 57  SSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
           ++L  ++LSG  ++TD+GL+HL     LQ LD ++C  ++D GL HL  L+ L  L    
Sbjct: 269 TALQHLNLSGCWNLTDAGLVHLTPLVGLQHLDLSYCENLTDAGLAHLTPLTALQHLGLSC 328

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
              +T  G+   A L  L  LDL  C  +    L +L  L  L+ L +  C  +TD+ + 
Sbjct: 329 CENLTDAGLAHLALLTTLQHLDLSCCYNLTDASLSHLTPLTALQHLYLIGCENLTDAGLA 388

Query: 175 PLSGLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFY 232
            L+ LT L+ L +SC   +TD+G+++L  L  L  LNL  C  +T A L  L+ L +L +
Sbjct: 389 HLTPLTALQHLDLSCCFNLTDAGLSHLTPLTGLQHLNLSRCYKLTDAGLAHLTTLVALQH 448

Query: 233 LNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIG 289
           LNL+ C+ L+D G    + + +L+ L+L +   +TD  L HL  LT L+ L+L  C  + 
Sbjct: 449 LNLSECRHLTDAGLAHLTPLTALQHLDLKYCINLTDAGLAHLTPLTALQHLDLSRCRRLT 508

Query: 290 DEGL 293
           D+GL
Sbjct: 509 DDGL 512



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           +TD+GL HL   + LQ LD  +CI ++D GL HL  L+ L  L   R   +T  G+  F 
Sbjct: 457 LTDAGLAHLTPLTALQHLDLKYCINLTDAGLAHLTPLTALQHLDLSRCRRLTDDGLDRFK 516

Query: 129 GLINLVKLDLER 140
            L   + L++ R
Sbjct: 517 TLATSLNLEIVR 528


>gi|46447554|ref|YP_008919.1| hypothetical protein pc1920 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401195|emb|CAF24644.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 517

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 110/318 (34%), Positives = 159/318 (50%), Gaps = 55/318 (17%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           +TD+ L+ LK C NL+ L    C  I+D GL HL  L+ L                    
Sbjct: 238 LTDAHLLALKVCKNLKVLHLEACQAITDDGLAHLTPLTALQ------------------- 278

Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
                  LDL +C ++ G GL +L  L  L+ L++  C+ +TD+ +  L+ LT L+ L +
Sbjct: 279 ------HLDLSQCRKLTGIGLAHLTPLTALQHLDLSGCDNLTDAGLAHLAPLTALQHLNL 332

Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
           S C  +TD+G+ +L  L  L  L+L  C  +  A L  L  L +L YL+L+ C  L+D G
Sbjct: 333 SDCENLTDAGLVHLSPLIALQHLDLSYCWRLNYAGLAHLKPLTALQYLDLSHCINLTDAG 392

Query: 245 CEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 302
                 +  L+ LNL + E +TD  L HL  L  L+ LNL  C  + D GL +LT L  L
Sbjct: 393 LAHLKPLMRLQYLNLRYCENLTDAGLAHLTPLMALQHLNLSECYHLTDAGLTHLTPLTAL 452

Query: 303 KCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
           + L+LS  + +  +GL HL+ LT L+ ++LS+                        + +T
Sbjct: 453 QHLDLSHCRSLTDAGLAHLTSLTVLQYLDLSY-----------------------CKNLT 489

Query: 362 DTGLAALTSLTGLTHLDL 379
           D GLA LT LTGL HLDL
Sbjct: 490 DAGLARLTPLTGLQHLDL 507



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 109/309 (35%), Positives = 158/309 (51%), Gaps = 31/309 (10%)

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
           K+E+LN      +TD+ +  L    NLK L + +C  +TD G+A+L  L  L  L+L  C
Sbjct: 226 KIEALNFSENAYLTDAHLLALKVCKNLKVLHLEACQAITDDGLAHLTPLTALQHLDLSQC 285

Query: 215 -PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVH 271
             +T   L  L+ L +L +L+L+ C  L+D G    + + +L+ LNL   E +TD  LVH
Sbjct: 286 RKLTGIGLAHLTPLTALQHLDLSGCDNLTDAGLAHLAPLTALQHLNLSDCENLTDAGLVH 345

Query: 272 LKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 329
           L  L  L+ L+L  C  +   GL +L  L  L+ L+LS    +  +GL HL  L  L+ +
Sbjct: 346 LSPLIALQHLDLSYCWRLNYAGLAHLKPLTALQYLDLSHCINLTDAGLAHLKPLMRLQYL 405

Query: 330 NLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDS 387
           NL +   ++D  L  L  L +L+ LNL +   +TD GL  LT LT L HLDL   R    
Sbjct: 406 NLRYCENLTDAGLAHLTPLMALQHLNLSECYHLTDAGLTHLTPLTALQHLDLSHCR---- 461

Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
                               LTDAG+ H+  L+ L  L+LS   NLTD  L  ++ LTGL
Sbjct: 462 -------------------SLTDAGLAHLTSLTVLQYLDLSYCKNLTDAGLARLTPLTGL 502

Query: 448 VSLNVSNSR 456
             L++S  +
Sbjct: 503 QHLDLSRCK 511



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/236 (35%), Positives = 127/236 (53%), Gaps = 6/236 (2%)

Query: 57  SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
           ++L  +DLS    +T  GL HL   + LQ LD + C  ++D GL HL  L+ L  L+   
Sbjct: 275 TALQHLDLSQCRKLTGIGLAHLTPLTALQHLDLSGCDNLTDAGLAHLAPLTALQHLNLSD 334

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
              +T  G+   + LI L  LDL  C R+ + GL +LK L  L+ L++  C  +TD+ + 
Sbjct: 335 CENLTDAGLVHLSPLIALQHLDLSYCWRLNYAGLAHLKPLTALQYLDLSHCINLTDAGLA 394

Query: 175 PLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFY 232
            L  L  L+ L +  C  +TD+G+A+L  L  L  LNL  C  +T A L  L+ L +L +
Sbjct: 395 HLKPLMRLQYLNLRYCENLTDAGLAHLTPLMALQHLNLSECYHLTDAGLTHLTPLTALQH 454

Query: 233 LNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC 286
           L+L+ C+ L+D G    + +  L+ L+L +   +TD  L  L  LT L+ L+L  C
Sbjct: 455 LDLSHCRSLTDAGLAHLTSLTVLQYLDLSYCKNLTDAGLARLTPLTGLQHLDLSRC 510


>gi|297803756|ref|XP_002869762.1| hypothetical protein ARALYDRAFT_492485 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315598|gb|EFH46021.1| hypothetical protein ARALYDRAFT_492485 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 590

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 128/428 (29%), Positives = 187/428 (43%), Gaps = 104/428 (24%)

Query: 98  GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMK 156
           G +H     ++ ++  R  ++I A+ M    G +NLV L+L  C RI+   L  + GL  
Sbjct: 58  GFKH-----SVENIDLRGESSINAEWMAYIGGFVNLVSLNLSDCQRINSSTLWPITGLTS 112

Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
           L  L++  C  +TD+ +K L  + NLK L IS + VT  GI+ L  LQKL+LL+L G PV
Sbjct: 113 LTELDLSRCFKVTDAGIKHLQSVVNLKKLWISQTGVTKVGISLLASLQKLSLLDLGGLPV 172

Query: 217 TAACLDSLSALGSLFYL-------------------NLNRCQLSDDGCEKFSKIGSLKVL 257
           T   L +L  L  L YL                   NL+   LS     +   I  L+ L
Sbjct: 173 TDHNLIALQELTKLEYLDIWGSNVTNQGAISILQFSNLSFLNLSWTSVTQTPNIPHLECL 232

Query: 258 NLGFNEITDECLVH---------------------------------------------- 271
           ++    I  E   H                                              
Sbjct: 233 HMNMCTIVSEPKTHCSLASLKKLVLSGANFSAETEALSFTNKSSITYLDVSKTSLQNFSF 292

Query: 272 LKGLTNLESLNLDSCGIGDE--GLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLES 328
           ++ + NLE L+L S   GD+  G V   G  NLK L +SDT++ S+G+ +L+G +  LE+
Sbjct: 293 IETMINLEHLDLSSTAFGDDSVGFVACVG-ENLKNLNVSDTKITSAGVGNLAGHVPQLET 351

Query: 329 INLSFTGISD-----------------------------GSLRKLAGLSSLKSLNLDARQ 359
            +LS T + D                              SL  L  L+SLK+L+L+   
Sbjct: 352 FSLSQTFVDDLSILLISTMMPCVKALDLGMTSIREEQAEPSLAALQSLTSLKTLSLEHPY 411

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
           + DT L+AL+SLTGLTHL L    +TDS   +L +  NL SL +    LT  G++  +  
Sbjct: 412 LGDTALSALSSLTGLTHLSLRSTSLTDSTLHHLSSLPNLVSLGVRDAVLTSNGLEKFRPP 471

Query: 420 SSLTLLNL 427
             L  L+L
Sbjct: 472 KRLRTLDL 479


>gi|430746590|ref|YP_007205719.1| hypothetical protein Sinac_5908 [Singulisphaera acidiphila DSM
           18658]
 gi|430018310|gb|AGA30024.1| hypothetical protein Sinac_5908 [Singulisphaera acidiphila DSM
           18658]
          Length = 506

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 130/431 (30%), Positives = 204/431 (47%), Gaps = 58/431 (13%)

Query: 47  KWM-DVIASQ-GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ------ISDGG 98
           KWM D        ++++V L G +V D     L++   L  +++ F IQ      ++  G
Sbjct: 112 KWMRDAFGPDLFDTVVNVHLEGDNVDDE---LLENVGKLHGVEW-FTIQGHAAPNLTPAG 167

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
           +  LR LS L  LS R            F              T  HG L  L G  +L 
Sbjct: 168 MAQLRTLSRLKGLSVR-----------GF--------------TDSHGFLAGLMGKTRLS 202

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
            L +     +TD +M  + GLT+L+ LQ+    VTD G A++  L++L+LL++ G  +T 
Sbjct: 203 HLRLPEA-AVTDDEMAIIGGLTDLEVLQLDGRNVTDRGFAHVANLKELSLLDMPGVRIT- 260

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
                L+ +  L  L++    LS D    F++     V + G        L  L+GLTNL
Sbjct: 261 ----DLAPVTDLVQLDV--LGLSPDRA-TFAR----SVPSPG----GPSSLGPLRGLTNL 305

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
             L L +  I D  L    GL  L  L +   ++  +GL  L+   +L  +  + T I+D
Sbjct: 306 TQLTLGATQIEDRELAVAAGLPKLSYLMIGGRRITEAGLARLAESKSLTGLRFTDTSIAD 365

Query: 339 GSLRKLAG-LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
             LR L+  L +L  L ++   +TD GL  L+  T +  L + G+R+TD+G  +L    +
Sbjct: 366 --LRPLSPRLHALWGLYMENSALTDAGLEPLSDATRIGDLTITGSRMTDAGLHHLAPLPS 423

Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
           L  L +    +TDAG+  +K L SL  L+L++   LTD ++E ++G   L SLN+  S I
Sbjct: 424 LWKLRLGRSAITDAGLGRLKSLKSLETLSLTE-TKLTDSSVETLAGFQSLKSLNLDRSGI 482

Query: 458 TSAGLRHLNHA 468
           + AG+  L  A
Sbjct: 483 SPAGIERLKQA 493



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 103/231 (44%), Gaps = 26/231 (11%)

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLD---SCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
           ++L  + + DE L ++  L  +E   +    +  +   G+  L  L  LK L +      
Sbjct: 129 VHLEGDNVDDELLENVGKLHGVEWFTIQGHAAPNLTPAGMAQLRTLSRLKGLSVRGFTDS 188

Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
              L  L G T L  + L    ++D  +  + GL+ L+ L LD R +TD G A + +L  
Sbjct: 189 HGFLAGLMGKTRLSHLRLPEAAVTDDEMAIIGGLTDLEVLQLDGRNVTDRGFAHVANLKE 248

Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICG---------------GGLTDAGVKHIKD 418
           L+ LD+ G RITD     L    +L  L++ G               GG +  G   ++ 
Sbjct: 249 LSLLDMPGVRITD-----LAPVTDLVQLDVLGLSPDRATFARSVPSPGGPSSLG--PLRG 301

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           L++LT L L     + D+ L + +GL  L  L +   RIT AGL  L  ++
Sbjct: 302 LTNLTQLTLGA-TQIEDRELAVAAGLPKLSYLMIGGRRITEAGLARLAESK 351


>gi|168701031|ref|ZP_02733308.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 389

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/272 (35%), Positives = 135/272 (49%), Gaps = 23/272 (8%)

Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
           T A L  LS    L  LNL   Q++D   +  ++   L VLN+ + +ITDE L  + GLT
Sbjct: 55  TDAGLKELSLFAGLTNLNLTNTQVTDAALKDVARFPKLTVLNVSYTQITDEGLREIAGLT 114

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
            L  L LD   +   GL +L  L  L+ L L    V  +GLR L G+  L  ++L  T +
Sbjct: 115 ELTDLVLDYTKVSGSGLKHLAALTKLRTLSLGSKIVTDAGLRGLVGVRGLRQLDLRETSV 174

Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
           +D  L+++A LS LK+L L    +T  GL  L  LT L  L L G RIT  G + L   K
Sbjct: 175 TDAGLKEIAPLSELKTLMLVNAPVTGPGLKDLALLTKLQFLFLSGTRITGDGLSELTGLK 234

Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ-----------------------NCNL 433
           +LR LE+ G  LTDAG+K +    +L  L LS                        +  +
Sbjct: 235 SLRLLELGGTPLTDAGLKQLAGFDTLGHLGLSNTKVTGAGLKELAALKQLSGLDLGSTKI 294

Query: 434 TDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           TD  L+ I+ LT L  L + ++ +T AG+R+L
Sbjct: 295 TDADLKEIAALTNLTGLTMRDTPVTDAGVRNL 326



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 105/345 (30%), Positives = 174/345 (50%), Gaps = 3/345 (0%)

Query: 73  GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
           G + L D + +  +D +     +D GL+ L   + LT+L+   N  +T   +K  A    
Sbjct: 34  GRVFLSDGA-VTGVDLSGAKTFTDAGLKELSLFAGLTNLNLT-NTQVTDAALKDVARFPK 91

Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
           L  L++        GL  + GL +L  L + +   ++ S +K L+ LT L++L +    V
Sbjct: 92  LTVLNVSYTQITDEGLREIAGLTELTDLVLDYTK-VSGSGLKHLAALTKLRTLSLGSKIV 150

Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
           TD+G+  L G++ L  L+L    VT A L  ++ L  L  L L    ++  G +  + + 
Sbjct: 151 TDAGLRGLVGVRGLRQLDLRETSVTDAGLKEIAPLSELKTLMLVNAPVTGPGLKDLALLT 210

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
            L+ L L    IT + L  L GL +L  L L    + D GL  L G   L  L LS+T+V
Sbjct: 211 KLQFLFLSGTRITGDGLSELTGLKSLRLLELGGTPLTDAGLKQLAGFDTLGHLGLSNTKV 270

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
             +GL+ L+ L  L  ++L  T I+D  L+++A L++L  L +    +TD G+  L  LT
Sbjct: 271 TGAGLKELAALKQLSGLDLGSTKITDADLKEIAALTNLTGLTMRDTPVTDAGVRNLAPLT 330

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
            L  L+L   ++T++ A  L  FK+L S+++    +T+ G K +K
Sbjct: 331 KLRRLNLTHTKVTNACAKTLATFKHLTSVDLHQTDVTEEGGKELK 375



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 107/307 (34%), Positives = 156/307 (50%), Gaps = 10/307 (3%)

Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
           FAGL NL   +L         L ++    KL  LN+ +   ITD  ++ ++GLT L  L 
Sbjct: 65  FAGLTNL---NLTNTQVTDAALKDVARFPKLTVLNVSYTQ-ITDEGLREIAGLTELTDLV 120

Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
           +  +KV+ SG+ +L  L KL  L+L    VT A L  L  +  L  L+L    ++D G +
Sbjct: 121 LDYTKVSGSGLKHLAALTKLRTLSLGSKIVTDAGLRGLVGVRGLRQLDLRETSVTDAGLK 180

Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
           + + +  LK L L    +T   L  L  LT L+ L L    I  +GL  LTGL +L+ LE
Sbjct: 181 EIAPLSELKTLMLVNAPVTGPGLKDLALLTKLQFLFLSGTRITGDGLSELTGLKSLRLLE 240

Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL- 365
           L  T +  +GL+ L+G   L  + LS T ++   L++LA L  L  L+L + +ITD  L 
Sbjct: 241 LGGTPLTDAGLKQLAGFDTLGHLGLSNTKVTGAGLKELAALKQLSGLDLGSTKITDADLK 300

Query: 366 --AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
             AALT+LTGLT  D     +TD+G   L     LR L +    +T+A  K +     LT
Sbjct: 301 EIAALTNLTGLTMRD---TPVTDAGVRNLAPLTKLRRLNLTHTKVTNACAKTLATFKHLT 357

Query: 424 LLNLSQN 430
            ++L Q 
Sbjct: 358 SVDLHQT 364



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/301 (31%), Positives = 158/301 (52%), Gaps = 1/301 (0%)

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
           +++      TD+ +K LS    L +L ++ ++VTD+ +  +    KLT+LN+    +T  
Sbjct: 46  VDLSGAKTFTDAGLKELSLFAGLTNLNLTNTQVTDAALKDVARFPKLTVLNVSYTQITDE 105

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            L  ++ L  L  L L+  ++S  G +  + +  L+ L+LG   +TD  L  L G+  L 
Sbjct: 106 GLREIAGLTELTDLVLDYTKVSGSGLKHLAALTKLRTLSLGSKIVTDAGLRGLVGVRGLR 165

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L+L    + D GL  +  L  LK L L +  V   GL+ L+ LT L+ + LS T I+  
Sbjct: 166 QLDLRETSVTDAGLKEIAPLSELKTLMLVNAPVTGPGLKDLALLTKLQFLFLSGTRITGD 225

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L +L GL SL+ L L    +TD GL  L     L HL L   ++T +G   L   K L 
Sbjct: 226 GLSELTGLKSLRLLELGGTPLTDAGLKQLAGFDTLGHLGLSNTKVTGAGLKELAALKQLS 285

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L++    +TDA +K I  L++LT L + ++  +TD  +  ++ LT L  LN++++++T+
Sbjct: 286 GLDLGSTKITDADLKEIAALTNLTGLTM-RDTPVTDAGVRNLAPLTKLRRLNLTHTKVTN 344

Query: 460 A 460
           A
Sbjct: 345 A 345



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 148/295 (50%), Gaps = 14/295 (4%)

Query: 4   RDISQQIFNEL-VYSRCLTEVSLEAFRDCA----LQDLCLGQYPGVNDKWMDVIASQGSS 58
           +D+++  F +L V +   T+++ E  R+ A    L DL L  Y  V+   +  +A+  + 
Sbjct: 84  KDVAR--FPKLTVLNVSYTQITDEGLREIAGLTELTDLVL-DYTKVSGSGLKHLAAL-TK 139

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L ++ L    VTD+GL  L     L+ LD      ++D GL+ +  LS L +L    N  
Sbjct: 140 LRTLSLGSKIVTDAGLRGLVGVRGLRQLDLRET-SVTDAGLKEIAPLSELKTLML-VNAP 197

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
           +T  G+K  A L  L  L L   TRI G GL  L GL  L  L +     +TD+ +K L+
Sbjct: 198 VTGPGLKDLALLTKLQFLFLS-GTRITGDGLSELTGLKSLRLLEL-GGTPLTDAGLKQLA 255

Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
           G   L  L +S +KVT +G+  L  L++L+ L+L    +T A L  ++AL +L  L +  
Sbjct: 256 GFDTLGHLGLSNTKVTGAGLKELAALKQLSGLDLGSTKITDADLKEIAALTNLTGLTMRD 315

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
             ++D G    + +  L+ LNL   ++T+ C   L    +L S++L    + +EG
Sbjct: 316 TPVTDAGVRNLAPLTKLRRLNLTHTKVTNACAKTLATFKHLTSVDLHQTDVTEEG 370



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 2/93 (2%)

Query: 374 LTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
           +T +DL GA+  TD+G   L  F  L +L +    +TDA +K +     LT+LN+S    
Sbjct: 43  VTGVDLSGAKTFTDAGLKELSLFAGLTNLNLTNTQVTDAALKDVARFPKLTVLNVSY-TQ 101

Query: 433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           +TD+ L  I+GLT L  L +  ++++ +GL+HL
Sbjct: 102 ITDEGLREIAGLTELTDLVLDYTKVSGSGLKHL 134



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 3/144 (2%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           SL  ++L G+ +TD+GL  L     L  L  +   +++  GL+ L  L  L+ L    + 
Sbjct: 235 SLRLLELGGTPLTDAGLKQLAGFDTLGHLGLS-NTKVTGAGLKELAALKQLSGLDL-GST 292

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
            IT   +K  A L NL  L +        G+ NL  L KL  LN+     +T++  K L+
Sbjct: 293 KITDADLKEIAALTNLTGLTMRDTPVTDAGVRNLAPLTKLRRLNLTHTK-VTNACAKTLA 351

Query: 178 GLTNLKSLQISCSKVTDSGIAYLK 201
              +L S+ +  + VT+ G   LK
Sbjct: 352 TFKHLTSVDLHQTDVTEEGGKELK 375


>gi|168698162|ref|ZP_02730439.1| hypothetical protein GobsU_01482 [Gemmata obscuriglobus UQM 2246]
          Length = 295

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 103/268 (38%), Positives = 145/268 (54%), Gaps = 1/268 (0%)

Query: 164 WCNC-ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
           W +  +TD+ +K L+GLTNL  L +  + VTD G+  L  L+ L  L+L    VT A L 
Sbjct: 7   WRDLQVTDAGLKELAGLTNLTQLILLGTAVTDVGLEELAPLKNLNTLDLGKTKVTDAGLK 66

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
           +L+ L  L  L L    ++D G ++     SLK L L   ++TD  L  L    NL  L 
Sbjct: 67  ALAPLTGLTRLALGDTGVTDAGLKELVPFKSLKTLYLFSTKVTDAGLKELGRFKNLTVLG 126

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
           L   G+ D GL  L    NL  L LS T V  +GL+ L+ L NL  + L  TG++D  L+
Sbjct: 127 LGGTGVTDAGLRELGRFKNLTALGLSGTGVTDAGLKELAPLKNLTELGLGGTGVADVGLK 186

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
           +LA   +L  L+L + ++TD GL  L  L  LT LDL   ++TD G   L   K L +L 
Sbjct: 187 ELAPFKNLAKLDLYSTKVTDAGLKELGLLKNLTLLDLGRTQVTDDGLRELTGLKALTTLI 246

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           + G G+TDAG+K +  L++LT LNL + 
Sbjct: 247 LIGTGVTDAGLKELAGLTNLTRLNLYRT 274



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 100/278 (35%), Positives = 148/278 (53%), Gaps = 1/278 (0%)

Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
           +VTD+G+  L GL  LT L L G  VT   L+ L+ L +L  L+L + +++D G +  + 
Sbjct: 11  QVTDAGLKELAGLTNLTQLILLGTAVTDVGLEELAPLKNLNTLDLGKTKVTDAGLKALAP 70

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
           +  L  L LG   +TD  L  L    +L++L L S  + D GL  L    NL  L L  T
Sbjct: 71  LTGLTRLALGDTGVTDAGLKELVPFKSLKTLYLFSTKVTDAGLKELGRFKNLTVLGLGGT 130

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
            V  +GLR L    NL ++ LS TG++D  L++LA L +L  L L    + D GL  L  
Sbjct: 131 GVTDAGLRELGRFKNLTALGLSGTGVTDAGLKELAPLKNLTELGLGGTGVADVGLKELAP 190

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
              L  LDL+  ++TD+G   L   KNL  L++    +TD G++ +  L +LT L L   
Sbjct: 191 FKNLAKLDLYSTKVTDAGLKELGLLKNLTLLDLGRTQVTDDGLRELTGLKALTTLILI-G 249

Query: 431 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHA 468
             +TD  L+ ++GLT L  LN+  +++T AG + L  A
Sbjct: 250 TGVTDAGLKELAGLTNLTRLNLYRTKVTDAGWKELKSA 287



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 104/279 (37%), Positives = 149/279 (53%), Gaps = 2/279 (0%)

Query: 92  IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
           +Q++D GL+ L GL+NLT L      A+T  G++  A L NL  LDL +      GL  L
Sbjct: 10  LQVTDAGLKELAGLTNLTQLIL-LGTAVTDVGLEELAPLKNLNTLDLGKTKVTDAGLKAL 68

Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
             L  L  L +     +TD+ +K L    +LK+L +  +KVTD+G+  L   + LT+L L
Sbjct: 69  APLTGLTRLALG-DTGVTDAGLKELVPFKSLKTLYLFSTKVTDAGLKELGRFKNLTVLGL 127

Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
            G  VT A L  L    +L  L L+   ++D G ++ + + +L  L LG   + D  L  
Sbjct: 128 GGTGVTDAGLRELGRFKNLTALGLSGTGVTDAGLKELAPLKNLTELGLGGTGVADVGLKE 187

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
           L    NL  L+L S  + D GL  L  L NL  L+L  TQV   GLR L+GL  L ++ L
Sbjct: 188 LAPFKNLAKLDLYSTKVTDAGLKELGLLKNLTLLDLGRTQVTDDGLRELTGLKALTTLIL 247

Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
             TG++D  L++LAGL++L  LNL   ++TD G   L S
Sbjct: 248 IGTGVTDAGLKELAGLTNLTRLNLYRTKVTDAGWKELKS 286



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 144/303 (47%), Gaps = 25/303 (8%)

Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
           R+  +T  G+K  AGL NL +L                         I     +TD  ++
Sbjct: 8   RDLQVTDAGLKELAGLTNLTQL-------------------------ILLGTAVTDVGLE 42

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
            L+ L NL +L +  +KVTD+G+  L  L  LT L L    VT A L  L    SL  L 
Sbjct: 43  ELAPLKNLNTLDLGKTKVTDAGLKALAPLTGLTRLALGDTGVTDAGLKELVPFKSLKTLY 102

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           L   +++D G ++  +  +L VL LG   +TD  L  L    NL +L L   G+ D GL 
Sbjct: 103 LFSTKVTDAGLKELGRFKNLTVLGLGGTGVTDAGLRELGRFKNLTALGLSGTGVTDAGLK 162

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
            L  L NL  L L  T V   GL+ L+   NL  ++L  T ++D  L++L  L +L  L+
Sbjct: 163 ELAPLKNLTELGLGGTGVADVGLKELAPFKNLAKLDLYSTKVTDAGLKELGLLKNLTLLD 222

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
           L   Q+TD GL  LT L  LT L L G  +TD+G   L    NL  L +    +TDAG K
Sbjct: 223 LGRTQVTDDGLRELTGLKALTTLILIGTGVTDAGLKELAGLTNLTRLNLYRTKVTDAGWK 282

Query: 415 HIK 417
            +K
Sbjct: 283 ELK 285



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 100/319 (31%), Positives = 150/319 (47%), Gaps = 39/319 (12%)

Query: 26  EAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQS 85
           + +RD  + D  L +  G+            ++L  + L G+ VTD GL  L    NL +
Sbjct: 5   KPWRDLQVTDAGLKELAGL------------TNLTQLILLGTAVTDVGLEELAPLKNLNT 52

Query: 86  LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
           LD     +++D GL+ L  L+ LT L+   +  +T  G+K                    
Sbjct: 53  LDLGKT-KVTDAGLKALAPLTGLTRLAL-GDTGVTDAGLKE------------------- 91

Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
             LV  K L  L   + K    +TD+ +K L    NL  L +  + VTD+G+  L   + 
Sbjct: 92  --LVPFKSLKTLYLFSTK----VTDAGLKELGRFKNLTVLGLGGTGVTDAGLRELGRFKN 145

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
           LT L L G  VT A L  L+ L +L  L L    ++D G ++ +   +L  L+L   ++T
Sbjct: 146 LTALGLSGTGVTDAGLKELAPLKNLTELGLGGTGVADVGLKELAPFKNLAKLDLYSTKVT 205

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
           D  L  L  L NL  L+L    + D+GL  LTGL  L  L L  T V  +GL+ L+GLTN
Sbjct: 206 DAGLKELGLLKNLTLLDLGRTQVTDDGLRELTGLKALTTLILIGTGVTDAGLKELAGLTN 265

Query: 326 LESINLSFTGISDGSLRKL 344
           L  +NL  T ++D   ++L
Sbjct: 266 LTRLNLYRTKVTDAGWKEL 284



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 92/157 (58%), Gaps = 1/157 (0%)

Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
           D QV  +GL+ L+GLTNL  + L  T ++D  L +LA L +L +L+L   ++TD GL AL
Sbjct: 9   DLQVTDAGLKELAGLTNLTQLILLGTAVTDVGLEELAPLKNLNTLDLGKTKVTDAGLKAL 68

Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
             LTGLT L L    +TD+G   L  FK+L++L +    +TDAG+K +    +LT+L L 
Sbjct: 69  APLTGLTRLALGDTGVTDAGLKELVPFKSLKTLYLFSTKVTDAGLKELGRFKNLTVLGLG 128

Query: 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
               +TD  L  +     L +L +S + +T AGL+ L
Sbjct: 129 -GTGVTDAGLRELGRFKNLTALGLSGTGVTDAGLKEL 164



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/145 (37%), Positives = 74/145 (51%), Gaps = 3/145 (2%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
            +L ++ LSG+ VTD+GL  L    NL  L       ++D GL+ L    NL  L    +
Sbjct: 144 KNLTALGLSGTGVTDAGLKELAPLKNLTELGLG-GTGVADVGLKELAPFKNLAKLDL-YS 201

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             +T  G+K    L NL  LDL R      GL  L GL  L +L I     +TD+ +K L
Sbjct: 202 TKVTDAGLKELGLLKNLTLLDLGRTQVTDDGLRELTGLKALTTL-ILIGTGVTDAGLKEL 260

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLK 201
           +GLTNL  L +  +KVTD+G   LK
Sbjct: 261 AGLTNLTRLNLYRTKVTDAGWKELK 285



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 52/133 (39%), Gaps = 25/133 (18%)

Query: 43  GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC----------- 91
           GV D  +  +A    +L  + L G+ V D GL  L    NL  LD               
Sbjct: 155 GVTDAGLKELAPL-KNLTELGLGGTGVADVGLKELAPFKNLAKLDLYSTKVTDAGLKELG 213

Query: 92  ------------IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
                        Q++D GL  L GL  LT+L       +T  G+K  AGL NL +L+L 
Sbjct: 214 LLKNLTLLDLGRTQVTDDGLRELTGLKALTTLILI-GTGVTDAGLKELAGLTNLTRLNLY 272

Query: 140 RCTRIHGGLVNLK 152
           R      G   LK
Sbjct: 273 RTKVTDAGWKELK 285


>gi|290970865|ref|XP_002668286.1| predicted protein [Naegleria gruberi]
 gi|284081599|gb|EFC35542.1| predicted protein [Naegleria gruberi]
          Length = 368

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 187/377 (49%), Gaps = 28/377 (7%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           QI D   + +  +  LTSL    NN I  +G+K+ + +  LV                  
Sbjct: 13  QIGDKEAKFISEMKQLTSLDIY-NNRIGDEGVKSISEMKQLV------------------ 53

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
                 SLNI + N I D  +K +  +  L SL I  +++ D G+ ++  +++LT LN+ 
Sbjct: 54  ------SLNI-YNNRIGDEGVKSIIEMKQLTSLDIGGNRIGDEGVKFISEMKQLTSLNIS 106

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
              +       +S +  L  LN+   ++ D+G +   ++  LK L++G N+I+ E    +
Sbjct: 107 ENQIGDKEATFISEMKQLTSLNIYNNRIGDEGVKSIIEMKQLKSLDIGRNQISVEGAKFI 166

Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
             +  L SLN+ +  I DEG+ +++ +  L  L +++ ++G    + +S +  L S+++ 
Sbjct: 167 SEMKQLVSLNIYNNRI-DEGVKSISEMKQLTSLNIAENRIGDKEAKFISEMKQLTSLDIY 225

Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
              I D     ++ +  L SLN+   +I D G+ ++  +  LT LD+   RI D G  ++
Sbjct: 226 NNRIGDEGAIFISKMKQLTSLNIYNNRIGDEGVKSIIEMKRLTSLDIGRNRIGDEGVKFI 285

Query: 393 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
              K L SL+I    + D GVK I ++  LT LN+S+N  + D+  + IS +  L SL++
Sbjct: 286 SEMKQLASLDISENRIGDEGVKSISEMKQLTSLNISEN-RIGDEGAKSISEMKRLKSLDI 344

Query: 453 SNSRITSAGLRHLNHAR 469
             ++I   G++ ++  +
Sbjct: 345 GGNQIGDEGVKFISEMK 361



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 189/369 (51%), Gaps = 6/369 (1%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L S+ +SG+ + D     + +   L SLD  +  +I D G++ +  +  L SL+   NN 
Sbjct: 4   LTSLIISGNQIGDKEAKFISEMKQLTSLDI-YNNRIGDEGVKSISEMKQLVSLNIY-NNR 61

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
           I  +G+K+   +  L  LD+    RI   G+  +  + +L SLNI   N I D +   +S
Sbjct: 62  IGDEGVKSIIEMKQLTSLDI-GGNRIGDEGVKFISEMKQLTSLNISE-NQIGDKEATFIS 119

Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
            +  L SL I  +++ D G+  +  +++L  L++    ++      +S +  L  LN+  
Sbjct: 120 EMKQLTSLNIYNNRIGDEGVKSIIEMKQLKSLDIGRNQISVEGAKFISEMKQLVSLNIYN 179

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
            ++ D+G +  S++  L  LN+  N I D+    +  +  L SL++ +  IGDEG + ++
Sbjct: 180 NRI-DEGVKSISEMKQLTSLNIAENRIGDKEAKFISEMKQLTSLDIYNNRIGDEGAIFIS 238

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
            +  L  L + + ++G  G++ +  +  L S+++    I D  ++ ++ +  L SL++  
Sbjct: 239 KMKQLTSLNIYNNRIGDEGVKSIIEMKRLTSLDIGRNRIGDEGVKFISEMKQLASLDISE 298

Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
            +I D G+ +++ +  LT L++   RI D GA  +   K L+SL+I G  + D GVK I 
Sbjct: 299 NRIGDEGVKSISEMKQLTSLNISENRIGDEGAKSISEMKRLKSLDIGGNQIGDEGVKFIS 358

Query: 418 DLSSLTLLN 426
           ++  L  LN
Sbjct: 359 EMKQLASLN 367



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 110/223 (49%), Gaps = 24/223 (10%)

Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
           N+I D+    +  +  L SL++ +  IGDEG+ +++ +  L  L + + ++G  G++ + 
Sbjct: 12  NQIGDKEAKFISEMKQLTSLDIYNNRIGDEGVKSISEMKQLVSLNIYNNRIGDEGVKSII 71

Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
            +  L S+++    I D  ++ ++ +  L SLN+   QI D     ++ +  LT L+++ 
Sbjct: 72  EMKQLTSLDIGGNRIGDEGVKFISEMKQLTSLNISENQIGDKEATFISEMKQLTSLNIYN 131

Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLT-----------------------DAGVKHIKD 418
            RI D G   +   K L+SL+I    ++                       D GVK I +
Sbjct: 132 NRIGDEGVKSIIEMKQLKSLDIGRNQISVEGAKFISEMKQLVSLNIYNNRIDEGVKSISE 191

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
           +  LT LN+++N  + DK  + IS +  L SL++ N+RI   G
Sbjct: 192 MKQLTSLNIAEN-RIGDKEAKFISEMKQLTSLDIYNNRIGDEG 233



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 4/167 (2%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
           + DK    I S+   L S+D+  + + D G I +     L SL+  +  +I D G++ + 
Sbjct: 205 IGDKEAKFI-SEMKQLTSLDIYNNRIGDEGAIFISKMKQLTSLNI-YNNRIGDEGVKSII 262

Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
            +  LTSL   R N I  +G+K  + +  L  LD+        G+ ++  + +L SLNI 
Sbjct: 263 EMKRLTSLDIGR-NRIGDEGVKFISEMKQLASLDISENRIGDEGVKSISEMKQLTSLNIS 321

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
             N I D   K +S +  LKSL I  +++ D G+ ++  +++L  LN
Sbjct: 322 E-NRIGDEGAKSISEMKRLKSLDIGGNQIGDEGVKFISEMKQLASLN 367


>gi|32477504|ref|NP_870498.1| adenylate cyclase regulatory protein [Rhodopirellula baltica SH 1]
 gi|32448058|emb|CAD77575.1| conserved hypothetical protein-putative adenylate cyclase
           regulatory protein [Rhodopirellula baltica SH 1]
          Length = 513

 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 104/322 (32%), Positives = 156/322 (48%), Gaps = 33/322 (10%)

Query: 42  PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ--ISDGGL 99
           PG++D  M+ + S  ++L  + L+ + +TD     LK    + SLD  F  +  ++D GL
Sbjct: 176 PGIDDAGMENLKSL-ANLKRLTLADTAITDQ---TLKTVGEMTSLDALFLRRTGVTDEGL 231

Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
           E L GLS L ++  R  N I   GM + A +  L+ + LE+      GLV L  L  L+S
Sbjct: 232 ELLTGLSKLRAIDLRNTN-IGDAGMDSLAKIKTLIDVKLEKSKVTDEGLVKLAPL-PLKS 289

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
           +N  +C  I    MK L     L++LQ   SK+ D  +A LKGL KL  L + GC VT  
Sbjct: 290 INFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSKLKRLRIRGCDVTGE 349

Query: 220 ------------------------CLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSL 254
                                    L  +S L ++ +++++ C+L S +G  +  K+  L
Sbjct: 350 GIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRLASPEGIAQLGKLTGL 409

Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
             L L   +  DE L     L NLE LNL S  + DE L  L  +  LK L ++ TQ+G 
Sbjct: 410 TYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTKLKTLNVAGTQLGD 469

Query: 315 SGLRHLSGLTNLESINLSFTGI 336
                L+ L NL+S+N++ T I
Sbjct: 470 DSFLELAKLPNLKSMNVANTSI 491



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 172/374 (45%), Gaps = 34/374 (9%)

Query: 90  FCIQISDGGLE----HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
           F I    GG+E    HLRG+ N T  +F     I   GM+    L NL +L L       
Sbjct: 146 FSIANQKGGIEESLQHLRGIPNTTEATFN-GPGIDDAGMENLKSLANLKRLTLADT---- 200

Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
                                 ITD  +K +  +T+L +L +  + VTD G+  L GL K
Sbjct: 201 ---------------------AITDQTLKTVGEMTSLDALFLRRTGVTDEGLELLTGLSK 239

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEI 264
           L  ++L    +  A +DSL+ + +L  + L + +++D+G  K + +  LK +N  +   I
Sbjct: 240 LRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVTDEGLVKLAPL-PLKSINFNYCTTI 298

Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
               +  L     LE+L  D   I DE +  L GL  LK L +    V   G++H++G  
Sbjct: 299 NGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSKLKRLRIRGCDVTGEGIQHIAGNK 358

Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR 383
            L    L  + + D  L+ ++ L ++  +++ + R  +  G+A L  LTGLT+L L+  +
Sbjct: 359 ALARFELRDSSVDDDGLKVISQLPAVTHVDISECRLASPEGIAQLGKLTGLTYLGLWETK 418

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
             D   A   +  NL  L +    +TD  +  +  ++ L  LN++    L D +   ++ 
Sbjct: 419 TNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTKLKTLNVA-GTQLGDDSFLELAK 477

Query: 444 LTGLVSLNVSNSRI 457
           L  L S+NV+N+ I
Sbjct: 478 LPNLKSMNVANTSI 491



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 129/270 (47%), Gaps = 16/270 (5%)

Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
           V +  IA  KG  + +L +L G P T                  N   + D G E    +
Sbjct: 143 VVEFSIANQKGGIEESLQHLRGIPNTTEA-------------TFNGPGIDDAGMENLKSL 189

Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
            +LK L L    ITD+ L  +  +T+L++L L   G+ DEGL  LTGL  L+ ++L +T 
Sbjct: 190 ANLKRLTLADTAITDQTLKTVGEMTSLDALFLRRTGVTDEGLELLTGLSKLRAIDLRNTN 249

Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS 370
           +G +G+  L+ +  L  + L  + ++D  L KLA L  LKS+N +    I    +  L  
Sbjct: 250 IGDAGMDSLAKIKTLIDVKLEKSKVTDEGLVKLAPL-PLKSINFNYCTTINGPTMKMLGQ 308

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
              L +L    ++I D   A L+    L+ L I G  +T  G++HI    +L    L ++
Sbjct: 309 TPTLENLQGDYSKINDESMAELKGLSKLKRLRIRGCDVTGEGIQHIAGNKALARFEL-RD 367

Query: 431 CNLTDKTLELISGLTGLVSLNVSNSRITSA 460
            ++ D  L++IS L  +  +++S  R+ S 
Sbjct: 368 SSVDDDGLKVISQLPAVTHVDISECRLASP 397



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 108/222 (48%), Gaps = 25/222 (11%)

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
           +E L HL+G+ N      +  GI D G+ NL  L NLK L L+DT +    L+ +  +T+
Sbjct: 156 EESLQHLRGIPNTTEATFNGPGIDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTS 215

Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           L+++ L  TG++D  L  L GLS L++++L    I D G+ +L  +  L  + L  +++T
Sbjct: 216 LDALFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVT 275

Query: 386 DSGAAYLR-------NFK-----NLRSLEICGGGLT------------DAGVKHIKDLSS 421
           D G   L        NF      N  ++++ G   T            D  +  +K LS 
Sbjct: 276 DEGLVKLAPLPLKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSK 335

Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
           L  L + + C++T + ++ I+G   L    + +S +   GL+
Sbjct: 336 LKRLRI-RGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLK 376



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 1/104 (0%)

Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
           +  L  L  +   T     G  I D+G   L++  NL+ L +    +TD  +K + +++S
Sbjct: 156 EESLQHLRGIPNTTEATFNGPGIDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTS 215

Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           L  L L +   +TD+ LEL++GL+ L ++++ N+ I  AG+  L
Sbjct: 216 LDALFL-RRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSL 258


>gi|406830574|ref|ZP_11090168.1| hypothetical protein SpalD1_03019 [Schlesneria paludicola DSM
           18645]
          Length = 404

 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 98/299 (32%), Positives = 145/299 (48%), Gaps = 27/299 (9%)

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
            TD+D+  L     L+SL +S ++++  GIA L  L+ LT+L+L   PV  A    L  L
Sbjct: 63  FTDADVTLLKTFPELESLDLSGTQISGKGIAELSVLRSLTVLHLANLPVKNAQFKKLIEL 122

Query: 228 GSLFYLNLNRCQLSDD------------------------GCEKFSKIGSLKVLNLGFNE 263
            SL  L++   Q+SD                         G    SK G L +L+L    
Sbjct: 123 DSLTTLDVADTQVSDAALQGSIAHPNLTTLVLSGNRITNAGLNDLSKFGQLAILDLTQTR 182

Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
           ++DE +  LK L NL  L L    I D GL  + GL +LK L+L+ TQ+  +GL+HL GL
Sbjct: 183 VSDEGMTALKRLENLTELRLSGNVITDTGLEAIGGLSHLKILDLTATQITDAGLKHLRGL 242

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
            NL  + L    + D  +  L  + +L +L+  A QITD  L+AL  +  LT LDL    
Sbjct: 243 NNLNELKLGRNQVKDNGVNALVEIPTLIALDFYATQITDECLSALGQIANLTTLDLGKNP 302

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
           I+D G   L   +NL+ + +    +T +G+K  +D     L+      N TD+ +E  S
Sbjct: 303 ISDFGLRNLTRLRNLKEIGLVEAPVTASGLKRFQDAIGTPLI---ITWNGTDQDIEAAS 358



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/257 (32%), Positives = 136/257 (52%), Gaps = 5/257 (1%)

Query: 142 TRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
           T+I G G+  L  L  L  L++     + ++  K L  L +L +L ++ ++V+D+ +   
Sbjct: 85  TQISGKGIAELSVLRSLTVLHLANL-PVKNAQFKKLIELDSLTTLDVADTQVSDAALQGS 143

Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
                LT L L G  +T A L+ LS  G L  L+L + ++SD+G     ++ +L  L L 
Sbjct: 144 IAHPNLTTLVLSGNRITNAGLNDLSKFGQLAILDLTQTRVSDEGMTALKRLENLTELRLS 203

Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
            N ITD  L  + GL++L+ L+L +  I D GL +L GL NL  L+L   QV  +G+  L
Sbjct: 204 GNVITDTGLEAIGGLSHLKILDLTATQITDAGLKHLRGLNNLNELKLGRNQVKDNGVNAL 263

Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
             +  L +++   T I+D  L  L  +++L +L+L    I+D GL  LT L  L  + L 
Sbjct: 264 VEIPTLIALDFYATQITDECLSALGQIANLTTLDLGKNPISDFGLRNLTRLRNLKEIGLV 323

Query: 381 GARITDSGAAYLRNFKN 397
            A +T SG   L+ F++
Sbjct: 324 EAPVTASG---LKRFQD 337



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 136/288 (47%), Gaps = 28/288 (9%)

Query: 185 LQISC---SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
           +QI C    + TD+ +  LK   +L  L+L G  ++   +  LS L SL  L+L    + 
Sbjct: 53  VQIDCRDAQEFTDADVTLLKTFPELESLDLSGTQISGKGIAELSVLRSLTVLHLANLPVK 112

Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
           +   +K  ++ SL  L++   +++D  L                     +G +      N
Sbjct: 113 NAQFKKLIELDSLTTLDVADTQVSDAAL---------------------QGSI---AHPN 148

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
           L  L LS  ++ ++GL  LS    L  ++L+ T +SD  +  L  L +L  L L    IT
Sbjct: 149 LTTLVLSGNRITNAGLNDLSKFGQLAILDLTQTRVSDEGMTALKRLENLTELRLSGNVIT 208

Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
           DTGL A+  L+ L  LDL   +ITD+G  +LR   NL  L++    + D GV  + ++ +
Sbjct: 209 DTGLEAIGGLSHLKILDLTATQITDAGLKHLRGLNNLNELKLGRNQVKDNGVNALVEIPT 268

Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           L  L+      +TD+ L  +  +  L +L++  + I+  GLR+L   R
Sbjct: 269 LIALDFYA-TQITDECLSALGQIANLTTLDLGKNPISDFGLRNLTRLR 315



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 151/345 (43%), Gaps = 28/345 (8%)

Query: 30  DCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVD-LSGSDVTDSGLIHLKDCSNLQSLDF 88
           D   QD  + +   +  K +       S ++ +D     + TD+ +  LK    L+SLD 
Sbjct: 23  DDVTQDTAIQRIEALGGKVVRNQERPSSPVVQIDCRDAQEFTDADVTLLKTFPELESLDL 82

Query: 89  NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
           +   QIS  G+  L  L +LT L         AQ  K                      L
Sbjct: 83  S-GTQISGKGIAELSVLRSLTVLHLANLPVKNAQFKK----------------------L 119

Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
           + L  L  L+  + +    ++D+ ++      NL +L +S +++T++G+  L    +L +
Sbjct: 120 IELDSLTTLDVADTQ----VSDAALQGSIAHPNLTTLVLSGNRITNAGLNDLSKFGQLAI 175

Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
           L+L    V+   + +L  L +L  L L+   ++D G E    +  LK+L+L   +ITD  
Sbjct: 176 LDLTQTRVSDEGMTALKRLENLTELRLSGNVITDTGLEAIGGLSHLKILDLTATQITDAG 235

Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
           L HL+GL NL  L L    + D G+  L  +  L  L+   TQ+    L  L  + NL +
Sbjct: 236 LKHLRGLNNLNELKLGRNQVKDNGVNALVEIPTLIALDFYATQITDECLSALGQIANLTT 295

Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
           ++L    ISD  LR L  L +LK + L    +T +GL       G
Sbjct: 296 LDLGKNPISDFGLRNLTRLRNLKEIGLVEAPVTASGLKRFQDAIG 340


>gi|417301579|ref|ZP_12088730.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
           WH47]
 gi|327542171|gb|EGF28664.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
           WH47]
          Length = 442

 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 103/320 (32%), Positives = 152/320 (47%), Gaps = 29/320 (9%)

Query: 42  PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
           PG++D  M+ + S    L  + L+ + +TD  L       ++Q L F     ++D GLE 
Sbjct: 105 PGIDDAGMENLTSL-PKLKYLTLADTAITDETLKTAGKLDSVQGL-FLRRTGVTDEGLEL 162

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
           L GLS L ++  R  N I   GM + A +  L+ + LE+      GLV L  L  L+S+N
Sbjct: 163 LTGLSKLRAIDLRNTN-IGDAGMDSLAKIKTLIDVQLEKSKVTDEGLVKLAPL-PLKSIN 220

Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-- 219
             +C  I    MK L     L+ LQ   SK+ D+ +A LKGL KL  L + GC VT    
Sbjct: 221 FNYCTTINGPTMKMLGQTPTLEYLQGDYSKINDASMAELKGLSKLKRLRIRGCDVTGEGI 280

Query: 220 ----------------------CLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSLKV 256
                                  L  +S L ++ Y++++ C+L S +G  +  K+  L  
Sbjct: 281 QHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISECRLASPEGIAQLGKLTGLTY 340

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
           L L   +  DE L     L NLE LNL S  + DE L  L  +  LK L ++ TQ+G   
Sbjct: 341 LGLWETKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTKLKTLNVAGTQLGDDS 400

Query: 317 LRHLSGLTNLESINLSFTGI 336
              L+ L NL+S+N++ T I
Sbjct: 401 FLELAKLPNLKSMNVANTSI 420



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 164/353 (46%), Gaps = 5/353 (1%)

Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
           N+   S         + ++  +G+ N  K           G+ NL  L KL+ L +    
Sbjct: 71  NVVEFSIANQKGGIEESLQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADT- 129

Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
            ITD  +K    L +++ L +  + VTD G+  L GL KL  ++L    +  A +DSL+ 
Sbjct: 130 AITDETLKTAGKLDSVQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAK 189

Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 285
           + +L  + L + +++D+G  K + +  LK +N  +   I    +  L     LE L  D 
Sbjct: 190 IKTLIDVQLEKSKVTDEGLVKLAPL-PLKSINFNYCTTINGPTMKMLGQTPTLEYLQGDY 248

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
             I D  +  L GL  LK L +    V   G++H++G   L    L  + + D  L+ ++
Sbjct: 249 SKINDASMAELKGLSKLKRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVIS 308

Query: 346 GLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
            L ++  +++ + R  +  G+A L  LTGLT+L L+  +  D   A   +  NL  L + 
Sbjct: 309 QLPAVTYVDISECRLASPEGIAQLGKLTGLTYLGLWETKTNDETLAGFGDLVNLEELNLK 368

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
              +TD  +  +  ++ L  LN++    L D +   ++ L  L S+NV+N+ I
Sbjct: 369 STAVTDESLPVLMKMTKLKTLNVA-GTQLGDDSFLELAKLPNLKSMNVANTSI 420



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 156/336 (46%), Gaps = 6/336 (1%)

Query: 71  DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
           +  L HL    N     FN    I D G+E+L  L  L  L+   + AIT + +K    L
Sbjct: 85  EESLQHLSGIPNTTKATFN-GPGIDDAGMENLTSLPKLKYLTLA-DTAITDETLKTAGKL 142

Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
            ++  L L R      GL  L GL KL +++++  N I D+ M  L+ +  L  +Q+  S
Sbjct: 143 DSVQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNTN-IGDAGMDSLAKIKTLIDVQLEKS 201

Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
           KVTD G+  L  L  L  +N   C  +    +  L    +L YL  +  +++D    +  
Sbjct: 202 KVTDEGLVKLAPL-PLKSINFNYCTTINGPTMKMLGQTPTLEYLQGDYSKINDASMAELK 260

Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
            +  LK L +   ++T E + H+ G   L    L    + D+GL  ++ L  +  +++S+
Sbjct: 261 GLSKLKRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISE 320

Query: 310 TQVGSS-GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
            ++ S  G+  L  LT L  + L  T  +D +L     L +L+ LNL +  +TD  L  L
Sbjct: 321 CRLASPEGIAQLGKLTGLTYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVL 380

Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
             +T L  L++ G ++ D     L    NL+S+ + 
Sbjct: 381 MKMTKLKTLNVAGTQLGDDSFLELAKLPNLKSMNVA 416



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 127/270 (47%), Gaps = 16/270 (5%)

Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
           V +  IA  KG  + +L +L G P T                  N   + D G E  + +
Sbjct: 72  VVEFSIANQKGGIEESLQHLSGIPNTTKA-------------TFNGPGIDDAGMENLTSL 118

Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
             LK L L    ITDE L     L +++ L L   G+ DEGL  LTGL  L+ ++L +T 
Sbjct: 119 PKLKYLTLADTAITDETLKTAGKLDSVQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNTN 178

Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS 370
           +G +G+  L+ +  L  + L  + ++D  L KLA L  LKS+N +    I    +  L  
Sbjct: 179 IGDAGMDSLAKIKTLIDVQLEKSKVTDEGLVKLAPL-PLKSINFNYCTTINGPTMKMLGQ 237

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
              L +L    ++I D+  A L+    L+ L I G  +T  G++HI    +L    L ++
Sbjct: 238 TPTLEYLQGDYSKINDASMAELKGLSKLKRLRIRGCDVTGEGIQHIAGNKALARFEL-RD 296

Query: 431 CNLTDKTLELISGLTGLVSLNVSNSRITSA 460
            ++ D  L++IS L  +  +++S  R+ S 
Sbjct: 297 SSVDDDGLKVISQLPAVTYVDISECRLASP 326



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 107/226 (47%), Gaps = 25/226 (11%)

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
           +E L HL G+ N      +  GI D G+ NLT L  LK L L+DT +    L+    L +
Sbjct: 85  EESLQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADTAITDETLKTAGKLDS 144

Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           ++ + L  TG++D  L  L GLS L++++L    I D G+ +L  +  L  + L  +++T
Sbjct: 145 VQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVQLEKSKVT 204

Query: 386 DSGAAYLR-------NFK-----NLRSLEICGGGLT------------DAGVKHIKDLSS 421
           D G   L        NF      N  ++++ G   T            DA +  +K LS 
Sbjct: 205 DEGLVKLAPLPLKSINFNYCTTINGPTMKMLGQTPTLEYLQGDYSKINDASMAELKGLSK 264

Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNH 467
           L  L + + C++T + ++ I+G   L    + +S +   GL+ ++ 
Sbjct: 265 LKRLRI-RGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQ 309


>gi|440717669|ref|ZP_20898151.1| hypothetical protein RBSWK_05211 [Rhodopirellula baltica SWK14]
 gi|436437289|gb|ELP30945.1| hypothetical protein RBSWK_05211 [Rhodopirellula baltica SWK14]
          Length = 442

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/322 (32%), Positives = 157/322 (48%), Gaps = 33/322 (10%)

Query: 42  PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ--ISDGGL 99
           PG++D  M+ + S  ++L  + L+ + +TD     LK    + SLD  F  +  ++D GL
Sbjct: 105 PGIDDAGMENLKSL-ANLKRLTLADTAITDQ---TLKTVGEMTSLDALFLRRTGVTDEGL 160

Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
           E L GLS L ++  R  N I   GM + A +  L+ + LE+      GLV L  L  L+S
Sbjct: 161 ELLTGLSKLRAIDLRNTN-IGDAGMDSLAKIKTLIDVKLEKSKVTDEGLVKLAPL-PLKS 218

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
           +N  +C  I    MK L     L++LQ   SK+ D+ +A LKGL KL  L + GC VT  
Sbjct: 219 INFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDASMAELKGLSKLKRLRIRGCDVTGE 278

Query: 220 ------------------------CLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSL 254
                                    L  +S L ++ +++++ C+L S +G  +  K+  L
Sbjct: 279 GIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRLASPEGIAQLGKLIGL 338

Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
             L L   +  DE L     L NLE LNL S  + DE L  L  +  LK L ++ TQ+G 
Sbjct: 339 TYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTKLKTLNVAGTQLGD 398

Query: 315 SGLRHLSGLTNLESINLSFTGI 336
                L+ L NL+S+N++ T I
Sbjct: 399 DSFLELAKLPNLKSMNVANTSI 420



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 106/396 (26%), Positives = 179/396 (45%), Gaps = 39/396 (9%)

Query: 69  VTDSGLIHLKDCS-NLQSLDFNFCIQISDGGLE----HLRGLSNLTSLSFRRNNAITAQG 123
           +T++G I  KD   N+      F I    GG+E    HL G+ N T  +F     I   G
Sbjct: 57  LTEAGYILTKDDDGNV----VEFSIANQKGGIEESLQHLSGIPNTTEATFN-GPGIDDAG 111

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
           M+    L NL +L L                             ITD  +K +  +T+L 
Sbjct: 112 MENLKSLANLKRLTLADT-------------------------AITDQTLKTVGEMTSLD 146

Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
           +L +  + VTD G+  L GL KL  ++L    +  A +DSL+ + +L  + L + +++D+
Sbjct: 147 ALFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVTDE 206

Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           G  K + +  LK +N  +   I    +  L     LE+L  D   I D  +  L GL  L
Sbjct: 207 GLVKLAPL-PLKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDASMAELKGLSKL 265

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQIT 361
           K L +    V   G++H++G   L    L  + + D  L+ ++ L ++  +++ + R  +
Sbjct: 266 KRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRLAS 325

Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
             G+A L  L GLT+L L+  +  D   A   +  NL  L +    +TD  +  +  ++ 
Sbjct: 326 PEGIAQLGKLIGLTYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTK 385

Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
           L  LN++    L D +   ++ L  L S+NV+N+ I
Sbjct: 386 LKTLNVA-GTQLGDDSFLELAKLPNLKSMNVANTSI 420



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 130/270 (48%), Gaps = 16/270 (5%)

Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
           V +  IA  KG  + +L +L G P T                  N   + D G E    +
Sbjct: 72  VVEFSIANQKGGIEESLQHLSGIPNTTEA-------------TFNGPGIDDAGMENLKSL 118

Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
            +LK L L    ITD+ L  +  +T+L++L L   G+ DEGL  LTGL  L+ ++L +T 
Sbjct: 119 ANLKRLTLADTAITDQTLKTVGEMTSLDALFLRRTGVTDEGLELLTGLSKLRAIDLRNTN 178

Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS 370
           +G +G+  L+ +  L  + L  + ++D  L KLA L  LKS+N +    I    +  L  
Sbjct: 179 IGDAGMDSLAKIKTLIDVKLEKSKVTDEGLVKLAPL-PLKSINFNYCTTINGPTMKMLGQ 237

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
              L +L    ++I D+  A L+    L+ L I G  +T  G++HI    +L    L ++
Sbjct: 238 TPTLENLQGDYSKINDASMAELKGLSKLKRLRIRGCDVTGEGIQHIAGNKALARFEL-RD 296

Query: 431 CNLTDKTLELISGLTGLVSLNVSNSRITSA 460
            ++ D  L++IS L  +  +++S  R+ S 
Sbjct: 297 SSVDDDGLKVISQLPAVTHVDISECRLASP 326



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 110/226 (48%), Gaps = 25/226 (11%)

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
           +E L HL G+ N      +  GI D G+ NL  L NLK L L+DT +    L+ +  +T+
Sbjct: 85  EESLQHLSGIPNTTEATFNGPGIDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTS 144

Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           L+++ L  TG++D  L  L GLS L++++L    I D G+ +L  +  L  + L  +++T
Sbjct: 145 LDALFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVT 204

Query: 386 DSGAAYLR-------NFK-----NLRSLEICGGGLT------------DAGVKHIKDLSS 421
           D G   L        NF      N  ++++ G   T            DA +  +K LS 
Sbjct: 205 DEGLVKLAPLPLKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDASMAELKGLSK 264

Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNH 467
           L  L + + C++T + ++ I+G   L    + +S +   GL+ ++ 
Sbjct: 265 LKRLRI-RGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQ 309


>gi|149174540|ref|ZP_01853166.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
 gi|148846650|gb|EDL60987.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
          Length = 309

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/250 (34%), Positives = 139/250 (55%)

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           + D+ +  L  L+ L+ L +S SKVTD G+ +LK L+ L  + L G PV+ + L     L
Sbjct: 50  LVDAGLVYLGRLSKLRKLDLSGSKVTDDGMVHLKSLKSLREITLHGIPVSDSGLAEFKKL 109

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
            +L  LNL+R +++D G +    + SLK L L   EIT + L HL GL +LE+L L    
Sbjct: 110 SNLEILNLSRTKVTDAGLKHLKSLDSLKELFLTGLEITADGLAHLSGLKSLETLGLSETQ 169

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           I D+ L +L  L  L+ L L DTQ+   GL+ + GLT L+ + L  T I+D  L+ L  +
Sbjct: 170 ITDDALAHLKTLKKLRVLLLRDTQITDEGLKQIKGLTRLQRLWLRNTQITDDGLKYLIKM 229

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
             ++ L L+  QIT+ G++ +  L  +  ++L    ++D     L+  KNL +L I G  
Sbjct: 230 KDMEWLELNDTQITNAGISEIKVLENIVDMNLRNTDVSDKCITSLKKMKNLGTLYIDGTE 289

Query: 408 LTDAGVKHIK 417
           +T+ G+  ++
Sbjct: 290 ITEEGIAKLE 299



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/288 (34%), Positives = 148/288 (51%), Gaps = 25/288 (8%)

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           N+  +  S SK+ D+G+ YL  L KL  L+L G  VT   +  L +L SL  + L+   +
Sbjct: 39  NISQVSFSGSKLVDAGLVYLGRLSKLRKLDLSGSKVTDDGMVHLKSLKSLREITLHGIPV 98

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           SD G  +F K                        L+NLE LNL    + D GL +L  L 
Sbjct: 99  SDSGLAEFKK------------------------LSNLEILNLSRTKVTDAGLKHLKSLD 134

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
           +LK L L+  ++ + GL HLSGL +LE++ LS T I+D +L  L  L  L+ L L   QI
Sbjct: 135 SLKELFLTGLEITADGLAHLSGLKSLETLGLSETQITDDALAHLKTLKKLRVLLLRDTQI 194

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GL  +  LT L  L L   +ITD G  YL   K++  LE+    +T+AG+  IK L 
Sbjct: 195 TDEGLKQIKGLTRLQRLWLRNTQITDDGLKYLIKMKDMEWLELNDTQITNAGISEIKVLE 254

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHA 468
           ++  +NL +N +++DK +  +  +  L +L +  + IT  G+  L  +
Sbjct: 255 NIVDMNL-RNTDVSDKCITSLKKMKNLGTLYIDGTEITEEGIAKLEKS 301



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 127/240 (52%), Gaps = 3/240 (1%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           S L  +DLSGS VTD G++HLK   +L+ +  +  I +SD GL   + LSNL  L+  R 
Sbjct: 62  SKLRKLDLSGSKVTDDGMVHLKSLKSLREITLH-GIPVSDSGLAEFKKLSNLEILNLSRT 120

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             +T  G+K    L +L +L L        GL +L GL  LE+L +     ITD  +  L
Sbjct: 121 K-VTDAGLKHLKSLDSLKELFLTGLEITADGLAHLSGLKSLETLGLSETQ-ITDDALAHL 178

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
             L  L+ L +  +++TD G+  +KGL +L  L L    +T   L  L  +  + +L LN
Sbjct: 179 KTLKKLRVLLLRDTQITDEGLKQIKGLTRLQRLWLRNTQITDDGLKYLIKMKDMEWLELN 238

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             Q+++ G  +   + ++  +NL   +++D+C+  LK + NL +L +D   I +EG+  L
Sbjct: 239 DTQITNAGISEIKVLENIVDMNLRNTDVSDKCITSLKKMKNLGTLYIDGTEITEEGIAKL 298



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 136/260 (52%), Gaps = 3/260 (1%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           V  SGS + D+GL++L   S L+ LD +   +++D G+ HL+ L +L  ++      ++ 
Sbjct: 43  VSFSGSKLVDAGLVYLGRLSKLRKLDLSGS-KVTDDGMVHLKSLKSLREITL-HGIPVSD 100

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
            G+  F  L NL  L+L R      GL +LK L  L+ L +       D  +  LSGL +
Sbjct: 101 SGLAEFKKLSNLEILNLSRTKVTDAGLKHLKSLDSLKELFLTGLEITADG-LAHLSGLKS 159

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
           L++L +S +++TD  +A+LK L+KL +L L    +T   L  +  L  L  L L   Q++
Sbjct: 160 LETLGLSETQITDDALAHLKTLKKLRVLLLRDTQITDEGLKQIKGLTRLQRLWLRNTQIT 219

Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
           DDG +   K+  ++ L L   +IT+  +  +K L N+  +NL +  + D+ + +L  + N
Sbjct: 220 DDGLKYLIKMKDMEWLELNDTQITNAGISEIKVLENIVDMNLRNTDVSDKCITSLKKMKN 279

Query: 302 LKCLELSDTQVGSSGLRHLS 321
           L  L +  T++   G+  L 
Sbjct: 280 LGTLYIDGTEITEEGIAKLE 299


>gi|290973212|ref|XP_002669343.1| predicted protein [Naegleria gruberi]
 gi|284082889|gb|EFC36599.1| predicted protein [Naegleria gruberi]
          Length = 440

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 152/277 (54%), Gaps = 1/277 (0%)

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
           + +L SLNI + N + D   K LS +  L SL I  ++V   G  YL  +++LT LN+  
Sbjct: 142 MKQLTSLNIGY-NRVGDEGAKYLSEMKQLTSLNIGYNRVGIEGAKYLSEMEQLTSLNIGY 200

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
             +    +  +S +  L  LN+++ ++S++G +  S++  L++LN+  NEI DE + +L 
Sbjct: 201 SRIGIEGVKYISEMKQLTSLNISKNEVSNEGAKYLSEMKQLRLLNIYHNEIGDEGVKYLS 260

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
            +  L SL++    IG EG+  ++ +  L  L++S+ ++   G ++LS +  L S+N+ +
Sbjct: 261 EMKQLTSLHIGYNRIGLEGVKLISEMEQLTSLDISENEISDEGAKYLSEMEQLTSLNIDY 320

Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
           + I    ++ ++ +  L SL +   +I   G   ++ +  L  LD+    I+D GA YL 
Sbjct: 321 SRIGLEGVKYISEMKQLTSLTIAYNRIGIKGAKLISEMKQLRLLDISNNEISDEGAKYLS 380

Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
             K L SL I   G+   GVK+I ++  L LL++++N
Sbjct: 381 EMKQLISLYISEIGIGIKGVKYISEMKQLRLLDITRN 417



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 141/270 (52%), Gaps = 1/270 (0%)

Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
           +  +++LT LN+    +    +  +S +  L  LN+   ++ D+G +  S++  L  LN+
Sbjct: 115 ISAMKQLTSLNIYDNGIGDEEIKYISEMKQLTSLNIGYNRVGDEGAKYLSEMKQLTSLNI 174

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
           G+N +  E   +L  +  L SLN+    IG EG+  ++ +  L  L +S  +V + G ++
Sbjct: 175 GYNRVGIEGAKYLSEMEQLTSLNIGYSRIGIEGVKYISEMKQLTSLNISKNEVSNEGAKY 234

Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
           LS +  L  +N+    I D  ++ L+ +  L SL++   +I   G+  ++ +  LT LD+
Sbjct: 235 LSEMKQLRLLNIYHNEIGDEGVKYLSEMKQLTSLHIGYNRIGLEGVKLISEMEQLTSLDI 294

Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
               I+D GA YL   + L SL I    +   GVK+I ++  LT L ++ N  +  K  +
Sbjct: 295 SENEISDEGAKYLSEMEQLTSLNIDYSRIGLEGVKYISEMKQLTSLTIAYN-RIGIKGAK 353

Query: 440 LISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           LIS +  L  L++SN+ I+  G ++L+  +
Sbjct: 354 LISEMKQLRLLDISNNEISDEGAKYLSEMK 383



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 27/158 (17%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+   L S+D+S ++++D G  +L +   L SL+ ++  +I   G++++  +  LTSL+ 
Sbjct: 284 SEMEQLTSLDISENEISDEGAKYLSEMEQLTSLNIDYS-RIGLEGVKYISEMKQLTSLTI 342

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
             N  I  +G K  + +  L  LD+                           N I+D   
Sbjct: 343 AYNR-IGIKGAKLISEMKQLRLLDISN-------------------------NEISDEGA 376

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
           K LS +  L SL IS   +   G+ Y+  +++L LL++
Sbjct: 377 KYLSEMKQLISLYISEIGIGIKGVKYISEMKQLRLLDI 414


>gi|46445970|ref|YP_007335.1| hypothetical protein pc0336 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399611|emb|CAF23060.1| hypothetical protein pc0336 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 602

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 123/322 (38%), Positives = 182/322 (56%), Gaps = 11/322 (3%)

Query: 77  LKDCSN-LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
           LK  SN ++ LDF     ++D  L  L+   NL  L  +R + +T  G+   A L+ L  
Sbjct: 278 LKHFSNEIERLDFLENDYLTDTHLLVLKNCKNLKELYLQRCHNLTDAGLAHLAPLLALQH 337

Query: 136 LDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVT 193
           LDL  C  +   GL +L  LM L+ LN+ +C  +TD+ +  L+ L  L+ L +S C  +T
Sbjct: 338 LDLSECNNLTDAGLAHLTPLMALQHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGCDNLT 397

Query: 194 DSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKI 251
           D+G+A+L  L  L  L L  C  +T A L  L+ L +L YL+LN C +L+D G    + +
Sbjct: 398 DAGLAHLTPLMALQHLGLSACDKLTDAGLAHLTPLVALQYLSLNGCDKLTDVGLAHLTPL 457

Query: 252 GSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD 309
            +L  LNL + +++TD  L HL  L  L+ LNL  C  + D GL +LT L  L+ L+L+ 
Sbjct: 458 VALTHLNLSWCDKLTDAGLAHLTPLVALQHLNLRWCRKLTDAGLAHLTPLVALQHLDLNR 517

Query: 310 -TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA 366
             ++  +GL HL+ L NL  +NLS+   ++D  L  L  L +L+ LNL   R++TD GLA
Sbjct: 518 CPKLTDAGLAHLTSLVNLRHLNLSYCRKLTDVGLAHLTPLVALQHLNLSCCRKLTDAGLA 577

Query: 367 ALTSLTGLTHLDLFGA-RITDS 387
            L SL  L HLDL G  ++TD+
Sbjct: 578 HLASLLALQHLDLSGCDKLTDA 599



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 100/276 (36%), Positives = 154/276 (55%), Gaps = 7/276 (2%)

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
           L    +TD+ L+ LK+C NL+ L    C  ++D GL HL  L  L  L     N +T  G
Sbjct: 291 LENDYLTDTHLLVLKNCKNLKELYLQRCHNLTDAGLAHLAPLLALQHLDLSECNNLTDAG 350

Query: 124 MKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
           +     L+ L  L+L  C  +   GL +L  L+ L+ L++  C+ +TD+ +  L+ L  L
Sbjct: 351 LAHLTPLMALQHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGCDNLTDAGLAHLTPLMAL 410

Query: 183 KSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
           + L +S C K+TD+G+A+L  L  L  L+L GC  +T   L  L+ L +L +LNL+ C +
Sbjct: 411 QHLGLSACDKLTDAGLAHLTPLVALQYLSLNGCDKLTDVGLAHLTPLVALTHLNLSWCDK 470

Query: 240 LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT 297
           L+D G    + + +L+ LNL +  ++TD  L HL  L  L+ L+L+ C  + D GL +LT
Sbjct: 471 LTDAGLAHLTPLVALQHLNLRWCRKLTDAGLAHLTPLVALQHLDLNRCPKLTDAGLAHLT 530

Query: 298 GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS 332
            L NL+ L LS   ++   GL HL+ L  L+ +NLS
Sbjct: 531 SLVNLRHLNLSYCRKLTDVGLAHLTPLVALQHLNLS 566



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 110/290 (37%), Positives = 163/290 (56%), Gaps = 10/290 (3%)

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
           ++E L+    + +TD+ +  L    NLK L +  C  +TD+G+A+L  L  L  L+L  C
Sbjct: 284 EIERLDFLENDYLTDTHLLVLKNCKNLKELYLQRCHNLTDAGLAHLAPLLALQHLDLSEC 343

Query: 215 P-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 271
             +T A L  L+ L +L +LNL+ C+ L+D G    + + +L+ L+L G + +TD  L H
Sbjct: 344 NNLTDAGLAHLTPLMALQHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGCDNLTDAGLAH 403

Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 329
           L  L  L+ L L +C  + D GL +LT L  L+ L L+   ++   GL HL+ L  L  +
Sbjct: 404 LTPLMALQHLGLSACDKLTDAGLAHLTPLVALQYLSLNGCDKLTDVGLAHLTPLVALTHL 463

Query: 330 NLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITD 386
           NLS+   ++D  L  L  L +L+ LNL   R++TD GLA LT L  L HLDL    ++TD
Sbjct: 464 NLSWCDKLTDAGLAHLTPLVALQHLNLRWCRKLTDAGLAHLTPLVALQHLDLNRCPKLTD 523

Query: 387 SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
           +G A+L +  NLR L +     LTD G+ H+  L +L  LNLS    LTD
Sbjct: 524 AGLAHLTSLVNLRHLNLSYCRKLTDVGLAHLTPLVALQHLNLSCCRKLTD 573



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 144/454 (31%), Positives = 235/454 (51%), Gaps = 33/454 (7%)

Query: 3   PRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSV 62
           P  ++Q+ F  L+   CL + + +   +     + L  Y  + +    V+ + G  LL +
Sbjct: 165 PLTLTQKEFIHLL--NCLMDANFKVSEEDIPSFIQLADYYQLTE----VVKNLGEQLLDI 218

Query: 63  DLSGS----DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
             S      + ++  L+ LK+         NF  Q     L++   L+ ++SL   + + 
Sbjct: 219 YKSKKFELFNSSEDSLVELKEV-------LNFARQYQLNTLKNYLELTVVSSL-LNQTSQ 270

Query: 119 ITA--QGMKAFAGLINLVKLD-LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
           +T   + +K F+  I   +LD LE        L+ LK    L+ L ++ C+ +TD+ +  
Sbjct: 271 LTEFEKILKHFSNEIE--RLDFLENDYLTDTHLLVLKNCKNLKELYLQRCHNLTDAGLAH 328

Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYL 233
           L+ L  L+ L +S C+ +TD+G+A+L  L  L  LNL  C  +T A L  L+ L +L YL
Sbjct: 329 LAPLLALQHLDLSECNNLTDAGLAHLTPLMALQHLNLSYCKNLTDAGLAHLTPLVALQYL 388

Query: 234 NLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGD 290
           +L+ C  L+D G    + + +L+ L L   +++TD  L HL  L  L+ L+L+ C  + D
Sbjct: 389 DLSGCDNLTDAGLAHLTPLMALQHLGLSACDKLTDAGLAHLTPLVALQYLSLNGCDKLTD 448

Query: 291 EGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLS 348
            GL +LT L  L  L LS   ++  +GL HL+ L  L+ +NL +   ++D  L  L  L 
Sbjct: 449 VGLAHLTPLVALTHLNLSWCDKLTDAGLAHLTPLVALQHLNLRWCRKLTDAGLAHLTPLV 508

Query: 349 SLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEI-CG 405
           +L+ L+L+   ++TD GLA LTSL  L HL+L +  ++TD G A+L     L+ L + C 
Sbjct: 509 ALQHLDLNRCPKLTDAGLAHLTSLVNLRHLNLSYCRKLTDVGLAHLTPLVALQHLNLSCC 568

Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
             LTDAG+ H+  L +L  L+LS    LTD  LE
Sbjct: 569 RKLTDAGLAHLASLLALQHLDLSGCDKLTDAVLE 602



 Score = 39.7 bits (91), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRH 464
             LTDAG+ H+  L +L  LNLS   NLTD  L  ++ L  L  L++S    +T AGL H
Sbjct: 344 NNLTDAGLAHLTPLMALQHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGCDNLTDAGLAH 403

Query: 465 L 465
           L
Sbjct: 404 L 404


>gi|46447626|ref|YP_008991.1| hypothetical protein pc1992 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401267|emb|CAF24716.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 537

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/288 (36%), Positives = 163/288 (56%), Gaps = 11/288 (3%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT--SLSFRRNNAITAQGMKA 126
           +TD+ L+ LKDC NL+ L+   C  ++D GL HL  L+ L    LSF RN  +T  G+  
Sbjct: 252 LTDAYLLALKDCKNLKMLNLKSCKNLTDAGLAHLTPLTALRRLDLSFCRN--LTDAGLAN 309

Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
              LI L  LDL  C  +   GL +L  L  L  L++  C  +TD+ +  L+ L +L+ L
Sbjct: 310 LTPLIALQHLDLSWCKNLTDAGLAHLTPLGALHYLDLSICGKLTDAGLAHLTPLVDLQHL 369

Query: 186 QIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSD 242
            +  C K++D+G+A+L+ L  L  L+L  C  +T A L  L+ L +L +L+LNRC+ L++
Sbjct: 370 NLRYCQKLSDAGLAHLRSLVTLQHLDLSYCQNLTDAGLAHLARLTALQHLSLNRCKNLTE 429

Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC 300
            G      + +L+ L+L +  ++T++ L   K LT L+ LNL+ C  + D GL +L+ L 
Sbjct: 430 AGLVHLRPLVTLQHLDLSYCQKLTNDGLGLFKSLTALQYLNLNHCQKLTDAGLAHLSPLG 489

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGL 347
            L+ L+L  T +  +GL HL  L  L+ + LS  T ++D  L  L+ L
Sbjct: 490 ALQHLDLWCTNITDAGLAHLKPLGALQYLGLSRCTNLTDAGLAHLSPL 537



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 107/298 (35%), Positives = 171/298 (57%), Gaps = 9/298 (3%)

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
           ++E LN      +TD+ +  L    NLK L + SC  +TD+G+A+L  L  L  L+L  C
Sbjct: 240 EIEELNFSDNVYLTDAYLLALKDCKNLKMLNLKSCKNLTDAGLAHLTPLTALRRLDLSFC 299

Query: 215 P-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVH 271
             +T A L +L+ L +L +L+L+ C+ L+D G    + +G+L  L+L    ++TD  L H
Sbjct: 300 RNLTDAGLANLTPLIALQHLDLSWCKNLTDAGLAHLTPLGALHYLDLSICGKLTDAGLAH 359

Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESI 329
           L  L +L+ LNL  C  + D GL +L  L  L+ L+LS  Q +  +GL HL+ LT L+ +
Sbjct: 360 LTPLVDLQHLNLRYCQKLSDAGLAHLRSLVTLQHLDLSYCQNLTDAGLAHLARLTALQHL 419

Query: 330 NLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITD 386
           +L+    +++  L  L  L +L+ L+L   +++T+ GL    SLT L +L+L    ++TD
Sbjct: 420 SLNRCKNLTEAGLVHLRPLVTLQHLDLSYCQKLTNDGLGLFKSLTALQYLNLNHCQKLTD 479

Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
           +G A+L     L+ L++    +TDAG+ H+K L +L  L LS+  NLTD  L  +S L
Sbjct: 480 AGLAHLSPLGALQHLDLWCTNITDAGLAHLKPLGALQYLGLSRCTNLTDAGLAHLSPL 537



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/265 (36%), Positives = 144/265 (54%), Gaps = 6/265 (2%)

Query: 65  SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
           S  ++TD+GL HL   + L+ LD +FC  ++D GL +L  L  L  L       +T  G+
Sbjct: 273 SCKNLTDAGLAHLTPLTALRRLDLSFCRNLTDAGLANLTPLIALQHLDLSWCKNLTDAGL 332

Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
                L  L  LDL  C ++   GL +L  L+ L+ LN+++C  ++D+ +  L  L  L+
Sbjct: 333 AHLTPLGALHYLDLSICGKLTDAGLAHLTPLVDLQHLNLRYCQKLSDAGLAHLRSLVTLQ 392

Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-L 240
            L +S C  +TD+G+A+L  L  L  L+L  C  +T A L  L  L +L +L+L+ CQ L
Sbjct: 393 HLDLSYCQNLTDAGLAHLARLTALQHLSLNRCKNLTEAGLVHLRPLVTLQHLDLSYCQKL 452

Query: 241 SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
           ++DG   F  + +L+ LNL    ++TD  L HL  L  L+ L+L    I D GL +L  L
Sbjct: 453 TNDGLGLFKSLTALQYLNLNHCQKLTDAGLAHLSPLGALQHLDLWCTNITDAGLAHLKPL 512

Query: 300 CNLKCLELSD-TQVGSSGLRHLSGL 323
             L+ L LS  T +  +GL HLS L
Sbjct: 513 GALQYLGLSRCTNLTDAGLAHLSPL 537



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/244 (34%), Positives = 126/244 (51%), Gaps = 6/244 (2%)

Query: 13  ELVYSRCLTEVSLEAFRD-CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLS-GSDVT 70
           +L + R LT+  L       ALQ L L     + D  +  +   G+ L  +DLS    +T
Sbjct: 295 DLSFCRNLTDAGLANLTPLIALQHLDLSWCKNLTDAGLAHLTPLGA-LHYLDLSICGKLT 353

Query: 71  DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
           D+GL HL    +LQ L+  +C ++SD GL HLR L  L  L       +T  G+   A L
Sbjct: 354 DAGLAHLTPLVDLQHLNLRYCQKLSDAGLAHLRSLVTLQHLDLSYCQNLTDAGLAHLARL 413

Query: 131 INLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
             L  L L RC  +   GLV+L+ L+ L+ L++ +C  +T+  +     LT L+ L ++ 
Sbjct: 414 TALQHLSLNRCKNLTEAGLVHLRPLVTLQHLDLSYCQKLTNDGLGLFKSLTALQYLNLNH 473

Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK 247
           C K+TD+G+A+L  L  L  L+L    +T A L  L  LG+L YL L+RC  L+D G   
Sbjct: 474 CQKLTDAGLAHLSPLGALQHLDLWCTNITDAGLAHLKPLGALQYLGLSRCTNLTDAGLAH 533

Query: 248 FSKI 251
            S +
Sbjct: 534 LSPL 537



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 94/258 (36%), Positives = 141/258 (54%), Gaps = 8/258 (3%)

Query: 216 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK 273
           +T A L +L    +L  LNL  C+ L+D G    + + +L+ L+L F   +TD  L +L 
Sbjct: 252 LTDAYLLALKDCKNLKMLNLKSCKNLTDAGLAHLTPLTALRRLDLSFCRNLTDAGLANLT 311

Query: 274 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINL 331
            L  L+ L+L  C  + D GL +LT L  L  L+LS   ++  +GL HL+ L +L+ +NL
Sbjct: 312 PLIALQHLDLSWCKNLTDAGLAHLTPLGALHYLDLSICGKLTDAGLAHLTPLVDLQHLNL 371

Query: 332 SF-TGISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFGAR-ITDSG 388
            +   +SD  L  L  L +L+ L+L   Q +TD GLA L  LT L HL L   + +T++G
Sbjct: 372 RYCQKLSDAGLAHLRSLVTLQHLDLSYCQNLTDAGLAHLARLTALQHLSLNRCKNLTEAG 431

Query: 389 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
             +LR    L+ L++     LT+ G+   K L++L  LNL+    LTD  L  +S L  L
Sbjct: 432 LVHLRPLVTLQHLDLSYCQKLTNDGLGLFKSLTALQYLNLNHCQKLTDAGLAHLSPLGAL 491

Query: 448 VSLNVSNSRITSAGLRHL 465
             L++  + IT AGL HL
Sbjct: 492 QHLDLWCTNITDAGLAHL 509


>gi|290984426|ref|XP_002674928.1| predicted protein [Naegleria gruberi]
 gi|284088521|gb|EFC42184.1| predicted protein [Naegleria gruberi]
          Length = 612

 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 116/425 (27%), Positives = 200/425 (47%), Gaps = 28/425 (6%)

Query: 66  GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
           G  +    + ++     L SL+    + I D  +E +  L  LTSL +   N I ++G+K
Sbjct: 95  GVKIDSESVTYIGQLKQLTSLEIQ-GMDIDDEHVESMAELKQLTSL-YISGNYIGSEGVK 152

Query: 126 AFAGLIN-LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
             +   N L KL++      + G   +  L +L SL I   + I D+ +  LSGL +L +
Sbjct: 153 IISESFNKLTKLNISANYIDNVGAKYISQLKQLTSLEIACNDSIGDAGIIYLSGLEHLTN 212

Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
           L IS  K+   G  Y+   ++LT LN+  C +    L S+S L  L  L+++  ++S +G
Sbjct: 213 LDISRIKIGSGGAQYIGKFEQLTCLNINTCSIDDKVLQSISQLKKLIVLHISENEISIEG 272

Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
            +  SK+  L  L +  + I  E   ++  L  L  L++    + +EG   +  +  L  
Sbjct: 273 AKYISKLNQLTSLYISESGIRSEQARYISELKQLTYLDVTKNYVREEGAKYIRNMKKLTT 332

Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG------SLRKLAGLSSLKS------ 352
           L +S+  V   G  ++S +T L  +++S   I+         L++L  LS L+S      
Sbjct: 333 LLVSENYVCEQGAEYISEMTQLTKLDISVNNINKKGVFHICKLKQLTELSILESHFDGEG 392

Query: 353 ------------LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
                       LN    ++   G+  ++ L  LT L++   RI+D GA Y+   K L+ 
Sbjct: 393 LEYISELKNLTILNFPYSEMRGVGVKYISQLNQLTCLNIPYNRISDEGAKYISELKQLKE 452

Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
           L I    ++  G  ++ DL +LT L ++ N NL +     IS L  L  L++S++ I+S 
Sbjct: 453 LSISDNSISSEGANYLTDLKNLTKLVITGN-NLGNDGAMHISELKKLTILDISHNSISSE 511

Query: 461 GLRHL 465
           G +HL
Sbjct: 512 GAKHL 516



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 163/335 (48%), Gaps = 2/335 (0%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           +IS  G +++  L+ LTSL +   + I ++  +  + L  L  LD+ +      G   ++
Sbjct: 267 EISIEGAKYISKLNQLTSL-YISESGIRSEQARYISELKQLTYLDVTKNYVREEGAKYIR 325

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
            + KL +L +   N + +   + +S +T L  L IS + +   G+ ++  L++LT L++ 
Sbjct: 326 NMKKLTTLLVSE-NYVCEQGAEYISEMTQLTKLDISVNNINKKGVFHICKLKQLTELSIL 384

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
                   L+ +S L +L  LN    ++   G +  S++  L  LN+ +N I+DE   ++
Sbjct: 385 ESHFDGEGLEYISELKNLTILNFPYSEMRGVGVKYISQLNQLTCLNIPYNRISDEGAKYI 444

Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
             L  L+ L++    I  EG   LT L NL  L ++   +G+ G  H+S L  L  +++S
Sbjct: 445 SELKQLKELSISDNSISSEGANYLTDLKNLTKLVITGNNLGNDGAMHISELKKLTILDIS 504

Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
              IS    + L+ L +L  L +    + + G  +++ L  LTHLD+    I+D G   +
Sbjct: 505 HNSISSEGAKHLSDLKNLTELVIKGNNLGNDGAMSISELKQLTHLDVCDNNISDEGFKAI 564

Query: 393 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
                L  L I    ++  GV+ I+ ++  T +++
Sbjct: 565 SKMNQLTRLSIYENSISGEGVEFIRKMTQSTFIDI 599



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 80/178 (44%), Gaps = 35/178 (19%)

Query: 52  IASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
           I+S+G++ L+       + ++G+++ + G +H+ +   L  LD +    IS  G +HL  
Sbjct: 460 ISSEGANYLTDLKNLTKLVITGNNLGNDGAMHISELKKLTILDISHN-SISSEGAKHLSD 518

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
           L NLT L  + NN +   G  + + L  L  LD+  C                       
Sbjct: 519 LKNLTELVIKGNN-LGNDGAMSISELKQLTHLDV--CD---------------------- 553

Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
            N I+D   K +S +  L  L I  + ++  G+ +++ + + T ++++ C    +C D
Sbjct: 554 -NNISDEGFKAISKMNQLTRLSIYENSISGEGVEFIRKMTQSTFIDIQ-CWSNQSCQD 609


>gi|325182005|emb|CCA16458.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 708

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 121/431 (28%), Positives = 204/431 (47%), Gaps = 36/431 (8%)

Query: 67  SDVTDSGLIHLKD--CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
           SDV DS L  L       +QSLDF++C ++   GL+    L NL   +F     +  + +
Sbjct: 245 SDVDDSWLEALPTHAIEQIQSLDFSYCHRLQFCGLKPQSRLPNLRVANFEGCLYLKPETI 304

Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
           +       L+ L+L  C  I    L +L+ L +L++L++  C  IT+  ++ L+GL  LK
Sbjct: 305 QRLGFSNRLISLNLTGCRLITDKTLYSLRHLFRLQNLHLSGCKWITEKGLQHLNGLFGLK 364

Query: 184 SLQIS---------------------------CSKVTDSGIAYLKGLQKLTLLNLEGCP- 215
            L ++                           CS ++D  + +   L+++  L L+GC  
Sbjct: 365 RLYLARCVNVSNQAFRFFPTSFPNLVELDLSHCS-ISDIALHFTGRLREIHSLMLKGCSR 423

Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
           +T   L  L +L  L  L++  C+      ++++++  LK+    F E     L  +K  
Sbjct: 424 ITTKGLSHLGSLSKLRRLDVRYCKHVAGLSKEWTQLDMLKLACTEFKEADASILATMK-- 481

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFT 334
             L  L+L  C +       ++ L +L  L +++T +    L  L   L  L+ +++S T
Sbjct: 482 -TLHELDLRCCLVAKGCFSFVSHLNSLVRLCVAETALTDESLIMLCKSLEKLQMLDVSCT 540

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            ++D    ++  L  L  L+LD   IT+  L  +  L  L  L+LF A +TD G   L+ 
Sbjct: 541 EVTDSGTMEIEMLGELSELHLDTPGITNRSLERVGKLKKLARLNLFAASVTDEGVEALKR 600

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
              L+ L+IC GG+   GVK +  L  L  LNLSQN  +  +++  +  LT L  LN+SN
Sbjct: 601 LDKLQDLDICSGGVGHRGVKALSQLKRLRSLNLSQNKEIRSQSVVHLEALTKLRFLNLSN 660

Query: 455 SRITSAGLRHL 465
           + ITS+ L +L
Sbjct: 661 TGITSSCLHNL 671



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 106/378 (28%), Positives = 164/378 (43%), Gaps = 89/378 (23%)

Query: 59  LLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           L+S++L+G   +TD  L  L+    LQ+L  + C  I++ GL+HL GL  L  L   R  
Sbjct: 313 LISLNLTGCRLITDKTLYSLRHLFRLQNLHLSGCKWITEKGLQHLNGLFGLKRLYLARCV 372

Query: 118 AITAQGMKAFA-GLINLVKLDLERCT-------------RIHG------------GLVNL 151
            ++ Q  + F     NLV+LDL  C+              IH             GL +L
Sbjct: 373 NVSNQAFRFFPTSFPNLVELDLSHCSISDIALHFTGRLREIHSLMLKGCSRITTKGLSHL 432

Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGL----TNLKSLQISCSKVTDSGIAYLKGLQKLT 207
             L KL  L++++C        K ++GL    T L  L+++C++  ++  + L  ++ L 
Sbjct: 433 GSLSKLRRLDVRYC--------KHVAGLSKEWTQLDMLKLACTEFKEADASILATMKTLH 484

Query: 208 LLNLEGCPVTAACLDSLSALGSLFYL-----------------NLNRCQLSDDGC----- 245
            L+L  C V   C   +S L SL  L                 +L + Q+ D  C     
Sbjct: 485 ELDLRCCLVAKGCFSFVSHLNSLVRLCVAETALTDESLIMLCKSLEKLQMLDVSCTEVTD 544

Query: 246 ---------------------------EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
                                      E+  K+  L  LNL    +TDE +  LK L  L
Sbjct: 545 SGTMEIEMLGELSELHLDTPGITNRSLERVGKLKKLARLNLFAASVTDEGVEALKRLDKL 604

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           + L++ S G+G  G+  L+ L  L+ L LS + ++ S  + HL  LT L  +NLS TGI+
Sbjct: 605 QDLDICSGGVGHRGVKALSQLKRLRSLNLSQNKEIRSQSVVHLEALTKLRFLNLSNTGIT 664

Query: 338 DGSLRKLAGLSSLKSLNL 355
              L  L  L  L+SL++
Sbjct: 665 SSCLHNLFALKELESLSV 682



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 142/338 (42%), Gaps = 55/338 (16%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
           L+ L L +   V+++      +   +L+ +DLS   ++D  L        + SL    C 
Sbjct: 363 LKRLYLARCVNVSNQAFRFFPTSFPNLVELDLSHCSISDIALHFTGRLREIHSLMLKGCS 422

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           +I+  GL HL  LS L  L  R    +   G+      ++++KL    CT       ++ 
Sbjct: 423 RITTKGLSHLGSLSKLRRLDVRYCKHVA--GLSKEWTQLDMLKLA---CTEFKEADASIL 477

Query: 153 GLMK-LESLNIKWC-----------------------NCITDSDMKPL-SGLTNLKSLQI 187
             MK L  L+++ C                         +TD  +  L   L  L+ L +
Sbjct: 478 ATMKTLHELDLRCCLVAKGCFSFVSHLNSLVRLCVAETALTDESLIMLCKSLEKLQMLDV 537

Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
           SC++VTDSG   ++ L +L+ L+L+   +T   L+ +  L  L  LNL    ++D+G E 
Sbjct: 538 SCTEVTDSGTMEIEMLGELSELHLDTPGITNRSLERVGKLKKLARLNLFAASVTDEGVEA 597

Query: 248 F------------------------SKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLN 282
                                    S++  L+ LNL  N EI  + +VHL+ LT L  LN
Sbjct: 598 LKRLDKLQDLDICSGGVGHRGVKALSQLKRLRSLNLSQNKEIRSQSVVHLEALTKLRFLN 657

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
           L + GI    L NL  L  L+ L +    + SS +  L
Sbjct: 658 LSNTGITSSCLHNLFALKELESLSVYGVVLESSQIDEL 695



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 101/207 (48%), Gaps = 5/207 (2%)

Query: 32  ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
           +L  LC+ +   + D+ + ++      L  +D+S ++VTDSG + ++    L  L  +  
Sbjct: 506 SLVRLCVAE-TALTDESLIMLCKSLEKLQMLDVSCTEVTDSGTMEIEMLGELSELHLD-T 563

Query: 92  IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
             I++  LE +  L  L  L+     ++T +G++A   L  L  LD+      H G+  L
Sbjct: 564 PGITNRSLERVGKLKKLARLNLF-AASVTDEGVEALKRLDKLQDLDICSGGVGHRGVKAL 622

Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
             L +L SLN+     I    +  L  LT L+ L +S + +T S +  L  L++L  L++
Sbjct: 623 SQLKRLRSLNLSQNKEIRSQSVVHLEALTKLRFLNLSNTGITSSCLHNLFALKELESLSV 682

Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRC 238
            G  + ++ +D L    +L +L + RC
Sbjct: 683 YGVVLESSQIDELQE--NLPHLKVLRC 707


>gi|307108381|gb|EFN56621.1| hypothetical protein CHLNCDRAFT_57520 [Chlorella variabilis]
          Length = 790

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 148/463 (31%), Positives = 227/463 (49%), Gaps = 57/463 (12%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSG-SDVTD--SGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
           V D  ++ +A +   L ++D++G + VTD  +G   L     L  L+   C  ++D GLE
Sbjct: 338 VGDGVLEAVA-RCRGLRALDMAGCTGVTDEGTGFTQLSRLQQLSELNLKGCYSLADDGLE 396

Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG----LVNLKGLMK 156
            L  L +L +L+ +    +T +G+   +GL  L  L+L+ C  +  G    L  L  L +
Sbjct: 397 LLPTLRSLAALNLQECWQVTDRGLAHLSGLTRLEDLNLQGCRNLANGAGQSLSGLGALHR 456

Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP 215
           L SL ++ C+ + D  +  L GLT+L+ L +S C ++T  G+A L  L+ L  L L+ C 
Sbjct: 457 LTSLCMRGCDRLADGALDFLPGLTSLRQLDLSGCKELTADGLAPLSSLRLLACLRLQHCS 516

Query: 216 --VTAACLDSLSALGSLFYLNLNRC------------------QLSDDGCEKFSKIGSLK 255
               AA L  LS L SL  LNL  C                  QLS +GC        + 
Sbjct: 517 GLRGAAALRPLSTLSSLTALNLGGCTAIHGQSLRALGTLSALRQLSLEGCR------GVV 570

Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD----T 310
           +L+ G   +          L  L SLNL  C  + D GL  +  L  L  L LS+    T
Sbjct: 571 LLDAGLEALAPS-------LHRLTSLNLQGCSTLTDAGLQKMGPLTGLVSLNLSECPSIT 623

Query: 311 QVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL 368
             G++  R    +  L S+ L    G+ D  L  LAGL++L+SLNL   +++ D GLAA+
Sbjct: 624 GAGAAAWR----MPLLASLQLQNSPGVDDAGLAALAGLTALRSLNLKQCKRVGDGGLAAM 679

Query: 369 -TSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLL 425
             +L  LT L L G + +TD+G A L   ++L+ LE+       DAG+  +  LS+L+ L
Sbjct: 680 APALQRLTALCLQGMSEVTDAGVAQLGALRSLQDLELQFAWQFGDAGIAALTRLSALSRL 739

Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLNH 467
           +L  +  +TD +L  +  +T L+SLNV    R+T  G   + H
Sbjct: 740 DLMYSWKITDDSLRSLGRMTSLLSLNVLGCHRLTPGGKAEVAH 782



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 134/457 (29%), Positives = 184/457 (40%), Gaps = 125/457 (27%)

Query: 126 AFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           A A   ++  L+L  C ++    L ++  L  L  ++++ C  +TD  +  L+ L  L  
Sbjct: 174 AAASFPSVQVLELGHCRQLQDWDLADVALLSTLRCVSLRGCEGVTDEGVAQLARLPRLSR 233

Query: 185 LQI-SCSKVTDSGIAYLKGLQKLTLLNL-----------------EGCPVTAACLDSLSA 226
           L + +C K+TD G+A L G+    L  L                  G  + AA       
Sbjct: 234 LVLRNCVKLTDVGLARLAGVSGRELPQLWAPAGPGSPPPVPRLRSPGARLPAAAAPPPCR 293

Query: 227 LGSLFYLNLNRCQLSDD--------------------GCEKFSKIG-----------SLK 255
              L  L+L  C L  +                    GC + S +G            L+
Sbjct: 294 RPPLASLDLAGCVLLTERGFAAAASGLAASLTELLLGGCSRVSTVGDGVLEAVARCRGLR 353

Query: 256 VLNL-GFNEITDE--CLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-T 310
            L++ G   +TDE      L  L  L  LNL  C  + D+GL  L  L +L  L L +  
Sbjct: 354 ALDMAGCTGVTDEGTGFTQLSRLQQLSELNLKGCYSLADDGLELLPTLRSLAALNLQECW 413

Query: 311 QVGSSGLRHLSGLTNLESINL------------SFTG-----------------ISDGSL 341
           QV   GL HLSGLT LE +NL            S +G                 ++DG+L
Sbjct: 414 QVTDRGLAHLSGLTRLEDLNLQGCRNLANGAGQSLSGLGALHRLTSLCMRGCDRLADGAL 473

Query: 342 RKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL---FGARITDSGAAYLRNFKN 397
             L GL+SL+ L+L   +++T  GLA L+SL  L  L L    G R    GAA LR    
Sbjct: 474 DFLPGLTSLRQLDLSGCKELTADGLAPLSSLRLLACLRLQHCSGLR----GAAALRPLST 529

Query: 398 LR------------------------------SLEICGG-GLTDAGVKHI-KDLSSLTLL 425
           L                               SLE C G  L DAG++ +   L  LT L
Sbjct: 530 LSSLTALNLGGCTAIHGQSLRALGTLSALRQLSLEGCRGVVLLDAGLEALAPSLHRLTSL 589

Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAG 461
           NL     LTD  L+ +  LTGLVSLN+S    IT AG
Sbjct: 590 NLQGCSTLTDAGLQKMGPLTGLVSLNLSECPSITGAG 626



 Score = 45.1 bits (105), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 1/115 (0%)

Query: 34  QDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCI 92
           + L L Q   V D  +  +A     L ++ L G S+VTD+G+  L    +LQ L+  F  
Sbjct: 661 RSLNLKQCKRVGDGGLAAMAPALQRLTALCLQGMSEVTDAGVAQLGALRSLQDLELQFAW 720

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
           Q  D G+  L  LS L+ L    +  IT   +++   + +L+ L++  C R+  G
Sbjct: 721 QFGDAGIAALTRLSALSRLDLMYSWKITDDSLRSLGRMTSLLSLNVLGCHRLTPG 775


>gi|290993170|ref|XP_002679206.1| leucine rich repeat protein [Naegleria gruberi]
 gi|284092822|gb|EFC46462.1| leucine rich repeat protein [Naegleria gruberi]
          Length = 527

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 158/326 (48%), Gaps = 16/326 (4%)

Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
           K L+ ++SL      C  +   K +S L  L  L I  S + D G+ Y+  L++L  L++
Sbjct: 93  KKLISMKSLTELIIKCDDEGSAKFISELKQLTRLTIDASHIRDEGVRYISELKQLAYLSV 152

Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE---- 267
               ++   +  L  L  L  L +   ++  +GC+  S++  L  L +  N I DE    
Sbjct: 153 HSNDISDDGVKYLRELKQLTTLIIFSNRVGSEGCKCISELKQLTSLCIDDNHINDEGANN 212

Query: 268 --------CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
                   C+  LK LT   SL +D   I DEG   L+ L  L  L++S   +G+ G ++
Sbjct: 213 RVGSEGCKCISELKQLT---SLCIDDNHINDEGAKYLSELAQLTYLDISSNGLGNEGTKY 269

Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
           +S L  LE +N+S   I D  L     LS L SL L   +I   G   L+ L  LT LD+
Sbjct: 270 ISTLNQLEKLNISQNYIGDEGLEYFGKLSQLTSLELSNNKIGTEGAKYLSELKQLTQLDI 329

Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
              +I D GA Y    K L +L I    + + GVK+I +L  L  L++S+N  + ++ ++
Sbjct: 330 EYNKIGDKGAMYFGELKQLVNLIINNNRIGNDGVKYIGELKQLIYLDISEN-RIGNEGIK 388

Query: 440 LISGLTGLVSLNVSNSRITSAGLRHL 465
            I  L  L  +N+S +RI + G +++
Sbjct: 389 YIGELKQLTDVNISENRIGNEGAKYI 414



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 163/335 (48%), Gaps = 34/335 (10%)

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-------EGCP----- 215
           I D  ++ +S L  L  L +  + ++D G+ YL+ L++LT L +       EGC      
Sbjct: 133 IRDEGVRYISELKQLAYLSVHSNDISDDGVKYLRELKQLTTLIIFSNRVGSEGCKCISEL 192

Query: 216 --VTAACLDS-------------------LSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
             +T+ C+D                    +S L  L  L ++   ++D+G +  S++  L
Sbjct: 193 KQLTSLCIDDNHINDEGANNRVGSEGCKCISELKQLTSLCIDDNHINDEGAKYLSELAQL 252

Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
             L++  N + +E   ++  L  LE LN+    IGDEGL     L  L  LELS+ ++G+
Sbjct: 253 TYLDISSNGLGNEGTKYISTLNQLEKLNISQNYIGDEGLEYFGKLSQLTSLELSNNKIGT 312

Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
            G ++LS L  L  +++ +  I D        L  L +L ++  +I + G+  +  L  L
Sbjct: 313 EGAKYLSELKQLTQLDIEYNKIGDKGAMYFGELKQLVNLIINNNRIGNDGVKYIGELKQL 372

Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
            +LD+   RI + G  Y+   K L  + I    + + G K+I  LS LT L LS N N+ 
Sbjct: 373 IYLDISENRIGNEGIKYIGELKQLTDVNISENRIGNEGAKYIGQLSQLTSLYLSNN-NIG 431

Query: 435 DKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           ++  + IS L  L+ L ++N++I + G ++++  +
Sbjct: 432 NEGAKYISELKELIYLYMNNNKIRNEGAKYISEMK 466



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 188/397 (47%), Gaps = 19/397 (4%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+   L  + +  S + D G+ ++ +   L  L  +    ISD G+++LR L  LT+L  
Sbjct: 118 SELKQLTRLTIDASHIRDEGVRYISELKQLAYLSVH-SNDISDDGVKYLRELKQLTTLII 176

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
             +N + ++G K  + L  L  L    C  I    +N +G      +  + C CI++   
Sbjct: 177 F-SNRVGSEGCKCISELKQLTSL----C--IDDNHINDEGANN--RVGSEGCKCISE--- 224

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
                L  L SL I  + + D G  YL  L +LT L++    +       +S L  L  L
Sbjct: 225 -----LKQLTSLCIDDNHINDEGAKYLSELAQLTYLDISSNGLGNEGTKYISTLNQLEKL 279

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           N+++  + D+G E F K+  L  L L  N+I  E   +L  L  L  L+++   IGD+G 
Sbjct: 280 NISQNYIGDEGLEYFGKLSQLTSLELSNNKIGTEGAKYLSELKQLTQLDIEYNKIGDKGA 339

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
           +    L  L  L +++ ++G+ G++++  L  L  +++S   I +  ++ +  L  L  +
Sbjct: 340 MYFGELKQLVNLIINNNRIGNDGVKYIGELKQLIYLDISENRIGNEGIKYIGELKQLTDV 399

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
           N+   +I + G   +  L+ LT L L    I + GA Y+   K L  L +    + + G 
Sbjct: 400 NISENRIGNEGAKYIGQLSQLTSLYLSNNNIGNEGAKYISELKELIYLYMNNNKIRNEGA 459

Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
           K+I ++  +T L++  N  + ++ ++ IS +  L+ L
Sbjct: 460 KYISEMKQVTQLDIGNNY-IGEEGIKYISEMKQLIHL 495


>gi|330842680|ref|XP_003293301.1| hypothetical protein DICPUDRAFT_158109 [Dictyostelium purpureum]
 gi|325076385|gb|EGC30175.1| hypothetical protein DICPUDRAFT_158109 [Dictyostelium purpureum]
          Length = 684

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 115/388 (29%), Positives = 186/388 (47%), Gaps = 36/388 (9%)

Query: 49  MDVIASQGSSLLSVDLSGSD-VTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
           ++ I S G  +  +DLS    + ++  +H   +    +Q ++F+ CI ++D GLE  +  
Sbjct: 276 LNQILSSGVRVFKLDLSNQSLIVNNDFLHNCFRYLVEVQDVNFSNCINMTDYGLEVFKNE 335

Query: 106 S---NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
               NL  L  R N  +T  G K                        NLK L+ LE L +
Sbjct: 336 KFHRNLRVLDLRHNRNLTDVGCK------------------------NLKNLVNLEELYL 371

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
                I+D  +  L  L NLK+L +S  K+TD+ +  +    KLTLLNL    +T   + 
Sbjct: 372 -GSTSISDLGVAFLKQLVNLKTLDVSRCKITDNAMVTISLFSKLTLLNLSETQITDVAIS 430

Query: 223 SLSA-LGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
           ++   L ++ YL L+ CQ L++      +    +++L++   +I+    VHLK L NL  
Sbjct: 431 NIHQILTNIQYLYLSNCQKLTNKSLFFLTYFSKMRLLSITGTQISLNGFVHLKRLPNLLY 490

Query: 281 LNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
           L L +   + D+ +V L  L  LK L+L+D    +S +  L  L  LE + L+ T + D 
Sbjct: 491 LELPNRYCLNDQTIVYLNSLTKLKKLDLTDYTYITS-IEPLDNLKYLEELLLANTRVGDS 549

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
           S+  +  + SL+ L+LD   IT  G+A L  L  L  L L   +I D    YL   K+LR
Sbjct: 550 SVPAIKKMKSLEVLSLDRTDITSAGVAGLVDL-NLKSLSLMKTKIDDDSINYLSEIKSLR 608

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNL 427
            L I    +T   ++ +KD+++L  L+L
Sbjct: 609 QLNISHNNITHKNIEKLKDITNLNSLDL 636



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 114/229 (49%), Gaps = 11/229 (4%)

Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
           L+D GC+    + +L+ L LG   I+D  +  LK L NL++L++  C I D  +V ++  
Sbjct: 352 LTDVGCKNLKNLVNLEELYLGSTSISDLGVAFLKQLVNLKTLDVSRCKITDNAMVTISLF 411

Query: 300 CNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA 357
             L  L LS+TQ+    + ++   LTN++ + LS    +++ SL  L   S ++ L++  
Sbjct: 412 SKLTLLNLSETQITDVAISNIHQILTNIQYLYLSNCQKLTNKSLFFLTYFSKMRLLSITG 471

Query: 358 RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGGGLTD-AGVKH 415
            QI+  G   L  L  L +L+L     + D    YL +   L+ L+     LTD   +  
Sbjct: 472 TQISLNGFVHLKRLPNLLYLELPNRYCLNDQTIVYLNSLTKLKKLD-----LTDYTYITS 526

Query: 416 IKDLSSLTLLN--LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
           I+ L +L  L   L  N  + D ++  I  +  L  L++  + ITSAG+
Sbjct: 527 IEPLDNLKYLEELLLANTRVGDSSVPAIKKMKSLEVLSLDRTDITSAGV 575



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 101/197 (51%), Gaps = 4/197 (2%)

Query: 267 ECLVHLKGLTNLESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
           E   + K   NL  L+L  +  + D G  NL  L NL+ L L  T +   G+  L  L N
Sbjct: 330 EVFKNEKFHRNLRVLDLRHNRNLTDVGCKNLKNLVNLEELYLGSTSISDLGVAFLKQLVN 389

Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFG-AR 383
           L+++++S   I+D ++  ++  S L  LNL   QITD  ++ +   LT + +L L    +
Sbjct: 390 LKTLDVSRCKITDNAMVTISLFSKLTLLNLSETQITDVAISNIHQILTNIQYLYLSNCQK 449

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
           +T+    +L  F  +R L I G  ++  G  H+K L +L  L L     L D+T+  ++ 
Sbjct: 450 LTNKSLFFLTYFSKMRLLSITGTQISLNGFVHLKRLPNLLYLELPNRYCLNDQTIVYLNS 509

Query: 444 LTGLVSLNVSN-SRITS 459
           LT L  L++++ + ITS
Sbjct: 510 LTKLKKLDLTDYTYITS 526



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 25/133 (18%)

Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
           R +TD G   L +L  L  L L    I+D G A+L+   NL++L++    +TD  +  I 
Sbjct: 350 RNLTDVGCKNLKNLVNLEELYLGSTSISDLGVAFLKQLVNLKTLDVSRCKITDNAMVTIS 409

Query: 418 DLSSLTLLNLSQ------------------------NCN-LTDKTLELISGLTGLVSLNV 452
             S LTLLNLS+                        NC  LT+K+L  ++  + +  L++
Sbjct: 410 LFSKLTLLNLSETQITDVAISNIHQILTNIQYLYLSNCQKLTNKSLFFLTYFSKMRLLSI 469

Query: 453 SNSRITSAGLRHL 465
           + ++I+  G  HL
Sbjct: 470 TGTQISLNGFVHL 482


>gi|421611905|ref|ZP_16053033.1| hypothetical protein RBSH_02839 [Rhodopirellula baltica SH28]
 gi|408497310|gb|EKK01841.1| hypothetical protein RBSH_02839 [Rhodopirellula baltica SH28]
          Length = 455

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 102/320 (31%), Positives = 152/320 (47%), Gaps = 29/320 (9%)

Query: 42  PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
           PG++D  M+ + S    L  + L+ + +TD  L       ++Q L F     ++D GLE 
Sbjct: 118 PGIDDAGMENLTSL-PKLKYLTLADTAITDETLKTAGKLDSVQGL-FLRRTGVTDEGLEL 175

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
           L GLS L ++  R +N I   GM + A +  L  + LE+      GLV L  L  L+S+N
Sbjct: 176 LTGLSKLRAIDLRNSN-IGDAGMDSLAKIKTLADVQLEKSKVTDEGLVKLTSL-PLKSIN 233

Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-- 219
             +C  I    MK L     L++LQ   SK+ D  +A LKGL KL  L + GC VT    
Sbjct: 234 FNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSKLKRLRIRGCDVTGEGI 293

Query: 220 ----------------------CLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSLKV 256
                                  L  +S L ++ Y++++ C+L S +G  +  ++  L  
Sbjct: 294 QHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISECRLASPEGIAQLGELTGLTY 353

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
           L L   +  DE L     L NLE LNL S  + DE L  L  +  LK L ++ TQ+G   
Sbjct: 354 LGLWETKTNDETLSGFGDLINLEELNLKSTSVTDESLPVLMKMIKLKTLNVAGTQLGDDS 413

Query: 317 LRHLSGLTNLESINLSFTGI 336
              L+ L NL+S+N++ T I
Sbjct: 414 FLELAKLPNLKSMNVANTSI 433



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 165/353 (46%), Gaps = 5/353 (1%)

Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
           N+   S         + ++  +G+ N  K           G+ NL  L KL+ L +    
Sbjct: 84  NVVEFSIANQKGGIEESLQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADT- 142

Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
            ITD  +K    L +++ L +  + VTD G+  L GL KL  ++L    +  A +DSL+ 
Sbjct: 143 AITDETLKTAGKLDSVQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNSNIGDAGMDSLAK 202

Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 285
           + +L  + L + +++D+G  K + +  LK +N  +   I    +  L     LE+L  D 
Sbjct: 203 IKTLADVQLEKSKVTDEGLVKLTSL-PLKSINFNYCTTINGPTMKMLGQTPTLENLQGDY 261

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
             I DE +  L GL  LK L +    V   G++H++G   L    L  + + D  L+ ++
Sbjct: 262 SKINDESMAELKGLSKLKRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVIS 321

Query: 346 GLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
            L ++  +++ + R  +  G+A L  LTGLT+L L+  +  D   +   +  NL  L + 
Sbjct: 322 QLPAVTYVDISECRLASPEGIAQLGELTGLTYLGLWETKTNDETLSGFGDLINLEELNLK 381

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
              +TD  +  +  +  L  LN++    L D +   ++ L  L S+NV+N+ I
Sbjct: 382 STSVTDESLPVLMKMIKLKTLNVA-GTQLGDDSFLELAKLPNLKSMNVANTSI 433



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 125/270 (46%), Gaps = 16/270 (5%)

Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
           V +  IA  KG  + +L +L G P T                  N   + D G E  + +
Sbjct: 85  VVEFSIANQKGGIEESLQHLSGIPNTTKA-------------TFNGPGIDDAGMENLTSL 131

Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
             LK L L    ITDE L     L +++ L L   G+ DEGL  LTGL  L+ ++L ++ 
Sbjct: 132 PKLKYLTLADTAITDETLKTAGKLDSVQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNSN 191

Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS 370
           +G +G+  L+ +  L  + L  + ++D  L KL  L  LKS+N +    I    +  L  
Sbjct: 192 IGDAGMDSLAKIKTLADVQLEKSKVTDEGLVKLTSL-PLKSINFNYCTTINGPTMKMLGQ 250

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
              L +L    ++I D   A L+    L+ L I G  +T  G++HI    +L    L ++
Sbjct: 251 TPTLENLQGDYSKINDESMAELKGLSKLKRLRIRGCDVTGEGIQHIAGNKALARFEL-RD 309

Query: 431 CNLTDKTLELISGLTGLVSLNVSNSRITSA 460
            ++ D  L++IS L  +  +++S  R+ S 
Sbjct: 310 SSVDDDGLKVISQLPAVTYVDISECRLASP 339



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 133/292 (45%), Gaps = 4/292 (1%)

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           LSG+ N      +   + D+G+  L  L KL  L L    +T   L +   L S+  L L
Sbjct: 104 LSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADTAITDETLKTAGKLDSVQGLFL 163

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
            R  ++D+G E  + +  L+ ++L  + I D  +  L  +  L  + L+   + DEGLV 
Sbjct: 164 RRTGVTDEGLELLTGLSKLRAIDLRNSNIGDAGMDSLAKIKTLADVQLEKSKVTDEGLVK 223

Query: 296 LTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
           LT L  LK +  +  T +    ++ L     LE++   ++ I+D S+ +L GLS LK L 
Sbjct: 224 LTSLP-LKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSKLKRLR 282

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL-TDAGV 413
           +    +T  G+  +     L   +L  + + D G   +     +  ++I    L +  G+
Sbjct: 283 IRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISECRLASPEGI 342

Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
             + +L+ LT L L +     D+TL     L  L  LN+ ++ +T   L  L
Sbjct: 343 AQLGELTGLTYLGLWE-TKTNDETLSGFGDLINLEELNLKSTSVTDESLPVL 393


>gi|149177419|ref|ZP_01856023.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
 gi|148843752|gb|EDL58111.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
          Length = 375

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/285 (34%), Positives = 154/285 (54%), Gaps = 3/285 (1%)

Query: 85  SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
            +DF    +I D  L+ + GLS+L SL       IT   +++   +  L  LDL  C+  
Sbjct: 76  EVDFR-GTKIDDAALKEIAGLSHLRSL-LLNETPITDAALESVGKVTTLENLDLRNCSLN 133

Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
           +  +  L GL KL++L +   + I D  M  ++ LTNLK+L +    V+  G++ LK L 
Sbjct: 134 NKAISYLTGLSKLKALRLSGNSDIDDDAMADINQLTNLKALMLDFLWVSGDGLSQLKDLN 193

Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
           KL  L L    V    L +L+    L    L++ Q+SD+G   F+KI  L+ ++L  N +
Sbjct: 194 KLEELYLAKTLVDDDGLATLTQFPKLKKTRLSQNQISDEGLAVFAKIPQLEEIDLSENSL 253

Query: 265 -TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
            +D  + HL GL  L+ LNL   G+ D G+  L GL +L+ L L +T++ ++GL++L  +
Sbjct: 254 LSDAGMKHLSGLGKLKKLNLWRVGLTDAGVEPLQGLTSLEWLNLDNTRLTNAGLKYLKDM 313

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
             LE ++L  T +SD  L+ L  L+SLK L L    +T+ G+A L
Sbjct: 314 QKLEFLHLGSTAVSDEGLKHLEPLTSLKELKLTRTAVTEKGVAEL 358



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/271 (32%), Positives = 146/271 (53%), Gaps = 3/271 (1%)

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           I D+ +K ++GL++L+SL ++ + +TD+ +  +  +  L  L+L  C +    +  L+ L
Sbjct: 84  IDDAALKEIAGLSHLRSLLLNETPITDAALESVGKVTTLENLDLRNCSLNNKAISYLTGL 143

Query: 228 GSLFYLNLN-RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
             L  L L+    + DD     +++ +LK L L F  ++ + L  LK L  LE L L   
Sbjct: 144 SKLKALRLSGNSDIDDDAMADINQLTNLKALMLDFLWVSGDGLSQLKDLNKLEELYLAKT 203

Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI-SDGSLRKLA 345
            + D+GL  LT    LK   LS  Q+   GL   + +  LE I+LS   + SD  ++ L+
Sbjct: 204 LVDDDGLATLTQFPKLKKTRLSQNQISDEGLAVFAKIPQLEEIDLSENSLLSDAGMKHLS 263

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
           GL  LK LNL    +TD G+  L  LT L  L+L   R+T++G  YL++ + L  L +  
Sbjct: 264 GLGKLKKLNLWRVGLTDAGVEPLQGLTSLEWLNLDNTRLTNAGLKYLKDMQKLEFLHLGS 323

Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
             ++D G+KH++ L+SL  L L++   +T+K
Sbjct: 324 TAVSDEGLKHLEPLTSLKELKLTRTA-VTEK 353



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 128/241 (53%), Gaps = 3/241 (1%)

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
           G +  ++    ++ D   ++ + +  L+ L L    ITD  L  +  +T LE+L+L +C 
Sbjct: 72  GYVIEVDFRGTKIDDAALKEIAGLSHLRSLLLNETPITDAALESVGKVTTLENLDLRNCS 131

Query: 288 IGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
           + ++ +  LTGL  LK L LS ++ +    +  ++ LTNL+++ L F  +S   L +L  
Sbjct: 132 LNNKAISYLTGLSKLKALRLSGNSDIDDDAMADINQLTNLKALMLDFLWVSGDGLSQLKD 191

Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
           L+ L+ L L    + D GLA LT    L    L   +I+D G A       L  +++   
Sbjct: 192 LNKLEELYLAKTLVDDDGLATLTQFPKLKKTRLSQNQISDEGLAVFAKIPQLEEIDLSEN 251

Query: 407 G-LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
             L+DAG+KH+  L  L  LNL +   LTD  +E + GLT L  LN+ N+R+T+AGL++L
Sbjct: 252 SLLSDAGMKHLSGLGKLKKLNLWR-VGLTDAGVEPLQGLTSLEWLNLDNTRLTNAGLKYL 310

Query: 466 N 466
            
Sbjct: 311 K 311



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 151/309 (48%), Gaps = 19/309 (6%)

Query: 28  FRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLD 87
           FR   + D  L +  G+            S L S+ L+ + +TD+ L  +   + L++LD
Sbjct: 79  FRGTKIDDAALKEIAGL------------SHLRSLLLNETPITDAALESVGKVTTLENLD 126

Query: 88  FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
              C  +++  + +L GLS L +L    N+ I    M     L NL  L L+       G
Sbjct: 127 LRNC-SLNNKAISYLTGLSKLKALRLSGNSDIDDDAMADINQLTNLKALMLDFLWVSGDG 185

Query: 148 LVNLKGLMKLESLNIKWCNCITDSD-MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
           L  LK L KLE L +     + D D +  L+    LK  ++S ++++D G+A    + +L
Sbjct: 186 LSQLKDLNKLEELYL--AKTLVDDDGLATLTQFPKLKKTRLSQNQISDEGLAVFAKIPQL 243

Query: 207 TLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
             ++L E   ++ A +  LS LG L  LNL R  L+D G E    + SL+ LNL    +T
Sbjct: 244 EEIDLSENSLLSDAGMKHLSGLGKLKKLNLWRVGLTDAGVEPLQGLTSLEWLNLDNTRLT 303

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLT 324
           +  L +LK +  LE L+L S  + DEGL +L  L +LK L+L+ T V   G+  L   L 
Sbjct: 304 NAGLKYLKDMQKLEFLHLGSTAVSDEGLKHLEPLTSLKELKLTRTAVTEKGVAELKKKLP 363

Query: 325 NLESINLSF 333
           N E I L +
Sbjct: 364 NTE-IQLKY 371


>gi|46447569|ref|YP_008934.1| hypothetical protein pc1935 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401210|emb|CAF24659.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 504

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 109/320 (34%), Positives = 161/320 (50%), Gaps = 49/320 (15%)

Query: 83  LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
           +++L+F+    ++D  L  L+   NL +L FR+   +TA G+     L+ L  LDL  C 
Sbjct: 227 IEALNFSNQAYLTDVHLLALKDCKNLKALYFRKCPNLTAAGLAYLRPLVALQHLDLNYCY 286

Query: 143 RI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS--CS-KVTDSGIA 198
            +   GL +L  L+ L+ LN+     +TD+ +  LS LT L+ L +S  C+ K+TD+G+A
Sbjct: 287 NLTDAGLAHLAPLVALKHLNLSGHGYLTDAGLAHLSPLTALQHLNLSECCNYKLTDAGLA 346

Query: 199 YLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
           +L+ L  L  LNL  C   T A L  L  L +L +LNL+ C            IG+    
Sbjct: 347 HLRPLVALKYLNLSRCSKFTGAGLAHLRPLTALQHLNLSGC----------GGIGA---- 392

Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSG 316
                 +    L HL+ LT L+ LNL  CG+ D+ L +LT L  L+ L+LS+   +  +G
Sbjct: 393 -----GLASAGLAHLRPLTALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNCWHLTDAG 447

Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
           L HL+ L  L+ +NLS                          Q+T+ GLA L  LT L H
Sbjct: 448 LAHLNPLIALQHLNLS-----------------------KCDQLTNAGLAHLIPLTALQH 484

Query: 377 LDLFG-ARITDSGAAYLRNF 395
           L+L G + +TD G A LR F
Sbjct: 485 LNLSGCSNLTDDGLARLRPF 504



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 106/294 (36%), Positives = 148/294 (50%), Gaps = 38/294 (12%)

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
           K+E+LN      +TD  +  L    NLK+L    C  +T +G+AYL+             
Sbjct: 226 KIEALNFSNQAYLTDVHLLALKDCKNLKALYFRKCPNLTAAGLAYLR------------- 272

Query: 215 PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHL 272
           P+ A           L +L+LN C  L+D G    + + +LK LNL G   +TD  L HL
Sbjct: 273 PLVA-----------LQHLDLNYCYNLTDAGLAHLAPLVALKHLNLSGHGYLTDAGLAHL 321

Query: 273 KGLTNLESLNLDSC---GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLES 328
             LT L+ LNL  C    + D GL +L  L  LK L LS  ++   +GL HL  LT L+ 
Sbjct: 322 SPLTALQHLNLSECCNYKLTDAGLAHLRPLVALKYLNLSRCSKFTGAGLAHLRPLTALQH 381

Query: 329 INLS-----FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG-A 382
           +NLS       G++   L  L  L++L+ LNL    +TD  LA LT L  L +LDL    
Sbjct: 382 LNLSGCGGIGAGLASAGLAHLRPLTALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNCW 441

Query: 383 RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
            +TD+G A+L     L+ L +     LT+AG+ H+  L++L  LNLS   NLTD
Sbjct: 442 HLTDAGLAHLNPLIALQHLNLSKCDQLTNAGLAHLIPLTALQHLNLSGCSNLTD 495



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 97/276 (35%), Positives = 142/276 (51%), Gaps = 37/276 (13%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           +TD  L+ LKDC NL++L F  C  ++  GL +LR                         
Sbjct: 238 LTDVHLLALKDCKNLKALYFRKCPNLTAAGLAYLR------------------------- 272

Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
            L+ L  LDL  C  +   GL +L  L+ L+ LN+     +TD+ +  LS LT L+ L +
Sbjct: 273 PLVALQHLDLNYCYNLTDAGLAHLAPLVALKHLNLSGHGYLTDAGLAHLSPLTALQHLNL 332

Query: 188 S--CS-KVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC----- 238
           S  C+ K+TD+G+A+L+ L  L  LNL  C   T A L  L  L +L +LNL+ C     
Sbjct: 333 SECCNYKLTDAGLAHLRPLVALKYLNLSRCSKFTGAGLAHLRPLTALQHLNLSGCGGIGA 392

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT 297
            L+  G      + +L+ LNL +  +TD+ L HL  L  L+ L+L +C  + D GL +L 
Sbjct: 393 GLASAGLAHLRPLTALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNCWHLTDAGLAHLN 452

Query: 298 GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS 332
            L  L+ L LS   Q+ ++GL HL  LT L+ +NLS
Sbjct: 453 PLIALQHLNLSKCDQLTNAGLAHLIPLTALQHLNLS 488



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 107/285 (37%), Positives = 144/285 (50%), Gaps = 28/285 (9%)

Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK 247
           + +TD  +  LK  + L  L    CP +TAA L  L  L +L +L+LN C  L+D G   
Sbjct: 236 AYLTDVHLLALKDCKNLKALYFRKCPNLTAAGLAYLRPLVALQHLDLNYCYNLTDAGLAH 295

Query: 248 FSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC---GIGDEGLVNLTGLCNLK 303
            + + +LK LNL G   +TD  L HL  LT L+ LNL  C    + D GL +L  L  LK
Sbjct: 296 LAPLVALKHLNLSGHGYLTDAGLAHLSPLTALQHLNLSECCNYKLTDAGLAHLRPLVALK 355

Query: 304 CLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
            L LS  ++   +GL HL  LT L+ +NLS  G         AGL+S             
Sbjct: 356 YLNLSRCSKFTGAGLAHLRPLTALQHLNLSGCGGIG------AGLAS------------- 396

Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSS 421
            GLA L  LT L HL+L    +TD   A+L   + L+ L++     LTDAG+ H+  L +
Sbjct: 397 AGLAHLRPLTALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNCWHLTDAGLAHLNPLIA 456

Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHL 465
           L  LNLS+   LT+  L  +  LT L  LN+S  S +T  GL  L
Sbjct: 457 LQHLNLSKCDQLTNAGLAHLIPLTALQHLNLSGCSNLTDDGLARL 501



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/241 (34%), Positives = 127/241 (52%), Gaps = 11/241 (4%)

Query: 67  SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
            ++T +GL +L+    LQ LD N+C  ++D GL HL  L  L  L+   +  +T  G+  
Sbjct: 261 PNLTAAGLAYLRPLVALQHLDLNYCYNLTDAGLAHLAPLVALKHLNLSGHGYLTDAGLAH 320

Query: 127 FAGLINLVKLDLERCTRIH---GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
            + L  L  L+L  C        GL +L+ L+ L+ LN+  C+  T + +  L  LT L+
Sbjct: 321 LSPLTALQHLNLSECCNYKLTDAGLAHLRPLVALKYLNLSRCSKFTGAGLAHLRPLTALQ 380

Query: 184 SLQIS-CSKV----TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
            L +S C  +      +G+A+L+ L  L  LNL  C VT   L  L+ L +L YL+L+ C
Sbjct: 381 HLNLSGCGGIGAGLASAGLAHLRPLTALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNC 440

Query: 239 -QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVN 295
             L+D G    + + +L+ LNL   +++T+  L HL  LT L+ LNL  C  + D+GL  
Sbjct: 441 WHLTDAGLAHLNPLIALQHLNLSKCDQLTNAGLAHLIPLTALQHLNLSGCSNLTDDGLAR 500

Query: 296 L 296
           L
Sbjct: 501 L 501



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 7/143 (4%)

Query: 67  SDVTDSGLIHLKDCSNLQSLDFNFCIQISDG----GLEHLRGLSNLTSLSFRRNNAITAQ 122
           S  T +GL HL+  + LQ L+ + C  I  G    GL HLR L+ L  L+      +T  
Sbjct: 363 SKFTGAGLAHLRPLTALQHLNLSGCGGIGAGLASAGLAHLRPLTALQHLNLSW-CGVTDD 421

Query: 123 GMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
            +     L  L  LDL  C  +   GL +L  L+ L+ LN+  C+ +T++ +  L  LT 
Sbjct: 422 ELAHLTPLEALQYLDLSNCWHLTDAGLAHLNPLIALQHLNLSKCDQLTNAGLAHLIPLTA 481

Query: 182 LKSLQIS-CSKVTDSGIAYLKGL 203
           L+ L +S CS +TD G+A L+  
Sbjct: 482 LQHLNLSGCSNLTDDGLARLRPF 504



 Score = 46.6 bits (109), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 44/88 (50%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++LS   VTD  L HL     LQ LD + C  ++D GL HL  L  L  L+  + 
Sbjct: 406 TALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNCWHLTDAGLAHLNPLIALQHLNLSKC 465

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI 144
           + +T  G+     L  L  L+L  C+ +
Sbjct: 466 DQLTNAGLAHLIPLTALQHLNLSGCSNL 493


>gi|149175887|ref|ZP_01854505.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
 gi|148845334|gb|EDL59679.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
          Length = 360

 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/219 (37%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
           GLV+LK   +L+ L + W   ++D  +  L  L+ L  L +  + V+ SG+A+L+GL  L
Sbjct: 128 GLVHLKRFHRLKRLML-WNTSVSDDGLVHLKELSQLNHLDLFYTPVSGSGLAHLQGLTNL 186

Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
           T LNL+G  VT A L  ++   +L  LNLN+  +SD G      +  L +L L   ++T 
Sbjct: 187 TWLNLQGTAVTNAGLKQVNCFSALRVLNLNQTSISDAGLVHLRDLPQLIILQLEQTQVTG 246

Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
             L  L  L  L  L L+   I D  + +L     L  LEL DTQ+  +GL HLSGL  L
Sbjct: 247 TGLSELSSLPKLYCLKLNGSLINDSSMSHLKSFKTLIRLELQDTQISDAGLVHLSGLPLL 306

Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
           +++NLS T ++D  L  L GL  LK++ L   Q+T  GL
Sbjct: 307 DALNLSGTQVTDAGLVYLQGLPRLKNVYLKNTQVTSEGL 345



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/238 (36%), Positives = 128/238 (53%), Gaps = 6/238 (2%)

Query: 232 YLNLNRCQLS-----DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
           + NL R  LS     + G     +   LK L L    ++D+ LVHLK L+ L  L+L   
Sbjct: 111 FPNLERISLSGKGLSNTGLVHLKRFHRLKRLMLWNTSVSDDGLVHLKELSQLNHLDLFYT 170

Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
            +   GL +L GL NL  L L  T V ++GL+ ++  + L  +NL+ T ISD  L  L  
Sbjct: 171 PVSGSGLAHLQGLTNLTWLNLQGTAVTNAGLKQVNCFSALRVLNLNQTSISDAGLVHLRD 230

Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
           L  L  L L+  Q+T TGL+ L+SL  L  L L G+ I DS  ++L++FK L  LE+   
Sbjct: 231 LPQLIILQLEQTQVTGTGLSELSSLPKLYCLKLNGSLINDSSMSHLKSFKTLIRLELQDT 290

Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
            ++DAG+ H+  L  L  LNLS    +TD  L  + GL  L ++ + N+++TS GL  
Sbjct: 291 QISDAGLVHLSGLPLLDALNLS-GTQVTDAGLVYLQGLPRLKNVYLKNTQVTSEGLEQ 347



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 84/258 (32%), Positives = 129/258 (50%), Gaps = 27/258 (10%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           + LSG  ++++GL+HLK    L+ L   +   +SD GL HL+ LS L             
Sbjct: 117 ISLSGKGLSNTGLVHLKRFHRLKRLML-WNTSVSDDGLVHLKELSQLN------------ 163

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
                         LDL        GL +L+GL  L  LN++    +T++ +K ++  + 
Sbjct: 164 -------------HLDLFYTPVSGSGLAHLQGLTNLTWLNLQ-GTAVTNAGLKQVNCFSA 209

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
           L+ L ++ + ++D+G+ +L+ L +L +L LE   VT   L  LS+L  L+ L LN   ++
Sbjct: 210 LRVLNLNQTSISDAGLVHLRDLPQLIILQLEQTQVTGTGLSELSSLPKLYCLKLNGSLIN 269

Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
           D          +L  L L   +I+D  LVHL GL  L++LNL    + D GLV L GL  
Sbjct: 270 DSSMSHLKSFKTLIRLELQDTQISDAGLVHLSGLPLLDALNLSGTQVTDAGLVYLQGLPR 329

Query: 302 LKCLELSDTQVGSSGLRH 319
           LK + L +TQV S GL  
Sbjct: 330 LKNVYLKNTQVTSEGLEQ 347



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/203 (36%), Positives = 116/203 (57%), Gaps = 1/203 (0%)

Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
           +++  LVHLK    L+ L L +  + D+GLV+L  L  L  L+L  T V  SGL HL GL
Sbjct: 124 LSNTGLVHLKRFHRLKRLMLWNTSVSDDGLVHLKELSQLNHLDLFYTPVSGSGLAHLQGL 183

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
           TNL  +NL  T +++  L+++   S+L+ LNL+   I+D GL  L  L  L  L L   +
Sbjct: 184 TNLTWLNLQGTAVTNAGLKQVNCFSALRVLNLNQTSISDAGLVHLRDLPQLIILQLEQTQ 243

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
           +T +G + L +   L  L++ G  + D+ + H+K   +L  L L Q+  ++D  L  +SG
Sbjct: 244 VTGTGLSELSSLPKLYCLKLNGSLINDSSMSHLKSFKTLIRLEL-QDTQISDAGLVHLSG 302

Query: 444 LTGLVSLNVSNSRITSAGLRHLN 466
           L  L +LN+S +++T AGL +L 
Sbjct: 303 LPLLDALNLSGTQVTDAGLVYLQ 325



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 135/268 (50%), Gaps = 3/268 (1%)

Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
            +K   ++ES+++   +   DSD+  L+   NL+ + +S   ++++G+ +LK   +L  L
Sbjct: 85  QMKSFDEVESISL---DVTQDSDLVWLNDFPNLERISLSGKGLSNTGLVHLKRFHRLKRL 141

Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
            L    V+   L  L  L  L +L+L    +S  G      + +L  LNL    +T+  L
Sbjct: 142 MLWNTSVSDDGLVHLKELSQLNHLDLFYTPVSGSGLAHLQGLTNLTWLNLQGTAVTNAGL 201

Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
             +   + L  LNL+   I D GLV+L  L  L  L+L  TQV  +GL  LS L  L  +
Sbjct: 202 KQVNCFSALRVLNLNQTSISDAGLVHLRDLPQLIILQLEQTQVTGTGLSELSSLPKLYCL 261

Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
            L+ + I+D S+  L    +L  L L   QI+D GL  L+ L  L  L+L G ++TD+G 
Sbjct: 262 KLNGSLINDSSMSHLKSFKTLIRLELQDTQISDAGLVHLSGLPLLDALNLSGTQVTDAGL 321

Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIK 417
            YL+    L+++ +    +T  G++  K
Sbjct: 322 VYLQGLPRLKNVYLKNTQVTSEGLEQRK 349



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 94/191 (49%), Gaps = 3/191 (1%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           S L  +DL  + V+ SGL HL+  +NL  L+      +++ GL+ +   S L  L+  + 
Sbjct: 160 SQLNHLDLFYTPVSGSGLAHLQGLTNLTWLNLQ-GTAVTNAGLKQVNCFSALRVLNLNQ- 217

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
            +I+  G+     L  L+ L LE+      GL  L  L KL  L +   + I DS M  L
Sbjct: 218 TSISDAGLVHLRDLPQLIILQLEQTQVTGTGLSELSSLPKLYCLKLN-GSLINDSSMSHL 276

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
                L  L++  ++++D+G+ +L GL  L  LNL G  VT A L  L  L  L  + L 
Sbjct: 277 KSFKTLIRLELQDTQISDAGLVHLSGLPLLDALNLSGTQVTDAGLVYLQGLPRLKNVYLK 336

Query: 237 RCQLSDDGCEK 247
             Q++ +G E+
Sbjct: 337 NTQVTSEGLEQ 347



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 67/124 (54%), Gaps = 3/124 (2%)

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
           ++     ++S++LD  Q  D+ L  L     L  + L G  ++++G  +L+ F  L+ L 
Sbjct: 85  QMKSFDEVESISLDVTQ--DSDLVWLNDFPNLERISLSGKGLSNTGLVHLKRFHRLKRLM 142

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
           +    ++D G+ H+K+LS L  L+L     ++   L  + GLT L  LN+  + +T+AGL
Sbjct: 143 LWNTSVSDDGLVHLKELSQLNHLDLFYTP-VSGSGLAHLQGLTNLTWLNLQGTAVTNAGL 201

Query: 463 RHLN 466
           + +N
Sbjct: 202 KQVN 205



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 73/145 (50%), Gaps = 3/145 (2%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           S+L  ++L+ + ++D+GL+HL+D   L  L      Q++  GL  L  L  L  L     
Sbjct: 208 SALRVLNLNQTSISDAGLVHLRDLPQLIILQLE-QTQVTGTGLSELSSLPKLYCLKL-NG 265

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           + I    M        L++L+L+       GLV+L GL  L++LN+     +TD+ +  L
Sbjct: 266 SLINDSSMSHLKSFKTLIRLELQDTQISDAGLVHLSGLPLLDALNLS-GTQVTDAGLVYL 324

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLK 201
            GL  LK++ +  ++VT  G+   K
Sbjct: 325 QGLPRLKNVYLKNTQVTSEGLEQRK 349


>gi|406831735|ref|ZP_11091329.1| hypothetical protein SpalD1_08854 [Schlesneria paludicola DSM
           18645]
          Length = 422

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 117/397 (29%), Positives = 188/397 (47%), Gaps = 33/397 (8%)

Query: 25  LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
           +E   D A   +   + P  N+K + ++ S   +L S+D+S   +T+ GL  L     L+
Sbjct: 45  VERSSDRATVRVSFNEGPRFNEKHLHLLKSL-PNLTSLDVSAIVITEDGLRELGQLKFLR 103

Query: 85  SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL--DLERCT 142
            L  +    I+D GL  L  L +LT L+     ++T +G+K F   +  +++  DLE   
Sbjct: 104 RLVVD-GRSITDEGLMELVDLRSLTELTIS-ATSVTDEGLKQFQSFLPQLRILSDLESVR 161

Query: 143 RI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
           R+   GG +  +   ++  +++       D D++ L  L +L+SL +  + +TD  +  +
Sbjct: 162 RLAGFGGEIE-RSDGRVIRISLHNKPQFGDGDIESLMSLRHLESLDLGGTSITDGALLTV 220

Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
             LQKL  L L    +T   L +L  L  L  L+L+R ++ D G ++  K+  L  L L 
Sbjct: 221 GRLQKLIQLQLPSTRITDRGLKALRNLKQLSILDLSRTRIGDVGLDEIKKL-PLTSLMLH 279

Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
             ++TD  L+ L+ L  ++ L L  C I D GLV L    NL  L L+ T+         
Sbjct: 280 DTQVTDFGLLALQDLKEVQFLGLYKCAITDTGLVTLGRFQNLSELCLNSTR--------- 330

Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
                          I+DG LR +  L  L+ L L   QITD GL  L  L  L  L L 
Sbjct: 331 ---------------ITDGGLRNVGQLRKLRILQLGDSQITDAGLLELRHLNNLVGLVLR 375

Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
           G R+TD     L+ ++NL  +++   G T+AGV  +K
Sbjct: 376 GTRVTDDSVNTLKRYQNLVHIDLRQTGFTEAGVTELK 412



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 116/381 (30%), Positives = 173/381 (45%), Gaps = 13/381 (3%)

Query: 99  LEHLRGLSNLTS------LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           LE L G+   +S      +SF        + +     L NL  LD+        GL  L 
Sbjct: 38  LERLGGIVERSSDRATVRVSFNEGPRFNEKHLHLLKSLPNLTSLDVSAIVITEDGLRELG 97

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG-LQKLTLL-N 210
            L  L  L +     ITD  +  L  L +L  L IS + VTD G+   +  L +L +L +
Sbjct: 98  QLKFLRRLVVDG-RSITDEGLMELVDLRSLTELTISATSVTDEGLKQFQSFLPQLRILSD 156

Query: 211 LEGCPVTAACLDSLS-ALGSLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
           LE     A     +  + G +  ++L N+ Q  D   E    +  L+ L+LG   ITD  
Sbjct: 157 LESVRRLAGFGGEIERSDGRVIRISLHNKPQFGDGDIESLMSLRHLESLDLGGTSITDGA 216

Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
           L+ +  L  L  L L S  I D GL  L  L  L  L+LS T++G  GL  +  L  L S
Sbjct: 217 LLTVGRLQKLIQLQLPSTRITDRGLKALRNLKQLSILDLSRTRIGDVGLDEIKKLP-LTS 275

Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
           + L  T ++D  L  L  L  ++ L L    ITDTGL  L     L+ L L   RITD G
Sbjct: 276 LMLHDTQVTDFGLLALQDLKEVQFLGLYKCAITDTGLVTLGRFQNLSELCLNSTRITDGG 335

Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
              +   + LR L++    +TDAG+  ++ L++L  L L +   +TD ++  +     LV
Sbjct: 336 LRNVGQLRKLRILQLGDSQITDAGLLELRHLNNLVGLVL-RGTRVTDDSVNTLKRYQNLV 394

Query: 449 SLNVSNSRITSAGLRHLNHAR 469
            +++  +  T AG+  L  +R
Sbjct: 395 HIDLRQTGFTEAGVTELKASR 415


>gi|406830023|ref|ZP_11089617.1| hypothetical protein SpalD1_00247 [Schlesneria paludicola DSM
           18645]
          Length = 374

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 115/359 (32%), Positives = 181/359 (50%), Gaps = 50/359 (13%)

Query: 56  GSSLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
           G  ++ V+L  S+    G +H LK  + + SL+ N   +I+D GL+ +R  ++LT L+  
Sbjct: 49  GRPVIYVNLQQSERFGDGYVHALKPFTKMTSLNLN-STKITDSGLKGIRNFTSLTMLTL- 106

Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
                      AF  + ++             GLV LK L  L  L++  C  ITD  + 
Sbjct: 107 -----------AFTKITDV-------------GLVELKDLKNLTRLDLGGCTAITDVGLN 142

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
            +  LT+L SL +S ++ TD G+  L  L+ L+ L L G  +T   L  L  L SL  L 
Sbjct: 143 EIKELTSLASLHLSYTQFTDVGLKELADLKCLSNLELRGTQITDDGLKELGTLTSLTRLT 202

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           L + ++SD G  +   + +L++L+LG  EITDE L  +  L  + SL L    I DEG+ 
Sbjct: 203 LMQTKISDLGLRELKGLRNLQILDLGLTEITDEGLKEIIDLKQIHSLYLFGDEITDEGMQ 262

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
           ++  L NL  L+L  T++ + GL+ +SGL NL+ ++L   G                   
Sbjct: 263 SIGELNNLTELDLIQTEITNEGLKEISGLKNLKKLHLLNDG------------------- 303

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
               +ITD GL  + ++T LT+++L    IT++G   LRN KNL+SL++    +T  GV
Sbjct: 304 ----KITDVGLKEIGTMTQLTNINLGRTGITNAGLKELRNLKNLQSLDVSETEVTSEGV 358



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 103/322 (31%), Positives = 150/322 (46%), Gaps = 44/322 (13%)

Query: 192 VTDSGIAYLKGLQKLTLL--------NLEGCPVTAACLD-----------SLSALGSLFY 232
           V D  +   K ++K+ LL        +L G PV    L            +L     +  
Sbjct: 20  VADDTLDESKAIEKIELLGGKVMRDESLPGRPVIYVNLQQSERFGDGYVHALKPFTKMTS 79

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDE 291
           LNLN  +++D G +      SL +L L F +ITD  LV LK L NL  L+L  C  I D 
Sbjct: 80  LNLNSTKITDSGLKGIRNFTSLTMLTLAFTKITDVGLVELKDLKNLTRLDLGGCTAITDV 139

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS------------------- 332
           GL  +  L +L  L LS TQ    GL+ L+ L  L ++ L                    
Sbjct: 140 GLNEIKELTSLASLHLSYTQFTDVGLKELADLKCLSNLELRGTQITDDGLKELGTLTSLT 199

Query: 333 -----FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
                 T ISD  LR+L GL +L+ L+L   +ITD GL  +  L  +  L LFG  ITD 
Sbjct: 200 RLTLMQTKISDLGLRELKGLRNLQILDLGLTEITDEGLKEIIDLKQIHSLYLFGDEITDE 259

Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
           G   +    NL  L++    +T+ G+K I  L +L  L+L  +  +TD  L+ I  +T L
Sbjct: 260 GMQSIGELNNLTELDLIQTEITNEGLKEISGLKNLKKLHLLNDGKITDVGLKEIGTMTQL 319

Query: 448 VSLNVSNSRITSAGLRHLNHAR 469
            ++N+  + IT+AGL+ L + +
Sbjct: 320 TNINLGRTGITNAGLKELRNLK 341



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/300 (32%), Positives = 162/300 (54%), Gaps = 4/300 (1%)

Query: 133 LVKLDLERCTRIHGGLVN-LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
           ++ ++L++  R   G V+ LK   K+ SLN+     ITDS +K +   T+L  L ++ +K
Sbjct: 52  VIYVNLQQSERFGDGYVHALKPFTKMTSLNLNSTK-ITDSGLKGIRNFTSLTMLTLAFTK 110

Query: 192 VTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
           +TD G+  LK L+ LT L+L GC  +T   L+ +  L SL  L+L+  Q +D G ++ + 
Sbjct: 111 ITDVGLVELKDLKNLTRLDLGGCTAITDVGLNEIKELTSLASLHLSYTQFTDVGLKELAD 170

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
           +  L  L L   +ITD+ L  L  LT+L  L L    I D GL  L GL NL+ L+L  T
Sbjct: 171 LKCLSNLELRGTQITDDGLKELGTLTSLTRLTLMQTKISDLGLRELKGLRNLQILDLGLT 230

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT- 369
           ++   GL+ +  L  + S+ L    I+D  ++ +  L++L  L+L   +IT+ GL  ++ 
Sbjct: 231 EITDEGLKEIIDLKQIHSLYLFGDEITDEGMQSIGELNNLTELDLIQTEITNEGLKEISG 290

Query: 370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 429
                    L   +ITD G   +     L ++ +   G+T+AG+K +++L +L  L++S+
Sbjct: 291 LKNLKKLHLLNDGKITDVGLKEIGTMTQLTNINLGRTGITNAGLKELRNLKNLQSLDVSE 350



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 96/314 (30%), Positives = 162/314 (51%), Gaps = 29/314 (9%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           + + S++L+ + +TDSGL  +++ ++L  L   F  +I+D GL  L+ L NLT       
Sbjct: 75  TKMTSLNLNSTKITDSGLKGIRNFTSLTMLTLAFT-KITDVGLVELKDLKNLT------- 126

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKP 175
                             +LDL  CT I   GL  +K L  L SL++ +    TD  +K 
Sbjct: 127 ------------------RLDLGGCTAITDVGLNEIKELTSLASLHLSYTQ-FTDVGLKE 167

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           L+ L  L +L++  +++TD G+  L  L  LT L L    ++   L  L  L +L  L+L
Sbjct: 168 LADLKCLSNLELRGTQITDDGLKELGTLTSLTRLTLMQTKISDLGLRELKGLRNLQILDL 227

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
              +++D+G ++   +  +  L L  +EITDE +  +  L NL  L+L    I +EGL  
Sbjct: 228 GLTEITDEGLKEIIDLKQIHSLYLFGDEITDEGMQSIGELNNLTELDLIQTEITNEGLKE 287

Query: 296 LTG-LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
           ++G     K   L+D ++   GL+ +  +T L +INL  TGI++  L++L  L +L+SL+
Sbjct: 288 ISGLKNLKKLHLLNDGKITDVGLKEIGTMTQLTNINLGRTGITNAGLKELRNLKNLQSLD 347

Query: 355 LDARQITDTGLAAL 368
           +   ++T  G+ AL
Sbjct: 348 VSETEVTSEGVVAL 361


>gi|290999929|ref|XP_002682532.1| predicted protein [Naegleria gruberi]
 gi|284096159|gb|EFC49788.1| predicted protein [Naegleria gruberi]
          Length = 339

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 153/319 (47%), Gaps = 1/319 (0%)

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
            K L+ ++SL         + ++  LSGL  LKSL I  S++   G+ Y+  L++LT L+
Sbjct: 22  FKKLILMKSLTKLVIRIEEEEEVHHLSGLKQLKSLHIYGSQIRGEGVRYISELKQLTNLD 81

Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
           +    +       LS L  L  LN+    +   G +  S++  L  L +  N I  E   
Sbjct: 82  IRSHNIFHIGAKYLSELKQLTTLNIYGNHIGAKGSKYISELNQLTTLFIAENSIGVEGAK 141

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
           +L  L  L +L +    +G+EGL  ++ +  L  L++S   +G+ G +HL  L  L  +N
Sbjct: 142 YLSELKQLTNLGISVNWLGNEGLAYVSKIKQLTILDISHNDIGAEGGKHLGELKQLTLLN 201

Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
           +S   I D  L  +  L  L +L ++   I   G   L+ L  LT L++   RI D G+ 
Sbjct: 202 ISHNKIQDEGLENIGKLKQLTTLIINQNDIGAEGAQYLSELKQLTFLNISDNRIGDEGSK 261

Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
           Y+   K L  L I    + + G K+++DL  L  LN+  N    D+  + IS L  L  L
Sbjct: 262 YIGELKQLVDLYINDNDIGEEGAKYLRDLKQLIYLNVGGN-EFGDEGAKYISELKQLTKL 320

Query: 451 NVSNSRITSAGLRHLNHAR 469
           +++N+ I   G +HL+  +
Sbjct: 321 DINNNSIGDEGTKHLSEMK 339



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 145/322 (45%), Gaps = 26/322 (8%)

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
           + HL GL  L SL     + I  +G++  + L  L  LD+      H G   L  L +L 
Sbjct: 44  VHHLSGLKQLKSLHIY-GSQIRGEGVRYISELKQLTNLDIRSHNIFHIGAKYLSELKQLT 102

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
           +LNI + N I     K +S L  L +L I+ + +   G  YL  L++LT L +       
Sbjct: 103 TLNI-YGNHIGAKGSKYISELNQLTTLFIAENSIGVEGAKYLSELKQLTNLGI------- 154

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
               S++ LG             ++G    SKI  L +L++  N+I  E   HL  L  L
Sbjct: 155 ----SVNWLG-------------NEGLAYVSKIKQLTILDISHNDIGAEGGKHLGELKQL 197

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
             LN+    I DEGL N+  L  L  L ++   +G+ G ++LS L  L  +N+S   I D
Sbjct: 198 TLLNISHNKIQDEGLENIGKLKQLTTLIINQNDIGAEGAQYLSELKQLTFLNISDNRIGD 257

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
              + +  L  L  L ++   I + G   L  L  L +L++ G    D GA Y+   K L
Sbjct: 258 EGSKYIGELKQLVDLYINDNDIGEEGAKYLRDLKQLIYLNVGGNEFGDEGAKYISELKQL 317

Query: 399 RSLEICGGGLTDAGVKHIKDLS 420
             L+I    + D G KH+ ++ 
Sbjct: 318 TKLDINNNSIGDEGTKHLSEMK 339


>gi|290977067|ref|XP_002671260.1| predicted protein [Naegleria gruberi]
 gi|284084827|gb|EFC38516.1| predicted protein [Naegleria gruberi]
          Length = 378

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 110/372 (29%), Positives = 180/372 (48%), Gaps = 28/372 (7%)

Query: 82  NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
           NLQSLDF+                +    LS+  N  +T  G+KA A L  L K++  R 
Sbjct: 3   NLQSLDFS----------------TTTNELSYNHNYIVT-NGLKAIAELKQLKKINFHRN 45

Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
                GL  +    +L  L+I  CN I     K +S L  LK L I+ + + D G  Y+ 
Sbjct: 46  QIGQNGLQTISQFNQLLCLDIS-CNGIGIEGAKAVSELNQLKELDITANDIGDIGAKYIS 104

Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
            +++LT L +    + +    S+  L  L  LN++   + D+G +  S +  L  L++  
Sbjct: 105 QMKELTKLYVRYNDINSQGASSIGELHQLTKLNISYNNIGDEGMKVISGMKHLTKLSVHN 164

Query: 262 NEI---TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
           N I   + + +  +K LTNL   ++    IG EG+  ++ L  L  L++S  Q+G+ G  
Sbjct: 165 NHINVGSSQFISQMKQLTNL---SISENHIGIEGVETISQLSQLTRLKISSNQIGARGAI 221

Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
            +S L  L  +++    I+D  L+ L  L  L  L  D  QI + G+ ++  L  LT LD
Sbjct: 222 LISKLDKLTKLSIGSNRINDEGLKSLCRLKHLTKLKADFNQIGNEGVKSIIQLKQLTFLD 281

Query: 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD--- 435
           + G  I+  GA ++   K LR+L I    + + G K I +L+ L +L++ +N  L+D   
Sbjct: 282 IGGNNISHKGAQFINQLKQLRTLYISENQIGNKGAKLISELTQLRILHIRKN-ELSDEGV 340

Query: 436 KTLELISGLTGL 447
           K++ L+  LT L
Sbjct: 341 KSILLMKQLTEL 352



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 108/233 (46%), Gaps = 1/233 (0%)

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           L+ N   +  +G +  +++  LK +N   N+I    L  +     L  L++   GIG EG
Sbjct: 16  LSYNHNYIVTNGLKAIAELKQLKKINFHRNQIGQNGLQTISQFNQLLCLDISCNGIGIEG 75

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
              ++ L  LK L+++   +G  G +++S +  L  + + +  I+      +  L  L  
Sbjct: 76  AKAVSELNQLKELDITANDIGDIGAKYISQMKELTKLYVRYNDINSQGASSIGELHQLTK 135

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
           LN+    I D G+  ++ +  LT L +    I    + ++   K L +L I    +   G
Sbjct: 136 LNISYNNIGDEGMKVISGMKHLTKLSVHNNHINVGSSQFISQMKQLTNLSISENHIGIEG 195

Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           V+ I  LS LT L +S N  +  +   LIS L  L  L++ ++RI   GL+ L
Sbjct: 196 VETISQLSQLTRLKISSN-QIGARGAILISKLDKLTKLSIGSNRINDEGLKSL 247


>gi|188586163|ref|YP_001917708.1| hypothetical protein Nther_1542 [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350850|gb|ACB85120.1| Leucine-rich repeat, ribonuclease inhibitor subtype [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 344

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 166/316 (52%), Gaps = 18/316 (5%)

Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
           NLK  +K E L ++    IT+ +++ L+ LT      +S   +   GI Y   LQ+L+L 
Sbjct: 38  NLKAAIK-EELGVE---QITEENIEDLTTLT------VSGEDINIKGIEYAINLQELSL- 86

Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
             +G  +    +++L+ + +L  LNLN  +++D+G E+ ++  +LK ++L   ++TDE  
Sbjct: 87  --QGTKI--EDVNTLAEVDNLEELNLNYTEITDEGIEQLAEADNLKQISLTHTDVTDEGT 142

Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
             L    +LE L L    + D+GL +L    NLK L+L  T V   G  HL+   NLE +
Sbjct: 143 KLLAESESLERLILSGTEVTDDGLEHLIEADNLKKLDLHGTDVTDDGAEHLAETDNLEKL 202

Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
           +L  T ++D  + +L  + +L+ L L   ++TD G+  L     L  L L G  IT+ G 
Sbjct: 203 SLVDTEVTDEGIEQLVKVDNLEVLILGWTEVTDNGVEYLAEADNLEMLHLDGTEITNEGV 262

Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449
            YL    NL  L++    +TD  V  + +  SL  L+L  + ++TD+ ++ ++    L  
Sbjct: 263 KYLAEADNLEELDLKQTKVTD--VNALAETDSLEELDL-WDTDVTDEGVKELAEADSLKV 319

Query: 450 LNVSNSRITSAGLRHL 465
           +N+  + +T+ G+ HL
Sbjct: 320 VNLDETEVTNEGVEHL 335



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 156/301 (51%), Gaps = 10/301 (3%)

Query: 123 GMKAFAGLINLVKLDLERCTR--IHGGLVNLKGL---MKLESLNIKWCNCITDSDMKPLS 177
            +K   G+  + + ++E  T   + G  +N+KG+   + L+ L+++        D+  L+
Sbjct: 42  AIKEELGVEQITEENIEDLTTLTVSGEDINIKGIEYAINLQELSLQGTKI---EDVNTLA 98

Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
            + NL+ L ++ +++TD GI  L     L  ++L    VT      L+   SL  L L+ 
Sbjct: 99  EVDNLEELNLNYTEITDEGIEQLAEADNLKQISLTHTDVTDEGTKLLAESESLERLILSG 158

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
            +++DDG E   +  +LK L+L   ++TD+   HL    NLE L+L    + DEG+  L 
Sbjct: 159 TEVTDDGLEHLIEADNLKKLDLHGTDVTDDGAEHLAETDNLEKLSLVDTEVTDEGIEQLV 218

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
            + NL+ L L  T+V  +G+ +L+   NLE ++L  T I++  ++ LA   +L+ L+L  
Sbjct: 219 KVDNLEVLILGWTEVTDNGVEYLAEADNLEMLHLDGTEITNEGVKYLAEADNLEELDLKQ 278

Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
            ++TD    AL     L  LDL+   +TD G   L    +L+ + +    +T+ GV+H++
Sbjct: 279 TKVTDVN--ALAETDSLEELDLWDTDVTDEGVKELAEADSLKVVNLDETEVTNEGVEHLE 336

Query: 418 D 418
           D
Sbjct: 337 D 337



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 128/241 (53%), Gaps = 7/241 (2%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
           L++L L  Y  + D+ ++ +A +  +L  + L+ +DVTD G   L +  +L+ L  +   
Sbjct: 103 LEELNLN-YTEITDEGIEQLA-EADNLKQISLTHTDVTDEGTKLLAESESLERLILSGT- 159

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           +++D GLEHL    NL  L     + +T  G +  A   NL KL L        G+  L 
Sbjct: 160 EVTDDGLEHLIEADNLKKLDLHGTD-VTDDGAEHLAETDNLEKLSLVDTEVTDEGIEQLV 218

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
            +  LE L + W   +TD+ ++ L+   NL+ L +  +++T+ G+ YL     L  L+L+
Sbjct: 219 KVDNLEVLILGWTE-VTDNGVEYLAEADNLEMLHLDGTEITNEGVKYLAEADNLEELDLK 277

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
              VT   +++L+   SL  L+L    ++D+G ++ ++  SLKV+NL   E+T+E + HL
Sbjct: 278 QTKVTD--VNALAETDSLEELDLWDTDVTDEGVKELAEADSLKVVNLDETEVTNEGVEHL 335

Query: 273 K 273
           +
Sbjct: 336 E 336



 Score = 38.9 bits (89), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 18/127 (14%)

Query: 357 ARQITDTGLAALTSLT---------------GLTHLDLFGARITDSGAAYLRNFKNLRSL 401
             QIT+  +  LT+LT                L  L L G +I D     L    NL  L
Sbjct: 49  VEQITEENIEDLTTLTVSGEDINIKGIEYAINLQELSLQGTKIEDVNT--LAEVDNLEEL 106

Query: 402 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
            +    +TD G++ + +  +L  ++L+ + ++TD+  +L++    L  L +S + +T  G
Sbjct: 107 NLNYTEITDEGIEQLAEADNLKQISLT-HTDVTDEGTKLLAESESLERLILSGTEVTDDG 165

Query: 462 LRHLNHA 468
           L HL  A
Sbjct: 166 LEHLIEA 172


>gi|449132603|ref|ZP_21768618.1| leucine-rich repeat domain protein [Rhodopirellula europaea 6C]
 gi|448888282|gb|EMB18604.1| leucine-rich repeat domain protein [Rhodopirellula europaea 6C]
          Length = 455

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 99/322 (30%), Positives = 153/322 (47%), Gaps = 33/322 (10%)

Query: 42  PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ--ISDGGL 99
           PG++D  M+ + S  + L  + LS + +TD     ++    + +L+  F  +  ++D GL
Sbjct: 118 PGIDDAGMENLTSL-TKLERLILSDTAITDR---TIETAGKMNTLEVLFLRRTGVTDEGL 173

Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
           E L GLS L ++  R  N I   GM   A +  L  + LE+      GLV L  L  L+ 
Sbjct: 174 ELLTGLSKLRAIDLRNTN-IGDAGMDPLAKIKTLADVQLEKSKVTDEGLVKLAPL-PLKY 231

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
           +N  +C  I    MK L     L+ LQ   SK+ D+ +A LKGL KLT L + GC VT  
Sbjct: 232 INFNYCTTINGPTMKMLGQTPTLERLQGDYSKINDASMAELKGLSKLTHLRIRGCDVTGE 291

Query: 220 ------------------------CLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSL 254
                                    L+ +S L ++ +++++ C+L S +G  +  K+  L
Sbjct: 292 GIKHIANNKALAKFELRDSSVDDKGLEVISQLPAVTHVDISECRLASPEGIAQLGKLTGL 351

Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
             L L   +  D  L     L NLE LNL S  + D+ L  L  +  LK L ++ TQ+G 
Sbjct: 352 TYLGLWETKTNDATLEAFGELVNLEELNLKSTSVTDQSLPVLMKMTKLKTLNVAGTQLGD 411

Query: 315 SGLRHLSGLTNLESINLSFTGI 336
                L+ L NL+S+N++ T I
Sbjct: 412 DSFLELAKLPNLKSMNVANTSI 433



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 158/353 (44%), Gaps = 5/353 (1%)

Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
           N+   S         + M+  +G+ N +            G+ NL  L KLE L I    
Sbjct: 84  NVVEFSIANQKGGIEESMQHLSGIPNTLIATFNGPGIDDAGMENLTSLTKLERL-ILSDT 142

Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
            ITD  ++    +  L+ L +  + VTD G+  L GL KL  ++L    +  A +D L+ 
Sbjct: 143 AITDRTIETAGKMNTLEVLFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDPLAK 202

Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 285
           + +L  + L + +++D+G  K + +  LK +N  +   I    +  L     LE L  D 
Sbjct: 203 IKTLADVQLEKSKVTDEGLVKLAPL-PLKYINFNYCTTINGPTMKMLGQTPTLERLQGDY 261

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
             I D  +  L GL  L  L +    V   G++H++    L    L  + + D  L  ++
Sbjct: 262 SKINDASMAELKGLSKLTHLRIRGCDVTGEGIKHIANNKALAKFELRDSSVDDKGLEVIS 321

Query: 346 GLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
            L ++  +++ + R  +  G+A L  LTGLT+L L+  +  D+         NL  L + 
Sbjct: 322 QLPAVTHVDISECRLASPEGIAQLGKLTGLTYLGLWETKTNDATLEAFGELVNLEELNLK 381

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
              +TD  +  +  ++ L  LN++    L D +   ++ L  L S+NV+N+ I
Sbjct: 382 STSVTDQSLPVLMKMTKLKTLNVA-GTQLGDDSFLELAKLPNLKSMNVANTSI 433



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 140/272 (51%), Gaps = 4/272 (1%)

Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
           +  + +L G+    +    G  +  A +++L++L  L  L L+   ++D   E   K+ +
Sbjct: 98  EESMQHLSGIPNTLIATFNGPGIDDAGMENLTSLTKLERLILSDTAITDRTIETAGKMNT 157

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
           L+VL L    +TDE L  L GL+ L +++L +  IGD G+  L  +  L  ++L  ++V 
Sbjct: 158 LEVLFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDPLAKIKTLADVQLEKSKVT 217

Query: 314 SSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
             GL  L+ L  L+ IN ++ T I+  +++ L    +L+ L  D  +I D  +A L  L+
Sbjct: 218 DEGLVKLAPLP-LKYINFNYCTTINGPTMKMLGQTPTLERLQGDYSKINDASMAELKGLS 276

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
            LTHL + G  +T  G  ++ N K L   E+    + D G++ I  L ++T +++S+ C 
Sbjct: 277 KLTHLRIRGCDVTGEGIKHIANNKALAKFELRDSSVDDKGLEVISQLPAVTHVDISE-CR 335

Query: 433 L-TDKTLELISGLTGLVSLNVSNSRITSAGLR 463
           L + + +  +  LTGL  L +  ++   A L 
Sbjct: 336 LASPEGIAQLGKLTGLTYLGLWETKTNDATLE 367



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 151/360 (41%), Gaps = 54/360 (15%)

Query: 71  DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
           +  + HL    N     FN    I D G+E+L  L+ L  L    + AIT + ++    +
Sbjct: 98  EESMQHLSGIPNTLIATFN-GPGIDDAGMENLTSLTKLERLILS-DTAITDRTIETAGKM 155

Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
             L  L L R      GL  L GL KL +++++  N I D+ M PL+ +  L  +Q+  S
Sbjct: 156 NTLEVLFLRRTGVTDEGLELLTGLSKLRAIDLRNTN-IGDAGMDPLAKIKTLADVQLEKS 214

Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF-S 249
           KVTD G+  L  L                          L Y+N N C   +    K   
Sbjct: 215 KVTDEGLVKLAPL-------------------------PLKYINFNYCTTINGPTMKMLG 249

Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
           +  +L+ L   +++I D  +  LKGL+ L  L +  C +  EG+ ++     L   EL D
Sbjct: 250 QTPTLERLQGDYSKINDASMAELKGLSKLTHLRIRGCDVTGEGIKHIANNKALAKFELRD 309

Query: 310 TQVGSSGLRHLSGLTNLESINLS---------------FTGIS----------DGSLRKL 344
           + V   GL  +S L  +  +++S                TG++          D +L   
Sbjct: 310 SSVDDKGLEVISQLPAVTHVDISECRLASPEGIAQLGKLTGLTYLGLWETKTNDATLEAF 369

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
             L +L+ LNL +  +TD  L  L  +T L  L++ G ++ D     L    NL+S+ + 
Sbjct: 370 GELVNLEELNLKSTSVTDQSLPVLMKMTKLKTLNVAGTQLGDDSFLELAKLPNLKSMNVA 429



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 9/204 (4%)

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
           +E + HL G+ N      +  GI D G+ NLT L  L+ L LSDT +    +     +  
Sbjct: 98  EESMQHLSGIPNTLIATFNGPGIDDAGMENLTSLTKLERLILSDTAITDRTIETAGKMNT 157

Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           LE + L  TG++D  L  L GLS L++++L    I D G+  L  +  L  + L  +++T
Sbjct: 158 LEVLFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDPLAKIKTLADVQLEKSKVT 217

Query: 386 DSG----AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
           D G    A     + N        G      +K +    +L  L       + D ++  +
Sbjct: 218 DEGLVKLAPLPLKYINFNYCTTING----PTMKMLGQTPTLERLQ-GDYSKINDASMAEL 272

Query: 442 SGLTGLVSLNVSNSRITSAGLRHL 465
            GL+ L  L +    +T  G++H+
Sbjct: 273 KGLSKLTHLRIRGCDVTGEGIKHI 296


>gi|329906145|ref|ZP_08274368.1| hypothetical protein IMCC9480_2835 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547327|gb|EGF32161.1| hypothetical protein IMCC9480_2835 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 518

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 164/310 (52%), Gaps = 10/310 (3%)

Query: 54  SQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
            Q  +L  +DL+  + + ++ L+HL    +LQ L+ + C Q++D G+ HL   S L  L 
Sbjct: 186 PQMPALQVLDLTACTTIAEANLVHLAKLPDLQQLNLSSCQQLTDAGVAHLPLASTLQHLD 245

Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
                 +T  G++  + L +L  LD+  C  + G  +    +MK  SLN  +C   +D+ 
Sbjct: 246 LSGCQQVTDAGLRGLSALRSLQHLDVHSCRLVTGATLGDFAVMK--SLNAGFCRRFSDAG 303

Query: 173 MKPLSGLTNLKSLQIS-CSKVTDSGIAY-LKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           +  ++G+ +L+ L+I+ C  +T   +A  L  L +L  LN  G P++ A L +L A GSL
Sbjct: 304 LAAVAGMHDLQQLEITHCVALTRDALATCLPQLTQLQTLNASGTPLSDAPLQALFAQGSL 363

Query: 231 FYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-G 287
             L L  C+ L++ G  + +   +L  L+L     +  + L  L   T LE+L+L  C G
Sbjct: 364 QQLVLQHCRALTEPGLAQLATSPALVSLDLRSCRGVVGDALPALGRQTALETLDLSRCSG 423

Query: 288 IGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLA 345
           +  + L +   L  L+ L L    ++  +GL HL  L  L++++L+  G ++DG+LR++A
Sbjct: 424 VTGDDLRHFQSLSKLQTLRLVGCGRINDAGLAHLQALPALKTLDLTDCGYLTDGALRRIA 483

Query: 346 GLSSLKSLNL 355
              +L+ L++
Sbjct: 484 HFPALEKLHI 493



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 135/483 (27%), Positives = 213/483 (44%), Gaps = 104/483 (21%)

Query: 58  SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG------------LE---- 100
           S+  ++LSG + +TD+GL HL    +L+ +D   CIQ++D G            LE    
Sbjct: 43  SVRRLELSGNTRLTDAGLAHLAGLLSLEHVDLRSCIQVTDAGLATLAALPALHTLELAEQ 102

Query: 101 ------HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE-RCTRIHGGLVNLKG 153
                  L  +  L  L+ +R   IT   ++A A   NL  L++  R       L +L+ 
Sbjct: 103 RDASGAALAQMPQLRHLTLQRCQGITPAALEAVANQANLQHLEISLRRNMTDDELASLRP 162

Query: 154 LMKLESLNIK------------W-------------CNCITDSDMKPLSGLTNLKSLQI- 187
           L++L  L++             W             C  I ++++  L+ L +L+ L + 
Sbjct: 163 LLQLRHLSLNGSSGFSGSGLEDWPQMPALQVLDLTACTTIAEANLVHLAKLPDLQQLNLS 222

Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
           SC ++TD+G+A+L     L  L+L GC  VT A L  LSAL SL +L+++ C+L      
Sbjct: 223 SCQQLTDAGVAHLPLASTLQHLDLSGCQQVTDAGLRGLSALRSLQHLDVHSCRLVTGA-- 280

Query: 247 KFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
                  +K LN GF    +D  L  + G+ +L+ L +  C       V LT      C 
Sbjct: 281 TLGDFAVMKSLNAGFCRRFSDAGLAAVAGMHDLQQLEITHC-------VALTRDALATC- 332

Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTG 364
                         L  LT L+++N S T +SD  L+ L    SL+ L L   R +T+ G
Sbjct: 333 --------------LPQLTQLQTLNASGTPLSDAPLQALFAQGSLQQLVLQHCRALTEPG 378

Query: 365 LAALTSLTGLTHLDLFGAR--ITDSGAAY---------------------LRNFKN---L 398
           LA L +   L  LDL   R  + D+  A                      LR+F++   L
Sbjct: 379 LAQLATSPALVSLDLRSCRGVVGDALPALGRQTALETLDLSRCSGVTGDDLRHFQSLSKL 438

Query: 399 RSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
           ++L + G G + DAG+ H++ L +L  L+L+    LTD  L  I+    L  L++ N  +
Sbjct: 439 QTLRLVGCGRINDAGLAHLQALPALKTLDLTDCGYLTDGALRRIAHFPALEKLHIRNCHL 498

Query: 458 TSA 460
            S 
Sbjct: 499 ISP 501



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 3/133 (2%)

Query: 14  LVYSRCLTEVSLEAFR-DCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTD 71
           L + R LTE  L       AL  L L    GV    +  +  Q ++L ++DLS  S VT 
Sbjct: 368 LQHCRALTEPGLAQLATSPALVSLDLRSCRGVVGDALPALGRQ-TALETLDLSRCSGVTG 426

Query: 72  SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
             L H +  S LQ+L    C +I+D GL HL+ L  L +L       +T   ++  A   
Sbjct: 427 DDLRHFQSLSKLQTLRLVGCGRINDAGLAHLQALPALKTLDLTDCGYLTDGALRRIAHFP 486

Query: 132 NLVKLDLERCTRI 144
            L KL +  C  I
Sbjct: 487 ALEKLHIRNCHLI 499


>gi|149918767|ref|ZP_01907254.1| hypothetical protein PPSIR1_31833 [Plesiocystis pacifica SIR-1]
 gi|149820368|gb|EDM79784.1| hypothetical protein PPSIR1_31833 [Plesiocystis pacifica SIR-1]
          Length = 541

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/243 (34%), Positives = 118/243 (48%), Gaps = 2/243 (0%)

Query: 165 CNC--ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
           C+C    D  +  L  L  L+ L++  S VT +G+ +L     L  L L GC + +    
Sbjct: 294 CDCPRFGDRGLFMLRYLEGLQVLELERSAVTSAGLVHLAENPALEDLTLRGCDLDSEGFT 353

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
           +L+AL  L  L +    L D   E    + SL+ L LG +   D     L  L NLE L+
Sbjct: 354 ALAALPRLRRLIVGPASLLDGKAEGLGLLVSLRELELGLDGFGDRAAQELAPLVNLERLD 413

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
           L +  + DEGL +L G+  L+ LEL  T+V   GL HL GL+ LE + L  T + D  + 
Sbjct: 414 LGNTAVSDEGLEHLAGMVRLRELELHHTRVTRHGLEHLQGLSALEILELDHTDVVDEGVA 473

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
            LA L +L+ L LD   ITD G+A L  L+ L  L+L    +T  G   L     L  + 
Sbjct: 474 HLAKLGALRELRLDNTLITDVGVAHLAKLSDLERLNLANTVVTSEGVEVLSALPRLEVVN 533

Query: 403 ICG 405
           + G
Sbjct: 534 LAG 536



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 138/307 (44%), Gaps = 24/307 (7%)

Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS---------------- 188
           H  ++ +     L+SL +     +T+  + PL GL +L  ++ S                
Sbjct: 230 HNTMLRVAKAKSLQSLAV-IDTALTNYSLHPLKGLDHLHRIEWSGQGWSNTSPQYLRDLP 288

Query: 189 -------CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
                  C +  D G+  L+ L+ L +L LE   VT+A L  L+   +L  L L  C L 
Sbjct: 289 IDELICDCPRFGDRGLFMLRYLEGLQVLELERSAVTSAGLVHLAENPALEDLTLRGCDLD 348

Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
            +G    + +  L+ L +G   + D     L  L +L  L L   G GD     L  L N
Sbjct: 349 SEGFTALAALPRLRRLIVGPASLLDGKAEGLGLLVSLRELELGLDGFGDRAAQELAPLVN 408

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
           L+ L+L +T V   GL HL+G+  L  + L  T ++   L  L GLS+L+ L LD   + 
Sbjct: 409 LERLDLGNTAVSDEGLEHLAGMVRLRELELHHTRVTRHGLEHLQGLSALEILELDHTDVV 468

Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
           D G+A L  L  L  L L    ITD G A+L    +L  L +    +T  GV+ +  L  
Sbjct: 469 DEGVAHLAKLGALRELRLDNTLITDVGVAHLAKLSDLERLNLANTVVTSEGVEVLSALPR 528

Query: 422 LTLLNLS 428
           L ++NL+
Sbjct: 529 LEVVNLA 535



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 139/285 (48%), Gaps = 25/285 (8%)

Query: 98  GLEHL-------RGLSNLTSLSFRRNNAITA----------QGMKAFAGLINLVKLDLER 140
           GL+HL       +G SN TS  + R+  I            +G+     L  L  L+LER
Sbjct: 262 GLDHLHRIEWSGQGWSN-TSPQYLRDLPIDELICDCPRFGDRGLFMLRYLEGLQVLELER 320

Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD---SGI 197
                 GLV+L     LE L ++ C+  ++     L+ L  L+ L +  + + D    G+
Sbjct: 321 SAVTSAGLVHLAENPALEDLTLRGCDLDSEG-FTALAALPRLRRLIVGPASLLDGKAEGL 379

Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
             L  L++L  L L+G    AA    L+ L +L  L+L    +SD+G E  + +  L+ L
Sbjct: 380 GLLVSLRELE-LGLDGFGDRAA--QELAPLVNLERLDLGNTAVSDEGLEHLAGMVRLREL 436

Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
            L    +T   L HL+GL+ LE L LD   + DEG+ +L  L  L+ L L +T +   G+
Sbjct: 437 ELHHTRVTRHGLEHLQGLSALEILELDHTDVVDEGVAHLAKLGALRELRLDNTLITDVGV 496

Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
            HL+ L++LE +NL+ T ++   +  L+ L  L+ +NL   +  D
Sbjct: 497 AHLAKLSDLERLNLANTVVTSEGVEVLSALPRLEVVNLAGTRARD 541



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 115/251 (45%), Gaps = 27/251 (10%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           ++L  S VT +GL+HL +   L+ L    C                           + +
Sbjct: 316 LELERSAVTSAGLVHLAENPALEDLTLRGC--------------------------DLDS 349

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
           +G  A A L  L +L +   + + G    L  L+ L  L +   +   D   + L+ L N
Sbjct: 350 EGFTALAALPRLRRLIVGPASLLDGKAEGLGLLVSLRELELG-LDGFGDRAAQELAPLVN 408

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
           L+ L +  + V+D G+ +L G+ +L  L L    VT   L+ L  L +L  L L+   + 
Sbjct: 409 LERLDLGNTAVSDEGLEHLAGMVRLRELELHHTRVTRHGLEHLQGLSALEILELDHTDVV 468

Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
           D+G    +K+G+L+ L L    ITD  + HL  L++LE LNL +  +  EG+  L+ L  
Sbjct: 469 DEGVAHLAKLGALRELRLDNTLITDVGVAHLAKLSDLERLNLANTVVTSEGVEVLSALPR 528

Query: 302 LKCLELSDTQV 312
           L+ + L+ T+ 
Sbjct: 529 LEVVNLAGTRA 539



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 139/338 (41%), Gaps = 34/338 (10%)

Query: 156 KLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG- 213
           +L +L I  C     + +      L  L+ + I    VT + ++ L GL  L L  +   
Sbjct: 122 RLTALRISGCQGAVHAGLSAFGARLRELELVDIELDAVTVARLSQLHGLDTLILTRVRAE 181

Query: 214 -----------CP--VTAACLDSLSALGSLFYLNLNRCQLSDDGCE-------KFSKIGS 253
                       P  VT   LD  SA+  L  L  +   L  +G         + +K  S
Sbjct: 182 AEALNPLARKISPSTVTLRELDKDSAVVELVTLLRDLHHLRLEGAWVGHNTMLRVAKAKS 241

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD---- 309
           L+ L +    +T+  L  LKGL +L  +     G  +      T    L+ L + +    
Sbjct: 242 LQSLAVIDTALTNYSLHPLKGLDHLHRIEWSGQGWSN------TSPQYLRDLPIDELICD 295

Query: 310 -TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
             + G  GL  L  L  L+ + L  + ++   L  LA   +L+ L L    +   G  AL
Sbjct: 296 CPRFGDRGLFMLRYLEGLQVLELERSAVTSAGLVHLAENPALEDLTLRGCDLDSEGFTAL 355

Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
            +L  L  L +  A + D  A  L    +LR LE+   G  D   + +  L +L  L+L 
Sbjct: 356 AALPRLRRLIVGPASLLDGKAEGLGLLVSLRELELGLDGFGDRAAQELAPLVNLERLDLG 415

Query: 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
            N  ++D+ LE ++G+  L  L + ++R+T  GL HL 
Sbjct: 416 -NTAVSDEGLEHLAGMVRLRELELHHTRVTRHGLEHLQ 452



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 84/193 (43%), Gaps = 44/193 (22%)

Query: 22  EVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCS 81
           E+ L+ F D A Q+L     P VN             L  +DL  + V+D GL HL    
Sbjct: 389 ELGLDGFGDRAAQELA----PLVN-------------LERLDLGNTAVSDEGLEHLAGMV 431

Query: 82  NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
            L+ L+ +   +++  GLEHL+GLS L  L     + +         G+ +L KL   R 
Sbjct: 432 RLRELELHHT-RVTRHGLEHLQGLSALEILELDHTDVVD-------EGVAHLAKLGALRE 483

Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
            R+   L                   ITD  +  L+ L++L+ L ++ + VT  G+  L 
Sbjct: 484 LRLDNTL-------------------ITDVGVAHLAKLSDLERLNLANTVVTSEGVEVLS 524

Query: 202 GLQKLTLLNLEGC 214
            L +L ++NL G 
Sbjct: 525 ALPRLEVVNLAGT 537


>gi|290974552|ref|XP_002670009.1| predicted protein [Naegleria gruberi]
 gi|284083563|gb|EFC37265.1| predicted protein [Naegleria gruberi]
          Length = 445

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 146/296 (49%), Gaps = 1/296 (0%)

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
           D K L  L  L  L I  + + + G  Y+  +Q L +LN+ G  +    +  +S +  L 
Sbjct: 55  DCKKLGLLKQLTQLDIDGNNIDEEGAKYISEMQYLAILNMLGNNIGNEGVKYISGMKQLT 114

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
           +LN++   +  DG +   ++  L  LN+G N I DE    +  +T L  L +  CGI  E
Sbjct: 115 HLNVSENNIGLDGVKYIVEMKQLTHLNIGQNSIGDEGAKLIGEMTQLLDLCIFYCGISSE 174

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
           G+ +++ L  L  L +S   +     +++SG+  L  + +    I D   + L  +  L 
Sbjct: 175 GIKHISKLDKLTDLNISSNMLYDDSTKYISGMNQLTYLRIHDNNIGDEGAKFLGKMKQLT 234

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
            +N+   ++T  G+  LT L  LT +D+    I D+GA Y+   K L +L++    + + 
Sbjct: 235 GINIWRNELTAEGVKFLTGLDKLTEIDISSNNIGDNGAKYISEMKQLTNLDVSDNNIGEE 294

Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNH 467
           G K+I ++  LT+L L +N N+  +  + IS L  L  L++S + I   G ++++ 
Sbjct: 295 GAKYIGNMKQLTILTLWKN-NIRGEGAKYISKLEKLTELDISENHIDEKGAKYISE 349



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 152/304 (50%), Gaps = 1/304 (0%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N I +   K +S +  L  L +  + + + G+ Y+ G+++LT LN+    +    +  + 
Sbjct: 73  NNIDEEGAKYISEMQYLAILNMLGNNIGNEGVKYISGMKQLTHLNVSENNIGLDGVKYIV 132

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            +  L +LN+ +  + D+G +   ++  L  L + +  I+ E + H+  L  L  LN+ S
Sbjct: 133 EMKQLTHLNIGQNSIGDEGAKLIGEMTQLLDLCIFYCGISSEGIKHISKLDKLTDLNISS 192

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
             + D+    ++G+  L  L + D  +G  G + L  +  L  IN+    ++   ++ L 
Sbjct: 193 NMLYDDSTKYISGMNQLTYLRIHDNNIGDEGAKFLGKMKQLTGINIWRNELTAEGVKFLT 252

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
           GL  L  +++ +  I D G   ++ +  LT+LD+    I + GA Y+ N K L  L +  
Sbjct: 253 GLDKLTEIDISSNNIGDNGAKYISEMKQLTNLDVSDNNIGEEGAKYIGNMKQLTILTLWK 312

Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
             +   G K+I  L  LT L++S+N ++ +K  + IS ++ L +L++S + I + G +++
Sbjct: 313 NNIRGEGAKYISKLEKLTELDISEN-HIDEKGAKYISEMSQLNALDISVNIIGNQGAKYI 371

Query: 466 NHAR 469
              +
Sbjct: 372 KEMK 375



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 175/395 (44%), Gaps = 29/395 (7%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
             L  +D+ G+++ + G  ++ +   L  L+      I + G++++ G+  LT L+   N
Sbjct: 63  KQLTQLDIDGNNIDEEGAKYISEMQYLAILNM-LGNNIGNEGVKYISGMKQLTHLNVSEN 121

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N I   G+K    +  L  L++ +                         N I D   K +
Sbjct: 122 N-IGLDGVKYIVEMKQLTHLNIGQ-------------------------NSIGDEGAKLI 155

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
             +T L  L I    ++  GI ++  L KLT LN+    +       +S +  L YL ++
Sbjct: 156 GEMTQLLDLCIFYCGISSEGIKHISKLDKLTDLNISSNMLYDDSTKYISGMNQLTYLRIH 215

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
              + D+G +   K+  L  +N+  NE+T E +  L GL  L  +++ S  IGD G   +
Sbjct: 216 DNNIGDEGAKFLGKMKQLTGINIWRNELTAEGVKFLTGLDKLTEIDISSNNIGDNGAKYI 275

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
           + +  L  L++SD  +G  G +++  +  L  + L    I     + ++ L  L  L++ 
Sbjct: 276 SEMKQLTNLDVSDNNIGEEGAKYIGNMKQLTILTLWKNNIRGEGAKYISKLEKLTELDIS 335

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
              I + G   ++ ++ L  LD+    I + GA Y++  K L  L I    + +   +H 
Sbjct: 336 ENHIDEKGAKYISEMSQLNALDISVNIIGNQGAKYIKEMKQLTDLLIWDNNIIEQE-EHP 394

Query: 417 KDLSSLTLLNLSQ-NCNLTDKTLELISGLTGLVSL 450
           K++  ++   L++ N  L+  +L+   GL  L+ L
Sbjct: 395 KEIKEVSTTPLAETNTKLSTPSLDNTKGLRKLIGL 429



 Score = 45.8 bits (107), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 81/177 (45%), Gaps = 35/177 (19%)

Query: 38  LGQYPGVNDKWMDVIASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNF 90
           + Q  G+N  W + + ++G   L+       +D+S +++ D+G  ++ +   L +LD + 
Sbjct: 230 MKQLTGIN-IWRNELTAEGVKFLTGLDKLTEIDISSNNIGDNGAKYISEMKQLTNLDVSD 288

Query: 91  CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
              I + G +++  +  LT L+  +NN I  +G K  + L  L +LD+            
Sbjct: 289 N-NIGEEGAKYIGNMKQLTILTLWKNN-IRGEGAKYISKLEKLTELDISE---------- 336

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
                          N I +   K +S ++ L +L IS + + + G  Y+K +++LT
Sbjct: 337 ---------------NHIDEKGAKYISEMSQLNALDISVNIIGNQGAKYIKEMKQLT 378


>gi|156406568|ref|XP_001641117.1| predicted protein [Nematostella vectensis]
 gi|156228254|gb|EDO49054.1| predicted protein [Nematostella vectensis]
          Length = 803

 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 124/423 (29%), Positives = 188/423 (44%), Gaps = 79/423 (18%)

Query: 72  SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL- 130
           +G  HL+    L  L  N C +I          +S L       + A+T + + AF    
Sbjct: 416 AGQRHLQPLVTLGVLPHNVCDKI----------ISRLVE-----DKALTPKVLHAFISCC 460

Query: 131 INLVKLDLERCTRIHGG--LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
           +  +KLD   C  +     L  L+   +L  L+IK C  ITD  ++ +  L  L +LQ+ 
Sbjct: 461 LRYIKLD---CYLLVTNDLLAELRFHRQLVHLSIKSCPIITDKALEAVVDLPALTTLQLD 517

Query: 189 CSKVTDSGIAYLKG----LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
            +K++D G+ Y  G    +Q L  L+L G  VT     SL+    L  L L   +++   
Sbjct: 518 NTKISDKGLMYFSGHANCIQTLVHLSLNGTGVTNQGTASLADWKILRILGLENTKIT--S 575

Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
            +    +  LK LN+ F  +TDECLV L    +L SLN+    + D GL +L GL  L  
Sbjct: 576 LDVIRHLQHLKTLNVAFTGVTDECLVALNSHPSLSSLNILQTSVTDRGLQHLKGL-PLSS 634

Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
           L+LSD                       +  I+D  ++ +AG++SL  L L   ++TD G
Sbjct: 635 LDLSD-----------------------YRNITDSGVQYIAGMTSLTRLLLSNTRLTDEG 671

Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA------------- 411
           +  L+ L  L  L++    +TD G+  L NF NL+ L +   G+TD              
Sbjct: 672 MVQLSGLAKLVELNVDRTVVTDKGSRVLSNFANLQILGLSSTGVTDKLLRDGVLNRCKKL 731

Query: 412 -------------GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
                        G+KH+ +L+SLTLLNL       D  L L++G   L +L +SN    
Sbjct: 732 CKLNLSRTSVTNRGIKHL-ELNSLTLLNLDWTRVTADCGL-LLTGCPALKALRMSNCTPP 789

Query: 459 SAG 461
           S G
Sbjct: 790 SPG 792



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 176/388 (45%), Gaps = 54/388 (13%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           +LP ++  +I + LV  + LT   L AF  C L+ + L  Y                 LL
Sbjct: 429 VLPHNVCDKIISRLVEDKALTPKVLHAFISCCLRYIKLDCY-----------------LL 471

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
                   VT+  L  L+    L  L    C  I+D  LE +  L  LT+L    N  I+
Sbjct: 472 --------VTNDLLAELRFHRQLVHLSIKSCPIITDKALEAVVDLPALTTLQLD-NTKIS 522

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
            +G+  F+G  N ++      T +H   ++L G              +T+     L+   
Sbjct: 523 DKGLMYFSGHANCIQ------TLVH---LSLNG------------TGVTNQGTASLADWK 561

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
            L+ L +  +K+T   +  ++ LQ L  LN+    VT  CL +L++  SL  LN+ +  +
Sbjct: 562 ILRILGLENTKIT--SLDVIRHLQHLKTLNVAFTGVTDECLVALNSHPSLSSLNILQTSV 619

Query: 241 SDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
           +D G +    +  L  L+L  +  ITD  + ++ G+T+L  L L +  + DEG+V L+GL
Sbjct: 620 TDRGLQHLKGL-PLSSLDLSDYRNITDSGVQYIAGMTSLTRLLLSNTRLTDEGMVQLSGL 678

Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK--LAGLSSLKSLNLDA 357
             L  L +  T V   G R LS   NL+ + LS TG++D  LR   L     L  LNL  
Sbjct: 679 AKLVELNVDRTVVTDKGSRVLSNFANLQILGLSSTGVTDKLLRDGVLNRCKKLCKLNLSR 738

Query: 358 RQITDTGLAALTSLTGLTHLDLFGARIT 385
             +T+ G+  L  L  LT L+L   R+T
Sbjct: 739 TSVTNRGIKHL-ELNSLTLLNLDWTRVT 765



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 84/274 (30%), Positives = 137/274 (50%), Gaps = 50/274 (18%)

Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPV-TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
           VT+  +A L+  ++L  L+++ CP+ T   L+++  L +L  L L+  ++SD G   FS 
Sbjct: 472 VTNDLLAELRFHRQLVHLSIKSCPIITDKALEAVVDLPALTTLQLDNTKISDKGLMYFSG 531

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
                               H   +  L  L+L+  G+ ++G  +L     L+ L L +T
Sbjct: 532 --------------------HANCIQTLVHLSLNGTGVTNQGTASLADWKILRILGLENT 571

Query: 311 QVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369
           ++ S   +RHL    +L+++N++FTG++D  L  L    SL SLN+    +TD GL  L 
Sbjct: 572 KITSLDVIRHLQ---HLKTLNVAFTGVTDECLVALNSHPSLSSLNILQTSVTDRGLQHLK 628

Query: 370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 429
            L  L+ LDL              +++N+          TD+GV++I  ++SLT L LS 
Sbjct: 629 GLP-LSSLDL-------------SDYRNI----------TDSGVQYIAGMTSLTRLLLS- 663

Query: 430 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
           N  LTD+ +  +SGL  LV LNV  + +T  G R
Sbjct: 664 NTRLTDEGMVQLSGLAKLVELNVDRTVVTDKGSR 697



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 110/208 (52%), Gaps = 8/208 (3%)

Query: 264 ITDECLVHLKGLTNLESLNLDSCGI-GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
           +T++ L  L+    L  L++ SC I  D+ L  +  L  L  L+L +T++   GL + SG
Sbjct: 472 VTNDLLAELRFHRQLVHLSIKSCPIITDKALEAVVDLPALTTLQLDNTKISDKGLMYFSG 531

Query: 323 LTN----LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
             N    L  ++L+ TG+++     LA    L+ L L+  +IT   L  +  L  L  L+
Sbjct: 532 HANCIQTLVHLSLNGTGVTNQGTASLADWKILRILGLENTKIT--SLDVIRHLQHLKTLN 589

Query: 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
           +    +TD     L +  +L SL I    +TD G++H+K L  L+ L+LS   N+TD  +
Sbjct: 590 VAFTGVTDECLVALNSHPSLSSLNILQTSVTDRGLQHLKGLP-LSSLDLSDYRNITDSGV 648

Query: 439 ELISGLTGLVSLNVSNSRITSAGLRHLN 466
           + I+G+T L  L +SN+R+T  G+  L+
Sbjct: 649 QYIAGMTSLTRLLLSNTRLTDEGMVQLS 676



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 108/208 (51%), Gaps = 7/208 (3%)

Query: 41  YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
           + GV D+ +  + S   SL S+++  + VTD GL HLK    L SLD +    I+D G++
Sbjct: 592 FTGVTDECLVALNSH-PSLSSLNILQTSVTDRGLQHLKGLP-LSSLDLSDYRNITDSGVQ 649

Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
           ++ G+++LT L    N  +T +GM   +GL  LV+L+++R      G   L     L+ L
Sbjct: 650 YIAGMTSLTRL-LLSNTRLTDEGMVQLSGLAKLVELNVDRTVVTDKGSRVLSNFANLQIL 708

Query: 161 NIKWCNCITDSDMKP--LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
            +     +TD  ++   L+    L  L +S + VT+ GI +L+ L  LTLLNL+   VTA
Sbjct: 709 GLS-STGVTDKLLRDGVLNRCKKLCKLNLSRTSVTNRGIKHLE-LNSLTLLNLDWTRVTA 766

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCE 246
            C   L+   +L  L ++ C     G E
Sbjct: 767 DCGLLLTGCPALKALRMSNCTPPSPGDE 794


>gi|290991306|ref|XP_002678276.1| predicted protein [Naegleria gruberi]
 gi|284091888|gb|EFC45532.1| predicted protein [Naegleria gruberi]
          Length = 445

 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 155/316 (49%), Gaps = 2/316 (0%)

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
           + +L SLNI   N I D   K +  +  L SL I  +++ D GI  +  +++LTLL++ G
Sbjct: 100 MKQLTSLNIS-NNQINDETAKSIIEMKRLTSLDIGGNQIGDEGIKLISEMKQLTLLDISG 158

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
             +    +  +S +  L  LN+   ++   G +   ++  L  L++ +NEI DE    + 
Sbjct: 159 NSIGDKGVKPISKMKQLTSLNIYNNEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSIS 218

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
            L  L SL +    IGDEG+  ++ +  L  L++S   +G  G++ +S +  L S+N+  
Sbjct: 219 ELKQLTSLTVSGNQIGDEGIKLISEMKQLTLLDISGNSIGDKGVKPISKMKQLTSLNIYN 278

Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
             I     + +  +  L SL++   +I D G  +++ +  LT L + G +I D G   + 
Sbjct: 279 NEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSISEMKQLTSLTISGNQIGDEGIKLIS 338

Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
             K L  L+I G  + D GVK I  +  LT L +  N  +     + IS +  L SL++S
Sbjct: 339 EMKQLTLLDISGKSVGDKGVKSISKMKQLTSLTIYTN-EIGVAGAKFISEMKQLTSLDIS 397

Query: 454 NSRITSAGLRHLNHAR 469
            + I   G + ++  +
Sbjct: 398 YNEIGDEGAKSISELK 413



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 162/345 (46%), Gaps = 27/345 (7%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L S+D+ G+ + D G+  + +   L  LD +    I D G++ +  +  LTSL+   NN 
Sbjct: 127 LTSLDIGGNQIGDEGIKLISEMKQLTLLDISGN-SIGDKGVKPISKMKQLTSLNI-YNNE 184

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           I   G K    +  L  LD+                           N I D   K +S 
Sbjct: 185 IGVAGSKFIIEMKQLTSLDIS-------------------------YNEIGDEGAKSISE 219

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           L  L SL +S +++ D GI  +  +++LTLL++ G  +    +  +S +  L  LN+   
Sbjct: 220 LKQLTSLTVSGNQIGDEGIKLISEMKQLTLLDISGNSIGDKGVKPISKMKQLTSLNIYNN 279

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
           ++   G +   ++  L  L++ +NEI DE    +  +  L SL +    IGDEG+  ++ 
Sbjct: 280 EIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSISEMKQLTSLTISGNQIGDEGIKLISE 339

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
           +  L  L++S   VG  G++ +S +  L S+ +    I     + ++ +  L SL++   
Sbjct: 340 MKQLTLLDISGKSVGDKGVKSISKMKQLTSLTIYTNEIGVAGAKFISEMKQLTSLDISYN 399

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           +I D G  +++ L  LT LD+ G  I D G+ ++   K L+SL+I
Sbjct: 400 EIGDEGAKSISELKQLTLLDISGNGIGDEGSKFIIGMKQLKSLDI 444



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 177/348 (50%), Gaps = 3/348 (0%)

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
           +  LTSL+   NN I  +  K+   +  L  LD+        G+  +  + +L  L+I  
Sbjct: 100 MKQLTSLNIS-NNQINDETAKSIIEMKRLTSLDIGGNQIGDEGIKLISEMKQLTLLDIS- 157

Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
            N I D  +KP+S +  L SL I  +++  +G  ++  +++LT L++    +      S+
Sbjct: 158 GNSIGDKGVKPISKMKQLTSLNIYNNEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSI 217

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
           S L  L  L ++  Q+ D+G +  S++  L +L++  N I D+ +  +  +  L SLN+ 
Sbjct: 218 SELKQLTSLTVSGNQIGDEGIKLISEMKQLTLLDISGNSIGDKGVKPISKMKQLTSLNIY 277

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
           +  IG  G   +  +  L  L++S  ++G  G + +S +  L S+ +S   I D  ++ +
Sbjct: 278 NNEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSISEMKQLTSLTISGNQIGDEGIKLI 337

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
           + +  L  L++  + + D G+ +++ +  LT L ++   I  +GA ++   K L SL+I 
Sbjct: 338 SEMKQLTLLDISGKSVGDKGVKSISKMKQLTSLTIYTNEIGVAGAKFISEMKQLTSLDIS 397

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
              + D G K I +L  LTLL++S N  + D+  + I G+  L SL++
Sbjct: 398 YNEIGDEGAKSISELKQLTLLDISGN-GIGDEGSKFIIGMKQLKSLDI 444


>gi|290996081|ref|XP_002680611.1| predicted protein [Naegleria gruberi]
 gi|284094232|gb|EFC47867.1| predicted protein [Naegleria gruberi]
          Length = 412

 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 150/294 (51%), Gaps = 7/294 (2%)

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
           + K ++ +  L SL IS +++ D G  Y+  +++LT L++    +       +S +  L 
Sbjct: 118 EAKFITEMKQLTSLDISENQIGDEGAKYISEMRQLTSLDISDIEIGDEGAKYISEMKQLT 177

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
            LN++   +SD+G +  S++  L  L++  N I DE   +++ +  L SLN+    I DE
Sbjct: 178 SLNISYNAISDEGAKFISEMKQLMSLHIYKNLIGDEGAKYIREMKQLTSLNISYNSISDE 237

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
           G   ++ +  L  L++   ++   G + +S +  L S+++S   I D  ++ L+ +  L 
Sbjct: 238 GAKFISEMKQLTSLDIVFNEISGEGAKFISEMKQLTSLDISDNEIGDEGVKYLSEMKQLT 297

Query: 352 SLNLDARQIT------DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
           SL +   +IT      + G   ++ +  LT LD+    I+D GA Y+   K L SL I  
Sbjct: 298 SLTISGNEITYCNQISEEGAKFISEMKQLTSLDISYNLISDEGAKYISEMKQLTSLNISY 357

Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
             ++  G K I ++  LT L++  N  + D+  + IS +  L SLN+S+++  S
Sbjct: 358 NSISGEGAKFISEMKQLTSLDIVSN-RIGDEGAKYISEMKQLTSLNISDNQFNS 410



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 145/283 (51%), Gaps = 7/283 (2%)

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
           + +L SL+I   N I D   K +S +  L SL IS  ++ D G  Y+  +++LT LN+  
Sbjct: 125 MKQLTSLDIS-ENQIGDEGAKYISEMRQLTSLDISDIEIGDEGAKYISEMKQLTSLNISY 183

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
             ++      +S +  L  L++ +  + D+G +   ++  L  LN+ +N I+DE    + 
Sbjct: 184 NAISDEGAKFISEMKQLMSLHIYKNLIGDEGAKYIREMKQLTSLNISYNSISDEGAKFIS 243

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
            +  L SL++    I  EG   ++ +  L  L++SD ++G  G+++LS +  L S+ +S 
Sbjct: 244 EMKQLTSLDIVFNEISGEGAKFISEMKQLTSLDISDNEIGDEGVKYLSEMKQLTSLTISG 303

Query: 334 ------TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
                   IS+   + ++ +  L SL++    I+D G   ++ +  LT L++    I+  
Sbjct: 304 NEITYCNQISEEGAKFISEMKQLTSLDISYNLISDEGAKYISEMKQLTSLNISYNSISGE 363

Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           GA ++   K L SL+I    + D G K+I ++  LT LN+S N
Sbjct: 364 GAKFISEMKQLTSLDIVSNRIGDEGAKYISEMKQLTSLNISDN 406



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 129/252 (51%), Gaps = 7/252 (2%)

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           ++ +  L  L+++  Q+ D+G +  S++  L  L++   EI DE   ++  +  L SLN+
Sbjct: 122 ITEMKQLTSLDISENQIGDEGAKYISEMRQLTSLDISDIEIGDEGAKYISEMKQLTSLNI 181

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
               I DEG   ++ +  L  L +    +G  G +++  +  L S+N+S+  ISD   + 
Sbjct: 182 SYNAISDEGAKFISEMKQLMSLHIYKNLIGDEGAKYIREMKQLTSLNISYNSISDEGAKF 241

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           ++ +  L SL++   +I+  G   ++ +  LT LD+    I D G  YL   K L SL I
Sbjct: 242 ISEMKQLTSLDIVFNEISGEGAKFISEMKQLTSLDISDNEIGDEGVKYLSEMKQLTSLTI 301

Query: 404 CGGGLT------DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
            G  +T      + G K I ++  LT L++S N  ++D+  + IS +  L SLN+S + I
Sbjct: 302 SGNEITYCNQISEEGAKFISEMKQLTSLDISYNL-ISDEGAKYISEMKQLTSLNISYNSI 360

Query: 458 TSAGLRHLNHAR 469
           +  G + ++  +
Sbjct: 361 SGEGAKFISEMK 372



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 141/286 (49%), Gaps = 33/286 (11%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L S+D+S + + D G  ++ +   L SLD +  I+I D G +++  +  LTSL+   N A
Sbjct: 128 LTSLDISENQIGDEGAKYISEMRQLTSLDIS-DIEIGDEGAKYISEMKQLTSLNISYN-A 185

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD------SD 172
           I+ +G K  + +  L+ L + +      G   ++ + +L SLNI + N I+D      S+
Sbjct: 186 ISDEGAKFISEMKQLMSLHIYKNLIGDEGAKYIREMKQLTSLNISY-NSISDEGAKFISE 244

Query: 173 MKPL------------------SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
           MK L                  S +  L SL IS +++ D G+ YL  +++LT L + G 
Sbjct: 245 MKQLTSLDIVFNEISGEGAKFISEMKQLTSLDISDNEIGDEGVKYLSEMKQLTSLTISGN 304

Query: 215 PVTAACLDS------LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
            +T     S      +S +  L  L+++   +SD+G +  S++  L  LN+ +N I+ E 
Sbjct: 305 EITYCNQISEEGAKFISEMKQLTSLDISYNLISDEGAKYISEMKQLTSLNISYNSISGEG 364

Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
              +  +  L SL++ S  IGDEG   ++ +  L  L +SD Q  S
Sbjct: 365 AKFISEMKQLTSLDIVSNRIGDEGAKYISEMKQLTSLNISDNQFNS 410



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 138/279 (49%), Gaps = 21/279 (7%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+   L S+D+S  ++ D G  ++ +   L SL+ ++   ISD G + +  +  L SL  
Sbjct: 147 SEMRQLTSLDISDIEIGDEGAKYISEMKQLTSLNISYN-AISDEGAKFISEMKQLMSLHI 205

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
            + N I  +G K    +  L  L++   +    G   +  + +L SL+I + N I+    
Sbjct: 206 YK-NLIGDEGAKYIREMKQLTSLNISYNSISDEGAKFISEMKQLTSLDIVF-NEISGEGA 263

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           K +S +  L SL IS +++ D G+ YL  +++LT L + G  +T              Y 
Sbjct: 264 KFISEMKQLTSLDISDNEIGDEGVKYLSEMKQLTSLTISGNEIT--------------YC 309

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           N    Q+S++G +  S++  L  L++ +N I+DE   ++  +  L SLN+    I  EG 
Sbjct: 310 N----QISEEGAKFISEMKQLTSLDISYNLISDEGAKYISEMKQLTSLNISYNSISGEGA 365

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
             ++ +  L  L++   ++G  G +++S +  L S+N+S
Sbjct: 366 KFISEMKQLTSLDIVSNRIGDEGAKYISEMKQLTSLNIS 404



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 113/229 (49%), Gaps = 8/229 (3%)

Query: 41  YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
           Y  ++D+    I S+   L+S+ +  + + D G  ++++   L SL+ ++   ISD G +
Sbjct: 183 YNAISDEGAKFI-SEMKQLMSLHIYKNLIGDEGAKYIREMKQLTSLNISYN-SISDEGAK 240

Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
            +  +  LTSL    N  I+ +G K  + +  L  LD+        G+  L  + +L SL
Sbjct: 241 FISEMKQLTSLDIVFN-EISGEGAKFISEMKQLTSLDISDNEIGDEGVKYLSEMKQLTSL 299

Query: 161 -----NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
                 I +CN I++   K +S +  L SL IS + ++D G  Y+  +++LT LN+    
Sbjct: 300 TISGNEITYCNQISEEGAKFISEMKQLTSLDISYNLISDEGAKYISEMKQLTSLNISYNS 359

Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
           ++      +S +  L  L++   ++ D+G +  S++  L  LN+  N+ 
Sbjct: 360 ISGEGAKFISEMKQLTSLDIVSNRIGDEGAKYISEMKQLTSLNISDNQF 408


>gi|290980799|ref|XP_002673119.1| predicted protein [Naegleria gruberi]
 gi|284086700|gb|EFC40375.1| predicted protein [Naegleria gruberi]
          Length = 426

 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 193/422 (45%), Gaps = 44/422 (10%)

Query: 74  LIHLKDCSNLQSLDFNFCIQISDGGL--EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
           L  L++ +NL+ ++       ++GG   E L  +  L  L+   N+ I   G K    L 
Sbjct: 5   LPFLENVANLRVIE-------NEGGFNCEILDSMKELKKLNIEFNSKIDPSGFKYICSLE 57

Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC--NCITDSDMKPLSGLTNLKSLQISC 189
            L  L +  C   + G    K L  L+SL       N I     K +  +  LK L I+ 
Sbjct: 58  QLTDLYMTFC---YFGFDIAKHLPSLKSLTYLLITGNYIGVEGAKYIGEMKQLKQLHIAN 114

Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVT---AACLDSLSALGSLFYLNLNRC-------- 238
           + +   G  Y+ GL++LT LN+    +T   A  +  +  L  L  +  N C        
Sbjct: 115 NNIGPEGAKYISGLEQLTFLNIRANEITMDGAKFISEMKQLTGLKIVGNNICDEGAKFIS 174

Query: 239 -------------QLSDDGCEKFSKIGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNL 283
                         + ++G +  S++ +++ L++GFN I D  +C   +K LT+L   N+
Sbjct: 175 GMKQLTNLDIASNNIGENGAKYVSEMMNIRKLDIGFNSINDGVKCFGEMKQLTDL---NV 231

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
           +SC IG +G   ++    L  L +++  +   G  H+S + NL  +++S   I D  ++ 
Sbjct: 232 NSCCIGLDGTKYISSFNQLTHLSIAENLITPYGAIHISQMKNLIKLDISDNRIRDNGVQS 291

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           ++ ++ L  LN+ +  IT  G+  +  +  LT+L +    I +  A  +   K+L  L I
Sbjct: 292 ISEMNQLTELNVSSIDITPIGIQYICKMDNLTYLIIAHNNIGEKSANQISEMKHLAQLSI 351

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
               + D G K I ++  LT L++  N  + D+ ++ +SG+  L  LN  ++ I+  G +
Sbjct: 352 YHNAVGDEGAKFISEMEQLTFLDIGYN-EIGDEGVKALSGMKQLTRLNAVDNNISDEGEK 410

Query: 464 HL 465
           ++
Sbjct: 411 YI 412



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 168/392 (42%), Gaps = 32/392 (8%)

Query: 67  SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
           S +  SG  ++     L  L   FC    D   +HL  L +LT L     N I  +G K 
Sbjct: 43  SKIDPSGFKYICSLEQLTDLYMTFCYFGFDIA-KHLPSLKSLTYL-LITGNYIGVEGAKY 100

Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
              +  L +L +        G   + GL +L  LNI+  N IT    K +S +  L  L+
Sbjct: 101 IGEMKQLKQLHIANNNIGPEGAKYISGLEQLTFLNIR-ANEITMDGAKFISEMKQLTGLK 159

Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNL-------EGCPVTAACL-------------DSLSA 226
           I  + + D G  ++ G+++LT L++        G    +  +             D +  
Sbjct: 160 IVGNNICDEGAKFISGMKQLTNLDIASNNIGENGAKYVSEMMNIRKLDIGFNSINDGVKC 219

Query: 227 LGSLFYL---NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
            G +  L   N+N C +  DG +  S    L  L++  N IT    +H+  + NL  L++
Sbjct: 220 FGEMKQLTDLNVNSCCIGLDGTKYISSFNQLTHLSIAENLITPYGAIHISQMKNLIKLDI 279

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
               I D G+ +++ +  L  L +S   +   G++++  + NL  + ++   I + S  +
Sbjct: 280 SDNRIRDNGVQSISEMNQLTELNVSSIDITPIGIQYICKMDNLTYLIIAHNNIGEKSANQ 339

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           ++ +  L  L++    + D G   ++ +  LT LD+    I D G   L   K L  L  
Sbjct: 340 ISEMKHLAQLSIYHNAVGDEGAKFISEMEQLTFLDIGYNEIGDEGVKALSGMKQLTRLNA 399

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
               ++D G K+I++      +NL+ + ++ D
Sbjct: 400 VDNNISDEGEKYIRE------MNLADHVDIYD 425



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 113/250 (45%), Gaps = 27/250 (10%)

Query: 245 CEKFSKIGSLKVLNLGFN---------------EITD----------ECLVHLKGLTNLE 279
           CE    +  LK LN+ FN               ++TD          +   HL  L +L 
Sbjct: 25  CEILDSMKELKKLNIEFNSKIDPSGFKYICSLEQLTDLYMTFCYFGFDIAKHLPSLKSLT 84

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L +    IG EG   +  +  LK L +++  +G  G +++SGL  L  +N+    I+  
Sbjct: 85  YLLITGNYIGVEGAKYIGEMKQLKQLHIANNNIGPEGAKYISGLEQLTFLNIRANEITMD 144

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
             + ++ +  L  L +    I D G   ++ +  LT+LD+    I ++GA Y+    N+R
Sbjct: 145 GAKFISEMKQLTGLKIVGNNICDEGAKFISGMKQLTNLDIASNNIGENGAKYVSEMMNIR 204

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L+I    + D GVK   ++  LT LN++  C   D T + IS    L  L+++ + IT 
Sbjct: 205 KLDIGFNSIND-GVKCFGEMKQLTDLNVNSCCIGLDGT-KYISSFNQLTHLSIAENLITP 262

Query: 460 AGLRHLNHAR 469
            G  H++  +
Sbjct: 263 YGAIHISQMK 272


>gi|207743293|ref|YP_002259685.1| type III effector gala6 protein [Ralstonia solanacearum IPO1609]
 gi|206594690|emb|CAQ61617.1| type III effector gala6 protein [Ralstonia solanacearum IPO1609]
          Length = 625

 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 136/459 (29%), Positives = 210/459 (45%), Gaps = 10/459 (2%)

Query: 11  FNELVYSRCLTEVSLEAFR--DCALQDLCLGQY--PGVNDKWMDVIASQGSSLLSVDLSG 66
           +  L   R   E++LEA +     ++ L +G+    GV++  + ++A++   L S+ L+G
Sbjct: 139 YPALKSVRFKGELTLEALKALPPGVEHLEIGRSTGSGVSNAGLALLATR--PLKSLSLNG 196

Query: 67  SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
            ++   G   L  C++L SL    C  I D     L    ++ SL    N  I   G +A
Sbjct: 197 IEIDAEGARLLATCASLTSLSLTGC-SIGDRAATALAQSRSIASLDLSVN-MIGPDGARA 254

Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
            AG   LV L+L        G + L     L+SLN    N I D+ +   +  T L  L 
Sbjct: 255 LAG-APLVSLNLHNNGIGDEGALALATSGTLKSLNAS-NNGIGDAGVLGFADNTVLTQLN 312

Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
           ++ + +  +G   L+    LT L+L    +  A    L+   SL  LN+   ++ DDG E
Sbjct: 313 LAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNVRNNEIGDDGTE 372

Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
             ++  +LK LNL +N I  +    L G T L  L+L +C I   G   L    ++  L 
Sbjct: 373 ALARNTTLKSLNLSYNRIGLQGAGALGGNTTLSELDLRACAIDPYGASALARNTSVASLH 432

Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
           L   ++G SG R ++ +  L  ++LS   I D   + LAG  SL SLNLD  +I D G A
Sbjct: 433 LGSNRIGDSGARAIATIRTLTLLDLSRNNIHDAGAQVLAGNDSLMSLNLDDNEIGDDGTA 492

Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
           AL     LT L+L   RI  +GA +L     L  L++    +   G + +   + LT LN
Sbjct: 493 ALAQHPRLTSLNLASNRIGPTGAQHLAKSATLTELDLSENRIGPEGAEALSLSTVLTTLN 552

Query: 427 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           +S N              T L SL+  N+R+  AG + L
Sbjct: 553 VSGNAIGEAGARAFAEKSTSLTSLDARNNRMGEAGAKML 591


>gi|83748568|ref|ZP_00945588.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
 gi|83724776|gb|EAP71934.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
          Length = 629

 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 136/459 (29%), Positives = 210/459 (45%), Gaps = 10/459 (2%)

Query: 11  FNELVYSRCLTEVSLEAFR--DCALQDLCLGQY--PGVNDKWMDVIASQGSSLLSVDLSG 66
           +  L   R   E++LEA +     ++ L +G+    GV++  + ++A++   L S+ L+G
Sbjct: 143 YPALKSVRFKGELTLEALKALPPGVEHLEIGRSTGSGVSNAGLALLATR--PLKSLSLNG 200

Query: 67  SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
            ++   G   L  C++L SL    C  I D     L    ++ SL    N  I   G +A
Sbjct: 201 IEIDAEGARLLATCASLTSLSLTGC-SIGDRAATALAQSRSIASLDLSVN-MIGPDGARA 258

Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
            AG   LV L+L        G + L     L+SLN    N I D+ +   +  T L  L 
Sbjct: 259 LAG-APLVSLNLHNNGIGDEGALALATSGTLKSLNAS-NNGIGDAGVLGFADNTVLTQLN 316

Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
           ++ + +  +G   L+    LT L+L    +  A    L+   SL  LN+   ++ DDG E
Sbjct: 317 LAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNVRNNEIGDDGTE 376

Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
             ++  +LK LNL +N I  +    L G T L  L+L +C I   G   L    ++  L 
Sbjct: 377 ALARNTTLKSLNLSYNRIGLQGAGALGGNTTLSELDLRACAIDPYGASALARNTSVASLH 436

Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
           L   ++G SG R ++ +  L  ++LS   I D   + LAG  SL SLNLD  +I D G A
Sbjct: 437 LGSNRIGDSGARAIATIRTLTLLDLSRNNIHDAGAQVLAGNDSLMSLNLDDNEIGDDGTA 496

Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
           AL     LT L+L   RI  +GA +L     L  L++    +   G + +   + LT LN
Sbjct: 497 ALAQHPRLTSLNLASNRIGPTGAQHLAKSATLTELDLSENRIGPEGAEALSLSTVLTTLN 556

Query: 427 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           +S N              T L SL+  N+R+  AG + L
Sbjct: 557 VSGNAIGEAGARAFAEKSTSLTSLDARNNRMGEAGAKML 595


>gi|254411467|ref|ZP_05025244.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
           PCC 7420]
 gi|196181968|gb|EDX76955.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
           PCC 7420]
          Length = 577

 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 142/397 (35%), Positives = 205/397 (51%), Gaps = 45/397 (11%)

Query: 67  SDVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
           +D+T  SGL +L + S    LD N  I ++      L GL+NLT L+   NN IT     
Sbjct: 171 TDITPLSGLTNLTELS----LDNNQIIDVT-----PLSGLANLTELNLY-NNQITE---V 217

Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
           + +GL NL +L L          VNL GL  L  L +     I   D+ PLSGLTNL  L
Sbjct: 218 SLSGLTNLTELYLSNNQITE---VNLSGLTNLRRLYLSTNQII---DISPLSGLTNLTEL 271

Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
            +  +++ D  ++ L GL  LT L+L+   +       LS L +L  L L+  Q+ D   
Sbjct: 272 DLKYNQIKD--VSPLSGLTNLTELDLKYNQIKDVS--PLSGLTNLTGLYLSSNQIKD--I 325

Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
              S + +L +L L  N+I D  +  L GL NL  L+L S  I D  +  L+GL NL  L
Sbjct: 326 SPLSGLTNLTLLYLSDNKIKD--ISPLSGLINLTGLDLGSNKIKD--ISPLSGLINLTGL 381

Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
           +LS  ++    +  LSGLTNL   +L    I++ SL   +GL++L  L L   QITD  +
Sbjct: 382 DLSSNKI--KDISPLSGLTNLTWFSLDNNQITEVSL---SGLTNLTELYLRNNQITD--V 434

Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
           ++L+ LT LT L L   +ITD   + L    NL  L +    +TD  +     L++LT+L
Sbjct: 435 SSLSELTNLTRLVLNNNQITD--VSPLSGLTNLTVLNLSNNQITDVSLSG---LTNLTVL 489

Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
           NLS N  +TD  +  +SGLT L  LN+ +++IT   +
Sbjct: 490 NLSNN-QITD--VSPLSGLTNLTGLNLISNQITDVSI 523



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 141/416 (33%), Positives = 214/416 (51%), Gaps = 43/416 (10%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+ ++L  ++L  + + D  +  L + +NL  L+  +  QI D  +  L GL NLT L  
Sbjct: 111 SELTNLTELNLYNNQIKD--VTPLSELTNLTELNL-YNNQIKD--VTPLSGLINLTRL-I 164

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
             +N IT   +   +GL NL +L L+    I   +  L GL  L  LN+ + N IT+   
Sbjct: 165 LFSNQIT--DITPLSGLTNLTELSLDNNQIID--VTPLSGLANLTELNL-YNNQITEVS- 218

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD--SLSALGSLF 231
             LSGLTNL  L +S +++T+  ++ L  L++L L        T   +D   LS L +L 
Sbjct: 219 --LSGLTNLTELYLSNNQITEVNLSGLTNLRRLYL-------STNQIIDISPLSGLTNLT 269

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
            L+L   Q+ D      S + +L  L+L +N+I D  +  L GLTNL  L L S  I D 
Sbjct: 270 ELDLKYNQIKD--VSPLSGLTNLTELDLKYNQIKD--VSPLSGLTNLTGLYLSSNQIKD- 324

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
            +  L+GL NL  L LSD ++    +  LSGL NL  ++L    I D  +  L+GL +L 
Sbjct: 325 -ISPLSGLTNLTLLYLSDNKI--KDISPLSGLINLTGLDLGSNKIKD--ISPLSGLINLT 379

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
            L+L + +I D  ++ L+ LT LT   L   +IT+     L    NL  L +    +TD 
Sbjct: 380 GLDLSSNKIKD--ISPLSGLTNLTWFSLDNNQITE---VSLSGLTNLTELYLRNNQITD- 433

Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNH 467
            V  + +L++LT L L+ N  +TD  +  +SGLT L  LN+SN++IT   L  L +
Sbjct: 434 -VSSLSELTNLTRLVLNNN-QITD--VSPLSGLTNLTVLNLSNNQITDVSLSGLTN 485



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 137/404 (33%), Positives = 207/404 (51%), Gaps = 41/404 (10%)

Query: 45  NDKWMDVIASQG-SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
           N++ +DV    G ++L  ++L  + +T+  L  L + + L  L  N   ++      +L 
Sbjct: 189 NNQIIDVTPLSGLANLTELNLYNNQITEVSLSGLTNLTELY-LSNNQITEV------NLS 241

Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
           GL+NL  L    N  I    +   +GL NL +LDL +  +I   +  L GL  L  L++K
Sbjct: 242 GLTNLRRLYLSTNQII---DISPLSGLTNLTELDL-KYNQIKD-VSPLSGLTNLTELDLK 296

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
           +       D+ PLSGLTNL  L +S +++ D  I+ L GL  LTLL L    +    +  
Sbjct: 297 YNQI---KDVSPLSGLTNLTGLYLSSNQIKD--ISPLSGLTNLTLLYLSDNKI--KDISP 349

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           LS L +L  L+L   ++ D      S + +L  L+L  N+I D  +  L GLTNL   +L
Sbjct: 350 LSGLINLTGLDLGSNKIKD--ISPLSGLINLTGLDLSSNKIKD--ISPLSGLTNLTWFSL 405

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
           D+  I +   V+L+GL NL  L L + Q+  + +  LS LTNL  + L+   I+D S   
Sbjct: 406 DNNQITE---VSLSGLTNLTELYLRNNQI--TDVSSLSELTNLTRLVLNNNQITDVS--P 458

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           L+GL++L  LNL   QITD  L+    LT LT L+L   +ITD   + L    NL  L +
Sbjct: 459 LSGLTNLTVLNLSNNQITDVSLSG---LTNLTVLNLSNNQITD--VSPLSGLTNLTGLNL 513

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
               +TD  +  +  L++LT+L LS N     K +  +SGLT L
Sbjct: 514 ISNQITDVSI--LSGLTNLTVLILSNN---QIKDVSPLSGLTNL 552



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 108/299 (36%), Positives = 149/299 (49%), Gaps = 44/299 (14%)

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           +D+ PLSGLTNL  L +  +++ D  +  L  L  LT LNL    +       LS L +L
Sbjct: 83  TDISPLSGLTNLIGLSLWGNQIKD--VTPLSELTNLTELNLYNNQIKDVT--PLSELTNL 138

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
             LNL   Q+ D      S + +L  L L  N+ITD  +  L GLTNL  L+LD+  I D
Sbjct: 139 TELNLYNNQIKD--VTPLSGLINLTRLILFSNQITD--ITPLSGLTNLTELSLDNNQIID 194

Query: 291 ----EGLVNLT---------------GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
                GL NLT               GL NL  L LS+ Q+      +LSGLTNL  + L
Sbjct: 195 VTPLSGLANLTELNLYNNQITEVSLSGLTNLTELYLSNNQITE---VNLSGLTNLRRLYL 251

Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
           S   I D  +  L+GL++L  L+L   QI D  ++ L+ LT LT LDL   +I D   + 
Sbjct: 252 STNQIID--ISPLSGLTNLTELDLKYNQIKD--VSPLSGLTNLTELDLKYNQIKD--VSP 305

Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
           L    NL  L +    + D  +  +  L++LTLL LS      D  ++ IS L+GL++L
Sbjct: 306 LSGLTNLTGLYLSSNQIKD--ISPLSGLTNLTLLYLS------DNKIKDISPLSGLINL 356



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 82/236 (34%), Positives = 116/236 (49%), Gaps = 30/236 (12%)

Query: 62  VDLSGSDVTDSGLIHLKDCS------NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
           ++L+G D+   G   +KD S      NL  LD +   +I D  +  L GL+NLT  S   
Sbjct: 354 INLTGLDL---GSNKIKDISPLSGLINLTGLDLSSN-KIKD--ISPLSGLTNLTWFSLD- 406

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
           NN IT     + +GL NL +L L      +  + ++  L +L +L     N    +D+ P
Sbjct: 407 NNQITE---VSLSGLTNLTELYLR-----NNQITDVSSLSELTNLTRLVLNNNQITDVSP 458

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           LSGLTNL  L +S +++TD     L GL  LT+LNL    +T      LS L +L  LNL
Sbjct: 459 LSGLTNLTVLNLSNNQITD---VSLSGLTNLTVLNLSNNQITDVS--PLSGLTNLTGLNL 513

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
              Q++D      S + +L VL L  N+I D  +  L GLTNL  L L    I  +
Sbjct: 514 ISNQITD--VSILSGLTNLTVLILSNNQIKD--VSPLSGLTNLRRLYLGDNPIPQQ 565



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/174 (37%), Positives = 88/174 (50%), Gaps = 14/174 (8%)

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           L+GL NL  L L   Q+    +  LS LTNL  +NL    I D  +  L+ L++L  LNL
Sbjct: 88  LSGLTNLIGLSLWGNQI--KDVTPLSELTNLTELNLYNNQIKD--VTPLSELTNLTELNL 143

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
              QI D  +  L+ L  LT L LF  +ITD     L    NL  L +    + D  V  
Sbjct: 144 YNNQIKD--VTPLSGLINLTRLILFSNQITD--ITPLSGLTNLTELSLDNNQIID--VTP 197

Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           +  L++LT LNL  N  +T+ +L   SGLT L  L +SN++IT   L  L + R
Sbjct: 198 LSGLANLTELNLYNN-QITEVSL---SGLTNLTELYLSNNQITEVNLSGLTNLR 247


>gi|290972120|ref|XP_002668808.1| predicted protein [Naegleria gruberi]
 gi|284082332|gb|EFC36064.1| predicted protein [Naegleria gruberi]
          Length = 329

 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 158/326 (48%), Gaps = 2/326 (0%)

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
           ++ LTSL    +N I  +G K  + +  L  LD+        G   +  +  L SL+I  
Sbjct: 1   MNQLTSLDMH-SNEIGVEGSKYISEMKQLTSLDIYSNEIGVEGAKYISEMKSLTSLDI-H 58

Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
            N I     K +S +  L SL I  +++   G  Y+  + +LT L++    +       +
Sbjct: 59  SNEIGVEGSKYISEMKQLTSLNIGYNQIGVEGSKYISEMNQLTSLDIHSNEIGVEGSKYI 118

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
           S +  L  LN+   Q+S +G +  S + SL  L +G+N+I  E   ++  +  L SLN+ 
Sbjct: 119 SEMKQLTSLNIGYNQISVEGAKYISGMKSLTSLYIGYNQIGVEGSKYISEMKQLTSLNIG 178

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
              IG+EG   ++G+ +L  L +   Q+G  G +++S +  L S+N+    IS    + +
Sbjct: 179 HNEIGEEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHNEISVEGSKYI 238

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
           +G+ SL SLN+   QI   G   ++ +  LT L++    I   GA Y+   K+L SL I 
Sbjct: 239 SGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGYNEIGVEGAKYISGMKSLTSLNIG 298

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQN 430
              +   G K+I ++  LT LN+  N
Sbjct: 299 YNQIGVEGSKYISEMKQLTSLNIGHN 324



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 150/305 (49%), Gaps = 1/305 (0%)

Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
            N I     K +S +  L SL I  +++   G  Y+  ++ LT L++    +       +
Sbjct: 11  SNEIGVEGSKYISEMKQLTSLDIYSNEIGVEGAKYISEMKSLTSLDIHSNEIGVEGSKYI 70

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
           S +  L  LN+   Q+  +G +  S++  L  L++  NEI  E   ++  +  L SLN+ 
Sbjct: 71  SEMKQLTSLNIGYNQIGVEGSKYISEMNQLTSLDIHSNEIGVEGSKYISEMKQLTSLNIG 130

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
              I  EG   ++G+ +L  L +   Q+G  G +++S +  L S+N+    I +   + +
Sbjct: 131 YNQISVEGAKYISGMKSLTSLYIGYNQIGVEGSKYISEMKQLTSLNIGHNEIGEEGAKYI 190

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
           +G+ SL SLN+   QI   G   ++ +  LT L++    I+  G+ Y+   K+L SL I 
Sbjct: 191 SGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHNEISVEGSKYISGMKSLTSLNIG 250

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
              +   G K+I ++  LT LN+  N  +  +  + ISG+  L SLN+  ++I   G ++
Sbjct: 251 YNQIGVEGSKYISEMKQLTSLNIGYN-EIGVEGAKYISGMKSLTSLNIGYNQIGVEGSKY 309

Query: 465 LNHAR 469
           ++  +
Sbjct: 310 ISEMK 314



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 160/315 (50%), Gaps = 15/315 (4%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+   L S+D+  +++   G  ++ +  +L SLD +   +I   G +++  +  LTSL+ 
Sbjct: 23  SEMKQLTSLDIYSNEIGVEGAKYISEMKSLTSLDIH-SNEIGVEGSKYISEMKQLTSLNI 81

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG------LMKLESLNIKWCNC 167
             N  I  +G K  + +  L  LD      IH   + ++G      + +L SLNI + N 
Sbjct: 82  GYN-QIGVEGSKYISEMNQLTSLD------IHSNEIGVEGSKYISEMKQLTSLNIGY-NQ 133

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           I+    K +SG+ +L SL I  +++   G  Y+  +++LT LN+    +       +S +
Sbjct: 134 ISVEGAKYISGMKSLTSLYIGYNQIGVEGSKYISEMKQLTSLNIGHNEIGEEGAKYISGM 193

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
            SL  LN+   Q+  +G +  S++  L  LN+G NEI+ E   ++ G+ +L SLN+    
Sbjct: 194 KSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHNEISVEGSKYISGMKSLTSLNIGYNQ 253

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           IG EG   ++ +  L  L +   ++G  G +++SG+ +L S+N+ +  I     + ++ +
Sbjct: 254 IGVEGSKYISEMKQLTSLNIGYNEIGVEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEM 313

Query: 348 SSLKSLNLDARQITD 362
             L SLN+   +I +
Sbjct: 314 KQLTSLNIGHNEIGE 328



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 136/267 (50%), Gaps = 1/267 (0%)

Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
           + +LT L++    +       +S +  L  L++   ++  +G +  S++ SL  L++  N
Sbjct: 1   MNQLTSLDMHSNEIGVEGSKYISEMKQLTSLDIYSNEIGVEGAKYISEMKSLTSLDIHSN 60

Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
           EI  E   ++  +  L SLN+    IG EG   ++ +  L  L++   ++G  G +++S 
Sbjct: 61  EIGVEGSKYISEMKQLTSLNIGYNQIGVEGSKYISEMNQLTSLDIHSNEIGVEGSKYISE 120

Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
           +  L S+N+ +  IS    + ++G+ SL SL +   QI   G   ++ +  LT L++   
Sbjct: 121 MKQLTSLNIGYNQISVEGAKYISGMKSLTSLYIGYNQIGVEGSKYISEMKQLTSLNIGHN 180

Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
            I + GA Y+   K+L SL I    +   G K+I ++  LT LN+  N  ++ +  + IS
Sbjct: 181 EIGEEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHN-EISVEGSKYIS 239

Query: 443 GLTGLVSLNVSNSRITSAGLRHLNHAR 469
           G+  L SLN+  ++I   G ++++  +
Sbjct: 240 GMKSLTSLNIGYNQIGVEGSKYISEMK 266



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 119/238 (50%), Gaps = 3/238 (1%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+ + L S+D+  +++   G  ++ +   L SL+  +  QIS  G +++ G+ +LTSL +
Sbjct: 95  SEMNQLTSLDIHSNEIGVEGSKYISEMKQLTSLNIGYN-QISVEGAKYISGMKSLTSL-Y 152

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
              N I  +G K  + +  L  L++        G   + G+  L SLNI + N I     
Sbjct: 153 IGYNQIGVEGSKYISEMKQLTSLNIGHNEIGEEGAKYISGMKSLTSLNIGY-NQIGVEGS 211

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           K +S +  L SL I  ++++  G  Y+ G++ LT LN+    +       +S +  L  L
Sbjct: 212 KYISEMKQLTSLNIGHNEISVEGSKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSL 271

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
           N+   ++  +G +  S + SL  LN+G+N+I  E   ++  +  L SLN+    IG+E
Sbjct: 272 NIGYNEIGVEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHNEIGEE 329


>gi|290979162|ref|XP_002672303.1| predicted protein [Naegleria gruberi]
 gi|284085879|gb|EFC39559.1| predicted protein [Naegleria gruberi]
          Length = 371

 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 175/368 (47%), Gaps = 28/368 (7%)

Query: 98  GLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
           G+E  + +S L  L+  +  +N I  +G K  + L  L  LD+        G+ ++  L 
Sbjct: 15  GVEEAKYISELKQLTHLYISSNKIGVEGAKYISELKQLTNLDISYNNIGAEGVEHIGNLK 74

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
           +L  L I + N I D   K LS L  L  L  + + +   G+ Y+  L++L+        
Sbjct: 75  QLTFLCI-YHNNIGDEGAKHLSALKQLTYLYTAFNNIGVEGVKYIIKLKQLS-------- 125

Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
                           YLN+   ++ D+G +  S++  L  LN+  + I  + + H+  +
Sbjct: 126 ----------------YLNICSNKVGDEGAKYLSELKQLTNLNISNSNICAKGVEHITEM 169

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
             L  LN+ +  IG EG   +  L  L CL +  + +   G +++S +  L  +N+S+  
Sbjct: 170 NQLTILNISTNNIGIEGAKYIGKLKQLTCLNIYYSNIDIEGAKYISEMKQLTDLNISYNN 229

Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
           I     + +  L  L  L +    I D G   ++ L  LT+L+++   I D GA Y+   
Sbjct: 230 IGIEGAKYIGKLKQLTCLTIYNNYICDEGAKYISELNQLTNLNIYSNNIGDEGAKYISEL 289

Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
           K L +L+I    +   GVK+I +L+ LT+L+ S N N+ D+  + IS L  L +L++S++
Sbjct: 290 KQLTNLDISVNQIGAKGVKYIAELNQLTILSASLN-NIRDEGAKYISELKQLTNLDISSN 348

Query: 456 RITSAGLR 463
            I+  G++
Sbjct: 349 NISIEGVK 356



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 156/315 (49%), Gaps = 5/315 (1%)

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
           +K L KL S N    N I   + K +S L  L  L IS +K+   G  Y+  L++LT L+
Sbjct: 1   MKSLTKLISCN----NNIGVEEAKYISELKQLTHLYISSNKIGVEGAKYISELKQLTNLD 56

Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
           +    + A  ++ +  L  L +L +    + D+G +  S +  L  L   FN I  E + 
Sbjct: 57  ISYNNIGAEGVEHIGNLKQLTFLCIYHNNIGDEGAKHLSALKQLTYLYTAFNNIGVEGVK 116

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
           ++  L  L  LN+ S  +GDEG   L+ L  L  L +S++ + + G+ H++ +  L  +N
Sbjct: 117 YIIKLKQLSYLNICSNKVGDEGAKYLSELKQLTNLNISNSNICAKGVEHITEMNQLTILN 176

Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
           +S   I     + +  L  L  LN+    I   G   ++ +  LT L++    I   GA 
Sbjct: 177 ISTNNIGIEGAKYIGKLKQLTCLNIYYSNIDIEGAKYISEMKQLTDLNISYNNIGIEGAK 236

Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
           Y+   K L  L I    + D G K+I +L+ LT LN+  N N+ D+  + IS L  L +L
Sbjct: 237 YIGKLKQLTCLTIYNNYICDEGAKYISELNQLTNLNIYSN-NIGDEGAKYISELKQLTNL 295

Query: 451 NVSNSRITSAGLRHL 465
           ++S ++I + G++++
Sbjct: 296 DISVNQIGAKGVKYI 310



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 155/332 (46%), Gaps = 2/332 (0%)

Query: 98  GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
           G +++  L  LT+L    NN I A+G++    L  L  L +        G  +L  L +L
Sbjct: 42  GAKYISELKQLTNLDISYNN-IGAEGVEHIGNLKQLTFLCIYHNNIGDEGAKHLSALKQL 100

Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
             L   + N I    +K +  L  L  L I  +KV D G  YL  L++LT LN+    + 
Sbjct: 101 TYLYTAFNN-IGVEGVKYIIKLKQLSYLNICSNKVGDEGAKYLSELKQLTNLNISNSNIC 159

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
           A  ++ ++ +  L  LN++   +  +G +   K+  L  LN+ ++ I  E   ++  +  
Sbjct: 160 AKGVEHITEMNQLTILNISTNNIGIEGAKYIGKLKQLTCLNIYYSNIDIEGAKYISEMKQ 219

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           L  LN+    IG EG   +  L  L CL + +  +   G +++S L  L ++N+    I 
Sbjct: 220 LTDLNISYNNIGIEGAKYIGKLKQLTCLTIYNNYICDEGAKYISELNQLTNLNIYSNNIG 279

Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
           D   + ++ L  L +L++   QI   G+  +  L  LT L      I D GA Y+   K 
Sbjct: 280 DEGAKYISELKQLTNLDISVNQIGAKGVKYIAELNQLTILSASLNNIRDEGAKYISELKQ 339

Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 429
           L +L+I    ++  GVK  +++  LT+L + Q
Sbjct: 340 LTNLDISSNNISIEGVKCFEEMKHLTVLEIYQ 371


>gi|46445969|ref|YP_007334.1| hypothetical protein pc0335 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399610|emb|CAF23059.1| hypothetical protein pc0335 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 642

 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 114/324 (35%), Positives = 168/324 (51%), Gaps = 11/324 (3%)

Query: 66  GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
            + +TD+ L+ LK+C NL+ L    C   +D GL HL  L  L  L+      +T  G+ 
Sbjct: 314 NAHLTDAQLLTLKNCKNLKVLQLQACHNFTDAGLAHLTPLMALQHLNLSYCKNLTDAGLA 373

Query: 126 AFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
             A L+ L  L+L  C  +   GL +L  L+ L  LN+ WCN +TD+ +  L+ L  L  
Sbjct: 374 HLAPLVVLQHLNLSSCHNLTDAGLAHLTPLVALTHLNLSWCNKLTDAGLAHLTPLVALTH 433

Query: 185 LQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLS 241
           L +  C K+T+ G+A+L  L  L  L+L  C  +T A L  LS+L +L +L L  C  L+
Sbjct: 434 LDLRECDKLTNRGLAHLALLLTLQYLDLNYCRNLTDAGLAHLSSLVALQHLKLCCCVSLT 493

Query: 242 DDGCEKFSKIGSLKVLNLG--FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
           D G    + + +L  L+L   FN ITD  L HL  L  L+ L L  C  + D GL +LT 
Sbjct: 494 DAGLAHLAPLVALTHLDLSWCFN-ITDAGLAHLTPLVTLQHLGLSGCRRLTDVGLAHLTR 552

Query: 299 LCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD 356
           L  L+ L L+    +  +GL HL+ L NL+ ++LS    +++  L  L  L +L+ L+L 
Sbjct: 553 LVALQHLGLNRCDNLTDAGLAHLTPLINLQHLDLSECRKLTNAGLAHLTPLVALQRLDLR 612

Query: 357 -ARQITDTGLAALTSLTGLTHLDL 379
              ++T   LA    L    HLDL
Sbjct: 613 CCNKLTGARLAHFKFLVAKPHLDL 636



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 119/327 (36%), Positives = 171/327 (52%), Gaps = 23/327 (7%)

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
           ++E+LN      +TD+ +  L    NLK LQ+ +C   TD+G+A+L  L  L  LNL  C
Sbjct: 305 EIEALNFSKNAHLTDAQLLTLKNCKNLKVLQLQACHNFTDAGLAHLTPLMALQHLNLSYC 364

Query: 215 P-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVH 271
             +T A L  L+ L  L +LNL+ C  L+D G    + + +L  LNL + N++TD  L H
Sbjct: 365 KNLTDAGLAHLAPLVVLQHLNLSSCHNLTDAGLAHLTPLVALTHLNLSWCNKLTDAGLAH 424

Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK------CLELSDTQVGSSGLRHLSGLT 324
           L  L  L  L+L  C  + + GL +L  L  L+      C  L+D     +GL HLS L 
Sbjct: 425 LTPLVALTHLDLRECDKLTNRGLAHLALLLTLQYLDLNYCRNLTD-----AGLAHLSSLV 479

Query: 325 NLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA 382
            L+ + L     ++D  L  LA L +L  L+L     ITD GLA LT L  L HL L G 
Sbjct: 480 ALQHLKLCCCVSLTDAGLAHLAPLVALTHLDLSWCFNITDAGLAHLTPLVTLQHLGLSGC 539

Query: 383 R-ITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
           R +TD G A+L     L+ L +  C   LTDAG+ H+  L +L  L+LS+   LT+  L 
Sbjct: 540 RRLTDVGLAHLTRLVALQHLGLNRCDN-LTDAGLAHLTPLINLQHLDLSECRKLTNAGLA 598

Query: 440 LISGLTGLVSLNVS-NSRITSAGLRHL 465
            ++ L  L  L++   +++T A L H 
Sbjct: 599 HLTPLVALQRLDLRCCNKLTGARLAHF 625



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 2/136 (1%)

Query: 58  SLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           +L  +DLS   ++TD+GL HL     LQ L  + C +++D GL HL  L  L  L   R 
Sbjct: 505 ALTHLDLSWCFNITDAGLAHLTPLVTLQHLGLSGCRRLTDVGLAHLTRLVALQHLGLNRC 564

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
           + +T  G+     LINL  LDL  C ++ + GL +L  L+ L+ L+++ CN +T + +  
Sbjct: 565 DNLTDAGLAHLTPLINLQHLDLSECRKLTNAGLAHLTPLVALQRLDLRCCNKLTGARLAH 624

Query: 176 LSGLTNLKSLQISCSK 191
              L     L +   K
Sbjct: 625 FKFLVAKPHLDLRWYK 640



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 73/152 (48%), Gaps = 28/152 (18%)

Query: 317 LRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGL 374
           L H S    +E++N S    ++D  L  L    +LK L L A    TD GLA LT L  L
Sbjct: 299 LNHFSN--EIEALNFSKNAHLTDAQLLTLKNCKNLKVLQLQACHNFTDAGLAHLTPLMAL 356

Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
            HL+L          +Y +N             LTDAG+ H+  L  L  LNLS   NLT
Sbjct: 357 QHLNL----------SYCKN-------------LTDAGLAHLAPLVVLQHLNLSSCHNLT 393

Query: 435 DKTLELISGLTGLVSLNVSN-SRITSAGLRHL 465
           D  L  ++ L  L  LN+S  +++T AGL HL
Sbjct: 394 DAGLAHLTPLVALTHLNLSWCNKLTDAGLAHL 425


>gi|54294508|ref|YP_126923.1| hypothetical protein lpl1579 [Legionella pneumophila str. Lens]
 gi|53754340|emb|CAH15819.1| hypothetical protein lpl1579 [Legionella pneumophila str. Lens]
          Length = 464

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 113/377 (29%), Positives = 173/377 (45%), Gaps = 4/377 (1%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
           + D+    +A+   SL +++L  +++ D G   L    +L +L+ ++   I   G + L 
Sbjct: 56  IGDEGAKALAAN-QSLSTLNLRANNIGDEGAKALAANQSLSTLNLSYN-NIGAEGAKALA 113

Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
              +L++L+ R NN I  +G KA A   +L  L+L        G   L     L +LN++
Sbjct: 114 ANQSLSTLNLRANN-IGDEGAKALAANQSLSTLNLRYNNIGDEGAKALAANQSLSTLNLR 172

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
             N I D   K L+   +L +L +S + +   G   L   Q L+ LNL    + A    +
Sbjct: 173 -NNNIGDEGAKALAANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNLRYNNIRAEGAKA 231

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           L+A  SL  LNL+   + D+G +  +   SL  LNL +N I DE    L    +L +LNL
Sbjct: 232 LAANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNL 291

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
               IGDEG   L    +L  L LS   + + G + L+   +L ++NLS+  I D   + 
Sbjct: 292 SYNNIGDEGAKALAANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNLSYNNIGDEGAKA 351

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           LA   SL +LNL    I   G  AL +   L+ L+L    I D GA  L     L+    
Sbjct: 352 LAANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNLSYNNIGDEGAKALNETDPLKRANY 411

Query: 404 CGGGLTDAGVKHIKDLS 420
                 D GV  +  LS
Sbjct: 412 GREAGMDTGVPSLARLS 428



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 107/337 (31%), Positives = 156/337 (46%), Gaps = 2/337 (0%)

Query: 94  ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
           I D G + L    +L++L+ R NN I  +G KA A   +L  L+L        G   L  
Sbjct: 56  IGDEGAKALAANQSLSTLNLRANN-IGDEGAKALAANQSLSTLNLSYNNIGAEGAKALAA 114

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
              L +LN++  N I D   K L+   +L +L +  + + D G   L   Q L+ LNL  
Sbjct: 115 NQSLSTLNLR-ANNIGDEGAKALAANQSLSTLNLRYNNIGDEGAKALAANQSLSTLNLRN 173

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
             +      +L+A  SL  LNL+   +  +G +  +   SL  LNL +N I  E    L 
Sbjct: 174 NNIGDEGAKALAANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNLRYNNIRAEGAKALA 233

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
              +L +LNL    IGDEG   L    +L  L LS   +G  G + L+   +L ++NLS+
Sbjct: 234 ANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSY 293

Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
             I D   + LA   SL +LNL    I   G  AL +   L+ L+L    I D GA  L 
Sbjct: 294 NNIGDEGAKALAANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNLSYNNIGDEGAKALA 353

Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
             ++L +L +    +   G K +    SL+ LNLS N
Sbjct: 354 ANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNLSYN 390



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 151/310 (48%), Gaps = 2/310 (0%)

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
           +++SLN++  N I D   K L+   +L +L +  + + D G   L   Q L+ LNL    
Sbjct: 45  EIKSLNLR-NNNIGDEGAKALAANQSLSTLNLRANNIGDEGAKALAANQSLSTLNLSYNN 103

Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
           + A    +L+A  SL  LNL    + D+G +  +   SL  LNL +N I DE    L   
Sbjct: 104 IGAEGAKALAANQSLSTLNLRANNIGDEGAKALAANQSLSTLNLRYNNIGDEGAKALAAN 163

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
            +L +LNL +  IGDEG   L    +L  L LS   + + G + L+   +L ++NL +  
Sbjct: 164 QSLSTLNLRNNNIGDEGAKALAANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNLRYNN 223

Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
           I     + LA   SL +LNL    I D G  AL +   L+ L+L    I D GA  L   
Sbjct: 224 IRAEGAKALAANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSYNNIGDEGAKALAAN 283

Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
           ++L +L +    + D G K +    SL+ LNLS N N+  +  + ++    L +LN+S +
Sbjct: 284 QSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSYN-NIRAEGAKALAANQSLSTLNLSYN 342

Query: 456 RITSAGLRHL 465
            I   G + L
Sbjct: 343 NIGDEGAKAL 352



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 133/285 (46%), Gaps = 1/285 (0%)

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NL + +++   + +  + +L    ++  LNL    +      +L+A  SL  LNL    +
Sbjct: 21  NLSNQKLNAQDIKELIVPFLNTNPEIKSLNLRNNNIGDEGAKALAANQSLSTLNLRANNI 80

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
            D+G +  +   SL  LNL +N I  E    L    +L +LNL +  IGDEG   L    
Sbjct: 81  GDEGAKALAANQSLSTLNLSYNNIGAEGAKALAANQSLSTLNLRANNIGDEGAKALAANQ 140

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
           +L  L L    +G  G + L+   +L ++NL    I D   + LA   SL +LNL    I
Sbjct: 141 SLSTLNLRYNNIGDEGAKALAANQSLSTLNLRNNNIGDEGAKALAANQSLSTLNLSYNNI 200

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
              G  AL +   L+ L+L    I   GA  L   ++L +L +    + D G K +    
Sbjct: 201 RAEGAKALAANQSLSTLNLRYNNIRAEGAKALAANQSLSTLNLSYNNIGDEGAKALAANQ 260

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           SL+ LNLS N N+ D+  + ++    L +LN+S + I   G + L
Sbjct: 261 SLSTLNLSYN-NIGDEGAKALAANQSLSTLNLSYNNIGDEGAKAL 304


>gi|290979019|ref|XP_002672232.1| predicted protein [Naegleria gruberi]
 gi|284085807|gb|EFC39488.1| predicted protein [Naegleria gruberi]
          Length = 426

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 101/396 (25%), Positives = 185/396 (46%), Gaps = 34/396 (8%)

Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR---------------- 143
           E L  +  L  L+   N+ I   G K    L  L  L +  C                  
Sbjct: 26  EILDSMKELKKLNLENNSNIHPSGFKYICSLEQLTDLYMTFCYFRLPIAKHLPSLKSLTY 85

Query: 144 --IHGGLVNLKG------LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
             I G  + ++G      + +L+ L+I   N I     K +SGL  L  L I  +++T  
Sbjct: 86  LLITGNYIGVEGAKYIGEMKQLKQLHIANNN-IGPEGAKHISGLEQLTILNIRANEITVD 144

Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
           G  ++  +++LT+LN+ G  +       +S +  L  L+++   + ++G +  S++ ++ 
Sbjct: 145 GAKFISEMKQLTVLNIIGNDICDEGAKFISGMKQLTNLDISVNNIGENGAKYVSEMLNIT 204

Query: 256 VLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
            LN+GFN I D  EC   +K LT+L   N++S  IG  G+V ++    L  L ++   + 
Sbjct: 205 KLNIGFNSINDCVECFGKMKQLTDL---NVNSSCIGLCGIVFISSFNQLTHLSIASNSIS 261

Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
           +    H+S + N+  +++S   I D  ++ ++ ++ L  LN+ +  IT  G+  +  +  
Sbjct: 262 NYEASHISQMKNVIKLDISDNRIGDNGVQSISEMNQLTELNVSSIDITPIGIQYICKMDN 321

Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
           LT+L +    I   GA  +   K+L  L I    + D G K I ++  LT LN+  N  +
Sbjct: 322 LTYLIIAHNNIGVKGANQISEMKHLAQLSIYNNAVGDEGAKFISEMEQLTFLNIGSN-EI 380

Query: 434 TDKTLELISGLTGLVSLNVSNSRITSAG---LRHLN 466
            D+ ++ +SG+  L  LN  ++ I+  G   +R +N
Sbjct: 381 GDEGVKALSGMKQLTELNTVDNNISEEGENYIREMN 416



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 149/340 (43%), Gaps = 15/340 (4%)

Query: 98  GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
           G +++  +  L  L    NN I  +G K  +GL  L  L++        G   +  + +L
Sbjct: 97  GAKYIGEMKQLKQLHIANNN-IGPEGAKHISGLEQLTILNIRANEITVDGAKFISEMKQL 155

Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
             LNI   N I D   K +SG+  L +L IS + + ++G  Y+  +  +T LN+ G    
Sbjct: 156 TVLNI-IGNDICDEGAKFISGMKQLTNLDISVNNIGENGAKYVSEMLNITKLNI-GFNSI 213

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
             C++    +  L  LN+N   +   G    S    L  L++  N I++    H+  + N
Sbjct: 214 NDCVECFGKMKQLTDLNVNSSCIGLCGIVFISSFNQLTHLSIASNSISNYEASHISQMKN 273

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           +  L++    IGD G+ +++ +  L  L +S   +   G++++  + NL  + ++   I 
Sbjct: 274 VIKLDISDNRIGDNGVQSISEMNQLTELNVSSIDITPIGIQYICKMDNLTYLIIAHNNIG 333

Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
                +++ +  L  L++    + D G   ++ +  LT L++    I D G   L   K 
Sbjct: 334 VKGANQISEMKHLAQLSIYNNAVGDEGAKFISEMEQLTFLNIGSNEIGDEGVKALSGMKQ 393

Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
           L  L      +++ G  +I+++            NLTD T
Sbjct: 394 LTELNTVDNNISEEGENYIREM------------NLTDHT 421



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 142/300 (47%), Gaps = 3/300 (1%)

Query: 94  ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
           I   G +H+ GL  LT L+ R N  IT  G K  + +  L  L++        G   + G
Sbjct: 117 IGPEGAKHISGLEQLTILNIRAN-EITVDGAKFISEMKQLTVLNIIGNDICDEGAKFISG 175

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
           + +L +L+I   N I ++  K +S + N+  L I  + + D    + K +++LT LN+  
Sbjct: 176 MKQLTNLDIS-VNNIGENGAKYVSEMLNITKLNIGFNSINDCVECFGK-MKQLTDLNVNS 233

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
             +    +  +S+   L +L++    +S+      S++ ++  L++  N I D  +  + 
Sbjct: 234 SCIGLCGIVFISSFNQLTHLSIASNSISNYEASHISQMKNVIKLDISDNRIGDNGVQSIS 293

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
            +  L  LN+ S  I   G+  +  + NL  L ++   +G  G   +S + +L  +++  
Sbjct: 294 EMNQLTELNVSSIDITPIGIQYICKMDNLTYLIIAHNNIGVKGANQISEMKHLAQLSIYN 353

Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
             + D   + ++ +  L  LN+ + +I D G+ AL+ +  LT L+     I++ G  Y+R
Sbjct: 354 NAVGDEGAKFISEMEQLTFLNIGSNEIGDEGVKALSGMKQLTELNTVDNNISEEGENYIR 413



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 133/286 (46%), Gaps = 11/286 (3%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+   L  +++ G+D+ D G   +     L +LD +    I + G +++  + N+T L+ 
Sbjct: 150 SEMKQLTVLNIIGNDICDEGAKFISGMKQLTNLDISVN-NIGENGAKYVSEMLNITKLNI 208

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
             N+      ++ F  +  L  L++        G+V +    +L  L+I   N I++ + 
Sbjct: 209 GFNS--INDCVECFGKMKQLTDLNVNSSCIGLCGIVFISSFNQLTHLSI-ASNSISNYEA 265

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
             +S + N+  L IS +++ D+G+  +  + +LT LN+    +T   +  +  + +L YL
Sbjct: 266 SHISQMKNVIKLDISDNRIGDNGVQSISEMNQLTELNVSSIDITPIGIQYICKMDNLTYL 325

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
            +    +   G  + S++  L  L++  N + DE    +  +  L  LN+ S  IGDEG+
Sbjct: 326 IIAHNNIGVKGANQISEMKHLAQLSIYNNAVGDEGAKFISEMEQLTFLNIGSNEIGDEGV 385

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISD 338
             L+G+  L  L   D  +   G  +      +  +NL+  TGI D
Sbjct: 386 KALSGMKQLTELNTVDNNISEEGENY------IREMNLTDHTGIYD 425



 Score = 42.7 bits (99), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 344 LAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
           L  +  LK LNL+    I  +G   + SL  LT L +         A +L + K+L  L 
Sbjct: 28  LDSMKELKKLNLENNSNIHPSGFKYICSLEQLTDLYMTFCYFRLPIAKHLPSLKSLTYLL 87

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
           I G  +   G K+I ++  L  L+++ N N+  +  + ISGL  L  LN+  + IT  G 
Sbjct: 88  ITGNYIGVEGAKYIGEMKQLKQLHIANN-NIGPEGAKHISGLEQLTILNIRANEITVDGA 146

Query: 463 RHLNHAR 469
           + ++  +
Sbjct: 147 KFISEMK 153


>gi|434405931|ref|YP_007148816.1| Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum
           stagnale PCC 7417]
 gi|428260186|gb|AFZ26136.1| Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum
           stagnale PCC 7417]
          Length = 451

 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 128/396 (32%), Positives = 215/396 (54%), Gaps = 36/396 (9%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           ++L  S+++D  +  L + +NL +LD      +S+  +  ++ LSNLT+L+    ++   
Sbjct: 76  LNLESSEISD--IKPLSNLTNLTTLD------LSENQISDIKPLSNLTNLTDIDLSSNQI 127

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
             +K  + L NL  +DL +       + ++K L  L +L +   +    SD+K LS LTN
Sbjct: 128 SDIKVLSNLTNLTDIDLSK-----NQISDIKVLSNLTNLTVLDLSDNQISDIKVLSNLTN 182

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
           L S+++S ++++D  I  L  L  LT+L+L    ++   +  LS L +L YL+L   Q+ 
Sbjct: 183 LTSVKLSENQISD--IEVLSNLTNLTVLDLGYNQISDIKV--LSNLTNLTYLSLWNNQIG 238

Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
           D   +  S + +L  L+L  N+I+D  +  L  LTNL SL L    I D  +  L+ L N
Sbjct: 239 D--IKVLSNLTNLTSLSLWDNQISD--IKPLSNLTNLTSLYLWDNQISD--IKPLSNLTN 292

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
           L  L L D Q+    ++ LS LTNL  ++LS   I  G ++ L+ L+SL SL+L   QI 
Sbjct: 293 LTYLYLWDNQIA--DIKPLSNLTNLTDLDLSKNQI--GDIKPLSNLTSLTSLDLSKNQIA 348

Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
           D  +  L++LT LT L L+  +  D     L N  NL SL++    ++D  +K + +L++
Sbjct: 349 D--IKPLSNLTNLTSLSLWRNQSID--IELLSNLTNLTSLDLSENQISD--IKPLSNLTN 402

Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
           LT ++LS+N  ++D  ++ +S LT L  L + N+ I
Sbjct: 403 LTDIDLSEN-QISD--IKPLSNLTKLEDLQIQNNPI 435



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 114/327 (34%), Positives = 175/327 (53%), Gaps = 57/327 (17%)

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           SD+KPLS LTNL +L +S ++++D  I  L  L  LT ++L    ++   +  LS L +L
Sbjct: 84  SDIKPLSNLTNLTTLDLSENQISD--IKPLSNLTNLTDIDLSSNQISDIKV--LSNLTNL 139

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
             ++L++ Q+SD   +  S + +L VL+L  N+I+D  +  L  LTNL S+ L    I D
Sbjct: 140 TDIDLSKNQISD--IKVLSNLTNLTVLDLSDNQISD--IKVLSNLTNLTSVKLSENQISD 195

Query: 291 -EGLVNLT-------------------GLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
            E L NLT                    L NL  L L + Q+G   ++ LS LTNL S++
Sbjct: 196 IEVLSNLTNLTVLDLGYNQISDIKVLSNLTNLTYLSLWNNQIG--DIKVLSNLTNLTSLS 253

Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
           L    ISD  ++ L+ L++L SL L   QI+D  +  L++LT LT+L L+  +I D    
Sbjct: 254 LWDNQISD--IKPLSNLTNLTSLYLWDNQISD--IKPLSNLTNLTYLYLWDNQIADIKP- 308

Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN--------CNLTDKT----- 437
            L N  NL  L++    + D  +K + +L+SLT L+LS+N         NLT+ T     
Sbjct: 309 -LSNLTNLTDLDLSKNQIGD--IKPLSNLTSLTSLDLSKNQIADIKPLSNLTNLTSLSLW 365

Query: 438 ------LELISGLTGLVSLNVSNSRIT 458
                 +EL+S LT L SL++S ++I+
Sbjct: 366 RNQSIDIELLSNLTNLTSLDLSENQIS 392



 Score = 46.2 bits (108), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 34/167 (20%)

Query: 48  WMDVIA-----SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
           W + IA     S  ++L  +DLS + + D  +  L + ++L SLD +   QI+D  ++ L
Sbjct: 299 WDNQIADIKPLSNLTNLTDLDLSKNQIGD--IKPLSNLTSLTSLDLSKN-QIAD--IKPL 353

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
             L+NLTSLS  RN +I    ++  + L NL  LDL         + ++K L  L +L  
Sbjct: 354 SNLTNLTSLSLWRNQSI---DIELLSNLTNLTSLDLS-----ENQISDIKPLSNLTNL-- 403

Query: 163 KWCNCITD--------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
                 TD        SD+KPLS LT L+ LQI  + + D    ++ 
Sbjct: 404 ------TDIDLSENQISDIKPLSNLTKLEDLQIQNNPILDKICPFIP 444


>gi|290985427|ref|XP_002675427.1| predicted protein [Naegleria gruberi]
 gi|284089023|gb|EFC42683.1| predicted protein [Naegleria gruberi]
          Length = 324

 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 153/316 (48%), Gaps = 26/316 (8%)

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
           + +L SLNI   N I D + K +S +  L SL IS + + D G   +  +++LT LN+  
Sbjct: 24  MKQLISLNI-GKNEIGDEEAKLISEMKQLTSLNISDNLIGDEGAKLISEMKQLTSLNICC 82

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
             +       LS +  L  LN+   ++ D+G +  S+   L  LN+GF +I         
Sbjct: 83  NRIGVEGAKYLSEMKQLISLNICENEIGDEGAKLISETRQLTSLNIGFTQI--------- 133

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
                          G EG   ++ +  L  L++SD  +G  G + +S +  L S+N+S 
Sbjct: 134 ---------------GGEGAKFISEMKQLTSLDISDNLIGVEGAKFISEMKQLTSLNISD 178

Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
             I D   + ++ +  L SLN+   QI   G+  ++ +  LT LD+   +I D GA  + 
Sbjct: 179 NLIGDEGAKLISEMKQLTSLNISNNQIGGEGVKLISEMKQLTSLDISNNQIGDEGAKLIS 238

Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
             K L SL I G  + D G K + ++  L  L++S N  + D+  +LIS +  L+SLN+ 
Sbjct: 239 EMKQLTSLNISGNRIGDEGAKSMSEMKQLKSLDISYN-QIGDEGTKLISEMKQLISLNIR 297

Query: 454 NSRITSAGLRHLNHAR 469
            +RI   G++++   +
Sbjct: 298 ANRIGDEGVKYIREMK 313



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 126/252 (50%), Gaps = 1/252 (0%)

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
           + +L SLNI  CN I     K LS +  L SL I  +++ D G   +   ++LT LN+  
Sbjct: 72  MKQLTSLNI-CCNRIGVEGAKYLSEMKQLISLNICENEIGDEGAKLISETRQLTSLNIGF 130

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
             +       +S +  L  L+++   +  +G +  S++  L  LN+  N I DE    + 
Sbjct: 131 TQIGGEGAKFISEMKQLTSLDISDNLIGVEGAKFISEMKQLTSLNISDNLIGDEGAKLIS 190

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
            +  L SLN+ +  IG EG+  ++ +  L  L++S+ Q+G  G + +S +  L S+N+S 
Sbjct: 191 EMKQLTSLNISNNQIGGEGVKLISEMKQLTSLDISNNQIGDEGAKLISEMKQLTSLNISG 250

Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
             I D   + ++ +  LKSL++   QI D G   ++ +  L  L++   RI D G  Y+R
Sbjct: 251 NRIGDEGAKSMSEMKQLKSLDISYNQIGDEGTKLISEMKQLISLNIRANRIGDEGVKYIR 310

Query: 394 NFKNLRSLEICG 405
             K L SL   G
Sbjct: 311 EMKQLTSLTYKG 322



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 132/267 (49%), Gaps = 2/267 (0%)

Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
           +++LT L++ G  +       +S +  L  LN+ + ++ D+  +  S++  L  LN+  N
Sbjct: 1   MKQLTSLDISGNGIGDEA-KLISEMKQLISLNIGKNEIGDEEAKLISEMKQLTSLNISDN 59

Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
            I DE    +  +  L SLN+    IG EG   L+ +  L  L + + ++G  G + +S 
Sbjct: 60  LIGDEGAKLISEMKQLTSLNICCNRIGVEGAKYLSEMKQLISLNICENEIGDEGAKLISE 119

Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
              L S+N+ FT I     + ++ +  L SL++    I   G   ++ +  LT L++   
Sbjct: 120 TRQLTSLNIGFTQIGGEGAKFISEMKQLTSLDISDNLIGVEGAKFISEMKQLTSLNISDN 179

Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
            I D GA  +   K L SL I    +   GVK I ++  LT L++S N  + D+  +LIS
Sbjct: 180 LIGDEGAKLISEMKQLTSLNISNNQIGGEGVKLISEMKQLTSLDISNN-QIGDEGAKLIS 238

Query: 443 GLTGLVSLNVSNSRITSAGLRHLNHAR 469
            +  L SLN+S +RI   G + ++  +
Sbjct: 239 EMKQLTSLNISGNRIGDEGAKSMSEMK 265


>gi|290974856|ref|XP_002670160.1| predicted protein [Naegleria gruberi]
 gi|284083716|gb|EFC37416.1| predicted protein [Naegleria gruberi]
          Length = 376

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 172/341 (50%), Gaps = 6/341 (1%)

Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
           L N+  L LER  R       + GLMK L  L+ +  NCI    +K +  + NL  L I 
Sbjct: 35  LENIENLRLERNNRFFD--CQIIGLMKGLTVLSAE--NCIGTEGVKHICKMNNLTKLNIE 90

Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
            +++ + G  Y+  +++LT LN+    +    ++ +S L +L  L +  C++ D+G +  
Sbjct: 91  RNEIGEEGAKYISKMKQLTELNVGWNGIGKEGVEFISELKNLTLLEIEACRICDEGAKSI 150

Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
           S++  L  LN+ +N I++    +L  L  L  L L  C I +EG   ++ L  L  L++S
Sbjct: 151 SELKQLTHLNISYNNISNLGSKYLTELKQLTVLTLCDCNISEEGCKYISELNQLTDLDIS 210

Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
           +  +G +G+ ++SG+  L  + +  T +    L+K++ +  + +LN+    + D G   +
Sbjct: 211 NNDIGCNGVEYISGMKQLLFLYIYGTNMYPTELQKISEMKQVTNLNISWNYVGDEGAKYI 270

Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
           + +  LT L++  + I+  GA ++   K L  L I    +   G   I  ++ L +L++S
Sbjct: 271 SDMKQLTKLEVVRSDISTEGAKHISELKQLTDLNIGENNIGGEGAIAISKMNQLRILDIS 330

Query: 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
            N N+     E +S +  L  L++S++ I + G + +N  +
Sbjct: 331 DN-NIGGIGAEHVSQMKQLTHLDISHNCIGNYGAKRINTMK 370



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 154/330 (46%), Gaps = 30/330 (9%)

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
           ++GL+ L++      N I  +G+K    + NL KL++ER      G   +  + +L  LN
Sbjct: 58  MKGLTVLSA-----ENCIGTEGVKHICKMNNLTKLNIERNEIGEEGAKYISKMKQLTELN 112

Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
           + W N I    ++ +S L NL  L+I   ++ D G   +  L++LT LN+    ++    
Sbjct: 113 VGW-NGIGKEGVEFISELKNLTLLEIEACRICDEGAKSISELKQLTHLNISYNNISNLGS 171

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
             L+ L  L  L L  C +S++GC+  S++          N++TD              L
Sbjct: 172 KYLTELKQLTVLTLCDCNISEEGCKYISEL----------NQLTD--------------L 207

Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
           ++ +  IG  G+  ++G+  L  L +  T +  + L+ +S +  + ++N+S+  + D   
Sbjct: 208 DISNNDIGCNGVEYISGMKQLLFLYIYGTNMYPTELQKISEMKQVTNLNISWNYVGDEGA 267

Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
           + ++ +  L  L +    I+  G   ++ L  LT L++    I   GA  +     LR L
Sbjct: 268 KYISDMKQLTKLEVVRSDISTEGAKHISELKQLTDLNIGENNIGGEGAIAISKMNQLRIL 327

Query: 402 EICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
           +I    +   G +H+  +  LT L++S NC
Sbjct: 328 DISDNNIGGIGAEHVSQMKQLTHLDISHNC 357



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 141/303 (46%), Gaps = 2/303 (0%)

Query: 94  ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
           I   G++H+  ++NLT L+  R N I  +G K  + +  L +L++        G+  +  
Sbjct: 70  IGTEGVKHICKMNNLTKLNIER-NEIGEEGAKYISKMKQLTELNVGWNGIGKEGVEFISE 128

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
           L  L  L I+ C  I D   K +S L  L  L IS + +++ G  YL  L++LT+L L  
Sbjct: 129 LKNLTLLEIEACR-ICDEGAKSISELKQLTHLNISYNNISNLGSKYLTELKQLTVLTLCD 187

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
           C ++      +S L  L  L+++   +  +G E  S +  L  L +    +    L  + 
Sbjct: 188 CNISEEGCKYISELNQLTDLDISNNDIGCNGVEYISGMKQLLFLYIYGTNMYPTELQKIS 247

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
            +  + +LN+    +GDEG   ++ +  L  LE+  + + + G +H+S L  L  +N+  
Sbjct: 248 EMKQVTNLNISWNYVGDEGAKYISDMKQLTKLEVVRSDISTEGAKHISELKQLTDLNIGE 307

Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
             I       ++ ++ L+ L++    I   G   ++ +  LTHLD+    I + GA  + 
Sbjct: 308 NNIGGEGAIAISKMNQLRILDISDNNIGGIGAEHVSQMKQLTHLDISHNCIGNYGAKRIN 367

Query: 394 NFK 396
             K
Sbjct: 368 TMK 370


>gi|290984863|ref|XP_002675146.1| LRR_RI domain-containing protein [Naegleria gruberi]
 gi|284088740|gb|EFC42402.1| LRR_RI domain-containing protein [Naegleria gruberi]
          Length = 458

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 177/379 (46%), Gaps = 32/379 (8%)

Query: 81  SNLQSLDFNFCIQISD-GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
            N+QSL+ N      D   LE +  L+NLT  S  RN     +G K    L  L  L++E
Sbjct: 102 QNIQSLNVNQYFNTFDCHVLEFMGSLNNLTIRSKIRN-----EGAKCIPQLKQLTNLNVE 156

Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
                                     N I +  +K  S L +L +  I  +K+ D G  Y
Sbjct: 157 D-------------------------NKIGNEGVKCFSELKHLTNFNIRNNKIMDEGAKY 191

Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
           +  + +LT +N+    +     + +S +  L  LN++  ++ D G    S++  L  L++
Sbjct: 192 ISQMSQLTCMNIGNNNIGEPGAEYISQMKQLTNLNIHGNRIGDKGARHISEMEGLTHLDI 251

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
           G+N + +    +L  +  L  L ++   + + G   ++ L  L  L +    +G +G R+
Sbjct: 252 GYNNLGNLGSQYLSQMKKLTYLFIEGNRLDENGAKFVSELKQLTILCIGANGIGPNGARY 311

Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
           ++ +  L  +++    I +   R L  ++ L +LN+   ++   G   ++ +  LT LD+
Sbjct: 312 ITEMKQLTDLSIGGAKIGEEGARHLKTMNQLTNLNIGYNRLGSIGAKFISEMKQLTSLDI 371

Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
           F   I D GA ++   KNLR L+I    +TD G K++  L+ LT L+++ N NL+D+  +
Sbjct: 372 FYNNIEDEGAKHISELKNLRKLDIGRNNITDEGAKYVSQLNQLTHLSITYN-NLSDEGAK 430

Query: 440 LISGLTGLVSLNVSNSRIT 458
            I+ +T L  L++  + I+
Sbjct: 431 YINTMTQLTKLDIGGNAIS 449



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 156/318 (49%), Gaps = 2/318 (0%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           +I + G + +  L  LT+L+   +N I  +G+K F+ L +L   ++     +  G   + 
Sbjct: 135 KIRNEGAKCIPQLKQLTNLNVE-DNKIGNEGVKCFSELKHLTNFNIRNNKIMDEGAKYIS 193

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
            + +L  +NI   N I +   + +S +  L +L I  +++ D G  ++  ++ LT L++ 
Sbjct: 194 QMSQLTCMNI-GNNNIGEPGAEYISQMKQLTNLNIHGNRIGDKGARHISEMEGLTHLDIG 252

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
              +       LS +  L YL +   +L ++G +  S++  L +L +G N I      ++
Sbjct: 253 YNNLGNLGSQYLSQMKKLTYLFIEGNRLDENGAKFVSELKQLTILCIGANGIGPNGARYI 312

Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
             +  L  L++    IG+EG  +L  +  L  L +   ++GS G + +S +  L S+++ 
Sbjct: 313 TEMKQLTDLSIGGAKIGEEGARHLKTMNQLTNLNIGYNRLGSIGAKFISEMKQLTSLDIF 372

Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
           +  I D   + ++ L +L+ L++    ITD G   ++ L  LTHL +    ++D GA Y+
Sbjct: 373 YNNIEDEGAKHISELKNLRKLDIGRNNITDEGAKYVSQLNQLTHLSITYNNLSDEGAKYI 432

Query: 393 RNFKNLRSLEICGGGLTD 410
                L  L+I G  ++D
Sbjct: 433 NTMTQLTKLDIGGNAISD 450



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 143/299 (47%), Gaps = 1/299 (0%)

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           I +   K +  L  L +L +  +K+ + G+     L+ LT  N+    +       +S +
Sbjct: 136 IRNEGAKCIPQLKQLTNLNVEDNKIGNEGVKCFSELKHLTNFNIRNNKIMDEGAKYISQM 195

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
             L  +N+    + + G E  S++  L  LN+  N I D+   H+  +  L  L++    
Sbjct: 196 SQLTCMNIGNNNIGEPGAEYISQMKQLTNLNIHGNRIGDKGARHISEMEGLTHLDIGYNN 255

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           +G+ G   L+ +  L  L +   ++  +G + +S L  L  + +   GI     R +  +
Sbjct: 256 LGNLGSQYLSQMKKLTYLFIEGNRLDENGAKFVSELKQLTILCIGANGIGPNGARYITEM 315

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
             L  L++   +I + G   L ++  LT+L++   R+   GA ++   K L SL+I    
Sbjct: 316 KQLTDLSIGGAKIGEEGARHLKTMNQLTNLNIGYNRLGSIGAKFISEMKQLTSLDIFYNN 375

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
           + D G KHI +L +L  L++ +N N+TD+  + +S L  L  L+++ + ++  G +++N
Sbjct: 376 IEDEGAKHISELKNLRKLDIGRN-NITDEGAKYVSQLNQLTHLSITYNNLSDEGAKYIN 433



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 112/242 (46%), Gaps = 11/242 (4%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           SQ   L ++++ G+ + D G  H+ +   L  LD  +   + + G ++L  +  LT L F
Sbjct: 217 SQMKQLTNLNIHGNRIGDKGARHISEMEGLTHLDIGYN-NLGNLGSQYLSQMKKLTYL-F 274

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHG----GLVNLKGLMKLESLNIKWCNCIT 169
              N +   G K  + L  L  L    C   +G    G   +  + +L  L+I     I 
Sbjct: 275 IEGNRLDENGAKFVSELKQLTIL----CIGANGIGPNGARYITEMKQLTDLSIGGAK-IG 329

Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
           +   + L  +  L +L I  +++   G  ++  +++LT L++    +       +S L +
Sbjct: 330 EEGARHLKTMNQLTNLNIGYNRLGSIGAKFISEMKQLTSLDIFYNNIEDEGAKHISELKN 389

Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
           L  L++ R  ++D+G +  S++  L  L++ +N ++DE   ++  +T L  L++    I 
Sbjct: 390 LRKLDIGRNNITDEGAKYVSQLNQLTHLSITYNNLSDEGAKYINTMTQLTKLDIGGNAIS 449

Query: 290 DE 291
           D+
Sbjct: 450 DD 451


>gi|356513289|ref|XP_003525346.1| PREDICTED: uncharacterized protein LOC100814174 [Glycine max]
          Length = 589

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 133/473 (28%), Positives = 199/473 (42%), Gaps = 93/473 (19%)

Query: 25  LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNL 83
           LE F+  A +    G    V+ +WM  + +    L  ++LS    V+ S L  +   S+L
Sbjct: 58  LEVFKHSAEEVDVRGDN-SVDAEWMAYLGAY-RHLRYLNLSDCHRVSTSALWPITGMSSL 115

Query: 84  QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
           Q LD + C +++D G+ H+  + NL  L      ++TA+G+K  A L NL  LDL     
Sbjct: 116 QELDLSRCFKVNDAGINHILSIPNLERLRISET-SVTAKGVKLLASLKNLSLLDL----- 169

Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
             GGL                   + D  +  L  L  L  + +  SK+++ G + L   
Sbjct: 170 --GGL------------------PVDDVALTSLQVLKRLHYIDLWGSKISNKGASVLNTF 209

Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ----LSDD----------GCEKFS 249
            KLT LNL    VT      L  L  L YLN++ C     L DD          G    +
Sbjct: 210 PKLTYLNLAWTSVT-----KLPKLSFLEYLNMSNCTIDSILEDDKAPLAKLILSGAMFMN 264

Query: 250 KIGSLKVLNLGFNEITDEC------LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC--N 301
           +  +L   N  F    D           L  +  +E LNL SC +GD+  V +      N
Sbjct: 265 EAEALLYANTNFLSFLDVANSSFHRFFFLSKMKVIEHLNLSSCMMGDDS-VEMVACAGGN 323

Query: 302 LKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKS-------- 352
           LK L LS T+V S+GL  L+G + +LE ++LS T + D ++  ++ + SLK         
Sbjct: 324 LKSLNLSGTRVSSAGLGILAGHVPHLEILSLSQTPVDDTAISFISMMPSLKDVDLSNTNI 383

Query: 353 ---------------------------LNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
                                      LNL+  Q+ D  L  L+S   L +L L  A + 
Sbjct: 384 KGFLHQGRTDVNSLLSLMALQNLKLERLNLEHTQVRDEALYPLSSFQELRYLSLKSASLA 443

Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
           D    YL +   L +L IC   LT+ G+   K   +L LL+L     LT+ T+
Sbjct: 444 DISLYYLSSIPKLTNLSICDAVLTNYGLDMFKAPETLKLLDLKGCWLLTEDTI 496



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 176/408 (43%), Gaps = 66/408 (16%)

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSD 172
           R +N++ A+ M       +L  L+L  C R+    L  + G+  L+ L++  C  + D+ 
Sbjct: 71  RGDNSVDAEWMAYLGAYRHLRYLNLSDCHRVSTSALWPITGMSSLQELDLSRCFKVNDAG 130

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           +  +  + NL+ L+IS + VT  G+  L  L+ L+LL+L G PV    L SL  L  L Y
Sbjct: 131 INHILSIPNLERLRISETSVTAKGVKLLASLKNLSLLDLGGLPVDDVALTSLQVLKRLHY 190

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI---- 288
           ++L   ++S+ G    +    L  LNL +  +T      L  L+ LE LN+ +C I    
Sbjct: 191 IDLWGSKISNKGASVLNTFPKLTYLNLAWTSVTK-----LPKLSFLEYLNMSNCTIDSIL 245

Query: 289 -------------------------------------GDEGLVNLTGLCNLKCLE---LS 308
                                                 +        L  +K +E   LS
Sbjct: 246 EDDKAPLAKLILSGAMFMNEAEALLYANTNFLSFLDVANSSFHRFFFLSKMKVIEHLNLS 305

Query: 309 DTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLA 366
              +G   +  ++    NL+S+NLS T +S   L  LAG +  L+ L+L    + DT ++
Sbjct: 306 SCMMGDDSVEMVACAGGNLKSLNLSGTRVSSAGLGILAGHVPHLEILSLSQTPVDDTAIS 365

Query: 367 ALTSLTGLTHLDLFGARI--------TDSGA----AYLRNFKNLRSLEICGGGLTDAGVK 414
            ++ +  L  +DL    I        TD  +      L+N K L  L +    + D  + 
Sbjct: 366 FISMMPSLKDVDLSNTNIKGFLHQGRTDVNSLLSLMALQNLK-LERLNLEHTQVRDEALY 424

Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
            +     L  L+L ++ +L D +L  +S +  L +L++ ++ +T+ GL
Sbjct: 425 PLSSFQELRYLSL-KSASLADISLYYLSSIPKLTNLSICDAVLTNYGL 471


>gi|149176763|ref|ZP_01855374.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
 gi|148844404|gb|EDL58756.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
          Length = 416

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 139/277 (50%), Gaps = 3/277 (1%)

Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
           +TD G  YLK  QKL  L + G  +T   L+ L+ + SL  L L+   ++ D     +  
Sbjct: 129 ITDQGATYLKQ-QKLGHLGITGGSMTDNGLNELAEMNSLRTLGLHHLAITGDQLPP-NTF 186

Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
             LK+L+L     T++ L +L    +L  L+L +  +   GL  L+   NL+ L L + +
Sbjct: 187 PKLKMLDLSDTRFTNQGLKNLSPNASLVYLHLSNTNVSSAGLQELSKFPNLRALRLGNLK 246

Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
           + ++    L+ +  L  ++L  T ++D    +L+ L  +  L LD  QITD GL  L ++
Sbjct: 247 IKAAAFAKLANMKRLYQLDLQGTAVNDAVALQLSQLDQITQLRLDQSQITDQGLRHLATM 306

Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
             L  L L GA+ITDSG   L     L  L++    ++D G++ +  + +L +LNLS N 
Sbjct: 307 KNLETLFLPGAKITDSGLKVLSQLPKLDYLDLSDTQISDEGLRQLSKIPALRMLNLS-NT 365

Query: 432 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHA 468
            +TD+  +++     L S+   N+ I+   +  +  A
Sbjct: 366 RVTDQAKQILLQFPALESIEAFNTSISPVTIEDIRDA 402



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 123/252 (48%), Gaps = 1/252 (0%)

Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
            +TD+ +  L+ + +L++L +    +T   +       KL +L+L     T   L +LS 
Sbjct: 151 SMTDNGLNELAEMNSLRTLGLHHLAITGDQLPP-NTFPKLKMLDLSDTRFTNQGLKNLSP 209

Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
             SL YL+L+   +S  G ++ SK  +L+ L LG  +I       L  +  L  L+L   
Sbjct: 210 NASLVYLHLSNTNVSSAGLQELSKFPNLRALRLGNLKIKAAAFAKLANMKRLYQLDLQGT 269

Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
            + D   + L+ L  +  L L  +Q+   GLRHL+ + NLE++ L    I+D  L+ L+ 
Sbjct: 270 AVNDAVALQLSQLDQITQLRLDQSQITDQGLRHLATMKNLETLFLPGAKITDSGLKVLSQ 329

Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
           L  L  L+L   QI+D GL  L+ +  L  L+L   R+TD     L  F  L S+E    
Sbjct: 330 LPKLDYLDLSDTQISDEGLRQLSKIPALRMLNLSNTRVTDQAKQILLQFPALESIEAFNT 389

Query: 407 GLTDAGVKHIKD 418
            ++   ++ I+D
Sbjct: 390 SISPVTIEDIRD 401



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 147/320 (45%), Gaps = 42/320 (13%)

Query: 32  ALQDLCLGQYPGVNDKWMDVIASQGSSLLS------VDLSGSDVTDSGLIHLKDCSNLQS 85
           ++Q+L LG     N     +I  QG++ L       + ++G  +TD+GL  L + ++L++
Sbjct: 114 SIQNLTLG-----NPHNPTIITDQGATYLKQQKLGHLGITGGSMTDNGLNELAEMNSLRT 168

Query: 86  LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
           L           GL HL               AIT   +        L  LDL      +
Sbjct: 169 L-----------GLHHL---------------AITGDQLPP-NTFPKLKMLDLSDTRFTN 201

Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
            GL NL     L  L++   N ++ + ++ LS   NL++L++   K+  +  A L  +++
Sbjct: 202 QGLKNLSPNASLVYLHLSNTN-VSSAGLQELSKFPNLRALRLGNLKIKAAAFAKLANMKR 260

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
           L  L+L+G  V  A    LS L  +  L L++ Q++D G    + + +L+ L L   +IT
Sbjct: 261 LYQLDLQGTAVNDAVALQLSQLDQITQLRLDQSQITDQGLRHLATMKNLETLFLPGAKIT 320

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG---LRHLSG 322
           D  L  L  L  L+ L+L    I DEGL  L+ +  L+ L LS+T+V       L     
Sbjct: 321 DSGLKVLSQLPKLDYLDLSDTQISDEGLRQLSKIPALRMLNLSNTRVTDQAKQILLQFPA 380

Query: 323 LTNLESINLSFTGISDGSLR 342
           L ++E+ N S + ++   +R
Sbjct: 381 LESIEAFNTSISPVTIEDIR 400


>gi|59802548|gb|AAX07514.1| putative regulatory subunit [Gemmata sp. Wa1-1]
          Length = 250

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/192 (38%), Positives = 104/192 (54%)

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
           +++D   ++ + + +L  LNL   ++TD  L  L  LT L  L L    + D GL  L  
Sbjct: 30  KVTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDAGLKELAP 89

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
           L NL  LEL  TQV  +GL+ L+ LTNL  + L  T ++D  L++LA L SL  L L   
Sbjct: 90  LTNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLTLLELGET 149

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
           QIT+ G+  L   T LT LDL   R+TD+G   L  F  L  L + G  +TD  +K +  
Sbjct: 150 QITEAGIKELAPFTKLTRLDLSITRVTDAGVKGLAPFTKLTQLNLGGTLVTDTCLKDLAP 209

Query: 419 LSSLTLLNLSQN 430
           L +L  L+LS+N
Sbjct: 210 LKNLAFLSLSRN 221



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/207 (37%), Positives = 111/207 (53%), Gaps = 2/207 (0%)

Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
           S+  +  KVTD+ +  L  L+ LT LNL    VT A L  LS L  L +L L + +++D 
Sbjct: 23  SVDFALWKVTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDA 82

Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
           G ++ + + +L  L LG  ++TD  L  L  LTNL  L L S  + D GL  L  L +L 
Sbjct: 83  GLKELAPLTNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLT 142

Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
            LEL +TQ+  +G++ L+  T L  ++LS T ++D  ++ LA  + L  LNL    +TDT
Sbjct: 143 LLELGETQITEAGIKELAPFTKLTRLDLSITRVTDAGVKGLAPFTKLTQLNLGGTLVTDT 202

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAA 390
            L  L  L  L  L L  +R    GAA
Sbjct: 203 CLKDLAPLKNLAFLSL--SRNERDGAA 227



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/183 (37%), Positives = 98/183 (53%)

Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
           VT A L  L+ L +L  LNL   +++D G ++ S +  L  L L   ++TD  L  L  L
Sbjct: 31  VTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDAGLKELAPL 90

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
           TNL +L L S  + D GL  L  L NL  L L  TQV  +GL+ L+ L +L  + L  T 
Sbjct: 91  TNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLTLLELGETQ 150

Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
           I++  +++LA  + L  L+L   ++TD G+  L   T LT L+L G  +TD+    L   
Sbjct: 151 ITEAGIKELAPFTKLTRLDLSITRVTDAGVKGLAPFTKLTQLNLGGTLVTDTCLKDLAPL 210

Query: 396 KNL 398
           KNL
Sbjct: 211 KNL 213



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 111/231 (48%), Gaps = 29/231 (12%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHLRGLSNLTSLS 112
           + G  ++SVD +   VTD+ L  L    NL  L  N C+ +++D GL+ L  L+ LT L 
Sbjct: 16  APGKPVISVDFALWKVTDADLKELAPLKNLTQL--NLCLTKVTDAGLKELSPLTKLTHLC 73

Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
             +   +T  G+K  A L NL  L+L                             +TD+ 
Sbjct: 74  LMQTK-VTDAGLKELAPLTNLTTLEL-------------------------GSTQVTDAG 107

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           +K L+ LTNL  L +  ++VTD+G+  L  L+ LTLL L    +T A +  L+    L  
Sbjct: 108 LKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLTLLELGETQITEAGIKELAPFTKLTR 167

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           L+L+  +++D G +  +    L  LNLG   +TD CL  L  L NL  L+L
Sbjct: 168 LDLSITRVTDAGVKGLAPFTKLTQLNLGGTLVTDTCLKDLAPLKNLAFLSL 218



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 90/155 (58%), Gaps = 1/155 (0%)

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
           +V  + L+ L+ L NL  +NL  T ++D  L++L+ L+ L  L L   ++TD GL  L  
Sbjct: 30  KVTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDAGLKELAP 89

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           LT LT L+L   ++TD+G   L    NL  L +    +TDAG+K +  L SLTLL L + 
Sbjct: 90  LTNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLTLLELGET 149

Query: 431 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
             +T+  ++ ++  T L  L++S +R+T AG++ L
Sbjct: 150 -QITEAGIKELAPFTKLTRLDLSITRVTDAGVKGL 183



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 83/138 (60%), Gaps = 1/138 (0%)

Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
           S++ +   ++D  L++LA L +L  LNL   ++TD GL  L+ LT LTHL L   ++TD+
Sbjct: 23  SVDFALWKVTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDA 82

Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
           G   L    NL +LE+    +TDAG+K +  L++LT+L L  +  +TD  L+ ++ L  L
Sbjct: 83  GLKELAPLTNLTTLELGSTQVTDAGLKELAPLTNLTVLTLG-STQVTDAGLKELAPLKSL 141

Query: 448 VSLNVSNSRITSAGLRHL 465
             L +  ++IT AG++ L
Sbjct: 142 TLLELGETQITEAGIKEL 159



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 84/174 (48%), Gaps = 9/174 (5%)

Query: 19  CLTEVSLEAFRDCA----LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGL 74
           CLT+V+    ++ +    L  LCL Q   V D  +  +A   ++L +++L  + VTD+GL
Sbjct: 51  CLTKVTDAGLKELSPLTKLTHLCLMQT-KVTDAGLKELAPL-TNLTTLELGSTQVTDAGL 108

Query: 75  IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
             L   +NL  L      Q++D GL+ L  L +LT L       IT  G+K  A    L 
Sbjct: 109 KELAPLTNLTVLTLG-STQVTDAGLKELAPLKSLTLLELGETQ-ITEAGIKELAPFTKLT 166

Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
           +LDL        G+  L    KL  LN+     +TD+ +K L+ L NL  L +S
Sbjct: 167 RLDLSITRVTDAGVKGLAPFTKLTQLNL-GGTLVTDTCLKDLAPLKNLAFLSLS 219


>gi|290993162|ref|XP_002679202.1| predicted protein [Naegleria gruberi]
 gi|284092818|gb|EFC46458.1| predicted protein [Naegleria gruberi]
          Length = 345

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 165/339 (48%), Gaps = 8/339 (2%)

Query: 121 AQGMKAFAGLINLVKLDLERC-TRIHGGLVNLKGLMKLE-SLNIKWCNCITDSDMKPLSG 178
            Q  K   GL  L +L +     R  G +  LK L  L    N  WC   T   +K    
Sbjct: 13  EQDAKYIGGLKQLTRLTIYSSHIRDIGKISELKQLTYLNVPANGIWC--YTTKQVKEFKQ 70

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           LT   +L I  ++V   G  Y+  L++LT L+++   +    ++ LS L  L YLN++  
Sbjct: 71  LT---TLIIDQNQVGSEGCKYISELKQLTSLSIDENFIYDEGVEYLSELAQLTYLNISNN 127

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
            +  +GC+   K+  L  L    N I  E   ++  L  L+ L++    IGD+GL ++  
Sbjct: 128 GVGSEGCKYVGKMKRLTSLGFYNNRIGKEGAKYISTLNQLKQLDISRTNIGDKGLEHIGQ 187

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
           L  L  L+L   ++G+ G ++LS L  L  +N+S   I +  ++ +  L  L +L ++  
Sbjct: 188 LSQLTSLDLYCNKIGNGGAKYLSELKQLTYLNISENHIGNEGIKYIGELKQLVNLIINNN 247

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
           +I + G+  +  L  LT+L++   RI + G  Y+ + K L ++ I    +   G K+I  
Sbjct: 248 RIGNDGVKYIGELKQLTYLNISENRIGNEGIKYIGDLKQLTNIIISRNWIGSEGAKYIGK 307

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
           LS LT L LS N N+ ++  + +S L  L  LN+  ++I
Sbjct: 308 LSQLTSLGLSSN-NIDNEGAKYLSELKELSFLNIERNKI 345



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 91/184 (49%), Gaps = 3/184 (1%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           + L  +D+S +++ D GL H+   S L SLD  +C +I +GG ++L  L  LT L+   N
Sbjct: 165 NQLKQLDISRTNIGDKGLEHIGQLSQLTSLDL-YCNKIGNGGAKYLSELKQLTYLNISEN 223

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           + I  +G+K    L  LV L +      + G+  +  L +L  LNI   N I +  +K +
Sbjct: 224 H-IGNEGIKYIGELKQLVNLIINNNRIGNDGVKYIGELKQLTYLNIS-ENRIGNEGIKYI 281

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
             L  L ++ IS + +   G  Y+  L +LT L L    +       LS L  L +LN+ 
Sbjct: 282 GDLKQLTNIIISRNWIGSEGAKYIGKLSQLTSLGLSSNNIDNEGAKYLSELKELSFLNIE 341

Query: 237 RCQL 240
           R ++
Sbjct: 342 RNKI 345



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 3/128 (2%)

Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
           + + GL  L  L + +  I D G   ++ L  LT+L++    I       ++ FK L +L
Sbjct: 17  KYIGGLKQLTRLTIYSSHIRDIG--KISELKQLTYLNVPANGIWCYTTKQVKEFKQLTTL 74

Query: 402 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
            I    +   G K+I +L  LT L++ +N  + D+ +E +S L  L  LN+SN+ + S G
Sbjct: 75  IIDQNQVGSEGCKYISELKQLTSLSIDENF-IYDEGVEYLSELAQLTYLNISNNGVGSEG 133

Query: 462 LRHLNHAR 469
            +++   +
Sbjct: 134 CKYVGKMK 141


>gi|300704275|ref|YP_003745878.1| leucine-rich-repeat type III effector protein (gala6) [Ralstonia
           solanacearum CFBP2957]
 gi|299071939|emb|CBJ43268.1| leucine-rich-repeat type III effector protein (GALA6) [Ralstonia
           solanacearum CFBP2957]
          Length = 519

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 148/477 (31%), Positives = 220/477 (46%), Gaps = 37/477 (7%)

Query: 4   RDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVN------DKWMDVIASQGS 57
           R++++++ N    SR +  V+    RD A+    LG+YP +       +  ++ + +   
Sbjct: 2   REVNRELRN---ASRAV--VTHLTIRDPAMF-AHLGKYPALTSVRFKGELTLEALKALPP 55

Query: 58  SLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
            +  +D+S   G  V+++GL HL     L+SL  N  I+I   G   L   ++LTSLS  
Sbjct: 56  GVEHLDISRCTGRGVSNAGLAHLA-TRPLKSLSLN-GIEIDAEGARLLATCASLTSLSLT 113

Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--------MKLESLNIKWCN 166
              +I  +   A A   ++  LDL          VN+ G           L SLN+   N
Sbjct: 114 -GCSIGDRAATALAQSRSIASLDLS---------VNMIGPDGARALASAPLVSLNLH-NN 162

Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
            I D     L+    LKSL  S + + D+G+        LT LNL G  +  A   +L  
Sbjct: 163 GIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTVLTQLNLAGNMIGPAGARALRR 222

Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
             SL  L+L+  +L D G +  +   SL  LN+  NEI D+    L   T L+SLNL   
Sbjct: 223 NTSLTELDLSTNRLGDAGAQALAGSRSLTSLNVRSNEIGDDGTEALARNTTLKSLNLSYN 282

Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
            IG  G   L G   L+ L+L    +   G   L+  T+L S++L    I D   R LA 
Sbjct: 283 PIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLGSNRIGDDGARALAT 342

Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
             +L  L+L    I D G  AL     LT L+L+G  + D GAA L     L SL +   
Sbjct: 343 SRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAALAQHPRLTSLNLGRN 402

Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
            +   G +H+   ++LT L+LS+N  L  +  E +S  T L +LNVS++ I  AG R
Sbjct: 403 RIGPNGAQHLAKSATLTELDLSEN-RLGPEGAEALSLSTVLTTLNVSDNAIGEAGAR 458



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 167/413 (40%), Gaps = 77/413 (18%)

Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
           HL     LTS+ F+    +T + +KA    +    LD+ RCT   G  V+  GL  L + 
Sbjct: 29  HLGKYPALTSVRFK--GELTLEALKALPPGVE--HLDISRCT---GRGVSNAGLAHLAT- 80

Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
                        +PL      KSL ++  ++   G   L     LT L+L GC +    
Sbjct: 81  -------------RPL------KSLSLNGIEIDAEGARLLATCASLTSLSLTGCSIGDRA 121

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
             +L+   S+  L+L+   +  DG    +    L  LNL  N I DE  + L     L+S
Sbjct: 122 ATALAQSRSIASLDLSVNMIGPDGARALAS-APLVSLNLHNNGIGDEGALALATSGTLKS 180

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           LN  + GIGD G++       L  L L+   +G +G R L   T+L  ++LS   + D  
Sbjct: 181 LNASNNGIGDAGVLGFADNTVLTQLNLAGNMIGPAGARALRRNTSLTELDLSTNRLGDAG 240

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL----------------------- 377
            + LAG  SL SLN+ + +I D G  AL   T L  L                       
Sbjct: 241 AQALAGSRSLTSLNVRSNEIGDDGTEALARNTTLKSLNLSYNPIGFWGAGALGGSTTLRE 300

Query: 378 --------DLFGA-----------------RITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
                   D +GA                 RI D GA  L   + L  L++    + DAG
Sbjct: 301 LDLRCCAIDPYGASALARNTSLASLHLGSNRIGDDGARALATSRTLTLLDLSRNNIHDAG 360

Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
            + +    SLT LNL  N  + D     ++    L SLN+  +RI   G +HL
Sbjct: 361 AQALAGNGSLTSLNLYGN-EVDDDGAAALAQHPRLTSLNLGRNRIGPNGAQHL 412



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 149/334 (44%), Gaps = 4/334 (1%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           + L+S++L  + + D G + L     L+SL+ +    I D G+      + LT L+    
Sbjct: 152 APLVSLNLHNNGIGDEGALALATSGTLKSLNASNN-GIGDAGVLGFADNTVLTQLNLA-G 209

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N I   G +A     +L +LDL        G   L G   L SLN++  N I D   + L
Sbjct: 210 NMIGPAGARALRRNTSLTELDLSTNRLGDAGAQALAGSRSLTSLNVR-SNEIGDDGTEAL 268

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           +  T LKSL +S + +   G   L G   L  L+L  C +      +L+   SL  L+L 
Sbjct: 269 ARNTTLKSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLG 328

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             ++ DDG    +   +L +L+L  N I D     L G  +L SLNL    + D+G   L
Sbjct: 329 SNRIGDDGARALATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAAL 388

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
                L  L L   ++G +G +HL+    L  ++LS   +       L+  + L +LN+ 
Sbjct: 389 AQHPRLTSLNLGRNRIGPNGAQHLAKSATLTELDLSENRLGPEGAEALSLSTVLTTLNVS 448

Query: 357 ARQITDTGLAALTSL-TGLTHLDLFGARITDSGA 389
              I + G  A     T LT LD    R+ ++GA
Sbjct: 449 DNAIGEAGARAFAEKSTSLTSLDARNNRMGEAGA 482



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 133/481 (27%), Positives = 200/481 (41%), Gaps = 62/481 (12%)

Query: 11  FNELVYSRCLTEVSLEAFR--DCALQDL----CLGQYPGVNDKWMDVIASQGSSLLSVDL 64
           +  L   R   E++LEA +     ++ L    C G+  GV++  +  +A++   L S+ L
Sbjct: 33  YPALTSVRFKGELTLEALKALPPGVEHLDISRCTGR--GVSNAGLAHLATR--PLKSLSL 88

Query: 65  SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
           +G ++   G   L  C++L SL    C  I D     L    ++ SL    N  I   G 
Sbjct: 89  NGIEIDAEGARLLATCASLTSLSLTGC-SIGDRAATALAQSRSIASLDLSVN-MIGPDGA 146

Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           +A A    LV L+L        G + L     L+SLN    N I D+ +   +  T L  
Sbjct: 147 RALAS-APLVSLNLHNNGIGDEGALALATSGTLKSLNAS-NNGIGDAGVLGFADNTVLTQ 204

Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
           L ++ + +  +G   L+    LT L+L    +  A   +L+   SL  LN+   ++ DDG
Sbjct: 205 LNLAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQALAGSRSLTSLNVRSNEIGDDG 264

Query: 245 CEKFSKIGSLKVLNLGFNEIT-------------DE-----CLVHLKGL------TNLES 280
            E  ++  +LK LNL +N I               E     C +   G       T+L S
Sbjct: 265 TEALARNTTLKSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLAS 324

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           L+L S  IGD+                        G R L+    L  ++LS   I D  
Sbjct: 325 LHLGSNRIGDD------------------------GARALATSRTLTLLDLSRNNIHDAG 360

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
            + LAG  SL SLNL   ++ D G AAL     LT L+L   RI  +GA +L     L  
Sbjct: 361 AQALAGNGSLTSLNLYGNEVDDDGAAALAQHPRLTSLNLGRNRIGPNGAQHLAKSATLTE 420

Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
           L++    L   G + +   + LT LN+S N              T L SL+  N+R+  A
Sbjct: 421 LDLSENRLGPEGAEALSLSTVLTTLNVSDNAIGEAGARAFAEKSTSLTSLDARNNRMGEA 480

Query: 461 G 461
           G
Sbjct: 481 G 481


>gi|290981696|ref|XP_002673566.1| LRR_RI domain-containing protein [Naegleria gruberi]
 gi|284087150|gb|EFC40822.1| LRR_RI domain-containing protein [Naegleria gruberi]
          Length = 411

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 165/323 (51%), Gaps = 9/323 (2%)

Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
           LS + NN    +G   F   I  +K+D E  T +    + L+ + +L  L++++ N  TD
Sbjct: 74  LSLKCNNDDKLKGQ--FLQNIETLKVDRESLTIMFDCKI-LEFMKQLTDLDVQYNNLGTD 130

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG---CPVTAACLDSLSAL 227
            ++K +S L  L++L IS + +   G  Y+  L +LT LN+ G   C  T      +S++
Sbjct: 131 -EVKYISQLKQLRNLDISINNIDKEGAKYISQLSQLTKLNISGNCYCIGTEGA-KHISSM 188

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
             L YL++++ ++ D+G +  S++  L  L +  N I DE   H+ G+  L  L++    
Sbjct: 189 KQLTYLDISKNEIGDEGAKSISELKQLTSLYILTNNIGDEGAKHISGMNQLTELDISFNL 248

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           IG EG+ +++ +  L  L +++ ++G  G ++L  ++ L ++N+    I     ++++ L
Sbjct: 249 IGIEGVRHISSMKQLTSLSINNAKIGD-GAKYLGAMSQLTNLNIFSCNIESNGAKQISAL 307

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
             LK L +   Q+   G   ++ +  L  L + G  I + GA ++   K L +L IC   
Sbjct: 308 QQLKFLGIGYNQLGHEGAKNISEMKQLDSLYICGNDIGERGAKHISGMKRLTTLNICENN 367

Query: 408 LTDAGVKHIKDLSSLTLLNLSQN 430
           + D G K I    SLT+L++  N
Sbjct: 368 IGDNGAKFISQSKSLTILSIYSN 390



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 3/152 (1%)

Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
           L  +  L  +++ +  +    ++ ++ L  L++L++    I   G   ++ L+ LT L++
Sbjct: 111 LEFMKQLTDLDVQYNNLGTDEVKYISQLKQLRNLDISINNIDKEGAKYISQLSQLTKLNI 170

Query: 380 FG--ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
            G    I   GA ++ + K L  L+I    + D G K I +L  LT L +  N N+ D+ 
Sbjct: 171 SGNCYCIGTEGAKHISSMKQLTYLDISKNEIGDEGAKSISELKQLTSLYILTN-NIGDEG 229

Query: 438 LELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
            + ISG+  L  L++S + I   G+RH++  +
Sbjct: 230 AKHISGMNQLTELDISFNLIGIEGVRHISSMK 261



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 4/131 (3%)

Query: 343 KLAG--LSSLKSLNLDARQITDT-GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
           KL G  L ++++L +D   +T       L  +  LT LD+    +      Y+   K LR
Sbjct: 83  KLKGQFLQNIETLKVDRESLTIMFDCKILEFMKQLTDLDVQYNNLGTDEVKYISQLKQLR 142

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN-LTDKTLELISGLTGLVSLNVSNSRIT 458
           +L+I    +   G K+I  LS LT LN+S NC  +  +  + IS +  L  L++S + I 
Sbjct: 143 NLDISINNIDKEGAKYISQLSQLTKLNISGNCYCIGTEGAKHISSMKQLTYLDISKNEIG 202

Query: 459 SAGLRHLNHAR 469
             G + ++  +
Sbjct: 203 DEGAKSISELK 213


>gi|330506767|ref|YP_004383195.1| internalin-A [Methanosaeta concilii GP6]
 gi|328927575|gb|AEB67377.1| internalin-A, putative [Methanosaeta concilii GP6]
          Length = 567

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 147/448 (32%), Positives = 220/448 (49%), Gaps = 72/448 (16%)

Query: 14  LVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSG 73
           +++ +C  E S+ AF D  L+ +       ++    D+ AS        DL G  + ++ 
Sbjct: 18  ILFGQCQMEQSVIAFPDPNLEMVI---REAIDKPEGDIYAS--------DLYGIKLLNAD 66

Query: 74  LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
           +  +KD + L+      CI              NL +LS R N    A  +    GL  L
Sbjct: 67  MSSIKDITGLER-----CI--------------NLENLSLRENEISDASSLSGLTGLKRL 107

Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
            +L   + T      V+L GL  LE+L++ W N IT+     LSGLTNL +L +  +K+ 
Sbjct: 108 -ELSSNQITD-----VSLSGLANLETLSL-WDNHITN---VSLSGLTNLDTLLLWGNKII 157

Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
           +  ++ L GL  LT L+L    +T A    LS L +L  L+L+  Q++D      S + +
Sbjct: 158 N--VSSLSGLTNLTDLDLSTNQITDAS--PLSGLTNLTDLDLDNNQITD--VSSLSGLIN 211

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
           L  L+L  N IT+   V L GLTN+  L+L    I D   V L+GL NL  L++S  Q+ 
Sbjct: 212 LMNLDLSSNRITN---VSLSGLTNVVWLDLWGNQITD---VTLSGLTNLTWLDVSRNQIA 265

Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
              +  LSGLTNL  + L    I+D S   L+GL++L  L+L   QITD   + L+ LT 
Sbjct: 266 --DVSSLSGLTNLTKLYLGCNQITDVS--SLSGLTNLTDLDLSTNQITDA--SPLSGLTN 319

Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
           LT+LDL   RI D     L +  NL  LE+            I D+SSL+ L   ++ +L
Sbjct: 320 LTYLDLDNNRIND---VSLSDLTNLTDLELSN--------NQINDVSSLSGLTNLKDLDL 368

Query: 434 TDKTLELI---SGLTGLVSLNVSNSRIT 458
           ++  +  I   SGLT L  L +S++ IT
Sbjct: 369 SNNQINDISSLSGLTNLTDLELSSNEIT 396



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 138/425 (32%), Positives = 209/425 (49%), Gaps = 75/425 (17%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDF--NFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
           ++LS + +TD   + L   +NL++L    N    +S      L GL+NL +L    N  I
Sbjct: 107 LELSSNQITD---VSLSGLANLETLSLWDNHITNVS------LSGLTNLDTLLLWGNKII 157

Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
               + + +GL NL  LDL            L GL  L  L++   N ITD  +  LSGL
Sbjct: 158 ---NVSSLSGLTNLTDLDLSTNQITDAS--PLSGLTNLTDLDLD-NNQITD--VSSLSGL 209

Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
            NL +L +S +++T+     L GL  +  L+L G  +T     +LS L +L +L+++R Q
Sbjct: 210 INLMNLDLSSNRITN---VSLSGLTNVVWLDLWGNQITDV---TLSGLTNLTWLDVSRNQ 263

Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
           ++D      S + +L  L LG N+ITD  +  L GLTNL  L+L +  I D     L+GL
Sbjct: 264 IAD--VSSLSGLTNLTKLYLGCNQITD--VSSLSGLTNLTDLDLSTNQITDAS--PLSGL 317

Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
            NL  L+L + ++    L  L+ LT+LE   LS   I+D S   L+GL++LK L+L   Q
Sbjct: 318 TNLTYLDLDNNRINDVSLSDLTNLTDLE---LSNNQINDVS--SLSGLTNLKDLDLSNNQ 372

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDS--------------------GAAYLRNFKNLR 399
           I D  +++L+ LT LT L+L    IT+                       + L    +L+
Sbjct: 373 IND--ISSLSGLTNLTDLELSSNEITNISSLSSLASLRCLDLDNNQIIDVSSLSALTSLK 430

Query: 400 SLEICGGGLTDAGVKHIKDLSSLT------LLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
            L +C          H  D SSL+       L+LS N  +TD  +  +SGL  L  LN+S
Sbjct: 431 WLRLCS--------NHATDASSLSSLVNLRWLDLSSN-QITD--VSPLSGLYNLGWLNLS 479

Query: 454 NSRIT 458
           +++IT
Sbjct: 480 SNQIT 484



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 127/412 (30%), Positives = 185/412 (44%), Gaps = 108/412 (26%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           +NL  LD +   QI+D     L GL+NLT L    NN IT   + + +GLINL+ LDL  
Sbjct: 166 TNLTDLDLSTN-QITDAS--PLSGLTNLTDLDLD-NNQIT--DVSSLSGLINLMNLDLS- 218

Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITD-------------------SDMKPLSGLTN 181
             RI    V+L GL  +  L++ W N ITD                   +D+  LSGLTN
Sbjct: 219 SNRITN--VSLSGLTNVVWLDL-WGNQITDVTLSGLTNLTWLDVSRNQIADVSSLSGLTN 275

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
           L  L + C+++TD  ++ L GL  LT L+L    +T A    LS L +L YL+L+  +++
Sbjct: 276 LTKLYLGCNQITD--VSSLSGLTNLTDLDLSTNQITDAS--PLSGLTNLTYLDLDNNRIN 331

Query: 242 D-------------------DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
           D                   +     S + +LK L+L  N+I D  +  L GLTNL  L 
Sbjct: 332 DVSLSDLTNLTDLELSNNQINDVSSLSGLTNLKDLDLSNNQIND--ISSLSGLTNLTDLE 389

Query: 283 LDS------------------------------------------CGIGDEGLVNLTGLC 300
           L S                                          C        +L+ L 
Sbjct: 390 LSSNEITNISSLSSLASLRCLDLDNNQIIDVSSLSALTSLKWLRLCSNHATDASSLSSLV 449

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
           NL+ L+LS  Q+  + +  LSGL NL  +NLS   I+D S   L+GL++L  L+L + QI
Sbjct: 450 NLRWLDLSSNQI--TDVSPLSGLYNLGWLNLSSNQITDVS--PLSGLANLTGLDLSSNQI 505

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGG 406
           TD  ++ L++LT L  +DL   +I D+    +        +  +R L I  G
Sbjct: 506 TD--VSPLSNLTNLIWMDLRSKQIPDASTLRISQASNNYIYPTIRFLTIVKG 555



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 112/220 (50%), Gaps = 41/220 (18%)

Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
           S +  +K+LN   + I D  +  L+   NLE+L+L    I D    +L+GL  LK LELS
Sbjct: 55  SDLYGIKLLNADMSSIKD--ITGLERCINLENLSLRENEISDAS--SLSGLTGLKRLELS 110

Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
             Q+       LSGL NLE+++L    I++ SL   +GL++L +L L   +I +  +++L
Sbjct: 111 SNQITD---VSLSGLANLETLSLWDNHITNVSL---SGLTNLDTLLLWGNKIIN--VSSL 162

Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
           + LT LT LDL   +ITD  A+ L    NL  L++            I D+SSL      
Sbjct: 163 SGLTNLTDLDLSTNQITD--ASPLSGLTNLTDLDLDN--------NQITDVSSL------ 206

Query: 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHA 468
                        SGL  L++L++S++RIT+  L  L + 
Sbjct: 207 -------------SGLINLMNLDLSSNRITNVSLSGLTNV 233


>gi|290980071|ref|XP_002672756.1| predicted protein [Naegleria gruberi]
 gi|284086335|gb|EFC40012.1| predicted protein [Naegleria gruberi]
          Length = 385

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 154/304 (50%), Gaps = 1/304 (0%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N I D   K +SG+ +L SL I  +++   G   + G++ L  L++    +       +S
Sbjct: 28  NQIGDEGSKFISGMKHLTSLNIDRNQIGVEGAKLISGMKSLISLSIGDNQIGVEGAKLIS 87

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            +  L  L++NR Q+  +G +  S++  L  LN+ +N+I  E    + G+  L SL++  
Sbjct: 88  GMKHLTSLDINRNQIGVEGAKSISRMKQLTSLNIYYNQIGAEGAKSISGMKQLTSLDIGG 147

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
             IG E    ++ +  L  L++ + Q+G  G + +SG+  L S+N+ F  I     + ++
Sbjct: 148 NQIGVEESKYISEMKQLTSLDIYNNQIGVEGAKSISGMKQLTSLNIGFNRIGVEGSKLIS 207

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
            +  L SLN+ + +I   G   +  +  LT L+++   I D G+ Y+   K L SL+I  
Sbjct: 208 EMKQLTSLNIGSNEIGVEGSKFIPEMKHLTSLNIYYNEIGDEGSKYISEMKQLTSLDIYY 267

Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
             +   G K+I ++  LT L +S N  +  +  + IS +  L SL++++++I   G + +
Sbjct: 268 NEIGVEGAKYISEMKQLTSLGISDN-QIGVEGAKFISEMKLLTSLDIADNQIGDEGSKFI 326

Query: 466 NHAR 469
           +  +
Sbjct: 327 SEMK 330



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 173/355 (48%), Gaps = 5/355 (1%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
           + +  +L SLD     QI D G + + G+ +LTSL+  RN  I  +G K  +G+ +L+ L
Sbjct: 14  ISEMKHLTSLDIADN-QIGDEGSKFISGMKHLTSLNIDRNQ-IGVEGAKLISGMKSLISL 71

Query: 137 DL-ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
            + +    + G  + + G+  L SL+I   N I     K +S +  L SL I  +++   
Sbjct: 72  SIGDNQIGVEGAKL-ISGMKHLTSLDINR-NQIGVEGAKSISRMKQLTSLNIYYNQIGAE 129

Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
           G   + G+++LT L++ G  +       +S +  L  L++   Q+  +G +  S +  L 
Sbjct: 130 GAKSISGMKQLTSLDIGGNQIGVEESKYISEMKQLTSLDIYNNQIGVEGAKSISGMKQLT 189

Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
            LN+GFN I  E    +  +  L SLN+ S  IG EG   +  + +L  L +   ++G  
Sbjct: 190 SLNIGFNRIGVEGSKLISEMKQLTSLNIGSNEIGVEGSKFIPEMKHLTSLNIYYNEIGDE 249

Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
           G +++S +  L S+++ +  I     + ++ +  L SL +   QI   G   ++ +  LT
Sbjct: 250 GSKYISEMKQLTSLDIYYNEIGVEGAKYISEMKQLTSLGISDNQIGVEGAKFISEMKLLT 309

Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
            LD+   +I D G+ ++   K+L SL +    + D G K I  +  LT L +  N
Sbjct: 310 SLDIADNQIGDEGSKFISEMKSLTSLNVNSNQIGDEGAKLISGMKQLTSLKIYYN 364



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 173/358 (48%), Gaps = 27/358 (7%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+   L S+D++ + + D G   +    +L SL+ +   QI   G + + G+ +L SLS 
Sbjct: 15  SEMKHLTSLDIADNQIGDEGSKFISGMKHLTSLNIDRN-QIGVEGAKLISGMKSLISLSI 73

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
             +N I  +G K  +G+ +L  LD+ R      G  ++  + +L SLNI + N I     
Sbjct: 74  G-DNQIGVEGAKLISGMKHLTSLDINRNQIGVEGAKSISRMKQLTSLNI-YYNQIGAEGA 131

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           K +SG+  L SL I  +++      Y+  +++LT L++    +      S+S +  L  L
Sbjct: 132 KSISGMKQLTSLDIGGNQIGVEESKYISEMKQLTSLDIYNNQIGVEGAKSISGMKQLTSL 191

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLG------------------------FNEITDECL 269
           N+   ++  +G +  S++  L  LN+G                        +NEI DE  
Sbjct: 192 NIGFNRIGVEGSKLISEMKQLTSLNIGSNEIGVEGSKFIPEMKHLTSLNIYYNEIGDEGS 251

Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
            ++  +  L SL++    IG EG   ++ +  L  L +SD Q+G  G + +S +  L S+
Sbjct: 252 KYISEMKQLTSLDIYYNEIGVEGAKYISEMKQLTSLGISDNQIGVEGAKFISEMKLLTSL 311

Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
           +++   I D   + ++ + SL SLN+++ QI D G   ++ +  LT L ++  +I ++
Sbjct: 312 DIADNQIGDEGSKFISEMKSLTSLNVNSNQIGDEGAKLISGMKQLTSLKIYYNQIGET 369



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 157/325 (48%), Gaps = 17/325 (5%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           SL+S+ +  + +   G   +    +L SLD N   QI   G + +  +  LTSL+   N 
Sbjct: 67  SLISLSIGDNQIGVEGAKLISGMKHLTSLDINRN-QIGVEGAKSISRMKQLTSLNIYYNQ 125

Query: 118 AITAQGMKAFAGLINLVKLDL-------ERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
            I A+G K+ +G+  L  LD+       E    I         + +L SL+I + N I  
Sbjct: 126 -IGAEGAKSISGMKQLTSLDIGGNQIGVEESKYISE-------MKQLTSLDI-YNNQIGV 176

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
              K +SG+  L SL I  +++   G   +  +++LT LN+    +       +  +  L
Sbjct: 177 EGAKSISGMKQLTSLNIGFNRIGVEGSKLISEMKQLTSLNIGSNEIGVEGSKFIPEMKHL 236

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
             LN+   ++ D+G +  S++  L  L++ +NEI  E   ++  +  L SL +    IG 
Sbjct: 237 TSLNIYYNEIGDEGSKYISEMKQLTSLDIYYNEIGVEGAKYISEMKQLTSLGISDNQIGV 296

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
           EG   ++ +  L  L+++D Q+G  G + +S + +L S+N++   I D   + ++G+  L
Sbjct: 297 EGAKFISEMKLLTSLDIADNQIGDEGSKFISEMKSLTSLNVNSNQIGDEGAKLISGMKQL 356

Query: 351 KSLNLDARQITDTGLAALTSLTGLT 375
            SL +   QI +T L ++ S+T  T
Sbjct: 357 TSLKIYYNQIGETLLMSVISITAET 381


>gi|290996041|ref|XP_002680591.1| predicted protein [Naegleria gruberi]
 gi|284094212|gb|EFC47847.1| predicted protein [Naegleria gruberi]
          Length = 281

 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 125/250 (50%)

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           +  LS L  LK L I  S + D G+ ++  L++LT L++    ++      LS L  L +
Sbjct: 17  LNHLSELKQLKKLHIYDSYIGDEGVRFISELKQLTTLDIRNNGISEYGAKYLSELKQLTF 76

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           L +++  +   G +  S++  L +L +  N I DE   +L  L  L  LN+    IGDEG
Sbjct: 77  LIIDKNNIGAKGSKYISELKQLTILIIDKNNIDDEGAKYLSELKQLTYLNIQDNRIGDEG 136

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
              +  L  L  L +++ Q+G+ G ++LS L +L  +N+S   I D   + L  L  L  
Sbjct: 137 SKYIGELKQLTDLYINNNQIGNEGAKYLSELKHLILLNISNNQIGDEGAKYLCELKQLMD 196

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
           L++    I D G+  L+ L  LTHLD+   +I D G  Y+   K +  L I    + D G
Sbjct: 197 LDISCNDIGDEGIKYLSGLKQLTHLDISYNKIRDEGVKYISELKEIMYLYINNNYIGDEG 256

Query: 413 VKHIKDLSSL 422
            K++ +++ L
Sbjct: 257 TKYLSEMNQL 266



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 133/259 (51%), Gaps = 3/259 (1%)

Query: 143 RIHGG--LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
           RI  G  L +L  L +L+ L+I + + I D  ++ +S L  L +L I  + +++ G  YL
Sbjct: 10  RIKEGEALNHLSELKQLKKLHI-YDSYIGDEGVRFISELKQLTTLDIRNNGISEYGAKYL 68

Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
             L++LT L ++   + A     +S L  L  L +++  + D+G +  S++  L  LN+ 
Sbjct: 69  SELKQLTFLIIDKNNIGAKGSKYISELKQLTILIIDKNNIDDEGAKYLSELKQLTYLNIQ 128

Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
            N I DE   ++  L  L  L +++  IG+EG   L+ L +L  L +S+ Q+G  G ++L
Sbjct: 129 DNRIGDEGSKYIGELKQLTDLYINNNQIGNEGAKYLSELKHLILLNISNNQIGDEGAKYL 188

Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
             L  L  +++S   I D  ++ L+GL  L  L++   +I D G+  ++ L  + +L + 
Sbjct: 189 CELKQLMDLDISCNDIGDEGIKYLSGLKQLTHLDISYNKIRDEGVKYISELKEIMYLYIN 248

Query: 381 GARITDSGAAYLRNFKNLR 399
              I D G  YL     L+
Sbjct: 249 NNYIGDEGTKYLSEMNQLK 267



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 127/266 (47%), Gaps = 6/266 (2%)

Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
           +K L KL +   EG       L+ LS L  L  L++    + D+G    S++  L  L++
Sbjct: 1   MKSLTKLKIRIKEG-----EALNHLSELKQLKKLHIYDSYIGDEGVRFISELKQLTTLDI 55

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
             N I++    +L  L  L  L +D   IG +G   ++ L  L  L +    +   G ++
Sbjct: 56  RNNGISEYGAKYLSELKQLTFLIIDKNNIGAKGSKYISELKQLTILIIDKNNIDDEGAKY 115

Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
           LS L  L  +N+    I D   + +  L  L  L ++  QI + G   L+ L  L  L++
Sbjct: 116 LSELKQLTYLNIQDNRIGDEGSKYIGELKQLTDLYINNNQIGNEGAKYLSELKHLILLNI 175

Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
              +I D GA YL   K L  L+I    + D G+K++  L  LT L++S N  + D+ ++
Sbjct: 176 SNNQIGDEGAKYLCELKQLMDLDISCNDIGDEGIKYLSGLKQLTHLDISYN-KIRDEGVK 234

Query: 440 LISGLTGLVSLNVSNSRITSAGLRHL 465
            IS L  ++ L ++N+ I   G ++L
Sbjct: 235 YISELKEIMYLYINNNYIGDEGTKYL 260



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 124/267 (46%), Gaps = 3/267 (1%)

Query: 72  SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
             L HL +   L+ L   +   I D G+  +  L  LT+L  R NN I+  G K  + L 
Sbjct: 15  EALNHLSELKQLKKLHI-YDSYIGDEGVRFISELKQLTTLDIR-NNGISEYGAKYLSELK 72

Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
            L  L +++      G   +  L +L  L I   N I D   K LS L  L  L I  ++
Sbjct: 73  QLTFLIIDKNNIGAKGSKYISELKQLTILIID-KNNIDDEGAKYLSELKQLTYLNIQDNR 131

Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
           + D G  Y+  L++LT L +    +       LS L  L  LN++  Q+ D+G +   ++
Sbjct: 132 IGDEGSKYIGELKQLTDLYINNNQIGNEGAKYLSELKHLILLNISNNQIGDEGAKYLCEL 191

Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
             L  L++  N+I DE + +L GL  L  L++    I DEG+  ++ L  +  L +++  
Sbjct: 192 KQLMDLDISCNDIGDEGIKYLSGLKQLTHLDISYNKIRDEGVKYISELKEIMYLYINNNY 251

Query: 312 VGSSGLRHLSGLTNLESINLSFTGISD 338
           +G  G ++LS +  L+  N  F    D
Sbjct: 252 IGDEGTKYLSEMNQLKDHNKDFQYKED 278



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 81/174 (46%), Gaps = 2/174 (1%)

Query: 94  ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
           I D G ++L  L  LT L+ + +N I  +G K    L  L  L +      + G   L  
Sbjct: 108 IDDEGAKYLSELKQLTYLNIQ-DNRIGDEGSKYIGELKQLTDLYINNNQIGNEGAKYLSE 166

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
           L  L  LNI   N I D   K L  L  L  L ISC+ + D GI YL GL++LT L++  
Sbjct: 167 LKHLILLNIS-NNQIGDEGAKYLCELKQLMDLDISCNDIGDEGIKYLSGLKQLTHLDISY 225

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
             +    +  +S L  + YL +N   + D+G +  S++  LK  N  F    DE
Sbjct: 226 NKIRDEGVKYISELKEIMYLYINNNYIGDEGTKYLSEMNQLKDHNKDFQYKEDE 279


>gi|149175664|ref|ZP_01854283.1| hypothetical protein PM8797T_31103 [Planctomyces maris DSM 8797]
 gi|148845383|gb|EDL59727.1| hypothetical protein PM8797T_31103 [Planctomyces maris DSM 8797]
          Length = 660

 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 113/405 (27%), Positives = 196/405 (48%), Gaps = 30/405 (7%)

Query: 92  IQISDGGLEHLRGLSNLTSLSFRRNNAI-TAQGMKAFA-----GLIN------------- 132
           +++++     LRGL  L SL+    N    A+G+  F       LIN             
Sbjct: 226 VRLAEIDFTQLRGLDGLRSLTLEGVNLYGRAEGLGFFPRLEALTLINTNISDQDRGRITT 285

Query: 133 LVKLDLERCTRIHGG--LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC- 189
             +L   R   +H G  L +L    KLE L ++ C  + + D+  L  LT L+ L +S  
Sbjct: 286 FTQLKTLRLENVHLGRHLNDLSTFRKLEKLALRNCG-LDEDDVATLGSLTQLRELDLSGN 344

Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGC--PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
           S + D  + +L+ L +L  L +      +T   L  L     L  L+L  C L  DG   
Sbjct: 345 SSLNDVALFHLRNLNQLEELKVASYYNRITEKGLQYLRQPRKLKTLDLIGCMLKADGLAA 404

Query: 248 FSKIGSLKVLNLGF---NEITDECLVHLKGLTNLESLNLDSCGI-GDEGLVNLTGLCNLK 303
              + SL+ LNL       +       L+ L +L  L L+   + G EGL +L+ L  L+
Sbjct: 405 IGDVSSLETLNLKVYCPERVDAHFFDPLRHLKSLRELTLECRQLKGGEGLSSLSQLPELE 464

Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
            L L  T++    +R ++   +L+++ L+   ++D  +  L  L  L+SLNLD  ++  +
Sbjct: 465 ALHLLQTKLQDEDIRWIANCNSLKALTLNSYEVTDQGVSSLGSLKQLESLNLDRCRLDGS 524

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
           GL +L  L  LT + L    +TD+   +L +   L+ L +  G ++ A ++ +KDL  L+
Sbjct: 525 GLVSLQQLHRLTDVSLNHTGVTDAVIPFLSSLSQLKRLTLENGRVSSATLESLKDLKKLS 584

Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHA 468
            LNL+ NC ++D+  EL++ ++ L +LN++ +++++ GL  L  A
Sbjct: 585 ELNLT-NCPVSDEICELLTQMSALRTLNLNKTKVSNIGLEGLQKA 628



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 150/340 (44%), Gaps = 50/340 (14%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF-RRNNAITAQGMKAFAGLINLVKLDLE 139
           + L+ LD +    ++D  L HLR L+ L  L      N IT +G++       L  LDL 
Sbjct: 334 TQLRELDLSGNSSLNDVALFHLRNLNQLEELKVASYYNRITEKGLQYLRQPRKLKTLDLI 393

Query: 140 RCTRIHGGLVNLKGLMKLESLNIK-WCNCITDSDM-KPLSGLTNLKSLQISCSKVTDSGI 197
            C     GL  +  +  LE+LN+K +C    D+    PL  L +L+ L + C +      
Sbjct: 394 GCMLKADGLAAIGDVSSLETLNLKVYCPERVDAHFFDPLRHLKSLRELTLECRQ------ 447

Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
             LKG                  L SLS L  L  L+L + +L D+     +   SLK L
Sbjct: 448 --LKG---------------GEGLSSLSQLPELEALHLLQTKLQDEDIRWIANCNSLKAL 490

Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN---------------------- 295
            L   E+TD+ +  L  L  LESLNLD C +   GLV+                      
Sbjct: 491 TLNSYEVTDQGVSSLGSLKQLESLNLDRCRLDGSGLVSLQQLHRLTDVSLNHTGVTDAVI 550

Query: 296 --LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
             L+ L  LK L L + +V S+ L  L  L  L  +NL+   +SD     L  +S+L++L
Sbjct: 551 PFLSSLSQLKRLTLENGRVSSATLESLKDLKKLSELNLTNCPVSDEICELLTQMSALRTL 610

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
           NL+  ++++ GL  L   TGL  L L   ++T  G   LR
Sbjct: 611 NLNKTKVSNIGLEGLQKATGLETLSLRRTKVTRQGVQQLR 650


>gi|283778672|ref|YP_003369427.1| hypothetical protein Psta_0882 [Pirellula staleyi DSM 6068]
 gi|283437125|gb|ADB15567.1| hypothetical protein Psta_0882 [Pirellula staleyi DSM 6068]
          Length = 450

 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 120/238 (50%), Gaps = 4/238 (1%)

Query: 161 NIKWCNC----ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
           NI+W +     +TD+ +  L+ +  +K L +  +K++  G+A L  L  L  L+L+  P+
Sbjct: 204 NIQWLSLEGSDVTDAVLPKLAKIPEIKRLFLGSTKLSGGGLATLAPLVDLEYLSLKQLPI 263

Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
               L  L     L  L L+  +++D G  K  K   L  L L    +TDE ++ +  ++
Sbjct: 264 DDRDLQELPEFPKLMSLGLDFTEVTDAGLTKLPKFAMLDTLWLDATRVTDEGMLEVAKIS 323

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
            L SL + +  +   G  +L  L +L+ L L   Q+    L+HL GL N+E + L  T +
Sbjct: 324 TLRSLFMPATQVKGPGFSHLMKLASLRYLSLKGVQLDDVALQHLVGLENIEILGLDHTNV 383

Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
           +D  + +L G++ LK+L L    +TD  + +L+ +  L  + L G+ ++  GA  LR 
Sbjct: 384 TDKQIEQLVGMTRLKTLWLSKTAVTDGAIESLSKIRSLQTVYLHGSEVSADGAERLRR 441



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 119/228 (52%), Gaps = 1/228 (0%)

Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
           D+G +   ++G+++ L+L  +++TD  L  L  +  ++ L L S  +   GL  L  L +
Sbjct: 193 DEGVDHVVQLGNIQWLSLEGSDVTDAVLPKLAKIPEIKRLFLGSTKLSGGGLATLAPLVD 252

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
           L+ L L    +    L+ L     L S+ L FT ++D  L KL   + L +L LDA ++T
Sbjct: 253 LEYLSLKQLPIDDRDLQELPEFPKLMSLGLDFTEVTDAGLTKLPKFAMLDTLWLDATRVT 312

Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
           D G+  +  ++ L  L +   ++   G ++L    +LR L + G  L D  ++H+  L +
Sbjct: 313 DEGMLEVAKISTLRSLFMPATQVKGPGFSHLMKLASLRYLSLKGVQLDDVALQHLVGLEN 372

Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           + +L L  + N+TDK +E + G+T L +L +S + +T   +  L+  R
Sbjct: 373 IEILGLD-HTNVTDKQIEQLVGMTRLKTLWLSKTAVTDGAIESLSKIR 419



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 119/239 (49%)

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           L N++ L +  S VTD+ +  L  + ++  L L    ++   L +L+ L  L YL+L + 
Sbjct: 202 LGNIQWLSLEGSDVTDAVLPKLAKIPEIKRLFLGSTKLSGGGLATLAPLVDLEYLSLKQL 261

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
            + D   ++  +   L  L L F E+TD  L  L     L++L LD+  + DEG++ +  
Sbjct: 262 PIDDRDLQELPEFPKLMSLGLDFTEVTDAGLTKLPKFAMLDTLWLDATRVTDEGMLEVAK 321

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
           +  L+ L +  TQV   G  HL  L +L  ++L    + D +L+ L GL +++ L LD  
Sbjct: 322 ISTLRSLFMPATQVKGPGFSHLMKLASLRYLSLKGVQLDDVALQHLVGLENIEILGLDHT 381

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
            +TD  +  L  +T L  L L    +TD     L   ++L+++ + G  ++  G + ++
Sbjct: 382 NVTDKQIEQLVGMTRLKTLWLSKTAVTDGAIESLSKIRSLQTVYLHGSEVSADGAERLR 440



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 123/246 (50%), Gaps = 1/246 (0%)

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
           +D +  LG++ +L+L    ++D    K +KI  +K L LG  +++   L  L  L +LE 
Sbjct: 196 VDHVVQLGNIQWLSLEGSDVTDAVLPKLAKIPEIKRLFLGSTKLSGGGLATLAPLVDLEY 255

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           L+L    I D  L  L     L  L L  T+V  +GL  L     L+++ L  T ++D  
Sbjct: 256 LSLKQLPIDDRDLQELPEFPKLMSLGLDFTEVTDAGLTKLPKFAMLDTLWLDATRVTDEG 315

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
           + ++A +S+L+SL + A Q+   G + L  L  L +L L G ++ D    +L   +N+  
Sbjct: 316 MLEVAKISTLRSLFMPATQVKGPGFSHLMKLASLRYLSLKGVQLDDVALQHLVGLENIEI 375

Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
           L +    +TD  ++ +  ++ L  L LS+   +TD  +E +S +  L ++ +  S +++ 
Sbjct: 376 LGLDHTNVTDKQIEQLVGMTRLKTLWLSKTA-VTDGAIESLSKIRSLQTVYLHGSEVSAD 434

Query: 461 GLRHLN 466
           G   L 
Sbjct: 435 GAERLR 440



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 5/183 (2%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           + D  L  L +   L SL  +F  +++D GL  L   + L +L       +T +GM   A
Sbjct: 263 IDDRDLQELPEFPKLMSLGLDFT-EVTDAGLTKLPKFAMLDTLWLDATR-VTDEGMLEVA 320

Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
            +  L  L +   T++ G G  +L  L  L  L++K    + D  ++ L GL N++ L +
Sbjct: 321 KISTLRSLFMP-ATQVKGPGFSHLMKLASLRYLSLKGVQ-LDDVALQHLVGLENIEILGL 378

Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
             + VTD  I  L G+ +L  L L    VT   ++SLS + SL  + L+  ++S DG E+
Sbjct: 379 DHTNVTDKQIEQLVGMTRLKTLWLSKTAVTDGAIESLSKIRSLQTVYLHGSEVSADGAER 438

Query: 248 FSK 250
             +
Sbjct: 439 LRR 441



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 93/186 (50%), Gaps = 5/186 (2%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
           L+ L L Q P ++D+ +  +  +   L+S+ L  ++VTD+GL  L   + L +L  +   
Sbjct: 253 LEYLSLKQLP-IDDRDLQEL-PEFPKLMSLGLDFTEVTDAGLTKLPKFAMLDTLWLD-AT 309

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           +++D G+  +  +S L SL F     +   G      L +L  L L+        L +L 
Sbjct: 310 RVTDEGMLEVAKISTLRSL-FMPATQVKGPGFSHLMKLASLRYLSLKGVQLDDVALQHLV 368

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
           GL  +E L +   N +TD  ++ L G+T LK+L +S + VTD  I  L  ++ L  + L 
Sbjct: 369 GLENIEILGLDHTN-VTDKQIEQLVGMTRLKTLWLSKTAVTDGAIESLSKIRSLQTVYLH 427

Query: 213 GCPVTA 218
           G  V+A
Sbjct: 428 GSEVSA 433


>gi|290980851|ref|XP_002673145.1| predicted protein [Naegleria gruberi]
 gi|284086726|gb|EFC40401.1| predicted protein [Naegleria gruberi]
          Length = 468

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 155/336 (46%), Gaps = 3/336 (0%)

Query: 98  GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
           G +H+  +  LT+L    NN I  +G K    L NL  L++        G   +  L +L
Sbjct: 128 GAKHVSEMKQLTNLYVNANN-IGTEGAKFLRELKNLTYLNISENDIGVEGAKYISELKQL 186

Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
             L+I + N  T+   K +S L  L +L I  + +   G  Y+  L +L +LN+    + 
Sbjct: 187 TDLDISYNNIGTEG-AKYISDLKQLTTLDIESNNIGTEGAKYISELNQLQVLNISYSSLG 245

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
                 +S +  L +L ++   +  +G +  S++  L  L +  N+I DE   H+  +  
Sbjct: 246 DKGAQYISEMKQLTHLYISDSLIRSEGAKYISEMKQLTNLFIENNDIDDEGAKHISTMKE 305

Query: 278 LESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
           L  L +     I DEG   L+ L NL  L + D ++G+ G +HLS L NL SI +S+T I
Sbjct: 306 LTKLYMQGNRLISDEGAKYLSELKNLTVLFIGDNRIGNEGAKHLSELKNLTSIYVSYTEI 365

Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
            D   + L+ L+ L  L +    I   G   +++L  LT L +    I + GA Y+   K
Sbjct: 366 GDEGAKYLSELNKLTILQIGYNGIGAEGAKHISNLKELTMLKIQYNNIGNEGAKYISELK 425

Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
            L  L+I    +   G  ++  +  LT L +  N +
Sbjct: 426 QLTDLDISYNNIGTEGADYLSQMKQLTHLEIETNSD 461



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 158/332 (47%), Gaps = 12/332 (3%)

Query: 53  ASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE---HLRGLSNLT 109
            S+   L ++ ++ +++   G   L++  NL  L+    I  +D G+E   ++  L  LT
Sbjct: 132 VSEMKQLTNLYVNANNIGTEGAKFLRELKNLTYLN----ISENDIGVEGAKYISELKQLT 187

Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 169
            L    NN I  +G K  + L  L  LD+E       G   +  L +L+ LNI +   + 
Sbjct: 188 DLDISYNN-IGTEGAKYISDLKQLTTLDIESNNIGTEGAKYISELNQLQVLNISYS-SLG 245

Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
           D   + +S +  L  L IS S +   G  Y+  +++LT L +E   +       +S +  
Sbjct: 246 DKGAQYISEMKQLTHLYISDSLIRSEGAKYISEMKQLTNLFIENNDIDDEGAKHISTMKE 305

Query: 230 L--FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
           L   Y+  NR  +SD+G +  S++ +L VL +G N I +E   HL  L NL S+ +    
Sbjct: 306 LTKLYMQGNRL-ISDEGAKYLSELKNLTVLFIGDNRIGNEGAKHLSELKNLTSIYVSYTE 364

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           IGDEG   L+ L  L  L++    +G+ G +H+S L  L  + + +  I +   + ++ L
Sbjct: 365 IGDEGAKYLSELNKLTILQIGYNGIGAEGAKHISNLKELTMLKIQYNNIGNEGAKYISEL 424

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
             L  L++    I   G   L+ +  LTHL++
Sbjct: 425 KQLTDLDISYNNIGTEGADYLSQMKQLTHLEI 456



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 113/227 (49%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           +G +  S++  L  L +  N I  E    L+ L NL  LN+    IG EG   ++ L  L
Sbjct: 127 EGAKHVSEMKQLTNLYVNANNIGTEGAKFLRELKNLTYLNISENDIGVEGAKYISELKQL 186

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L++S   +G+ G +++S L  L ++++    I     + ++ L+ L+ LN+    + D
Sbjct: 187 TDLDISYNNIGTEGAKYISDLKQLTTLDIESNNIGTEGAKYISELNQLQVLNISYSSLGD 246

Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
            G   ++ +  LTHL +  + I   GA Y+   K L +L I    + D G KHI  +  L
Sbjct: 247 KGAQYISEMKQLTHLYISDSLIRSEGAKYISEMKQLTNLFIENNDIDDEGAKHISTMKEL 306

Query: 423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           T L +  N  ++D+  + +S L  L  L + ++RI + G +HL+  +
Sbjct: 307 TKLYMQGNRLISDEGAKYLSELKNLTVLFIGDNRIGNEGAKHLSELK 353



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 80/158 (50%), Gaps = 1/158 (0%)

Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
           +G  G +H+S +  L ++ ++   I     + L  L +L  LN+    I   G   ++ L
Sbjct: 124 IGVEGAKHVSEMKQLTNLYVNANNIGTEGAKFLRELKNLTYLNISENDIGVEGAKYISEL 183

Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
             LT LD+    I   GA Y+ + K L +L+I    +   G K+I +L+ L +LN+S   
Sbjct: 184 KQLTDLDISYNNIGTEGAKYISDLKQLTTLDIESNNIGTEGAKYISELNQLQVLNISY-S 242

Query: 432 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           +L DK  + IS +  L  L +S+S I S G ++++  +
Sbjct: 243 SLGDKGAQYISEMKQLTHLYISDSLIRSEGAKYISEMK 280



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 119/252 (47%), Gaps = 17/252 (6%)

Query: 52  IASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
           I ++G+  +S       +++S S + D G  ++ +   L  L  +  + I   G +++  
Sbjct: 220 IGTEGAKYISELNQLQVLNISYSSLGDKGAQYISEMKQLTHLYISDSL-IRSEGAKYISE 278

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNI 162
           +  LT+L F  NN I  +G K  + +  L KL ++  R     G     K L +L++L +
Sbjct: 279 MKQLTNL-FIENNDIDDEGAKHISTMKELTKLYMQGNRLISDEGA----KYLSELKNLTV 333

Query: 163 KWC--NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
            +   N I +   K LS L NL S+ +S +++ D G  YL  L KLT+L +    + A  
Sbjct: 334 LFIGDNRIGNEGAKHLSELKNLTSIYVSYTEIGDEGAKYLSELNKLTILQIGYNGIGAEG 393

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
              +S L  L  L +    + ++G +  S++  L  L++ +N I  E   +L  +  L  
Sbjct: 394 AKHISNLKELTMLKIQYNNIGNEGAKYISELKQLTDLDISYNNIGTEGADYLSQMKQLTH 453

Query: 281 LNLDSCGIGDEG 292
           L +++    +EG
Sbjct: 454 LEIETNSDAEEG 465


>gi|326513166|dbj|BAK06823.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 627

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 120/443 (27%), Positives = 203/443 (45%), Gaps = 50/443 (11%)

Query: 25  LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNL 83
           LE FR  ++Q++ L     V+ +W+  + S    L  + L+    V  S +  L   S L
Sbjct: 90  LEVFRH-SVQEIDLSGDIAVDAEWLAYLGS-FRYLGVLKLADCKKVDHSAIWPLSGMSML 147

Query: 84  QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
           + LD + C +I+D G++H+  + +L  L       +T  G+   + L  L+ LDL     
Sbjct: 148 KELDLSRCSKITDAGIKHIVSIDSLEKLHLS-ETGLTDNGVMLISALKGLILLDLGGIHM 206

Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
               L +L+ L +LE L++ W + ITD     L   T L+ L +S + VT      L  L
Sbjct: 207 TDKALRSLQVLTQLEHLDV-WGSEITDEGASILEAFTGLRFLNVSWTHVTR-----LPHL 260

Query: 204 QKLTLLNLEGCPVTAAC---------LDSLSALGSLF----------------YLNLNRC 238
             +  LN+  C + + C         L   +A  + F                +L+++ C
Sbjct: 261 PNMKYLNMSNCTIYSICGGDSEVHIPLQKFTASAASFGDIDEVFSSIVASSFSFLDMSGC 320

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL-TNLESLNLDSCGIGDEGLVNLT 297
            LS+       K+ SL+ L++  N +TD+ + ++  +   L  L+L + GI  + L  L 
Sbjct: 321 SLSN--LYGLQKMKSLEHLDISLNRVTDDAVEYVANIGMKLRYLSLKNTGITSQALCILA 378

Query: 298 G-LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-----------GSLRKLA 345
           G + NL  L L+ T++  S L ++S + +L  I+LS T I              SL  L 
Sbjct: 379 GTVPNLASLSLAYTKIDDSALVYISMMPSLRVIDLSHTTIKGFTRVEANSEKIPSLPLLE 438

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
            L  L+SLNL+   ++D  +  +TS   L +L L    ++D G   L +  NL  L  CG
Sbjct: 439 HLIYLESLNLEDAPLSDEVIPPMTSFRALKYLYLKSDFLSDPGLHALSSASNLIHLGFCG 498

Query: 406 GGLTDAGVKHIKDLSSLTLLNLS 428
             L+++G+      + L +L+LS
Sbjct: 499 SVLSNSGLLEFVPPAQLHVLDLS 521



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 165/367 (44%), Gaps = 38/367 (10%)

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           A+ A+ +        L  L L  C ++ H  +  L G+  L+ L++  C+ ITD+ +K +
Sbjct: 107 AVDAEWLAYLGSFRYLGVLKLADCKKVDHSAIWPLSGMSMLKELDLSRCSKITDAGIKHI 166

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
             + +L+ L +S + +TD+G+  +  L+ L LL+L G  +T   L SL  L  L +L++ 
Sbjct: 167 VSIDSLEKLHLSETGLTDNGVMLISALKGLILLDLGGIHMTDKALRSLQVLTQLEHLDVW 226

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI-----GD- 290
             +++D+G         L+ LN+ +  +T      L  L N++ LN+ +C I     GD 
Sbjct: 227 GSEITDEGASILEAFTGLRFLNVSWTHVT-----RLPHLPNMKYLNMSNCTIYSICGGDS 281

Query: 291 EGLVNLTGLCNLKCL-----ELSDTQVGS------------SGLRHLSGLTNLESINLSF 333
           E  + L              E+  + V S            S L  L  + +LE +++S 
Sbjct: 282 EVHIPLQKFTASAASFGDIDEVFSSIVASSFSFLDMSGCSLSNLYGLQKMKSLEHLDISL 341

Query: 334 TGISDGSLRKLAGLS-SLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAY 391
             ++D ++  +A +   L+ L+L    IT   L  L  ++  L  L L   +I DS   Y
Sbjct: 342 NRVTDDAVEYVANIGMKLRYLSLKNTGITSQALCILAGTVPNLASLSLAYTKIDDSALVY 401

Query: 392 LRNFKNLRSLE-----ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL--ELISGL 444
           +    +LR ++     I G    +A  + I  L  L  L   ++ NL D  L  E+I  +
Sbjct: 402 ISMMPSLRVIDLSHTTIKGFTRVEANSEKIPSLPLLEHLIYLESLNLEDAPLSDEVIPPM 461

Query: 445 TGLVSLN 451
           T   +L 
Sbjct: 462 TSFRALK 468



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 122/282 (43%), Gaps = 37/282 (13%)

Query: 15  VYSRC----LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT 70
           +YS C       + L+ F   A        +  +++ +  ++AS  S L   D+SG  + 
Sbjct: 273 IYSICGGDSEVHIPLQKFTASA------ASFGDIDEVFSSIVASSFSFL---DMSGCSL- 322

Query: 71  DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLSFRRNNAITAQGMKAFAG 129
            S L  L+   +L+ LD +   +++D  +E++  +   L  LS + N  IT+Q +   AG
Sbjct: 323 -SNLYGLQKMKSLEHLDISLN-RVTDDAVEYVANIGMKLRYLSLK-NTGITSQALCILAG 379

Query: 130 LI-NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
            + NL  L L         LV +  +  L          + D     + G T +++   +
Sbjct: 380 TVPNLASLSLAYTKIDDSALVYISMMPSLR---------VIDLSHTTIKGFTRVEA---N 427

Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
             K+    +  L+ L  L  LNLE  P++   +  +++  +L YL L    LSD G    
Sbjct: 428 SEKIP--SLPLLEHLIYLESLNLEDAPLSDEVIPPMTSFRALKYLYLKSDFLSDPGLHAL 485

Query: 249 SKIGSLKVLNLGF--NEITDECLVHLKGLTNLESLNLDSCGI 288
           S   +L  ++LGF  + +++  L+       L  L+L  C I
Sbjct: 486 SSASNL--IHLGFCGSVLSNSGLLEFVPPAQLHVLDLSGCWI 525


>gi|414586495|tpg|DAA37066.1| TPA: hypothetical protein ZEAMMB73_067914 [Zea mays]
          Length = 115

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/74 (75%), Positives = 66/74 (89%)

Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
            R FKN++SLE+CGG +TDAGVK+IKDL +LTLLNLSQN  LTDKTLELISGLT LVSLN
Sbjct: 4   FRFFKNIQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLN 63

Query: 452 VSNSRITSAGLRHL 465
           VSNSR++++GL HL
Sbjct: 64  VSNSRVSNSGLHHL 77



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 51/79 (64%)

Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
            G+ N+K L  L  LN+     +TD  ++ +SGLT L SL +S S+V++SG+ +LK LQ 
Sbjct: 23  AGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSNSGLHHLKPLQN 82

Query: 206 LTLLNLEGCPVTAACLDSL 224
           L  L+LE C VTA+ +D L
Sbjct: 83  LRSLSLESCRVTASEMDKL 101



 Score = 45.4 bits (106), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 25/109 (22%)

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQ 239
           N++SL++    +TD+G+  +K L+ LTLLNL +   +T   L+ +S L +L  LN++  +
Sbjct: 9   NIQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSR 68

Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
           +S+ G                        L HLK L NL SL+L+SC +
Sbjct: 69  VSNSG------------------------LHHLKPLQNLRSLSLESCRV 93



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 1/94 (1%)

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQ 359
           N++ LE+    +  +G++++  L  L  +NLS  G ++D +L  ++GL++L SLN+   +
Sbjct: 9   NIQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSR 68

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
           ++++GL  L  L  L  L L   R+T S    LR
Sbjct: 69  VSNSGLHHLKPLQNLRSLSLESCRVTASEMDKLR 102



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 62/107 (57%), Gaps = 4/107 (3%)

Query: 82  NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
           N+QSL+    + I+D G+++++ L  LT L+  +N  +T + ++  +GL  LV L++   
Sbjct: 9   NIQSLEVCGGL-ITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNS 67

Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS--GLTNLKSLQ 186
              + GL +LK L  L SL+++ C  +T S+M  L    L NL S++
Sbjct: 68  RVSNSGLHHLKPLQNLRSLSLESCR-VTASEMDKLRLVALPNLISVR 113



 Score = 42.0 bits (97), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 1/80 (1%)

Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGAR 383
           N++S+ +    I+D  ++ +  L +L  LNL    ++TD  L  ++ LT L  L++  +R
Sbjct: 9   NIQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSR 68

Query: 384 ITDSGAAYLRNFKNLRSLEI 403
           +++SG  +L+  +NLRSL +
Sbjct: 69  VSNSGLHHLKPLQNLRSLSL 88



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 5/95 (5%)

Query: 20  LTEVSLEAFRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK 78
           +T+  ++  +D  AL  L L Q   + DK +++I S  ++L+S+++S S V++SGL HLK
Sbjct: 20  ITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELI-SGLTALVSLNVSNSRVSNSGLHHLK 78

Query: 79  DCSNLQSLDFNFCIQISDGGLEHLR--GLSNLTSL 111
              NL+SL    C +++   ++ LR   L NL S+
Sbjct: 79  PLQNLRSLSLESC-RVTASEMDKLRLVALPNLISV 112



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 264 ITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
           ITD  + ++K L  L  LNL   G + D+ L  ++GL  L  L +S+++V +SGL HL  
Sbjct: 20  ITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSNSGLHHLKP 79

Query: 323 LTNLESINLSFTGISDGSLRKL 344
           L NL S++L    ++   + KL
Sbjct: 80  LQNLRSLSLESCRVTASEMDKL 101


>gi|290981666|ref|XP_002673551.1| predicted protein [Naegleria gruberi]
 gi|284087135|gb|EFC40807.1| predicted protein [Naegleria gruberi]
          Length = 438

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 175/375 (46%), Gaps = 4/375 (1%)

Query: 56  GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
           G  L S+++  + + + G+ +L +C  L S +  +   IS  G  +L  L  LT+L  R 
Sbjct: 31  GIELTSIEIGYNRIGNEGVKYLSECKELTSANL-YGNNISAEGASYLTKLK-LTNLDIRT 88

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
           N  + A+G K    L  L  L++        G   L  L +L +L I  CN I +   K 
Sbjct: 89  N-ELGAEGAKFIGQLSQLKILNIGVNDICAEGAKYLVALNQLTNLGIN-CNRIGEEGAKS 146

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           +S +  L +L IS + + ++G+ Y+  +  LT L +    + A     +  L  L  L++
Sbjct: 147 ISEMKQLTNLDISNNYIGETGVEYVSEMGNLTTLTIIENNLRAEGCKKIRKLKQLTRLSI 206

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
              ++  +G +  S++  L  L +  N I +E   ++  L NL  L++    IG EG  +
Sbjct: 207 YDNKIGAEGAKFISEMEQLMFLEINNNSIRNEGTEYISQLGNLTELDISHNEIGSEGAKH 266

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           ++    L CL  S  ++ +    +LS LT L  + +  + I D S++ +  L SL  L L
Sbjct: 267 ISQFKQLTCLRFSYNKINAESFEYLSTLTQLTDLRICSSSIGDDSIKSITNLKSLTILYL 326

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
           +   I+D G   ++ LT LT L +    I+D G  +L     L  L++    + + G ++
Sbjct: 327 NGNNISDNGCKNISELTQLTDLSMALNNISDEGCKFLSQLTQLTELDVSYNRIGNIGAEY 386

Query: 416 IKDLSSLTLLNLSQN 430
           I ++  L  L +  N
Sbjct: 387 INEMKQLKHLAIQAN 401



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 142/304 (46%), Gaps = 18/304 (5%)

Query: 69  VTDSGLIHLKDCSNLQSLDF--NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
           + + G   + +   L +LD   N+   I + G+E++  + NLT+L+   NN + A+G K 
Sbjct: 139 IGEEGAKSISEMKQLTNLDISNNY---IGETGVEYVSEMGNLTTLTIIENN-LRAEGCKK 194

Query: 127 FAGLINLVKLDL-ERCTRIHGG--LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
              L  L +L + +      G   +  ++ LM LE  N    N I +   + +S L NL 
Sbjct: 195 IRKLKQLTRLSIYDNKIGAEGAKFISEMEQLMFLEINN----NSIRNEGTEYISQLGNLT 250

Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
            L IS +++   G  ++   ++LT L      + A   + LS L  L  L +    + DD
Sbjct: 251 ELDISHNEIGSEGAKHISQFKQLTCLRFSYNKINAESFEYLSTLTQLTDLRICSSSIGDD 310

Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
             +  + + SL +L L  N I+D    ++  LT L  L++    I DEG   L+ L  L 
Sbjct: 311 SIKSITNLKSLTILYLNGNNISDNGCKNISELTQLTDLSMALNNISDEGCKFLSQLTQLT 370

Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
            L++S  ++G+ G  +++ +  L+ +      I   ++R  + +  LK+L +D  ++  T
Sbjct: 371 ELDVSYNRIGNIGAEYINEMKQLKHL-----AIQANNIRNESKIDQLKTLLIDKTKVEVT 425

Query: 364 GLAA 367
              A
Sbjct: 426 NYKA 429


>gi|290997674|ref|XP_002681406.1| predicted protein [Naegleria gruberi]
 gi|284095030|gb|EFC48662.1| predicted protein [Naegleria gruberi]
          Length = 426

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 162/316 (51%), Gaps = 2/316 (0%)

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
           + +L SL+I + N I     K +S +  L SL I  +++ D G  ++  +++LT L++  
Sbjct: 25  MKQLTSLDIIY-NRIGAVGAKLISKMKQLTSLDIGGNQIGDEGAKFISEMKQLTSLSIYN 83

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
             + A   + +S +  L  L++   ++ D+G +   ++  L  L++  N I DE +  + 
Sbjct: 84  NLIGAVGFEFISEMKQLTSLDICYNEIGDEGVKSICEMKQLTSLSIYNNRIGDEGVKFIS 143

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
            +  L SL++++  IG +G  ++  +  L  L + + Q G+ G + +S +  L S+++S 
Sbjct: 144 EMKQLTSLDINNNRIGVQGAKSICEMKQLTSLSIYNNQTGAVGAKFISEMKQLTSLDISV 203

Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
             I     + ++ +  L SLN+   +I   G+  ++ +  LT LD+ G  I D GA ++ 
Sbjct: 204 NEIGVEGAKFISEMKQLTSLNICYNRIGAEGVKLISEMKQLTSLDIGGNEIGDEGAKFIS 263

Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
             K L SL IC   + D G K I ++  LT L  + N  +  +  +LIS +  L SLN+S
Sbjct: 264 EMKQLTSLNICENQIGDEGAKSISEMKQLTSLG-AYNNEIGVEGTKLISEMKQLTSLNIS 322

Query: 454 NSRITSAGLRHLNHAR 469
            ++I   G + ++  +
Sbjct: 323 KNQIGDEGAKLISEMK 338



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 110/435 (25%), Positives = 196/435 (45%), Gaps = 32/435 (7%)

Query: 35  DLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQI 94
           D+   Q   V  K++    S+   L S+D+  + +   G   +     L SLD     QI
Sbjct: 8   DIGENQIGAVGAKFI----SEMKQLTSLDIIYNRIGAVGAKLISKMKQLTSLDIGGN-QI 62

Query: 95  SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
            D G + +  +  LTSLS   NN I A G +  + +  L  LD+  C             
Sbjct: 63  GDEGAKFISEMKQLTSLSIY-NNLIGAVGFEFISEMKQLTSLDI--C------------- 106

Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
                      N I D  +K +  +  L SL I  +++ D G+ ++  +++LT L++   
Sbjct: 107 ----------YNEIGDEGVKSICEMKQLTSLSIYNNRIGDEGVKFISEMKQLTSLDINNN 156

Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
            +      S+  +  L  L++   Q    G +  S++  L  L++  NEI  E    +  
Sbjct: 157 RIGVQGAKSICEMKQLTSLSIYNNQTGAVGAKFISEMKQLTSLDISVNEIGVEGAKFISE 216

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           +  L SLN+    IG EG+  ++ +  L  L++   ++G  G + +S +  L S+N+   
Sbjct: 217 MKQLTSLNICYNRIGAEGVKLISEMKQLTSLDIGGNEIGDEGAKFISEMKQLTSLNICEN 276

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            I D   + ++ +  L SL     +I   G   ++ +  LT L++   +I D GA  +  
Sbjct: 277 QIGDEGAKSISEMKQLTSLGAYNNEIGVEGTKLISEMKQLTSLNISKNQIGDEGAKLISE 336

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
            K L SL+I    + D GVK I ++  L  LN+S+N  + D+  +LIS +  L SL++  
Sbjct: 337 MKQLASLDIYYNEIGDEGVKLISEMKQLKSLNISKN-QIGDEGAKLISEMKQLTSLDIHF 395

Query: 455 SRITSAGLRHLNHAR 469
           + I   G++ ++  +
Sbjct: 396 NEIGDEGVKLISEMK 410



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 160/331 (48%), Gaps = 3/331 (0%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+   L S+D+  +++ D G+  + +   L SL   +  +I D G++ +  +  LTSL  
Sbjct: 95  SEMKQLTSLDICYNEIGDEGVKSICEMKQLTSLSI-YNNRIGDEGVKFISEMKQLTSLDI 153

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
             NN I  QG K+   +  L  L +        G   +  + +L SL+I   N I     
Sbjct: 154 N-NNRIGVQGAKSICEMKQLTSLSIYNNQTGAVGAKFISEMKQLTSLDIS-VNEIGVEGA 211

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           K +S +  L SL I  +++   G+  +  +++LT L++ G  +       +S +  L  L
Sbjct: 212 KFISEMKQLTSLNICYNRIGAEGVKLISEMKQLTSLDIGGNEIGDEGAKFISEMKQLTSL 271

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           N+   Q+ D+G +  S++  L  L    NEI  E    +  +  L SLN+    IGDEG 
Sbjct: 272 NICENQIGDEGAKSISEMKQLTSLGAYNNEIGVEGTKLISEMKQLTSLNISKNQIGDEGA 331

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
             ++ +  L  L++   ++G  G++ +S +  L+S+N+S   I D   + ++ +  L SL
Sbjct: 332 KLISEMKQLASLDIYYNEIGDEGVKLISEMKQLKSLNISKNQIGDEGAKLISEMKQLTSL 391

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARI 384
           ++   +I D G+  ++ +  LT L ++  ++
Sbjct: 392 DIHFNEIGDEGVKLISEMKQLTSLSIYNQKM 422



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 142/291 (48%), Gaps = 1/291 (0%)

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           +  LKSL I  +++   G  ++  +++LT L++    + A     +S +  L  L++   
Sbjct: 1   MKQLKSLDIGENQIGAVGAKFISEMKQLTSLDIIYNRIGAVGAKLISKMKQLTSLDIGGN 60

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
           Q+ D+G +  S++  L  L++  N I       +  +  L SL++    IGDEG+ ++  
Sbjct: 61  QIGDEGAKFISEMKQLTSLSIYNNLIGAVGFEFISEMKQLTSLDICYNEIGDEGVKSICE 120

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
           +  L  L + + ++G  G++ +S +  L S++++   I     + +  +  L SL++   
Sbjct: 121 MKQLTSLSIYNNRIGDEGVKFISEMKQLTSLDINNNRIGVQGAKSICEMKQLTSLSIYNN 180

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
           Q    G   ++ +  LT LD+    I   GA ++   K L SL IC   +   GVK I +
Sbjct: 181 QTGAVGAKFISEMKQLTSLDISVNEIGVEGAKFISEMKQLTSLNICYNRIGAEGVKLISE 240

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           +  LT L++  N  + D+  + IS +  L SLN+  ++I   G + ++  +
Sbjct: 241 MKQLTSLDIGGN-EIGDEGAKFISEMKQLTSLNICENQIGDEGAKSISEMK 290



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 115/243 (47%), Gaps = 5/243 (2%)

Query: 73  GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
           G   + +   L SLD +   +I   G + +  +  LTSL+   N  I A+G+K  + +  
Sbjct: 186 GAKFISEMKQLTSLDISVN-EIGVEGAKFISEMKQLTSLNICYNR-IGAEGVKLISEMKQ 243

Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC-NCITDSDMKPLSGLTNLKSLQISCSK 191
           L  LD+        G   +  + +L SLNI  C N I D   K +S +  L SL    ++
Sbjct: 244 LTSLDIGGNEIGDEGAKFISEMKQLTSLNI--CENQIGDEGAKSISEMKQLTSLGAYNNE 301

Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
           +   G   +  +++LT LN+    +       +S +  L  L++   ++ D+G +  S++
Sbjct: 302 IGVEGTKLISEMKQLTSLNISKNQIGDEGAKLISEMKQLASLDIYYNEIGDEGVKLISEM 361

Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
             LK LN+  N+I DE    +  +  L SL++    IGDEG+  ++ +  L  L + + +
Sbjct: 362 KQLKSLNISKNQIGDEGAKLISEMKQLTSLDIHFNEIGDEGVKLISEMKQLTSLSIYNQK 421

Query: 312 VGS 314
           + S
Sbjct: 422 MKS 424


>gi|421897032|ref|ZP_16327415.1| type III effector gala6 protein [Ralstonia solanacearum MolK2]
 gi|206588197|emb|CAQ18765.1| type III effector gala6 protein [Ralstonia solanacearum MolK2]
          Length = 625

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 149/479 (31%), Positives = 217/479 (45%), Gaps = 35/479 (7%)

Query: 3   PRDISQQIFNELV-YSRCLTEVSLEAFRDCALQDLCLGQYPGVN------DKWMDVIASQ 55
           PR   +++  EL   SR +  V+    RD A+    LG+YP +       +  ++ + + 
Sbjct: 103 PRRAMREVNRELRNASRAV--VTHLTIRDPAMF-AHLGKYPALTSVRFKGELTLEALKAL 159

Query: 56  GSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
              +  +D+S   G  V+++GL HL     L+SL  N  I+I   G   L   ++LTSLS
Sbjct: 160 PPGVEHLDISRCTGRGVSNAGLAHLA-TRPLKSLSLN-GIEIDAEGARLLATCASLTSLS 217

Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--------MKLESLNIKW 164
                +I  +   A A   ++  LDL          VN+ G           L SLN+  
Sbjct: 218 LT-GCSIGDRAATALAQSRSIASLDLS---------VNMIGPDGARALASAPLLSLNLH- 266

Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
            N I D     L+    LKSL  S + + D+G+        LT LNL G  +  A   +L
Sbjct: 267 NNGIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTVLTQLNLAGNMIGPAGARAL 326

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
               SL  L+L+  +L D G +  +   SL  LNL  NEI D+    L   T L+SLNL 
Sbjct: 327 RRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNLRHNEIGDDGTEALARNTTLKSLNLS 386

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
              IG  G   L G   L+ L+L    +   G   L+  T+L S++L    I D   R L
Sbjct: 387 YNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLGSNRIGDDGARAL 446

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
           A   +L  L+L    I D G  AL     LT L+L+G  + D GAA L     L SL + 
Sbjct: 447 ATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAALAQHPRLTSLNLG 506

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
              +   G +H+   ++LT L+LS+N  +  +  E +S  T L +LNVS + I   G R
Sbjct: 507 RNRIGPNGAQHLAKSATLTELDLSEN-RIGPEGAEALSLSTVLTTLNVSGNAIGEKGAR 564



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 118/397 (29%), Positives = 169/397 (42%), Gaps = 41/397 (10%)

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
             HL     LTS+ F+    +T + +KA    +    LD+ RCT   G  V+  GL  L 
Sbjct: 133 FAHLGKYPALTSVRFK--GELTLEALKALPPGVE--HLDISRCT---GRGVSNAGLAHLA 185

Query: 159 SLNIKWCNC----ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
           +  +K  +     I     + L+   +L SL ++   + D     L   + +  L+L   
Sbjct: 186 TRPLKSLSLNGIEIDAEGARLLATCASLTSLSLTGCSIGDRAATALAQSRSIASLDLS-- 243

Query: 215 PVTAACLDSLSALGS--LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
            V     D   AL S  L  LNL+   + D+G    +  G+LK LN   N I D  ++  
Sbjct: 244 -VNMIGPDGARALASAPLLSLNLHNNGIGDEGALALATSGTLKSLNASNNGIGDAGVLGF 302

Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
              T L  LNL    IG  G   L    +L  L+LS  ++G +G + L+G  +L S+NL 
Sbjct: 303 ADNTVLTQLNLAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNLR 362

Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-------FGA--- 382
              I D     LA  ++LKSLNL    I   G  AL   T L  LDL       +GA   
Sbjct: 363 HNEIGDDGTEALARNTTLKSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASAL 422

Query: 383 --------------RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
                         RI D GA  L   + L  L++    + DAG + +    SLT LNL 
Sbjct: 423 ARNTSLASLHLGSNRIGDDGARALATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLY 482

Query: 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
            N  + D     ++    L SLN+  +RI   G +HL
Sbjct: 483 GN-EVDDDGAAALAQHPRLTSLNLGRNRIGPNGAQHL 518



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 149/337 (44%), Gaps = 4/337 (1%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           + LLS++L  + + D G + L     L+SL+ +    I D G+      + LT L+    
Sbjct: 258 APLLSLNLHNNGIGDEGALALATSGTLKSLNASNN-GIGDAGVLGFADNTVLTQLNLA-G 315

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N I   G +A     +L +LDL        G   L G   L SLN++  N I D   + L
Sbjct: 316 NMIGPAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNLR-HNEIGDDGTEAL 374

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           +  T LKSL +S + +   G   L G   L  L+L  C +      +L+   SL  L+L 
Sbjct: 375 ARNTTLKSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLG 434

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             ++ DDG    +   +L +L+L  N I D     L G  +L SLNL    + D+G   L
Sbjct: 435 SNRIGDDGARALATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAAL 494

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
                L  L L   ++G +G +HL+    L  ++LS   I       L+  + L +LN+ 
Sbjct: 495 AQHPRLTSLNLGRNRIGPNGAQHLAKSATLTELDLSENRIGPEGAEALSLSTVLTTLNVS 554

Query: 357 ARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYL 392
              I + G  A     T LT LD    R  ++GA  L
Sbjct: 555 GNAIGEKGARAFAEKSTSLTSLDARNNRRGEAGAKML 591


>gi|290998898|ref|XP_002682017.1| predicted protein [Naegleria gruberi]
 gi|284095643|gb|EFC49273.1| predicted protein [Naegleria gruberi]
          Length = 408

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 145/277 (52%), Gaps = 2/277 (0%)

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
           + +L SLNI   N I     K +S +T L SL IS +++   G  ++  +++LT L++  
Sbjct: 130 MKQLTSLNIS-DNQIGLEGAKYISEMTQLTSLDISVNRIGVEGAKFISEMKQLTSLDISV 188

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
             +    +  +S +  L  L+++  Q+  +G +  S++  L  L++  N I  E    + 
Sbjct: 189 NRIGVEGVKFISEMKQLTSLDISDNQIGLEGSKYISEMTQLTSLDISVNRIGVEGAKFIS 248

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
            +  L SLN+    IG EG+  ++ +  L  L++SD Q+G  G +++S +T L S+++S 
Sbjct: 249 EMKQLTSLNISVNRIGVEGVKFISEMKQLTSLDISDNQIGL-GAKYISEMTQLTSLDISV 307

Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
             I D   + ++ +  L SL++   QI   G   ++ +T LT L +   RI   GA ++ 
Sbjct: 308 NRIGDEGAKFISEMKQLTSLDICDNQIGVEGAKFISEMTQLTSLVITSNRIGVEGAKFIS 367

Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
             K L SL+I G  + D GVK I ++  LT LN+S N
Sbjct: 368 EMKQLTSLDISGNRIGDEGVKFISEMKQLTSLNISVN 404



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 140/284 (49%), Gaps = 30/284 (10%)

Query: 215 PVTAACLDSL------SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
            V+   LDSL      S +  L  LN++  Q+  +G +  S++  L  L++  N I  E 
Sbjct: 112 KVSRRLLDSLEQPKFISEMKQLTSLNISDNQIGLEGAKYISEMTQLTSLDISVNRIGVEG 171

Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
              +  +  L SL++    IG EG+  ++ +  L  L++SD Q+G  G +++S +T L S
Sbjct: 172 AKFISEMKQLTSLDISVNRIGVEGVKFISEMKQLTSLDISDNQIGLEGSKYISEMTQLTS 231

Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNL--------------DARQIT-------DTGLAA 367
           +++S   I     + ++ +  L SLN+              + +Q+T         GL A
Sbjct: 232 LDISVNRIGVEGAKFISEMKQLTSLNISVNRIGVEGVKFISEMKQLTSLDISDNQIGLGA 291

Query: 368 --LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
             ++ +T LT LD+   RI D GA ++   K L SL+IC   +   G K I +++ LT L
Sbjct: 292 KYISEMTQLTSLDISVNRIGDEGAKFISEMKQLTSLDICDNQIGVEGAKFISEMTQLTSL 351

Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
            ++ N  +  +  + IS +  L SL++S +RI   G++ ++  +
Sbjct: 352 VITSN-RIGVEGAKFISEMKQLTSLDISGNRIGDEGVKFISEMK 394



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 139/281 (49%), Gaps = 5/281 (1%)

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIK 163
           +  LTSL+   +N I  +G K  + +  L  LD+    RI   G   +  + +L SL+I 
Sbjct: 130 MKQLTSLNIS-DNQIGLEGAKYISEMTQLTSLDIS-VNRIGVEGAKFISEMKQLTSLDIS 187

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
             N I    +K +S +  L SL IS +++   G  Y+  + +LT L++    +       
Sbjct: 188 -VNRIGVEGVKFISEMKQLTSLDISDNQIGLEGSKYISEMTQLTSLDISVNRIGVEGAKF 246

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           +S +  L  LN++  ++  +G +  S++  L  L++  N+I      ++  +T L SL++
Sbjct: 247 ISEMKQLTSLNISVNRIGVEGVKFISEMKQLTSLDISDNQIGLGAK-YISEMTQLTSLDI 305

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
               IGDEG   ++ +  L  L++ D Q+G  G + +S +T L S+ ++   I     + 
Sbjct: 306 SVNRIGDEGAKFISEMKQLTSLDICDNQIGVEGAKFISEMTQLTSLVITSNRIGVEGAKF 365

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
           ++ +  L SL++   +I D G+  ++ +  LT L++   RI
Sbjct: 366 ISEMKQLTSLDISGNRIGDEGVKFISEMKQLTSLNISVNRI 406



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 123/261 (47%), Gaps = 6/261 (2%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+ + L S+D+S + +   G   + +   L SLD +   +I   G++ +  +  LTSL  
Sbjct: 152 SEMTQLTSLDISVNRIGVEGAKFISEMKQLTSLDISVN-RIGVEGVKFISEMKQLTSLDI 210

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSD 172
             +N I  +G K  + +  L  LD+    RI   G   +  + +L SLNI   N I    
Sbjct: 211 S-DNQIGLEGSKYISEMTQLTSLDIS-VNRIGVEGAKFISEMKQLTSLNIS-VNRIGVEG 267

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           +K +S +  L SL IS +++   G  Y+  + +LT L++    +       +S +  L  
Sbjct: 268 VKFISEMKQLTSLDISDNQI-GLGAKYISEMTQLTSLDISVNRIGDEGAKFISEMKQLTS 326

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           L++   Q+  +G +  S++  L  L +  N I  E    +  +  L SL++    IGDEG
Sbjct: 327 LDICDNQIGVEGAKFISEMTQLTSLVITSNRIGVEGAKFISEMKQLTSLDISGNRIGDEG 386

Query: 293 LVNLTGLCNLKCLELSDTQVG 313
           +  ++ +  L  L +S  ++G
Sbjct: 387 VKFISEMKQLTSLNISVNRIG 407


>gi|290980745|ref|XP_002673092.1| predicted protein [Naegleria gruberi]
 gi|284086673|gb|EFC40348.1| predicted protein [Naegleria gruberi]
          Length = 498

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 96/392 (24%), Positives = 180/392 (45%), Gaps = 31/392 (7%)

Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR---------------- 143
           E L  +  L  L+   N+ I   G K    L  L  L +  C                  
Sbjct: 98  EILDSMKELKKLNIEYNSNIDPSGFKYICSLEQLTDLYMTFCYFRLPIAKHLPSLKSLTY 157

Query: 144 --IHGGLVNLKG------LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
             I G  + ++G      + +L+ L+I   N I     K +SGL  L  L I  +++T  
Sbjct: 158 LLITGNYIGVEGAKYIGEMKQLKQLHIA-NNNIGPEGAKYISGLEQLTFLNIRANEITVD 216

Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
           G  ++  +++LT+LN+ G  +       +S +  L  L+++   + ++G +  S++ ++ 
Sbjct: 217 GAKFISEMKQLTVLNIIGNNICDEGAKFISGMKQLTNLDISVNNIGENGAKYVSEMMNIT 276

Query: 256 VLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
            LN+GFN I D  +C   +K LT+L   N++S  IG  G+  ++    L  L ++   + 
Sbjct: 277 KLNIGFNSINDGVKCFGEMKQLTDL---NVNSRCIGSNGVEYISSFNQLTHLSIAKNLIS 333

Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
                H+S + NL  +++S   I D  ++ ++ ++ L  LN+ +  IT  G+  +  +  
Sbjct: 334 LYEAMHISQMKNLIKLDISDNDIGDNGVQSISEMNQLTELNVSSIDITPIGIQYICKMDN 393

Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
           LT+L      I   GA  +   K+L  L I    + D G K I ++  LT L++  N  +
Sbjct: 394 LTYLISAHNNIGAKGAKQISEMKHLAQLSIYHNAVGDEGAKFISEMEQLTFLDIGYN-EI 452

Query: 434 TDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
            D+ ++ + G+  L  LN  ++ I+  G +++
Sbjct: 453 GDEGVKFLCGMKQLTRLNTVDNNISDEGEKYI 484



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 149/326 (45%), Gaps = 9/326 (2%)

Query: 98  GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
           G +++  +  L  L    NN I  +G K  +GL  L  L++        G   +  + +L
Sbjct: 169 GAKYIGEMKQLKQLHIANNN-IGPEGAKYISGLEQLTFLNIRANEITVDGAKFISEMKQL 227

Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
             LNI   N I D   K +SG+  L +L IS + + ++G  Y+  +  +T LN+    + 
Sbjct: 228 TVLNI-IGNNICDEGAKFISGMKQLTNLDISVNNIGENGAKYVSEMMNITKLNIGFNSIN 286

Query: 218 --AACLDSLSALGSLFYLNLN-RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
               C   +  L  L   N+N RC +  +G E  S    L  L++  N I+    +H+  
Sbjct: 287 DGVKCFGEMKQLTDL---NVNSRC-IGSNGVEYISSFNQLTHLSIAKNLISLYEAMHISQ 342

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           + NL  L++    IGD G+ +++ +  L  L +S   +   G++++  + NL  +  +  
Sbjct: 343 MKNLIKLDISDNDIGDNGVQSISEMNQLTELNVSSIDITPIGIQYICKMDNLTYLISAHN 402

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            I     ++++ +  L  L++    + D G   ++ +  LT LD+    I D G  +L  
Sbjct: 403 NIGAKGAKQISEMKHLAQLSIYHNAVGDEGAKFISEMEQLTFLDIGYNEIGDEGVKFLCG 462

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLS 420
            K L  L      ++D G K+I++++
Sbjct: 463 MKQLTRLNTVDNNISDEGEKYIREMN 488



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 106/222 (47%), Gaps = 3/222 (1%)

Query: 245 CEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
           CE    +  LK LN+ +N   D     ++  L  L  L +  C        +L  L +L 
Sbjct: 97  CEILDSMKELKKLNIEYNSNIDPSGFKYICSLEQLTDLYMTFCYFRLPIAKHLPSLKSLT 156

Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
            L ++   +G  G +++  +  L+ ++++   I     + ++GL  L  LN+ A +IT  
Sbjct: 157 YLLITGNYIGVEGAKYIGEMKQLKQLHIANNNIGPEGAKYISGLEQLTFLNIRANEITVD 216

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
           G   ++ +  LT L++ G  I D GA ++   K L +L+I    + + G K++ ++ ++T
Sbjct: 217 GAKFISEMKQLTVLNIIGNNICDEGAKFISGMKQLTNLDISVNNIGENGAKYVSEMMNIT 276

Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
            LN+  N    +  ++    +  L  LNV++  I S G+ ++
Sbjct: 277 KLNIGFNS--INDGVKCFGEMKQLTDLNVNSRCIGSNGVEYI 316



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 131/288 (45%), Gaps = 3/288 (1%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           +I+  G + +  +  LT L+   NN I  +G K  +G+  L  LD+        G   + 
Sbjct: 212 EITVDGAKFISEMKQLTVLNIIGNN-ICDEGAKFISGMKQLTNLDISVNNIGENGAKYVS 270

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
            +M +  LNI + N I D  +K    +  L  L ++   +  +G+ Y+    +LT L++ 
Sbjct: 271 EMMNITKLNIGF-NSINDG-VKCFGEMKQLTDLNVNSRCIGSNGVEYISSFNQLTHLSIA 328

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
              ++      +S + +L  L+++   + D+G +  S++  L  LN+   +IT   + ++
Sbjct: 329 KNLISLYEAMHISQMKNLIKLDISDNDIGDNGVQSISEMNQLTELNVSSIDITPIGIQYI 388

Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
             + NL  L      IG +G   ++ + +L  L +    VG  G + +S +  L  +++ 
Sbjct: 389 CKMDNLTYLISAHNNIGAKGAKQISEMKHLAQLSIYHNAVGDEGAKFISEMEQLTFLDIG 448

Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
           +  I D  ++ L G+  L  LN     I+D G   +  +    H+ ++
Sbjct: 449 YNEIGDEGVKFLCGMKQLTRLNTVDNNISDEGEKYIREMNLADHVGIY 496



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 124/268 (46%), Gaps = 6/268 (2%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+   L  +++ G+++ D G   +     L +LD +    I + G +++  + N+T L+ 
Sbjct: 222 SEMKQLTVLNIIGNNICDEGAKFISGMKQLTNLDISVN-NIGENGAKYVSEMMNITKLNI 280

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLE-RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
             N+     G+K F  +  L  L++  RC     G+  +    +L  L+I   N I+  +
Sbjct: 281 GFNS--INDGVKCFGEMKQLTDLNVNSRCIG-SNGVEYISSFNQLTHLSIAK-NLISLYE 336

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
              +S + NL  L IS + + D+G+  +  + +LT LN+    +T   +  +  + +L Y
Sbjct: 337 AMHISQMKNLIKLDISDNDIGDNGVQSISEMNQLTELNVSSIDITPIGIQYICKMDNLTY 396

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           L      +   G ++ S++  L  L++  N + DE    +  +  L  L++    IGDEG
Sbjct: 397 LISAHNNIGAKGAKQISEMKHLAQLSIYHNAVGDEGAKFISEMEQLTFLDIGYNEIGDEG 456

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHL 320
           +  L G+  L  L   D  +   G +++
Sbjct: 457 VKFLCGMKQLTRLNTVDNNISDEGEKYI 484



 Score = 45.8 bits (107), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 5/154 (3%)

Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLT 375
           L  L  + NL  IN    G +      L  +  LK LN++    I  +G   + SL  LT
Sbjct: 76  LPFLENIANLRVINNEEIGFN---CEILDSMKELKKLNIEYNSNIDPSGFKYICSLEQLT 132

Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
            L +         A +L + K+L  L I G  +   G K+I ++  L  L+++ N N+  
Sbjct: 133 DLYMTFCYFRLPIAKHLPSLKSLTYLLITGNYIGVEGAKYIGEMKQLKQLHIANN-NIGP 191

Query: 436 KTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           +  + ISGL  L  LN+  + IT  G + ++  +
Sbjct: 192 EGAKYISGLEQLTFLNIRANEITVDGAKFISEMK 225


>gi|255537779|ref|XP_002509956.1| protein binding protein, putative [Ricinus communis]
 gi|223549855|gb|EEF51343.1| protein binding protein, putative [Ricinus communis]
          Length = 597

 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 180/371 (48%), Gaps = 33/371 (8%)

Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDS 171
            R  NA+ A+ M        L  L+L  C +I    L +L G+  L+ L++     +TD+
Sbjct: 70  LRGENAVDAEWMAYLGAFRYLRYLNLADCNKITSSALWSLTGMTSLKELDLSRSVKVTDA 129

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
            ++ L  +++L+ L+I  + +T  G+A L  L  L++L+L G PVT   L SL  L  L 
Sbjct: 130 GIRHLLSISSLEILRIPETGLTAKGVALLTSLTNLSVLDLGGLPVTDMALSSLQVLTKLE 189

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
           YL+L    +S++G         L  LNLG+  +T      L  + +LE LNL +C I  E
Sbjct: 190 YLDLWGSNISNNGVAVLQLFPKLSFLNLGWTSVT-----RLPSMLSLEYLNLSNCTI--E 242

Query: 292 GLVNLTGLCNLKCLELSDTQV---GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
            L+   G  +   L    T+V   G++         N+E   LSF  +S+ SL+    L 
Sbjct: 243 SLLEGDGDGDKAPL----TKVILSGATFPNEAEAFYNIEPRFLSFLDVSNSSLQGFYFLH 298

Query: 349 SLK---SLNLDARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYL-RNFKNLRSLEI 403
            +K    L+L +  + D  + A+  +   LT+L+L   R+T +G A L  +   L  L +
Sbjct: 299 DMKMLEHLDLSSTMMGDDAIEAVACIGANLTNLNLSKTRVTSAGLAILAEHVPKLEYLSL 358

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD------------KTLELISGLTGLVSLN 451
               + D  + +I  +SSL +++LS N N+               +L+ + GL+GL SLN
Sbjct: 359 SHALVDDFALSYIGMMSSLKVVDLS-NTNIKGFIRQMGVETNLIPSLKALQGLSGLQSLN 417

Query: 452 VSNSRITSAGL 462
           + ++++  A +
Sbjct: 418 LEHTQVRDAAV 428



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 186/432 (43%), Gaps = 93/432 (21%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           +T S L  L   ++L+ LD +  ++++D G+ HL  +S+L  L       +TA+G+    
Sbjct: 101 ITSSALWSLTGMTSLKELDLSRSVKVTDAGIRHLLSISSLEILRIP-ETGLTAKGVALLT 159

Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
            L NL  LDL       GGL                   +TD  +  L  LT L+ L + 
Sbjct: 160 SLTNLSVLDL-------GGL------------------PVTDMALSSLQVLTKLEYLDLW 194

Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ----LSDDG 244
            S ++++G+A L+   KL+ LNL    VT      L ++ SL YLNL+ C     L  DG
Sbjct: 195 GSNISNNGVAVLQLFPKLSFLNLGWTSVT-----RLPSMLSLEYLNLSNCTIESLLEGDG 249

Query: 245 --------------------CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
                                E F  I    +  L  +  + +    L  +  LE L+L 
Sbjct: 250 DGDKAPLTKVILSGATFPNEAEAFYNIEPRFLSFLDVSNSSLQGFYFLHDMKMLEHLDLS 309

Query: 285 SCGIGDEGLVNLTGL-CNLKCLELSDTQVGSSGL----RHLSGL---------------- 323
           S  +GD+ +  +  +  NL  L LS T+V S+GL     H+  L                
Sbjct: 310 STMMGDDAIEAVACIGANLTNLNLSKTRVTSAGLAILAEHVPKLEYLSLSHALVDDFALS 369

Query: 324 -----TNLESINLSFTGISD------------GSLRKLAGLSSLKSLNLDARQITDTGLA 366
                ++L+ ++LS T I               SL+ L GLS L+SLNL+  Q+ D  +A
Sbjct: 370 YIGMMSSLKVVDLSNTNIKGFIRQMGVETNLIPSLKALQGLSGLQSLNLEHTQVRDAAVA 429

Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
            ++S   L+HL L  A + D    +L +   L SL I    LT+ G+   +   +L +L+
Sbjct: 430 PVSSFQELSHLSLKSASLADETLYHLSSLSKLTSLVIGDAVLTNCGLDLFRPPVALKMLD 489

Query: 427 LSQNCNLTDKTL 438
           L     LT++ +
Sbjct: 490 LRGCWLLTEEAI 501


>gi|290978443|ref|XP_002671945.1| predicted protein [Naegleria gruberi]
 gi|284085518|gb|EFC39201.1| predicted protein [Naegleria gruberi]
          Length = 381

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 161/319 (50%), Gaps = 5/319 (1%)

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
           +  L+SL+I   N + D  +K +S +  L  L +S +K    G   + G+  LT LN+  
Sbjct: 1   MQNLKSLSI-VGNGLVDEHLKEISEMKGLTLLDVSENKFGKEGAEKISGMVGLTTLNIND 59

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
             +       +  +  L  L +  C++ ++G    S++ +L  LNL  N I D+   ++ 
Sbjct: 60  NYILDEGAKFIGTMKQLTLLKMKYCEIREEGARAISELKNLTFLNLHGNFIGDKGASYIS 119

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE---SIN 330
            + NL  LN+ S  +  EG  +++GL NLK L +   Q+G  G + +S + +LE   S++
Sbjct: 120 EMVNLTHLNVGSTQLTAEGARHVSGLKNLKSLLIHTNQIGHQGAKWISTMKDLEGLTSLD 179

Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
           +S   I D  ++ L+ +S+L  L++ +  +   G+ ++  + GL  L++    +  SGA 
Sbjct: 180 VSGNSILDQGVQYLSEMSNLTHLDIGSNHVGVKGIESIIGMKGLISLNVSSNDLGSSGAK 239

Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
            +    NL SL I    L   G K I ++ ++T+L + +N ++ D+  + I  +  L SL
Sbjct: 240 LISGMSNLTSLNISANRLLGEGAKFIGEMHNVTIL-VIRNNDIGDEGAKFICKMKQLKSL 298

Query: 451 NVSNSRITSAGLRHLNHAR 469
           N   +RI+S G   ++  +
Sbjct: 299 NAVYNRISSKGFESISEMK 317



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 155/317 (48%), Gaps = 28/317 (8%)

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           + +SG+  L +L I+ + + D G  ++  +++LTLL ++ C +      ++S L +L +L
Sbjct: 44  EKISGMVGLTTLNINDNYILDEGAKFIGTMKQLTLLKMKYCEIREEGARAISELKNLTFL 103

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG---- 289
           NL+   + D G    S++ +L  LN+G  ++T E   H+ GL NL+SL + +  IG    
Sbjct: 104 NLHGNFIGDKGASYISEMVNLTHLNVGSTQLTAEGARHVSGLKNLKSLLIHTNQIGHQGA 163

Query: 290 -----------------------DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
                                  D+G+  L+ + NL  L++    VG  G+  + G+  L
Sbjct: 164 KWISTMKDLEGLTSLDVSGNSILDQGVQYLSEMSNLTHLDIGSNHVGVKGIESIIGMKGL 223

Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
            S+N+S   +     + ++G+S+L SLN+ A ++   G   +  +  +T L +    I D
Sbjct: 224 ISLNVSSNDLGSSGAKLISGMSNLTSLNISANRLLGEGAKFIGEMHNVTILVIRNNDIGD 283

Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
            GA ++   K L+SL      ++  G + I ++  LT L++  N  +  K  + +  L  
Sbjct: 284 EGAKFICKMKQLKSLNAVYNRISSKGFESISEMKQLTSLDIGYNS-IDSKGAKSVRKLKN 342

Query: 447 LVSLNVSNSRITSAGLR 463
           L SLNV ++ I   GL+
Sbjct: 343 LTSLNVRSNMIDDEGLK 359



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 166/349 (47%), Gaps = 30/349 (8%)

Query: 100 EHLRGLSNLTSLSF--RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
           EHL+ +S +  L+      N    +G +  +G++ L  L++     +  G   +  + +L
Sbjct: 17  EHLKEISEMKGLTLLDVSENKFGKEGAEKISGMVGLTTLNINDNYILDEGAKFIGTMKQL 76

Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
             L +K+C  I +   + +S L NL  L +  + + D G +Y+  +  LT LN+    +T
Sbjct: 77  TLLKMKYCE-IREEGARAISELKNLTFLNLHGNFIGDKGASYISEMVNLTHLNVGSTQLT 135

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK---VLNLGFNEITDECLVHLKG 274
           A     +S L +L  L ++  Q+   G +  S +  L+    L++  N I D+ + +L  
Sbjct: 136 AEGARHVSGLKNLKSLLIHTNQIGHQGAKWISTMKDLEGLTSLDVSGNSILDQGVQYLSE 195

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS-- 332
           ++NL  L++ S  +G +G+ ++ G+  L  L +S   +GSSG + +SG++NL S+N+S  
Sbjct: 196 MSNLTHLDIGSNHVGVKGIESIIGMKGLISLNVSSNDLGSSGAKLISGMSNLTSLNISAN 255

Query: 333 --------FTG--------------ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
                   F G              I D   + +  +  LKSLN    +I+  G  +++ 
Sbjct: 256 RLLGEGAKFIGEMHNVTILVIRNNDIGDEGAKFICKMKQLKSLNAVYNRISSKGFESISE 315

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
           +  LT LD+    I   GA  +R  KNL SL +    + D G+K I  L
Sbjct: 316 MKQLTSLDIGYNSIDSKGAKSVRKLKNLTSLNVRSNMIDDEGLKAIGQL 364


>gi|297742329|emb|CBI34478.3| unnamed protein product [Vitis vinifera]
          Length = 588

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 126/464 (27%), Positives = 214/464 (46%), Gaps = 49/464 (10%)

Query: 2   LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
           +P  +++ + + L+  R L    LE F+  +++ + L     V+ +WM  I      L S
Sbjct: 40  MPSHLAEALLHRLIRRRILNPSLLEVFK-FSVEKIDLRGESSVDAEWMAYIGG-FCCLCS 97

Query: 62  VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           ++++    +T+S L  +    NL+ LD + CI+ SD GL HL  +  L  L       +T
Sbjct: 98  LNIADCQRITNSALWPIIGMPNLKELDLSRCIKFSDSGLRHLISIRTLQKLCISET-GVT 156

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           A G+   + L NL  LDL         L +L+ L KL+ L++ W + I++     L    
Sbjct: 157 ADGINLVSSLTNLSVLDLGGLPVTDLVLSSLQVLTKLQYLDL-WGSKISNKGAADLVVFP 215

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV--------TAACLDSLSALGSLF- 231
            L  L I+ + VT      L  L  +  LN+  C +          A L+ ++  G+ F 
Sbjct: 216 KLSFLNIAWTDVTT-----LPDLPSIACLNMSNCTIHSMFEGEGAKALLEKITVSGATFL 270

Query: 232 ---------------YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL- 275
                          +L+++R  L +  C   S + +L+ L+L F  + D+ +  +  + 
Sbjct: 271 NVSEAFLFIETSFLSFLDVSRSSL-NSFC-FLSCMKALEHLDLSFTMMGDDSIQLIACIG 328

Query: 276 TNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
            NL +LNL +  +   G+  L G + NL+ + LS T V    + ++S +++++ INLS T
Sbjct: 329 ANLRNLNLSNTRVSSAGVSILAGCVPNLETISLSHTPVDDVAISYISMMSSVKIINLSNT 388

Query: 335 GI-----SDG------SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
            +     SD       SL  L  L+ +K L+L+  Q+ D  L  L     L  L L G R
Sbjct: 389 NVKGLIWSDSELVWELSLAALHSLNYVKRLDLEGTQVEDEALCPLLRFQQLNELSLKGTR 448

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
           +TD     L +  NL +L I    LT+ G+   K  ++L LL+L
Sbjct: 449 LTDLSLYQLSSLPNLINLSIGDTVLTNGGLNSFKPPATLKLLDL 492



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 174/406 (42%), Gaps = 91/406 (22%)

Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWC 165
           ++  +  R  +++ A+ M    G   L  L++  C RI +  L  + G+  L+ L++  C
Sbjct: 69  SVEKIDLRGESSVDAEWMAYIGGFCCLCSLNIADCQRITNSALWPIIGMPNLKELDLSRC 128

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
              +DS ++ L  +  L+ L IS + VT  GI  +  L  L++L+L G PVT   L SL 
Sbjct: 129 IKFSDSGLRHLISIRTLQKLCISETGVTADGINLVSSLTNLSVLDLGGLPVTDLVLSSLQ 188

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            L  L YL+L   ++S+ G         L  LN+ + ++T      L  L ++  LN+ +
Sbjct: 189 VLTKLQYLDLWGSKISNKGAADLVVFPKLSFLNIAWTDVTT-----LPDLPSIACLNMSN 243

Query: 286 CGI-------GDEGLV---------------------------------NLTGLCNLKC- 304
           C I       G + L+                                 +L   C L C 
Sbjct: 244 CTIHSMFEGEGAKALLEKITVSGATFLNVSEAFLFIETSFLSFLDVSRSSLNSFCFLSCM 303

Query: 305 -----LELSDTQVG-------------------------SSGLRHLSG-LTNLESINLSF 333
                L+LS T +G                         S+G+  L+G + NLE+I+LS 
Sbjct: 304 KALEHLDLSFTMMGDDSIQLIACIGANLRNLNLSNTRVSSAGVSILAGCVPNLETISLSH 363

Query: 334 TGISDGSLRKLAGLSSLKSLNL-----------DARQITDTGLAALTSLTGLTHLDLFGA 382
           T + D ++  ++ +SS+K +NL           D+  + +  LAAL SL  +  LDL G 
Sbjct: 364 TPVDDVAISYISMMSSVKIINLSNTNVKGLIWSDSELVWELSLAALHSLNYVKRLDLEGT 423

Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
           ++ D     L  F+ L  L + G  LTD  +  +  L +  L+NLS
Sbjct: 424 QVEDEALCPLLRFQQLNELSLKGTRLTDLSLYQLSSLPN--LINLS 467



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 98/176 (55%), Gaps = 8/176 (4%)

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGL 317
           G + +  E + ++ G   L SLN+  C  I +  L  + G+ NLK L+LS   +   SGL
Sbjct: 77  GESSVDAEWMAYIGGFCCLCSLNIADCQRITNSALWPIIGMPNLKELDLSRCIKFSDSGL 136

Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
           RHL  +  L+ + +S TG++   +  ++ L++L  L+L    +TD  L++L  LT L +L
Sbjct: 137 RHLISIRTLQKLCISETGVTADGINLVSSLTNLSVLDLGGLPVTDLVLSSLQVLTKLQYL 196

Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
           DL+G++I++ GAA L  F  L  L I     TD  V  + DL S+  LN+S NC +
Sbjct: 197 DLWGSKISNKGAADLVVFPKLSFLNI---AWTD--VTTLPDLPSIACLNMS-NCTI 246


>gi|225426352|ref|XP_002266070.1| PREDICTED: uncharacterized protein LOC100261612 [Vitis vinifera]
          Length = 598

 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 126/464 (27%), Positives = 214/464 (46%), Gaps = 49/464 (10%)

Query: 2   LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
           +P  +++ + + L+  R L    LE F+  +++ + L     V+ +WM  I      L S
Sbjct: 40  MPSHLAEALLHRLIRRRILNPSLLEVFK-FSVEKIDLRGESSVDAEWMAYIGG-FCCLCS 97

Query: 62  VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           ++++    +T+S L  +    NL+ LD + CI+ SD GL HL  +  L  L       +T
Sbjct: 98  LNIADCQRITNSALWPIIGMPNLKELDLSRCIKFSDSGLRHLISIRTLQKLCISET-GVT 156

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           A G+   + L NL  LDL         L +L+ L KL+ L++ W + I++     L    
Sbjct: 157 ADGINLVSSLTNLSVLDLGGLPVTDLVLSSLQVLTKLQYLDL-WGSKISNKGAADLVVFP 215

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV--------TAACLDSLSALGSLF- 231
            L  L I+ + VT      L  L  +  LN+  C +          A L+ ++  G+ F 
Sbjct: 216 KLSFLNIAWTDVTT-----LPDLPSIACLNMSNCTIHSMFEGEGAKALLEKITVSGATFL 270

Query: 232 ---------------YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL- 275
                          +L+++R  L +  C   S + +L+ L+L F  + D+ +  +  + 
Sbjct: 271 NVSEAFLFIETSFLSFLDVSRSSL-NSFC-FLSCMKALEHLDLSFTMMGDDSIQLIACIG 328

Query: 276 TNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
            NL +LNL +  +   G+  L G + NL+ + LS T V    + ++S +++++ INLS T
Sbjct: 329 ANLRNLNLSNTRVSSAGVSILAGCVPNLETISLSHTPVDDVAISYISMMSSVKIINLSNT 388

Query: 335 GI-----SDG------SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
            +     SD       SL  L  L+ +K L+L+  Q+ D  L  L     L  L L G R
Sbjct: 389 NVKGLIWSDSELVWELSLAALHSLNYVKRLDLEGTQVEDEALCPLLRFQQLNELSLKGTR 448

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
           +TD     L +  NL +L I    LT+ G+   K  ++L LL+L
Sbjct: 449 LTDLSLYQLSSLPNLINLSIGDTVLTNGGLNSFKPPATLKLLDL 492



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 174/406 (42%), Gaps = 91/406 (22%)

Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWC 165
           ++  +  R  +++ A+ M    G   L  L++  C RI +  L  + G+  L+ L++  C
Sbjct: 69  SVEKIDLRGESSVDAEWMAYIGGFCCLCSLNIADCQRITNSALWPIIGMPNLKELDLSRC 128

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
              +DS ++ L  +  L+ L IS + VT  GI  +  L  L++L+L G PVT   L SL 
Sbjct: 129 IKFSDSGLRHLISIRTLQKLCISETGVTADGINLVSSLTNLSVLDLGGLPVTDLVLSSLQ 188

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            L  L YL+L   ++S+ G         L  LN+ + ++T      L  L ++  LN+ +
Sbjct: 189 VLTKLQYLDLWGSKISNKGAADLVVFPKLSFLNIAWTDVTT-----LPDLPSIACLNMSN 243

Query: 286 CGI-------GDEGLV---------------------------------NLTGLCNLKC- 304
           C I       G + L+                                 +L   C L C 
Sbjct: 244 CTIHSMFEGEGAKALLEKITVSGATFLNVSEAFLFIETSFLSFLDVSRSSLNSFCFLSCM 303

Query: 305 -----LELSDTQVG-------------------------SSGLRHLSG-LTNLESINLSF 333
                L+LS T +G                         S+G+  L+G + NLE+I+LS 
Sbjct: 304 KALEHLDLSFTMMGDDSIQLIACIGANLRNLNLSNTRVSSAGVSILAGCVPNLETISLSH 363

Query: 334 TGISDGSLRKLAGLSSLKSLNL-----------DARQITDTGLAALTSLTGLTHLDLFGA 382
           T + D ++  ++ +SS+K +NL           D+  + +  LAAL SL  +  LDL G 
Sbjct: 364 TPVDDVAISYISMMSSVKIINLSNTNVKGLIWSDSELVWELSLAALHSLNYVKRLDLEGT 423

Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
           ++ D     L  F+ L  L + G  LTD  +  +  L +  L+NLS
Sbjct: 424 QVEDEALCPLLRFQQLNELSLKGTRLTDLSLYQLSSLPN--LINLS 467



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 98/176 (55%), Gaps = 8/176 (4%)

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGL 317
           G + +  E + ++ G   L SLN+  C  I +  L  + G+ NLK L+LS   +   SGL
Sbjct: 77  GESSVDAEWMAYIGGFCCLCSLNIADCQRITNSALWPIIGMPNLKELDLSRCIKFSDSGL 136

Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
           RHL  +  L+ + +S TG++   +  ++ L++L  L+L    +TD  L++L  LT L +L
Sbjct: 137 RHLISIRTLQKLCISETGVTADGINLVSSLTNLSVLDLGGLPVTDLVLSSLQVLTKLQYL 196

Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
           DL+G++I++ GAA L  F  L  L I     TD  V  + DL S+  LN+S NC +
Sbjct: 197 DLWGSKISNKGAADLVVFPKLSFLNI---AWTD--VTTLPDLPSIACLNMS-NCTI 246


>gi|329905907|ref|ZP_08274287.1| hypothetical protein IMCC9480_2692 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547418|gb|EGF32242.1| hypothetical protein IMCC9480_2692 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 552

 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 144/485 (29%), Positives = 215/485 (44%), Gaps = 111/485 (22%)

Query: 67  SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
           S +TD+GL  L   + L+ LD   C  I D GL HL  +++LT L+ R+   IT  G++ 
Sbjct: 47  SKLTDAGLASLAPLTALKQLDLGHCTGIGDTGLAHLGNMASLTQLNVRQCTNITDAGLEQ 106

Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGL-----------------------MKLESLNI 162
            A L  L +L+L  C RI   G+ +LK L                        +L  LN+
Sbjct: 107 LANLPRLARLNLAGCHRITAAGIAHLKKLPLTYLDLSGCSGISNAAIAHLKAHQLTELNL 166

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLK-------------------- 201
             C    D     L+ +  L++L +S C+  T+SG+ +L                     
Sbjct: 167 SDCTGFGDEGFAHLAEVP-LQTLDLSGCTGFTNSGLRFLNKSTLTRLSLRNCTQLDFGAT 225

Query: 202 ----GLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLK 255
               G Q L  L+L GC  +    L +L  L  L +L+L R   L+D G E  +++ SL+
Sbjct: 226 FRLYGAQSLRHLDLAGCEGLDNTALTALQDL-PLEHLDLARNTFLNDTGLESLAEMTSLR 284

Query: 256 VLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQV 312
            LNL G  ++TD  L HL  L  L+ L L++C    D GL  L+ L  L+ LEL D   +
Sbjct: 285 YLNLSGGADMTDAALAHLAELPALQHLILNNCRRTTDAGLAQLSHL-PLETLELVDCVAL 343

Query: 313 GSSGLRHLSGLT-NLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL- 368
            ++ L  L G    L+ ++LS  T +SD  L  LA +++L+ L+L   R  TD G  AL 
Sbjct: 344 TNTALARLPGAAATLQKLDLSGCTALSDAGLAHLADITTLRKLDLSWNRNFTDAGAVALR 403

Query: 369 --------------------TSLTG--------------------------LTHLDLFGA 382
                               T+L+G                          L   DL   
Sbjct: 404 ELPLGQLRLNGWIGLTDQGMTALSGMPLQSLGLIGCDNIDGSGLAQLNSRCLQKFDLSHC 463

Query: 383 RI-TDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
           R+  D    YLR    L+ L++   G +TDAG+ H+  L  LT L+L+ N  +TD+ L+ 
Sbjct: 464 RLLNDDAMIYLRRLP-LKELDLSWCGAITDAGLAHLTGLQ-LTRLDLTYNSGVTDEGLKN 521

Query: 441 ISGLT 445
           +SG+ 
Sbjct: 522 LSGMP 526



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 121/371 (32%), Positives = 189/371 (50%), Gaps = 49/371 (13%)

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIK 163
           + +LT+L+   N+ +T  G+ + A L  L +LDL  CT I   GL +L  +  L  LN++
Sbjct: 35  IRHLTNLNLSNNSKLTDAGLASLAPLTALKQLDLGHCTGIGDTGLAHLGNMASLTQLNVR 94

Query: 164 WCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACL 221
            C  ITD+ ++ L+ L  L  L ++ C ++T +GIA+LK L  LT L+L GC  ++ A +
Sbjct: 95  QCTNITDAGLEQLANLPRLARLNLAGCHRITAAGIAHLKKL-PLTYLDLSGCSGISNAAI 153

Query: 222 DSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL----GF--------------- 261
             L A   L  LNL+ C    D+G    +++  L+ L+L    GF               
Sbjct: 154 AHLKA-HQLTELNLSDCTGFGDEGFAHLAEV-PLQTLDLSGCTGFTNSGLRFLNKSTLTR 211

Query: 262 ------NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS------D 309
                  ++       L G  +L  L+L  C    EGL N T L  L+ L L       +
Sbjct: 212 LSLRNCTQLDFGATFRLYGAQSLRHLDLAGC----EGLDN-TALTALQDLPLEHLDLARN 266

Query: 310 TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAA 367
           T +  +GL  L+ +T+L  +NLS    ++D +L  LA L +L+ L L + R+ TD GLA 
Sbjct: 267 TFLNDTGLESLAEMTSLRYLNLSGGADMTDAALAHLAELPALQHLILNNCRRTTDAGLAQ 326

Query: 368 LTSLTGLTHLDLFG-ARITDSGAAYLRN-FKNLRSLEICG-GGLTDAGVKHIKDLSSLTL 424
           L+ L  L  L+L     +T++  A L      L+ L++ G   L+DAG+ H+ D+++L  
Sbjct: 327 LSHLP-LETLELVDCVALTNTALARLPGAAATLQKLDLSGCTALSDAGLAHLADITTLRK 385

Query: 425 LNLSQNCNLTD 435
           L+LS N N TD
Sbjct: 386 LDLSWNRNFTD 396



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 101/223 (45%), Gaps = 42/223 (18%)

Query: 20  LTEVSLEAFR--DC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLI 75
           L+ + LE     DC AL +  L + PG             ++L  +DLSG + ++D+GL 
Sbjct: 327 LSHLPLETLELVDCVALTNTALARLPGA-----------AATLQKLDLSGCTALSDAGLA 375

Query: 76  HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL----- 130
           HL D + L+ LD ++    +D G   LR L  L  L       +T QGM A +G+     
Sbjct: 376 HLADITTLRKLDLSWNRNFTDAGAVALRELP-LGQLRLNGWIGLTDQGMTALSGMPLQSL 434

Query: 131 ---------------IN---LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
                          +N   L K DL  C  ++   +     + L+ L++ WC  ITD+ 
Sbjct: 435 GLIGCDNIDGSGLAQLNSRCLQKFDLSHCRLLNDDAMIYLRRLPLKELDLSWCGAITDAG 494

Query: 173 MKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGC 214
           +  L+GL  L  L ++  S VTD G+  L G+  L  L + GC
Sbjct: 495 LAHLTGL-QLTRLDLTYNSGVTDEGLKNLSGM-PLQQLRVLGC 535



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 135/327 (41%), Gaps = 66/327 (20%)

Query: 56  GSSLLSVDLS-------------------------------------------------- 65
             SL  +DL+                                                  
Sbjct: 231 AQSLRHLDLAGCEGLDNTALTALQDLPLEHLDLARNTFLNDTGLESLAEMTSLRYLNLSG 290

Query: 66  GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
           G+D+TD+ L HL +   LQ L  N C + +D GL  L  L  L +L      A+T   + 
Sbjct: 291 GADMTDAALAHLAELPALQHLILNNCRRTTDAGLAQLSHLP-LETLELVDCVALTNTALA 349

Query: 126 AFAG-LINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
              G    L KLDL  CT +   GL +L  +  L  L++ W    TD+    L  L  L 
Sbjct: 350 RLPGAAATLQKLDLSGCTALSDAGLAHLADITTLRKLDLSWNRNFTDAGAVALRELP-LG 408

Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
            L+++    +TD G+  L G+  L  L L GC  +  + L  L++   L   +L+ C+L 
Sbjct: 409 QLRLNGWIGLTDQGMTALSGM-PLQSLGLIGCDNIDGSGLAQLNS-RCLQKFDLSHCRLL 466

Query: 242 DDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLD-SCGIGDEGLVNLTGL 299
           +D    + +   LK L+L +   ITD  L HL GL  L  L+L  + G+ DEGL NL+G+
Sbjct: 467 NDDAMIYLRRLPLKELDLSWCGAITDAGLAHLTGL-QLTRLDLTYNSGVTDEGLKNLSGM 525

Query: 300 C-----NLKCLELSDTQVGSSGLRHLS 321
                  L C +++     ++GL  L 
Sbjct: 526 PLQQLRVLGCHQVTPNGFWAAGLERLQ 552


>gi|300691655|ref|YP_003752650.1| type III effector protein [Ralstonia solanacearum PSI07]
 gi|299078715|emb|CBJ51374.1| leucine-rich-repeat type III effector protein (GALA6) [Ralstonia
           solanacearum PSI07]
          Length = 608

 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 151/484 (31%), Positives = 216/484 (44%), Gaps = 32/484 (6%)

Query: 2   LPRDISQQIFNEL--VYSRCLTEVSLEAFRDCA--------LQDLC----LGQYPGVNDK 47
           LP ++ Q+I +       R +  VS E  RD +        ++D      LG YP +   
Sbjct: 87  LPPELWQRIASSAGARPRRAMRAVSRE-LRDASRAVVTHLTIRDPAVLRHLGNYPALKSL 145

Query: 48  WM------DVIASQGSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG 98
            +      D + +    L  +DLS   GS ++ +GL HL     L+SL     I+I   G
Sbjct: 146 RLKGALTLDALKALPPGLEHLDLSRCTGSAMSSAGLAHLA-ARPLKSLCM-IGIEIGVEG 203

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKL 157
            + L   ++L SLS      I  +  +A A   ++  LDL    RI   G   L G   L
Sbjct: 204 AQRLAASTSLASLSLI-GCEIGDRAAEALAASQSIKSLDLS-ANRIGRDGARALAG-APL 260

Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
            SLN+ + N I D   + L+    L SL +S + + D+G   L     LT LNL+G  + 
Sbjct: 261 VSLNL-YSNAIGDEGARALATSRTLTSLNLSSNGIDDAGAGALADNTLLTQLNLQGNRIG 319

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
                +L+   SL  L+L   +L D G    +   SL  L++  NEI D+    L     
Sbjct: 320 RGGAQALANSTSLTDLDLGNNRLGDRGARALAGSKSLTSLSVRGNEIGDKGAKALARNAT 379

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           L+SLNL    I   G+  L G   L  L+L    + SSG   L+   +L S+ L    I 
Sbjct: 380 LKSLNLSYNLISLRGVRALGGSATLSVLDLCACDIDSSGASALARNASLASLYLGSNRIG 439

Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
           D   R LA  S+L  L L    I  TG  AL     L  LDL G  I D GAA L     
Sbjct: 440 DRGARALAKNSTLTRLALSGNGIHTTGAQALAGNDSLISLDLGGNEIDDDGAAALARHPR 499

Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
           L SL++ G  +  AG + +   ++L  L+LS N  +  +  E +S  T L +LNVS++ I
Sbjct: 500 LISLDLRGNRIRSAGAQQLAKSATLAELDLSAN-RIGAEGAEALSRSTVLTTLNVSDNAI 558

Query: 458 TSAG 461
             AG
Sbjct: 559 GDAG 562



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 115/391 (29%), Positives = 170/391 (43%), Gaps = 32/391 (8%)

Query: 102 LRGLSNLTSL-SFRRNNAITAQGMKAFAGLINLVKLDLERCT---RIHGGLVNL------ 151
           LR L N  +L S R   A+T   +KA      L  LDL RCT       GL +L      
Sbjct: 133 LRHLGNYPALKSLRLKGALTLDALKALP--PGLEHLDLSRCTGSAMSSAGLAHLAARPLK 190

Query: 152 -----------KGLMKLE------SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
                      +G  +L       SL++  C  I D   + L+   ++KSL +S +++  
Sbjct: 191 SLCMIGIEIGVEGAQRLAASTSLASLSLIGCE-IGDRAAEALAASQSIKSLDLSANRIGR 249

Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
            G   L G   L  LNL    +      +L+   +L  LNL+   + D G    +    L
Sbjct: 250 DGARALAG-APLVSLNLYSNAIGDEGARALATSRTLTSLNLSSNGIDDAGAGALADNTLL 308

Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
             LNL  N I       L   T+L  L+L +  +GD G   L G  +L  L +   ++G 
Sbjct: 309 TQLNLQGNRIGRGGAQALANSTSLTDLDLGNNRLGDRGARALAGSKSLTSLSVRGNEIGD 368

Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
            G + L+    L+S+NLS+  IS   +R L G ++L  L+L A  I  +G +AL     L
Sbjct: 369 KGAKALARNATLKSLNLSYNLISLRGVRALGGSATLSVLDLCACDIDSSGASALARNASL 428

Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
             L L   RI D GA  L     L  L + G G+   G + +    SL  L+L  N  + 
Sbjct: 429 ASLYLGSNRIGDRGARALAKNSTLTRLALSGNGIHTTGAQALAGNDSLISLDLGGN-EID 487

Query: 435 DKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           D     ++    L+SL++  +RI SAG + L
Sbjct: 488 DDGAAALARHPRLISLDLRGNRIRSAGAQQL 518



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 110/391 (28%), Positives = 171/391 (43%), Gaps = 9/391 (2%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
           + D+  + +A+   S+ S+DLS + +   G   L     L SL+  +   I D G   L 
Sbjct: 223 IGDRAAEALAAS-QSIKSLDLSANRIGRDGARALAGAP-LVSLNL-YSNAIGDEGARALA 279

Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNI 162
               LTSL+   +N I   G  A A    L +L+L+   RI  GG   L     L  L++
Sbjct: 280 TSRTLTSLNLS-SNGIDDAGAGALADNTLLTQLNLQ-GNRIGRGGAQALANSTSLTDLDL 337

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
              N + D   + L+G  +L SL +  +++ D G   L     L  LNL    ++   + 
Sbjct: 338 -GNNRLGDRGARALAGSKSLTSLSVRGNEIGDKGAKALARNATLKSLNLSYNLISLRGVR 396

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
           +L    +L  L+L  C +   G    ++  SL  L LG N I D     L   + L  L 
Sbjct: 397 ALGGSATLSVLDLCACDIDSSGASALARNASLASLYLGSNRIGDRGARALAKNSTLTRLA 456

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
           L   GI   G   L G  +L  L+L   ++   G   L+    L S++L    I     +
Sbjct: 457 LSGNGIHTTGAQALAGNDSLISLDLGGNEIDDDGAAALARHPRLISLDLRGNRIRSAGAQ 516

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
           +LA  ++L  L+L A +I   G  AL+  T LT L++    I D+GA  L    +L SL+
Sbjct: 517 QLAKSATLAELDLSANRIGAEGAEALSRSTVLTTLNVSDNAIGDAGALALAKSTSLISLD 576

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
               G+ + G + ++  + LT     QN N 
Sbjct: 577 ARRSGIGEVGARALEANTRLT--GTPQNPNF 605


>gi|290977929|ref|XP_002671689.1| LRR_RI domain-containing protein [Naegleria gruberi]
 gi|284085260|gb|EFC38945.1| LRR_RI domain-containing protein [Naegleria gruberi]
          Length = 434

 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 143/290 (49%), Gaps = 26/290 (8%)

Query: 179 LTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
             NLK L+I    +  D G   +  ++ LT LN+  C +T+   + +  L  L YLN+  
Sbjct: 117 FPNLKRLEIGDNQQFGDCGAESISKIKTLTSLNVLDCGITSKGAEFIGLLNGLTYLNIGN 176

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
            ++ D G +   K+ SL VL +G  EIT E    +  +  L SL++ S  +  E   +++
Sbjct: 177 NKIMDSGMKFIGKLSSLNVLQIGSTEITSESFKLVGCMKGLTSLSIYSNPVTIEDAKSIS 236

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
            +  LK L +S+T +   GL++LS LT                         L +L+L  
Sbjct: 237 SIHGLKSLNISNTGISVEGLKYLSALT------------------------LLTNLSLAK 272

Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
             IT+ GL +++ +  +T L L    I   GA  L    NLR L I    +T  G+KHI 
Sbjct: 273 NNITNEGLLSISQMKQITKLFLQHNVIDCDGAQLLSTMTNLRLLNISQTKITTEGIKHIT 332

Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNH 467
            L ++T LN+S N  L D+ L+L+S +  L +L+  N+++TS G +H++ 
Sbjct: 333 SLKNITSLNISIN-QLNDEALKLVSSMNQLTNLSTHNNKLTSEGAKHISQ 381



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 142/285 (49%), Gaps = 2/285 (0%)

Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
           G  ++  +  L SLN+  C  IT    + +  L  L  L I  +K+ DSG+ ++  L  L
Sbjct: 135 GAESISKIKTLTSLNVLDCG-ITSKGAEFIGLLNGLTYLNIGNNKIMDSGMKFIGKLSSL 193

Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
            +L +    +T+     +  +  L  L++    ++ +  +  S I  LK LN+    I+ 
Sbjct: 194 NVLQIGSTEITSESFKLVGCMKGLTSLSIYSNPVTIEDAKSISSIHGLKSLNISNTGISV 253

Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
           E L +L  LT L +L+L    I +EGL++++ +  +  L L    +   G + LS +TNL
Sbjct: 254 EGLKYLSALTLLTNLSLAKNNITNEGLLSISQMKQITKLFLQHNVIDCDGAQLLSTMTNL 313

Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
             +N+S T I+   ++ +  L ++ SLN+   Q+ D  L  ++S+  LT+L     ++T 
Sbjct: 314 RLLNISQTKITTEGIKHITSLKNITSLNISINQLNDEALKLVSSMNQLTNLSTHNNKLTS 373

Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
            GA ++    NL  L I    +   G  ++  +++L ++N+S NC
Sbjct: 374 EGAKHISQLNNLTELNISSNPVRIEGANYLNQMTTLKIINVS-NC 417



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 112/452 (24%), Positives = 188/452 (41%), Gaps = 98/452 (21%)

Query: 1   MLPRDISQQIFNELVYSRCLTE---VSLEAF-----RDCALQDLCLGQYPGVNDKWMDVI 52
           + P DI ++I   L +   L     +S + F     R  A   L  GQ       W+  I
Sbjct: 24  LFPDDICEEIMQWLAWKEVLLNCCLISKQWFTIAKSRYRASIQLTYGQ----EKLWLCFI 79

Query: 53  ASQGSSL-----LSVD---LSGSDVTDS--GLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
             Q   +     + VD   + GS   DS    I  K   NL+ L+     Q  D G E +
Sbjct: 80  KEQQEGISRIFNIGVDSFRVVGSYFIDSINAEIISKSFPNLKRLEIGDNQQFGDCGAESI 139

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
             +  LTSL+   +  IT++G + F GL+N                    GL  L   N 
Sbjct: 140 SKIKTLTSLNVL-DCGITSKGAE-FIGLLN--------------------GLTYLNIGN- 176

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
              N I DS MK +  L++L  LQI  +++T      +  ++ LT L++   PVT     
Sbjct: 177 ---NKIMDSGMKFIGKLSSLNVLQIGSTEITSESFKLVGCMKGLTSLSIYSNPVTIEDAK 233

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH----------- 271
           S+S++  L  LN++   +S +G +  S +  L  L+L  N IT+E L+            
Sbjct: 234 SISSIHGLKSLNISNTGISVEGLKYLSALTLLTNLSLAKNNITNEGLLSISQMKQITKLF 293

Query: 272 -------------LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
                        L  +TNL  LN                        +S T++ + G++
Sbjct: 294 LQHNVIDCDGAQLLSTMTNLRLLN------------------------ISQTKITTEGIK 329

Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
           H++ L N+ S+N+S   ++D +L+ ++ ++ L +L+    ++T  G   ++ L  LT L+
Sbjct: 330 HITSLKNITSLNISINQLNDEALKLVSSMNQLTNLSTHNNKLTSEGAKHISQLNNLTELN 389

Query: 379 LFGARITDSGAAYLRNFKNLRSLEI--CGGGL 408
           +    +   GA YL     L+ + +  C  G+
Sbjct: 390 ISSNPVRIEGANYLNQMTTLKIINVSNCRTGI 421


>gi|168700559|ref|ZP_02732836.1| hypothetical protein GobsU_13597 [Gemmata obscuriglobus UQM 2246]
          Length = 446

 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 166/367 (45%), Gaps = 31/367 (8%)

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           +T  G  A  G +    + +ER   +   L  LKGL  +  +     + +TD+D+  ++G
Sbjct: 70  VTVHGPGADGGCV----VRVERTADLAPALATLKGLKCVTEVTFA-SDRLTDTDLACIAG 124

Query: 179 LTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
             +L+S  +  C +VT +G   L  L +L  ++L G PVT      L  + +L  + L R
Sbjct: 125 FEHLRSFGLRDCGRVTGAGFGVLAQLPRLKWVSLVG-PVTDEAGPHLGRIKTLETVVLYR 183

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-----------------------LKG 274
            + +D G ++ + + +L  +N+    +T                             +  
Sbjct: 184 TKFTDAGLKELAALPALGSVNVTATPVTGTAFAEPGWSRLREIDATQTAFNAAGLEAVSA 243

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           L  L +L LD+  + D GL +L     L+ L L+DT V  +G+  L+G+  L  +NL  T
Sbjct: 244 LPVLGTLTLDATAVTDSGLKHLARARALQELSLADTPVADTGVAALAGVQTLRVLNLERT 303

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
           G++  +       + L+ LNL   + TD   + L  L  LT+L L G  +TD+G A L +
Sbjct: 304 GVTGAAFATFPVPAELRKLNLAETRFTDASGSHLARLPALTNLSLSGCDVTDAGLARLAD 363

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
            K L +L++ G    D   +    L+ L +++  +   LTD  L+  +    L  L V  
Sbjct: 364 LKKLANLDLTGTKAGDGAAEVAGTLAELEVVSF-RGTQLTDAGLKAAAHGARLRFLYVRG 422

Query: 455 SRITSAG 461
           S++T  G
Sbjct: 423 SKVTKRG 429



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 141/320 (44%), Gaps = 11/320 (3%)

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKL 157
           L  L+GL  +T ++F  ++ +T   +   AG  +L    L  C R+ G G   L  L +L
Sbjct: 95  LATLKGLKCVTEVTFA-SDRLTDTDLACIAGFEHLRSFGLRDCGRVTGAGFGVLAQLPRL 153

Query: 158 ESLNIKWCN---CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
                KW +    +TD     L  +  L+++ +  +K TD+G+  L  L  L  +N+   
Sbjct: 154 -----KWVSLVGPVTDEAGPHLGRIKTLETVVLYRTKFTDAGLKELAALPALGSVNVTAT 208

Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
           PVT     +      L  ++  +   +  G E  S +  L  L L    +TD  L HL  
Sbjct: 209 PVTGTAF-AEPGWSRLREIDATQTAFNAAGLEAVSALPVLGTLTLDATAVTDSGLKHLAR 267

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
              L+ L+L    + D G+  L G+  L+ L L  T V  +          L  +NL+ T
Sbjct: 268 ARALQELSLADTPVADTGVAALAGVQTLRVLNLERTGVTGAAFATFPVPAELRKLNLAET 327

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
             +D S   LA L +L +L+L    +TD GLA L  L  L +LDL G +  D  A     
Sbjct: 328 RFTDASGSHLARLPALTNLSLSGCDVTDAGLARLADLKKLANLDLTGTKAGDGAAEVAGT 387

Query: 395 FKNLRSLEICGGGLTDAGVK 414
              L  +   G  LTDAG+K
Sbjct: 388 LAELEVVSFRGTQLTDAGLK 407



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 126/300 (42%), Gaps = 15/300 (5%)

Query: 77  LKDCSNLQSLDFNFCIQ------------ISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
           L+DC  +    F    Q            ++D    HL  +  L ++   R    T  G+
Sbjct: 133 LRDCGRVTGAGFGVLAQLPRLKWVSLVGPVTDEAGPHLGRIKTLETVVLYRTK-FTDAGL 191

Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           K  A L  L  +++   T + G      G  +L  ++         + ++ +S L  L +
Sbjct: 192 KELAALPALGSVNVT-ATPVTGTAFAEPGWSRLREIDATQ-TAFNAAGLEAVSALPVLGT 249

Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
           L +  + VTDSG+ +L   + L  L+L   PV    + +L+ + +L  LNL R  ++   
Sbjct: 250 LTLDATAVTDSGLKHLARARALQELSLADTPVADTGVAALAGVQTLRVLNLERTGVTGAA 309

Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
              F     L+ LNL     TD    HL  L  L +L+L  C + D GL  L  L  L  
Sbjct: 310 FATFPVPAELRKLNLAETRFTDASGSHLARLPALTNLSLSGCDVTDAGLARLADLKKLAN 369

Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
           L+L+ T+ G         L  LE ++   T ++D  L+  A  + L+ L +   ++T  G
Sbjct: 370 LDLTGTKAGDGAAEVAGTLAELEVVSFRGTQLTDAGLKAAAHGARLRFLYVRGSKVTKRG 429



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 80/207 (38%), Gaps = 27/207 (13%)

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
           L  + VTDSGL HL     LQ L                             +  +   G
Sbjct: 252 LDATAVTDSGLKHLARARALQELSLA--------------------------DTPVADTG 285

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
           + A AG+  L  L+LER               +L  LN+      TD+    L+ L  L 
Sbjct: 286 VAALAGVQTLRVLNLERTGVTGAAFATFPVPAELRKLNLAETR-FTDASGSHLARLPALT 344

Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
           +L +S   VTD+G+A L  L+KL  L+L G        +    L  L  ++    QL+D 
Sbjct: 345 NLSLSGCDVTDAGLARLADLKKLANLDLTGTKAGDGAAEVAGTLAELEVVSFRGTQLTDA 404

Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLV 270
           G +  +    L+ L +  +++T    V
Sbjct: 405 GLKAAAHGARLRFLYVRGSKVTKRGAV 431



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 24/179 (13%)

Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLT 372
           +  L  L GL  +  +  +   ++D  L  +AG   L+S  L D  ++T  G   L  L 
Sbjct: 92  APALATLKGLKCVTEVTFASDRLTDTDLACIAGFEHLRSFGLRDCGRVTGAGFGVLAQLP 151

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC- 431
            L  + L G  +TD    +L   K L ++ +     TDAG+K +  L +L  +N++    
Sbjct: 152 RLKWVSLVGP-VTDEAGPHLGRIKTLETVVLYRTKFTDAGLKELAALPALGSVNVTATPV 210

Query: 432 -------------NLTDKT--------LELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
                           D T        LE +S L  L +L +  + +T +GL+HL  AR
Sbjct: 211 TGTAFAEPGWSRLREIDATQTAFNAAGLEAVSALPVLGTLTLDATAVTDSGLKHLARAR 269



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 8/114 (7%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
            +L ++ LSG DVTD+GL  L D   L +LD     +  DG  E    L+ L  +SF R 
Sbjct: 341 PALTNLSLSGCDVTDAGLARLADLKKLANLDLT-GTKAGDGAAEVAGTLAELEVVSF-RG 398

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
             +T  G+KA A    L      R   + G  V  +G +    +  + C  + +
Sbjct: 399 TQLTDAGLKAAAHGARL------RFLYVRGSKVTKRGAVDAGKVVREGCRIVAE 446


>gi|290993192|ref|XP_002679217.1| predicted protein [Naegleria gruberi]
 gi|284092833|gb|EFC46473.1| predicted protein [Naegleria gruberi]
          Length = 310

 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 140/269 (52%), Gaps = 2/269 (0%)

Query: 174 KPLSGLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           K +  L NLK L +S +  + +  +  +  L++L  LN+  C +    +  L+ L  L  
Sbjct: 30  KCICQLKNLKKLDVSYNYHLENEVVELISELRELRELNIRYCDIGVEEVKYLTKLDKLHS 89

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           L++   Q+  DG +  S + SL  L++   EI DE    +  L  L  LN++  GIG  G
Sbjct: 90  LDIGINQIYADGAKLLSTMKSLTKLDVAECEIGDEGCQSITELYQLTDLNINGDGIGVGG 149

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
              +  + NLK L++S+   G+ G + +S L+ LE +N+S++ I +  + +L  L +L S
Sbjct: 150 ANCIGQMRNLKSLDISNNFFGNYGAKSISELSQLEILNVSYSDIDEVGVYQLRKLKNLTS 209

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
           L++   +ITD G   +  L  LTHLD+   +I   GA  +     L SL I    + D G
Sbjct: 210 LSIHHNEITDEGTKYIVELDQLTHLDISNNQIETEGAKSISEMSQLTSLNISSNIIGDEG 269

Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
            ++I  L  LT LN+S+ C ++++ +E I
Sbjct: 270 AQYISHLKKLTSLNVSK-CRVSEEGVESI 297



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 147/302 (48%), Gaps = 4/302 (1%)

Query: 105 LSNLTSLSFR-RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNI 162
           LSN    ++  +N+ IT +  K    L NL KLD+     +   +V L   L +L  LNI
Sbjct: 9   LSNFIFATYAGKNSEITVELAKCICQLKNLKKLDVSYNYHLENEVVELISELRELRELNI 68

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
           ++C+ I   ++K L+ L  L SL I  +++   G   L  ++ LT L++  C +      
Sbjct: 69  RYCD-IGVEEVKYLTKLDKLHSLDIGINQIYADGAKLLSTMKSLTKLDVAECEIGDEGCQ 127

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
           S++ L  L  LN+N   +   G     ++ +LK L++  N   +     +  L+ LE LN
Sbjct: 128 SITELYQLTDLNINGDGIGVGGANCIGQMRNLKSLDISNNFFGNYGAKSISELSQLEILN 187

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
           +    I + G+  L  L NL  L +   ++   G +++  L  L  +++S   I     +
Sbjct: 188 VSYSDIDEVGVYQLRKLKNLTSLSIHHNEITDEGTKYIVELDQLTHLDISNNQIETEGAK 247

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR-NFKNLRSL 401
            ++ +S L SLN+ +  I D G   ++ L  LT L++   R+++ G   +R   K+L++L
Sbjct: 248 SISEMSQLTSLNISSNIIGDEGAQYISHLKKLTSLNVSKCRVSEEGVESIRKQLKHLKTL 307

Query: 402 EI 403
           E+
Sbjct: 308 EV 309



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 125/231 (54%), Gaps = 1/231 (0%)

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
            L ++  E  S++  L+ LN+ + +I  E + +L  L  L SL++    I  +G   L+ 
Sbjct: 48  HLENEVVELISELRELRELNIRYCDIGVEEVKYLTKLDKLHSLDIGINQIYADGAKLLST 107

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
           + +L  L++++ ++G  G + ++ L  L  +N++  GI  G    +  + +LKSL++   
Sbjct: 108 MKSLTKLDVAECEIGDEGCQSITELYQLTDLNINGDGIGVGGANCIGQMRNLKSLDISNN 167

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
              + G  +++ L+ L  L++  + I + G   LR  KNL SL I    +TD G K+I +
Sbjct: 168 FFGNYGAKSISELSQLEILNVSYSDIDEVGVYQLRKLKNLTSLSIHHNEITDEGTKYIVE 227

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           L  LT L++S N  +  +  + IS ++ L SLN+S++ I   G ++++H +
Sbjct: 228 LDQLTHLDISNN-QIETEGAKSISEMSQLTSLNISSNIIGDEGAQYISHLK 277



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 27/170 (15%)

Query: 55  QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
           Q  +L S+D+S +   + G   + + S L+ L+ ++   I + G+  LR L NLTSLS  
Sbjct: 155 QMRNLKSLDISNNFFGNYGAKSISELSQLEILNVSYS-DIDEVGVYQLRKLKNLTSLSI- 212

Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
            +N IT +G K    L  L  LD+                           N I     K
Sbjct: 213 HHNEITDEGTKYIVELDQLTHLDISN-------------------------NQIETEGAK 247

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
            +S ++ L SL IS + + D G  Y+  L+KLT LN+  C V+   ++S+
Sbjct: 248 SISEMSQLTSLNISSNIIGDEGAQYISHLKKLTSLNVSKCRVSEEGVESI 297


>gi|320165727|gb|EFW42626.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 553

 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 113/375 (30%), Positives = 171/375 (45%), Gaps = 6/375 (1%)

Query: 85  SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
           SL  N    IS        GL+ LT+L F  NN + +    A AGL  L  L L+R    
Sbjct: 60  SLQGNLLTSISANAFT---GLTALTTL-FLENNQLPSISANALAGLTALQYLSLQRNQLT 115

Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
                   GL  L  LN+ + N         L+GLT +++L +  + +T         L 
Sbjct: 116 SISANTFTGLTALTGLNLDF-NQFASISADTLAGLTTMRTLSLGSNGITSISANAFTSLT 174

Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
            LT+L+L    + +   D+L+ L ++  L+L R QL+      F+ + +L  L+L +NE+
Sbjct: 175 ALTVLDLSYNELPSISADALTGLTAMRTLSLQRNQLTSISANTFTGLTALTGLDLSYNEL 234

Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
                  L GLT L+ L+L++  I        TGL  L  L L+  Q+ +     L+GLT
Sbjct: 235 PSISANALTGLTALQYLSLNNNRITRISANTFTGLTALTTLYLNYNQLPNISANALTGLT 294

Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
            L S++L+   I+       AGL++L SL L   Q++     ALT LT L +L L   RI
Sbjct: 295 ALRSLSLTQNNITTIHANAFAGLTALASLVLVQNQLSSISADALTGLTALQYLSLNNNRI 354

Query: 385 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
           T   A        L  L +    L       +  L++L  L+L+ N  +T       +GL
Sbjct: 355 TRISANAFTGLTALTVLYLSYNELPSISANALAGLTALQYLSLNNN-QITSIAAAAFAGL 413

Query: 445 TGLVSLNVSNSRITS 459
           T L  L + N++ITS
Sbjct: 414 TALTHLPLDNNQITS 428



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 112/374 (29%), Positives = 170/374 (45%), Gaps = 6/374 (1%)

Query: 86  LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
           LDFN   Q +    + L GL+ + +LS   N  IT+    AF  L  L  LDL       
Sbjct: 133 LDFN---QFASISADTLAGLTTMRTLSLGSN-GITSISANAFTSLTALTVLDLSYNELPS 188

Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
                L GL  + +L+++  N +T       +GLT L  L +S +++       L GL  
Sbjct: 189 ISADALTGLTAMRTLSLQR-NQLTSISANTFTGLTALTGLDLSYNELPSISANALTGLTA 247

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
           L  L+L    +T    ++ + L +L  L LN  QL +      + + +L+ L+L  N IT
Sbjct: 248 LQYLSLNNNRITRISANTFTGLTALTTLYLNYNQLPNISANALTGLTALRSLSLTQNNIT 307

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
                   GLT L SL L    +       LTGL  L+ L L++ ++        +GLT 
Sbjct: 308 TIHANAFAGLTALASLVLVQNQLSSISADALTGLTALQYLSLNNNRITRISANAFTGLTA 367

Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           L  + LS+  +   S   LAGL++L+ L+L+  QIT    AA   LT LTHL L   +IT
Sbjct: 368 LTVLYLSYNELPSISANALAGLTALQYLSLNNNQITSIAAAAFAGLTALTHLPLDNNQIT 427

Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
              A        L+ L +    +T         L++LT L L+QN N+   +    +GLT
Sbjct: 428 SISAEAFTGLSALQLLSLNSNQITSIAANAFTGLNALTSLYLNQN-NIAGISANAFTGLT 486

Query: 446 GLVSLNVSNSRITS 459
            L  L + ++  T+
Sbjct: 487 KLTQLYLDDNPFTT 500


>gi|290980468|ref|XP_002672954.1| predicted protein [Naegleria gruberi]
 gi|284086534|gb|EFC40210.1| predicted protein [Naegleria gruberi]
          Length = 349

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 126/246 (51%), Gaps = 7/246 (2%)

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
           L  ++ +  L  LN+   ++  +G +  S++  L  LN+ +N I DE   ++  +  L S
Sbjct: 96  LKFVTEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEMKQLIS 155

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           LN+    IGDEG   ++ +  L  L++S   +G  G +++SG+  L S+N+ +T I    
Sbjct: 156 LNIRENEIGDEGAKYISEMKQLTSLDISYNIIGDEGAKYISGMKQLTSLNIYYTLIGIEG 215

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
            + ++ +  L SLN+   +I   G+  ++ +  LT L++   R  D GA ++   K L S
Sbjct: 216 AKFISEMKQLTSLNISENEIGIEGVKYISEMKQLTSLNISYNRTGDEGAKFISEMKQLTS 275

Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
           L ICG       VK I ++  LT LN+  N  +  +  + IS +  L SLN+  +RI   
Sbjct: 276 LNICG------KVKFISEMKQLTSLNIRGN-RIGVEGAKYISEMKQLTSLNIRGNRIGDQ 328

Query: 461 GLRHLN 466
           GL H N
Sbjct: 329 GLNHEN 334



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 144/305 (47%), Gaps = 16/305 (5%)

Query: 89  NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF--AGLINLVKLDLERCTRIHG 146
           N C  IS      ++  S L  + F+ N  IT + ++ F  +  +N + +D++  T +  
Sbjct: 36  NNCTLISKQFFNVIKERSKLV-IQFKNN--ITEKRVELFMKSQFMNSI-VDVKFSTNLLE 91

Query: 147 GLVNLK---GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
            +  LK    + +L SLNI+  N I     K +S +  L SL IS + + D G  Y+  +
Sbjct: 92  AIEQLKFVTEMKQLTSLNIR-GNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEM 150

Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
           ++L  LN+    +       +S +  L  L+++   + D+G +  S +  L  LN+ +  
Sbjct: 151 KQLISLNIRENEIGDEGAKYISEMKQLTSLDISYNIIGDEGAKYISGMKQLTSLNIYYTL 210

Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
           I  E    +  +  L SLN+    IG EG+  ++ +  L  L +S  + G  G + +S +
Sbjct: 211 IGIEGAKFISEMKQLTSLNISENEIGIEGVKYISEMKQLTSLNISYNRTGDEGAKFISEM 270

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
             L S+N+       G ++ ++ +  L SLN+   +I   G   ++ +  LT L++ G R
Sbjct: 271 KQLTSLNIC------GKVKFISEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNIRGNR 324

Query: 384 ITDSG 388
           I D G
Sbjct: 325 IGDQG 329



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 4/189 (2%)

Query: 267 ECLVHLKGLTNLE---SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
           E +  LK +T ++   SLN+    IG EG   ++ +  L  L +S   +G  G +++S +
Sbjct: 91  EAIEQLKFVTEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEM 150

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
             L S+N+    I D   + ++ +  L SL++    I D G   ++ +  LT L+++   
Sbjct: 151 KQLISLNIRENEIGDEGAKYISEMKQLTSLDISYNIIGDEGAKYISGMKQLTSLNIYYTL 210

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
           I   GA ++   K L SL I    +   GVK+I ++  LT LN+S N    D+  + IS 
Sbjct: 211 IGIEGAKFISEMKQLTSLNISENEIGIEGVKYISEMKQLTSLNISYN-RTGDEGAKFISE 269

Query: 444 LTGLVSLNV 452
           +  L SLN+
Sbjct: 270 MKQLTSLNI 278



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 112/243 (46%), Gaps = 20/243 (8%)

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
           L+ +  +  LTSL+ R  N I  +G K  + +  L  L++        G   +  + +L 
Sbjct: 96  LKFVTEMKQLTSLNIR-GNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEMKQLI 154

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
           SLNI+  N I D   K +S +  L SL IS + + D G  Y+ G+++LT LN+    +  
Sbjct: 155 SLNIR-ENEIGDEGAKYISEMKQLTSLDISYNIIGDEGAKYISGMKQLTSLNIYYTLIGI 213

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE---CLVHLKGL 275
                +S +  L  LN++  ++  +G +  S++  L  LN+ +N   DE    +  +K L
Sbjct: 214 EGAKFISEMKQLTSLNISENEIGIEGVKYISEMKQLTSLNISYNRTGDEGAKFISEMKQL 273

Query: 276 TNLE---------------SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
           T+L                SLN+    IG EG   ++ +  L  L +   ++G  GL H 
Sbjct: 274 TSLNICGKVKFISEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNIRGNRIGDQGLNHE 333

Query: 321 SGL 323
           + L
Sbjct: 334 NSL 336



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 113/263 (42%), Gaps = 49/263 (18%)

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
             +K ++ +  L SL I  +++   G  Y+  +++LT LN+    +       +S +  L
Sbjct: 94  EQLKFVTEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEMKQL 153

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
             LN+   ++ D+G +  S++  L  L++ +N I DE   ++ G+  L SLN+    IG 
Sbjct: 154 ISLNIRENEIGDEGAKYISEMKQLTSLDISYNIIGDEGAKYISGMKQLTSLNIYYTLIGI 213

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD------------ 338
           EG   ++ +  L  L +S+ ++G  G++++S +  L S+N+S+    D            
Sbjct: 214 EGAKFISEMKQLTSLNISENEIGIEGVKYISEMKQLTSLNISYNRTGDEGAKFISEMKQL 273

Query: 339 ------------GSLRKLAGLS------------------SLKSLNLDARQITDTGLAAL 368
                         +++L  L+                   L SLN+   +I D GL   
Sbjct: 274 TSLNICGKVKFISEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNIRGNRIGDQGLNHE 333

Query: 369 TSLTGLTHLDLFGARITDSGAAY 391
            SL       L+GA   +   +Y
Sbjct: 334 NSL-------LWGANKFNKSESY 349



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 1/129 (0%)

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
           L+ +  +  L SLN+   +I   G   ++ +  LT L++    I D GA Y+   K L S
Sbjct: 96  LKFVTEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEMKQLIS 155

Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
           L I    + D G K+I ++  LT L++S N  + D+  + ISG+  L SLN+  + I   
Sbjct: 156 LNIRENEIGDEGAKYISEMKQLTSLDISYNI-IGDEGAKYISGMKQLTSLNIYYTLIGIE 214

Query: 461 GLRHLNHAR 469
           G + ++  +
Sbjct: 215 GAKFISEMK 223



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 93/191 (48%), Gaps = 9/191 (4%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+   L+S+++  +++ D G  ++ +   L SLD ++ I I D G +++ G+  LTSL+ 
Sbjct: 148 SEMKQLISLNIRENEIGDEGAKYISEMKQLTSLDISYNI-IGDEGAKYISGMKQLTSLNI 206

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
                I  +G K  + +  L  L++        G+  +  + +L SLNI + N   D   
Sbjct: 207 YY-TLIGIEGAKFISEMKQLTSLNISENEIGIEGVKYISEMKQLTSLNISY-NRTGDEGA 264

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           K +S +  L SL I C KV      ++  +++LT LN+ G  +       +S +  L  L
Sbjct: 265 KFISEMKQLTSLNI-CGKV-----KFISEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSL 318

Query: 234 NLNRCQLSDDG 244
           N+   ++ D G
Sbjct: 319 NIRGNRIGDQG 329


>gi|283777859|ref|YP_003368614.1| serine/threonine protein kinase [Pirellula staleyi DSM 6068]
 gi|283436312|gb|ADB14754.1| serine/threonine protein kinase [Pirellula staleyi DSM 6068]
          Length = 1487

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 128/430 (29%), Positives = 205/430 (47%), Gaps = 52/430 (12%)

Query: 57   SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL-------T 109
            S L  +DLS + +TD GL  L   S L+ L  +    +SD GLE L    +L       T
Sbjct: 743  SQLAELDLSSTKITDQGLTRLLALSKLERLYLSDN-SLSDNGLEQLAMAKSLRLLVASGT 801

Query: 110  SLSFRRNNAITAQGMKAF-----AGLINLVKLDL-ERCTR-----IHGGLVNLK------ 152
             LS R +  +TA   +       A +   V L L ER  R     + G +V +       
Sbjct: 802  MLSERGHGVLTAALPQTEITWDGADMQRQVALVLLERGARLSVADMRGNIVPVVARREDL 861

Query: 153  --GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
              G +K+  ++   C  I D D+KPL  L +L+SL +S +K+T +G+A L GL  L  ++
Sbjct: 862  PIGRLKVLKVDFAGCRTIGDDDLKPLVALADLESLALSGTKITPAGLANLHGLASLKSID 921

Query: 211  LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-------- 262
            L   P+T A +++L+A        L  C++  +  E   K+ +  VL++G          
Sbjct: 922  LGTLPLTTASVETLAA-------ALPDCKI--ERREPADKLVARWVLSVGGKCTITSDES 972

Query: 263  ----EITDECLVHLKGLTNLESLNLDSCGIG-DEGLVNLTGLCNLKCLELSDTQVGSSGL 317
                E+T    V  +   ++E +NL  C IG D  L ++  L NLK L L  + +  + L
Sbjct: 973  ASQVELTSATTVLPEAAIHVEKINLTDCKIGPDAPLASIAELANLKSLLLVGSDITDAQL 1032

Query: 318  RHLSGLTNLESINLSFTGISDGSLRK-LAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
              ++GL +L  ++LS T ++  ++   LA L  L+ L L   ++    L A+T+L  L+H
Sbjct: 1033 TSIAGLKSLSELSLSDTAVTAPAVNGLLAQLPQLQRLYLSGTKVDRGVLVAVTNLPKLSH 1092

Query: 377  LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
            L L G  +  S  + L+    L  L++   GL+D   + +  LSSL  L + +N  LTD 
Sbjct: 1093 LSLAGIEVAPSDLSLLKKCPQLEWLDLSSTGLSDEASQQLVGLSSLRELAVPKN-PLTDA 1151

Query: 437  -TLELISGLT 445
               ELI+ + 
Sbjct: 1152 GQEELIAAMP 1161



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 176/364 (48%), Gaps = 33/364 (9%)

Query: 64   LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
            L+G +V  S L  LK C  L+ LD +    +SD   + L GLS+L  L+  +N    A  
Sbjct: 1095 LAGIEVAPSDLSLLKKCPQLEWLDLS-STGLSDEASQQLVGLSSLRELAVPKNPLTDAGQ 1153

Query: 124  MKAFAGLIN--LV--KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP---- 175
             +  A + N  +V   LD +R       ++  +G ++L++        +T     P    
Sbjct: 1154 EELIAAMPNCHVVGDPLDPQRLAARW--ILEKRGTVELDT------GAVTSPKELPRDKC 1205

Query: 176  ------LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
                  L+ L NLK+ ++         I  + G  +L  L L    +T A L ++  L  
Sbjct: 1206 HVLAIDLAELANLKAAEV---------IQVIAGCSELESLRLSDTAITDADLAAIGKLKL 1256

Query: 230  LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
            L  L L    ++DDG  K +++  L+VL++    IT   L + +  ++L+ LNL +  + 
Sbjct: 1257 LKKLYLANLAITDDGLAKLAELELLEVLDVSGGRITGAGLANFRSASSLQELNLSNTMLT 1316

Query: 290  DEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
            D  L  +  + +L  L++S  + V  +GL+ L+GLT L S+ L  T ++D +   LA  +
Sbjct: 1317 DPNLAAIAPMTSLISLDMSACRGVSDAGLKKLAGLTQLRSLGLRGTKLTDAAAESLASYA 1376

Query: 349  SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
             L+ L+LD+  I D+G+  L SLT L  L L    +TD G A L   K+LRS+ +    +
Sbjct: 1377 KLEQLDLDSTSIGDSGVEKLLSLTSLRRLVLAKTSVTDGGVASLAKLKDLRSVSLVRTSV 1436

Query: 409  TDAG 412
            T+A 
Sbjct: 1437 TEAA 1440



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 152/325 (46%), Gaps = 47/325 (14%)

Query: 176  LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
            L+ L  L+ L +S +KV    +  +  L KL+ L+L G  V  + L  L     L +L+L
Sbjct: 1060 LAQLPQLQRLYLSGTKVDRGVLVAVTNLPKLSHLSLAGIEVAPSDLSLLKKCPQLEWLDL 1119

Query: 236  NRCQLSDDGCEKFSKIGSLKVLNLGFNEITD---ECLV------HLKG------------ 274
            +   LSD+  ++   + SL+ L +  N +TD   E L+      H+ G            
Sbjct: 1120 SSTGLSDEASQQLVGLSSLRELAVPKNPLTDAGQEELIAAMPNCHVVGDPLDPQRLAARW 1179

Query: 275  --------------LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
                          +T+ + L  D C +     ++L  L NLK  E+         ++ +
Sbjct: 1180 ILEKRGTVELDTGAVTSPKELPRDKCHVL---AIDLAELANLKAAEV---------IQVI 1227

Query: 321  SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
            +G + LES+ LS T I+D  L  +  L  LK L L    ITD GLA L  L  L  LD+ 
Sbjct: 1228 AGCSELESLRLSDTAITDADLAAIGKLKLLKKLYLANLAITDDGLAKLAELELLEVLDVS 1287

Query: 381  GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
            G RIT +G A  R+  +L+ L +    LTD  +  I  ++SL  L++S    ++D  L+ 
Sbjct: 1288 GGRITGAGLANFRSASSLQELNLSNTMLTDPNLAAIAPMTSLISLDMSACRGVSDAGLKK 1347

Query: 441  ISGLTGLVSLNVSNSRITSAGLRHL 465
            ++GLT L SL +  +++T A    L
Sbjct: 1348 LAGLTQLRSLGLRGTKLTDAAAESL 1372



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 125/488 (25%), Positives = 193/488 (39%), Gaps = 85/488 (17%)

Query: 59   LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
            +L++D  G  VTDS L  L+    L+ L       I+D G+  L  L +L  LS  R  A
Sbjct: 673  ILAIDFEGRGVTDSDLASLELAPGLRQLSL-AATPITDTGIASLAKLKSLAKLSLART-A 730

Query: 119  ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
            IT +G+++ A L  L +LDL        GL  L  L KLE L +   N ++D+ ++ L+ 
Sbjct: 731  ITNKGLESLARLSQLAELDLSSTKITDQGLTRLLALSKLERLYLS-DNSLSDNGLEQLAM 789

Query: 179  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
              +L+ L  S + +++ G   L      T +  +G  +       L   G+   +   R 
Sbjct: 790  AKSLRLLVASGTMLSERGHGVLTAALPQTEITWDGADMQRQVALVLLERGARLSVADMRG 849

Query: 239  QLSDDGCEKFS-KIGSLKVLNLGF---NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
             +      +    IG LKVL + F     I D+ L  L  L +LESL L    I   GL 
Sbjct: 850  NIVPVVARREDLPIGRLKVLKVDFAGCRTIGDDDLKPLVALADLESLALSGTKITPAGLA 909

Query: 295  NLTGLCNLKCLELSDTQVGSSGLRHLSG-----------------------------LTN 325
            NL GL +LK ++L    + ++ +  L+                              +T+
Sbjct: 910  NLHGLASLKSIDLGTLPLTTASVETLAAALPDCKIERREPADKLVARWVLSVGGKCTITS 969

Query: 326  LES----------------------INLSFTGI-SDGSLRKLAGLSSLKSLNLDARQITD 362
             ES                      INL+   I  D  L  +A L++LKSL L    ITD
Sbjct: 970  DESASQVELTSATTVLPEAAIHVEKINLTDCKIGPDAPLASIAELANLKSLLLVGSDITD 1029

Query: 363  TGLAA-------------------------LTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
              L +                         L  L  L  L L G ++       + N   
Sbjct: 1030 AQLTSIAGLKSLSELSLSDTAVTAPAVNGLLAQLPQLQRLYLSGTKVDRGVLVAVTNLPK 1089

Query: 398  LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
            L  L + G  +  + +  +K    L  L+LS +  L+D+  + + GL+ L  L V  + +
Sbjct: 1090 LSHLSLAGIEVAPSDLSLLKKCPQLEWLDLS-STGLSDEASQQLVGLSSLRELAVPKNPL 1148

Query: 458  TSAGLRHL 465
            T AG   L
Sbjct: 1149 TDAGQEEL 1156



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 100/216 (46%), Gaps = 3/216 (1%)

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
           L+ L+L    ITD  +  L  L +L  L+L    I ++GL +L  L  L  L+LS T++ 
Sbjct: 697 LRQLSLAATPITDTGIASLAKLKSLAKLSLARTAITNKGLESLARLSQLAELDLSSTKIT 756

Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
             GL  L  L+ LE + LS   +SD  L +LA   SL+ L      +++ G   LT+   
Sbjct: 757 DQGLTRLLALSKLERLYLSDNSLSDNGLEQLAMAKSLRLLVASGTMLSERGHGVLTAALP 816

Query: 374 LTHLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS-QNC 431
            T +   GA +    A   L     L   ++ G  +     +    +  L +L +    C
Sbjct: 817 QTEITWDGADMQRQVALVLLERGARLSVADMRGNIVPVVARREDLPIGRLKVLKVDFAGC 876

Query: 432 N-LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
             + D  L+ +  L  L SL +S ++IT AGL +L+
Sbjct: 877 RTIGDDDLKPLVALADLESLALSGTKITPAGLANLH 912



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 2/142 (1%)

Query: 253 SLKVLNLGFNE--ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
           SL++L + F    +TD  L  L+    L  L+L +  I D G+ +L  L +L  L L+ T
Sbjct: 670 SLEILAIDFEGRGVTDSDLASLELAPGLRQLSLAATPITDTGIASLAKLKSLAKLSLART 729

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
            + + GL  L+ L+ L  ++LS T I+D  L +L  LS L+ L L    ++D GL  L  
Sbjct: 730 AITNKGLESLARLSQLAELDLSSTKITDQGLTRLLALSKLERLYLSDNSLSDNGLEQLAM 789

Query: 371 LTGLTHLDLFGARITDSGAAYL 392
              L  L   G  +++ G   L
Sbjct: 790 AKSLRLLVASGTMLSERGHGVL 811



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 3/159 (1%)

Query: 93   QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNL 151
            +I+  GL + R  S+L  L+   N  +T   + A A + +L+ LD+  C  +   GL  L
Sbjct: 1290 RITGAGLANFRSASSLQELNLS-NTMLTDPNLAAIAPMTSLISLDMSACRGVSDAGLKKL 1348

Query: 152  KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
             GL +L SL ++    +TD+  + L+    L+ L +  + + DSG+  L  L  L  L L
Sbjct: 1349 AGLTQLRSLGLRGTK-LTDAAAESLASYAKLEQLDLDSTSIGDSGVEKLLSLTSLRRLVL 1407

Query: 212  EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
                VT   + SL+ L  L  ++L R  +++  C +  K
Sbjct: 1408 AKTSVTDGGVASLAKLKDLRSVSLVRTSVTEAACTELEK 1446


>gi|46447589|ref|YP_008954.1| hypothetical protein pc1955 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401230|emb|CAF24679.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 454

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 112/324 (34%), Positives = 164/324 (50%), Gaps = 16/324 (4%)

Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
            E        LV LKGL+       + C     +D+K    LT + +L    S++T+   
Sbjct: 136 FEPFNSTEESLVGLKGLLNFA----QQCQL---NDLKNYLELTVVSALLNQASQLTEFQR 188

Query: 198 AYLKGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLK 255
                L ++  LN  G   +  A L +L    +L  L+L  CQ ++DDG    + + SL+
Sbjct: 189 IINHFLDEIEALNFSGNAHLADAHLLALKNCENLKLLHLEACQAITDDGLAHLALLTSLQ 248

Query: 256 VLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-V 312
            LNL F   +TD  L HL  LT L+ LNL  C  I D GL +LT L +L+ L LSD + +
Sbjct: 249 HLNLYFCVNLTDAGLAHLTPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENL 308

Query: 313 GSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS 370
             +GL HL+ LT L  +NLS    +++  L  LA L+ L+ LNL     +TD G + L S
Sbjct: 309 TDAGLAHLTPLTALLYLNLSKCYHLTNVGLAHLAPLTGLQYLNLKWCWNLTDAGFSHLAS 368

Query: 371 LTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLS 428
           LT L HLDL     +TD+G AYL +   L+ L +     LTD G+ H+  L++L  L+L 
Sbjct: 369 LTALQHLDLSDCENLTDAGLAYLASLTALQYLGLSQCRNLTDVGLAHLTPLTALQHLDLR 428

Query: 429 QNCNLTDKTLELISGLTGLVSLNV 452
           +   +TD  L     L   ++L +
Sbjct: 429 ECDKVTDAGLARFKTLATSLNLKI 452



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 107/190 (56%), Gaps = 4/190 (2%)

Query: 68  DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           ++TD+GL HL   + LQ L+ ++C +I+D GL HL  L++L  L+      +T  G+   
Sbjct: 257 NLTDAGLAHLTPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENLTDAGLAHL 316

Query: 128 AGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
             L  L+ L+L +C  +   GL +L  L  L+ LN+KWC  +TD+    L+ LT L+ L 
Sbjct: 317 TPLTALLYLNLSKCYHLTNVGLAHLAPLTGLQYLNLKWCWNLTDAGFSHLASLTALQHLD 376

Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDD 243
           +S C  +TD+G+AYL  L  L  L L  C  +T   L  L+ L +L +L+L  C +++D 
Sbjct: 377 LSDCENLTDAGLAYLASLTALQYLGLSQCRNLTDVGLAHLTPLTALQHLDLRECDKVTDA 436

Query: 244 GCEKFSKIGS 253
           G  +F  + +
Sbjct: 437 GLARFKTLAT 446



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 87/228 (38%), Positives = 126/228 (55%), Gaps = 18/228 (7%)

Query: 251 IGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK----- 303
           +  ++ LN   N  + D  L+ LK   NL+ L+L++C  I D+GL +L  L +L+     
Sbjct: 194 LDEIEALNFSGNAHLADAHLLALKNCENLKLLHLEACQAITDDGLAHLALLTSLQHLNLY 253

Query: 304 -CLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQI 360
            C+ L+D     +GL HL+ LT L+ +NLS+   I+D  L  L  L+ L+ LNL D   +
Sbjct: 254 FCVNLTD-----AGLAHLTPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENL 308

Query: 361 TDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKD 418
           TD GLA LT LT L +L+L     +T+ G A+L     L+ L +     LTDAG  H+  
Sbjct: 309 TDAGLAHLTPLTALLYLNLSKCYHLTNVGLAHLAPLTGLQYLNLKWCWNLTDAGFSHLAS 368

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHL 465
           L++L  L+LS   NLTD  L  ++ LT L  L +S  R +T  GL HL
Sbjct: 369 LTALQHLDLSDCENLTDAGLAYLASLTALQYLGLSQCRNLTDVGLAHL 416



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 90/256 (35%), Positives = 135/256 (52%), Gaps = 9/256 (3%)

Query: 83  LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
           +++L+F+    ++D  L  L+   NL  L      AIT  G+   A L +L  L+L  C 
Sbjct: 197 IEALNFSGNAHLADAHLLALKNCENLKLLHLEACQAITDDGLAHLALLTSLQHLNLYFCV 256

Query: 143 RI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL 200
            +   GL +L  L  L+ LN+ +C  ITD+ +  L+ LT+L+ L +S C  +TD+G+A+L
Sbjct: 257 NLTDAGLAHLTPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENLTDAGLAHL 316

Query: 201 KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLN 258
             L  L  LNL  C  +T   L  L+ L  L YLNL  C  L+D G    + + +L+ L+
Sbjct: 317 TPLTALLYLNLSKCYHLTNVGLAHLAPLTGLQYLNLKWCWNLTDAGFSHLASLTALQHLD 376

Query: 259 LGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSS 315
           L   E +TD  L +L  LT L+ L L  C  + D GL +LT L  L+ L+L +  +V  +
Sbjct: 377 LSDCENLTDAGLAYLASLTALQYLGLSQCRNLTDVGLAHLTPLTALQHLDLRECDKVTDA 436

Query: 316 GLRHLSGLTNLESINL 331
           GL     L    S+NL
Sbjct: 437 GLARFKTLAT--SLNL 450



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 87/256 (33%), Positives = 136/256 (53%), Gaps = 10/256 (3%)

Query: 61  SVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
           +++ SG + + D+ L+ LK+C NL+ L    C  I+D GL HL  L++L  L+      +
Sbjct: 199 ALNFSGNAHLADAHLLALKNCENLKLLHLEACQAITDDGLAHLALLTSLQHLNLYFCVNL 258

Query: 120 TAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           T  G+     L  L  L+L  C +I   GL +L  L  L+ LN+  C  +TD+ +  L+ 
Sbjct: 259 TDAGLAHLTPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENLTDAGLAHLTP 318

Query: 179 LTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLN 236
           LT L  L +S C  +T+ G+A+L  L  L  LNL+ C  +T A    L++L +L +L+L+
Sbjct: 319 LTALLYLNLSKCYHLTNVGLAHLAPLTGLQYLNLKWCWNLTDAGFSHLASLTALQHLDLS 378

Query: 237 RCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGL 293
            C+ L+D G    + + +L+ L L     +TD  L HL  LT L+ L+L  C  + D GL
Sbjct: 379 DCENLTDAGLAYLASLTALQYLGLSQCRNLTDVGLAHLTPLTALQHLDLRECDKVTDAGL 438

Query: 294 VNLTGLC---NLKCLE 306
                L    NLK ++
Sbjct: 439 ARFKTLATSLNLKIIK 454



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/198 (38%), Positives = 105/198 (53%), Gaps = 23/198 (11%)

Query: 288 IGDEGLVNLTGLCNLK----CLELSDTQVGSSGLRHLSGLTNLESI---------NLSFT 334
           +G +GL+N    C L      LEL+   V S+ L   S LT  + I          L+F+
Sbjct: 147 VGLKGLLNFAQQCQLNDLKNYLELT---VVSALLNQASQLTEFQRIINHFLDEIEALNFS 203

Query: 335 G---ISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDL-FGARITDSGA 389
           G   ++D  L  L    +LK L+L+A Q ITD GLA L  LT L HL+L F   +TD+G 
Sbjct: 204 GNAHLADAHLLALKNCENLKLLHLEACQAITDDGLAHLALLTSLQHLNLYFCVNLTDAGL 263

Query: 390 AYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
           A+L     L+ L +     +TDAG+ H+  L+ L  LNLS   NLTD  L  ++ LT L+
Sbjct: 264 AHLTPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENLTDAGLAHLTPLTALL 323

Query: 449 SLNVSN-SRITSAGLRHL 465
            LN+S    +T+ GL HL
Sbjct: 324 YLNLSKCYHLTNVGLAHL 341


>gi|42567079|ref|NP_194115.3| leucine-rich repeat-containing protein [Arabidopsis thaliana]
 gi|20466546|gb|AAM20590.1| unknown protein [Arabidopsis thaliana]
 gi|22136448|gb|AAM91302.1| unknown protein [Arabidopsis thaliana]
 gi|51971383|dbj|BAD44356.1| putative protein [Arabidopsis thaliana]
 gi|332659411|gb|AEE84811.1| leucine-rich repeat-containing protein [Arabidopsis thaliana]
          Length = 597

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 127/418 (30%), Positives = 199/418 (47%), Gaps = 70/418 (16%)

Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCIT 169
           +  R  +++ A+ M    G +NL+ L+L  C RI+   L  + GL  L  L++  C  +T
Sbjct: 66  IDLRGKSSVNAEWMAYIGGFVNLITLNLSDCQRINSSTLWPITGLTSLTELDLSRCFKVT 125

Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
           D+ MK L  + NLK L IS + VT+ GI+ L  L+KL+LL+L G PVT   L SL AL  
Sbjct: 126 DAGMKHLQSVVNLKKLWISQTGVTEVGISLLASLKKLSLLDLGGLPVTDQNLISLQALTK 185

Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
           L YL++    +++ G     K  +L  LNL +  IT         + +LE L++++C I 
Sbjct: 186 LEYLDIWGSNVTNQGAVSILKFSNLSFLNLSWTSIT-----QTPNIPHLECLHMNTCTIV 240

Query: 290 DEGLVNLTGLCNLKCLELS------DTQ--------------VGSSGLRHLSGLT---NL 326
            E   + + L +LK L LS      +T+              V  + L++ S L    NL
Sbjct: 241 SEPKTH-SSLASLKKLVLSGANFSAETESLSFTNKSCITYLDVSKTSLKNFSFLETMFNL 299

Query: 327 ESINLSFTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAAL----------------- 368
           E ++LS T   D S+  +A +  +LK+LN+   QIT +G+  L                 
Sbjct: 300 EHLDLSSTAFGDDSVGFVACVGENLKNLNVSDTQITPSGVGNLAGHVPQLETLSMSQTFV 359

Query: 369 ---------TSLTGLTHLDL-------FGARIT-----DSGAAYLRNFKNLRSLEICGGG 407
                    T++  +  LDL       F   I+     +   A L++  +L +L +    
Sbjct: 360 DDLSILLISTTMPCIKALDLGMNSTLGFYYLISPQEEKEKSLAALQSLTSLETLSLEHPY 419

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           L D  +  +  L+ LT L+L+ + +LTD TL  +S L  LVSL V +  +TS GL   
Sbjct: 420 LGDKALSGLSSLTGLTHLSLT-STSLTDSTLHHLSSLPNLVSLGVRDGVLTSNGLEKF 476


>gi|335058613|gb|AEH26502.1| leucine-rich repeat domain protein [uncultured Acidobacteria
           bacterium A11]
          Length = 402

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 128/257 (49%), Gaps = 2/257 (0%)

Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
           S++RN+ +    +   A L +L+ LDL        GL  +  L  LE LN+     +TD+
Sbjct: 136 SYKRNDTLVDAWLDRLADLPDLISLDLANTGVAGPGLKVVGTLKNLERLNLT-LTPVTDA 194

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
            ++ L+GLTNL+ L ++ +K T  G  +L  L++L   N    PV  A L  +S +  L 
Sbjct: 195 HLEHLAGLTNLRVLSLASAKCTGEGFRFLGKLKQLENANFHFTPVNDAGLAGISTVTGLE 254

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
            L +  C  +D G    +K+ +L+ L +G  + T   +  L  LT L  L+L       E
Sbjct: 255 RLEIVHCHFTDAGAPHLAKLVNLERLQIGSRDATGAAIEPLTALTKLRELDLQDNQATAE 314

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
           G+ + + + +L+ L +   Q+   G   ++ L+NLE +  +  G++D +L   A L  L+
Sbjct: 315 GVRHASRIPSLRVLRIHG-QIKDEGAASIAQLSNLEILVANNAGLTDDALDHFARLPRLQ 373

Query: 352 SLNLDARQITDTGLAAL 368
            L +   +ITD  LA L
Sbjct: 374 RLEIKGNKITDPALARL 390



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/250 (32%), Positives = 118/250 (47%), Gaps = 2/250 (0%)

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
           A LD L+ L  L  L+L    ++  G +    + +L+ LNL    +TD  L HL GLTNL
Sbjct: 146 AWLDRLADLPDLISLDLANTGVAGPGLKVVGTLKNLERLNLTLTPVTDAHLEHLAGLTNL 205

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
             L+L S     EG   L  L  L+      T V  +GL  +S +T LE + +     +D
Sbjct: 206 RVLSLASAKCTGEGFRFLGKLKQLENANFHFTPVNDAGLAGISTVTGLERLEIVHCHFTD 265

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
                LA L +L+ L + +R  T   +  LT+LT L  LDL   + T  G  +     +L
Sbjct: 266 AGAPHLAKLVNLERLQIGSRDATGAAIEPLTALTKLRELDLQDNQATAEGVRHASRIPSL 325

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
           R L I  G + D G   I  LS+L +L ++ N  LTD  L+  + L  L  L +  ++IT
Sbjct: 326 RVLRIH-GQIKDEGAASIAQLSNLEIL-VANNAGLTDDALDHFARLPRLQRLEIKGNKIT 383

Query: 459 SAGLRHLNHA 468
              L  L  A
Sbjct: 384 DPALARLQQA 393



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 120/255 (47%), Gaps = 1/255 (0%)

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
           K  + + D+ +  L+ L +L SL ++ + V   G+  +  L+ L  LNL   PVT A L+
Sbjct: 138 KRNDTLVDAWLDRLADLPDLISLDLANTGVAGPGLKVVGTLKNLERLNLTLTPVTDAHLE 197

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
            L+ L +L  L+L   + + +G     K+  L+  N  F  + D  L  +  +T LE L 
Sbjct: 198 HLAGLTNLRVLSLASAKCTGEGFRFLGKLKQLENANFHFTPVNDAGLAGISTVTGLERLE 257

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
           +  C   D G  +L  L NL+ L++       + +  L+ LT L  ++L     +   +R
Sbjct: 258 IVHCHFTDAGAPHLAKLVNLERLQIGSRDATGAAIEPLTALTKLRELDLQDNQATAEGVR 317

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
             + + SL+ L +   QI D G A++  L+ L  L    A +TD    +      L+ LE
Sbjct: 318 HASRIPSLRVLRIHG-QIKDEGAASIAQLSNLEILVANNAGLTDDALDHFARLPRLQRLE 376

Query: 403 ICGGGLTDAGVKHIK 417
           I G  +TD  +  ++
Sbjct: 377 IKGNKITDPALARLQ 391



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 131/286 (45%), Gaps = 30/286 (10%)

Query: 46  DKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
           D W+D +A     L+S+DL+ + V   GL  +    NL+ L+      ++D  LEHL GL
Sbjct: 145 DAWLDRLADL-PDLISLDLANTGVAGPGLKVVGTLKNLERLNLTLT-PVTDAHLEHLAGL 202

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
           +NL  LS                       L   +CT    G   L  L +LE+ N  + 
Sbjct: 203 TNLRVLS-----------------------LASAKCT--GEGFRFLGKLKQLENANFHFT 237

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
             + D+ +  +S +T L+ L+I     TD+G  +L  L  L  L +     T A ++ L+
Sbjct: 238 -PVNDAGLAGISTVTGLERLEIVHCHFTDAGAPHLAKLVNLERLQIGSRDATGAAIEPLT 296

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
           AL  L  L+L   Q + +G    S+I SL+VL +   +I DE    +  L+NLE L  ++
Sbjct: 297 ALTKLRELDLQDNQATAEGVRHASRIPSLRVLRI-HGQIKDEGAASIAQLSNLEILVANN 355

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESIN 330
            G+ D+ L +   L  L+ LE+   ++    L  L   L  LE + 
Sbjct: 356 AGLTDDALDHFARLPRLQRLEIKGNKITDPALARLQQALPALEVVR 401



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 101/209 (48%), Gaps = 12/209 (5%)

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
           +SL  L  L  ++LN  Q   D   K +            + + D  L  L  L +L SL
Sbjct: 113 ESLHLLDRLTAIDLNDRQSPHDKSYKRN------------DTLVDAWLDRLADLPDLISL 160

Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
           +L + G+   GL  +  L NL+ L L+ T V  + L HL+GLTNL  ++L+    +    
Sbjct: 161 DLANTGVAGPGLKVVGTLKNLERLNLTLTPVTDAHLEHLAGLTNLRVLSLASAKCTGEGF 220

Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
           R L  L  L++ N     + D GLA ++++TGL  L++     TD+GA +L    NL  L
Sbjct: 221 RFLGKLKQLENANFHFTPVNDAGLAGISTVTGLERLEIVHCHFTDAGAPHLAKLVNLERL 280

Query: 402 EICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           +I     T A ++ +  L+ L  L+L  N
Sbjct: 281 QIGSRDATGAAIEPLTALTKLRELDLQDN 309


>gi|386333663|ref|YP_006029833.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
 gi|334196112|gb|AEG69297.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
          Length = 629

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 148/485 (30%), Positives = 219/485 (45%), Gaps = 30/485 (6%)

Query: 2   LPRDISQQIFNEL--VYSRCLTEVSLE------------AFRDCALQDLCLGQYPGVNDK 47
           LP ++ QQI +       R + EV+ E              R+ A+    LG+YP +   
Sbjct: 91  LPPELWQQIGSSAGARPRRAMREVNRELRNASRAVVTHLTIRNPAMFG-QLGKYPALKSV 149

Query: 48  W------MDVIASQGSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG 98
                  ++ + +    +  +D+S   GS V+++GL  L     L+SL  N  I+I   G
Sbjct: 150 RFKGALTLEALKALPPGVEHLDISRCTGSGVSNAGLALLA-TRPLKSLSLN-GIEIDAEG 207

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
              L   ++LTSLS     +I  +   A A   ++  LDL        G   L G   L 
Sbjct: 208 ARLLATCTSLTSLSLT-GCSIGDRAATALARSRSIASLDLSVNMIGPDGARALAG-APLA 265

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
           SLN+   N I D     L+    LKSL  S + + D+G+        LT LNL G  +  
Sbjct: 266 SLNLH-NNGIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNAVLTQLNLAGNMIGP 324

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
           A   +L    SL  L+L+  +L D G +  +   SL  LNL  NEI D+    L   T L
Sbjct: 325 AGARALRCNTSLTELDLSTNRLGDAGAQVLAANRSLTSLNLRHNEIGDDGTEALARNTTL 384

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
           +SLNL    IG  G   L G   L+ L+L    +   G   L+  T+L S++L    I D
Sbjct: 385 KSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLGSNRIGD 444

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
              R +A   +L  L+L    I D G  AL     LT L+L+G  + D GAA L +   L
Sbjct: 445 SGARAIATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAALAHHPRL 504

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
            SL +    +   G +H+   ++LT L+LS+N  +  +  + +S  T L +LNVS++ I 
Sbjct: 505 TSLNLGRNRIGPNGAQHLAKSATLTELDLSEN-RIGPEGADALSLSTVLTTLNVSDNAIG 563

Query: 459 SAGLR 463
             G R
Sbjct: 564 EKGAR 568



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 116/402 (28%), Positives = 169/402 (42%), Gaps = 75/402 (18%)

Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
           S R   A+T + +KA      +  LD+ RCT   G  V+  GL  L +            
Sbjct: 148 SVRFKGALTLEALKALP--PGVEHLDISRCT---GSGVSNAGLALLAT------------ 190

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
             +PL      KSL ++  ++   G   L     LT L+L GC +      +L+   S+ 
Sbjct: 191 --RPL------KSLSLNGIEIDAEGARLLATCTSLTSLSLTGCSIGDRAATALARSRSIA 242

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
            L+L+   +  DG    +    L  LNL  N I DE  + L     L+SLN  + GIGD 
Sbjct: 243 SLDLSVNMIGPDGARALAGA-PLASLNLHNNGIGDEGALALATSGTLKSLNASNNGIGDA 301

Query: 292 G------------------LVNLTGLCNLKC------LELSDTQVGSSGLRHLSGLTNLE 327
           G                  ++   G   L+C      L+LS  ++G +G + L+   +L 
Sbjct: 302 GVLGFADNAVLTQLNLAGNMIGPAGARALRCNTSLTELDLSTNRLGDAGAQVLAANRSLT 361

Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
           S+NL    I D     LA  ++LKSLNL    I   G  AL   T L  LDL    I   
Sbjct: 362 SLNLRHNEIGDDGTEALARNTTLKSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPY 421

Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG---- 443
           GA+ L    +L SL +    + D+G + I    +LTLL+LS+N N+ D   + ++G    
Sbjct: 422 GASALARNTSLASLHLGSNRIGDSGARAIATSRTLTLLDLSRN-NIHDAGAQALAGNGSL 480

Query: 444 ----LTG----------------LVSLNVSNSRITSAGLRHL 465
               L G                L SLN+  +RI   G +HL
Sbjct: 481 TSLNLYGNEVDDDGAAALAHHPRLTSLNLGRNRIGPNGAQHL 522



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 125/453 (27%), Positives = 185/453 (40%), Gaps = 56/453 (12%)

Query: 37  CLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD 96
           C G   GV++  + ++A++   L S+ L+G ++   G   L  C++L SL    C  I D
Sbjct: 175 CTGS--GVSNAGLALLATR--PLKSLSLNGIEIDAEGARLLATCTSLTSLSLTGC-SIGD 229

Query: 97  GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156
                L    ++ SL    N  I   G +A AG   L  L+L        G + L     
Sbjct: 230 RAATALARSRSIASLDLSVN-MIGPDGARALAG-APLASLNLHNNGIGDEGALALATSGT 287

Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
           L+SLN    N I D+ +   +    L  L ++ + +  +G   L+    LT L+L    +
Sbjct: 288 LKSLNAS-NNGIGDAGVLGFADNAVLTQLNLAGNMIGPAGARALRCNTSLTELDLSTNRL 346

Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE--------- 267
             A    L+A  SL  LNL   ++ DDG E  ++  +LK LNL +N I            
Sbjct: 347 GDAGAQVLAANRSLTSLNLRHNEIGDDGTEALARNTTLKSLNLSYNPIGFWGAGALGGST 406

Query: 268 ---------CLVHLKGL------TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
                    C +   G       T+L SL+L S  IGD                      
Sbjct: 407 TLRELDLRCCAIDPYGASALARNTSLASLHLGSNRIGD---------------------- 444

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
             SG R ++    L  ++LS   I D   + LAG  SL SLNL   ++ D G AAL    
Sbjct: 445 --SGARAIATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAALAHHP 502

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
            LT L+L   RI  +GA +L     L  L++    +   G   +   + LT LN+S N  
Sbjct: 503 RLTSLNLGRNRIGPNGAQHLAKSATLTELDLSENRIGPEGADALSLSTVLTTLNVSDNAI 562

Query: 433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
                       T L SL+  N+ +  AG + L
Sbjct: 563 GEKGARAFAEKSTSLTSLDARNNGMGEAGAKML 595



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 161/379 (42%), Gaps = 30/379 (7%)

Query: 56  GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
           G+ L S++L  + + D G + L     L+SL+ +    I D G+      + LT L+   
Sbjct: 261 GAPLASLNLHNNGIGDEGALALATSGTLKSLNASNN-GIGDAGVLGFADNAVLTQLNLA- 318

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
            N I   G +A     +L +LDL        G   L     L SLN++  N I D   + 
Sbjct: 319 GNMIGPAGARALRCNTSLTELDLSTNRLGDAGAQVLAANRSLTSLNLRH-NEIGDDGTEA 377

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           L+  T LKSL +S + +   G   L G   L  L+L  C +      +L+   SL  L+L
Sbjct: 378 LARNTTLKSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHL 437

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
              ++ D G    +   +L +L+L  N I D     L G  +L SLNL    + D+G   
Sbjct: 438 GSNRIGDSGARAIATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAA 497

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           L     L  L L   ++G +G +H                        LA  ++L  L+L
Sbjct: 498 LAHHPRLTSLNLGRNRIGPNGAQH------------------------LAKSATLTELDL 533

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVK 414
              +I   G  AL+  T LT L++    I + GA A+     +L SL+    G+ +AG K
Sbjct: 534 SENRIGPEGADALSLSTVLTTLNVSDNAIGEKGARAFAEKSTSLTSLDARNNGMGEAGAK 593

Query: 415 HIKDLSSLTLLNLSQNCNL 433
            ++  + LT     QN N 
Sbjct: 594 MLEANTRLT--GTQQNPNF 610


>gi|348503268|ref|XP_003439187.1| PREDICTED: hypothetical protein LOC100705990 [Oreochromis
           niloticus]
          Length = 894

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 121/410 (29%), Positives = 200/410 (48%), Gaps = 23/410 (5%)

Query: 5   DISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDL 64
           ++++ + N + + R L   +LE F  C +Q   L  YP   ++ +  + +  ++L  + L
Sbjct: 474 ELAELLLNHMSHERLLHPRTLELFFGCPIQKFVLNSYPYSTNELLRQLRA-FTALKHLSL 532

Query: 65  SGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
             S  +TDSGL  L     LQ L+   C +++D  L+H+ GL NL  LS  +   +T  G
Sbjct: 533 VNSPLITDSGLCILSTLVKLQYLNLASCSKLTDSCLQHITGLKNLCFLSLDQTK-VTDAG 591

Query: 124 MKAFAGLIN--LVKLDLERCTRIHGGLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLT 180
           M  +   +   L +L L +       L  L   + +L  L+IK        D+  L+ ++
Sbjct: 592 MVLYLQSVPSCLSQLSLNQTAVTETTLAVLPTSVPQLRLLSIKQTKV---KDLTALAAMS 648

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           +L++L +  + VT++ + +L     LT L L G PV     D   AL  +  L L R  L
Sbjct: 649 SLQTLNLDGTGVTEASLEHLATHPALTSLTLVGIPVA----DGSHALQIISGLKLTRITL 704

Query: 241 ------SDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
                 +D G    S++  L  L+L  + +ITD+ + HL  LT L+ L+L +  + D GL
Sbjct: 705 PGRHSVTDSGLSFLSRLTLLSELDLTDYTQITDQGVSHLSTLTRLKKLSLSNTQVTDAGL 764

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRK-LAGLSSLK 351
            +L  +  L+ L L  T V S G+  L + L +L+ + L+ T + D  +RK L   S L 
Sbjct: 765 PSLRCMQELQELCLDRTAVTSRGVADLITCLPHLQVLGLASTQVGDNVVRKGLIRCSQLV 824

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
            LNL   +ITD GL  L  +  L  ++L G  ++  G A L +  N+ S+
Sbjct: 825 KLNLSRTRITDHGLKYLKQMR-LAQVNLDGTGVSLMGIASLLSCTNINSI 873



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 111/355 (31%), Positives = 180/355 (50%), Gaps = 39/355 (10%)

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
           ++AF  L +L  ++    T    GL  L  L+KL+ LN+  C+ +TDS ++ ++GL NL 
Sbjct: 521 LRAFTALKHLSLVNSPLIT--DSGLCILSTLVKLQYLNLASCSKLTDSCLQHITGLKNLC 578

Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
            L +  +KVTD+G+          +L L+  P   +CL  LS         LN+  +++ 
Sbjct: 579 FLSLDQTKVTDAGM----------VLYLQSVP---SCLSQLS---------LNQTAVTET 616

Query: 244 GCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
                 + +  L++L++   ++ D  L  L  +++L++LNLD  G+ +  L +L     L
Sbjct: 617 TLAVLPTSVPQLRLLSIKQTKVKD--LTALAAMSSLQTLNLDGTGVTEASLEHLATHPAL 674

Query: 303 KCLELSDTQV--GSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DAR 358
             L L    V  GS  L+ +SGL  L  I L     ++D  L  L+ L+ L  L+L D  
Sbjct: 675 TSLTLVGIPVADGSHALQIISGL-KLTRITLPGRHSVTDSGLSFLSRLTLLSELDLTDYT 733

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH-IK 417
           QITD G++ L++LT L  L L   ++TD+G   LR  + L+ L +    +T  GV   I 
Sbjct: 734 QITDQGVSHLSTLTRLKKLSLSNTQVTDAGLPSLRCMQELQELCLDRTAVTSRGVADLIT 793

Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGL---TGLVSLNVSNSRITSAGLRHLNHAR 469
            L  L +L L+ +  + D  +    GL   + LV LN+S +RIT  GL++L   R
Sbjct: 794 CLPHLQVLGLA-STQVGDNVVR--KGLIRCSQLVKLNLSRTRITDHGLKYLKQMR 845



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 92/289 (31%), Positives = 149/289 (51%), Gaps = 22/289 (7%)

Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDS-----------LSALGSLFYLNL-NRCQLSDDG 244
           +++ + L   TL    GCP+    L+S           L A  +L +L+L N   ++D G
Sbjct: 483 MSHERLLHPRTLELFFGCPIQKFVLNSYPYSTNELLRQLRAFTALKHLSLVNSPLITDSG 542

Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV-NLTGLCN- 301
               S +  L+ LNL   +++TD CL H+ GL NL  L+LD   + D G+V  L  + + 
Sbjct: 543 LCILSTLVKLQYLNLASCSKLTDSCLQHITGLKNLCFLSLDQTKVTDAGMVLYLQSVPSC 602

Query: 302 LKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
           L  L L+ T V  + L  L + +  L  +++  T + D  L  LA +SSL++LNLD   +
Sbjct: 603 LSQLSLNQTAVTETTLAVLPTSVPQLRLLSIKQTKVKD--LTALAAMSSLQTLNLDGTGV 660

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG---LTDAGVKHIK 417
           T+  L  L +   LT L L G  + D G+  L+    L+   I   G   +TD+G+  + 
Sbjct: 661 TEASLEHLATHPALTSLTLVGIPVAD-GSHALQIISGLKLTRITLPGRHSVTDSGLSFLS 719

Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
            L+ L+ L+L+    +TD+ +  +S LT L  L++SN+++T AGL  L 
Sbjct: 720 RLTLLSELDLTDYTQITDQGVSHLSTLTRLKKLSLSNTQVTDAGLPSLR 768


>gi|406830019|ref|ZP_11089613.1| hypothetical protein SpalD1_00225 [Schlesneria paludicola DSM
           18645]
          Length = 509

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 179/371 (48%), Gaps = 35/371 (9%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           +L +++L+G+D+TD+    L+D  +L  LD     +ISD  +E L  L NL  L +    
Sbjct: 119 ALGTLNLNGTDITDADFSELRDLRHLSLLDLG-GTRISDASIEGLSQLKNLKEL-WIDGT 176

Query: 118 AITAQGMKAFA-GLIN-LVKLD-------LERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
            IT  G+++    L N +V  D       +E    + GG+   + +     + + +   +
Sbjct: 177 EITDAGVQSLKEALPNAIVGKDAPDESQAIETIRSLGGGVTRDEAVAGRPVIEVGFGGFL 236

Query: 169 TDSDMKP-------LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
              D+ P       LS +   +SL+    ++  SG A              G   TA   
Sbjct: 237 ---DVGPKTTIEEVLSAVKQFRSLR--TLQLGSSGDAS------------HGLLATADGW 279

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
             +S L +L  L +   +++D G ++ S++  L+ L L   +IT++ +  +  L NL +L
Sbjct: 280 KEISELNNLTRLTIIGIEITDAGLKEISRLSQLESLRLINLKITNQGMKEIGKLKNLTNL 339

Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
            L    + D GL  L GL  L  L L++  +   GLR +  LT+L  +++  T I+D  L
Sbjct: 340 GLFDVQLTDAGLNQLRGLQRLDTLSLNNNPISDEGLRQVGALTSLTFLSVPSTEITDNGL 399

Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
           + L GLSSLK+L L + +I+D GL  L  L  L  LDL G R+T +G   LR  ++L SL
Sbjct: 400 KGLRGLSSLKNLCLASTRISDDGLKGLIGLNNLEQLDLAGTRVTGTGVGPLRELESLHSL 459

Query: 402 EICGGGLTDAG 412
            +    ++D G
Sbjct: 460 GLSNTQISDEG 470



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 150/306 (49%), Gaps = 41/306 (13%)

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           I+D+ ++ LS L NLK L I  +++TD+G+  LK      ++  +  P  +  ++++ +L
Sbjct: 154 ISDASIEGLSQLKNLKELWIDGTEITDAGVQSLKEALPNAIVG-KDAPDESQAIETIRSL 212

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD--------ECLVHLKGLTNLE 279
           G               G  +   +    V+ +GF    D        E L  +K   +L 
Sbjct: 213 GG--------------GVTRDEAVAGRPVIEVGFGGFLDVGPKTTIEEVLSAVKQFRSLR 258

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
           +L L S G    GL+                   + G + +S L NL  + +    I+D 
Sbjct: 259 TLQLGSSGDASHGLL-----------------ATADGWKEISELNNLTRLTIIGIEITDA 301

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L++++ LS L+SL L   +IT+ G+  +  L  LT+L LF  ++TD+G   LR  + L 
Sbjct: 302 GLKEISRLSQLESLRLINLKITNQGMKEIGKLKNLTNLGLFDVQLTDAGLNQLRGLQRLD 361

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
           +L +    ++D G++ +  L+SLT L++  +  +TD  L+ + GL+ L +L ++++RI+ 
Sbjct: 362 TLSLNNNPISDEGLRQVGALTSLTFLSVP-STEITDNGLKGLRGLSSLKNLCLASTRISD 420

Query: 460 AGLRHL 465
            GL+ L
Sbjct: 421 DGLKGL 426



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 123/269 (45%), Gaps = 28/269 (10%)

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
           L S +ALG+L   NLN   ++D    +   +  L +L+LG   I+D  +  L  L NL+ 
Sbjct: 114 LKSFNALGTL---NLNGTDITDADFSELRDLRHLSLLDLGGTRISDASIEGLSQLKNLKE 170

Query: 281 LNLDSCGIGDEGLVNLT-GLCN-LKCLELSDTQVGSSGLRHL-SGLTNLES------INL 331
           L +D   I D G+ +L   L N +   +  D       +R L  G+T  E+      I +
Sbjct: 171 LWIDGTEITDAGVQSLKEALPNAIVGKDAPDESQAIETIRSLGGGVTRDEAVAGRPVIEV 230

Query: 332 SFTGISD--------GSLRKLAGLSSLKSLNL----DARQ---ITDTGLAALTSLTGLTH 376
            F G  D          L  +    SL++L L    DA      T  G   ++ L  LT 
Sbjct: 231 GFGGFLDVGPKTTIEEVLSAVKQFRSLRTLQLGSSGDASHGLLATADGWKEISELNNLTR 290

Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
           L + G  ITD+G   +     L SL +    +T+ G+K I  L +LT L L  +  LTD 
Sbjct: 291 LTIIGIEITDAGLKEISRLSQLESLRLINLKITNQGMKEIGKLKNLTNLGLF-DVQLTDA 349

Query: 437 TLELISGLTGLVSLNVSNSRITSAGLRHL 465
            L  + GL  L +L+++N+ I+  GLR +
Sbjct: 350 GLNQLRGLQRLDTLSLNNNPISDEGLRQV 378


>gi|325109499|ref|YP_004270567.1| hypothetical protein Plabr_2946 [Planctomyces brasiliensis DSM
           5305]
 gi|324969767|gb|ADY60545.1| leucine-rich repeat cysteine-containing subtype [Planctomyces
           brasiliensis DSM 5305]
          Length = 381

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 142/270 (52%), Gaps = 6/270 (2%)

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           ++   ++ L+ L  L+SL +  S   D  +  +    +L  L+L  CPV+ A L  L  L
Sbjct: 86  VSPEALEALAKLPKLRSLLLRESNAGDDALIAVGKCSQLENLDLRECPVSNAGLAHLVGL 145

Query: 228 GSLFYLNLN----RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
             L  L L+       + D G E  +K+  LKVL L F  I+ + L  LK LT+L  L L
Sbjct: 146 EKLKALRLSGQSGATTVDDGGMESVAKLPQLKVLALDFLWISGDGLQQLKPLTDLRELYL 205

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSL 341
            S  +GDE L  L+    L+ L +S  +Q+   G++ +S L+ LE +++S  + +S+  +
Sbjct: 206 ASTLVGDEDLKALSQFPELRKLRVSKLSQLSGQGIQEISQLSKLEELDVSEDSSLSNDDI 265

Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
             L+ L+ L  LNL    I+D G+  L  LT LT L+L   +++D+G + L+  K L+ L
Sbjct: 266 SSLSKLTKLTKLNLWRVPISDAGVEHLAPLTKLTWLNLDNTQLSDAGLSTLKEMKELKFL 325

Query: 402 EICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
            +    +++AG+  + +L SL  L +++  
Sbjct: 326 HLGSTQISNAGLPQLSELKSLDKLVVTRTA 355



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 94/293 (32%), Positives = 136/293 (46%), Gaps = 31/293 (10%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
             L S+ L  S+  D  LI +  CS L++LD   C  +S+ GL HL GL  L +L     
Sbjct: 98  PKLRSLLLRESNAGDDALIAVGKCSQLENLDLREC-PVSNAGLAHLVGLEKLKALRLSGQ 156

Query: 117 NAITAQ---GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
           +  T     GM++ A L  L  L L+       GL  LK L  L  L +     + D D+
Sbjct: 157 SGATTVDDGGMESVAKLPQLKVLALDFLWISGDGLQQLKPLTDLRELYLA-STLVGDEDL 215

Query: 174 KPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLDSLSALGSLF 231
           K LS    L+ L++S  S+++  GI  +  L KL  L++ E   ++   + SLS L  L 
Sbjct: 216 KALSQFPELRKLRVSKLSQLSGQGIQEISQLSKLEELDVSEDSSLSNDDISSLSKLTKLT 275

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
            LNL R  +SD G E                        HL  LT L  LNLD+  + D 
Sbjct: 276 KLNLWRVPISDAGVE------------------------HLAPLTKLTWLNLDNTQLSDA 311

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
           GL  L  +  LK L L  TQ+ ++GL  LS L +L+ + ++ T ++   + KL
Sbjct: 312 GLSTLKEMKELKFLHLGSTQISNAGLPQLSELKSLDKLVVTRTAVNQEGVDKL 364



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 111/225 (49%), Gaps = 7/225 (3%)

Query: 248 FSKIGSLKVLNLGF--NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
             K G  +++ + F   E++ E L  L  L  L SL L     GD+ L+ +     L+ L
Sbjct: 68  MRKNGDDQIIEVDFIGKEVSPEALEALAKLPKLRSLLLRESNAGDDALIAVGKCSQLENL 127

Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLS----FTGISDGSLRKLAGLSSLKSLNLDARQIT 361
           +L +  V ++GL HL GL  L+++ LS     T + DG +  +A L  LK L LD   I+
Sbjct: 128 DLRECPVSNAGLAHLVGLEKLKALRLSGQSGATTVDDGGMESVAKLPQLKVLALDFLWIS 187

Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLS 420
             GL  L  LT L  L L    + D     L  F  LR L +     L+  G++ I  LS
Sbjct: 188 GDGLQQLKPLTDLRELYLASTLVGDEDLKALSQFPELRKLRVSKLSQLSGQGIQEISQLS 247

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
            L  L++S++ +L++  +  +S LT L  LN+    I+ AG+ HL
Sbjct: 248 KLEELDVSEDSSLSNDDISSLSKLTKLTKLNLWRVPISDAGVEHL 292



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 129/263 (49%), Gaps = 7/263 (2%)

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
           G  V+   L++L+ L  L  L L      DD      K   L+ L+L    +++  L HL
Sbjct: 83  GKEVSPEALEALAKLPKLRSLLLRESNAGDDALIAVGKCSQLENLDLRECPVSNAGLAHL 142

Query: 273 KGLTNLESLNLD----SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
            GL  L++L L     +  + D G+ ++  L  LK L L    +   GL+ L  LT+L  
Sbjct: 143 VGLEKLKALRLSGQSGATTVDDGGMESVAKLPQLKVLALDFLWISGDGLQQLKPLTDLRE 202

Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITD 386
           + L+ T + D  L+ L+    L+ L +    Q++  G+  ++ L+ L  LD+   + +++
Sbjct: 203 LYLASTLVGDEDLKALSQFPELRKLRVSKLSQLSGQGIQEISQLSKLEELDVSEDSSLSN 262

Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
              + L     L  L +    ++DAGV+H+  L+ LT LNL  N  L+D  L  +  +  
Sbjct: 263 DDISSLSKLTKLTKLNLWRVPISDAGVEHLAPLTKLTWLNLD-NTQLSDAGLSTLKEMKE 321

Query: 447 LVSLNVSNSRITSAGLRHLNHAR 469
           L  L++ +++I++AGL  L+  +
Sbjct: 322 LKFLHLGSTQISNAGLPQLSELK 344



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 126/260 (48%), Gaps = 12/260 (4%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF---NFCIQISDGGLEHLRGLSNLTSLSF 113
           S L ++DL    V+++GL HL     L++L     +    + DGG+E +  L  L  L+ 
Sbjct: 122 SQLENLDLRECPVSNAGLAHLVGLEKLKALRLSGQSGATTVDDGGMESVAKLPQLKVLAL 181

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
                I+  G++    L +L +L L         L  L    +L  L +   + ++   +
Sbjct: 182 DF-LWISGDGLQQLKPLTDLRELYLASTLVGDEDLKALSQFPELRKLRVSKLSQLSGQGI 240

Query: 174 KPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           + +S L+ L+ L +S  S +++  I+ L  L KLT LNL   P++ A ++ L+ L  L +
Sbjct: 241 QEISQLSKLEELDVSEDSSLSNDDISSLSKLTKLTKLNLWRVPISDAGVEHLAPLTKLTW 300

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           LNL+  QLSD G     ++  LK L+LG  +I++  L  L  L +L+ L +    +  EG
Sbjct: 301 LNLDNTQLSDAGLSTLKEMKELKFLHLGSTQISNAGLPQLSELKSLDKLVVTRTAVNQEG 360

Query: 293 LVNLTGLCNLKCLELSDTQV 312
           +  L         EL DT++
Sbjct: 361 VDKLQP-------ELPDTEI 373


>gi|290999671|ref|XP_002682403.1| LRR_RI domain-containing protein [Naegleria gruberi]
 gi|284096030|gb|EFC49659.1| LRR_RI domain-containing protein [Naegleria gruberi]
          Length = 403

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 149/301 (49%), Gaps = 1/301 (0%)

Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
           + L+ ++SL      C  +  +K +S L  L  L I  S + D G+ Y+  L++LT L++
Sbjct: 104 RKLILMKSLTKLIIRCDDEEGVKYISELKQLTKLTIYGSHIGDEGVRYISELKQLTYLSI 163

Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
               ++      L  L  L  L +   ++ ++G +  S++  L  L++  N+I  E   +
Sbjct: 164 PSNGISEYGAKHLRELKQLTTLIIFCNRVGNEGSKYISELKQLTTLSIDENDIGAEGAKY 223

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
           L  LT L  L++ S  +GDEG   ++ +  L  L ++  ++G+ G + +S L  L+++++
Sbjct: 224 LSELTQLTCLDISSNWLGDEGAKYVSKMKQLTTLHINSNRIGNEGSKFISSLNQLKNLDI 283

Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
               I D  L     L+ LKSL+L   +I D G   L+ L  L +LD+    + D GA  
Sbjct: 284 CKNDIGDEGLEYFGQLAQLKSLDLSYNRIGDEGAQYLSELKQLIYLDIKTNHLGDKGAMP 343

Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
           +   K L  L I    + + G K+I +L  LT L++  N  +T++  +  + +  L+ L 
Sbjct: 344 IGELKKLIYLYINNNKIRNEGAKYISELKQLTKLDIRNNF-ITEEGTKYFTEMKQLIDLT 402

Query: 452 V 452
           +
Sbjct: 403 I 403


>gi|46445968|ref|YP_007333.1| hypothetical protein pc0334 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399609|emb|CAF23058.1| hypothetical protein pc0334 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 616

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 98/295 (33%), Positives = 149/295 (50%), Gaps = 48/295 (16%)

Query: 11  FNELVYSRCLTEVSLEAFRDCALQDLCLGQY-PGVNDKWMDVIASQGSSLLSVDLSG--S 67
           F+E  Y   LT++ L A +   L D  L    P VN             L  ++LSG  S
Sbjct: 312 FSEYAY---LTDIHLLALKSWELTDARLAHLAPLVN-------------LRHLNLSGDMS 355

Query: 68  DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           ++TD+GL HL    NLQ L+ ++C +++D GL HLR L NL  L+    N +T  G+   
Sbjct: 356 NLTDAGLAHLTPLVNLQHLNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGLAHL 415

Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNC-ITDSDMKPLSGLTNLKSL 185
             L+NL  L+L +C ++   GL +L  L+ L+ L++ WC    T + +  L+ L +L+ L
Sbjct: 416 RPLVNLQHLNLSKCPKLTDAGLAHLTPLVNLQHLDLSWCPLNFTGAGLAYLAPLIDLQYL 475

Query: 186 QI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDD 243
            +  C+++TD G+ +L  L  L  L+L GC  +T A L  L++L +L +LNL RC     
Sbjct: 476 NLCCCNELTDIGLMHLTPLVNLQHLDLSGCDNLTDAGLMHLTSLVNLQHLNL-RC----- 529

Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD--SCGIGDEGLVNL 296
            C+  +K G                L+HL  L NL  L L   S  + + GL +L
Sbjct: 530 -CDNLTKTG----------------LMHLTSLVNLRQLVLSWYSPDLNEAGLAHL 567



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 101/283 (35%), Positives = 145/283 (51%), Gaps = 30/283 (10%)

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
           L + E +   + N I   +    + LT++  L +   ++TD+ +A+L  L  L  LNL G
Sbjct: 293 LTEFEKIINYFANAIEGLNFSEYAYLTDIHLLALKSWELTDARLAHLAPLVNLRHLNLSG 352

Query: 214 --CPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLG-FNEITDECL 269
               +T A L  L+ L +L +LNL+ C +L+DDG      + +L+ LNL   N++TD  L
Sbjct: 353 DMSNLTDAGLAHLTPLVNLQHLNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGL 412

Query: 270 VHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
            HL+ L NL+ LNL  C  + D GL +LT L NL+ L+LS                    
Sbjct: 413 AHLRPLVNLQHLNLSKCPKLTDAGLAHLTPLVNLQHLDLS-------------------W 453

Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA-RITD 386
             L+FTG     L  LA L  L+ LNL    ++TD GL  LT L  L HLDL G   +TD
Sbjct: 454 CPLNFTG---AGLAYLAPLIDLQYLNLCCCNELTDIGLMHLTPLVNLQHLDLSGCDNLTD 510

Query: 387 SGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLS 428
           +G  +L +  NL+ L + C   LT  G+ H+  L +L  L LS
Sbjct: 511 AGLMHLTSLVNLQHLNLRCCDNLTKTGLMHLTSLVNLRQLVLS 553



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 87/228 (38%), Positives = 120/228 (52%), Gaps = 9/228 (3%)

Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL--DSCGIGDEGLVNLTGLCNLKC 304
           +++ +  + +L L   E+TD  L HL  L NL  LNL  D   + D GL +LT L NL+ 
Sbjct: 314 EYAYLTDIHLLALKSWELTDARLAHLAPLVNLRHLNLSGDMSNLTDAGLAHLTPLVNLQH 373

Query: 305 LELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQIT 361
           L L    ++   GL HL  L NL+ +NL     ++D  L  L  L +L+ LNL    ++T
Sbjct: 374 LNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGLAHLRPLVNLQHLNLSKCPKLT 433

Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGA--AYLRNFKNLRSLEICG-GGLTDAGVKHIKD 418
           D GLA LT L  L HLDL    +  +GA  AYL    +L+ L +C    LTD G+ H+  
Sbjct: 434 DAGLAHLTPLVNLQHLDLSWCPLNFTGAGLAYLAPLIDLQYLNLCCCNELTDIGLMHLTP 493

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS-NSRITSAGLRHL 465
           L +L  L+LS   NLTD  L  ++ L  L  LN+     +T  GL HL
Sbjct: 494 LVNLQHLDLSGCDNLTDAGLMHLTSLVNLQHLNLRCCDNLTKTGLMHL 541



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 102/284 (35%), Positives = 142/284 (50%), Gaps = 42/284 (14%)

Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL--NRCQLSDDGCEKFSKIG 252
           S  AYL  +    LL L+   +T A L  L+ L +L +LNL  +   L+D G    + + 
Sbjct: 313 SEYAYLTDIH---LLALKSWELTDARLAHLAPLVNLRHLNLSGDMSNLTDAGLAHLTPLV 369

Query: 253 SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD- 309
           +L+ LNL + +++TD+ L HL+ L NL+ LNL  C  + D GL +L  L NL+ L LS  
Sbjct: 370 NLQHLNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGLAHLRPLVNLQHLNLSKC 429

Query: 310 TQVGSSGLRHLSGLTNLESINLS-----FTGISDGSLRKLAGLSSLKSLNLDA-RQITDT 363
            ++  +GL HL+ L NL+ ++LS     FTG     L  LA L  L+ LNL    ++TD 
Sbjct: 430 PKLTDAGLAHLTPLVNLQHLDLSWCPLNFTG---AGLAYLAPLIDLQYLNLCCCNELTDI 486

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
           GL  LT L  L HLDL G                          LTDAG+ H+  L +L 
Sbjct: 487 GLMHLTPLVNLQHLDLSGC-----------------------DNLTDAGLMHLTSLVNLQ 523

Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVS--NSRITSAGLRHL 465
            LNL    NLT   L  ++ L  L  L +S  +  +  AGL HL
Sbjct: 524 HLNLRCCDNLTKTGLMHLTSLVNLRQLVLSWYSPDLNEAGLAHL 567



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 82/159 (51%), Gaps = 5/159 (3%)

Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
           V SS L   S LT  E I   F    +G +  + A L+ +  L L + ++TD  LA L  
Sbjct: 282 VVSSLLNQASHLTEFEKIINYFANAIEGLNFSEYAYLTDIHLLALKSWELTDARLAHLAP 341

Query: 371 LTGLTHLDLFG--ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
           L  L HL+L G  + +TD+G A+L    NL+ L +     LTD G+ H++ L +L  LNL
Sbjct: 342 LVNLRHLNLSGDMSNLTDAGLAHLTPLVNLQHLNLHWCDKLTDDGLAHLRSLVNLQHLNL 401

Query: 428 SQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHL 465
                LTD  L  +  L  L  LN+S   ++T AGL HL
Sbjct: 402 HCCNKLTDAGLAHLRPLVNLQHLNLSKCPKLTDAGLAHL 440


>gi|290970785|ref|XP_002668255.1| predicted protein [Naegleria gruberi]
 gi|284081550|gb|EFC35511.1| predicted protein [Naegleria gruberi]
          Length = 295

 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 146/291 (50%), Gaps = 1/291 (0%)

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           +  L SL I+ + + D G+  +  +++LT L++    +       +S +  L  L+++  
Sbjct: 1   MKQLTSLNINYNNIGDEGVKLISEMKQLTSLDINYNNIGVEGAKYISEMKQLTSLDISDN 60

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
            +  +G +  S++  L  LN+  NEI  E   ++  +  L SL+++   IG EG   ++ 
Sbjct: 61  NIGVEGVKLISEMKQLTSLNIRINEIGVEGAKYISEMKQLTSLDINCNNIGVEGAKYISE 120

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
           +  L  L++S   +G  G + +S +  L S+N+    I D   + ++ +  L SLN+   
Sbjct: 121 MKQLTSLDISWNNIGVEGAKLISEMKQLTSLNIRRNEIGDEGAKYISEMKQLTSLNISDN 180

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
            I   G   ++ +  LT L++    I D GA Y+   K L SL I    + D G K+I +
Sbjct: 181 NIGVEGAKLISEMKQLTSLNINWNEIGDEGAKYISEMKQLTSLNISWNKIGDEGAKYISE 240

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           +  LT L+++ N  +  +  +LIS +  L SLN++++ I   G ++L+  +
Sbjct: 241 MKQLTSLDINWN-KIGVEGAKLISEMKQLTSLNINDNNIGVEGAKYLSEMK 290



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 140/277 (50%), Gaps = 1/277 (0%)

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
           + +L SLNI + N I D  +K +S +  L SL I+ + +   G  Y+  +++LT L++  
Sbjct: 1   MKQLTSLNINYNN-IGDEGVKLISEMKQLTSLDINYNNIGVEGAKYISEMKQLTSLDISD 59

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
             +    +  +S +  L  LN+   ++  +G +  S++  L  L++  N I  E   ++ 
Sbjct: 60  NNIGVEGVKLISEMKQLTSLNIRINEIGVEGAKYISEMKQLTSLDINCNNIGVEGAKYIS 119

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
            +  L SL++    IG EG   ++ +  L  L +   ++G  G +++S +  L S+N+S 
Sbjct: 120 EMKQLTSLDISWNNIGVEGAKLISEMKQLTSLNIRRNEIGDEGAKYISEMKQLTSLNISD 179

Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
             I     + ++ +  L SLN++  +I D G   ++ +  LT L++   +I D GA Y+ 
Sbjct: 180 NNIGVEGAKLISEMKQLTSLNINWNEIGDEGAKYISEMKQLTSLNISWNKIGDEGAKYIS 239

Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
             K L SL+I    +   G K I ++  LT LN++ N
Sbjct: 240 EMKQLTSLDINWNKIGVEGAKLISEMKQLTSLNINDN 276



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 132/271 (48%), Gaps = 1/271 (0%)

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
           + +L SL+I + N   +   K +S +  L SL IS + +   G+  +  +++LT LN+  
Sbjct: 25  MKQLTSLDINYNNIGVEG-AKYISEMKQLTSLDISDNNIGVEGVKLISEMKQLTSLNIRI 83

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
             +       +S +  L  L++N   +  +G +  S++  L  L++ +N I  E    + 
Sbjct: 84  NEIGVEGAKYISEMKQLTSLDINCNNIGVEGAKYISEMKQLTSLDISWNNIGVEGAKLIS 143

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
            +  L SLN+    IGDEG   ++ +  L  L +SD  +G  G + +S +  L S+N+++
Sbjct: 144 EMKQLTSLNIRRNEIGDEGAKYISEMKQLTSLNISDNNIGVEGAKLISEMKQLTSLNINW 203

Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
             I D   + ++ +  L SLN+   +I D G   ++ +  LT LD+   +I   GA  + 
Sbjct: 204 NEIGDEGAKYISEMKQLTSLNISWNKIGDEGAKYISEMKQLTSLDINWNKIGVEGAKLIS 263

Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
             K L SL I    +   G K++ ++   T+
Sbjct: 264 EMKQLTSLNINDNNIGVEGAKYLSEMKRKTI 294



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 145/287 (50%), Gaps = 12/287 (4%)

Query: 41  YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF---NFCIQISDG 97
           Y  + D+ + +I S+   L S+D++ +++   G  ++ +   L SLD    N  ++    
Sbjct: 11  YNNIGDEGVKLI-SEMKQLTSLDINYNNIGVEGAKYISEMKQLTSLDISDNNIGVE---- 65

Query: 98  GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMK 156
           G++ +  +  LTSL+ R  N I  +G K  + +  L  LD+  C  I   G   +  + +
Sbjct: 66  GVKLISEMKQLTSLNIRI-NEIGVEGAKYISEMKQLTSLDI-NCNNIGVEGAKYISEMKQ 123

Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
           L SL+I W N   +   K +S +  L SL I  +++ D G  Y+  +++LT LN+    +
Sbjct: 124 LTSLDISWNNIGVEG-AKLISEMKQLTSLNIRRNEIGDEGAKYISEMKQLTSLNISDNNI 182

Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
                  +S +  L  LN+N  ++ D+G +  S++  L  LN+ +N+I DE   ++  + 
Sbjct: 183 GVEGAKLISEMKQLTSLNINWNEIGDEGAKYISEMKQLTSLNISWNKIGDEGAKYISEMK 242

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
            L SL+++   IG EG   ++ +  L  L ++D  +G  G ++LS +
Sbjct: 243 QLTSLDINWNKIGVEGAKLISEMKQLTSLNINDNNIGVEGAKYLSEM 289


>gi|406834160|ref|ZP_11093754.1| ribonuclease inhibitor [Schlesneria paludicola DSM 18645]
          Length = 390

 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 147/311 (47%), Gaps = 30/311 (9%)

Query: 36  LCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQIS 95
           + L Q P  +D     +  Q   L+ + L  + +TD+GL +L     LQ LD +   +IS
Sbjct: 95  ITLDQSPIGDDDL--AVLKQTPQLVGLSLRATKITDAGLKYLSSVPRLQKLDLSRT-KIS 151

Query: 96  DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
           D GLEHL+                          L+NL +L +   +    G   L GL 
Sbjct: 152 DAGLEHLQ-------------------------TLVNLCELTIAETSVTDAGTAKLAGLK 186

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
            L  LN+   N +TD+ +K +S + NL +L +    +TD G+A LK  Q LT L+L+G P
Sbjct: 187 NLRVLNVSKTN-VTDTSLKVISEIPNLNTLILDGCNLTDVGLASLKDCQSLTFLSLDGIP 245

Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
           +T + L  L  +  L YL L   +      +    + +LK+L+L    + D  +  +  +
Sbjct: 246 LTGSFLKELKGI-PLEYLTLANSKCDGTTFKDVGTLKNLKMLSLENCPVEDASIASIAAI 304

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
            +LE+L+LD+  I ++ +V L  + +L  L ++ T + +  LR L    NL+ +    T 
Sbjct: 305 ASLETLSLDNTKITEQAIVELKDMPSLVSLSINSTPISAEELRQLKATPNLKLVKAHNTK 364

Query: 336 ISDGSLRKLAG 346
           ++ G +  LA 
Sbjct: 365 VTRGDVDALAA 375



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 122/236 (51%), Gaps = 6/236 (2%)

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           + L++  + DD      +   L  L+L   +ITD  L +L  +  L+ L+L    I D G
Sbjct: 95  ITLDQSPIGDDDLAVLKQTPQLVGLSLRATKITDAGLKYLSSVPRLQKLDLSRTKISDAG 154

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
           L +L  L NL  L +++T V  +G   L+GL NL  +N+S T ++D SL+ ++ + +L +
Sbjct: 155 LEHLQTLVNLCELTIAETSVTDAGTAKLAGLKNLRVLNVSKTNVTDTSLKVISEIPNLNT 214

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK--NLRSLEICGGGLTD 410
           L LD   +TD GLA+L     LT L L G  +T S   +L+  K   L  L +       
Sbjct: 215 LILDGCNLTDVGLASLKDCQSLTFLSLDGIPLTGS---FLKELKGIPLEYLTLANSKCDG 271

Query: 411 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
              K +  L +L +L+L +NC + D ++  I+ +  L +L++ N++IT   +  L 
Sbjct: 272 TTFKDVGTLKNLKMLSL-ENCPVEDASIASIAAIASLETLSLDNTKITEQAIVELK 326



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 166/348 (47%), Gaps = 25/348 (7%)

Query: 87  DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG 146
           D++  I++ D           + SL  R + A+ A  +     L ++V  D +   + +G
Sbjct: 44  DYSPVIEVKD----------RVNSLGGRAHMAVAAPAV-----LQSIVGKDWDGWDQFYG 88

Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
           G       ++++ + +   + I D D+  L     L  L +  +K+TD+G+ YL  + +L
Sbjct: 89  G-------VEVDQITLDQ-SPIGDDDLAVLKQTPQLVGLSLRATKITDAGLKYLSSVPRL 140

Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
             L+L    ++ A L+ L  L +L  L +    ++D G  K + + +L+VLN+    +TD
Sbjct: 141 QKLDLSRTKISDAGLEHLQTLVNLCELTIAETSVTDAGTAKLAGLKNLRVLNVSKTNVTD 200

Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
             L  +  + NL +L LD C + D GL +L    +L  L L    +  S L+ L G+  L
Sbjct: 201 TSLKVISEIPNLNTLILDGCNLTDVGLASLKDCQSLTFLSLDGIPLTGSFLKELKGIP-L 259

Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
           E + L+ +     + + +  L +LK L+L+   + D  +A++ ++  L  L L   +IT+
Sbjct: 260 EYLTLANSKCDGTTFKDVGTLKNLKMLSLENCPVEDASIASIAAIASLETLSLDNTKITE 319

Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
                L++  +L SL I    ++   ++ +K   +L L+  + N  +T
Sbjct: 320 QAIVELKDMPSLVSLSINSTPISAEELRQLKATPNLKLVK-AHNTKVT 366



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 128/258 (49%), Gaps = 2/258 (0%)

Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
           + L+  P+    L  L     L  L+L   +++D G +  S +  L+ L+L   +I+D  
Sbjct: 95  ITLDQSPIGDDDLAVLKQTPQLVGLSLRATKITDAGLKYLSSVPRLQKLDLSRTKISDAG 154

Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
           L HL+ L NL  L +    + D G   L GL NL+ L +S T V  + L+ +S + NL +
Sbjct: 155 LEHLQTLVNLCELTIAETSVTDAGTAKLAGLKNLRVLNVSKTNVTDTSLKVISEIPNLNT 214

Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
           + L    ++D  L  L    SL  L+LD   +T + L  L  +  L +L L  ++   + 
Sbjct: 215 LILDGCNLTDVGLASLKDCQSLTFLSLDGIPLTGSFLKELKGIP-LEYLTLANSKCDGTT 273

Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
              +   KNL+ L +    + DA +  I  ++SL  L+L  N  +T++ +  +  +  LV
Sbjct: 274 FKDVGTLKNLKMLSLENCPVEDASIASIAAIASLETLSL-DNTKITEQAIVELKDMPSLV 332

Query: 449 SLNVSNSRITSAGLRHLN 466
           SL+++++ I++  LR L 
Sbjct: 333 SLSINSTPISAEELRQLK 350


>gi|325106627|ref|YP_004267695.1| hypothetical protein Plabr_0042 [Planctomyces brasiliensis DSM
           5305]
 gi|324966895|gb|ADY57673.1| leucine-rich repeat-containing protein [Planctomyces brasiliensis
           DSM 5305]
          Length = 526

 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 171/398 (42%), Gaps = 66/398 (16%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+   L +  ++ + VTD+GL ++K    L+S+D N   ++S+ GL HL GL +L  ++ 
Sbjct: 117 SKLEQLRTFAIAKTRVTDNGLRYVKAFRFLKSIDLNQN-KLSEAGLCHLEGLVSLREVNL 175

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
           RR+ ++    +K    L+ L KLDL      H GL  L    +L SL +   N I D  +
Sbjct: 176 RRS-SVNGAALKWLQRLVLLEKLDLRNTNFTHHGLSFLTYFRRLRSLKLG-GNRIEDDGL 233

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF-- 231
            PL     L+SL +S + ++D  +  L  L +L  L + G  V+   L  L+++ +L   
Sbjct: 234 FPLLQFPRLESLDLSGTPISDQAMKTLAQLPRLKRLYVPGTAVSDEGLQLLTSVSTLIAL 293

Query: 232 ------------------------------------------------YLNLNR------ 237
                                                           +L L+R      
Sbjct: 294 DVRKTAVTPSGVQQLEQHSPGLKIKSDAADLPSSHVIRSRDVLQMHGCHLTLSRSGDVIA 353

Query: 238 CQLSDDGCEK---FSKI---GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
           CQ  +D       FS +    SLK L L    +  E L  LK ++ L+SL L  C    E
Sbjct: 354 CQAGEDASPPIHWFSALESFSSLKSLELNRLALDGEQLQFLKNMSQLQSLALKQCTFPPE 413

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
            L  L  L  L  L+L DT V    L+ L  L +L ++ LS TG++   L  L+    L+
Sbjct: 414 ALSVLKSLNRLAWLDLRDTPVSDESLQALGELPSLSNLCLSRTGVTATGLESLSSAPLLR 473

Query: 352 SLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
            L + +  QI D  + AL     L HLD+ G  IT+ G
Sbjct: 474 DLVIKECGQIGDPAVLALEKFKNLKHLDIRGTNITEQG 511



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 182/421 (43%), Gaps = 66/421 (15%)

Query: 55  QGSSLLSVDLSGSD------------------------VTDSGLIHLKDCSNLQSLDFNF 90
           Q  SL  +DLSG+                         VTD+GL ++K    L+S+D N 
Sbjct: 94  QLRSLQELDLSGTSLDDIGMEKLSKLEQLRTFAIAKTRVTDNGLRYVKAFRFLKSIDLNQ 153

Query: 91  CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
             ++S+ GL HL GL +L  ++ RR +++    +K    L+ L KLDL      H GL  
Sbjct: 154 N-KLSEAGLCHLEGLVSLREVNLRR-SSVNGAALKWLQRLVLLEKLDLRNTNFTHHGLSF 211

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
           L    +L SL +   N I D  + PL     L+SL +S + ++D  +  L  L +L  L 
Sbjct: 212 LTYFRRLRSLKLG-GNRIEDDGLFPLLQFPRLESLDLSGTPISDQAMKTLAQLPRLKRLY 270

Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-------------------I 251
           + G  V+   L  L+++ +L  L++ +  ++  G ++  +                   I
Sbjct: 271 VPGTAVSDEGLQLLTSVSTLIALDVRKTAVTPSGVQQLEQHSPGLKIKSDAADLPSSHVI 330

Query: 252 GSLKVLNLGFNEIT---------------DECLVH----LKGLTNLESLNLDSCGIGDEG 292
            S  VL +    +T                   +H    L+  ++L+SL L+   +  E 
Sbjct: 331 RSRDVLQMHGCHLTLSRSGDVIACQAGEDASPPIHWFSALESFSSLKSLELNRLALDGEQ 390

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
           L  L  +  L+ L L         L  L  L  L  ++L  T +SD SL+ L  L SL +
Sbjct: 391 LQFLKNMSQLQSLALKQCTFPPEALSVLKSLNRLAWLDLRDTPVSDESLQALGELPSLSN 450

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
           L L    +T TGL +L+S   L  L +    +I D     L  FKNL+ L+I G  +T+ 
Sbjct: 451 LCLSRTGVTATGLESLSSAPLLRDLVIKECGQIGDPAVLALEKFKNLKHLDIRGTNITEQ 510

Query: 412 G 412
           G
Sbjct: 511 G 511



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 134/284 (47%), Gaps = 1/284 (0%)

Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
           +L +S  +   S   +    + L  L+L  CP  +  L       +L  L    C +  D
Sbjct: 28  ALDLSAVRWDQSPEDFPALPENLQELDLTNCPCGSKILAQPEFQETLLKLKCQNCDIDFD 87

Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
             E   ++ SL+ L+L    + D  +  L  L  L +  +    + D GL  +     LK
Sbjct: 88  TLELIGQLRSLQELDLSGTSLDDIGMEKLSKLEQLRTFAIAKTRVTDNGLRYVKAFRFLK 147

Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
            ++L+  ++  +GL HL GL +L  +NL  + ++  +L+ L  L  L+ L+L     T  
Sbjct: 148 SIDLNQNKLSEAGLCHLEGLVSLREVNLRRSSVNGAALKWLQRLVLLEKLDLRNTNFTHH 207

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
           GL+ LT    L  L L G RI D G   L  F  L SL++ G  ++D  +K +  L  L 
Sbjct: 208 GLSFLTYFRRLRSLKLGGNRIEDDGLFPLLQFPRLESLDLSGTPISDQAMKTLAQLPRLK 267

Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNH 467
            L +     ++D+ L+L++ ++ L++L+V  + +T +G++ L  
Sbjct: 268 RLYVP-GTAVSDEGLQLLTSVSTLIALDVRKTAVTPSGVQQLEQ 310



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 86/275 (31%), Positives = 131/275 (47%), Gaps = 4/275 (1%)

Query: 122 QGMKAFAGLI-NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG-L 179
           Q  + F  L  NL +LDL  C    G  +  +   +   L +K  NC  D D   L G L
Sbjct: 38  QSPEDFPALPENLQELDLTNCP--CGSKILAQPEFQETLLKLKCQNCDIDFDTLELIGQL 95

Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
            +L+ L +S + + D G+  L  L++L    +    VT   L  + A   L  ++LN+ +
Sbjct: 96  RSLQELDLSGTSLDDIGMEKLSKLEQLRTFAIAKTRVTDNGLRYVKAFRFLKSIDLNQNK 155

Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
           LS+ G      + SL+ +NL  + +    L  L+ L  LE L+L +      GL  LT  
Sbjct: 156 LSEAGLCHLEGLVSLREVNLRRSSVNGAALKWLQRLVLLEKLDLRNTNFTHHGLSFLTYF 215

Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
             L+ L+L   ++   GL  L     LES++LS T ISD +++ LA L  LK L +    
Sbjct: 216 RRLRSLKLGGNRIEDDGLFPLLQFPRLESLDLSGTPISDQAMKTLAQLPRLKRLYVPGTA 275

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
           ++D GL  LTS++ L  LD+    +T SG   L  
Sbjct: 276 VSDEGLQLLTSVSTLIALDVRKTAVTPSGVQQLEQ 310



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 160/350 (45%), Gaps = 16/350 (4%)

Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
           L +L +LDL   +    G+  L  L +L +  I     +TD+ ++ +     LKS+ ++ 
Sbjct: 95  LRSLQELDLSGTSLDDIGMEKLSKLEQLRTFAIAKTR-VTDNGLRYVKAFRFLKSIDLNQ 153

Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
           +K++++G+ +L+GL  L  +NL    V  A L  L  L  L  L+L     +  G    +
Sbjct: 154 NKLSEAGLCHLEGLVSLREVNLRRSSVNGAALKWLQRLVLLEKLDLRNTNFTHHGLSFLT 213

Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
               L+ L LG N I D+ L  L     LESL+L    I D+ +  L  L  LK L +  
Sbjct: 214 YFRRLRSLKLGGNRIEDDGLFPLLQFPRLESLDLSGTPISDQAMKTLAQLPRLKRLYVPG 273

Query: 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369
           T V   GL+ L+ ++ L ++++  T ++   +++L   S    +  DA  +  + +    
Sbjct: 274 TAVSDEGLQLLTSVSTLIALDVRKTAVTPSGVQQLEQHSPGLKIKSDAADLPSSHVIRSR 333

Query: 370 SLTGLTHLDLFGARITDSGA--------------AYLRNFKNLRSLEICGGGLTDAGVKH 415
            +  +    L  +R  D  A              + L +F +L+SLE+    L    ++ 
Sbjct: 334 DVLQMHGCHLTLSRSGDVIACQAGEDASPPIHWFSALESFSSLKSLELNRLALDGEQLQF 393

Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           +K++S L  L L Q C    + L ++  L  L  L++ ++ ++   L+ L
Sbjct: 394 LKNMSQLQSLALKQ-CTFPPEALSVLKSLNRLAWLDLRDTPVSDESLQAL 442



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 105/225 (46%), Gaps = 3/225 (1%)

Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
           I  L+ LQ+L   +L G  +    ++ LS L  L    + + +++D+G         LK 
Sbjct: 92  IGQLRSLQEL---DLSGTSLDDIGMEKLSKLEQLRTFAIAKTRVTDNGLRYVKAFRFLKS 148

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
           ++L  N++++  L HL+GL +L  +NL    +    L  L  L  L+ L+L +T     G
Sbjct: 149 IDLNQNKLSEAGLCHLEGLVSLREVNLRRSSVNGAALKWLQRLVLLEKLDLRNTNFTHHG 208

Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
           L  L+    L S+ L    I D  L  L     L+SL+L    I+D  +  L  L  L  
Sbjct: 209 LSFLTYFRRLRSLKLGGNRIEDDGLFPLLQFPRLESLDLSGTPISDQAMKTLAQLPRLKR 268

Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
           L + G  ++D G   L +   L +L++    +T +GV+ ++  S 
Sbjct: 269 LYVPGTAVSDEGLQLLTSVSTLIALDVRKTAVTPSGVQQLEQHSP 313



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 67/153 (43%), Gaps = 3/153 (1%)

Query: 48  WMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN 107
           W   + S  SSL S++L+   +    L  LK+ S LQSL    C       L  L+ L+ 
Sbjct: 366 WFSALES-FSSLKSLELNRLALDGEQLQFLKNMSQLQSLALKQCT-FPPEALSVLKSLNR 423

Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
           L  L  R +  ++ + ++A   L +L  L L R      GL +L     L  L IK C  
Sbjct: 424 LAWLDLR-DTPVSDESLQALGELPSLSNLCLSRTGVTATGLESLSSAPLLRDLVIKECGQ 482

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
           I D  +  L    NLK L I  + +T+ G   L
Sbjct: 483 IGDPAVLALEKFKNLKHLDIRGTNITEQGFCVL 515


>gi|290994342|ref|XP_002679791.1| predicted protein [Naegleria gruberi]
 gi|284093409|gb|EFC47047.1| predicted protein [Naegleria gruberi]
          Length = 300

 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 146/276 (52%), Gaps = 2/276 (0%)

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NL SL IS + + + G  Y+  L  LT+L++ G  + A   + +S +  +  L++    L
Sbjct: 4   NLTSLNISRNWIGEEGAKYISELDNLTILDIHGNDIVANGANHISKMKRITTLSVGLNNL 63

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
             +G +  S++  L  L +  N I +E    + GL  L  L++    IGD G  +L+ L 
Sbjct: 64  GKEGTKYISEMKQLTNLEINNNNIQEEGAKFISGLKQLTELSIHFNNIGDVGTKHLSELK 123

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            L  L + +  +G  G++H+  +  L  +++S   I       ++G++ L+ L++++  I
Sbjct: 124 QLTRLNIGENNIGDEGVKHILEMKQLTDLDISNNNIRHKGSEYISGMNQLRILDINSCNI 183

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
              G   ++ +  LT L++   +  D GA ++ + K L +LE+    ++D G K + ++S
Sbjct: 184 DPIGAQKISEMKQLTDLNIAWNQFGDEGAKFISDMKQLTTLELFNCDISDIGAKCVSEMS 243

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
            LT L++ +N NL+D+ +  +S +  L+ L+VS+S+
Sbjct: 244 KLTNLDIGEN-NLSDEGVRAVSNMK-LMILSVSSSK 277



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 139/290 (47%), Gaps = 26/290 (8%)

Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
           NLTSL+  RN  I  +G K  + L NL  LD+     +  G  ++  + ++ +L++   N
Sbjct: 4   NLTSLNISRN-WIGEEGAKYISELDNLTILDIHGNDIVANGANHISKMKRITTLSVG-LN 61

Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
            +     K +S +  L +L+I+ + + + G  ++ GL++LT L                 
Sbjct: 62  NLGKEGTKYISEMKQLTNLEINNNNIQEEGAKFISGLKQLTEL----------------- 104

Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
             S+ + N+      D G +  S++  L  LN+G N I DE + H+  +  L  L++ + 
Sbjct: 105 --SIHFNNI-----GDVGTKHLSELKQLTRLNIGENNIGDEGVKHILEMKQLTDLDISNN 157

Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
            I  +G   ++G+  L+ L+++   +   G + +S +  L  +N+++    D   + ++ 
Sbjct: 158 NIRHKGSEYISGMNQLRILDINSCNIDPIGAQKISEMKQLTDLNIAWNQFGDEGAKFISD 217

Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
           +  L +L L    I+D G   ++ ++ LT+LD+    ++D G   + N K
Sbjct: 218 MKQLTTLELFNCDISDIGAKCVSEMSKLTNLDIGENNLSDEGVRAVSNMK 267



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 92/198 (46%), Gaps = 3/198 (1%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+   L +++++ +++ + G   +     L  L  +F   I D G +HL  L  LT L+ 
Sbjct: 72  SEMKQLTNLEINNNNIQEEGAKFISGLKQLTELSIHFN-NIGDVGTKHLSELKQLTRLNI 130

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
             NN I  +G+K    +  L  LD+      H G   + G+ +L  L+I  CN I     
Sbjct: 131 GENN-IGDEGVKHILEMKQLTDLDISNNNIRHKGSEYISGMNQLRILDINSCN-IDPIGA 188

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           + +S +  L  L I+ ++  D G  ++  +++LT L L  C ++      +S +  L  L
Sbjct: 189 QKISEMKQLTDLNIAWNQFGDEGAKFISDMKQLTTLELFNCDISDIGAKCVSEMSKLTNL 248

Query: 234 NLNRCQLSDDGCEKFSKI 251
           ++    LSD+G    S +
Sbjct: 249 DIGENNLSDEGVRAVSNM 266



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
           +L SLN+    I + G   ++ L  LT LD+ G  I  +GA ++   K + +L +    L
Sbjct: 4   NLTSLNISRNWIGEEGAKYISELDNLTILDIHGNDIVANGANHISKMKRITTLSVGLNNL 63

Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
              G K+I ++  LT L ++ N N+ ++  + ISGL  L  L++  + I   G +HL
Sbjct: 64  GKEGTKYISEMKQLTNLEINNN-NIQEEGAKFISGLKQLTELSIHFNNIGDVGTKHL 119



 Score = 39.3 bits (90), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 26/180 (14%)

Query: 67  SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
           +++ D G  HL +   L  L+      I D G++H+  +  LT L    NN I  +G + 
Sbjct: 109 NNIGDVGTKHLSELKQLTRLNIGEN-NIGDEGVKHILEMKQLTDLDISNNN-IRHKGSEY 166

Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW---------------------- 164
            +G+  L  LD+  C     G   +  + +L  LNI W                      
Sbjct: 167 ISGMNQLRILDINSCNIDPIGAQKISEMKQLTDLNIAWNQFGDEGAKFISDMKQLTTLEL 226

Query: 165 CNC-ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
            NC I+D   K +S ++ L +L I  + ++D G+  +  + KL +L++       A  D+
Sbjct: 227 FNCDISDIGAKCVSEMSKLTNLDIGENNLSDEGVRAVSNM-KLMILSVSSSKKGQAKKDA 285


>gi|168704615|ref|ZP_02736892.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 294

 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 117/227 (51%)

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           I D+D+K L+   +L  L +  ++V+D+G+  L   + LT L L    VT A L  ++ L
Sbjct: 59  IADADLKELAAFKHLAVLSLYDTQVSDAGLKELTSSKGLTELLLSRTKVTDAGLKDVAKL 118

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
             L  L L+   ++D G  +   +  L  L L   +ITD    ++  L  L +L LD   
Sbjct: 119 THLEKLALDETAVTDAGIGELVPLKRLSELWLMGTKITDAAFKNVAKLKGLTTLRLDGAK 178

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           I   GL  +  +     L LS T +  +GL+ ++   +L  + LS   I+DG L++LA L
Sbjct: 179 ITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQLSECKITDGGLKELAAL 238

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
             L +L+L+  Q+TD G+ +L SL  L  L L   ++TD+G   +RN
Sbjct: 239 DKLTTLHLEKTQVTDAGVKSLASLKKLKVLHLTSTQVTDAGVKTIRN 285



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 119/234 (50%)

Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
           L +  +K+ D+ +  L   + L +L+L    V+ A L  L++   L  L L+R +++D G
Sbjct: 52  LWLEGTKIADADLKELAAFKHLAVLSLYDTQVSDAGLKELTSSKGLTELLLSRTKVTDAG 111

Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
            +  +K+  L+ L L    +TD  +  L  L  L  L L    I D    N+  L  L  
Sbjct: 112 LKDVAKLTHLEKLALDETAVTDAGIGELVPLKRLSELWLMGTKITDAAFKNVAKLKGLTT 171

Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
           L L   ++   GL+ ++ +    S+ LS T IS+  L+++A   SL+ L L   +ITD G
Sbjct: 172 LRLDGAKITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQLSECKITDGG 231

Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
           L  L +L  LT L L   ++TD+G   L + K L+ L +    +TDAGVK I++
Sbjct: 232 LKELAALDKLTTLHLEKTQVTDAGVKSLASLKKLKVLHLTSTQVTDAGVKTIRN 285



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 128/241 (53%), Gaps = 1/241 (0%)

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
           GS+  L L   +++D   ++ +    L VL+L   +++D  L  L     L  L L    
Sbjct: 47  GSVIELWLEGTKIADADLKELAAFKHLAVLSLYDTQVSDAGLKELTSSKGLTELLLSRTK 106

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           + D GL ++  L +L+ L L +T V  +G+  L  L  L  + L  T I+D + + +A L
Sbjct: 107 VTDAGLKDVAKLTHLEKLALDETAVTDAGIGELVPLKRLSELWLMGTKITDAAFKNVAKL 166

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
             L +L LD  +IT  GL  + ++ G   L L G  I+++G   +  FK+LR L++    
Sbjct: 167 KGLTTLRLDGAKITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQLSECK 226

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNH 467
           +TD G+K +  L  LT L+L +   +TD  ++ ++ L  L  L+++++++T AG++ + +
Sbjct: 227 ITDGGLKELAALDKLTTLHL-EKTQVTDAGVKSLASLKKLKVLHLTSTQVTDAGVKTIRN 285

Query: 468 A 468
           A
Sbjct: 286 A 286



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 121/261 (46%), Gaps = 27/261 (10%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           S++ + L G+ + D+ L  L    +L  L   +  Q+SD GL+ L     LT L   R  
Sbjct: 48  SVIELWLEGTKIADADLKELAAFKHLAVLSL-YDTQVSDAGLKELTSSKGLTELLLSRTK 106

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
            +T  G+K  A L +L KL L+                            +TD+ +  L 
Sbjct: 107 -VTDAGLKDVAKLTHLEKLALDE-------------------------TAVTDAGIGELV 140

Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
            L  L  L +  +K+TD+    +  L+ LT L L+G  +T   L  ++A+     L L+ 
Sbjct: 141 PLKRLSELWLMGTKITDAAFKNVAKLKGLTTLRLDGAKITGVGLKQVAAIDGFHSLYLSG 200

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
             +S+ G ++ +   SL++L L   +ITD  L  L  L  L +L+L+   + D G+ +L 
Sbjct: 201 TDISEAGLKEIAAFKSLRILQLSECKITDGGLKELAALDKLTTLHLEKTQVTDAGVKSLA 260

Query: 298 GLCNLKCLELSDTQVGSSGLR 318
            L  LK L L+ TQV  +G++
Sbjct: 261 SLKKLKVLHLTSTQVTDAGVK 281



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 114/233 (48%), Gaps = 1/233 (0%)

Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
           L LEG  +  A L  L+A   L  L+L   Q+SD G ++ +    L  L L   ++TD  
Sbjct: 52  LWLEGTKIADADLKELAAFKHLAVLSLYDTQVSDAGLKELTSSKGLTELLLSRTKVTDAG 111

Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
           L  +  LT+LE L LD   + D G+  L  L  L  L L  T++  +  ++++ L  L +
Sbjct: 112 LKDVAKLTHLEKLALDETAVTDAGIGELVPLKRLSELWLMGTKITDAAFKNVAKLKGLTT 171

Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
           + L    I+   L+++A +    SL L    I++ GL  + +   L  L L   +ITD G
Sbjct: 172 LRLDGAKITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQLSECKITDGG 231

Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
              L     L +L +    +TDAGVK +  L  L +L+L+ +  +TD  ++ I
Sbjct: 232 LKELAALDKLTTLHLEKTQVTDAGVKSLASLKKLKVLHLT-STQVTDAGVKTI 283



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 71/138 (51%), Gaps = 3/138 (2%)

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
           L G+ +TD+   ++     L +L  +   +I+  GL+ +  +    SL +     I+  G
Sbjct: 150 LMGTKITDAAFKNVAKLKGLTTLRLDGA-KITGVGLKQVAAIDGFHSL-YLSGTDISEAG 207

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
           +K  A   +L  L L  C    GGL  L  L KL +L+++    +TD+ +K L+ L  LK
Sbjct: 208 LKEIAAFKSLRILQLSECKITDGGLKELAALDKLTTLHLEKTQ-VTDAGVKSLASLKKLK 266

Query: 184 SLQISCSKVTDSGIAYLK 201
            L ++ ++VTD+G+  ++
Sbjct: 267 VLHLTSTQVTDAGVKTIR 284



 Score = 44.7 bits (104), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           S+ LSG+D++++GL  +    +L+ L  + C +I+DGGL+ L  L  LT+L   +   +T
Sbjct: 195 SLYLSGTDISEAGLKEIAAFKSLRILQLSEC-KITDGGLKELAALDKLTTLHLEKTQ-VT 252

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
             G+K+ A L  L  L L        G+  ++
Sbjct: 253 DAGVKSLASLKKLKVLHLTSTQVTDAGVKTIR 284


>gi|290974964|ref|XP_002670214.1| predicted protein [Naegleria gruberi]
 gi|284083770|gb|EFC37470.1| predicted protein [Naegleria gruberi]
          Length = 383

 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 145/278 (52%), Gaps = 1/278 (0%)

Query: 160 LNIKWCNCITDS-DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
           +N+K+   + DS  +K ++ +  LKSL IS +++ D G  ++  +++LT L++    +  
Sbjct: 106 VNLKFSRRLLDSIQVKFITEMKQLKSLDISENRIGDEGAKFISEMKQLTSLDIGYNRIGV 165

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
             +  ++ +  L  L+++   + D+G +  S++  L  L+   N I D+    +  + +L
Sbjct: 166 VGVKFINEMKHLTSLDISGNGIGDEGVKSISELKQLTSLDFNNNRIGDKGAKSISEMKHL 225

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
             L++++  IG EG   ++ +  LK L + + Q+G  G + ++ +  L S+++S   I  
Sbjct: 226 TLLSINNNHIGAEGARFISEMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDISGNEIGV 285

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             +  ++ +  L SL +   QI D G   ++ +  L  L+++  +I   GA ++   K L
Sbjct: 286 EGVIPISEMKQLTSLEIGGNQIGDEGAKLISEMKQLISLNIYNNQIGIEGAKFISEMKQL 345

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
           +SL I G  + D GVK I ++  LT L++  N  + DK
Sbjct: 346 KSLYIGGNQIGDEGVKFISEMKQLTSLDIGYNEIVKDK 383



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 120/246 (48%), Gaps = 25/246 (10%)

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           ++ +  L  L+++  ++ D+G +  S++  L  L++G+N I    +  +  + +L SL++
Sbjct: 123 ITEMKQLKSLDISENRIGDEGAKFISEMKQLTSLDIGYNRIGVVGVKFINEMKHLTSLDI 182

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
              GIGDEG+ +++ L  L  L+ ++ ++G  G + +S + +L  ++++   I     R 
Sbjct: 183 SGNGIGDEGVKSISELKQLTSLDFNNNRIGDKGAKSISEMKHLTLLSINNNHIGAEGARF 242

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           ++ +  LKSL++   QI D G   +  +  LT LD+ G  I   G   +   K L SLEI
Sbjct: 243 ISEMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDISGNEIGVEGVIPISEMKQLTSLEI 302

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
            G  + D G K                         LIS +  L+SLN+ N++I   G +
Sbjct: 303 GGNQIGDEGAK-------------------------LISEMKQLISLNIYNNQIGIEGAK 337

Query: 464 HLNHAR 469
            ++  +
Sbjct: 338 FISEMK 343



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 150/318 (47%), Gaps = 15/318 (4%)

Query: 6   ISQQIFNELVYSRCLTEVSLEAFRDCALQDLCL-GQYPG--VNDKW----MDVIA----S 54
           IS+Q FN +     L     + F +  + +LC+  Q+    VN K+    +D I     +
Sbjct: 66  ISKQFFNVIKERSKLVIKFKQKFTETRI-ELCMKSQFMNSIVNLKFSRRLLDSIQVKFIT 124

Query: 55  QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
           +   L S+D+S + + D G   + +   L SLD  +  +I   G++ +  + +LTSL   
Sbjct: 125 EMKQLKSLDISENRIGDEGAKFISEMKQLTSLDIGYN-RIGVVGVKFINEMKHLTSLDI- 182

Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
             N I  +G+K+ + L  L  LD         G  ++  +  L  L+I   N I     +
Sbjct: 183 SGNGIGDEGVKSISELKQLTSLDFNNNRIGDKGAKSISEMKHLTLLSIN-NNHIGAEGAR 241

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
            +S +  LKSL I  +++ D G  ++  +++LT L++ G  +    +  +S +  L  L 
Sbjct: 242 FISEMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDISGNEIGVEGVIPISEMKQLTSLE 301

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           +   Q+ D+G +  S++  L  LN+  N+I  E    +  +  L+SL +    IGDEG+ 
Sbjct: 302 IGGNQIGDEGAKLISEMKQLISLNIYNNQIGIEGAKFISEMKQLKSLYIGGNQIGDEGVK 361

Query: 295 NLTGLCNLKCLELSDTQV 312
            ++ +  L  L++   ++
Sbjct: 362 FISEMKQLTSLDIGYNEI 379



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 104/209 (49%), Gaps = 3/209 (1%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L S+D+SG+ + D G+  + +   L SLDFN   +I D G + +  + +LT LS   NN 
Sbjct: 177 LTSLDISGNGIGDEGVKSISELKQLTSLDFNNN-RIGDKGAKSISEMKHLTLLSI-NNNH 234

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           I A+G +  + +  L  L +        G   +  + +L SL+I   N I    + P+S 
Sbjct: 235 IGAEGARFISEMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDIS-GNEIGVEGVIPISE 293

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           +  L SL+I  +++ D G   +  +++L  LN+    +       +S +  L  L +   
Sbjct: 294 MKQLTSLEIGGNQIGDEGAKLISEMKQLISLNIYNNQIGIEGAKFISEMKQLKSLYIGGN 353

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
           Q+ D+G +  S++  L  L++G+NEI  +
Sbjct: 354 QIGDEGVKFISEMKQLTSLDIGYNEIVKD 382



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 1/123 (0%)

Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
           ++S+ +L    R +    +  +T +  L  LD+   RI D GA ++   K L SL+I   
Sbjct: 102 MNSIVNLKFSRRLLDSIQVKFITEMKQLKSLDISENRIGDEGAKFISEMKQLTSLDIGYN 161

Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
            +   GVK I ++  LT L++S N  + D+ ++ IS L  L SL+ +N+RI   G + ++
Sbjct: 162 RIGVVGVKFINEMKHLTSLDISGN-GIGDEGVKSISELKQLTSLDFNNNRIGDKGAKSIS 220

Query: 467 HAR 469
             +
Sbjct: 221 EMK 223


>gi|149173873|ref|ZP_01852502.1| hypothetical protein PM8797T_05530 [Planctomyces maris DSM 8797]
 gi|148847403|gb|EDL61737.1| hypothetical protein PM8797T_05530 [Planctomyces maris DSM 8797]
          Length = 473

 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 105/358 (29%), Positives = 161/358 (44%), Gaps = 21/358 (5%)

Query: 117 NAITAQGMKAFAGLINLVKLD-LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
           N   A G   F+   +    D L   TR+ G          L + ++   N  + +  K 
Sbjct: 72  NKPEAGGGYYFSNYFDYCSEDELPMLTRVEG----------LRAFDMFDGNSFSPAGWKQ 121

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT---LLN--LEGCPVTAACLDSLSALGSL 230
           +  ++ L++  +SC  VTD  +  L+GL +L    +LN  ++  PV+   L  LS+  +L
Sbjct: 122 IGQISGLEAFNVSCQYVTDEHLMGLQGLPQLKDLKILNNCMKQSPVSDQGLQVLSSFPAL 181

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
             L L+  +++  GCE       L+ L L +  ITDECL  L  L NL+ L +      D
Sbjct: 182 RRLVLHSREINVRGCELIGDCTELRALEL-WGPITDECLKPLGKLKNLKHLIVVGT-FSD 239

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
            GL +L+GL  L  L L   Q+  SGL   +    L     S +   + +L++L  L  L
Sbjct: 240 AGLKHLSGLKQLTRLVLHSDQMTGSGLNSFAEAPELREFGFSGSPAGNATLKQLDQLPGL 299

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
             LNL    + D  L  +  L  L  L L  + ITD G   L   KNLR L +    +T+
Sbjct: 300 AVLNLSTPSVNDAVLQTMPDLPQLEALSLKNSNITDKGLDALVKVKNLRELVLYSTEITN 359

Query: 411 AGVKHIKDLSSLTLLNLSQNCN---LTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           AG+  ++ L  L LL L    +   +T K LE ++ L+ L  L++         LR L
Sbjct: 360 AGLIRLEPLQQLRLLVLGNPGHTELITGKGLESLTKLSRLEVLDIDYVNAEQLDLRPL 417



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 131/292 (44%), Gaps = 57/292 (19%)

Query: 25  LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
           L   +D  + + C+ Q P V+D+ + V++S   +L  + L   ++   G   + DC+ L+
Sbjct: 149 LPQLKDLKILNNCMKQSP-VSDQGLQVLSS-FPALRRLVLHSREINVRGCELIGDCTELR 206

Query: 85  SLDF-----NFCIQ----------------ISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
           +L+      + C++                 SD GL+HL GL  LT L    ++ +T  G
Sbjct: 207 ALELWGPITDECLKPLGKLKNLKHLIVVGTFSDAGLKHLSGLKQLTRLVL-HSDQMTGSG 265

Query: 124 MKAFA------------------------GLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
           + +FA                         L  L  L+L   +     L  +  L +LE+
Sbjct: 266 LNSFAEAPELREFGFSGSPAGNATLKQLDQLPGLAVLNLSTPSVNDAVLQTMPDLPQLEA 325

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP---- 215
           L++K  N ITD  +  L  + NL+ L +  +++T++G+  L+ LQ+L LL L G P    
Sbjct: 326 LSLKNSN-ITDKGLDALVKVKNLRELVLYSTEITNAGLIRLEPLQQLRLLVL-GNPGHTE 383

Query: 216 -VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL--KVLNLGFNEI 264
            +T   L+SL+ L  L  L+++            ++  SL   +LN G +++
Sbjct: 384 LITGKGLESLTKLSRLEVLDIDYVNAEQLDLRPLARCSSLVEVILNFGSDDV 435



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 11/192 (5%)

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
            D C   ++ L  LT +  L+  ++ D      +G + +  ++ LE+ N+S   ++D  L
Sbjct: 86  FDYCS--EDELPMLTRVEGLRAFDMFDGNSFSPAGWKQIGQISGLEAFNVSCQYVTDEHL 143

Query: 342 RKLAGLSSLKSLN-----LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
             L GL  LK L      +    ++D GL  L+S   L  L L    I   G   + +  
Sbjct: 144 MGLQGLPQLKDLKILNNCMKQSPVSDQGLQVLSSFPALRRLVLHSREINVRGCELIGDCT 203

Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
            LR+LE+ G  +TD  +K +  L +L   +L      +D  L+ +SGL  L  L + + +
Sbjct: 204 ELRALELWGP-ITDECLKPLGKLKNLK--HLIVVGTFSDAGLKHLSGLKQLTRLVLHSDQ 260

Query: 457 ITSAGLRHLNHA 468
           +T +GL     A
Sbjct: 261 MTGSGLNSFAEA 272


>gi|320165725|gb|EFW42624.1| hypothetical protein CAOG_07756 [Capsaspora owczarzaki ATCC 30864]
          Length = 880

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 124/437 (28%), Positives = 181/437 (41%), Gaps = 52/437 (11%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
           +N+ W+  I S   + L+            LI L+       LD N   QI+        
Sbjct: 234 LNNNWLSAIPSSAFTGLT-----------ALIQLR-------LDTN---QITTVPANAFS 272

Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLN 161
           GL+ L  L +  NN IT     AF+G   LV+L L   + T I      L GL  L  L 
Sbjct: 273 GLTALIYL-YLYNNQITTVATNAFSGPTALVQLQLYGNQITTIPSSA--LTGLSALTQLY 329

Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE-----GCP- 215
           + + N IT       SGLT L  L++S + +T        GL KLT L+L        P 
Sbjct: 330 L-YNNQITSVPANGFSGLTALTDLRLSNNTITSILANAFTGLTKLTYLDLSLNQLTSIPA 388

Query: 216 ------------------VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
                             ++A    + + L +L YL LN  Q++      F+ + +L  L
Sbjct: 389 GAFSGLTALTQLLLFNNWLSAVPSSAFTGLTALIYLYLNNNQITTVAANAFTGLTALVQL 448

Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
            L  N+IT        GL+ L  L L S  I    +   TGL +L  LELS+ Q+ S   
Sbjct: 449 QLYGNQITTIPASAFAGLSALVQLYLYSNRITAIFVNAFTGLTHLSLLELSNNQITSLPA 508

Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
              +GLT +  ++L    +S        GL++L++L L   QIT     A T LT L  L
Sbjct: 509 NAFAGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALYLYNNQITTVAANAFTGLTALVQL 568

Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
            L+  +IT   A+       L  L +    +T         L+ LT L++S N  +T   
Sbjct: 569 HLYRNQITTIPASAFAGLSALVQLYLNSNRITTIFANAFPSLTKLTYLDISNN-QITSLP 627

Query: 438 LELISGLTGLVSLNVSN 454
               +GLT +  L++ N
Sbjct: 628 ANAFTGLTAMTQLHLYN 644



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 114/391 (29%), Positives = 163/391 (41%), Gaps = 27/391 (6%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           QI+        GL+ L  L +  NN I    + AF+GL  L  L L     I        
Sbjct: 142 QITTVPSSAFTGLTALQIL-YLHNNQIATVAINAFSGLTALQTLYLYNNQIITVATNAFS 200

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
           GL  L+ L +   N IT       SGL+ L +LQ++ + ++    +   GL  L  L L+
Sbjct: 201 GLAALQVLRLD-TNQITTVPANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALIQLRLD 259

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
              +T    ++ S L +L YL L   Q++      FS   +L  L L  N+IT      L
Sbjct: 260 TNQITTVPANAFSGLTALIYLYLYNNQITTVATNAFSGPTALVQLQLYGNQITTIPSSAL 319

Query: 273 KGLTNLESLNLDSCGI------GDEGLVNL------------------TGLCNLKCLELS 308
            GL+ L  L L +  I      G  GL  L                  TGL  L  L+LS
Sbjct: 320 TGLSALTQLYLYNNQITSVPANGFSGLTALTDLRLSNNTITSILANAFTGLTKLTYLDLS 379

Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
             Q+ S      SGLT L  + L    +S        GL++L  L L+  QIT     A 
Sbjct: 380 LNQLTSIPAGAFSGLTALTQLLLFNNWLSAVPSSAFTGLTALIYLYLNNNQITTVAANAF 439

Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
           T LT L  L L+G +IT   A+       L  L +    +T   V     L+ L+LL LS
Sbjct: 440 TGLTALVQLQLYGNQITTIPASAFAGLSALVQLYLYSNRITAIFVNAFTGLTHLSLLELS 499

Query: 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            N  +T       +GLT +  L++ N+ +++
Sbjct: 500 NN-QITSLPANAFAGLTAMTQLSLYNNSLSA 529



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 109/444 (24%), Positives = 189/444 (42%), Gaps = 36/444 (8%)

Query: 46  DKWMDVIASQG----SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
           + W+  + S      ++L+ + L+ + +T          + L  L   +  QI+      
Sbjct: 404 NNWLSAVPSSAFTGLTALIYLYLNNNQITTVAANAFTGLTALVQLQL-YGNQITTIPASA 462

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 159
             GLS L  L +  +N ITA  + AF GL +L  L+L   + T +        GL  +  
Sbjct: 463 FAGLSALVQL-YLYSNRITAIFVNAFTGLTHLSLLELSNNQITSLPANA--FAGLTAMTQ 519

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
           L++ + N ++       +GLT L++L +  +++T        GL  L  L+L    +T  
Sbjct: 520 LSL-YNNSLSAVPSSAFTGLTALQALYLYNNQITTVAANAFTGLTALVQLHLYRNQITTI 578

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
              + + L +L  L LN  +++      F  +  L  L++  N+IT        GLT + 
Sbjct: 579 PASAFAGLSALVQLYLNSNRITTIFANAFPSLTKLTYLDISNNQITSLPANAFTGLTAMT 638

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-------- 331
            L+L +           TGL  L+ L L + Q+ S      + LT L  + L        
Sbjct: 639 QLHLYNNLFSTVPSSAFTGLTALQALFLFNNQISSVAANAFTSLTALIQLQLYGNLITTI 698

Query: 332 ---SFTGISDGSLRKL-------------AGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
              +F+G+S  +L +L              GL++L  L LD  QIT     A + LT L 
Sbjct: 699 PAGAFSGLSKLNLLQLYNNWLSAIPSSAFTGLTALTQLRLDTNQITTVPANAFSGLTALI 758

Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
           +L L+G +IT   A+       L++L +    +T         L++L  L+LS +  +T 
Sbjct: 759 YLSLYGNQITTISASAFAGLTALQALYLNDNTITTIAANAFAGLTALNWLDLS-DSQITS 817

Query: 436 KTLELISGLTGLVSLNVSNSRITS 459
               + S L  L  LN+ N+ +++
Sbjct: 818 IPANVFSSLPALAQLNLYNNWLSA 841



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 106/355 (29%), Positives = 149/355 (41%), Gaps = 15/355 (4%)

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER---CTRIHGGLVNLKGLMKLE 158
             GL+ L +L +  NN IT     AF GL  LV+L L R    T        L  L++L 
Sbjct: 535 FTGLTALQAL-YLYNNQITTVAANAFTGLTALVQLHLYRNQITTIPASAFAGLSALVQLY 593

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG---CP 215
            LN    N IT         LT L  L IS +++T        GL  +T L+L       
Sbjct: 594 -LN---SNRITTIFANAFPSLTKLTYLDISNNQITSLPANAFTGLTAMTQLHLYNNLFST 649

Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
           V ++    L+AL +LF  N    Q+S      F+ + +L  L L  N IT        GL
Sbjct: 650 VPSSAFTGLTALQALFLFN---NQISSVAANAFTSLTALIQLQLYGNLITTIPAGAFSGL 706

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
           + L  L L +  +        TGL  L  L L   Q+ +      SGLT L  ++L    
Sbjct: 707 SKLNLLQLYNNWLSAIPSSAFTGLTALTQLRLDTNQITTVPANAFSGLTALIYLSLYGNQ 766

Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
           I+  S    AGL++L++L L+   IT     A   LT L  LDL  ++IT   A    + 
Sbjct: 767 ITTISASAFAGLTALQALYLNDNTITTIAANAFAGLTALNWLDLSDSQITSIPANVFSSL 826

Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
             L  L +    L+         L++LT L +  N  +T  +    +GL  LV L
Sbjct: 827 PALAQLNLYNNWLSAVPTSAFTGLTALTQLTMYGN-RITTISANAFTGLNALVQL 880



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 105/393 (26%), Positives = 166/393 (42%), Gaps = 31/393 (7%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV--KLDLERCTRIHGGLVN 150
           QI+        GLS L +L    NN ++A    AF GL  L+  +LD  + T +      
Sbjct: 214 QITTVPANAFSGLSKLNTLQLN-NNWLSAIPSSAFTGLTALIQLRLDTNQITTVPANA-- 270

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
             GL  L  L + + N IT       SG T L  LQ+  +++T    + L GL  LT L 
Sbjct: 271 FSGLTALIYLYL-YNNQITTVATNAFSGPTALVQLQLYGNQITTIPSSALTGLSALTQLY 329

Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
           L    +T+   +  S L +L  L L+   ++      F+ +  L  L+L  N++T     
Sbjct: 330 LYNNQITSVPANGFSGLTALTDLRLSNNTITSILANAFTGLTKLTYLDLSLNQLTSIPAG 389

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
              GLT L  L L +  +        TGL  L  L L++ Q+ +      +GLT L  + 
Sbjct: 390 AFSGLTALTQLLLFNNWLSAVPSSAFTGLTALIYLYLNNNQITTVAANAFTGLTALVQLQ 449

Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITD------TGLA------------------ 366
           L    I+       AGLS+L  L L + +IT       TGL                   
Sbjct: 450 LYGNQITTIPASAFAGLSALVQLYLYSNRITAIFVNAFTGLTHLSLLELSNNQITSLPAN 509

Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
           A   LT +T L L+   ++   ++       L++L +    +T         L++L  L+
Sbjct: 510 AFAGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALYLYNNQITTVAANAFTGLTALVQLH 569

Query: 427 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
           L +N  +T       +GL+ LV L ++++RIT+
Sbjct: 570 LYRN-QITTIPASAFAGLSALVQLYLNSNRITT 601



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 138/336 (41%), Gaps = 14/336 (4%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN 150
           QI+        GL+ L  L   RN  IT     AFAGL  LV+L L   R T I      
Sbjct: 550 QITTVAANAFTGLTALVQLHLYRNQ-ITTIPASAFAGLSALVQLYLNSNRITTIFANA-- 606

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS---CSKVTDSGIAYLKGLQKLT 207
              L KL  L+I   N IT       +GLT +  L +     S V  S    L  LQ L 
Sbjct: 607 FPSLTKLTYLDIS-NNQITSLPANAFTGLTAMTQLHLYNNLFSTVPSSAFTGLTALQALF 665

Query: 208 LLNLEGCPVTAACLDSLSALGSL-FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
           L N +   V A    SL+AL  L  Y NL    ++      FS +  L +L L  N ++ 
Sbjct: 666 LFNNQISSVAANAFTSLTALIQLQLYGNL----ITTIPAGAFSGLSKLNLLQLYNNWLSA 721

Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
                  GLT L  L LD+  I        +GL  L  L L   Q+ +      +GLT L
Sbjct: 722 IPSSAFTGLTALTQLRLDTNQITTVPANAFSGLTALIYLSLYGNQITTISASAFAGLTAL 781

Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
           +++ L+   I+  +    AGL++L  L+L   QIT       +SL  L  L+L+   ++ 
Sbjct: 782 QALYLNDNTITTIAANAFAGLTALNWLDLSDSQITSIPANVFSSLPALAQLNLYNNWLSA 841

Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
              +       L  L + G  +T         L++L
Sbjct: 842 VPTSAFTGLTALTQLTMYGNRITTISANAFTGLNAL 877



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 145/356 (40%), Gaps = 50/356 (14%)

Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
           G+   T+  + ++N IT+    AF GL  L  + L+                        
Sbjct: 56  GIPATTTTLYLQSNQITSISSSAFTGLTALTYMRLD------------------------ 91

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
             N IT       SGL+ L +LQ++ +                    L   P +A     
Sbjct: 92  -TNQITTVPANAFSGLSTLNTLQLNNNW-------------------LSAIPSSA----- 126

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
            + L +L  L LN  Q++      F+ + +L++L L  N+I    +    GLT L++L L
Sbjct: 127 FTGLTALIQLLLNNNQITTVPSSAFTGLTALQILYLHNNQIATVAINAFSGLTALQTLYL 186

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
            +  I        +GL  L+ L L   Q+ +      SGL+ L ++ L+   +S      
Sbjct: 187 YNNQIITVATNAFSGLAALQVLRLDTNQITTVPANAFSGLSKLNTLQLNNNWLSAIPSSA 246

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
             GL++L  L LD  QIT     A + LT L +L L+  +IT            L  L++
Sbjct: 247 FTGLTALIQLRLDTNQITTVPANAFSGLTALIYLYLYNNQITTVATNAFSGPTALVQLQL 306

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            G  +T      +  LS+LT L L  N  +T       SGLT L  L +SN+ ITS
Sbjct: 307 YGNQITTIPSSALTGLSALTQLYLYNN-QITSVPANGFSGLTALTDLRLSNNTITS 361


>gi|17546520|ref|NP_519922.1| GALA protein 3 [Ralstonia solanacearum GMI1000]
          Length = 522

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 129/482 (26%), Positives = 213/482 (44%), Gaps = 63/482 (13%)

Query: 1   MLPRDISQQI--------FNELVYSRCLTEVSLEA-FRDCALQD-------LCLGQYPGV 44
            LP DI ++I           L  +    + ++EA  R+  ++D       L  G YP  
Sbjct: 50  QLPPDIFREIARRSDPLTVQRLRVASKPVKAAIEADMRELVIKDRAGLAGVLRAGNYP-- 107

Query: 45  NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHLR 103
                        +L  + L+G+  TD  L  L   ++L++LD + C   I+  G+ HL 
Sbjct: 108 -------------ALEKLTLAGT-FTDDDLRGLP--ASLKALDLSRCRGSITAAGIAHLS 151

Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
            L  L  L+ R N  I A+G +  A    L  L++        G   L    +L +LN+ 
Sbjct: 152 RLP-LVRLNVR-NKRIGAEGARLLANHPTLTSLNVSNGRIGPEGAQALAANTRLTTLNVS 209

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
             N I  +  K L+    L+SL +S +++ D G   L                 AAC   
Sbjct: 210 -GNRIGVAGAKALAANQTLRSLDVSDNRIGDEGAREL-----------------AACTQ- 250

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
                 L  L+ NR  +  DG    +   +L  L +G NEI D  ++ L     L +LN+
Sbjct: 251 ------LTTLDANRNGIGVDGATALAASRTLTSLAIGGNEIGDAGVLALAANARLTTLNV 304

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
           +S G+G +G+  L     L  L L    +G++G   L+  T+L +++L  + I     + 
Sbjct: 305 ESTGVGADGVKALAASKTLTWLRLDGNDIGNAGATALAASTSLTTLHLEHSRIGAEGAQA 364

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           LA  + L +L+L    I D G+ AL++   L  L +    + D+ A  L   K L +L+I
Sbjct: 365 LAANTKLTTLDLGYNDIGDAGVRALSANATLVWLSVRRNNLEDASAVSLAAGKTLTTLDI 424

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
            G G+ D G K +    +LT L++S N ++ +     ++    LVSL++ N+R+  +G R
Sbjct: 425 SGNGIQDQGAKALAANPTLTTLDVSSN-DIKNAGARALAANARLVSLDLRNNRMEESGTR 483

Query: 464 HL 465
            L
Sbjct: 484 AL 485


>gi|29823176|emb|CAD15503.2| probable lrr-gala family type III effector protein (gala 5)
           [Ralstonia solanacearum GMI1000]
          Length = 538

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 129/482 (26%), Positives = 213/482 (44%), Gaps = 63/482 (13%)

Query: 1   MLPRDISQQI--------FNELVYSRCLTEVSLEA-FRDCALQD-------LCLGQYPGV 44
            LP DI ++I           L  +    + ++EA  R+  ++D       L  G YP  
Sbjct: 66  QLPPDIFREIARRSDPLTVQRLRVASKPVKAAIEADMRELVIKDRAGLAGVLRAGNYP-- 123

Query: 45  NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHLR 103
                        +L  + L+G+  TD  L  L   ++L++LD + C   I+  G+ HL 
Sbjct: 124 -------------ALEKLTLAGT-FTDDDLRGLP--ASLKALDLSRCRGSITAAGIAHLS 167

Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
            L  L  L+ R N  I A+G +  A    L  L++        G   L    +L +LN+ 
Sbjct: 168 RLP-LVRLNVR-NKRIGAEGARLLANHPTLTSLNVSNGRIGPEGAQALAANTRLTTLNVS 225

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
             N I  +  K L+    L+SL +S +++ D G   L                 AAC   
Sbjct: 226 -GNRIGVAGAKALAANQTLRSLDVSDNRIGDEGAREL-----------------AACTQ- 266

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
                 L  L+ NR  +  DG    +   +L  L +G NEI D  ++ L     L +LN+
Sbjct: 267 ------LTTLDANRNGIGVDGATALAASRTLTSLAIGGNEIGDAGVLALAANARLTTLNV 320

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
           +S G+G +G+  L     L  L L    +G++G   L+  T+L +++L  + I     + 
Sbjct: 321 ESTGVGADGVKALAASKTLTWLRLDGNDIGNAGATALAASTSLTTLHLEHSRIGAEGAQA 380

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           LA  + L +L+L    I D G+ AL++   L  L +    + D+ A  L   K L +L+I
Sbjct: 381 LAANTKLTTLDLGYNDIGDAGVRALSANATLVWLSVRRNNLEDASAVSLAAGKTLTTLDI 440

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
            G G+ D G K +    +LT L++S N ++ +     ++    LVSL++ N+R+  +G R
Sbjct: 441 SGNGIQDQGAKALAANPTLTTLDVSSN-DIKNAGARALAANARLVSLDLRNNRMEESGTR 499

Query: 464 HL 465
            L
Sbjct: 500 AL 501


>gi|46445682|ref|YP_007047.1| hypothetical protein pc0048 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399323|emb|CAF22772.1| hypothetical protein pc0048 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 531

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 123/225 (54%), Gaps = 28/225 (12%)

Query: 66  GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
            + +TD+ L+ LK+C NL++L    C  ++D GL  L  L+NL  L+    + +T +G+ 
Sbjct: 306 NAHLTDAHLLALKNCKNLKALHLQACHNLTDDGLASLTSLTNLQYLNLSCCDKLTNKGLA 365

Query: 126 AFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
            F  LI L  L+L  C  I   GL +LK L+ L+ LN              LSG      
Sbjct: 366 HFKSLIALQYLNLSGCAFITDAGLAHLKPLVALQYLN--------------LSG------ 405

Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSD 242
               C+ +TD+G+A+LK L  L  LNL GC  +T A L  L+ L +L +L+L+ C  L++
Sbjct: 406 ----CAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLTPLVTLKHLDLSWCNSLTN 461

Query: 243 DGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC 286
            G E+ + + +L+ LNL G   +T+  L HL  LTNL+ LNL+ C
Sbjct: 462 AGLERLASLVALQHLNLSGCIYLTEAGLTHLTSLTNLQQLNLNHC 506



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 86/232 (37%), Positives = 123/232 (53%), Gaps = 17/232 (7%)

Query: 255 KVLNLGFNEI-----------TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 302
           K+LN   NEI           TD  L+ LK   NL++L+L +C  + D+GL +LT L NL
Sbjct: 289 KILNYFSNEIEKLNFSENAHLTDAHLLALKNCKNLKALHLQACHNLTDDGLASLTSLTNL 348

Query: 303 KCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQ 359
           + L LS   ++ + GL H   L  L+ +NLS    I+D  L  L  L +L+ LNL     
Sbjct: 349 QYLNLSCCDKLTNKGLAHFKSLIALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAF 408

Query: 360 ITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIK 417
           ITD GLA L  L  L +L+L G A ITD+G A+L     L+ L++     LT+AG++ + 
Sbjct: 409 ITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLTPLVTLKHLDLSWCNSLTNAGLERLA 468

Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
            L +L  LNLS    LT+  L  ++ LT L  LN+++    +     L H R
Sbjct: 469 SLVALQHLNLSGCIYLTEAGLTHLTSLTNLQQLNLNHCEHFADVRFKLTHFR 520



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 102/190 (53%), Gaps = 3/190 (1%)

Query: 68  DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           ++TD GL  L   +NLQ L+ + C ++++ GL H + L  L  L+      IT  G+   
Sbjct: 333 NLTDDGLASLTSLTNLQYLNLSCCDKLTNKGLAHFKSLIALQYLNLSGCAFITDAGLAHL 392

Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
             L+ L  L+L  C  I   GL +LK L+ L+ LN+  C  ITD+ +  L+ L  LK L 
Sbjct: 393 KPLVALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLTPLVTLKHLD 452

Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
           +S C+ +T++G+  L  L  L  LNL GC  +T A L  L++L +L  LNLN C+   D 
Sbjct: 453 LSWCNSLTNAGLERLASLVALQHLNLSGCIYLTEAGLTHLTSLTNLQQLNLNHCEHFADV 512

Query: 245 CEKFSKIGSL 254
             K +   +L
Sbjct: 513 RFKLTHFRTL 522



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 83/247 (33%), Positives = 120/247 (48%), Gaps = 29/247 (11%)

Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECL 269
           E   +T A L +L    +L  L+L  C  L+DDG    + + +L+ LNL   +++T++ L
Sbjct: 305 ENAHLTDAHLLALKNCKNLKALHLQACHNLTDDGLASLTSLTNLQYLNLSCCDKLTNKGL 364

Query: 270 VHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLE 327
            H K L  L+ LNL  C  I D GL +L  L  L+ L LS    +  +GL HL  L  L+
Sbjct: 365 AHFKSLIALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLKPLVALQ 424

Query: 328 SINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARIT 385
            +NLS    I+D  L  L  L +LK L+L     +T+ GL  L SL  L HL+L      
Sbjct: 425 YLNLSGCAFITDAGLAHLTPLVTLKHLDLSWCNSLTNAGLERLASLVALQHLNL------ 478

Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
            SG  YL                T+AG+ H+  L++L  LNL+   +  D   +L    T
Sbjct: 479 -SGCIYL----------------TEAGLTHLTSLTNLQQLNLNHCEHFADVRFKLTHFRT 521

Query: 446 GLVSLNV 452
            L + N+
Sbjct: 522 LLANPNL 528



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 68/130 (52%), Gaps = 6/130 (4%)

Query: 58  SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           +L  ++LSG + +TD+GL HLK    LQ L+ + C  I+D GL HL  L  L  L     
Sbjct: 397 ALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLTPLVTLKHLDLSWC 456

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
           N++T  G++  A L+ L  L+L  C  +   GL +L  L  L+ LN+  C    D   K 
Sbjct: 457 NSLTNAGLERLASLVALQHLNLSGCIYLTEAGLTHLTSLTNLQQLNLNHCEHFADVRFK- 515

Query: 176 LSGLTNLKSL 185
              LT+ ++L
Sbjct: 516 ---LTHFRTL 522


>gi|301126468|ref|XP_002909849.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262101999|gb|EEY60051.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 427

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 111/336 (33%), Positives = 175/336 (52%), Gaps = 15/336 (4%)

Query: 55  QGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSN-LTSL 111
           Q   L  V+L+G S +TD  +  L + S L S+    C Q++D  ++ L    SN LTS+
Sbjct: 84  QFPHLKEVNLTGCSSLTDESVEQLANLSGLTSVALKGCYQVTDKSIKLLTESQSNSLTSV 143

Query: 112 SFRRNNAITAQGMKAFAG-LINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN--C 167
           +      ++ +G+ A A  L  L  L+L  C+++   G+  L  L  L++LN+ +CN   
Sbjct: 144 NLGYCKVVSDEGITAIASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWYCNQGA 203

Query: 168 ITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS 225
           +TD  +  L+ +T+L SL +S CS++TD GI+ L  L KL  L +     VT     +L+
Sbjct: 204 LTDGGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALA 263

Query: 226 ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNL 283
            L +L  L++  C  ++D G E       L   NL + +EI D    H++ LT +  LN 
Sbjct: 264 PLVNLVTLDVAGCYNITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNF 323

Query: 284 DSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSGLTNLESINL-SFTGISDGS 340
             CG + D GL ++  L NL  L++ S   V   GL  LS L  L+S+ L   +GI D  
Sbjct: 324 MKCGKVTDRGLRSIAKLRNLTSLDMVSCFNVTDEGLNELSKLNRLKSLYLGGCSGIRDEG 383

Query: 341 LRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLT 375
           +  L+ LSSL  L+L + RQ+ +  L  +   TG++
Sbjct: 384 IAALSHLSSLVILDLSNCRQVGNKALLGIDDGTGVS 419



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 97/287 (33%), Positives = 151/287 (52%), Gaps = 14/287 (4%)

Query: 44  VNDKWMDVIA-SQGSSLLSVDLSGSDV-TDSGLIHL-KDCSNLQSLDFNFCIQISDGGLE 100
           V DK + ++  SQ +SL SV+L    V +D G+  +  + S L  L+   C Q+ D G+ 
Sbjct: 124 VTDKSIKLLTESQSNSLTSVNLGYCKVVSDEGITAIASNLSKLNYLNLRGCSQVGDNGIR 183

Query: 101 HLRGLSNLTSLSFRRNN--AITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKL 157
            L  L NL +L+    N  A+T  G+ A A + +L  L+L  C+++   G+ +L  L+KL
Sbjct: 184 ALARLKNLQTLNLWYCNQGALTDGGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKL 243

Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-P 215
             L I     +TD     L+ L NL +L ++ C  +TD+G   L    KL   NL  C  
Sbjct: 244 RHLEIANVGEVTDQGFLALAPLVNLVTLDVAGCYNITDAGTEVLVNFPKLASCNLWYCSE 303

Query: 216 VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLG--FNEITDECLVHL 272
           +  A    + +L  + +LN  +C +++D G    +K+ +L  L++   FN +TDE L  L
Sbjct: 304 IGDATFQHMESLTKMRFLNFMKCGKVTDRGLRSIAKLRNLTSLDMVSCFN-VTDEGLNEL 362

Query: 273 KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGL 317
             L  L+SL L  C GI DEG+  L+ L +L  L+LS+  QVG+  L
Sbjct: 363 SKLNRLKSLYLGGCSGIRDEGIAALSHLSSLVILDLSNCRQVGNKAL 409



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 172/342 (50%), Gaps = 47/342 (13%)

Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQK--LTLLNLEG 213
           L+ +N+  C+ +TD  ++ L+ L+ L S+ +  C +VTD  I  L   Q   LT +NL  
Sbjct: 88  LKEVNLTGCSSLTDESVEQLANLSGLTSVALKGCYQVTDKSIKLLTESQSNSLTSVNLGY 147

Query: 214 CPVTAACLDSLSALGS----LFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF---NEIT 265
           C V +   + ++A+ S    L YLNL  C Q+ D+G    +++ +L+ LNL +     +T
Sbjct: 148 CKVVSD--EGITAIASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWYCNQGALT 205

Query: 266 DECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGL 323
           D  +  L  +T+L SLNL +C  + DEG+ +L+ L  L+ LE+++  +V   G   L+ L
Sbjct: 206 DGGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALAPL 265

Query: 324 TNL-------------------------ESINLSF-TGISDGSLRKLAGLSSLKSLN-LD 356
            NL                          S NL + + I D + + +  L+ ++ LN + 
Sbjct: 266 VNLVTLDVAGCYNITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNFMK 325

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVK 414
             ++TD GL ++  L  LT LD+     +TD G   L     L+SL + G  G+ D G+ 
Sbjct: 326 CGKVTDRGLRSIAKLRNLTSLDMVSCFNVTDEGLNELSKLNRLKSLYLGGCSGIRDEGIA 385

Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELI---SGLTGLVSLNVS 453
            +  LSSL +L+LS    + +K L  I   +G++G V+  V 
Sbjct: 386 ALSHLSSLVILDLSNCRQVGNKALLGIDDGTGVSGAVAHQVP 427



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 152/305 (49%), Gaps = 16/305 (5%)

Query: 179 LTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSL--SALGSLFYLN 234
             +LK + ++ CS +TD  +  L  L  LT + L+GC  VT   +  L  S   SL  +N
Sbjct: 85  FPHLKEVNLTGCSSLTDESVEQLANLSGLTSVALKGCYQVTDKSIKLLTESQSNSLTSVN 144

Query: 235 LNRCQL-SDDGCEKF-SKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIG-- 289
           L  C++ SD+G     S +  L  LNL G +++ D  +  L  L NL++LNL  C  G  
Sbjct: 145 LGYCKVVSDEGITAIASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWYCNQGAL 204

Query: 290 -DEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAG 346
            D G+  L  + +L  L LS+ +Q+   G+  LS L  L  + ++  G ++D     LA 
Sbjct: 205 TDGGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALAP 264

Query: 347 LSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEIC 404
           L +L +L++     ITD G   L +   L   +L + + I D+   ++ +   +R L   
Sbjct: 265 LVNLVTLDVAGCYNITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNFM 324

Query: 405 G-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGL 462
             G +TD G++ I  L +LT L++    N+TD+ L  +S L  L SL +   S I   G+
Sbjct: 325 KCGKVTDRGLRSIAKLRNLTSLDMVSCFNVTDEGLNELSKLNRLKSLYLGGCSGIRDEGI 384

Query: 463 RHLNH 467
             L+H
Sbjct: 385 AALSH 389


>gi|320166208|gb|EFW43107.1| tyrosine-protein kinase Src42A [Capsaspora owczarzaki ATCC 30864]
          Length = 1869

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 103/371 (27%), Positives = 163/371 (43%), Gaps = 11/371 (2%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
           QI+        GL+ L +L +  NN I    + AF+GL  LV+L L   + T I      
Sbjct: 118 QITTVPSSAFTGLTALQTL-YLYNNQIATVAINAFSGLTALVQLYLYNNQITSISANA-- 174

Query: 151 LKGLMKLESL--NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
             GL KL +L  N  W + I  S    L+ LT L       + V  S    L  LQ L L
Sbjct: 175 FSGLSKLNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTGLTALQTLYL 234

Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
            N +   +    +++ S L +L  L L+  Q++      FS +  L  L+L  N ++   
Sbjct: 235 YNNQ---IATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIP 291

Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
                GLT L  L LD+  I        TGL  L+ L L + Q+ +      SGL  L+ 
Sbjct: 292 SSAFTGLTALTQLRLDTNQITTVPSSAFTGLTALQTLYLYNNQIITVATNAFSGLAALQV 351

Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
           + L    I+       +GLS+L +L L    ++    +A T LT LT L L+  +IT   
Sbjct: 352 LRLDTNQITTVPANAFSGLSALNTLQLSNNWLSAIPSSAFTGLTALTQLQLYNNQITTVP 411

Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
           ++       L++L +    +    +     L++L  L L  N  +T  +    SGL+ L 
Sbjct: 412 SSAFTGLTALQTLYLYNNQIATVAINAFSGLTALVQLYLYNN-QITSISANAFSGLSKLN 470

Query: 449 SLNVSNSRITS 459
           +L ++N+ +++
Sbjct: 471 TLQLNNNWLSA 481



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 151/359 (42%), Gaps = 8/359 (2%)

Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER---CTRIHGGLVNLKGLMKLESL 160
           G+   T++ +  +N IT+    AF GL  L  L L               L  L +L+  
Sbjct: 56  GIPATTTILYLSSNQITSISSSAFTGLTALTYLQLNNNWLSAIPSSAFTGLTALTQLQLY 115

Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
           N    N IT       +GLT L++L +  +++    I    GL  L  L L    +T+  
Sbjct: 116 N----NQITTVPSSAFTGLTALQTLYLYNNQIATVAINAFSGLTALVQLYLYNNQITSIS 171

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
            ++ S L  L  L LN   LS      F+ + +L  L L  N+IT        GLT L++
Sbjct: 172 ANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTGLTALQT 231

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           L L +  I    +   +GL  L  L L   Q+ +      SGL+ L +++L    +S   
Sbjct: 232 LYLYNNQIATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIP 291

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
                GL++L  L LD  QIT    +A T LT L  L L+  +I             L+ 
Sbjct: 292 SSAFTGLTALTQLRLDTNQITTVPSSAFTGLTALQTLYLYNNQIITVATNAFSGLAALQV 351

Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
           L +    +T         LS+L  L LS N  L+       +GLT L  L + N++IT+
Sbjct: 352 LRLDTNQITTVPANAFSGLSALNTLQLSNNW-LSAIPSSAFTGLTALTQLQLYNNQITT 409



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 122/477 (25%), Positives = 199/477 (41%), Gaps = 43/477 (9%)

Query: 17  SRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQG----SSLLSVDLSGSDVTDS 72
           S  +T +S  AF       L    Y  +N+ W+  I S      ++L  + L  + +T  
Sbjct: 68  SNQITSISSSAFTG-----LTALTYLQLNNNWLSAIPSSAFTGLTALTQLQLYNNQITTV 122

Query: 73  GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
                   + LQ+L + +  QI+   +    GL+ L  L +  NN IT+    AF+GL  
Sbjct: 123 PSSAFTGLTALQTL-YLYNNQIATVAINAFSGLTALVQL-YLYNNQITSISANAFSGLSK 180

Query: 133 LVKLDLER------CTRIHGGLVNLK------------------GLMKLESLNIKWCNCI 168
           L  L L         +    GL  L                   GL  L++L + + N I
Sbjct: 181 LNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTGLTALQTLYL-YNNQI 239

Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
               +   SGLT L  L++  +++T        GL KL  L+L    ++A    + + L 
Sbjct: 240 ATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIPSSAFTGLT 299

Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
           +L  L L+  Q++      F+ + +L+ L L  N+I         GL  L+ L LD+  I
Sbjct: 300 ALTQLRLDTNQITTVPSSAFTGLTALQTLYLYNNQIITVATNAFSGLAALQVLRLDTNQI 359

Query: 289 GDEGLVNLTGLCNLKCLELSD---TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
                   +GL  L  L+LS+   + + SS    L+ LT L+  N   T +   +     
Sbjct: 360 TTVPANAFSGLSALNTLQLSNNWLSAIPSSAFTGLTALTQLQLYNNQITTVPSSAFT--- 416

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
           GL++L++L L   QI    + A + LT L  L L+  +IT   A        L +L++  
Sbjct: 417 GLTALQTLYLYNNQIATVAINAFSGLTALVQLYLYNNQITSISANAFSGLSKLNTLQLNN 476

Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
             L+         L++LT L L  N  +T       +GLT L  L + N++I +  +
Sbjct: 477 NWLSAIPSSAFTGLTALTQLLLYNN-QITTVPSSAFTGLTALQFLYLYNNQIATVAI 532



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 167/384 (43%), Gaps = 32/384 (8%)

Query: 104  GLSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 159
            G S LT+L+  R  NN IT+    AF GL  L  LDL   + T I  G     GL  L  
Sbjct: 678  GFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLDLSLNQLTSIPAGA--FSGLTALTQ 735

Query: 160  LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
            L + + N ++       +GLT L  L +  +++T        GL  L  L L G  +T  
Sbjct: 736  L-LLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAFTGLTALVQLQLYGNQITTI 794

Query: 220  CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
               + + + SL  L L   +++      F+ +  L +L++  N+IT        GLT + 
Sbjct: 795  SASAFAGMSSLVQLYLYSNRITAIFVNAFTGLTHLSLLDISNNQITSLPANAFTGLTAMT 854

Query: 280  SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-------- 331
             L+L +  +        TGL  L+ L L + Q+ S  +   + LT L  + L        
Sbjct: 855  QLSLYNNSLSAVPSSAFTGLTALQALWLYNNQITSVVVNAFTSLTALVQLQLYGNQITTI 914

Query: 332  ---SFTGISDGSLRKL-------------AGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
               +F+G+S  SL +L              GL++L  L L   QIT    +A T LT LT
Sbjct: 915  PASAFSGLSKLSLLQLNNNWLSAIPSSAFTGLTALTQLQLYNNQITTVPSSAFTGLTALT 974

Query: 376  HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
             L L+G +IT   A+       L++L +    +T         L++L  L+LS    +T 
Sbjct: 975  QLSLYGNQITTISASAFAGLTALQALYLNNNTITTIAANAFAGLTALNWLDLS-GSQITS 1033

Query: 436  KTLELISGLTGLVSLNVSNSRITS 459
                + S L  L  LN+ N+ +++
Sbjct: 1034 IPANVFSSLPALAQLNLYNNWLSA 1057



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 107/370 (28%), Positives = 160/370 (43%), Gaps = 30/370 (8%)

Query: 116 NNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
           NN IT     AF+GL  LV+L L   + T I      L GL  L  L + + N IT    
Sbjct: 620 NNQITTVPANAFSGLTALVQLQLYGNQITTIPSSA--LTGLSALTQL-LLYNNRITSVPA 676

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL---EGCPVTAACLDSLSALGSL 230
              SGLT L  L++  + +T        GL KLT L+L   +   + A     L+AL  L
Sbjct: 677 NGFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLDLSLNQLTSIPAGAFSGLTALTQL 736

Query: 231 FYLN---------------------LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
              N                     L   Q++      F+ + +L  L L  N+IT    
Sbjct: 737 LLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAFTGLTALVQLQLYGNQITTISA 796

Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
               G+++L  L L S  I    +   TGL +L  L++S+ Q+ S      +GLT +  +
Sbjct: 797 SAFAGMSSLVQLYLYSNRITAIFVNAFTGLTHLSLLDISNNQITSLPANAFTGLTAMTQL 856

Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
           +L    +S        GL++L++L L   QIT   + A TSLT L  L L+G +IT   A
Sbjct: 857 SLYNNSLSAVPSSAFTGLTALQALWLYNNQITSVVVNAFTSLTALVQLQLYGNQITTIPA 916

Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449
           +       L  L++    L+         L++LT L L  N  +T       +GLT L  
Sbjct: 917 SAFSGLSKLSLLQLNNNWLSAIPSSAFTGLTALTQLQLYNN-QITTVPSSAFTGLTALTQ 975

Query: 450 LNVSNSRITS 459
           L++  ++IT+
Sbjct: 976 LSLYGNQITT 985



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 146/340 (42%), Gaps = 6/340 (1%)

Query: 93   QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN 150
            QI+        G+S+L  L +  +N ITA  + AF GL +L  LD+   + T +      
Sbjct: 790  QITTISASAFAGMSSLVQL-YLYSNRITAIFVNAFTGLTHLSLLDISNNQITSLPANA-- 846

Query: 151  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
              GL  +  L++ + N ++       +GLT L++L +  +++T   +     L  L  L 
Sbjct: 847  FTGLTAMTQLSL-YNNSLSAVPSSAFTGLTALQALWLYNNQITSVVVNAFTSLTALVQLQ 905

Query: 211  LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
            L G  +T     + S L  L  L LN   LS      F+ + +L  L L  N+IT     
Sbjct: 906  LYGNQITTIPASAFSGLSKLSLLQLNNNWLSAIPSSAFTGLTALTQLQLYNNQITTVPSS 965

Query: 271  HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
               GLT L  L+L    I         GL  L+ L L++  + +      +GLT L  ++
Sbjct: 966  AFTGLTALTQLSLYGNQITTISASAFAGLTALQALYLNNNTITTIAANAFAGLTALNWLD 1025

Query: 331  LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
            LS + I+       + L +L  LNL    ++    +A T LT LT L ++G RIT   A 
Sbjct: 1026 LSGSQITSIPANVFSSLPALAQLNLYNNWLSAVPTSAFTGLTALTQLTMYGNRITTISAN 1085

Query: 391  YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
                   L  L +    +T         LS LT L LS N
Sbjct: 1086 AFTGLNALVQLFLQSNQITTISASAFTGLSLLTQLYLSNN 1125



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 173/418 (41%), Gaps = 33/418 (7%)

Query: 67  SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
           S +  S    L   + L+ LD N   QI+        GL+ L +L +  NN I      A
Sbjct: 288 SAIPSSAFTGLTALTQLR-LDTN---QITTVPSSAFTGLTALQTL-YLYNNQIITVATNA 342

Query: 127 FAGL--INLVKLDLERCTRIHGGLVNLKGLMKLESLNIK--WCNCITDSDMKPLSGLTNL 182
           F+GL  + +++LD  + T +        GL  L +L +   W + I  S    L+ LT L
Sbjct: 343 FSGLAALQVLRLDTNQITTVPANA--FSGLSALNTLQLSNNWLSAIPSSAFTGLTALTQL 400

Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN-------- 234
           +      + V  S    L  LQ L L N +   V       L+AL  L+  N        
Sbjct: 401 QLYNNQITTVPSSAFTGLTALQTLYLYNNQIATVAINAFSGLTALVQLYLYNNQITSISA 460

Query: 235 --------LNRCQLSDD-----GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
                   LN  QL+++         F+ + +L  L L  N+IT        GLT L+ L
Sbjct: 461 NAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTGLTALQFL 520

Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
            L +  I    +   +GL  L  L L   Q+ +      SGL+ L +++L    +S    
Sbjct: 521 YLYNNQIATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIPS 580

Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
               GL++L  L LD  QIT     A + LT L +L L+  +IT   A        L  L
Sbjct: 581 SAFTGLTALTQLRLDTNQITTVPANAFSGLTALLYLYLYNNQITTVPANAFSGLTALVQL 640

Query: 402 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
           ++ G  +T      +  LS+LT L L  N  +T       SGLT L  L + N+ ITS
Sbjct: 641 QLYGNQITTIPSSALTGLSALTQLLLYNN-RITSVPANGFSGLTALTDLRLFNNTITS 697



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 110/373 (29%), Positives = 159/373 (42%), Gaps = 11/373 (2%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
           QI+        GL+ L +L +  NN I    + AF+GL  LV+L L   + T I      
Sbjct: 406 QITTVPSSAFTGLTALQTL-YLYNNQIATVAINAFSGLTALVQLYLYNNQITSISANA-- 462

Query: 151 LKGLMKLESL--NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
             GL KL +L  N  W + I  S     +GLT L  L +  +++T    +   GL  L  
Sbjct: 463 FSGLSKLNTLQLNNNWLSAIPSSA---FTGLTALTQLLLYNNQITTVPSSAFTGLTALQF 519

Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
           L L    +    +++ S L +L  L L+  Q++      FS +  L  L+L  N ++   
Sbjct: 520 LYLYNNQIATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIP 579

Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
                GLT L  L LD+  I        +GL  L  L L + Q+ +      SGLT L  
Sbjct: 580 SSAFTGLTALTQLRLDTNQITTVPANAFSGLTALLYLYLYNNQITTVPANAFSGLTALVQ 639

Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
           + L    I+      L GLS+L  L L   +IT       + LT LT L LF   IT   
Sbjct: 640 LQLYGNQITTIPSSALTGLSALTQLLLYNNRITSVPANGFSGLTALTDLRLFNNTITSIL 699

Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
           A        L  L++    LT         L++LT L L  N  L+       +GLT L+
Sbjct: 700 ANAFTGLTKLTYLDLSLNQLTSIPAGAFSGLTALTQLLLYNNW-LSAVPSSAFTGLTALL 758

Query: 449 SLNVSNSRITSAG 461
            L + N++IT+  
Sbjct: 759 YLYLYNNQITTVA 771



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 157/382 (41%), Gaps = 27/382 (7%)

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
             GL+ LT L    NN IT     AF GL  L  L L         +    GL  L  L 
Sbjct: 487 FTGLTALTQL-LLYNNQITTVPSSAFTGLTALQFLYLYNNQIATVAINAFSGLTALVQLR 545

Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
           +   N IT       SGL+ L +L +  + ++    +   GL  LT L L+   +T    
Sbjct: 546 LD-TNQITTVPANAFSGLSKLNTLHLYNNWLSAIPSSAFTGLTALTQLRLDTNQITTVPA 604

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
           ++ S L +L YL L   Q++      FS + +L  L L  N+IT      L GL+ L  L
Sbjct: 605 NAFSGLTALLYLYLYNNQITTVPANAFSGLTALVQLQLYGNQITTIPSSALTGLSALTQL 664

Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISD 338
            L +  I        +GL  L  L L +  + S      +GLT L  ++LS    T I  
Sbjct: 665 LLYNNRITSVPANGFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLDLSLNQLTSIPA 724

Query: 339 GSLRKLAGLSSLKSLN--LDA-------------------RQITDTGLAALTSLTGLTHL 377
           G+   L  L+ L   N  L A                    QIT     A T LT L  L
Sbjct: 725 GAFSGLTALTQLLLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAFTGLTALVQL 784

Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
            L+G +IT   A+      +L  L +    +T   V     L+ L+LL++S N  +T   
Sbjct: 785 QLYGNQITTISASAFAGMSSLVQLYLYSNRITAIFVNAFTGLTHLSLLDISNN-QITSLP 843

Query: 438 LELISGLTGLVSLNVSNSRITS 459
               +GLT +  L++ N+ +++
Sbjct: 844 ANAFTGLTAMTQLSLYNNSLSA 865



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 138/323 (42%), Gaps = 19/323 (5%)

Query: 72   SGLIHLK--DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
            +GL HL   D SN          QI+        GL+ +T LS   NN+++A    AF G
Sbjct: 824  TGLTHLSLLDISN---------NQITSLPANAFTGLTAMTQLSLY-NNSLSAVPSSAFTG 873

Query: 130  LINLVKLDL---ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
            L  L  L L   +  + +     +L  L++L+     + N IT       SGL+ L  LQ
Sbjct: 874  LTALQALWLYNNQITSVVVNAFTSLTALVQLQ----LYGNQITTIPASAFSGLSKLSLLQ 929

Query: 187  ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
            ++ + ++    +   GL  LT L L    +T     + + L +L  L+L   Q++     
Sbjct: 930  LNNNWLSAIPSSAFTGLTALTQLQLYNNQITTVPSSAFTGLTALTQLSLYGNQITTISAS 989

Query: 247  KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
             F+ + +L+ L L  N IT        GLT L  L+L    I        + L  L  L 
Sbjct: 990  AFAGLTALQALYLNNNTITTIAANAFAGLTALNWLDLSGSQITSIPANVFSSLPALAQLN 1049

Query: 307  LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
            L +  + +      +GLT L  + +    I+  S     GL++L  L L + QIT    +
Sbjct: 1050 LYNNWLSAVPTSAFTGLTALTQLTMYGNRITTISANAFTGLNALVQLFLQSNQITTISAS 1109

Query: 367  ALTSLTGLTHLDLFGARITDSGA 389
            A T L+ LT L L   +IT   A
Sbjct: 1110 AFTGLSLLTQLYLSNNQITTISA 1132


>gi|290984286|ref|XP_002674858.1| predicted protein [Naegleria gruberi]
 gi|284088451|gb|EFC42114.1| predicted protein [Naegleria gruberi]
          Length = 385

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 106/191 (55%), Gaps = 1/191 (0%)

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           L NL +LN+ SC IG+EG   +  L NL  L++ +  +GS G+++++ L+NL S+N+   
Sbjct: 182 LNNLITLNITSCNIGEEGSKEIAKLSNLTELKIDNNNIGSEGVKYIAQLSNLTSLNVYNN 241

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            I     +++  L +LK+LN+D   I D G   ++ L  LT L+++   I   GA  +  
Sbjct: 242 NIGTEGAKEIGKLLNLKTLNIDNNYIGDEGAQEISKLINLTSLNMYKNSIGYEGAKAISK 301

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
             NLR+L I    + + G K I  L++LT LN+S N N+ D+  + I+ L+ L  L + N
Sbjct: 302 LGNLRALTIYNNYIGEEGAKEISKLTNLTSLNISNN-NIGDEGAKEITKLSNLTGLKIDN 360

Query: 455 SRITSAGLRHL 465
           + I     + +
Sbjct: 361 NNIGYEAAKEI 371



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 99/196 (50%)

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           +  L +L  LN+  C + ++G ++ +K+ +L  L +  N I  E + ++  L+NL SLN+
Sbjct: 179 IGKLNNLITLNITSCNIGEEGSKEIAKLSNLTELKIDNNNIGSEGVKYIAQLSNLTSLNV 238

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
            +  IG EG   +  L NLK L + +  +G  G + +S L NL S+N+    I     + 
Sbjct: 239 YNNNIGTEGAKEIGKLLNLKTLNIDNNYIGDEGAQEISKLINLTSLNMYKNSIGYEGAKA 298

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           ++ L +L++L +    I + G   ++ LT LT L++    I D GA  +    NL  L+I
Sbjct: 299 ISKLGNLRALTIYNNYIGEEGAKEISKLTNLTSLNISNNNIGDEGAKEITKLSNLTGLKI 358

Query: 404 CGGGLTDAGVKHIKDL 419
               +     K I+ L
Sbjct: 359 DNNNIGYEAAKEIRQL 374



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 91/181 (50%)

Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
           K+ +L  LN+    I +E    +  L+NL  L +D+  IG EG+  +  L NL  L + +
Sbjct: 181 KLNNLITLNITSCNIGEEGSKEIAKLSNLTELKIDNNNIGSEGVKYIAQLSNLTSLNVYN 240

Query: 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369
             +G+ G + +  L NL+++N+    I D   ++++ L +L SLN+    I   G  A++
Sbjct: 241 NNIGTEGAKEIGKLLNLKTLNIDNNYIGDEGAQEISKLINLTSLNMYKNSIGYEGAKAIS 300

Query: 370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 429
            L  L  L ++   I + GA  +    NL SL I    + D G K I  LS+LT L +  
Sbjct: 301 KLGNLRALTIYNNYIGEEGAKEISKLTNLTSLNISNNNIGDEGAKEITKLSNLTGLKIDN 360

Query: 430 N 430
           N
Sbjct: 361 N 361



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 86/174 (49%), Gaps = 3/174 (1%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L++++++  ++ + G   +   SNL  L  +    I   G++++  LSNLTSL+   N
Sbjct: 183 NNLITLNITSCNIGEEGSKEIAKLSNLTELKIDNN-NIGSEGVKYIAQLSNLTSLNVYNN 241

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N I  +G K    L+NL  L+++       G   +  L+ L SLN+ + N I     K +
Sbjct: 242 N-IGTEGAKEIGKLLNLKTLNIDNNYIGDEGAQEISKLINLTSLNM-YKNSIGYEGAKAI 299

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           S L NL++L I  + + + G   +  L  LT LN+    +       ++ L +L
Sbjct: 300 SKLGNLRALTIYNNYIGEEGAKEISKLTNLTSLNISNNNIGDEGAKEITKLSNL 353


>gi|46446627|ref|YP_007992.1| hypothetical protein pc0993 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400268|emb|CAF23717.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 478

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/237 (36%), Positives = 125/237 (52%), Gaps = 11/237 (4%)

Query: 20  LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHL 77
           LT+    A ++C  L+ L       + D  +  +AS  ++L  + L G D VTD+GL HL
Sbjct: 238 LTDAHFSALKECKNLKILTFETCQALTDDGLAHLASL-TALQHLGLRGCDKVTDAGLAHL 296

Query: 78  KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
                LQ LD +FC  I+D GL HL  L+ L  L  ++   +T  G+     L  L  LD
Sbjct: 297 TSLRALQYLDLSFCRNITDAGLAHLTPLTALQRLLLKKCENLTGAGLAHLTPLKALQYLD 356

Query: 138 LERCTRI-HGGLVNLKGLMKLESLNIKWCNCITD---SDMKPLSGLTNLKSLQISCSKVT 193
           L     +   GL +L+ L+ L+ L++  C  +TD   + + PL  LT+LK   I C K+T
Sbjct: 357 LSYWDNLTDDGLAHLRPLVALQHLDLANCYELTDAGLAHLTPLVALTHLK--LIWCHKLT 414

Query: 194 DSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKF 248
           D+G+A+L+ L  L  LNL  C  +T A L  L  L +L YLNL+ C +L+D G   F
Sbjct: 415 DAGLAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQYLNLSDCRKLTDTGLASF 471



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 83/228 (36%), Positives = 131/228 (57%), Gaps = 8/228 (3%)

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLL 209
           LK    L+ L  + C  +TD  +  L+ LT L+ L +  C KVTD+G+A+L  L+ L  L
Sbjct: 246 LKECKNLKILTFETCQALTDDGLAHLASLTALQHLGLRGCDKVTDAGLAHLTSLRALQYL 305

Query: 210 NLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITD 266
           +L  C  +T A L  L+ L +L  L L +C+ L+  G    + + +L+ L+L + + +TD
Sbjct: 306 DLSFCRNITDAGLAHLTPLTALQRLLLKKCENLTGAGLAHLTPLKALQYLDLSYWDNLTD 365

Query: 267 ECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLT 324
           + L HL+ L  L+ L+L +C  + D GL +LT L  L  L+L    ++  +GL HL  L 
Sbjct: 366 DGLAHLRPLVALQHLDLANCYELTDAGLAHLTPLVALTHLKLIWCHKLTDAGLAHLRPLV 425

Query: 325 NLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS 370
            L+ +NLS    ++D  L  L  L++L+ LNL D R++TDTGLA+  +
Sbjct: 426 ALKHLNLSSCRNLTDAGLAHLIPLTALQYLNLSDCRKLTDTGLASFKA 473



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 91/254 (35%), Positives = 130/254 (51%), Gaps = 30/254 (11%)

Query: 216 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLK 273
           +T A   +L    +L  L    CQ L+DDG    + + +L+ L L G +++TD  L HL 
Sbjct: 238 LTDAHFSALKECKNLKILTFETCQALTDDGLAHLASLTALQHLGLRGCDKVTDAGLAHLT 297

Query: 274 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINL 331
            L  L+ L+L  C  I D GL +LT L  L+ L L   + +  +GL HL+ L  L+ ++L
Sbjct: 298 SLRALQYLDLSFCRNITDAGLAHLTPLTALQRLLLKKCENLTGAGLAHLTPLKALQYLDL 357

Query: 332 SFT-GISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
           S+   ++D  L  L  L +L+ L+L +  ++TD GLA LT L  LTHL L          
Sbjct: 358 SYWDNLTDDGLAHLRPLVALQHLDLANCYELTDAGLAHLTPLVALTHLKL---------- 407

Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449
                        I    LTDAG+ H++ L +L  LNLS   NLTD  L  +  LT L  
Sbjct: 408 -------------IWCHKLTDAGLAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQY 454

Query: 450 LNVSNSR-ITSAGL 462
           LN+S+ R +T  GL
Sbjct: 455 LNLSDCRKLTDTGL 468



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 120/230 (52%), Gaps = 6/230 (2%)

Query: 86  LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI- 144
           L F+    ++D     L+   NL  L+F    A+T  G+   A L  L  L L  C ++ 
Sbjct: 230 LHFSNQTYLTDAHFSALKECKNLKILTFETCQALTDDGLAHLASLTALQHLGLRGCDKVT 289

Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGL 203
             GL +L  L  L+ L++ +C  ITD+ +  L+ LT L+ L +  C  +T +G+A+L  L
Sbjct: 290 DAGLAHLTSLRALQYLDLSFCRNITDAGLAHLTPLTALQRLLLKKCENLTGAGLAHLTPL 349

Query: 204 QKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF 261
           + L  L+L     +T   L  L  L +L +L+L  C +L+D G    + + +L  L L +
Sbjct: 350 KALQYLDLSYWDNLTDDGLAHLRPLVALQHLDLANCYELTDAGLAHLTPLVALTHLKLIW 409

Query: 262 -NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD 309
            +++TD  L HL+ L  L+ LNL SC  + D GL +L  L  L+ L LSD
Sbjct: 410 CHKLTDAGLAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQYLNLSD 459



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 2/138 (1%)

Query: 67  SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
            ++T +GL HL     LQ LD ++   ++D GL HLR L  L  L       +T  G+  
Sbjct: 336 ENLTGAGLAHLTPLKALQYLDLSYWDNLTDDGLAHLRPLVALQHLDLANCYELTDAGLAH 395

Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
              L+ L  L L  C ++   GL +L+ L+ L+ LN+  C  +TD+ +  L  LT L+ L
Sbjct: 396 LTPLVALTHLKLIWCHKLTDAGLAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQYL 455

Query: 186 QIS-CSKVTDSGIAYLKG 202
            +S C K+TD+G+A  K 
Sbjct: 456 NLSDCRKLTDTGLASFKA 473



 Score = 38.1 bits (87), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (53%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           +TD+GL HL+    L+ L+ + C  ++D GL HL  L+ L  L+      +T  G+ +F 
Sbjct: 413 LTDAGLAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQYLNLSDCRKLTDTGLASFK 472

Query: 129 GLI 131
             I
Sbjct: 473 ASI 475


>gi|87309359|ref|ZP_01091495.1| hypothetical protein DSM3645_22189 [Blastopirellula marina DSM
           3645]
 gi|87287998|gb|EAQ79896.1| hypothetical protein DSM3645_22189 [Blastopirellula marina DSM
           3645]
          Length = 351

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 85/274 (31%), Positives = 130/274 (47%), Gaps = 4/274 (1%)

Query: 142 TRIHGGLVNLKGL---MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
           +R+    V+ +GL   + L  L+++    +TD     L+ LT L+SL +    +T   + 
Sbjct: 58  SRVVATDVDFRGLGEAVTLRKLSLQDVG-MTDESASELAPLTKLQSLDMRGVSITGEALQ 116

Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
            L  L +L  L   G P+  A L  L+ L  L  L L+    S  G E       LK L 
Sbjct: 117 SLGQLTELERLLFRGQPIRDADLAQLAPLTKLKVLGLDDTDASAGGLEHLQNAHDLKELY 176

Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
           L      DE L  L     L  L L    +   G+  L  + +L+ L++S+T+V  +G  
Sbjct: 177 LFNTPTVDEELAVLTKFPALAKLRLRGSDVTGSGMAELAKIGSLEDLDVSETKVDDAGAA 236

Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
            ++ L  L  +NL  T ++D SL  LA L++L+ LNLDA  +TD  LA L ++  L  L 
Sbjct: 237 EIAKLPKLTDLNLWKTKVTDASLPDLAKLTTLERLNLDANDLTDANLALLAAMPNLKWLH 296

Query: 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
           L    +TD+G   L   K+L +L +    +TD G
Sbjct: 297 LGSTSVTDAGILELAKSKSLETLIVTRTKVTDDG 330



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 116/241 (48%), Gaps = 1/241 (0%)

Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
           +L  L+L    ++D+   + + +  L+ L++    IT E L  L  LT LE L      I
Sbjct: 75  TLRKLSLQDVGMTDESASELAPLTKLQSLDMRGVSITGEALQSLGQLTELERLLFRGQPI 134

Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
            D  L  L  L  LK L L DT   + GL HL    +L+ + L  T   D  L  L    
Sbjct: 135 RDADLAQLAPLTKLKVLGLDDTDASAGGLEHLQNAHDLKELYLFNTPTVDEELAVLTKFP 194

Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
           +L  L L    +T +G+A L  +  L  LD+   ++ D+GAA +     L  L +    +
Sbjct: 195 ALAKLRLRGSDVTGSGMAELAKIGSLEDLDVSETKVDDAGAAEIAKLPKLTDLNLWKTKV 254

Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHA 468
           TDA +  +  L++L  LNL  N +LTD  L L++ +  L  L++ ++ +T AG+  L  +
Sbjct: 255 TDASLPDLAKLTTLERLNLDAN-DLTDANLALLAAMPNLKWLHLGSTSVTDAGILELAKS 313

Query: 469 R 469
           +
Sbjct: 314 K 314



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 27/227 (11%)

Query: 66  GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
           G  + D+ L  L   + L+ L  +     S GGLEHL+   +L  L +  N     + + 
Sbjct: 131 GQPIRDADLAQLAPLTKLKVLGLDDT-DASAGGLEHLQNAHDLKEL-YLFNTPTVDEELA 188

Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
                  L KL      R+ G                   + +T S M  L+ + +L+ L
Sbjct: 189 VLTKFPALAKL------RLRG-------------------SDVTGSGMAELAKIGSLEDL 223

Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
            +S +KV D+G A +  L KLT LNL    VT A L  L+ L +L  LNL+   L+D   
Sbjct: 224 DVSETKVDDAGAAEIAKLPKLTDLNLWKTKVTDASLPDLAKLTTLERLNLDANDLTDANL 283

Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
              + + +LK L+LG   +TD  ++ L    +LE+L +    + D+G
Sbjct: 284 ALLAAMPNLKWLHLGSTSVTDAGILELAKSKSLETLIVTRTKVTDDG 330



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 29/185 (15%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
           L++L L   P V+++    + ++  +L  + L GSDVT SG+  L    +L+ LD +   
Sbjct: 172 LKELYLFNTPTVDEEL--AVLTKFPALAKLRLRGSDVTGSGMAELAKIGSLEDLDVSET- 228

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           ++ D G   +  L  LT L+  +     A                          L +L 
Sbjct: 229 KVDDAGAAEIAKLPKLTDLNLWKTKVTDA-------------------------SLPDLA 263

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
            L  LE LN+   N +TD+++  L+ + NLK L +  + VTD+GI  L   + L  L + 
Sbjct: 264 KLTTLERLNLD-ANDLTDANLALLAAMPNLKWLHLGSTSVTDAGILELAKSKSLETLIVT 322

Query: 213 GCPVT 217
              VT
Sbjct: 323 RTKVT 327


>gi|51850107|dbj|BAD42395.1| leucine-rich repeat protein [Ralstonia solanacearum]
          Length = 538

 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 128/482 (26%), Positives = 212/482 (43%), Gaps = 63/482 (13%)

Query: 1   MLPRDISQQI--------FNELVYSRCLTEVSLEA-FRDCALQD-------LCLGQYPGV 44
            LP DI ++I           L  +    + ++EA  R+  ++D       L  G YP  
Sbjct: 66  QLPPDIFREIARRSDPLTVQRLRVASKPVKAAIEADMRELVIKDRAGLAGVLRAGNYP-- 123

Query: 45  NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHLR 103
                        +L  + L+G+  TD  L  L   ++L++LD + C   I+  G+ HL 
Sbjct: 124 -------------ALEKLTLAGT-FTDDDLRGLP--ASLKALDLSRCRGPITAAGIAHLS 167

Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
            L  L  L+ R N  I A+G +  A    L  L++        G   L    +L +LN+ 
Sbjct: 168 RLP-LVRLNVR-NKRIGAEGARLLANHPTLTSLNVSNGRIGPEGAQALAANTRLTTLNVS 225

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
             N I  +  K L+    L+SL +S +++ D G   L                 AAC   
Sbjct: 226 -GNRIGVAGAKALAANQTLRSLDVSDNRIGDEGAREL-----------------AACTQ- 266

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
                 L  L+ NR  +  DG    +   +L  L +G NEI D  ++ L     L +LN+
Sbjct: 267 ------LTTLDANRNGIGVDGATALAASRTLTSLAIGGNEIGDAGVLALAANARLTTLNV 320

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
           +S G+G +G+  L     L  L L    +G++G   L+  T+L +++L  + I     + 
Sbjct: 321 ESTGVGADGVKALAASKTLTWLRLDGNDIGNAGATALAASTSLTTLHLEHSRIGAEGAQA 380

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           LA  + L +L+L    I D G+  L++   L  L +    + D+ A  L   K L +L+I
Sbjct: 381 LAANTKLTTLDLGYNDIGDAGVRTLSANATLVWLSVRRNNLEDASAVSLAAGKTLTTLDI 440

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
            G G+ D G K +    +LT L++S N ++ +     ++    LVSL++ N+R+  +G R
Sbjct: 441 SGNGIQDQGAKALAANPTLTTLDVSSN-DIRNAGARALAANARLVSLDLRNNRMEESGTR 499

Query: 464 HL 465
            L
Sbjct: 500 AL 501


>gi|320164611|gb|EFW41510.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 853

 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 121/415 (29%), Positives = 172/415 (41%), Gaps = 51/415 (12%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           QI+        GL+ LT LS   N  IT+  + AFAGL  L +LDL              
Sbjct: 69  QITGIAPSAFTGLTALTVLSLSYNQ-ITSIPVSAFAGLDALTRLDLSSNLITSISASAFP 127

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS------------------------ 188
            L  L  LN++  N IT       +GLT L+ L +S                        
Sbjct: 128 SLTALTELNLQG-NLITSIPASLFTGLTALRWLPLSNNQITSIAANAFNGLSAVTLIYLQ 186

Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
            +++TD   A   GL  LT L L G  +T+    + + L SL  L+L   ++++     F
Sbjct: 187 TNQITDLSPATFTGLAALTELYLMGNQITSIHASTFAGLTSLENLDLQDNKITEVPASAF 246

Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
           + + +L  L L  N+IT+       GLT LE LNL    I +        L  L+ L L 
Sbjct: 247 TDLSALTGLTLQDNQITEIPASAFAGLTVLEILNLQGNQITNIPETVFADLTALETLNLQ 306

Query: 309 DTQVGSSGLRHLSGLTNLESINLS-----------FTG-------------ISDGSLRKL 344
           D Q+ S      + LT L S++L            FTG             I+D S    
Sbjct: 307 DNQITSIPASAFADLTALRSLDLQDNNITSIPASVFTGLSALNELKLHTNKITDLSASVF 366

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
           A L++L  L L + QIT+    A T LT LT LDL   +IT        +   LR L + 
Sbjct: 367 ASLTALAVLELQSNQITEISANAFTGLTALTKLDLSSCQITSFSVDAFTSLTALRDLYLH 426

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
              +T         L++L +L L+ N  +T       +GLT L +L +S + ITS
Sbjct: 427 FNQITSIPASAFTGLTALYVLILAYN-QITSLPTNTFTGLTALNTLTLSFNPITS 480



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 107/369 (28%), Positives = 163/369 (44%), Gaps = 7/369 (1%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
           QI+        GLS +T L + + N IT      F GL  L +L L   + T IH     
Sbjct: 165 QITSIAANAFNGLSAVT-LIYLQTNQITDLSPATFTGLAALTELYLMGNQITSIHAS--T 221

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
             GL  LE+L+++  N IT+      + L+ L  L +  +++T+   +   GL  L +LN
Sbjct: 222 FAGLTSLENLDLQ-DNKITEVPASAFTDLSALTGLTLQDNQITEIPASAFAGLTVLEILN 280

Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
           L+G  +T       + L +L  LNL   Q++      F+ + +L+ L+L  N IT     
Sbjct: 281 LQGNQITNIPETVFADLTALETLNLQDNQITSIPASAFADLTALRSLDLQDNNITSIPAS 340

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
              GL+ L  L L +  I D        L  L  LEL   Q+        +GLT L  ++
Sbjct: 341 VFTGLSALNELKLHTNKITDLSASVFASLTALAVLELQSNQITEISANAFTGLTALTKLD 400

Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
           LS   I+  S+     L++L+ L L   QIT    +A T LT L  L L   +IT     
Sbjct: 401 LSSCQITSFSVDAFTSLTALRDLYLHFNQITSIPASAFTGLTALYVLILAYNQITSLPTN 460

Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
                  L +L +    +T        DL+SL  L L+ N  +T  +    +GL GL  L
Sbjct: 461 TFTGLTALNTLTLSFNPITSISANTFTDLTSLFFLILNNN-QITSISANAFAGLPGLKYL 519

Query: 451 NVSNSRITS 459
            +S++  T+
Sbjct: 520 VLSDNPFTT 528



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 145/320 (45%), Gaps = 7/320 (2%)

Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
           E  T I  G+     +++L S      N IT       +GLT L  L +S +++T   ++
Sbjct: 47  ETLTTIPTGIPVDTTMLRLSS------NQITGIAPSAFTGLTALTVLSLSYNQITSIPVS 100

Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
              GL  LT L+L    +T+    +  +L +L  LNL    ++      F+ + +L+ L 
Sbjct: 101 AFAGLDALTRLDLSSNLITSISASAFPSLTALTELNLQGNLITSIPASLFTGLTALRWLP 160

Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
           L  N+IT        GL+ +  + L +  I D      TGL  L  L L   Q+ S    
Sbjct: 161 LSNNQITSIAANAFNGLSAVTLIYLQTNQITDLSPATFTGLAALTELYLMGNQITSIHAS 220

Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
             +GLT+LE+++L    I++        LS+L  L L   QIT+   +A   LT L  L+
Sbjct: 221 TFAGLTSLENLDLQDNKITEVPASAFTDLSALTGLTLQDNQITEIPASAFAGLTVLEILN 280

Query: 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
           L G +IT+       +   L +L +    +T        DL++L  L+L  N N+T    
Sbjct: 281 LQGNQITNIPETVFADLTALETLNLQDNQITSIPASAFADLTALRSLDLQDN-NITSIPA 339

Query: 439 ELISGLTGLVSLNVSNSRIT 458
            + +GL+ L  L +  ++IT
Sbjct: 340 SVFTGLSALNELKLHTNKIT 359



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 103/354 (29%), Positives = 153/354 (43%), Gaps = 13/354 (3%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ---ISDGGLEHLRGLSNLTSLSF 113
           ++L  + L G+ +T    IH    + L SL+ N  +Q   I++        LS LT L+ 
Sbjct: 202 AALTELYLMGNQITS---IHASTFAGLTSLE-NLDLQDNKITEVPASAFTDLSALTGLTL 257

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
           + +N IT     AFAGL  L  L+L+  + T I   +     L  LE+LN++  N IT  
Sbjct: 258 Q-DNQITEIPASAFAGLTVLEILNLQGNQITNIPETV--FADLTALETLNLQ-DNQITSI 313

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
                + LT L+SL +  + +T    +   GL  L  L L    +T       ++L +L 
Sbjct: 314 PASAFADLTALRSLDLQDNNITSIPASVFTGLSALNELKLHTNKITDLSASVFASLTALA 373

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
            L L   Q+++     F+ + +L  L+L   +IT   +     LT L  L L    I   
Sbjct: 374 VLELQSNQITEISANAFTGLTALTKLDLSSCQITSFSVDAFTSLTALRDLYLHFNQITSI 433

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
                TGL  L  L L+  Q+ S      +GLT L ++ LSF  I+  S      L+SL 
Sbjct: 434 PASAFTGLTALYVLILAYNQITSLPTNTFTGLTALNTLTLSFNPITSISANTFTDLTSLF 493

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
            L L+  QIT     A   L GL +L L     T       +   N  SL + G
Sbjct: 494 FLILNNNQITSISANAFAGLPGLKYLVLSDNPFTTLPPGLFQGLPNGLSLSLSG 547



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 139/319 (43%), Gaps = 16/319 (5%)

Query: 20  LTEVSLEAFRD-CALQDLCLGQYPGVNDKWMDVIASQ--GSSLLSV-DLSGSDVTDSGLI 75
           +TEV   AF D  AL  L L      +++  ++ AS   G ++L + +L G+ +T+    
Sbjct: 238 ITEVPASAFTDLSALTGLTLQ-----DNQITEIPASAFAGLTVLEILNLQGNQITNIPET 292

Query: 76  HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL--INL 133
              D + L++L+     QI+         L+ L SL  + NN IT+     F GL  +N 
Sbjct: 293 VFADLTALETLNLQDN-QITSIPASAFADLTALRSLDLQDNN-ITSIPASVFTGLSALNE 350

Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
           +KL   + T +   +     L  L  L ++  N IT+      +GLT L  L +S  ++T
Sbjct: 351 LKLHTNKITDLSASV--FASLTALAVLELQ-SNQITEISANAFTGLTALTKLDLSSCQIT 407

Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
              +     L  L  L L    +T+    + + L +L+ L L   Q++      F+ + +
Sbjct: 408 SFSVDAFTSLTALRDLYLHFNQITSIPASAFTGLTALYVLILAYNQITSLPTNTFTGLTA 467

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
           L  L L FN IT         LT+L  L L++  I         GL  LK L LSD    
Sbjct: 468 LNTLTLSFNPITSISANTFTDLTSLFFLILNNNQITSISANAFAGLPGLKYLVLSDNPFT 527

Query: 314 SSGLRHLSGLTNLESINLS 332
           +       GL N  S++LS
Sbjct: 528 TLPPGLFQGLPNGLSLSLS 546


>gi|158336627|ref|YP_001517801.1| internalin A protein [Acaryochloris marina MBIC11017]
 gi|158306868|gb|ABW28485.1| internalin A protein [Acaryochloris marina MBIC11017]
          Length = 627

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 140/479 (29%), Positives = 227/479 (47%), Gaps = 72/479 (15%)

Query: 23  VSLEAFRDCALQDLCLGQYPGVNDKWM-DVIASQGSSLLS------VDLSGSDVTDSGLI 75
           +SL+      L D  + QYP ++  ++ D+++ +     S      + LSG DVT +  +
Sbjct: 55  LSLQGVDGHELVDASIEQYPHLSALYLFDIVSPEIVPFASLPGLSTIALSGQDVTAASYL 114

Query: 76  H--------------------LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
                                L D  NL  LD +   QI+D  L  ++ L  LTSL    
Sbjct: 115 QPTTNLTTVYLKTTNISDYSFLSDLKNLTHLDLSNN-QIAD--LSFIQDLKQLTSLGLAS 171

Query: 116 NNAITAQGMK----------------AFAGLINLVKL-DLERCTRIHGGLVNLKGLMKLE 158
           N  +   G+K                 ++ L+NL +L  L    R    L  L+ L  L 
Sbjct: 172 NKIVDISGLKDLTKLNTLNLRSNAIDDYSVLLNLKELRQLTVSVREATDLAFLQDLKDLT 231

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
            L++ + + I  SD+  L  L  L  L +  +++  S IA L  LQ+LT L+L    ++ 
Sbjct: 232 HLDLSYNHWI--SDISVLRNLPKLTHLDLGSNQI--SNIAVLLDLQQLTHLSLSSNQISD 287

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
             +  L  L  L  L+++  +++D        +  L  L++  NE++D  +  L+ LT L
Sbjct: 288 VSV--LQTLQGLERLDVSANEIADIAI--LQNLQGLTHLDISSNEVSDISV--LQDLTTL 341

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
             LN+ S  I D  +  L GL  L  L++SD Q+  S +  L GL +L S+NLS+  +SD
Sbjct: 342 TQLNVSSNEIIDYSV--LQGLTQLTSLDVSDNQM--SEISDLQGLHSLTSLNLSYNQLSD 397

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
            S+  L  L  L +LNL    ++D  +A L +   LT L+L   +ITD   ++L++ K L
Sbjct: 398 ISV--LQDLKQLATLNLSYNPVSD--IAVLQNFKDLTTLNLSFTQITD--LSHLQDLKGL 451

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
            SL++    +TD  +  ++DL  L  LN+S N  L+D  +  +  L GL SLN+S ++I
Sbjct: 452 ISLDLHSNQITD--ISALQDLEGLYRLNVSDN-QLSD--IAALRKLKGLFSLNLSINQI 505


>gi|290978242|ref|XP_002671845.1| predicted protein [Naegleria gruberi]
 gi|284085417|gb|EFC39101.1| predicted protein [Naegleria gruberi]
          Length = 439

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 158/339 (46%), Gaps = 5/339 (1%)

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIK 163
           L NLT +    +N I+ + +K F  L +L  L +  C  I   G   L  L +L  LNI 
Sbjct: 99  LKNLTRIDIS-DNEISDERVKHFGNLTHLTNLVI-NCNDIGVEGAKCLCQLNQLTRLNIG 156

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
             N +     K +S L NL  L I+ + + D G  ++  +++LT LNL    +       
Sbjct: 157 -NNSLETEGAKYISELKNLTKLDIARNCIGDRGAQFITEMKQLTSLNLNRNGIEYLGAKF 215

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           +S +  L  L+++   +  +G ++ SK+  L  L +  N I DE  +H+  +  L +L++
Sbjct: 216 ISEMYQLTSLDISNNDIGSEGAKQISKLDQLTKLYIYDNNIGDEGAMHISEMKQLTNLDI 275

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
               I  EG  ++  L  L  L +    +G +G +H+S + NL  + +    I       
Sbjct: 276 SRNDIDSEGAKSICELYQLTNLNICSNYIGETGAKHISEMNNLTILEIGSNEIGSEGAYH 335

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           ++ +  L  L + A  I + G   ++ +  LT LD++   I D G  ++   K L  L++
Sbjct: 336 ISRMHQLTRLMIFANDIGEKGAKHVSEMKQLTKLDIYDNNIGDEGTIHISEMKQLTYLDV 395

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
               +   G ++I+ L+ LT LN+  N + +D   ELI 
Sbjct: 396 SANNIGHEGAEYIRKLNRLTFLNVHYN-SFSDSESELIE 433



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 110/221 (49%), Gaps = 1/221 (0%)

Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
           C+ F  + +L  +++  NEI+DE + H   LT+L +L ++   IG EG   L  L  L  
Sbjct: 93  CQIFECLKNLTRIDISDNEISDERVKHFGNLTHLTNLVINCNDIGVEGAKCLCQLNQLTR 152

Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
           L + +  + + G +++S L NL  ++++   I D   + +  +  L SLNL+   I   G
Sbjct: 153 LNIGNNSLETEGAKYISELKNLTKLDIARNCIGDRGAQFITEMKQLTSLNLNRNGIEYLG 212

Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
              ++ +  LT LD+    I   GA  +     L  L I    + D G  HI ++  LT 
Sbjct: 213 AKFISEMYQLTSLDISNNDIGSEGAKQISKLDQLTKLYIYDNNIGDEGAMHISEMKQLTN 272

Query: 425 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           L++S+N ++  +  + I  L  L +LN+ ++ I   G +H+
Sbjct: 273 LDISRN-DIDSEGAKSICELYQLTNLNICSNYIGETGAKHI 312



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 132/310 (42%), Gaps = 29/310 (9%)

Query: 55  QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF-NFCIQISDGGLEHLRGLSNLTSLSF 113
           Q + L  +++  + +   G  ++ +  NL  LD    CI   D G + +  +  LTSL+ 
Sbjct: 146 QLNQLTRLNIGNNSLETEGAKYISELKNLTKLDIARNCI--GDRGAQFITEMKQLTSLNL 203

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
            R N I   G K  + +  L  LD+                           N I     
Sbjct: 204 NR-NGIEYLGAKFISEMYQLTSLDISN-------------------------NDIGSEGA 237

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           K +S L  L  L I  + + D G  ++  +++LT L++    + +    S+  L  L  L
Sbjct: 238 KQISKLDQLTKLYIYDNNIGDEGAMHISEMKQLTNLDISRNDIDSEGAKSICELYQLTNL 297

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           N+    + + G +  S++ +L +L +G NEI  E   H+  +  L  L + +  IG++G 
Sbjct: 298 NICSNYIGETGAKHISEMNNLTILEIGSNEIGSEGAYHISRMHQLTRLMIFANDIGEKGA 357

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
            +++ +  L  L++ D  +G  G  H+S +  L  +++S   I       +  L+ L  L
Sbjct: 358 KHVSEMKQLTKLDIYDNNIGDEGTIHISEMKQLTYLDVSANNIGHEGAEYIRKLNRLTFL 417

Query: 354 NLDARQITDT 363
           N+     +D+
Sbjct: 418 NVHYNSFSDS 427



 Score = 45.1 bits (105), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 31/223 (13%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+   L S+D+S +D+   G   +     L  L + +   I D G  H+  +  LT+L  
Sbjct: 217 SEMYQLTSLDISNNDIGSEGAKQISKLDQLTKL-YIYDNNIGDEGAMHISEMKQLTNLDI 275

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--------------------------G 147
            RN+ I ++G K+   L  L  L++  C+   G                          G
Sbjct: 276 SRND-IDSEGAKSICELYQLTNLNI--CSNYIGETGAKHISEMNNLTILEIGSNEIGSEG 332

Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
             ++  + +L  L I + N I +   K +S +  L  L I  + + D G  ++  +++LT
Sbjct: 333 AYHISRMHQLTRLMI-FANDIGEKGAKHVSEMKQLTKLDIYDNNIGDEGTIHISEMKQLT 391

Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
            L++    +     + +  L  L +LN++    SD   E   K
Sbjct: 392 YLDVSANNIGHEGAEYIRKLNRLTFLNVHYNSFSDSESELIEK 434


>gi|168054406|ref|XP_001779622.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668936|gb|EDQ55533.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 627

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 126/459 (27%), Positives = 212/459 (46%), Gaps = 67/459 (14%)

Query: 18  RCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIH 76
           R +T+V L A R C  L+ L L    G+ D  +  +A+    L ++DLS ++V+D G+  
Sbjct: 145 RDVTDVGLSALRRCTELRILGLKYCSGIGDSGIQNVATGCPQLRNIDLSFTEVSDKGVSS 204

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGL-INLV 134
           L    NL+ L    CI ++D GL  LR G  +L  L   + + ++++G+ A  G+ + L 
Sbjct: 205 LALLKNLECLSIISCINVTDKGLSCLRSGCMSLQKLDVAKCSNVSSRGILALTGISLGLQ 264

Query: 135 KLDLERCTRIHG----------------------GLVNLK--GLMKLESLNIKWCNCITD 170
           +L+L  C +I                        G VNL   G  +L+ L++  C  +TD
Sbjct: 265 ELNLSYCKKISDVLFASFQKLKTLQVVKLNGCAIGRVNLSLIGCKELKELSLSKCQGVTD 324

Query: 171 SDMK-PLSGLTNLKSLQISCSK-VTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           + +   ++  T L+ L ++C + +TD  + A     + L  L +E CP   +  + L+ +
Sbjct: 325 ASVVGVVTACTGLQKLDLTCCRDITDVALEAIAANCKGLLSLRMENCPSVTS--EGLTLI 382

Query: 228 GSLFY----LNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKG-LTNLESL 281
           G  F     L+L    L+D+G +  S+   +++L LG+  +IT+  L  +     NL   
Sbjct: 383 GRNFAHLEELDLTDSNLNDNGLKSISRCTEMRLLKLGYCMDITNAGLASISSTCKNLREF 442

Query: 282 N-LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDG 339
           +   S GI D+G+  +   C+                        L+ +NLS+   I+D 
Sbjct: 443 DCYRSVGISDDGVAAIARGCD-----------------------RLKVVNLSYCASITDA 479

Query: 340 SLRKLAGLSSLKSLNLDA-RQITDTGLAAL-TSLTGLTHLDLFGAR-ITDSGAAYL-RNF 395
           SL  LA L  L  L L A  QIT  G++ +  S   L  LD+   R + D G   L R  
Sbjct: 480 SLHSLALLRDLVQLELRACSQITSVGISYIGASCKHLRELDIKRCRFVGDPGVLALSRGC 539

Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
           +NLR + +    LTD G+  + ++S +  + L    N+T
Sbjct: 540 RNLRQINLSYTALTDLGMTAVANMSCIQDMKLVHMKNVT 578



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 127/465 (27%), Positives = 216/465 (46%), Gaps = 68/465 (14%)

Query: 44  VNDKWMDVIAS-QGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
           V D+ +  +A    S LLS+ L  +     +G+  L +CS+LQ +D   C QI D  +  
Sbjct: 70  VTDQCLATVAKFTNSRLLSIKLIRTKGFGIAGVKSLVECSSLQDVDVTHCTQIGDAEVIV 129

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
           L  L +L  L       +T  G+ A           L RCT             +L  L 
Sbjct: 130 LSKLKHLQKLKLNSCRDVTDVGLSA-----------LRRCT-------------ELRILG 165

Query: 162 IKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAA 219
           +K+C+ I DS ++ ++ G   L+++ +S ++V+D G++ L  L+ L  L++  C  VT  
Sbjct: 166 LKYCSGIGDSGIQNVATGCPQLRNIDLSFTEVSDKGVSSLALLKNLECLSIISCINVTDK 225

Query: 220 CLDSL-SALGSLFYLNLNRCQ-LSDDGCEKFSKIG-SLKVLNLGF-NEITDECLVHLKGL 275
            L  L S   SL  L++ +C  +S  G    + I   L+ LNL +  +I+D      + L
Sbjct: 226 GLSCLRSGCMSLQKLDVAKCSNVSSRGILALTGISLGLQELNLSYCKKISDVLFASFQKL 285

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ--VGSSGLRHLSGLTNLESINLS- 332
             L+ + L+ C IG   L +L G   LK L LS  Q    +S +  ++  T L+ ++L+ 
Sbjct: 286 KTLQVVKLNGCAIGRVNL-SLIGCKELKELSLSKCQGVTDASVVGVVTACTGLQKLDLTC 344

Query: 333 FTGISDGSLRKLAG---------------------------LSSLKSLNLDARQITDTGL 365
              I+D +L  +A                             + L+ L+L    + D GL
Sbjct: 345 CRDITDVALEAIAANCKGLLSLRMENCPSVTSEGLTLIGRNFAHLEELDLTDSNLNDNGL 404

Query: 366 AALTSLTGLTHLDL-FGARITDSGAAYLRNF-KNLRSLEICGG-GLTDAGVKHI-KDLSS 421
            +++  T +  L L +   IT++G A + +  KNLR  +     G++D GV  I +    
Sbjct: 405 KSISRCTEMRLLKLGYCMDITNAGLASISSTCKNLREFDCYRSVGISDDGVAAIARGCDR 464

Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNV-SNSRITSAGLRHL 465
           L ++NLS   ++TD +L  ++ L  LV L + + S+ITS G+ ++
Sbjct: 465 LKVVNLSYCASITDASLHSLALLRDLVQLELRACSQITSVGISYI 509



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 154/327 (47%), Gaps = 45/327 (13%)

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
           ++E L++  C  +TD  +  ++  TN + L I   +    GIA +K              
Sbjct: 58  QVEHLDLSSCVEVTDQCLATVAKFTNSRLLSIKLIRTKGFGIAGVK-------------- 103

Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN---EITDECLVHL 272
                  SL    SL  +++  C    D  E         +  L  N   ++TD  L  L
Sbjct: 104 -------SLVECSSLQDVDVTHCTQIGDA-EVIVLSKLKHLQKLKLNSCRDVTDVGLSAL 155

Query: 273 KGLTNLESLNLDSC-GIGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
           +  T L  L L  C GIGD G+ N+ TG   L+ ++LS T+V   G+  L+ L NLE ++
Sbjct: 156 RRCTELRILGLKYCSGIGDSGIQNVATGCPQLRNIDLSFTEVSDKGVSSLALLKNLECLS 215

Query: 331 -LSFTGISDGSLRKL-AGLSSLKSLNL-DARQITDTGLAALTSLT-GLTHLDL-FGARIT 385
            +S   ++D  L  L +G  SL+ L++     ++  G+ ALT ++ GL  L+L +  +I+
Sbjct: 216 IISCINVTDKGLSCLRSGCMSLQKLDVAKCSNVSSRGILALTGISLGLQELNLSYCKKIS 275

Query: 386 DSGAAYLRNFKNLRSLEI--CGGG---LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE- 439
           D   A  +  K L+ +++  C  G   L+  G K +K+LS      LS+   +TD ++  
Sbjct: 276 DVLFASFQKLKTLQVVKLNGCAIGRVNLSLIGCKELKELS------LSKCQGVTDASVVG 329

Query: 440 LISGLTGLVSLNVSNSR-ITSAGLRHL 465
           +++  TGL  L+++  R IT   L  +
Sbjct: 330 VVTACTGLQKLDLTCCRDITDVALEAI 356


>gi|343414367|emb|CCD21012.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
          Length = 1699

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 147/432 (34%), Positives = 228/432 (52%), Gaps = 39/432 (9%)

Query: 33   LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFC 91
            L+ L L    G+ D       S+ SSL  +DLS  + +TD  +  L + S+L +LD + C
Sbjct: 820  LEKLYLSHCTGITDVPP---LSELSSLRMLDLSHCTGITD--VSPLSELSSLHTLDLSHC 874

Query: 92   IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
              I+D  +  L  LS+L +L       IT   +   + L +L  LDL  CT I   +  L
Sbjct: 875  TGITD--VSPLSELSSLRTLDLSHCTGIT--DVSPLSELSSLRTLDLSHCTGI-TDVSPL 929

Query: 152  KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLN 210
              L  L +L++  C  IT  D+ PLS L++L++L +S C+ +TD  ++ L  L  L  L+
Sbjct: 930  SELSSLRTLDLSHCTGIT--DVSPLSKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLD 985

Query: 211  LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECL 269
            L  C      +  LS L SL  L+L+ C    D     S++ SL+ L+L     ITD  +
Sbjct: 986  LSHC-TGITDVSPLSKLSSLRTLDLSHCTGITD-VSPLSELSSLRTLDLSHCTGITD--V 1041

Query: 270  VHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
              L  L++L +L+L  C GI D  +  L+ L +L+ L+LS    G + +  LS L++L +
Sbjct: 1042 SPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHC-TGITDVSPLSELSSLRT 1098

Query: 329  INLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-IT 385
            ++LS  TGI+D S   L+ LSSL++L+L     ITD  ++ L+ L+ L  LDL     IT
Sbjct: 1099 LDLSHCTGITDVS--PLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGIT 1154

Query: 386  DSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
            D   + L    +LR+L++    G+TD  V  +  LSSL  L LS    +TD  +  +S L
Sbjct: 1155 D--VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLCTLELSHCTGITD--VSPLSEL 1208

Query: 445  TGLVSLNVSNSR 456
            + L +L++S+ R
Sbjct: 1209 SSLRTLDLSHCR 1220



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 140/410 (34%), Positives = 223/410 (54%), Gaps = 38/410 (9%)

Query: 54   SQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
            S+ SSL ++DLS  + +TD  +  L + S+L++LD + C  I+D  +  L  LS+L +L 
Sbjct: 861  SELSSLHTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLD 916

Query: 113  FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITDS 171
                  IT   +   + L +L  LDL  CT    G+ ++  L KL SL  +   +C   +
Sbjct: 917  LSHCTGIT--DVSPLSELSSLRTLDLSHCT----GITDVSPLSKLSSLRTLDLSHCTGIT 970

Query: 172  DMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
            D+ PLS L++L++L +S C+ +TD  ++ L  L  L  L+L  C      +  LS L SL
Sbjct: 971  DVSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHC-TGITDVSPLSELSSL 1027

Query: 231  FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GI 288
              L+L+ C    D     S++ SL+ L+L     ITD  +  L  L++L +L+L  C GI
Sbjct: 1028 RTLDLSHCTGITD-VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTGI 1084

Query: 289  GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGL 347
             D  +  L+ L +L+ L+LS    G + +  LS L++L +++LS  TGI+D S   L+ L
Sbjct: 1085 TD--VSPLSELSSLRTLDLSHC-TGITDVSPLSELSSLRTLDLSHCTGITDVS--PLSEL 1139

Query: 348  SSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG 405
            SSL++L+L     ITD  ++ L+ L+ L  LDL     ITD   + L    +L +LE+  
Sbjct: 1140 SSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLCTLELSH 1195

Query: 406  -GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
              G+TD  V  + +LSSL  L+LS    +TD  +  +S L+  V L++S+
Sbjct: 1196 CTGITD--VSPLSELSSLRTLDLSHCRGITD--VSPLSELSNFVQLDLSH 1241



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 131/386 (33%), Positives = 206/386 (53%), Gaps = 35/386 (9%)

Query: 77   LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA-QGMKAFAGLINLVK 135
            L + S+L++LD + C      G+ ++  LSNL+SL     +  T    +   + L +L  
Sbjct: 1297 LSELSSLRTLDLSHC-----RGIANVSPLSNLSSLRMLNLSHCTGITDVSPLSVLSSLRT 1351

Query: 136  LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD 194
            LDL  CT I   +  L  L  L +L++  C  ITD  + PLS L++L++L +S C+ +TD
Sbjct: 1352 LDLSHCTGI-TDVSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTGITD 1408

Query: 195  SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
              ++ L  L  L  L L  C      +  LS L SL  L+L+ C    D     S++ SL
Sbjct: 1409 --VSPLSVLSSLRTLGLSHC-TGITDVSPLSELSSLRTLDLSHCTGITD-VSPLSELSSL 1464

Query: 255  KVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQV 312
            + L+L     ITD  +  L   ++L +L L  C GI D  +  L+ L NL+ L+LS    
Sbjct: 1465 RTLDLSHCTGITD--VSPLSVFSSLRTLGLSHCTGITD--VSPLSELSNLRTLDLSHC-T 1519

Query: 313  GSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTS 370
            G + +  LS L++L +++LS  TGI+D S   L+ LSSL++L+L     ITD  ++ L+ 
Sbjct: 1520 GITDVSPLSELSSLRTLDLSHCTGITDVS--PLSELSSLRTLDLSHCTGITD--VSPLSK 1575

Query: 371  LTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLS 428
            L+ L  LDL     ITD   + L    +LR+L++    G+TD  V  + +LSSL  L+LS
Sbjct: 1576 LSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLS 1631

Query: 429  QNCNLTDKTLELISGLTGLVSLNVSN 454
                +TD  +  +S L+ L +L++S+
Sbjct: 1632 HCTGITD--VSPLSKLSSLRTLDLSH 1655



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 146/454 (32%), Positives = 232/454 (51%), Gaps = 62/454 (13%)

Query: 32   ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
            +L+ L L    G+ D       S+ SSL ++DLS  + +TD  +  L   S+L +L+ + 
Sbjct: 1141 SLRTLDLSHCTGITDVSP---LSELSSLRTLDLSHCTGITD--VSPLSKLSSLCTLELSH 1195

Query: 91   CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
            C  I+D  +  L  LS+L +L       IT   +   + L N V+LDL  CT I   +  
Sbjct: 1196 CTGITD--VSPLSELSSLRTLDLSHCRGIT--DVSPLSELSNFVQLDLSHCTGI-TDVSP 1250

Query: 151  LKGLMKLESLNIKWCNCITD---------------------SDMKPLSGLTNLKSLQIS- 188
            L  L  L +L++ +C  IT+                     +D+ PLS L++L++L +S 
Sbjct: 1251 LSVLSSLRTLDLSYCTGITNVSPLSNLSSLRSLDLSHCTGITDVSPLSELSSLRTLDLSH 1310

Query: 189  CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
            C  +  + ++ L  L  L +LNL  C      +  LS L SL  L+L+ C    D     
Sbjct: 1311 CRGI--ANVSPLSNLSSLRMLNLSHC-TGITDVSPLSVLSSLRTLDLSHCTGITD-VSPL 1366

Query: 249  SKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLE 306
            S++ SL+ L+L     ITD  +  L  L++L +L+L  C GI D  +  L+ L +L+ L 
Sbjct: 1367 SELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTGITD--VSPLSVLSSLRTLG 1422

Query: 307  LSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITD-T 363
            LS    G + +  LS L++L +++LS  TGI+D S   L+ LSSL++L+L     ITD +
Sbjct: 1423 LSHC-TGITDVSPLSELSSLRTLDLSHCTGITDVS--PLSELSSLRTLDLSHCTGITDVS 1479

Query: 364  GLAALTSLT--GLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLS 420
             L+  +SL   GL+H       ITD   + L    NLR+L++    G+TD  V  + +LS
Sbjct: 1480 PLSVFSSLRTLGLSHC----TGITD--VSPLSELSNLRTLDLSHCTGITD--VSPLSELS 1531

Query: 421  SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
            SL  L+LS    +TD  +  +S L+ L +L++S+
Sbjct: 1532 SLRTLDLSHCTGITD--VSPLSELSSLRTLDLSH 1563



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 150/475 (31%), Positives = 234/475 (49%), Gaps = 81/475 (17%)

Query: 32   ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
            +L+ L L    G+ D       S+ SSL ++DLS  + +TD  +  L   S+L++LD + 
Sbjct: 911  SLRTLDLSHCTGITDVSP---LSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSH 965

Query: 91   CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
            C  I+D  +  L  LS+L +L       IT   +   + L +L  LDL  CT I   +  
Sbjct: 966  CTGITD--VSPLSELSSLRTLDLSHCTGIT--DVSPLSKLSSLRTLDLSHCTGI-TDVSP 1020

Query: 151  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLL 209
            L  L  L +L++  C  ITD  + PLS L++L++L +S C+ +TD  ++ L  L  L  L
Sbjct: 1021 LSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTL 1076

Query: 210  NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDEC 268
            +L  C      +  LS L SL  L+L+ C    D     S++ SL+ L+L     ITD  
Sbjct: 1077 DLSHC-TGITDVSPLSELSSLRTLDLSHCTGITD-VSPLSELSSLRTLDLSHCTGITD-- 1132

Query: 269  LVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
            +  L  L++L +L+L  C GI D  +  L+ L +L+ L+LS    G + +  LS L++L 
Sbjct: 1133 VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHC-TGITDVSPLSKLSSLC 1189

Query: 328  SINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-I 384
            ++ LS  TGI+D S   L+ LSSL++L+L   R ITD  ++ L+ L+    LDL     I
Sbjct: 1190 TLELSHCTGITDVS--PLSELSSLRTLDLSHCRGITD--VSPLSELSNFVQLDLSHCTGI 1245

Query: 385  TDSGAAYLRNFKNLRSLEI--CGG----------------------GLTD---------- 410
            TD   + L    +LR+L++  C G                      G+TD          
Sbjct: 1246 TD--VSPLSVLSSLRTLDLSYCTGITNVSPLSNLSSLRSLDLSHCTGITDVSPLSELSSL 1303

Query: 411  -----------AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
                       A V  + +LSSL +LNLS    +TD  +  +S L+ L +L++S+
Sbjct: 1304 RTLDLSHCRGIANVSPLSNLSSLRMLNLSHCTGITD--VSPLSVLSSLRTLDLSH 1356



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 143/456 (31%), Positives = 228/456 (50%), Gaps = 66/456 (14%)

Query: 32   ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
            +L+ L L    G+ D       S+ SSL ++DLS  + +TD  +  L + S+L++LD + 
Sbjct: 980  SLRTLDLSHCTGITDVSP---LSKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSH 1034

Query: 91   CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
            C  I+D  +  L  LS+L +L       IT   +   + L +L  LDL  CT I   +  
Sbjct: 1035 CTGITD--VSPLSELSSLRTLDLSHCTGIT--DVSPLSKLSSLRTLDLSHCTGI-TDVSP 1089

Query: 151  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLL 209
            L  L  L +L++  C  ITD  + PLS L++L++L +S C+ +TD  ++ L  L  L  L
Sbjct: 1090 LSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTL 1145

Query: 210  NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDEC 268
            +L  C      +  LS L SL  L+L+ C    D     SK+ SL  L L     ITD  
Sbjct: 1146 DLSHC-TGITDVSPLSELSSLRTLDLSHCTGITD-VSPLSKLSSLCTLELSHCTGITD-- 1201

Query: 269  LVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
            +  L  L++L +L+L  C GI D  +  L+ L N   L+LS    G + +  LS L++L 
Sbjct: 1202 VSPLSELSSLRTLDLSHCRGITD--VSPLSELSNFVQLDLSHC-TGITDVSPLSVLSSLR 1258

Query: 328  SINLSF------------------------TGISDGSLRKLAGLSSLKSLNLDARQITDT 363
            +++LS+                        TGI+D S   L+ LSSL++L+L   +    
Sbjct: 1259 TLDLSYCTGITNVSPLSNLSSLRSLDLSHCTGITDVS--PLSELSSLRTLDLSHCR---- 1312

Query: 364  GLAALTSLTGLTHLDLFGAR----ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKD 418
            G+A ++ L+ L+ L +        ITD   + L    +LR+L++    G+TD  V  + +
Sbjct: 1313 GIANVSPLSNLSSLRMLNLSHCTGITD--VSPLSVLSSLRTLDLSHCTGITD--VSPLSE 1368

Query: 419  LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
            LSSL  L+LS    +TD  +  +S L+ L +L++S+
Sbjct: 1369 LSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSH 1402



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 130/400 (32%), Positives = 209/400 (52%), Gaps = 48/400 (12%)

Query: 81   SNLQSLDFNFCIQISD------------GGLEHLRGLSNLTSLS----FRRNNAITAQGM 124
            S+L++LD ++C  I++              L H  G+++++ LS     R  +    +G+
Sbjct: 1255 SSLRTLDLSYCTGITNVSPLSNLSSLRSLDLSHCTGITDVSPLSELSSLRTLDLSHCRGI 1314

Query: 125  KAFAGLINLVKL---DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
               + L NL  L   +L  CT I   +  L  L  L +L++  C  ITD  + PLS L++
Sbjct: 1315 ANVSPLSNLSSLRMLNLSHCTGI-TDVSPLSVLSSLRTLDLSHCTGITD--VSPLSELSS 1371

Query: 182  LKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
            L++L +S C+ +TD  ++ L  L  L  L+L  C      +  LS L SL  L L+ C  
Sbjct: 1372 LRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHC-TGITDVSPLSVLSSLRTLGLSHCTG 1428

Query: 241  SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
              D     S++ SL+ L+L     ITD  +  L  L++L +L+L  C GI D  +  L+ 
Sbjct: 1429 ITD-VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSV 1483

Query: 299  LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD- 356
              +L+ L LS    G + +  LS L+NL +++LS  TGI+D S   L+ LSSL++L+L  
Sbjct: 1484 FSSLRTLGLSHC-TGITDVSPLSELSNLRTLDLSHCTGITDVS--PLSELSSLRTLDLSH 1540

Query: 357  ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVK 414
               ITD  ++ L+ L+ L  LDL     ITD   + L    +LR+L++    G+TD  V 
Sbjct: 1541 CTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTGITD--VS 1594

Query: 415  HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
             + +LSSL  L+LS    +TD  +  +S L+ L +L++S+
Sbjct: 1595 PLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSH 1632



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 135/432 (31%), Positives = 221/432 (51%), Gaps = 41/432 (9%)

Query: 32   ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
            +L+ L L    G+ D       S+ SSL ++DLS  + +TD  +  L + S+L++LD + 
Sbjct: 1072 SLRTLDLSHCTGITDVSP---LSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSH 1126

Query: 91   CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
            C  I+D  +  L  LS+L +L       IT   +   + L +L  LDL  CT    G+ +
Sbjct: 1127 CTGITD--VSPLSELSSLRTLDLSHCTGIT--DVSPLSELSSLRTLDLSHCT----GITD 1178

Query: 151  LKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTL 208
            +  L KL SL  ++  +C   +D+ PLS L++L++L +S C  +TD  ++ L  L     
Sbjct: 1179 VSPLSKLSSLCTLELSHCTGITDVSPLSELSSLRTLDLSHCRGITD--VSPLSELSNFVQ 1236

Query: 209  LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
            L+L  C      +  LS L SL  L+L+ C    +     +      +       ITD  
Sbjct: 1237 LDLSHC-TGITDVSPLSVLSSLRTLDLSYCTGITNVSPLSNLSSLRSLDLSHCTGITD-- 1293

Query: 269  LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ--VGSSGLRHLSGLTNL 326
            +  L  L++L +L+L  C     G+ N++ L NL  L + +     G + +  LS L++L
Sbjct: 1294 VSPLSELSSLRTLDLSHC----RGIANVSPLSNLSSLRMLNLSHCTGITDVSPLSVLSSL 1349

Query: 327  ESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR- 383
             +++LS  TGI+D S   L+ LSSL++L+L     ITD  ++ L+ L+ L  LDL     
Sbjct: 1350 RTLDLSHCTGITDVS--PLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTG 1405

Query: 384  ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
            ITD   + L    +LR+L +    G+TD  V  + +LSSL  L+LS    +TD  +  +S
Sbjct: 1406 ITD--VSPLSVLSSLRTLGLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLS 1459

Query: 443  GLTGLVSLNVSN 454
             L+ L +L++S+
Sbjct: 1460 ELSSLRTLDLSH 1471



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 128/379 (33%), Positives = 202/379 (53%), Gaps = 34/379 (8%)

Query: 57   SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
            SSL ++DLS  + +TD  +  L + S+L++LD + C  I+D  +  L  LS+L +L    
Sbjct: 1347 SSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSH 1402

Query: 116  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
               IT   +   + L +L  L L  CT I   +  L  L  L +L++  C  IT  D+ P
Sbjct: 1403 CTGIT--DVSPLSVLSSLRTLGLSHCTGI-TDVSPLSELSSLRTLDLSHCTGIT--DVSP 1457

Query: 176  LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
            LS L++L++L +S C+ +TD  ++ L     L  L L  C      +  LS L +L  L+
Sbjct: 1458 LSELSSLRTLDLSHCTGITD--VSPLSVFSSLRTLGLSHC-TGITDVSPLSELSNLRTLD 1514

Query: 235  LNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEG 292
            L+ C    D     S++ SL+ L+L     ITD  +  L  L++L +L+L  C GI D  
Sbjct: 1515 LSHCTGITD-VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD-- 1569

Query: 293  LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLK 351
            +  L+ L +L+ L+LS    G + +  LS L++L +++LS  TGI+D S   L+ LSSL+
Sbjct: 1570 VSPLSKLSSLRTLDLSHC-TGITDVSPLSELSSLRTLDLSHCTGITDVS--PLSELSSLR 1626

Query: 352  SLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGL 408
            +L+L     ITD  ++ L+ L+ L  LDL     ITD   + L    +LR+L++    G+
Sbjct: 1627 TLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLLHCTGI 1682

Query: 409  TDAGVKHIKDLSSLTLLNL 427
            TD  V  + +LSSL  L+ 
Sbjct: 1683 TD--VSPLSELSSLGTLDF 1699



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 123/375 (32%), Positives = 190/375 (50%), Gaps = 50/375 (13%)

Query: 32   ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
            +L+ L L    G+ D       S+ SSL ++DLS  + +TD  +  L   S+L++LD + 
Sbjct: 1348 SLRTLDLSHCTGITDVSP---LSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSH 1402

Query: 91   CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
            C  I+D  +  L  LS+L +L       IT   +   + L +L  LDL  CT I   +  
Sbjct: 1403 CTGITD--VSPLSVLSSLRTLGLSHCTGIT--DVSPLSELSSLRTLDLSHCTGI-TDVSP 1457

Query: 151  LKGLMKLESLNIKWCNCITD---------------------SDMKPLSGLTNLKSLQIS- 188
            L  L  L +L++  C  ITD                     +D+ PLS L+NL++L +S 
Sbjct: 1458 LSELSSLRTLDLSHCTGITDVSPLSVFSSLRTLGLSHCTGITDVSPLSELSNLRTLDLSH 1517

Query: 189  CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
            C+ +TD  ++ L  L  L  L+L  C      +  LS L SL  L+L+ C    D     
Sbjct: 1518 CTGITD--VSPLSELSSLRTLDLSHC-TGITDVSPLSELSSLRTLDLSHCTGITD-VSPL 1573

Query: 249  SKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLE 306
            SK+ SL+ L+L     ITD  +  L  L++L +L+L  C GI D  +  L+ L +L+ L+
Sbjct: 1574 SKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLD 1629

Query: 307  LSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLN-LDARQITDTG 364
            LS    G + +  LS L++L +++LS  TGI+D S   L+ LSSL++L+ L    ITD  
Sbjct: 1630 LSHC-TGITDVSPLSKLSSLRTLDLSHCTGITDVS--PLSELSSLRTLDLLHCTGITD-- 1684

Query: 365  LAALTSLTGLTHLDL 379
            ++ L+ L+ L  LD 
Sbjct: 1685 VSPLSELSSLGTLDF 1699



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 132/431 (30%), Positives = 218/431 (50%), Gaps = 41/431 (9%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFC 91
           LQ L L    G+ D       S  SS   +DLS  + +TD  +  L   S+L++LD + C
Sbjct: 475 LQKLYLSHCTGITDVPP---LSALSSFEKLDLSHCTGITD--VSPLSVLSSLRTLDISHC 529

Query: 92  IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
             I+D  +  L  ++ L  L       IT   +   + L +  KLDL  CT    G+ ++
Sbjct: 530 TGITD--VSPLSKMNGLQKLYLSHCTGIT--DVPPLSALSSFEKLDLSHCT----GITDV 581

Query: 152 KGLMKLESLN-IKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLL 209
             L KL SL+ +   +C   +++ PL   ++L+ L IS C+ +T+  ++ L  L  L  L
Sbjct: 582 SPLSKLSSLHTLDLSHCTGITNVSPLLKFSSLRMLDISHCTGITN--VSPLSELSSLRTL 639

Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDEC 268
           +L  C      +  LS   SL  L+L+ C          SK  SL++L++     IT+  
Sbjct: 640 DLSHC-TGITDVSPLSKFSSLHTLDLSHCT-GITNVSPLSKFSSLRMLDISHCTGITN-- 695

Query: 269 LVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
           +  L  L++L +L+L  C GI D  +  L+ L +L+ L+ S    G + +  LS L++L 
Sbjct: 696 VSPLSKLSSLHTLDLSHCTGITD--VSPLSKLSSLRTLDFSHC-TGITNVSPLSELSSLR 752

Query: 328 SINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGAR-I 384
           ++++S  TGI+D S   L+ LSSL++L+L     TD T ++ L+ ++ L  LDL     +
Sbjct: 753 TLDISHCTGITDVS--PLSELSSLRTLDL--SHCTDITNVSPLSKISTLQKLDLSHCTGV 808

Query: 385 TDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
           TD   + L     L  L +    G+TD  V  + +LSSL +L+LS    +TD  +  +S 
Sbjct: 809 TD--VSPLSKMIGLEKLYLSHCTGITD--VPPLSELSSLRMLDLSHCTGITD--VSPLSE 862

Query: 444 LTGLVSLNVSN 454
           L+ L +L++S+
Sbjct: 863 LSSLHTLDLSH 873



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 125/394 (31%), Positives = 200/394 (50%), Gaps = 33/394 (8%)

Query: 68  DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           D+ D  L  L     L++LD + C  I+D  L  L  LS L +L       IT   +   
Sbjct: 345 DINDVTLRDLDGNECLRTLDLSHCTGITDVSL--LSKLSGLHTLGLSHCTGIT--DVSPL 400

Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
           + L  L  L L  CT I   +  L  L  L +L +  C  IT  D+ PLS  ++L++L I
Sbjct: 401 SNLSGLRMLGLSHCTGI-TDVSPLSELSSLRTLGLSHCTGIT--DVSPLSVFSSLRTLGI 457

Query: 188 S-CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
           S C+ +TD S ++ + GLQKL L +  G  +T   +  LSAL S   L+L+ C    D  
Sbjct: 458 SHCTGITDVSPLSKMNGLQKLYLSHCTG--ITD--VPPLSALSSFEKLDLSHCTGITD-V 512

Query: 246 EKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK 303
              S + SL+ L++     ITD  +  L  +  L+ L L  C GI D  +  L+ L + +
Sbjct: 513 SPLSVLSSLRTLDISHCTGITD--VSPLSKMNGLQKLYLSHCTGITD--VPPLSALSSFE 568

Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITD 362
            L+LS    G + +  LS L++L +++LS  TGI++ S   L   SSL+ L++ +     
Sbjct: 569 KLDLSHC-TGITDVSPLSKLSSLHTLDLSHCTGITNVS--PLLKFSSLRMLDI-SHCTGI 624

Query: 363 TGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLS 420
           T ++ L+ L+ L  LDL     ITD   + L  F +L +L++    G+T+  V  +   S
Sbjct: 625 TNVSPLSELSSLRTLDLSHCTGITD--VSPLSKFSSLHTLDLSHCTGITN--VSPLSKFS 680

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
           SL +L++S    +T+  +  +S L+ L +L++S+
Sbjct: 681 SLRMLDISHCTGITN--VSPLSKLSSLHTLDLSH 712


>gi|344170515|emb|CCA82933.1| leucine-rich-repeat type III effector protein (GALA5) [blood
           disease bacterium R229]
          Length = 533

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 161/360 (44%), Gaps = 31/360 (8%)

Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC----ITDSDMKPLSGLTNLKSLQIS 188
           L +LDL RC     G +   G+  L  L +   N     I     + L+    L SL +S
Sbjct: 141 LTELDLSRCR----GPITAAGIAHLSHLPLVRLNVRDQRIGVEGARLLANHPTLTSLDVS 196

Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
             ++   G   L G  +LT L++    + A    +L+A  +L  L+++   + D+G    
Sbjct: 197 NGRIGPEGARALAGNTRLTTLSVSHNRIGAEGAKALAASETLTSLDISENGIGDEGACAL 256

Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
           +    L  LN+  N I  E    L     L SL++    IGDEG+  L     L  L + 
Sbjct: 257 ATNTKLTALNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVE 316

Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
            T+VG+ G+  L+    L S+ +    I D   R LA  +SL +L++++  I+  G  AL
Sbjct: 317 RTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESNGISPAGAQAL 376

Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
            + T LT L+L    I D+GA        L SL +   GL+DAG   +    +LT L+  
Sbjct: 377 AANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNGLSDAGATTLAASKTLTTLDAG 436

Query: 429 QN-----------CNLTDKTLEL------------ISGLTGLVSLNVSNSRITSAGLRHL 465
            N            N T  TL++            ++  TGL SL++ N+R+T AG+R L
Sbjct: 437 DNTIRDAGARALAANRTLTTLDVRSNEIENAGARALAANTGLASLDLRNNRVTEAGVRAL 496



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 114/388 (29%), Positives = 176/388 (45%), Gaps = 14/388 (3%)

Query: 57  SSLLSVDLSG--SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN---LTSL 111
           +SL  +DLS     +T +G+ HL   S+L  +  N   Q    G+E  R L+N   LTSL
Sbjct: 139 ASLTELDLSRCRGPITAAGIAHL---SHLPLVRLNVRDQRI--GVEGARLLANHPTLTSL 193

Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
               N  I  +G +A AG   L  L +        G   L     L SL+I   N I D 
Sbjct: 194 DVS-NGRIGPEGARALAGNTRLTTLSVSHNRIGAEGAKALAASETLTSLDIS-ENGIGDE 251

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
               L+  T L +L ++ +++   G   L   + LT L++ G  +    + +L+A   L 
Sbjct: 252 GACALATNTKLTALNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLT 311

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
            LN+ R ++  DG    +   +L  L +  N I D     L   T+L +L+++S GI   
Sbjct: 312 TLNVERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESNGISPA 371

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
           G   L     L  L L    +G +G +  S  T L S+++   G+SD     LA   +L 
Sbjct: 372 GAQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNGLSDAGATTLAASKTLT 431

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
           +L+     I D G  AL +   LT LD+    I ++GA  L     L SL++    +T+A
Sbjct: 432 TLDAGDNTIRDAGARALAANRTLTTLDVRSNEIENAGARALAANTGLASLDLRNNRVTEA 491

Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
           GV+ +  L++ TL +L  + N   K  E
Sbjct: 492 GVRAL--LANRTLSSLGVSFNYCSKPTE 517



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 166/355 (46%), Gaps = 13/355 (3%)

Query: 114 RRNNAITAQGMKAFA-GLINLVKLDLER-CTRIHGGLVNLK---GLMKLESLNIKWCNCI 168
           RR+  +  Q ++A +  L   V+ D+ +   R   GL  +K       LE L +      
Sbjct: 72  RRSKPLAVQRLRAVSKPLKAAVEADMRQLVIRDRAGLAGVKRAGNYPALEKLTL--IGPF 129

Query: 169 TDSDMKPLSGLTNLKSLQIS-C-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
           TD+D++ L    +L  L +S C   +T +GIA+L  L  L  LN+    +       L+ 
Sbjct: 130 TDNDLRGLPA--SLTELDLSRCRGPITAAGIAHLSHL-PLVRLNVRDQRIGVEGARLLAN 186

Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
             +L  L+++  ++  +G    +    L  L++  N I  E    L     L SL++   
Sbjct: 187 HPTLTSLDVSNGRIGPEGARALAGNTRLTTLSVSHNRIGAEGAKALAASETLTSLDISEN 246

Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
           GIGDEG   L     L  L ++  ++G  G + L+    L S+++    I D  +R LA 
Sbjct: 247 GIGDEGACALATNTKLTALNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAA 306

Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
            + L +LN++  ++   G+ AL +   LT L +    I D+GA  L    +L +L I   
Sbjct: 307 NARLTTLNVERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESN 366

Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
           G++ AG + +   ++LT LNL  N  + D   +  S  T L+SL+V  + ++ AG
Sbjct: 367 GISPAGAQALAANTTLTTLNLGYN-GIGDAGAQAWSANTTLISLSVRRNGLSDAG 420



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 103/230 (44%), Gaps = 3/230 (1%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           + G +L S+D+ G+D+ D G+  L   + L +L+     ++   G+  L     LTSL  
Sbjct: 281 AAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVERT-RVGADGVGALAASKTLTSLRI 339

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
             NN I   G +A A   +L  L +E       G   L     L +LN+ + N I D+  
Sbjct: 340 DSNN-IGDAGARALATNTSLTTLHIESNGISPAGAQALAANTTLTTLNLGY-NGIGDAGA 397

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           +  S  T L SL +  + ++D+G   L   + LT L+     +  A   +L+A  +L  L
Sbjct: 398 QAWSANTTLISLSVRRNGLSDAGATTLAASKTLTTLDAGDNTIRDAGARALAANRTLTTL 457

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           ++   ++ + G    +    L  L+L  N +T+  +  L     L SL +
Sbjct: 458 DVRSNEIENAGARALAANTGLASLDLRNNRVTEAGVRALLANRTLSSLGV 507


>gi|168701675|ref|ZP_02733952.1| hypothetical protein GobsU_19277 [Gemmata obscuriglobus UQM 2246]
          Length = 407

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 111/191 (58%), Gaps = 8/191 (4%)

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGI--------AYLKGLQKLTLLNLEGCPVTAA 219
           +TD+ +K L+ L  L +L +S ++VTD+G+            GL+ LT L+L    VT A
Sbjct: 46  VTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALKALTALGLKGLTTLDLTFTRVTDA 105

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            + +L+AL +L  L+L+   ++D+G ++ + +G+L  L LG   +TD  +  L  L  L 
Sbjct: 106 GVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLGGTSVTDAGVKELAALKGLT 165

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
           +L+L S G+ D G   L+GL  L  L +S T V  +G++ L+ L NL  + L+ TG++D 
Sbjct: 166 ALDLGSMGVTDAGAKELSGLTGLTALGMSFTGVTDAGVKELAALKNLTHLELAATGVTDA 225

Query: 340 SLRKLAGLSSL 350
            +++LA L SL
Sbjct: 226 GVKELAALKSL 236



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 110/203 (54%), Gaps = 14/203 (6%)

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-----------VHLKGLTNLESL 281
           ++L+  +++D G ++ + +  L  L+L + E+TD  +           + LKGLT   +L
Sbjct: 39  VSLSFTRVTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALKALTALGLKGLT---TL 95

Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
           +L    + D G+  L  L  L  L+LS T V   GL+ L+ L  L ++ L  T ++D  +
Sbjct: 96  DLTFTRVTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLGGTSVTDAGV 155

Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
           ++LA L  L +L+L +  +TD G   L+ LTGLT L +    +TD+G   L   KNL  L
Sbjct: 156 KELAALKGLTALDLGSMGVTDAGAKELSGLTGLTALGMSFTGVTDAGVKELAALKNLTHL 215

Query: 402 EICGGGLTDAGVKHIKDLSSLTL 424
           E+   G+TDAGVK +  L SL L
Sbjct: 216 ELAATGVTDAGVKELAALKSLVL 238



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 112/214 (52%), Gaps = 14/214 (6%)

Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
           T  D +P++       + +S ++VTD+G+  L  L+ LT L+L    VT A + +L+AL 
Sbjct: 29  TTPDGRPVT------KVSLSFTRVTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALK 82

Query: 229 --------SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
                    L  L+L   +++D G +  + + +L  L+L    +TDE L  L  L  L +
Sbjct: 83  ALTALGLKGLTTLDLTFTRVTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGALNT 142

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           L L    + D G+  L  L  L  L+L    V  +G + LSGLT L ++ +SFTG++D  
Sbjct: 143 LGLGGTSVTDAGVKELAALKGLTALDLGSMGVTDAGAKELSGLTGLTALGMSFTGVTDAG 202

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
           +++LA L +L  L L A  +TD G+  L +L  L
Sbjct: 203 VKELAALKNLTHLELAATGVTDAGVKELAALKSL 236



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 102/186 (54%), Gaps = 9/186 (4%)

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT--------NLESINLSFTGISDG 339
           + D GL  L  L  L  L+LS T+V  +G++ L+ L          L +++L+FT ++D 
Sbjct: 46  VTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALKALTALGLKGLTTLDLTFTRVTDA 105

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            ++ LA L +L +L+L    +TD GL  L +L  L  L L G  +TD+G   L   K L 
Sbjct: 106 GVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLGGTSVTDAGVKELAALKGLT 165

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
           +L++   G+TDAG K +  L+ LT L +S    +TD  ++ ++ L  L  L ++ + +T 
Sbjct: 166 ALDLGSMGVTDAGAKELSGLTGLTALGMSFT-GVTDAGVKELAALKNLTHLELAATGVTD 224

Query: 460 AGLRHL 465
           AG++ L
Sbjct: 225 AGVKEL 230



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 97/169 (57%), Gaps = 9/169 (5%)

Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL--------SSLKSLNLD 356
           + LS T+V  +GL+ L+ L  L +++LS+T ++D  ++ LA L          L +L+L 
Sbjct: 39  VSLSFTRVTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALKALTALGLKGLTTLDLT 98

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
             ++TD G+ AL +L  LT LDL    +TD G   L     L +L + G  +TDAGVK +
Sbjct: 99  FTRVTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLGGTSVTDAGVKEL 158

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
             L  LT L+L  +  +TD   + +SGLTGL +L +S + +T AG++ L
Sbjct: 159 AALKGLTALDLG-SMGVTDAGAKELSGLTGLTALGMSFTGVTDAGVKEL 206



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 17/212 (8%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE-----------HL 102
             G  +  V LS + VTD+GL  L     L +LD ++  +++D G++            L
Sbjct: 31  PDGRPVTKVSLSFTRVTDTGLKELAALKGLTTLDLSY-TEVTDAGVKALAALKALTALGL 89

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
           +GL+ L  L+F R   +T  G+KA A L  L  LDL        GL  L  L  L +L +
Sbjct: 90  KGLTTL-DLTFTR---VTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGL 145

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
                +TD+ +K L+ L  L +L +    VTD+G   L GL  LT L +    VT A + 
Sbjct: 146 G-GTSVTDAGVKELAALKGLTALDLGSMGVTDAGAKELSGLTGLTALGMSFTGVTDAGVK 204

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
            L+AL +L +L L    ++D G ++ + + SL
Sbjct: 205 ELAALKNLTHLELAATGVTDAGVKELAALKSL 236



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 100/196 (51%), Gaps = 16/196 (8%)

Query: 59  LLSVDLSGSDVTDSGL--------IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
           L ++DLS ++VTD+G+        +       L +LD  F  +++D G++ L  L  LT+
Sbjct: 60  LTTLDLSYTEVTDAGVKALAALKALTALGLKGLTTLDLTF-TRVTDAGVKALAALKALTT 118

Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
           L    +  +T +G+K  A L  L  L L   +    G+  L  L  L +L++     +TD
Sbjct: 119 LDLS-HTLVTDEGLKELAALGALNTLGLGGTSVTDAGVKELAALKGLTALDLG-SMGVTD 176

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           +  K LSGLT L +L +S + VTD+G+  L  L+ LT L L    VT A +  L+AL SL
Sbjct: 177 AGAKELSGLTGLTALGMSFTGVTDAGVKELAALKNLTHLELAATGVTDAGVKELAALKSL 236

Query: 231 FYLNLNRCQLSDDGCE 246
                  CQ ++ GC 
Sbjct: 237 VL-----CQANELGCH 247


>gi|410684076|ref|YP_006060083.1| leucine-rich-repeat type III effector protein (GALA1-like)
           [Ralstonia solanacearum CMR15]
 gi|299068565|emb|CBJ39793.1| leucine-rich-repeat type III effector protein (GALA1-like)
           [Ralstonia solanacearum CMR15]
          Length = 555

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 124/415 (29%), Positives = 192/415 (46%), Gaps = 21/415 (5%)

Query: 25  LEAFRD----CALQDLCL-GQYPGVNDKWMDVIASQGSSLLSVDLS--GSDVTDSGLIHL 77
           L+A RD     AL+ L L G++   +      +A+  +SL ++DLS  G  +T +G+ HL
Sbjct: 123 LQALRDTEGYAALESLTLEGRFTDED------LATLPASLKALDLSRCGRQITAAGIAHL 176

Query: 78  KDCSNLQSLDF--NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
            +   L  L+   N+   I D G   L     LT+L+   +N I   G +A A    L  
Sbjct: 177 SELP-LAELNVRNNW---IGDEGARLLAAHPTLTTLNVA-SNGIGDAGAQALAANTRLES 231

Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
           LD+        G+  L     L++LNI   N I D+    L+  T L  L  SC++++D+
Sbjct: 232 LDISFNEIGSDGVQALADNATLKTLNIS-SNDIGDAGALALAVNTTLTELNTSCNRISDA 290

Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
           G   L     LT L++       A + +++A   L  L+++R +LS+ G    +   +L 
Sbjct: 291 GAQALANSDSLTSLDISDNGFGDAGVQAIAANTRLRRLDISRNRLSEAGVLAVAANTTLT 350

Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
            L +   EI       L   T L SL+    GIG EG   L     LK L L    +G +
Sbjct: 351 KLCIADCEIGTAGAQALAANTRLVSLDAGHNGIGTEGAQALARHATLKQLNLEKNPIGDA 410

Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
           G    +    L S+NL    ++D  LR LA  ++L++LN+   +IT  G  A  + + LT
Sbjct: 411 GAVAFADNATLRSLNLKGCKVTDSGLRVLATNATLRTLNVSDNRITAEGAKATAANSTLT 470

Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
            LD+    I D GA  L     L  L IC   LT  GV  +   ++L +L++ +N
Sbjct: 471 SLDVSHNGIEDEGALALAANTVLNVLNICYNALTVKGVTALAASTTLAVLDIREN 525



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 136/298 (45%), Gaps = 4/298 (1%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L ++++S +D+ D+G + L   + L  L+ + C +ISD G + L    +LTSL    +
Sbjct: 251 ATLKTLNISSNDIGDAGALALAVNTTLTELNTS-CNRISDAGAQALANSDSLTSLDIS-D 308

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N     G++A A    L +LD+ R      G++ +     L  L I  C  I  +  + L
Sbjct: 309 NGFGDAGVQAIAANTRLRRLDISRNRLSEAGVLAVAANTTLTKLCIADCE-IGTAGAQAL 367

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           +  T L SL    + +   G   L     L  LNLE  P+  A   + +   +L  LNL 
Sbjct: 368 AANTRLVSLDAGHNGIGTEGAQALARHATLKQLNLEKNPIGDAGAVAFADNATLRSLNLK 427

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
            C+++D G    +   +L+ LN+  N IT E        + L SL++   GI DEG + L
Sbjct: 428 GCKVTDSGLRVLATNATLRTLNVSDNRITAEGAKATAANSTLTSLDVSHNGIEDEGALAL 487

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL-AGLSSLKSL 353
                L  L +    +   G+  L+  T L  +++   G S    R L A +  LK+L
Sbjct: 488 AANTVLNVLNICYNALTVKGVTALAASTTLAVLDIRENGYSATIERALQAAVPQLKAL 545


>gi|168701212|ref|ZP_02733489.1| hypothetical protein GobsU_16936 [Gemmata obscuriglobus UQM 2246]
          Length = 410

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 139/303 (45%), Gaps = 15/303 (4%)

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           +TD  +  L+G  NL  L+++ + +TD+G+ +L  L  L+ L+L G         S  A 
Sbjct: 114 VTDQKLAELAGQPNLVVLRLNGASITDAGLKHLAALDGLSALSLHGT--------SRGAT 165

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
            +  Y  +     +D G  +   I  L  L+LG  E+TD     L  +  L  L L+   
Sbjct: 166 SAGSYRGI-----TDAGLNELRAIKGLTDLSLGGIEVTDAGARTLATMPQLRVLGLEGTK 220

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           I D  L NL  L  L  ++L+ T+V  +GL+HL+    L  + LS T ++D  +R+LA L
Sbjct: 221 ITDAALENLAPLTELTEIDLTFTKVTDAGLKHLARFKKLTRVRLSSTAVTDAGVRELAAL 280

Query: 348 SSLKSLNLDARQITDTGLAALTSLTG-LTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
             L  L+L   +  D G+ AL +    LT + L   R+ D GA  L     L  L +   
Sbjct: 281 PELTDLDLSYTKAGDGGVTALAAAPNRLTSVSLEKTRVGDEGAKALAAAPGLTRLNLGYT 340

Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
            + D GV  +    +LT L L     +TD  +  +     L  + +  + +T   +R L 
Sbjct: 341 RVGDDGVSALAAAPNLTGLTLVAT-RVTDDGVRSLFACRKLAYVELRETEVTDGAIRELL 399

Query: 467 HAR 469
            AR
Sbjct: 400 KAR 402



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 141/312 (45%), Gaps = 38/312 (12%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ---------- 93
           V D+ +  +A Q  +L+ + L+G+ +TD+GL HL     L +L  +   +          
Sbjct: 114 VTDQKLAELAGQ-PNLVVLRLNGASITDAGLKHLAALDGLSALSLHGTSRGATSAGSYRG 172

Query: 94  ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
           I+D GL  LR +  LT LS      +T  G +  A +  L  L LE              
Sbjct: 173 ITDAGLNELRAIKGLTDLSL-GGIEVTDAGARTLATMPQLRVLGLE-------------- 217

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
                         ITD+ ++ L+ LT L  + ++ +KVTD+G+ +L   +KLT + L  
Sbjct: 218 -----------GTKITDAALENLAPLTELTEIDLTFTKVTDAGLKHLARFKKLTRVRLSS 266

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS-LKVLNLGFNEITDECLVHL 272
             VT A +  L+AL  L  L+L+  +  D G    +   + L  ++L    + DE    L
Sbjct: 267 TAVTDAGVRELAALPELTDLDLSYTKAGDGGVTALAAAPNRLTSVSLEKTRVGDEGAKAL 326

Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
                L  LNL    +GD+G+  L    NL  L L  T+V   G+R L     L  + L 
Sbjct: 327 AAAPGLTRLNLGYTRVGDDGVSALAAAPNLTGLTLVATRVTDDGVRSLFACRKLAYVELR 386

Query: 333 FTGISDGSLRKL 344
            T ++DG++R+L
Sbjct: 387 ETEVTDGAIREL 398



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 106/223 (47%), Gaps = 11/223 (4%)

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-- 314
           L+L  +++TD+ L  L G  NL  L L+   I D GL +L  L  L  L L  T  G+  
Sbjct: 107 LSLAHHDVTDQKLAELAGQPNLVVLRLNGASITDAGLKHLAALDGLSALSLHGTSRGATS 166

Query: 315 ---------SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
                    +GL  L  +  L  ++L    ++D   R LA +  L+ L L+  +ITD  L
Sbjct: 167 AGSYRGITDAGLNELRAIKGLTDLSLGGIEVTDAGARTLATMPQLRVLGLEGTKITDAAL 226

Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
             L  LT LT +DL   ++TD+G  +L  FK L  + +    +TDAGV+ +  L  LT L
Sbjct: 227 ENLAPLTELTEIDLTFTKVTDAGLKHLARFKKLTRVRLSSTAVTDAGVRELAALPELTDL 286

Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHA 468
           +LS           L +    L S+++  +R+   G + L  A
Sbjct: 287 DLSYTKAGDGGVTALAAAPNRLTSVSLEKTRVGDEGAKALAAA 329


>gi|317420071|emb|CBN82107.1| Uncharacterized protein [Dicentrarchus labrax]
          Length = 889

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 114/410 (27%), Positives = 190/410 (46%), Gaps = 47/410 (11%)

Query: 5   DISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDL 64
           ++++ + N +   R L   +LE F  C LQ   L  YP   ++ +  + +  ++L  + L
Sbjct: 469 ELAELLLNHMSRERLLRPRTLELFFGCPLQKFVLNCYPYSTNELLRQLRA-FTALKHLSL 527

Query: 65  SGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
             S  +TDSGL      + LQ L+   C +++D  L+H+ GL +L  LS  +   +T  G
Sbjct: 528 VNSPLITDSGLSIFSSLAKLQYLNLASCSKLTDSCLQHITGLKSLCFLSLDQTK-VTDAG 586

Query: 124 MKAF--AGLINLVKLDLERCTRIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLSGLT 180
           M  +  +    L +L L +       LV L   + +L  L+IK        D+  L+ L+
Sbjct: 587 MVLYLQSAPSCLSQLSLNQTAVTEASLVVLPTCVPQLRLLSIKQTKV---KDVSALARLS 643

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR--- 237
           NL++L +  + VT+S + +L     L+ L+L G PV     D   AL  +  L L +   
Sbjct: 644 NLQTLNLDVTGVTESSLEHLSSHPTLSSLSLAGIPVA----DGNQALQIISDLRLTQLTL 699

Query: 238 ----------------------------CQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
                                        Q++D G  + S +  LK L+L   ++TD  L
Sbjct: 700 PGRHTVTDSGLSFLSRLSLLLELDLTDYTQVTDQGVSQLSTMTRLKKLSLSNTQVTDAGL 759

Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRH-LSGLTNLE 327
             L+GL  L+ L LD   +   G+ +L T L +L+ L L+ TQVG + +R  +     L 
Sbjct: 760 PSLRGLQELQELCLDRTAVTSRGVADLITCLPHLQVLGLASTQVGDTVVRRGVIRCNQLV 819

Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
            +NLS T I+D  L+ L  +  L  +NLD   ++  G+A L S T ++ +
Sbjct: 820 KLNLSRTRITDHGLKCLKHM-HLAQVNLDGTGVSLIGIANLLSFTNISSI 868



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 161/340 (47%), Gaps = 42/340 (12%)

Query: 166 NCI---TDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGC-PVTAAC 220
           NC    T+  ++ L   T LK L +  S  +TDSG++    L KL  LNL  C  +T +C
Sbjct: 503 NCYPYSTNELLRQLRAFTALKHLSLVNSPLITDSGLSIFSSLAKLQYLNLASCSKLTDSC 562

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKF--SKIGSLKVLNLGFNEITDECLVHLKG-LTN 277
           L  ++ L SL +L+L++ +++D G   +  S    L  L+L    +T+  LV L   +  
Sbjct: 563 LQHITGLKSLCFLSLDQTKVTDAGMVLYLQSAPSCLSQLSLNQTAVTEASLVVLPTCVPQ 622

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           L  L++    + D  +  L  L NL+ L L  T V  S L HLS    L S++L+   ++
Sbjct: 623 LRLLSIKQTKVKD--VSALARLSNLQTLNLDVTGVTESSLEHLSSHPTLSSLSLAGIPVA 680

Query: 338 DGSLRKLAGLSSLK--SLNLDAR--------------------------QITDTGLAALT 369
           DG+ + L  +S L+   L L  R                          Q+TD G++ L+
Sbjct: 681 DGN-QALQIISDLRLTQLTLPGRHTVTDSGLSFLSRLSLLLELDLTDYTQVTDQGVSQLS 739

Query: 370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH-IKDLSSLTLLNLS 428
           ++T L  L L   ++TD+G   LR  + L+ L +    +T  GV   I  L  L +L L+
Sbjct: 740 TMTRLKKLSLSNTQVTDAGLPSLRGLQELQELCLDRTAVTSRGVADLITCLPHLQVLGLA 799

Query: 429 QNCNLTDKTLEL-ISGLTGLVSLNVSNSRITSAGLRHLNH 467
            +  + D  +   +     LV LN+S +RIT  GL+ L H
Sbjct: 800 -STQVGDTVVRRGVIRCNQLVKLNLSRTRITDHGLKCLKH 838



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 145/283 (51%), Gaps = 22/283 (7%)

Query: 203 LQKLTLLNLEGCPV-----------TAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSK 250
           L+  TL    GCP+           T   L  L A  +L +L+L N   ++D G   FS 
Sbjct: 484 LRPRTLELFFGCPLQKFVLNCYPYSTNELLRQLRAFTALKHLSLVNSPLITDSGLSIFSS 543

Query: 251 IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL--TGLCNLKCLEL 307
           +  L+ LNL   +++TD CL H+ GL +L  L+LD   + D G+V    +    L  L L
Sbjct: 544 LAKLQYLNLASCSKLTDSCLQHITGLKSLCFLSLDQTKVTDAGMVLYLQSAPSCLSQLSL 603

Query: 308 SDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
           + T V  + L  L   +  L  +++  T + D S   LA LS+L++LNLD   +T++ L 
Sbjct: 604 NQTAVTEASLVVLPTCVPQLRLLSIKQTKVKDVS--ALARLSNLQTLNLDVTGVTESSLE 661

Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG---LTDAGVKHIKDLSSLT 423
            L+S   L+ L L G  + D G   L+   +LR  ++   G   +TD+G+  +  LS L 
Sbjct: 662 HLSSHPTLSSLSLAGIPVAD-GNQALQIISDLRLTQLTLPGRHTVTDSGLSFLSRLSLLL 720

Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
            L+L+    +TD+ +  +S +T L  L++SN+++T AGL  L 
Sbjct: 721 ELDLTDYTQVTDQGVSQLSTMTRLKKLSLSNTQVTDAGLPSLR 763



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 117/240 (48%), Gaps = 15/240 (6%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL--INLVKLDL 138
           SNLQ+L+ +    +++  LEHL     L+SLS        A G +A   +  + L +L L
Sbjct: 643 SNLQTLNLD-VTGVTESSLEHLSSHPTLSSLSL--AGIPVADGNQALQIISDLRLTQLTL 699

Query: 139 E-RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
             R T    GL  L  L  L  L++     +TD  +  LS +T LK L +S ++VTD+G+
Sbjct: 700 PGRHTVTDSGLSFLSRLSLLLELDLTDYTQVTDQGVSQLSTMTRLKKLSLSNTQVTDAGL 759

Query: 198 AYLKGLQKLTLLNLEGCPVTA-ACLDSLSALGSLFYLNLNRCQLSDDGCEK-FSKIGSLK 255
             L+GLQ+L  L L+   VT+    D ++ L  L  L L   Q+ D    +   +   L 
Sbjct: 760 PSLRGLQELQELCLDRTAVTSRGVADLITCLPHLQVLGLASTQVGDTVVRRGVIRCNQLV 819

Query: 256 VLNLGFNEITD---ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
            LNL    ITD   +CL H+    +L  +NLD  G+   G+ NL    N+  +  S+T+ 
Sbjct: 820 KLNLSRTRITDHGLKCLKHM----HLAQVNLDGTGVSLIGIANLLSFTNISSIRASNTRT 875


>gi|290983896|ref|XP_002674664.1| predicted protein [Naegleria gruberi]
 gi|284088255|gb|EFC41920.1| predicted protein [Naegleria gruberi]
          Length = 374

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 147/303 (48%), Gaps = 5/303 (1%)

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
           +W N  T + +  +  LT+L+  +I+  +++     YL  L +L  L++    +T + ++
Sbjct: 19  RWGNSETYNKLIMMKSLTDLRISKINFVEMS----KYLISLDQLISLDISKSLITDSIVE 74

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
            +S L  L YLN++   + + G    SK+  L  L +  N     CL ++  +  L SLN
Sbjct: 75  PISKLKQLTYLNVSDNSIGNYGVMHISKLEQLTNLVISKNRFGMNCLKYITNMRKLTSLN 134

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
           ++   IG+    ++  +  L  L +++  +G  G  H+  L +L S+ ++  GI +  ++
Sbjct: 135 INGNDIGNIAFEDIIKMKQLTSLNVNNINIGDKGAFHVGKLKHLTSLAIAKNGIHEEGVK 194

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
            +  L  +  L++        G   +  +  LT L++   RI D GA YL     L  L 
Sbjct: 195 FINELPQVTDLDIFGISFGPGGAKYIGEMKQLTKLNINSCRIGDEGATYLSGLTKLTKLS 254

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
           I    ++  GVK I++L  LT L++S N N+  +  + +SGL  L  L++  + +   G 
Sbjct: 255 ISSNSISAIGVKFIRELKLLTFLDISIN-NIGQQGSQYVSGLDKLAHLSIHRNNLGDEGA 313

Query: 463 RHL 465
           RH+
Sbjct: 314 RHI 316



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 140/291 (48%), Gaps = 3/291 (1%)

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           ITDS ++P+S L  L  L +S + + + G+ ++  L++LT L +        CL  ++ +
Sbjct: 68  ITDSIVEPISKLKQLTYLNVSDNSIGNYGVMHISKLEQLTNLVISKNRFGMNCLKYITNM 127

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
             L  LN+N   + +   E   K+  L  LN+    I D+   H+  L +L SL +   G
Sbjct: 128 RKLTSLNINGNDIGNIAFEDIIKMKQLTSLNVNNINIGDKGAFHVGKLKHLTSLAIAKNG 187

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           I +EG+  +  L  +  L++     G  G +++  +  L  +N++   I D     L+GL
Sbjct: 188 IHEEGVKFINELPQVTDLDIFGISFGPGGAKYIGEMKQLTKLNINSCRIGDEGATYLSGL 247

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
           + L  L++ +  I+  G+  +  L  LT LD+    I   G+ Y+     L  L I    
Sbjct: 248 TKLTKLSISSNSISAIGVKFIRELKLLTFLDISINNIGQQGSQYVSGLDKLAHLSIHRNN 307

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCN-LTDKTLELISGLTGLVSLNVSNSRI 457
           L D G +HI D+  LT  NL  NCN ++D+     S L  L S ++S + I
Sbjct: 308 LGDEGARHIGDMKWLT--NLDINCNSISDEGALYFSDLKQLTSFDISGNNI 356



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 144/330 (43%), Gaps = 27/330 (8%)

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
           + +LT L   + N +     K    L  L+ LD+ +       +  +  L +L  LN+  
Sbjct: 32  MKSLTDLRISKINFVEMS--KYLISLDQLISLDISKSLITDSIVEPISKLKQLTYLNVS- 88

Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
            N I +  +  +S L  L +L IS ++   + + Y+  ++KLT LN+ G  +     + +
Sbjct: 89  DNSIGNYGVMHISKLEQLTNLVISKNRFGMNCLKYITNMRKLTSLNINGNDIGNIAFEDI 148

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV-------------- 270
             +  L  LN+N   + D G     K+  L  L +  N I +E +               
Sbjct: 149 IKMKQLTSLNVNNINIGDKGAFHVGKLKHLTSLAIAKNGIHEEGVKFINELPQVTDLDIF 208

Query: 271 ----------HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
                     ++  +  L  LN++SC IGDEG   L+GL  L  L +S   + + G++ +
Sbjct: 209 GISFGPGGAKYIGEMKQLTKLNINSCRIGDEGATYLSGLTKLTKLSISSNSISAIGVKFI 268

Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
             L  L  +++S   I     + ++GL  L  L++    + D G   +  +  LT+LD+ 
Sbjct: 269 RELKLLTFLDISINNIGQQGSQYVSGLDKLAHLSIHRNNLGDEGARHIGDMKWLTNLDIN 328

Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTD 410
              I+D GA Y  + K L S +I G  + D
Sbjct: 329 CNSISDEGALYFSDLKQLTSFDISGNNICD 358



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 151/343 (44%), Gaps = 43/343 (12%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDG-----GLEHLRGLSNLTSLS 112
            L+S+D+S S +TDS    ++  S L+ L +   + +SD      G+ H+  L  LT+L 
Sbjct: 57  QLISLDISKSLITDS---IVEPISKLKQLTY---LNVSDNSIGNYGVMHISKLEQLTNLV 110

Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE---SLNIKWCNCIT 169
             +N      GM     + N+ KL          G +  + ++K++   SLN+   N I 
Sbjct: 111 ISKNRF----GMNCLKYITNMRKLTSLNINGNDIGNIAFEDIIKMKQLTSLNVNNIN-IG 165

Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
           D     +  L +L SL I+ + + + G+ ++  L ++T L++ G          +  +  
Sbjct: 166 DKGAFHVGKLKHLTSLAIAKNGIHEEGVKFINELPQVTDLDIFGISFGPGGAKYIGEMKQ 225

Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
           L  LN+N C++ D+G                          +L GLT L  L++ S  I 
Sbjct: 226 LTKLNINSCRIGDEGA------------------------TYLSGLTKLTKLSISSNSIS 261

Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
             G+  +  L  L  L++S   +G  G +++SGL  L  +++    + D   R +  +  
Sbjct: 262 AIGVKFIRELKLLTFLDISINNIGQQGSQYVSGLDKLAHLSIHRNNLGDEGARHIGDMKW 321

Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
           L +L+++   I+D G    + L  LT  D+ G  I D  A  L
Sbjct: 322 LTNLDINCNSISDEGALYFSDLKQLTSFDISGNNICDEVANRL 364



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 106/206 (51%), Gaps = 1/206 (0%)

Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
           ITD  +  +  L  L  LN+    IG+ G+++++ L  L  L +S  + G + L++++ +
Sbjct: 68  ITDSIVEPISKLKQLTYLNVSDNSIGNYGVMHISKLEQLTNLVISKNRFGMNCLKYITNM 127

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
             L S+N++   I + +   +  +  L SLN++   I D G   +  L  LT L +    
Sbjct: 128 RKLTSLNINGNDIGNIAFEDIIKMKQLTSLNVNNINIGDKGAFHVGKLKHLTSLAIAKNG 187

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
           I + G  ++     +  L+I G      G K+I ++  LT LN++ +C + D+    +SG
Sbjct: 188 IHEEGVKFINELPQVTDLDIFGISFGPGGAKYIGEMKQLTKLNIN-SCRIGDEGATYLSG 246

Query: 444 LTGLVSLNVSNSRITSAGLRHLNHAR 469
           LT L  L++S++ I++ G++ +   +
Sbjct: 247 LTKLTKLSISSNSISAIGVKFIRELK 272


>gi|299066813|emb|CBJ38007.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
           solanacearum CMR15]
          Length = 457

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 107/386 (27%), Positives = 178/386 (46%), Gaps = 29/386 (7%)

Query: 81  SNLQSLDFNFCI-QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
           ++L+ LD + C   I+  G+ HL  L  L  L+ R N  I A+G +  A    L  L++ 
Sbjct: 63  ASLKELDLSQCRGPITAAGMAHLSRLP-LVRLNVR-NKRIGAKGARLLANHPTLTSLNVS 120

Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
                  G   L G M+L +LN+   N +   + K L+    L+SL +S +++ D     
Sbjct: 121 NNRIGPEGAQALAGNMRLTTLNVS-GNRLGVEEAKALAANQTLRSLDVSDNRIGD----- 174

Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
                       EG  V AAC         L  L+ NR  +  DG    +   +L+ L +
Sbjct: 175 ------------EGARVLAACTQ-------LTTLDANRNGIGVDGATALAACPTLRSLGI 215

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
           G N I D  ++ L     L +LN++S G+G  G+  L     L  L L    +G++G   
Sbjct: 216 GGNAIGDAGVLALAANARLTTLNVESTGVGAVGVGALAASKALTWLRLDGNGIGNAGATA 275

Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
           L+  T L +++L+   I     + LA  + L +L+L   +I DTG+ AL +   L  L +
Sbjct: 276 LAASTRLTTLHLARNKIGAEGAQALAANTKLTTLDLGYNKIGDTGVRALAANATLVSLTV 335

Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
               + D  A  L   + L +L++ G G+ D G K +    +LT L++S N ++ +    
Sbjct: 336 RRNDLKDESAVILAASRTLTTLDLSGNGIEDQGAKALAANPTLTTLDVSSN-DIKNAGAR 394

Query: 440 LISGLTGLVSLNVSNSRITSAGLRHL 465
            ++    LV L++ ++R+  AG R L
Sbjct: 395 ALAANARLVWLDLRHNRMEEAGTRAL 420



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 162/377 (42%), Gaps = 38/377 (10%)

Query: 57  SSLLSVDLSG--SDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSF 113
           +SL  +DLS     +T +G+ HL   S L  +  N    +I   G   L     LTSL+ 
Sbjct: 63  ASLKELDLSQCRGPITAAGMAHL---SRLPLVRLNVRNKRIGAKGARLLANHPTLTSLNV 119

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL---MKLESLNIKWCNCITD 170
             NN I  +G +A AG + L  L++    R+  G+   K L     L SL++   N I D
Sbjct: 120 S-NNRIGPEGAQALAGNMRLTTLNVS-GNRL--GVEEAKALAANQTLRSLDVS-DNRIGD 174

Query: 171 SDMKPLSGLTNL------------------------KSLQISCSKVTDSGIAYLKGLQKL 206
              + L+  T L                        +SL I  + + D+G+  L    +L
Sbjct: 175 EGARVLAACTQLTTLDANRNGIGVDGATALAACPTLRSLGIGGNAIGDAGVLALAANARL 234

Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
           T LN+E   V A  + +L+A  +L +L L+   + + G    +    L  L+L  N+I  
Sbjct: 235 TTLNVESTGVGAVGVGALAASKALTWLRLDGNGIGNAGATALAASTRLTTLHLARNKIGA 294

Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
           E    L   T L +L+L    IGD G+  L     L  L +    +       L+    L
Sbjct: 295 EGAQALAANTKLTTLDLGYNKIGDTGVRALAANATLVSLTVRRNDLKDESAVILAASRTL 354

Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
            +++LS  GI D   + LA   +L +L++ +  I + G  AL +   L  LDL   R+ +
Sbjct: 355 TTLDLSGNGIEDQGAKALAANPTLTTLDVSSNDIKNAGARALAANARLVWLDLRHNRMEE 414

Query: 387 SGAAYLRNFKNLRSLEI 403
           +G   L   + L SL +
Sbjct: 415 AGTRALLANRTLSSLGV 431


>gi|149175637|ref|ZP_01854257.1| putative serine/threonine-protein kinase [Planctomyces maris DSM
           8797]
 gi|148845622|gb|EDL59965.1| putative serine/threonine-protein kinase [Planctomyces maris DSM
           8797]
          Length = 718

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 109/200 (54%), Gaps = 10/200 (5%)

Query: 228 GSLFYLNLNRCQLSDDG-CEKFSKIGSLKVLNLGFNEI-------TDECLVHLKGLTNLE 279
            +++ LN ++C++  DG  E  +++  L V++    EI       T E +  LKGL  LE
Sbjct: 510 AAVWLLN-HQCEIIIDGRYEPVTQVQELPVVDFYIREIKFHPQTITREVMAPLKGLAKLE 568

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISD 338
           +L+L+ C + D+ L  L G   LK L+L +T + ++GL H+S L NL  ++L     I+D
Sbjct: 569 TLHLEDCHVMDDALAPLEGKLTLKTLDLHETGLTNAGLSHISSLLNLTHLSLQKNREITD 628

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L  L S+NLD   ITD G+  +     L  L++   +I+D+    L     +
Sbjct: 629 EGLQALANLKKLSSINLDRLNITDEGITFIKHNPRLDWLNIKDTQISDTSIPLLIKLNRM 688

Query: 399 RSLEICGGGLTDAGVKHIKD 418
           ++L + G  +TD G++ IK+
Sbjct: 689 KNLYLEGSKITDQGIQKIKN 708



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 93/181 (51%), Gaps = 4/181 (2%)

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
           R       Q +      I  +K   +  TR    +  LKGL KLE+L+++ C+ + D+ +
Sbjct: 526 RYEPVTQVQELPVVDFYIREIKFHPQTITR--EVMAPLKGLAKLETLHLEDCHVMDDA-L 582

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE-GCPVTAACLDSLSALGSLFY 232
            PL G   LK+L +  + +T++G++++  L  LT L+L+    +T   L +L+ L  L  
Sbjct: 583 APLEGKLTLKTLDLHETGLTNAGLSHISSLLNLTHLSLQKNREITDEGLQALANLKKLSS 642

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           +NL+R  ++D+G         L  LN+   +I+D  +  L  L  +++L L+   I D+G
Sbjct: 643 INLDRLNITDEGITFIKHNPRLDWLNIKDTQISDTSIPLLIKLNRMKNLYLEGSKITDQG 702

Query: 293 L 293
           +
Sbjct: 703 I 703



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 79/146 (54%), Gaps = 2/146 (1%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           + L ++ L    V D  L  L+    L++LD +    +++ GL H+  L NLT LS ++N
Sbjct: 565 AKLETLHLEDCHVMDDALAPLEGKLTLKTLDLHET-GLTNAGLSHISSLLNLTHLSLQKN 623

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             IT +G++A A L  L  ++L+R      G+  +K   +L+ LNIK    I+D+ +  L
Sbjct: 624 REITDEGLQALANLKKLSSINLDRLNITDEGITFIKHNPRLDWLNIK-DTQISDTSIPLL 682

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKG 202
             L  +K+L +  SK+TD GI  +K 
Sbjct: 683 IKLNRMKNLYLEGSKITDQGIQKIKN 708



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 8/191 (4%)

Query: 91  CIQISDGGLEHLRGLSNLTSLSFR------RNNAITAQGMKAFAGLINLVKLDLERCTRI 144
           C  I DG  E +  +  L  + F           IT + M    GL  L  L LE C  +
Sbjct: 519 CEIIIDGRYEPVTQVQELPVVDFYIREIKFHPQTITREVMAPLKGLAKLETLHLEDCHVM 578

Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGL 203
              L  L+G + L++L++     +T++ +  +S L NL  L +  ++ +TD G+  L  L
Sbjct: 579 DDALAPLEGKLTLKTLDLHETG-LTNAGLSHISSLLNLTHLSLQKNREITDEGLQALANL 637

Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
           +KL+ +NL+   +T   +  +     L +LN+   Q+SD       K+  +K L L  ++
Sbjct: 638 KKLSSINLDRLNITDEGITFIKHNPRLDWLNIKDTQISDTSIPLLIKLNRMKNLYLEGSK 697

Query: 264 ITDECLVHLKG 274
           ITD+ +  +K 
Sbjct: 698 ITDQGIQKIKN 708



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 7/139 (5%)

Query: 336 ISDGSLRKLAGLSSLKSLNLDARQI-------TDTGLAALTSLTGLTHLDLFGARITDSG 388
           I DG    +  +  L  ++   R+I       T   +A L  L  L  L L    + D  
Sbjct: 522 IIDGRYEPVTQVQELPVVDFYIREIKFHPQTITREVMAPLKGLAKLETLHLEDCHVMDDA 581

Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
            A L     L++L++   GLT+AG+ HI  L +LT L+L +N  +TD+ L+ ++ L  L 
Sbjct: 582 LAPLEGKLTLKTLDLHETGLTNAGLSHISSLLNLTHLSLQKNREITDEGLQALANLKKLS 641

Query: 449 SLNVSNSRITSAGLRHLNH 467
           S+N+    IT  G+  + H
Sbjct: 642 SINLDRLNITDEGITFIKH 660


>gi|290972542|ref|XP_002669011.1| predicted protein [Naegleria gruberi]
 gi|284082551|gb|EFC36267.1| predicted protein [Naegleria gruberi]
          Length = 335

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 163/348 (46%), Gaps = 33/348 (9%)

Query: 96  DGGLEHLRGLSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
           D  LE +  +SN + L+     ++ +T Q     A L NL  L + RC+           
Sbjct: 3   DCNLETINEISNHSKLTELCINSSELTPQSAHLIAKLSNLTNLSINRCS----------- 51

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
                         I D     +S L  +K L+   + +   G   +  ++ LTLL L G
Sbjct: 52  --------------IADLGTNNISQLKQIKYLRACENGIGSIGARNIGEMKNLTLLELSG 97

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHL 272
             +    L+S+  L  L YL+L   +++D G +  + +  L  LNL  N+IT+ E + HL
Sbjct: 98  NRIGDDGLESIGKLSKLAYLDLGENEITDQGLKSLNNLEKLVTLNLKNNKITNLETISHL 157

Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
           K LTNL+   + +  IG+EG   +  +  LK L ++D  + S G + LSG+T L  I L 
Sbjct: 158 K-LTNLD---VTTNKIGNEGAKYIAEMKRLKVLRINDNHITSDGAKILSGMTQLTCIFLC 213

Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
              I D     +  L +L+ L+L    IT  GL  +  L  L  L +   +I+D GA Y+
Sbjct: 214 DNLIGDEGALSIGLLYNLEYLDLKGAGITGEGLKTICELINLRRLHVSHNQISDLGAKYI 273

Query: 393 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
               NL +L +C   +   G + I ++ SL  L++++N NLT   ++L
Sbjct: 274 SGMNNLTALNVCDCNIGFEGAQFISNMQSLADLDITKN-NLTTNGIKL 320



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 147/310 (47%), Gaps = 37/310 (11%)

Query: 167 CITDSDMKPLSG-----LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
           CI  S++ P S      L+NL +L I+   + D G   +  L+++  L      + +   
Sbjct: 22  CINSSELTPQSAHLIAKLSNLTNLSINRCSIADLGTNNISQLKQIKYLRACENGIGSIGA 81

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
            ++  + +L  L L+  ++ DDG E   K+  L  L+LG NEITD+ L  L  L  L +L
Sbjct: 82  RNIGEMKNLTLLELSGNRIGDDGLESIGKLSKLAYLDLGENEITDQGLKSLNNLEKLVTL 141

Query: 282 NLDSCGIGDEGLVNLTGLCNLKC--LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
           NL      +  + NL  + +LK   L+++  ++G+ G +++                   
Sbjct: 142 NLK-----NNKITNLETISHLKLTNLDVTTNKIGNEGAKYI------------------- 177

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
                A +  LK L ++   IT  G   L+ +T LT + L    I D GA  +    NL 
Sbjct: 178 -----AEMKRLKVLRINDNHITSDGAKILSGMTQLTCIFLCDNLIGDEGALSIGLLYNLE 232

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L++ G G+T  G+K I +L +L  L++S N  ++D   + ISG+  L +LNV +  I  
Sbjct: 233 YLDLKGAGITGEGLKTICELINLRRLHVSHN-QISDLGAKYISGMNNLTALNVCDCNIGF 291

Query: 460 AGLRHLNHAR 469
            G + +++ +
Sbjct: 292 EGAQFISNMQ 301



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 153/320 (47%), Gaps = 25/320 (7%)

Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
           CN  T +++   S LT    L I+ S++T      +  L  LT L++  C +     +++
Sbjct: 4   CNLETINEISNHSKLT---ELCINSSELTPQSAHLIAKLSNLTNLSINRCSIADLGTNNI 60

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
           S L  + YL      +   G     ++ +L +L L  N I D+ L  +  L+ L  L+L 
Sbjct: 61  SQLKQIKYLRACENGIGSIGARNIGEMKNLTLLELSGNRIGDDGLESIGKLSKLAYLDLG 120

Query: 285 SCGIGDEGL-------------------VNLTGLCNLKC--LELSDTQVGSSGLRHLSGL 323
              I D+GL                    NL  + +LK   L+++  ++G+ G ++++ +
Sbjct: 121 ENEITDQGLKSLNNLEKLVTLNLKNNKITNLETISHLKLTNLDVTTNKIGNEGAKYIAEM 180

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
             L+ + ++   I+    + L+G++ L  + L    I D G  ++  L  L +LDL GA 
Sbjct: 181 KRLKVLRINDNHITSDGAKILSGMTQLTCIFLCDNLIGDEGALSIGLLYNLEYLDLKGAG 240

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
           IT  G   +    NLR L +    ++D G K+I  +++LT LN+  +CN+  +  + IS 
Sbjct: 241 ITGEGLKTICELINLRRLHVSHNQISDLGAKYISGMNNLTALNVC-DCNIGFEGAQFISN 299

Query: 444 LTGLVSLNVSNSRITSAGLR 463
           +  L  L+++ + +T+ G++
Sbjct: 300 MQSLADLDITKNNLTTNGIK 319



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 67/128 (52%), Gaps = 1/128 (0%)

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
           ++ +++  S L  L +++ ++T      +  L+ LT+L +    I D G   +   K ++
Sbjct: 8   TINEISNHSKLTELCINSSELTPQSAHLIAKLSNLTNLSINRCSIADLGTNNISQLKQIK 67

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L  C  G+   G ++I ++ +LTLL LS N  + D  LE I  L+ L  L++  + IT 
Sbjct: 68  YLRACENGIGSIGARNIGEMKNLTLLELSGN-RIGDDGLESIGKLSKLAYLDLGENEITD 126

Query: 460 AGLRHLNH 467
            GL+ LN+
Sbjct: 127 QGLKSLNN 134


>gi|290994540|ref|XP_002679890.1| predicted protein [Naegleria gruberi]
 gi|284093508|gb|EFC47146.1| predicted protein [Naegleria gruberi]
          Length = 293

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 119/227 (52%), Gaps = 1/227 (0%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           +G +  S+I  L  L++  N+I  E    +  +  L SLN+   GIG EG   ++ +  L
Sbjct: 17  EGGKFISEIKQLTSLDISDNQIGVEGAKLISEMKQLTSLNIFKNGIGVEGAKLISEMKQL 76

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L++S   +   G++ +S +  L S+++S   I     + ++G+  L SLN+   +I+D
Sbjct: 77  TSLDISGNLIYDEGVKSISEMKQLTSLDISKNEIGVEGAKLISGMKQLTSLNISKNEISD 136

Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
            G   ++ +  LT L ++ + I D GA YL   K L SL+I    +   G K I ++  L
Sbjct: 137 EGAKLISEMKQLTSLTIYKSGIDDKGAKYLSEIKQLTSLDISSNPMGVEGAKFISEMKQL 196

Query: 423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           T L++S N  + D+  E ISG+  L SLN+SN+ I   G + ++  +
Sbjct: 197 TSLDISNNL-IYDEGAEFISGMKQLTSLNISNNIILDEGAKLISEMK 242



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 138/280 (49%), Gaps = 1/280 (0%)

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           +  L SL I  +++   G  ++  +++LT L++    +       +S +  L  LN+ + 
Sbjct: 1   MKQLTSLSIGVNEIGVEGGKFISEIKQLTSLDISDNQIGVEGAKLISEMKQLTSLNIFKN 60

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
            +  +G +  S++  L  L++  N I DE +  +  +  L SL++    IG EG   ++G
Sbjct: 61  GIGVEGAKLISEMKQLTSLDISGNLIYDEGVKSISEMKQLTSLDISKNEIGVEGAKLISG 120

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
           +  L  L +S  ++   G + +S +  L S+ +  +GI D   + L+ +  L SL++ + 
Sbjct: 121 MKQLTSLNISKNEISDEGAKLISEMKQLTSLTIYKSGIDDKGAKYLSEIKQLTSLDISSN 180

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
            +   G   ++ +  LT LD+    I D GA ++   K L SL I    + D G K I +
Sbjct: 181 PMGVEGAKFISEMKQLTSLDISNNLIYDEGAEFISGMKQLTSLNISNNIILDEGAKLISE 240

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
           +  LT L++  N  + D+  + ISG+  L SL V  +RI+
Sbjct: 241 MKQLTSLDICYN-EIGDEGAKFISGMKQLTSLYVYANRIS 279



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 118/237 (49%)

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           K +S +  L SL I  + +   G   +  +++LT L++ G  +    + S+S +  L  L
Sbjct: 44  KLISEMKQLTSLNIFKNGIGVEGAKLISEMKQLTSLDISGNLIYDEGVKSISEMKQLTSL 103

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           ++++ ++  +G +  S +  L  LN+  NEI+DE    +  +  L SL +   GI D+G 
Sbjct: 104 DISKNEIGVEGAKLISGMKQLTSLNISKNEISDEGAKLISEMKQLTSLTIYKSGIDDKGA 163

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
             L+ +  L  L++S   +G  G + +S +  L S+++S   I D     ++G+  L SL
Sbjct: 164 KYLSEIKQLTSLDISSNPMGVEGAKFISEMKQLTSLDISNNLIYDEGAEFISGMKQLTSL 223

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
           N+    I D G   ++ +  LT LD+    I D GA ++   K L SL +    ++D
Sbjct: 224 NISNNIILDEGAKLISEMKQLTSLDICYNEIGDEGAKFISGMKQLTSLYVYANRISD 280



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 106/216 (49%), Gaps = 3/216 (1%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
           + +   L SLD +  + I D G++ +  +  LTSL   +N  I  +G K  +G+  L  L
Sbjct: 70  ISEMKQLTSLDISGNL-IYDEGVKSISEMKQLTSLDISKNE-IGVEGAKLISGMKQLTSL 127

Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
           ++ +      G   +  + +L SL I + + I D   K LS +  L SL IS + +   G
Sbjct: 128 NISKNEISDEGAKLISEMKQLTSLTI-YKSGIDDKGAKYLSEIKQLTSLDISSNPMGVEG 186

Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
             ++  +++LT L++    +     + +S +  L  LN++   + D+G +  S++  L  
Sbjct: 187 AKFISEMKQLTSLDISNNLIYDEGAEFISGMKQLTSLNISNNIILDEGAKLISEMKQLTS 246

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           L++ +NEI DE    + G+  L SL + +  I DE 
Sbjct: 247 LDICYNEIGDEGAKFISGMKQLTSLYVYANRISDEA 282


>gi|254416421|ref|ZP_05030174.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
           PCC 7420]
 gi|196176859|gb|EDX71870.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
           PCC 7420]
          Length = 477

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 135/406 (33%), Positives = 209/406 (51%), Gaps = 42/406 (10%)

Query: 73  GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGL 130
           G   +KD S L  L     + + +  +  +  LS LTSL+  +  NN IT     +    
Sbjct: 84  GYNQIKDVSPLSGLTNLTVLNLWNNQITDISSLSGLTSLTELYLNNNQITDISPLSGLTN 143

Query: 131 INLVKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITD--------------SDMK 174
           + ++ L+  + T I    GL +L GL+ L    IK  + ++               +D+ 
Sbjct: 144 LTVLNLNNNQITDISPLSGLTSLTGLI-LGGNQIKDVSPLSGLTNLTVLNLNNNQITDIS 202

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           PLSGLT+L  L +  +++TD  I+ L GL  LT+L L    +T   +  LS L +L  L 
Sbjct: 203 PLSGLTSLTVLILYSNQITD--ISSLSGLTSLTVLILSDNQITD--ISPLSGLTNLDALY 258

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           LN  Q++D      S + +L  L L  N+ITD  +  L GLTNL++L L++  I D  + 
Sbjct: 259 LNNNQITD--ISPLSGLTNLDALYLNNNQITD--ISPLSGLTNLDALYLNNNQITD--IS 312

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
            L+GL NL  L L+  Q+  + +  LSGLTNL+++ L+   I+D  +  L  L++L  L 
Sbjct: 313 PLSGLTNLDALYLNSNQI--TDISLLSGLTNLDALYLNSNQITD--ISPLLELTNLNYLI 368

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
           LD  QITD  ++ L+ LT LT L L   +ITD   + L    NL  L +    +TD  V 
Sbjct: 369 LDNNQITD--ISPLSGLTNLTILILDNNQITD--ISPLSGLTNLGGLILNSNQITD--VS 422

Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
            +  L++LT+LNL+ N  +TD  +  +SGLT L  L++ ++ I   
Sbjct: 423 PLSGLTNLTVLNLNSN-QITD--VSPLSGLTNLRRLHLKDNPIPQP 465


>gi|46447466|ref|YP_008831.1| hypothetical protein pc1832 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401107|emb|CAF24556.1| hypothetical protein pc1832 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 456

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 118/223 (52%), Gaps = 4/223 (1%)

Query: 65  SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
           + +D+TD+ L+ LK+C NL+ LD   C   +D GL HL  L+ L  L       +T  G+
Sbjct: 232 NNADLTDAHLLALKNCKNLKVLDLQECWNFTDAGLAHLTPLTALQHLDLTGCFRVTDTGL 291

Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
              + L+ L  L+L  C     GLV+LK L+ L+ L++  C  +TD+ +  L  L  L+ 
Sbjct: 292 AHLSPLVALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGLAHLRPLVALQH 351

Query: 185 LQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLS 241
           L ++ C  +TD G+A+L  L  L  L+L  C  +T   L  L +L +L +LNL+ C  L+
Sbjct: 352 LNLTNCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRSLVALQHLNLSGCSYLT 411

Query: 242 DDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNL 283
           D G      + +L+ L+L    E+TD  L H K L     L+L
Sbjct: 412 DAGLAHLRPLVALQHLDLANCYELTDAGLAHFKFLAATTHLDL 454



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 120/219 (54%), Gaps = 7/219 (3%)

Query: 216 VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLK 273
           +T A L +L    +L  L+L  C   +D G    + + +L+ L+L G   +TD  L HL 
Sbjct: 236 LTDAHLLALKNCKNLKVLDLQECWNFTDAGLAHLTPLTALQHLDLTGCFRVTDTGLAHLS 295

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS 332
            L  L+ LNL  C + D GLV+L  L  LK L+L     +  +GL HL  L  L+ +NL+
Sbjct: 296 PLVALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGLAHLRPLVALQHLNLT 355

Query: 333 F-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGA 389
               I+D  L  L  L +LK L+L    ++T  GLA L SL  L HL+L G + +TD+G 
Sbjct: 356 NCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRSLVALQHLNLSGCSYLTDAGL 415

Query: 390 AYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
           A+LR    L+ L++     LTDAG+ H K L++ T L+L
Sbjct: 416 AHLRPLVALQHLDLANCYELTDAGLAHFKFLAATTHLDL 454



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 90/156 (57%), Gaps = 2/156 (1%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           +L  ++L G D+TD+GL+HLK    L+ LD   C  ++D GL HLR L  L  L+     
Sbjct: 299 ALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGLAHLRPLVALQHLNLTNCE 358

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
            IT  G+     L+ L  LDL +C ++ G GL  L+ L+ L+ LN+  C+ +TD+ +  L
Sbjct: 359 NITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRSLVALQHLNLSGCSYLTDAGLAHL 418

Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNL 211
             L  L+ L ++ C ++TD+G+A+ K L   T L+L
Sbjct: 419 RPLVALQHLDLANCYELTDAGLAHFKFLAATTHLDL 454



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLG--FNEITDECLVHLKGLTNLESLNLDSC-GIGDEG 292
           N   L+D          +LKVL+L   +N  TD  L HL  LT L+ L+L  C  + D G
Sbjct: 232 NNADLTDAHLLALKNCKNLKVLDLQECWN-FTDAGLAHLTPLTALQHLDLTGCFRVTDTG 290

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLK 351
           L +L+ L  L+ L L    +  +GL HL  L  L+ ++L     ++D  L  L  L +L+
Sbjct: 291 LAHLSPLVALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGLAHLRPLVALQ 350

Query: 352 SLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGL 408
            LNL +   ITD GLA LT L  L HLDL    ++T +G A LR+   L+ L + G   L
Sbjct: 351 HLNLTNCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRSLVALQHLNLSGCSYL 410

Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
           TDAG+ H++ L +L  L+L+    LTD  L     L     L++
Sbjct: 411 TDAGLAHLRPLVALQHLDLANCYELTDAGLAHFKFLAATTHLDL 454



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 115/221 (52%), Gaps = 7/221 (3%)

Query: 252 GSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD 309
             ++ LN   N ++TD  L+ LK   NL+ L+L  C    D GL +LT L  L+ L+L+ 
Sbjct: 223 NEIEALNFSNNADLTDAHLLALKNCKNLKVLDLQECWNFTDAGLAHLTPLTALQHLDLTG 282

Query: 310 -TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAA 367
             +V  +GL HLS L  L+ +NL    ++D  L  L  L +LK L+L     +TD GLA 
Sbjct: 283 CFRVTDTGLAHLSPLVALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGLAH 342

Query: 368 LTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLL 425
           L  L  L HL+L     ITD G A+L     L+ L++     LT  G+  ++ L +L  L
Sbjct: 343 LRPLVALQHLNLTNCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRSLVALQHL 402

Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHL 465
           NLS    LTD  L  +  L  L  L+++N   +T AGL H 
Sbjct: 403 NLSGCSYLTDAGLAHLRPLVALQHLDLANCYELTDAGLAHF 443



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 58  SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
           +L  ++LSG S +TD+GL HL+    LQ LD   C +++D GL H + L+  T L  R
Sbjct: 398 ALQHLNLSGCSYLTDAGLAHLRPLVALQHLDLANCYELTDAGLAHFKFLAATTHLDLR 455


>gi|186701224|gb|ACC91251.1| leucine-rich repeat family protein [Arabidopsis halleri]
          Length = 600

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 120/436 (27%), Positives = 200/436 (45%), Gaps = 76/436 (17%)

Query: 98  GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMK 156
           G +H     ++ ++  R  ++I A+ M    G +NL+ L+L  C RI+   L  + GL  
Sbjct: 58  GFKH-----SVENIDLRGESSINAEWMAYIGGFVNLISLNLSDCQRINSSTLWPITGLTS 112

Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
           L  L++  C  +TD+ +K L  ++NLK L IS + VT  GI+ L  L+KL+LL+L G PV
Sbjct: 113 LTELDLSRCWKVTDAGIKHLQSVSNLKKLWISQTGVTKVGISLLASLKKLSLLDLGGLPV 172

Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
           T   L +L AL  L YL++    +++ G     +  +L  LNL +  +T         + 
Sbjct: 173 TDHNLIALQALTKLEYLDIWGSNVTNQGAISILQFSNLSFLNLSWTSVTQT-----PNIP 227

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELS------DTQ--------------VGSSG 316
           +LE L+++ C I  E   + + L +LK L LS      +T+              V  + 
Sbjct: 228 HLECLHMNMCTIVSEPKTH-SSLASLKKLVLSGANFSAETEALSFTNKSSITYLDVSKTS 286

Query: 317 LRHLSGLT---NLESINLSFTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLA------ 366
           L++ S L    NLE ++LS T   D S+  +A +  +L++LN+   +IT  G+       
Sbjct: 287 LQNFSFLETMINLEHLDLSSTAFGDDSVGFVACVGENLRNLNVSETKITSAGVGNLAGHV 346

Query: 367 ---------------------------------ALTSLTGLTHLDLFGARITDSGAAYLR 393
                                             +TS+ G            +   A L+
Sbjct: 347 PQLETFSLSQTFVDDLSILLISTMMPCVKALDLGMTSIRGFILQQSPQEEQAEPSLAALQ 406

Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
           +  +L++L +    L D  +  +  L+ LT L+L ++ +LTD TL  +S L  LVSL V 
Sbjct: 407 SLTSLKTLSLEHPYLGDTALSALSSLTGLTHLSL-RSTSLTDSTLHHLSSLPNLVSLGVR 465

Query: 454 NSRITSAGLRHLNHAR 469
           ++ +TS GL      +
Sbjct: 466 DAVLTSNGLEKFRPPK 481


>gi|299065269|emb|CBJ36437.1| leucine-rich-repeat type III effector protein (GALA8) [Ralstonia
           solanacearum CMR15]
          Length = 524

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 115/381 (30%), Positives = 172/381 (45%), Gaps = 6/381 (1%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR----RNNAITAQGMKAFAGLINLVKL 136
           ++++ +D + C   S      + GL  L  L       ++  +T+ G +A A    L  L
Sbjct: 103 ASVRHIDLSGCNATSSTSATSVAGLKYLAKLPITSLVIQDAGMTSVGARALAASDTLTSL 162

Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
           DL        G   L     L +LN+   N I     + L+    L +L +  +K+ D+G
Sbjct: 163 DLRGNKITDLGAQALATSRTLTTLNLD-TNTIGAKGAQALAASRTLTTLNLRGNKIEDAG 221

Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
              L     LT L+ EGC +  A + +L+A  SL  LNL    + D G +  +   +L  
Sbjct: 222 AQALAASTTLTSLSAEGCRIGLAGVQALAASRSLTTLNLAGNNIDDAGAQALAASRTLTT 281

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
           L+L  N+I D   + L     L SL +D C IG  G   L    +L  L +S   VG +G
Sbjct: 282 LDLSANKIGDAGALALAASRTLASLEVDHCEIGAAGAQALATSDSLAALNISHNPVGDAG 341

Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
            + L+    L SI      I     + LA   SL SL+LDA QI D G  AL +   LT 
Sbjct: 342 AQALAICRTLTSIKAKDCQIGAAGAQALAASDSLTSLDLDANQIGDDGAQALATSNTLTS 401

Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
           L++    I D G   L   + L SL++    +    V+ + +  +LT LN+S N N+ D 
Sbjct: 402 LNVRYNTIGDLGVQALAANRLLESLDVSDNKIGITSVQALAENCTLTSLNVSGN-NIGDA 460

Query: 437 TLELISGLTGLVSLNVSNSRI 457
             +L++    L SLNV  SRI
Sbjct: 461 GAQLLAANRSLTSLNVCWSRI 481



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 168/359 (46%), Gaps = 3/359 (0%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           +L S+DL G+ +TD G   L     L +L+ +    I   G + L     LT+L+ R  N
Sbjct: 158 TLTSLDLRGNKITDLGAQALATSRTLTTLNLDTNT-IGAKGAQALAASRTLTTLNLR-GN 215

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
            I   G +A A    L  L  E C     G+  L     L +LN+   N I D+  + L+
Sbjct: 216 KIEDAGAQALAASTTLTSLSAEGCRIGLAGVQALAASRSLTTLNLA-GNNIDDAGAQALA 274

Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
               L +L +S +K+ D+G   L   + L  L ++ C + AA   +L+   SL  LN++ 
Sbjct: 275 ASRTLTTLDLSANKIGDAGALALAASRTLASLEVDHCEIGAAGAQALATSDSLAALNISH 334

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
             + D G +  +   +L  +     +I       L    +L SL+LD+  IGD+G   L 
Sbjct: 335 NPVGDAGAQALAICRTLTSIKAKDCQIGAAGAQALAASDSLTSLDLDANQIGDDGAQALA 394

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
               L  L +    +G  G++ L+    LES+++S   I   S++ LA   +L SLN+  
Sbjct: 395 TSNTLTSLNVRYNTIGDLGVQALAANRLLESLDVSDNKIGITSVQALAENCTLTSLNVSG 454

Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
             I D G   L +   LT L++  +RI D+GA  L   ++L SL++    + +AG + +
Sbjct: 455 NNIGDAGAQLLAANRSLTSLNVCWSRIGDAGALALAANRSLTSLDVSVNRIGEAGARAL 513



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 126/463 (27%), Positives = 199/463 (42%), Gaps = 43/463 (9%)

Query: 4   RDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPG------VNDKWMDVIASQGS 57
           R IS ++ N  + +  +T +++       L  L  G YP       V +  +  + +  +
Sbjct: 48  RSISHELHN--ITNATITGLTIT--DPSGLNRLSRGDYPKLQSVRLVGNFTVQDLKALPA 103

Query: 58  SLLSVDLSGSDVTDS-GLIHLKDCSNLQSLDFNFCIQISDGGLEHL--RGLS---NLTSL 111
           S+  +DLSG + T S     +     L  L     + I D G+  +  R L+    LTSL
Sbjct: 104 SVRHIDLSGCNATSSTSATSVAGLKYLAKLPITSLV-IQDAGMTSVGARALAASDTLTSL 162

Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
             R  N IT  G +A A    L  L+L+  T    G   L     L +LN++  N I D+
Sbjct: 163 DLR-GNKITDLGAQALATSRTLTTLNLDTNTIGAKGAQALAASRTLTTLNLR-GNKIEDA 220

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
             + L+  T L SL     ++  +G+  L   + LT LNL G  +  A   +L+A  +L 
Sbjct: 221 GAQALAASTTLTSLSAEGCRIGLAGVQALAASRSLTTLNLAGNNIDDAGAQALAASRTLT 280

Query: 232 YLNL------------------------NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
            L+L                        + C++   G +  +   SL  LN+  N + D 
Sbjct: 281 TLDLSANKIGDAGALALAASRTLASLEVDHCEIGAAGAQALATSDSLAALNISHNPVGDA 340

Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
               L     L S+    C IG  G   L    +L  L+L   Q+G  G + L+    L 
Sbjct: 341 GAQALAICRTLTSIKAKDCQIGAAGAQALAASDSLTSLDLDANQIGDDGAQALATSNTLT 400

Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
           S+N+ +  I D  ++ LA    L+SL++   +I  T + AL     LT L++ G  I D+
Sbjct: 401 SLNVRYNTIGDLGVQALAANRLLESLDVSDNKIGITSVQALAENCTLTSLNVSGNNIGDA 460

Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           GA  L   ++L SL +C   + DAG   +    SLT L++S N
Sbjct: 461 GAQLLAANRSLTSLNVCWSRIGDAGALALAANRSLTSLDVSVN 503



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 3/167 (1%)

Query: 304 CLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
           C   S T   S +GL++L+ L  + S+ +   G++    R LA   +L SL+L   +ITD
Sbjct: 113 CNATSSTSATSVAGLKYLAKLP-ITSLVIQDAGMTSVGARALAASDTLTSLDLRGNKITD 171

Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
            G  AL +   LT L+L    I   GA  L   + L +L + G  + DAG + +   ++L
Sbjct: 172 LGAQALATSRTLTTLNLDTNTIGAKGAQALAASRTLTTLNLRGNKIEDAGAQALAASTTL 231

Query: 423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           T L+ ++ C +    ++ ++    L +LN++ + I  AG + L  +R
Sbjct: 232 TSLS-AEGCRIGLAGVQALAASRSLTTLNLAGNNIDDAGAQALAASR 277


>gi|254417119|ref|ZP_05030865.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
           PCC 7420]
 gi|196176097|gb|EDX71115.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
           PCC 7420]
          Length = 414

 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 94/282 (33%), Positives = 159/282 (56%), Gaps = 31/282 (10%)

Query: 171 SDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
           +D++PLSGLTNL++L +  + ++D S +  L  L+K+ L + +   V     + LS L +
Sbjct: 86  TDIRPLSGLTNLRTLYLGSNLISDVSPLVELTNLKKVDLSHNQITNV-----NPLSGLTN 140

Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
           L +L+L+R Q+++      S++ +L+ L+LG N+IT+  +  L GLTNLE LNL    I 
Sbjct: 141 LEWLDLSRNQITN--VNPLSELTNLEWLDLGHNQITN--ISPLSGLTNLEFLNLSHNQIT 196

Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
           +  ++  + L NLK + L++ Q+  + +  L+ LTNL  I+L+   I+  ++R L  L++
Sbjct: 197 NFRII--SALINLKDIALNNNQI--TDIYPLAELTNLRRISLNNNQIT--TVRPLVQLTN 250

Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409
           L+SL +   QITD  +  L+ LT L  L L   +ITD     L    NL  L +    +T
Sbjct: 251 LESLYIGNNQITD--IRPLSQLTNLRQLALNHNQITDIRP--LSQLTNLTGLALSHNQIT 306

Query: 410 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
           D  V+ +  L++L  ++L+ N          I+ +T LV+LN
Sbjct: 307 D--VRPLSQLTNLEWIHLNYNQ---------ITNITPLVNLN 337



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 139/285 (48%), Gaps = 65/285 (22%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           +DLS + +T+     L + +NL+ LD     QI++  +  L GL+NL  L+   N  IT 
Sbjct: 144 LDLSRNQITNVN--PLSELTNLEWLDLGHN-QITN--ISPLSGLTNLEFLNLSHN-QIT- 196

Query: 122 QGMKAFAGLINL--VKLDLERCTRIH--GGLVNLK----------------GLMKLESLN 161
              +  + LINL  + L+  + T I+    L NL+                 L  LESL 
Sbjct: 197 -NFRIISALINLKDIALNNNQITDIYPLAELTNLRRISLNNNQITTVRPLVQLTNLESLY 255

Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
           I   N ITD  ++PLS LTNL+ L ++ +++TD     ++ L +LT  NL G        
Sbjct: 256 IG-NNQITD--IRPLSQLTNLRQLALNHNQITD-----IRPLSQLT--NLTG-------- 297

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
                      L L+  Q++D      S++ +L+ ++L +N+IT+  +  L  L NL  L
Sbjct: 298 -----------LALSHNQITD--VRPLSQLTNLEWIHLNYNQITN--ITPLVNLNNLTGL 342

Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
           +L S  + +  +  L  L NLK ++L   Q+  + +  LSGLTNL
Sbjct: 343 DLHSNQVTN--VTPLVQLKNLKWIDLRFNQI--TDISSLSGLTNL 383



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 81/176 (46%), Gaps = 41/176 (23%)

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
           ++C   D  L + T L NL+   ++D       +R LSGLTNL ++ L    ISD S   
Sbjct: 63  NNCEQADHNLSSRTQL-NLRIQNITD-------IRPLSGLTNLRTLYLGSNLISDVS--P 112

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           L  L++LK ++L   QIT+     L+ LT L  LDL   +IT+     L    NL  L  
Sbjct: 113 LVELTNLKKVDLSHNQITNVN--PLSGLTNLEWLDLSRNQITNVNP--LSELTNLEWL-- 166

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
                 D G   I ++S L                   SGLT L  LN+S+++IT+
Sbjct: 167 ------DLGHNQITNISPL-------------------SGLTNLEFLNLSHNQITN 197


>gi|290977840|ref|XP_002671645.1| member of the leucine-rich repeat protein family [Naegleria
           gruberi]
 gi|284085215|gb|EFC38901.1| member of the leucine-rich repeat protein family [Naegleria
           gruberi]
          Length = 392

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 130/250 (52%), Gaps = 6/250 (2%)

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
           L  L +  + + D G++Y+  L KLT LN+    +++     LS +  L YL+++  ++ 
Sbjct: 109 LVDLDMKMNNIGDIGVSYISNLTKLTKLNVSYNRISSEGAKYLSKMKQLTYLDISHNKIG 168

Query: 242 DDGCEKF--SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
           +DG  KF  + I  L  LN+ +NEI    +  +  L  L SLN+    IGD+G+ +L  +
Sbjct: 169 EDGS-KFICNGIRQLTHLNIYYNEIGVRGVKFIGALKQLTSLNVGGNRIGDQGIEHLMRM 227

Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
             L  L +S+  +   G + +S +T L ++N+    I D   + ++ +  L  L++    
Sbjct: 228 HQLVDLNISNNNIRVEGAKLVSEMTQLTNLNIRKNIIGDDGAKYISEMKQLIKLDIGKNY 287

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH---I 416
           +++ G   ++ +  LT+LD+    I + GA ++   K L +L + G  +TD G+KH   +
Sbjct: 288 LSNRGAKYISEMKYLTNLDIRSNNIREEGAEFIGEMKQLTNLNLNGNYITDEGIKHLCGL 347

Query: 417 KDLSSLTLLN 426
             L SL++ N
Sbjct: 348 YQLVSLSIYN 357



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 131/271 (48%), Gaps = 6/271 (2%)

Query: 200 LKG--LQKLTLLNLEGCPVTAACLDSLSAL--GSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
           LKG  LQ + +L +E    T       SA+    L  L++    + D G    S +  L 
Sbjct: 75  LKGQLLQNIEILIVEKRNETIFDCKIFSAMMKNRLVDLDMKMNNIGDIGVSYISNLTKLT 134

Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELSDTQVGS 314
            LN+ +N I+ E   +L  +  L  L++    IG++G   +  G+  L  L +   ++G 
Sbjct: 135 KLNVSYNRISSEGAKYLSKMKQLTYLDISHNKIGEDGSKFICNGIRQLTHLNIYYNEIGV 194

Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
            G++ +  L  L S+N+    I D  +  L  +  L  LN+    I   G   ++ +T L
Sbjct: 195 RGVKFIGALKQLTSLNVGGNRIGDQGIEHLMRMHQLVDLNISNNNIRVEGAKLVSEMTQL 254

Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
           T+L++    I D GA Y+   K L  L+I    L++ G K+I ++  LT L++  N N+ 
Sbjct: 255 TNLNIRKNIIGDDGAKYISEMKQLIKLDIGKNYLSNRGAKYISEMKYLTNLDIRSN-NIR 313

Query: 435 DKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           ++  E I  +  L +LN++ + IT  G++HL
Sbjct: 314 EEGAEFIGEMKQLTNLNLNGNYITDEGIKHL 344



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 128/271 (47%), Gaps = 4/271 (1%)

Query: 125 KAFAGLIN--LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
           K F+ ++   LV LD++       G+  +  L KL  LN+ + N I+    K LS +  L
Sbjct: 99  KIFSAMMKNRLVDLDMKMNNIGDIGVSYISNLTKLTKLNVSY-NRISSEGAKYLSKMKQL 157

Query: 183 KSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
             L IS +K+ + G  ++  G+++LT LN+    +    +  + AL  L  LN+   ++ 
Sbjct: 158 TYLDISHNKIGEDGSKFICNGIRQLTHLNIYYNEIGVRGVKFIGALKQLTSLNVGGNRIG 217

Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
           D G E   ++  L  LN+  N I  E    +  +T L +LN+    IGD+G   ++ +  
Sbjct: 218 DQGIEHLMRMHQLVDLNISNNNIRVEGAKLVSEMTQLTNLNIRKNIIGDDGAKYISEMKQ 277

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
           L  L++    + + G +++S +  L ++++    I +     +  +  L +LNL+   IT
Sbjct: 278 LIKLDIGKNYLSNRGAKYISEMKYLTNLDIRSNNIREEGAEFIGEMKQLTNLNLNGNYIT 337

Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
           D G+  L  L  L  L ++   I     A L
Sbjct: 338 DEGIKHLCGLYQLVSLSIYNTGIQMEDGAKL 368



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 87/166 (52%), Gaps = 2/166 (1%)

Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
           L++    +G  G+ ++S LT L  +N+S+  IS    + L+ +  L  L++   +I + G
Sbjct: 112 LDMKMNNIGDIGVSYISNLTKLTKLNVSYNRISSEGAKYLSKMKQLTYLDISHNKIGEDG 171

Query: 365 LAAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
              +   +  LTHL+++   I   G  ++   K L SL + G  + D G++H+  +  L 
Sbjct: 172 SKFICNGIRQLTHLNIYYNEIGVRGVKFIGALKQLTSLNVGGNRIGDQGIEHLMRMHQLV 231

Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
            LN+S N N+  +  +L+S +T L +LN+  + I   G ++++  +
Sbjct: 232 DLNISNN-NIRVEGAKLVSEMTQLTNLNIRKNIIGDDGAKYISEMK 276



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 3/159 (1%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           +I D G+EHL  +  L  L+   NN I  +G K  + +  L  L++ +      G   + 
Sbjct: 215 RIGDQGIEHLMRMHQLVDLNISNNN-IRVEGAKLVSEMTQLTNLNIRKNIIGDDGAKYIS 273

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
            + +L  L+I   N +++   K +S +  L +L I  + + + G  ++  +++LT LNL 
Sbjct: 274 EMKQLIKLDI-GKNYLSNRGAKYISEMKYLTNLDIRSNNIREEGAEFIGEMKQLTNLNLN 332

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLS-DDGCEKFSK 250
           G  +T   +  L  L  L  L++    +  +DG +  S+
Sbjct: 333 GNYITDEGIKHLCGLYQLVSLSIYNTGIQMEDGAKLLSE 371



 Score = 42.7 bits (99), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 82/161 (50%), Gaps = 5/161 (3%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF-NFCIQISDGGLEHLRGLSNLTSLSFRR 115
             L S+++ G+ + D G+ HL     L  L+  N  I++   G + +  ++ LT+L+ R+
Sbjct: 204 KQLTSLNVGGNRIGDQGIEHLMRMHQLVDLNISNNNIRVE--GAKLVSEMTQLTNLNIRK 261

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
            N I   G K  + +  L+KLD+ +    + G   +  +  L +L+I+  N I +   + 
Sbjct: 262 -NIIGDDGAKYISEMKQLIKLDIGKNYLSNRGAKYISEMKYLTNLDIR-SNNIREEGAEF 319

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
           +  +  L +L ++ + +TD GI +L GL +L  L++    +
Sbjct: 320 IGEMKQLTNLNLNGNYITDEGIKHLCGLYQLVSLSIYNTGI 360


>gi|443729605|gb|ELU15470.1| hypothetical protein CAPTEDRAFT_224593 [Capitella teleta]
          Length = 858

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 44/393 (11%)

Query: 2   LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
           LP ++++ +  +L+  + L   +L  F    LQ L L  YP   ++ +  I    + L  
Sbjct: 444 LPANVAEGLLKQLMKEKLLRPKTLHPFIPSHLQTLLLDYYPYATNELLHEIRLH-NCLAH 502

Query: 62  VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           + L   S +TD GL  +     L+ L+   C Q++D  L  +R L NL  L    +  ++
Sbjct: 503 LSLKACSLITDRGLQDISSLKRLKVLNLAACTQLTDNCLPLVRELPNLQVLILE-STGVS 561

Query: 121 AQGMKAF--AGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLS 177
            +GM+      L +LV LDL + T++   + NL K   KL  LN++       S++  LS
Sbjct: 562 DRGMQELFHQPLTSLVNLDLSK-TQVTHRIFNLAKNAPKLSHLNLE------QSEVASLS 614

Query: 178 GLTNL--KSLQISCSK-VTDS---------------------GIAYLKGLQKLTLLNLEG 213
           G+  L  +SL +S +K VTDS                     G   L+ LQ L LL    
Sbjct: 615 GVKELCLQSLNLSHTKIVTDSLLCLSGCDIRALNISNTPNIEGDLGLEYLQSLKLLQHLS 674

Query: 214 CPVTAACLD---SLSALGSLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
            P   +  D     +    L  L+L N   + DDG     KI SL+ L L   +ITD  L
Sbjct: 675 LPSRLSLSDHGLQFTTAMPLVLLDLTNYLNVGDDGMRHIGKITSLRRLLLCNTKITDGGL 734

Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH--LSGLTNLE 327
           + L+GL NLE ++LD   I DEG   +     L+ L L++T + ++ L H  L+    L 
Sbjct: 735 LFLRGLVNLEEISLDRTAITDEGACVVEAFTRLQQLSLTETGISNAFLEHQSLNPCYLLS 794

Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            +NLS T ISD  +R L  L +L  LNLD  +I
Sbjct: 795 KLNLSRTAISDKGVRCLR-LPNLTLLNLDHTRI 826



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 147/329 (44%), Gaps = 65/329 (19%)

Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP 215
           L  L++K C+ ITD  ++ +S L  LK L ++ C+++TD+ +  ++ L  L +L LE   
Sbjct: 500 LAHLSLKACSLITDRGLQDISSLKRLKVLNLAACTQLTDNCLPLVRELPNLQVLILESTG 559

Query: 216 VTAACLDSL--SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
           V+   +  L    L SL  L+L++ Q++            L  LNL  +E+       L 
Sbjct: 560 VSDRGMQELFHQPLTSLVNLDLSKTQVTHRIFNLAKNAPKLSHLNLEQSEVAS-----LS 614

Query: 274 GLTNL--ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-------------------- 311
           G+  L  +SLNL    I  + L+ L+G C+++ L +S+T                     
Sbjct: 615 GVKELCLQSLNLSHTKIVTDSLLCLSG-CDIRALNISNTPNIEGDLGLEYLQSLKLLQHL 673

Query: 312 -------------------------------VGSSGLRHLSGLTNLESINLSFTGISDGS 340
                                          VG  G+RH+  +T+L  + L  T I+DG 
Sbjct: 674 SLPSRLSLSDHGLQFTTAMPLVLLDLTNYLNVGDDGMRHIGKITSLRRLLLCNTKITDGG 733

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY--LRNFKNL 398
           L  L GL +L+ ++LD   ITD G   + + T L  L L    I+++   +  L     L
Sbjct: 734 LLFLRGLVNLEEISLDRTAITDEGACVVEAFTRLQQLSLTETGISNAFLEHQSLNPCYLL 793

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
             L +    ++D GV+ ++ L +LTLLNL
Sbjct: 794 SKLNLSRTAISDKGVRCLR-LPNLTLLNL 821


>gi|449464060|ref|XP_004149747.1| PREDICTED: uncharacterized protein LOC101203036 [Cucumis sativus]
 gi|449505065|ref|XP_004162366.1| PREDICTED: uncharacterized protein LOC101225004 [Cucumis sativus]
          Length = 586

 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 109/437 (24%), Positives = 184/437 (42%), Gaps = 75/437 (17%)

Query: 43  GVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
            V+ +WM  + S    L S+++S    ++ SG+  +   + L+ L+ + C++++D G+ H
Sbjct: 73  AVDSEWMAYLGS-FRYLQSLNVSNCHRLSSSGVWTISGMTTLRELNVSRCLKVTDAGIRH 131

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL- 160
           L  +  L  L       ITA G+   + L  LV LDL         L +L+ L KL+ L 
Sbjct: 132 LLSIPTLEKLCIAET-GITAHGVTLLSSLKTLVFLDLGGLPVTDQALSSLQVLTKLQYLD 190

Query: 161 -----------------------NIKWC-----------------NCITDSDMKPLSGLT 180
                                  NI W                  NCI DS +K L    
Sbjct: 191 LWGSKISNSGSDVLQMFPKLSFLNIAWTSVTKFPNLPHLECLNMSNCIIDSTLKGLGA-- 248

Query: 181 NLKSLQISCSKVTDSGIAY--------LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
                ++   K+  SG  +           +  L  L+     +   C   LS + ++ +
Sbjct: 249 -----KVPPRKLIASGATFSNETEDLGFVAMDALYYLDFSNASLHRFCF--LSRMKAVEH 301

Query: 233 LNLNRCQLSDDGCEKFSKIGS-LKVLNLGFNEITDECLVHLKG-LTNLESLNLDSCGIGD 290
           L+L+   + D   E  + +G  LK LNL    ++   +  L G ++NLE+L+L    + D
Sbjct: 302 LDLSSTTIGDSSVELIASVGENLKYLNLSCTAVSSSGIGSLAGKVSNLETLSLSHTMVDD 361

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
             L  +  + +LKC++LS+T +   G  HLS    ++            SL +L  L  L
Sbjct: 362 VALSYMNMMPSLKCIDLSETDI--KGYIHLSAPETVKVF----------SLTELQNLDCL 409

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
           + LNL+   + D  L  L+    L+HL L     TD+  +YL    NL++L I    LT+
Sbjct: 410 EMLNLEHTHVDDESLRPLSRFRKLSHLMLRSPSFTDTVLSYLSILPNLKTLSIRDAVLTN 469

Query: 411 AGVKHIKDLSSLTLLNL 427
                 K +++L  ++L
Sbjct: 470 QAFDTFKPVATLQKIDL 486



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 177/407 (43%), Gaps = 65/407 (15%)

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMK 174
            NA+ ++ M        L  L++  C R+   G+  + G+  L  LN+  C  +TD+ ++
Sbjct: 71  ENAVDSEWMAYLGSFRYLQSLNVSNCHRLSSSGVWTISGMTTLRELNVSRCLKVTDAGIR 130

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
            L  +  L+ L I+ + +T  G+  L  L+ L  L+L G PVT   L SL  L  L YL+
Sbjct: 131 HLLSIPTLEKLCIAETGITAHGVTLLSSLKTLVFLDLGGLPVTDQALSSLQVLTKLQYLD 190

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-------G 287
           L   ++S+ G +       L  LN+ +  +T         L +LE LN+ +C       G
Sbjct: 191 LWGSKISNSGSDVLQMFPKLSFLNIAWTSVTK-----FPNLPHLECLNMSNCIIDSTLKG 245

Query: 288 IG--------------------DEGLVNLTGLCNL-------------------KCLELS 308
           +G                    D G V +  L  L                   + L+LS
Sbjct: 246 LGAKVPPRKLIASGATFSNETEDLGFVAMDALYYLDFSNASLHRFCFLSRMKAVEHLDLS 305

Query: 309 DTQVGSSGLRHLSGL-TNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLA 366
            T +G S +  ++ +  NL+ +NLS T +S   +  LAG +S+L++L+L    + D  L+
Sbjct: 306 STTIGDSSVELIASVGENLKYLNLSCTAVSSSGIGSLAGKVSNLETLSLSHTMVDDVALS 365

Query: 367 ALTSLTGLTHLDL----FGARITDSGAAYLRNF-----KNLRSLEICGGGLTDAGVKHIK 417
            +  +  L  +DL        I  S    ++ F     +NL  LE+     T    + ++
Sbjct: 366 YMNMMPSLKCIDLSETDIKGYIHLSAPETVKVFSLTELQNLDCLEMLNLEHTHVDDESLR 425

Query: 418 DLSSLTLLN--LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
            LS    L+  + ++ + TD  L  +S L  L +L++ ++ +T+   
Sbjct: 426 PLSRFRKLSHLMLRSPSFTDTVLSYLSILPNLKTLSIRDAVLTNQAF 472


>gi|343420998|emb|CCD18943.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
          Length = 1355

 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 145/436 (33%), Positives = 217/436 (49%), Gaps = 74/436 (16%)

Query: 67  SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
           +DV+   LI     SNL++LD + C  I+D  +  L  +SNL +L       IT   +  
Sbjct: 62  TDVSPLSLI-----SNLRTLDLSHCTGITD--VSPLSLISNLRTLDLSHCTGIT--DVPP 112

Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD---------------- 170
            + LI L KLDL  CT I   +  L  L +LE+LN+ +C  ITD                
Sbjct: 113 LSMLIRLEKLDLSGCTGI-TDVSPLSKLSRLETLNLMYCTGITDVSPLSKLSRLETLNLM 171

Query: 171 -----SDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
                +D+ PLS ++NL SL +S C+ +TD  +  L  L +L  L+L GC      +  L
Sbjct: 172 YCTGITDVSPLSLMSNLCSLYLSHCTGITD--VPPLSMLIRLEKLDLSGC-TGITDVSPL 228

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNL 283
           S L  L  LNL  C    D     SK+  L+ LNL +   ITD  +  L  L+ LE+LNL
Sbjct: 229 SKLSRLETLNLMYCTGITD-VSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLNL 285

Query: 284 DSC-GIGDEGLVNL-TGLCNL---KCLELSDTQ----------------VGSSGLRHLSG 322
             C GI D   ++L + LC+L    C  ++D                   G + +  LS 
Sbjct: 286 MYCTGITDVSPLSLMSNLCSLYLSHCTGITDVSPLSMLIRLEKLDLSGCTGITDVSPLSK 345

Query: 323 LTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL- 379
           L+ LE++NL + TGI+D S   L+ LS L++LNL     ITD  ++ L+ ++ L  L+L 
Sbjct: 346 LSRLETLNLMYCTGITDVS--PLSKLSRLETLNLMYCTGITD--VSPLSLMSNLCSLNLM 401

Query: 380 FGARITDSGAAYLRNFKNLRSLEIC-GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
           +   ITD   + L +F NLR+L++    G+TD  V  +  L  L  L+LS    +TD  +
Sbjct: 402 YCTGITD--VSPLSDFINLRTLDLSFYTGITD--VSPLSMLIRLENLSLSNIAGITD--V 455

Query: 439 ELISGLTGLVSLNVSN 454
             +S L+ L +L++S+
Sbjct: 456 SPLSKLSSLRTLDLSH 471



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 195/379 (51%), Gaps = 37/379 (9%)

Query: 57   SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
            S+L ++DLS  + +TD   + L   SNL SL  + C  I+D  +  L  LS L +L+   
Sbjct: 945  SNLRTLDLSHCTGITDVSPLSLM--SNLCSLYLSHCTGITD--VPPLSKLSRLETLNLMY 1000

Query: 116  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
               IT   +   + L  L  L+L  CT I   +  L  L +LE+LN+ +C  IT  D+ P
Sbjct: 1001 CTGIT--DVSPLSKLSRLETLNLMYCTGI-TDVSPLSKLSRLETLNLMYCTGIT--DVSP 1055

Query: 176  LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
            LS ++NL SL +S C+ +TD  +  L  L +L  L+L GC      +  LS L  L  LN
Sbjct: 1056 LSLMSNLCSLYLSHCTGITD--VPPLSMLIRLEKLDLSGC-TGITDVSPLSKLSRLETLN 1112

Query: 235  LNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEG 292
            L  C    D     SK+  L+ LNL +   ITD  +  L  ++NL SL L  C GI D  
Sbjct: 1113 LMYCTGITD-VSPLSKLSRLETLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGITD-- 1167

Query: 293  LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLK 351
            +  L+ L  L+ L+LS    G + +  LS L+ LE++NL + TGI+D S   L+ LS L+
Sbjct: 1168 VPPLSMLIRLEKLDLSGCT-GITDVSPLSKLSRLETLNLMYCTGITDVS--PLSKLSRLE 1224

Query: 352  SLNL-DARQITDTGLAALTSLTGLTHLDL-FGARITD-SGAAYLRNFKNLRSLEICGGGL 408
            +LNL     ITD  ++ L+    L  LDL F   ITD S  + L  F+NL    I     
Sbjct: 1225 TLNLMYCTGITD--VSPLSDFINLRTLDLSFYTGITDVSPLSMLIRFENLSLSNI----- 1277

Query: 409  TDAGVKHIKDLSSLTLLNL 427
              AG+  +  LS+L  LN+
Sbjct: 1278 --AGITDVSPLSTLIRLNV 1294



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 137/411 (33%), Positives = 201/411 (48%), Gaps = 58/411 (14%)

Query: 67   SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
            +DV+   LI     SNL++LD + C  I+D  +  L  +SNL SL       IT   +  
Sbjct: 683  TDVSPLSLI-----SNLRTLDLSHCTGITD--VSPLSLMSNLCSLYLSHCTGIT--DVSP 733

Query: 127  FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
             + + NL  L L  CT I   +  L  L +LE+LN+ +C  IT  D+ PLS ++NL++L 
Sbjct: 734  LSLMSNLCSLYLSHCTGI-TDVPPLSKLSRLETLNLMYCTGIT--DVSPLSLISNLRTLD 790

Query: 187  IS-CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
            +S C+ +TD S ++ +  L  L L +  G  +T      LS L  L  LNL  C    D 
Sbjct: 791  LSHCTGITDVSPLSLMSNLCSLYLSHCTG--ITDV--PPLSKLSRLETLNLMYCTGITD- 845

Query: 245  CEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 302
                SK+  L+ LNL +   ITD  +  L  L+ LE+LNL  C GI D   ++L    NL
Sbjct: 846  VSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLNLMYCTGITDVSPLSLMS--NL 901

Query: 303  KCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQI 360
              L LS    G + +  LS L+ LE++NL + TGI+D S   L+ +S+L++L+L     I
Sbjct: 902  CSLYLSHCT-GITDVSPLSKLSRLETLNLMYCTGITDVS--PLSLISNLRTLDLSHCTGI 958

Query: 361  TD------------------TGLAALTSLTGLTHLD----LFGARITDSGAAYLRNFKNL 398
            TD                  TG+  +  L+ L+ L+    ++   ITD   + L     L
Sbjct: 959  TDVSPLSLMSNLCSLYLSHCTGITDVPPLSKLSRLETLNLMYCTGITD--VSPLSKLSRL 1016

Query: 399  RSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTD-KTLELISGLTGL 447
             +L +    G+TD  V  +  LS L  LNL     +TD   L L+S L  L
Sbjct: 1017 ETLNLMYCTGITD--VSPLSKLSRLETLNLMYCTGITDVSPLSLMSNLCSL 1065



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 138/383 (36%), Positives = 200/383 (52%), Gaps = 33/383 (8%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
           L D  NL++LD +F   I+D  +  L  L  L +LS      IT   +   + L +L  L
Sbjct: 412 LSDFINLRTLDLSFYTGITD--VSPLSMLIRLENLSLSNIAGIT--DVSPLSKLSSLRTL 467

Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDS 195
           DL  CT I   + +L  L +LE+LN+ +C  IT  D+ PLS ++NL SL +S C+ +TD 
Sbjct: 468 DLSHCTGI-TDVSSLSKLSRLETLNLMYCTGIT--DVSPLSLMSNLCSLYLSHCTGITD- 523

Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
            +  L  L +L  L+L GC      +  LS L  L  LNL  C    D     SK+  L+
Sbjct: 524 -VPPLSMLIRLEKLDLSGC-TGITDVSPLSKLSRLETLNLMYCTGITD-VSPLSKLSRLE 580

Query: 256 VLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVG 313
            LNL +   ITD  +  L  ++NL SL L  C GI D  +  L+ L  L+ L+LS    G
Sbjct: 581 TLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGITD--VPPLSMLIRLEKLDLSGCT-G 635

Query: 314 SSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSL 371
            + +  LS L+ LE++NL + TGI+D S   L+ LS L++LNL     ITD  ++ L+ +
Sbjct: 636 ITDVSPLSKLSRLETLNLMYCTGITDVS--PLSKLSRLETLNLMYCTGITD--VSPLSLI 691

Query: 372 TGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQ 429
           + L  LDL     ITD   + L    NL SL +    G+TD  V  +  +S+L  L LS 
Sbjct: 692 SNLRTLDLSHCTGITD--VSPLSLMSNLCSLYLSHCTGITD--VSPLSLMSNLCSLYLSH 747

Query: 430 NCNLTDKTLELISGLTGLVSLNV 452
              +TD  +  +S L+ L +LN+
Sbjct: 748 CTGITD--VPPLSKLSRLETLNL 768



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 142/441 (32%), Positives = 199/441 (45%), Gaps = 95/441 (21%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           S L++L+  +C  I+D  +  L  +SNL SL       IT   +   + LI L KLDL  
Sbjct: 278 SRLETLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGIT--DVSPLSMLIRLEKLDLSG 333

Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITD---------------------SDMKPLSGL 179
           CT I   +  L  L +LE+LN+ +C  ITD                     +D+ PLS +
Sbjct: 334 CTGI-TDVSPLSKLSRLETLNLMYCTGITDVSPLSKLSRLETLNLMYCTGITDVSPLSLM 392

Query: 180 TNLKSLQ-ISCSKVTD------------------------SGIAYLKGLQKLTLLNLEGC 214
           +NL SL  + C+ +TD                        S ++ L  L+ L+L N+ G 
Sbjct: 393 SNLCSLNLMYCTGITDVSPLSDFINLRTLDLSFYTGITDVSPLSMLIRLENLSLSNIAG- 451

Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK 273
            +T      LS L SL  L+L+ C    D     SK+  L+ LNL +   ITD  +  L 
Sbjct: 452 -ITDV--SPLSKLSSLRTLDLSHCTGITD-VSSLSKLSRLETLNLMYCTGITD--VSPLS 505

Query: 274 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
            ++NL SL L  C GI D  +  L+ L  L+ L+LS    G + +  LS L+ LE++NL 
Sbjct: 506 LMSNLCSLYLSHCTGITD--VPPLSMLIRLEKLDLSGCT-GITDVSPLSKLSRLETLNLM 562

Query: 333 F-TGISDGSLRKLAGLSSLKSLNL-DARQITD---------------------TGLAALT 369
           + TGI+D S   L+ LS L++LNL     ITD                     T +  L+
Sbjct: 563 YCTGITDVS--PLSKLSRLETLNLMYCTGITDVSPLSLMSNLCSLYLSHCTGITDVPPLS 620

Query: 370 SLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
            L  L  LDL G   ITD   + L     L +L +    G+TD  V  +  LS L  LNL
Sbjct: 621 MLIRLEKLDLSGCTGITD--VSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLNL 676

Query: 428 SQNCNLTD-KTLELISGLTGL 447
                +TD   L LIS L  L
Sbjct: 677 MYCTGITDVSPLSLISNLRTL 697



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 114/350 (32%), Positives = 172/350 (49%), Gaps = 57/350 (16%)

Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD--------------------- 170
           NL  L L  CT I   +  L  L +LE+LN+ +C  ITD                     
Sbjct: 3   NLCSLYLSHCTGI-TDVPPLSKLSRLETLNLMYCTGITDVSPLSKLSRLETLNLMYCTGI 61

Query: 171 SDMKPLSGLTNLKSLQIS-CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
           +D+ PLS ++NL++L +S C+ +TD S ++ +  L+ L L +  G  +T      LS L 
Sbjct: 62  TDVSPLSLISNLRTLDLSHCTGITDVSPLSLISNLRTLDLSHCTG--ITDV--PPLSMLI 117

Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC- 286
            L  L+L+ C    D     SK+  L+ LNL +   ITD  +  L  L+ LE+LNL  C 
Sbjct: 118 RLEKLDLSGCTGITD-VSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLNLMYCT 174

Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLA 345
           GI D   ++L    NL  L LS    G + +  LS L  LE ++LS  TGI+D S   L+
Sbjct: 175 GITDVSPLSLMS--NLCSLYLSHCT-GITDVPPLSMLIRLEKLDLSGCTGITDVS--PLS 229

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLD----LFGARITDSGAAYLRNFKNLRSL 401
            LS L++LNL    +  TG+  ++ L+ L+ L+    ++   ITD   + L     L +L
Sbjct: 230 KLSRLETLNL----MYCTGITDVSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETL 283

Query: 402 EICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
            +    G+TD  V  +  +S+L  L LS    +TD     +S L+ L+ L
Sbjct: 284 NLMYCTGITD--VSPLSLMSNLCSLYLSHCTGITD-----VSPLSMLIRL 326



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 8/119 (6%)

Query: 77   LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
            L D  NL++LD +F   I+D  +  L  L    +LS      IT   +   + LI L  L
Sbjct: 1240 LSDFINLRTLDLSFYTGITD--VSPLSMLIRFENLSLSNIAGIT--DVSPLSTLIRLNVL 1295

Query: 137  DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD 194
             L  CT I   +  L  L +LE+LN+ +C  IT  D+ PLS ++NL++L +S C+ +TD
Sbjct: 1296 YLSGCTGI-TDVSPLSKLSRLETLNLMYCTGIT--DVSPLSLISNLRTLDLSHCTGITD 1351


>gi|290972583|ref|XP_002669031.1| predicted protein [Naegleria gruberi]
 gi|284082572|gb|EFC36287.1| predicted protein [Naegleria gruberi]
          Length = 369

 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 167/357 (46%), Gaps = 8/357 (2%)

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
           +E +  +  LT L     N I    M+    +  L +LD+ERC     G+  L  + +L 
Sbjct: 18  IEAISEMRQLTKLGI---NGIQDNDMRQIGMMSQLTELDIERCDISGEGIKFLIVMPQLT 74

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
           SLN  + N +   D K +S ++ L  L I+ +++   G  Y+  L +LT L++    + +
Sbjct: 75  SLNGGY-NYLQCGDAKLISEMSKLTKLDINTNEIGTEGAKYISTLNQLTELDIGNNNILS 133

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
                +  L +L  LN+ R  + D+G    S++  L  L++GFN    E +  +  L +L
Sbjct: 134 EGAKFIRNLKNLVKLNVERNNIGDEGANYISEMKQLTALDIGFNMFGFEGIKAISQLNHL 193

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT--QVGSSGLRHL-SGLTNLESINLSFTG 335
             L++    I   G+  +T   NL  L L +      +  L  L S +  L ++++    
Sbjct: 194 IELSIQGNEITINGVKLITEKKNLTSLNLGNIFYDTKTPELSQLVSQMHQLTTLDIENNN 253

Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
           I       LA + +LK LN+    I   GL+ +T LT LT L++ G +I D GA  + + 
Sbjct: 254 IGPEVANLLAEMKNLKHLNIAFNNIEKEGLSHITQLTQLTSLNVCGNQIDDEGAKIVSSM 313

Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
           K L  L I    L + G + I ++  LT L +S N  + +K +E+I G   L  + +
Sbjct: 314 KQLLKLNIEENFLNEGGCETIIEMPQLTQLYISSN-RIGEKQVEMICGKKNLRDIRI 369



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 145/321 (45%), Gaps = 32/321 (9%)

Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA--------- 219
           T S ++ +S +  L  L I+   + D+ +  +  + +LT L++E C ++           
Sbjct: 14  TSSSIEAISEMRQLTKLGING--IQDNDMRQIGMMSQLTELDIERCDISGEGIKFLIVMP 71

Query: 220 -------------CLDS--LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
                        C D+  +S +  L  L++N  ++  +G +  S +  L  L++G N I
Sbjct: 72  QLTSLNGGYNYLQCGDAKLISEMSKLTKLDINTNEIGTEGAKYISTLNQLTELDIGNNNI 131

Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
             E    ++ L NL  LN++   IGDEG   ++ +  L  L++     G  G++ +S L 
Sbjct: 132 LSEGAKFIRNLKNLVKLNVERNNIGDEGANYISEMKQLTALDIGFNMFGFEGIKAISQLN 191

Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG----LTHLDLF 380
           +L  +++    I+   ++ +    +L SLNL      DT    L+ L      LT LD+ 
Sbjct: 192 HLIELSIQGNEITINGVKLITEKKNLTSLNL-GNIFYDTKTPELSQLVSQMHQLTTLDIE 250

Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
              I    A  L   KNL+ L I    +   G+ HI  L+ LT LN+  N  + D+  ++
Sbjct: 251 NNNIGPEVANLLAEMKNLKHLNIAFNNIEKEGLSHITQLTQLTSLNVCGN-QIDDEGAKI 309

Query: 441 ISGLTGLVSLNVSNSRITSAG 461
           +S +  L+ LN+  + +   G
Sbjct: 310 VSSMKQLLKLNIEENFLNEGG 330



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 130/279 (46%), Gaps = 12/279 (4%)

Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
           T S I  +  +++LT L + G  +    +  +  +  L  L++ RC +S +G +    + 
Sbjct: 14  TSSSIEAISEMRQLTKLGING--IQDNDMRQIGMMSQLTELDIERCDISGEGIKFLIVMP 71

Query: 253 SLKVLNLGFNEIT--DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
            L  LN G+N +   D  L+    ++ L  L++++  IG EG   ++ L  L  L++ + 
Sbjct: 72  QLTSLNGGYNYLQCGDAKLI--SEMSKLTKLDINTNEIGTEGAKYISTLNQLTELDIGNN 129

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
            + S G + +  L NL  +N+    I D     ++ +  L +L++        G+ A++ 
Sbjct: 130 NILSEGAKFIRNLKNLVKLNVERNNIGDEGANYISEMKQLTALDIGFNMFGFEGIKAISQ 189

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS----LTLLN 426
           L  L  L + G  IT +G   +   KNL SL + G    D     +  L S    LT L+
Sbjct: 190 LNHLIELSIQGNEITINGVKLITEKKNLTSLNL-GNIFYDTKTPELSQLVSQMHQLTTLD 248

Query: 427 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           + +N N+  +   L++ +  L  LN++ + I   GL H+
Sbjct: 249 I-ENNNIGPEVANLLAEMKNLKHLNIAFNNIEKEGLSHI 286


>gi|218196286|gb|EEC78713.1| hypothetical protein OsI_18882 [Oryza sativa Indica Group]
          Length = 601

 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 120/440 (27%), Positives = 198/440 (45%), Gaps = 68/440 (15%)

Query: 25  LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNL 83
           LE F+  +++++ L  +  V+ +W+  + +    L  + L+   +V  S +  L   S L
Sbjct: 65  LEVFQH-SVEEIDLSGHIAVDAEWLAYLGA-FRYLRVLKLADCKNVNSSAVWALSGMSTL 122

Query: 84  QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
           + LD + C +ISD G++H+  + +L  L   +   +T  G+ A + LINL  LDL     
Sbjct: 123 KELDLSRCSKISDAGIKHIASIESLEKLHVSQT-GLTDNGVMAISSLINLRLLDLGGVRF 181

Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
               L +L+ L +LE L+I W + IT+     L   T+L  L IS ++VT      L  L
Sbjct: 182 TDKALRSLQVLTQLEHLDI-WGSEITNEGASVLIAFTSLSFLNISWTRVT-----CLPIL 235

Query: 204 QKLTLLNLEGCPVTAAC-------------LDSLSALG------------SLFYLNLNRC 238
             L  LN+  C + + C             + S ++ G            SL YL+++ C
Sbjct: 236 LTLRCLNMSNCTIHSICNGEFQVLIHLEKLVISAASFGNIDEVFSSILPSSLTYLDMSSC 295

Query: 239 QLSD----------------------DGCEKFSKIG-SLKVLNLGFNEITDECLVHLKG- 274
             S+                      D  E  + IG +L  L+L  +E+T + L  L G 
Sbjct: 296 SSSNLYFLGNMRNLEHLDLSYSRIISDAIEYIANIGMNLMFLSLSNSEVTSQALCVLAGT 355

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT---------QVGSSGLRHLSGLTN 325
           + +L +L+L    I D  L+ ++ + +L+ L LS T          V    L  L  L  
Sbjct: 356 VPSLTTLSLAHTKIDDSALLYISMMPSLRILNLSRTCIKGFMMENSVKVLSLSALEELKY 415

Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           LES+NL+ T + D  +  LA   +LK L L +  ++D  L AL+S + L HL   G  ++
Sbjct: 416 LESLNLNNTQLMDDVIPPLASFRALKYLFLKSDFLSDPALHALSSASNLIHLGFCGNILS 475

Query: 386 DSGAAYLRNFKNLRSLEICG 405
            +G         LR L++ G
Sbjct: 476 TTGLRKFVPPATLRMLDLSG 495



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 175/384 (45%), Gaps = 37/384 (9%)

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPL 176
           A+ A+ +        L  L L  C  ++   V  L G+  L+ L++  C+ I+D+ +K +
Sbjct: 82  AVDAEWLAYLGAFRYLRVLKLADCKNVNSSAVWALSGMSTLKELDLSRCSKISDAGIKHI 141

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           + + +L+ L +S + +TD+G+  +  L  L LL+L G   T   L SL  L  L +L++ 
Sbjct: 142 ASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRFTDKALRSLQVLTQLEHLDIW 201

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEIT-------------DECLVH------LKGLTN 277
             +++++G        SL  LN+ +  +T               C +H       + L +
Sbjct: 202 GSEITNEGASVLIAFTSLSFLNISWTRVTCLPILLTLRCLNMSNCTIHSICNGEFQVLIH 261

Query: 278 LESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
           LE L + +   G  DE   ++    +L  L++S     SS L  L  + NLE ++LS++ 
Sbjct: 262 LEKLVISAASFGNIDEVFSSILP-SSLTYLDMSS--CSSSNLYFLGNMRNLEHLDLSYSR 318

Query: 336 ISDGSLRKLAGLS-SLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLR 393
           I   ++  +A +  +L  L+L   ++T   L  L  ++  LT L L   +I DS   Y+ 
Sbjct: 319 IISDAIEYIANIGMNLMFLSLSNSEVTSQALCVLAGTVPSLTTLSLAHTKIDDSALLYIS 378

Query: 394 NFKNLRSLEI----CGGGLTDAGVK-----HIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
              +LR L +      G + +  VK      +++L  L  LNL+ N  L D  +  ++  
Sbjct: 379 MMPSLRILNLSRTCIKGFMMENSVKVLSLSALEELKYLESLNLN-NTQLMDDVIPPLASF 437

Query: 445 TGLVSLNVSNSRITSAGLRHLNHA 468
             L  L + +  ++   L  L+ A
Sbjct: 438 RALKYLFLKSDFLSDPALHALSSA 461



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 85/152 (55%), Gaps = 2/152 (1%)

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGL 317
           G   +  E L +L     L  L L  C  +    +  L+G+  LK L+LS  +++  +G+
Sbjct: 79  GHIAVDAEWLAYLGAFRYLRVLKLADCKNVNSSAVWALSGMSTLKELDLSRCSKISDAGI 138

Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
           +H++ + +LE +++S TG++D  +  ++ L +L+ L+L   + TD  L +L  LT L HL
Sbjct: 139 KHIASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRFTDKALRSLQVLTQLEHL 198

Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409
           D++G+ IT+ GA+ L  F +L  L I    +T
Sbjct: 199 DIWGSEITNEGASVLIAFTSLSFLNISWTRVT 230


>gi|290982059|ref|XP_002673748.1| predicted protein [Naegleria gruberi]
 gi|284087334|gb|EFC41004.1| predicted protein [Naegleria gruberi]
          Length = 370

 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 151/332 (45%), Gaps = 3/332 (0%)

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
           L+ L  +  L  L+   NN I   G+K    L  L  L++  C  I   L +L  L  L 
Sbjct: 24  LQVLDSMKELKKLNLEYNN-IDPNGIKYLGSLKQLTDLNV-SCCYIGLNLSHLILLKALT 81

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
            LNI   N I     K +  +  L  L I  + +   G  Y+ GL++LT LN+    +  
Sbjct: 82  HLNI-TSNNIRAEGAKYIGEMKQLTKLSIGSNDIGPEGAKYISGLEQLTYLNIRSNDIKK 140

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
                +S +  L YLN+    + D G    S++  L  L++G+N+I +E   ++  L N+
Sbjct: 141 DGAKHISEMKQLTYLNVVGNHICDGGARFISEMKQLSNLSVGYNDIGEEGAKYISELMNV 200

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
             L++    I ++G   +  +  L  L +    +G  G +++S L  L  +++S   I D
Sbjct: 201 SILDIGGNSINEKGAKFIGEMKQLTDLRIYCCNIGVEGTQYISSLNQLTHLSISTNNIGD 260

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
              + +  +  L  L++   +I   G  ++  L  L +L + G  I D+GA ++     L
Sbjct: 261 EGAKYIGQMKQLTDLSIRENKIGIEGAKSIGQLKNLLNLYISGNEIGDNGAQFISEMNQL 320

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
             L+I    +T  G+K+I ++  LT L +  N
Sbjct: 321 TILDISSINITPIGIKYISNMEYLTDLRIIDN 352



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 148/318 (46%), Gaps = 26/318 (8%)

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
           +++ L  +  LK L +  + +  +GI YL  L++LT LN+  C +    L  L  L +L 
Sbjct: 23  NLQVLDSMKELKKLNLEYNNIDPNGIKYLGSLKQLTDLNVSCCYI-GLNLSHLILLKALT 81

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
           +LN+    +  +G +   ++  L  L++G N+I  E   ++ GL  L  LN+ S  I  +
Sbjct: 82  HLNITSNNIRAEGAKYIGEMKQLTKLSIGSNDIGPEGAKYISGLEQLTYLNIRSNDIKKD 141

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
           G  +++ +  L  L +    +   G R +S +  L ++++ +  I +   + ++ L ++ 
Sbjct: 142 GAKHISEMKQLTYLNVVGNHICDGGARFISEMKQLSNLSVGYNDIGEEGAKYISELMNVS 201

Query: 352 SLNL--------------DARQITD----------TGLAALTSLTGLTHLDLFGARITDS 387
            L++              + +Q+TD           G   ++SL  LTHL +    I D 
Sbjct: 202 ILDIGGNSINEKGAKFIGEMKQLTDLRIYCCNIGVEGTQYISSLNQLTHLSISTNNIGDE 261

Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
           GA Y+   K L  L I    +   G K I  L +L  L +S N  + D   + IS +  L
Sbjct: 262 GAKYIGQMKQLTDLSIRENKIGIEGAKSIGQLKNLLNLYISGN-EIGDNGAQFISEMNQL 320

Query: 448 VSLNVSNSRITSAGLRHL 465
             L++S+  IT  G++++
Sbjct: 321 TILDISSINITPIGIKYI 338



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 154/359 (42%), Gaps = 30/359 (8%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRRN 116
            L  ++L  +++  +G+ +L     L  L+ + C I ++   L HL  L  LT L+   N
Sbjct: 32  ELKKLNLEYNNIDPNGIKYLGSLKQLTDLNVSCCYIGLN---LSHLILLKALTHLNITSN 88

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N I A+G K    +  L KL +                           N I     K +
Sbjct: 89  N-IRAEGAKYIGEMKQLTKLSI-------------------------GSNDIGPEGAKYI 122

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           SGL  L  L I  + +   G  ++  +++LT LN+ G  +       +S +  L  L++ 
Sbjct: 123 SGLEQLTYLNIRSNDIKKDGAKHISEMKQLTYLNVVGNHICDGGARFISEMKQLSNLSVG 182

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
              + ++G +  S++ ++ +L++G N I ++    +  +  L  L +  C IG EG   +
Sbjct: 183 YNDIGEEGAKYISELMNVSILDIGGNSINEKGAKFIGEMKQLTDLRIYCCNIGVEGTQYI 242

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
           + L  L  L +S   +G  G +++  +  L  +++    I     + +  L +L +L + 
Sbjct: 243 SSLNQLTHLSISTNNIGDEGAKYIGQMKQLTDLSIRENKIGIEGAKSIGQLKNLLNLYIS 302

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
             +I D G   ++ +  LT LD+    IT  G  Y+ N + L  L I    +   G K+
Sbjct: 303 GNEIGDNGAQFISEMNQLTILDISSINITPIGIKYISNMEYLTDLRIIDNNIDSMGAKY 361



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 135/291 (46%), Gaps = 2/291 (0%)

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           L N+ +L +  +      +  L  +++L  LNLE   +    +  L +L  L  LN++ C
Sbjct: 6   LENIANLAVRMNGEIGFNLQVLDSMKELKKLNLEYNNIDPNGIKYLGSLKQLTDLNVSCC 65

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
            +  +       + +L  LN+  N I  E   ++  +  L  L++ S  IG EG   ++G
Sbjct: 66  YIGLN-LSHLILLKALTHLNITSNNIRAEGAKYIGEMKQLTKLSIGSNDIGPEGAKYISG 124

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
           L  L  L +    +   G +H+S +  L  +N+    I DG  R ++ +  L +L++   
Sbjct: 125 LEQLTYLNIRSNDIKKDGAKHISEMKQLTYLNVVGNHICDGGARFISEMKQLSNLSVGYN 184

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
            I + G   ++ L  ++ LD+ G  I + GA ++   K L  L I    +   G ++I  
Sbjct: 185 DIGEEGAKYISELMNVSILDIGGNSINEKGAKFIGEMKQLTDLRIYCCNIGVEGTQYISS 244

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           L+ LT L++S N N+ D+  + I  +  L  L++  ++I   G + +   +
Sbjct: 245 LNQLTHLSISTN-NIGDEGAKYIGQMKQLTDLSIRENKIGIEGAKSIGQLK 294


>gi|374586212|ref|ZP_09659304.1| hypothetical protein Lepil_2392 [Leptonema illini DSM 21528]
 gi|373875073|gb|EHQ07067.1| hypothetical protein Lepil_2392 [Leptonema illini DSM 21528]
          Length = 346

 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 148/312 (47%), Gaps = 9/312 (2%)

Query: 79  DCSNLQSLD-FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
           D + +++++ + +  Q+    +  +R + +  +L        T   M     +  L KL 
Sbjct: 26  DWAKVRAIEQYVYTGQLKGVTMAEIRAVKDWYAL------GATDAEMPRLLSMQRLEKLS 79

Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
           L         LV+L G   L+ LN+     ITD+ +K +  +  L+ L ++ +K+TD+G+
Sbjct: 80  LGGQNYTDAALVHLAGFKHLKELNLS-TGPITDAGLKSIGQIKTLEKLDLAETKITDAGV 138

Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
           A L GL +L  L+L    VT AC+ S+  + SL  L LN   ++D G E+  +   L+ L
Sbjct: 139 ADLVGLSRLKDLSLIDTAVTDACMTSIMQMKSLEILQLNMTGITDRGVEQLIQHQRLRKL 198

Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
            LG   +TDE + ++  + NL+        I  +GLV L    NL+ L L+DT V    L
Sbjct: 199 ILGGTAVTDESVGYVAQIANLDEAVFSRTKIRGKGLVRLRQAKNLRRLWLADTSVDDDDL 258

Query: 318 RH-LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
              L     L+ ++L    I+  ++  +A  + +K L +   +I +  L  L   T L  
Sbjct: 259 IELLQPPMELDMLHLGHLKITGKTMEAIARCNCVKDLYVGYTKIGNDDLLKLIPATRLKS 318

Query: 377 LDLFGARITDSG 388
           + +   R+TD G
Sbjct: 319 ITVTKTRVTDDG 330



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 106/218 (48%)

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           +D    +   +  L+ L+LG    TD  LVHL G  +L+ LNL +  I D GL ++  + 
Sbjct: 62  TDAEMPRLLSMQRLEKLSLGGQNYTDAALVHLAGFKHLKELNLSTGPITDAGLKSIGQIK 121

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            L+ L+L++T++  +G+  L GL+ L+ ++L  T ++D  +  +  + SL+ L L+   I
Sbjct: 122 TLEKLDLAETKITDAGVADLVGLSRLKDLSLIDTAVTDACMTSIMQMKSLEILQLNMTGI 181

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD G+  L     L  L L G  +TD    Y+    NL         +   G+  ++   
Sbjct: 182 TDRGVEQLIQHQRLRKLILGGTAVTDESVGYVAQIANLDEAVFSRTKIRGKGLVRLRQAK 241

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
           +L  L L+      D  +EL+     L  L++ + +IT
Sbjct: 242 NLRRLWLADTSVDDDDLIELLQPPMELDMLHLGHLKIT 279



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 118/278 (42%), Gaps = 26/278 (9%)

Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
           T A +  L ++  L  L+L     +D      +    LK LNL    ITD  L  +  + 
Sbjct: 62  TDAEMPRLLSMQRLEKLSLGGQNYTDAALVHLAGFKHLKELNLSTGPITDAGLKSIGQIK 121

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
            LE L+L    I D G+ +L GL  LK L L DT V  + +  +  + +LE + L+ TGI
Sbjct: 122 TLEKLDLAETKITDAGVADLVGLSRLKDLSLIDTAVTDACMTSIMQMKSLEILQLNMTGI 181

Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
           +D  + +L     L+ L L    +TD  +  +  +  L        +I   G   LR  K
Sbjct: 182 TDRGVEQLIQHQRLRKLILGGTAVTDESVGYVAQIANLDEAVFSRTKIRGKGLVRLRQAK 241

Query: 397 NLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTLELIS------------- 442
           NLR L +    + D   ++ ++    L +L+L  +  +T KT+E I+             
Sbjct: 242 NLRRLWLADTSVDDDDLIELLQPPMELDMLHLG-HLKITGKTMEAIARCNCVKDLYVGYT 300

Query: 443 -----------GLTGLVSLNVSNSRITSAGLRHLNHAR 469
                        T L S+ V+ +R+T  G    + AR
Sbjct: 301 KIGNDDLLKLIPATRLKSITVTKTRVTDDGYIPFHKAR 338



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 97/202 (48%), Gaps = 4/202 (1%)

Query: 271 HLKGLTNLESLNLD---SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
            LKG+T  E   +    + G  D  +  L  +  L+ L L       + L HL+G  +L+
Sbjct: 41  QLKGVTMAEIRAVKDWYALGATDAEMPRLLSMQRLEKLSLGGQNYTDAALVHLAGFKHLK 100

Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
            +NLS   I+D  L+ +  + +L+ L+L   +ITD G+A L  L+ L  L L    +TD+
Sbjct: 101 ELNLSTGPITDAGLKSIGQIKTLEKLDLAETKITDAGVADLVGLSRLKDLSLIDTAVTDA 160

Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
               +   K+L  L++   G+TD GV+ +     L  L L     +TD+++  ++ +  L
Sbjct: 161 CMTSIMQMKSLEILQLNMTGITDRGVEQLIQHQRLRKLILG-GTAVTDESVGYVAQIANL 219

Query: 448 VSLNVSNSRITSAGLRHLNHAR 469
                S ++I   GL  L  A+
Sbjct: 220 DEAVFSRTKIRGKGLVRLRQAK 241



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 157/340 (46%), Gaps = 39/340 (11%)

Query: 3   PRDISQ-QIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYP-GVNDKWMDVIASQGSSLL 60
           P D ++ +   + VY+  L  V++   R  A++D     Y  G  D  M  + S    L 
Sbjct: 24  PADWAKVRAIEQYVYTGQLKGVTMAEIR--AVKDW----YALGATDAEMPRLLSM-QRLE 76

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
            + L G + TD+ L+HL                    G +HL+ L NL++        IT
Sbjct: 77  KLSLGGQNYTDAALVHL-------------------AGFKHLKEL-NLST------GPIT 110

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
             G+K+   +  L KLDL        G+ +L GL +L+ L++     +TD+ M  +  + 
Sbjct: 111 DAGLKSIGQIKTLEKLDLAETKITDAGVADLVGLSRLKDLSL-IDTAVTDACMTSIMQMK 169

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           +L+ LQ++ + +TD G+  L   Q+L  L L G  VT   +  ++ + +L     +R ++
Sbjct: 170 SLEILQLNMTGITDRGVEQLIQHQRLRKLILGGTAVTDESVGYVAQIANLDEAVFSRTKI 229

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVH-LKGLTNLESLNLDSCGIGDEGLVNLTGL 299
              G  +  +  +L+ L L    + D+ L+  L+    L+ L+L    I  + +  +   
Sbjct: 230 RGKGLVRLRQAKNLRRLWLADTSVDDDDLIELLQPPMELDMLHLGHLKITGKTMEAI-AR 288

Query: 300 CN-LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
           CN +K L +  T++G+  L  L   T L+SI ++ T ++D
Sbjct: 289 CNCVKDLYVGYTKIGNDDLLKLIPATRLKSITVTKTRVTD 328


>gi|428317664|ref|YP_007115546.1| leucine-rich repeat-containing protein [Oscillatoria nigro-viridis
           PCC 7112]
 gi|428241344|gb|AFZ07130.1| leucine-rich repeat-containing protein [Oscillatoria nigro-viridis
           PCC 7112]
          Length = 782

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 126/362 (34%), Positives = 185/362 (51%), Gaps = 57/362 (15%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
           R ++N TSLS                 L NL  L L+  ++I   + +L  L  L  LN+
Sbjct: 63  RSITNFTSLS----------------ALTNLTALYLQ-GSQI-NDIASLSALTNLTYLNL 104

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
           +  N ITD  + PLS LTNL  L ++ +++TD  I  L GL  LT+L+LE   +T   + 
Sbjct: 105 E-SNQITD--ITPLSALTNLTYLNLNHNQITD--ITPLSGLTNLTILSLEYNQITD--IT 157

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIG------SLKVLNLGFNEITDECLVHLKGLT 276
            LSAL +L  L L        GC + + I       +L  ++L  NEITD  +  L  LT
Sbjct: 158 GLSALTNLTDLCL--------GCNQITDITGLLGLTNLTRVSLNNNEITD--VTPLSALT 207

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
           NL  L +++  I D  +  L+ L NL  L +SD   G   +  LS LTNL  + +S  GI
Sbjct: 208 NLTKLGIENQEITD--ISPLSALTNLTELSISD---GIIDISPLSALTNLTELFIS-EGI 261

Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
           +D  +  L+ L++L  L++     T T ++ L++LT LT L     +ITD  A  L    
Sbjct: 262 TD--ISPLSALTNLTKLSIIYND-TITEISPLSALTNLTSLYFLYTQITDITA--LSALT 316

Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
           NL  L +    +TD  +  +  L++LT LNLS N  +TD  +  +S LT L  LN+SN++
Sbjct: 317 NLTYLYLSDNQITD--ITALSALTNLTYLNLSNN-QITD--IAALSALTNLTYLNLSNNQ 371

Query: 457 IT 458
           IT
Sbjct: 372 IT 373



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 118/335 (35%), Positives = 167/335 (49%), Gaps = 40/335 (11%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++L  + +TD  +  L   +NL  L+ N   QI+D  +  L GL+NLT LS   N
Sbjct: 97  TNLTYLNLESNQITD--ITPLSALTNLTYLNLNHN-QITD--ITPLSGLTNLTILSLEYN 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLESLNIKWCNCITDSDMK 174
                 G+ A   L +L  L   + T I G  GL NL  +    SLN    N ITD  + 
Sbjct: 152 QITDITGLSALTNLTDLC-LGCNQITDITGLLGLTNLTRV----SLN---NNEITD--VT 201

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           PLS LTNL  L I   ++TD  I+ L  L  LT L++    +  + L +L+ L  LF   
Sbjct: 202 PLSALTNLTKLGIENQEITD--ISPLSALTNLTELSISDGIIDISPLSALTNLTELFI-- 257

Query: 235 LNRCQLSDDGCEKFSKIGS---LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
                   +G    S + +   L  L++ +N+   E +  L  LTNL SL      I D 
Sbjct: 258 -------SEGITDISPLSALTNLTKLSIIYNDTITE-ISPLSALTNLTSLYFLYTQITD- 308

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
            +  L+ L NL  L LSD Q+  + +  LS LTNL  +NLS   I+D  +  L+ L++L 
Sbjct: 309 -ITALSALTNLTYLYLSDNQI--TDITALSALTNLTYLNLSNNQITD--IAALSALTNLT 363

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
            LNL   QITD  + AL++LT LT L L   +ITD
Sbjct: 364 YLNLSNNQITD--ITALSALTNLTELHLETNQITD 396


>gi|215769345|dbj|BAH01574.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 483

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 110/381 (28%), Positives = 172/381 (45%), Gaps = 65/381 (17%)

Query: 83  LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
           L+ LD + C +ISD G++H+  + +L  L   +   +T  G+ A + LINL  LDL    
Sbjct: 4   LKELDLSRCSKISDAGIKHIASIESLEKLHVSQT-GLTDNGVMAISSLINLRLLDLGGVR 62

Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
                L +L+ L +LE L+I W + IT+     L   T+L  L IS ++VT      L  
Sbjct: 63  FTDKALRSLQVLTQLEHLDI-WGSEITNEGASVLIAFTSLSFLNISWTRVT-----CLPI 116

Query: 203 LQKLTLLNLEGCPVTAAC-------------LDSLSALG------------SLFYLNLNR 237
           L  L  LN+  C + + C             + S ++ G            SL YL+++ 
Sbjct: 117 LPTLRCLNMSNCTIHSICNGEFQVLIHLEKLIISAASFGNIDEVFSSILPSSLTYLDMSS 176

Query: 238 CQLSD----------------------DGCEKFSKIG-SLKVLNLGFNEITDECLVHLKG 274
           C  S+                      D  E  + IG +LK L+L  +E+T + L  L G
Sbjct: 177 CSSSNLYFLGNMRNLEHLDLSYSRIISDAIEYIANIGMNLKFLSLSNSEVTSQALCVLAG 236

Query: 275 -LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT---------QVGSSGLRHLSGLT 324
            + +L +L+L    I D  L+ ++ + +L+ L LS T          V    L  L  L 
Sbjct: 237 TVPSLTTLSLAHTKIDDSALLYISMMPSLRILNLSRTCIKGFMMENSVKVLSLSALEELK 296

Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
            LES+NL+ T + D  +  LA L +LK L L +  ++D  L AL+S + L HL   G  +
Sbjct: 297 YLESLNLNNTQLMDDVIPPLASLRALKYLFLKSDFLSDPALHALSSASNLIHLGFCGNIL 356

Query: 385 TDSGAAYLRNFKNLRSLEICG 405
           + +G         LR L++ G
Sbjct: 357 STTGLRKFVPPATLRMLDLSG 377



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 162/344 (47%), Gaps = 36/344 (10%)

Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
           L+ L++  C+ I+D+ +K ++ + +L+ L +S + +TD+G+  +  L  L LL+L G   
Sbjct: 4   LKELDLSRCSKISDAGIKHIASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRF 63

Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT----------- 265
           T   L SL  L  L +L++   +++++G        SL  LN+ +  +T           
Sbjct: 64  TDKALRSLQVLTQLEHLDIWGSEITNEGASVLIAFTSLSFLNISWTRVTCLPILPTLRCL 123

Query: 266 --DECLVH------LKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSS 315
               C +H       + L +LE L + +   G  DE   ++    +L  L++S     SS
Sbjct: 124 NMSNCTIHSICNGEFQVLIHLEKLIISAASFGNIDEVFSSILP-SSLTYLDMSS--CSSS 180

Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLS-SLKSLNLDARQITDTGLAALT-SLTG 373
            L  L  + NLE ++LS++ I   ++  +A +  +LK L+L   ++T   L  L  ++  
Sbjct: 181 NLYFLGNMRNLEHLDLSYSRIISDAIEYIANIGMNLKFLSLSNSEVTSQALCVLAGTVPS 240

Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEI----CGGGLTDAGVK-----HIKDLSSLTL 424
           LT L L   +I DS   Y+    +LR L +      G + +  VK      +++L  L  
Sbjct: 241 LTTLSLAHTKIDDSALLYISMMPSLRILNLSRTCIKGFMMENSVKVLSLSALEELKYLES 300

Query: 425 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHA 468
           LNL+ N  L D  +  ++ L  L  L + +  ++   L  L+ A
Sbjct: 301 LNLN-NTQLMDDVIPPLASLRALKYLFLKSDFLSDPALHALSSA 343


>gi|290976637|ref|XP_002671046.1| predicted protein [Naegleria gruberi]
 gi|284084611|gb|EFC38302.1| predicted protein [Naegleria gruberi]
          Length = 350

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 161/318 (50%), Gaps = 8/318 (2%)

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N I+++  ++   LINL +L +      +  +  L  L KL  LNI  C  IT+  ++ +
Sbjct: 12  NVISSEATQSIGNLINLTELSIGYNDIGYKAVEYLSKLEKLTILNISKCK-ITNLGIESM 70

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
            G+  L SL+IS + + DSG+  L  L +LT L+++   +       +S + +L  L++ 
Sbjct: 71  IGMKQLTSLEISENGIDDSGVKSLIELSQLTKLDIDHNEIRTEGCKCISQMKNLTDLSVG 130

Query: 237 RCQLSDDGCEKFSKIGSLKVL-NLGFNEITDECLVHLKGLTNLE---SLNLDSCGIGDEG 292
              + ++G  KF  I  LK L NL  + I    +  ++ +T+L+   SLN+    IGD G
Sbjct: 131 LNGIDEEGI-KF--ICELKQLTNLSAHAIQIVSVDGVQSITSLKQLISLNIGDNWIGDAG 187

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
              ++ +  LK L +  T +G  G + +S +TNL  +++S   + D   + ++GL+ L  
Sbjct: 188 AKVISEMKQLKTLYMHSTLIGIDGTKSISEMTNLTFLDISANNLGDEGAKLISGLNQLIK 247

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
           L +    I + G  +++ L  LT LD+    I   GA  L   K+L  L+I    + D+G
Sbjct: 248 LWISEISIGNEGAESISKLEKLTELDVHRNSIETEGAKSLSKLKHLTRLDISENFIEDSG 307

Query: 413 VKHIKDLSSLTLLNLSQN 430
           VK++  +  L  LN+  N
Sbjct: 308 VKYLSKMKKLKHLNVYDN 325



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 151/327 (46%), Gaps = 29/327 (8%)

Query: 67  SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
           +D+    + +L     L  L+ + C +I++ G+E + G+  LTSL    N  I   G+K+
Sbjct: 36  NDIGYKAVEYLSKLEKLTILNISKC-KITNLGIESMIGMKQLTSLEISEN-GIDDSGVKS 93

Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
              L  L KLD++                    +  + C CI        S + NL  L 
Sbjct: 94  LIELSQLTKLDIDH-----------------NEIRTEGCKCI--------SQMKNLTDLS 128

Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-CLDSLSALGSLFYLNLNRCQLSDDGC 245
           +  + + + GI ++  L++LT L+     + +   + S+++L  L  LN+    + D G 
Sbjct: 129 VGLNGIDEEGIKFICELKQLTNLSAHAIQIVSVDGVQSITSLKQLISLNIGDNWIGDAGA 188

Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
           +  S++  LK L +    I  +    +  +TNL  L++ +  +GDEG   ++GL  L  L
Sbjct: 189 KVISEMKQLKTLYMHSTLIGIDGTKSISEMTNLTFLDISANNLGDEGAKLISGLNQLIKL 248

Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
            +S+  +G+ G   +S L  L  +++    I     + L+ L  L  L++    I D+G+
Sbjct: 249 WISEISIGNEGAESISKLEKLTELDVHRNSIETEGAKSLSKLKHLTRLDISENFIEDSGV 308

Query: 366 AALTSLTGLTHLDLFGARITDSGAAYL 392
             L+ +  L HL+++   I D+G  YL
Sbjct: 309 KYLSKMKKLKHLNVYDNGI-DNGNKYL 334



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 134/260 (51%), Gaps = 2/260 (0%)

Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
           + +L  L+L    +++    S+  L +L  L++    +     E  SK+  L +LN+   
Sbjct: 1   MDQLKKLDLISNVISSEATQSIGNLINLTELSIGYNDIGYKAVEYLSKLEKLTILNISKC 60

Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
           +IT+  +  + G+  L SL +   GI D G+ +L  L  L  L++   ++ + G + +S 
Sbjct: 61  KITNLGIESMIGMKQLTSLEISENGIDDSGVKSLIELSQLTKLDIDHNEIRTEGCKCISQ 120

Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALTSLTGLTHLDLFG 381
           + NL  +++   GI +  ++ +  L  L +L+  A QI    G+ ++TSL  L  L++  
Sbjct: 121 MKNLTDLSVGLNGIDEEGIKFICELKQLTNLSAHAIQIVSVDGVQSITSLKQLISLNIGD 180

Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
             I D+GA  +   K L++L +    +   G K I ++++LT L++S N NL D+  +LI
Sbjct: 181 NWIGDAGAKVISEMKQLKTLYMHSTLIGIDGTKSISEMTNLTFLDISAN-NLGDEGAKLI 239

Query: 442 SGLTGLVSLNVSNSRITSAG 461
           SGL  L+ L +S   I + G
Sbjct: 240 SGLNQLIKLWISEISIGNEG 259



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 96/195 (49%)

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           +  L+ L+L S  I  E   ++  L NL  L +    +G   + +LS L  L  +N+S  
Sbjct: 1   MDQLKKLDLISNVISSEATQSIGNLINLTELSIGYNDIGYKAVEYLSKLEKLTILNISKC 60

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            I++  +  + G+  L SL +    I D+G+ +L  L+ LT LD+    I   G   +  
Sbjct: 61  KITNLGIESMIGMKQLTSLEISENGIDDSGVKSLIELSQLTKLDIDHNEIRTEGCKCISQ 120

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
            KNL  L +   G+ + G+K I +L  LT L+      ++   ++ I+ L  L+SLN+ +
Sbjct: 121 MKNLTDLSVGLNGIDEEGIKFICELKQLTNLSAHAIQIVSVDGVQSITSLKQLISLNIGD 180

Query: 455 SRITSAGLRHLNHAR 469
           + I  AG + ++  +
Sbjct: 181 NWIGDAGAKVISEMK 195


>gi|255523038|ref|ZP_05390010.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
 gi|255513153|gb|EET89421.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
          Length = 421

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/246 (36%), Positives = 131/246 (53%), Gaps = 22/246 (8%)

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
           ++GL+ L+SL + +C      D+ PL GLTNLK L +    +TD  I+ LKGL  L  L 
Sbjct: 186 IEGLVNLQSLTLTYCQI---EDISPLKGLTNLKELMLYDDNITD--ISPLKGLTNLEFLE 240

Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
           L G  +T   + SL  L  L  ++L   ++ D       ++ +L+ LNL +N+ITD  + 
Sbjct: 241 LYGNQITD--IPSLEGLTKLKDIDLGNNKIHD--ITLLRELSNLQELNLVYNKITD--IS 294

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
            LK LTNL SL+LD+  I D  +  L  L NLK L L   ++  + +  L GLTNL S+ 
Sbjct: 295 SLKELTNLNSLDLDNNNISD--ISPLEKLSNLKSLSLGSNKI--TDISSLKGLTNLNSLV 350

Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
           L    I+D S   L GL++L  LNL + +I+D     ++ L GLT+L     + T +   
Sbjct: 351 LDDNNITDIS--PLKGLTNLNFLNLGSNKISD-----ISPLEGLTNLSTLWLKDTPTNEV 403

Query: 391 YLRNFK 396
           Y    K
Sbjct: 404 YKEKLK 409



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/202 (38%), Positives = 109/202 (53%), Gaps = 20/202 (9%)

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
           +L+ L L + +I D  +  LKGLTNL+ L L    I D  +  L GL NL+ LEL   Q+
Sbjct: 191 NLQSLTLTYCQIED--ISPLKGLTNLKELMLYDDNITD--ISPLKGLTNLEFLELYGNQI 246

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
             + +  L GLT L+ I+L    I D +L  L  LS+L+ LNL   +ITD  +++L  LT
Sbjct: 247 --TDIPSLEGLTKLKDIDLGNNKIHDITL--LRELSNLQELNLVYNKITD--ISSLKELT 300

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
            L  LDL    I+D   + L    NL+SL +    +TD  +  +K L++L  L L  N N
Sbjct: 301 NLNSLDLDNNNISD--ISPLEKLSNLKSLSLGSNKITD--ISSLKGLTNLNSLVLDDN-N 355

Query: 433 LTDKTLELISGLTGLVSLNVSN 454
           +TD     IS L GL +LN  N
Sbjct: 356 ITD-----ISPLKGLTNLNFLN 372



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 88/242 (36%), Positives = 117/242 (48%), Gaps = 39/242 (16%)

Query: 82  NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--E 139
           NLQSL   +C QI D  +  L+GL+NL  L    +N      +K   GL NL  L+L   
Sbjct: 191 NLQSLTLTYC-QIED--ISPLKGLTNLKELMLYDDNITDISPLK---GLTNLEFLELYGN 244

Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
           + T I      L+GL KL+ +++   N I D  +  L  L+NL+ L +  +K+TD  I+ 
Sbjct: 245 QITDIPS----LEGLTKLKDIDLG-NNKIHDITL--LRELSNLQELNLVYNKITD--ISS 295

Query: 200 LKGLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
           LK L  L  L+L+   ++  + L+ LS L SL             G  K + I SLK L 
Sbjct: 296 LKELTNLNSLDLDNNNISDISPLEKLSNLKSLSL-----------GSNKITDISSLKGLT 344

Query: 259 ------LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
                 L  N ITD  +  LKGLTNL  LNL S  I D  +  L GL NL  L L DT  
Sbjct: 345 NLNSLVLDDNNITD--ISPLKGLTNLNFLNLGSNKISD--ISPLEGLTNLSTLWLKDTPT 400

Query: 313 GS 314
             
Sbjct: 401 NE 402


>gi|149918909|ref|ZP_01907395.1| hypothetical protein PPSIR1_16600 [Plesiocystis pacifica SIR-1]
 gi|149820283|gb|EDM79700.1| hypothetical protein PPSIR1_16600 [Plesiocystis pacifica SIR-1]
          Length = 1503

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 80/236 (33%), Positives = 117/236 (49%), Gaps = 12/236 (5%)

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGI---AYLKGLQKLTLLNLEGCPVTAACLDSL 224
           I D+ ++ LS LT L+ L +S + +T +G+   +++ GL +L+L + +G     A  + L
Sbjct: 90  IDDAMVEVLSKLTGLQILDLSRNAITATGVESLSWIGGLTQLSLRSNQGVGDRGA--EIL 147

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
           ++L SL  LNL+RC +   G +   K+G L+ L L  N I DE  V L  L  L  L L 
Sbjct: 148 ASLRSLEVLNLDRCGIGPIGAQALGKLGELRELVLSHNRILDEGAVALAKLAKLRELELS 207

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRK 343
            C +GDEG   L  L  L+ L L    VG       +G L  L+ + L+   + +   R 
Sbjct: 208 VCQLGDEGAAALAKLRALEILRLGGNHVGPKAAAAFAGHLDKLQELELAVNQVGEEGARS 267

Query: 344 LAG-LSSLKSLNLDARQITDTGLAALTSLTG-----LTHLDLFGARITDSGAAYLR 393
           L+G L  L+ L+L   +I D GL  L    G     L HLDL    IT    + LR
Sbjct: 268 LSGMLGHLRRLDLSYNKIGDAGLEGLLQPWGKRRVALEHLDLIENGITLVSPSVLR 323



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 75/262 (28%), Positives = 117/262 (44%), Gaps = 37/262 (14%)

Query: 92  IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVN 150
           + I D  +E L  L+ L  L   RN AITA G+++ + +  L +L L     +   G   
Sbjct: 88  LDIDDAMVEVLSKLTGLQILDLSRN-AITATGVESLSWIGGLTQLSLRSNQGVGDRGAEI 146

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
           L  L  LE LN+  C  I     + L  L  L+ L +S +++ D G              
Sbjct: 147 LASLRSLEVLNLDRCG-IGPIGAQALGKLGELRELVLSHNRILDEGAV------------ 193

Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
                       +L+ L  L  L L+ CQL D+G    +K+ +L++L LG N +  +   
Sbjct: 194 ------------ALAKLAKLRELELSVCQLGDEGAAALAKLRALEILRLGGNHVGPKAAA 241

Query: 271 HLKG-LTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHL-------- 320
              G L  L+ L L    +G+EG  +L+G L +L+ L+LS  ++G +GL  L        
Sbjct: 242 AFAGHLDKLQELELAVNQVGEEGARSLSGMLGHLRRLDLSYNKIGDAGLEGLLQPWGKRR 301

Query: 321 SGLTNLESINLSFTGISDGSLR 342
             L +L+ I    T +S   LR
Sbjct: 302 VALEHLDLIENGITLVSPSVLR 323



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 72/236 (30%), Positives = 107/236 (45%), Gaps = 8/236 (3%)

Query: 237 RCQLSDDGCEKFSKI----GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           RC +S  G +  + +      L+ L L   +I D  +  L  LT L+ L+L    I   G
Sbjct: 59  RCFVSGFGADVLAALVERGQGLERLALVALDIDDAMVEVLSKLTGLQILDLSRNAITATG 118

Query: 293 LVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
           + +L+ +  L  L L   Q VG  G   L+ L +LE +NL   GI     + L  L  L+
Sbjct: 119 VESLSWIGGLTQLSLRSNQGVGDRGAEILASLRSLEVLNLDRCGIGPIGAQALGKLGELR 178

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL-TD 410
            L L   +I D G  AL  L  L  L+L   ++ D GAA L   + L  L + G  +   
Sbjct: 179 ELVLSHNRILDEGAVALAKLAKLRELELSVCQLGDEGAAALAKLRALEILRLGGNHVGPK 238

Query: 411 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG-LVSLNVSNSRITSAGLRHL 465
           A       L  L  L L+ N  + ++    +SG+ G L  L++S ++I  AGL  L
Sbjct: 239 AAAAFAGHLDKLQELELAVN-QVGEEGARSLSGMLGHLRRLDLSYNKIGDAGLEGL 293


>gi|384253405|gb|EIE26880.1| RNI-like protein [Coccomyxa subellipsoidea C-169]
          Length = 641

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 133/475 (28%), Positives = 206/475 (43%), Gaps = 78/475 (16%)

Query: 55  QGSSLLSVDLSGSDVTDSG---------LIHLKDCSNLQSLD-FNFCIQISDGGLEHLRG 104
           +G++L  +DLSG D+T            L  L+  +  Q L  ++ C Q+ D   E L  
Sbjct: 57  RGTTLRKLDLSGCDLTMPAGTLLDLLWNLTQLEHLAIAQQLPKYDACFQVDDELCEALGR 116

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT-RIHGGLVNLKGLMKLESLNI- 162
           +  LT L  R+ + IT +G+   AGL  L  L L  C   +     ++    +L  L+I 
Sbjct: 117 MRGLTHLDLRQPSPITGRGLDRLAGLERLRTLRLGPCAGLLDSSFQSIACHTQLTELDIC 176

Query: 163 -----KWCNCITDSDMKPLSGLTNLKSLQIS---CSKVTDSGIAYLKGLQKLTLLNLEGC 214
                + C  +    +  L+ L NL SLQ++    S+  D  +  L  L  LT L L   
Sbjct: 177 FGEKGRTCTSLPAEVLAQLATLPNLVSLQLAGFDTSRTED--LPSLHCLSTLTHLGLSQV 234

Query: 215 -----PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDEC 268
                P   A       + SL  L LN+C +  D     S+  +L+ L++   + +    
Sbjct: 235 TNSRSPGGVATFLRCMPIQSLIRLELNQCNIGIDVFPLISQATTLRALSVTQCSPVYGLD 294

Query: 269 LVHLKGLTNLESLNLD---------------------SCGIGDEGLV-----NLTGLC-- 300
           L H+ GL+ LESL LD                     SC    + L      N+ GL   
Sbjct: 295 LHHMSGLSRLESLTLDHSHPLSSNWSFLQHLTRLTQFSCAAHKDALPMSSDHNIAGLLEN 354

Query: 301 -----NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS-----------LRKL 344
                +L+ L+L    +G   L  ++ LT L  +++S  G    S           L +L
Sbjct: 355 AIARKDLQRLDLRGHLLGKE-LGDIAALTALTELDISAAGCDVASHPSIACVFNLGLAQL 413

Query: 345 AGLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           AGLS L+ LNL    + + GL  + S L  L HLDL G+ + D+  A+L     L+SL I
Sbjct: 414 AGLSRLQRLNLACTAVDEEGLRGICSGLRELLHLDLSGSAVEDADLAHLTKLPRLQSLRI 473

Query: 404 CGGG----LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
                   ++DAG+  +  +S+L  L +  N  +T   L+ +S LTGL  L+VS+
Sbjct: 474 NNQPALDDISDAGLAEVSRVSALRCLEVKGNQCITAAGLKHLSALTGLSDLDVSD 528



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 61/123 (49%), Gaps = 5/123 (4%)

Query: 43  GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFN---FCIQISDGGL 99
            V+++ +  I S    LL +DLSGS V D+ L HL     LQSL  N       ISD GL
Sbjct: 428 AVDEEGLRGICSGLRELLHLDLSGSAVEDADLAHLTKLPRLQSLRINNQPALDDISDAGL 487

Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKL 157
             +  +S L  L  + N  ITA G+K  + L  L  LD+  C+ I+    L +L+G   L
Sbjct: 488 AEVSRVSALRCLEVKGNQCITAAGLKHLSALTGLSDLDVSDCSAINPKRALNSLQGCTAL 547

Query: 158 ESL 160
             L
Sbjct: 548 RML 550



 Score = 38.1 bits (87), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 69/124 (55%), Gaps = 11/124 (8%)

Query: 123 GMKAFAGLINLVKLDLERCTRI-HGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           G+   AGL  L +L+L  CT +   GL  +  GL +L  L++   + + D+D+  L+ L 
Sbjct: 409 GLAQLAGLSRLQRLNLA-CTAVDEEGLRGICSGLRELLHLDLSG-SAVEDADLAHLTKLP 466

Query: 181 NLKSLQI----SCSKVTDSGIAYLKGLQKLTLLNLEG--CPVTAACLDSLSALGSLFYLN 234
            L+SL+I    +   ++D+G+A +  +  L  L ++G  C +TAA L  LSAL  L  L+
Sbjct: 467 RLQSLRINNQPALDDISDAGLAEVSRVSALRCLEVKGNQC-ITAAGLKHLSALTGLSDLD 525

Query: 235 LNRC 238
           ++ C
Sbjct: 526 VSDC 529


>gi|290976253|ref|XP_002670855.1| predicted protein [Naegleria gruberi]
 gi|284084418|gb|EFC38111.1| predicted protein [Naegleria gruberi]
          Length = 286

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 133/273 (48%), Gaps = 3/273 (1%)

Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
           CN + D     +S    L SL +  +++  +G   +  +++LT LN++   V      S+
Sbjct: 11  CNQLGDESAHKISQFKQLTSLGVENNEIGPTGAKSISTMKQLTSLNIKNNSVGVEGAHSI 70

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
           S +  L +L+++   + D+G +   ++  L  LN+ +N+IT   ++  K +  L  LN+ 
Sbjct: 71  SNMTRLTHLDISLNNIGDEGAKIICQLKQLTNLNISYNQITSNGMIPFKEMKQLIILNVG 130

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
           S  IG+EG+ N++GL  L  L++     G+ G + +S LTNL  +      I +   + +
Sbjct: 131 SNRIGNEGIENISGLSQLTELDIGGCDFGNEGAKSISQLTNLTCLYCCSNNIREEGAKSI 190

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
           + L  +  LNL    +   G   ++ +  LTHL +    I D GA  L   +NL+ L I 
Sbjct: 191 SQLEKVTCLNLCVNYLHADGAKHISQMKQLTHLYMDSNEIGDDGAEDLCGLENLKVLSIR 250

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
           G  ++   V+ I +L   T   +    NL D+T
Sbjct: 251 GNNISYDMVQAIHELGKFT---VESEGNLFDET 280



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%)

Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
           +S L  L+L+  Q+ D     ++    LT L +    I  +GA  +   K L SL I   
Sbjct: 1   MSQLTELSLECNQLGDESAHKISQFKQLTSLGVENNEIGPTGAKSISTMKQLTSLNIKNN 60

Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
            +   G   I +++ LT L++S N N+ D+  ++I  L  L +LN+S ++ITS G+
Sbjct: 61  SVGVEGAHSISNMTRLTHLDISLN-NIGDEGAKIICQLKQLTNLNISYNQITSNGM 115



 Score = 45.1 bits (105), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 105/229 (45%), Gaps = 35/229 (15%)

Query: 57  SSLLSVDLSGSDVTDSG---LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           + L  +D+S +++ D G   +  LK  +NL ++ +N   QI+  G+   + +  L  L+ 
Sbjct: 74  TRLTHLDISLNNIGDEGAKIICQLKQLTNL-NISYN---QITSNGMIPFKEMKQLIILNV 129

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
             +N I  +G++  +GL  L +LD+  C   + G                          
Sbjct: 130 G-SNRIGNEGIENISGLSQLTELDIGGCDFGNEG-------------------------A 163

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           K +S LTNL  L    + + + G   +  L+K+T LNL    + A     +S +  L +L
Sbjct: 164 KSISQLTNLTCLYCCSNNIREEGAKSISQLEKVTCLNLCVNYLHADGAKHISQMKQLTHL 223

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL--VHLKGLTNLES 280
            ++  ++ DDG E    + +LKVL++  N I+ + +  +H  G   +ES
Sbjct: 224 YMDSNEIGDDGAEDLCGLENLKVLSIRGNNISYDMVQAIHELGKFTVES 272


>gi|254416357|ref|ZP_05030110.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
           PCC 7420]
 gi|196176795|gb|EDX71806.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
           PCC 7420]
          Length = 438

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 111/339 (32%), Positives = 164/339 (48%), Gaps = 48/339 (14%)

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
           +  L G SNLT L +  +N+IT   +   AGL NL  L LE        + ++  L +L 
Sbjct: 66  ISPLAGFSNLTKL-YLESNSIT--DISPLAGLSNLTVLSLE-----SNSITDVSPLAELS 117

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
           +L   + N  + +D+ PL+GL+NL  L ++ + +TD  I  L GL  LT+L L+   +T 
Sbjct: 118 NLTKLYLNNNSITDVSPLAGLSNLTKLYLNNNSITD--IGPLAGLSNLTVLYLDSNSITD 175

Query: 219 ACLDSLSALGSLFYLNLNRCQLSD--------------------DGCEKFSKIGSLKVLN 258
             +  L+ L +L  LNL    ++D                          +++ +L VL 
Sbjct: 176 --VSPLAGLSNLTVLNLGNNSITDVNPLAELSNLTKVFLTNNSITNISPLAELSNLTVLY 233

Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ---VGS- 314
           L  N ITD  +  L GL+NL  LNLD+  I D  +  L GL NL  L L +     +G  
Sbjct: 234 LYSNSITD--ISPLAGLSNLTVLNLDNNSITD--ISPLAGLSNLTELSLGNADFFIIGEN 289

Query: 315 --SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
             + +  L+GL+NL  +NL    I+D S   LA LS+L  L+L +  ITD  ++ L  L+
Sbjct: 290 SITDISPLAGLSNLTVLNLGRNSITDVS--PLAELSNLTKLSLGSNSITD--ISPLAGLS 345

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
            LT L L    ITD   + L    NL  L +    +TDA
Sbjct: 346 NLTKLYLDSNSITD--VSPLAGLSNLTELFLSSNSITDA 382



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 115/332 (34%), Positives = 163/332 (49%), Gaps = 47/332 (14%)

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
           W N ITD  + PL+G +NL  L +  + +TD  I+ L GL  LT+L+LE   +T   +  
Sbjct: 59  WDNSITD--ISPLAGFSNLTKLYLESNSITD--ISPLAGLSNLTVLSLESNSITD--VSP 112

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           L+ L +L  L LN   ++D      + + +L  L L  N ITD  +  L GL+NL  L L
Sbjct: 113 LAELSNLTKLYLNNNSITD--VSPLAGLSNLTKLYLNNNSITD--IGPLAGLSNLTVLYL 168

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISD---- 338
           DS  I D  +  L GL NL  L L +  +   + L  LS LT +   N S T IS     
Sbjct: 169 DSNSITD--VSPLAGLSNLTVLNLGNNSITDVNPLAELSNLTKVFLTNNSITNISPLAEL 226

Query: 339 -------------GSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLT--HLDLF-- 380
                          +  LAGLS+L  LNLD   ITD + LA L++LT L+  + D F  
Sbjct: 227 SNLTVLYLYSNSITDISPLAGLSNLTVLNLDNNSITDISPLAGLSNLTELSLGNADFFII 286

Query: 381 -GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
               ITD   + L    NL  L +    +TD  V  + +LS+LT L+L  N  +TD  + 
Sbjct: 287 GENSITD--ISPLAGLSNLTVLNLGRNSITD--VSPLAELSNLTKLSLGSNS-ITD--IS 339

Query: 440 LISGLTGLVSLNVSNSRITS----AGLRHLNH 467
            ++GL+ L  L + ++ IT     AGL +L  
Sbjct: 340 PLAGLSNLTKLYLDSNSITDVSPLAGLSNLTE 371



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 98/292 (33%), Positives = 143/292 (48%), Gaps = 34/292 (11%)

Query: 45  NDKWMDVIASQG-SSLLSVDLSGSDVTDSGLIHLKDCSNLQ--SLDFNFCIQISDGGLEH 101
           N+   DV    G S+L  + L+ + +TD G   L   SNL    LD N    +S      
Sbjct: 126 NNSITDVSPLAGLSNLTKLYLNNNSITDIG--PLAGLSNLTVLYLDSNSITDVS-----P 178

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
           L GLSNLT L+   NN+IT   +   A L NL K+ L      +  + N+  L +L +L 
Sbjct: 179 LAGLSNLTVLNLG-NNSIT--DVNPLAELSNLTKVFLT-----NNSITNISPLAELSNLT 230

Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV----- 216
           + +    + +D+ PL+GL+NL  L +  + +TD  I+ L GL  LT L+L          
Sbjct: 231 VLYLYSNSITDISPLAGLSNLTVLNLDNNSITD--ISPLAGLSNLTELSLGNADFFIIGE 288

Query: 217 -TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
            +   +  L+ L +L  LNL R  ++D      +++ +L  L+LG N ITD  +  L GL
Sbjct: 289 NSITDISPLAGLSNLTVLNLGRNSITD--VSPLAELSNLTKLSLGSNSITD--ISPLAGL 344

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
           +NL  L LDS  I D  +  L GL NL  L LS   +  +    L+ LTNL 
Sbjct: 345 SNLTKLYLDSNSITD--VSPLAGLSNLTELFLSSNSITDAS--PLAQLTNLR 392



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 110/323 (34%), Positives = 156/323 (48%), Gaps = 49/323 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           S+L  + L  + +TD  +  L + SNL  L  N    I+D  +  L GLSNLT L +  N
Sbjct: 95  SNLTVLSLESNSITD--VSPLAELSNLTKLYLNNN-SITD--VSPLAGLSNLTKL-YLNN 148

Query: 117 NAITAQGMKAFAGLINL--VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD---- 170
           N+IT  G    AGL NL  + LD    T +      L GL  L  LN+   N ITD    
Sbjct: 149 NSITDIG--PLAGLSNLTVLYLDSNSITDVSP----LAGLSNLTVLNLG-NNSITDVNPL 201

Query: 171 ----------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
                           +++ PL+ L+NL  L +  + +TD  I+ L GL  LT+LNL+  
Sbjct: 202 AELSNLTKVFLTNNSITNISPLAELSNLTVLYLYSNSITD--ISPLAGLSNLTVLNLDNN 259

Query: 215 PVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG---SLKVLNLGFNEITDECLV 270
            +T  + L  LS L  L   N +   + ++     S +    +L VLNLG N ITD  + 
Sbjct: 260 SITDISPLAGLSNLTELSLGNADFFIIGENSITDISPLAGLSNLTVLNLGRNSITD--VS 317

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
            L  L+NL  L+L S  I D  +  L GL NL  L L    +  + +  L+GL+NL  + 
Sbjct: 318 PLAELSNLTKLSLGSNSITD--ISPLAGLSNLTKLYLDSNSI--TDVSPLAGLSNLTELF 373

Query: 331 LSFTGISDGSLRKLAGLSSLKSL 353
           LS   I+D S   LA L++L+ L
Sbjct: 374 LSSNSITDAS--PLAQLTNLRRL 394


>gi|290970038|ref|XP_002668017.1| predicted protein [Naegleria gruberi]
 gi|284081041|gb|EFC35273.1| predicted protein [Naegleria gruberi]
          Length = 306

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 131/271 (48%), Gaps = 26/271 (9%)

Query: 160 LNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
           +N+K    + DS   +K +S +  L SL IS +++   G+ ++ G+++LT L++      
Sbjct: 55  INLKVFRYLLDSFEKLKFISDMKRLTSLDISFNQIGVQGVKFISGMKQLTSLDI------ 108

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
                           + N  Q SD+G +  S++  L  L +  N I DE   ++  +  
Sbjct: 109 ----------------SFN--QASDEGAKYISEMKQLTSLGISKNLIGDEGAKYISEMKQ 150

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           L SLNL    I DEG   ++ +  L  L++S   +   G++ +  +  L S+N+ + GI 
Sbjct: 151 LTSLNLYYNEICDEGAKYISEMEQLTSLDISSNLIDVEGVKFIKEMKQLTSLNIYYNGIG 210

Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
               + ++ +  L SLN+   +I D G   ++ +  L  L +   +I D GA Y+   + 
Sbjct: 211 VEGAKYISEMKQLTSLNITNNEIGDEGAKYISEMKQLISLIISRNQIGDEGAKYICEMEQ 270

Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
           L SL I G  + D G K+I D+  LT L++S
Sbjct: 271 LTSLNISGNEIGDEGAKYISDMKQLTSLDIS 301



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 103/199 (51%), Gaps = 1/199 (0%)

Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
           E L  +  +  L SL++    IG +G+  ++G+  L  L++S  Q    G +++S +  L
Sbjct: 68  EKLKFISDMKRLTSLDISFNQIGVQGVKFISGMKQLTSLDISFNQASDEGAKYISEMKQL 127

Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
            S+ +S   I D   + ++ +  L SLNL   +I D G   ++ +  LT LD+    I  
Sbjct: 128 TSLGISKNLIGDEGAKYISEMKQLTSLNLYYNEICDEGAKYISEMEQLTSLDISSNLIDV 187

Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
            G  +++  K L SL I   G+   G K+I ++  LT LN++ N  + D+  + IS +  
Sbjct: 188 EGVKFIKEMKQLTSLNIYYNGIGVEGAKYISEMKQLTSLNITNN-EIGDEGAKYISEMKQ 246

Query: 447 LVSLNVSNSRITSAGLRHL 465
           L+SL +S ++I   G +++
Sbjct: 247 LISLIISRNQIGDEGAKYI 265



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 116/233 (49%), Gaps = 1/233 (0%)

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
           L  +S +  L  L+++  Q+   G +  S +  L  L++ FN+ +DE   ++  +  L S
Sbjct: 70  LKFISDMKRLTSLDISFNQIGVQGVKFISGMKQLTSLDISFNQASDEGAKYISEMKQLTS 129

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           L +    IGDEG   ++ +  L  L L   ++   G +++S +  L S+++S   I    
Sbjct: 130 LGISKNLIGDEGAKYISEMKQLTSLNLYYNEICDEGAKYISEMEQLTSLDISSNLIDVEG 189

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
           ++ +  +  L SLN+    I   G   ++ +  LT L++    I D GA Y+   K L S
Sbjct: 190 VKFIKEMKQLTSLNIYYNGIGVEGAKYISEMKQLTSLNITNNEIGDEGAKYISEMKQLIS 249

Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
           L I    + D G K+I ++  LT LN+S N  + D+  + IS +  L SL++S
Sbjct: 250 LIISRNQIGDEGAKYICEMEQLTSLNISGN-EIGDEGAKYISDMKQLTSLDIS 301



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 115/237 (48%), Gaps = 6/237 (2%)

Query: 99  LEHLRGLSNLTSL--SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156
           L+ +  +  LTSL  SF   N I  QG+K  +G+  L  LD+        G   +  + +
Sbjct: 70  LKFISDMKRLTSLDISF---NQIGVQGVKFISGMKQLTSLDISFNQASDEGAKYISEMKQ 126

Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
           L SL I   N I D   K +S +  L SL +  +++ D G  Y+  +++LT L++    +
Sbjct: 127 LTSLGIS-KNLIGDEGAKYISEMKQLTSLNLYYNEICDEGAKYISEMEQLTSLDISSNLI 185

Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
               +  +  +  L  LN+    +  +G +  S++  L  LN+  NEI DE   ++  + 
Sbjct: 186 DVEGVKFIKEMKQLTSLNIYYNGIGVEGAKYISEMKQLTSLNITNNEIGDEGAKYISEMK 245

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
            L SL +    IGDEG   +  +  L  L +S  ++G  G +++S +  L S+++SF
Sbjct: 246 QLISLIISRNQIGDEGAKYICEMEQLTSLNISGNEIGDEGAKYISDMKQLTSLDISF 302



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 141/314 (44%), Gaps = 38/314 (12%)

Query: 6   ISQQIFN------ELV--YSRCLTEVSLEAFRDCALQD--LCLGQYPGVNDKWMDV-IAS 54
           IS+Q FN      +LV  + +  TE  +E F     ++  + L  +  + D +  +   S
Sbjct: 15  ISKQFFNVIKERSKLVIQFKQKFTEKRVELFMKSQFRNRIINLKVFRYLLDSFEKLKFIS 74

Query: 55  QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
               L S+D+S + +   G+  +     L SLD +F  Q SD G +++  +  LTSL   
Sbjct: 75  DMKRLTSLDISFNQIGVQGVKFISGMKQLTSLDISFN-QASDEGAKYISEMKQLTSLGIS 133

Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
           + N I  +G K  + +  L  L+L                         + N I D   K
Sbjct: 134 K-NLIGDEGAKYISEMKQLTSLNL-------------------------YYNEICDEGAK 167

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
            +S +  L SL IS + +   G+ ++K +++LT LN+    +       +S +  L  LN
Sbjct: 168 YISEMEQLTSLDISSNLIDVEGVKFIKEMKQLTSLNIYYNGIGVEGAKYISEMKQLTSLN 227

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           +   ++ D+G +  S++  L  L +  N+I DE   ++  +  L SLN+    IGDEG  
Sbjct: 228 ITNNEIGDEGAKYISEMKQLISLIISRNQIGDEGAKYICEMEQLTSLNISGNEIGDEGAK 287

Query: 295 NLTGLCNLKCLELS 308
            ++ +  L  L++S
Sbjct: 288 YISDMKQLTSLDIS 301


>gi|242089917|ref|XP_002440791.1| hypothetical protein SORBIDRAFT_09g006650 [Sorghum bicolor]
 gi|241946076|gb|EES19221.1| hypothetical protein SORBIDRAFT_09g006650 [Sorghum bicolor]
          Length = 608

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 123/473 (26%), Positives = 199/473 (42%), Gaps = 118/473 (24%)

Query: 2   LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
           LP  ++  +F  L   R L    LE F   +++++ L  +  V+ +W+   A  GS    
Sbjct: 44  LPAPLADALFRRLAARRLLFPSLLEVFSR-SVEEVDLSGFLSVDAEWL---AYLGSFRFL 99

Query: 62  VDLSGSD---VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
             L+ +D   + +  +  L   + L+ LD + C +ISD G++H+  + +L  L       
Sbjct: 100 RVLTLADCKNIDNDAVWSLSGMNTLKDLDLSRCKKISDAGIKHIVTIESLEKLHLSETE- 158

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           +T  G+   + L NL  LDL       GG++                  +TD  ++ L  
Sbjct: 159 LTNNGVMLISSLTNLSFLDL-------GGIL------------------MTDKSLQSLQV 193

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE-------GCPVTAACLD--------- 222
           LT L+ L I  S+ T+ G + LK   +L  LNL          P T  CL+         
Sbjct: 194 LTRLEHLDIWGSETTNEGASTLKSFARLIFLNLALTRVNHLSIPPTTRCLNMSNCEIHSI 253

Query: 223 ----------------SLSALG------------SLFYLNLNRCQLSDDGCEKFSKIGSL 254
                           S +  G            SL +L+L+ C+LS+       K+ +L
Sbjct: 254 CDEDSEVPVPLENFIVSAATFGNIDKVFSSIQASSLTHLDLSSCKLSN--LSFLEKMKNL 311

Query: 255 KVLNLGFNEITDECLVHLKGL-TNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQV 312
           + L+L +N ITD  + H+  L TNL+ L+L + GI  + L  L G + NL  L L++T++
Sbjct: 312 EHLDLSYNIITDGAIEHIAKLGTNLQYLSLKNTGITSQALCILAGTVPNLTSLSLANTKI 371

Query: 313 GSS----------------------------------GLRHLSG---LTNLESINLSFTG 335
             S                                  G  H+S    L  LES+NL  T 
Sbjct: 372 DDSALAYIGMIPLLRTIDLSQTSIKGCALENKFYLMAGFTHMSAFEHLKYLESLNLEDTP 431

Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
           +S   +  LA L++LK L L +  ++D  L AL++ + L HL   G  ++ SG
Sbjct: 432 LSAEVIPPLASLAALKYLYLKSDFLSDPALHALSAASNLIHLGFCGNILSSSG 484



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 143/300 (47%), Gaps = 31/300 (10%)

Query: 192 VTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFS 249
           V    +AYL   + L +L L  C  +    + SLS + +L  L+L+RC+ +SD G +   
Sbjct: 85  VDAEWLAYLGSFRFLRVLTLADCKNIDNDAVWSLSGMNTLKDLDLSRCKKISDAGIKHIV 144

Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
            I SL+ L+L   E+T+  ++ +  LTNL  L+L    + D+ L +L  L  L+ L++  
Sbjct: 145 TIESLEKLHLSETELTNNGVMLISSLTNLSFLDLGGILMTDKSLQSLQVLTRLEHLDIWG 204

Query: 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369
           ++  + G   L     L  +NL+ T ++  S+        L   N +   I D       
Sbjct: 205 SETTNEGASTLKSFARLIFLNLALTRVNHLSIPPTT--RCLNMSNCEIHSICDEDSEVPV 262

Query: 370 SL----------------------TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
            L                      + LTHLDL   ++  S  ++L   KNL  L++    
Sbjct: 263 PLENFIVSAATFGNIDKVFSSIQASSLTHLDLSSCKL--SNLSFLEKMKNLEHLDLSYNI 320

Query: 408 LTDAGVKHIKDL-SSLTLLNLSQNCNLTDKTLELISG-LTGLVSLNVSNSRITSAGLRHL 465
           +TD  ++HI  L ++L  L+L +N  +T + L +++G +  L SL+++N++I  + L ++
Sbjct: 321 ITDGAIEHIAKLGTNLQYLSL-KNTGITSQALCILAGTVPNLTSLSLANTKIDDSALAYI 379



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 107/191 (56%), Gaps = 11/191 (5%)

Query: 246 EKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK 303
           E FS+  S++ ++L GF  +  E L +L     L  L L  C  I ++ + +L+G+  LK
Sbjct: 68  EVFSR--SVEEVDLSGFLSVDAEWLAYLGSFRFLRVLTLADCKNIDNDAVWSLSGMNTLK 125

Query: 304 CLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
            L+LS   ++  +G++H+  + +LE ++LS T +++  +  ++ L++L  L+L    +TD
Sbjct: 126 DLDLSRCKKISDAGIKHIVTIESLEKLHLSETELTNNGVMLISSLTNLSFLDLGGILMTD 185

Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
             L +L  LT L HLD++G+  T+ GA+ L++F  L  L +    LT   V H+    + 
Sbjct: 186 KSLQSLQVLTRLEHLDIWGSETTNEGASTLKSFARLIFLNL---ALTR--VNHLSIPPTT 240

Query: 423 TLLNLSQNCNL 433
             LN+S NC +
Sbjct: 241 RCLNMS-NCEI 250



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 118/244 (48%), Gaps = 34/244 (13%)

Query: 55  QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL-SNLTSLSF 113
           Q SSL  +DLS   +  S L  L+   NL+ LD ++ I I+DG +EH+  L +NL  LS 
Sbjct: 285 QASSLTHLDLSSCKL--SNLSFLEKMKNLEHLDLSYNI-ITDGAIEHIAKLGTNLQYLSL 341

Query: 114 RRNNAITAQGMKAFAGLI-NLVKLDLERCTRI------HGGLVNLKGLMKLESLNIKWCN 166
           + N  IT+Q +   AG + NL  L L   T+I      + G++ L   + L   +IK   
Sbjct: 342 K-NTGITSQALCILAGTVPNLTSLSLAN-TKIDDSALAYIGMIPLLRTIDLSQTSIK--G 397

Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
           C  ++    ++G T++            S   +LK L+ L   NLE  P++A  +  L++
Sbjct: 398 CALENKFYLMAGFTHM------------SAFEHLKYLESL---NLEDTPLSAEVIPPLAS 442

Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF--NEITDECLVHLKGLTNLESLNLD 284
           L +L YL L    LSD      S   +L  ++LGF  N ++   L+     T L  L+L 
Sbjct: 443 LAALKYLYLKSDFLSDPALHALSAASNL--IHLGFCGNILSSSGLLQFVPPTTLCVLDLS 500

Query: 285 SCGI 288
            C I
Sbjct: 501 GCWI 504


>gi|290993458|ref|XP_002679350.1| leucine rich repeat protein [Naegleria gruberi]
 gi|284092966|gb|EFC46606.1| leucine rich repeat protein [Naegleria gruberi]
          Length = 528

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 159/306 (51%), Gaps = 6/306 (1%)

Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
           K    L  L++   NC  +  +K L  L +L  L +S +K  + G+ Y+  ++ LT LN+
Sbjct: 125 KRFYNLRELDLSGQNCYREG-VKCLKSLKHLTVLNVSKTKCAN-GVKYIGMIENLTSLNI 182

Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
               +    ++ LS+L  L  L++N C L+ +  +  S++ SL  L++G N++    L+ 
Sbjct: 183 SSVHLENQDVEHLSSLKKLTSLDVNNCNLTFEDADIISRLKSLTFLDIGNNDLGPLGLLP 242

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
           +  + +L++L+++   I  E   +LT + NL  L +S    G+ GL+ +S + NL  +++
Sbjct: 243 ISSMESLQTLHINRIWIESESCESLTKMINLTELYISKNDFGNEGLKWISSMKNLRVLDI 302

Query: 332 S----FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
                   + D + + +A L+ L  LN+   +IT +G   LTSLT LT L + G  I D 
Sbjct: 303 GNHSIIDALGDEAAKLVASLTQLTYLNISQHEITSSGAKYLTSLTKLTTLFIDGNEICDD 362

Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
               + + K L  L I GG ++  GVK I  L  LT+L++S+      + L+ +  +  L
Sbjct: 363 FLDSISSLKELTYLNISGGQISVKGVKSISKLPRLTILDISECVGCCSEVLKQLGLMKQL 422

Query: 448 VSLNVS 453
            SL++S
Sbjct: 423 TSLHLS 428



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 192/421 (45%), Gaps = 46/421 (10%)

Query: 83  LQSLDFNFCI----QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
           +  + FNF I    +       H + +  +  L  + N  I     K F    NL +LDL
Sbjct: 79  MTRIKFNFRISERREWKKLSQSHQKYIDRVECLHLKYNLLIFTIIQKRFY---NLRELDL 135

Query: 139 --ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
             + C R   G+  LK L  L  LN+    C   + +K +  + NL SL IS   + +  
Sbjct: 136 SGQNCYR--EGVKCLKSLKHLTVLNVSKTKCA--NGVKYIGMIENLTSLNISSVHLENQD 191

Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
           + +L  L+KLT L++  C +T    D +S L SL +L++    L   G    S + SL+ 
Sbjct: 192 VEHLSSLKKLTSLDVNNCNLTFEDADIISRLKSLTFLDIGNNDLGPLGLLPISSMESLQT 251

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV---- 312
           L++    I  E    L  + NL  L +     G+EGL  ++ + NL+ L++ +  +    
Sbjct: 252 LHINRIWIESESCESLTKMINLTELYISKNDFGNEGLKWISSMKNLRVLDIGNHSIIDAL 311

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
           G    + ++ LT L  +N+S   I+    + L  L+ L +L +D  +I D  L +++SL 
Sbjct: 312 GDEAAKLVASLTQLTYLNISQHEITSSGAKYLTSLTKLTTLFIDGNEICDDFLDSISSLK 371

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEI--CGG--------------------GLTD 410
            LT+L++ G +I+  G   +     L  L+I  C G                     LTD
Sbjct: 372 ELTYLNISGGQISVKGVKSISKLPRLTILDISECVGCCSEVLKQLGLMKQLTSLHLSLTD 431

Query: 411 -----AGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
                 G K+  K+L +LT L ++  C L D  ++ ISGL  L  L++ ++ +T   ++H
Sbjct: 432 LVESVEGFKYWHKNLINLTYLEMNF-CGLDDNAIKWISGLPNLKYLDLQSNDLTDDCIQH 490

Query: 465 L 465
           L
Sbjct: 491 L 491



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 159/347 (45%), Gaps = 49/347 (14%)

Query: 52  IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
           I S+  SL  +D+  +D+   GL+ +    +LQ+L  N  I I     E L  + NLT L
Sbjct: 218 IISRLKSLTFLDIGNNDLGPLGLLPISSMESLQTLHINR-IWIESESCESLTKMINLTEL 276

Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
              +N+    +G+K  + + NL  LD+   + I                     + + D 
Sbjct: 277 YISKND-FGNEGLKWISSMKNLRVLDIGNHSII---------------------DALGDE 314

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
             K ++ LT L  L IS  ++T SG  YL  L KLT L ++G  +    LDS+S+L  L 
Sbjct: 315 AAKLVASLTQLTYLNISQHEITSSGAKYLTSLTKLTTLFIDGNEICDDFLDSISSLKELT 374

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
           YLN++  Q+S  G +  SK+  L +L++       EC+                 G   E
Sbjct: 375 YLNISGGQISVKGVKSISKLPRLTILDIS------ECV-----------------GCCSE 411

Query: 292 GLVNLTGLCNLKCLELSDTQVGSS--GLRHL-SGLTNLESINLSFTGISDGSLRKLAGLS 348
            L  L  +  L  L LS T +  S  G ++    L NL  + ++F G+ D +++ ++GL 
Sbjct: 412 VLKQLGLMKQLTSLHLSLTDLVESVEGFKYWHKNLINLTYLEMNFCGLDDNAIKWISGLP 471

Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
           +LK L+L +  +TD  +  L  +  L +L LFG  +T+     L  +
Sbjct: 472 NLKYLDLQSNDLTDDCIQHLLGMKKLEYLSLFGNNMTEKKTKRLEKY 518


>gi|328950290|ref|YP_004367625.1| hypothetical protein Marky_0765 [Marinithermus hydrothermalis DSM
           14884]
 gi|328450614|gb|AEB11515.1| hypothetical protein Marky_0765 [Marinithermus hydrothermalis DSM
           14884]
          Length = 462

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 121/375 (32%), Positives = 174/375 (46%), Gaps = 59/375 (15%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR-- 115
           +L+++DL G+ + D  L  L +   L+ LD     +I+D     L  L+NLT L      
Sbjct: 85  NLVTLDLKGNRIAD--LTPLAELRYLEELDL-VSNRITD-----LAPLANLTRLKRLHLG 136

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
           NN +  Q ++  AGL  L +L +    R+   L  L  L +L  L + W N +TD  ++P
Sbjct: 137 NNQV--QSLEPLAGLTQLTELRIGN-NRV-ADLAPLADLGRLAVL-VAWRNAVTD--LQP 189

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           L+ LT ++ L ++ ++VTD                          L  L+ L  L  L L
Sbjct: 190 LANLTRMRVLSLASNRVTD--------------------------LTPLAELAQLDTLFL 223

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           +  Q++D      + +  LKVL+L FN IT   L  L  L  L  L LD+  I D  L  
Sbjct: 224 SENQIAD--LAPLAGLTQLKVLSLDFNRITH--LDPLARLVELTELGLDANQIAD--LTP 277

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           L GL NL+ L  S+ ++    L  L GL  LE + L+F  I D S   L GL +LK L L
Sbjct: 278 LAGLTNLQVLSASENRIAD--LTPLGGLVRLEQLGLNFNRIRDIS--ALEGLKALKVLEL 333

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
           +  QI +  LA L  LT L  L L   RI D     L    NL  LE+    +TD G   
Sbjct: 334 EGNQIVN--LAPLAGLTELRVLVLGQNRIAD--LTPLGALVNLVQLEVSRNEITDLGA-- 387

Query: 416 IKDLSSLTLLNLSQN 430
           +  L +L  ++L +N
Sbjct: 388 LAQLENLVRVSLVRN 402



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 99/228 (43%), Gaps = 44/228 (19%)

Query: 124 MKAFAGLINL--VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
           +   AGL  L  + LD  R T +      L  L++L  L +   N I  +D+ PL+GLTN
Sbjct: 231 LAPLAGLTQLKVLSLDFNRITHLDP----LARLVELTELGLD-ANQI--ADLTPLAGLTN 283

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
           L+ L  S +++ D  +  L GL +L  L                       LN NR +  
Sbjct: 284 LQVLSASENRIAD--LTPLGGLVRLEQLG----------------------LNFNRIR-- 317

Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
                    + +LKVL L  N+I +  L  L GLT L  L L    I D  L  L  L N
Sbjct: 318 --DISALEGLKALKVLELEGNQIVN--LAPLAGLTELRVLVLGQNRIAD--LTPLGALVN 371

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLS 348
           L  LE+S  ++   G   L+ L NL  ++L    +++ G L   AGL 
Sbjct: 372 LVQLEVSRNEITDLG--ALAQLENLVRVSLVRNRVTNLGPLVANAGLQ 417



 Score = 38.1 bits (87), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 9/112 (8%)

Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
           L+ L++LN   R+I    L  L     L  LDL G RI D     L   + L  L++   
Sbjct: 61  LARLEALNAAERRIQ--SLEGLEHAVNLVTLDLKGNRIAD--LTPLAELRYLEELDLVSN 116

Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
            +TD  +  + +L+ L  L+L  N     ++LE ++GLT L  L + N+R+ 
Sbjct: 117 RITD--LAPLANLTRLKRLHLGNN---QVQSLEPLAGLTQLTELRIGNNRVA 163


>gi|449019210|dbj|BAM82612.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D]
          Length = 2325

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 135/481 (28%), Positives = 214/481 (44%), Gaps = 107/481 (22%)

Query: 83   LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR----RNNAI-TAQGMKAFAGLINLVKLD 137
            L+ LD + CI ++D GL  L  ++ L++   +     + AI +    +A AGL+    L 
Sbjct: 1801 LKHLDLSSCIHLTDEGLGAL--VAALSTPEAKAGDSEDTAIESVATTEASAGLV--APLT 1856

Query: 138  LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQISCSKVTDS 195
             E          +  G   LE+L++  C  + D  ++PL      +L+ + +S +++T +
Sbjct: 1857 TEALLYSSSSNSSSSG--TLETLSVAHCFRLGDRSLRPLLRQHRQSLRVVDLSYTRITGA 1914

Query: 196  GIAYLKGLQKLTLLNLEGCPVTAAC-LDSLSALG--------SLFYLNLNRC-QLSDDG- 244
             +  L  L +L  L+L GC  T +   D+ +  G         L +L+L +C QL  DG 
Sbjct: 1915 VLQELGALPQLQSLSLCGCGETLSVESDAATRFGEELALPGKQLVHLDLGKCAQLVTDGF 1974

Query: 245  ----------------------------CEK--------FSKIGSLKVLNLGFNEITDEC 268
                                         E+        +S   +L+ L++    +TD  
Sbjct: 1975 LAALAGLASGRRTHHQYNRQQYQQNPAAVERLVHATHGVYSSRDTLRSLSVHGCRLTDRS 2034

Query: 269  LVH-LKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS-GLRHLSGLTN 325
            L H ++    LE L+L  C  I D GL +L  L +L+ L+L+DT V S+ G   L+ L  
Sbjct: 2035 LSHYVRLFQGLERLDLSQCRLITDAGLEHLQSLKSLRELDLADTNVTSAVGASLLARLRQ 2094

Query: 326  LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA------------------- 366
            L  ++LS+T +     + L+ L  L+ L LDAR I+D  L                    
Sbjct: 2095 LRRLDLSYTAVQSNITKSLSTLEQLEWLGLDARLISDDALQVEENEASPEPVSSRDVAAP 2154

Query: 367  ALTSLT-------------GLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAG 412
            AL+S T              L HLDLFGA ITD G +YL +    + SLE+C G LTDA 
Sbjct: 2155 ALSSATVAVHLHRRIGLPRHLRHLDLFGAHITDRGMSYLVQACPYVESLEVCSGALTDAA 2214

Query: 413  VKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTG----------LVSLNVSNSRITSAG 461
            ++ I + L  L  LN+SQN  ++D  L   + L            L +LN++ + +T  G
Sbjct: 2215 LRLIAQHLPYLRALNISQNMRISDAGLREYARLAQVQQDLGQPHLLETLNLAFTAVTWRG 2274

Query: 462  L 462
            L
Sbjct: 2275 L 2275



 Score = 42.0 bits (97), Expect = 0.59,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 52   IASQGSSLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
            + S   +L S+ + G  +TD  L H ++    L+ LD + C  I+D GLEHL+ L +L  
Sbjct: 2013 VYSSRDTLRSLSVHGCRLTDRSLSHYVRLFQGLERLDLSQCRLITDAGLEHLQSLKSLRE 2072

Query: 111  LSFRRNNAITAQG 123
            L     N  +A G
Sbjct: 2073 LDLADTNVTSAVG 2085


>gi|254411888|ref|ZP_05025664.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
           PCC 7420]
 gi|196181610|gb|EDX76598.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
           PCC 7420]
          Length = 415

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 133/391 (34%), Positives = 202/391 (51%), Gaps = 60/391 (15%)

Query: 11  FNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT 70
           F EL  ++   ++S+EA R      L L +  G ND   ++ A   SS   + L+  +++
Sbjct: 35  FKELCQNQA--DLSVEAGRTV---QLLLAEV-GTND--CELAAENLSSRTELSLNRQEIS 86

Query: 71  DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
           D  L  L + +NL+SL  +   QI+D  +  L  L+NL  L+ RRN  IT   +     L
Sbjct: 87  D--LSPLSELTNLESLHLDGN-QITD--ICPLTELTNLKYLTLRRN-QIT--DICPLTEL 138

Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
            NL +L LE   +I   + +L  L  LE LN++  N IT   + PL+ L NLK L +  +
Sbjct: 139 TNLTELSLE-GNQI-ADVNSLAELTNLEFLNLE-NNQITT--ISPLAELQNLKRLHLEDN 193

Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
           ++TD  I+ L GLQ LT L+LE   +T  + L   + L  LF + LN+ +         S
Sbjct: 194 QITD--ISSLAGLQNLTWLHLEDNQITDISPLSEFTNLKGLFLV-LNQIK----DISPLS 246

Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD----EGLVNLT-------- 297
           ++ +LK L L FN+I D  +  L  L NL  L+L+   I D     GL NLT        
Sbjct: 247 QLTNLKALELKFNQIQD--ISPLAELQNLTWLDLEDNQITDISPLSGLTNLTFLSLTYNQ 304

Query: 298 --------GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
                   GL NLK L+L+  Q+    +  L+ LTNLE+++L+   I+D S   L+GL +
Sbjct: 305 IQDVSPLSGLTNLKRLQLNFNQI--QDISPLAELTNLETLSLNGNQITDVS--PLSGLQN 360

Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
           L +L+L+  QITD     ++ L+GLT+L + 
Sbjct: 361 LNALSLNGNQITD-----ISPLSGLTNLKVL 386



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 157/327 (48%), Gaps = 74/327 (22%)

Query: 171 SDMKPLSGLTNLKSLQISCSKVTD--------------------SGIAYLKGLQKLTLLN 210
           SD+ PLS LTNL+SL +  +++TD                    + I  L  L  LT L+
Sbjct: 86  SDLSPLSELTNLESLHLDGNQITDICPLTELTNLKYLTLRRNQITDICPLTELTNLTELS 145

Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
           LEG  +  A ++SL+ L +L +LNL   Q++       +++ +LK L+L  N+ITD  + 
Sbjct: 146 LEGNQI--ADVNSLAELTNLEFLNLENNQIT--TISPLAELQNLKRLHLEDNQITD--IS 199

Query: 271 HLKGLTNLESLNLDSCGIGD----EGLVNLTG----------------LCNLKCLELSDT 310
            L GL NL  L+L+   I D        NL G                L NLK LEL   
Sbjct: 200 SLAGLQNLTWLHLEDNQITDISPLSEFTNLKGLFLVLNQIKDISPLSQLTNLKALELKFN 259

Query: 311 QVGS--------------------SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
           Q+                      + +  LSGLTNL  ++L++  I D S   L+GL++L
Sbjct: 260 QIQDISPLAELQNLTWLDLEDNQITDISPLSGLTNLTFLSLTYNQIQDVS--PLSGLTNL 317

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
           K L L+  QI D  ++ L  LT L  L L G +ITD   + L   +NL +L + G  +TD
Sbjct: 318 KRLQLNFNQIQD--ISPLAELTNLETLSLNGNQITD--VSPLSGLQNLNALSLNGNQITD 373

Query: 411 AGVKHIKDLSSLTLLNLSQNCNLTDKT 437
             +  +  L++L +L+L++N   +D +
Sbjct: 374 --ISPLSGLTNLKVLHLTENPIFSDSS 398



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 95/282 (33%), Positives = 137/282 (48%), Gaps = 49/282 (17%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  + L G+ + D     L + +NL+ L+     QI+   +  L  L NL  L    +
Sbjct: 139 TNLTELSLEGNQIADVN--SLAELTNLEFLNLENN-QIT--TISPLAELQNLKRLHLE-D 192

Query: 117 NAITAQGMKAFAGLINLVKLDLE--RCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSD 172
           N IT   + + AGL NL  L LE  + T I       NLKGL  +        N I   D
Sbjct: 193 NQIT--DISSLAGLQNLTWLHLEDNQITDISPLSEFTNLKGLFLV-------LNQI--KD 241

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           + PLS LTNLK+L++  +++ D  I+ L  LQ LT L+LE   +T   +  LS L +L +
Sbjct: 242 ISPLSQLTNLKALELKFNQIQD--ISPLAELQNLTWLDLEDNQITD--ISPLSGLTNLTF 297

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-- 290
           L+L   Q+ D      S + +LK L L FN+I D  +  L  LTNLE+L+L+   I D  
Sbjct: 298 LSLTYNQIQD--VSPLSGLTNLKRLQLNFNQIQD--ISPLAELTNLETLSLNGNQITDVS 353

Query: 291 --EGLVNL----------------TGLCNLKCLELSDTQVGS 314
              GL NL                +GL NLK L L++  + S
Sbjct: 354 PLSGLQNLNALSLNGNQITDISPLSGLTNLKVLHLTENPIFS 395


>gi|428163352|gb|EKX32427.1| hypothetical protein GUITHDRAFT_121393 [Guillardia theta CCMP2712]
          Length = 1894

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 163/356 (45%), Gaps = 3/356 (0%)

Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
           GL++L +L +  +N +T+     F GL +L  L L              GL  L++L + 
Sbjct: 472 GLASLQTL-YLYDNELTSIPATGFNGLASLQTLYLSSNELTSIPETVFAGLASLQTLYLS 530

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
             N +T       +GL +L++L +S +++T        GL  L  L L    +T+     
Sbjct: 531 -GNELTSVPETVFAGLASLQTLYLSGNELTSVPETVFAGLASLQTLYLSSNELTSIPETV 589

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
            + L SL YL L+  +L+      F+ + SL+ L L +NE+T        GL +L++L L
Sbjct: 590 FAGLASLQYLYLSSNKLTSVPETVFAGLASLQTLYLSYNELTSVPETVFNGLASLQTLYL 649

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
               +         GL +L+ L L D ++ S      +GL +L S++L F  ++      
Sbjct: 650 SYNKLTSVPATVFAGLASLRSLGLYDNKLTSVPATVFAGLASLRSLSLDFNELTSIPETV 709

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
            AGL+SL++L L   ++T         L  L +L L   ++T           ++++L +
Sbjct: 710 FAGLTSLQTLYLYDNELTSVPETVFNGLASLQYLYLDNNKLTSIPETVFAGLASVQTLYL 769

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            G  LT         L+SL  LN+S N  LT     +  GL  L +L++S +++TS
Sbjct: 770 SGNELTSVPETVFNGLASLQYLNVSSN-ELTSVPETVFDGLASLQTLDLSYNKLTS 824



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 143/308 (46%), Gaps = 7/308 (2%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N +T       +GL +L+ L +S +K+T        GL  + +L L G  +T+      +
Sbjct: 100 NKLTSVPATVFAGLASLQYLYLSSNKLTSIPETVFAGLASIRVLILSGNELTSVPETVFA 159

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            L SL YL L+  +L+      F+ + SL+ L L  N++T        GL +L SL LD+
Sbjct: 160 GLASLQYLYLDNNKLTSVPATVFNGLASLQTLYLSSNKLTSVPETVFNGLASLRSLYLDN 219

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
             +         GL +L+ L L D ++ S      +GL +L+++ LS+  ++        
Sbjct: 220 NELTSVPETVFAGLASLQTLYLYDNELTSIPATVFAGLASLQTLYLSYNKLTSVPETVFD 279

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
           GL+SL+SL L   ++T         L  L +L L   ++T   A       +L++L + G
Sbjct: 280 GLASLRSLYLSYNELTSVPETVFDGLASLQYLYLSSNKLTSVPATVFAGLTSLQTLYLSG 339

Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS------ 459
             LT         L+SL  L LS N  LT     + +GL  L +L +S++++TS      
Sbjct: 340 NELTSVPETVFTGLASLQTLYLSSN-KLTSVPETVFNGLASLQTLYLSSNKLTSVPATVF 398

Query: 460 AGLRHLNH 467
           AGL  L +
Sbjct: 399 AGLASLQY 406



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 161/358 (44%), Gaps = 7/358 (1%)

Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLN 161
           GL++L SL +   N +T+     F GL +L  L L   + T +   +    GL  L++L 
Sbjct: 280 GLASLRSL-YLSYNELTSVPETVFDGLASLQYLYLSSNKLTSVPATV--FAGLTSLQTLY 336

Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
           +   N +T       +GL +L++L +S +K+T        GL  L  L L    +T+   
Sbjct: 337 LS-GNELTSVPETVFTGLASLQTLYLSSNKLTSVPETVFNGLASLQTLYLSSNKLTSVPA 395

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
              + L SL YL L   +L+      F+ + SL+ L L  N++T        GL +L++L
Sbjct: 396 TVFAGLASLQYLYLYDNELTSIPATVFAGLTSLQSLYLSSNKLTSVPETVFDGLASLQTL 455

Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
            L S  +         GL +L+ L L D ++ S      +GL +L+++ LS   ++    
Sbjct: 456 YLSSNKLTSVPATVFNGLASLQTLYLYDNELTSIPATGFNGLASLQTLYLSSNELTSIPE 515

Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
              AGL+SL++L L   ++T         L  L  L L G  +T           +L++L
Sbjct: 516 TVFAGLASLQTLYLSGNELTSVPETVFAGLASLQTLYLSGNELTSVPETVFAGLASLQTL 575

Query: 402 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            +    LT         L+SL  L LS N  LT     + +GL  L +L +S + +TS
Sbjct: 576 YLSSNELTSIPETVFAGLASLQYLYLSSN-KLTSVPETVFAGLASLQTLYLSYNELTS 632



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 160/356 (44%), Gaps = 3/356 (0%)

Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
           GL++L +L +  +N +T+     F GL +L  L L+             GL  L++L + 
Sbjct: 184 GLASLQTL-YLSSNKLTSVPETVFNGLASLRSLYLDNNELTSVPETVFAGLASLQTLYL- 241

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
           + N +T       +GL +L++L +S +K+T        GL  L  L L    +T+     
Sbjct: 242 YDNELTSIPATVFAGLASLQTLYLSYNKLTSVPETVFDGLASLRSLYLSYNELTSVPETV 301

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
              L SL YL L+  +L+      F+ + SL+ L L  NE+T        GL +L++L L
Sbjct: 302 FDGLASLQYLYLSSNKLTSVPATVFAGLTSLQTLYLSGNELTSVPETVFTGLASLQTLYL 361

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
            S  +         GL +L+ L LS  ++ S      +GL +L+ + L    ++      
Sbjct: 362 SSNKLTSVPETVFNGLASLQTLYLSSNKLTSVPATVFAGLASLQYLYLYDNELTSIPATV 421

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
            AGL+SL+SL L + ++T         L  L  L L   ++T   A       +L++L +
Sbjct: 422 FAGLTSLQSLYLSSNKLTSVPETVFDGLASLQTLYLSSNKLTSVPATVFNGLASLQTLYL 481

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
               LT         L+SL  L LS N  LT     + +GL  L +L +S + +TS
Sbjct: 482 YDNELTSIPATGFNGLASLQTLYLSSN-ELTSIPETVFAGLASLQTLYLSGNELTS 536



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 199/450 (44%), Gaps = 43/450 (9%)

Query: 57   SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
            +SL ++ LS +++T          ++LQ+L  ++  +++        GL++L SL    +
Sbjct: 618  ASLQTLYLSYNELTSVPETVFNGLASLQTLYLSYN-KLTSVPATVFAGLASLRSLGLY-D 675

Query: 117  NAITAQGMKAFAGLINL--VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
            N +T+     FAGL +L  + LD    T I   +    GL  L++L + + N +T     
Sbjct: 676  NKLTSVPATVFAGLASLRSLSLDFNELTSIPETV--FAGLTSLQTLYL-YDNELTSVPET 732

Query: 175  PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
              +GL +L+ L +  +K+T        GL  +  L L G  +T+      + L SL YLN
Sbjct: 733  VFNGLASLQYLYLDNNKLTSIPETVFAGLASVQTLYLSGNELTSVPETVFNGLASLQYLN 792

Query: 235  LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
            ++  +L+      F  + SL+ L+L +N++T        GL +L SL LD+  +      
Sbjct: 793  VSSNELTSVPETVFDGLASLQTLDLSYNKLTSVPETVFAGLASLRSLYLDNNELTSVPET 852

Query: 295  NLTGLCNLKCLELSDTQVGSSGLRHLS------------------------GLTNLESIN 330
               GL +L  L+L   ++ S  L                            GL +LE++ 
Sbjct: 853  VFAGLDSLWRLDLHSNRLASLALSLFYDCHDLMELYLNNNLLSGLLPGSLDGLVSLEALY 912

Query: 331  LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
            L    ++D S    A LSSL +L L   +++     A   L  LT L +   R+T     
Sbjct: 913  LHSNQLADISSDVFAQLSSLTTLTLHNNRLSSLSPGAFAGLARLTTLSIHHNRLTRLSPG 972

Query: 391  YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
              +    L +L++    LT      +  L ++  L+LS N  L D   + +  LTGL +L
Sbjct: 973  AFQGLSTLATLDLHDNHLTSLTAGALTGLDAMRALDLSSN-KLADLPAQALHNLTGLRNL 1031

Query: 451  NVSNSRITS---------AGLRH--LNHAR 469
            ++ ++++TS         AGL +  L+H R
Sbjct: 1032 SLDDNQLTSLSAGVLEPLAGLEYLWLSHNR 1061



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 159/358 (44%), Gaps = 7/358 (1%)

Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLN 161
           GL++L +L +  +N +T+     F GL +L  L L   + T +   +    GL  L+ L 
Sbjct: 352 GLASLQTL-YLSSNKLTSVPETVFNGLASLQTLYLSSNKLTSVPATV--FAGLASLQYLY 408

Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
           + + N +T       +GLT+L+SL +S +K+T        GL  L  L L    +T+   
Sbjct: 409 L-YDNELTSIPATVFAGLTSLQSLYLSSNKLTSVPETVFDGLASLQTLYLSSNKLTSVPA 467

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
              + L SL  L L   +L+      F+ + SL+ L L  NE+T        GL +L++L
Sbjct: 468 TVFNGLASLQTLYLYDNELTSIPATGFNGLASLQTLYLSSNELTSIPETVFAGLASLQTL 527

Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
            L    +         GL +L+ L LS  ++ S      +GL +L+++ LS   ++    
Sbjct: 528 YLSGNELTSVPETVFAGLASLQTLYLSGNELTSVPETVFAGLASLQTLYLSSNELTSIPE 587

Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
              AGL+SL+ L L + ++T         L  L  L L    +T           +L++L
Sbjct: 588 TVFAGLASLQYLYLSSNKLTSVPETVFAGLASLQTLYLSYNELTSVPETVFNGLASLQTL 647

Query: 402 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            +    LT         L+SL  L L  N  LT     + +GL  L SL++  + +TS
Sbjct: 648 YLSYNKLTSVPATVFAGLASLRSLGLYDN-KLTSVPATVFAGLASLRSLSLDFNELTS 704



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 115/254 (45%), Gaps = 1/254 (0%)

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
           LT + L G  +T+      + L SL YL L+  +L+      F+ + S++VL L  NE+T
Sbjct: 92  LTEIRLSGNKLTSVPATVFAGLASLQYLYLSSNKLTSIPETVFAGLASIRVLILSGNELT 151

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
                   GL +L+ L LD+  +         GL +L+ L LS  ++ S      +GL +
Sbjct: 152 SVPETVFAGLASLQYLYLDNNKLTSVPATVFNGLASLQTLYLSSNKLTSVPETVFNGLAS 211

Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           L S+ L    ++       AGL+SL++L L   ++T         L  L  L L   ++T
Sbjct: 212 LRSLYLDNNELTSVPETVFAGLASLQTLYLYDNELTSIPATVFAGLASLQTLYLSYNKLT 271

Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
                      +LRSL +    LT         L+SL  L LS N  LT     + +GLT
Sbjct: 272 SVPETVFDGLASLRSLYLSYNELTSVPETVFDGLASLQYLYLSSN-KLTSVPATVFAGLT 330

Query: 446 GLVSLNVSNSRITS 459
            L +L +S + +TS
Sbjct: 331 SLQTLYLSGNELTS 344



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 157/349 (44%), Gaps = 11/349 (3%)

Query: 104  GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLN 161
            GL++L  L +  NN +T+     FAGL ++  L L     T +   + N  GL  L+ LN
Sbjct: 736  GLASLQYL-YLDNNKLTSIPETVFAGLASVQTLYLSGNELTSVPETVFN--GLASLQYLN 792

Query: 162  IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
            +   N +T        GL +L++L +S +K+T        GL  L  L L+   +T+   
Sbjct: 793  VS-SNELTSVPETVFDGLASLQTLDLSYNKLTSVPETVFAGLASLRSLYLDNNELTSVPE 851

Query: 222  DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
               + L SL+ L+L+  +L+      F     L  L L  N ++      L GL +LE+L
Sbjct: 852  TVFAGLDSLWRLDLHSNRLASLALSLFYDCHDLMELYLNNNLLSGLLPGSLDGLVSLEAL 911

Query: 282  NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
             L S  + D        L +L  L L + ++ S      +GL  L ++++    ++  S 
Sbjct: 912  YLHSNQLADISSDVFAQLSSLTTLTLHNNRLSSLSPGAFAGLARLTTLSIHHNRLTRLSP 971

Query: 342  RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
                GLS+L +L+L    +T     ALT L  +  LDL   ++ D  A  L N   LR+L
Sbjct: 972  GAFQGLSTLATLDLHDNHLTSLTAGALTGLDAMRALDLSSNKLADLPAQALHNLTGLRNL 1031

Query: 402  EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
             +    LT      ++ L+ L  L LS N     +  E+ +GL  L SL
Sbjct: 1032 SLDDNQLTSLSAGVLEPLAGLEYLWLSHN-----RLAEVPAGLGSLASL 1075



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 163/367 (44%), Gaps = 34/367 (9%)

Query: 93   QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN 150
            Q++D   +    LS+LT+L+   NN +++    AFAGL  L  L +   R TR+  G   
Sbjct: 917  QLADISSDVFAQLSSLTTLTLH-NNRLSSLSPGAFAGLARLTTLSIHHNRLTRLSPG--A 973

Query: 151  LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
             +GL  L +L++   N +T      L+GL  +++L +S +K+ D     L  L  L  L+
Sbjct: 974  FQGLSTLATLDLH-DNHLTSLTAGALTGLDAMRALDLSSNKLADLPAQALHNLTGLRNLS 1032

Query: 211  LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
            L+   +T+     L  L  L YL L+  +L++        + SL+ L L  N +T   + 
Sbjct: 1033 LDDNQLTSLSAGVLEPLAGLEYLWLSHNRLAEVPA-GLGSLASLRYLLLDHNPLTSLDVS 1091

Query: 271  HLKGLTNLESLNLDS---CGIGDEGLVNLTGLCNLKCLELSDTQVGSSG---LRHLSGLT 324
             L    +L +L ++S     +  +    L  L  L   +  D Q  S+    L  LS LT
Sbjct: 1092 LLDNKPDLRALGVNSDAFKALSAQRPSVLETLLELWLCKSDDDQDQSAAGELLDKLSQLT 1151

Query: 325  NLESINLSFTGISDGSLRKLAG---------------------LSSLKSLNLDARQITDT 363
             L       + I  G L  L+                      L SL+SL L    +T  
Sbjct: 1152 GLYLFGFDQSLIHAGMLSSLSSVRVLWLEDNLLDQLPPGTFDQLPSLQSLYLIHNGLTAV 1211

Query: 364  GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
             +AAL++L+GLT L +    IT   A   R+   LR+L++ G  ++    +   +L ++ 
Sbjct: 1212 PVAALSNLSGLTELHIVNDGITRVPAGAFRSLSGLRTLDLSGNLISSIEAEAFDNLDNVR 1271

Query: 424  LLNLSQN 430
             L+LS N
Sbjct: 1272 QLDLSNN 1278


>gi|290994542|ref|XP_002679891.1| predicted protein [Naegleria gruberi]
 gi|284093509|gb|EFC47147.1| predicted protein [Naegleria gruberi]
          Length = 359

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 143/304 (47%), Gaps = 1/304 (0%)

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           + A+G    + L +L  LD+     +  G   ++ + +L  LNI   N I     K +  
Sbjct: 51  VNAEGANMISNLAHLADLDISNNQLLERGSKIIREMTQLTKLNISRNN-INAGGTKSICE 109

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           +T L  L IS + + + G +Y+ G+ KLT L++    +    + SL  + +L  LN++ C
Sbjct: 110 MTQLTDLDISNNFIGNEGASYIGGMTKLTNLSISENHIGVEGIKSLFHINNLICLNISSC 169

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
           ++ D+G    S++  L  L +  NEI       +  +  L  LN+    +G+EG   +  
Sbjct: 170 KIGDEGARLISEMKQLTTLEISHNEIGSYGSKAISEMYQLTKLNIRYNVLGNEGAHYIGI 229

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
           +  L  L++S  ++   G + LS L+ L  ++++   I D  ++ ++ L  L  L++   
Sbjct: 230 MEQLTELDISHNRISGEGAKSLSKLSQLTKLDINTNEIGDEGMKSISKLDQLLYLDIGEN 289

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
           +I D G   +  ++ LT L +   R+ + GA  L     L  L+IC   + D  ++ +  
Sbjct: 290 EIGDIGTGLIIGMSKLTELLINDNRVGNDGAESLAQMHQLTQLDICNNPVNDDSLELLSK 349

Query: 419 LSSL 422
           L  L
Sbjct: 350 LPDL 353



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 137/298 (45%), Gaps = 23/298 (7%)

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           +S L +L  L IS +++ + G   ++ + +LT LN+    + A    S+  +  L  L++
Sbjct: 59  ISNLAHLADLDISNNQLLERGSKIIREMTQLTKLNISRNNINAGGTKSICEMTQLTDLDI 118

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           +   + ++G      +  L  L++  N I  E +  L  + NL  LN+ SC IGDEG   
Sbjct: 119 SNNFIGNEGASYIGGMTKLTNLSISENHIGVEGIKSLFHINNLICLNISSCKIGDEGARL 178

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           ++ +  L  LE+S  ++GS G + +S +  L  +N+ +  + +     +  +  L  L++
Sbjct: 179 ISEMKQLTTLEISHNEIGSYGSKAISEMYQLTKLNIRYNVLGNEGAHYIGIMEQLTELDI 238

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
              +I+  G  +L+ L+ LT LD+    I D G   +     L  L+I    + D G   
Sbjct: 239 SHNRISGEGAKSLSKLSQLTKLDINTNEIGDEGMKSISKLDQLLYLDIGENEIGDIGTGL 298

Query: 416 IKDLSSLTLLNLSQN---------------------CN--LTDKTLELISGLTGLVSL 450
           I  +S LT L ++ N                     CN  + D +LEL+S L  L++ 
Sbjct: 299 IIGMSKLTELLINDNRVGNDGAESLAQMHQLTQLDICNNPVNDDSLELLSKLPDLINF 356



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 130/263 (49%), Gaps = 1/263 (0%)

Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
           +++   KLT L++    V A   + +S L  L  L+++  QL + G +   ++  L  LN
Sbjct: 34  FIRMCGKLTKLDVSSWLVNAEGANMISNLAHLADLDISNNQLLERGSKIIREMTQLTKLN 93

Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
           +  N I       +  +T L  L++ +  IG+EG   + G+  L  L +S+  +G  G++
Sbjct: 94  ISRNNINAGGTKSICEMTQLTDLDISNNFIGNEGASYIGGMTKLTNLSISENHIGVEGIK 153

Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
            L  + NL  +N+S   I D   R ++ +  L +L +   +I   G  A++ +  LT L+
Sbjct: 154 SLFHINNLICLNISSCKIGDEGARLISEMKQLTTLEISHNEIGSYGSKAISEMYQLTKLN 213

Query: 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
           +    + + GA Y+   + L  L+I    ++  G K +  LS LT L+++ N  + D+ +
Sbjct: 214 IRYNVLGNEGAHYIGIMEQLTELDISHNRISGEGAKSLSKLSQLTKLDINTN-EIGDEGM 272

Query: 439 ELISGLTGLVSLNVSNSRITSAG 461
           + IS L  L+ L++  + I   G
Sbjct: 273 KSISKLDQLLYLDIGENEIGDIG 295



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 143/313 (45%), Gaps = 9/313 (2%)

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
           G+  L S  +K CN I       + G   L  L +S   V   G   +  L  L  L++ 
Sbjct: 20  GIGTLVSDTVKLCNFI------RMCG--KLTKLDVSSWLVNAEGANMISNLAHLADLDIS 71

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
              +       +  +  L  LN++R  ++  G +   ++  L  L++  N I +E   ++
Sbjct: 72  NNQLLERGSKIIREMTQLTKLNISRNNINAGGTKSICEMTQLTDLDISNNFIGNEGASYI 131

Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
            G+T L +L++    IG EG+ +L  + NL CL +S  ++G  G R +S +  L ++ +S
Sbjct: 132 GGMTKLTNLSISENHIGVEGIKSLFHINNLICLNISSCKIGDEGARLISEMKQLTTLEIS 191

Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
              I     + ++ +  L  LN+    + + G   +  +  LT LD+   RI+  GA  L
Sbjct: 192 HNEIGSYGSKAISEMYQLTKLNIRYNVLGNEGAHYIGIMEQLTELDISHNRISGEGAKSL 251

Query: 393 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
                L  L+I    + D G+K I  L  L  L++ +N  + D    LI G++ L  L +
Sbjct: 252 SKLSQLTKLDINTNEIGDEGMKSISKLDQLLYLDIGEN-EIGDIGTGLIIGMSKLTELLI 310

Query: 453 SNSRITSAGLRHL 465
           +++R+ + G   L
Sbjct: 311 NDNRVGNDGAESL 323


>gi|46447283|ref|YP_008648.1| hypothetical protein pc1649 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400924|emb|CAF24373.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 521

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 101/178 (56%), Gaps = 3/178 (1%)

Query: 65  SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
           S   +TD+GL  L   +NLQ L+ N C +++D GL HL  L NL  L     + +T++G+
Sbjct: 324 SCHHLTDTGLACLPSLTNLQYLNLNGCKKLTDAGLAHLTPLVNLQYLDLGFCDKLTSKGL 383

Query: 125 KAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
             F  LI L  L+L  C  I   GL +L  L+ L+ LN+  C  +TD+ +  L  L  LK
Sbjct: 384 GHFKSLIALQHLNLSGCKFIRDNGLAHLTPLVALQYLNLSQCTFLTDAGLAHLVPLVALK 443

Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ 239
            L +S C+ +T++G+A+L  L  L  LNL GC  ++ A L  L+ L SL +LNL  C+
Sbjct: 444 HLDLSWCNSLTNAGLAHLVHLVALQYLNLSGCIYLSEAGLAHLAPLTSLQHLNLEDCE 501



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/208 (39%), Positives = 115/208 (55%), Gaps = 7/208 (3%)

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
           ++E LN      +TD+ +  L    NLK LQ+ SC  +TD+G+A L  L  L  LNL GC
Sbjct: 291 EIEGLNFSENAYLTDAHLLALKNCKNLKVLQLQSCHHLTDTGLACLPSLTNLQYLNLNGC 350

Query: 215 -PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 271
             +T A L  L+ L +L YL+L  C +L+  G   F  + +L+ LNL G   I D  L H
Sbjct: 351 KKLTDAGLAHLTPLVNLQYLDLGFCDKLTSKGLGHFKSLIALQHLNLSGCKFIRDNGLAH 410

Query: 272 LKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 329
           L  L  L+ LNL  C  + D GL +L  L  LK L+LS    + ++GL HL  L  L+ +
Sbjct: 411 LTPLVALQYLNLSQCTFLTDAGLAHLVPLVALKHLDLSWCNSLTNAGLAHLVHLVALQYL 470

Query: 330 NLS-FTGISDGSLRKLAGLSSLKSLNLD 356
           NLS    +S+  L  LA L+SL+ LNL+
Sbjct: 471 NLSGCIYLSEAGLAHLAPLTSLQHLNLE 498



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 113/221 (51%), Gaps = 26/221 (11%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           +TD+ L+ LK+C NL+ L    C  ++D GL  L  L+NL  L+      +T  G+    
Sbjct: 303 LTDAHLLALKNCKNLKVLQLQSCHHLTDTGLACLPSLTNLQYLNLNGCKKLTDAGLAHLT 362

Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
            L+NL  LDL  C ++   GL + K L+ L+ LN+  C  I D+ +  L+ L  L+ L +
Sbjct: 363 PLVNLQYLDLGFCDKLTSKGLGHFKSLIALQHLNLSGCKFIRDNGLAHLTPLVALQYLNL 422

Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
           S C+ +TD+G+A+L  L  L  L+L  C  +T A L  L  L +L YLNL+       GC
Sbjct: 423 SQCTFLTDAGLAHLVPLVALKHLDLSWCNSLTNAGLAHLVHLVALQYLNLS-------GC 475

Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
              S+ G                L HL  LT+L+ LNL+ C
Sbjct: 476 IYLSEAG----------------LAHLAPLTSLQHLNLEDC 500



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/195 (38%), Positives = 107/195 (54%), Gaps = 7/195 (3%)

Query: 253 SLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD- 309
           +LKVL L   + +TD  L  L  LTNL+ LNL+ C  + D GL +LT L NL+ L+L   
Sbjct: 316 NLKVLQLQSCHHLTDTGLACLPSLTNLQYLNLNGCKKLTDAGLAHLTPLVNLQYLDLGFC 375

Query: 310 TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAA 367
            ++ S GL H   L  L+ +NLS    I D  L  L  L +L+ LNL     +TD GLA 
Sbjct: 376 DKLTSKGLGHFKSLIALQHLNLSGCKFIRDNGLAHLTPLVALQYLNLSQCTFLTDAGLAH 435

Query: 368 LTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLL 425
           L  L  L HLDL +   +T++G A+L +   L+ L + G   L++AG+ H+  L+SL  L
Sbjct: 436 LVPLVALKHLDLSWCNSLTNAGLAHLVHLVALQYLNLSGCIYLSEAGLAHLAPLTSLQHL 495

Query: 426 NLSQNCNLTDKTLEL 440
           NL    + T+    L
Sbjct: 496 NLEDCEHFTNARFRL 510



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 120/228 (52%), Gaps = 10/228 (4%)

Query: 246 EKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN 301
           EK     S ++  L F+E   +TD  L+ LK   NL+ L L SC  + D GL  L  L N
Sbjct: 282 EKILNYFSNEIEGLNFSENAYLTDAHLLALKNCKNLKVLQLQSCHHLTDTGLACLPSLTN 341

Query: 302 LKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-R 358
           L+ L L+   ++  +GL HL+ L NL+ ++L F   ++   L     L +L+ LNL   +
Sbjct: 342 LQYLNLNGCKKLTDAGLAHLTPLVNLQYLDLGFCDKLTSKGLGHFKSLIALQHLNLSGCK 401

Query: 359 QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 416
            I D GLA LT L  L +L+L     +TD+G A+L     L+ L++     LT+AG+ H+
Sbjct: 402 FIRDNGLAHLTPLVALQYLNLSQCTFLTDAGLAHLVPLVALKHLDLSWCNSLTNAGLAHL 461

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLR 463
             L +L  LNLS    L++  L  ++ LT L  LN+ +    T+A  R
Sbjct: 462 VHLVALQYLNLSGCIYLSEAGLAHLAPLTSLQHLNLEDCEHFTNARFR 509



 Score = 45.8 bits (107), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 64/143 (44%), Gaps = 26/143 (18%)

Query: 326 LESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR 383
           +E +N S    ++D  L  L    +LK L L +   +TDTGLA L SLT L +L+L G +
Sbjct: 292 IEGLNFSENAYLTDAHLLALKNCKNLKVLQLQSCHHLTDTGLACLPSLTNLQYLNLNGCK 351

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
                                   LTDAG+ H+  L +L  L+L     LT K L     
Sbjct: 352 -----------------------KLTDAGLAHLTPLVNLQYLDLGFCDKLTSKGLGHFKS 388

Query: 444 LTGLVSLNVSNSR-ITSAGLRHL 465
           L  L  LN+S  + I   GL HL
Sbjct: 389 LIALQHLNLSGCKFIRDNGLAHL 411


>gi|290999054|ref|XP_002682095.1| predicted protein [Naegleria gruberi]
 gi|284095721|gb|EFC49351.1| predicted protein [Naegleria gruberi]
          Length = 357

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 142/286 (49%), Gaps = 24/286 (8%)

Query: 168 ITDSD-MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
            T+ D +K +  L +L  L +  + +   G  Y+  L+KL  L++    + A     +S 
Sbjct: 47  FTNEDGLKSIGTLKHLIHLCVDFNGIGLEGANYISQLEKLESLSIRYNYIGAEGAKVISE 106

Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD-- 284
           + +L +LN++  ++  +G +  S++  L  L++G N++ DE ++ L  L  L +L++D  
Sbjct: 107 MKTLTWLNVSSNRIGGEGAKAISQMKQLTYLDIGDNKVGDEEVILLSELDQLTALSIDRI 166

Query: 285 --------------------SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
                               +C I DE    L+ +  L  L++    + + G++ LSGL+
Sbjct: 167 NPDGINAISKMNKLVSLSINNCTILDE-CEELSKMKQLTLLDIKSNGISAKGVKQLSGLS 225

Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
            L  +N+S     D   + ++ +  L  L ++  QI+D G+ +L  L  LT LD+    I
Sbjct: 226 QLTHLNISSNAFGDDGAKSISEIKQLTELFVNDCQISDDGMKSLGDLNELTILDISNNYI 285

Query: 385 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           TD G+ YL   + L +LE+    L+  GVKH+ +++ LT L++  N
Sbjct: 286 TDEGSLYLTKLEKLTALEVNNNELSYQGVKHMINMNQLTALSIRHN 331



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 151/326 (46%), Gaps = 13/326 (3%)

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG----GLVNLKGLMKLESL 160
           + NLT L+   ++     G+K+   L +L+ L    C   +G    G   +  L KLESL
Sbjct: 35  MKNLTHLTLG-SHFTNEDGLKSIGTLKHLIHL----CVDFNGIGLEGANYISQLEKLESL 89

Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
           +I++ N I     K +S +  L  L +S +++   G   +  +++LT L++    V    
Sbjct: 90  SIRY-NYIGAEGAKVISEMKTLTWLNVSSNRIGGEGAKAISQMKQLTYLDIGDNKVGDEE 148

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
           +  LS L  L  L+++R  ++ DG    SK+  L  L++    I DEC   L  +  L  
Sbjct: 149 VILLSELDQLTALSIDR--INPDGINAISKMNKLVSLSINNCTILDEC-EELSKMKQLTL 205

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           L++ S GI  +G+  L+GL  L  L +S    G  G + +S +  L  + ++   ISD  
Sbjct: 206 LDIKSNGISAKGVKQLSGLSQLTHLNISSNAFGDDGAKSISEIKQLTELFVNDCQISDDG 265

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
           ++ L  L+ L  L++    ITD G   LT L  LT L++    ++  G  ++ N   L +
Sbjct: 266 MKSLGDLNELTILDISNNYITDEGSLYLTKLEKLTALEVNNNELSYQGVKHMINMNQLTA 325

Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLN 426
           L I     T    +       L LLN
Sbjct: 326 LSIRHNQFTFVQNEVFSQFKQLKLLN 351



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 149/326 (45%), Gaps = 33/326 (10%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLE---HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
           LK    L+ L  + C+  +  GLE   ++  L  L SLS R N  I A+G K  + +  L
Sbjct: 53  LKSIGTLKHL-IHLCVDFNGIGLEGANYISQLEKLESLSIRYN-YIGAEGAKVISEMKTL 110

Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
             L++                           N I     K +S +  L  L I  +KV 
Sbjct: 111 TWLNVS-------------------------SNRIGGEGAKAISQMKQLTYLDIGDNKVG 145

Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
           D  +  L  L +LT L+++   +    ++++S +  L  L++N C + D+ CE+ SK+  
Sbjct: 146 DEEVILLSELDQLTALSID--RINPDGINAISKMNKLVSLSINNCTILDE-CEELSKMKQ 202

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
           L +L++  N I+ + +  L GL+ L  LN+ S   GD+G  +++ +  L  L ++D Q+ 
Sbjct: 203 LTLLDIKSNGISAKGVKQLSGLSQLTHLNISSNAFGDDGAKSISEIKQLTELFVNDCQIS 262

Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
             G++ L  L  L  +++S   I+D     L  L  L +L ++  +++  G+  + ++  
Sbjct: 263 DDGMKSLGDLNELTILDISNNYITDEGSLYLTKLEKLTALEVNNNELSYQGVKHMINMNQ 322

Query: 374 LTHLDLFGARITDSGAAYLRNFKNLR 399
           LT L +   + T         FK L+
Sbjct: 323 LTALSIRHNQFTFVQNEVFSQFKQLK 348



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 120/271 (44%), Gaps = 26/271 (9%)

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
           A  +     + +L +L L     ++DG +    +  L  L + FN I  E   ++  L  
Sbjct: 26  AKVIQGFVLMKNLTHLTLGSHFTNEDGLKSIGTLKHLIHLCVDFNGIGLEGANYISQLEK 85

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           LESL++    IG EG   ++ +  L  L +S  ++G  G + +S +  L  +++    + 
Sbjct: 86  LESLSIRYNYIGAEGAKVISEMKTLTWLNVSSNRIGGEGAKAISQMKQLTYLDIGDNKVG 145

Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
           D  +  L+ L  L +L++D  +I   G+ A++ +  L  L +    I D     L   K 
Sbjct: 146 DEEVILLSELDQLTALSID--RINPDGINAISKMNKLVSLSINNCTILDE-CEELSKMKQ 202

Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN-----------------------CNLT 434
           L  L+I   G++  GVK +  LS LT LN+S N                       C ++
Sbjct: 203 LTLLDIKSNGISAKGVKQLSGLSQLTHLNISSNAFGDDGAKSISEIKQLTELFVNDCQIS 262

Query: 435 DKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           D  ++ +  L  L  L++SN+ IT  G  +L
Sbjct: 263 DDGMKSLGDLNELTILDISNNYITDEGSLYL 293



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 104/212 (49%), Gaps = 4/212 (1%)

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
           +K L   +N +  + +     + NL  L L S    ++GL ++  L +L  L +    +G
Sbjct: 14  IKFLTFNYNTLGAKVIQGFVLMKNLTHLTLGSHFTNEDGLKSIGTLKHLIHLCVDFNGIG 73

Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
             G  ++S L  LES+++ +  I     + ++ + +L  LN+ + +I   G  A++ +  
Sbjct: 74  LEGANYISQLEKLESLSIRYNYIGAEGAKVISEMKTLTWLNVSSNRIGGEGAKAISQMKQ 133

Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
           LT+LD+   ++ D     L     L +L I    +   G+  I  ++ L  L+++ NC +
Sbjct: 134 LTYLDIGDNKVGDEEVILLSELDQLTALSI--DRINPDGINAISKMNKLVSLSIN-NCTI 190

Query: 434 TDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
            D+  EL S +  L  L++ ++ I++ G++ L
Sbjct: 191 LDECEEL-SKMKQLTLLDIKSNGISAKGVKQL 221



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 110/238 (46%), Gaps = 4/238 (1%)

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
           +L  N   L     + F  + +L  L LG +   ++ L  +  L +L  L +D  GIG E
Sbjct: 16  FLTFNYNTLGAKVIQGFVLMKNLTHLTLGSHFTNEDGLKSIGTLKHLIHLCVDFNGIGLE 75

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
           G   ++ L  L+ L +    +G+ G + +S +  L  +N+S   I     + ++ +  L 
Sbjct: 76  GANYISQLEKLESLSIRYNYIGAEGAKVISEMKTLTWLNVSSNRIGGEGAKAISQMKQLT 135

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
            L++   ++ D  +  L+ L  LT L +   RI   G   +     L SL I    + D 
Sbjct: 136 YLDIGDNKVGDEEVILLSELDQLTALSI--DRINPDGINAISKMNKLVSLSINNCTILDE 193

Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
             + +  +  LTLL++  N  ++ K ++ +SGL+ L  LN+S++     G + ++  +
Sbjct: 194 -CEELSKMKQLTLLDIKSN-GISAKGVKQLSGLSQLTHLNISSNAFGDDGAKSISEIK 249


>gi|374850803|dbj|BAL53782.1| hypothetical conserved protein, partial [uncultured planctomycete]
          Length = 351

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 137/268 (51%), Gaps = 3/268 (1%)

Query: 166 NCITDSDMKPLSGLTN--LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
           N I D ++  L+ +    + SL +S +++T  G   +  L+ L  L L    V    L  
Sbjct: 72  NLIGDVEIAKLASIPEVCICSLDLSHARLTPQGWRKIAELRALRELYLADSNVDDEDLQY 131

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           L+ LGSL  L+L    +   G +   +I +L+VL L   +I DE +  +  LT LE L+L
Sbjct: 132 LANLGSLETLDLAWTPMKGTGLKHVGQIRNLRVLLLTHTKIADEHIAQIVPLTKLEKLDL 191

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
               + D+G+  ++ L NLK L   ++ +     + L+ L  L ++ LS + ++   +  
Sbjct: 192 GGTLVTDKGMEFVSRLANLKDLRCPES-LTDDATKLLARLVQLRTLCLSSSCVTSQGVES 250

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           L  LS L+SL+L   +I D  L  +T L+ L HL L    ITD+ A  +  F NL+SL +
Sbjct: 251 LKTLSELRSLDLSRTKIDDRALDQITVLSKLEHLLLSETNITDAVAPVIGRFMNLKSLFL 310

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
            G  ++D+ ++ +  + +L  LNLS+  
Sbjct: 311 DGTKISDSVLQEVGKVHTLERLNLSKTA 338



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 129/255 (50%), Gaps = 6/255 (2%)

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           +T QG +  A L  L +L L         L  L  L  LE+L++ W   +  + +K +  
Sbjct: 100 LTPQGWRKIAELRALRELYLADSNVDDEDLQYLANLGSLETLDLAW-TPMKGTGLKHVGQ 158

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           + NL+ L ++ +K+ D  IA +  L KL  L+L G  VT   ++ +S L +L  L   RC
Sbjct: 159 IRNLRVLLLTHTKIADEHIAQIVPLTKLEKLDLGGTLVTDKGMEFVSRLANLKDL---RC 215

Query: 239 Q--LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
              L+DD  +  +++  L+ L L  + +T + +  LK L+ L SL+L    I D  L  +
Sbjct: 216 PESLTDDATKLLARLVQLRTLCLSSSCVTSQGVESLKTLSELRSLDLSRTKIDDRALDQI 275

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
           T L  L+ L LS+T +  +    +    NL+S+ L  T ISD  L+++  + +L+ LNL 
Sbjct: 276 TVLSKLEHLLLSETNITDAVAPVIGRFMNLKSLFLDGTKISDSVLQEVGKVHTLERLNLS 335

Query: 357 ARQITDTGLAALTSL 371
              +T  GL  LT L
Sbjct: 336 KTAVTGEGLQHLTPL 350



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 97/183 (53%), Gaps = 2/183 (1%)

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
           SL+L    +  +G   +  L  L+ L L+D+ V    L++L+ L +LE+++L++T +   
Sbjct: 92  SLDLSHARLTPQGWRKIAELRALRELYLADSNVDDEDLQYLANLGSLETLDLAWTPMKGT 151

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ +  + +L+ L L   +I D  +A +  LT L  LDL G  +TD G  ++    NL+
Sbjct: 152 GLKHVGQIRNLRVLLLTHTKIADEHIAQIVPLTKLEKLDLGGTLVTDKGMEFVSRLANLK 211

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L  C   LTD   K +  L  L  L LS +C +T + +E +  L+ L SL++S ++I  
Sbjct: 212 DLR-CPESLTDDATKLLARLVQLRTLCLSSSC-VTSQGVESLKTLSELRSLDLSRTKIDD 269

Query: 460 AGL 462
             L
Sbjct: 270 RAL 272



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 124/277 (44%), Gaps = 35/277 (12%)

Query: 24  SLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNL 83
            L A R+  L D        V+D+ +  +A+ GS L ++DL+ + +  +GL H+    NL
Sbjct: 110 ELRALRELYLAD------SNVDDEDLQYLANLGS-LETLDLAWTPMKGTGLKHVGQIRNL 162

Query: 84  QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
           + L      +I+D  +  +  L+ L  L       +T +GM+  + L NL  L   RC  
Sbjct: 163 RVLLLTHT-KIADEHIAQIVPLTKLEKLDL-GGTLVTDKGMEFVSRLANLKDL---RCP- 216

Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
                         ESL        TD   K L+ L  L++L +S S VT  G+  LK L
Sbjct: 217 --------------ESL--------TDDATKLLARLVQLRTLCLSSSCVTSQGVESLKTL 254

Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
            +L  L+L    +    LD ++ L  L +L L+   ++D       +  +LK L L   +
Sbjct: 255 SELRSLDLSRTKIDDRALDQITVLSKLEHLLLSETNITDAVAPVIGRFMNLKSLFLDGTK 314

Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           I+D  L  +  +  LE LNL    +  EGL +LT L 
Sbjct: 315 ISDSVLQEVGKVHTLERLNLSKTAVTGEGLQHLTPLA 351


>gi|320169700|gb|EFW46599.1| protein tyrosine kinase [Capsaspora owczarzaki ATCC 30864]
          Length = 1026

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 146/343 (42%), Gaps = 5/343 (1%)

Query: 85  SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
           SL FN    I+        GL++LT ++ + NN IT      F GL ++ + DL      
Sbjct: 69  SLQFN---HITSLATNAFTGLTSLTQVTLQNNN-ITNIVATTFTGLSSVTQTDLSYNKLT 124

Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
                   GL  L  L++   N IT       S LT L  L ++ + +     +   GL 
Sbjct: 125 SLSANAFTGLTALAQLDLS-MNQITSIHATAFSDLTALTQLSLTNNIIRTIPSSAFTGLT 183

Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
            L  LNL G   TA   ++ + L +L YL+L  C ++      F+ + +L  L L  N+I
Sbjct: 184 ALNTLNLGGNLFTAIPANAFTGLSALNYLSLFACLITVISANAFTGLTALTFLTLQSNQI 243

Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
            +       GLT L+ L L S  I        T L  L  L+LS   + S      +GL+
Sbjct: 244 LNIPANAFAGLTALQFLYLSSAQITSLSANAFTDLSALTQLDLSYNMITSLSANTFTGLS 303

Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
            L  ++LS+  I+  S     GLS+L  L L   QIT     A   LT LT L LF  +I
Sbjct: 304 ALTRLDLSYNMITSLSANTFTGLSALTQLYLFENQITSIPADAFAGLTALTQLFLFENQI 363

Query: 385 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
           T   A        L  LE+    +T       + L++LT L L
Sbjct: 364 TSIPADAFAGLTALTQLELSHTRITSISANAFRGLTALTALYL 406



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 117/394 (29%), Positives = 166/394 (42%), Gaps = 34/394 (8%)

Query: 92  IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLV 149
           I I       L  L  L  LS+ +   I+AQ   AF GL  L  LDL   R T+I G L 
Sbjct: 4   ISIPANAFAGLTALQYL-ELSYNQLTGISAQ---AFTGLTALNYLDLSNNRITKIPGSL- 58

Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS--------------CSKVTDS 195
              GL  L +L++++ N IT       +GLT+L  + +                S VT +
Sbjct: 59  -FTGLTMLTTLSLQF-NHITSLATNAFTGLTSLTQVTLQNNNITNIVATTFTGLSSVTQT 116

Query: 196 GIAYLK----------GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
            ++Y K          GL  L  L+L    +T+    + S L +L  L+L    +     
Sbjct: 117 DLSYNKLTSLSANAFTGLTALAQLDLSMNQITSIHATAFSDLTALTQLSLTNNIIRTIPS 176

Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
             F+ + +L  LNLG N  T        GL+ L  L+L +C I        TGL  L  L
Sbjct: 177 SAFTGLTALNTLNLGGNLFTAIPANAFTGLSALNYLSLFACLITVISANAFTGLTALTFL 236

Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
            L   Q+ +      +GLT L+ + LS   I+  S      LS+L  L+L    IT    
Sbjct: 237 TLQSNQILNIPANAFAGLTALQFLYLSSAQITSLSANAFTDLSALTQLDLSYNMITSLSA 296

Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
              T L+ LT LDL    IT   A        L  L +    +T         L++LT L
Sbjct: 297 NTFTGLSALTRLDLSYNMITSLSANTFTGLSALTQLYLFENQITSIPADAFAGLTALTQL 356

Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L +N  +T    +  +GLT L  L +S++RITS
Sbjct: 357 FLFEN-QITSIPADAFAGLTALTQLELSHTRITS 389



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 100/243 (41%), Gaps = 25/243 (10%)

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
           QL       F+ + +L+ L L +N++T        GLT L  L+L +  I        TG
Sbjct: 2   QLISIPANAFAGLTALQYLELSYNQLTGISAQAFTGLTALNYLDLSNNRITKIPGSLFTG 61

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-----------SFTGIS-----DGSLR 342
           L  L  L L    + S      +GLT+L  + L           +FTG+S     D S  
Sbjct: 62  LTMLTTLSLQFNHITSLATNAFTGLTSLTQVTLQNNNITNIVATTFTGLSSVTQTDLSYN 121

Query: 343 KL--------AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
           KL         GL++L  L+L   QIT     A + LT LT L L    I    ++    
Sbjct: 122 KLTSLSANAFTGLTALAQLDLSMNQITSIHATAFSDLTALTQLSLTNNIIRTIPSSAFTG 181

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
              L +L + G   T         LS+L  L+L   C +T  +    +GLT L  L + +
Sbjct: 182 LTALNTLNLGGNLFTAIPANAFTGLSALNYLSLFA-CLITVISANAFTGLTALTFLTLQS 240

Query: 455 SRI 457
           ++I
Sbjct: 241 NQI 243


>gi|290985429|ref|XP_002675428.1| predicted protein [Naegleria gruberi]
 gi|284089024|gb|EFC42684.1| predicted protein [Naegleria gruberi]
          Length = 451

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 165/338 (48%), Gaps = 32/338 (9%)

Query: 160 LNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
           +N+ + + + DS  + K +S +  L SL IS + + D     +  +++LT L++    + 
Sbjct: 110 VNVTYSDWLLDSFEEAKFISKMKQLTSLSISGNGIGDEEAKLISEMKQLTSLDISANLIG 169

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
                 LS +  L  LN+ + ++ D+G +  S++  L  L++ + ++  E    ++ +  
Sbjct: 170 DEGAKYLSEMKQLISLNIGKNEI-DEGAKYISEMKQLASLDISYTQVDVEGAKCIREMRQ 228

Query: 278 LESLNLDSCG--IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
           L SLN+  CG  IG EG+  ++ +  L  L + ++ +G  G + +S +  L S+N+S   
Sbjct: 229 LTSLNI--CGNRIGIEGVKLISEMRQLTSLNIGESDIGIEGTKLISEMKQLTSLNISNNL 286

Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
           I D   + ++ +  L SLN+ A +I + G   ++ +  L  L++   RI   G   +   
Sbjct: 287 IGDEGAKLISEMKQLISLNIRANRIVNQGAKFISEMRQLRSLNISNNRIGIEGVKLISEM 346

Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS------------- 442
           K L SL I    +++ G K I ++  LTLLN+S N  + D+  +LIS             
Sbjct: 347 KQLISLNIRSNRISNEGTKLISEMRQLTLLNISNN-EIGDEETKLISEMKQLKSLDISYN 405

Query: 443 --GLTG---------LVSLNVSNSRITSAGLRHLNHAR 469
             G+ G         L SLN++++RI   G + ++  +
Sbjct: 406 QIGIEGAKLISEMKQLTSLNIADNRIGGEGAKLISEMK 443



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 150/302 (49%), Gaps = 13/302 (4%)

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
           + +L SL+I   N I D   K LS +  L SL I  +++ D G  Y+  +++L  L++  
Sbjct: 155 MKQLTSLDIS-ANLIGDEGAKYLSEMKQLISLNIGKNEI-DEGAKYISEMKQLASLDISY 212

Query: 214 CPVT---AACLDSLSALGSLFYLNLNRC--QLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
             V    A C+  +  L SL     N C  ++  +G +  S++  L  LN+G ++I  E 
Sbjct: 213 TQVDVEGAKCIREMRQLTSL-----NICGNRIGIEGVKLISEMRQLTSLNIGESDIGIEG 267

Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
              +  +  L SLN+ +  IGDEG   ++ +  L  L +   ++ + G + +S +  L S
Sbjct: 268 TKLISEMKQLTSLNISNNLIGDEGAKLISEMKQLISLNIRANRIVNQGAKFISEMRQLRS 327

Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
           +N+S   I    ++ ++ +  L SLN+ + +I++ G   ++ +  LT L++    I D  
Sbjct: 328 LNISNNRIGIEGVKLISEMKQLISLNIRSNRISNEGTKLISEMRQLTLLNISNNEIGDEE 387

Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
              +   K L+SL+I    +   G K I ++  LT LN++ N  +  +  +LIS +  L 
Sbjct: 388 TKLISEMKQLKSLDISYNQIGIEGAKLISEMKQLTSLNIADN-RIGGEGAKLISEMKQLT 446

Query: 449 SL 450
           S+
Sbjct: 447 SI 448



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 150/323 (46%), Gaps = 3/323 (0%)

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
           +  LTSLS    N I  +  K  + +  L  LD+        G   L  + +L SLNI  
Sbjct: 131 MKQLTSLSIS-GNGIGDEEAKLISEMKQLTSLDISANLIGDEGAKYLSEMKQLISLNIGK 189

Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
                D   K +S +  L SL IS ++V   G   ++ +++LT LN+ G  +    +  +
Sbjct: 190 NEI--DEGAKYISEMKQLASLDISYTQVDVEGAKCIREMRQLTSLNICGNRIGIEGVKLI 247

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
           S +  L  LN+    +  +G +  S++  L  LN+  N I DE    +  +  L SLN+ 
Sbjct: 248 SEMRQLTSLNIGESDIGIEGTKLISEMKQLTSLNISNNLIGDEGAKLISEMKQLISLNIR 307

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
           +  I ++G   ++ +  L+ L +S+ ++G  G++ +S +  L S+N+    IS+   + +
Sbjct: 308 ANRIVNQGAKFISEMRQLRSLNISNNRIGIEGVKLISEMKQLISLNIRSNRISNEGTKLI 367

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
           + +  L  LN+   +I D     ++ +  L  LD+   +I   GA  +   K L SL I 
Sbjct: 368 SEMRQLTLLNISNNEIGDEETKLISEMKQLKSLDISYNQIGIEGAKLISEMKQLTSLNIA 427

Query: 405 GGGLTDAGVKHIKDLSSLTLLNL 427
              +   G K I ++  LT + L
Sbjct: 428 DNRIGGEGAKLISEMKQLTSITL 450



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 176/407 (43%), Gaps = 39/407 (9%)

Query: 6   ISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPG--VNDKWMDVI---------AS 54
           IS+Q FN +     LT    + F    +Q     Q+    VN  + D +          S
Sbjct: 70  ISKQFFNVIKERSKLTIQFKKKFTKKRVQLFLKSQFMNCIVNVTYSDWLLDSFEEAKFIS 129

Query: 55  QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
           +   L S+ +SG+ + D     + +   L SLD +  + I D G ++L  +  L SL+  
Sbjct: 130 KMKQLTSLSISGNGIGDEEAKLISEMKQLTSLDISANL-IGDEGAKYLSEMKQLISLNIG 188

Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
           +N     +G K  + +  L  LD+                     ++++   CI +    
Sbjct: 189 KNE--IDEGAKYISEMKQLASLDISYT-----------------QVDVEGAKCIRE---- 225

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
               +  L SL I  +++   G+  +  +++LT LN+    +       +S +  L  LN
Sbjct: 226 ----MRQLTSLNICGNRIGIEGVKLISEMRQLTSLNIGESDIGIEGTKLISEMKQLTSLN 281

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           ++   + D+G +  S++  L  LN+  N I ++    +  +  L SLN+ +  IG EG+ 
Sbjct: 282 ISNNLIGDEGAKLISEMKQLISLNIRANRIVNQGAKFISEMRQLRSLNISNNRIGIEGVK 341

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
            ++ +  L  L +   ++ + G + +S +  L  +N+S   I D   + ++ +  LKSL+
Sbjct: 342 LISEMKQLISLNIRSNRISNEGTKLISEMRQLTLLNISNNEIGDEETKLISEMKQLKSLD 401

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
           +   QI   G   ++ +  LT L++   RI   GA  +   K L S+
Sbjct: 402 ISYNQIGIEGAKLISEMKQLTSLNIADNRIGGEGAKLISEMKQLTSI 448



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 149/313 (47%), Gaps = 29/313 (9%)

Query: 43  GVNDKWMDVIASQGSSLLSVDLSGSDV-----------------------TDSGLIHLKD 79
           G+ D+   +I S+   L S+D+S + +                        D G  ++ +
Sbjct: 143 GIGDEEAKLI-SEMKQLTSLDISANLIGDEGAKYLSEMKQLISLNIGKNEIDEGAKYISE 201

Query: 80  CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL- 138
              L SLD ++  Q+   G + +R +  LTSL+    N I  +G+K  + +  L  L++ 
Sbjct: 202 MKQLASLDISYT-QVDVEGAKCIREMRQLTSLNI-CGNRIGIEGVKLISEMRQLTSLNIG 259

Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
           E    I G  + +  + +L SLNI   N I D   K +S +  L SL I  +++ + G  
Sbjct: 260 ESDIGIEGTKL-ISEMKQLTSLNIS-NNLIGDEGAKLISEMKQLISLNIRANRIVNQGAK 317

Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
           ++  +++L  LN+    +    +  +S +  L  LN+   ++S++G +  S++  L +LN
Sbjct: 318 FISEMRQLRSLNISNNRIGIEGVKLISEMKQLISLNIRSNRISNEGTKLISEMRQLTLLN 377

Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
           +  NEI DE    +  +  L+SL++    IG EG   ++ +  L  L ++D ++G  G +
Sbjct: 378 ISNNEIGDEETKLISEMKQLKSLDISYNQIGIEGAKLISEMKQLTSLNIADNRIGGEGAK 437

Query: 319 HLSGLTNLESINL 331
            +S +  L SI L
Sbjct: 438 LISEMKQLTSITL 450


>gi|434405929|ref|YP_007148814.1| Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum
           stagnale PCC 7417]
 gi|428260184|gb|AFZ26134.1| Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum
           stagnale PCC 7417]
          Length = 384

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 99/290 (34%), Positives = 157/290 (54%), Gaps = 23/290 (7%)

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
           D+KPLS LTNL  + I  +++ D  I  L  L KL  LNL       + +  LS L +L 
Sbjct: 107 DIKPLSNLTNLTGINIYYNQIID--IKPLSNLTKLIYLNLIKN--EFSDIKPLSNLTNLI 162

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
           YL L+R Q++D   +  S + +L  L+L  N+I+D  +  L  LT L  L L    I D 
Sbjct: 163 YLGLSRNQIND--IKPLSNLTNLTTLDLIENKISD--IEPLSNLTKLTYLTLIENKISD- 217

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
            +  L+ L NL  L L + ++  S ++HLS LT L  + LS   ISD  ++ L+ L++L 
Sbjct: 218 -IKPLSNLTNLTALYLWNNEI--SDIKHLSNLTKLTYLLLSENKISD--IKPLSNLTNLT 272

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
           SL LD  QI+D  +  L++LT LT+L+L   +I+D     L N  NL SL +    +  +
Sbjct: 273 SLGLDENQISD--IKPLSNLTNLTYLNLGLNQISDIKV--LSNLTNLTSLYLDYNQI--S 326

Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
            ++ + +L++LT ++L  N  ++D  ++ +S +T L  L + N+ I    
Sbjct: 327 NIQPLFNLNNLTKIDLDYN-QISD--IKPLSNMTKLEKLEIQNNPIPDKA 373



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 83/245 (33%), Positives = 133/245 (54%), Gaps = 25/245 (10%)

Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
           T  C  +   L  L  L L   ++SD   +  S + +L  L+LGFN+I D  +  L  LT
Sbjct: 60  TQNCNQANQKLTQLKELKLGSNKISD--IKPLSNLNNLIYLDLGFNQIID--IKPLSNLT 115

Query: 277 NLESLNLDSCGIGD-EGLVNLTGLCNLKCL--ELSDTQVGSSGLRHLSGLTNLESINLSF 333
           NL  +N+    I D + L NLT L  L  +  E SD       ++ LS LTNL  + LS 
Sbjct: 116 NLTGINIYYNQIIDIKPLSNLTKLIYLNLIKNEFSD-------IKPLSNLTNLIYLGLSR 168

Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
             I+D  ++ L+ L++L +L+L   +I+D  +  L++LT LT+L L   +I+D     L 
Sbjct: 169 NQIND--IKPLSNLTNLTTLDLIENKISD--IEPLSNLTKLTYLTLIENKISDIKP--LS 222

Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
           N  NL +L +    ++D  +KH+ +L+ LT L LS+N  ++D  ++ +S LT L SL + 
Sbjct: 223 NLTNLTALYLWNNEISD--IKHLSNLTKLTYLLLSEN-KISD--IKPLSNLTNLTSLGLD 277

Query: 454 NSRIT 458
            ++I+
Sbjct: 278 ENQIS 282



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 118/270 (43%), Gaps = 52/270 (19%)

Query: 63  DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
           +L+G ++  + +I +K  SNL  L +   I+     ++ L  L+NL  L   RN      
Sbjct: 116 NLTGINIYYNQIIDIKPLSNLTKLIYLNLIKNEFSDIKPLSNLTNLIYLGLSRNQI---N 172

Query: 123 GMKAFAGLINLVKLDL-----------------ERCTRIHGGLVNLKGLMKLESLN--IK 163
            +K  + L NL  LDL                    T I   + ++K L  L +L     
Sbjct: 173 DIKPLSNLTNLTTLDLIENKISDIEPLSNLTKLTYLTLIENKISDIKPLSNLTNLTALYL 232

Query: 164 WCNCITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
           W N I+D                    SD+KPLS LTNL SL +  ++++D  I  L  L
Sbjct: 233 WNNEISDIKHLSNLTKLTYLLLSENKISDIKPLSNLTNLTSLGLDENQISD--IKPLSNL 290

Query: 204 QKLTLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
             LT LNL    ++    L +L+ L SL YL+ N+        +    + +L  ++L +N
Sbjct: 291 TNLTYLNLGLNQISDIKVLSNLTNLTSL-YLDYNQIS----NIQPLFNLNNLTKIDLDYN 345

Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           +I+D  +  L  +T LE L + +  I D+ 
Sbjct: 346 QISD--IKPLSNMTKLEKLEIQNNPIPDKA 373



 Score = 39.7 bits (91), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 72  SGLIHLKDCSNLQSL--DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
           S +  L + +NL SL  D N   QISD     ++ LSNLT+L++          +K  + 
Sbjct: 260 SDIKPLSNLTNLTSLGLDEN---QISD-----IKPLSNLTNLTYLNLGLNQISDIKVLSN 311

Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
           L NL  L L+     +  + N++ L  L +L     +    SD+KPLS +T L+ L+I  
Sbjct: 312 LTNLTSLYLD-----YNQISNIQPLFNLNNLTKIDLDYNQISDIKPLSNMTKLEKLEIQN 366

Query: 190 SKVTDSGIAYLK 201
           + + D    ++ 
Sbjct: 367 NPIPDKACPFIP 378


>gi|62632752|ref|NP_001015043.1| F-box and leucine-rich repeat protein 14b [Danio rerio]
 gi|190338219|gb|AAI63001.1| F-box and leucine-rich repeat protein 14b [Danio rerio]
 gi|190338703|gb|AAI63002.1| F-box and leucine-rich repeat protein 14b [Danio rerio]
          Length = 400

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 109/327 (33%), Positives = 170/327 (51%), Gaps = 32/327 (9%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
           RG+  +  LS RR+ +   QGM       N+  L+L  C  +     G   ++ +  L  
Sbjct: 68  RGIRRVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 121

Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPV 216
           LN+  C  ITDS +  ++  L NL+ L++  CS +T++G+  +  GL +L  LNL  C  
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRH 181

Query: 217 TA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
            +       A +   +A G  SL YL L  CQ L+D   +  SK +  LKVLNL F   I
Sbjct: 182 VSDVGIGHLAGMTRSAAEGCLSLEYLTLQDCQKLTDLSLKHISKGLTKLKVLNLSFCGGI 241

Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS 321
           +D  ++HL  +T+L SLNL SC  I D G+++L  G   L  L++S   ++G   L +++
Sbjct: 242 SDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLAYIA 301

Query: 322 -GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHL 377
            GL  L+S++L    ISD  + R +  +  L++LN+    +ITD GL  +   LT LT +
Sbjct: 302 QGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLTGI 361

Query: 378 DLFG-ARITDSGAAYLRNFKNLRSLEI 403
           DL+G  +IT  G   +     L+ L +
Sbjct: 362 DLYGCTKITKRGLERITQLPCLKVLNL 388



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 103/317 (32%), Positives = 170/317 (53%), Gaps = 48/317 (15%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           + G+ N++SL +S C  +TD+G+  A+++ +  L +LNL  C                  
Sbjct: 86  IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCK----------------- 128

Query: 233 LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GI 288
                 Q++D    + ++ + +L+VL LG  + IT+  L+ +  GL  L+SLNL SC  +
Sbjct: 129 ------QITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHV 182

Query: 289 GDEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-IS 337
            D G+ +L G+         +L+ L L D Q +    L+H+S GLT L+ +NLSF G IS
Sbjct: 183 SDVGIGHLAGMTRSAAEGCLSLEYLTLQDCQKLTDLSLKHISKGLTKLKVLNLSFCGGIS 242

Query: 338 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-GLTHLDL-FGARITDSGAAYL-R 393
           D  +  L+ ++SL SLNL +   I+DTG+  L   T  L+ LD+ F  +I D   AY+ +
Sbjct: 243 DAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLAYIAQ 302

Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  LT L  ++
Sbjct: 303 GLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLTGID 362

Query: 452 VSN-SRITSAGLRHLNH 467
           +   ++IT  GL  +  
Sbjct: 363 LYGCTKITKRGLERITQ 379



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 168/308 (54%), Gaps = 26/308 (8%)

Query: 81  SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLD 137
            N++SL+ + C  ++D GL H  ++ + +L  L+      IT   +   A  L NL  L+
Sbjct: 90  PNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLGRIAQYLKNLEVLE 149

Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLKSLQI 187
           L  C+ I   G L+   GL +L+SLN++ C  ++D  +  L+G+T        +L+ L +
Sbjct: 150 LGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLSLEYLTL 209

Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDD 243
             C K+TD  + ++ KGL KL +LNL  C  ++ A +  LS + SL+ LNL  C  +SD 
Sbjct: 210 QDCQKLTDLSLKHISKGLTKLKVLNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDT 269

Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-G 298
           G    + +G+L++  L++ F ++I D+ L ++ +GL  L+SL+L SC I D+G+  +   
Sbjct: 270 GIMHLA-MGTLRLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQ 328

Query: 299 LCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 355
           +  L+ L +    ++   GL  ++  LT L  I+L   T I+   L ++  L  LK LNL
Sbjct: 329 MHELRTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNL 388

Query: 356 DARQITDT 363
              Q+T++
Sbjct: 389 GLWQMTES 396



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 143/286 (50%), Gaps = 33/286 (11%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
           + D  +  IA    +L  ++L G S++T++GL+ +      L+SL+   C  +SD G+ H
Sbjct: 130 ITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGH 189

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
           L G++                   A  G ++L  L L+ C ++    L ++ KGL KL+ 
Sbjct: 190 LAGMTR-----------------SAAEGCLSLEYLTLQDCQKLTDLSLKHISKGLTKLKV 232

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
           LN+ +C  I+D+ M  LS +T+L SL + SC  ++D+GI +L  G  +L+ L++  C   
Sbjct: 233 LNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKI 292

Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVH 271
                SL+ +    Y    L+L  C +SDDG  +  + +  L+ LN+G    ITD+ L  
Sbjct: 293 GD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLEL 350

Query: 272 LK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
           +   LT L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 351 IADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTES 396


>gi|359464005|ref|ZP_09252568.1| internalin A protein [Acaryochloris sp. CCMEE 5410]
          Length = 624

 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 146/513 (28%), Positives = 237/513 (46%), Gaps = 96/513 (18%)

Query: 23  VSLEAFRDCALQDLCLGQYPGVNDKWM-DVIASQGSSLLS------VDLSGSDVTDSGLI 75
           +SL+      L D  + QYP ++  ++ D+++ +     S      + LSG DVT +   
Sbjct: 55  LSLQGVDGHELVDASIEQYPHLSALYLFDIVSPEIVPFASLPGLSTIALSGQDVTATS-- 112

Query: 76  HLKDCSNLQSL--------DFNFCI-------------QISDGGLEHLRGLSNLTSLSFR 114
           +L+  +NL ++        D++F               QI+D  +  ++ L  LTSL   
Sbjct: 113 YLQQATNLTTVYLKTTHISDYSFLSDLKNLTHLDLSNNQIAD--ISFIQDLKQLTSLGLA 170

Query: 115 RNNAITAQGMK----------------AFAGLINLVKL-DLERCTRIHGGLVNLKGLMKL 157
            N  +   G+K                 ++ L+N  +L  L    R   GL  L+ L  L
Sbjct: 171 ANKIVDISGLKDLTTLNSLNLRSNAIDDYSVLLNFKELSQLTVSVREATGLAFLQDLRGL 230

Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
             L++ + + I  SD+  L  L  L  L +  ++++D  IA L  L +LT L+L    ++
Sbjct: 231 TYLDLSYNHWI--SDISVLRHLPKLTHLDLGSNQISD--IAVLSDLPQLTHLSLSANKIS 286

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
              L  L  L  L  L+++  +++D        +  L  L++  N+++D  +  L+ LT 
Sbjct: 287 D--LSVLQTLQGLESLDISANEIADIAI--LQNLQGLTQLDISSNDVSD--ISALQDLTT 340

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           L  LN+ S  + D  +  L GL  L  L++SD Q+  S +  L GL  L S+NLS+  +S
Sbjct: 341 LTQLNVSSNEVIDYSV--LQGLTELTNLDVSDNQL--SEISDLQGLHALTSLNLSYNQLS 396

Query: 338 DGS----LRKLAGLS----------------SLKSLNLDARQITDTGLAALTSLTGLTHL 377
           D S    L++LA L+                 L +LNL   QITD  L+ L  L GLT L
Sbjct: 397 DISVLQDLKQLATLNLSYNPVSDIAVLQNFKDLTTLNLSFTQITD--LSTLQGLKGLTSL 454

Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
           DL   +I D  A  L++ K L  L +    L+D  +  +++L  L  LNLS N  ++D  
Sbjct: 455 DLHSNQIRDISA--LQDLKGLYRLNVSDNQLSD--ISALRNLKGLFSLNLSIN-QISD-- 507

Query: 438 LELISGLTGLVSLNVSNSRITS----AGLRHLN 466
           +  +  LT L SLN S++R++      GL  LN
Sbjct: 508 IAALQDLTRLTSLNASHNRLSDISVLQGLTRLN 540



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 130/414 (31%), Positives = 187/414 (45%), Gaps = 64/414 (15%)

Query: 72  SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
           +GL  L+D   L  LD ++   ISD  +  LR L  LT L    N       +   + L 
Sbjct: 219 TGLAFLQDLRGLTYLDLSYNHWISDISV--LRHLPKLTHLDLGSNQI---SDIAVLSDLP 273

Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD--------------------S 171
            L  L L    +I   L  L+ L  LESL+I   N I D                    S
Sbjct: 274 QLTHLSLS-ANKI-SDLSVLQTLQGLESLDIS-ANEIADIAILQNLQGLTQLDISSNDVS 330

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
           D+  L  LT L  L +S ++V D  +  L+GL +LT  NL+      + +  L  L +L 
Sbjct: 331 DISALQDLTTLTQLNVSSNEVIDYSV--LQGLTELT--NLDVSDNQLSEISDLQGLHALT 386

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
            LNL+  QLSD        +  L  LNL +N ++D  +  L+   +L +LNL    I D 
Sbjct: 387 SLNLSYNQLSD--ISVLQDLKQLATLNLSYNPVSDIAV--LQNFKDLTTLNLSFTQITD- 441

Query: 292 GLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
            L  L GL  L  L+L   Q+   S L+ L GL  L         +SD  L  ++ L +L
Sbjct: 442 -LSTLQGLKGLTSLDLHSNQIRDISALQDLKGLYRL--------NVSDNQLSDISALRNL 492

Query: 351 K---SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
           K   SLNL   QI+D  +AAL  LT LT L+    R++D   + L+    L SL++    
Sbjct: 493 KGLFSLNLSINQISD--IAALQDLTRLTSLNASHNRLSD--ISVLQGLTRLNSLDLGANQ 548

Query: 408 LTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
           + D  V ++I  L SL L         +D  + +     GL SLN+S+++I+S 
Sbjct: 549 IADISVLQNIPGLFSLDL-------RFSD--VSVFQDFKGLTSLNLSSNQISSV 593



 Score = 41.6 bits (96), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 19/180 (10%)

Query: 261 FNEITDECLVHLKGLTNLESLN-------LDSCGIGDEGLVN--LTGLCNLKCLELSDTQ 311
           FN+  ++   HL+   N  +LN       L   G+    LV+  +    +L  L L D  
Sbjct: 26  FNQSLNDTYHHLQRQPNAYALNDEHQIVGLSLQGVDGHELVDASIEQYPHLSALYLFD-- 83

Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
           + S  +   + L  L +I LS   ++  S  + A  ++L ++ L    I+D     L+ L
Sbjct: 84  IVSPEIVPFASLPGLSTIALSGQDVTATSYLQQA--TNLTTVYLKTTHISDYSF--LSDL 139

Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
             LTHLDL   +I D   +++++ K L SL +    + D  +  +KDL++L  LNL  N 
Sbjct: 140 KNLTHLDLSNNQIAD--ISFIQDLKQLTSLGLAANKIVD--ISGLKDLTTLNSLNLRSNA 195


>gi|149174147|ref|ZP_01852775.1| hypothetical protein PM8797T_13198 [Planctomyces maris DSM 8797]
 gi|148847127|gb|EDL61462.1| hypothetical protein PM8797T_13198 [Planctomyces maris DSM 8797]
          Length = 476

 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/198 (33%), Positives = 105/198 (53%), Gaps = 20/198 (10%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           + +TD  ++  +    +  L +S SKVTD+GI YL+G  +L  LNL G  VT A L+ L 
Sbjct: 265 SAVTDQILRDFNYWNKVSGLWLSRSKVTDAGIEYLRGATRLYSLNLSGTEVTDATLEHLK 324

Query: 226 ALGSLFYLNLNRCQLSDDGC-EKFSKIGSLKV-----------------LNLGFNEITDE 267
            L  L  +NL   Q+S  G  E  +   S+++                 L L    +T E
Sbjct: 325 GLPELHSVNLRGTQVSPRGVLELIASSDSMQIAFPGGWVWKLENAHGFQLKLSSPAVTGE 384

Query: 268 CLVHLKGLTNLES-LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
            L+ L G   +++ L+LD   + DEGL +L G  +L+ L +S+TQ+ S+GL HL+GL +L
Sbjct: 385 -LLKLFGTVRVQAYLDLDGIALTDEGLASLGGFEDLRTLRISNTQISSAGLNHLAGLASL 443

Query: 327 ESINLSFTGISDGSLRKL 344
             ++L  + ++D  + KL
Sbjct: 444 RELDLRGSAVADEDINKL 461



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 98/196 (50%), Gaps = 6/196 (3%)

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
           + +L    ++D     F+    +  L L  +++TD  + +L+G T L SLNL    + D 
Sbjct: 259 FESLGHSAVTDQILRDFNYWNKVSGLWLSRSKVTDAGIEYLRGATRLYSLNLSGTEVTDA 318

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
            L +L GL  L  + L  TQV   G+  L  + + +S+ ++F G   G + KL      +
Sbjct: 319 TLEHLKGLPELHSVNLRGTQVSPRGVLEL--IASSDSMQIAFPG---GWVWKLENAHGFQ 373

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
            L L +  +T   L    ++    +LDL G  +TD G A L  F++LR+L I    ++ A
Sbjct: 374 -LKLSSPAVTGELLKLFGTVRVQAYLDLDGIALTDEGLASLGGFEDLRTLRISNTQISSA 432

Query: 412 GVKHIKDLSSLTLLNL 427
           G+ H+  L+SL  L+L
Sbjct: 433 GLNHLAGLASLRELDL 448



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 115/246 (46%), Gaps = 23/246 (9%)

Query: 22  EVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCS 81
           E+S+  FRD   + L    +  V D+ +    +  + +  + LS S VTD+G+ +L+  +
Sbjct: 248 EISMVEFRDTGFESLG---HSAVTDQILRDF-NYWNKVSGLWLSRSKVTDAGIEYLRGAT 303

Query: 82  NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
            L SL+ +   +++D  LEHL+GL  L S++ R           +  G++ L+       
Sbjct: 304 RLYSLNLS-GTEVTDATLEHLKGLPELHSVNLRGTQV-------SPRGVLELIASSDSMQ 355

Query: 142 TRIHGGLVNLKGLMKLES---LNIKWCNCITDSDMKPLSGLTNLKS-LQISCSKVTDSGI 197
               GG V      KLE+     +K  +     ++  L G   +++ L +    +TD G+
Sbjct: 356 IAFPGGWV-----WKLENAHGFQLKLSSPAVTGELLKLFGTVRVQAYLDLDGIALTDEGL 410

Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
           A L G + L  L +    +++A L+ L+ L SL  L+L    ++D+   K  +  +L   
Sbjct: 411 ASLGGFEDLRTLRISNTQISSAGLNHLAGLASLRELDLRGSAVADEDINKLQR--ALPNC 468

Query: 258 NLGFNE 263
            + +NE
Sbjct: 469 KIDWNE 474



 Score = 42.7 bits (99), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 51/111 (45%)

Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
           +FT I+ G    +         +L    +TD  L        ++ L L  +++TD+G  Y
Sbjct: 239 AFTTIAAGDEISMVEFRDTGFESLGHSAVTDQILRDFNYWNKVSGLWLSRSKVTDAGIEY 298

Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
           LR    L SL + G  +TDA ++H+K L  L  +NL          LELI+
Sbjct: 299 LRGATRLYSLNLSGTEVTDATLEHLKGLPELHSVNLRGTQVSPRGVLELIA 349


>gi|344174745|emb|CCA86555.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
           syzygii R24]
          Length = 468

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 160/360 (44%), Gaps = 31/360 (8%)

Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC----ITDSDMKPLSGLTNLKSLQIS 188
           L +LDL RC     G +   G+  L  L +   N     I     + L+    L SL +S
Sbjct: 76  LKELDLSRCR----GPITAAGIAHLSRLPLVRLNVRDKRIGAEGARRLANHPTLTSLDVS 131

Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
             ++   G   L    KLT L++    + A    +L+A  +L  L+++   + ++G    
Sbjct: 132 NGRIGPEGARALADNTKLTTLSVSHNRIGAEGAKALAASKTLTSLDISENGIGNEGACAL 191

Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
           +    L  LN+  N+I  E    L     L SL++    IGDEG+  L     L  L + 
Sbjct: 192 ATNAKLTTLNVNRNQIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVE 251

Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
            T+VG+ G+  L+    L S+ +    I D   R LA  +SL +L++++  I+  G  AL
Sbjct: 252 RTRVGADGVGALAASKTLTSLRIDSNTIGDAGARALATNTSLTTLHIESNGISPAGAQAL 311

Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
            + T LT L+L    I D+GA        L SL +   GL+DAG   +    +LT L+  
Sbjct: 312 AANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRSGLSDAGATTLAASKTLTTLDAG 371

Query: 429 QN-----------CNLTDKTLEL------------ISGLTGLVSLNVSNSRITSAGLRHL 465
            N            N T  TL++            ++  T L SL++ N+R+T AG+R L
Sbjct: 372 DNTIRDAGARALAANRTLTTLDVRSNEIENAGARALAANTRLASLDLRNNRVTKAGVRAL 431



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 111/384 (28%), Positives = 168/384 (43%), Gaps = 30/384 (7%)

Query: 81  SNLQSLDFNFCI-QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
           ++L+ LD + C   I+  G+ HL  L  L  L+ R +  I A+G +  A    L  LD+ 
Sbjct: 74  ASLKELDLSRCRGPITAAGIAHLSRLP-LVRLNVR-DKRIGAEGARRLANHPTLTSLDVS 131

Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
                  G   L    KL +L++   N I     K L+    L SL IS + + + G   
Sbjct: 132 NGRIGPEGARALADNTKLTTLSVS-HNRIGAEGAKALAASKTLTSLDISENGIGNEGACA 190

Query: 200 LKGLQKLTLLNL-------EGCPVTAA-----CLD------------SLSALGSLFYLNL 235
           L    KLT LN+       EG    AA      LD            +L+A   L  LN+
Sbjct: 191 LATNAKLTTLNVNRNQIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTTLNV 250

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
            R ++  DG    +   +L  L +  N I D     L   T+L +L+++S GI   G   
Sbjct: 251 ERTRVGADGVGALAASKTLTSLRIDSNTIGDAGARALATNTSLTTLHIESNGISPAGAQA 310

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           L     L  L L    +G +G +  S  T L S+++  +G+SD     LA   +L +L+ 
Sbjct: 311 LAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRSGLSDAGATTLAASKTLTTLDA 370

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
               I D G  AL +   LT LD+    I ++GA  L     L SL++    +T AGV+ 
Sbjct: 371 GDNTIRDAGARALAANRTLTTLDVRSNEIENAGARALAANTRLASLDLRNNRVTKAGVRA 430

Query: 416 IKDLSSLTLLNLSQNCNLTDKTLE 439
           +  L++ TL +L  + N   K +E
Sbjct: 431 L--LANRTLSSLGVSFNYCSKQIE 452



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 3/230 (1%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           + G +L S+D+ G+D+ D G+  L   + L +L+     ++   G+  L     LTSL  
Sbjct: 216 AAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVERT-RVGADGVGALAASKTLTSLRI 274

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
             +N I   G +A A   +L  L +E       G   L     L +LN+ + N I D+  
Sbjct: 275 -DSNTIGDAGARALATNTSLTTLHIESNGISPAGAQALAANTTLTTLNLGY-NGIGDAGA 332

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           +  S  T L SL +  S ++D+G   L   + LT L+     +  A   +L+A  +L  L
Sbjct: 333 QAWSANTTLISLSVRRSGLSDAGATTLAASKTLTTLDAGDNTIRDAGARALAANRTLTTL 392

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           ++   ++ + G    +    L  L+L  N +T   +  L     L SL +
Sbjct: 393 DVRSNEIENAGARALAANTRLASLDLRNNRVTKAGVRALLANRTLSSLGV 442


>gi|290974572|ref|XP_002670019.1| leucine-rich repeat protein [Naegleria gruberi]
 gi|284083573|gb|EFC37275.1| leucine-rich repeat protein [Naegleria gruberi]
          Length = 334

 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 109/189 (57%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N I D  +K +S L  L SL +S +++ D G+  +  L++LT L++    + A  + S+S
Sbjct: 145 NGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSLDISLNDIGAEGVKSIS 204

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            +  L  LN+N  ++ D+G +  S++  L  LN+  N I DE +  +  +  L SLN+ +
Sbjct: 205 EMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGVKLISEMKQLTSLNISN 264

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
            GIGDEG+ +++ L  L  L +S+ ++G+ G + +S +  L S+++++  I D  ++ ++
Sbjct: 265 NGIGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSLSINYNQIGDEGVKSIS 324

Query: 346 GLSSLKSLN 354
            +  L SLN
Sbjct: 325 DMKQLTSLN 333



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 100/187 (53%)

Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
           + D+G +  S++  L  LN+  N I DE +  +  L  L SL++    IG EG+ +++ +
Sbjct: 147 IGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSLDISLNDIGAEGVKSISEM 206

Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
             L  L ++  ++G  G++ +S L  L S+N+S  GI D  ++ ++ +  L SLN+    
Sbjct: 207 KQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGVKLISEMKQLTSLNISNNG 266

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
           I D G+ +++ L  LT L++   RI   GA  +   K L SL I    + D GVK I D+
Sbjct: 267 IGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSLSINYNQIGDEGVKSISDM 326

Query: 420 SSLTLLN 426
             LT LN
Sbjct: 327 KQLTSLN 333



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 106/195 (54%), Gaps = 1/195 (0%)

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           +  L SL +   GIGDEG+  ++ L  L  L +S+ ++G  G++ +S L  L S+++S  
Sbjct: 134 MKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSLDISLN 193

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            I    ++ ++ +  L SLN++  +I D G+  ++ L  LT L++    I D G   +  
Sbjct: 194 DIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGVKLISE 253

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
            K L SL I   G+ D GVK I +L  LT LN+S N  +  +  + IS +  L SL+++ 
Sbjct: 254 MKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNN-RIGAEGAKSISEMKQLTSLSINY 312

Query: 455 SRITSAGLRHLNHAR 469
           ++I   G++ ++  +
Sbjct: 313 NQIGDEGVKSISDMK 327



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 111/205 (54%)

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           K +S +  L SL IS + + D G+  +  L++LT LN+    +    +  +S L  L  L
Sbjct: 129 KFISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSL 188

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +++   +  +G +  S++  L  LN+ +N I DE +  +  L  L SLN+ + GIGDEG+
Sbjct: 189 DISLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGV 248

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
             ++ +  L  L +S+  +G  G++ +S L  L S+N+S   I     + ++ +  L SL
Sbjct: 249 KLISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSL 308

Query: 354 NLDARQITDTGLAALTSLTGLTHLD 378
           +++  QI D G+ +++ +  LT L+
Sbjct: 309 SINYNQIGDEGVKSISDMKQLTSLN 333



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 96/174 (55%), Gaps = 1/174 (0%)

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           ++ +  L  L +SD  +G  G++ +S L  L S+N+S   I D  ++ ++ L  L SL++
Sbjct: 131 ISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSLDI 190

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
               I   G+ +++ +  LT L++   RI D G   +   K L SL I   G+ D GVK 
Sbjct: 191 SLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGVKL 250

Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           I ++  LT LN+S N  + D+ ++ IS L  L SLN+SN+RI + G + ++  +
Sbjct: 251 ISEMKQLTSLNISNNG-IGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMK 303



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 109/206 (52%), Gaps = 2/206 (0%)

Query: 247 KF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
           KF S++  L  L +  N I DE +  +  L  L SLN+ +  IGDEG+  ++ L  L  L
Sbjct: 129 KFISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSL 188

Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
           ++S   +G+ G++ +S +  L S+N+++  I D  ++ ++ L  L SLN+    I D G+
Sbjct: 189 DISLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGV 248

Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
             ++ +  LT L++    I D G   +   K L SL I    +   G K I ++  LT L
Sbjct: 249 KLISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSL 308

Query: 426 NLSQNCNLTDKTLELISGLTGLVSLN 451
           +++ N  + D+ ++ IS +  L SLN
Sbjct: 309 SINYN-QIGDEGVKSISDMKQLTSLN 333



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 107/204 (52%)

Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
            ++  +++LT L +    +    +  +S L  L  LN++  ++ D+G +  S++  L  L
Sbjct: 129 KFISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSL 188

Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
           ++  N+I  E +  +  +  L SLN++   IGDEG+  ++ L  L  L +S+  +G  G+
Sbjct: 189 DISLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGV 248

Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
           + +S +  L S+N+S  GI D  ++ ++ L  L SLN+   +I   G  +++ +  LT L
Sbjct: 249 KLISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSL 308

Query: 378 DLFGARITDSGAAYLRNFKNLRSL 401
            +   +I D G   + + K L SL
Sbjct: 309 SINYNQIGDEGVKSISDMKQLTSL 332



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 1/152 (0%)

Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
           + +S +  L S+ +S  GI D  ++ ++ L  L SLN+   +I D G+  ++ L  LT L
Sbjct: 129 KFISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSL 188

Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
           D+    I   G   +   K L SL I    + D GVK I +L  LT LN+S N  + D+ 
Sbjct: 189 DISLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNG-IGDEG 247

Query: 438 LELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           ++LIS +  L SLN+SN+ I   G++ ++  +
Sbjct: 248 VKLISEMKQLTSLNISNNGIGDEGVKSISELK 279



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 28/216 (12%)

Query: 43  GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
           G+ D+ + +I S+   L S+++S + + D G+  + +   L SLD +             
Sbjct: 146 GIGDEGVKLI-SELKQLTSLNMSNNRIGDEGVKLISELKQLTSLDISL------------ 192

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
                         N I A+G+K+ + +  L  L++        G+  +  L +L SLNI
Sbjct: 193 --------------NDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNI 238

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
              N I D  +K +S +  L SL IS + + D G+  +  L++LT LN+    + A    
Sbjct: 239 S-NNGIGDEGVKLISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNNRIGAEGAK 297

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
           S+S +  L  L++N  Q+ D+G +  S +  L  LN
Sbjct: 298 SISEMKQLTSLSINYNQIGDEGVKSISDMKQLTSLN 333



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 4/91 (4%)

Query: 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
           LFG+      A ++   K L SL I   G+ D GVK I +L  LT LN+S N  + D+ +
Sbjct: 121 LFGSI---EKAKFISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNN-RIGDEGV 176

Query: 439 ELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           +LIS L  L SL++S + I + G++ ++  +
Sbjct: 177 KLISELKQLTSLDISLNDIGAEGVKSISEMK 207


>gi|149279200|ref|ZP_01885332.1| hypothetical protein PBAL39_12805 [Pedobacter sp. BAL39]
 gi|149229962|gb|EDM35349.1| hypothetical protein PBAL39_12805 [Pedobacter sp. BAL39]
          Length = 1105

 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 124/463 (26%), Positives = 188/463 (40%), Gaps = 79/463 (17%)

Query: 58   SLLSVDLSGSDVTDSGLIHLKDCS-NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
             ++ +++S SD+   GL     C+ NLQ L  +F + + D  LE  RG  +L  L+  RN
Sbjct: 605  QIVQIEISRSDLEGHGLAFFSSCAINLQILQLSFNM-LEDKYLEVFRGAESLRYLNLDRN 663

Query: 117  NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
                   ++ F GL NL  LDL                           N ITD ++K L
Sbjct: 664  R-FNGSCLRNFVGL-NLEHLDLS-------------------------YNEITDDNLKLL 696

Query: 177  SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
                NLKS+ +  +++   G    +   +L  L L    +T  CL   S    L  L LN
Sbjct: 697  GSCPNLKSINLHLNELEGHGFDIFESTTELEWLTLGSNRLTDDCLRYFSRNLDLTALYLN 756

Query: 237  RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH--------------------LKGLT 276
              Q +  G        SL  L+L  N I  + L+H                    LK  T
Sbjct: 757  ENQFNGSGFVYLKNAKSLDTLSLSDNPIDSQYLIHFRNLDKLNYLELGNIRLGDGLKYFT 816

Query: 277  N---LESLNLDSCGIGDEGL-----------VNLTG--------------LCNLKCLELS 308
            N   LE + L + GI D+ L           ++ +G              L  L+ L+++
Sbjct: 817  NSYLLEDIRLYNTGITDQDLQSLVFGNKLKRIDFSGNALTGEVFDIFRGKLEFLERLDIN 876

Query: 309  DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLAA 367
            D Q+GSS         ++  +NLS T I+ G L   +   ++L  L +    + D  L+ 
Sbjct: 877  DNQIGSSLPDIFKDSHHINEVNLSNTQINPGHLNYFSHCAATLTRLYMSNLNLQDNDLSV 936

Query: 368  LTSLTGLTHLDLFGARITDSGAAYLRNFK-NLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
                  L  L+L G R T S    L++    L  L +    L D  + +++  SSL  LN
Sbjct: 937  FGGFQQLKDLNLSGNRFTGSFLIQLKHLATELEELNLANNQLNDQNLYYLEAFSSLNTLN 996

Query: 427  LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
            LSQN    D  + L +  + L  LN+S + I+   L+ L HAR
Sbjct: 997  LSQNLVEGDGLINLRTSASVLEVLNLSGNSISDDDLQFLEHAR 1039



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 164/387 (42%), Gaps = 28/387 (7%)

Query: 56   GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
            G +L  +DLS +++TD  L  L  C NL+S++ +   ++   G +     + L  L+   
Sbjct: 675  GLNLEHLDLSYNEITDDNLKLLGSCPNLKSINLHLN-ELEGHGFDIFESTTELEWLTL-G 732

Query: 116  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL--------------- 160
            +N +T   ++ F+  ++L  L L        G V LK    L++L               
Sbjct: 733  SNRLTDDCLRYFSRNLDLTALYLNENQFNGSGFVYLKNAKSLDTLSLSDNPIDSQYLIHF 792

Query: 161  -NIKWCNCITDSDMKPLSGL---TN---LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
             N+   N +   +++   GL   TN   L+ +++  + +TD  +  L    KL  ++  G
Sbjct: 793  RNLDKLNYLELGNIRLGDGLKYFTNSYLLEDIRLYNTGITDQDLQSLVFGNKLKRIDFSG 852

Query: 214  CPVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
              +T    D     L  L  L++N  Q+     + F     +  +NL   +I    L + 
Sbjct: 853  NALTGEVFDIFRGKLEFLERLDINDNQIGSSLPDIFKDSHHINEVNLSNTQINPGHLNYF 912

Query: 273  KG-LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL-TNLESIN 330
                  L  L + +  + D  L    G   LK L LS  +   S L  L  L T LE +N
Sbjct: 913  SHCAATLTRLYMSNLNLQDNDLSVFGGFQQLKDLNLSGNRFTGSFLIQLKHLATELEELN 972

Query: 331  LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLFGARITDSGA 389
            L+   ++D +L  L   SSL +LNL    +   GL  L TS + L  L+L G  I+D   
Sbjct: 973  LANNQLNDQNLYYLEAFSSLNTLNLSQNLVEGDGLINLRTSASVLEVLNLSGNSISDDDL 1032

Query: 390  AYLRNFKNLRSLEICGGGLTDAGVKHI 416
             +L + + L+ + +       + VK +
Sbjct: 1033 QFLEHARFLKEVRLADNKFNGSCVKFL 1059


>gi|46447197|ref|YP_008562.1| hypothetical protein pc1563 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400838|emb|CAF24287.1| hypothetical protein pc1563 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 380

 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 5/209 (2%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           +TD+ L+ LK+C NL+ L    C  ++D GL HL  L  L  L+      +T  G+    
Sbjct: 172 LTDTHLLALKNCKNLKELHLQDCYMLTDAGLAHLASLVALQHLNLAGCRKLTDAGLAHLT 231

Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
            L+ L  L L  C  +   GL +L  L+ L+ L++  C  +T   +  L  L  L+ L +
Sbjct: 232 PLVVLQYLSLAGCDNLTDAGLAHLTPLVALQHLDLNGCPNLTGVGLAHLKPLVALQHLNL 291

Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
           S C K+TD+G+A+LK L  L  LNL GC  +T A L  L  L +L +L+L  C  L+D G
Sbjct: 292 SWCDKLTDAGLAHLKPLVALHYLNLAGCDKLTDAGLVHLMPLVTLQHLDLTACSNLTDVG 351

Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHL 272
                 + +L+ LNLG+   +TD  L H+
Sbjct: 352 LAHLKPLVALQHLNLGWCPNLTDAGLAHI 380



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 82/232 (35%), Positives = 125/232 (53%), Gaps = 13/232 (5%)

Query: 247 KFSKI---GSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSCGI-GDEGLVNLTGL 299
           KF KI    S ++  L F+E   +TD  L+ LK   NL+ L+L  C +  D GL +L  L
Sbjct: 149 KFEKILNHFSNEIEGLNFSEKYSLTDTHLLALKNCKNLKELHLQDCYMLTDAGLAHLASL 208

Query: 300 CNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA 357
             L+ L L+   ++  +GL HL+ L  L+ ++L+    ++D  L  L  L +L+ L+L+ 
Sbjct: 209 VALQHLNLAGCRKLTDAGLAHLTPLVVLQYLSLAGCDNLTDAGLAHLTPLVALQHLDLNG 268

Query: 358 -RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVK 414
              +T  GLA L  L  L HL+L +  ++TD+G A+L+    L  L + G   LTDAG+ 
Sbjct: 269 CPNLTGVGLAHLKPLVALQHLNLSWCDKLTDAGLAHLKPLVALHYLNLAGCDKLTDAGLV 328

Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHL 465
           H+  L +L  L+L+   NLTD  L  +  L  L  LN+     +T AGL H+
Sbjct: 329 HLMPLVTLQHLDLTACSNLTDVGLAHLKPLVALQHLNLGWCPNLTDAGLAHI 380



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/244 (34%), Positives = 122/244 (50%), Gaps = 30/244 (12%)

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
           ++E LN      +TD+ +  L    NLK L +  C  +TD+G+A+L  L  L  LNL GC
Sbjct: 160 EIEGLNFSEKYSLTDTHLLALKNCKNLKELHLQDCYMLTDAGLAHLASLVALQHLNLAGC 219

Query: 215 -PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 271
             +T A L  L+ L  L YL+L  C  L+D G    + + +L+ L+L G   +T   L H
Sbjct: 220 RKLTDAGLAHLTPLVVLQYLSLAGCDNLTDAGLAHLTPLVALQHLDLNGCPNLTGVGLAH 279

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
           LK L  L+ LNL  C                   +L+D     +GL HL  L  L  +NL
Sbjct: 280 LKPLVALQHLNLSWCD------------------KLTD-----AGLAHLKPLVALHYLNL 316

Query: 332 S-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSG 388
           +    ++D  L  L  L +L+ L+L A   +TD GLA L  L  L HL+L +   +TD+G
Sbjct: 317 AGCDKLTDAGLVHLMPLVTLQHLDLTACSNLTDVGLAHLKPLVALQHLNLGWCPNLTDAG 376

Query: 389 AAYL 392
            A++
Sbjct: 377 LAHI 380



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 28/157 (17%)

Query: 62  VDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           + L+G D +TD+GL HL     LQ LD N C  ++  GL HL+                 
Sbjct: 239 LSLAGCDNLTDAGLAHLTPLVALQHLDLNGCPNLTGVGLAHLK----------------- 281

Query: 121 AQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
                    L+ L  L+L  C ++   GL +LK L+ L  LN+  C+ +TD+ +  L  L
Sbjct: 282 --------PLVALQHLNLSWCDKLTDAGLAHLKPLVALHYLNLAGCDKLTDAGLVHLMPL 333

Query: 180 TNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
             L+ L + +CS +TD G+A+LK L  L  LNL  CP
Sbjct: 334 VTLQHLDLTACSNLTDVGLAHLKPLVALQHLNLGWCP 370



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 67/116 (57%), Gaps = 2/116 (1%)

Query: 58  SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           +L  +DL+G  ++T  GL HLK    LQ L+ ++C +++D GL HL+ L  L  L+    
Sbjct: 260 ALQHLDLNGCPNLTGVGLAHLKPLVALQHLNLSWCDKLTDAGLAHLKPLVALHYLNLAGC 319

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDS 171
           + +T  G+     L+ L  LDL  C+ +   GL +LK L+ L+ LN+ WC  +TD+
Sbjct: 320 DKLTDAGLVHLMPLVTLQHLDLTACSNLTDVGLAHLKPLVALQHLNLGWCPNLTDA 375


>gi|290981112|ref|XP_002673275.1| predicted protein [Naegleria gruberi]
 gi|284086857|gb|EFC40531.1| predicted protein [Naegleria gruberi]
          Length = 461

 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 116/431 (26%), Positives = 197/431 (45%), Gaps = 37/431 (8%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  +D++ SD+ +  +  L    NL+ L+      I D GLE L  L  LT L+ R NN 
Sbjct: 4   LKRLDIASSDIGNEQVKILSQFKNLELLNLGDN-HIKDEGLELLSDLKGLTLLNIR-NNR 61

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLS 177
           I  + +++   + NL  L++++      G+  + + L  L  LN+  C     +  KP+S
Sbjct: 62  I--ESVESICKMKNLTHLNIKKNRIGDLGIEEIAENLNHLIYLNVSGCGI---TSCKPIS 116

Query: 178 -GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
             L  LKSL I+ + +   G   +  +++LT L++    + A     +S L  L  L +N
Sbjct: 117 EKLQYLKSLNINRNNLGSKGAQNVAEMKQLTCLSIGNNHIHAKGALYISRLEKLTALCIN 176

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             ++ D G E   K+  L  L++ +N+I +  +V    +TNL  LNL    I   GLV++
Sbjct: 177 GNRIGDVGAEYIIKMKQLTFLDMQYNQI-ENVMVESSEITNLTYLNLGYNKITTNGLVSI 235

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
           T L  LK L L         L  L  + +L+ +++S    +    + +  ++ L SL + 
Sbjct: 236 TKLDQLKSLYLHYNYYLDPNL--LERMKHLKKLDIS-KNFTQNEFKSICEMTHLTSLIVP 292

Query: 357 ARQITDTGLAALTSLTGLTHLDL-------FGAR-----------------ITDSGAAYL 392
              I  TG+ ++T L  LT LD+        GA                  I   GA ++
Sbjct: 293 RNSINKTGIQSITELKHLTELDIENNEIGTTGAEKISEMKHLLILKIDYNNICSEGARFI 352

Query: 393 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
               NL +L I    +   G K+I  +S LT L +  +  + D+ ++ IS LT L  L++
Sbjct: 353 SQLPNLTALSIGANNIRTVGAKYIGQMSQLTELRIYSDYEIGDEGVKAISRLTRLTKLHI 412

Query: 453 SNSRITSAGLR 463
           +   +T  G +
Sbjct: 413 NGIGMTDEGAK 423



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 138/309 (44%), Gaps = 31/309 (10%)

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           + +LK L I+ S + +  +  L   + L LLNL    +    L+ LS L  L  LN+   
Sbjct: 1   MKHLKRLDIASSDIGNEQVKILSQFKNLELLNLGDNHIKDEGLELLSDLKGLTLLNIRNN 60

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITD-------ECLVHL-----------------KG 274
           ++  +  E   K+ +L  LN+  N I D       E L HL                 + 
Sbjct: 61  RI--ESVESICKMKNLTHLNIKKNRIGDLGIEEIAENLNHLIYLNVSGCGITSCKPISEK 118

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           L  L+SLN++   +G +G  N+  +  L CL + +  + + G  ++S L  L ++ ++  
Sbjct: 119 LQYLKSLNINRNNLGSKGAQNVAEMKQLTCLSIGNNHIHAKGALYISRLEKLTALCINGN 178

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            I D     +  +  L  L++   QI +  + + + +T LT+L+L   +IT +G   +  
Sbjct: 179 RIGDVGAEYIIKMKQLTFLDMQYNQIENVMVES-SEITNLTYLNLGYNKITTNGLVSITK 237

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
              L+SL +      D  +  ++ +  L  L++S+  N T    + I  +T L SL V  
Sbjct: 238 LDQLKSLYLHYNYYLDPNL--LERMKHLKKLDISK--NFTQNEFKSICEMTHLTSLIVPR 293

Query: 455 SRITSAGLR 463
           + I   G++
Sbjct: 294 NSINKTGIQ 302



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 94/192 (48%), Gaps = 5/192 (2%)

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           + +L+ L++ S  IG+E +  L+   NL+ L L D  +   GL  LS L  L  +N+   
Sbjct: 1   MKHLKRLDIASSDIGNEQVKILSQFKNLELLNLGDNHIKDEGLELLSDLKGLTLLNIRNN 60

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLR 393
            I   S+  +  + +L  LN+   +I D G+  +  +L  L +L++ G  IT S      
Sbjct: 61  RIE--SVESICKMKNLTHLNIKKNRIGDLGIEEIAENLNHLIYLNVSGCGIT-SCKPISE 117

Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
             + L+SL I    L   G +++ ++  LT L++  N ++  K    IS L  L +L ++
Sbjct: 118 KLQYLKSLNINRNNLGSKGAQNVAEMKQLTCLSIGNN-HIHAKGALYISRLEKLTALCIN 176

Query: 454 NSRITSAGLRHL 465
            +RI   G  ++
Sbjct: 177 GNRIGDVGAEYI 188


>gi|209154948|gb|ACI33706.1| F-box/LRR-repeat protein 14 [Salmo salar]
          Length = 400

 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 107/327 (32%), Positives = 170/327 (51%), Gaps = 32/327 (9%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
           RG+  +  LS RR+ +   QGM       N+  L+L  C  +     G   ++ +  L  
Sbjct: 68  RGIRRVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 121

Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPV 216
           LN+  C  ITDS +  ++  L NL+ L++  CS +T++G+  +  GL +L  LNL  C  
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRH 181

Query: 217 TA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
            +       A +   +A G  +L YL L  CQ L+D   +  SK +  L+VLNL F   I
Sbjct: 182 VSDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLAKLRVLNLSFCGGI 241

Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS 321
           +D  ++HL  +T+L SLNL SC  I D G+++L  G   L  L++S   ++G   L +++
Sbjct: 242 SDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDMSFCDKIGDQSLAYIA 301

Query: 322 -GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHL 377
            GL  L+S++L    ISD  + R +  +  L++LN+    +ITD GL  +   LT LT +
Sbjct: 302 QGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLTGI 361

Query: 378 DLFG-ARITDSGAAYLRNFKNLRSLEI 403
           DL+G  +IT  G   +     L+ L +
Sbjct: 362 DLYGCTKITKRGLERITQLPCLKVLNL 388



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 103/317 (32%), Positives = 168/317 (52%), Gaps = 48/317 (15%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           + G+ N++SL +S C  +TD+G+  A+++ +  L +LNL  C                  
Sbjct: 86  IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCK----------------- 128

Query: 233 LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GI 288
                 Q++D    + ++ + +L+VL LG  + IT+  L+ +  GL  L+SLNL SC  +
Sbjct: 129 ------QITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHV 182

Query: 289 GDEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-IS 337
            D G+ +L G+         NL+ L L D Q +    L+H+S GL  L  +NLSF G IS
Sbjct: 183 SDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLAKLRVLNLSFCGGIS 242

Query: 338 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-GLTHLDL-FGARITDSGAAYL-R 393
           D  +  L+ ++SL SLNL +   I+DTG+  L   T  L+ LD+ F  +I D   AY+ +
Sbjct: 243 DAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDMSFCDKIGDQSLAYIAQ 302

Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  LT L  ++
Sbjct: 303 GLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLTGID 362

Query: 452 VSN-SRITSAGLRHLNH 467
           +   ++IT  GL  +  
Sbjct: 363 LYGCTKITKRGLERITQ 379



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 168/308 (54%), Gaps = 26/308 (8%)

Query: 81  SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLD 137
            N++SL+ + C  ++D GL H  ++ + +L  L+      IT   +   A  L NL  L+
Sbjct: 90  PNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLGRIAQYLKNLEVLE 149

Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLKSLQI 187
           L  C+ I   G L+   GL +L+SLN++ C  ++D  +  L+G+T        NL+ L +
Sbjct: 150 LGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLNLEYLTL 209

Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDD 243
             C K+TD  + ++ KGL KL +LNL  C  ++ A +  LS + SL+ LNL  C  +SD 
Sbjct: 210 QDCQKLTDLSLKHISKGLAKLRVLNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDT 269

Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-G 298
           G    + +G+L++  L++ F ++I D+ L ++ +GL  L+SL+L SC I D+G+  +   
Sbjct: 270 GIMHLA-MGTLRLSGLDMSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQ 328

Query: 299 LCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 355
           +  L+ L +    ++   GL  ++  LT L  I+L   T I+   L ++  L  LK LNL
Sbjct: 329 MHELRTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNL 388

Query: 356 DARQITDT 363
              Q+T++
Sbjct: 389 GLWQMTES 396



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 142/286 (49%), Gaps = 33/286 (11%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
           + D  +  IA    +L  ++L G S++T++GL+ +      L+SL+   C  +SD G+ H
Sbjct: 130 ITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGH 189

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
           L G++                   A  G +NL  L L+ C ++    L ++ KGL KL  
Sbjct: 190 LAGMTR-----------------SAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLAKLRV 232

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
           LN+ +C  I+D+ M  LS +T+L SL + SC  ++D+GI +L  G  +L+ L++  C   
Sbjct: 233 LNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDMSFCDKI 292

Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVH 271
                SL+ +    Y    L+L  C +SDDG  +  + +  L+ LN+G    ITD+ L  
Sbjct: 293 GD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLEL 350

Query: 272 LK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
           +   LT L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 351 IADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTES 396


>gi|290996590|ref|XP_002680865.1| predicted protein [Naegleria gruberi]
 gi|284094487|gb|EFC48121.1| predicted protein [Naegleria gruberi]
          Length = 304

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 134/269 (49%), Gaps = 26/269 (9%)

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLE 279
           +D    L S+  L+ N  Q+     + FSK+ +L  L+L +NE +TD  +  +  + ++ 
Sbjct: 2   IDYFPTLESVTDLSFNHHQVRITNTKIFSKLKNLTALDLSYNELVTDAHVKEISLIPSMR 61

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            LN+    IG + +V ++ +  L+ L L + ++ +  + +L  LTNL+ +N S    S G
Sbjct: 62  RLNIFCTDIGKQSIVYISEMKLLESLILGELRLEAESVAYLKKLTNLKELNCS--PDSYG 119

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
           +   L+ + SL SL L+ +   +  +  ++ LT L HL L+ + I   GA +L N  +  
Sbjct: 120 TSAHLSEMKSLNSLILNVKYNKEEDIENISKLTSLNHLKLWNSNINSKGAEFLSNISSFT 179

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQN-----------------------CNLTDK 436
           SL + G  + DAG+ +I  L++LT LNLS N                        N+ D+
Sbjct: 180 SLNLSGNVIRDAGLVNIGKLANLTFLNLSYNGLSDSGITNLGNLRKLTDLNLNGNNIEDQ 239

Query: 437 TLELISGLTGLVSLNVSNSRITSAGLRHL 465
             ++IS  + L  L + N++IT  G  +L
Sbjct: 240 GAKIISKFSHLKYLQLRNNQITKNGANYL 268



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 147/332 (44%), Gaps = 51/332 (15%)

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
           +++   L ++T LSF  +  +     K F+ L NL  LDL                    
Sbjct: 2   IDYFPTLESVTDLSFNHH-QVRITNTKIFSKLKNLTALDLS------------------- 41

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
                +   +TD+ +K +S + +++ L I C+ +    I Y+  ++ L  L L    + A
Sbjct: 42  -----YNELVTDAHVKEISLIPSMRRLNIFCTDIGKQSIVYISEMKLLESLILGELRLEA 96

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
             +  L  L +L  LN   C     G                          HL  + +L
Sbjct: 97  ESVAYLKKLTNLKELN---CSPDSYGTS-----------------------AHLSEMKSL 130

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            SL L+     +E + N++ L +L  L+L ++ + S G   LS +++  S+NLS   I D
Sbjct: 131 NSLILNVKYNKEEDIENISKLTSLNHLKLWNSNINSKGAEFLSNISSFTSLNLSGNVIRD 190

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L  +  L++L  LNL    ++D+G+  L +L  LT L+L G  I D GA  +  F +L
Sbjct: 191 AGLVNIGKLANLTFLNLSYNGLSDSGITNLGNLRKLTDLNLNGNNIEDQGAKIISKFSHL 250

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           + L++    +T  G  ++ +L+SL  L+L +N
Sbjct: 251 KYLQLRNNQITKNGANYLSNLNSLYSLDLREN 282



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 132/287 (45%), Gaps = 42/287 (14%)

Query: 52  IASQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
           I S+  +L ++DLS ++ VTD+ +  +    +++ L+  FC  I    + ++  +  L S
Sbjct: 28  IFSKLKNLTALDLSYNELVTDAHVKEISLIPSMRRLNI-FCTDIGKQSIVYISEMKLLES 86

Query: 111 L---SFRRNNAITAQGMKAFAGLINLVKLDLERCTR-IHGGLVNLKGLMKLESL--NIKW 164
           L     R    + A+ +     L NL +L+   C+   +G   +L  +  L SL  N+K+
Sbjct: 87  LILGELR----LEAESVAYLKKLTNLKELN---CSPDSYGTSAHLSEMKSLNSLILNVKY 139

Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
                + D++ +S LT+L  L++  S +   G  +L  +   T LNL G  +  A L ++
Sbjct: 140 N---KEEDIENISKLTSLNHLKLWNSNINSKGAEFLSNISSFTSLNLSGNVIRDAGLVNI 196

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
             L +L +LNL+   LSD G      +  L  LNL  N                      
Sbjct: 197 GKLANLTFLNLSYNGLSDSGITNLGNLRKLTDLNLNGN---------------------- 234

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
              I D+G   ++   +LK L+L + Q+  +G  +LS L +L S++L
Sbjct: 235 --NIEDQGAKIISKFSHLKYLQLRNNQITKNGANYLSNLNSLYSLDL 279


>gi|87307769|ref|ZP_01089912.1| serine/threonine protein kinase [Blastopirellula marina DSM 3645]
 gi|87289383|gb|EAQ81274.1| serine/threonine protein kinase [Blastopirellula marina DSM 3645]
          Length = 1283

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 113/461 (24%), Positives = 191/461 (41%), Gaps = 51/461 (11%)

Query: 9    QIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD 68
            ++ N ++++  +T     AF DC LQ + L   P V D+W+  + +   +   +  S + 
Sbjct: 855  KVTNLMLWATPITREDFLAFADCKLQGVLLSYTP-VKDEWLTHL-THPEAFTDLGFSFTQ 912

Query: 69   VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
            + D GL   ++   + +L      +I+D GL +      L S+  R+  ++T  G+  F 
Sbjct: 913  IGDEGLAAFQNSKKIVNLHLEHT-KITDVGLAYFHDCRELKSIRLRQT-SVTDAGVLPFK 970

Query: 129  GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
                L +L L         +  L+    L +  I W     D D K  S           
Sbjct: 971  HCSKLEELSLATTNVTAAAVEELRA--ALPNCKITW-----DGDAKTES----------P 1013

Query: 189  CSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCE 246
              K +D+    Y+  +  +  LN  G  + +A  +   A   L ++N N C+  +DDG  
Sbjct: 1014 EEKNSDNLAAKYVLSIGGIVRLNGGGTDIHSAT-ELPPAPFRLTHVNFNLCKKATDDGLA 1072

Query: 247  KFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
             F+    +  L + F   +T   L + K   +L+ LN                 CN    
Sbjct: 1073 VFANCKDIVSLTMRFTPNVTGRGLAYFKNCKDLKELN-----------------CNY--- 1112

Query: 306  ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
                +   S+GL  L+   NLE I+L     +   LR +A L  L  +NL A  + D  L
Sbjct: 1113 ----SPYVSAGLPLLANCKNLEKISLMGVKFTREELRPIAELP-LTFVNLGATPVQDEWL 1167

Query: 366  AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
            +  T+   LT+L+    +I D G A  +N   L+ L +    +TD G+ +  D   L +L
Sbjct: 1168 SDFTNAESLTYLNFASTKIGDKGLAAFQNCNALQQLSLQDTNITDEGLAYFYDCRDLEIL 1227

Query: 426  NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
             L QN  + D  L        L  + +S +R+T+AG+  L 
Sbjct: 1228 QL-QNTKVRDFGLLRFKSCQKLKQVEISKTRVTAAGVDELK 1267



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 94/214 (43%), Gaps = 28/214 (13%)

Query: 253 SLKVLNLGFN---EITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELS 308
            +K+ ++ FN   E T+E         ++E+L L +   I  +GL +     NLK L L 
Sbjct: 779 PVKLKSVFFNQAIECTNEEFAVFADCQDIEALTLWAVPTISADGLKHFRRCRNLKVLALP 838

Query: 309 DTQVGSSGLRHLS---GLTNL--------------------ESINLSFTGISDGSLRKLA 345
                 SGL HLS    +TNL                    + + LS+T + D  L  L 
Sbjct: 839 HCDNIGSGLSHLSECDKVTNLMLWATPITREDFLAFADCKLQGVLLSYTPVKDEWLTHLT 898

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
              +   L     QI D GLAA  +   + +L L   +ITD G AY  + + L+S+ +  
Sbjct: 899 HPEAFTDLGFSFTQIGDEGLAAFQNSKKIVNLHLEHTKITDVGLAYFHDCRELKSIRLRQ 958

Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
             +TDAGV   K  S L  L+L+   N+T   +E
Sbjct: 959 TSVTDAGVLPFKHCSKLEELSLA-TTNVTAAAVE 991



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 80/214 (37%), Gaps = 25/214 (11%)

Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
           +E+L +     I+   +K      NLK L +       SG+++L    K+T L L   P+
Sbjct: 807 IEALTLWAVPTISADGLKHFRRCRNLKVLALPHCDNIGSGLSHLSECDKVTNLMLWATPI 866

Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
           T              +L    C+L           G L    L +  + DE L HL    
Sbjct: 867 TRED-----------FLAFADCKLQ----------GVL----LSYTPVKDEWLTHLTHPE 901

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
               L      IGDEGL        +  L L  T++   GL +      L+SI L  T +
Sbjct: 902 AFTDLGFSFTQIGDEGLAAFQNSKKIVNLHLEHTKITDVGLAYFHDCRELKSIRLRQTSV 961

Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
           +D  +      S L+ L+L    +T   +  L +
Sbjct: 962 TDAGVLPFKHCSKLEELSLATTNVTAAAVEELRA 995


>gi|290991272|ref|XP_002678259.1| predicted protein [Naegleria gruberi]
 gi|284091871|gb|EFC45515.1| predicted protein [Naegleria gruberi]
          Length = 434

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 147/317 (46%), Gaps = 23/317 (7%)

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           S++   S L  L  L ++ +++ D  +  +  L+ LTLL L G  ++   +  +S L  L
Sbjct: 36  SEIDKFSRLDQLTELNVNWNRLKDEDVESIGNLKNLTLLELSGNEISKNSMKFISQLSEL 95

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
             L++    + ++G      +  L  LN+    IT E +  +  L+NL  L++    IG 
Sbjct: 96  TKLSVGLNSIENEGINSIINLSKLTCLNIINANITSEGVKLIGKLSNLTILDISGNLIGA 155

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
           EG   +  L NLK L  SD ++G  G + +  +  L S+ L    I +   + ++ LS L
Sbjct: 156 EGGQYIGELKNLKTLVASDNELGVLGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLSQL 215

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFG----------------------ARITDSG 388
             L+L   +I D G   L  L  LT+LDL                         +I D G
Sbjct: 216 TDLDLGKNEIGDEGFKLLAKLEKLTNLDLVSNNISDLSSTGQLGLLNCLDVRKNKIEDKG 275

Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
              +     L+SL +C   +T  G K + ++  LT L++S+  ++ D+  + I+ LT L 
Sbjct: 276 IRNICQLSGLQSLRLCANPITSEGAKILSEMVQLTNLSISE-THIDDEGAKFIAQLTTLK 334

Query: 449 SLNVSNSRITSAGLRHL 465
            L++S  RIT+ G++ +
Sbjct: 335 YLDISTKRITANGVKFI 351



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 108/372 (29%), Positives = 175/372 (47%), Gaps = 29/372 (7%)

Query: 83  LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
           L  L+ N+  ++ D  +E +  L NLT L     N I+   MK  + L  L KL +   +
Sbjct: 47  LTELNVNWN-RLKDEDVESIGNLKNLTLLELS-GNEISKNSMKFISQLSELTKLSVGLNS 104

Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
             + G+ ++  L KL  LNI   N IT   +K +  L+NL  L IS + +   G  Y+  
Sbjct: 105 IENEGINSIINLSKLTCLNIINAN-ITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGE 163

Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
           L+ L  L      +      S+  +  L  L L    + ++G +  S++  L  L+LG N
Sbjct: 164 LKNLKTLVASDNELGVLGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLSQLTDLDLGKN 223

Query: 263 EITDE---CLVHLKGLTNLESL-----NLDSCG--------------IGDEGLVNLTGLC 300
           EI DE    L  L+ LTNL+ +     +L S G              I D+G+ N+  L 
Sbjct: 224 EIGDEGFKLLAKLEKLTNLDLVSNNISDLSSTGQLGLLNCLDVRKNKIEDKGIRNICQLS 283

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            L+ L L    + S G + LS +  L ++++S T I D   + +A L++LK L++  ++I
Sbjct: 284 GLQSLRLCANPITSEGAKILSEMVQLTNLSISETHIDDEGAKFIAQLTTLKYLDISTKRI 343

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE--ICGGGLTDAGVKHIKD 418
           T  G+  +  L+ L  LD+    I D G  Y+   + L +L    C  GL   G K + +
Sbjct: 344 TANGVKFICQLSKLISLDINWNNIGDEGVLYISRMQQLETLNAVYCNIGL--EGAKLLSE 401

Query: 419 LSSLTLLNLSQN 430
           +  LT+L++  N
Sbjct: 402 MEQLTVLDVKIN 413



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 167/365 (45%), Gaps = 27/365 (7%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           ++LSG++++ + +  +   S L  L       I + G+  +  LS LT L+    N IT+
Sbjct: 74  LELSGNEISKNSMKFISQLSELTKLSVGLN-SIENEGINSIINLSKLTCLNIINAN-ITS 131

Query: 122 QGMKAFAGLINLVKLDLE------RCTRIHGGLVNLKGLM----KLESLNIKWC------ 165
           +G+K    L NL  LD+          +  G L NLK L+    +L  L  K        
Sbjct: 132 EGVKLIGKLSNLTILDISGNLIGAEGGQYIGELKNLKTLVASDNELGVLGAKSIGEMNQL 191

Query: 166 -------NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
                  N I +   K +S L+ L  L +  +++ D G   L  L+KLT  NL+      
Sbjct: 192 TSLCLIGNSIGNEGAKYISQLSQLTDLDLGKNEIGDEGFKLLAKLEKLT--NLDLVSNNI 249

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
           + L S   LG L  L++ + ++ D G     ++  L+ L L  N IT E    L  +  L
Sbjct: 250 SDLSSTGQLGLLNCLDVRKNKIEDKGIRNICQLSGLQSLRLCANPITSEGAKILSEMVQL 309

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            +L++    I DEG   +  L  LK L++S  ++ ++G++ +  L+ L S+++++  I D
Sbjct: 310 TNLSISETHIDDEGAKFIAQLTTLKYLDISTKRITANGVKFICQLSKLISLDINWNNIGD 369

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             +  ++ +  L++LN     I   G   L+ +  LT LD+   RI   G   L N    
Sbjct: 370 EGVLYISRMQQLETLNAVYCNIGLEGAKLLSEMEQLTVLDVKINRIPGEGIQLLENIARF 429

Query: 399 RSLEI 403
           +SL +
Sbjct: 430 KSLVV 434



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 140/310 (45%), Gaps = 26/310 (8%)

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           + NL  L I  +K+++     L G++ L +L   G  +     D  S L  L  LN+N  
Sbjct: 1   MKNLTYLNIDWNKISEKSKIILSGMKHLKILAASGSEI-----DKFSRLDQLTELNVNWN 55

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
           +L D+  E    + +L +L L  NEI+   +  +  L+ L  L++    I +EG+ ++  
Sbjct: 56  RLKDEDVESIGNLKNLTLLELSGNEISKNSMKFISQLSELTKLSVGLNSIENEGINSIIN 115

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
           L  L CL + +  + S G++ +  L+NL  +++S   I     + +  L +LK+L     
Sbjct: 116 LSKLTCLNIINANITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGELKNLKTLVASDN 175

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
           ++   G  ++  +  LT L L G  I + GA Y+     L  L++    + D G K +  
Sbjct: 176 ELGVLGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLSQLTDLDLGKNEIGDEGFKLLAK 235

Query: 419 LSSLTLLNLSQN---------------C------NLTDKTLELISGLTGLVSLNVSNSRI 457
           L  LT L+L  N               C       + DK +  I  L+GL SL +  + I
Sbjct: 236 LEKLTNLDLVSNNISDLSSTGQLGLLNCLDVRKNKIEDKGIRNICQLSGLQSLRLCANPI 295

Query: 458 TSAGLRHLNH 467
           TS G + L+ 
Sbjct: 296 TSEGAKILSE 305



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 5/228 (2%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           SQ S L  +DL  +++ D G   L     L +LD      ISD  L     L  L  L  
Sbjct: 210 SQLSQLTDLDLGKNEIGDEGFKLLAKLEKLTNLDL-VSNNISD--LSSTGQLGLLNCLDV 266

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
           R+ N I  +G++    L  L  L L        G   L  +++L +L+I   + I D   
Sbjct: 267 RK-NKIEDKGIRNICQLSGLQSLRLCANPITSEGAKILSEMVQLTNLSISETH-IDDEGA 324

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           K ++ LT LK L IS  ++T +G+ ++  L KL  L++    +    +  +S +  L  L
Sbjct: 325 KFIAQLTTLKYLDISTKRITANGVKFICQLSKLISLDINWNNIGDEGVLYISRMQQLETL 384

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
           N   C +  +G +  S++  L VL++  N I  E +  L+ +   +SL
Sbjct: 385 NAVYCNIGLEGAKLLSEMEQLTVLDVKINRIPGEGIQLLENIARFKSL 432


>gi|218960535|ref|YP_001740310.1| putative Phosphoprotein phosphatase [Candidatus Cloacamonas
            acidaminovorans]
 gi|167729192|emb|CAO80103.1| putative Phosphoprotein phosphatase [Candidatus Cloacamonas
            acidaminovorans str. Evry]
          Length = 3445

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 105/311 (33%), Positives = 152/311 (48%), Gaps = 57/311 (18%)

Query: 154  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
            L  L+SL++   N I  SD+ PL+GLTNL+ L +  ++++D                   
Sbjct: 2943 LTNLQSLDLD-SNQI--SDLSPLAGLTNLQELYLYYNQISD------------------- 2980

Query: 214  CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
                   L  L+ L +L YL+L   Q+SD      + + +L+ L L +N+I D  L  L 
Sbjct: 2981 -------LSPLAELTNLQYLDLGGNQISD--LSPLAGLNNLQELYLYWNQIGD--LSPLA 3029

Query: 274  GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
            GLTNL+ L+L S  I D  L  L  L NL  L+LS  Q+  S L  L+GLTNL+ + L +
Sbjct: 3030 GLTNLQELDLYSNQISD--LSPLAELTNLWYLDLSYNQI--SDLSPLAGLTNLQDLYLGW 3085

Query: 334  TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
              I+   L  LAGL++L+ LNL + QI+D  L+ L  LT L +L L+  +I+D   + L 
Sbjct: 3086 NQIN--YLSPLAGLTNLQVLNLYSNQISD--LSPLAELTNLQYLHLYYNQISD--LSPLT 3139

Query: 394  NFKNLRSLEICGG---------GLTDAGVKH-----IKDLSSLTLLNLSQNCNLTDKTLE 439
               NL  L +            GLT+    H     I D+S L  L   Q   L    + 
Sbjct: 3140 GLTNLHYLYLAYNQISDLSPLIGLTNLQYLHLYYNQISDISPLAELTNLQYLWLDSNQIS 3199

Query: 440  LISGLTGLVSL 450
             +S L GL +L
Sbjct: 3200 DLSPLAGLTNL 3210



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 101/265 (38%), Positives = 140/265 (52%), Gaps = 23/265 (8%)

Query: 77   LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
            L   +NLQ LD     QISD  L  L GL+NL  L    N       +   AGL NL +L
Sbjct: 2353 LAGLTNLQYLDLG-GNQISD--LSPLAGLTNLQDLYLGWNQI---NYLSPLAGLTNLQEL 2406

Query: 137  DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
            DL    +I   +  L GL  L+ L + + N I  SD+ PLSGLTNL+ L +  +++  S 
Sbjct: 2407 DLNN-NQI-SNINPLAGLTNLQKLYLYY-NQI--SDLSPLSGLTNLQYLLLEYNQI--SN 2459

Query: 197  IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
            I+ L GL  L +L+L    ++   L  L+ L +L+YL+L+  Q+SD        + +L+ 
Sbjct: 2460 ISPLAGLTNLQVLDLYSNQISD--LSPLAELTNLWYLDLSYNQISD--LSPLVGLVNLQG 2515

Query: 257  LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
            L L  N+I D  L  L GLTNL+ L+L    I D  L  LTGL NL  L L+  Q+  S 
Sbjct: 2516 LWLDNNQIND--LSPLIGLTNLQYLHLYYNQISD--LSPLTGLTNLHYLYLAYNQI--SD 2569

Query: 317  LRHLSGLTNLESINLSFTGISDGSL 341
            L  + GLTNL+ + L +  IS  S+
Sbjct: 2570 LSSVEGLTNLQELYLDYNPISYESM 2594



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 83/230 (36%), Positives = 130/230 (56%), Gaps = 19/230 (8%)

Query: 148  LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
            +++++G   L +L + +      SD+ PL+GL NL+ L +  ++++D  I+ L GL  L 
Sbjct: 1089 IISIEGAQYLTNLQVMYLYSNQISDLSPLAGLANLQELLLYANQISD--ISPLAGLNNLQ 1146

Query: 208  LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
             L L+   ++   L  L+ L +L  L L   Q+SD      + + +L+VL+L  N+I+  
Sbjct: 1147 YLLLQYNQISD--LSPLAGLTNLQNLILAYNQISD--ISPLAGLTNLQVLDLYSNQIS-- 1200

Query: 268  CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
             L  L GLTNL+ L L S  I D  L  L G+ NL+ + L + Q+  S L  L+GLTNL+
Sbjct: 1201 YLSPLAGLTNLQELYLHSNQISD--LSPLAGMTNLRVINLKNNQI--SDLSPLAGLTNLQ 1256

Query: 328  SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
             + L +  I+D  +  LAGL++L SLNL   QI+D     L+ L GLT+L
Sbjct: 1257 YLLLGWNKIND--ISPLAGLTNLWSLNLSYNQISD-----LSPLAGLTNL 1299



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 115/350 (32%), Positives = 165/350 (47%), Gaps = 75/350 (21%)

Query: 81   SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
            +NLQSLD +   QISD  L  L GL+NL  L    N       +   AGL NL  LDL  
Sbjct: 2313 TNLQSLDLD-SNQISD--LSPLAGLTNLLELYLLDN---MINYLSPLAGLTNLQYLDL-- 2364

Query: 141  CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
                 GG                  N I  SD+ PL+GLTNL+ L +  +++        
Sbjct: 2365 -----GG------------------NQI--SDLSPLAGLTNLQDLYLGWNQIN------- 2392

Query: 201  KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
                                L  L+ L +L  L+LN  Q+S+      + + +L+ L L 
Sbjct: 2393 -------------------YLSPLAGLTNLQELDLNNNQISN--INPLAGLTNLQKLYLY 2431

Query: 261  FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
            +N+I+D  L  L GLTNL+ L L+   I +  +  L GL NL+ L+L   Q+  S L  L
Sbjct: 2432 YNQISD--LSPLSGLTNLQYLLLEYNQISN--ISPLAGLTNLQVLDLYSNQI--SDLSPL 2485

Query: 321  SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
            + LTNL  ++LS+  ISD  L  L GL +L+ L LD  QI D  L+ L  LT L +L L+
Sbjct: 2486 AELTNLWYLDLSYNQISD--LSPLVGLVNLQGLWLDNNQIND--LSPLIGLTNLQYLHLY 2541

Query: 381  GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
              +I+D   + L    NL  L +    ++D  +  ++ L++L  L L  N
Sbjct: 2542 YNQISD--LSPLTGLTNLHYLYLAYNQISD--LSSVEGLTNLQELYLDYN 2587



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 97/273 (35%), Positives = 147/273 (53%), Gaps = 26/273 (9%)

Query: 179  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
            LTNL+SL +  ++++D  ++ L GL  L  L L    +    L  L+ L +L YL+L   
Sbjct: 2312 LTNLQSLDLDSNQISD--LSPLAGLTNLLELYLLDNMINY--LSPLAGLTNLQYLDLGGN 2367

Query: 239  QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
            Q+SD      + + +L+ L LG+N+I    L  L GLTNL+ L+L++  I +  +  L G
Sbjct: 2368 QISD--LSPLAGLTNLQDLYLGWNQIN--YLSPLAGLTNLQELDLNNNQISN--INPLAG 2421

Query: 299  LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
            L NL+ L L   Q+  S L  LSGLTNL+ + L +  IS+  +  LAGL++L+ L+L + 
Sbjct: 2422 LTNLQKLYLYYNQI--SDLSPLSGLTNLQYLLLEYNQISN--ISPLAGLTNLQVLDLYSN 2477

Query: 359  QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
            QI+D  L+ L  LT L +LDL   +I+D   + L    NL+ L +            I D
Sbjct: 2478 QISD--LSPLAELTNLWYLDLSYNQISD--LSPLVGLVNLQGLWLDN--------NQIND 2525

Query: 419  LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
            LS L  L   Q  +L    +  +S LTGL +L+
Sbjct: 2526 LSPLIGLTNLQYLHLYYNQISDLSPLTGLTNLH 2558



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 79/211 (37%), Positives = 111/211 (52%), Gaps = 22/211 (10%)

Query: 253  SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
            +L+ L+L  N+I+D  L  L GLTNL+ L L    I D  L  L  L NL+ L+L   Q+
Sbjct: 2945 NLQSLDLDSNQISD--LSPLAGLTNLQELYLYYNQISD--LSPLAELTNLQYLDLGGNQI 3000

Query: 313  GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
              S L  L+GL NL+ + L +  I D  L  LAGL++L+ L+L + QI+D  L+ L  LT
Sbjct: 3001 --SDLSPLAGLNNLQELYLYWNQIGD--LSPLAGLTNLQELDLYSNQISD--LSPLAELT 3054

Query: 373  GLTHLDLFGARITD-SGAAYLRNFKNL----RSLEICG--GGLTDAGV-----KHIKDLS 420
             L +LDL   +I+D S  A L N ++L      +       GLT+  V       I DLS
Sbjct: 3055 NLWYLDLSYNQISDLSPLAGLTNLQDLYLGWNQINYLSPLAGLTNLQVLNLYSNQISDLS 3114

Query: 421  SLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
             L  L   Q  +L    +  +S LTGL +L+
Sbjct: 3115 PLAELTNLQYLHLYYNQISDLSPLTGLTNLH 3145



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 84/258 (32%), Positives = 130/258 (50%), Gaps = 39/258 (15%)

Query: 57   SSLLSVDLSGSDVTD----SGLIHLKDC----------------SNLQSLDFNFCIQISD 96
            ++L  +DL G+ ++D    +GL +L+D                 +NLQ LD N   QIS+
Sbjct: 2357 TNLQYLDLGGNQISDLSPLAGLTNLQDLYLGWNQINYLSPLAGLTNLQELDLNNN-QISN 2415

Query: 97   GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156
              +  L GL+NL  L    N       +   +GL NL  L LE   +I   +  L GL  
Sbjct: 2416 --INPLAGLTNLQKLYLYYNQI---SDLSPLSGLTNLQYLLLEY-NQI-SNISPLAGLTN 2468

Query: 157  LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
            L+ L++ + N I  SD+ PL+ LTNL  L +S ++++D  ++ L GL  L  L L+   +
Sbjct: 2469 LQVLDL-YSNQI--SDLSPLAELTNLWYLDLSYNQISD--LSPLVGLVNLQGLWLDNNQI 2523

Query: 217  TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
                L  L  L +L YL+L   Q+SD      + + +L  L L +N+I+D  L  ++GLT
Sbjct: 2524 ND--LSPLIGLTNLQYLHLYYNQISD--LSPLTGLTNLHYLYLAYNQISD--LSSVEGLT 2577

Query: 277  NLESLNLDSCGIGDEGLV 294
            NL+ L LD   I  E ++
Sbjct: 2578 NLQELYLDYNPISYESML 2595



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 120/239 (50%), Gaps = 38/239 (15%)

Query: 148  LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
            +++++G     +L+  + +    S++ PL+GLTNLK L +  ++++D  I  L GL  ++
Sbjct: 1694 IISIEGAQYFTNLDSLYLSYNQISNLNPLAGLTNLKGLNLGSNQISD--INPLAGLTNIS 1751

Query: 208  LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
             L L G  ++     +++ L  L+                     +L+ L L +N+I+D 
Sbjct: 1752 WLFLFGNYIS-----NIAPLEGLY---------------------NLRNLQLHYNQISD- 1784

Query: 268  CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
             +  L  L ++  + L S  I D  +  L GL +L  LEL   Q+  + +  LSGL NL+
Sbjct: 1785 -ITPLAALIDIGGIALGSNQIVD--ITPLAGLTHLIGLELYHNQI--NNIDALSGLINLQ 1839

Query: 328  SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
             + L    I D  +  LAGLS L+ L L+  QI D  ++ L+ L  L +L L+  +I+D
Sbjct: 1840 WLYLDGNQIID--ISPLAGLSILRELYLENNQIND--ISTLSELNNLQYLFLYNNQISD 1894



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 78/217 (35%), Positives = 122/217 (56%), Gaps = 21/217 (9%)

Query: 253  SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
            +L+V+ L  N+I+D  L  L GL NL+ L L +  I D  +  L GL NL+ L L   Q+
Sbjct: 1100 NLQVMYLYSNQISD--LSPLAGLANLQELLLYANQISD--ISPLAGLNNLQYLLLQYNQI 1155

Query: 313  GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
              S L  L+GLTNL+++ L++  ISD  +  LAGL++L+ L+L + QI+   L+ L  LT
Sbjct: 1156 --SDLSPLAGLTNLQNLILAYNQISD--ISPLAGLTNLQVLDLYSNQIS--YLSPLAGLT 1209

Query: 373  GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
             L  L L   +I+D   + L    NLR + +    ++D  +  +  L++L  L L  N  
Sbjct: 1210 NLQELYLHSNQISD--LSPLAGMTNLRVINLKNNQISD--LSPLAGLTNLQYLLLGWN-K 1264

Query: 433  LTDKTLELISGLTGLVSLNVSNSRITS----AGLRHL 465
            + D  +  ++GLT L SLN+S ++I+     AGL +L
Sbjct: 1265 IND--ISPLAGLTNLWSLNLSYNQISDLSPLAGLTNL 1299



 Score = 45.8 bits (107), Expect = 0.046,   Method: Composition-based stats.
 Identities = 69/255 (27%), Positives = 111/255 (43%), Gaps = 57/255 (22%)

Query: 33   LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
            LQDL LG +  +N  ++  +A   ++L  +DL+ + +  S +  L   +NLQ L + +  
Sbjct: 2381 LQDLYLG-WNQIN--YLSPLAGL-TNLQELDLNNNQI--SNINPLAGLTNLQKL-YLYYN 2433

Query: 93   QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL-----------ERC 141
            QISD  L  L GL+NL  L    N       +   AGL NL  LDL              
Sbjct: 2434 QISD--LSPLSGLTNLQYLLLEYNQI---SNISPLAGLTNLQVLDLYSNQISDLSPLAEL 2488

Query: 142  TRI------HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
            T +      +  + +L  L+ L +L   W +    +D+ PL GLTNL+ L +  ++++D 
Sbjct: 2489 TNLWYLDLSYNQISDLSPLVGLVNLQGLWLDNNQINDLSPLIGLTNLQYLHLYYNQISD- 2547

Query: 196  GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
                                     L  L+ L +L YL L   Q+SD        + +L+
Sbjct: 2548 -------------------------LSPLTGLTNLHYLYLAYNQISD--LSSVEGLTNLQ 2580

Query: 256  VLNLGFNEITDECLV 270
             L L +N I+ E ++
Sbjct: 2581 ELYLDYNPISYESML 2595



 Score = 45.1 bits (105), Expect = 0.087,   Method: Composition-based stats.
 Identities = 51/155 (32%), Positives = 75/155 (48%), Gaps = 24/155 (15%)

Query: 308  SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
            SD Q   + L+ L+G       NL   G +  S+     L++L+SL+LD+ QI+D  L+ 
Sbjct: 2911 SDYQPTIADLQGLAG-------NLHADGRNIISIEGAQYLTNLQSLDLDSNQISD--LSP 2961

Query: 368  LTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
            L  LT L  L L+  +I+D S  A L N + L           D G   I DLS L  LN
Sbjct: 2962 LAGLTNLQELYLYYNQISDLSPLAELTNLQYL-----------DLGGNQISDLSPLAGLN 3010

Query: 427  LSQNCNL---TDKTLELISGLTGLVSLNVSNSRIT 458
              Q   L       L  ++GLT L  L++ +++I+
Sbjct: 3011 NLQELYLYWNQIGDLSPLAGLTNLQELDLYSNQIS 3045



 Score = 40.8 bits (94), Expect = 1.6,   Method: Composition-based stats.
 Identities = 48/126 (38%), Positives = 69/126 (54%), Gaps = 13/126 (10%)

Query: 57   SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
            ++L  +DL  + +  S L  L   +NLQ L +    QISD  L  L G++NL  ++ + N
Sbjct: 1187 TNLQVLDLYSNQI--SYLSPLAGLTNLQEL-YLHSNQISD--LSPLAGMTNLRVINLK-N 1240

Query: 117  NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
            N I+   +   AGL NL  L L    +I+  +  L GL  L SLN+ + N I  SD+ PL
Sbjct: 1241 NQIS--DLSPLAGLTNLQYL-LLGWNKIND-ISPLAGLTNLWSLNLSY-NQI--SDLSPL 1293

Query: 177  SGLTNL 182
            +GLTNL
Sbjct: 1294 AGLTNL 1299



 Score = 39.7 bits (91), Expect = 3.3,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 70/163 (42%), Gaps = 37/163 (22%)

Query: 308  SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG--- 364
            SD Q   + L+ L+G       NL   G +  S+     L++L+SL+LD+ QI+D     
Sbjct: 2280 SDYQPTIADLQGLAG-------NLHADGRNIISIEGAQYLTNLQSLDLDSNQISDLSPLA 2332

Query: 365  -----------------LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
                             L+ L  LT L +LDL G +I+D   + L    NL+ L +    
Sbjct: 2333 GLTNLLELYLLDNMINYLSPLAGLTNLQYLDLGGNQISD--LSPLAGLTNLQDLYL---- 2386

Query: 408  LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
                G   I  LS L  L   Q  +L +  +  I+ L GL +L
Sbjct: 2387 ----GWNQINYLSPLAGLTNLQELDLNNNQISNINPLAGLTNL 2425



 Score = 38.9 bits (89), Expect = 5.9,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 84/168 (50%), Gaps = 21/168 (12%)

Query: 72   SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
            S +  L+   NL++L  ++  QISD  +  L  L ++  ++   N  +    +   AGL 
Sbjct: 1761 SNIAPLEGLYNLRNLQLHYN-QISD--ITPLAALIDIGGIALGSNQIVD---ITPLAGLT 1814

Query: 132  NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS--DMKPLSGLTNLKSLQISC 189
            +L+ L+L      H  + N+  L  L  +N++W     +   D+ PL+GL+ L+ L +  
Sbjct: 1815 HLIGLEL-----YHNQINNIDALSGL--INLQWLYLDGNQIIDISPLAGLSILRELYLEN 1867

Query: 190  SKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
            +++ D S ++ L  LQ L L N +      + L  L+ L +L++L L+
Sbjct: 1868 NQINDISTLSELNNLQYLFLYNNQ-----ISDLSPLAGLTNLWWLLLD 1910


>gi|290972196|ref|XP_002668843.1| predicted protein [Naegleria gruberi]
 gi|284082373|gb|EFC36099.1| predicted protein [Naegleria gruberi]
          Length = 348

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 124/225 (55%), Gaps = 13/225 (5%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           +  +  SK+ +LK LN+  N I +E L+ +  L NL +LN+++  IGDEG+ +++ L NL
Sbjct: 8   NDVQDISKLVNLKTLNISINNIGNEGLIIVCNLINLTNLNIENNDIGDEGVQDISKLVNL 67

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI--SDGSLRKLAGLSSLKSLNLDARQI 360
             L +    + S G + +S LTNL S+N++   +  S+ +L          S N    QI
Sbjct: 68  TNLNIKSNALRSKGAQEISKLTNLTSLNVAENNVMLSEKNL----------SRNNITHQI 117

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
            + G+ ++ +L  LT+L++    I D G   +    NL +L+I    + D G+K I +L 
Sbjct: 118 ENDGIKSIFNLINLTNLNIQNNDIGDEGVQDISKLINLTNLDIGNNKIRDEGIKSIFNLI 177

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           +LT LN+ QN ++ D+ ++ IS L  L +L++  ++I   G + +
Sbjct: 178 NLTNLNI-QNNDIGDEGVQDISKLINLTNLDICQTKIGDNGAKEI 221



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 117/222 (52%), Gaps = 8/222 (3%)

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           +D++ +S L NLK+L IS + + + G+  +  L  LT LN+E   +    +  +S L +L
Sbjct: 8   NDVQDISKLVNLKTLNISINNIGNEGLIIVCNLINLTNLNIENNDIGDEGVQDISKLVNL 67

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
             LN+    L   G ++ SK+ +L  LN+  N +    ++  K L    S N  +  I +
Sbjct: 68  TNLNIKSNALRSKGAQEISKLTNLTSLNVAENNV----MLSEKNL----SRNNITHQIEN 119

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
           +G+ ++  L NL  L + +  +G  G++ +S L NL ++++    I D  ++ +  L +L
Sbjct: 120 DGIKSIFNLINLTNLNIQNNDIGDEGVQDISKLINLTNLDIGNNKIRDEGIKSIFNLINL 179

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
            +LN+    I D G+  ++ L  LT+LD+   +I D+GA  +
Sbjct: 180 TNLNIQNNDIGDEGVQDISKLINLTNLDICQTKIGDNGAKEI 221



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 120/232 (51%), Gaps = 18/232 (7%)

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
           ++ +  L NL +L+   NN I  +G+     LINL  L++E       G+ ++  L+ L 
Sbjct: 10  VQDISKLVNLKTLNISINN-IGNEGLIIVCNLINLTNLNIENNDIGDEGVQDISKLVNLT 68

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
           +LNIK  N +     + +S LTNL SL ++ + V             L+  NL    +T 
Sbjct: 69  NLNIK-SNALRSKGAQEISKLTNLTSLNVAENNVM------------LSEKNLSRNNITH 115

Query: 219 AC----LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
                 + S+  L +L  LN+    + D+G +  SK+ +L  L++G N+I DE +  +  
Sbjct: 116 QIENDGIKSIFNLINLTNLNIQNNDIGDEGVQDISKLINLTNLDIGNNKIRDEGIKSIFN 175

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
           L NL +LN+ +  IGDEG+ +++ L NL  L++  T++G +G + +  L NL
Sbjct: 176 LINLTNLNIQNNDIGDEGVQDISKLINLTNLDICQTKIGDNGAKEICKLINL 227



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 26/206 (12%)

Query: 66  GSDVTD-SGLIHLKDCSNLQSLDFNFCIQ-ISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
           G+DV D S L++LK          N  I  I + GL  +  L NLT+L+   NN I  +G
Sbjct: 7   GNDVQDISKLVNLKT--------LNISINNIGNEGLIIVCNLINLTNLNIE-NNDIGDEG 57

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC---------------I 168
           ++  + L+NL  L+++       G   +  L  L SLN+   N                I
Sbjct: 58  VQDISKLVNLTNLNIKSNALRSKGAQEISKLTNLTSLNVAENNVMLSEKNLSRNNITHQI 117

Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
            +  +K +  L NL +L I  + + D G+  +  L  LT L++    +    + S+  L 
Sbjct: 118 ENDGIKSIFNLINLTNLNIQNNDIGDEGVQDISKLINLTNLDIGNNKIRDEGIKSIFNLI 177

Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSL 254
           +L  LN+    + D+G +  SK+ +L
Sbjct: 178 NLTNLNIQNNDIGDEGVQDISKLINL 203



 Score = 38.9 bits (89), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 2/81 (2%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           +L ++++  +D+ D G+  +    NL +LD     +I D G++ +  L NLT+L+  +NN
Sbjct: 130 NLTNLNIQNNDIGDEGVQDISKLINLTNLDIGNN-KIRDEGIKSIFNLINLTNLNI-QNN 187

Query: 118 AITAQGMKAFAGLINLVKLDL 138
            I  +G++  + LINL  LD+
Sbjct: 188 DIGDEGVQDISKLINLTNLDI 208


>gi|357134265|ref|XP_003568738.1| PREDICTED: uncharacterized protein LOC100844673 [Brachypodium
           distachyon]
          Length = 547

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 173/388 (44%), Gaps = 36/388 (9%)

Query: 58  SLLSVDLSGSDVTDS-GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           S+  +DLSG+   D+  L +L     L+ L    C  +++  +  L  L  +        
Sbjct: 73  SVEEIDLSGNIAVDAEWLAYLGSFRYLRVLKLADCKNVNNSAVWALSDLGGIH------- 125

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             +T + +++   L  L  LD+      + G   LK   +L  LN+ W +    + + PL
Sbjct: 126 --MTDKTLRSLQVLTRLEHLDIWGSEITNEGASVLKAFTRLSFLNVSWTHV---TRLPPL 180

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-CLDSLSAL--GSLFYL 233
             L +L     +   + D        L+K T+     C  +     +  S++   SL YL
Sbjct: 181 PNLQHLNMSNCTIHSIRDGDSEVNVPLEKFTV-----CAASFGNIFEVFSSIQGSSLLYL 235

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL-TNLESLNLDSCGIGDEG 292
           +++ C LS+     F K+  ++ L+L F+ ITD  + H+  +  NL  L+L + GI  + 
Sbjct: 236 DMSGCSLSN--LHIFEKMKHIEHLDLSFSRITDAAIQHVANIGMNLRHLSLKNTGITSQA 293

Query: 293 LVNLTG-LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-----------GS 340
              L G + NL  L L+ T++  S L ++S + +L  I+LS T I              S
Sbjct: 294 PCILAGTVPNLSSLSLAYTEIDDSALAYISMMPSLRVIDLSHTSIKGFTCVEVNSEKIPS 353

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
           +  L  L  L+SLNL+   ++D  +  L S   + +L L    ++D     L +  NL  
Sbjct: 354 MPPLEHLMYLESLNLEDTALSDEVIPPLASFRAIKYLYLKSDFLSDPALHALSSASNLTH 413

Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLS 428
           L  CG  L+D+G+      + L +L+LS
Sbjct: 414 LGFCGNILSDSGLLQFVPPAKLRVLDLS 441



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 98/442 (22%), Positives = 179/442 (40%), Gaps = 81/442 (18%)

Query: 2   LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIAS------- 54
           LP  ++  +   L   R L+   LE FR  +++++ L     V+ +W+  + S       
Sbjct: 44  LPGQLADALLQRLAARRLLSPSLLEVFRH-SVEEIDLSGNIAVDAEWLAYLGSFRYLRVL 102

Query: 55  --------QGSSLLSV-DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
                     S++ ++ DL G  +TD  L  L+  + L+ LD  +  +I++ G   L+  
Sbjct: 103 KLADCKNVNNSAVWALSDLGGIHMTDKTLRSLQVLTRLEHLDI-WGSEITNEGASVLKAF 161

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-----GLVNLKGLMKLESL 160
           + L+ L+      ++   +     L NL  L++  CT IH        VN+     LE  
Sbjct: 162 TRLSFLN------VSWTHVTRLPPLPNLQHLNMSNCT-IHSIRDGDSEVNVP----LEKF 210

Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
            +  C     +  +  S +     L +  S  + S +   + ++ +  L+L    +T A 
Sbjct: 211 TV--CAASFGNIFEVFSSIQGSSLLYLDMSGCSLSNLHIFEKMKHIEHLDLSFSRITDAA 268

Query: 221 LDSLSALGSLFYLNLNRCQLSDDG------CEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
           +  ++ +G    +NL    L + G      C     + +L  L+L + EI D  L ++  
Sbjct: 269 IQHVANIG----MNLRHLSLKNTGITSQAPCILAGTVPNLSSLSLAYTEIDDSALAYISM 324

Query: 275 LTNLESLNLDSCGI--------GDEGLVNLTGLCNLKCLE---LSDTQVGSSGLRHLSGL 323
           + +L  ++L    I          E + ++  L +L  LE   L D              
Sbjct: 325 MPSLRVIDLSHTSIKGFTCVEVNSEKIPSMPPLEHLMYLESLNLED-------------- 370

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
                     T +SD  +  LA   ++K L L +  ++D  L AL+S + LTHL   G  
Sbjct: 371 ----------TALSDEVIPPLASFRAIKYLYLKSDFLSDPALHALSSASNLTHLGFCGNI 420

Query: 384 ITDSGAAYLRNFKNLRSLEICG 405
           ++DSG         LR L++ G
Sbjct: 421 LSDSGLLQFVPPAKLRVLDLSG 442


>gi|290998760|ref|XP_002681948.1| predicted protein [Naegleria gruberi]
 gi|284095574|gb|EFC49204.1| predicted protein [Naegleria gruberi]
          Length = 391

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 154/333 (46%), Gaps = 6/333 (1%)

Query: 89  NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL-ERCTRIHGG 147
           N   ++ D  L+++  L  LTSL       I    +   A L  L +LD+ +      G 
Sbjct: 53  NKKFKVDDETLQYIGELKQLTSLHIH---GIGIDNVWDIADLKQLTELDISDNKINSEGA 109

Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
            V  +    L  L+I   N   D   K +S L  L  L +S +++ +  + Y+  +  LT
Sbjct: 110 RVISESFKHLTKLDI--SNNTIDVGTKYISQLKQLTYLDVSNNEIEEEDVKYIGNMNGLT 167

Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
            L+++   +       +S L  +  L++    + D+G +  S++  L  LN+GFN I   
Sbjct: 168 SLSIQYNHIGNIGAQYISGLKQITTLSIYSGDIGDEGAKYISEMKQLTNLNIGFNNINIR 227

Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
             +H+  L  L  L++ +   G  GL  +T L  L  L   D+++ S G++++S +  L 
Sbjct: 228 GAIHISKLKQLTELSISANNFGSGGLKYITQLKQLTKLYCCDSEIDSEGVKYISEMKQLT 287

Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
            ++LS+  I+   ++ L  L  L  L +    + + G   ++ L  LTHLD+    ++D 
Sbjct: 288 DVDLSYNNINSEGVKYLNKLKKLTKLYIGGNDLGNKGAMYISRLNQLTHLDICRNNVSDE 347

Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           G   +   K L SL I    ++  GV++I+ ++
Sbjct: 348 GFKSISKMKQLSSLFISENTISGEGVEYIRKMT 380


>gi|290994522|ref|XP_002679881.1| leucine rich repeat protein [Naegleria gruberi]
 gi|284093499|gb|EFC47137.1| leucine rich repeat protein [Naegleria gruberi]
          Length = 340

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 117/243 (48%), Gaps = 25/243 (10%)

Query: 224 LSALGSLFYLNLNRCQLSDD-GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
           +  +  L +L++  C + DD G +  S +  L  LN+  N I  E   +L  L  L +L 
Sbjct: 95  IGKMKQLTFLDIRNCSMIDDKGAKYVSALNQLTFLNISQNNIGPEGAKYLSKLDQLTNLK 154

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
           ++S  IG EG  +++ +  L  L +S+  +G  G + +S ++                  
Sbjct: 155 INSNEIGPEGAKSISDMKQLTTLNISNNMIGMEGAKSISEIS------------------ 196

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
                S L  L++ + QI++ GL  ++ ++ LT LD  G  I D GA YL   KNLR L+
Sbjct: 197 -----SQLTILDISSNQISNEGLKFISEMSQLTSLDTNGNNIGDKGAKYLSELKNLRVLD 251

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
           I    + D G   I  L  LT LN+S N  + ++    +S +  L  LN+SN+ I  AG 
Sbjct: 252 ISKNFVYDNGADLISKLPQLTNLNISFN-EIGNQGAIYLSKMEKLTILNISNNLIGPAGA 310

Query: 463 RHL 465
           ++L
Sbjct: 311 KYL 313



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 133/262 (50%), Gaps = 3/262 (1%)

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGCP-VTAACLDSLSALGS 229
           D+ P   L+N+   ++   +        + G +++LT L++  C  +       +SAL  
Sbjct: 66  DLLPSRFLSNIVQFRVCVERKPGEMFYQIIGKMKQLTFLDIRNCSMIDDKGAKYVSALNQ 125

Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
           L +LN+++  +  +G +  SK+  L  L +  NEI  E    +  +  L +LN+ +  IG
Sbjct: 126 LTFLNISQNNIGPEGAKYLSKLDQLTNLKINSNEIGPEGAKSISDMKQLTTLNISNNMIG 185

Query: 290 DEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
            EG  +++ +   L  L++S  Q+ + GL+ +S ++ L S++ +   I D   + L+ L 
Sbjct: 186 MEGAKSISEISSQLTILDISSNQISNEGLKFISEMSQLTSLDTNGNNIGDKGAKYLSELK 245

Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
           +L+ L++    + D G   ++ L  LT+L++    I + GA YL   + L  L I    +
Sbjct: 246 NLRVLDISKNFVYDNGADLISKLPQLTNLNISFNEIGNQGAIYLSKMEKLTILNISNNLI 305

Query: 409 TDAGVKHIKDLSSLTLLNLSQN 430
             AG K++ ++  LT LN+++N
Sbjct: 306 GPAGAKYLGEMQQLTKLNINRN 327



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 104/202 (51%), Gaps = 4/202 (1%)

Query: 267 ECLVHLKG-LTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
           E    + G +  L  L++ +C  I D+G   ++ L  L  L +S   +G  G ++LS L 
Sbjct: 89  EMFYQIIGKMKQLTFLDIRNCSMIDDKGAKYVSALNQLTFLNISQNNIGPEGAKYLSKLD 148

Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG-LTHLDLFGAR 383
            L ++ ++   I     + ++ +  L +LN+    I   G  +++ ++  LT LD+   +
Sbjct: 149 QLTNLKINSNEIGPEGAKSISDMKQLTTLNISNNMIGMEGAKSISEISSQLTILDISSNQ 208

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
           I++ G  ++     L SL+  G  + D G K++ +L +L +L++S+N  + D   +LIS 
Sbjct: 209 ISNEGLKFISEMSQLTSLDTNGNNIGDKGAKYLSELKNLRVLDISKNF-VYDNGADLISK 267

Query: 444 LTGLVSLNVSNSRITSAGLRHL 465
           L  L +LN+S + I + G  +L
Sbjct: 268 LPQLTNLNISFNEIGNQGAIYL 289



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 145/316 (45%), Gaps = 11/316 (3%)

Query: 22  EVSLEAFRDCALQDL--CLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD 79
           E+  E  R C  QD    +  Y  V+ +WM+VI  Q  S L +           L+  + 
Sbjct: 16  EIIYEILRSCD-QDFKFIVMNYALVSKQWMNVI--QWYSKLELKFEKKREHIDDLLPSRF 72

Query: 80  CSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
            SN+  + F  C++   G + +  +  +  LT L  R  + I  +G K  + L  L  L+
Sbjct: 73  LSNI--VQFRVCVERKPGEMFYQIIGKMKQLTFLDIRNCSMIDDKGAKYVSALNQLTFLN 130

Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
           + +      G   L  L +L +L I   N I     K +S +  L +L IS + +   G 
Sbjct: 131 ISQNNIGPEGAKYLSKLDQLTNLKIN-SNEIGPEGAKSISDMKQLTTLNISNNMIGMEGA 189

Query: 198 AYLKGLQ-KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
             +  +  +LT+L++    ++   L  +S +  L  L+ N   + D G +  S++ +L+V
Sbjct: 190 KSISEISSQLTILDISSNQISNEGLKFISEMSQLTSLDTNGNNIGDKGAKYLSELKNLRV 249

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
           L++  N + D     +  L  L +LN+    IG++G + L+ +  L  L +S+  +G +G
Sbjct: 250 LDISKNFVYDNGADLISKLPQLTNLNISFNEIGNQGAIYLSKMEKLTILNISNNLIGPAG 309

Query: 317 LRHLSGLTNLESINLS 332
            ++L  +  L  +N++
Sbjct: 310 AKYLGEMQQLTKLNIN 325



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 113/242 (46%), Gaps = 26/242 (10%)

Query: 153 GLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
           G MK L  L+I+ C+ I D   K +S L  L  L IS + +   G  YL  L +LT L +
Sbjct: 96  GKMKQLTFLDIRNCSMIDDKGAKYVSALNQLTFLNISQNNIGPEGAKYLSKLDQLTNLKI 155

Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS-LKVLNLGFNEITDECLV 270
               +      S+S +  L  LN++   +  +G +  S+I S L +L++  N+I++E L 
Sbjct: 156 NSNEIGPEGAKSISDMKQLTTLNISNNMIGMEGAKSISEISSQLTILDISSNQISNEGLK 215

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-------------------- 310
            +  ++ L SL+ +   IGD+G   L+ L NL+ L++S                      
Sbjct: 216 FISEMSQLTSLDTNGNNIGDKGAKYLSELKNLRVLDISKNFVYDNGADLISKLPQLTNLN 275

Query: 311 ----QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
               ++G+ G  +LS +  L  +N+S   I     + L  +  L  LN++   ++ + LA
Sbjct: 276 ISFNEIGNQGAIYLSKMEKLTILNISNNLIGPAGAKYLGEMQQLTKLNINRNYLSVSELA 335

Query: 367 AL 368
            L
Sbjct: 336 LL 337


>gi|290983152|ref|XP_002674293.1| predicted protein [Naegleria gruberi]
 gi|284087882|gb|EFC41549.1| predicted protein [Naegleria gruberi]
          Length = 338

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 118/223 (52%), Gaps = 2/223 (0%)

Query: 160 LNIKWCNCITDSDMKP--LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
           +N+K+   + DS  KP  ++ +  L SL IS +++ D G+ ++  +++L  L +    + 
Sbjct: 112 VNVKFSKRLFDSIEKPTFITEMKQLTSLDISNNRIGDEGVKFISEMKQLISLGIYNNGIG 171

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
              + S+  +  L  L +   Q+ D+G +  S++  L  L++  N+  DE +  +  +  
Sbjct: 172 DEGVKSIIEMKRLTSLGIGGNQIGDEGAKSISEMKQLTSLDINNNQTGDEGVKFICEMKQ 231

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           L SL + +  IGDEG  +++ +  L  L +S+ ++G  G   +S L  L S+++ +  I 
Sbjct: 232 LTSLTIYNNRIGDEGAKSISEMKQLTSLNISENRIGDEGAIFISELKQLTSLDICYNRIG 291

Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
           D   + +  +  LKSL++   QI D G+  ++ +T LT LD+F
Sbjct: 292 DKEAKFICEMKQLKSLDIGGNQIGDEGVKFISEMTRLTSLDIF 334



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 108/204 (52%)

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           ++ +  L  L+++  ++ D+G +  S++  L  L +  N I DE +  +  +  L SL +
Sbjct: 130 ITEMKQLTSLDISNNRIGDEGVKFISEMKQLISLGIYNNGIGDEGVKSIIEMKRLTSLGI 189

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
               IGDEG  +++ +  L  L++++ Q G  G++ +  +  L S+ +    I D   + 
Sbjct: 190 GGNQIGDEGAKSISEMKQLTSLDINNNQTGDEGVKFICEMKQLTSLTIYNNRIGDEGAKS 249

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           ++ +  L SLN+   +I D G   ++ L  LT LD+   RI D  A ++   K L+SL+I
Sbjct: 250 ISEMKQLTSLNISENRIGDEGAIFISELKQLTSLDICYNRIGDKEAKFICEMKQLKSLDI 309

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNL 427
            G  + D GVK I +++ LT L++
Sbjct: 310 GGNQIGDEGVKFISEMTRLTSLDI 333



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 110/213 (51%), Gaps = 4/213 (1%)

Query: 243 DGCEKFSKIGSLKVL---NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
           D  EK + I  +K L   ++  N I DE +  +  +  L SL + + GIGDEG+ ++  +
Sbjct: 122 DSIEKPTFITEMKQLTSLDISNNRIGDEGVKFISEMKQLISLGIYNNGIGDEGVKSIIEM 181

Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
             L  L +   Q+G  G + +S +  L S++++     D  ++ +  +  L SL +   +
Sbjct: 182 KRLTSLGIGGNQIGDEGAKSISEMKQLTSLDINNNQTGDEGVKFICEMKQLTSLTIYNNR 241

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
           I D G  +++ +  LT L++   RI D GA ++   K L SL+IC   + D   K I ++
Sbjct: 242 IGDEGAKSISEMKQLTSLNISENRIGDEGAIFISELKQLTSLDICYNRIGDKEAKFICEM 301

Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
             L  L++  N  + D+ ++ IS +T L SL++
Sbjct: 302 KQLKSLDIGGN-QIGDEGVKFISEMTRLTSLDI 333



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 91/179 (50%), Gaps = 5/179 (2%)

Query: 34  QDLCLGQYP-GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
           Q + LG Y  G+ D+ +  I  +   L S+ + G+ + D G   + +   L SLD N   
Sbjct: 159 QLISLGIYNNGIGDEGVKSII-EMKRLTSLGIGGNQIGDEGAKSISEMKQLTSLDINNN- 216

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           Q  D G++ +  +  LTSL+   NN I  +G K+ + +  L  L++        G + + 
Sbjct: 217 QTGDEGVKFICEMKQLTSLTI-YNNRIGDEGAKSISEMKQLTSLNISENRIGDEGAIFIS 275

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
            L +L SL+I + N I D + K +  +  LKSL I  +++ D G+ ++  + +LT L++
Sbjct: 276 ELKQLTSLDICY-NRIGDKEAKFICEMKQLKSLDIGGNQIGDEGVKFISEMTRLTSLDI 333



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 107/230 (46%), Gaps = 27/230 (11%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           ++   L S+D+S + + D G+  + +   L SL   +   I D G++ +  +  LTSL  
Sbjct: 131 TEMKQLTSLDISNNRIGDEGVKFISEMKQLISLGI-YNNGIGDEGVKSIIEMKRLTSLGI 189

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
              N I  +G K+ + +  L  LD+        G+  +  + +L SL I + N I D   
Sbjct: 190 -GGNQIGDEGAKSISEMKQLTSLDINNNQTGDEGVKFICEMKQLTSLTI-YNNRIGDEGA 247

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           K +S +  L SL IS +++ D G  ++  L++LT L++        C + +    + F  
Sbjct: 248 KSISEMKQLTSLNISENRIGDEGAIFISELKQLTSLDI--------CYNRIGDKEAKFI- 298

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
                      CE    +  LK L++G N+I DE +  +  +T L SL++
Sbjct: 299 -----------CE----MKQLKSLDIGGNQIGDEGVKFISEMTRLTSLDI 333


>gi|290984031|ref|XP_002674731.1| predicted protein [Naegleria gruberi]
 gi|284088323|gb|EFC41987.1| predicted protein [Naegleria gruberi]
          Length = 356

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 122/258 (47%), Gaps = 8/258 (3%)

Query: 173 MKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
           MK L+ L       I C+  + + G  Y+  L++LT L +    +       +S L  L 
Sbjct: 97  MKSLTEL-------IGCNNNIGNEGAKYISKLKQLTHLYILNNEIDDEGAKYISELNQLV 149

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
            L+++   +  +G +  S++  L  L++  N I  E   H+  +  L  LN+ +  IG E
Sbjct: 150 SLDISYNNIGVEGAKYISELKQLTNLDISVNHIGAEGAQHIAEMNQLTILNISTNNIGYE 209

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
           G   +  L  L CL + +  +   G +++S +  L  +N+S+  I     + ++ L  L 
Sbjct: 210 GAKYIGKLKQLTCLTIFNNNIDVEGAKYISEMKQLTDLNISYNNIDVEGAKYISELKQLT 269

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
            L++   QI   G+  +  +  LT L      I D GA Y+   K L +L+I    +++ 
Sbjct: 270 DLDISINQIGAKGVQYIAEMNQLTILSASHNNIGDEGAKYISEMKQLTNLDISNNSISNE 329

Query: 412 GVKHIKDLSSLTLLNLSQ 429
           GVK I+++  LT+LN+ Q
Sbjct: 330 GVKCIEEMKHLTVLNIRQ 347



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 115/224 (51%), Gaps = 1/224 (0%)

Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
           + ++G +  SK+  L  L +  NEI DE   ++  L  L SL++    IG EG   ++ L
Sbjct: 110 IGNEGAKYISKLKQLTHLYILNNEIDDEGAKYISELNQLVSLDISYNNIGVEGAKYISEL 169

Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
             L  L++S   +G+ G +H++ +  L  +N+S   I     + +  L  L  L +    
Sbjct: 170 KQLTNLDISVNHIGAEGAQHIAEMNQLTILNISTNNIGYEGAKYIGKLKQLTCLTIFNNN 229

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
           I   G   ++ +  LT L++    I   GA Y+   K L  L+I    +   GV++I ++
Sbjct: 230 IDVEGAKYISEMKQLTDLNISYNNIDVEGAKYISELKQLTDLDISINQIGAKGVQYIAEM 289

Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
           + LT+L+ S N N+ D+  + IS +  L +L++SN+ I++ G++
Sbjct: 290 NQLTILSASHN-NIGDEGAKYISEMKQLTNLDISNNSISNEGVK 332



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 109/229 (47%), Gaps = 4/229 (1%)

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
           LK L  L  LN    N I D   K +S L  L SL IS + +   G  Y+  L++LT L+
Sbjct: 121 LKQLTHLYILN----NEIDDEGAKYISELNQLVSLDISYNNIGVEGAKYISELKQLTNLD 176

Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
           +    + A     ++ +  L  LN++   +  +G +   K+  L  L +  N I  E   
Sbjct: 177 ISVNHIGAEGAQHIAEMNQLTILNISTNNIGYEGAKYIGKLKQLTCLTIFNNNIDVEGAK 236

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
           ++  +  L  LN+    I  EG   ++ L  L  L++S  Q+G+ G+++++ +  L  ++
Sbjct: 237 YISEMKQLTDLNISYNNIDVEGAKYISELKQLTDLDISINQIGAKGVQYIAEMNQLTILS 296

Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
            S   I D   + ++ +  L +L++    I++ G+  +  +  LT L++
Sbjct: 297 ASHNNIGDEGAKYISEMKQLTNLDISNNSISNEGVKCIEEMKHLTVLNI 345



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 111/262 (42%), Gaps = 26/262 (9%)

Query: 94  ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
           I + G +++  L  LT L +  NN I  +G K  + L  LV LD+               
Sbjct: 110 IGNEGAKYISKLKQLTHL-YILNNEIDDEGAKYISELNQLVSLDISY------------- 155

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
                       N I     K +S L  L +L IS + +   G  ++  + +LT+LN+  
Sbjct: 156 ------------NNIGVEGAKYISELKQLTNLDISVNHIGAEGAQHIAEMNQLTILNIST 203

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
             +       +  L  L  L +    +  +G +  S++  L  LN+ +N I  E   ++ 
Sbjct: 204 NNIGYEGAKYIGKLKQLTCLTIFNNNIDVEGAKYISEMKQLTDLNISYNNIDVEGAKYIS 263

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
            L  L  L++    IG +G+  +  +  L  L  S   +G  G +++S +  L ++++S 
Sbjct: 264 ELKQLTDLDISINQIGAKGVQYIAEMNQLTILSASHNNIGDEGAKYISEMKQLTNLDISN 323

Query: 334 TGISDGSLRKLAGLSSLKSLNL 355
             IS+  ++ +  +  L  LN+
Sbjct: 324 NSISNEGVKCIEEMKHLTVLNI 345



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 101/212 (47%), Gaps = 15/212 (7%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+ + L+S+D+S +++   G  ++ +   L +LD +    I   G +H+  ++ LT L+ 
Sbjct: 143 SELNQLVSLDISYNNIGVEGAKYISELKQLTNLDISVN-HIGAEGAQHIAEMNQLTILNI 201

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG------LMKLESLNIKWCNC 167
             NN I  +G K    L  L       C  I    ++++G      + +L  LNI + N 
Sbjct: 202 STNN-IGYEGAKYIGKLKQLT------CLTIFNNNIDVEGAKYISEMKQLTDLNISY-NN 253

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           I     K +S L  L  L IS +++   G+ Y+  + +LT+L+     +       +S +
Sbjct: 254 IDVEGAKYISELKQLTDLDISINQIGAKGVQYIAEMNQLTILSASHNNIGDEGAKYISEM 313

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
             L  L+++   +S++G +   ++  L VLN+
Sbjct: 314 KQLTNLDISNNSISNEGVKCIEEMKHLTVLNI 345


>gi|344169683|emb|CCA82044.1| putative leucine-rich-repeat type III effector protein (GALA1-like)
           [blood disease bacterium R229]
          Length = 590

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 111/375 (29%), Positives = 170/375 (45%), Gaps = 7/375 (1%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
           ++L  + LSG DVTD  L  L   ++L++LD + C  QI+  G+ HL  L  L  L+   
Sbjct: 121 AALEKLTLSG-DVTDDDLKGLP--ASLKALDLSDCRAQITSEGIAHLSKLP-LVRLNVSH 176

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
           N  I A+G +  A +  L +LD+        G   L     L  LN+   N I D   + 
Sbjct: 177 NR-IDAEGARLLAAMPTLTELDISHNDIRADGAQALADSATLTLLNVG-NNRIGDRGAQA 234

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           L+  T L SL  S + +  +G+  L     L  L+L   P+      +L+   +L  LN+
Sbjct: 235 LAANTKLTSLNASANGIGSAGVQALAANATLAALDLSCTPIDEESAQALARNTTLTSLNV 294

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
              +L D G    +   +L  LN+  NEI  E    L   T+L SL++    +G +G   
Sbjct: 295 RLSRLGDAGARALAATTTLTSLNVSLNEIGPEGAKALANNTSLTSLDIGGNKVGVDGAQA 354

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           L     L  L +   ++  +G + L+  T L S+++S  G+     R      +L SL +
Sbjct: 355 LATSMTLTSLVIHRNRIEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNETLTSLRI 414

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
               I D G   L   T LT LD+   RI ++GA  L     L SL I G  +   GV  
Sbjct: 415 ATNMIGDEGAKWLARNTTLTSLDIGENRIGETGAQALAGNTKLTSLNISGNAIGMMGVLR 474

Query: 416 IKDLSSLTLLNLSQN 430
           +   ++L  LN+S+N
Sbjct: 475 LARNTTLAALNVSRN 489



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 99/324 (30%), Positives = 153/324 (47%), Gaps = 30/324 (9%)

Query: 168 ITDSDMKPLSGLTNLKSLQIS-C-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           +TD D+K L    +LK+L +S C +++T  GIA+L  L  L  LN+    + A     L+
Sbjct: 132 VTDDDLKGLPA--SLKALDLSDCRAQITSEGIAHLSKL-PLVRLNVSHNRIDAEGARLLA 188

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
           A+ +L  L+++   +  DG +  +   +L +LN+G N I D     L   T L SLN  +
Sbjct: 189 AMPTLTELDISHNDIRADGAQALADSATLTLLNVGNNRIGDRGAQALAANTKLTSLNASA 248

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
            GIG  G+  L     L  L+LS T +     + L+  T L S+N+  + + D   R LA
Sbjct: 249 NGIGSAGVQALAANATLAALDLSCTPIDEESAQALARNTTLTSLNVRLSRLGDAGARALA 308

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG------------------------ 381
             ++L SLN+   +I   G  AL + T LT LD+ G                        
Sbjct: 309 ATTTLTSLNVSLNEIGPEGAKALANNTSLTSLDIGGNKVGVDGAQALATSMTLTSLVIHR 368

Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
            RI  +GA  L N   L SL+I   GL   G +   D  +LT L ++ N  + D+  + +
Sbjct: 369 NRIEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNETLTSLRIATNM-IGDEGAKWL 427

Query: 442 SGLTGLVSLNVSNSRITSAGLRHL 465
           +  T L SL++  +RI   G + L
Sbjct: 428 ARNTTLTSLDIGENRIGETGAQAL 451


>gi|168701211|ref|ZP_02733488.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 702

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 126/466 (27%), Positives = 202/466 (43%), Gaps = 69/466 (14%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
             L S+ L  + VTD+G+ HL     L++LD +  ++++D GL+ L GL NL +L+    
Sbjct: 218 PKLKSLRLERTQVTDAGMKHLAAVEGLEALDLSR-LRVTDAGLKELAGLKNLRALTLLFT 276

Query: 117 NAITAQGMKAFAG--LINL------VKL----DLERCTRIHG----------GLVNLKGL 154
             +T  G++ FAG  L +L      VK     D+  C  +             +  L GL
Sbjct: 277 Q-VTGAGLRPFAGAGLTHLALSGSKVKAADVADVVACRALAALAVEGRWPADAVAQLAGL 335

Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK------------- 201
            +L SL+ +  + +    +  LSG + L+++ ++   VTD  +A L+             
Sbjct: 336 PELRSLHFQ-SDLLDGKVLAELSGASKLEAVHLAT--VTDDALAGLRRAGKLHTIPQARA 392

Query: 202 ------GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
                 G  ++  L+L G PVT A L  L+   +L  L L   +++  G    + +  L 
Sbjct: 393 ERGRPAGPDEVVHLDLSGQPVTGAGLKELTVFRNLDTLVLRNTRVAG-GIGALADLRKLS 451

Query: 256 VLNLGF-----NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN-LTGLCNLKCLE--L 307
            L L         +T   +  L  L  LE L+L   G+   G+   +  + NL  L    
Sbjct: 452 ALTLPLYGGDDRAVTPAEMRRLAALDTLEELHLH--GVLVPGMARAVASIPNLTTLSGTF 509

Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLA 366
            DT      LR    L +L ++     GI+D     +A +  L+ ++L D R++TD G  
Sbjct: 510 QDTD-----LREFPALKHLRALMTGGAGITDEGAWDVARMKRLECVSLSDTRRLTDAGAR 564

Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
            L +L  L HL L    +TD G   L   K LR+L +    +  AGV  +     L  L+
Sbjct: 565 DLAALPNLKHLCLSRTGVTDEGVQVLAGVKTLRTLWLSEIKVGPAGVAALGRHPGLVALD 624

Query: 427 LSQNCNLTDKTLELISGLTGLVSLNVSNS---RITSAGLRHLNHAR 469
           LS          E ++G+T L  LN++ +     T A L  L H R
Sbjct: 625 LSGAPR---GEAEPLAGITTLEYLNLAGALTGERTLAALAKLPHLR 667



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 174/407 (42%), Gaps = 76/407 (18%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
           V D  M  +A+    L ++DLS   VTD+GL  L    NL++L   F  Q++  GL    
Sbjct: 230 VTDAGMKHLAAV-EGLEALDLSRLRVTDAGLKELAGLKNLRALTLLFT-QVTGAGLRPFA 287

Query: 104 GLSNLTSLSF----------------RRNNAITAQG------MKAFAGLINLVKLDLERC 141
           G + LT L+                 R   A+  +G      +   AGL  L  L  +  
Sbjct: 288 G-AGLTHLALSGSKVKAADVADVVACRALAALAVEGRWPADAVAQLAGLPELRSLHFQSD 346

Query: 142 TRIHGGLVNLKGLMKLESLNIKWC------------------------------------ 165
                 L  L G  KLE++++                                       
Sbjct: 347 LLDGKVLAELSGASKLEAVHLATVTDDALAGLRRAGKLHTIPQARAERGRPAGPDEVVHL 406

Query: 166 ----NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-----EGCPV 216
                 +T + +K L+   NL +L +  ++V   GI  L  L+KL+ L L     +   V
Sbjct: 407 DLSGQPVTGAGLKELTVFRNLDTLVLRNTRVA-GGIGALADLRKLSALTLPLYGGDDRAV 465

Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
           T A +  L+AL +L  L+L+   L        + I +L  L+  F    D  L     L 
Sbjct: 466 TPAEMRRLAALDTLEELHLHGV-LVPGMARAVASIPNLTTLSGTFQ---DTDLREFPALK 521

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTG 335
           +L +L     GI DEG  ++  +  L+C+ LSDT+ +  +G R L+ L NL+ + LS TG
Sbjct: 522 HLRALMTGGAGITDEGAWDVARMKRLECVSLSDTRRLTDAGARDLAALPNLKHLCLSRTG 581

Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
           ++D  ++ LAG+ +L++L L   ++   G+AAL    GL  LDL GA
Sbjct: 582 VTDEGVQVLAGVKTLRTLWLSEIKVGPAGVAALGRHPGLVALDLSGA 628



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 106/208 (50%), Gaps = 3/208 (1%)

Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
           + +KI ++  + L  +  T   L  L     L  L+L    +GD+ L  L     LK L 
Sbjct: 165 EIAKIDNVTYIGLSSSRDTGAKLRALAAAKGLTHLDLSFSRVGDDDLKLLAAFPKLKSLR 224

Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
           L  TQV  +G++HL+ +  LE+++LS   ++D  L++LAGL +L++L L   Q+T  GL 
Sbjct: 225 LERTQVTDAGMKHLAAVEGLEALDLSRLRVTDAGLKELAGLKNLRALTLLFTQVTGAGLR 284

Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
                 GLTHL L G+++  +  A +   + L +L + G    DA V  +  L  L  L+
Sbjct: 285 PFAG-AGLTHLALSGSKVKAADVADVVACRALAALAVEGRWPADA-VAQLAGLPELRSLH 342

Query: 427 LSQNCNLTDKTLELISGLTGLVSLNVSN 454
              +  L  K L  +SG + L +++++ 
Sbjct: 343 FQSDL-LDGKVLAELSGASKLEAVHLAT 369



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 132/302 (43%), Gaps = 36/302 (11%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF-NFCIQISDGGLEHLRGLSNLT-SLSFRR 115
            ++ +DLSG  VT +GL  L    NL +L   N  +    G L  LR LS LT  L    
Sbjct: 402 EVVHLDLSGQPVTGAGLKELTVFRNLDTLVLRNTRVAGGIGALADLRKLSALTLPLYGGD 461

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDM 173
           + A+T   M+  A L  L +L L      HG LV    + +  + +L         D+D+
Sbjct: 462 DRAVTPAEMRRLAALDTLEELHL------HGVLVPGMARAVASIPNLTT-LSGTFQDTDL 514

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           +    L +L++L    + +TD G   +  +++L  ++L                      
Sbjct: 515 REFPALKHLRALMTGGAGITDEGAWDVARMKRLECVSLS--------------------- 553

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
             +  +L+D G    + + +LK L L    +TDE +  L G+  L +L L    +G  G+
Sbjct: 554 --DTRRLTDAGARDLAALPNLKHLCLSRTGVTDEGVQVLAGVKTLRTLWLSEIKVGPAGV 611

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
             L     L  L+LS    G +    L+G+T LE +NL+     + +L  LA L  L+ L
Sbjct: 612 AALGRHPGLVALDLSGAPRGEA--EPLAGITTLEYLNLAGALTGERTLAALAKLPHLRVL 669

Query: 354 NL 355
           +L
Sbjct: 670 HL 671



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 125/264 (47%), Gaps = 21/264 (7%)

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           + D D+K L+    LKSL++  ++VTD+G+ +L  ++ L  L+L    VT A L  L+ L
Sbjct: 206 VGDDDLKLLAAFPKLKSLRLERTQVTDAGMKHLAAVEGLEALDLSRLRVTDAGLKELAGL 265

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
            +L  L L   Q++  G   F+  G L  L L  +++    +  +     L +L ++   
Sbjct: 266 KNLRALTLLFTQVTGAGLRPFAGAG-LTHLALSGSKVKAADVADVVACRALAALAVEGRW 324

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
             D  +  L GL  L+ L      +    L  LSG + LE+++L+   ++D +   LAGL
Sbjct: 325 PAD-AVAQLAGLPELRSLHFQSDLLDGKVLAELSGASKLEAVHLAT--VTDDA---LAGL 378

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN-----LRSLE 402
                L+   +   + G  A      + HLDL G  +T +G   L  F+N     LR+  
Sbjct: 379 RRAGKLHTIPQARAERGRPA--GPDEVVHLDLSGQPVTGAGLKELTVFRNLDTLVLRNTR 436

Query: 403 ICG--GGLTDAGVKHIKDLSSLTL 424
           + G  G L D     ++ LS+LTL
Sbjct: 437 VAGGIGALAD-----LRKLSALTL 455



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 109/247 (44%), Gaps = 30/247 (12%)

Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
           L +L+L+  ++ DD  +  +    LK L L   ++TD  + HL  +  LE+L+L    + 
Sbjct: 196 LTHLDLSFSRVGDDDLKLLAAFPKLKSLRLERTQVTDAGMKHLAAVEGLEALDLSRLRVT 255

Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
           D GL  L GL NL+ L L  TQV  +GLR  +G   L  + LS + +    +  +    +
Sbjct: 256 DAGLKELAGLKNLRALTLLFTQVTGAGLRPFAG-AGLTHLALSGSKVKAADVADVVACRA 314

Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHL-------DLFGARITDSGAAYLRNFKNLRSLE 402
           L +L ++ R   D    A+  L GL  L       DL   ++     A L     L ++ 
Sbjct: 315 LAALAVEGRWPAD----AVAQLAGLPELRSLHFQSDLLDGKVL----AELSGASKLEAVH 366

Query: 403 ICGGGLTD---AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
           +    +TD   AG++    L ++      +            +G   +V L++S   +T 
Sbjct: 367 LA--TVTDDALAGLRRAGKLHTIPQARAERGRP---------AGPDEVVHLDLSGQPVTG 415

Query: 460 AGLRHLN 466
           AGL+ L 
Sbjct: 416 AGLKELT 422



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 1/96 (1%)

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
           GLTHLDL  +R+ D     L  F  L+SL +    +TDAG+KH+  +  L  L+LS+   
Sbjct: 195 GLTHLDLSFSRVGDDDLKLLAAFPKLKSLRLERTQVTDAGMKHLAAVEGLEALDLSR-LR 253

Query: 433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHA 468
           +TD  L+ ++GL  L +L +  +++T AGLR    A
Sbjct: 254 VTDAGLKELAGLKNLRALTLLFTQVTGAGLRPFAGA 289


>gi|300691489|ref|YP_003752484.1| type III effector protein [Ralstonia solanacearum PSI07]
 gi|299078549|emb|CBJ51205.2| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
           solanacearum PSI07]
          Length = 533

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 159/360 (44%), Gaps = 31/360 (8%)

Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC----ITDSDMKPLSGLTNLKSLQIS 188
           L +LDL RC     G +   G+  L  L +   N     I     + L+    L SL +S
Sbjct: 141 LTELDLSRCR----GPITAAGIAHLSHLPLVRLNVRDQRIGVEGARLLANHPTLTSLDVS 196

Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
             ++   G   L    +LT L++    + A    +L+A  +L  L+++   + D+G    
Sbjct: 197 NGRIGPEGARALADNTRLTTLSVSHNRIGAEGAKALAASETLTSLDISENGIGDEGACAL 256

Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
           +    L  LN+  N I  E    L     L SL++    IGDEG+  L     L  L + 
Sbjct: 257 ATNTKLTTLNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVE 316

Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
            T+VG+ G+  L+    L S+ +    I D   R LA  +SL +L++++  I+  G  AL
Sbjct: 317 RTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESNGISPAGAQAL 376

Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
            + T LT L+L    I D+GA        L SL +   GL+DAG   +    ++T L+  
Sbjct: 377 AANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNGLSDAGATILAASKTMTTLDAG 436

Query: 429 QN-----------CNLTDKTLEL------------ISGLTGLVSLNVSNSRITSAGLRHL 465
            N            N T  TL++            ++  T L SL++ N+R+T AG+R L
Sbjct: 437 DNTIRDAGARALAANRTLTTLDVRSNEIENAGARALAANTWLASLDLRNNRVTEAGVRAL 496



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 166/355 (46%), Gaps = 13/355 (3%)

Query: 114 RRNNAITAQGMKAFA-GLINLVKLDLER-CTRIHGGLVNLK---GLMKLESLNIKWCNCI 168
           RR+  +  Q ++A +  L   V+ D+ +   R   GL  +K       LE L +      
Sbjct: 72  RRSKPLAVQRLRAVSKPLKAAVEADMRQLVIRDRAGLAGVKRAGNYPALEKLTL--IGPF 129

Query: 169 TDSDMKPLSGLTNLKSLQIS-CS-KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
           TD+D++ L    +L  L +S C   +T +GIA+L  L  L  LN+    +       L+ 
Sbjct: 130 TDNDLRGLPA--SLTELDLSRCRGPITAAGIAHLSHL-PLVRLNVRDQRIGVEGARLLAN 186

Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
             +L  L+++  ++  +G    +    L  L++  N I  E    L     L SL++   
Sbjct: 187 HPTLTSLDVSNGRIGPEGARALADNTRLTTLSVSHNRIGAEGAKALAASETLTSLDISEN 246

Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
           GIGDEG   L     L  L ++  ++G  G + L+    L S+++    I D  +R LA 
Sbjct: 247 GIGDEGACALATNTKLTTLNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAA 306

Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
            + L +LN++  ++   G+ AL +   LT L +    I D+GA  L    +L +L I   
Sbjct: 307 NARLTTLNVERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESN 366

Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
           G++ AG + +   ++LT LNL  N  + D   +  S  T L+SL+V  + ++ AG
Sbjct: 367 GISPAGAQALAANTTLTTLNLGYN-GIGDAGAQAWSANTTLISLSVRRNGLSDAG 420



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 112/388 (28%), Positives = 175/388 (45%), Gaps = 14/388 (3%)

Query: 57  SSLLSVDLSG--SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN---LTSL 111
           +SL  +DLS     +T +G+ HL   S+L  +  N   Q    G+E  R L+N   LTSL
Sbjct: 139 ASLTELDLSRCRGPITAAGIAHL---SHLPLVRLNVRDQRI--GVEGARLLANHPTLTSL 193

Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
               N  I  +G +A A    L  L +        G   L     L SL+I   N I D 
Sbjct: 194 DVS-NGRIGPEGARALADNTRLTTLSVSHNRIGAEGAKALAASETLTSLDIS-ENGIGDE 251

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
               L+  T L +L ++ +++   G   L   + LT L++ G  +    + +L+A   L 
Sbjct: 252 GACALATNTKLTTLNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLT 311

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
            LN+ R ++  DG    +   +L  L +  N I D     L   T+L +L+++S GI   
Sbjct: 312 TLNVERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESNGISPA 371

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
           G   L     L  L L    +G +G +  S  T L S+++   G+SD     LA   ++ 
Sbjct: 372 GAQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNGLSDAGATILAASKTMT 431

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
           +L+     I D G  AL +   LT LD+    I ++GA  L     L SL++    +T+A
Sbjct: 432 TLDAGDNTIRDAGARALAANRTLTTLDVRSNEIENAGARALAANTWLASLDLRNNRVTEA 491

Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
           GV+ +  L++ TL +L  + N   K  E
Sbjct: 492 GVRAL--LANRTLSSLGVSFNYCSKPTE 517



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 103/230 (44%), Gaps = 3/230 (1%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           + G +L S+D+ G+D+ D G+  L   + L +L+     ++   G+  L     LTSL  
Sbjct: 281 AAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVERT-RVGADGVGALAASKTLTSLRI 339

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
             NN I   G +A A   +L  L +E       G   L     L +LN+ + N I D+  
Sbjct: 340 DSNN-IGDAGARALATNTSLTTLHIESNGISPAGAQALAANTTLTTLNLGY-NGIGDAGA 397

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           +  S  T L SL +  + ++D+G   L   + +T L+     +  A   +L+A  +L  L
Sbjct: 398 QAWSANTTLISLSVRRNGLSDAGATILAASKTMTTLDAGDNTIRDAGARALAANRTLTTL 457

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           ++   ++ + G    +    L  L+L  N +T+  +  L     L SL +
Sbjct: 458 DVRSNEIENAGARALAANTWLASLDLRNNRVTEAGVRALLANRTLSSLGV 507


>gi|326679785|ref|XP_002660968.2| PREDICTED: hypothetical protein LOC100332407 [Danio rerio]
          Length = 537

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 111/401 (27%), Positives = 192/401 (47%), Gaps = 23/401 (5%)

Query: 5   DISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIAS----QGSSLL 60
           ++++ + + +   R L   +LE F  C LQ   L  YP   ++ +  + +    +  S L
Sbjct: 111 ELAELLLSHMARERLLRPRTLELFFGCPLQKFVLNCYPYTTNELLRQLRAFTCLKHLSFL 170

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           +  L    +TD+GL  L + S LQ L+ + C +++D  L+H+ GL +LT L+  +   ++
Sbjct: 171 NSPL----ITDAGLSVLSNLSKLQHLNLSSCSKLTDSCLQHITGLRSLTFLALDQTK-VS 225

Query: 121 AQGMKAF--AGLINLVKLDLERCTRIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLS 177
             G+  +  +G   L +L L +       L  L   + +L  L+IK       SD+  L+
Sbjct: 226 DAGLLLYLQSGSSALCQLSLNQTAITESTLRVLPASVPQLRMLSIKHTKV---SDVSALA 282

Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN- 236
            L NL++L +  + V ++ +  L     L+ L+L G PV A    +L  +  L    L  
Sbjct: 283 ELKNLQTLHLDGTGVQENSLQCLASHPSLSALSLAGIPV-ADGNHTLEIIAGLRLTQLTL 341

Query: 237 --RCQLSDDGCEKFSK-IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
             R  ++D G    S+    L++    + ++TD  +  L  +T L+ L+L +  + D GL
Sbjct: 342 PGRHSVTDSGLSFLSRQTLLLELDLTDYTQLTDHGITQLSSMTRLKKLSLSNTQVSDSGL 401

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRK-LAGLSSLK 351
             L  L  L+ L L  T V S G+  L + L +L+ + L+ T + D  +R+ L     L 
Sbjct: 402 QGLIRLKELQELCLDRTAVTSRGVAALITHLPHLQVMGLASTQVGDTVIRRGLVHCPQLL 461

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
            LNL   +ITD GL  L  +  L+ ++L G  +T  G A L
Sbjct: 462 KLNLSRTRITDQGLKFLCRMQ-LSQVNLDGTGVTLVGIANL 501



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 141/291 (48%), Gaps = 28/291 (9%)

Query: 195 SGIAYLKGLQKLTLLNLEGCPV-----------TAACLDSLSALGSLFYLN-LNRCQLSD 242
           S +A  + L+  TL    GCP+           T   L  L A   L +L+ LN   ++D
Sbjct: 118 SHMARERLLRPRTLELFFGCPLQKFVLNCYPYTTNELLRQLRAFTCLKHLSFLNSPLITD 177

Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV-----NL 296
            G    S +  L+ LNL   +++TD CL H+ GL +L  L LD   + D GL+       
Sbjct: 178 AGLSVLSNLSKLQHLNLSSCSKLTDSCLQHITGLRSLTFLALDQTKVSDAGLLLYLQSGS 237

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           + LC L    L+ T +  S LR L   +  L  +++  T +SD S   LA L +L++L+L
Sbjct: 238 SALCQL---SLNQTAITESTLRVLPASVPQLRMLSIKHTKVSDVS--ALAELKNLQTLHL 292

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG---LTDAG 412
           D   + +  L  L S   L+ L L G  + D G   L     LR  ++   G   +TD+G
Sbjct: 293 DGTGVQENSLQCLASHPSLSALSLAGIPVAD-GNHTLEIIAGLRLTQLTLPGRHSVTDSG 351

Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
           +  +   + L  L+L+    LTD  +  +S +T L  L++SN++++ +GL+
Sbjct: 352 LSFLSRQTLLLELDLTDYTQLTDHGITQLSSMTRLKKLSLSNTQVSDSGLQ 402



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 157/337 (46%), Gaps = 40/337 (11%)

Query: 166 NCI---TDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGC-PVTAAC 220
           NC    T+  ++ L   T LK L    S  +TD+G++ L  L KL  LNL  C  +T +C
Sbjct: 145 NCYPYTTNELLRQLRAFTCLKHLSFLNSPLITDAGLSVLSNLSKLQHLNLSSCSKLTDSC 204

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE--ITDECLVHLKG-LTN 277
           L  ++ L SL +L L++ ++SD G   + + GS  +  L  N+  IT+  L  L   +  
Sbjct: 205 LQHITGLRSLTFLALDQTKVSDAGLLLYLQSGSSALCQLSLNQTAITESTLRVLPASVPQ 264

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           L  L++    + D  +  L  L NL+ L L  T V  + L+ L+   +L +++L+   ++
Sbjct: 265 LRMLSIKHTKVSD--VSALAELKNLQTLHLDGTGVQENSLQCLASHPSLSALSLAGIPVA 322

Query: 338 DG--SLRKLAGLSSLKSLNLDARQ-ITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLR 393
           DG  +L  +AGL  L  L L  R  +TD+GL+ L+     L        ++TD G   L 
Sbjct: 323 DGNHTLEIIAGLR-LTQLTLPGRHSVTDSGLSFLSRQTLLLELDLTDYTQLTDHGITQLS 381

Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT-------- 445
           +   L+ L +    ++D+G++ +  L  L  L L +    +     LI+ L         
Sbjct: 382 SMTRLKKLSLSNTQVSDSGLQGLIRLKELQELCLDRTAVTSRGVAALITHLPHLQVMGLA 441

Query: 446 -----------GLV------SLNVSNSRITSAGLRHL 465
                      GLV       LN+S +RIT  GL+ L
Sbjct: 442 STQVGDTVIRRGLVHCPQLLKLNLSRTRITDQGLKFL 478


>gi|209154162|gb|ACI33313.1| F-box/LRR-repeat protein 14 [Salmo salar]
          Length = 403

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 110/329 (33%), Positives = 170/329 (51%), Gaps = 32/329 (9%)

Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKL 157
           H RG+  +  LS RR+ +   QGM       N+  L+L  C  +     G   ++ +  L
Sbjct: 69  HTRGIKKVQILSLRRSLSYVIQGMP------NIESLNLCGCFNLTDNGLGHAFVQDIPSL 122

Query: 158 ESLNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
             LN+  C  ITDS +  ++  L NL+ L++   S +T++G+  +  GL KL  LNL  C
Sbjct: 123 RILNLSLCKPITDSSLGRIAQYLKNLEVLELGGLSNITNTGLLLIAWGLHKLKSLNLRSC 182

Query: 215 PVTA-------ACLDSLSALGSLF--YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
              +       A +   +A G LF   L L  CQ L+D   +  SK + +LKVLNL F  
Sbjct: 183 RHVSDVGIGHLAGMTRSAAEGCLFLEQLTLQDCQKLTDLSLKHVSKGLANLKVLNLSFCG 242

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRH 319
            I+D  ++HL  +T+L SLNL SC  I D G+++L  G   L  L++S   ++G   L +
Sbjct: 243 GISDSGMIHLSNMTHLWSLNLRSCDNISDTGIMHLAMGSLQLSGLDVSFCDKIGDQSLAY 302

Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLT 375
           ++ GL  L+S++L    ISD  + R +  +  LK+LN+    +ITD GL  +   LT LT
Sbjct: 303 IAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLT 362

Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEI 403
            +DL+G  +IT  G   +     L+ L +
Sbjct: 363 GIDLYGCTKITKRGLERITQLPCLKVLNL 391



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 113/360 (31%), Positives = 187/360 (51%), Gaps = 56/360 (15%)

Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKV 192
            KL L R        ++ +G+ K++ L+++       S    + G+ N++SL +  C  +
Sbjct: 53  AKLHLRRANPSLFPSLHTRGIKKVQILSLR------RSLSYVIQGMPNIESLNLCGCFNL 106

Query: 193 TDSGI--AYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
           TD+G+  A+++ +  L +LNL  C P+T + L  ++      YL                
Sbjct: 107 TDNGLGHAFVQDIPSLRILNLSLCKPITDSSLGRIAQ-----YLK--------------- 146

Query: 250 KIGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN----- 301
              +L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + D G+ +L G+       
Sbjct: 147 ---NLEVLELGGLSNITNTGLLLIAWGLHKLKSLNLRSCRHVSDVGIGHLAGMTRSAAEG 203

Query: 302 ---LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL 355
              L+ L L D Q +    L+H+S GL NL+ +NLSF G ISD  +  L+ ++ L SLNL
Sbjct: 204 CLFLEQLTLQDCQKLTDLSLKHVSKGLANLKVLNLSFCGGISDSGMIHLSNMTHLWSLNL 263

Query: 356 DA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTD 410
            +   I+DTG+   A+ SL  L+ LD+ F  +I D   AY+ +    L+SL +C   ++D
Sbjct: 264 RSCDNISDTGIMHLAMGSLQ-LSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISD 322

Query: 411 AGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLNH 467
            G+ + ++ +  L  LN+ Q   +TDK LELI+  LT L  +++   ++IT  GL  +  
Sbjct: 323 DGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQ 382



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 163/315 (51%), Gaps = 40/315 (12%)

Query: 81  SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLD 137
            N++SL+   C  ++D GL H  ++ + +L  L+      IT   +   A  L NL  L+
Sbjct: 93  PNIESLNLCGCFNLTDNGLGHAFVQDIPSLRILNLSLCKPITDSSLGRIAQYLKNLEVLE 152

Query: 138 LERCTRIHGGLVNLK---------GLMKLESLNIKWCNCITDSDMKPLSGLTN------- 181
           L       GGL N+          GL KL+SLN++ C  ++D  +  L+G+T        
Sbjct: 153 L-------GGLSNITNTGLLLIAWGLHKLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCL 205

Query: 182 -LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNR 237
            L+ L +  C K+TD  + ++ KGL  L +LNL  C  ++ + +  LS +  L+ LNL  
Sbjct: 206 FLEQLTLQDCQKLTDLSLKHVSKGLANLKVLNLSFCGGISDSGMIHLSNMTHLWSLNLRS 265

Query: 238 C-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEG 292
           C  +SD G    + +GSL++  L++ F ++I D+ L ++ +GL  L+SL+L SC I D+G
Sbjct: 266 CDNISDTGIMHLA-MGSLQLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDG 324

Query: 293 LVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLS 348
           +  +   +  LK L +    ++   GL  ++  LT L  I+L   T I+   L ++  L 
Sbjct: 325 INRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLP 384

Query: 349 SLKSLNLDARQITDT 363
            LK LNL   Q+T++
Sbjct: 385 CLKVLNLGLWQMTES 399



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 142/286 (49%), Gaps = 33/286 (11%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
           + D  +  IA    +L  ++L G S++T++GL+ +      L+SL+   C  +SD G+ H
Sbjct: 133 ITDSSLGRIAQYLKNLEVLELGGLSNITNTGLLLIAWGLHKLKSLNLRSCRHVSDVGIGH 192

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
           L G++                   A  G + L +L L+ C ++    L ++ KGL  L+ 
Sbjct: 193 LAGMTR-----------------SAAEGCLFLEQLTLQDCQKLTDLSLKHVSKGLANLKV 235

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
           LN+ +C  I+DS M  LS +T+L SL + SC  ++D+GI +L  G  +L+ L++  C   
Sbjct: 236 LNLSFCGGISDSGMIHLSNMTHLWSLNLRSCDNISDTGIMHLAMGSLQLSGLDVSFCDKI 295

Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVH 271
                SL+ +    Y    L+L  C +SDDG  +  + +  LK LN+G    ITD+ L  
Sbjct: 296 GD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLEL 353

Query: 272 LK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
           +   LT L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 354 IADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTES 399


>gi|46447568|ref|YP_008933.1| hypothetical protein pc1934 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401209|emb|CAF24658.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 261

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 95/241 (39%), Positives = 141/241 (58%), Gaps = 12/241 (4%)

Query: 206 LTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE 263
           L  LNL GC  +T A L  L+ L +L +LNL+RC +L+D G    + + +L+ L L + E
Sbjct: 3   LKYLNLSGCSKLTNAGLAHLTPLKTLQHLNLSRCSRLTDAGLAHLTPLTALQHLGLSYCE 62

Query: 264 -ITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHL 320
            +TD  L HL  LT L+ L L +C  + D GLV+LT L +L+ L+LS+   +   GL HL
Sbjct: 63  NLTDAGLAHLALLTALQDLALANCKHLTDVGLVHLTPLTSLQHLDLSNCMNLTDDGLVHL 122

Query: 321 SGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD--ARQITDTGLAALTSLTGLTHL 377
           + LT L+ + LS    ++D  L  L  L++L++L L    + +T  GLA L  LT L  L
Sbjct: 123 TPLTALQHLVLSGCDNLTDAGLAHLTPLTALQTLGLRRWCQNLTGDGLAHLAPLTALQTL 182

Query: 378 DL-FGARITDSGAAYLRNFKNLRSL--EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
           DL +   + D+G A+L     L++L  + C   LTDAG+ H+K L++L  L+LS   +LT
Sbjct: 183 DLSYCKNLKDAGLAHLTPLTALQTLGLKWCSK-LTDAGLAHLKPLAALQHLDLSHCRSLT 241

Query: 435 D 435
           D
Sbjct: 242 D 242



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/241 (34%), Positives = 128/241 (53%), Gaps = 8/241 (3%)

Query: 62  VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           ++LSG S +T++GL HL     LQ L+ + C +++D GL HL  L+ L  L       +T
Sbjct: 6   LNLSGCSKLTNAGLAHLTPLKTLQHLNLSRCSRLTDAGLAHLTPLTALQHLGLSYCENLT 65

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
             G+   A L  L  L L  C  +   GLV+L  L  L+ L++  C  +TD  +  L+ L
Sbjct: 66  DAGLAHLALLTALQDLALANCKHLTDVGLVHLTPLTSLQHLDLSNCMNLTDDGLVHLTPL 125

Query: 180 TNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNL-EGCP-VTAACLDSLSALGSLFYLNLN 236
           T L+ L +S C  +TD+G+A+L  L  L  L L   C  +T   L  L+ L +L  L+L+
Sbjct: 126 TALQHLVLSGCDNLTDAGLAHLTPLTALQTLGLRRWCQNLTGDGLAHLAPLTALQTLDLS 185

Query: 237 RCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGL 293
            C+ L D G    + + +L+ L L + +++TD  L HLK L  L+ L+L  C  + D GL
Sbjct: 186 YCKNLKDAGLAHLTPLTALQTLGLKWCSKLTDAGLAHLKPLAALQHLDLSHCRSLTDAGL 245

Query: 294 V 294
            
Sbjct: 246 A 246



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/145 (40%), Positives = 82/145 (56%), Gaps = 5/145 (3%)

Query: 326 LESINLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL-FGA 382
           L+ +NLS  + +++  L  L  L +L+ LNL    ++TD GLA LT LT L HL L +  
Sbjct: 3   LKYLNLSGCSKLTNAGLAHLTPLKTLQHLNLSRCSRLTDAGLAHLTPLTALQHLGLSYCE 62

Query: 383 RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
            +TD+G A+L     L+ L +     LTD G+ H+  L+SL  L+LS   NLTD  L  +
Sbjct: 63  NLTDAGLAHLALLTALQDLALANCKHLTDVGLVHLTPLTSLQHLDLSNCMNLTDDGLVHL 122

Query: 442 SGLTGLVSLNVSN-SRITSAGLRHL 465
           + LT L  L +S    +T AGL HL
Sbjct: 123 TPLTALQHLVLSGCDNLTDAGLAHL 147



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 57  SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
           ++L ++DLS   ++ D+GL HL   + LQ+L   +C +++D GL HL+ L+ L  L    
Sbjct: 177 TALQTLDLSYCKNLKDAGLAHLTPLTALQTLGLKWCSKLTDAGLAHLKPLAALQHLDLSH 236

Query: 116 NNAITAQGMKAFAGLINLVKLDLER 140
             ++T  G+  F  L   + L++ R
Sbjct: 237 CRSLTDAGLARFKILATSLNLEIVR 261


>gi|149173736|ref|ZP_01852365.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
 gi|148847266|gb|EDL61600.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
          Length = 496

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 124/254 (48%), Gaps = 4/254 (1%)

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNL 235
            GL  + +  +  +++TD G+ YL  L  L  LNL+   VT A  L  L  L  L  L+L
Sbjct: 116 PGLRPVPAANVRRNQITDRGLGYLTELSSLRSLNLQATRVTDAGLLQYLPELPRLQRLSL 175

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT--NLESLNLDSCGIGDEGL 293
               ++D        +  L+ +NLG   +++E +++L G    +L  LNL +  + D+ L
Sbjct: 176 ACLDITDAALLALESLAWLESINLGHTAVSNEAILNLVGAKAFSLRRLNLSNTAVNDQAL 235

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
                   L  LELSDT +  +  +       L  + L+FT I+D  +R LA    L+ L
Sbjct: 236 AECLPDSQLNKLELSDTGITDAACQSCVECEWLTDLCLNFTDITDDGVRHLANCGHLRKL 295

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
            L   +ITDT L  L   +G+  L L    ITD+G   L +F  L SL++    LTD G+
Sbjct: 296 ELFKTKITDTSLVWLAD-SGIEDLGLGFTAITDAGIPALTDFPALESLDLQKTSLTDKGL 354

Query: 414 KHIKDLSSLTLLNL 427
           + + + ++L  L L
Sbjct: 355 RFLSEATNLKQLQL 368



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 158/342 (46%), Gaps = 48/342 (14%)

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL---------------- 211
           + + D++ L      ++L +  + ++D+G+ ++  ++ L  L L                
Sbjct: 40  VANEDLRHLIFYPGFEALILDNTSISDAGLNFIGEMRNLERLGLYDTLVSDDGLKPLLKL 99

Query: 212 -----------EGC------PVTAAC----------LDSLSALGSLFYLNLNRCQLSDDG 244
                       GC      PV AA           L  L+ L SL  LNL   +++D G
Sbjct: 100 SKLEKLNIACAPGCLSPGLRPVPAANVRRNQITDRGLGYLTELSSLRSLNLQATRVTDAG 159

Query: 245 CEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG--LCN 301
             ++  ++  L+ L+L   +ITD  L+ L+ L  LES+NL    + +E ++NL G    +
Sbjct: 160 LLQYLPELPRLQRLSLACLDITDAALLALESLAWLESINLGHTAVSNEAILNLVGAKAFS 219

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
           L+ L LS+T V    L      + L  + LS TGI+D + +       L  L L+   IT
Sbjct: 220 LRRLNLSNTAVNDQALAECLPDSQLNKLELSDTGITDAACQSCVECEWLTDLCLNFTDIT 279

Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
           D G+  L +   L  L+LF  +ITD+   +L +   +  L +    +TDAG+  + D  +
Sbjct: 280 DDGVRHLANCGHLRKLELFKTKITDTSLVWLAD-SGIEDLGLGFTAITDAGIPALTDFPA 338

Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
           L  L+L Q  +LTDK L  +S  T L  L + N+ I+ AG+ 
Sbjct: 339 LESLDL-QKTSLTDKGLRFLSEATNLKQLQLDNTEISHAGIE 379



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 105/209 (50%), Gaps = 7/209 (3%)

Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
           ++NL  +E+ +E L HL      E+L LD+  I D GL  +  + NL+ L L DT V   
Sbjct: 32  LVNLMNSEVANEDLRHLIFYPGFEALILDNTSISDAGLNFIGEMRNLERLGLYDTLVSDD 91

Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
           GL+ L  L+ LE +N++    + G L    GL  + + N+   QITD GL  LT L+ L 
Sbjct: 92  GLKPLLKLSKLEKLNIA---CAPGCLSP--GLRPVPAANVRRNQITDRGLGYLTELSSLR 146

Query: 376 HLDLFGARITDSG-AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
            L+L   R+TD+G   YL     L+ L +    +TDA +  ++ L+ L  +NL       
Sbjct: 147 SLNLQATRVTDAGLLQYLPELPRLQRLSLACLDITDAALLALESLAWLESINLGHTAVSN 206

Query: 435 DKTLELISGLT-GLVSLNVSNSRITSAGL 462
           +  L L+      L  LN+SN+ +    L
Sbjct: 207 EAILNLVGAKAFSLRRLNLSNTAVNDQAL 235



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 154/357 (43%), Gaps = 48/357 (13%)

Query: 57  SSLLSVDLSGSDVTDSGLI-HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
           SSL S++L  + VTD+GL+ +L +   LQ L    C+ I+D  L  L  L+ L S+    
Sbjct: 143 SSLRSLNLQATRVTDAGLLQYLPELPRLQRLSLA-CLDITDAALLALESLAWLESI---- 197

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
           N   TA   +A   L+      L R   +    VN + L +          C+ DS    
Sbjct: 198 NLGHTAVSNEAILNLVGAKAFSLRRLN-LSNTAVNDQALAE----------CLPDS---- 242

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
                 L  L++S + +TD+        + LT L L    +T   +  L+  G L  L L
Sbjct: 243 -----QLNKLELSDTGITDAACQSCVECEWLTDLCLNFTDITDDGVRHLANCGHLRKLEL 297

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
            + +++D      +  G ++ L LGF  ITD  +  L     LESL+L    + D+GL  
Sbjct: 298 FKTKITDTSLVWLADSG-IEDLGLGFTAITDAGIPALTDFPALESLDLQKTSLTDKGLRF 356

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           L+   NLK L+L +T++  +G+  L  L           GI +  L  L   +SL++L +
Sbjct: 357 LSEATNLKQLQLDNTEISHAGIEFLLSLP--LESLSLNPGIDNAGLNTLVRHNSLRNLAI 414

Query: 356 DARQITD-------------------TGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
               +T+                   T L+ L  L  L +L L+G R + +  A LR
Sbjct: 415 WNCNVTNWQPLMKLELLEVLLIDDSVTDLSPLRELDQLKYLLLWGDRFSPTELARLR 471



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 16/189 (8%)

Query: 15  VYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGL 74
           ++   +T+ SL    D  ++DL LG +  + D  +  + +   +L S+DL  + +TD GL
Sbjct: 297 LFKTKITDTSLVWLADSGIEDLGLG-FTAITDAGIPAL-TDFPALESLDLQKTSLTDKGL 354

Query: 75  IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
             L + +NL+ L  +   +IS  G+E L  L   +      N  I   G+       +L 
Sbjct: 355 RFLSEATNLKQLQLDN-TEISHAGIEFLLSLPLESLSL---NPGIDNAGLNTLVRHNSLR 410

Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKV 192
            L +  C      + N + LMKLE L +     I DS  D+ PL  L  LK L +   + 
Sbjct: 411 NLAIWNC-----NVTNWQPLMKLELLEVL---LIDDSVTDLSPLRELDQLKYLLLWGDRF 462

Query: 193 TDSGIAYLK 201
           + + +A L+
Sbjct: 463 SPTELARLR 471


>gi|290977411|ref|XP_002671431.1| leucine rich repeat protein [Naegleria gruberi]
 gi|284085000|gb|EFC38687.1| leucine rich repeat protein [Naegleria gruberi]
          Length = 389

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 146/324 (45%), Gaps = 29/324 (8%)

Query: 130 LINLVKLDLERC----TRIHGGLVNLKGLMKLESLNIKWC-------------------- 165
           L N+ K+ L  C      I G +  LK   +L S++I +C                    
Sbjct: 68  LHNISKIKLRACDDYLESIKGLMEILKSYDQLRSVDIGYCYIGNSQTISEMKQLTSLDID 127

Query: 166 -NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE--GCPVTAACLD 222
            NC+ +  +K +  L NL  L I C+++   G   + G++++  LN+   G  V  A L 
Sbjct: 128 NNCVDEQGVKLIGELHNLTRLNIGCNRIGLEGFKSISGMKQMRDLNVSSSGAGVEGAKL- 186

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
            +S L  L   N++  ++ ++G +   ++  L +L++  N+I  E    +  L  L  L 
Sbjct: 187 -MSQLKHLTKFNISGNEIGEEGAKSIGELKWLTMLDICSNQIGAEGAKSISQLERLTKLY 245

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
           +   GIG EG  +++ L +L  L +   Q+GS G + +S L  L  + +    I      
Sbjct: 246 ISGNGIGPEGAQSISQLSHLTTLFIGGNQIGSKGSKSISQLKRLTILYIDSNEIGSEGAN 305

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
            ++ LS+LK L +   QI D G  +++ L  LT L++    I D GA  +   K L  L 
Sbjct: 306 SISQLSNLKELYISDNQIGDEGAKSISQLKHLTTLEILRNEIGDQGAKSISQLKQLTRLH 365

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLN 426
           I    + D G K +  +   +L+N
Sbjct: 366 ISCNRIGDQGAKLLNRMKINSLIN 389



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 143/296 (48%), Gaps = 7/296 (2%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
           LK    L+S+D  +C     G  + +  +  LTSL    NN +  QG+K    L NL +L
Sbjct: 93  LKSYDQLRSVDIGYCY---IGNSQTISEMKQLTSLDID-NNCVDEQGVKLIGELHNLTRL 148

Query: 137 DLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
           ++  C RI   G  ++ G+ ++  LN+       +   K +S L +L    IS +++ + 
Sbjct: 149 NI-GCNRIGLEGFKSISGMKQMRDLNVSSSGAGVEG-AKLMSQLKHLTKFNISGNEIGEE 206

Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
           G   +  L+ LT+L++    + A    S+S L  L  L ++   +  +G +  S++  L 
Sbjct: 207 GAKSIGELKWLTMLDICSNQIGAEGAKSISQLERLTKLYISGNGIGPEGAQSISQLSHLT 266

Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
            L +G N+I  +    +  L  L  L +DS  IG EG  +++ L NLK L +SD Q+G  
Sbjct: 267 TLFIGGNQIGSKGSKSISQLKRLTILYIDSNEIGSEGANSISQLSNLKELYISDNQIGDE 326

Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
           G + +S L +L ++ +    I D   + ++ L  L  L++   +I D G   L  +
Sbjct: 327 GAKSISQLKHLTTLEILRNEIGDQGAKSISQLKQLTRLHISCNRIGDQGAKLLNRM 382


>gi|18568223|gb|AAL75966.1|AF467462_1 PpaB [Danio rerio]
          Length = 392

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 108/323 (33%), Positives = 168/323 (52%), Gaps = 32/323 (9%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
           RG+  + +LS RR+ +   QGM       N+  L+L  C  +     G   ++ +  L  
Sbjct: 66  RGIRRVQTLSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 119

Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPV 216
           LN+  C  ITDS +  ++  L NL+ L++  CS +T++G+  +  GL +L  LNL  C  
Sbjct: 120 LNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRH 179

Query: 217 TA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
            +       A +   +A G  SL YL L  CQ L+D   +  SK +  LKVLNL F   I
Sbjct: 180 VSDVGIGHLAGMTRSAAEGCLSLEYLTLQDCQKLTDLSLKHISKGLTKLKVLNLSFCGGI 239

Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS 321
           +D  ++HL  +T+L SLNL SC  I D G+++L  G   L  L++S   ++G   L  ++
Sbjct: 240 SDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLACIA 299

Query: 322 -GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHL 377
            GL  L+S++L    ISD  + R +  +  L++LN+    +ITD GL  +   LT LT +
Sbjct: 300 QGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLTGI 359

Query: 378 DLFG-ARITDSGAAYLRNFKNLR 399
           DL+G  +IT  G   +     L+
Sbjct: 360 DLYGCTKITKRGLERITQLPCLK 382



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 109/359 (30%), Positives = 186/359 (51%), Gaps = 54/359 (15%)

Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKV 192
            KL L R        +  +G+ ++++L+++       S    + G+ N++SL +S C  +
Sbjct: 48  AKLHLRRANPSLFPSLQARGIRRVQTLSLR------RSLSYVIQGMPNIESLNLSGCYNL 101

Query: 193 TDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
           TD+G+  A+++ +  L +LNL  C                        Q++D    + ++
Sbjct: 102 TDNGLGHAFVQEIPSLRVLNLSLCK-----------------------QITDSSLGRIAQ 138

Query: 251 -IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLC------ 300
            + +L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + D G+ +L G+       
Sbjct: 139 YLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEG 198

Query: 301 --NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL 355
             +L+ L L D Q +    L+H+S GLT L+ +NLSF G ISD  +  L+ ++SL SLNL
Sbjct: 199 CLSLEYLTLQDCQKLTDLSLKHISKGLTKLKVLNLSFCGGISDAGMIHLSHMTSLWSLNL 258

Query: 356 DA-RQITDTGLAALTSLT-GLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 411
            +   I+DTG+  L   T  L+ LD+ F  +I D   A + +    L+SL +C   ++D 
Sbjct: 259 RSCDNISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLACIAQGLYQLKSLSLCSCHISDD 318

Query: 412 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLNH 467
           G+ + ++ +  L  LN+ Q   +TDK LELI+  LT L  +++   ++IT  GL  +  
Sbjct: 319 GINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQ 377



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 141/283 (49%), Gaps = 33/283 (11%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
           + D  +  IA    +L  ++L G S++T++GL+ +      L+SL+   C  +SD G+ H
Sbjct: 128 ITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGH 187

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
           L G++                   A  G ++L  L L+ C ++    L ++ KGL KL+ 
Sbjct: 188 LAGMTR-----------------SAAEGCLSLEYLTLQDCQKLTDLSLKHISKGLTKLKV 230

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
           LN+ +C  I+D+ M  LS +T+L SL + SC  ++D+GI +L  G  +L+ L++  C   
Sbjct: 231 LNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKI 290

Query: 218 A----ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVH 271
                AC+     L  L  L+L  C +SDDG  +  + +  L+ LN+G    ITD+ L  
Sbjct: 291 GDQSLACIA--QGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLEL 348

Query: 272 LK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQV 312
           +   LT L  ++L  C  I   GL  +T L  LK   L   Q+
Sbjct: 349 IADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVFNLGLWQM 391



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 101/203 (49%), Gaps = 29/203 (14%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           +TD  L H+ K  + L+ L+ +FC  ISD G+ HL  +++L SL+ R  + I+  G+   
Sbjct: 213 LTDLSLKHISKGLTKLKVLNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHL 272

Query: 128 A-GLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           A G + L  LD+  C +I         +GL +L+SL++  C+   D   + +  +  L++
Sbjct: 273 AMGTLRLSGLDVSFCDKIGDQSLACIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRT 332

Query: 185 LQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           L I  C ++TD G+  +   L +LT ++L GC                        +++ 
Sbjct: 333 LNIGQCVRITDKGLELIADHLTQLTGIDLYGCT-----------------------KITK 369

Query: 243 DGCEKFSKIGSLKVLNLGFNEIT 265
            G E+ +++  LKV NLG  ++T
Sbjct: 370 RGLERITQLPCLKVFNLGLWQMT 392


>gi|46447550|ref|YP_008915.1| hypothetical protein pc1916 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401191|emb|CAF24640.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 310

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 87/249 (34%), Positives = 121/249 (48%), Gaps = 33/249 (13%)

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
           L+ + +T++ L+ LKDC NL++L    C  ++D GLEHL  L+ L  L            
Sbjct: 84  LNQAYLTNAHLLALKDCKNLKALYLEACQALTDDGLEHLTLLTALQHLD----------- 132

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
               +G  NL             GLV+L  L+ L+ L +  C  +TD  +  L+ LT L+
Sbjct: 133 ---LSGCWNLTD----------AGLVHLTPLVGLQHLKLNACYNLTDDGLVHLTPLTALQ 179

Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-L 240
            L +S C  +TD+G+A+LK L  L  L L  C  +T A L  L+ L  L YL L+ C  L
Sbjct: 180 HLDLSDCMNLTDAGLAHLKPLTALQHLGLSCCENLTDAGLAHLAPLTGLQYLALSDCMNL 239

Query: 241 SDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
           +DDG      + +L+ LNL     +TD  L HL  L  L+ LNL  C       V  TGL
Sbjct: 240 TDDGLVHLKPLTALQHLNLRNCRNVTDAGLAHLTPLKALQQLNLRRCDK-----VTNTGL 294

Query: 300 CNLKCLELS 308
              K L  S
Sbjct: 295 ARFKTLAAS 303



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 92/262 (35%), Positives = 134/262 (51%), Gaps = 31/262 (11%)

Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVL 257
           + K ++ L  LN     +T A L +L    +L  L L  CQ L+DDG E  + + +L+ L
Sbjct: 74  FSKKIEGLNFLN--QAYLTNAHLLALKDCKNLKALYLEACQALTDDGLEHLTLLTALQHL 131

Query: 258 NL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGS 314
           +L G   +TD  LVHL  L  L+ L L++C  + D+GLV+LT L  L+ L+LSD   +  
Sbjct: 132 DLSGCWNLTDAGLVHLTPLVGLQHLKLNACYNLTDDGLVHLTPLTALQHLDLSDCMNLTD 191

Query: 315 SGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLT 372
           +GL HL  LT L+ + LS    ++D  L  LA L+ L+ L L D   +TD GL  L  LT
Sbjct: 192 AGLAHLKPLTALQHLGLSCCENLTDAGLAHLAPLTGLQYLALSDCMNLTDDGLVHLKPLT 251

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
            L HL+L             RN +N+          TDAG+ H+  L +L  LNL +   
Sbjct: 252 ALQHLNL-------------RNCRNV----------TDAGLAHLTPLKALQQLNLRRCDK 288

Query: 433 LTDKTLELISGLTGLVSLNVSN 454
           +T+  L     L   ++L + N
Sbjct: 289 VTNTGLARFKTLAASLNLRIIN 310



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/195 (40%), Positives = 106/195 (54%), Gaps = 7/195 (3%)

Query: 278 LESLN-LDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FT 334
           +E LN L+   + +  L+ L    NLK L L   Q +   GL HL+ LT L+ ++LS   
Sbjct: 78  IEGLNFLNQAYLTNAHLLALKDCKNLKALYLEACQALTDDGLEHLTLLTALQHLDLSGCW 137

Query: 335 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 392
            ++D  L  L  L  L+ L L+A   +TD GL  LT LT L HLDL     +TD+G A+L
Sbjct: 138 NLTDAGLVHLTPLVGLQHLKLNACYNLTDDGLVHLTPLTALQHLDLSDCMNLTDAGLAHL 197

Query: 393 RNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
           +    L+ L + C   LTDAG+ H+  L+ L  L LS   NLTD  L  +  LT L  LN
Sbjct: 198 KPLTALQHLGLSCCENLTDAGLAHLAPLTGLQYLALSDCMNLTDDGLVHLKPLTALQHLN 257

Query: 452 VSNSR-ITSAGLRHL 465
           + N R +T AGL HL
Sbjct: 258 LRNCRNVTDAGLAHL 272



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 122/221 (55%), Gaps = 9/221 (4%)

Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL 307
            KI  L  LN  +  +T+  L+ LK   NL++L L++C  + D+GL +LT L  L+ L+L
Sbjct: 76  KKIEGLNFLNQAY--LTNAHLLALKDCKNLKALYLEACQALTDDGLEHLTLLTALQHLDL 133

Query: 308 SD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL-DARQITDTG 364
           S    +  +GL HL+ L  L+ + L +   ++D  L  L  L++L+ L+L D   +TD G
Sbjct: 134 SGCWNLTDAGLVHLTPLVGLQHLKLNACYNLTDDGLVHLTPLTALQHLDLSDCMNLTDAG 193

Query: 365 LAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSL 422
           LA L  LT L HL L     +TD+G A+L     L+ L +     LTD G+ H+K L++L
Sbjct: 194 LAHLKPLTALQHLGLSCCENLTDAGLAHLAPLTGLQYLALSDCMNLTDDGLVHLKPLTAL 253

Query: 423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGL 462
             LNL    N+TD  L  ++ L  L  LN+    ++T+ GL
Sbjct: 254 QHLNLRNCRNVTDAGLAHLTPLKALQQLNLRRCDKVTNTGL 294



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 3/101 (2%)

Query: 67  SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
            ++TD+GL HL   + LQ L  + C+ ++D GL HL+ L+ L  L+ R    +T  G+  
Sbjct: 212 ENLTDAGLAHLAPLTGLQYLALSDCMNLTDDGLVHLKPLTALQHLNLRNCRNVTDAGLAH 271

Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN 166
              L  L +L+L RC ++ + GL   K L    SLN++  N
Sbjct: 272 LTPLKALQQLNLRRCDKVTNTGLARFKTLAA--SLNLRIIN 310


>gi|290972682|ref|XP_002669080.1| predicted protein [Naegleria gruberi]
 gi|284082622|gb|EFC36336.1| predicted protein [Naegleria gruberi]
          Length = 434

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 149/317 (47%), Gaps = 23/317 (7%)

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           S++   S L  L  L ++ +++ D  +  +  L+ LTLL L G  ++   +  +S L  L
Sbjct: 36  SEIDKFSRLDQLTELNVNWNRLKDEDVKSIGNLKNLTLLELSGNEISKNSMKFISQLSEL 95

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
             L++    + ++G      +  L  LN+    IT E +  +  L+NL  L++    IG 
Sbjct: 96  TKLSVGLNSIENEGINSIINLSKLTCLNIINANITSEGVKLIGKLSNLTILDISGNLIGA 155

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
           EG   +  L NLK L  SD ++G  G + +  +  L S+ L    I +   + ++ L+ L
Sbjct: 156 EGGQYIGELNNLKILVASDNELGVFGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLTQL 215

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFG----------------------ARITDSG 388
             L+L   +I + G   LT L  LT+LD+                         +I D+G
Sbjct: 216 TDLDLGRNEIGNEGFKLLTKLEKLTNLDMVSNNISDLSSIGQLGLLNCLDVRKNKIEDTG 275

Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
              +     L +L +CG  +T  G K + ++  LT L++S+  ++ D+  + I+ LT L 
Sbjct: 276 IRNICQLGGLNALRLCGNPITSEGAKILSEMVQLTNLSISE-THIDDEGAKFIAQLTTLK 334

Query: 449 SLNVSNSRITSAGLRHL 465
            L++S  RIT+ G++ +
Sbjct: 335 YLDISTKRITANGVKFI 351



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 172/369 (46%), Gaps = 29/369 (7%)

Query: 83  LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
           L  L+ N+  ++ D  ++ +  L NLT L     N I+   MK  + L  L KL +   +
Sbjct: 47  LTELNVNWN-RLKDEDVKSIGNLKNLTLLELS-GNEISKNSMKFISQLSELTKLSVGLNS 104

Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
             + G+ ++  L KL  LNI   N IT   +K +  L+NL  L IS + +   G  Y+  
Sbjct: 105 IENEGINSIINLSKLTCLNIINAN-ITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGE 163

Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
           L  L +L      +      S+  +  L  L L    + ++G +  S++  L  L+LG N
Sbjct: 164 LNNLKILVASDNELGVFGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLTQLTDLDLGRN 223

Query: 263 EITDE---CLVHLKGLTNLESL-----NLDSCG--------------IGDEGLVNLTGLC 300
           EI +E    L  L+ LTNL+ +     +L S G              I D G+ N+  L 
Sbjct: 224 EIGNEGFKLLTKLEKLTNLDMVSNNISDLSSIGQLGLLNCLDVRKNKIEDTGIRNICQLG 283

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            L  L L    + S G + LS +  L ++++S T I D   + +A L++LK L++  ++I
Sbjct: 284 GLNALRLCGNPITSEGAKILSEMVQLTNLSISETHIDDEGAKFIAQLTTLKYLDISTKRI 343

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE--ICGGGLTDAGVKHIKD 418
           T  G+  +  L+ L  LD+    I D G  Y+   + L +L    C  GL   G K + +
Sbjct: 344 TANGVKFICQLSKLISLDINWNNIGDEGVLYISRMQQLETLNAVYCNIGL--EGAKLLSE 401

Query: 419 LSSLTLLNL 427
           +  LT+L++
Sbjct: 402 MEQLTVLDV 410



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 167/365 (45%), Gaps = 27/365 (7%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           ++LSG++++ + +  +   S L  L       I + G+  +  LS LT L+    N IT+
Sbjct: 74  LELSGNEISKNSMKFISQLSELTKLSVGLN-SIENEGINSIINLSKLTCLNIINAN-ITS 131

Query: 122 QGMKAFAGLINLVKLDLE------RCTRIHGGLVNLK------------GLMKLESLN-- 161
           +G+K    L NL  LD+          +  G L NLK            G   +  +N  
Sbjct: 132 EGVKLIGKLSNLTILDISGNLIGAEGGQYIGELNNLKILVASDNELGVFGAKSIGEMNQL 191

Query: 162 IKWC---NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
              C   N I +   K +S LT L  L +  +++ + G   L  L+KLT  NL+      
Sbjct: 192 TSLCLIGNSIGNEGAKYISQLTQLTDLDLGRNEIGNEGFKLLTKLEKLT--NLDMVSNNI 249

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
           + L S+  LG L  L++ + ++ D G     ++G L  L L  N IT E    L  +  L
Sbjct: 250 SDLSSIGQLGLLNCLDVRKNKIEDTGIRNICQLGGLNALRLCGNPITSEGAKILSEMVQL 309

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            +L++    I DEG   +  L  LK L++S  ++ ++G++ +  L+ L S+++++  I D
Sbjct: 310 TNLSISETHIDDEGAKFIAQLTTLKYLDISTKRITANGVKFICQLSKLISLDINWNNIGD 369

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             +  ++ +  L++LN     I   G   L+ +  LT LD+   RI   G   L N    
Sbjct: 370 EGVLYISRMQQLETLNAVYCNIGLEGAKLLSEMEQLTVLDVKIKRIPGEGIQLLENIARF 429

Query: 399 RSLEI 403
           +SL +
Sbjct: 430 KSLVV 434



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 110/232 (47%), Gaps = 20/232 (8%)

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLE-------------------SLNLDSCGIGDEGL 293
           +L  LN+ +N+I+++  + L G+ +L+                    LN++   + DE +
Sbjct: 3   NLTYLNIDWNKISEKSKIILSGMKHLKILAASGSEIDKFSRLDQLTELNVNWNRLKDEDV 62

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
            ++  L NL  LELS  ++  + ++ +S L+ L  +++    I +  +  +  LS L  L
Sbjct: 63  KSIGNLKNLTLLELSGNEISKNSMKFISQLSELTKLSVGLNSIENEGINSIINLSKLTCL 122

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
           N+    IT  G+  +  L+ LT LD+ G  I   G  Y+    NL+ L      L   G 
Sbjct: 123 NIINANITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGELNNLKILVASDNELGVFGA 182

Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           K I +++ LT L L  N  + ++  + IS LT L  L++  + I + G + L
Sbjct: 183 KSIGEMNQLTSLCLIGNS-IGNEGAKYISQLTQLTDLDLGRNEIGNEGFKLL 233



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 5/156 (3%)

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           + NL  LN+D   I ++  + L+G+ +LK L  S +++        S L  L  +N+++ 
Sbjct: 1   MKNLTYLNIDWNKISEKSKIILSGMKHLKILAASGSEI-----DKFSRLDQLTELNVNWN 55

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            + D  ++ +  L +L  L L   +I+   +  ++ L+ LT L +    I + G   + N
Sbjct: 56  RLKDEDVKSIGNLKNLTLLELSGNEISKNSMKFISQLSELTKLSVGLNSIENEGINSIIN 115

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
              L  L I    +T  GVK I  LS+LT+L++S N
Sbjct: 116 LSKLTCLNIINANITSEGVKLIGKLSNLTILDISGN 151


>gi|290974952|ref|XP_002670208.1| leucine-rich repeat protein [Naegleria gruberi]
 gi|284083764|gb|EFC37464.1| leucine-rich repeat protein [Naegleria gruberi]
          Length = 252

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 116/227 (51%), Gaps = 1/227 (0%)

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
           Q+  +G +  S++  L  LN+  NEI D+    + G+  L SLN+ S   G+EG  +++ 
Sbjct: 13  QVGVEGAKSISEMKQLTSLNISNNEIGDKGANFISGMKQLTSLNIGSNKFGNEGAKSISE 72

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
           +  L  L +   Q+G  G++ +S +  L S+++ + GI       ++ +  L SL++   
Sbjct: 73  MKQLTVLYIGLNQIGDEGVKFISEMKRLTSVDICYNGIGVKGANSISEMKQLTSLDICLN 132

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
           QI D G  +++ L  LT L +   +I D GA  +   K L SL I    +   G + I +
Sbjct: 133 QIGDEGAKSISELEQLTLLYISANQIGDEGAKSISELKQLTSLAISANQIGVKGAESISE 192

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           L  LT L  S N  +  + ++ IS +  L SL++ N+RI + G+  L
Sbjct: 193 LKQLTSLAASAN-QIGAEGVKFISEMKQLTSLDIGNNRIGAEGVTLL 238



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 24/262 (9%)

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
           +CN +     K +S +  L SL IS +++ D G  ++ G+++LT                
Sbjct: 10  YCNQVGVEGAKSISEMKQLTSLNISNNEIGDKGANFISGMKQLT---------------- 53

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
                    LN+   +  ++G +  S++  L VL +G N+I DE +  +  +  L S+++
Sbjct: 54  --------SLNIGSNKFGNEGAKSISEMKQLTVLYIGLNQIGDEGVKFISEMKRLTSVDI 105

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
              GIG +G  +++ +  L  L++   Q+G  G + +S L  L  + +S   I D   + 
Sbjct: 106 CYNGIGVKGANSISEMKQLTSLDICLNQIGDEGAKSISELEQLTLLYISANQIGDEGAKS 165

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           ++ L  L SL + A QI   G  +++ L  LT L     +I   G  ++   K L SL+I
Sbjct: 166 ISELKQLTSLAISANQIGVKGAESISELKQLTSLAASANQIGAEGVKFISEMKQLTSLDI 225

Query: 404 CGGGLTDAGVKHIKDLSSLTLL 425
               +   GV  +  L+SL  L
Sbjct: 226 GNNRIGAEGVTLLTSLTSLKFL 247



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 100/213 (46%), Gaps = 2/213 (0%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           +I D G   + G+  LTSL+   +N    +G K+ + +  L  L +        G+  + 
Sbjct: 37  EIGDKGANFISGMKQLTSLNIG-SNKFGNEGAKSISEMKQLTVLYIGLNQIGDEGVKFIS 95

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
            + +L S++I + N I       +S +  L SL I  +++ D G   +  L++LTLL + 
Sbjct: 96  EMKRLTSVDICY-NGIGVKGANSISEMKQLTSLDICLNQIGDEGAKSISELEQLTLLYIS 154

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
              +      S+S L  L  L ++  Q+   G E  S++  L  L    N+I  E +  +
Sbjct: 155 ANQIGDEGAKSISELKQLTSLAISANQIGVKGAESISELKQLTSLAASANQIGAEGVKFI 214

Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
             +  L SL++ +  IG EG+  LT L +LK L
Sbjct: 215 SEMKQLTSLDIGNNRIGAEGVTLLTSLTSLKFL 247


>gi|290993851|ref|XP_002679546.1| LRR_RI domain-containing protein [Naegleria gruberi]
 gi|284093163|gb|EFC46802.1| LRR_RI domain-containing protein [Naegleria gruberi]
          Length = 385

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 142/293 (48%), Gaps = 14/293 (4%)

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-----LEGCPVTAACLDSLSALGSLFYL 233
           L  L  L IS +++   G   +  L++LT L      LEG  +       +S L  L  L
Sbjct: 86  LQQLTRLVISWNRIGIEGAKAISQLKQLTELEINQIGLEGTKI-------ISELNQLTSL 138

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           N+   ++   G +  S++  L  L++G N++  E + +++ L  L +L++ +  IG  G 
Sbjct: 139 NIANNKMGKQGAKYISEMKQLTKLDIGTNQLGVEGVQYIRKLDKLTALSVFNNVIGFRGA 198

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
           + L  +  L  L +S   +G  G + +S L NL  +NLSF  IS    + ++ L  L  L
Sbjct: 199 MLLRKMTQLTELNISTNAIGDVGAKFVSDLPNLAILNLSFNSISYVGAQFISKLPKLTEL 258

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAG 412
           N++   + + G+  ++ +  LT+L L   RI + G  ++    K LR L++C   + DAG
Sbjct: 259 NMNQNDLGNEGVKFISGIISLTNLSLQTTRIDEHGVKFISEKLKQLRILKLCENNIGDAG 318

Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
            K +  L  LT L+L  N N+  +  + IS +  L  L +  + I   G + +
Sbjct: 319 AKFLITLEKLTDLSLYSN-NIGYEGAKAISTMKALTHLRIHGNPIGIEGAKEI 370



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 131/304 (43%), Gaps = 7/304 (2%)

Query: 55  QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
           Q   L  + +S + +   G   +     L  L+ N   QI   G + +  L+ LTSL+  
Sbjct: 85  QLQQLTRLVISWNRIGIEGAKAISQLKQLTELEIN---QIGLEGTKIISELNQLTSLNIA 141

Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
            NN +  QG K  + +  L KLD+        G+  ++ L KL +L++ + N I      
Sbjct: 142 -NNKMGKQGAKYISEMKQLTKLDIGTNQLGVEGVQYIRKLDKLTALSV-FNNVIGFRGAM 199

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
            L  +T L  L IS + + D G  ++  L  L +LNL    ++      +S L  L  LN
Sbjct: 200 LLRKMTQLTELNISTNAIGDVGAKFVSDLPNLAILNLSFNSISYVGAQFISKLPKLTELN 259

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGL 293
           +N+  L ++G +  S I SL  L+L    I +  +  + + L  L  L L    IGD G 
Sbjct: 260 MNQNDLGNEGVKFISGIISLTNLSLQTTRIDEHGVKFISEKLKQLRILKLCENNIGDAGA 319

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS-DGSLRKLAGLSSLKS 352
             L  L  L  L L    +G  G + +S +  L  + +    I  +G+      L  LK 
Sbjct: 320 KFLITLEKLTDLSLYSNNIGYEGAKAISTMKALTHLRIHGNPIGIEGAKEIYEQLKELKE 379

Query: 353 LNLD 356
             LD
Sbjct: 380 YCLD 383


>gi|17548893|ref|NP_522233.1| GALA protein [Ralstonia solanacearum GMI1000]
          Length = 981

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 118/377 (31%), Positives = 174/377 (46%), Gaps = 7/377 (1%)

Query: 57  SSLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
            S+  +DLSG   S V+++GL +L     L SLD +    I + G + L   ++LTSL+ 
Sbjct: 577 PSVRHLDLSGCTGSAVSEAGLAYLARLP-LASLDLSDT-GIGNRGAQALAASASLTSLNL 634

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
              N I   G +A      L  LD+      + G   L G   L SL ++    I D  +
Sbjct: 635 S-GNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALAGSRSLTSLELR-DTGIEDGGI 692

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           + L+  T L+SL IS + ++D   A L   + LT L   GC +T      L+ + SL  L
Sbjct: 693 EALAANTVLRSLDISGNDLSDQSAAALAANRTLTSLKANGCGLTNDMAQQLARIRSLRTL 752

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
            +    + D G    ++  SL+ LNL  N IT + L  L     L+SL++   G GD G 
Sbjct: 753 EVGSNSIGDAGVLTIARNASLRSLNLSRNPITPQGLYPLALSRTLKSLDVSRIGCGDRGA 812

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
           + L+G   L  L+L   +V S G R L+    L S++L    I   + R LA    L SL
Sbjct: 813 LLLSGNRALTSLKLGFNRVSSEGARRLAANRTLVSLDLRGNTIDVAAARALANAEPLASL 872

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
           N+   ++ D    AL     LT LD+   R++   A  L N   L SL I    +   G 
Sbjct: 873 NVSDCRLDDAVACALAESRTLTSLDVSWNRLSHRAARALANNPVLASLYISHNDIGPEGA 932

Query: 414 KHIKDLSSLTLLNLSQN 430
           + + D +SLT L+   N
Sbjct: 933 QALADSASLTFLDARAN 949



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 124/300 (41%), Gaps = 66/300 (22%)

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
           D + LSGL +   L+            +LKG    TL +L+  P T            L 
Sbjct: 40  DRRALSGLRDHPHLES----------VHLKG--DFTLADLKALPTT------------LR 75

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
           +L+L+ C             GS K             + +L GL  LESLN+    IGD 
Sbjct: 76  HLDLSEC------------TGSAKSF---------RAIAYLAGLP-LESLNVAGAEIGDG 113

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
           G   L    +LK L  +   + +SG R L+    LES++L+   I D   + LAG  SL+
Sbjct: 114 GARLLAANPSLKSLNAASGGISASGARMLAESPTLESLDLTQNAIGDAGAQALAGSRSLR 173

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDL------------------FGARITDSGAAYLR 393
            L +    +TD G  AL     L  LDL                      IT  GA  L 
Sbjct: 174 HLAVRNGLVTDLGTRALALNPALVSLDLGNLVTETGNQVEQDGYDKTANNITAQGAWALA 233

Query: 394 NFKNLRSLEICGGGL-TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
             ++L+SL + G  L  D GV+ +    +LT LN++   N+T  + + ++    L SL+V
Sbjct: 234 QNRSLKSLSVQGNDLCGDDGVRALARNRTLTSLNVAF-TNMTSASAKALADNPVLTSLSV 292



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 95/199 (47%), Gaps = 6/199 (3%)

Query: 268 CLVHLKGLT-NLESLNLDSC---GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
            L  L+ L  ++  L+L  C    + + GL  L  L  L  L+LSDT +G+ G + L+  
Sbjct: 568 SLADLRALPPSVRHLDLSGCTGSAVSEAGLAYLARLP-LASLDLSDTGIGNRGAQALAAS 626

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
            +L S+NLS  GI       L   + L +L++ A  I + G  AL     LT L+L    
Sbjct: 627 ASLTSLNLSGNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALAGSRSLTSLELRDTG 686

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
           I D G   L     LRSL+I G  L+D     +    +LT L  +  C LT+   + ++ 
Sbjct: 687 IEDGGIEALAANTVLRSLDISGNDLSDQSAAALAANRTLTSLK-ANGCGLTNDMAQQLAR 745

Query: 444 LTGLVSLNVSNSRITSAGL 462
           +  L +L V ++ I  AG+
Sbjct: 746 IRSLRTLEVGSNSIGDAGV 764


>gi|290973418|ref|XP_002669445.1| predicted protein [Naegleria gruberi]
 gi|284082993|gb|EFC36701.1| predicted protein [Naegleria gruberi]
          Length = 280

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 137/280 (48%), Gaps = 3/280 (1%)

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           +  L  L I  +++   G   +  +++LTLLN+    +       +S +  L +L++   
Sbjct: 1   MKQLTLLDIGYNQIGVEGAKLISEMKQLTLLNIGTNEIGDEGAIMISEMKQLTFLDIGGN 60

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
           Q+SD+G    SK+  L  L++  N I D+    +  +  L  LN+    IGDEG   ++ 
Sbjct: 61  QISDEGARSISKMRQLTFLDIYGNGIGDKGAKSISEMQQLTLLNIGGNQIGDEGAKLISQ 120

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
           +  L  L++   ++   G + +S +  L S+N+    I    ++ L+ +  L SLN+   
Sbjct: 121 MKQLTFLDIYCNEIDVEGAKCISEMQQLTSLNIGSNEIGVEGVKFLSEMQQLTSLNIGEN 180

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
            I D G   ++ +  LT LD++   I   GA  +   + L SL I   G+ D G K I +
Sbjct: 181 LIGDEGAKLISQMKQLTFLDIYCNEIGVEGAKSISEMQQLTSLNIGENGIGDEGAKLISE 240

Query: 419 LSSLTLLNLSQNCN-LTDKTLELISGLTGLVSLNVSNSRI 457
           +  LT L++   CN +  +  + IS +  L SLN+SN++I
Sbjct: 241 MKQLTFLDIY--CNEIGVEGAKYISEMKQLTSLNISNNQI 278



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 117/244 (47%), Gaps = 1/244 (0%)

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
           LNI   N I D     +S +  L  L I  ++++D G   +  +++LT L++ G  +   
Sbjct: 31  LNI-GTNEIGDEGAIMISEMKQLTFLDIGGNQISDEGARSISKMRQLTFLDIYGNGIGDK 89

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
              S+S +  L  LN+   Q+ D+G +  S++  L  L++  NEI  E    +  +  L 
Sbjct: 90  GAKSISEMQQLTLLNIGGNQIGDEGAKLISQMKQLTFLDIYCNEIDVEGAKCISEMQQLT 149

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
           SLN+ S  IG EG+  L+ +  L  L + +  +G  G + +S +  L  +++    I   
Sbjct: 150 SLNIGSNEIGVEGVKFLSEMQQLTSLNIGENLIGDEGAKLISQMKQLTFLDIYCNEIGVE 209

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
             + ++ +  L SLN+    I D G   ++ +  LT LD++   I   GA Y+   K L 
Sbjct: 210 GAKSISEMQQLTSLNIGENGIGDEGAKLISEMKQLTFLDIYCNEIGVEGAKYISEMKQLT 269

Query: 400 SLEI 403
           SL I
Sbjct: 270 SLNI 273



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 108/217 (49%), Gaps = 1/217 (0%)

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
            L +L++G+N+I  E    +  +  L  LN+ +  IGDEG + ++ +  L  L++   Q+
Sbjct: 3   QLTLLDIGYNQIGVEGAKLISEMKQLTLLNIGTNEIGDEGAIMISEMKQLTFLDIGGNQI 62

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
              G R +S +  L  +++   GI D   + ++ +  L  LN+   QI D G   ++ + 
Sbjct: 63  SDEGARSISKMRQLTFLDIYGNGIGDKGAKSISEMQQLTLLNIGGNQIGDEGAKLISQMK 122

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
            LT LD++   I   GA  +   + L SL I    +   GVK + ++  LT LN+ +N  
Sbjct: 123 QLTFLDIYCNEIDVEGAKCISEMQQLTSLNIGSNEIGVEGVKFLSEMQQLTSLNIGENL- 181

Query: 433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           + D+  +LIS +  L  L++  + I   G + ++  +
Sbjct: 182 IGDEGAKLISQMKQLTFLDIYCNEIGVEGAKSISEMQ 218



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 111/240 (46%), Gaps = 5/240 (2%)

Query: 51  VIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
           ++ S+   L  +D+ G+ ++D G   +     L  LD  +   I D G + +  +  LT 
Sbjct: 44  IMISEMKQLTFLDIGGNQISDEGARSISKMRQLTFLDI-YGNGIGDKGAKSISEMQQLTL 102

Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCIT 169
           L+    N I  +G K  + +  L  LD+  C  I   G   +  + +L SLNI   N I 
Sbjct: 103 LNIG-GNQIGDEGAKLISQMKQLTFLDI-YCNEIDVEGAKCISEMQQLTSLNI-GSNEIG 159

Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
              +K LS +  L SL I  + + D G   +  +++LT L++    +      S+S +  
Sbjct: 160 VEGVKFLSEMQQLTSLNIGENLIGDEGAKLISQMKQLTFLDIYCNEIGVEGAKSISEMQQ 219

Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
           L  LN+    + D+G +  S++  L  L++  NEI  E   ++  +  L SLN+ +  IG
Sbjct: 220 LTSLNIGENGIGDEGAKLISEMKQLTFLDIYCNEIGVEGAKYISEMKQLTSLNISNNQIG 279


>gi|290991310|ref|XP_002678278.1| predicted protein [Naegleria gruberi]
 gi|284091890|gb|EFC45534.1| predicted protein [Naegleria gruberi]
          Length = 346

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 133/271 (49%), Gaps = 4/271 (1%)

Query: 149 VNLKGLMKLESLN-IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
           +N + L ++ ++N +K C+CI   D   +  L NL +L ++C K+ D G+  +  +++LT
Sbjct: 71  INGQFLQRIVAVNGMKKCDCIPFLDQ--VFDLKNLTTLDVNCMKIKDEGVKIISEMKQLT 128

Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
            LN+    ++   +  +S +  L  LN++R  +  +G    S++  L  LN+  N I  E
Sbjct: 129 NLNVGSSGISVEGVKYISGMNQLTNLNISRNNIRAEGARYVSEMKLLTNLNIYLNGIRAE 188

Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
              ++  +  L  LN+ S  I D+G  +L  +  L  L ++   +   G + +S + +L 
Sbjct: 189 GTKYISEMKELTCLNIMSNAIHDKGAEHLRQMPKLNTLNINSNSISVEGAKFISEIQSLT 248

Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
           ++++ F  I D  ++ ++ +  L  L      I + G   ++ +  LT L++    +   
Sbjct: 249 NLDIGFNTIGDDGVKFISKMEKLTKLYTMYINIGEKGAKHISEMEQLTSLNINSNNVGTE 308

Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
           GA YL   K+L  + IC   + D   + IKD
Sbjct: 309 GAKYLCEMKHLTYMNICNNNV-DKQSQFIKD 338



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 127/256 (49%), Gaps = 3/256 (1%)

Query: 203 LQKLTLLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
           LQ++  +N ++ C      LD +  L +L  L++N  ++ D+G +  S++  L  LN+G 
Sbjct: 76  LQRIVAVNGMKKCDCIPF-LDQVFDLKNLTTLDVNCMKIKDEGVKIISEMKQLTNLNVGS 134

Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
           + I+ E + ++ G+  L +LN+    I  EG   ++ +  L  L +    + + G +++S
Sbjct: 135 SGISVEGVKYISGMNQLTNLNISRNNIRAEGARYVSEMKLLTNLNIYLNGIRAEGTKYIS 194

Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
            +  L  +N+    I D     L  +  L +LN+++  I+  G   ++ +  LT+LD+  
Sbjct: 195 EMKELTCLNIMSNAIHDKGAEHLRQMPKLNTLNINSNSISVEGAKFISEIQSLTNLDIGF 254

Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
             I D G  ++   + L  L      + + G KHI ++  LT LN++ N N+  +  + +
Sbjct: 255 NTIGDDGVKFISKMEKLTKLYTMYINIGEKGAKHISEMEQLTSLNINSN-NVGTEGAKYL 313

Query: 442 SGLTGLVSLNVSNSRI 457
             +  L  +N+ N+ +
Sbjct: 314 CEMKHLTYMNICNNNV 329



 Score = 39.7 bits (91), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
           KNL +L++    + D GVK I ++  LT LN+  +  ++ + ++ ISG+  L +LN+S +
Sbjct: 101 KNLTTLDVNCMKIKDEGVKIISEMKQLTNLNVG-SSGISVEGVKYISGMNQLTNLNISRN 159

Query: 456 RITSAGLRHLNHAR 469
            I + G R+++  +
Sbjct: 160 NIRAEGARYVSEMK 173


>gi|290977818|ref|XP_002671634.1| predicted protein [Naegleria gruberi]
 gi|284085204|gb|EFC38890.1| predicted protein [Naegleria gruberi]
          Length = 359

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 133/278 (47%), Gaps = 1/278 (0%)

Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
           F  +  L K+ L   T    G   L GL  L  +++   N   +  +  LS L+ L  L 
Sbjct: 58  FESMKKLTKVYLSSETIDSKGAKYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQLTKLS 117

Query: 187 I-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
           I S + +T  G+ YL  L KLT L + G   T   +  +S+   L  LN+    +SD   
Sbjct: 118 IGSKNNITYEGVEYLSQLSKLTYLCITGNETTDEQVKLISSFKQLKTLNIYSNLISDKSA 177

Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
           E  S +  L VL +  N+I  +    + G+  L+ L+     +G+ G+ ++  +  L  L
Sbjct: 178 EYISNLDELTVLVINNNQIGSKGAKFISGMKQLKQLSDSYTKLGETGVKHICEMTQLTHL 237

Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
            + +T++G+SG +++  L  L+ +++S+ GI++  +  L+ L  L  LN+    I +  L
Sbjct: 238 YICNTKIGNSGAKNIIKLKQLQLLDISYNGINNEIVELLSQLDQLTFLNISGSAIDNLAL 297

Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
             +  +  LT+LD+    I D G  Y+   K L+ + I
Sbjct: 298 TFINKMNQLTYLDVSYNGINDEGLIYISKMKPLKQVGI 335



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 130/264 (49%), Gaps = 7/264 (2%)

Query: 174 KPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLDSLSALGSLF 231
           K L+GL NL  + + S +   +  + YL  L +LT L++     +T   ++ LS L  L 
Sbjct: 80  KYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQLTKLSIGSKNNITYEGVEYLSQLSKLT 139

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
           YL +   + +D+  +  S    LK LN+  N I+D+   ++  L  L  L +++  IG +
Sbjct: 140 YLCITGNETTDEQVKLISSFKQLKTLNIYSNLISDKSAEYISNLDELTVLVINNNQIGSK 199

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
           G   ++G+  LK L  S T++G +G++H+  +T L  + +  T I +   + +  L  L+
Sbjct: 200 GAKFISGMKQLKQLSDSYTKLGETGVKHICEMTQLTHLYICNTKIGNSGAKNIIKLKQLQ 259

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
            L++    I +  +  L+ L  LT L++ G+ I +    ++     L  L++   G+ D 
Sbjct: 260 LLDISYNGINNEIVELLSQLDQLTFLNISGSAIDNLALTFINKMNQLTYLDVSYNGINDE 319

Query: 412 GVKHIKDLSSLT-----LLNLSQN 430
           G+ +I  +  L       L LS+N
Sbjct: 320 GLIYISKMKPLKQVGIGFLQLSRN 343



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 115/248 (46%), Gaps = 27/248 (10%)

Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK 303
           CE F  +  L  + L    I  +   +L GL NL  +++DS    G+E L  L+ L  L 
Sbjct: 55  CEIFESMKKLTKVYLSSETIDSKGAKYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQLT 114

Query: 304 CLEL-SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
            L + S   +   G+ +LS L+ L  + ++    +D  ++ ++    LK+LN+ +  I+D
Sbjct: 115 KLSIGSKNNITYEGVEYLSQLSKLTYLCITGNETTDEQVKLISSFKQLKTLNIYSNLISD 174

Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
                +++L  LT L +   +I   GA ++   K L+ L      L + GVKHI +++ L
Sbjct: 175 KSAEYISNLDELTVLVINNNQIGSKGAKFISGMKQLKQLSDSYTKLGETGVKHICEMTQL 234

Query: 423 T------------------------LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
           T                        LL++S N  + ++ +EL+S L  L  LN+S S I 
Sbjct: 235 THLYICNTKIGNSGAKNIIKLKQLQLLDISYN-GINNEIVELLSQLDQLTFLNISGSAID 293

Query: 459 SAGLRHLN 466
           +  L  +N
Sbjct: 294 NLALTFIN 301



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 123/285 (43%), Gaps = 30/285 (10%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  V LS   +   G  +L   +NL  +  +      +  L +L  LS LT LS    N 
Sbjct: 64  LTKVYLSSETIDSKGAKYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQLTKLSIGSKNN 123

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT +G++  + L  L  L +         +  +    +L++LNI + N I+D   + +S 
Sbjct: 124 ITYEGVEYLSQLSKLTYLCITGNETTDEQVKLISSFKQLKTLNI-YSNLISDKSAEYISN 182

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           L  L  L I+ +++   G  ++ G+++L  L+     +    +  +  +  L +L +   
Sbjct: 183 LDELTVLVINNNQIGSKGAKFISGMKQLKQLSDSYTKLGETGVKHICEMTQLTHLYICNT 242

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDE------------------------CLVHLKG 274
           ++ + G +   K+  L++L++ +N I +E                         L  +  
Sbjct: 243 KIGNSGAKNIIKLKQLQLLDISYNGINNEIVELLSQLDQLTFLNISGSAIDNLALTFINK 302

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLK-----CLELSDTQVGS 314
           +  L  L++   GI DEGL+ ++ +  LK      L+LS  Q+GS
Sbjct: 303 MNQLTYLDVSYNGINDEGLIYISKMKPLKQVGIGFLQLSRNQMGS 347


>gi|430741732|ref|YP_007200861.1| hypothetical protein Sinac_0756 [Singulisphaera acidiphila DSM
           18658]
 gi|430013452|gb|AGA25166.1| hypothetical protein Sinac_0756 [Singulisphaera acidiphila DSM
           18658]
          Length = 304

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 108/219 (49%), Gaps = 4/219 (1%)

Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
           GS+    L    I+DE    L     L+ L +    + D GL  L GL  L+ +     +
Sbjct: 77  GSINPATLPQVPISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPK 136

Query: 312 VGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
           V ++GL HL G T+L S+ L     I+D  L  LAGL++L+ LNL   +I   GL  L  
Sbjct: 137 VTNAGLAHLKGATHLVSLELLRVPEITDEGLVHLAGLTNLEKLNLSGARIAGPGLPHLAR 196

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           L  L  L L     TD+G A L  F NL+ L +  G  TDAG+  +  L SLT L L + 
Sbjct: 197 LGRLRTLVL--GSTTDAGLAQLGRFTNLKQLYLGTGKYTDAGLAELSKLRSLTELGL-EA 253

Query: 431 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
            +LT+  L  ++GL  L  L++  + ++ A +     AR
Sbjct: 254 GDLTEAVLIHVAGLPNLERLDLGGAPVSQAAIEKFKRAR 292



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/183 (36%), Positives = 99/183 (54%), Gaps = 6/183 (3%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           +TD+GL  L     L+ + + F  ++++ GL HL+G ++L SL   R   IT +G+   A
Sbjct: 113 MTDTGLAQLGGLPRLRQV-YCFKPKVTNAGLAHLKGATHLVSLELLRVPEITDEGLVHLA 171

Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
           GL NL KL+L    RI G GL +L  L +L +L +      TD+ +  L   TNLK L +
Sbjct: 172 GLTNLEKLNLS-GARIAGPGLPHLARLGRLRTLVL---GSTTDAGLAQLGRFTNLKQLYL 227

Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
              K TD+G+A L  L+ LT L LE   +T A L  ++ L +L  L+L    +S    EK
Sbjct: 228 GTGKYTDAGLAELSKLRSLTELGLEAGDLTEAVLIHVAGLPNLERLDLGGAPVSQAAIEK 287

Query: 248 FSK 250
           F +
Sbjct: 288 FKR 290



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 104/209 (49%), Gaps = 3/209 (1%)

Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
            L   P++     +L     L  L +    ++D G  +   +  L+ +     ++T+  L
Sbjct: 83  TLPQVPISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPKVTNAGL 142

Query: 270 VHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
            HLKG T+L SL L     I DEGLV+L GL NL+ L LS  ++   GL HL+ L  L +
Sbjct: 143 AHLKGATHLVSLELLRVPEITDEGLVHLAGLTNLEKLNLSGARIAGPGLPHLARLGRLRT 202

Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
           + L  T  +D  L +L   ++LK L L   + TD GLA L+ L  LT L L    +T++ 
Sbjct: 203 LVLGST--TDAGLAQLGRFTNLKQLYLGTGKYTDAGLAELSKLRSLTELGLEAGDLTEAV 260

Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
             ++    NL  L++ G  ++ A ++  K
Sbjct: 261 LIHVAGLPNLERLDLGGAPVSQAAIEKFK 289



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 101/233 (43%), Gaps = 28/233 (12%)

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           I+D     L     L+ L +    +TD+G+A L GL +L  +      VT A L  L   
Sbjct: 89  ISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPKVTNAGLAHLKGA 148

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
             L  L L R                         EITDE LVHL GLTNLE LNL    
Sbjct: 149 THLVSLELLRVP-----------------------EITDEGLVHLAGLTNLEKLNLSGAR 185

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           I   GL +L  L  L+ L L  T    +GL  L   TNL+ + L     +D  L +L+ L
Sbjct: 186 IAGPGLPHLARLGRLRTLVLGSTT--DAGLAQLGRFTNLKQLYLGTGKYTDAGLAELSKL 243

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
            SL  L L+A  +T+  L  +  L  L  LDL GA ++    A +  FK  R 
Sbjct: 244 RSLTELGLEAGDLTEAVLIHVAGLPNLERLDLGGAPVSQ---AAIEKFKRARP 293



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 99/201 (49%), Gaps = 3/201 (1%)

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
           GS+    L +  +SD+          L+ L +    +TD  L  L GL  L  +      
Sbjct: 77  GSINPATLPQVPISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPK 136

Query: 288 IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
           + + GL +L G  +L  LEL    ++   GL HL+GLTNLE +NLS   I+   L  LA 
Sbjct: 137 VTNAGLAHLKGATHLVSLELLRVPEITDEGLVHLAGLTNLEKLNLSGARIAGPGLPHLAR 196

Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
           L  L++L L +   TD GLA L   T L  L L   + TD+G A L   ++L  L +  G
Sbjct: 197 LGRLRTLVLGS--TTDAGLAQLGRFTNLKQLYLGTGKYTDAGLAELSKLRSLTELGLEAG 254

Query: 407 GLTDAGVKHIKDLSSLTLLNL 427
            LT+A + H+  L +L  L+L
Sbjct: 255 DLTEAVLIHVAGLPNLERLDL 275



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 5/135 (3%)

Query: 67  SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
            ++TD GL+HL   +NL+ L+ +   +I+  GL HL  L  L +L      + T  G+  
Sbjct: 160 PEITDEGLVHLAGLTNLEKLNLSGA-RIAGPGLPHLARLGRLRTLVL---GSTTDAGLAQ 215

Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
                NL +L L        GL  L  L  L  L ++    +T++ +  ++GL NL+ L 
Sbjct: 216 LGRFTNLKQLYLGTGKYTDAGLAELSKLRSLTELGLE-AGDLTEAVLIHVAGLPNLERLD 274

Query: 187 ISCSKVTDSGIAYLK 201
           +  + V+ + I   K
Sbjct: 275 LGGAPVSQAAIEKFK 289


>gi|300694035|ref|YP_003750008.1| type III effector protein [Ralstonia solanacearum PSI07]
 gi|299076072|emb|CBJ35382.1| putative leucine-rich-repeat type III effector protein (GALA1-like)
           [Ralstonia solanacearum PSI07]
          Length = 590

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 99/324 (30%), Positives = 153/324 (47%), Gaps = 30/324 (9%)

Query: 168 ITDSDMKPLSGLTNLKSLQIS-C-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           +TD D+K L    +LK+L +S C +++T  GIA+L  L  L  LN+    + A     L+
Sbjct: 132 VTDDDLKGLPA--SLKALDLSDCRAQITSEGIAHLSKL-PLVRLNVSHNRIDAEGARLLA 188

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
           A+ +L  L+++   +  DG +  +   +L +LN+G N I D     L   T L SLN  +
Sbjct: 189 AMPTLTELDISHNDIRADGAQALADSATLTLLNVGNNRIGDRGAQALAANTKLTSLNASA 248

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
            GIG  G+  L     L  L+LS T +     + L+  T L S+N+  + + D   R LA
Sbjct: 249 NGIGSAGVQALAANATLAALDLSCTSIDEESAQALARNTTLTSLNVRLSRLGDAGARALA 308

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG------------------------ 381
             ++L SLN+   +I   G  AL + T LT LD+ G                        
Sbjct: 309 ATTTLTSLNVSLNEIGPEGAKALANNTSLTSLDIGGNKVGVDGAQALATSMTLTSLVIHR 368

Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
            RI  +GA  L N   L SL+I   GL   G +   D  +LT L ++ N  + D+  + +
Sbjct: 369 NRIEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNETLTSLRIATNM-IGDEGAKWL 427

Query: 442 SGLTGLVSLNVSNSRITSAGLRHL 465
           +  T L SL++  +RI   G + L
Sbjct: 428 ARNTTLTSLDIGENRIGETGAQAL 451



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 110/375 (29%), Positives = 169/375 (45%), Gaps = 7/375 (1%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
           ++L  + LSG DVTD  L  L   ++L++LD + C  QI+  G+ HL  L  L  L+   
Sbjct: 121 AALEKLTLSG-DVTDDDLKGLP--ASLKALDLSDCRAQITSEGIAHLSKLP-LVRLNVSH 176

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
           N  I A+G +  A +  L +LD+        G   L     L  LN+   N I D   + 
Sbjct: 177 NR-IDAEGARLLAAMPTLTELDISHNDIRADGAQALADSATLTLLNVG-NNRIGDRGAQA 234

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           L+  T L SL  S + +  +G+  L     L  L+L    +      +L+   +L  LN+
Sbjct: 235 LAANTKLTSLNASANGIGSAGVQALAANATLAALDLSCTSIDEESAQALARNTTLTSLNV 294

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
              +L D G    +   +L  LN+  NEI  E    L   T+L SL++    +G +G   
Sbjct: 295 RLSRLGDAGARALAATTTLTSLNVSLNEIGPEGAKALANNTSLTSLDIGGNKVGVDGAQA 354

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           L     L  L +   ++  +G + L+  T L S+++S  G+     R      +L SL +
Sbjct: 355 LATSMTLTSLVIHRNRIEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNETLTSLRI 414

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
               I D G   L   T LT LD+   RI ++GA  L     L SL I G  +   GV  
Sbjct: 415 ATNMIGDEGAKWLARNTTLTSLDIGENRIGETGAQALAGNTKLTSLNISGNAIGMMGVLR 474

Query: 416 IKDLSSLTLLNLSQN 430
           +   ++L  LN+S+N
Sbjct: 475 LARNTTLAALNVSRN 489


>gi|348514973|ref|XP_003445014.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oreochromis niloticus]
 gi|410918767|ref|XP_003972856.1| PREDICTED: F-box/LRR-repeat protein 14-like [Takifugu rubripes]
          Length = 400

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 169/317 (53%), Gaps = 48/317 (15%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           + G+ N++SL +S C  +TD+G+  A+++ +  L +LNL  C                  
Sbjct: 86  IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCK----------------- 128

Query: 233 LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GI 288
                 Q++D    + ++ + +L+VL LG  + IT+  L+ +  GL  L+SLNL SC  +
Sbjct: 129 ------QITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHV 182

Query: 289 GDEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-IS 337
            D G+ +L G+         NL+ L L D Q +    L+H+S GLT L  +NLSF G IS
Sbjct: 183 SDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGGIS 242

Query: 338 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-GLTHLDL-FGARITDSGAAYL-R 393
           D  +  L+ ++SL SLNL +   I+DTG   L   T  L+ LD+ F  +I D   AY+ +
Sbjct: 243 DAGMIHLSHMTSLWSLNLRSCDNISDTGTMHLAMGTLRLSGLDVSFCDKIGDQTLAYIAQ 302

Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  LT LV ++
Sbjct: 303 GLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLVGID 362

Query: 452 VSN-SRITSAGLRHLNH 467
           +   ++IT  GL  +  
Sbjct: 363 LYGCTKITKRGLERITQ 379



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 168/327 (51%), Gaps = 32/327 (9%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
           RG+  +  LS RR+ +   QGM       N+  L+L  C  +     G   ++ +  L  
Sbjct: 68  RGIRRVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 121

Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPV 216
           LN+  C  ITDS +  ++  L NL+ L++  CS +T++G+  +  GL +L  LNL  C  
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRH 181

Query: 217 TA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
            +       A +   +A G  +L YL L  CQ L+D   +  SK +  L+VLNL F   I
Sbjct: 182 VSDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGGI 241

Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS 321
           +D  ++HL  +T+L SLNL SC  I D G ++L  G   L  L++S   ++G   L +++
Sbjct: 242 SDAGMIHLSHMTSLWSLNLRSCDNISDTGTMHLAMGTLRLSGLDVSFCDKIGDQTLAYIA 301

Query: 322 -GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHL 377
            GL  L+S++L    ISD  + R +  +  L++LN+    +ITD GL  +   LT L  +
Sbjct: 302 QGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLVGI 361

Query: 378 DLFG-ARITDSGAAYLRNFKNLRSLEI 403
           DL+G  +IT  G   +     L+ L +
Sbjct: 362 DLYGCTKITKRGLERITQLPCLKVLNL 388



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 168/308 (54%), Gaps = 26/308 (8%)

Query: 81  SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLD 137
            N++SL+ + C  ++D GL H  ++ + +L  L+      IT   +   A  L NL  L+
Sbjct: 90  PNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLGRIAQYLKNLEVLE 149

Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLKSLQI 187
           L  C+ I   G L+   GL +L+SLN++ C  ++D  +  L+G+T        NL+ L +
Sbjct: 150 LGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLNLEYLTL 209

Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDD 243
             C K+TD  + ++ KGL KL +LNL  C  ++ A +  LS + SL+ LNL  C  +SD 
Sbjct: 210 QDCQKLTDLSLKHISKGLTKLRVLNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDT 269

Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-G 298
           G    + +G+L++  L++ F ++I D+ L ++ +GL  L+SL+L SC I D+G+  +   
Sbjct: 270 GTMHLA-MGTLRLSGLDVSFCDKIGDQTLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQ 328

Query: 299 LCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 355
           +  L+ L +    ++   GL  ++  LT L  I+L   T I+   L ++  L  LK LNL
Sbjct: 329 MHELRTLNIGQCVRITDKGLELIADHLTQLVGIDLYGCTKITKRGLERITQLPCLKVLNL 388

Query: 356 DARQITDT 363
              Q+T++
Sbjct: 389 GLWQMTES 396



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 141/286 (49%), Gaps = 33/286 (11%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
           + D  +  IA    +L  ++L G S++T++GL+ +      L+SL+   C  +SD G+ H
Sbjct: 130 ITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGH 189

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
           L G++                   A  G +NL  L L+ C ++    L ++ KGL KL  
Sbjct: 190 LAGMTR-----------------SAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLTKLRV 232

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
           LN+ +C  I+D+ M  LS +T+L SL + SC  ++D+G  +L  G  +L+ L++  C   
Sbjct: 233 LNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGTMHLAMGTLRLSGLDVSFCDKI 292

Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVH 271
                +L+ +    Y    L+L  C +SDDG  +  + +  L+ LN+G    ITD+ L  
Sbjct: 293 GD--QTLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLEL 350

Query: 272 LK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
           +   LT L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 351 IADHLTQLVGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTES 396


>gi|116621127|ref|YP_823283.1| hypothetical protein Acid_2008 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116224289|gb|ABJ82998.1| hypothetical protein Acid_2008 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 248

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 116/233 (49%), Gaps = 10/233 (4%)

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
           Q+ D    K      L+ L +    IT++ L  +  +T L  + L    + D  LV+L  
Sbjct: 13  QVDDALWRKLESRRDLEELVIWGGAITNDRLEPVSRMTWLTGVGLGEVPVDDGVLVHLQP 72

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAGLSSLKSLNL 355
           L  L+CL L+ T V     R L   T L  + L     TG  D   R LA   +L+ + +
Sbjct: 73  LRELECLNLAYTGVTGDFTRLLG--TPLRDVRLEGCRRTG--DACARSLARFPTLRQVEM 128

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
               +TD GLAA+ +L     +   G RITD G   +  F NLR L+IC   +TD GV+ 
Sbjct: 129 HMTGLTDDGLAAMAALP--LEVLWLGPRITDRGMETIGGFANLRHLDICTHLITDEGVRA 186

Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHA 468
           +  L  L +L L+++  ++D ++E++S  TGL  LNV+ + IT+ GL  L  A
Sbjct: 187 LAGLQQLQVLWLTRS-RVSDASIEVLSQFTGLRELNVNYTEITAQGLARLKLA 238



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 113/221 (51%), Gaps = 8/221 (3%)

Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
            L+    LE L I W   IT+  ++P+S +T L  + +    V D  + +L+ L++L  L
Sbjct: 21  KLESRRDLEELVI-WGGAITNDRLEPVSRMTWLTGVGLGEVPVDDGVLVHLQPLRELECL 79

Query: 210 NLEGCPVTAACLDSLSALGS-LFYLNLNRCQLSDDGCEK-FSKIGSLKVLNLGFNEITDE 267
           NL    VT    D    LG+ L  + L  C+ + D C +  ++  +L+ + +    +TD+
Sbjct: 80  NLAYTGVTG---DFTRLLGTPLRDVRLEGCRRTGDACARSLARFPTLRQVEMHMTGLTDD 136

Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
            L  +  L  LE L L    I D G+  + G  NL+ L++    +   G+R L+GL  L+
Sbjct: 137 GLAAMAALP-LEVLWLGP-RITDRGMETIGGFANLRHLDICTHLITDEGVRALAGLQQLQ 194

Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
            + L+ + +SD S+  L+  + L+ LN++  +IT  GLA L
Sbjct: 195 VLWLTRSRVSDASIEVLSQFTGLRELNVNYTEITAQGLARL 235



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 5/85 (5%)

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           IT +GM+   G  NL  LD+  CT +    G+  L GL +L+ L +   + ++D+ ++ L
Sbjct: 155 ITDRGMETIGGFANLRHLDI--CTHLITDEGVRALAGLQQLQVLWLT-RSRVSDASIEVL 211

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLK 201
           S  T L+ L ++ +++T  G+A LK
Sbjct: 212 SQFTGLRELNVNYTEITAQGLARLK 236


>gi|95108203|emb|CAD17823.3| lrr-gala family type III effector protein (gala 2) [Ralstonia
            solanacearum GMI1000]
          Length = 1035

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 118/377 (31%), Positives = 174/377 (46%), Gaps = 7/377 (1%)

Query: 57   SSLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
             S+  +DLSG   S V+++GL +L     L SLD +    I + G + L   ++LTSL+ 
Sbjct: 631  PSVRHLDLSGCTGSAVSEAGLAYLARLP-LASLDLSDT-GIGNRGAQALAASASLTSLNL 688

Query: 114  RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
               N I   G +A      L  LD+      + G   L G   L SL ++    I D  +
Sbjct: 689  S-GNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALAGSRSLTSLELR-DTGIEDGGI 746

Query: 174  KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
            + L+  T L+SL IS + ++D   A L   + LT L   GC +T      L+ + SL  L
Sbjct: 747  EALAANTVLRSLDISGNDLSDQSAAALAANRTLTSLKANGCGLTNDMAQQLARIRSLRTL 806

Query: 234  NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
             +    + D G    ++  SL+ LNL  N IT + L  L     L+SL++   G GD G 
Sbjct: 807  EVGSNSIGDAGVLTIARNASLRSLNLSRNPITPQGLYPLALSRTLKSLDVSRIGCGDRGA 866

Query: 294  VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
            + L+G   L  L+L   +V S G R L+    L S++L    I   + R LA    L SL
Sbjct: 867  LLLSGNRALTSLKLGFNRVSSEGARRLAANRTLVSLDLRGNTIDVAAARALANAEPLASL 926

Query: 354  NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
            N+   ++ D    AL     LT LD+   R++   A  L N   L SL I    +   G 
Sbjct: 927  NVSDCRLDDAVACALAESRTLTSLDVSWNRLSHRAARALANNPVLASLYISHNDIGPEGA 986

Query: 414  KHIKDLSSLTLLNLSQN 430
            + + D +SLT L+   N
Sbjct: 987  QALADSASLTFLDARAN 1003



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 124/300 (41%), Gaps = 66/300 (22%)

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
           D + LSGL +   L+            +LKG    TL +L+  P T            L 
Sbjct: 94  DRRALSGLRDHPHLES----------VHLKG--DFTLADLKALPTT------------LR 129

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
           +L+L+ C             GS K             + +L GL  LESLN+    IGD 
Sbjct: 130 HLDLSEC------------TGSAKSF---------RAIAYLAGLP-LESLNVAGAEIGDG 167

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
           G   L    +LK L  +   + +SG R L+    LES++L+   I D   + LAG  SL+
Sbjct: 168 GARLLAANPSLKSLNAASGGISASGARMLAESPTLESLDLTQNAIGDAGAQALAGSRSLR 227

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDL------------------FGARITDSGAAYLR 393
            L +    +TD G  AL     L  LDL                      IT  GA  L 
Sbjct: 228 HLAVRNGLVTDLGTRALALNPALVSLDLGNLVTETGNQVEQDGYDKTANNITAQGAWALA 287

Query: 394 NFKNLRSLEICGGGL-TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
             ++L+SL + G  L  D GV+ +    +LT LN++   N+T  + + ++    L SL+V
Sbjct: 288 QNRSLKSLSVQGNDLCGDDGVRALARNRTLTSLNVAF-TNMTSASAKALADNPVLTSLSV 346



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 95/199 (47%), Gaps = 6/199 (3%)

Query: 268 CLVHLKGLT-NLESLNLDSC---GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
            L  L+ L  ++  L+L  C    + + GL  L  L  L  L+LSDT +G+ G + L+  
Sbjct: 622 SLADLRALPPSVRHLDLSGCTGSAVSEAGLAYLARLP-LASLDLSDTGIGNRGAQALAAS 680

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
            +L S+NLS  GI       L   + L +L++ A  I + G  AL     LT L+L    
Sbjct: 681 ASLTSLNLSGNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALAGSRSLTSLELRDTG 740

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
           I D G   L     LRSL+I G  L+D     +    +LT L  +  C LT+   + ++ 
Sbjct: 741 IEDGGIEALAANTVLRSLDISGNDLSDQSAAALAANRTLTSLK-ANGCGLTNDMAQQLAR 799

Query: 444 LTGLVSLNVSNSRITSAGL 462
           +  L +L V ++ I  AG+
Sbjct: 800 IRSLRTLEVGSNSIGDAGV 818


>gi|432942786|ref|XP_004083072.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oryzias latipes]
          Length = 400

 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 169/308 (54%), Gaps = 26/308 (8%)

Query: 81  SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLD 137
            N++SL+ + C  ++D GL H  ++ + +L  L+      IT   +   A  L NL  L+
Sbjct: 90  PNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLGRIAQYLKNLEMLE 149

Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLKSLQI 187
           L  C+ I   G L+   GL +L+SLN++ C  ++D  +  L+G+T        NL+ L +
Sbjct: 150 LGGCSNITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLNLEYLTL 209

Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
             C K+TD  + ++ KGL KL +LNL  C  ++ A +  LS +GSL+ LNL  C  +SD 
Sbjct: 210 QDCQKLTDLSLKHISKGLTKLRVLNLSFCGGISDAGMIHLSHMGSLWSLNLRSCDNISDT 269

Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-G 298
           G    + +GSL++  L++ F ++I D+ L ++ +GL  L+SL+L SC I D+G+  +   
Sbjct: 270 GTMHLA-MGSLRLSGLDVSFCDKIGDQTLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQ 328

Query: 299 LCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 355
           +  L+ L +    ++   GL  ++  LT L  I+L   T I+   L ++  L  LK LNL
Sbjct: 329 MHELRTLNIGQCVRITDKGLELIADHLTQLVGIDLYGCTKITKRGLERITQLPCLKVLNL 388

Query: 356 DARQITDT 363
              Q+T++
Sbjct: 389 GLWQMTES 396



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 106/315 (33%), Positives = 161/315 (51%), Gaps = 44/315 (13%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           + G+ N++SL +S C  +TD+G+  A+++ +  L +LNL  C          S+LG +  
Sbjct: 86  IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITD-----SSLGRIAQ 140

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDE 291
              N   L   GC   +  G L V                 GL  L+SLNL SC  + D 
Sbjct: 141 YLKNLEMLELGGCSNITNTGLLLVA---------------WGLHRLKSLNLRSCRHVSDV 185

Query: 292 GLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGS 340
           G+ +L G+         NL+ L L D Q +    L+H+S GLT L  +NLSF G ISD  
Sbjct: 186 GIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGGISDAG 245

Query: 341 LRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNF 395
           +  L+ + SL SLNL +   I+DTG    A+ SL  L+ LD+ F  +I D   AY+ +  
Sbjct: 246 MIHLSHMGSLWSLNLRSCDNISDTGTMHLAMGSLR-LSGLDVSFCDKIGDQTLAYIAQGL 304

Query: 396 KNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVS 453
             L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  LT LV +++ 
Sbjct: 305 YQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLVGIDLY 364

Query: 454 N-SRITSAGLRHLNH 467
             ++IT  GL  +  
Sbjct: 365 GCTKITKRGLERITQ 379



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 167/327 (51%), Gaps = 32/327 (9%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
           RG+  +  LS RR+ +   QGM       N+  L+L  C  +     G   ++ +  L  
Sbjct: 68  RGIRRVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 121

Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPV 216
           LN+  C  ITDS +  ++  L NL+ L++  CS +T++G+  +  GL +L  LNL  C  
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLEMLELGGCSNITNTGLLLVAWGLHRLKSLNLRSCRH 181

Query: 217 TA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
            +       A +   +A G  +L YL L  CQ L+D   +  SK +  L+VLNL F   I
Sbjct: 182 VSDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGGI 241

Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS 321
           +D  ++HL  + +L SLNL SC  I D G ++L  G   L  L++S   ++G   L +++
Sbjct: 242 SDAGMIHLSHMGSLWSLNLRSCDNISDTGTMHLAMGSLRLSGLDVSFCDKIGDQTLAYIA 301

Query: 322 -GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHL 377
            GL  L+S++L    ISD  + R +  +  L++LN+    +ITD GL  +   LT L  +
Sbjct: 302 QGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLVGI 361

Query: 378 DLFG-ARITDSGAAYLRNFKNLRSLEI 403
           DL+G  +IT  G   +     L+ L +
Sbjct: 362 DLYGCTKITKRGLERITQLPCLKVLNL 388



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 114/214 (53%), Gaps = 16/214 (7%)

Query: 69  VTDSGLIHL--------KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAI 119
           V+D G+ HL        + C NL+ L    C +++D  L+H+ +GL+ L  L+      I
Sbjct: 182 VSDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGGI 241

Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPLS 177
           +  GM   + + +L  L+L  C  I   G ++L  G ++L  L++ +C+ I D  +  ++
Sbjct: 242 SDAGMIHLSHMGSLWSLNLRSCDNISDTGTMHLAMGSLRLSGLDVSFCDKIGDQTLAYIA 301

Query: 178 -GLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYL 233
            GL  LKSL +    ++D GI   ++ + +L  LN+  C  +T   L+ ++  L  L  +
Sbjct: 302 QGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLVGI 361

Query: 234 NLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITD 266
           +L  C +++  G E+ +++  LKVLNLG  ++T+
Sbjct: 362 DLYGCTKITKRGLERITQLPCLKVLNLGLWQMTE 395


>gi|157865941|ref|XP_001681677.1| putative surface antigen protein [Leishmania major strain Friedlin]
 gi|68124975|emb|CAJ02737.1| putative surface antigen protein [Leishmania major strain Friedlin]
          Length = 776

 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 175/375 (46%), Gaps = 8/375 (2%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+  SL +++L G+ V+ +         +L++L+     Q+S         +++L +L+ 
Sbjct: 251 SEMKSLTNLELEGTQVSGTLPPGWSSIKSLRTLNLE-GTQVSGSLPPEWVSMASLRTLNL 309

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK-LESLNIKWCNCITDSD 172
                ++      ++ + +L  L+LE  T++ G L      MK L +LN++    ++ S 
Sbjct: 310 E-GTQVSGTLPPGWSEMKSLTSLELE-GTQVSGTLPPRWSEMKSLRTLNLE-GTQVSGSL 366

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
                 + +L++L +  ++V+ S       +  L  LNLEG  V+       S + SL  
Sbjct: 367 PPQWVSMASLRTLNLEGTQVSGSLPPEWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTS 426

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           L L   Q+S     ++S++ SL+ LNL   +++         + +L +LNL+   +    
Sbjct: 427 LELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGSLPPEWVSMASLRTLNLEGTQVSGTL 486

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
               + + +L  LEL  TQV  +     S + +L ++NL  T +S     +   ++SL++
Sbjct: 487 PPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGSLPPEWVSMASLRT 546

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG---GGLT 409
           LNL+  Q++ T     + +  LT L+L G +++ +        K+LR+L + G    G  
Sbjct: 547 LNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGAL 606

Query: 410 DAGVKHIKDLSSLTL 424
             G   +K L++L L
Sbjct: 607 PPGWGEMKSLTNLYL 621



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 107/431 (24%), Positives = 184/431 (42%), Gaps = 40/431 (9%)

Query: 6   ISQQIF---NELVYSRCLTEVSLEA-FRDCALQDLCLGQYP----GVNDKWMDVIASQGS 57
           +S  +F   N   Y+  L E+ +   +R   ++DL     P     + D W     SQ  
Sbjct: 78  VSVNVFVGLNVSTYAGTLPEIPVNVDYRHVMIRDLGFWNMPLLSGTLPDSW-----SQLG 132

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
            LLSV LSG  V+ +          L+ L    C         HL G  +L SL      
Sbjct: 133 GLLSVTLSGCGVSGTLPASWGLMVRLRELTVRDC--------RHLTG--SLPSL------ 176

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPL 176
                    ++ L NL KL L R  ++ G L      +  L  L I     IT +     
Sbjct: 177 ---------WSWLPNLQKLVL-RQLQLSGTLPAEWSRVTSLLELEIVAAGDITGTLPPEW 226

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           S + +L++L +  ++V+ +       ++ LT L LEG  V+       S++ SL  LNL 
Sbjct: 227 SSIKSLRTLNLEGTQVSGTLPPGWSEMKSLTNLELEGTQVSGTLPPGWSSIKSLRTLNLE 286

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             Q+S     ++  + SL+ LNL   +++         + +L SL L+   +        
Sbjct: 287 GTQVSGSLPPEWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRW 346

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
           + + +L+ L L  TQV  S       + +L ++NL  T +S     +   ++SL++LNL+
Sbjct: 347 SEMKSLRTLNLEGTQVSGSLPPQWVSMASLRTLNLEGTQVSGSLPPEWVSMASLRTLNLE 406

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
             Q++ T     + +  LT L+L G +++ +        K+LR+L + G  ++ +     
Sbjct: 407 GTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGSLPPEW 466

Query: 417 KDLSSLTLLNL 427
             ++SL  LNL
Sbjct: 467 VSMASLRTLNL 477



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 163/364 (44%), Gaps = 27/364 (7%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+  SL S++L G+ V+ +      +  +L++L+     Q+S         +++L +L+ 
Sbjct: 323 SEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLE-GTQVSGSLPPQWVSMASLRTLNL 381

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHG----GLVNLKGLMKLE--------SLN 161
                ++      +  + +L  L+LE  T++ G    G   +K L  LE        +L 
Sbjct: 382 E-GTQVSGSLPPEWVSMASLRTLNLE-GTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLP 439

Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
            +W      S+MK      +L++L +  ++V+ S       +  L  LNLEG  V+    
Sbjct: 440 PRW------SEMK------SLRTLNLEGTQVSGSLPPEWVSMASLRTLNLEGTQVSGTLP 487

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
              S + SL  L L   Q+S     ++S++ SL+ LNL   +++         + +L +L
Sbjct: 488 PGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGSLPPEWVSMASLRTL 547

Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
           NL+   +        + + +L  LEL  TQV  +     S + +L ++NL  T +S    
Sbjct: 548 NLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGALP 607

Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
                + SL +L L+  Q++ +       +  LT+L L G +++ S      +  +LR+L
Sbjct: 608 PGWGEMKSLTNLYLEGTQLSGSLPTEWRGMKSLTNLYLEGTQVSGSLPPQWSSLTSLRTL 667

Query: 402 EICG 405
           ++ G
Sbjct: 668 DLEG 671



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 168/373 (45%), Gaps = 7/373 (1%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           +SL +++L G+ V+ +      +  +L SL+     Q+S         + +L +L+    
Sbjct: 302 ASLRTLNLEGTQVSGTLPPGWSEMKSLTSLELE-GTQVSGTLPPRWSEMKSLRTLNLE-G 359

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKP 175
             ++      +  + +L  L+LE  T++ G L      +  L +LN++         + P
Sbjct: 360 TQVSGSLPPQWVSMASLRTLNLE-GTQVSGSLPPEWVSMASLRTLNLE--GTQVSGTLPP 416

Query: 176 -LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
             S + +L SL++  ++V+ +       ++ L  LNLEG  V+ +      ++ SL  LN
Sbjct: 417 GWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGSLPPEWVSMASLRTLN 476

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           L   Q+S      +S++ SL  L L   +++         + +L +LNL+   +      
Sbjct: 477 LEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGSLPP 536

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
               + +L+ L L  TQV  +     S + +L S+ L  T +S     + + + SL++LN
Sbjct: 537 EWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLN 596

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
           L+  Q++         +  LT+L L G +++ S     R  K+L +L + G  ++ +   
Sbjct: 597 LEGTQVSGALPPGWGEMKSLTNLYLEGTQLSGSLPTEWRGMKSLTNLYLEGTQVSGSLPP 656

Query: 415 HIKDLSSLTLLNL 427
               L+SL  L+L
Sbjct: 657 QWSSLTSLRTLDL 669



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 154/336 (45%), Gaps = 11/336 (3%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+  SL +++L G+ V+ S        ++L++L+     Q+S         +++L +L+ 
Sbjct: 347 SEMKSLRTLNLEGTQVSGSLPPQWVSMASLRTLNLE-GTQVSGSLPPEWVSMASLRTLNL 405

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK-LESLNIKWCNCITDSD 172
                ++      ++ + +L  L+LE  T++ G L      MK L +LN++    ++ S 
Sbjct: 406 E-GTQVSGTLPPGWSEMKSLTSLELE-GTQVSGTLPPRWSEMKSLRTLNLE-GTQVSGSL 462

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
                 + +L++L +  ++V+ +       ++ LT L LEG  V+       S + SL  
Sbjct: 463 PPEWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRT 522

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           LNL   Q+S     ++  + SL+ LNL   +++         + +L SL L+   +    
Sbjct: 523 LNLEGTQVSGSLPPEWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTL 582

Query: 293 LVNLTGLCNLKCLELSDTQVG---SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
               + + +L+ L L  TQV      G   +  LTNL    L  T +S     +  G+ S
Sbjct: 583 PPRWSEMKSLRTLNLEGTQVSGALPPGWGEMKSLTNL---YLEGTQLSGSLPTEWRGMKS 639

Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           L +L L+  Q++ +     +SLT L  LDL G +++
Sbjct: 640 LTNLYLEGTQVSGSLPPQWSSLTSLRTLDLEGTQVS 675


>gi|296123881|ref|YP_003631659.1| serine/threonine protein kinase-related protein [Planctomyces
            limnophilus DSM 3776]
 gi|296016221|gb|ADG69460.1| Serine/threonine protein kinase-related protein [Planctomyces
            limnophilus DSM 3776]
          Length = 1655

 Score = 92.0 bits (227), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 122/482 (25%), Positives = 186/482 (38%), Gaps = 85/482 (17%)

Query: 61   SVDLSGSDVTDSGLIHLKD------CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
            SV L+G +  +   +  KD      C +L+ +   F   ISD  L+ L  L  LT L   
Sbjct: 1143 SVQLTGIEFRNKRDLDAKDFEVFSGCRDLEKVRLGFS-SISDAHLKPLENLPKLTHLELS 1201

Query: 115  RNNAITAQGMKAFAGLINLV--------------------KLDLERCTRIHG-GLVNLKG 153
            +   +T   ++ F  L +L                      LDL   TRI G  L     
Sbjct: 1202 QCEKVTGAAIRKFKHLTHLEAWAVPVGDDDLAPLKDNPFRNLDLGG-TRITGKALAAFTN 1260

Query: 154  LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
            L  L S  + + + I + D+  L     L  L +  + + D G+  +  L+ L  L L+G
Sbjct: 1261 LSDLRSSRLAFTS-IKNKDLAALKDCHRLTFLALYNTGIGDEGVREICELKALRSLELQG 1319

Query: 214  CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK----------IGSLKVLNLGFNE 263
              VT      L  L  L  ++L   Q++ +  E F K           G L       +E
Sbjct: 1320 SKVTNEVFFYLMKLPHLLSVDLRYTQVTPEAIESFRKQKPLCEVKCDAGVLPRWEPNGDE 1379

Query: 264  ITDEC--------LVHLKG----LTNLESLNLDSCGIGDEGLVNLTGLC--NLKCLELSD 309
            +             V  +G    L N +        I    L  LTG+    LK L   D
Sbjct: 1380 LVKNAKADRAAAAFVLKQGKYVWLDNAKDPLHGDPAILPPHLFKLTGISLEGLKTLTPRD 1439

Query: 310  TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369
             ++         G  NL  + L   GI+D  LR   G +S+  L LD + +T  GL+  +
Sbjct: 1440 FEI-------FKGCQNLSDLQLLNMGITDEHLRAFEGTTSITKLKLDGQAVTSKGLSYFS 1492

Query: 370  SLTGLT-----------------------HLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
                LT                       +L+L G RITD+  A   + +NL    +   
Sbjct: 1493 GCKRLTFLSVWATQADDKFIQSIASPDYTYLNLGGTRITDASIAAFESLQNLEMATLNFT 1552

Query: 407  GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
            GLTD G++H+    +LT L L+    LTD + ++   L  L  L +SN++ +  GL  L 
Sbjct: 1553 GLTDEGIEHLASAENLTYLGLNHT-RLTDASAKVFLKLNQLEELTLSNTQFSDQGLLLLV 1611

Query: 467  HA 468
            +A
Sbjct: 1612 NA 1613



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 95/364 (26%), Positives = 150/364 (41%), Gaps = 21/364 (5%)

Query: 25   LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
            L A +DC           G+ D+ +  I  +  +L S++L GS VT+    +L    +L 
Sbjct: 1279 LAALKDCHRLTFLALYNTGIGDEGVREIC-ELKALRSLELQGSKVTNEVFFYLMKLPHLL 1337

Query: 85   SLDFNFCIQISDGGLEHLRGLSNLTSL---------------SFRRNNAITAQGMKAFAG 129
            S+D  +  Q++   +E  R    L  +                  +N             
Sbjct: 1338 SVDLRY-TQVTPEAIESFRKQKPLCEVKCDAGVLPRWEPNGDELVKNAKADRAAAAFVLK 1396

Query: 130  LINLVKLDLERCTRIHGGLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
                V LD  +   +HG    L   L KL  ++++    +T  D +   G  NL  LQ+ 
Sbjct: 1397 QGKYVWLDNAK-DPLHGDPAILPPHLFKLTGISLEGLKTLTPRDFEIFKGCQNLSDLQLL 1455

Query: 189  CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
               +TD  +   +G   +T L L+G  VT+  L   S    L +L++   Q  D   +  
Sbjct: 1456 NMGITDEHLRAFEGTTSITKLKLDGQAVTSKGLSYFSGCKRLTFLSVWATQADDKFIQSI 1515

Query: 249  SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
            +       LNLG   ITD  +   + L NLE   L+  G+ DEG+ +L    NL  L L+
Sbjct: 1516 AS-PDYTYLNLGGTRITDASIAAFESLQNLEMATLNFTGLTDEGIEHLASAENLTYLGLN 1574

Query: 309  DTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQITDTGLAA 367
             T++  +  +    L  LE + LS T  SD G L  +  L +LK LNL   ++T   +  
Sbjct: 1575 HTRLTDASAKVFLKLNQLEELTLSNTQFSDQGLLLLVNALPNLKRLNLLETKVTADSVDK 1634

Query: 368  LTSL 371
              SL
Sbjct: 1635 FQSL 1638



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 101/401 (25%), Positives = 169/401 (42%), Gaps = 15/401 (3%)

Query: 61   SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
            ++DL G+ +T   L    + S+L+S    F   I +  L  L+    LT L+   N  I 
Sbjct: 1242 NLDLGGTRITGKALAAFTNLSDLRSSRLAF-TSIKNKDLAALKDCHRLTFLALY-NTGIG 1299

Query: 121  AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
             +G++    L  L  L+L+     +     L  L  L S+++++     ++       + 
Sbjct: 1300 DEGVREICELKALRSLELQGSKVTNEVFFYLMKLPHLLSVDLRYTQVTPEA-------IE 1352

Query: 181  NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
            + +  +  C    D+G+  L   +      ++      A    +   G   +L+  +  L
Sbjct: 1353 SFRKQKPLCEVKCDAGV--LPRWEPNGDELVKNAKADRAAAAFVLKQGKYVWLDNAKDPL 1410

Query: 241  SDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
              D       +  L  ++L G   +T       KG  NL  L L + GI DE L    G 
Sbjct: 1411 HGDPAILPPHLFKLTGISLEGLKTLTPRDFEIFKGCQNLSDLQLLNMGITDEHLRAFEGT 1470

Query: 300  CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
             ++  L+L    V S GL + SG   L  +++  T   D  ++ +A       LNL   +
Sbjct: 1471 TSITKLKLDGQAVTSKGLSYFSGCKRLTFLSVWATQADDKFIQSIAS-PDYTYLNLGGTR 1529

Query: 360  ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
            ITD  +AA  SL  L    L    +TD G  +L + +NL  L +    LTDA  K    L
Sbjct: 1530 ITDASIAAFESLQNLEMATLNFTGLTDEGIEHLASAENLTYLGLNHTRLTDASAKVFLKL 1589

Query: 420  SSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSNSRITS 459
            + L  L LS N   +D+  L L++ L  L  LN+  +++T+
Sbjct: 1590 NQLEELTLS-NTQFSDQGLLLLVNALPNLKRLNLLETKVTA 1629


>gi|283778456|ref|YP_003369211.1| hypothetical protein Psta_0665 [Pirellula staleyi DSM 6068]
 gi|283436909|gb|ADB15351.1| hypothetical protein Psta_0665 [Pirellula staleyi DSM 6068]
          Length = 397

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 125/259 (48%), Gaps = 4/259 (1%)

Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
            G+  L G++ ++L    G   T  C+D L  +  L  +++++  +S  G  + +    L
Sbjct: 104 EGVHQLHGIRDISL---HGRAFTDKCIDELIKVHQLRGVSISKTSISPAGLARLASCREL 160

Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
             ++L   EI D+ L  + G+ +++ L +    I DEGL +     NL  LE+    +  
Sbjct: 161 VSISLWGPEIEDDHLKAVAGIPSVQHLQVIRSSITDEGLQHFAERENLATLEIYVAAITD 220

Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
           +GL+ L  L  L  + L  T ++D S+  +    SL+ L LDA  I+D GL  L+    L
Sbjct: 221 AGLKSLVNLPKLRKLELLGTSVTDQSMPTIGRFRSLRQLRLDAHSISDEGLTFLSRNEKL 280

Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
             L + G  I  +G A L   +NLR ++     + D G+  I  L  LTLL + Q+  +T
Sbjct: 281 EVLLVSGCPIDGTGFAKLCELQNLRLVDASSTNINDEGLAAIASLPGLTLLEIRQS-KVT 339

Query: 435 DKTLELISGLTGLVSLNVS 453
            K L+ +     L SL +S
Sbjct: 340 GKGLQHLERSEQLRSLLIS 358



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 117/238 (49%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
              TD  +  L  +  L+ + IS + ++ +G+A L   ++L  ++L G  +    L +++
Sbjct: 120 RAFTDKCIDELIKVHQLRGVSISKTSISPAGLARLASCRELVSISLWGPEIEDDHLKAVA 179

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            + S+ +L + R  ++D+G + F++  +L  L +    ITD  L  L  L  L  L L  
Sbjct: 180 GIPSVQHLQVIRSSITDEGLQHFAERENLATLEIYVAAITDAGLKSLVNLPKLRKLELLG 239

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
             + D+ +  +    +L+ L L    +   GL  LS    LE + +S   I      KL 
Sbjct: 240 TSVTDQSMPTIGRFRSLRQLRLDAHSISDEGLTFLSRNEKLEVLLVSGCPIDGTGFAKLC 299

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
            L +L+ ++  +  I D GLAA+ SL GLT L++  +++T  G  +L   + LRSL I
Sbjct: 300 ELQNLRLVDASSTNINDEGLAAIASLPGLTLLEIRQSKVTGKGLQHLERSEQLRSLLI 357



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 25/252 (9%)

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           S D  E   ++  ++ ++L     TD+C+  L  +  L  +++    I   GL  L    
Sbjct: 99  SGDDIEGVHQLHGIRDISLHGRAFTDKCIDELIKVHQLRGVSISKTSISPAGLARLASCR 158

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            L  + L   ++    L+ ++G+ +++ + +  + I+D  L+  A   +L +L +    I
Sbjct: 159 ELVSISLWGPEIEDDHLKAVAGIPSVQHLQVIRSSITDEGLQHFAERENLATLEIYVAAI 218

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK--- 417
           TD GL +L +L  L  L+L G  +TD     +  F++LR L +    ++D G+  +    
Sbjct: 219 TDAGLKSLVNLPKLRKLELLGTSVTDQSMPTIGRFRSLRQLRLDAHSISDEGLTFLSRNE 278

Query: 418 ---------------------DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
                                +L +L L++ S + N+ D+ L  I+ L GL  L +  S+
Sbjct: 279 KLEVLLVSGCPIDGTGFAKLCELQNLRLVDAS-STNINDEGLAAIASLPGLTLLEIRQSK 337

Query: 457 ITSAGLRHLNHA 468
           +T  GL+HL  +
Sbjct: 338 VTGKGLQHLERS 349



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 139/311 (44%), Gaps = 25/311 (8%)

Query: 40  QYPGVND---------KWMDVIASQ--GSSLLSVDL----SGSDVTDSGLIH-LKDCSNL 83
           +YP V D         +W+  +  +  G+++L+V      SG D+     +H ++D S L
Sbjct: 59  EYPNVIDGSIQQSNQPRWLRYLFGENFGANVLTVTARGTSSGDDIEGVHQLHGIRDIS-L 117

Query: 84  QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
               F      +D  ++ L  +  L  +S  +  +I+  G+   A    LV + L     
Sbjct: 118 HGRAF------TDKCIDELIKVHQLRGVSISKT-SISPAGLARLASCRELVSISLWGPEI 170

Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
               L  + G+  ++ L +   + ITD  ++  +   NL +L+I  + +TD+G+  L  L
Sbjct: 171 EDDHLKAVAGIPSVQHLQVI-RSSITDEGLQHFAERENLATLEIYVAAITDAGLKSLVNL 229

Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
            KL  L L G  VT   + ++    SL  L L+   +SD+G    S+   L+VL +    
Sbjct: 230 PKLRKLELLGTSVTDQSMPTIGRFRSLRQLRLDAHSISDEGLTFLSRNEKLEVLLVSGCP 289

Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
           I       L  L NL  ++  S  I DEGL  +  L  L  LE+  ++V   GL+HL   
Sbjct: 290 IDGTGFAKLCELQNLRLVDASSTNINDEGLAAIASLPGLTLLEIRQSKVTGKGLQHLERS 349

Query: 324 TNLESINLSFT 334
             L S+ +S T
Sbjct: 350 EQLRSLLISIT 360



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 96/208 (46%), Gaps = 1/208 (0%)

Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
            GL  L    +L S+++ W   I D  +K ++G+ +++ LQ+  S +TD G+ +    + 
Sbjct: 149 AGLARLASCRELVSISL-WGPEIEDDHLKAVAGIPSVQHLQVIRSSITDEGLQHFAEREN 207

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
           L  L +    +T A L SL  L  L  L L    ++D       +  SL+ L L  + I+
Sbjct: 208 LATLEIYVAAITDAGLKSLVNLPKLRKLELLGTSVTDQSMPTIGRFRSLRQLRLDAHSIS 267

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
           DE L  L     LE L +  C I   G   L  L NL+ ++ S T +   GL  ++ L  
Sbjct: 268 DEGLTFLSRNEKLEVLLVSGCPIDGTGFAKLCELQNLRLVDASSTNINDEGLAAIASLPG 327

Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSL 353
           L  + +  + ++   L+ L     L+SL
Sbjct: 328 LTLLEIRQSKVTGKGLQHLERSEQLRSL 355


>gi|168030611|ref|XP_001767816.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680898|gb|EDQ67330.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 628

 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 133/455 (29%), Positives = 208/455 (45%), Gaps = 71/455 (15%)

Query: 18  RCLTEVSLEAFRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIH 76
           R +T+  L +   C  L+ L L    G+ D  +  +A     L  +DLS ++V+D GL  
Sbjct: 145 RDVTDSGLSSLSRCKGLRILGLKYCSGLGDFGIQNVAIGCQRLYIIDLSFTEVSDKGLAS 204

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGL-INLV 134
           L    +L+ L    CI ++D GL  LR G  +L  L+  +   +++QG+    G  + L 
Sbjct: 205 LALLKHLECLSLISCINVTDKGLSCLRNGCKSLQKLNVAKCLNVSSQGIIELTGSSVQLQ 264

Query: 135 KLDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSK 191
           +L+L  C  I   L  + + L  L+ + +  C  I DS++  + SG   LK L +S C  
Sbjct: 265 ELNLSYCKLISNVLFASFQKLKTLQVVKLDGCV-IGDSNLSLIGSGCIELKELSLSKCQG 323

Query: 192 VTDSGIAYL----KGLQKLTL-----------------------LNLEGCPVTAACLDSL 224
           VTD+G+  +     GLQKL L                       L +E C +  A  + L
Sbjct: 324 VTDAGVVGVVTSCTGLQKLDLTCCRDITDTALKAVATSCTGLLSLRMENCLLVTA--EGL 381

Query: 225 SALG-SLFYL---NLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKG-LTNL 278
             +G S  YL   +L  C L+D+G +   +   L++L +G+  +IT   L  +    TNL
Sbjct: 382 IMIGKSCVYLEELDLTDCNLNDNGLKSIGRCRGLRLLKVGYCMDITYAGLASIGATCTNL 441

Query: 279 ESLN-LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGI 336
             L+   S GI DEG+  +                        SG   L+ +NLS+ + I
Sbjct: 442 RELDCYRSVGISDEGVAAIA-----------------------SGCKRLKVVNLSYCSSI 478

Query: 337 SDGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL-TSLTGLTHLDLFGAR-ITDSGAAYL- 392
           +D SL  LA LS L  L L A  QIT  G++ +  S   L  LD+   + + D G   L 
Sbjct: 479 TDASLHSLALLSDLVQLELRACSQITSAGISYIGASCKHLRELDVKRCKFVGDHGVLALS 538

Query: 393 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
           R  +NLR + +    +TDAG+  I ++S +  + L
Sbjct: 539 RGCRNLRQVNLSYTAVTDAGMMAIANMSCIQDMKL 573



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 127/445 (28%), Positives = 217/445 (48%), Gaps = 26/445 (5%)

Query: 44  VNDKWMDVIASQGSS-LLSVD-LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
           V D+ +  +A   SS L+S+  +     T +G   L +C  LQ +D  FC Q+ D  +  
Sbjct: 70  VTDQCLAAVAKFTSSRLISIKAIRTKGFTIAGFRSLVECRFLQDVDVTFCTQVGDAEVIA 129

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLES 159
           L  L +L  L       +T  G+ + +    L  L L+ C+ +   G+ N+  G  +L  
Sbjct: 130 LSELRHLQKLKLDSCRDVTDSGLSSLSRCKGLRILGLKYCSGLGDFGIQNVAIGCQRLYI 189

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAYLK-GLQKLTLLNLEGC-PV 216
           +++ +   ++D  +  L+ L +L+ L  ISC  VTD G++ L+ G + L  LN+  C  V
Sbjct: 190 IDLSFTE-VSDKGLASLALLKHLECLSLISCINVTDKGLSCLRNGCKSLQKLNVAKCLNV 248

Query: 217 TAACLDSLSALG-SLFYLNLNRCQL-SDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-K 273
           ++  +  L+     L  LNL+ C+L S+     F K+ +L+V+ L    I D  L  +  
Sbjct: 249 SSQGIIELTGSSVQLQELNLSYCKLISNVLFASFQKLKTLQVVKLDGCVIGDSNLSLIGS 308

Query: 274 GLTNLESLNLDSC-GIGDEGLVNL----TGLCNLK---CLELSDTQVGSSGLRHLSGLTN 325
           G   L+ L+L  C G+ D G+V +    TGL  L    C +++DT + +      +GL +
Sbjct: 309 GCIELKELSLSKCQGVTDAGVVGVVTSCTGLQKLDLTCCRDITDTALKAVA-TSCTGLLS 367

Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGARI 384
           L   N      ++G +        L+ L+L    + D GL ++    GL  L + +   I
Sbjct: 368 LRMENCLLV-TAEGLIMIGKSCVYLEELDLTDCNLNDNGLKSIGRCRGLRLLKVGYCMDI 426

Query: 385 TDSGAAYL-RNFKNLRSLEICGG-GLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELI 441
           T +G A +     NLR L+     G++D GV  I      L ++NLS   ++TD +L  +
Sbjct: 427 TYAGLASIGATCTNLRELDCYRSVGISDEGVAAIASGCKRLKVVNLSYCSSITDASLHSL 486

Query: 442 SGLTGLVSLNV-SNSRITSAGLRHL 465
           + L+ LV L + + S+ITSAG+ ++
Sbjct: 487 ALLSDLVQLELRACSQITSAGISYI 511



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 181/397 (45%), Gaps = 84/397 (21%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
           L+    ++ LD + C++++D   + L  ++  TS       AI  +G    AG  +LV+ 
Sbjct: 53  LRRYPQIECLDLSSCVEVTD---QCLAAVAKFTSSRLISIKAIRTKGF-TIAGFRSLVEC 108

Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDS 195
                               L+ +++ +C  + D+++  LS L +L+ L++ SC  VTDS
Sbjct: 109 RF------------------LQDVDVTFCTQVGDAEVIALSELRHLQKLKLDSCRDVTDS 150

Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
           G++ L   + L +L L+ C          S LG     N+        GC++      L 
Sbjct: 151 GLSSLSRCKGLRILGLKYC----------SGLGDFGIQNVA------IGCQR------LY 188

Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN-------LKCLEL 307
           +++L F E++D+ L  L  L +LE L+L SC  + D+GL  L   C         KCL +
Sbjct: 189 IIDLSFTEVSDKGLASLALLKHLECLSLISCINVTDKGLSCLRNGCKSLQKLNVAKCLNV 248

Query: 308 SDTQVGSSGLRHLSGLT-NLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
           S     S G+  L+G +  L+ +NLS+   IS+        L +L+ + LD   I D+ L
Sbjct: 249 S-----SQGIIELTGSSVQLQELNLSYCKLISNVLFASFQKLKTLQVVKLDGCVIGDSNL 303

Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH-IKDLSSLTL 424
               SL G             SG   L+      SL  C  G+TDAGV   +   + L  
Sbjct: 304 ----SLIG-------------SGCIELKEL----SLSKC-QGVTDAGVVGVVTSCTGLQK 341

Query: 425 LNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSRITSA 460
           L+L+   ++TD  L+ ++   TGL+SL + N  + +A
Sbjct: 342 LDLTCCRDITDTALKAVATSCTGLLSLRMENCLLVTA 378


>gi|83592173|ref|YP_425925.1| hypothetical protein Rru_A0837 [Rhodospirillum rubrum ATCC 11170]
 gi|386348881|ref|YP_006047129.1| hypothetical protein F11_04310 [Rhodospirillum rubrum F11]
 gi|83575087|gb|ABC21638.1| Leucine-rich repeat [Rhodospirillum rubrum ATCC 11170]
 gi|346717317|gb|AEO47332.1| leucine-rich repeat-containing protein [Rhodospirillum rubrum F11]
          Length = 1085

 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 160/307 (52%), Gaps = 34/307 (11%)

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           +D+ PL+GL NL+ L +S + VTD  +  L G++ L  L L    VT   L  L+ L +L
Sbjct: 85  TDLTPLTGLENLQGLFLSYTAVTD--LTPLTGIKSLQSLILSETQVTD--LTPLAGLKNL 140

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
             +NL+  Q++D      + + +L+ L L +  +TD  L  L GL NL+ L L    + D
Sbjct: 141 QSINLSATQITD--LAPLAGLENLQNLTLSYTTVTD--LAPLAGLENLQHLILLGTRVID 196

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSS 349
             L  L GL +L+ L+LS T+V  + +  L GL +L+S++L  T ++D   L  L  L S
Sbjct: 197 --LTPLAGLKSLQSLDLSGTRV--TNIAPLVGLKSLQSLDLRRTRVTDIAPLVGLKSLKS 252

Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409
           L+SLNL    +TD  LA L  L  L +L L    +TD   A L   +NL+++++ G  + 
Sbjct: 253 LQSLNLSRTPVTD--LAPLAGLENLQNLTLSYTTVTD--LAPLAGLENLQNIDLGGTEVI 308

Query: 410 D----AGVK----------HIKDLSSLTLLNLSQNCNLTDKT---LELISGLTGLVSLNV 452
           D    AG++           + DL+ L  L   QN  L+  T   L  ++GL  L S++ 
Sbjct: 309 DLAPLAGLENLQNIDLGGTEVIDLAPLAGLENLQNLTLSYTTVTDLAPLAGLENLQSIDC 368

Query: 453 SNSRITS 459
           S  RITS
Sbjct: 369 SGCRITS 375



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 153/277 (55%), Gaps = 21/277 (7%)

Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
           L  L G+  L+SL +        +D+ PL+GL NL+S+ +S +++TD  +A L GL+ L 
Sbjct: 109 LTPLTGIKSLQSLILSETQV---TDLTPLAGLKNLQSINLSATQITD--LAPLAGLENLQ 163

Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
            L L    VT   L  L+ L +L +L L   ++ D      + + SL+ L+L    +T+ 
Sbjct: 164 NLTLSYTTVTD--LAPLAGLENLQHLILLGTRVID--LTPLAGLKSLQSLDLSGTRVTN- 218

Query: 268 CLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
            +  L GL +L+SL+L    + D   LV L  L +L+ L LS T V  + L  L+GL NL
Sbjct: 219 -IAPLVGLKSLQSLDLRRTRVTDIAPLVGLKSLKSLQSLNLSRTPV--TDLAPLAGLENL 275

Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
           +++ LS+T ++D  L  LAGL +L++++L   ++ D  LA L  L  L ++DL G  + D
Sbjct: 276 QNLTLSYTTVTD--LAPLAGLENLQNIDLGGTEVID--LAPLAGLENLQNIDLGGTEVID 331

Query: 387 SGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSL 422
              A L   +NL++L +    +TD A +  +++L S+
Sbjct: 332 --LAPLAGLENLQNLTLSYTTVTDLAPLAGLENLQSI 366



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 85/272 (31%), Positives = 132/272 (48%), Gaps = 42/272 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD----GGLEHLR----------- 103
           L S++LS + +TD  L  L    NLQ+L  ++   ++D     GLE+L+           
Sbjct: 140 LQSINLSATQITD--LAPLAGLENLQNLTLSYTT-VTDLAPLAGLENLQHLILLGTRVID 196

Query: 104 -----GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH--GGLVNLKGLMK 156
                GL +L SL     +      +    GL +L  LDL R TR+     LV LK L  
Sbjct: 197 LTPLAGLKSLQSLDL---SGTRVTNIAPLVGLKSLQSLDLRR-TRVTDIAPLVGLKSLKS 252

Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
           L+SLN+        +D+ PL+GL NL++L +S + VTD  +A L GL+ L  ++L G  V
Sbjct: 253 LQSLNLSRTPV---TDLAPLAGLENLQNLTLSYTTVTD--LAPLAGLENLQNIDLGGTEV 307

Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
               L  L+ L +L  ++L   ++ D      + + +L+ L L +  +TD  L  L GL 
Sbjct: 308 ID--LAPLAGLENLQNIDLGGTEVID--LAPLAGLENLQNLTLSYTTVTD--LAPLAGLE 361

Query: 277 NLESLNLDSCGIG--DEGLVNLTGLCNLKCLE 306
           NL+S++   C I    +GL +   L  + C E
Sbjct: 362 NLQSIDCSGCRITSVPDGLFDSPALRWVICSE 393



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 114/225 (50%), Gaps = 28/225 (12%)

Query: 58  SLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           SL S+DL  + VTD + L+ LK   +LQSL+ +    ++D  L  L GL NL +L+    
Sbjct: 227 SLQSLDLRRTRVTDIAPLVGLKSLKSLQSLNLSRT-PVTD--LAPLAGLENLQNLTL--- 280

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           +  T   +   AGL NL  +DL     I   L  L GL  L+++++     I   D+ PL
Sbjct: 281 SYTTVTDLAPLAGLENLQNIDLGGTEVID--LAPLAGLENLQNIDLGGTEVI---DLAPL 335

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           +GL NL++L +S + VTD  +A L GL+ L  ++  GC +T+   D L    +L ++  +
Sbjct: 336 AGLENLQNLTLSYTTVTD--LAPLAGLENLQSIDCSGCRITSVP-DGLFDSPALRWVICS 392

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG-LTNLES 280
              L+D   E  S+ G+            D CL H++  L +LE 
Sbjct: 393 EGALADIPAEALSQGGA------------DNCLPHIRAHLRDLEQ 425


>gi|290991127|ref|XP_002678187.1| predicted protein [Naegleria gruberi]
 gi|284091798|gb|EFC45443.1| predicted protein [Naegleria gruberi]
          Length = 265

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 124/245 (50%), Gaps = 3/245 (1%)

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLKGLQKLTL 208
           +K L +L+SL I+    I   D++   G L  L SL IS C  + + G+  ++ L KLT 
Sbjct: 10  MKKLNQLKSLKIR-SKFIFGEDLRSYIGELKQLNSLNISDCINIGNRGVNVIRELDKLTE 68

Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
           L+++ C +       + A+  L  L++N C L   G     K+  +  L +  N I+D  
Sbjct: 69  LHIDNCCIGEKGAKKIGAMQQLRTLSINGCGLGKKGVASVCKLKDMTKLGIRKNHISDSL 128

Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
            + +  +T L  L+     IG EG  +++ + NLK L L    +G  G++++SG+  L S
Sbjct: 129 ALEISQMTKLTELDAGVNDIGPEGAKSISQMTNLKTLLLDFNDIGKEGVKYISGMKQLIS 188

Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
           +N+S   I D  ++ ++ + +L  L++ +  I D G   ++ ++ LT LD+    +T  G
Sbjct: 189 LNISENDIRDKGVKSISEMKNLTCLSVRSNSIGDEGAKYISEMSNLTQLDISCNVLTQKG 248

Query: 389 AAYLR 393
              L+
Sbjct: 249 IKLLQ 253



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 99/200 (49%), Gaps = 3/200 (1%)

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 329
           +K L  L+SL + S  I  E L +  G L  L  L +SD   +G+ G+  +  L  L  +
Sbjct: 10  MKKLNQLKSLKIRSKFIFGEDLRSYIGELKQLNSLNISDCINIGNRGVNVIRELDKLTEL 69

Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
           ++    I +   +K+  +  L++L+++   +   G+A++  L  +T L +    I+DS A
Sbjct: 70  HIDNCCIGEKGAKKIGAMQQLRTLSINGCGLGKKGVASVCKLKDMTKLGIRKNHISDSLA 129

Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449
             +     L  L+     +   G K I  +++L  L L  N ++  + ++ ISG+  L+S
Sbjct: 130 LEISQMTKLTELDAGVNDIGPEGAKSISQMTNLKTLLLDFN-DIGKEGVKYISGMKQLIS 188

Query: 450 LNVSNSRITSAGLRHLNHAR 469
           LN+S + I   G++ ++  +
Sbjct: 189 LNISENDIRDKGVKSISEMK 208



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 106/231 (45%), Gaps = 31/231 (13%)

Query: 76  HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
           ++ +   L SL+ + CI I + G+  +R L  LT L    N  I  +G K    +  L  
Sbjct: 34  YIGELKQLNSLNISDCINIGNRGVNVIRELDKLTELHID-NCCIGEKGAKKIGAMQQLRT 92

Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS-------------------DMKP- 175
           L +  C     G+ ++  L  +  L I+  N I+DS                   D+ P 
Sbjct: 93  LSINGCGLGKKGVASVCKLKDMTKLGIRK-NHISDSLALEISQMTKLTELDAGVNDIGPE 151

Query: 176 ----LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
               +S +TNLK+L +  + +   G+ Y+ G+++L  LN+    +    + S+S + +L 
Sbjct: 152 GAKSISQMTNLKTLLLDFNDIGKEGVKYISGMKQLISLNISENDIRDKGVKSISEMKNLT 211

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
            L++    + D+G +  S++ +L  L++  N +T + +  L+     ESLN
Sbjct: 212 CLSVRSNSIGDEGAKYISEMSNLTQLDISCNVLTQKGIKLLQ-----ESLN 257


>gi|195150157|ref|XP_002016021.1| GL10712 [Drosophila persimilis]
 gi|194109868|gb|EDW31911.1| GL10712 [Drosophila persimilis]
          Length = 529

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 189/374 (50%), Gaps = 68/374 (18%)

Query: 7   SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
           S  +FN LV  R + +V + + R  AL+DL LG                  +L S++LSG
Sbjct: 193 SPSLFNCLV-RRGIKKVQILSLRR-ALKDLVLGV----------------PALTSLNLSG 234

Query: 67  S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
             +V D  L H    D  NL++LD + C QI+D  L    +HLR   NL +L       I
Sbjct: 235 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLENLELGGCCNI 291

Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
           T  G+   A GL  L  L+L  C  I   G+ +L G         ++LE L ++ C  ++
Sbjct: 292 TNTGLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEHLGLQDCQRLS 351

Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           D  +  ++ GLT+LKS+ +S C  VTDSG+ +L  + KL  LNL  C       D++S +
Sbjct: 352 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 404

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
           G  +        L++ G    S I SL V    F ++I+D+ L H+ +GL  L SL+L+ 
Sbjct: 405 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 449

Query: 286 CGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSL 341
           C I D+G+V +   L  L+ L +   +++   GL+ L+  LTNL++I+L   T +S   +
Sbjct: 450 CQITDQGMVKIAKSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGI 509

Query: 342 RKLAGLSSLKSLNL 355
             +  L  L+ LNL
Sbjct: 510 DIIMKLPKLQKLNL 523



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 112/352 (31%), Positives = 173/352 (49%), Gaps = 58/352 (16%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
           RG+  +  LS RR       G+ A      +G  N+  ++L      H   V+L  L   
Sbjct: 203 RGIKKVQILSLRRALKDLVLGVPALTSLNLSGCFNVADMNLG-----HAFSVDLPNL--- 254

Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           ++L++  C  ITD+ +  ++  L NL++L++  C  +T++G+  +  GL+KL  LNL  C
Sbjct: 255 KTLDLSLCKQITDTSLGRIAQHLRNLENLELGGCCNITNTGLLLIAWGLKKLRHLNLRSC 314

Query: 215 PVTA-------ACLDSLSALGSL--FYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
              +       A     +A G+L   +L L  CQ LSD+     ++ + SLK +NL F  
Sbjct: 315 WHISDQGIGHLAGFSRETAEGNLQLEHLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 374

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
            +TD  L HL  +  LE LNL SC  I D G+  LT               G SG+    
Sbjct: 375 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTE--------------GGSGI---- 416

Query: 322 GLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLD 378
                 S+++SF   ISD +L  +A GL  L+SL+L+  QITD G+  +  SL  L +L+
Sbjct: 417 -----NSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMVKIAKSLQELENLN 471

Query: 379 LFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
           +   +RITD G   L  +  NL+++++ G   L+  G+  I  L  L  LNL
Sbjct: 472 IGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 523



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 104/326 (31%), Positives = 159/326 (48%), Gaps = 55/326 (16%)

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
           G+  L SLN+  C  + D ++       L NLK+L +S C ++TD+ +  + + L+ L  
Sbjct: 223 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLEN 282

Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
           L L GC        L     L  L +LNL  C  +SD G      IG L     GF+  T
Sbjct: 283 LELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQG------IGHLA----GFSRET 332

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLT 324
            E            +L L+  G+ D             C  LSD  +G     H++ GLT
Sbjct: 333 AE-----------GNLQLEHLGLQD-------------CQRLSDEALG-----HIAQGLT 363

Query: 325 NLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-F 380
           +L+SINLSF   ++D  L+ LA +  L+ LNL +   I+D G+A LT   +G+  LD+ F
Sbjct: 364 SLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSF 423

Query: 381 GARITDSGAAYL-RNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTL 438
             +I+D    ++ +    LRSL +    +TD G VK  K L  L  LN+ Q   +TDK L
Sbjct: 424 CDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMVKIAKSLQELENLNIGQCSRITDKGL 483

Query: 439 E-LISGLTGLVSLNVSN-SRITSAGL 462
           + L   LT L ++++   ++++S G+
Sbjct: 484 QTLAEDLTNLKTIDLYGCTQLSSKGI 509



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 112/209 (53%), Gaps = 16/209 (7%)

Query: 69  VTDSGLIHLKDCS--------NLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAI 119
           ++D G+ HL   S         L+ L    C ++SD  L H+ +GL++L S++     ++
Sbjct: 317 ISDQGIGHLAGFSRETAEGNLQLEHLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSV 376

Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESLNIKWCNCITDSDMKPLS 177
           T  G+K  A +  L +L+L  C  I   G+  L +G   + SL++ +C+ I+D  +  ++
Sbjct: 377 TDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIA 436

Query: 178 -GLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSA-LGSLFYL 233
            GL  L+SL ++  ++TD G+  + K LQ+L  LN+  C  +T   L +L+  L +L  +
Sbjct: 437 QGLYRLRSLSLNQCQITDQGMVKIAKSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTI 496

Query: 234 NLNRC-QLSDDGCEKFSKIGSLKVLNLGF 261
           +L  C QLS  G +   K+  L+ LNLG 
Sbjct: 497 DLYGCTQLSSKGIDIIMKLPKLQKLNLGL 525



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 104/219 (47%), Gaps = 33/219 (15%)

Query: 274 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 324
           G+  L SLNL  C       +G    V+L  L  L    C +++DT +G    +HL  L 
Sbjct: 223 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 281

Query: 325 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-------- 372
           NLE     N++ TG+    L    GL  L+ LNL +   I+D G+  L   +        
Sbjct: 282 NLELGGCCNITNTGL----LLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNL 337

Query: 373 GLTHLDLFG-ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 428
            L HL L    R++D    ++ +   +L+S  L  C   +TD+G+KH+  +  L  LNL 
Sbjct: 338 QLEHLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 396

Query: 429 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL 465
              N++D  +  L  G +G+ SL+VS   +I+   L H+
Sbjct: 397 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHI 435


>gi|149175123|ref|ZP_01853746.1| hypothetical protein PM8797T_25626 [Planctomyces maris DSM 8797]
 gi|148846101|gb|EDL60441.1| hypothetical protein PM8797T_25626 [Planctomyces maris DSM 8797]
          Length = 1079

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 7/234 (2%)

Query: 239 QLSDDGCEKF------SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           QL+ +G  +F      +K GS +++ L    +T E L  L+    L+ L +    +GDE 
Sbjct: 36  QLAVEGLRRFCTNLQTNKDGSARLVRLSKPHVTLEALNQLEQFPRLDYLAMVCPHLGDEA 95

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
           L+ +  L NL  L LS++ VG SGL  L  L  LE + L  T ++D  L+ L+ L  LK 
Sbjct: 96  LLYIRDLTNLDTLMLSESAVGDSGLSCLKKLNKLERLYLDNTKVTDAGLQHLSSLKQLKV 155

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
           L+L    +TD G+  L  L  L  L L G +++D+G   L   K L+ L +    +T + 
Sbjct: 156 LSLRNLNVTDQGMQTLADLNNLEVLFLSGTQVSDAGLKSLTELKQLKILYLARTAITGSQ 215

Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
           +  +  L SL  L+L++   L    ++ +SGLT L  L +  + +  + ++ L 
Sbjct: 216 LSALNTLESLEHLSLNR-TKLQPVVVDALSGLTQLKGLEIQYTGLGESSIQQLK 268



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 100/210 (47%)

Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
           L+ L    VT   L+ L     L YL +    L D+       + +L  L L  + + D 
Sbjct: 59  LVRLSKPHVTLEALNQLEQFPRLDYLAMVCPHLGDEALLYIRDLTNLDTLMLSESAVGDS 118

Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
            L  LK L  LE L LD+  + D GL +L+ L  LK L L +  V   G++ L+ L NLE
Sbjct: 119 GLSCLKKLNKLERLYLDNTKVTDAGLQHLSSLKQLKVLSLRNLNVTDQGMQTLADLNNLE 178

Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
            + LS T +SD  L+ L  L  LK L L    IT + L+AL +L  L HL L   ++   
Sbjct: 179 VLFLSGTQVSDAGLKSLTELKQLKILYLARTAITGSQLSALNTLESLEHLSLNRTKLQPV 238

Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
               L     L+ LEI   GL ++ ++ +K
Sbjct: 239 VVDALSGLTQLKGLEIQYTGLGESSIQQLK 268



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 118/244 (48%), Gaps = 5/244 (2%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN---- 161
             +  +  R    +  +G++ F   +   K    R  R+    V L+ L +LE       
Sbjct: 24  EKVAPVEARTPEQLAVEGLRRFCTNLQTNKDGSARLVRLSKPHVTLEALNQLEQFPRLDY 83

Query: 162 -IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
               C  + D  +  +  LTNL +L +S S V DSG++ LK L KL  L L+   VT A 
Sbjct: 84  LAMVCPHLGDEALLYIRDLTNLDTLMLSESAVGDSGLSCLKKLNKLERLYLDNTKVTDAG 143

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
           L  LS+L  L  L+L    ++D G +  + + +L+VL L   +++D  L  L  L  L+ 
Sbjct: 144 LQHLSSLKQLKVLSLRNLNVTDQGMQTLADLNNLEVLFLSGTQVSDAGLKSLTELKQLKI 203

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           L L    I    L  L  L +L+ L L+ T++    +  LSGLT L+ + + +TG+ + S
Sbjct: 204 LYLARTAITGSQLSALNTLESLEHLSLNRTKLQPVVVDALSGLTQLKGLEIQYTGLGESS 263

Query: 341 LRKL 344
           +++L
Sbjct: 264 IQQL 267



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 103/201 (51%)

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
           GS   + L++  ++ +   +  +   L  L +    + DE L++++ LTNL++L L    
Sbjct: 55  GSARLVRLSKPHVTLEALNQLEQFPRLDYLAMVCPHLGDEALLYIRDLTNLDTLMLSESA 114

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           +GD GL  L  L  L+ L L +T+V  +GL+HLS L  L+ ++L    ++D  ++ LA L
Sbjct: 115 VGDSGLSCLKKLNKLERLYLDNTKVTDAGLQHLSSLKQLKVLSLRNLNVTDQGMQTLADL 174

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
           ++L+ L L   Q++D GL +LT L  L  L L    IT S  + L   ++L  L +    
Sbjct: 175 NNLEVLFLSGTQVSDAGLKSLTELKQLKILYLARTAITGSQLSALNTLESLEHLSLNRTK 234

Query: 408 LTDAGVKHIKDLSSLTLLNLS 428
           L    V  +  L+ L  L + 
Sbjct: 235 LQPVVVDALSGLTQLKGLEIQ 255



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 117/228 (51%), Gaps = 6/228 (2%)

Query: 56  GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
           GS+ L V LS   VT   L  L+    L  L    C  + D  L ++R L+NL +L    
Sbjct: 55  GSARL-VRLSKPHVTLEALNQLEQFPRLDYLAM-VCPHLGDEALLYIRDLTNLDTLMLS- 111

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
            +A+   G+     L  L +L L+       GL +L  L +L+ L+++  N +TD  M+ 
Sbjct: 112 ESAVGDSGLSCLKKLNKLERLYLDNTKVTDAGLQHLSSLKQLKVLSLRNLN-VTDQGMQT 170

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           L+ L NL+ L +S ++V+D+G+  L  L++L +L L    +T + L +L+ L SL +L+L
Sbjct: 171 LADLNNLEVLFLSGTQVSDAGLKSLTELKQLKILYLARTAITGSQLSALNTLESLEHLSL 230

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           NR +L     +  S +  LK L + +  + +  +  LK   NLE  N+
Sbjct: 231 NRTKLQPVVVDALSGLTQLKGLEIQYTGLGESSIQQLK--RNLEKTNI 276



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 11/166 (6%)

Query: 308 SDTQVGSSGLRHLSGLTNLES--------INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
           +  Q+   GLR     TNL++        + LS   ++  +L +L     L  L +    
Sbjct: 33  TPEQLAVEGLRRFC--TNLQTNKDGSARLVRLSKPHVTLEALNQLEQFPRLDYLAMVCPH 90

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
           + D  L  +  LT L  L L  + + DSG + L+    L  L +    +TDAG++H+  L
Sbjct: 91  LGDEALLYIRDLTNLDTLMLSESAVGDSGLSCLKKLNKLERLYLDNTKVTDAGLQHLSSL 150

Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
             L +L+L +N N+TD+ ++ ++ L  L  L +S ++++ AGL+ L
Sbjct: 151 KQLKVLSL-RNLNVTDQGMQTLADLNNLEVLFLSGTQVSDAGLKSL 195


>gi|290984372|ref|XP_002674901.1| predicted protein [Naegleria gruberi]
 gi|284088494|gb|EFC42157.1| predicted protein [Naegleria gruberi]
          Length = 599

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 106/422 (25%), Positives = 184/422 (43%), Gaps = 50/422 (11%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+   L S+++  + +   G  H+     L  LD N  + I + G+E +  +  LT L  
Sbjct: 167 SKLKELTSLEIGDNHLKSEGAAHIAQMRKLTFLDINTNM-IGNEGIELISRMEQLTDLDV 225

Query: 114 RRNNAITAQGMKAFAGLINLVKLDL-----------------------ERCTRI-HGGLV 149
             NN I ++G+K+   + +L  L++                         C  I   G  
Sbjct: 226 MDNN-IRSEGVKSLCKMKHLTNLNIGNNPIEDEGAILLGEMKQLKNLITACNNIGMKGFS 284

Query: 150 NLKGLMKLESLNI-----KWCNCITDSD----------------MKPLSGLTNLKSLQIS 188
           +L  L+ LESL I     K  + I + +                  P+S L+NL  L I 
Sbjct: 285 SLSTLLNLESLVILGLDGKSTDFIREMNQLTRLEFYGSNLEPKGFDPISHLSNLTFLTIR 344

Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
              + D  +  +   +KLT LN+  C +      S+  L +L +L+L+  ++  +  E  
Sbjct: 345 GRNIADGDLECIGQFKKLTTLNVPSCNINQG-FKSICGLKNLTFLDLSYNKI--ESVESI 401

Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
           + + SL  L++  N I  E    +  L NL +L +    I DEG+  L+ +  L  L ++
Sbjct: 402 TNLKSLTQLDINGNRIGHEGAKSISQLDNLTNLQIGHNLIQDEGIKYLSTMQCLTTLGVA 461

Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
           + Q+   G + +S    L S++L+   I     + L+ L++L  L +   +I D G   +
Sbjct: 462 ENQISIEGAKFISKSHQLTSLDLTNNVIETEGAKILSELNNLTGLFVYGNRIRDEGAKYI 521

Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
           +++  LT LD+    ITD GA  + N   L +L I    + D G K I  +  LT+L++ 
Sbjct: 522 STMQQLTILDIAYNEITDEGAKAISNLDQLSTLYIYSNEICDEGAKSICGMKQLTILDID 581

Query: 429 QN 430
            N
Sbjct: 582 YN 583



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 131/273 (47%), Gaps = 3/273 (1%)

Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
           L+IS  ++    + ++  +++LT L++    +      ++S L  L  LN+ + ++  +G
Sbjct: 103 LEISYCRLEAEDVNFIGEMKQLTELDISLNNINCKGAITISQLSKLTKLNVYQTKMGVEG 162

Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
            ++ SK+  L  L +G N +  E   H+  +  L  L++++  IG+EG+  ++ +  L  
Sbjct: 163 AKELSKLKELTSLEIGDNHLKSEGAAHIAQMRKLTFLDINTNMIGNEGIELISRMEQLTD 222

Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
           L++ D  + S G++ L  + +L ++N+    I D     L  +  LK+L      I   G
Sbjct: 223 LDVMDNNIRSEGVKSLCKMKHLTNLNIGNNPIEDEGAILLGEMKQLKNLITACNNIGMKG 282

Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
            ++L++L  L  L + G  +      ++R    L  LE  G  L   G   I  LS+LT 
Sbjct: 283 FSSLSTLLNLESLVILG--LDGKSTDFIREMNQLTRLEFYGSNLEPKGFDPISHLSNLTF 340

Query: 425 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
           L + +  N+ D  LE I     L +LNV +  I
Sbjct: 341 LTI-RGRNIADGDLECIGQFKKLTTLNVPSCNI 372



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 132/294 (44%), Gaps = 41/294 (13%)

Query: 43  GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
           G++ K  D I  + + L  ++  GS++   G   +   SNL  L       I+DG LE +
Sbjct: 299 GLDGKSTDFI-REMNQLTRLEFYGSNLEPKGFDPISHLSNLTFLTIR-GRNIADGDLECI 356

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLESL 160
                LT+L+    N    QG K+  GL NL  LDL    +I     + NLK L +L+ +
Sbjct: 357 GQFKKLTTLNVPSCN--INQGFKSICGLKNLTFLDLSY-NKIESVESITNLKSLTQLD-I 412

Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL-------NLEG 213
           N    N I     K +S L NL +LQI  + + D GI YL  +Q LT L       ++EG
Sbjct: 413 N---GNRIGHEGAKSISQLDNLTNLQIGHNLIQDEGIKYLSTMQCLTTLGVAENQISIEG 469

Query: 214 CPVT--------------------AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
                                   A  L  L+ L  LF    NR  + D+G +  S +  
Sbjct: 470 AKFISKSHQLTSLDLTNNVIETEGAKILSELNNLTGLFVYG-NR--IRDEGAKYISTMQQ 526

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
           L +L++ +NEITDE    +  L  L +L + S  I DEG  ++ G+  L  L++
Sbjct: 527 LTILDIAYNEITDEGAKAISNLDQLSTLYIYSNEICDEGAKSICGMKQLTILDI 580



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 94/216 (43%), Gaps = 27/216 (12%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           SL  +D++G+ +   G   +    NL +L     + I D G+++L  +  LT+L    N 
Sbjct: 406 SLTQLDINGNRIGHEGAKSISQLDNLTNLQIGHNL-IQDEGIKYLSTMQCLTTLGVAEN- 463

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
            I+ +G K  +    L  LDL                           N I     K LS
Sbjct: 464 QISIEGAKFISKSHQLTSLDLTN-------------------------NVIETEGAKILS 498

Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
            L NL  L +  +++ D G  Y+  +Q+LT+L++    +T     ++S L  L  L +  
Sbjct: 499 ELNNLTGLFVYGNRIRDEGAKYISTMQQLTILDIAYNEITDEGAKAISNLDQLSTLYIYS 558

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
            ++ D+G +    +  L +L++ +N +++E    L+
Sbjct: 559 NEICDEGAKSICGMKQLTILDIDYNVLSEEVSNQLR 594


>gi|320165720|gb|EFW42619.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 664

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 158/373 (42%), Gaps = 11/373 (2%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
           QI+        GL+ L  L +  NN I    + AF+GL  LV+L L   + T I      
Sbjct: 166 QITTVPSSAFTGLTAL-QLLYLYNNQIATVAIDAFSGLTALVQLYLYNNQITSISANA-- 222

Query: 151 LKGLMKLESL--NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
             GL KL +L  N  W + I  S     +GLT L  L +  +++T    +   GL  L  
Sbjct: 223 FSGLSKLNTLQLNNNWLSAIPSSAF---TGLTALTQLLLYNNQITTVPSSAFTGLTALQF 279

Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
           L L    +    +++ S L +L  L L+  Q++      FS +  L  L+L  N ++   
Sbjct: 280 LYLYNNQIATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIP 339

Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
                GLT L  L LD+  I        +GL  L  L L + Q+ +      SGLT L  
Sbjct: 340 SSAFTGLTALTQLRLDTNQITTVPANAFSGLTALIYLYLYNNQITTVPANAFSGLTALVQ 399

Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
           + L    I+      L GLS+L  L L   QIT       + LT LT L LF   IT   
Sbjct: 400 LYLYNNQITTIPSSALTGLSALTQLYLYNNQITSVPANGFSGLTALTDLRLFNNTITSIL 459

Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
           A        L  L++    LT         L++LT L L  N  L+       +GLT L+
Sbjct: 460 ANAFTGLTKLTYLDLSLNQLTSIPAGAFSGLTALTQLLLYNNW-LSAVPSSAFTGLTALL 518

Query: 449 SLNVSNSRITSAG 461
            L + N++IT+  
Sbjct: 519 YLYLYNNQITTVA 531



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 153/371 (41%), Gaps = 34/371 (9%)

Query: 117 NAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSD 172
           N IT     AF+GL  L  LDL   + T +        GL KL +L +   W + I  S 
Sbjct: 93  NPITNIASSAFSGLSVLNTLDLTNNQITTVPANA--FSGLSKLNTLYLYNNWLSAIPSSA 150

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
               +GLT L  L +  +++T    +   GL  L LL L    +    +D+ S L +L  
Sbjct: 151 F---TGLTALTQLLLHNNQITTVPSSAFTGLTALQLLYLYNNQIATVAIDAFSGLTALVQ 207

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           L L   Q++      FS +  L  L L  N ++        GLT L  L L +  I    
Sbjct: 208 LYLYNNQITSISANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVP 267

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-----------SFTGISD-GS 340
               TGL  L+ L L + Q+ +  +   SGLT L  + L           +F+G+S   +
Sbjct: 268 SSAFTGLTALQFLYLYNNQIATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNT 327

Query: 341 LR------------KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
           L                GL++L  L LD  QIT     A + LT L +L L+  +IT   
Sbjct: 328 LHLYNNWLSAIPSSAFTGLTALTQLRLDTNQITTVPANAFSGLTALIYLYLYNNQITTVP 387

Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
           A        L  L +    +T      +  LS+LT L L  N  +T       SGLT L 
Sbjct: 388 ANAFSGLTALVQLYLYNNQITTIPSSALTGLSALTQLYLYNN-QITSVPANGFSGLTALT 446

Query: 449 SLNVSNSRITS 459
            L + N+ ITS
Sbjct: 447 DLRLFNNTITS 457



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 128/475 (26%), Positives = 191/475 (40%), Gaps = 61/475 (12%)

Query: 15  VYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSG 73
           +Y+  +T +S  AF   + L  L L      N+ W+  I S          +G       
Sbjct: 210 LYNNQITSISANAFSGLSKLNTLQL------NNNWLSAIPSSA-------FTGLTALTQL 256

Query: 74  LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
           L++    + + S  F         GL  L+ L       +  NN I    + AF+GL  L
Sbjct: 257 LLYNNQITTVPSSAFT--------GLTALQFL-------YLYNNQIATVAINAFSGLTAL 301

Query: 134 V--KLDLERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISC 189
           V  +LD  + T +        GL KL +L++   W + I  S     +GLT L  L++  
Sbjct: 302 VQLRLDTNQITTVPANA--FSGLSKLNTLHLYNNWLSAIPSSAF---TGLTALTQLRLDT 356

Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
           +++T        GL  L  L L    +T    ++ S L +L  L L   Q++       +
Sbjct: 357 NQITTVPANAFSGLTALIYLYLYNNQITTVPANAFSGLTALVQLYLYNNQITTIPSSALT 416

Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
            + +L  L L  N+IT        GLT L  L L +  I        TGL  L  L+LS 
Sbjct: 417 GLSALTQLYLYNNQITSVPANGFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLDLSL 476

Query: 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369
            Q+ S      SGLT L  + L    +S        GL++L  L L   QIT     A T
Sbjct: 477 NQLTSIPAGAFSGLTALTQLLLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAFT 536

Query: 370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 429
            LT L  L L+G +IT   A+      +L  L +    +T   V     L+ L+LL LS 
Sbjct: 537 GLTALVQLQLYGNQITTISASAFAGMSSLVQLYLYSNRITAIFVNAFTGLTHLSLLELSN 596

Query: 430 N------------------CNLTDKTLELI-----SGLTGLVSLNVSNSRITSAG 461
           N                   +L + +L  +     +GLT L +L + N++ITS  
Sbjct: 597 NQITSLPANAFSGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALLLYNNQITSVA 651



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 151/358 (42%), Gaps = 7/358 (1%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL--VKLDLERCTRIHGGLVN 150
           QI+        GLS L +L    NN ++A    AF GL  L  ++LD  + T +      
Sbjct: 310 QITTVPANAFSGLSKLNTLHLY-NNWLSAIPSSAFTGLTALTQLRLDTNQITTVPANA-- 366

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
             GL  L  L + + N IT       SGLT L  L +  +++T    + L GL  LT L 
Sbjct: 367 FSGLTALIYLYL-YNNQITTVPANAFSGLTALVQLYLYNNQITTIPSSALTGLSALTQLY 425

Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
           L    +T+   +  S L +L  L L    ++      F+ +  L  L+L  N++T     
Sbjct: 426 LYNNQITSVPANGFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLDLSLNQLTSIPAG 485

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
              GLT L  L L +  +        TGL  L  L L + Q+ +      +GLT L  + 
Sbjct: 486 AFSGLTALTQLLLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAFTGLTALVQLQ 545

Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
           L    I+  S    AG+SSL  L L + +IT   + A T LT L+ L+L   +IT   A 
Sbjct: 546 LYGNQITTISASAFAGMSSLVQLYLYSNRITAIFVNAFTGLTHLSLLELSNNQITSLPAN 605

Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
                  +  L +    L+         L++L  L L  N  +T       +GLT LV
Sbjct: 606 AFSGLTAMTQLSLYNNSLSAVPSSAFTGLTALQAL-LLYNNQITSVAANAFTGLTALV 662



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 139/334 (41%), Gaps = 34/334 (10%)

Query: 67  SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
           S +  S    L   + L+ LD N   QI+        GL+ L  L +  NN IT     A
Sbjct: 336 SAIPSSAFTGLTALTQLR-LDTN---QITTVPANAFSGLTALIYL-YLYNNQITTVPANA 390

Query: 127 FAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           F+GL  LV+L L   + T I      L GL  L  L + + N IT       SGLT L  
Sbjct: 391 FSGLTALVQLYLYNNQITTIPSSA--LTGLSALTQLYL-YNNQITSVPANGFSGLTALTD 447

Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNL---EGCPVTAACLDSLSALGSLFYLN------- 234
           L++  + +T        GL KLT L+L   +   + A     L+AL  L   N       
Sbjct: 448 LRLFNNTITSILANAFTGLTKLTYLDLSLNQLTSIPAGAFSGLTALTQLLLYNNWLSAVP 507

Query: 235 --------------LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
                         L   Q++      F+ + +L  L L  N+IT        G+++L  
Sbjct: 508 SSAFTGLTALLYLYLYNNQITTVAANAFTGLTALVQLQLYGNQITTISASAFAGMSSLVQ 567

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           L L S  I    +   TGL +L  LELS+ Q+ S      SGLT +  ++L    +S   
Sbjct: 568 LYLYSNRITAIFVNAFTGLTHLSLLELSNNQITSLPANAFSGLTAMTQLSLYNNSLSAVP 627

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
                GL++L++L L   QIT     A T LT L
Sbjct: 628 SSAFTGLTALQALLLYNNQITSVAANAFTGLTAL 661


>gi|51850103|dbj|BAD42392.1| leucine-rich repeat protein [Ralstonia solanacearum]
          Length = 621

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 145/472 (30%), Positives = 206/472 (43%), Gaps = 24/472 (5%)

Query: 2   LPRDISQQI--FNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSL 59
           LP ++ QQI         R + EVSLE  R+ +   +    +  ++D  M    S   +L
Sbjct: 89  LPPELWQQIATLAGARPRRAMREVSLE-LRNASRAVVT---HLTISDPAMFRQLSLYPAL 144

Query: 60  LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI--QISDGGLEHLRGLSNLTSLSFRRNN 117
            SV   G+ +T   L  L     L+ L+   C    IS  GL HL  +  L SL+     
Sbjct: 145 KSVRFKGA-LTLEALKALPPT--LEHLEIGRCTGSAISAEGLAHLAAMP-LKSLNLN-GI 199

Query: 118 AITAQGMKAFAGLINLVKLDLERC---TRIHGGLVNLKGLMKLE-SLNIKWCNCITDSDM 173
            I  +G +  A   +LV L L  C    R    L   + +  L+ S+N+  C+       
Sbjct: 200 EIGVEGARTLATSKSLVSLSLIGCGIGDRAAQALAASRSIRSLDLSVNMIGCDGAQALAD 259

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
            PL       SL +  +++ D G   L   Q LT L L    +  A   + +    L  L
Sbjct: 260 APLV------SLNLYSNEIGDDGARALATSQTLTSLELRRNGIGNAGAGAFANNTVLRKL 313

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           NL    +   G    +   SL  L+LG N + D+    L G  +L SL +D   I DEG+
Sbjct: 314 NLANNMIDKRGARVLAGNTSLTELDLGGNRLGDKGARALAGNRSLLSLKVDHNEISDEGV 373

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
             L     L+ L+LS   VG  G   L G T L  +NLS  GI+  S   LA   SL SL
Sbjct: 374 QALAQHATLRSLDLSFNFVGLQGAGALGGNTRLSELNLSLCGINSYSASALARNKSLASL 433

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
            L+  +I D G  AL   + LT LDL    I ++GA  L   + L SL++ G G+ D G 
Sbjct: 434 YLNGNRIGDDGARALAKNSTLTLLDLSRNNIQNAGAEALGGNQALISLKLAGNGIDDDGA 493

Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
             +     LT L+LSQN   ++    L    T L  L++S +RI   G + L
Sbjct: 494 AALARHPRLTTLDLSQNRIGSEGARHLAQSAT-LAELDLSENRIGPEGAKAL 544



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 116/423 (27%), Positives = 173/423 (40%), Gaps = 54/423 (12%)

Query: 43  GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
           G+ D+    +A+   S+ S+DLS + +   G   L D   L SL+  +  +I D G   L
Sbjct: 224 GIGDRAAQALAAS-RSIRSLDLSVNMIGCDGAQALADAP-LVSLNL-YSNEIGDDGARAL 280

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
                LTSL  RRN  I   G  AFA    L KL+L                        
Sbjct: 281 ATSQTLTSLELRRN-GIGNAGAGAFANNTVLRKLNLAN---------------------- 317

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
              N I     + L+G T+L  L +  +++ D G   L G +                  
Sbjct: 318 ---NMIDKRGARVLAGNTSLTELDLGGNRLGDKGARALAGNR------------------ 356

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
                 SL  L ++  ++SD+G +  ++  +L+ L+L FN +  +    L G T L  LN
Sbjct: 357 ------SLLSLKVDHNEISDEGVQALAQHATLRSLDLSFNFVGLQGAGALGGNTRLSELN 410

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
           L  CGI       L    +L  L L+  ++G  G R L+  + L  ++LS   I +    
Sbjct: 411 LSLCGINSYSASALARNKSLASLYLNGNRIGDDGARALAKNSTLTLLDLSRNNIQNAGAE 470

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
            L G  +L SL L    I D G AAL     LT LDL   RI   GA +L     L  L+
Sbjct: 471 ALGGNQALISLKLAGNGIDDDGAAALARHPRLTTLDLSQNRIGSEGARHLAQSATLAELD 530

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
           +    +   G K +   + LT L +  N  + +     ++  T L SL+   + I  AG 
Sbjct: 531 LSENRIGPEGAKALSLSTVLTTLKVIDNA-IGEDGARALADSTSLTSLDARRNGIGEAGA 589

Query: 463 RHL 465
           + L
Sbjct: 590 QVL 592


>gi|406830031|ref|ZP_11089625.1| leucine-rich repeat-containing protein [Schlesneria paludicola DSM
           18645]
          Length = 306

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 115/238 (48%), Gaps = 8/238 (3%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           + +TD   K L+    L +L ++ S + D+ +  +  L +L  L L+   VT A L S+S
Sbjct: 59  HSMTDDAAKQLTAFPALTTLALTDSPIGDAHMGVIGALTQLESLALDHTQVTDAGLQSIS 118

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
           +L  L  LNL  C ++D G    + +  L  LNL   +I    LV+L  L  LE+L L +
Sbjct: 119 SLEHLRELNLAGCSVTDGGLGSLAGLTELTSLNLNDTQINGLGLVYLSKLNRLEALYLQN 178

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
             +  E +  L+GL +LK L L+ T+ G   +R ++GL +LE + L+ T I D  +  LA
Sbjct: 179 TVVDFESIPPLSGLESLKILHLAGTKTGGGIVRAITGLPSLERLYLNGTSIKDEDIPALA 238

Query: 346 GL-----SSLKSLNLDARQITDTGLAALTSLTGLTHLDLF---GARITDSGAAYLRNF 395
            +        K L ++   ++D  L  +  L  L    L    G ++T  G   LR  
Sbjct: 239 AVLAQNCPHFKGLFVEKTALSDAALEPMHPLADLKEFTLIHVHGTKVTKDGVVRLRKL 296



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 115/243 (47%), Gaps = 8/243 (3%)

Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
           + +S   +TD     L     LT L L   P+  A +  + AL  L  L L+  Q++D G
Sbjct: 54  VSLSSHSMTDDAAKQLTAFPALTTLALTDSPIGDAHMGVIGALTQLESLALDHTQVTDAG 113

Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
            +  S +  L+ LNL    +TD  L  L GLT L SLNL+   I   GLV L+ L  L+ 
Sbjct: 114 LQSISSLEHLRELNLAGCSVTDGGLGSLAGLTELTSLNLNDTQINGLGLVYLSKLNRLEA 173

Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
           L L +T V    +  LSGL +L+ ++L+ T    G +R + GL SL+ L L+   I D  
Sbjct: 174 LYLQNTVVDFESIPPLSGLESLKILHLAGTKTGGGIVRAITGLPSLERLYLNGTSIKDED 233

Query: 365 LAALTSLTGL--THLD-LFGARITDSGAA-----YLRNFKNLRSLEICGGGLTDAGVKHI 416
           + AL ++      H   LF  +   S AA      L + K    + + G  +T  GV  +
Sbjct: 234 IPALAAVLAQNCPHFKGLFVEKTALSDAALEPMHPLADLKEFTLIHVHGTKVTKDGVVRL 293

Query: 417 KDL 419
           + L
Sbjct: 294 RKL 296



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 83/172 (48%)

Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
           V++L  + +TD+    L     L +L L    IGD  +  +  L  L+ L L  TQV  +
Sbjct: 53  VVSLSSHSMTDDAAKQLTAFPALTTLALTDSPIGDAHMGVIGALTQLESLALDHTQVTDA 112

Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
           GL+ +S L +L  +NL+   ++DG L  LAGL+ L SLNL+  QI   GL  L+ L  L 
Sbjct: 113 GLQSISSLEHLRELNLAGCSVTDGGLGSLAGLTELTSLNLNDTQINGLGLVYLSKLNRLE 172

Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
            L L    +       L   ++L+ L + G       V+ I  L SL  L L
Sbjct: 173 ALYLQNTVVDFESIPPLSGLESLKILHLAGTKTGGGIVRAITGLPSLERLYL 224



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 121/261 (46%), Gaps = 43/261 (16%)

Query: 25  LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
           L AF   AL  L L   P + D  M VI +  + L S+ L  + VTD+GL  +    +L+
Sbjct: 69  LTAFP--ALTTLALTDSP-IGDAHMGVIGAL-TQLESLALDHTQVTDAGLQSISSLEHLR 124

Query: 85  SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
            L+   C  ++DGGL  L GL+ LTSL+                             T+I
Sbjct: 125 ELNLAGC-SVTDGGLGSLAGLTELTSLNLND--------------------------TQI 157

Query: 145 HG-GLVNLKGLMKLESLNIKWCNCITDSD-MKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
           +G GLV L  L +LE+L ++  N + D + + PLSGL +LK L ++ +K     +  + G
Sbjct: 158 NGLGLVYLSKLNRLEALYLQ--NTVVDFESIPPLSGLESLKILHLAGTKTGGGIVRAITG 215

Query: 203 LQKLTLLNLEGCPVTAACLDSLSAL-----GSLFYLNLNRCQLSDDGCEKFSKIGSLK-- 255
           L  L  L L G  +    + +L+A+          L + +  LSD   E    +  LK  
Sbjct: 216 LPSLERLYLNGTSIKDEDIPALAAVLAQNCPHFKGLFVEKTALSDAALEPMHPLADLKEF 275

Query: 256 -VLNLGFNEITDECLVHLKGL 275
            ++++   ++T + +V L+ L
Sbjct: 276 TLIHVHGTKVTKDGVVRLRKL 296



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 100/227 (44%), Gaps = 8/227 (3%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           V LS   +TD     L     L +L       I D  +  +  L+ L SL+      +T 
Sbjct: 54  VSLSSHSMTDDAAKQLTAFPALTTLALTDS-PIGDAHMGVIGALTQLESLALDHTQ-VTD 111

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
            G+++ + L +L +L+L  C+   GGL +L GL +L SLN+     I    +  LS L  
Sbjct: 112 AGLQSISSLEHLRELNLAGCSVTDGGLGSLAGLTELTSLNLNDTQ-INGLGLVYLSKLNR 170

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
           L++L +  + V    I  L GL+ L +L+L G       + +++ L SL  L LN   + 
Sbjct: 171 LEALYLQNTVVDFESIPPLSGLESLKILHLAGTKTGGGIVRAITGLPSLERLYLNGTSIK 230

Query: 242 DDGCEKFSKI-----GSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           D+     + +        K L +    ++D  L  +  L +L+   L
Sbjct: 231 DEDIPALAAVLAQNCPHFKGLFVEKTALSDAALEPMHPLADLKEFTL 277



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 1/114 (0%)

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
           ++L +  +TD     LT+   LT L L  + I D+    +     L SL +    +TDAG
Sbjct: 54  VSLSSHSMTDDAAKQLTAFPALTTLALTDSPIGDAHMGVIGALTQLESLALDHTQVTDAG 113

Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
           ++ I  L  L  LNL+  C++TD  L  ++GLT L SLN+++++I   GL +L+
Sbjct: 114 LQSISSLEHLRELNLA-GCSVTDGGLGSLAGLTELTSLNLNDTQINGLGLVYLS 166


>gi|291000432|ref|XP_002682783.1| predicted protein [Naegleria gruberi]
 gi|284096411|gb|EFC50039.1| predicted protein [Naegleria gruberi]
          Length = 303

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 99/182 (54%)

Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
           S++  LK L +  N I DE    +  +  L SL++    IGDEG  +++ +  L  L++S
Sbjct: 115 SEMKQLKSLTIDENGIGDEGAKFISEMKQLTSLSVYYNQIGDEGAKSISEMNQLTSLDIS 174

Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
             Q+G  G + +  +  L S+++ F  I +   + ++G++ L SL++   +I D G  ++
Sbjct: 175 GNQIGDEGAKSIIEVKQLTSLDIYFNQIGEEGAKFISGMNQLTSLDISGNRIGDEGAKSI 234

Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
           + +  LT L+++  RI D GA  + + K L+SL I G  + D   K I ++  LT L++S
Sbjct: 235 SGMNQLTSLNVYNNRIGDEGAKSIIDMKQLKSLNIGGNRIGDEEAKSISEMKQLTSLDIS 294

Query: 429 QN 430
            N
Sbjct: 295 NN 296



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 103/206 (50%), Gaps = 6/206 (2%)

Query: 211 LEGCPVTAACLDSL------SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
           +E    +   LDS+      S +  L  L ++   + D+G +  S++  L  L++ +N+I
Sbjct: 95  IENVKFSRRLLDSIEQAKFISEMKQLKSLTIDENGIGDEGAKFISEMKQLTSLSVYYNQI 154

Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
            DE    +  +  L SL++    IGDEG  ++  +  L  L++   Q+G  G + +SG+ 
Sbjct: 155 GDEGAKSISEMNQLTSLDISGNQIGDEGAKSIIEVKQLTSLDIYFNQIGEEGAKFISGMN 214

Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
            L S+++S   I D   + ++G++ L SLN+   +I D G  ++  +  L  L++ G RI
Sbjct: 215 QLTSLDISGNRIGDEGAKSISGMNQLTSLNVYNNRIGDEGAKSIIDMKQLKSLNIGGNRI 274

Query: 385 TDSGAAYLRNFKNLRSLEICGGGLTD 410
            D  A  +   K L SL+I    + D
Sbjct: 275 GDEEAKSISEMKQLTSLDISNNRIGD 300



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 26/231 (11%)

Query: 161 NIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
           N+K+   + DS    K +S +  LKSL I  + + D G  ++  +++LT L         
Sbjct: 97  NVKFSRRLLDSIEQAKFISEMKQLKSLTIDENGIGDEGAKFISEMKQLTSL--------- 147

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
                     S++Y      Q+ D+G +  S++  L  L++  N+I DE    +  +  L
Sbjct: 148 ----------SVYY-----NQIGDEGAKSISEMNQLTSLDISGNQIGDEGAKSIIEVKQL 192

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            SL++    IG+EG   ++G+  L  L++S  ++G  G + +SG+  L S+N+    I D
Sbjct: 193 TSLDIYFNQIGEEGAKFISGMNQLTSLDISGNRIGDEGAKSISGMNQLTSLNVYNNRIGD 252

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
              + +  +  LKSLN+   +I D    +++ +  LT LD+   RI D  A
Sbjct: 253 EGAKSIIDMKQLKSLNIGGNRIGDEEAKSISEMKQLTSLDISNNRIGDEEA 303



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 81/148 (54%), Gaps = 1/148 (0%)

Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
           + +S +  L+S+ +   GI D   + ++ +  L SL++   QI D G  +++ +  LT L
Sbjct: 112 KFISEMKQLKSLTIDENGIGDEGAKFISEMKQLTSLSVYYNQIGDEGAKSISEMNQLTSL 171

Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
           D+ G +I D GA  +   K L SL+I    + + G K I  ++ LT L++S N  + D+ 
Sbjct: 172 DISGNQIGDEGAKSIIEVKQLTSLDIYFNQIGEEGAKFISGMNQLTSLDISGN-RIGDEG 230

Query: 438 LELISGLTGLVSLNVSNSRITSAGLRHL 465
            + ISG+  L SLNV N+RI   G + +
Sbjct: 231 AKSISGMNQLTSLNVYNNRIGDEGAKSI 258



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 4/154 (2%)

Query: 41  YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
           Y  + D+    I S+ + L S+D+SG+ + D G   + +   L SLD  F  QI + G +
Sbjct: 151 YNQIGDEGAKSI-SEMNQLTSLDISGNQIGDEGAKSIIEVKQLTSLDIYFN-QIGEEGAK 208

Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
            + G++ LTSL     N I  +G K+ +G+  L  L++        G  ++  + +L+SL
Sbjct: 209 FISGMNQLTSLDI-SGNRIGDEGAKSISGMNQLTSLNVYNNRIGDEGAKSIIDMKQLKSL 267

Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
           NI   N I D + K +S +  L SL IS +++ D
Sbjct: 268 NI-GGNRIGDEEAKSISEMKQLTSLDISNNRIGD 300


>gi|18378037|emb|CAD21749.1| hypothetical leucine-rich repeat protein 1, LRRP1 [Trypanosoma
            brucei]
          Length = 1394

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 130/491 (26%), Positives = 209/491 (42%), Gaps = 81/491 (16%)

Query: 32   ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
            AL +L L    G+N  W  +   Q   L    L  + +TD  + H  +C NL +LD +FC
Sbjct: 556  ALNELNLSNCFGINAGWEAIEKLQ--QLHVAILPNTHITDRDISHFSNCKNLVTLDLSFC 613

Query: 92   IQISDGGLEHLRGLSNLTSLS-------------------FRRNNAITAQGMKAFAGLI- 131
             ++ D     +  LSN+T+L                      R   +  +G+     +I 
Sbjct: 614  NKLLD-----VTTLSNITTLEDLNLDNCSNIRKGLSVLGELPRLCVLNIKGVHLKDSVIG 668

Query: 132  ------NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
                  + VKL LE C +  G +  L  L+ LE LN+ +C+ +T S M  L  L  L+ L
Sbjct: 669  SLGNGNSFVKLSLENC-KGFGDVKPLSNLVTLEELNLHYCDKVT-SGMGTLGRLLQLRVL 726

Query: 186  QI--------------------------SCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTA 218
             +                           C K+T  S IA L  L++L   N++ C    
Sbjct: 727  DLGRTQVDNNSLENICTSSSPLVSLNLSHCKKITSISAIASLTALEEL---NIDNCCNVT 783

Query: 219  ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTN 277
            +  +    L  L    L+  +++D+     S+  SL  LNL F  +ITD  +  L  +T 
Sbjct: 784  SGWNVFGTLHQLRVATLSNTRINDENVRHVSECKSLNTLNLAFCKDITD--VTALSKITM 841

Query: 278  LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
            LE LNLD C    +G+  L  L   + L + + Q+G S  +  S L N +S+       S
Sbjct: 842  LEELNLDCCPNIRKGIETLGTLPKARILSMKECQIGDSDAQQCSILGNSKSLVKLNLERS 901

Query: 338  DG--SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
             G  S++ L+ +++L+ L LD  Q     +  + S + L HL +   + TD      +N 
Sbjct: 902  RGRISVKALSNIATLEELVLDHAQ----EVCCIPSFSCLPHLRVLNVKYTDINGDVTKNI 957

Query: 396  KNLRSLEICG----GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
               +SL +        +TD  V  +  LS+L  LN+ + CN   K  E +  L  L    
Sbjct: 958  SESKSLRLLNLSHCKWVTDISV--LSSLSTLEKLNV-KCCNGIRKGWESLGKLPLLRVAI 1014

Query: 452  VSNSRITSAGL 462
            +S++ IT+  +
Sbjct: 1015 LSDTNITAKDI 1025



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 166/378 (43%), Gaps = 56/378 (14%)

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
           ++A A ++ L KL L  CT I  G+  L  L +L+ L++   N   +S ++ L     + 
Sbjct: 477 VEALANILTLEKLSLHGCTDIDAGIGCLGNLPQLKMLDLSGTNTDNES-LRSLCLSQTMV 535

Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           SL +S C K+T+  ++++  L+ L  LNL  C    A  +++  L  L    L    ++D
Sbjct: 536 SLNLSHCWKMTN--VSHISSLEALNELNLSNCFGINAGWEAIEKLQQLHVAILPNTHITD 593

Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV---NLTG 298
                FS   +L  L+L F N++ D  +  L  +T LE LNLD+C    +GL     L  
Sbjct: 594 RDISHFSNCKNLVTLDLSFCNKLLD--VTTLSNITTLEDLNLDNCSNIRKGLSVLGELPR 651

Query: 299 LC--NLKCLELSDTQVGSSG------------------LRHLSGLTNLESINLSFTGISD 338
           LC  N+K + L D+ +GS G                  ++ LS L  LE +NL +     
Sbjct: 652 LCVLNIKGVHLKDSVIGSLGNGNSFVKLSLENCKGFGDVKPLSNLVTLEELNLHYCDKVT 711

Query: 339 GSLRKLAGLSSLKSLNLDARQITD------------------------TGLAALTSLTGL 374
             +  L  L  L+ L+L   Q+ +                        T ++A+ SLT L
Sbjct: 712 SGMGTLGRLLQLRVLDLGRTQVDNNSLENICTSSSPLVSLNLSHCKKITSISAIASLTAL 771

Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
             L++       SG         LR   +    + D  V+H+ +  SL  LNL+   ++T
Sbjct: 772 EELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRINDENVRHVSECKSLNTLNLAFCKDIT 831

Query: 435 DKTLELISGLTGLVSLNV 452
           D T   +S +T L  LN+
Sbjct: 832 DVT--ALSKITMLEELNL 847



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 177/394 (44%), Gaps = 37/394 (9%)

Query: 94  ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
           I +    HL  +  L  L+      +T   ++  + L NL+ LDL         +  +  
Sbjct: 189 IDNNDARHLFNIGTLEKLAITDTMQLT--NIRGISRLTNLMCLDLNSTNIDDSCVRRICA 246

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLE 212
            +KL  L++  CN ITD+   P+S L  L+ L + SC  +T  GI  L  L +L +L+L 
Sbjct: 247 CVKLSKLSVSECNNITDA--TPISQLEALEELNLNSCYHIT-KGIGTLGMLLRLRILDLS 303

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRC-QLSD---------------DGCEKFSK------ 250
           G PV   CL  L   GSL  LN++ C QL D               +GC + ++      
Sbjct: 304 GVPVEDNCLKGLCDCGSLERLNISYCIQLKDINPLSNATATEELNLNGCRRITRGIGVVW 363

Query: 251 -IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELS 308
            +  L+VL++    +++  L  +     L  ++LD+C G GD  L  L+ +  L+ L + 
Sbjct: 364 ALPKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTL--LSSIVTLEELNIQ 421

Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAA 367
                 SG+  L  L  L  +N+    IS      +    SL  LN+++  IT  + + A
Sbjct: 422 KCADIISGVGCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMES--ITGLSNVEA 479

Query: 368 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
           L ++  L  L L G    D+G   L N   L+ L++ G    +  ++ +    ++  LNL
Sbjct: 480 LANILTLEKLSLHGCTDIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTMVSLNL 539

Query: 428 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
           S    +T+  +  IS L  L  LN+SN    +AG
Sbjct: 540 SHCWKMTN--VSHISSLEALNELNLSNCFGINAG 571



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 162/346 (46%), Gaps = 14/346 (4%)

Query: 124  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
            +   + L  L KL+++ C  I  G  +L G + L  + I     IT  D+  LS    L 
Sbjct: 977  ISVLSSLSTLEKLNVKCCNGIRKGWESL-GKLPLLRVAILSDTNITAKDIACLSSCKTLV 1035

Query: 184  SLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
             L+   C K++D  + Y   +Q L  L +  C      L++L  L  L +L+L   + SD
Sbjct: 1036 KLKFFRCEKLSDVTVVY--KIQSLEELMVRSCSDGLKGLNALGTLPRLRFLHLRNLKGSD 1093

Query: 243  DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
               E      SL  LN+    E+T+     L  +T+LE L+L  CG   EG+  L  L  
Sbjct: 1094 ISVESIGTSKSLVRLNIEMREELTNA--TPLSNITSLEELSLRDCGDNLEGVGTLGKLPR 1151

Query: 302  LKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            LK L+L  +++    L  +    ++ S+NL S   ++D S   ++ L++L+ +NL     
Sbjct: 1152 LKSLDLGLSRISDDTLDDICLSRSITSLNLASSWKLTDIS--HISNLTALEEMNLSGCYP 1209

Query: 361  TDTGLAALTSLTGLTHLDLFGARITDS-GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
             ++G  AL+ L  L  ++L  A +T      Y+   K L +L I    +TDA   +I ++
Sbjct: 1210 INSGWKALSELPRLRVVNLESASVTTRYDGYYISRCKYLVTLNIQLSDMTDAS--YIANI 1267

Query: 420  SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
             +L  L + ++  LT     L + L  L  L++  SRIT   LR +
Sbjct: 1268 KTLEELRIGKSKELTQGFSALFT-LPRLRILDLFMSRITDEDLREI 1312



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 127/300 (42%), Gaps = 57/300 (19%)

Query: 67   SDVTDSGLIHLKDC-------------SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
            S++T    + L+DC               L+SLD     +ISD  L+ +    ++TSL+ 
Sbjct: 1123 SNITSLEELSLRDCGDNLEGVGTLGKLPRLKSLDLGLS-RISDDTLDDICLSRSITSLNL 1181

Query: 114  RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
              +  +T   +   + L  L +++L  C  I+ G   L  L +L  +N++  +  T  D 
Sbjct: 1182 ASSWKLT--DISHISNLTALEEMNLSGCYPINSGWKALSELPRLRVVNLESASVTTRYDG 1239

Query: 174  KPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
              +S    L +L I  S +TD S IA +K L++L +             +      +LF 
Sbjct: 1240 YYISRCKYLVTLNIQLSDMTDASYIANIKTLEELRI---------GKSKELTQGFSALFT 1290

Query: 233  LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
            L                    L++L+L  + ITDE L  ++    +E LNL  C    E 
Sbjct: 1291 L------------------PRLRILDLFMSRITDEDLREIQPPHTIEELNLSYC----EE 1328

Query: 293  LVNLTGLCNLKCL------ELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGS--LRK 343
            L ++T L  +K +      +  D +  + G R L  L  L  ++L +  G SD S  LRK
Sbjct: 1329 LNDITPLGRIKSIKKLHLRQRHDVRRPTEGFRSLLELPCLSWVDLDNVYGWSDVSCELRK 1388


>gi|281211117|gb|EFA85283.1| Histidine kinase A [Polysphondylium pallidum PN500]
          Length = 1839

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 119/429 (27%), Positives = 202/429 (47%), Gaps = 61/429 (14%)

Query: 33   LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
            LQ++ L +   V D  +  IA+    L++V L   ++TD+ +IHL + C  + +L  + C
Sbjct: 1413 LQNINLNKCRAVTDDKIIAIANMQLPLVNVYLKKCNITDNAIIHLTQSCPKIAALQLSGC 1472

Query: 92   IQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGM-KAFAGLINLVKLDL-ERCTRIHGGL 148
              + D  +  +      L  L  +R   +T+  + K F  L N+  + L E    +    
Sbjct: 1473 KNLGDASINAIATNCLGLRELRMKRCPLVTSNSIDKMFRLLHNIHIVTLAESPMAVSDNT 1532

Query: 149  VNLKG--LMKLESLNIKWCNCITDSDMKPLSGLTN-LKSLQIS-CSKVTDSGIAYL-KGL 203
            + L G    +++ +N+   + ITD  +  L   TN ++ L IS C  +TD GI ++ +  
Sbjct: 1533 LRLMGKYCTEIQCVNVSHNSIITDVGLINLVKFTNTIQELNISQCVNITDIGIQHIAQAC 1592

Query: 204  QKLTLLNLEGC-------PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
             KL +L + G        P+  +C D       L  L+++ C           KI S   
Sbjct: 1593 GKLRILRMSGLNNVTSLKPIGKSCAD-------LVELDISECH----------KISS--- 1632

Query: 257  LNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG-LCNLKCLELSDTQVGS 314
             +LG+  IT       KG   L S  L  C G+ D  L++  G +  +  L + D   G+
Sbjct: 1633 -DLGY--IT-------KGCPKLTSFKLRRCYGLQDVSLLSEDGEIHAMSKLSVLDWSYGN 1682

Query: 315  SGLRHLSGLT----NLESINLSF-TGISDGSLRKLAG-LSSLKSLNLDAR-QITDTGLAA 367
               + +  +T    +L S+N+S+   ++D S+ ++A  LS+LK L +D+   ITD G+ A
Sbjct: 1683 IEFQTIHSITHSCKSLTSLNISYCKSLTDTSIERIASSLSNLKKLKMDSVVNITDDGIKA 1742

Query: 368  LTSL---TGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
            L+     + +  L L G R I+D  A Y+  F NL+ L + G  +T AGV+ I    S  
Sbjct: 1743 LSEAPIASSIEDLSLVGCRKISDVSAQYILRFHNLKKLSLGGCLMTTAGVESIA-AESFE 1801

Query: 424  LLNLS-QNC 431
            L+ +S +NC
Sbjct: 1802 LVKISIRNC 1810



 Score = 47.0 bits (110), Expect = 0.021,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 158/353 (44%), Gaps = 44/353 (12%)

Query: 149  VNLKGLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSKVTDSGIAYL-KGLQKL 206
            + LK L  L+++N+  C  +TD  +  ++ +   L ++ +    +TD+ I +L +   K+
Sbjct: 1405 IPLKPLTFLQNINLNKCRAVTDDKIIAIANMQLPLVNVYLKKCNITDNAIIHLTQSCPKI 1464

Query: 207  TLLNLEGCP-VTAACLDSLSA--LGSLFYLNLNRCQL--SDDGCEKFSKIGSLKVLNLGF 261
              L L GC  +  A +++++   LG L  L + RC L  S+   + F  + ++ ++ L  
Sbjct: 1465 AALQLSGCKNLGDASINAIATNCLG-LRELRMKRCPLVTSNSIDKMFRLLHNIHIVTLAE 1523

Query: 262  N--EITDECLVHL-KGLTNLESLNLDSCGI-GDEGLVNLTGLCNL-------KCLELSDT 310
            +   ++D  L  + K  T ++ +N+    I  D GL+NL    N        +C+ ++D 
Sbjct: 1524 SPMAVSDNTLRLMGKYCTEIQCVNVSHNSIITDVGLINLVKFTNTIQELNISQCVNITDI 1583

Query: 311  QV-------GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
             +       G   +  +SGL N+ S  L   G S   L +L  +S    ++ D   IT  
Sbjct: 1584 GIQHIAQACGKLRILRMSGLNNVTS--LKPIGKSCADLVEL-DISECHKISSDLGYIT-K 1639

Query: 364  GLAALTSLT-----GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK- 417
            G   LTS       GL  + L       S    +     L  L+   G +    +  I  
Sbjct: 1640 GCPKLTSFKLRRCYGLQDVSLL------SEDGEIHAMSKLSVLDWSYGNIEFQTIHSITH 1693

Query: 418  DLSSLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNV-SNSRITSAGLRHLNHA 468
               SLT LN+S   +LTD ++E I S L+ L  L + S   IT  G++ L+ A
Sbjct: 1694 SCKSLTSLNISYCKSLTDTSIERIASSLSNLKKLKMDSVVNITDDGIKALSEA 1746


>gi|290975915|ref|XP_002670687.1| predicted protein [Naegleria gruberi]
 gi|284084248|gb|EFC37943.1| predicted protein [Naegleria gruberi]
          Length = 402

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 113/250 (45%), Gaps = 1/250 (0%)

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
           L +L IS + + + G  ++  L++LTLLN+    +       +  L  L YL++++  + 
Sbjct: 130 LTTLYISRNNIENDGAKHISALKQLTLLNISSNNIEEEGAKYIGKLEKLTYLDISKNDIR 189

Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
            +G    S++  L  L +  N I +E   HL  LTNL  L       G EG  +++ +  
Sbjct: 190 SNGALYISELKQLTSLVISSNNIDEEGAAHLIKLTNLTELETVRNEFGAEGAKHISEMKQ 249

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDARQI 360
           L  L ++D  +G  G +++S +  L  +N+    I+D  +      L+ L  L ++   I
Sbjct: 250 LINLNINDNFIGDEGAKYISEMKQLTILNIGSNEITDRVNFENFGQLNQLTELYIEDNSI 309

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
                  ++ L  L  LD+ G  +   GA Y+     L  LEI    L + G KHI  + 
Sbjct: 310 QTNACKYISQLQNLNLLDISGNNVDAEGAKYISQMNQLTELEIHTNSLGNEGAKHISTMK 369

Query: 421 SLTLLNLSQN 430
            L  L L  N
Sbjct: 370 ELEYLYLCDN 379



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 111/264 (42%), Gaps = 29/264 (10%)

Query: 94  ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC-TRIHGGLVNLK 152
           I + G +H+  L  LT L+   NN I  +G K    L  L  LD+ +   R +G L    
Sbjct: 140 IENDGAKHISALKQLTLLNISSNN-IEEEGAKYIGKLEKLTYLDISKNDIRSNGALY--- 195

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
                                  +S L  L SL IS + + + G A+L  L  LT L   
Sbjct: 196 -----------------------ISELKQLTSLVISSNNIDEEGAAHLIKLTNLTELETV 232

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVH 271
                A     +S +  L  LN+N   + D+G +  S++  L +LN+G NEITD     +
Sbjct: 233 RNEFGAEGAKHISEMKQLINLNINDNFIGDEGAKYISEMKQLTILNIGSNEITDRVNFEN 292

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
              L  L  L ++   I       ++ L NL  L++S   V + G +++S +  L  + +
Sbjct: 293 FGQLNQLTELYIEDNSIQTNACKYISQLQNLNLLDISGNNVDAEGAKYISQMNQLTELEI 352

Query: 332 SFTGISDGSLRKLAGLSSLKSLNL 355
               + +   + ++ +  L+ L L
Sbjct: 353 HTNSLGNEGAKHISTMKELEYLYL 376



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 2/189 (1%)

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           L +L +    I ++G  +++ L  L  L +S   +   G +++  L  L  +++S   I 
Sbjct: 130 LTTLYISRNNIENDGAKHISALKQLTLLNISSNNIEEEGAKYIGKLEKLTYLDISKNDIR 189

Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
                 ++ L  L SL + +  I + G A L  LT LT L+         GA ++   K 
Sbjct: 190 SNGALYISELKQLTSLVISSNNIDEEGAAHLIKLTNLTELETVRNEFGAEGAKHISEMKQ 249

Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSR 456
           L +L I    + D G K+I ++  LT+LN+  N  +TD+   E    L  L  L + ++ 
Sbjct: 250 LINLNINDNFIGDEGAKYISEMKQLTILNIGSN-EITDRVNFENFGQLNQLTELYIEDNS 308

Query: 457 ITSAGLRHL 465
           I +   +++
Sbjct: 309 IQTNACKYI 317



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 93/223 (41%), Gaps = 28/223 (12%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+   L S+ +S +++ +                          G  HL  L+NLT L  
Sbjct: 197 SELKQLTSLVISSNNIDEE-------------------------GAAHLIKLTNLTELET 231

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS-D 172
            R N   A+G K  + +  L+ L++        G   +  + +L  LNI   N ITD  +
Sbjct: 232 VR-NEFGAEGAKHISEMKQLINLNINDNFIGDEGAKYISEMKQLTILNI-GSNEITDRVN 289

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
            +    L  L  L I  + +  +   Y+  LQ L LL++ G  V A     +S +  L  
Sbjct: 290 FENFGQLNQLTELYIEDNSIQTNACKYISQLQNLNLLDISGNNVDAEGAKYISQMNQLTE 349

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
           L ++   L ++G +  S +  L+ L L  N+++ E   H++ +
Sbjct: 350 LEIHTNSLGNEGAKHISTMKELEYLYLCDNDVSVEVKQHIREI 392



 Score = 38.5 bits (88), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
           K+L +L I    + + G KHI  L  LTLLN+S N N+ ++  + I  L  L  L++S +
Sbjct: 128 KSLTTLYISRNNIENDGAKHISALKQLTLLNISSN-NIEEEGAKYIGKLEKLTYLDISKN 186

Query: 456 RITSAG 461
            I S G
Sbjct: 187 DIRSNG 192


>gi|41393121|ref|NP_958890.1| F-box and leucine-rich repeat protein 14a [Danio rerio]
 gi|37681873|gb|AAQ97814.1| hypothetical protein MGC40195 [Danio rerio]
 gi|66911816|gb|AAH96775.1| F-box and leucine-rich repeat protein 14a [Danio rerio]
 gi|157423043|gb|AAI53540.1| Fbxl14a protein [Danio rerio]
 gi|182891432|gb|AAI64514.1| Fbxl14a protein [Danio rerio]
          Length = 411

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 114/352 (32%), Positives = 179/352 (50%), Gaps = 34/352 (9%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
           RG+  +  LS RR+ +   QGM       N+  L+L  C  +     G   ++ +  L  
Sbjct: 68  RGIKKVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQDIPSLRI 121

Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC-P 215
           LN+  C  ITDS +  ++  L NL+ L +  CS +T++G+  +  GL  L  LNL  C  
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRH 181

Query: 216 VTAACLDSLSALG--------SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
           V+   +  L+ +         +L +L L  CQ L+D   +  SK +  LKVLNL F   I
Sbjct: 182 VSDVGIGHLAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGGI 241

Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS 321
           +D  ++HL  +T L +LNL SC  I D G+++L+ G   L  L++S   +VG   L +++
Sbjct: 242 SDAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIA 301

Query: 322 -GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHL 377
            GL  L+S++L    ISD  + R +  +  LK+LN+    +ITD GL  +   LT LT +
Sbjct: 302 QGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGI 361

Query: 378 DLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
           DL+G  +IT  G   +     L+ L +    +T+  VK + D S +  L  S
Sbjct: 362 DLYGCTKITKRGLERITQLPCLKVLNLGLWQMTE--VKGLGDASEILPLYAS 411



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 172/328 (52%), Gaps = 50/328 (15%)

Query: 61  SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           S++LSG  ++TD+GL H  ++D  +L+ L+ + C QI+D  L  +               
Sbjct: 94  SLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCKQITDSSLGRI--------------- 138

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
              AQ +K      NL  LDL  C+ I   G L+   GL  L+SLN++ C  ++D  +  
Sbjct: 139 ---AQYLK------NLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGH 189

Query: 176 LSGLTN--------LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSL 224
           L+G+T         L+ L +  C K+TD  + ++ KGL KL +LNL  C  ++ A +  L
Sbjct: 190 LAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGGISDAGMIHL 249

Query: 225 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 279
           S +  L+ LNL  C  +SD G    S +G+L++  L++ F +++ D+ L ++ +GL  L+
Sbjct: 250 SHMTQLWTLNLRSCDNISDTGIMHLS-MGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLK 308

Query: 280 SLNLDSCGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTG 335
           SL+L SC I D+G+  +   +  LK L +    ++   GL  ++  LT L  I+L   T 
Sbjct: 309 SLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTK 368

Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDT 363
           I+   L ++  L  LK LNL   Q+T+ 
Sbjct: 369 ITKRGLERITQLPCLKVLNLGLWQMTEV 396



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 168/317 (52%), Gaps = 48/317 (15%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           + G+ N++SL +S C  +TD+G+  A+++ +  L +LNL  C                  
Sbjct: 86  IQGMPNIESLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCK----------------- 128

Query: 233 LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GI 288
                 Q++D    + ++ + +L++L+LG  + IT+  L+ +  GL NL+SLNL SC  +
Sbjct: 129 ------QITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHV 182

Query: 289 GDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-IS 337
            D G+ +L G+          L+ L L D Q +    L+H+S GL  L+ +NLSF G IS
Sbjct: 183 SDVGIGHLAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGGIS 242

Query: 338 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALT-SLTGLTHLDL-FGARITDSGAAYL-R 393
           D  +  L+ ++ L +LNL +   I+DTG+  L+     L  LD+ F  ++ D   AY+ +
Sbjct: 243 DAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIAQ 302

Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  LT L  ++
Sbjct: 303 GLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGID 362

Query: 452 VSN-SRITSAGLRHLNH 467
           +   ++IT  GL  +  
Sbjct: 363 LYGCTKITKRGLERITQ 379



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 140/283 (49%), Gaps = 33/283 (11%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
           + D  +  IA    +L  +DL G S++T++GL+ +     NL+SL+   C  +SD G+ H
Sbjct: 130 ITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGH 189

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
           L G++                   A  G + L  L L+ C ++    L ++ KGL KL+ 
Sbjct: 190 LAGMTR-----------------SAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKV 232

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
           LN+ +C  I+D+ M  LS +T L +L + SC  ++D+GI +L  G  +L  L++  C   
Sbjct: 233 LNLSFCGGISDAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKV 292

Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVH 271
                SL+ +    Y    L+L  C +SDDG  +  + +  LK LN+G    ITD+ L  
Sbjct: 293 GD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLEL 350

Query: 272 LK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQV 312
           +   LT L  ++L  C  I   GL  +T L  LK L L   Q+
Sbjct: 351 IADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQM 393


>gi|290972233|ref|XP_002668860.1| predicted protein [Naegleria gruberi]
 gi|284082393|gb|EFC36116.1| predicted protein [Naegleria gruberi]
          Length = 296

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 150/299 (50%), Gaps = 3/299 (1%)

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
           + +L +LN++  N I +   K +S L N+ +L IS + +   G  Y+  +++LT L +  
Sbjct: 1   MKQLTNLNVRH-NDIDEEGAKYISELMNVSTLDISGNSINKRGAKYIGEMKQLTDLGMYC 59

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
           C +       +S+L  L +L++N   + D+G +   +I  L  L++  N+I  E + ++ 
Sbjct: 60  CSIGVEGTKYISSLNQLTHLSININNIGDEGAKYIGQIKQLTDLSICDNKIGSEGVKYIG 119

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
            L NL  L +    IGD G   ++ +  L  L++S   +   G++++S + +L  + +S 
Sbjct: 120 QLKNLLKLYVSCNEIGDNGAQFISEMNQLTKLDISSVNITPIGIKYISKMEHLIDLMISD 179

Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
             I     + ++ +  L SL +    I   G   L+ +  LT+L++    I D G  +L 
Sbjct: 180 NNIDSMGAKHISQM-KLTSLEVYNNTIDVEGAKYLSEMEQLTNLEISKNEIGDKGVQFLS 238

Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
             K L SL+I    ++D G K+I ++ +L  L++  N  +++  +E +  +  L  L++
Sbjct: 239 GMKQLTSLDINENKISDVGAKYILEMKNLIDLSVFDN-EISEDIIERLREMKQLTYLDI 296



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 155/331 (46%), Gaps = 43/331 (12%)

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG------LMKLE 158
           +  LT+L+ R N+ I  +G K  + L+N+  LD      I G  +N +G      + +L 
Sbjct: 1   MKQLTNLNVRHND-IDEEGAKYISELMNVSTLD------ISGNSINKRGAKYIGEMKQLT 53

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
            L + +C  I     K +S L  L  L I+ + + D G  Y+  +++LT L++  C    
Sbjct: 54  DLGM-YCCSIGVEGTKYISSLNQLTHLSININNIGDEGAKYIGQIKQLTDLSI--CD--- 107

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
                 + +GS             +G +   ++ +L  L +  NEI D     +  +  L
Sbjct: 108 ------NKIGS-------------EGVKYIGQLKNLLKLYVSCNEIGDNGAQFISEMNQL 148

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS--GLTNLESINLSFTGI 336
             L++ S  I   G+  ++ + +L  L +SD  + S G +H+S   LT+LE  N     I
Sbjct: 149 TKLDISSVNITPIGIKYISKMEHLIDLMISDNNIDSMGAKHISQMKLTSLEVYN---NTI 205

Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
                + L+ +  L +L +   +I D G+  L+ +  LT LD+   +I+D GA Y+   K
Sbjct: 206 DVEGAKYLSEMEQLTNLEISKNEIGDKGVQFLSGMKQLTSLDINENKISDVGAKYILEMK 265

Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
           NL  L +    +++  ++ ++++  LT L++
Sbjct: 266 NLIDLSVFDNEISEDIIERLREMKQLTYLDI 296



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 122/257 (47%), Gaps = 26/257 (10%)

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           LN+    + ++G +  S++ ++  L++  N I      ++  +  L  L +  C IG EG
Sbjct: 7   LNVRHNDIDEEGAKYISELMNVSTLDISGNSINKRGAKYIGEMKQLTDLGMYCCSIGVEG 66

Query: 293 LVNLTGLCNLKCLELS------------------------DTQVGSSGLRHLSGLTNLES 328
              ++ L  L  L ++                        D ++GS G++++  L NL  
Sbjct: 67  TKYISSLNQLTHLSININNIGDEGAKYIGQIKQLTDLSICDNKIGSEGVKYIGQLKNLLK 126

Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
           + +S   I D   + ++ ++ L  L++ +  IT  G+  ++ +  L  L +    I   G
Sbjct: 127 LYVSCNEIGDNGAQFISEMNQLTKLDISSVNITPIGIKYISKMEHLIDLMISDNNIDSMG 186

Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
           A ++   K L SLE+    +   G K++ ++  LT L +S+N  + DK ++ +SG+  L 
Sbjct: 187 AKHISQMK-LTSLEVYNNTIDVEGAKYLSEMEQLTNLEISKN-EIGDKGVQFLSGMKQLT 244

Query: 449 SLNVSNSRITSAGLRHL 465
           SL+++ ++I+  G +++
Sbjct: 245 SLDINENKISDVGAKYI 261



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 135/297 (45%), Gaps = 32/297 (10%)

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           ++D+SG+ +   G  ++ +   L  L   +C  I   G +++  L+ LT LS   NN I 
Sbjct: 30  TLDISGNSINKRGAKYIGEMKQLTDLGM-YCCSIGVEGTKYISSLNQLTHLSININN-IG 87

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
            +G K    +  L   DL  C                        N I    +K +  L 
Sbjct: 88  DEGAKYIGQIKQLT--DLSICD-----------------------NKIGSEGVKYIGQLK 122

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NL  L +SC+++ D+G  ++  + +LT L++    +T   +  +S +  L  L ++   +
Sbjct: 123 NLLKLYVSCNEIGDNGAQFISEMNQLTKLDISSVNITPIGIKYISKMEHLIDLMISDNNI 182

Query: 241 SDDGCEKFS--KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
              G +  S  K+ SL+V N   N I  E   +L  +  L +L +    IGD+G+  L+G
Sbjct: 183 DSMGAKHISQMKLTSLEVYN---NTIDVEGAKYLSEMEQLTNLEISKNEIGDKGVQFLSG 239

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           +  L  L++++ ++   G +++  + NL  +++    IS+  + +L  +  L  L++
Sbjct: 240 MKQLTSLDINENKISDVGAKYILEMKNLIDLSVFDNEISEDIIERLREMKQLTYLDI 296



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 98/198 (49%), Gaps = 4/198 (2%)

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
           +K LTNL   N+    I +EG   ++ L N+  L++S   +   G +++  +  L  + +
Sbjct: 1   MKQLTNL---NVRHNDIDEEGAKYISELMNVSTLDISGNSINKRGAKYIGEMKQLTDLGM 57

Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
               I     + ++ L+ L  L+++   I D G   +  +  LT L +   +I   G  Y
Sbjct: 58  YCCSIGVEGTKYISSLNQLTHLSININNIGDEGAKYIGQIKQLTDLSICDNKIGSEGVKY 117

Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
           +   KNL  L +    + D G + I +++ LT L++S + N+T   ++ IS +  L+ L 
Sbjct: 118 IGQLKNLLKLYVSCNEIGDNGAQFISEMNQLTKLDIS-SVNITPIGIKYISKMEHLIDLM 176

Query: 452 VSNSRITSAGLRHLNHAR 469
           +S++ I S G +H++  +
Sbjct: 177 ISDNNIDSMGAKHISQMK 194


>gi|320167107|gb|EFW44006.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 624

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 112/238 (47%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N IT       +GLT L  L +  +++T        GL  LT L      +T+   D+ +
Sbjct: 68  NSITSISANAFTGLTALTYLSLQYNQITGIPAGTFTGLTALTALFFAYNQITSIPADTFT 127

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            L SL YL+L   Q++      F+ + +L  L+LG N+IT        GLT L +L+L +
Sbjct: 128 GLTSLTYLSLQNNQVTSISGTAFTGLTALTSLSLGPNQITSIPADTFTGLTALTTLSLQN 187

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
             I        TGL  L CL     Q+ S      +G+T+L  ++L    I+  S    A
Sbjct: 188 NQITSISGTAFTGLTALTCLYFGSNQITSIPAGAFTGMTSLTYLSLYLNKITSISANAFA 247

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           GL++L  L+L   +IT   + A T LTGLT L L G +IT   ++   N   L +L +
Sbjct: 248 GLTALTYLSLFNNKITSIPVGAFTGLTGLTDLYLDGNQITSIPSSSFTNLTALTALAL 305



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 122/284 (42%), Gaps = 31/284 (10%)

Query: 117 NAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
           N+IT+    AF GL  L  L L+  + T I  G     GL  L +L   + N IT     
Sbjct: 68  NSITSISANAFTGLTALTYLSLQYNQITGIPAG--TFTGLTALTALFFAY-NQITSIPAD 124

Query: 175 PLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
             +GLT+L  L +  ++VT  SG A+  GL  LT L+L    +T+   D+ + L +L  L
Sbjct: 125 TFTGLTSLTYLSLQNNQVTSISGTAF-TGLTALTSLSLGPNQITSIPADTFTGLTALTTL 183

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +L   Q++      F+ + +L  L  G N+IT        G+T+L  L+L    I     
Sbjct: 184 SLQNNQITSISGTAFTGLTALTCLYFGSNQITSIPAGAFTGMTSLTYLSLYLNKI----- 238

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
                           T + ++    L+ LT L   N   T I  G+   L GL+ L   
Sbjct: 239 ----------------TSISANAFAGLTALTYLSLFNNKITSIPVGAFTGLTGLTDLY-- 280

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
            LD  QIT    ++ T+LT LT L L    IT       +   N
Sbjct: 281 -LDGNQITSIPSSSFTNLTALTALALQNNPITTLPPGLFKGLPN 323



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 107/244 (43%), Gaps = 25/244 (10%)

Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
           +T+   ++ + L +L YL+L   Q++      F+ + +L  L   +N+IT        GL
Sbjct: 70  ITSISANAFTGLTALTYLSLQYNQITGIPAGTFTGLTALTALFFAYNQITSIPADTFTGL 129

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
           T+L  L+L +  +        TGL  L  L L   Q+ S      +GLT L +++L    
Sbjct: 130 TSLTYLSLQNNQVTSISGTAFTGLTALTSLSLGPNQITSIPADTFTGLTALTTLSLQNNQ 189

Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
           I+  S     GL++L  L   + QIT     A T +T LT+L L+  +IT   A      
Sbjct: 190 ITSISGTAFTGLTALTCLYFGSNQITSIPAGAFTGMTSLTYLSLYLNKITSISA------ 243

Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
                                  L++LT L+L  N  +T   +   +GLTGL  L +  +
Sbjct: 244 ------------------NAFAGLTALTYLSLFNN-KITSIPVGAFTGLTGLTDLYLDGN 284

Query: 456 RITS 459
           +ITS
Sbjct: 285 QITS 288



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 7/159 (4%)

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
           ++ C   S T + S    H + LT      L    I+  S     GL++L  L+L   QI
Sbjct: 41  DVNCYGQSLTAIPSGIPTHTTQLT------LDLNSITSISANAFTGLTALTYLSLQYNQI 94

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           T       T LT LT L     +IT   A       +L  L +    +T         L+
Sbjct: 95  TGIPAGTFTGLTALTALFFAYNQITSIPADTFTGLTSLTYLSLQNNQVTSISGTAFTGLT 154

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
           +LT L+L  N  +T    +  +GLT L +L++ N++ITS
Sbjct: 155 ALTSLSLGPN-QITSIPADTFTGLTALTTLSLQNNQITS 192



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 68/145 (46%), Gaps = 6/145 (4%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
           QI+    +   GL+ LT+LS + NN IT+    AF GL  L  L     + T I  G   
Sbjct: 165 QITSIPADTFTGLTALTTLSLQ-NNQITSISGTAFTGLTALTCLYFGSNQITSIPAGA-- 221

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
             G+  L  L++ + N IT       +GLT L  L +  +K+T   +    GL  LT L 
Sbjct: 222 FTGMTSLTYLSL-YLNKITSISANAFAGLTALTYLSLFNNKITSIPVGAFTGLTGLTDLY 280

Query: 211 LEGCPVTAACLDSLSALGSLFYLNL 235
           L+G  +T+    S + L +L  L L
Sbjct: 281 LDGNQITSIPSSSFTNLTALTALAL 305


>gi|320170955|gb|EFW47854.1| hypothetical protein CAOG_05792 [Capsaspora owczarzaki ATCC 30864]
          Length = 727

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 108/375 (28%), Positives = 161/375 (42%), Gaps = 11/375 (2%)

Query: 85  SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCT 142
           SLD+N    I     +   GL+ LT LS   N  IT+     F G+  L  L L   + T
Sbjct: 74  SLDYNLITSIPA---DAFTGLTALTYLSLYAN-PITSIPAGTFTGVTALTYLSLSSNQIT 129

Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
            I  G      L  L SL + + N IT       + LT L  L +  +++T    A+  G
Sbjct: 130 SIPAGA--FTDLTALRSLFL-YANLITSISANAFTSLTALTYLHLYGNQITSISNAF-TG 185

Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
           L  LT L+L    +T+   ++ + L +L  L+L   Q++    + F+ + +L  L L  N
Sbjct: 186 LTALTELHLYNNHITSISANAFTDLTALTELSLISNQITSIPADTFTGLTALTYLYLNSN 245

Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
           +IT        GLT L  L+L+S  I        T L  L  L  +   + S      +G
Sbjct: 246 QITSIPADTFTGLTALTYLSLNSNSITSIAATAFTDLTALTYLSFNSNSITSISANAFAG 305

Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
           LT L  +  S   I+  S    AGL++L  L+L + QIT       T +T LT+L L   
Sbjct: 306 LTALTYLFFSSNLITSISANAFAGLTALTYLSLGSNQITSIPAGTFTGVTALTYLSLDSN 365

Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
           +IT   A        L  L +    +T        +L++LT L L  N  +T     L  
Sbjct: 366 QITSIPADTFTGLTALTYLYLGTNQITSLPSSSFTNLTALTYLVLQSN-PITTLPPGLFK 424

Query: 443 GLTGLVSLNVSNSRI 457
           GL   ++L+ SN  +
Sbjct: 425 GLPNDLALSYSNPYL 439



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 126/296 (42%), Gaps = 6/296 (2%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N IT       +GLT L  L +  + +T        GL  LT L+L   P+T+    + +
Sbjct: 54  NPITSIPTNAFTGLTALTFLSLDYNLITSIPADAFTGLTALTYLSLYANPITSIPAGTFT 113

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            + +L YL+L+  Q++      F+ + +L+ L L  N IT         LT L  L+L  
Sbjct: 114 GVTALTYLSLSSNQITSIPAGAFTDLTALRSLFLYANLITSISANAFTSLTALTYLHLYG 173

Query: 286 CGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
             I         LT L  L       T + ++    L+ LT L  I+   T I   +   
Sbjct: 174 NQITSISNAFTGLTALTELHLYNNHITSISANAFTDLTALTELSLISNQITSIPADTFT- 232

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
             GL++L  L L++ QIT       T LT LT+L L    IT   A    +   L  L  
Sbjct: 233 --GLTALTYLYLNSNQITSIPADTFTGLTALTYLSLNSNSITSIAATAFTDLTALTYLSF 290

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
               +T         L++LT L  S N  +T  +    +GLT L  L++ +++ITS
Sbjct: 291 NSNSITSISANAFAGLTALTYLFFSSNL-ITSISANAFAGLTALTYLSLGSNQITS 345



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 129/294 (43%), Gaps = 8/294 (2%)

Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
           T+   L I+ + +T        GL  LT L+L+   +T+   D+ + L +L YL+L    
Sbjct: 44  TDTTKLYINSNPITSIPTNAFTGLTALTFLSLDYNLITSIPADAFTGLTALTYLSLYANP 103

Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
           ++      F+ + +L  L+L  N+IT         LT L SL L +  I        T L
Sbjct: 104 ITSIPAGTFTGVTALTYLSLSSNQITSIPAGAFTDLTALRSLFLYANLITSISANAFTSL 163

Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
             L  L L   Q+ S      +GLT L  ++L    I+  S      L++L  L+L + Q
Sbjct: 164 TALTYLHLYGNQITSIS-NAFTGLTALTELHLYNNHITSISANAFTDLTALTELSLISNQ 222

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
           IT       T LT LT+L L   +IT   A        L  L +    +T        DL
Sbjct: 223 ITSIPADTFTGLTALTYLYLNSNQITSIPADTFTGLTALTYLSLNSNSITSIAATAFTDL 282

Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS------AGLRHLNH 467
           ++LT L+ + N ++T  +    +GLT L  L  S++ ITS      AGL  L +
Sbjct: 283 TALTYLSFNSN-SITSISANAFAGLTALTYLFFSSNLITSISANAFAGLTALTY 335


>gi|343413823|emb|CCD21194.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
          Length = 707

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 128/386 (33%), Positives = 202/386 (52%), Gaps = 35/386 (9%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
           L + S+L++LD + C  I+D  +  L  LS+L +L       IT   +   + L +L  L
Sbjct: 177 LSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTGIT--DVSPLSKLSSLRTL 232

Query: 137 DLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD 194
           DL  CT    G+ ++  L KL SL  +   +C   +D+ PLS L++L++L +S C+ +TD
Sbjct: 233 DLSHCT----GITDVSPLSKLSSLRTLDLSHCTGITDVSPLSELSSLRTLGLSHCTGITD 288

Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
             ++ L  L  L  L+L  C      +  LS L SL  L+L+ C    D     SK+ SL
Sbjct: 289 --VSPLSELSSLRTLDLSHC-TGITDVSPLSELSSLRTLDLSHCTGITD-VSPLSKLSSL 344

Query: 255 KVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQV 312
           + L   +   ITD  +  L  L++L +L    C GI D  +  L+ L  L+ L LS    
Sbjct: 345 RTLYFLYCTGITD--VSPLSELSSLRTLYFSHCTGITD--VSPLSELSGLRMLYLSHCT- 399

Query: 313 GSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTS 370
           G + +  LS  ++L  ++ S  TGI+D S   L+ LSSL++L+L     ITD  ++ L+ 
Sbjct: 400 GITDVSPLSVFSSLRMLDFSHCTGITDVS--PLSKLSSLRTLDLSHCTGITD--VSPLSE 455

Query: 371 LTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLS 428
           L+ L  LDL     ITD   + L    +LR+L++    G+TD  V  + +LSSL  L+LS
Sbjct: 456 LSSLHTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLCTLDLS 511

Query: 429 QNCNLTDKTLELISGLTGLVSLNVSN 454
               +TD  +  +S L+ L +L++S+
Sbjct: 512 HCTGITD--VSPLSELSSLRTLDLSH 535



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 142/431 (32%), Positives = 222/431 (51%), Gaps = 39/431 (9%)

Query: 32  ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
           +L+ L L    G+ D       S+ SSL ++DLS  + +TD  +  L   S+L++LD + 
Sbjct: 205 SLRTLDLSHCTGITDVSP---LSKLSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSH 259

Query: 91  CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
           C  I+D  +  L  LS+L +L       IT   +   + L +L  LDL  CT I   +  
Sbjct: 260 CTGITD--VSPLSELSSLRTLGLSHCTGIT--DVSPLSELSSLRTLDLSHCTGI-TDVSP 314

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAYLKGLQKLTLL 209
           L  L  L +L++  C  ITD  + PLS L++L++L  + C+ +TD  ++ L  L  L  L
Sbjct: 315 LSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLYFLYCTGITD--VSPLSELSSLRTL 370

Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDEC 268
               C      +  LS L  L  L L+ C    D     S   SL++L+      ITD  
Sbjct: 371 YFSHC-TGITDVSPLSELSGLRMLYLSHCTGITD-VSPLSVFSSLRMLDFSHCTGITD-- 426

Query: 269 LVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
           +  L  L++L +L+L  C GI D  +  L+ L +L  L+LS    G + +  LS L++L 
Sbjct: 427 VSPLSKLSSLRTLDLSHCTGITD--VSPLSELSSLHTLDLSHCT-GITDVSPLSELSSLR 483

Query: 328 SINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-I 384
           +++LS  TGI+D S   L+ LSSL +L+L     ITD  ++ L+ L+ L  LDL     I
Sbjct: 484 TLDLSHCTGITDVS--PLSELSSLCTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGI 539

Query: 385 TDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
           TD   + L  F +L +L++    G+TD  V  + +LSSL +LNLS    +TD  +  +S 
Sbjct: 540 TD--VSPLSEFSSLHTLDLSHCTGITD--VSPLSELSSLRMLNLSHCTGITD--VSPLSE 593

Query: 444 LTGLVSLNVSN 454
            + L +L++S+
Sbjct: 594 FSSLHTLDLSH 604



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 76/144 (52%), Gaps = 13/144 (9%)

Query: 54  SQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
           S+ SSL ++DLS  + +TD  +  L + S+L +LD + C  I+D  +  L  LS+L  L+
Sbjct: 523 SELSSLRTLDLSHCTGITD--VSPLSEFSSLHTLDLSHCTGITD--VSPLSELSSLRMLN 578

Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI-KWCNCITDS 171
                 IT   +   +   +L  LDL  CT    G+ ++  L KL SL+I    +C   +
Sbjct: 579 LSHCTGIT--DVSPLSEFSSLHTLDLSHCT----GITDVSPLSKLSSLHILGLSHCTGIT 632

Query: 172 DMKPLSGLTNLKSLQIS-CSKVTD 194
           D+ PL+ +   + L +S C+ +TD
Sbjct: 633 DVSPLTTIIGFEKLYLSNCTGITD 656



 Score = 39.7 bits (91), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 102/190 (53%), Gaps = 22/190 (11%)

Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
           L   ++L  L L  C GI D  +  L+ L +L+ L+LS    G + +  LS  ++LE ++
Sbjct: 16  LSVFSSLRMLYLSHCTGITD--VSPLSKLSSLRTLDLSHCT-GITDVSPLSVFSSLEKLD 72

Query: 331 LSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR----IT 385
           LS  TGI+D S   L+ LSSL++L+L       TG+  ++ L+ L+ L   G      IT
Sbjct: 73  LSHCTGITDVS--PLSKLSSLRTLDLSHC----TGITDVSPLSKLSSLHTLGLSHCTGIT 126

Query: 386 DSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
           D   + L    +L +L++    G+TD  V  + +LSSL  L LS    +TD  +  +S L
Sbjct: 127 D--VSPLSKLSSLHTLDLSHCTGITD--VSPLSELSSLRTLGLSHCTGITD--VSPLSEL 180

Query: 445 TGLVSLNVSN 454
           + L +L++S+
Sbjct: 181 SSLRTLDLSH 190


>gi|413949465|gb|AFW82114.1| hypothetical protein ZEAMMB73_510951 [Zea mays]
          Length = 606

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 182/430 (42%), Gaps = 86/430 (20%)

Query: 15  VYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSG 73
           V+ R + EV L  F               VN +W+  + S    L  + L+   ++ +  
Sbjct: 69  VFGRSVEEVDLSGFL-------------SVNSEWLAYLGS-FRYLRVLKLADCKNINNDA 114

Query: 74  LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
           +  L   + L+ LD + C +ISD G++H+  + +L  L       +T  G+   + L NL
Sbjct: 115 VWSLSGMNTLKELDLSRCKKISDAGIKHIVTIESLEKLHLSETE-LTDNGVMLISSLTNL 173

Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
             LDL         L +L+ L KLE L+I W +  T+     L     L SL ++ ++V 
Sbjct: 174 SFLDLGGILMTDKTLQSLQVLTKLEHLDI-WGSETTNEGASALKSFARLLSLNLALTRVN 232

Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAAC-------------LDSLSALG------------ 228
              I         + LN+  C + + C             + S +  G            
Sbjct: 233 HLSIP-----PTTSYLNMSNCEIHSICDVDSEVPVPLENFIVSAATFGNIDKVFSSIQAS 287

Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL-TNLESLNLDSCG 287
           SL +L+L+ C+LS+       K+ +L+ L+L +N ITD  + H+  + TNL+ L+L + G
Sbjct: 288 SLIHLDLSSCKLSN--LSFLEKMKNLEHLDLSYNIITDGAIEHIAKIGTNLQYLSLKNTG 345

Query: 288 IGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHL-------------------------- 320
           I  + L  L G + NL  L L++T++  S L ++                          
Sbjct: 346 ITSQALCILAGTVPNLTSLSLANTKIDDSALAYIGMIPLLRTIDLSQTSIKGFIHTEVNS 405

Query: 321 ---------SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
                      L  LES+NL  T +S   +  LA  ++LK L L +  ++D  L AL++ 
Sbjct: 406 EKLLSMSAFEHLKYLESLNLEDTPLSAEVIPPLASFATLKYLYLKSDFLSDPALHALSAA 465

Query: 372 TGLTHLDLFG 381
           + L HL   G
Sbjct: 466 SNLIHLGFRG 475



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 164/364 (45%), Gaps = 32/364 (8%)

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPL 176
           ++ ++ +        L  L L  C  I+   V +L G+  L+ L++  C  I+D+ +K +
Sbjct: 84  SVNSEWLAYLGSFRYLRVLKLADCKNINNDAVWSLSGMNTLKELDLSRCKKISDAGIKHI 143

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
             + +L+ L +S +++TD+G+  +  L  L+ L+L G  +T   L SL  L  L +L++ 
Sbjct: 144 VTIESLEKLHLSETELTDNGVMLISSLTNLSFLDLGGILMTDKTLQSLQVLTKLEHLDIW 203

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS-CGIGDEGLVN 295
             + +++G         L  LNL    +    +       N+ +  + S C +  E  V 
Sbjct: 204 GSETTNEGASALKSFARLLSLNLALTRVNHLSIPPTTSYLNMSNCEIHSICDVDSEVPVP 263

Query: 296 LTGLC-------------------NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
           L                       +L  L+LS  ++  S L  L  + NLE ++LS+  I
Sbjct: 264 LENFIVSAATFGNIDKVFSSIQASSLIHLDLSSCKL--SNLSFLEKMKNLEHLDLSYNII 321

Query: 337 SDGSLRKLAGL-SSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRN 394
           +DG++  +A + ++L+ L+L    IT   L  L  ++  LT L L   +I DS  AY+  
Sbjct: 322 TDGAIEHIAKIGTNLQYLSLKNTGITSQALCILAGTVPNLTSLSLANTKIDDSALAYIGM 381

Query: 395 FKNLRSLE-----ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL--ELISGLTGL 447
              LR+++     I G   T+   + +  +S+   L   ++ NL D  L  E+I  L   
Sbjct: 382 IPLLRTIDLSQTSIKGFIHTEVNSEKLLSMSAFEHLKYLESLNLEDTPLSAEVIPPLASF 441

Query: 448 VSLN 451
            +L 
Sbjct: 442 ATLK 445



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 99/176 (56%), Gaps = 8/176 (4%)

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGL 317
           GF  +  E L +L     L  L L  C  I ++ + +L+G+  LK L+LS   ++  +G+
Sbjct: 81  GFLSVNSEWLAYLGSFRYLRVLKLADCKNINNDAVWSLSGMNTLKELDLSRCKKISDAGI 140

Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
           +H+  + +LE ++LS T ++D  +  ++ L++L  L+L    +TD  L +L  LT L HL
Sbjct: 141 KHIVTIESLEKLHLSETELTDNGVMLISSLTNLSFLDLGGILMTDKTLQSLQVLTKLEHL 200

Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
           D++G+  T+ GA+ L++F  L SL +    LT   V H+    + + LN+S NC +
Sbjct: 201 DIWGSETTNEGASALKSFARLLSLNL---ALTR--VNHLSIPPTTSYLNMS-NCEI 250



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 113/239 (47%), Gaps = 26/239 (10%)

Query: 55  QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL-SNLTSLSF 113
           Q SSL+ +DLS   +  S L  L+   NL+ LD ++ I I+DG +EH+  + +NL  LS 
Sbjct: 285 QASSLIHLDLSSCKL--SNLSFLEKMKNLEHLDLSYNI-ITDGAIEHIAKIGTNLQYLSL 341

Query: 114 RRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
           + N  IT+Q +   AG + NL  L L   T+I    +   G++ L            D  
Sbjct: 342 K-NTGITSQALCILAGTVPNLTSLSLAN-TKIDDSALAYIGMIPLLR--------TIDLS 391

Query: 173 MKPLSGLTNLKSLQISCSKV-TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
              + G  +    +++  K+ + S   +LK L+ L   NLE  P++A  +  L++  +L 
Sbjct: 392 QTSIKGFIHT---EVNSEKLLSMSAFEHLKYLESL---NLEDTPLSAEVIPPLASFATLK 445

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGF--NEITDECLVHLKGLTNLESLNLDSCGI 288
           YL L    LSD      S   +L  ++LGF  N ++   L+       L  L+L  C I
Sbjct: 446 YLYLKSDFLSDPALHALSAASNL--IHLGFRGNILSSFGLLQFVPPVTLCVLDLSGCWI 502



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 4/140 (2%)

Query: 325 NLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG- 381
           ++E ++LS F  ++   L  L     L+ L L D + I +  + +L+ +  L  LDL   
Sbjct: 73  SVEEVDLSGFLSVNSEWLAYLGSFRYLRVLKLADCKNINNDAVWSLSGMNTLKELDLSRC 132

Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
            +I+D+G  ++   ++L  L +    LTD GV  I  L++L+ L+L     +TDKTL+ +
Sbjct: 133 KKISDAGIKHIVTIESLEKLHLSETELTDNGVMLISSLTNLSFLDLG-GILMTDKTLQSL 191

Query: 442 SGLTGLVSLNVSNSRITSAG 461
             LT L  L++  S  T+ G
Sbjct: 192 QVLTKLEHLDIWGSETTNEG 211


>gi|84043372|ref|XP_951476.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
 gi|33348176|gb|AAQ15503.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
 gi|62359981|gb|AAX80405.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei]
          Length = 1393

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 108/379 (28%), Positives = 171/379 (45%), Gaps = 58/379 (15%)

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD-MKPLSGLTNL 182
           ++A A ++ L KL L  CT I  G+  L  L +L+ L++   N  TD++ ++ L     +
Sbjct: 477 VEALANILTLEKLSLHGCTDIDAGIGCLGNLPQLKVLDLSGTN--TDNESLRSLCLSQTM 534

Query: 183 KSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
            SL +S C K+T+  ++++  L+ L  LNL  C    A  ++L  L  L    L+   ++
Sbjct: 535 VSLNLSHCWKMTN--VSHISSLEALNELNLSNCIRINAGWEALEKLQQLHVAILSNTHIT 592

Query: 242 DDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV---NLT 297
           D G   FSK  +L  L+L F N++ D  +  L  +T LE LNLDSC    +GL     L 
Sbjct: 593 DRGISYFSKCKNLVTLDLSFCNKLLD--VTTLSNITTLEELNLDSCSNIRKGLSVLGELP 650

Query: 298 GLC--NLKCLELSDTQVGSSG------------------LRHLSGLTNLESINLSFTGIS 337
            LC  N+K ++L D+ +GS G                  +  LS L  LE +NL +    
Sbjct: 651 RLCVLNIKGVQLEDSVIGSLGNGKSLVRLSLENCKGFGDVTPLSNLVTLEELNLHYCDKV 710

Query: 338 DGSLRKLAGLSSLKSLNLDARQITD------------------------TGLAALTSLTG 373
              +  L  L  L+ L+L   Q+ D                        T ++A+ SLT 
Sbjct: 711 TSGMGTLGRLPQLRVLDLGRTQVDDNSLENICTSSIPLVSLNFSHCKKITSISAIASLTA 770

Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
           L  L++       SG         LR   +    + D  ++H+ +  SL  LNL+   ++
Sbjct: 771 LEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRINDEKIRHVSECKSLNTLNLAFCKDI 830

Query: 434 TDKTLELISGLTGLVSLNV 452
           TD T   +S +T L  LN+
Sbjct: 831 TDVT--ALSKITMLEELNL 847



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 168/366 (45%), Gaps = 39/366 (10%)

Query: 62   VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
            ++L  +D+      ++ +  +L+SL+ + C  ++D        +S L+SLS         
Sbjct: 942  LNLKYTDINGDATKNISESKSLRSLNLSHCKWVTD--------ISVLSSLS--------- 984

Query: 122  QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
                       L +L++  C  I  G  +L G + L  + I     IT  D+  LS    
Sbjct: 985  ----------TLEELNVNCCNAIRKGWESL-GKLPLLRVAILSDTNITAKDIACLSSCKK 1033

Query: 182  LKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
            L  L+   C K++D  + Y   +Q L  L ++ C      L++L  L  L +L+L     
Sbjct: 1034 LVKLKFFRCKKLSDVTVVY--KIQSLEELIVKNCSGGLKGLNALGTLPRLRFLHLRNVSG 1091

Query: 241  SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
            SD   E      SL  LN+    E+TD     L  +T+LE L+L  CG   EG+  L  L
Sbjct: 1092 SDISVESIGTSKSLVRLNIETREELTDT--TPLSNITSLEELSLRKCGNNLEGVGTLGKL 1149

Query: 300  CNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDAR 358
              L+ L L  +++  S L ++    ++ S+NL S   ++D S   ++ L++L+ LNL   
Sbjct: 1150 PRLRSLYLGLSRINDSTLYYICLSRSITSLNLASSWKLTDIS--HISKLTALEELNLRGC 1207

Query: 359  QITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLRNFKNLRSLEICGGGLTDAG-VKHI 416
                +G  AL+ L  L  L+L   R+T   G  Y+R  K+L +L +    +TDA  + +I
Sbjct: 1208 YPITSGWEALSELPRLRVLNLESTRVTTRYGGYYIRRCKSLVTLSLESCDMTDASCLANI 1267

Query: 417  KDLSSL 422
            K L  L
Sbjct: 1268 KTLEEL 1273



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 127/467 (27%), Positives = 205/467 (43%), Gaps = 41/467 (8%)

Query: 20   LTEVSLEAFRD--CALQDLCLGQYPGVNDKWMDVIA------SQGSSLLSVDLSGSD-VT 70
            L E+ L+  R+  C     CL +   +N K+ D+        S+  SL S++LS    VT
Sbjct: 916  LEELVLDHAREVCCIPSFSCLPRLRVLNLKYTDINGDATKNISESKSLRSLNLSHCKWVT 975

Query: 71   DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
            D  +  L   S L+ L+ N C  I  G  E L  L  L  ++   +  ITA+ +   +  
Sbjct: 976  DISV--LSSLSTLEELNVNCCNAIRKG-WESLGKLP-LLRVAILSDTNITAKDIACLSSC 1031

Query: 131  INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ---- 186
              LVKL   RC ++    V  K +  LE L +K C+      +K L+ L  L  L+    
Sbjct: 1032 KKLVKLKFFRCKKLSDVTVVYK-IQSLEELIVKNCS----GGLKGLNALGTLPRLRFLHL 1086

Query: 187  --ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
              +S S ++   I   K L +L +   E    T      LS + SL  L+L +C  + +G
Sbjct: 1087 RNVSGSDISVESIGTSKSLVRLNIETREELTDTTP----LSNITSLEELSLRKCGNNLEG 1142

Query: 245  CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL-DSCGIGDEGLVNLTGLCNLK 303
                 K+  L+ L LG + I D  L ++    ++ SLNL  S  + D  + +++ L  L+
Sbjct: 1143 VGTLGKLPRLRSLYLGLSRINDSTLYYICLSRSITSLNLASSWKLTD--ISHISKLTALE 1200

Query: 304  CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS----LRKLAGLSSLKSLNLDARQ 359
             L L      +SG   LS L  L  +NL  T ++       +R+     SL +L+L++  
Sbjct: 1201 ELNLRGCYPITSGWEALSELPRLRVLNLESTRVTTRYGGYYIRRCK---SLVTLSLESCD 1257

Query: 360  ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
            +TD   + L ++  L  L +   +    G + L     LR L +    +TD  ++ I+  
Sbjct: 1258 MTDA--SCLANIKTLEELHIGRCKELRWGFSPLFTLPRLRILNLICSLITDEDLREIQPP 1315

Query: 420  SSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGLRHL 465
             ++  LNLS    L D T L  I  +  L      ++R  + G R L
Sbjct: 1316 HTIEELNLSYCEELNDITPLGRIKSIKKLHLRQSHDARRPTEGFRSL 1362



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 134/500 (26%), Positives = 215/500 (43%), Gaps = 71/500 (14%)

Query: 17  SRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIH 76
           + C+  V+L    D A  D   G Y G        I ++    L++ LS       G ++
Sbjct: 96  TECIHRVTLYNAADNAFSDE--GLYEGALSSLCGRIQAKK---LTITLS-----KGGKLN 145

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL---TSLSFRRNN---------------- 117
           LK  S L+ L+    I+   G L ++  L+NL     L  R NN                
Sbjct: 146 LKRVSKLKQLE-ELRIEYPRGKLVNIISLNNLDMLKRLCLRSNNVDNNDVCHLFSVGTLE 204

Query: 118 --AIT----AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
             AIT       ++  + L NL+ L+L         +  +    KL  L++  CN ITD+
Sbjct: 205 ELAITDTMQLTNIRGISRLTNLMCLELNSTDIDDTCIGEISACAKLSKLSVSECNNITDA 264

Query: 172 DMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
              P+S L  L+ L + SC  +T  GI  L  L +L +L+L G PV   CL  L   GSL
Sbjct: 265 --TPISQLAALEELNLNSCYHIT-KGIGTLGMLLRLRMLDLSGVPVEDNCLKDLCDCGSL 321

Query: 231 FYLNLNRC-QLSD---------------DGCEKFSK-------IGSLKVLNLGFNEITDE 267
             LN++ C QL+D               +GC + ++       +  L+V ++    +++ 
Sbjct: 322 ERLNISYCIQLTDINPLSNATAIEELNLNGCRRITRGIDVVWALPKLRVFHMKDVHLSEP 381

Query: 268 CLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
            L  +    +L  ++LD+C G GD  L  L+ +  L+ L +       SG+  L  L  L
Sbjct: 382 SLDSVGTGGSLVKVSLDNCAGFGDMSL--LSSIVTLEELNIQKCADIISGVGCLGTLPYL 439

Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARIT 385
             +N+    IS      +    SL  LN+++  IT  + + AL ++  L  L L G    
Sbjct: 440 RVLNIKEVHISSLDFTGIGASKSLLQLNMES--ITGLSNVEALANILTLEKLSLHGCTDI 497

Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
           D+G   L N   L+ L++ G    +  ++ +    ++  LNLS    +T+  +  IS L 
Sbjct: 498 DAGIGCLGNLPQLKVLDLSGTNTDNESLRSLCLSQTMVSLNLSHCWKMTN--VSHISSLE 555

Query: 446 GLVSLNVSNSRITSAGLRHL 465
            L  LN+SN    +AG   L
Sbjct: 556 ALNELNLSNCIRINAGWEAL 575



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 108/425 (25%), Positives = 179/425 (42%), Gaps = 42/425 (9%)

Query: 58   SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLSFRRN 116
            +L  ++L   D   SG+  L     L+ LD     Q+ D  LE++   S  L SL+F   
Sbjct: 698  TLEELNLHYCDKVTSGMGTLGRLPQLRVLDLGR-TQVDDNSLENICTSSIPLVSLNFSHC 756

Query: 117  NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
              IT+  + A A L  L +L+++ C  +  G      L +L    +     I D  ++ +
Sbjct: 757  KKITS--ISAIASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTR-INDEKIRHV 813

Query: 177  SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
            S   +L +L ++ C  +TD  +  L  +  L  LNL+ CP     +++L  L     L++
Sbjct: 814  SECKSLNTLNLAFCKDITD--VTALSKITMLEELNLDCCPNIRKGIETLGTLPKARILSM 871

Query: 236  NRCQLSDDGCEKFSKIG---SLKVLNLGFNE-----------------ITDE-----CLV 270
              C + D   ++ S +G   SL  LNL  +                  + D      C+ 
Sbjct: 872  KECYMGDGYAQQCSILGNSKSLVKLNLERSRGRISVKALSDIATLEELVLDHAREVCCIP 931

Query: 271  HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
                L  L  LNL    I  +   N++   +L+ L LS  +   + +  LS L+ LE +N
Sbjct: 932  SFSCLPRLRVLNLKYTDINGDATKNISESKSLRSLNLSHCK-WVTDISVLSSLSTLEELN 990

Query: 331  LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGA 389
            ++           L  L  L+   L    IT   +A L+S   L  L  F   +++D   
Sbjct: 991  VNCCNAIRKGWESLGKLPLLRVAILSDTNITAKDIACLSSCKKLVKLKFFRCKKLSDVTV 1050

Query: 390  AYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
             Y    ++L  L +  C GGL   G+  +  L  L  L+L +N + +D ++E I     L
Sbjct: 1051 VY--KIQSLEELIVKNCSGGL--KGLNALGTLPRLRFLHL-RNVSGSDISVESIGTSKSL 1105

Query: 448  VSLNV 452
            V LN+
Sbjct: 1106 VRLNI 1110



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 94/190 (49%), Gaps = 16/190 (8%)

Query: 150  NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTL 208
            ++  L  LE LN++ C  IT S  + LS L  L+ L +  ++VT   G  Y++  + L  
Sbjct: 1192 HISKLTALEELNLRGCYPIT-SGWEALSELPRLRVLNLESTRVTTRYGGYYIRRCKSLVT 1250

Query: 209  LNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
            L+LE C +T A+CL ++  L  L   ++ RC+    G      +  L++LNL  + ITDE
Sbjct: 1251 LSLESCDMTDASCLANIKTLEEL---HIGRCKELRWGFSPLFTLPRLRILNLICSLITDE 1307

Query: 268  CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL------ELSDTQVGSSGLRHLS 321
             L  ++    +E LNL  C    E L ++T L  +K +      +  D +  + G R L 
Sbjct: 1308 DLREIQPPHTIEELNLSYC----EELNDITPLGRIKSIKKLHLRQSHDARRPTEGFRSLL 1363

Query: 322  GLTNLESINL 331
             L  L  ++L
Sbjct: 1364 ELPCLSWVDL 1373


>gi|326427049|gb|EGD72619.1| hypothetical protein PTSG_04354 [Salpingoeca sp. ATCC 50818]
          Length = 1165

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 100/333 (30%), Positives = 155/333 (46%), Gaps = 56/333 (16%)

Query: 157  LESLNIKWCNCITDSDMKPL-SGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
            ++ L  +    +TD+ ++ L +    L  L+I  C  +T  GIA LKG   L  L+L G 
Sbjct: 767  IQHLAFRSSVVVTDAFLRVLGTQFPTLYELEIYDCPMLTFRGIAALKGAPNLASLHLSGA 826

Query: 215  PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
              T +C+D+L +L  L + +LN  ++S    ++F++  S                     
Sbjct: 827  -FTDSCVDALMSLHPLEHFSLNGARVS---SQQFARFLSSPTA----------------- 865

Query: 275  LTNLESLNLDSCGIGDEG-LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
             T+L+SL L SC   D+G L ++ GL +L  L LS T V + G   L+ L +L S+NLS+
Sbjct: 866  -THLQSLALTSCPALDDGILPSICGLTDLGHLSLSKTPVRAVG--QLASLPHLYSLNLSY 922

Query: 334  TGISDGSLRKLA------------------------GLSSLKSLNLDAR-QITDTGLAAL 368
            T  S+  +  LA                        G  SL  L L +R    D  LA +
Sbjct: 923  TRASEREVGALAAATNMTTLGLFGLNLSSDAYAPWAGHGSLAELTLSSRDSFDDACLAHV 982

Query: 369  TSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD--LSSLTLL 425
             +LT +T LDL G  ++T  G   +   + L+SL +    LTDA + HI    L SL   
Sbjct: 983  CTLTHVTTLDLSGYYQLTPDGLKAIAAMQQLQSLSLSNTALTDAALLHIGGVGLPSLDTF 1042

Query: 426  NLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
            ++S+  ++TD       G   +  LN+S +RIT
Sbjct: 1043 DISRT-DVTDACAPAFKGFAAVARLNLSRTRIT 1074



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 165/372 (44%), Gaps = 33/372 (8%)

Query: 2    LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
            LP  +++++         L   S++AFR C +Q L       V D ++ V+ +Q  +L  
Sbjct: 736  LPETLAREVMTAAAEKETLNSKSIKAFRSCGIQHLAFRSSVVVTDAFLRVLGTQFPTLYE 795

Query: 62   VDLSGSDV-TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA-I 119
            +++    + T  G+  LK   NL SL  +     +D  ++ L  L  L   S   N A +
Sbjct: 796  LEIYDCPMLTFRGIAALKGAPNLASLHLSGA--FTDSCVDALMSLHPLEHFSL--NGARV 851

Query: 120  TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
            ++Q    F          L   T  H           L+SL +  C  + D  +  + GL
Sbjct: 852  SSQQFARF----------LSSPTATH-----------LQSLALTSCPALDDGILPSICGL 890

Query: 180  TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
            T+L  L +S + V    +  L  L  L  LNL     +   + +L+A  ++  L L    
Sbjct: 891  TDLGHLSLSKTPV--RAVGQLASLPHLYSLNLSYTRASEREVGALAAATNMTTLGLFGLN 948

Query: 240  LSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDS-CGIGDEGLVNLT 297
            LS D    ++  GSL  L L   +   D CL H+  LT++ +L+L     +  +GL  + 
Sbjct: 949  LSSDAYAPWAGHGSLAELTLSSRDSFDDACLAHVCTLTHVTTLDLSGYYQLTPDGLKAIA 1008

Query: 298  GLCNLKCLELSDTQVGSSGLRHLS--GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
             +  L+ L LS+T +  + L H+   GL +L++ ++S T ++D       G +++  LNL
Sbjct: 1009 AMQQLQSLSLSNTALTDAALLHIGGVGLPSLDTFDISRTDVTDACAPAFKGFAAVARLNL 1068

Query: 356  DARQITDTGLAA 367
               +IT+T   A
Sbjct: 1069 SRTRITNTFFHA 1080


>gi|406831321|ref|ZP_11090915.1| hypothetical protein SpalD1_06780 [Schlesneria paludicola DSM
           18645]
          Length = 785

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/246 (34%), Positives = 125/246 (50%), Gaps = 23/246 (9%)

Query: 177 SGLTNLKSLQIS------CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           +G   L++L I       CS++TD+  + L GL++L  L L G  VT+  L  ++    L
Sbjct: 541 AGTAQLRALPIVGLNLELCSQLTDATFSSLSGLKQLVALVLSGTNVTSTGLTQVAENLPL 600

Query: 231 FYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL---GFNE--ITDECLVHLKGLTNLESLNLD 284
             L L  C  ++DD C     +  L+ LNL   GF +  I+D  L  LK LT LE LNL 
Sbjct: 601 VALELELCDAINDDVCLTLGSMKRLRWLNLKKSGFEKRGISDIGLEQLKTLTELEMLNLY 660

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT------GISD 338
              + D GL++L  L  L+ L+LS   +  +G+  LS L +LE +NL FT       ++D
Sbjct: 661 GNKVTDAGLIHLQSLKRLRDLDLSLLNLNDAGIESLSPLISLERLNLMFTEGFAGPSLTD 720

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
            + R L  L  L  LNL+  ++TD+GL  L  L  L  L +   ++T+SG    R     
Sbjct: 721 RATRSLTPLQQLTWLNLNGSKLTDSGLEQLQELNQLRTLHVVRTKVTESGREKFR----- 775

Query: 399 RSLEIC 404
           R+L  C
Sbjct: 776 RALPEC 781



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 85/263 (32%), Positives = 122/263 (46%), Gaps = 27/263 (10%)

Query: 60  LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
           L ++L G+ ++D+G   L+    +  L+   C Q++D     L GL  L +L     N +
Sbjct: 529 LILNLEGARISDAGTAQLRALP-IVGLNLELCSQLTDATFSSLSGLKQLVALVLSGTN-V 586

Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
           T+ G+   A  + LV L+LE C  I+  +                  C+T   MK L  L
Sbjct: 587 TSTGLTQVAENLPLVALELELCDAINDDV------------------CLTLGSMKRLRWL 628

Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
            NLK        ++D G+  LK L +L +LNL G  VT A L  L +L  L  L+L+   
Sbjct: 629 -NLKKSGFEKRGISDIGLEQLKTLTELEMLNLYGNKVTDAGLIHLQSLKRLRDLDLSLLN 687

Query: 240 LSDDGCEKFSKIGSLKVLNLGFNE------ITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           L+D G E  S + SL+ LNL F E      +TD     L  L  L  LNL+   + D GL
Sbjct: 688 LNDAGIESLSPLISLERLNLMFTEGFAGPSLTDRATRSLTPLQQLTWLNLNGSKLTDSGL 747

Query: 294 VNLTGLCNLKCLELSDTQVGSSG 316
             L  L  L+ L +  T+V  SG
Sbjct: 748 EQLQELNQLRTLHVVRTKVTESG 770



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 84/247 (34%), Positives = 129/247 (52%), Gaps = 21/247 (8%)

Query: 240 LSDDGC---EKFSKIGSLK---VLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEG 292
           LS DG    E  S++  LK   +LNL    I+D     L+ L  +  LNL+ C  + D  
Sbjct: 508 LSADGTISSEIVSQLALLKGRLILNLEGARISDAGTAQLRALP-IVGLNLELCSQLTDAT 566

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISD------GSLRKLA 345
             +L+GL  L  L LS T V S+GL  ++    L ++ L     I+D      GS+++L 
Sbjct: 567 FSSLSGLKQLVALVLSGTNVTSTGLTQVAENLPLVALELELCDAINDDVCLTLGSMKRLR 626

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
            L+ LK    + R I+D GL  L +LT L  L+L+G ++TD+G  +L++ K LR L++  
Sbjct: 627 WLN-LKKSGFEKRGISDIGLEQLKTLTELEMLNLYGNKVTDAGLIHLQSLKRLRDLDLSL 685

Query: 406 GGLTDAGVKHIKDLSSLTLLNLS-----QNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
             L DAG++ +  L SL  LNL         +LTD+    ++ L  L  LN++ S++T +
Sbjct: 686 LNLNDAGIESLSPLISLERLNLMFTEGFAGPSLTDRATRSLTPLQQLTWLNLNGSKLTDS 745

Query: 461 GLRHLNH 467
           GL  L  
Sbjct: 746 GLEQLQE 752



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 114/251 (45%), Gaps = 28/251 (11%)

Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDD 243
           L +  ++++D+G A L+ L  +  LNLE C  +T A   SLS L  L  L L+   ++  
Sbjct: 531 LNLEGARISDAGTAQLRAL-PIVGLNLELCSQLTDATFSSLSGLKQLVALVLSGTNVTST 589

Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           G  + ++   L  L L   + I D+  + L  +  L  LNL   G    G+ ++      
Sbjct: 590 GLTQVAENLPLVALELELCDAINDDVCLTLGSMKRLRWLNLKKSGFEKRGISDI------ 643

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
                        GL  L  LT LE +NL    ++D  L  L  L  L+ L+L    + D
Sbjct: 644 -------------GLEQLKTLTELEMLNLYGNKVTDAGLIHLQSLKRLRDLDLSLLNLND 690

Query: 363 TGLAALTSLTGLTHLDLF------GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
            G+ +L+ L  L  L+L       G  +TD     L   + L  L + G  LTD+G++ +
Sbjct: 691 AGIESLSPLISLERLNLMFTEGFAGPSLTDRATRSLTPLQQLTWLNLNGSKLTDSGLEQL 750

Query: 417 KDLSSLTLLNL 427
           ++L+ L  L++
Sbjct: 751 QELNQLRTLHV 761


>gi|443723521|gb|ELU11898.1| hypothetical protein CAPTEDRAFT_102929 [Capitella teleta]
          Length = 439

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 108/298 (36%), Positives = 162/298 (54%), Gaps = 36/298 (12%)

Query: 200 LKGLQKLTLLNLEGCP-VTAACL-DSLSA-LGSLFYLNLNRCQLSDD-------GCEKFS 249
           ++G+  L  LNL GC  VT   +  +LS  L SL  LNL+ C++  D       G +K  
Sbjct: 131 VEGVPGLRSLNLSGCYNVTDVIMTHALSHDLPSLVSLNLSLCKVITDSTIACIAGHQK-- 188

Query: 250 KIGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN----- 301
               L+ L LG   +IT   L+ L  GL+NL  LNL SC  I DEG+  LTG  +     
Sbjct: 189 ---QLQELELGGCAQITTNALLLLACGLSNLRRLNLRSCCKITDEGVAYLTGQSHTVPTG 245

Query: 302 ---LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL 355
              L+ + L D Q +    L++LS G + L+S+NLSF TG++D  L  L+ + SL+ L+L
Sbjct: 246 TAMLEHIVLQDCQKITDVSLKYLSLGFSQLKSVNLSFCTGVTDSGLECLSRMPSLQELDL 305

Query: 356 DA-RQITDTGLAALTS-LTGLTHLDL-FGARITDSGAAYLRN-FKNLRSLEICGGGLTDA 411
            A   I+D G+  L   LT L+ L L F  RITD+   ++ +   +L +L +C   ++D 
Sbjct: 306 RACDGISDHGVGYLAEGLTRLSVLHLSFCDRITDTALLHISHGLIHLTALSLCDCSISDE 365

Query: 412 GVKH-IKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLN 466
           G++H I     +  LN+ Q   LTD +LELI+   T L ++++   +RIT  G++HL 
Sbjct: 366 GIQHLIGSSQDIVKLNIGQCDRLTDASLELIAQNFTQLHTIDIYGCTRITKLGVKHLR 423



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 99/303 (32%), Positives = 160/303 (52%), Gaps = 26/303 (8%)

Query: 151 LKGLMKLESLNIKWCNCITDSDM-KPLSG-LTNLKSLQIS-CSKVTDSGIAYLKGLQK-L 206
           ++G+  L SLN+  C  +TD  M   LS  L +L SL +S C  +TDS IA + G QK L
Sbjct: 131 VEGVPGLRSLNLSGCYNVTDVIMTHALSHDLPSLVSLNLSLCKVITDSTIACIAGHQKQL 190

Query: 207 TLLNLEGCP--VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFS------KIGSLKVL 257
             L L GC    T A L     L +L  LNL  C +++D+G    +        G+  + 
Sbjct: 191 QELELGGCAQITTNALLLLACGLSNLRRLNLRSCCKITDEGVAYLTGQSHTVPTGTAMLE 250

Query: 258 NLGFNE---ITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ- 311
           ++   +   ITD  L +L  G + L+S+NL  C G+ D GL  L+ + +L+ L+L     
Sbjct: 251 HIVLQDCQKITDVSLKYLSLGFSQLKSVNLSFCTGVTDSGLECLSRMPSLQELDLRACDG 310

Query: 312 VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQITDTGLAAL 368
           +   G+ +L+ GLT L  ++LSF   I+D +L  ++ GL  L +L+L    I+D G+  L
Sbjct: 311 ISDHGVGYLAEGLTRLSVLHLSFCDRITDTALLHISHGLIHLTALSLCDCSISDEGIQHL 370

Query: 369 T-SLTGLTHLDLFGA-RITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTL 424
             S   +  L++    R+TD+    + +NF  L +++I G   +T  GVKH++D   ++ 
Sbjct: 371 IGSSQDIVKLNIGQCDRLTDASLELIAQNFTQLHTIDIYGCTRITKLGVKHLRDQPHISA 430

Query: 425 LNL 427
           +N+
Sbjct: 431 INM 433



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 93/289 (32%), Positives = 146/289 (50%), Gaps = 31/289 (10%)

Query: 130 LINLVKLDLERCTRIHGGLVN-LKGLMK-LESLNIKWCNCITDSDMKPLS-GLTNLKSLQ 186
           L +LV L+L  C  I    +  + G  K L+ L +  C  IT + +  L+ GL+NL+ L 
Sbjct: 161 LPSLVSLNLSLCKVITDSTIACIAGHQKQLQELELGGCAQITTNALLLLACGLSNLRRLN 220

Query: 187 I-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
           + SC K+TD G+AYL G Q  T+      P   A L+         ++ L  CQ   D  
Sbjct: 221 LRSCCKITDEGVAYLTG-QSHTV------PTGTAMLE---------HIVLQDCQKITDVS 264

Query: 246 EKFSKIG--SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLC 300
            K+  +G   LK +NL F   +TD  L  L  + +L+ L+L +C GI D G+  L  GL 
Sbjct: 265 LKYLSLGFSQLKSVNLSFCTGVTDSGLECLSRMPSLQELDLRACDGISDHGVGYLAEGLT 324

Query: 301 NLKCLELSDT-QVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSS-LKSLNL-D 356
            L  L LS   ++  + L H+S GL +L +++L    ISD  ++ L G S  +  LN+  
Sbjct: 325 RLSVLHLSFCDRITDTALLHISHGLIHLTALSLCDCSISDEGIQHLIGSSQDIVKLNIGQ 384

Query: 357 ARQITDTGLAALTS-LTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 403
             ++TD  L  +    T L  +D++G  RIT  G  +LR+  ++ ++ +
Sbjct: 385 CDRLTDASLELIAQNFTQLHTIDIYGCTRITKLGVKHLRDQPHISAINM 433



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 148/306 (48%), Gaps = 53/306 (17%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDC--SNLQSLDFNFCIQISDGGLE 100
           + D  +  IA     L  ++L G + +T + L+ L  C  SNL+ L+   C +I+D G+ 
Sbjct: 175 ITDSTIACIAGHQKQLQELELGGCAQITTNALL-LLACGLSNLRRLNLRSCCKITDEGVA 233

Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
           +L G S         +   T   M     L ++V  D ++ T +    ++L G  +L+S+
Sbjct: 234 YLTGQS---------HTVPTGTAM-----LEHIVLQDCQKITDVSLKYLSL-GFSQLKSV 278

Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGC-PVT 217
           N+ +C  +TDS ++ LS + +L+ L + +C  ++D G+ YL +GL +L++L+L  C  +T
Sbjct: 279 NLSFCTGVTDSGLECLSRMPSLQELDLRACDGISDHGVGYLAEGLTRLSVLHLSFCDRIT 338

Query: 218 AACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGS---LKVLNLG-FNEITDECLVHL 272
              L  +S  L  L  L+L  C +SD+G +    IGS   +  LN+G  + +TD  L  +
Sbjct: 339 DTALLHISHGLIHLTALSLCDCSISDEGIQHL--IGSSQDIVKLNIGQCDRLTDASLELI 396

Query: 273 -KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
            +  T L ++++  C                       T++   G++HL    ++ +IN+
Sbjct: 397 AQNFTQLHTIDIYGC-----------------------TRITKLGVKHLRDQPHISAINM 433

Query: 332 SFTGIS 337
                S
Sbjct: 434 ELFAAS 439


>gi|198456933|ref|XP_001360491.2| GA22149 [Drosophila pseudoobscura pseudoobscura]
 gi|198135799|gb|EAL25066.2| GA22149 [Drosophila pseudoobscura pseudoobscura]
          Length = 529

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 122/374 (32%), Positives = 188/374 (50%), Gaps = 68/374 (18%)

Query: 7   SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
           S  +FN LV  R + +V + + R  +L+DL LG                  +L S++LSG
Sbjct: 193 SPSLFNCLV-RRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 234

Query: 67  S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
             +V D  L H    D  NL++LD + C QI+D  L    +HLR L N   L       I
Sbjct: 235 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLEN---LELGGCCNI 291

Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
           T  G+   A GL  L  L+L  C  I   G+ +L G         ++LE L ++ C  ++
Sbjct: 292 TNTGLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEHLGLQDCQRLS 351

Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           D  +  ++ GLT+LKS+ +S C  VTDSG+ +L  + KL  LNL  C       D++S +
Sbjct: 352 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 404

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
           G  +        L++ G    S I SL V    F ++I+D+ L H+ +GL  L SL+L+ 
Sbjct: 405 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 449

Query: 286 CGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSL 341
           C I D+G+V +   L  L+ L +   +++   GL+ L+  LTNL++I+L   T +S   +
Sbjct: 450 CQITDQGMVKIAKSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGI 509

Query: 342 RKLAGLSSLKSLNL 355
             +  L  L+ LNL
Sbjct: 510 DIIMKLPKLQKLNL 523



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 112/352 (31%), Positives = 174/352 (49%), Gaps = 58/352 (16%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
           RG+  +  LS RR+      G+ A      +G  N+  ++L      H   V+L  L   
Sbjct: 203 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLG-----HAFSVDLPNL--- 254

Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           ++L++  C  ITD+ +  ++  L NL++L++  C  +T++G+  +  GL+KL  LNL  C
Sbjct: 255 KTLDLSLCKQITDTSLGRIAQHLRNLENLELGGCCNITNTGLLLIAWGLKKLRHLNLRSC 314

Query: 215 PVTA-------ACLDSLSALGSLF--YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
              +       A     +A G+L   +L L  CQ LSD+     ++ + SLK +NL F  
Sbjct: 315 WHISDQGIGHLAGFSRETAEGNLQLEHLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 374

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
            +TD  L HL  +  LE LNL SC  I D G+  LT               G SG+    
Sbjct: 375 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTE--------------GGSGI---- 416

Query: 322 GLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLD 378
                 S+++SF   ISD +L  +A GL  L+SL+L+  QITD G+  +  SL  L +L+
Sbjct: 417 -----NSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMVKIAKSLQELENLN 471

Query: 379 LFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
           +   +RITD G   L  +  NL+++++ G   L+  G+  I  L  L  LNL
Sbjct: 472 IGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 523



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 104/326 (31%), Positives = 159/326 (48%), Gaps = 55/326 (16%)

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
           G+  L SLN+  C  + D ++       L NLK+L +S C ++TD+ +  + + L+ L  
Sbjct: 223 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLEN 282

Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
           L L GC        L     L  L +LNL  C  +SD G      IG L     GF+  T
Sbjct: 283 LELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQG------IGHLA----GFSRET 332

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLT 324
            E            +L L+  G+ D             C  LSD  +G     H++ GLT
Sbjct: 333 AE-----------GNLQLEHLGLQD-------------CQRLSDEALG-----HIAQGLT 363

Query: 325 NLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-F 380
           +L+SINLSF   ++D  L+ LA +  L+ LNL +   I+D G+A LT   +G+  LD+ F
Sbjct: 364 SLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSF 423

Query: 381 GARITDSGAAYL-RNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTL 438
             +I+D    ++ +    LRSL +    +TD G VK  K L  L  LN+ Q   +TDK L
Sbjct: 424 CDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMVKIAKSLQELENLNIGQCSRITDKGL 483

Query: 439 E-LISGLTGLVSLNVSN-SRITSAGL 462
           + L   LT L ++++   ++++S G+
Sbjct: 484 QTLAEDLTNLKTIDLYGCTQLSSKGI 509



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 112/209 (53%), Gaps = 16/209 (7%)

Query: 69  VTDSGLIHLKDCS--------NLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAI 119
           ++D G+ HL   S         L+ L    C ++SD  L H+ +GL++L S++     ++
Sbjct: 317 ISDQGIGHLAGFSRETAEGNLQLEHLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSV 376

Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESLNIKWCNCITDSDMKPLS 177
           T  G+K  A +  L +L+L  C  I   G+  L +G   + SL++ +C+ I+D  +  ++
Sbjct: 377 TDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIA 436

Query: 178 -GLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSA-LGSLFYL 233
            GL  L+SL ++  ++TD G+  + K LQ+L  LN+  C  +T   L +L+  L +L  +
Sbjct: 437 QGLYRLRSLSLNQCQITDQGMVKIAKSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTI 496

Query: 234 NLNRC-QLSDDGCEKFSKIGSLKVLNLGF 261
           +L  C QLS  G +   K+  L+ LNLG 
Sbjct: 497 DLYGCTQLSSKGIDIIMKLPKLQKLNLGL 525



 Score = 46.2 bits (108), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 104/219 (47%), Gaps = 33/219 (15%)

Query: 274 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 324
           G+  L SLNL  C       +G    V+L  L  L    C +++DT +G    +HL  L 
Sbjct: 223 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 281

Query: 325 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-------- 372
           NLE     N++ TG+    L    GL  L+ LNL +   I+D G+  L   +        
Sbjct: 282 NLELGGCCNITNTGL----LLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNL 337

Query: 373 GLTHLDLFG-ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 428
            L HL L    R++D    ++ +   +L+S  L  C   +TD+G+KH+  +  L  LNL 
Sbjct: 338 QLEHLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 396

Query: 429 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL 465
              N++D  +  L  G +G+ SL+VS   +I+   L H+
Sbjct: 397 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHI 435


>gi|347547841|ref|YP_004854169.1| putative internalin A [Listeria ivanovii subsp. ivanovii PAM 55]
 gi|346980912|emb|CBW84831.1| Putative internalin A [Listeria ivanovii subsp. ivanovii PAM 55]
          Length = 798

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 123/388 (31%), Positives = 177/388 (45%), Gaps = 60/388 (15%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           +D S + +TD  L  L + + L SL  N   QI+D  L  L+ L++LT L+   N     
Sbjct: 103 LDFSYNQITD--LTPLANLTKLTSLVMNNN-QIAD--LTPLQNLTSLTELTLFYNKITDV 157

Query: 122 QGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
             +     L NL   D E    T I G L NL+GL           N +TD  +KPL+ L
Sbjct: 158 APLANLTNLTNLAITDNEISDVTPI-GNLTNLEGL--------SIGNKVTD--IKPLANL 206

Query: 180 TNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           T L+ L +S +K+TD S +A L  LQ L+L N +      + L  L  L +L  L+L   
Sbjct: 207 TKLERLNLSRNKITDISPVAKLINLQSLSLDNNQ-----FSDLTPLGILTNLTELSLYSN 261

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
            LSD G    + + +LK LNL  N+I++  L  +  LTNL  LNL +  I D  L  ++ 
Sbjct: 262 HLSDIGT--LASLTNLKKLNLMDNQISN--LAPISNLTNLTDLNLSTNQISD--LKPISN 315

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS------------------ 340
           L NL  L++   Q+    +  +S L NLE + L    ISD S                  
Sbjct: 316 LTNLTVLQVPTNQL--EDISPISSLPNLEFLTLYTNQISDLSPLENLTKLKQLFFYDNKV 373

Query: 341 --LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF--- 395
             +  +A L+SL+ L+    QI+D  L  L  LT LT L L   ++T     Y  N    
Sbjct: 374 SDVSPIANLTSLQELSAGTNQISD--LTPLAKLTRLTQLGLDKQKVTSQPVKYQSNLVVP 431

Query: 396 ---KNLRSLEICGGGLTDAGVKHIKDLS 420
              KN+    I    ++D G     D++
Sbjct: 432 NAVKNVTGALINPATISDNGTYTNPDIT 459



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 137/294 (46%), Gaps = 52/294 (17%)

Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
            + +T +D   L G+T+L++ +   + +  +G+ YL  +   T L+     +T   L  L
Sbjct: 67  SDTVTQTD---LDGITSLEADRKGITSI--AGVEYLNNV---TQLDFSYNQITD--LTPL 116

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
           + L  L  L +N  Q++D        + SL  L L +N+ITD  +  L  LTNL +L   
Sbjct: 117 ANLTKLTSLVMNNNQIAD--LTPLQNLTSLTELTLFYNKITD--VAPLANLTNLTNL--- 169

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
              I D  + ++T + NL  LE        + ++ L+ LT LE +NLS   I+D  +  +
Sbjct: 170 --AITDNEISDVTPIGNLTNLEGLSIGNKVTDIKPLANLTKLERLNLSRNKITD--ISPV 225

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
           A L +L+SL+LD  Q +D  L  L  LT LT L L+   ++D G   L +  NL+ L + 
Sbjct: 226 AKLINLQSLSLDNNQFSD--LTPLGILTNLTELSLYSNHLSDIGT--LASLTNLKKLNLM 281

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
              +++                           L  IS LT L  LN+S ++I+
Sbjct: 282 DNQISN---------------------------LAPISNLTNLTDLNLSTNQIS 308



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 128/263 (48%), Gaps = 35/263 (13%)

Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
           +A L G+  L +    G  V AA + + + + +LF         +D    +  K      
Sbjct: 14  LAILVGVGGLYVATSNGTNVEAATISNPTPINTLF---------TDPALAEVVKT----- 59

Query: 257 LNLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
            +LG   ++D      L G+T+LE+   D  GI    +  +  L N+  L+ S  Q+  +
Sbjct: 60  -DLGKATVSDTVTQTDLDGITSLEA---DRKGI--TSIAGVEYLNNVTQLDFSYNQI--T 111

Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
            L  L+ LT L S+ ++   I+D  L  L  L+SL  L L   +ITD  +A L +LT LT
Sbjct: 112 DLTPLANLTKLTSLVMNNNQIAD--LTPLQNLTSLTELTLFYNKITD--VAPLANLTNLT 167

Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
           +L +    I+D     + N  NL  L I G  +TD  +K + +L+ L  LNLS+N  +TD
Sbjct: 168 NLAITDNEISD--VTPIGNLTNLEGLSI-GNKVTD--IKPLANLTKLERLNLSRN-KITD 221

Query: 436 KTLELISGLTGLVSLNVSNSRIT 458
             +  ++ L  L SL++ N++ +
Sbjct: 222 --ISPVAKLINLQSLSLDNNQFS 242


>gi|431930507|ref|YP_007243553.1| TIR domain-containing protein [Thioflavicoccus mobilis 8321]
 gi|431828810|gb|AGA89923.1| TIR domain-containing protein [Thioflavicoccus mobilis 8321]
          Length = 1283

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 115/372 (30%), Positives = 160/372 (43%), Gaps = 79/372 (21%)

Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD------------- 194
           L NL  L  L +L    C+    +D+ PL+GLTNL++L   C+ VTD             
Sbjct: 108 LSNLGFLAGLTALQYLKCSSTQVADLTPLAGLTNLQALDCGCTPVTDLTPLAGLTNLRSL 167

Query: 195 ----SGIAYLKGLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSD------- 242
               + +A L+ L  LT L    C  T  A L  L+ L  L +L+    +++D       
Sbjct: 168 DCAYTPVAGLEPLADLTTLKSLDCRHTRVADLAPLAGLTELQFLDCGDTRVADLEPVASL 227

Query: 243 --------DGCE-----KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
                    G         + + +L+ L+ GF ++ D  L  L  LTNL+SL+  S  + 
Sbjct: 228 ANLQSLDCGGTRVVDLTPLAGLANLQALDCGFTQVAD--LAPLASLTNLQSLDCRSAPVT 285

Query: 290 DEG--------------------LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
           D G                    L  L GL NL  L   +T V    L  L+ + NL+S+
Sbjct: 286 DLGPLASLGNLQSLICQFTPVADLAPLAGLTNLLSLNCWNTPV--IDLAPLASIGNLQSL 343

Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
           N S T ++D  L  LAGL++L+SL      +TD  LA L  LT L  LD  G  + D G 
Sbjct: 344 NCSSTPVAD--LASLAGLTNLRSLECAGSPVTD--LAPLAGLTNLRSLDCEGTPVADLGP 399

Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN--CNLTD-KTLELISGLTG 446
             L N  NLRSL        D G   + DL+ L  L   Q+  C  T    L  ++ L  
Sbjct: 400 --LINLTNLRSL--------DCGFTRVTDLAPLAGLTNLQSLICRQTPVADLAPLAALNN 449

Query: 447 LVSLNVSNSRIT 458
           L S    N+RIT
Sbjct: 450 LQSFACGNTRIT 461



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 167/345 (48%), Gaps = 53/345 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L S+D + + V  +GL  L D + L+SLD     +++D     L  L+ LT L F   
Sbjct: 162 TNLRSLDCAYTPV--AGLEPLADLTTLKSLDCRH-TRVAD-----LAPLAGLTELQFLDC 213

Query: 117 NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
                  ++  A L NL  LD   C  TR+   L  L GL  L++L+   C     +D+ 
Sbjct: 214 GDTRVADLEPVASLANLQSLD---CGGTRVVD-LTPLAGLANLQALD---CGFTQVADLA 266

Query: 175 PLSGLTNLKSLQISCSKVTDSG--------------------IAYLKGLQKLTLLNLEGC 214
           PL+ LTNL+SL    + VTD G                    +A L GL  L  LN    
Sbjct: 267 PLASLTNLQSLDCRSAPVTDLGPLASLGNLQSLICQFTPVADLAPLAGLTNLLSLNCWNT 326

Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
           PV    L  L+++G+L  LN +   ++D      + + +L+ L    + +TD  L  L G
Sbjct: 327 PVID--LAPLASIGNLQSLNCSSTPVAD--LASLAGLTNLRSLECAGSPVTD--LAPLAG 380

Query: 275 LTNLESLNLDSCGIGDEG-LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
           LTNL SL+ +   + D G L+NLT   NL+ L+   T+V  + L  L+GLTNL+S+    
Sbjct: 381 LTNLRSLDCEGTPVADLGPLINLT---NLRSLDCGFTRV--TDLAPLAGLTNLQSLICRQ 435

Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
           T ++D  L  LA L++L+S      +ITD  L  L  L  +  LD
Sbjct: 436 TPVAD--LAPLAALNNLQSFACGNTRITD--LTPLADLANMESLD 476


>gi|290978509|ref|XP_002671978.1| predicted protein [Naegleria gruberi]
 gi|284085551|gb|EFC39234.1| predicted protein [Naegleria gruberi]
          Length = 284

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 120/254 (47%), Gaps = 26/254 (10%)

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           K +S L NL +L I  S++ + G+  +  L+ LT LN+    +                 
Sbjct: 57  KSISDLKNLTTLDIGYSRIGNEGLESIGQLENLTRLNIRSNNIGL--------------- 101

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
                       E    + +L  L++G N I +E +  +  LT L SL +D   I +EG 
Sbjct: 102 -----------VEPIINLKTLTALDIGENSIGNEGVKSISKLTELTSLFIDYDDINEEGA 150

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
             L  L NL  L+L+ + +G  G + +   T L+ + LS   IS+  +  L+ L+ L  L
Sbjct: 151 KYLCELPNLTILDLTGSNIGDEGAKFIGQSTKLKHLFLSLADISNVGVNYLSSLNELVDL 210

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
            L    I D GL  L+SL  L +L++ G +ITD G  ++R  +NL+ + I    LT  G 
Sbjct: 211 ILSLNDIGDEGLKHLSSLKMLNYLNVSGNQITDEGVVFIREMENLKRISITNNLLTAVGE 270

Query: 414 KHIKDLSSLTLLNL 427
             I+++S  T L+L
Sbjct: 271 NLIQEMSITTDLDL 284



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 118/254 (46%), Gaps = 32/254 (12%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
           + D  NL +LD  +  +I + GLE +  L NLT L+ R NN             I LV+ 
Sbjct: 59  ISDLKNLTTLDIGYS-RIGNEGLESIGQLENLTRLNIRSNN-------------IGLVE- 103

Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
                      ++NLK L  L+       N I +  +K +S LT L SL I    + + G
Sbjct: 104 ----------PIINLKTLTALDI----GENSIGNEGVKSISKLTELTSLFIDYDDINEEG 149

Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
             YL  L  LT+L+L G  +       +     L +L L+   +S+ G    S +  L  
Sbjct: 150 AKYLCELPNLTILDLTGSNIGDEGAKFIGQSTKLKHLFLSLADISNVGVNYLSSLNELVD 209

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD---TQVG 313
           L L  N+I DE L HL  L  L  LN+    I DEG+V +  + NLK + +++   T VG
Sbjct: 210 LILSLNDIGDEGLKHLSSLKMLNYLNVSGNQITDEGVVFIREMENLKRISITNNLLTAVG 269

Query: 314 SSGLRHLSGLTNLE 327
            + ++ +S  T+L+
Sbjct: 270 ENLIQEMSITTDLD 283



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 110/209 (52%), Gaps = 4/209 (1%)

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI-TDECLVHLKGLTNLESL 281
           S+S L +L  L++   ++ ++G E   ++ +L  LN+  N I   E +++LK LT   +L
Sbjct: 58  SISDLKNLTTLDIGYSRIGNEGLESIGQLENLTRLNIRSNNIGLVEPIINLKTLT---AL 114

Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
           ++    IG+EG+ +++ L  L  L +    +   G ++L  L NL  ++L+ + I D   
Sbjct: 115 DIGENSIGNEGVKSISKLTELTSLFIDYDDINEEGAKYLCELPNLTILDLTGSNIGDEGA 174

Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
           + +   + LK L L    I++ G+  L+SL  L  L L    I D G  +L + K L  L
Sbjct: 175 KFIGQSTKLKHLFLSLADISNVGVNYLSSLNELVDLILSLNDIGDEGLKHLSSLKMLNYL 234

Query: 402 EICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
            + G  +TD GV  I+++ +L  ++++ N
Sbjct: 235 NVSGNQITDEGVVFIREMENLKRISITNN 263



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 104/213 (48%), Gaps = 17/213 (7%)

Query: 262 NEITDECLVHLKGLTNL---------ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
           NEI+ + L   K L  L         ES+ LD  G       +++ L NL  L++  +++
Sbjct: 21  NEISSDFLKEFKYLRELTIIRNMAKHESI-LDGVGRAK----SISDLKNLTTLDIGYSRI 75

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
           G+ GL  +  L NL  +N+    I  G +  +  L +L +L++    I + G+ +++ LT
Sbjct: 76  GNEGLESIGQLENLTRLNIRSNNI--GLVEPIINLKTLTALDIGENSIGNEGVKSISKLT 133

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
            LT L +    I + GA YL    NL  L++ G  + D G K I   + L  L LS   +
Sbjct: 134 ELTSLFIDYDDINEEGAKYLCELPNLTILDLTGSNIGDEGAKFIGQSTKLKHLFLSL-AD 192

Query: 433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           +++  +  +S L  LV L +S + I   GL+HL
Sbjct: 193 ISNVGVNYLSSLNELVDLILSLNDIGDEGLKHL 225


>gi|315301494|ref|ZP_07872641.1| internalin A, partial [Listeria ivanovii FSL F6-596]
 gi|313630136|gb|EFR98122.1| internalin A [Listeria ivanovii FSL F6-596]
          Length = 759

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 126/390 (32%), Positives = 182/390 (46%), Gaps = 64/390 (16%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           ++ S + +TD  L  L + S L SL  N   Q++D  L  L+ L++LT L+   N  IT 
Sbjct: 103 LNFSYNQITD--LTPLANLSKLTSLVMNNN-QVAD--LTPLQNLTSLTDLTLFYN-KIT- 155

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGG----LVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
             +   A L NL  L       I G     L  +  L  LE+L+I   N +TD  +KPL 
Sbjct: 156 -DVTPLANLTNLTTL------AITGNEISDLTPIGSLTNLEALSI--GNQVTD--IKPLD 204

Query: 178 GLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
            LTNL+ L +S +K+TD S +A L  LQ LTL N +   +T      L  L +L  L+L 
Sbjct: 205 KLTNLEQLNLSDNKITDISPVAKLINLQSLTLDNNQFSDLTP-----LGILTNLTELSLY 259

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
              LSD G    + + +LK LNL  N+I++  L  +  LTNL  LN+ +  I D  L  +
Sbjct: 260 SNHLSDIGT--LASLTNLKKLNLMDNQISN--LAPISNLTNLTDLNVSTNQISD--LKPI 313

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS---------------- 340
           + L NL  L++   QV    +  +S LTNL+ + L    ISD S                
Sbjct: 314 SNLTNLTVLQVPTNQV--EDISPISSLTNLDFLTLYSNQISDISPLENLTKLKQLFFYDN 371

Query: 341 ----LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF- 395
               +  LA L++L+ L+    QI+D  L  L  LT LT L L   ++T     Y  N  
Sbjct: 372 KVSDVSPLANLTTLQELSAGTNQISD--LTPLAKLTRLTQLGLDKQKVTSQPVKYQSNIV 429

Query: 396 -----KNLRSLEICGGGLTDAGVKHIKDLS 420
                KN+    I    ++D G     D++
Sbjct: 430 VPNAVKNVTGALINPATISDNGTYTNPDIT 459



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 138/294 (46%), Gaps = 52/294 (17%)

Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
            + +T +D   L G+T+L++ +     +  +G+ YL  +   T LN     +T   L  L
Sbjct: 67  SDTVTQTD---LDGITSLEADRNVIKSI--AGVEYLNNV---TQLNFSYNQITD--LTPL 116

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
           + L  L  L +N  Q++D        + SL  L L +N+ITD  +  L  LTNL +L + 
Sbjct: 117 ANLSKLTSLVMNNNQVAD--LTPLQNLTSLTDLTLFYNKITD--VTPLANLTNLTTLAIT 172

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
              I D  L  +  L NL+ L + + QV  + ++ L  LTNLE +NLS   I+D  +  +
Sbjct: 173 GNEISD--LTPIGSLTNLEALSIGN-QV--TDIKPLDKLTNLEQLNLSDNKITD--ISPV 225

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
           A L +L+SL LD  Q +D  L  L  LT LT L L+   ++D G   L +  NL+ L + 
Sbjct: 226 AKLINLQSLTLDNNQFSD--LTPLGILTNLTELSLYSNHLSDIGT--LASLTNLKKLNLM 281

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
              +++                           L  IS LT L  LNVS ++I+
Sbjct: 282 DNQISN---------------------------LAPISNLTNLTDLNVSTNQIS 308


>gi|427735495|ref|YP_007055039.1| Leucine Rich Repeat (LRR)-containing protein [Rivularia sp. PCC
           7116]
 gi|427370536|gb|AFY54492.1| Leucine Rich Repeat (LRR)-containing protein [Rivularia sp. PCC
           7116]
          Length = 396

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 102/311 (32%), Positives = 161/311 (51%), Gaps = 41/311 (13%)

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           SD+KPLSGLTNL ++ +  +K++D  +  L  L  LT LN+ G  ++   +  L++L +L
Sbjct: 84  SDLKPLSGLTNLTNIDLWGNKISD--VKPLVNLTNLTNLNIGGNKISD--VKPLASLTNL 139

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
             L+L   ++SD      + + +L  L++  N+I+D  +  L+ L NL  L + S  I D
Sbjct: 140 TNLDLGGNKISD--VTPLASLTNLIRLDVYSNQISD--INSLENLNNLTFLRVGSNRIVD 195

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
             +       NL  L L + Q+  S +R LS L NL  +NL    ISD  ++ +A L+SL
Sbjct: 196 --VKQFANFTNLTELWLEENQI--SDVRPLSSLNNLTKLNLMSNQISD--IKPIASLNSL 249

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD--------------------SGAA 390
            SL+LD  QI+D  + AL++LT LT L L   +I +                    S   
Sbjct: 250 NSLDLDKNQISD--IEALSNLTNLTTLGLDRNQIINIKPLSNLTKLRWLFLRQNQISDIK 307

Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
            L +  NLR LE+    + D  VK + +L+ L  LNLS N  +T+  ++ ++ LT LV+ 
Sbjct: 308 PLSSLTNLRWLELKSNKIRD--VKPLTNLAKLRNLNLSSN-QITN--VQSLANLTNLVNF 362

Query: 451 NVSNSRITSAG 461
           NV  + I +  
Sbjct: 363 NVEENPINTKS 373



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 103/321 (32%), Positives = 162/321 (50%), Gaps = 32/321 (9%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           SSL  + L    ++D  L  L   +NL ++D  +  +ISD  ++ L  L+NLT+L+   N
Sbjct: 71  SSLTELRLLTKQISD--LKPLSGLTNLTNIDL-WGNKISD--VKPLVNLTNLTNLNIGGN 125

Query: 117 NAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
                  +K  A L NL  LDL   + + +   L +L  L++L+     + N I  SD+ 
Sbjct: 126 ---KISDVKPLASLTNLTNLDLGGNKISDV-TPLASLTNLIRLDV----YSNQI--SDIN 175

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
            L  L NL  L++  +++ D  +        LT L LE   ++   +  LS+L +L  LN
Sbjct: 176 SLENLNNLTFLRVGSNRIVD--VKQFANFTNLTELWLEENQISD--VRPLSSLNNLTKLN 231

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           L   Q+SD   +  + + SL  L+L  N+I+D  +  L  LTNL +L LD   I +  + 
Sbjct: 232 LMSNQISD--IKPIASLNSLNSLDLDKNQISD--IEALSNLTNLTTLGLDRNQIIN--IK 285

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
            L+ L  L+ L L   Q+  S ++ LS LTNL  + L    I D  ++ L  L+ L++LN
Sbjct: 286 PLSNLTKLRWLFLRQNQI--SDIKPLSSLTNLRWLELKSNKIRD--VKPLTNLAKLRNLN 341

Query: 355 LDARQITDT-GLAALTSLTGL 374
           L + QIT+   LA LT+L   
Sbjct: 342 LSSNQITNVQSLANLTNLVNF 362



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 137/284 (48%), Gaps = 47/284 (16%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L ++DL G+ ++D  +  L   +NL  LD  +  QISD     +  L NL +L+F R 
Sbjct: 137 TNLTNLDLGGNKISD--VTPLASLTNLIRLDV-YSNQISD-----INSLENLNNLTFLRV 188

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
            +     +K FA   NL +L LE                          N I  SD++PL
Sbjct: 189 GSNRIVDVKQFANFTNLTELWLEE-------------------------NQI--SDVRPL 221

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           S L NL  L +  ++++D  I  +  L  L  L+L+   ++   +++LS L +L  L L+
Sbjct: 222 SSLNNLTKLNLMSNQISD--IKPIASLNSLNSLDLDKNQISD--IEALSNLTNLTTLGLD 277

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
           R Q+ +   +  S +  L+ L L  N+I+D  +  L  LTNL  L L S  I D  +  L
Sbjct: 278 RNQIIN--IKPLSNLTKLRWLFLRQNQISD--IKPLSSLTNLRWLELKSNKIRD--VKPL 331

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           T L  L+ L LS  Q+  + ++ L+ LTNL + N+    I+  S
Sbjct: 332 TNLAKLRNLNLSSNQI--TNVQSLANLTNLVNFNVEENPINTKS 373



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 15/170 (8%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           QISD  ++ +  L++L SL   +N       ++A + L NL  L L+R       ++N+K
Sbjct: 236 QISD--IKPIASLNSLNSLDLDKN---QISDIEALSNLTNLTTLGLDR-----NQIINIK 285

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
            L  L  L   +      SD+KPLS LTNL+ L++  +K+ D  +  L  L KL  LNL 
Sbjct: 286 PLSNLTKLRWLFLRQNQISDIKPLSSLTNLRWLELKSNKIRD--VKPLTNLAKLRNLNLS 343

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE-KFSKIGSLKVLNLGF 261
              +T   + SL+ L +L   N+    ++   C  + +K GS K+ +  F
Sbjct: 344 SNQITN--VQSLANLTNLVNFNVEENPINTKSCPGRSTKCGSTKLKHRTF 391


>gi|440802686|gb|ELR23615.1| leucine rich repeat domain containing protein, partial
           [Acanthamoeba castellanii str. Neff]
          Length = 431

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 123/404 (30%), Positives = 184/404 (45%), Gaps = 26/404 (6%)

Query: 2   LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
           LP ++ ++I   L  +  LT  +LE F+   ++ L L     V D W+DV+    SSL  
Sbjct: 29  LPIEVIERILLYLHRTERLTLEALEFFKAFPVETLFLSNIRAVEDTWLDVLKGY-SSLTY 87

Query: 62  VDLSGS-DVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNA 118
           +DLS S  +TD+GL   LK    L+SL  + C +I+D GL  L     NL  +       
Sbjct: 88  LDLSNSYRITDTGLAECLKCMPQLRSLFVDRCKRITDAGLAPLGTHCPNLRRVHVG-GTM 146

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   + A   L +L  + +   TR       L  L+K +     W     + D   +  
Sbjct: 147 ITYYALAALNSLEDLQDVSVN-GTRFPDK--ALYTLLKRKEAPDSWA----EEDYGEVRQ 199

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGL-QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN- 236
           LT+    Q S + V D G+  LKGL   L  LNL   P  A     L +L SL +L+++ 
Sbjct: 200 LTDF---QASRTLVRDDGVRLLKGLGASLHTLNLAFNPGIADW-SFLGSLASLTHLDISL 255

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL-VN 295
               +D       K+ SL +LNL   E+TDE +  L  L+ L SL++    I    L   
Sbjct: 256 NVGFTDQFAADVGKLSSLTLLNLSKTELTDEGIPALMELSQLRSLDVGKTAITHRALGPG 315

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG-LSSLKSLN 354
           L  L NL  L L  T VG    R+L+ L  L S        + G L    G    L +L+
Sbjct: 316 LAKLPNLTALSLPYTNVGGKFSRYLTVLHRLTSFK------TTGLLELAKGRYPHLTALD 369

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
           +   Q+TD+GLA +  L  L + +++  ++T+ GA  ++    L
Sbjct: 370 VGCDQLTDSGLAHIGELAALRNFNMWNTKVTNQGAELVQQLTGL 413



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 105/356 (29%), Positives = 163/356 (45%), Gaps = 34/356 (9%)

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVN-LKGLMKLESLNIKWCNCITDSDMK 174
            A+    +    G  +L  LDL    RI   GL   LK + +L SL +  C  ITD+ + 
Sbjct: 69  RAVEDTWLDVLKGYSSLTYLDLSNSYRITDTGLAECLKCMPQLRSLFVDRCKRITDAGLA 128

Query: 175 PL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKL----------------TLLNLEGCPVT 217
           PL +   NL+ + +  + +T   +A L  L+ L                TLL  +  P +
Sbjct: 129 PLGTHCPNLRRVHVGGTMITYYALAALNSLEDLQDVSVNGTRFPDKALYTLLKRKEAPDS 188

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG-SLKVLNLGFNE-ITDECLV-HLKG 274
            A  D    +  L     +R  + DDG      +G SL  LNL FN  I D   +  L  
Sbjct: 189 WAEED-YGEVRQLTDFQASRTLVRDDGVRLLKGLGASLHTLNLAFNPGIADWSFLGSLAS 247

Query: 275 LTNLE-SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
           LT+L+ SLN+   G  D+   ++  L +L  L LS T++   G+  L  L+ L S+++  
Sbjct: 248 LTHLDISLNV---GFTDQFAADVGKLSSLTLLNLSKTELTDEGIPALMELSQLRSLDVGK 304

Query: 334 TGISDGSLRK-LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
           T I+  +L   LA L +L +L+L    +       LT L  LT     G      G    
Sbjct: 305 TAITHRALGPGLAKLPNLTALSLPYTNVGGKFSRYLTVLHRLTSFKTTGLLELAKG---- 360

Query: 393 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
             + +L +L++    LTD+G+ HI +L++L   N+  N  +T++  EL+  LTGLV
Sbjct: 361 -RYPHLTALDVGCDQLTDSGLAHIGELAALRNFNM-WNTKVTNQGAELVQQLTGLV 414


>gi|270010132|gb|EFA06580.1| hypothetical protein TcasGA2_TC009492 [Tribolium castaneum]
          Length = 474

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 108/322 (33%), Positives = 162/322 (50%), Gaps = 30/322 (9%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI------HGGLVNLKGLMK 156
           RG+  +  LS R++     QG+       NL  L+L  C  +      H  + +   L +
Sbjct: 156 RGIKRVQVLSLRKSLRDVIQGIP------NLESLNLRGCYNVGDVGISHAFVADSPTLTE 209

Query: 157 LESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEG 213
           L+   +  C  +TD+ +  ++  L NL+ L++  CS VT+SG+  +  GL+KL  LNL  
Sbjct: 210 LD---LSLCKQVTDTSLTRIAQHLKNLEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRS 266

Query: 214 C-PVTAACLDSL-SALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECL 269
           C  V    +  L S   SL +L L  CQ LSD+  +  + + SL  +NL F   ITD  L
Sbjct: 267 CWHVGDQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGL 326

Query: 270 VHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTN 325
            HL  +TNL  LNL SC  I D G+  L  G   +  L++S   ++G   L H+S GL N
Sbjct: 327 KHLAKMTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFN 386

Query: 326 LESINLSFTGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG- 381
           L ++ +S   +SD  L K+A  L  L++LN+    ++TD GL  +  SL  L  +DL+G 
Sbjct: 387 LRNLLMSACQLSDEGLAKIANSLHDLETLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGC 446

Query: 382 ARITDSGAAYLRNFKNLRSLEI 403
            RIT  G   +     L  L +
Sbjct: 447 TRITTVGLERIMKLPQLSVLNL 468



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 96/284 (33%), Positives = 160/284 (56%), Gaps = 18/284 (6%)

Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRC-QLSDDGCEKFSK-IGSL 254
           ++G+  L  LNL GC        S + +    +L  L+L+ C Q++D    + ++ + +L
Sbjct: 174 IQGIPNLESLNLRGCYNVGDVGISHAFVADSPTLTELDLSLCKQVTDTSLTRIAQHLKNL 233

Query: 255 KVLNLG-FNEITDECLVHLK-GLTNLESLNLDSCG-IGDEGLVNL-TGLCNLKCLELSDT 310
           +VL LG  + +T+  L+ +  GL  L+ LNL SC  +GD+G+ +L +G  +L+ L L D 
Sbjct: 234 EVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVGDQGIQHLASGNPSLEHLGLQDC 293

Query: 311 Q-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAA 367
           Q +    L+H +GLT+L SINLSF   I+D  L+ LA +++L+ LNL +   I+DTG+A 
Sbjct: 294 QKLSDEALKHATGLTSLISINLSFCVSITDSGLKHLAKMTNLRELNLRSCDNISDTGMAF 353

Query: 368 LTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIKD-LSSLT 423
           L    + ++ LD+ F  +I D    ++ +   NLR+L +    L+D G+  I + L  L 
Sbjct: 354 LAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRNLLMSACQLSDEGLAKIANSLHDLE 413

Query: 424 LLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHL 465
            LN+ Q   +TDK L  I+  L  L  +++   +RIT+ GL  +
Sbjct: 414 TLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCTRITTVGLERI 457



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 105/199 (52%), Gaps = 7/199 (3%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
           V D+ +  +AS   SL  + L     ++D  L H    ++L S++ +FC+ I+D GL+HL
Sbjct: 270 VGDQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLKHL 329

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNL-KGLMKLES 159
             ++NL  L+ R  + I+  GM   A G   +  LD+  C +I    LV++ +GL  L +
Sbjct: 330 AKMTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRN 389

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-V 216
           L +  C    +   K  + L +L++L I  CS+VTD G+  + + L +L  ++L GC  +
Sbjct: 390 LLMSACQLSDEGLAKIANSLHDLETLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCTRI 449

Query: 217 TAACLDSLSALGSLFYLNL 235
           T   L+ +  L  L  LNL
Sbjct: 450 TTVGLERIMKLPQLSVLNL 468


>gi|410907724|ref|XP_003967341.1| PREDICTED: F-box/LRR-repeat protein 14-like [Takifugu rubripes]
          Length = 403

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 110/329 (33%), Positives = 165/329 (50%), Gaps = 36/329 (10%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-----GLINLVKLDLERCTRIHGGLVNLKGLMKL 157
           RG+  +  LS RR+ +   QGM         G  NL    L        G   ++ +  L
Sbjct: 71  RGIKKVQILSLRRSLSYVIQGMPHIESLNLCGCFNLTDSGL--------GHAFVQDIPSL 122

Query: 158 ESLNIKWCNCITDSDM-KPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
             LN+  C  ITDS + K    L NL+ L++  CS +T++G+  +  GL +L  LNL  C
Sbjct: 123 RVLNLSLCKQITDSSLGKIAEYLKNLEVLELGGCSNITNTGLLLVAWGLHRLKSLNLRSC 182

Query: 215 -PVTAACLDSLSALG--------SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
             V+   +  LS +         SL  L L  CQ L+D   +  SK +  LKVLNL F  
Sbjct: 183 RHVSDVGIGHLSGMTRSAAEGCLSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCG 242

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
            I+D  ++HL  +T+L SLNL SC  I D G+++L  G   L  L++S   ++G   L +
Sbjct: 243 GISDVGMIHLSHMTHLCSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKIGDQSLAY 302

Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLT 375
           ++ GL  L+S++L    ISD  + R +  +  LK+LN+    +ITD GL  +   LT LT
Sbjct: 303 IAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCGRITDKGLELIADHLTQLT 362

Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEI 403
            +DL+G  +IT  G   +     L+ L +
Sbjct: 363 GIDLYGCTKITKRGLERITQLPCLKVLNL 391



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 102/316 (32%), Positives = 170/316 (53%), Gaps = 50/316 (15%)

Query: 176 LSGLTNLKSLQI-SCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           + G+ +++SL +  C  +TDSG+  A+++ +  L +LNL  C                  
Sbjct: 89  IQGMPHIESLNLCGCFNLTDSGLGHAFVQDIPSLRVLNLSLCK----------------- 131

Query: 233 LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GI 288
                 Q++D    K ++ + +L+VL LG  + IT+  L+ +  GL  L+SLNL SC  +
Sbjct: 132 ------QITDSSLGKIAEYLKNLEVLELGGCSNITNTGLLLVAWGLHRLKSLNLRSCRHV 185

Query: 289 GDEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-IS 337
            D G+ +L+G+         +L+ L L D Q +    L+H+S GL  L+ +NLSF G IS
Sbjct: 186 SDVGIGHLSGMTRSAAEGCLSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCGGIS 245

Query: 338 DGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL- 392
           D  +  L+ ++ L SLNL +   I+DTG+   A+ SL  L+ LD+ F  +I D   AY+ 
Sbjct: 246 DVGMIHLSHMTHLCSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKIGDQSLAYIA 304

Query: 393 RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSL 450
           +    L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  LT L  +
Sbjct: 305 QGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCGRITDKGLELIADHLTQLTGI 364

Query: 451 NVSN-SRITSAGLRHL 465
           ++   ++IT  GL  +
Sbjct: 365 DLYGCTKITKRGLERI 380



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 163/307 (53%), Gaps = 26/307 (8%)

Query: 81  SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLD 137
            +++SL+   C  ++D GL H  ++ + +L  L+      IT   +   A  L NL  L+
Sbjct: 93  PHIESLNLCGCFNLTDSGLGHAFVQDIPSLRVLNLSLCKQITDSSLGKIAEYLKNLEVLE 152

Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLKSLQI 187
           L  C+ I   G L+   GL +L+SLN++ C  ++D  +  LSG+T        +L+ L +
Sbjct: 153 LGGCSNITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGCLSLEKLTL 212

Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
             C K+TD  + ++ KGL KL +LNL  C  ++   +  LS +  L  LNL  C  +SD 
Sbjct: 213 QDCQKLTDLSLKHVSKGLNKLKVLNLSFCGGISDVGMIHLSHMTHLCSLNLRSCDNISDT 272

Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-G 298
           G    + +GSL++  L++ F ++I D+ L ++ +GL  L+SL+L SC I D+G+  +   
Sbjct: 273 GIMHLA-MGSLRLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQ 331

Query: 299 LCNLKCLELSDT-QVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 355
           +  LK L +    ++   GL  ++  LT L  I+L   T I+   L ++  L  LK LNL
Sbjct: 332 MHELKTLNIGQCGRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNL 391

Query: 356 DARQITD 362
              Q+T+
Sbjct: 392 GLWQMTE 398



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 29/204 (14%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           +TD  L H+ K  + L+ L+ +FC  ISD G+ HL  +++L SL+ R  + I+  G+   
Sbjct: 218 LTDLSLKHVSKGLNKLKVLNLSFCGGISDVGMIHLSHMTHLCSLNLRSCDNISDTGIMHL 277

Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           A G + L  LD+  C +I    +    +GL +L+SL++  C+   D   + +  +  LK+
Sbjct: 278 AMGSLRLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKT 337

Query: 185 LQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           L I  C ++TD G+  +   L +LT ++L GC                        +++ 
Sbjct: 338 LNIGQCGRITDKGLELIADHLTQLTGIDLYGCT-----------------------KITK 374

Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
            G E+ +++  LKVLNLG  ++T+
Sbjct: 375 RGLERITQLPCLKVLNLGLWQMTE 398


>gi|91085811|ref|XP_974701.1| PREDICTED: similar to partner of paired CG9952-PA [Tribolium
           castaneum]
          Length = 439

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 108/322 (33%), Positives = 162/322 (50%), Gaps = 30/322 (9%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI------HGGLVNLKGLMK 156
           RG+  +  LS R++     QG+       NL  L+L  C  +      H  + +   L +
Sbjct: 121 RGIKRVQVLSLRKSLRDVIQGIP------NLESLNLRGCYNVGDVGISHAFVADSPTLTE 174

Query: 157 LESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEG 213
           L+   +  C  +TD+ +  ++  L NL+ L++  CS VT+SG+  +  GL+KL  LNL  
Sbjct: 175 LD---LSLCKQVTDTSLTRIAQHLKNLEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRS 231

Query: 214 C-PVTAACLDSL-SALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECL 269
           C  V    +  L S   SL +L L  CQ LSD+  +  + + SL  +NL F   ITD  L
Sbjct: 232 CWHVGDQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGL 291

Query: 270 VHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTN 325
            HL  +TNL  LNL SC  I D G+  L  G   +  L++S   ++G   L H+S GL N
Sbjct: 292 KHLAKMTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFN 351

Query: 326 LESINLSFTGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG- 381
           L ++ +S   +SD  L K+A  L  L++LN+    ++TD GL  +  SL  L  +DL+G 
Sbjct: 352 LRNLLMSACQLSDEGLAKIANSLHDLETLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGC 411

Query: 382 ARITDSGAAYLRNFKNLRSLEI 403
            RIT  G   +     L  L +
Sbjct: 412 TRITTVGLERIMKLPQLSVLNL 433



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 101/306 (33%), Positives = 166/306 (54%), Gaps = 38/306 (12%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           + G+ NL+SL +  C  V D GI++                  A   DS     +L  L+
Sbjct: 139 IQGIPNLESLNLRGCYNVGDVGISH------------------AFVADS----PTLTELD 176

Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSCG-IG 289
           L+ C Q++D    + ++ + +L+VL LG  + +T+  L+ +  GL  L+ LNL SC  +G
Sbjct: 177 LSLCKQVTDTSLTRIAQHLKNLEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVG 236

Query: 290 DEGLVNL-TGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAG 346
           D+G+ +L +G  +L+ L L D Q +    L+H +GLT+L SINLSF   I+D  L+ LA 
Sbjct: 237 DQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLKHLAK 296

Query: 347 LSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLE 402
           +++L+ LNL +   I+DTG+A L    + ++ LD+ F  +I D    ++ +   NLR+L 
Sbjct: 297 MTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRNLL 356

Query: 403 ICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITS 459
           +    L+D G+  I + L  L  LN+ Q   +TDK L  I+  L  L  +++   +RIT+
Sbjct: 357 MSACQLSDEGLAKIANSLHDLETLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCTRITT 416

Query: 460 AGLRHL 465
            GL  +
Sbjct: 417 VGLERI 422



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 105/199 (52%), Gaps = 7/199 (3%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
           V D+ +  +AS   SL  + L     ++D  L H    ++L S++ +FC+ I+D GL+HL
Sbjct: 235 VGDQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLKHL 294

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNL-KGLMKLES 159
             ++NL  L+ R  + I+  GM   A G   +  LD+  C +I    LV++ +GL  L +
Sbjct: 295 AKMTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRN 354

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-V 216
           L +  C    +   K  + L +L++L I  CS+VTD G+  + + L +L  ++L GC  +
Sbjct: 355 LLMSACQLSDEGLAKIANSLHDLETLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCTRI 414

Query: 217 TAACLDSLSALGSLFYLNL 235
           T   L+ +  L  L  LNL
Sbjct: 415 TTVGLERIMKLPQLSVLNL 433


>gi|290979547|ref|XP_002672495.1| predicted protein [Naegleria gruberi]
 gi|284086072|gb|EFC39751.1| predicted protein [Naegleria gruberi]
          Length = 665

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 128/264 (48%), Gaps = 18/264 (6%)

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           IT   ++ ++ L  +  + I+  ++ D G + +  +++LT L++     T    + + ++
Sbjct: 398 ITHEVLQNITKLEKVNYVDIAAIRIGDEGASMIGQMKQLTYLDI---SFTGISYNGMRSI 454

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
           G L   NL +   S D  E +S    + V             +HL+ L  L  L++    
Sbjct: 455 GQL--TNLTQLIFSSDDYENYSAPKGVTVA------------IHLRNLKKLTHLDITYNE 500

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           IGDEG   ++ L NL  LE+ + Q+ + G + +S L NL  +N+S    +  S++ L  L
Sbjct: 501 IGDEGSQFISELLNLTYLEMPNNQLRNEGFKMISKLENLTHLNISNNDFNCESMKHLCEL 560

Query: 348 SSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
            +L SL      IT   +  + + L  LT LDL    I + GA Y+   K L+SL++   
Sbjct: 561 KNLTSLEAFNTGITSNDVKLIANHLKYLTELDLSCNDIGNEGAKYVSELKQLQSLQLAQT 620

Query: 407 GLTDAGVKHIKDLSSLTLLNLSQN 430
            L   GVK++  L  LT L++S+N
Sbjct: 621 NLDSEGVKYLVRLDQLTDLDVSEN 644



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 104/215 (48%), Gaps = 9/215 (4%)

Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
           +IT E L ++  L  +  +++ +  IGDEG   +  +  L  L++S T +  +G+R +  
Sbjct: 397 KITHEVLQNITKLEKVNYVDIAAIRIGDEGASMIGQMKQLTYLDISFTGISYNGMRSIGQ 456

Query: 323 LTNLESINLSFTGISDGSLRK-------LAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
           LTNL  +  S     + S  K       L  L  L  L++   +I D G   ++ L  LT
Sbjct: 457 LTNLTQLIFSSDDYENYSAPKGVTVAIHLRNLKKLTHLDITYNEIGDEGSQFISELLNLT 516

Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
           +L++   ++ + G   +   +NL  L I         +KH+ +L +LT L  + N  +T 
Sbjct: 517 YLEMPNNQLRNEGFKMISKLENLTHLNISNNDFNCESMKHLCELKNLTSLE-AFNTGITS 575

Query: 436 KTLELISG-LTGLVSLNVSNSRITSAGLRHLNHAR 469
             ++LI+  L  L  L++S + I + G ++++  +
Sbjct: 576 NDVKLIANHLKYLTELDLSCNDIGNEGAKYVSELK 610



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 116/251 (46%), Gaps = 14/251 (5%)

Query: 91  CIQISDGGLEHLRGLSNLTSL--SFRRNNAITAQGMKAFAGLINLVKL-----DLERCTR 143
            I+I D G   +  +  LT L  SF     I+  GM++   L NL +L     D E  + 
Sbjct: 419 AIRIGDEGASMIGQMKQLTYLDISF---TGISYNGMRSIGQLTNLTQLIFSSDDYENYSA 475

Query: 144 IHGGLV--NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
             G  V  +L+ L KL  L+I + N I D   + +S L NL  L++  +++ + G   + 
Sbjct: 476 PKGVTVAIHLRNLKKLTHLDITY-NEIGDEGSQFISELLNLTYLEMPNNQLRNEGFKMIS 534

Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN-LNRCQLSDDGCEKFSKIGSLKVLNLG 260
            L+ LT LN+         +  L  L +L  L   N    S+D     + +  L  L+L 
Sbjct: 535 KLENLTHLNISNNDFNCESMKHLCELKNLTSLEAFNTGITSNDVKLIANHLKYLTELDLS 594

Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
            N+I +E   ++  L  L+SL L    +  EG+  L  L  L  L++S+  + +   ++L
Sbjct: 595 CNDIGNEGAKYVSELKQLQSLQLAQTNLDSEGVKYLVRLDQLTDLDVSENSIDAERCKYL 654

Query: 321 SGLTNLESINL 331
           + +  LE +++
Sbjct: 655 NEMKQLEELSI 665


>gi|302753328|ref|XP_002960088.1| hypothetical protein SELMODRAFT_437235 [Selaginella moellendorffii]
 gi|300171027|gb|EFJ37627.1| hypothetical protein SELMODRAFT_437235 [Selaginella moellendorffii]
          Length = 657

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 118/435 (27%), Positives = 198/435 (45%), Gaps = 68/435 (15%)

Query: 43  GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
           G+ D  + ++A     L ++DLS ++VTD GL  +    +L+ L+   C  + DGGL  L
Sbjct: 190 GITDIGIALVAVNCKQLRTLDLSYTEVTDEGLASIATLHSLEVLNLVSCNNVDDGGLRSL 249

Query: 103 -RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVN---------- 150
            R   +L  L   R + ++  G+ A A   ++L +L L  C+ I   L+           
Sbjct: 250 KRSCRSLLKLDVSRCSNVSDAGLAALATSHLSLEQLTLSYCSIITDDLLATFQKFDHLQS 309

Query: 151 ----------------LKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSK-V 192
                            +G  +L+ L++  C  +TD  +  ++ G T L  L ++C + +
Sbjct: 310 IVLDGCEIARNGLPFIARGCKQLKELSLSKCRGVTDRGIAAVAQGCTALHKLNLTCCREL 369

Query: 193 TDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNRCQLSDDGCEK 247
           TD+ +  + K  + L  L +E C +     D L  LG     L  L+   C +SD G + 
Sbjct: 370 TDASLCRISKDCKGLESLKMESCSLITE--DGLCGLGEGCPRLEELDFTECNMSDTGLKY 427

Query: 248 FSKIGSLKVLNLGF-NEITDECLVHLKG-LTNLESLNL-DSCGIGDEGLVNLTGLCNLKC 304
            SK  +L+ L LGF + ITD+ + H+     NL  L+   S GIGD G+  +        
Sbjct: 428 ISKCTALRSLKLGFCSTITDKGVAHIGARCCNLRELDFYRSKGIGDAGVAAIA------- 480

Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITD 362
                           SG   L+ ++LS+ + I+D SL+ L+ L  L+ L L     ++ 
Sbjct: 481 ----------------SGCPKLKLLDLSYCSKITDCSLQSLSQLRELQRLELRGCVLVSS 524

Query: 363 TGLAALTS-LTGLTHLDL-FGARITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIKDL 419
           TGLA + S    LT +D+   ++I ++G + L  F   LR + I    ++ AG+  +  L
Sbjct: 525 TGLAVMASGCKRLTEIDIKRCSQIGNAGVSALSFFCPGLRMMNISYCPISKAGLLSLPRL 584

Query: 420 SSLTLLNLSQNCNLT 434
           S L  + L    N+T
Sbjct: 585 SCLQSVRLVHLKNVT 599



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 131/449 (29%), Positives = 205/449 (45%), Gaps = 67/449 (14%)

Query: 56  GSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
           G+ L S++LS   G      GL+    C++L  +D ++C  + D  +  L  +SNL +L 
Sbjct: 99  GNRLASINLSRVGGFTSAGLGLLARSCCASLTDVDLSYCSNLKDSDVLALAQISNLQALR 158

Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
               ++IT  G+   A    ++KL                       L +K C  ITD  
Sbjct: 159 LTGCHSITDIGLGCLAAGCKMLKL-----------------------LTLKGCLGITDIG 195

Query: 173 MKPLS-GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS-ALGS 229
           +  ++     L++L +S ++VTD G+A +  L  L +LNL  C  V    L SL  +  S
Sbjct: 196 IALVAVNCKQLRTLDLSYTEVTDEGLASIATLHSLEVLNLVSCNNVDDGGLRSLKRSCRS 255

Query: 230 LFYLNLNRCQ-LSDDGCEKFSKIG-SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC 286
           L  L+++RC  +SD G    +    SL+ L L + + ITD+ L   +   +L+S+ LD C
Sbjct: 256 LLKLDVSRCSNVSDAGLAALATSHLSLEQLTLSYCSIITDDLLATFQKFDHLQSIVLDGC 315

Query: 287 GIGDEGLVNLTGLC-NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFT-GISDGSLR 342
            I   GL  +   C  LK L LS  + V   G+  ++ G T L  +NL+    ++D SL 
Sbjct: 316 EIARNGLPFIARGCKQLKELSLSKCRGVTDRGIAAVAQGCTALHKLNLTCCRELTDASLC 375

Query: 343 KLA----GLSSLK-----------------------SLNLDARQITDTGLAALTSLTGLT 375
           +++    GL SLK                        L+     ++DTGL  ++  T L 
Sbjct: 376 RISKDCKGLESLKMESCSLITEDGLCGLGEGCPRLEELDFTECNMSDTGLKYISKCTALR 435

Query: 376 HLDL-FGARITDSGAAYL-RNFKNLRSLEIC-GGGLTDAGVKHIKD-LSSLTLLNLSQNC 431
            L L F + ITD G A++     NLR L+     G+ DAGV  I      L LL+LS   
Sbjct: 436 SLKLGFCSTITDKGVAHIGARCCNLRELDFYRSKGIGDAGVAAIASGCPKLKLLDLSYCS 495

Query: 432 NLTDKTLELISGLTGLVSLNVSNSRITSA 460
            +TD +L+ +S L  L  L +    + S+
Sbjct: 496 KITDCSLQSLSQLRELQRLELRGCVLVSS 524



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 28/162 (17%)

Query: 29  RDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF 88
           R C L++L   +  G+ D  +  IAS                         C  L+ LD 
Sbjct: 456 RCCNLRELDFYRSKGIGDAGVAAIAS------------------------GCPKLKLLDL 491

Query: 89  NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HG 146
           ++C +I+D  L+ L  L  L  L  R    +++ G+   A G   L ++D++RC++I + 
Sbjct: 492 SYCSKITDCSLQSLSQLRELQRLELRGCVLVSSTGLAVMASGCKRLTEIDIKRCSQIGNA 551

Query: 147 GLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
           G+  L      L  +NI +C  I+ + +  L  L+ L+S+++
Sbjct: 552 GVSALSFFCPGLRMMNISYCP-ISKAGLLSLPRLSCLQSVRL 592


>gi|302804592|ref|XP_002984048.1| hypothetical protein SELMODRAFT_445748 [Selaginella moellendorffii]
 gi|300148400|gb|EFJ15060.1| hypothetical protein SELMODRAFT_445748 [Selaginella moellendorffii]
          Length = 657

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 123/465 (26%), Positives = 215/465 (46%), Gaps = 58/465 (12%)

Query: 43  GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
           G+ D  + ++A     L ++DLS ++VTD GL  +    +L+ L+   C  + DGGL  L
Sbjct: 190 GITDIGIALVAVNCKQLRTLDLSYTEVTDEGLASIATLHSLEVLNLVSCNNVDDGGLRSL 249

Query: 103 -RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVN---------- 150
            R   +L  L   R + ++  G+ A A   ++L +L L  C+ I   L+           
Sbjct: 250 KRSCRSLLKLDVSRCSNVSDAGLAALATSHLSLEQLTLSYCSIITDDLLATFQKFDHLQS 309

Query: 151 ----------------LKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSK-V 192
                            +G  +L+ L++  C  +TD  +  ++ G T L  L ++C + +
Sbjct: 310 IVLDGCEIARNGLPFIARGCKQLKELSLSKCRGVTDRGIAAVAQGCTALHKLNLTCCREL 369

Query: 193 TDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNRCQLSDDGCEK 247
           TD+ +  + K  + L  L +E C +     D L  LG     L  L+   C +SD G + 
Sbjct: 370 TDASLCRISKDCKGLESLKMESCSLITE--DGLCGLGEGCPRLEELDFTECNMSDTGLKY 427

Query: 248 FSKIGSLKVLNLGF-NEITDECLVHLKG-LTNLESLNL-DSCGIGDEGLVNLTGLC-NLK 303
            SK  +L+ L LGF + ITD+ + H+     NL  L+   S GIGD G+  +   C  LK
Sbjct: 428 ISKCTALRSLKLGFCSTITDKGVAHIGARCCNLRELDFYRSKGIGDAGVAAIASGCPKLK 487

Query: 304 CLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLD-ARQ 359
            L+LS  +++    L+ LS L  L+ + L     +S   L  +A G   L  +++    Q
Sbjct: 488 LLDLSYCSKITDCSLQSLSQLRELQRVELRGCVLVSSTGLAVMASGCKRLTEIDIKRCSQ 547

Query: 360 ITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
           I + G++AL+    GL  +++    I+++G   L     L+S+ +           H+K+
Sbjct: 548 IGNAGVSALSFFCPGLRMMNISYCPISNAGLLSLPRLSCLQSVRL----------VHLKN 597

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
           ++    + + QNC  + K ++L S L  L+   ++   + S G R
Sbjct: 598 VTVDCFVTVLQNCK-SLKNVKLPSYLRTLLPPGIAEE-MESRGCR 640



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 129/436 (29%), Positives = 200/436 (45%), Gaps = 67/436 (15%)

Query: 56  GSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
           G+ L S++LS   G      GL+    C++L  +D ++C  + D  +  L  +SNL +L 
Sbjct: 99  GNRLASINLSRVGGFTSAGLGLLARSCCASLTDVDLSYCSNLKDSDVLALAQISNLQALR 158

Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
               ++IT  G+   A    ++KL                       L +K C  ITD  
Sbjct: 159 LTGCHSITDIGLGCLAAGCKMLKL-----------------------LTLKGCLGITDIG 195

Query: 173 MKPLS-GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS-ALGS 229
           +  ++     L++L +S ++VTD G+A +  L  L +LNL  C  V    L SL  +  S
Sbjct: 196 IALVAVNCKQLRTLDLSYTEVTDEGLASIATLHSLEVLNLVSCNNVDDGGLRSLKRSCRS 255

Query: 230 LFYLNLNRCQ-LSDDGCEKFSKIG-SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC 286
           L  L+++RC  +SD G    +    SL+ L L + + ITD+ L   +   +L+S+ LD C
Sbjct: 256 LLKLDVSRCSNVSDAGLAALATSHLSLEQLTLSYCSIITDDLLATFQKFDHLQSIVLDGC 315

Query: 287 GIGDEGLVNLTGLC-NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFT-GISDGSLR 342
            I   GL  +   C  LK L LS  + V   G+  ++ G T L  +NL+    ++D SL 
Sbjct: 316 EIARNGLPFIARGCKQLKELSLSKCRGVTDRGIAAVAQGCTALHKLNLTCCRELTDASLC 375

Query: 343 KLA----GLSSLK-----------------------SLNLDARQITDTGLAALTSLTGLT 375
           +++    GL SLK                        L+     ++DTGL  ++  T L 
Sbjct: 376 RISKDCKGLESLKMESCSLITEDGLCGLGEGCPRLEELDFTECNMSDTGLKYISKCTALR 435

Query: 376 HLDL-FGARITDSGAAYL-RNFKNLRSLEIC-GGGLTDAGVKHIKD-LSSLTLLNLSQNC 431
            L L F + ITD G A++     NLR L+     G+ DAGV  I      L LL+LS   
Sbjct: 436 SLKLGFCSTITDKGVAHIGARCCNLRELDFYRSKGIGDAGVAAIASGCPKLKLLDLSYCS 495

Query: 432 NLTDKTLELISGLTGL 447
            +TD +L+ +S L  L
Sbjct: 496 KITDCSLQSLSQLREL 511



 Score = 43.1 bits (100), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 28/162 (17%)

Query: 29  RDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF 88
           R C L++L   +  G+ D  +  IAS                         C  L+ LD 
Sbjct: 456 RCCNLRELDFYRSKGIGDAGVAAIAS------------------------GCPKLKLLDL 491

Query: 89  NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HG 146
           ++C +I+D  L+ L  L  L  +  R    +++ G+   A G   L ++D++RC++I + 
Sbjct: 492 SYCSKITDCSLQSLSQLRELQRVELRGCVLVSSTGLAVMASGCKRLTEIDIKRCSQIGNA 551

Query: 147 GLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
           G+  L      L  +NI +C  I+++ +  L  L+ L+S+++
Sbjct: 552 GVSALSFFCPGLRMMNISYCP-ISNAGLLSLPRLSCLQSVRL 592


>gi|414076287|ref|YP_006995605.1| hypothetical protein ANA_C11003 [Anabaena sp. 90]
 gi|413969703|gb|AFW93792.1| leucine-rich repeat-containing protein [Anabaena sp. 90]
          Length = 474

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 99/258 (38%), Positives = 140/258 (54%), Gaps = 22/258 (8%)

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           SD+KPLS LT L SL +S +K++D  I  L  L KLT L L    ++   + SLS L  L
Sbjct: 98  SDIKPLSNLTKLTSLGLSKNKISD--IKSLSNLTKLTSLGLSKNKISD--IKSLSNLTKL 153

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
             L+L   Q+SD      S +  L  L+L  N+I+D  +  L  LTNL  LNL    I D
Sbjct: 154 TKLDLVGNQISD--TTPLSNLTKLTSLDLWGNQISD--IKPLSNLTNLTFLNLVGNKISD 209

Query: 291 -EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
            + L NLT L     L LS  ++  S ++ LS  TNL  ++L    ISD +   L+ L+ 
Sbjct: 210 IKPLSNLTKLT---SLGLSKNKI--SDIKSLSNFTNLTKLDLVGNQISDTT--PLSNLTK 262

Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409
           L SL+L   QI+D  +  L++LT LT L L+G +I  S    L N  NL SL +    ++
Sbjct: 263 LTSLDLWGNQISD--IKPLSNLTNLTFLILWGNQI--SNIKPLSNLTNLTSLTLSLNQIS 318

Query: 410 DAGVKHIKDLSSLTLLNL 427
           D  +K + +L++LT L+L
Sbjct: 319 D--IKPLSNLTNLTYLDL 334



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 135/420 (32%), Positives = 208/420 (49%), Gaps = 56/420 (13%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN---LTS 110
           SQ + +L+ +L+   ++++ +  +K  SNL  L     + +S   +  ++ LSN   LTS
Sbjct: 78  SQANQILT-NLTSLGLSENKISDIKPLSNLTKLT---SLGLSKNKISDIKSLSNLTKLTS 133

Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
           L   +N       +K+ + L  L KLDL            L  L KL SL++ W N I  
Sbjct: 134 LGLSKNK---ISDIKSLSNLTKLTKLDL--VGNQISDTTPLSNLTKLTSLDL-WGNQI-- 185

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           SD+KPLS LTNL  L +  +K++D  I  L  L KLT L L    ++   + SLS   +L
Sbjct: 186 SDIKPLSNLTNLTFLNLVGNKISD--IKPLSNLTKLTSLGLSKNKISD--IKSLSNFTNL 241

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
             L+L   Q+SD      S +  L  L+L  N+I+D  +  L  LTNL  L L   G   
Sbjct: 242 TKLDLVGNQISD--TTPLSNLTKLTSLDLWGNQISD--IKPLSNLTNLTFLIL--WGNQI 295

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
             +  L+ L NL  L LS  Q+  S ++ LS LTNL  ++L    ISD  ++ L+ L++L
Sbjct: 296 SNIKPLSNLTNLTSLTLSLNQI--SDIKPLSNLTNLTYLDLWGNKISD--IKPLSNLTNL 351

Query: 351 KSLNLDARQITD--------------------TGLAALTSLTGLTHLDLFGARITDSGAA 390
             L L + +I+D                    + +  L+SLT LT L L   +I+D    
Sbjct: 352 TYLYLLSNKISDIKPLSNLTNLTLLFLSLNQISDIKPLSSLTNLTFLILSKNQISD--IK 409

Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
            L N  NL SL +    ++D  +K + +L++LT L+L +N  ++D  ++ +S LT L  L
Sbjct: 410 PLSNLTNLTSLGLSENKISD--IKPLSNLTNLTYLSLWENP-ISD--IKPLSNLTNLTEL 464



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 118/331 (35%), Positives = 171/331 (51%), Gaps = 33/331 (9%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI--QISDGGLEHLRGLSNLTSLSFR 114
           + L S+DL G+ ++D     +K  SNL +L F   +  +ISD  ++ L  L+ LTSL   
Sbjct: 173 TKLTSLDLWGNQISD-----IKPLSNLTNLTFLNLVGNKISD--IKPLSNLTKLTSLGLS 225

Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
           +N       +K+ +   NL KLDL            L  L KL SL++ W N I  SD+K
Sbjct: 226 KNK---ISDIKSLSNFTNLTKLDL--VGNQISDTTPLSNLTKLTSLDL-WGNQI--SDIK 277

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           PLS LTNL  L +  +++  S I  L  L  LT L L    ++   +  LS L +L YL+
Sbjct: 278 PLSNLTNLTFLILWGNQI--SNIKPLSNLTNLTSLTLSLNQISD--IKPLSNLTNLTYLD 333

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           L   ++SD   +  S + +L  L L  N+I+D  +  L  LTNL  L L    I D  + 
Sbjct: 334 LWGNKISD--IKPLSNLTNLTYLYLLSNKISD--IKPLSNLTNLTLLFLSLNQISD--IK 387

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
            L+ L NL  L LS  Q+  S ++ LS LTNL S+ LS   ISD  ++ L+ L++L  L+
Sbjct: 388 PLSSLTNLTFLILSKNQI--SDIKPLSNLTNLTSLGLSENKISD--IKPLSNLTNLTYLS 443

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           L    I+D  +  L++LT LT L L+    T
Sbjct: 444 LWENPISD--IKPLSNLTNLTELYLWENPFT 472


>gi|326487896|dbj|BAJ89787.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 661

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 130/440 (29%), Positives = 200/440 (45%), Gaps = 69/440 (15%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFC 91
           ++ +CL +  GV  + ++ + +    L +VDLS      D     L   S L+ L+   C
Sbjct: 106 VRQVCLARASGVGWRGLEALVAACPRLEAVDLSHCVGAGDREAAALAAASGLRELNLEKC 165

Query: 92  IQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGLV 149
           + ++D GL  +  G   L +LSF+    I+  G+        +L  LD+      +  L 
Sbjct: 166 LGVTDMGLAKVAVGCPRLETLSFKWCREISDIGVDLLVKKCRDLRSLDISYLKVSNESLR 225

Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL----KGL 203
           ++  L KLE L +  C+CI D  ++ LS G  +L+S+ +S C+ VT  G+A L      L
Sbjct: 226 SISTLEKLEELAMVACSCIDDEGLELLSRGSNSLQSVDVSRCNHVTSQGLASLIDGHSFL 285

Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
           QKL           AA  DSL  +G  F   L             +   +L VL L   E
Sbjct: 286 QKL----------NAA--DSLHEIGQNFLSKL------------VTLKATLTVLRLDGFE 321

Query: 264 ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCN-------------------- 301
           ++   L  + +G TNL  + L  C G+ DEG+ +L   C+                    
Sbjct: 322 VSSSLLSAIGEGCTNLVEIGLSKCNGVTDEGISSLVARCSYLRKIDLTCCNLVTNDSLDS 381

Query: 302 -------LKCLEL-SDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
                  L+CL L S + +   GL  + S   NL+ I+L+  G++D +L  LA  S L  
Sbjct: 382 IADNCKMLECLRLESCSSINEKGLERIASCCPNLKEIDLTDCGVNDEALHHLAKCSELLI 441

Query: 353 LNLD-ARQITDTGLAALTSLTG-LTHLDLFG-ARITDSGAAYLRN-FKNLRSLEICG-GG 407
           L L  +  I+D GL  ++S  G L  LDL+  + ITD G A L N  K ++ L +C    
Sbjct: 442 LKLGLSSSISDKGLGFISSKCGKLIELDLYRCSSITDDGLAALANGCKKIKLLNLCYCNK 501

Query: 408 LTDAGVKHIKDLSSLTLLNL 427
           +TD+G+ H+  L  LT L L
Sbjct: 502 ITDSGLSHLGALEELTNLEL 521



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 128/452 (28%), Positives = 202/452 (44%), Gaps = 89/452 (19%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL- 102
           ++D  +D++  +   L S+D+S   V++  L  +     L+ L    C  I D GLE L 
Sbjct: 194 ISDIGVDLLVKKCRDLRSLDISYLKVSNESLRSISTLEKLEELAMVACSCIDDEGLELLS 253

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
           RG ++L S+   R N +T+QG+   A LI+              G   L+ L   +SL+ 
Sbjct: 254 RGSNSLQSVDVSRCNHVTSQGL---ASLID--------------GHSFLQKLNAADSLH- 295

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
                  +     LS L  LK+                     LT+L L+G  V+++   
Sbjct: 296 -------EIGQNFLSKLVTLKA--------------------TLTVLRLDGFEVSSS--- 325

Query: 223 SLSALGS----LFYLNLNRCQ-LSDDG-------CEKFSKIGSLKVLNLGFNE----ITD 266
            LSA+G     L  + L++C  ++D+G       C    KI  L   NL  N+    I D
Sbjct: 326 LLSAIGEGCTNLVEIGLSKCNGVTDEGISSLVARCSYLRKI-DLTCCNLVTNDSLDSIAD 384

Query: 267 ECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLT 324
            C +       LE L L+SC  I ++GL  +   C NLK ++L+D  V    L HL+  +
Sbjct: 385 NCKM-------LECLRLESCSSINEKGLERIASCCPNLKEIDLTDCGVNDEALHHLAKCS 437

Query: 325 NLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQ---ITDTGLAALTSLTGLTHLDL- 379
            L  + L   + ISD  L  ++     K + LD  +   ITD GLAAL +  G   + L 
Sbjct: 438 ELLILKLGLSSSISDKGLGFISSKCG-KLIELDLYRCSSITDDGLAALAN--GCKKIKLL 494

Query: 380 ---FGARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIK-DLSSLTLLNLSQNCNLT 434
              +  +ITDSG ++L   + L +LE+ C   +T  G+  +     SL  L+L +  ++ 
Sbjct: 495 NLCYCNKITDSGLSHLGALEELTNLELRCLVRITGIGISSVVIGCKSLVELDLKRCYSVN 554

Query: 435 DKTLELISGLT-GLVSLNVSNSRITSAGLRHL 465
           D  L  ++     L  L +S  ++T  GL HL
Sbjct: 555 DSGLWALARYALNLRQLTISYCQVTGLGLCHL 586


>gi|442624469|ref|NP_001261138.1| partner of paired, isoform B [Drosophila melanogaster]
 gi|440214583|gb|AGB93669.1| partner of paired, isoform B [Drosophila melanogaster]
          Length = 562

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 121/374 (32%), Positives = 188/374 (50%), Gaps = 68/374 (18%)

Query: 7   SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
           S  +FN LV  R + +V + + R  +L+DL LG                  +L S++LSG
Sbjct: 202 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 243

Query: 67  S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
             +V D  L H    D  NL++LD + C QI+D  L    +HLR   NL +L       I
Sbjct: 244 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLETLELGGCCNI 300

Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
           T  G+   A GL  L  L+L  C  I   G+ +L G         ++LE L ++ C  ++
Sbjct: 301 TNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLS 360

Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           D  +  ++ GLT+LKS+ +S C  VTDSG+ +L  + KL  LNL  C       D++S +
Sbjct: 361 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 413

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
           G  +        L++ G    S I SL V    F ++I+D+ L H+ +GL  L SL+L+ 
Sbjct: 414 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 458

Query: 286 CGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSL 341
           C I D G++ +   L  L+ L +   +++   GL+ L+  LTNL++I+L   T +S   +
Sbjct: 459 CQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGI 518

Query: 342 RKLAGLSSLKSLNL 355
             +  L  L+ LNL
Sbjct: 519 DIIMKLPKLQKLNL 532



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 110/352 (31%), Positives = 172/352 (48%), Gaps = 58/352 (16%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
           RG+  +  LS RR+      G+ A      +G  N+  ++L     +         L  L
Sbjct: 212 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSV--------DLPNL 263

Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           ++L++  C  ITD+ +  ++  L NL++L++  C  +T++G+  +  GL+KL  LNL  C
Sbjct: 264 KTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSC 323

Query: 215 PVTA-------ACLDSLSALGSL--FYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
              +       A     +A G+L   YL L  CQ LSD+     ++ + SLK +NL F  
Sbjct: 324 WHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 383

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
            +TD  L HL  +  LE LNL SC  I D G+  LT               G SG     
Sbjct: 384 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTE--------------GGSG----- 424

Query: 322 GLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLD 378
               + S+++SF   ISD +L  +A GL  L+SL+L+  QITD G+  +  +L  L +L+
Sbjct: 425 ----INSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLN 480

Query: 379 LFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
           +   +RITD G   L  +  NL+++++ G   L+  G+  I  L  L  LNL
Sbjct: 481 IGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 532



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 153/288 (53%), Gaps = 28/288 (9%)

Query: 202 GLQKLTLLNLEGCPVTAACLDSLSA----LGSLFYLNLNRC-QLSDDGCEKFSK-IGSLK 255
           G+  LT LNL GC    A ++   A    L +L  L+L+ C Q++D    + ++ + +L+
Sbjct: 232 GVPALTSLNLSGC-FNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLE 290

Query: 256 VLNLG--FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLC--------NLKC 304
            L LG   N      L+   GL  L+ LNL SC  I D+G+ +L G           L+ 
Sbjct: 291 TLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEY 350

Query: 305 LELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQI 360
           L L D Q +    L H++ GLT+L+SINLSF   ++D  L+ LA +  L+ LNL +   I
Sbjct: 351 LGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNI 410

Query: 361 TDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI- 416
           +D G+A LT   +G+  LD+ F  +I+D    ++ +    LRSL +    +TD G+  I 
Sbjct: 411 SDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIA 470

Query: 417 KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGL 462
           K L  L  LN+ Q   +TDK L+ L   LT L ++++   ++++S G+
Sbjct: 471 KALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGI 518



 Score = 45.4 bits (106), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 33/219 (15%)

Query: 274 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 324
           G+  L SLNL  C       +G    V+L  L  L    C +++DT +G    +HL  L 
Sbjct: 232 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 290

Query: 325 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLT----- 375
            LE     N++ TG+    L    GL  LK LNL +   I+D G+  L   +  T     
Sbjct: 291 TLELGGCCNITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNL 346

Query: 376 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 428
            L+  G     R++D    ++ +   +L+S  L  C   +TD+G+KH+  +  L  LNL 
Sbjct: 347 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 405

Query: 429 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL 465
              N++D  +  L  G +G+ SL+VS   +I+   L H+
Sbjct: 406 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHI 444


>gi|348505743|ref|XP_003440420.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oreochromis niloticus]
          Length = 403

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 108/329 (32%), Positives = 166/329 (50%), Gaps = 36/329 (10%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-----GLINLVKLDLERCTRIHGGLVNLKGLMKL 157
           RG+  +  LS RR+ +   QGM         G  NL    L        G   ++ +  L
Sbjct: 71  RGIKKVQILSLRRSLSYVIQGMPHIESLNLCGCFNLTDNGL--------GHAFVQDISSL 122

Query: 158 ESLNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
             LN+  C  ITDS +  ++  L NL+ L++  CS +T++G+  +  GL +L  LNL  C
Sbjct: 123 RVLNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSC 182

Query: 215 -PVTAACLDSLSALG--------SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
             V+   +  LS +         +L  L L  CQ L+D   +  SK +  LKVLNL F  
Sbjct: 183 RHVSDVGIGHLSGMTRSAAEGCLTLEKLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCG 242

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
            I+D  ++HL  +T+L SLNL SC  I D G+++L  G   L  L++S   ++G   L +
Sbjct: 243 GISDAGMIHLSHMTHLCSLNLRSCDNISDTGIMHLAMGSLRLTGLDVSFCDKIGDQSLAY 302

Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLT 375
           ++ GL  L+S++L    ISD  + R +  +  LK+LN+    +ITD GL  +   LT LT
Sbjct: 303 IAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLT 362

Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEI 403
            +DL+G  +IT  G   +     L+ L +
Sbjct: 363 GIDLYGCTKITKRGLERITQLPCLKVLNL 391



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 165/308 (53%), Gaps = 26/308 (8%)

Query: 81  SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLD 137
            +++SL+   C  ++D GL H  ++ +S+L  L+      IT   +   A  L NL  L+
Sbjct: 93  PHIESLNLCGCFNLTDNGLGHAFVQDISSLRVLNLSLCKQITDSSLGRIAQYLKNLEVLE 152

Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQI 187
           L  C+ I   G L+   GL +L+SLN++ C  ++D  +  LSG+T         L+ L +
Sbjct: 153 LGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGCLTLEKLTL 212

Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
             C K+TD  + ++ KGL KL +LNL  C  ++ A +  LS +  L  LNL  C  +SD 
Sbjct: 213 QDCQKLTDLSLKHISKGLNKLKVLNLSFCGGISDAGMIHLSHMTHLCSLNLRSCDNISDT 272

Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-G 298
           G    + +GSL++  L++ F ++I D+ L ++ +GL  L+SL+L SC I D+G+  +   
Sbjct: 273 GIMHLA-MGSLRLTGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQ 331

Query: 299 LCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 355
           +  LK L +    ++   GL  ++  LT L  I+L   T I+   L ++  L  LK LNL
Sbjct: 332 MHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNL 391

Query: 356 DARQITDT 363
              Q+T++
Sbjct: 392 GLWQMTES 399



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 169/318 (53%), Gaps = 50/318 (15%)

Query: 176 LSGLTNLKSLQI-SCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           + G+ +++SL +  C  +TD+G+  A+++ +  L +LNL  C                  
Sbjct: 89  IQGMPHIESLNLCGCFNLTDNGLGHAFVQDISSLRVLNLSLCK----------------- 131

Query: 233 LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GI 288
                 Q++D    + ++ + +L+VL LG  + IT+  L+ +  GL  L+SLNL SC  +
Sbjct: 132 ------QITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHV 185

Query: 289 GDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-IS 337
            D G+ +L+G+          L+ L L D Q +    L+H+S GL  L+ +NLSF G IS
Sbjct: 186 SDVGIGHLSGMTRSAAEGCLTLEKLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGGIS 245

Query: 338 DGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL- 392
           D  +  L+ ++ L SLNL +   I+DTG+   A+ SL  LT LD+ F  +I D   AY+ 
Sbjct: 246 DAGMIHLSHMTHLCSLNLRSCDNISDTGIMHLAMGSLR-LTGLDVSFCDKIGDQSLAYIA 304

Query: 393 RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSL 450
           +    L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  LT L  +
Sbjct: 305 QGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGI 364

Query: 451 NVSN-SRITSAGLRHLNH 467
           ++   ++IT  GL  +  
Sbjct: 365 DLYGCTKITKRGLERITQ 382



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 29/204 (14%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           +TD  L H+ K  + L+ L+ +FC  ISD G+ HL  +++L SL+ R  + I+  G+   
Sbjct: 218 LTDLSLKHISKGLNKLKVLNLSFCGGISDAGMIHLSHMTHLCSLNLRSCDNISDTGIMHL 277

Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           A G + L  LD+  C +I    +    +GL +L+SL++  C+   D   + +  +  LK+
Sbjct: 278 AMGSLRLTGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKT 337

Query: 185 LQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           L I  C ++TD G+  +   L +LT ++L GC                        +++ 
Sbjct: 338 LNIGQCVRITDKGLELIADHLTQLTGIDLYGCT-----------------------KITK 374

Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
            G E+ +++  LKVLNLG  ++T+
Sbjct: 375 RGLERITQLPCLKVLNLGLWQMTE 398


>gi|326505700|dbj|BAJ95521.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 661

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 130/440 (29%), Positives = 200/440 (45%), Gaps = 69/440 (15%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFC 91
           ++ +CL +  GV  + ++ + +    L +VDLS      D     L   S L+ L+   C
Sbjct: 106 VRQVCLARASGVGWRGLEALVAACPRLEAVDLSHCVGAGDREAAALAAASGLRELNLEKC 165

Query: 92  IQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGLV 149
           + ++D GL  +  G   L +LSF+    I+  G+        +L  LD+      +  L 
Sbjct: 166 LGVTDMGLAKVAVGCPRLETLSFKWCREISDIGVDLLVKKCRDLRSLDISYLKVSNESLR 225

Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL----KGL 203
           ++  L KLE L +  C+CI D  ++ LS G  +L+S+ +S C+ VT  G+A L      L
Sbjct: 226 SISTLEKLEELAMVACSCIDDEGLELLSRGSNSLQSVDVSRCNHVTSQGLASLIDGHSFL 285

Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
           QKL           AA  DSL  +G  F   L             +   +L VL L   E
Sbjct: 286 QKL----------NAA--DSLHEIGQNFLSKL------------VTLKATLTVLRLDGFE 321

Query: 264 ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCN-------------------- 301
           ++   L  + +G TNL  + L  C G+ DEG+ +L   C+                    
Sbjct: 322 VSSSLLSAIGEGCTNLVEIGLSKCNGVTDEGISSLVARCSYLRKIDLTCCNLVTNDSLDS 381

Query: 302 -------LKCLEL-SDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
                  L+CL L S + +   GL  + S   NL+ I+L+  G++D +L  LA  S L  
Sbjct: 382 IADNCKMLECLRLESCSSINEKGLERIASCCPNLKEIDLTDCGVNDEALHHLAKCSELLI 441

Query: 353 LNLD-ARQITDTGLAALTSLTG-LTHLDLFG-ARITDSGAAYLRN-FKNLRSLEICG-GG 407
           L L  +  I+D GL  ++S  G L  LDL+  + ITD G A L N  K ++ L +C    
Sbjct: 442 LKLGLSSSISDKGLGFISSKCGKLIELDLYRCSSITDDGLAALANGCKKIKLLNLCYCNK 501

Query: 408 LTDAGVKHIKDLSSLTLLNL 427
           +TD+G+ H+  L  LT L L
Sbjct: 502 ITDSGLSHLGALEELTNLEL 521



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 128/452 (28%), Positives = 202/452 (44%), Gaps = 89/452 (19%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL- 102
           ++D  +D++  +   L S+D+S   V++  L  +     L+ L    C  I D GLE L 
Sbjct: 194 ISDIGVDLLVKKCRDLRSLDISYLKVSNESLRSISTLEKLEELAMVACSCIDDEGLELLS 253

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
           RG ++L S+   R N +T+QG+   A LI+              G   L+ L   +SL+ 
Sbjct: 254 RGSNSLQSVDVSRCNHVTSQGL---ASLID--------------GHSFLQKLNAADSLH- 295

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
                  +     LS L  LK+                     LT+L L+G  V+++   
Sbjct: 296 -------EIGQNFLSKLVTLKA--------------------TLTVLRLDGFEVSSS--- 325

Query: 223 SLSALGS----LFYLNLNRCQ-LSDDG-------CEKFSKIGSLKVLNLGFNE----ITD 266
            LSA+G     L  + L++C  ++D+G       C    KI  L   NL  N+    I D
Sbjct: 326 LLSAIGEGCTNLVEIGLSKCNGVTDEGISSLVARCSYLRKI-DLTCCNLVTNDSLDSIAD 384

Query: 267 ECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLT 324
            C +       LE L L+SC  I ++GL  +   C NLK ++L+D  V    L HL+  +
Sbjct: 385 NCKM-------LECLRLESCSSINEKGLERIASCCPNLKEIDLTDCGVNDEALHHLAKCS 437

Query: 325 NLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQ---ITDTGLAALTSLTGLTHLDL- 379
            L  + L   + ISD  L  ++     K + LD  +   ITD GLAAL +  G   + L 
Sbjct: 438 ELLILKLGLSSSISDKGLGFISSKCG-KLIELDLYRCSSITDDGLAALAN--GCKKIKLL 494

Query: 380 ---FGARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIK-DLSSLTLLNLSQNCNLT 434
              +  +ITDSG ++L   + L +LE+ C   +T  G+  +     SL  L+L +  ++ 
Sbjct: 495 NLCYCNKITDSGLSHLGALEELTNLELRCLVRITGIGISSVVIGCKSLVELDLKRCYSVD 554

Query: 435 DKTLELISGLT-GLVSLNVSNSRITSAGLRHL 465
           D  L  ++     L  L +S  ++T  GL HL
Sbjct: 555 DSGLWALARYALNLRQLTISYCQVTGLGLCHL 586


>gi|51850115|dbj|BAD42399.1| leucine-rich repeat protein [Ralstonia solanacearum]
          Length = 1035

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 115/377 (30%), Positives = 175/377 (46%), Gaps = 7/377 (1%)

Query: 57   SSLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
             S+  +DLSG   S V+++GL +L     L SLD +    I + G + L   ++LTSL+ 
Sbjct: 631  PSVRHLDLSGCTGSAVSEAGLAYLARLP-LASLDLSDT-GIGNRGAQALAASASLTSLNL 688

Query: 114  RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
               N I   G +A      L  LD+      + G   L     L SL ++    I D  +
Sbjct: 689  S-GNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALASSRSLTSLELR-DTGIEDGGI 746

Query: 174  KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
            + L+  T L+SL IS + ++D   A L   + LT L   GC +T      L+ + SL  L
Sbjct: 747  EALAANTVLRSLDISGNDLSDQSAAALAANRTLTSLKANGCGLTNDMAQQLARIRSLRTL 806

Query: 234  NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
             +    + D G    ++  SL+ LNL  N IT + L  L     L+SL++   G GD G 
Sbjct: 807  EVGSNSIGDAGVLTIARNASLRSLNLSRNSITPQGLYPLALSRTLKSLDVSRIGCGDRGA 866

Query: 294  VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
            + L+G   L  L+L   ++ S G R L+    L S++L    I   + R LA    L SL
Sbjct: 867  LLLSGNRALTSLKLGFNRISSEGARRLAANRTLVSLDLRGNTIDVAAARALANAEPLASL 926

Query: 354  NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
            N+   ++ D    AL     LT LD+   R++   A  L +   L SL+I    +   G 
Sbjct: 927  NVSDCRLDDAVACALAESRTLTSLDVSWNRLSHRAARALADNPVLASLDISHNDIGPEGA 986

Query: 414  KHIKDLSSLTLLNLSQN 430
            + + D +SLT+L+   N
Sbjct: 987  QALADSASLTILDARAN 1003



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 138/316 (43%), Gaps = 22/316 (6%)

Query: 14   LVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSG 73
            L  SR LT  SLE  RD            G+ D  ++ +A+  + L S+D+SG+D++D  
Sbjct: 725  LASSRSLT--SLE-LRDT-----------GIEDGGIEALAAN-TVLRSLDISGNDLSDQS 769

Query: 74   LIHLKDCSNLQSLDFNFCIQISDGG--LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
               L     L SL  N C   +D    L  +R L  L   S    N+I   G+   A   
Sbjct: 770  AAALAANRTLTSLKANGCGLTNDMAQQLARIRSLRTLEVGS----NSIGDAGVLTIARNA 825

Query: 132  NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
            +L  L+L R +    GL  L     L+SL++    C  D     LSG   L SL++  ++
Sbjct: 826  SLRSLNLSRNSITPQGLYPLALSRTLKSLDVSRIGC-GDRGALLLSGNRALTSLKLGFNR 884

Query: 192  VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
            ++  G   L   + L  L+L G  +  A   +L+    L  LN++ C+L D      ++ 
Sbjct: 885  ISSEGARRLAANRTLVSLDLRGNTIDVAAARALANAEPLASLNVSDCRLDDAVACALAES 944

Query: 252  GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
             +L  L++ +N ++      L     L SL++    IG EG   L    +L  L+    +
Sbjct: 945  RTLTSLDVSWNRLSHRAARALADNPVLASLDISHNDIGPEGAQALADSASLTILDARANR 1004

Query: 312  VGSSGLRHLSGLTNLE 327
            +G +G R L   T + 
Sbjct: 1005 IGEAGARLLEANTRMR 1020



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 124/300 (41%), Gaps = 66/300 (22%)

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
           D + LSGL +   L+            +LKG    TL +L+  P T            L 
Sbjct: 94  DRRALSGLRDHPHLES----------VHLKG--DFTLADLKALPTT------------LR 129

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
           +L+L+ C             GS K             + +L GL  LESLN+    IGD 
Sbjct: 130 HLDLSEC------------TGSAKSF---------RAIAYLAGLP-LESLNVAGAEIGDG 167

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
           G   L    +LK L  +   + +SG R L+    LES++L+   I D   + LAG  SL+
Sbjct: 168 GARLLAANPSLKSLNAASGGISASGARMLAESPTLESLDLTQNAIGDAGAQALAGSRSLR 227

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDL------------------FGARITDSGAAYLR 393
            L +    +TD G  AL     L  LDL                      IT  GA  L 
Sbjct: 228 HLAVRNGLVTDVGTRALALNPALVSLDLGNLVTETGNQVEQDGYDKTANNITAQGAWALA 287

Query: 394 NFKNLRSLEICGGGL-TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
             ++L+SL + G  L  D GV+ +    +LT LN++   N+T  + + ++    L SL+V
Sbjct: 288 QNRSLKSLSVQGNDLCGDDGVRALARNRTLTSLNVAF-TNMTSASAKALADNPVLTSLSV 346



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 96/199 (48%), Gaps = 6/199 (3%)

Query: 268 CLVHLKGLT-NLESLNLDSC---GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
            L  L+ L  ++  L+L  C    + + GL  L  L  L  L+LSDT +G+ G + L+  
Sbjct: 622 SLADLRALPPSVRHLDLSGCTGSAVSEAGLAYLARLP-LASLDLSDTGIGNRGAQALAAS 680

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
            +L S+NLS  GI       L   + L +L++ A  I + G  AL S   LT L+L    
Sbjct: 681 ASLTSLNLSGNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALASSRSLTSLELRDTG 740

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
           I D G   L     LRSL+I G  L+D     +    +LT L  +  C LT+   + ++ 
Sbjct: 741 IEDGGIEALAANTVLRSLDISGNDLSDQSAAALAANRTLTSLK-ANGCGLTNDMAQQLAR 799

Query: 444 LTGLVSLNVSNSRITSAGL 462
           +  L +L V ++ I  AG+
Sbjct: 800 IRSLRTLEVGSNSIGDAGV 818


>gi|290976088|ref|XP_002670773.1| predicted protein [Naegleria gruberi]
 gi|284084335|gb|EFC38029.1| predicted protein [Naegleria gruberi]
          Length = 681

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 132/274 (48%), Gaps = 25/274 (9%)

Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
           L  L++ +C  I+D ++  +S +  LK L +S ++ +   +  +K +++LT+L++    +
Sbjct: 415 LRRLHVVFCK-ISDREISVISQMKQLKELNVSGNRFSFESVCKIKDMKQLTILDMSYTKL 473

Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
               ++ +S + +L  L +N   L   G E  +++  L+ L +G N I DE +  +  + 
Sbjct: 474 KCLDVEVVSGMRNLTSLRINDNDLGIQGAELIAQLDQLRELFIGSNNIGDEGMYSISHMK 533

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
           NL  L++ S GIG+E                     G++ +  L GLT    IN+ F  I
Sbjct: 534 NLTKLDVSSNGIGEE---------------------GANSISQLKGLT---FINVGFNLI 569

Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
                  +  L  L +L ++  +I  TG   ++ +  +T LD+    I D GA Y+   +
Sbjct: 570 GQQGAESIGELEQLTTLLINNCEIGPTGAKFISKMQRVTELDISLNDIQDEGAHYISELE 629

Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
            L  L +    +TD G+K I  + +L LL++S N
Sbjct: 630 KLSILYVNNNEITDEGLKAITQMKNLQLLDVSGN 663



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 133/284 (46%), Gaps = 4/284 (1%)

Query: 186 QISCSKVTDSGIAYLKGL---QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           Q     V DS     K +   + L  L++  C ++   +  +S +  L  LN++  + S 
Sbjct: 392 QTKSFSVVDSAFDRSKSIARCEHLRRLHVVFCKISDREISVISQMKQLKELNVSGNRFSF 451

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           +   K   +  L +L++ + ++    +  + G+ NL SL ++   +G +G   +  L  L
Sbjct: 452 ESVCKIKDMKQLTILDMSYTKLKCLDVEVVSGMRNLTSLRINDNDLGIQGAELIAQLDQL 511

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
           + L +    +G  G+  +S + NL  +++S  GI +     ++ L  L  +N+    I  
Sbjct: 512 RELFIGSNNIGDEGMYSISHMKNLTKLDVSSNGIGEEGANSISQLKGLTFINVGFNLIGQ 571

Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
            G  ++  L  LT L +    I  +GA ++   + +  L+I    + D G  +I +L  L
Sbjct: 572 QGAESIGELEQLTTLLINNCEIGPTGAKFISKMQRVTELDISLNDIQDEGAHYISELEKL 631

Query: 423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
           ++L ++ N  +TD+ L+ I+ +  L  L+VS ++I+    +  N
Sbjct: 632 SILYVNNN-EITDEGLKAITQMKNLQLLDVSGNKISDEFSKQTN 674



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 118/247 (47%), Gaps = 1/247 (0%)

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
           S++    L  L++  C++SD      S++  LK LN+  N  + E +  +K +  L  L+
Sbjct: 408 SIARCEHLRRLHVVFCKISDREISVISQMKQLKELNVSGNRFSFESVCKIKDMKQLTILD 467

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
           +    +    +  ++G+ NL  L ++D  +G  G   ++ L  L  + +    I D  + 
Sbjct: 468 MSYTKLKCLDVEVVSGMRNLTSLRINDNDLGIQGAELIAQLDQLRELFIGSNNIGDEGMY 527

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
            ++ + +L  L++ +  I + G  +++ L GLT +++    I   GA  +   + L +L 
Sbjct: 528 SISHMKNLTKLDVSSNGIGEEGANSISQLKGLTFINVGFNLIGQQGAESIGELEQLTTLL 587

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
           I    +   G K I  +  +T L++S N ++ D+    IS L  L  L V+N+ IT  GL
Sbjct: 588 INNCEIGPTGAKFISKMQRVTELDISLN-DIQDEGAHYISELEKLSILYVNNNEITDEGL 646

Query: 463 RHLNHAR 469
           + +   +
Sbjct: 647 KAITQMK 653



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 118/252 (46%), Gaps = 12/252 (4%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNF----CIQISDGGL 99
           ++D+ + VI SQ   L  +++SG+  +   +  +KD   L  LD ++    C+ +     
Sbjct: 425 ISDREISVI-SQMKQLKELNVSGNRFSFESVCKIKDMKQLTILDMSYTKLKCLDV----- 478

Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
           E + G+ NLTSL    +N +  QG +  A L  L +L +        G+ ++  +  L  
Sbjct: 479 EVVSGMRNLTSLRIN-DNDLGIQGAELIAQLDQLRELFIGSNNIGDEGMYSISHMKNLTK 537

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
           L++   N I +     +S L  L  + +  + +   G   +  L++LT L +  C +   
Sbjct: 538 LDVS-SNGIGEEGANSISQLKGLTFINVGFNLIGQQGAESIGELEQLTTLLINNCEIGPT 596

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
               +S +  +  L+++   + D+G    S++  L +L +  NEITDE L  +  + NL+
Sbjct: 597 GAKFISKMQRVTELDISLNDIQDEGAHYISELEKLSILYVNNNEITDEGLKAITQMKNLQ 656

Query: 280 SLNLDSCGIGDE 291
            L++    I DE
Sbjct: 657 LLDVSGNKISDE 668


>gi|320166209|gb|EFW43108.1| ephrin type-B receptor 3 [Capsaspora owczarzaki ATCC 30864]
          Length = 1219

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 117/400 (29%), Positives = 169/400 (42%), Gaps = 20/400 (5%)

Query: 76  HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
           HL D    ++L FN   QI+        GL+ LT L    NN IT      FA L  L +
Sbjct: 54  HLGD----RTLSFN---QITSISANAFAGLTALTDLQLNNNN-ITIIPDYTFANLPALTE 105

Query: 136 LDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
           L L     T I     +  GL  L  LN   C  IT       + L+ L ++Q+S +++T
Sbjct: 106 LHLFFNPITSISAN--SFAGLTVLNLLNSYNCQ-ITSIAANAFTDLSKLTNMQMSGNQIT 162

Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
                   G+  L +L L G  +T+    + + L +L YL+L+  Q+S      F  + +
Sbjct: 163 SIAPNVFSGMSALKILYLNGNQITSISASAFTGLTALTYLSLDSNQISSIALNAFPGMSA 222

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
           LK+L L  N+IT         L+ L+ L L+   I        TGL  L  L L   Q+ 
Sbjct: 223 LKILRLNINQITGISAGVFTDLSALKELWLNDNQITSISANAFTGLTALTFLRLYVNQIT 282

Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
           S      + L  L ++ LS   I+  S     GL++L  L LDA QIT     A T L  
Sbjct: 283 SISPGAFTDLGALTTLILSTNKITSISENAFTGLTALTFLQLDANQITSISAGAFTDLGA 342

Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
           LT L L    IT   A        L +L +    L          L++L  L L  N  +
Sbjct: 343 LTTLILSINTITSISANAFTGLTALTALYLQQNQLDSISAIAFTGLTALRELWLQVNL-I 401

Query: 434 TDKTLELISGLTGLVSLNVSNSRITS------AGLRHLNH 467
           T  +    S LT LV + ++ +  T+       GLR+++H
Sbjct: 402 TSISANAFSDLTTLVGIYLNRNPFTTLPPGLFKGLRNVSH 441


>gi|290989200|ref|XP_002677229.1| predicted protein [Naegleria gruberi]
 gi|284090835|gb|EFC44485.1| predicted protein [Naegleria gruberi]
          Length = 308

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 118/259 (45%), Gaps = 24/259 (9%)

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
           D K    +  L +L IS + +      Y+  L KL  LN+ G  +T      LS L  L 
Sbjct: 57  DCKIFEWMKQLTNLSISYNNMNVENTKYIGQLDKLINLNINGNAITHEGAKYLSELEQLN 116

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
            L+++ C++  +G +  S++  L  LN+G N I                        G E
Sbjct: 117 TLHIDNCEIGVEGAKYLSEMKHLTNLNIGSNRI------------------------GVE 152

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
           G+ ++ GL  L  L++S+ ++G  G ++L  +  L ++++S   +    +  ++ +  L 
Sbjct: 153 GVKHIIGLSKLTFLDISNNKIGEEGAKYLREMRQLNNLDVSTNALRQQGIEYISEMKQLT 212

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
           SL++    I   G   ++ +T LT L++    I   G  ++ N K L+ L I G  + + 
Sbjct: 213 SLSIAVNLIGVEGAKHISEMTQLTKLNMNCCNIGVEGVKHIINMKQLKHLIISGNNIGNK 272

Query: 412 GVKHIKDLSSLTLLNLSQN 430
           G + I DL  LT LN+  N
Sbjct: 273 GCELILDLEQLTFLNIENN 291



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 127/269 (47%), Gaps = 3/269 (1%)

Query: 203 LQKLTLLNLEGCPVTAACLDS--LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
           LQ +  L +E     +   D      +  L  L+++   ++ +  +   ++  L  LN+ 
Sbjct: 38  LQNIATLKVEKRRSDSVVFDCKIFEWMKQLTNLSISYNNMNVENTKYIGQLDKLINLNIN 97

Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
            N IT E   +L  L  L +L++D+C IG EG   L+ + +L  L +   ++G  G++H+
Sbjct: 98  GNAITHEGAKYLSELEQLNTLHIDNCEIGVEGAKYLSEMKHLTNLNIGSNRIGVEGVKHI 157

Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
            GL+ L  +++S   I +   + L  +  L +L++    +   G+  ++ +  LT L + 
Sbjct: 158 IGLSKLTFLDISNNKIGEEGAKYLREMRQLNNLDVSTNALRQQGIEYISEMKQLTSLSIA 217

Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
              I   GA ++     L  L +    +   GVKHI ++  L  L +S N N+ +K  EL
Sbjct: 218 VNLIGVEGAKHISEMTQLTKLNMNCCNIGVEGVKHIINMKQLKHLIISGN-NIGNKGCEL 276

Query: 441 ISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           I  L  L  LN+ N+ I   G+ ++   R
Sbjct: 277 ILDLEQLTFLNIENNNIDVEGIAYIASGR 305



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 113/266 (42%), Gaps = 26/266 (9%)

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
           +  LT+LS   NN +  +  K    L  L+ L++      H G   L  L +L +L+I  
Sbjct: 64  MKQLTNLSISYNN-MNVENTKYIGQLDKLINLNINGNAITHEGAKYLSELEQLNTLHIDN 122

Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
           C  I     K LS + +L +L I  +++   G+ ++ GL KLT L++    +       L
Sbjct: 123 CE-IGVEGAKYLSEMKHLTNLNIGSNRIGVEGVKHIIGLSKLTFLDISNNKIGEEGAKYL 181

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
             +  L  L+++   L   G E  S++  L  L++  N I  E   H+  +T L  LN++
Sbjct: 182 REMRQLNNLDVSTNALRQQGIEYISEMKQLTSLSIAVNLIGVEGAKHISEMTQLTKLNMN 241

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
            C IG E                        G++H+  +  L+ + +S   I +     +
Sbjct: 242 CCNIGVE------------------------GVKHIINMKQLKHLIISGNNIGNKGCELI 277

Query: 345 AGLSSLKSLNLDARQITDTGLAALTS 370
             L  L  LN++   I   G+A + S
Sbjct: 278 LDLEQLTFLNIENNNIDVEGIAYIAS 303



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 91/213 (42%), Gaps = 25/213 (11%)

Query: 55  QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI---------------------- 92
           Q   L++++++G+ +T  G  +L +   L +L  + C                       
Sbjct: 87  QLDKLINLNINGNAITHEGAKYLSELEQLNTLHIDNCEIGVEGAKYLSEMKHLTNLNIGS 146

Query: 93  -QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
            +I   G++H+ GLS LT L    NN I  +G K    +  L  LD+        G+  +
Sbjct: 147 NRIGVEGVKHIIGLSKLTFLDI-SNNKIGEEGAKYLREMRQLNNLDVSTNALRQQGIEYI 205

Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
             + +L SL+I   N I     K +S +T L  L ++C  +   G+ ++  +++L  L +
Sbjct: 206 SEMKQLTSLSIA-VNLIGVEGAKHISEMTQLTKLNMNCCNIGVEGVKHIINMKQLKHLII 264

Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
            G  +     + +  L  L +LN+    +  +G
Sbjct: 265 SGNNIGNKGCELILDLEQLTFLNIENNNIDVEG 297


>gi|195346821|ref|XP_002039953.1| GM15616 [Drosophila sechellia]
 gi|194135302|gb|EDW56818.1| GM15616 [Drosophila sechellia]
          Length = 538

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 121/374 (32%), Positives = 188/374 (50%), Gaps = 68/374 (18%)

Query: 7   SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
           S  +FN LV  R + +V + + R  +L+DL LG                  +L S++LSG
Sbjct: 202 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 243

Query: 67  S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
             +V D  L H    D  NL++LD + C QI+D  L    +HLR   NL +L       I
Sbjct: 244 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLETLELGGCCNI 300

Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
           T  G+   A GL  L  L+L  C  I   G+ +L G         ++LE L ++ C  ++
Sbjct: 301 TNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLS 360

Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           D  +  ++ GLT+LKS+ +S C  VTDSG+ +L  + KL  LNL  C       D++S +
Sbjct: 361 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 413

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
           G  +        L++ G    S I SL V    F ++I+D+ L H+ +GL  L SL+L+ 
Sbjct: 414 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 458

Query: 286 CGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSL 341
           C I D G++ +   L  L+ L +   +++   GL+ L+  LTNL++I+L   T +S   +
Sbjct: 459 CQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGI 518

Query: 342 RKLAGLSSLKSLNL 355
             +  L  L+ LNL
Sbjct: 519 DIIMKLPKLQKLNL 532



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 110/352 (31%), Positives = 172/352 (48%), Gaps = 58/352 (16%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
           RG+  +  LS RR+      G+ A      +G  N+  ++L     +         L  L
Sbjct: 212 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSV--------DLPNL 263

Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           ++L++  C  ITD+ +  ++  L NL++L++  C  +T++G+  +  GL+KL  LNL  C
Sbjct: 264 KTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSC 323

Query: 215 PVTA-------ACLDSLSALGSL--FYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
              +       A     +A G+L   YL L  CQ LSD+     ++ + SLK +NL F  
Sbjct: 324 WHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 383

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
            +TD  L HL  +  LE LNL SC  I D G+  LT               G SG     
Sbjct: 384 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTE--------------GGSG----- 424

Query: 322 GLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLD 378
               + S+++SF   ISD +L  +A GL  L+SL+L+  QITD G+  +  +L  L +L+
Sbjct: 425 ----INSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLN 480

Query: 379 LFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
           +   +RITD G   L  +  NL+++++ G   L+  G+  I  L  L  LNL
Sbjct: 481 IGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 532



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 153/288 (53%), Gaps = 28/288 (9%)

Query: 202 GLQKLTLLNLEGCPVTAACLDSLSA----LGSLFYLNLNRC-QLSDDGCEKFSK-IGSLK 255
           G+  LT LNL GC    A ++   A    L +L  L+L+ C Q++D    + ++ + +L+
Sbjct: 232 GVPALTSLNLSGC-FNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLE 290

Query: 256 VLNLG--FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLC--------NLKC 304
            L LG   N      L+   GL  L+ LNL SC  I D+G+ +L G           L+ 
Sbjct: 291 TLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEY 350

Query: 305 LELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQI 360
           L L D Q +    L H++ GLT+L+SINLSF   ++D  L+ LA +  L+ LNL +   I
Sbjct: 351 LGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNI 410

Query: 361 TDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI- 416
           +D G+A LT   +G+  LD+ F  +I+D    ++ +    LRSL +    +TD G+  I 
Sbjct: 411 SDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIA 470

Query: 417 KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGL 462
           K L  L  LN+ Q   +TDK L+ L   LT L ++++   ++++S G+
Sbjct: 471 KALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGI 518



 Score = 45.1 bits (105), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 33/219 (15%)

Query: 274 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 324
           G+  L SLNL  C       +G    V+L  L  L    C +++DT +G    +HL  L 
Sbjct: 232 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 290

Query: 325 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLT----- 375
            LE     N++ TG+    L    GL  LK LNL +   I+D G+  L   +  T     
Sbjct: 291 TLELGGCCNITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNL 346

Query: 376 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 428
            L+  G     R++D    ++ +   +L+S  L  C   +TD+G+KH+  +  L  LNL 
Sbjct: 347 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 405

Query: 429 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL 465
              N++D  +  L  G +G+ SL+VS   +I+   L H+
Sbjct: 406 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHI 444


>gi|291001373|ref|XP_002683253.1| hypothetical protein NAEGRDRAFT_45222 [Naegleria gruberi]
 gi|284096882|gb|EFC50509.1| hypothetical protein NAEGRDRAFT_45222 [Naegleria gruberi]
          Length = 461

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 162/341 (47%), Gaps = 37/341 (10%)

Query: 67  SDVTDSGLIH---LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
            D+  +G+I    +   +NLQ L+ N C +I + G++ +  L NL  LS   N  + A+G
Sbjct: 144 KDIPKAGIIFCQAISQLTNLQKLNVNNC-KIGNLGVQFITQLGNLMELSVI-NTGMDAKG 201

Query: 124 MKAFAG-LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
           +   A  L NL KL      +    L N+K   +L SL++ +   +     K +S + NL
Sbjct: 202 LNLIATRLKNLTKLQFNGTVQHVTSLSNMK---QLTSLSMGFDVDVDVKGAKAISEMNNL 258

Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LS 241
            +L ++ +   D G+  +  + +LT L + G  +T   L  L  L  L  LNLN  +   
Sbjct: 259 TNLSLNTN---DEGLEEICKMTQLTSLKVCGFYLTTLGLKFLPRLKKLRKLNLNDHEDFG 315

Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
           ++G +  S+                        L  L SL ++  GI  +G   +T L  
Sbjct: 316 NEGAKLISE------------------------LDQLTSLEINDIGIDKKGAKFITNLKQ 351

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
           L  L +S+  + + G+++L+ L  L ++N  FT I +  ++ L+ +++LK LN+    + 
Sbjct: 352 LTSLTISNNPIFNEGVKYLTELPQLTNLNARFTKIDNEGVKYLSEMANLKILNIKRNYVQ 411

Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
           D G+ ++  +  LT LD+    I++ G A L+  K L+ L+
Sbjct: 412 DLGVESICGMKNLTELDIEQNEISEEGVAKLKEMKQLKVLK 452



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 130/273 (47%), Gaps = 7/273 (2%)

Query: 43  GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
           G++ K +++IA++  +L  +  +G   T   +  L +   L SL   F + +   G + +
Sbjct: 196 GMDAKGLNLIATRLKNLTKLQFNG---TVQHVTSLSNMKQLTSLSMGFDVDVDVKGAKAI 252

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
             ++NLT+LS   N+    +G++    +  L  L +        GL  L  L KL  LN+
Sbjct: 253 SEMNNLTNLSLNTND----EGLEEICKMTQLTSLKVCGFYLTTLGLKFLPRLKKLRKLNL 308

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
                  +   K +S L  L SL+I+   +   G  ++  L++LT L +   P+    + 
Sbjct: 309 NDHEDFGNEGAKLISELDQLTSLEINDIGIDKKGAKFITNLKQLTSLTISNNPIFNEGVK 368

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
            L+ L  L  LN    ++ ++G +  S++ +LK+LN+  N + D  +  + G+ NL  L+
Sbjct: 369 YLTELPQLTNLNARFTKIDNEGVKYLSEMANLKILNIKRNYVQDLGVESICGMKNLTELD 428

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
           ++   I +EG+  L  +  LK L+ +D +    
Sbjct: 429 IEQNEISEEGVAKLKEMKQLKVLKKADQRASKE 461



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 135/281 (48%), Gaps = 27/281 (9%)

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAY---LKGLQKLTLLNL----EGCPVTAACLDSLSA 226
           + +S LTNL+ L ++  K+ + G+ +   L  L +L+++N     +G  + A  L +L+ 
Sbjct: 155 QAISQLTNLQKLNVNNCKIGNLGVQFITQLGNLMELSVINTGMDAKGLNLIATRLKNLTK 214

Query: 227 L---GSLFYLNL--NRCQLSD-----------DGCEKFSKIGSLKVLNLGFNEITDECLV 270
           L   G++ ++    N  QL+             G +  S++ +L  L+L  N   DE L 
Sbjct: 215 LQFNGTVQHVTSLSNMKQLTSLSMGFDVDVDVKGAKAISEMNNLTNLSLNTN---DEGLE 271

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESI 329
            +  +T L SL +    +   GL  L  L  L+ L L+D +  G+ G + +S L  L S+
Sbjct: 272 EICKMTQLTSLKVCGFYLTTLGLKFLPRLKKLRKLNLNDHEDFGNEGAKLISELDQLTSL 331

Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
            ++  GI     + +  L  L SL +    I + G+  LT L  LT+L+    +I + G 
Sbjct: 332 EINDIGIDKKGAKFITNLKQLTSLTISNNPIFNEGVKYLTELPQLTNLNARFTKIDNEGV 391

Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
            YL    NL+ L I    + D GV+ I  + +LT L++ QN
Sbjct: 392 KYLSEMANLKILNIKRNYVQDLGVESICGMKNLTELDIEQN 432



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 119/239 (49%), Gaps = 22/239 (9%)

Query: 247 KF-SKIGSLKVLNLGFNEITDECLVHLKG--------------LTNLESLNLDSCGIGDE 291
           KF +++ SL++ N+   EI+ E   H+K               LTNL+ LN+++C IG+ 
Sbjct: 118 KFMTQLTSLEIPNVDLGEIS-ESYFHVKDIPKAGIIFCQAISQLTNLQKLNVNNCKIGNL 176

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSL 350
           G+  +T L NL  L + +T + + GL  ++  L NL  +  + T     SL  +  L+SL
Sbjct: 177 GVQFITQLGNLMELSVINTGMDAKGLNLIATRLKNLTKLQFNGTVQHVTSLSNMKQLTSL 236

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
            S+  D   +   G  A++ +  LT+L L      D G   +     L SL++CG  LT 
Sbjct: 237 -SMGFDV-DVDVKGAKAISEMNNLTNLSL---NTNDEGLEEICKMTQLTSLKVCGFYLTT 291

Query: 411 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
            G+K +  L  L  LNL+ + +  ++  +LIS L  L SL +++  I   G + + + +
Sbjct: 292 LGLKFLPRLKKLRKLNLNDHEDFGNEGAKLISELDQLTSLEINDIGIDKKGAKFITNLK 350


>gi|343417958|emb|CCD19884.1| leucine-rich repeat region [Trypanosoma vivax Y486]
          Length = 389

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 118/338 (34%), Positives = 174/338 (51%), Gaps = 33/338 (9%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
           L + S+L++LD + C  I+D  +  L  LS+L +L      AIT   +   + L +L  L
Sbjct: 62  LSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTAIT--DVSPLSKLSSLRML 117

Query: 137 DLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD 194
           DL  CT    G+ ++  L KL SL  +   +C   +D+ PLS L++L++L +S C+ +TD
Sbjct: 118 DLSHCT----GITDVSPLSKLSSLRTLDLSHCTGITDVSPLSELSSLRTLDLSHCTGITD 173

Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
             ++ L  L  L  L+L  C      +  LS L SL  L+L+ C    D    +   G  
Sbjct: 174 --VSPLSELSSLRTLDLSHC-TGITDVSPLSKLSSLHELDLSHCTGITDVSLLYRFFGLD 230

Query: 255 KVLNLGFNE---ITDECLVHLKGLTNLESLNLDSC-GIGD-EGLVNLTGLCNLKCLELSD 309
           K   LG +    ITD  +  L  L+ L +L+L  C GI D   L  L GLC L   +LS 
Sbjct: 231 K---LGLSHCTGITD--VSPLSKLSGLRTLDLSHCTGITDVSPLSKLGGLCEL---DLSH 282

Query: 310 TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAA 367
              G + +  LS L++L  ++LS  TGI+D S   L+ LSSL++L+L   R ITD  ++ 
Sbjct: 283 CT-GITDVSPLSKLSSLRKLDLSHCTGITDVS--PLSVLSSLRTLDLSHCRGITD--VSP 337

Query: 368 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
           L++L+GL  LDL G     SG   L +   LR L   G
Sbjct: 338 LSTLSGLEVLDLSGCTGVRSGLESLCSLSFLRYLSFLG 375



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 33/226 (14%)

Query: 32  ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
           +L+ L L    G+ D       S+ SSL ++DLS  + +TD     L   S+L  LD + 
Sbjct: 159 SLRTLDLSHCTGITDVSP---LSELSSLRTLDLSHCTGITDVS--PLSKLSSLHELDLSH 213

Query: 91  CIQISDG------------GLEHLRGLSNLTSLS-------FRRNNAITAQGMKAFAGLI 131
           C  I+D             GL H  G+++++ LS          ++      +   + L 
Sbjct: 214 CTGITDVSLLYRFFGLDKLGLSHCTGITDVSPLSKLSGLRTLDLSHCTGITDVSPLSKLG 273

Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-C 189
            L +LDL  CT    G+ ++  L KL SL  +   +C   +D+ PLS L++L++L +S C
Sbjct: 274 GLCELDLSHCT----GITDVSPLSKLSSLRKLDLSHCTGITDVSPLSVLSSLRTLDLSHC 329

Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
             +TD  ++ L  L  L +L+L GC    + L+SL +L  L YL+ 
Sbjct: 330 RGITD--VSPLSTLSGLEVLDLSGCTGVRSGLESLCSLSFLRYLSF 373



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 68/188 (36%), Positives = 109/188 (57%), Gaps = 18/188 (9%)

Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
           L  L++L  L+L  C GI D  +  L+ L +L+ L+LS    G + +  LS L++L +++
Sbjct: 16  LSVLSSLRMLDLSHCTGITD--VSPLSVLSSLRMLDLSHCT-GITDVSPLSELSSLRTLD 72

Query: 331 LSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDS 387
           LS  TGI+D S   L+ LSSL++L+L     ITD  ++ L+ L+ L  LDL     ITD 
Sbjct: 73  LSHCTGITDVS--PLSKLSSLRTLDLSHCTAITD--VSPLSKLSSLRMLDLSHCTGITD- 127

Query: 388 GAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
             + L    +LR+L++    G+TD  V  + +LSSL  L+LS    +TD  +  +S L+ 
Sbjct: 128 -VSPLSKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSS 182

Query: 447 LVSLNVSN 454
           L +L++S+
Sbjct: 183 LRTLDLSH 190



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 125/228 (54%), Gaps = 22/228 (9%)

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGD 290
           L+L+ C    D     S + SL++L+L     ITD  +  L  L++L  L+L  C GI D
Sbjct: 2   LDLSHCTGITD-VSPLSVLSSLRMLDLSHCTGITD--VSPLSVLSSLRMLDLSHCTGITD 58

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSS 349
             +  L+ L +L+ L+LS    G + +  LS L++L +++LS  T I+D S   L+ LSS
Sbjct: 59  --VSPLSELSSLRTLDLSHCT-GITDVSPLSKLSSLRTLDLSHCTAITDVS--PLSKLSS 113

Query: 350 LKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-G 406
           L+ L+L     ITD  ++ L+ L+ L  LDL     ITD   + L    +LR+L++    
Sbjct: 114 LRMLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCT 169

Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
           G+TD  V  + +LSSL  L+LS    +TD  +  +S L+ L  L++S+
Sbjct: 170 GITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLHELDLSH 213


>gi|17647819|ref|NP_523812.1| partner of paired, isoform A [Drosophila melanogaster]
 gi|194884489|ref|XP_001976275.1| GG20101 [Drosophila erecta]
 gi|10441427|gb|AAG17034.1|AF187980_1 Partner of Paired [Drosophila melanogaster]
 gi|7291460|gb|AAF46886.1| partner of paired, isoform A [Drosophila melanogaster]
 gi|21430560|gb|AAM50958.1| RE01138p [Drosophila melanogaster]
 gi|190659462|gb|EDV56675.1| GG20101 [Drosophila erecta]
 gi|220947678|gb|ACL86382.1| CG9952-PA [synthetic construct]
 gi|220957060|gb|ACL91073.1| ppa-PA [synthetic construct]
          Length = 538

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 121/374 (32%), Positives = 188/374 (50%), Gaps = 68/374 (18%)

Query: 7   SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
           S  +FN LV  R + +V + + R  +L+DL LG                  +L S++LSG
Sbjct: 202 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 243

Query: 67  S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
             +V D  L H    D  NL++LD + C QI+D  L    +HLR   NL +L       I
Sbjct: 244 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLETLELGGCCNI 300

Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
           T  G+   A GL  L  L+L  C  I   G+ +L G         ++LE L ++ C  ++
Sbjct: 301 TNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLS 360

Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           D  +  ++ GLT+LKS+ +S C  VTDSG+ +L  + KL  LNL  C       D++S +
Sbjct: 361 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 413

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
           G  +        L++ G    S I SL V    F ++I+D+ L H+ +GL  L SL+L+ 
Sbjct: 414 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 458

Query: 286 CGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSL 341
           C I D G++ +   L  L+ L +   +++   GL+ L+  LTNL++I+L   T +S   +
Sbjct: 459 CQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGI 518

Query: 342 RKLAGLSSLKSLNL 355
             +  L  L+ LNL
Sbjct: 519 DIIMKLPKLQKLNL 532



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 110/352 (31%), Positives = 172/352 (48%), Gaps = 58/352 (16%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
           RG+  +  LS RR+      G+ A      +G  N+  ++L     +         L  L
Sbjct: 212 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSV--------DLPNL 263

Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           ++L++  C  ITD+ +  ++  L NL++L++  C  +T++G+  +  GL+KL  LNL  C
Sbjct: 264 KTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSC 323

Query: 215 PVTA-------ACLDSLSALGSL--FYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
              +       A     +A G+L   YL L  CQ LSD+     ++ + SLK +NL F  
Sbjct: 324 WHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 383

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
            +TD  L HL  +  LE LNL SC  I D G+  LT               G SG     
Sbjct: 384 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTE--------------GGSG----- 424

Query: 322 GLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLD 378
               + S+++SF   ISD +L  +A GL  L+SL+L+  QITD G+  +  +L  L +L+
Sbjct: 425 ----INSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLN 480

Query: 379 LFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
           +   +RITD G   L  +  NL+++++ G   L+  G+  I  L  L  LNL
Sbjct: 481 IGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 532



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 153/288 (53%), Gaps = 28/288 (9%)

Query: 202 GLQKLTLLNLEGCPVTAACLDSLSA----LGSLFYLNLNRC-QLSDDGCEKFSK-IGSLK 255
           G+  LT LNL GC    A ++   A    L +L  L+L+ C Q++D    + ++ + +L+
Sbjct: 232 GVPALTSLNLSGC-FNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLE 290

Query: 256 VLNLG--FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLC--------NLKC 304
            L LG   N      L+   GL  L+ LNL SC  I D+G+ +L G           L+ 
Sbjct: 291 TLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEY 350

Query: 305 LELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQI 360
           L L D Q +    L H++ GLT+L+SINLSF   ++D  L+ LA +  L+ LNL +   I
Sbjct: 351 LGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNI 410

Query: 361 TDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI- 416
           +D G+A LT   +G+  LD+ F  +I+D    ++ +    LRSL +    +TD G+  I 
Sbjct: 411 SDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIA 470

Query: 417 KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGL 462
           K L  L  LN+ Q   +TDK L+ L   LT L ++++   ++++S G+
Sbjct: 471 KALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGI 518



 Score = 45.1 bits (105), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 33/219 (15%)

Query: 274 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 324
           G+  L SLNL  C       +G    V+L  L  L    C +++DT +G    +HL  L 
Sbjct: 232 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 290

Query: 325 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLT----- 375
            LE     N++ TG+    L    GL  LK LNL +   I+D G+  L   +  T     
Sbjct: 291 TLELGGCCNITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNL 346

Query: 376 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 428
            L+  G     R++D    ++ +   +L+S  L  C   +TD+G+KH+  +  L  LNL 
Sbjct: 347 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 405

Query: 429 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL 465
              N++D  +  L  G +G+ SL+VS   +I+   L H+
Sbjct: 406 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHI 444


>gi|343420997|emb|CCD18942.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
          Length = 623

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 134/399 (33%), Positives = 203/399 (50%), Gaps = 49/399 (12%)

Query: 67  SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
           +DV+   LI     SNL++LD + C  I+D  +  L  +SNL S+       IT   +  
Sbjct: 7   TDVSPLSLI-----SNLRTLDLSHCTGITD--VLPLSLMSNLCSVYLSHCTGIT--DVPP 57

Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
            + L  L  L+L  CT I   +  L  L +LE+LN+ +C  IT  D+ PLS L+ L++L 
Sbjct: 58  LSKLSRLETLNLMYCTGI-TDVSPLSKLSRLETLNLMYCTGIT--DVSPLSKLSRLETLN 114

Query: 187 -ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
            + C+ +TD  ++ L  +  L  L+L  C      L  LS + +L  L L+ C    D  
Sbjct: 115 LMYCTGITD--VSPLSLISNLRTLDLSHCTGITDVL-PLSLMSNLCSLYLSHCTGITD-V 170

Query: 246 EKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK 303
              SK+  L+ LNL +   ITD  +  L  L+ LE+LNL  C GI D   ++L    NL+
Sbjct: 171 PPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLNLMYCTGITDVSPLSLIS--NLR 226

Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITD 362
            L+LS    G + +  LS ++NL S+ LS  TGI+D  +  L+ LS L++LNL    +  
Sbjct: 227 TLDLSHCT-GITDVLPLSLMSNLCSVYLSHCTGITD--VPPLSKLSRLETLNL----MYC 279

Query: 363 TGLAALTSLTGLTHLD----LFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIK 417
           TG+  ++ L+ L+ L+    ++   ITD   + L    NL SL +    G+TD  V  + 
Sbjct: 280 TGITDVSPLSKLSRLETLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGITD--VPPLS 335

Query: 418 DLSSLTLLNLSQNCNLTDKT-------LEL--ISGLTGL 447
            LS L  LNL     +TD +       LE+  +SG TG+
Sbjct: 336 KLSRLETLNLMYCTGITDVSPLSLMSRLEMLDVSGCTGI 374



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 132/415 (31%), Positives = 198/415 (47%), Gaps = 60/415 (14%)

Query: 67  SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
           +DV+   LI     SNL++LD + C  I+D  +  L  +SNL S+       IT   +  
Sbjct: 214 TDVSPLSLI-----SNLRTLDLSHCTGITD--VLPLSLMSNLCSVYLSHCTGIT--DVPP 264

Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
            + L  L  L+L  CT I   +  L  L +LE+LN+ +C  ITD  + PLS ++NL SL 
Sbjct: 265 LSKLSRLETLNLMYCTGI-TDVSPLSKLSRLETLNLMYCTGITD--VSPLSLMSNLCSLY 321

Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDG 244
           +S C+ +TD  +  L  L +L  LNL  C  +T      LS +  L  L+++ C    D 
Sbjct: 322 LSHCTGITD--VPPLSKLSRLETLNLMYCTGITDV--SPLSLMSRLEMLDVSGCTGITD- 376

Query: 245 CEKFSKIGSLKVLNLGF-NEITD-ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
               S + +L+ L+L +   ITD   L  +  L NL  + L S  I D  L  L  +  L
Sbjct: 377 VSPLSDLSNLRTLDLSYCTGITDVSPLSEIIELANLYMIGLTS--ITDVSL--LKKVKKL 432

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQIT 361
           + L LS      + +  LS L+ LE ++L + TGI+D S   L+ LS L+   LD R  T
Sbjct: 433 EVLYLSGCT-SITDVSPLSTLSGLEKLDLRYCTGITDVS--PLSTLSGLE--KLDLRYCT 487

Query: 362 D-TGLAALTSLTGLTHLDLFGAR-ITD----------------------SGAAYLRNFKN 397
             T ++ L++L+GL  LDL G   ITD                      S    L + + 
Sbjct: 488 GITDVSPLSTLSGLGKLDLSGCTGITDVSPLSTLSRLETLDLSECPGVMSDVDSLCSLRM 547

Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
           LR L +    + DA ++ I  L  L  L+LS   ++TD     +S L+ ++ L V
Sbjct: 548 LRELRLSRLAINDAVLRDIVVLKCLRTLDLSHCTDVTD-----VSPLSTVIRLEV 597



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 124/251 (49%), Gaps = 40/251 (15%)

Query: 62  VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG-----LE----HLRGLSNLTSL 111
           +D+SG + +TD     L D SNL++LD ++C  I+D       +E    ++ GL+++T +
Sbjct: 366 LDVSGCTGITDVS--PLSDLSNLRTLDLSYCTGITDVSPLSEIIELANLYMIGLTSITDV 423

Query: 112 SFRR----------NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
           S  +          +   +   +   + L  L KLDL  CT I   +  L  L  LE L+
Sbjct: 424 SLLKKVKKLEVLYLSGCTSITDVSPLSTLSGLEKLDLRYCTGI-TDVSPLSTLSGLEKLD 482

Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
           +++C  ITD  + PLS L+ L  L +S C+ +TD  ++ L  L +L  L+L  CP   + 
Sbjct: 483 LRYCTGITD--VSPLSTLSGLGKLDLSGCTGITD--VSPLSTLSRLETLDLSECPGVMSD 538

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITD----------ECL 269
           +DSL +L  L  L L+R  ++D        +  L+ L+L    ++TD          E L
Sbjct: 539 VDSLCSLRMLRELRLSRLAINDAVLRDIVVLKCLRTLDLSHCTDVTDVSPLSTVIRLEVL 598

Query: 270 VHLKGLTNLES 280
           V L+G T L S
Sbjct: 599 V-LRGYTGLRS 608


>gi|195487977|ref|XP_002092120.1| GE11843 [Drosophila yakuba]
 gi|194178221|gb|EDW91832.1| GE11843 [Drosophila yakuba]
          Length = 533

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 121/374 (32%), Positives = 188/374 (50%), Gaps = 68/374 (18%)

Query: 7   SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
           S  +FN LV  R + +V + + R  +L+DL LG                  +L S++LSG
Sbjct: 197 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 238

Query: 67  S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
             +V D  L H    D  NL++LD + C QI+D  L    +HLR   NL +L       I
Sbjct: 239 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLETLELGGCCNI 295

Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
           T  G+   A GL  L  L+L  C  I   G+ +L G         ++LE L ++ C  ++
Sbjct: 296 TNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLS 355

Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           D  +  ++ GLT+LKS+ +S C  VTDSG+ +L  + KL  LNL  C       D++S +
Sbjct: 356 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 408

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
           G  +        L++ G    S I SL V    F ++I+D+ L H+ +GL  L SL+L+ 
Sbjct: 409 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 453

Query: 286 CGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSL 341
           C I D G++ +   L  L+ L +   +++   GL+ L+  LTNL++I+L   T +S   +
Sbjct: 454 CQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGI 513

Query: 342 RKLAGLSSLKSLNL 355
             +  L  L+ LNL
Sbjct: 514 DIIMKLPKLQKLNL 527



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 110/352 (31%), Positives = 172/352 (48%), Gaps = 58/352 (16%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
           RG+  +  LS RR+      G+ A      +G  N+  ++L     +         L  L
Sbjct: 207 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSV--------DLPNL 258

Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           ++L++  C  ITD+ +  ++  L NL++L++  C  +T++G+  +  GL+KL  LNL  C
Sbjct: 259 KTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSC 318

Query: 215 PVTA-------ACLDSLSALGSL--FYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
              +       A     +A G+L   YL L  CQ LSD+     ++ + SLK +NL F  
Sbjct: 319 WHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 378

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
            +TD  L HL  +  LE LNL SC  I D G+  LT               G SG     
Sbjct: 379 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTE--------------GGSG----- 419

Query: 322 GLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLD 378
               + S+++SF   ISD +L  +A GL  L+SL+L+  QITD G+  +  +L  L +L+
Sbjct: 420 ----INSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLN 475

Query: 379 LFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
           +   +RITD G   L  +  NL+++++ G   L+  G+  I  L  L  LNL
Sbjct: 476 IGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 527



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 156/325 (48%), Gaps = 53/325 (16%)

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
           G+  L SLN+  C  + D ++       L NLK+L +S C ++TD+ +  + + L+ L  
Sbjct: 227 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLET 286

Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
           L L GC        L     L  L +LNL  C  +SD G      IG L     GF+  T
Sbjct: 287 LELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQG------IGHLA----GFSRET 336

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
            E            +L L+  G+ D             C  LSD  +G        GLT+
Sbjct: 337 AE-----------GNLQLEYLGLQD-------------CQRLSDEALGHIA----QGLTS 368

Query: 326 LESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FG 381
           L+SINLSF   ++D  L+ LA +  L+ LNL +   I+D G+A LT   +G+  LD+ F 
Sbjct: 369 LKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFC 428

Query: 382 ARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE 439
            +I+D    ++ +    LRSL +    +TD G+  I K L  L  LN+ Q   +TDK L+
Sbjct: 429 DKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQ 488

Query: 440 -LISGLTGLVSLNVSN-SRITSAGL 462
            L   LT L ++++   ++++S G+
Sbjct: 489 TLAEDLTNLKTIDLYGCTQLSSKGI 513



 Score = 44.7 bits (104), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 33/219 (15%)

Query: 274 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 324
           G+  L SLNL  C       +G    V+L  L  L    C +++DT +G    +HL  L 
Sbjct: 227 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 285

Query: 325 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLT----- 375
            LE     N++ TG+    L    GL  LK LNL +   I+D G+  L   +  T     
Sbjct: 286 TLELGGCCNITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNL 341

Query: 376 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 428
            L+  G     R++D    ++ +   +L+S  L  C   +TD+G+KH+  +  L  LNL 
Sbjct: 342 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 400

Query: 429 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL 465
              N++D  +  L  G +G+ SL+VS   +I+   L H+
Sbjct: 401 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHI 439


>gi|320168280|gb|EFW45179.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 769

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 104/359 (28%), Positives = 155/359 (43%), Gaps = 8/359 (2%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
           QI+        GLS LT L  + N  IT     AF GL +L +L L   + T I      
Sbjct: 91  QITGLSANAFAGLSALTLLDLKGNQ-ITTIPENAFTGLASLQQLWLYTNQITSISANA-- 147

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
             GL  L  L + + N + +      +GLT L S+Q+  +++T        G+  LT L 
Sbjct: 148 FAGLSALTQLWM-YSNPLPNITANAFAGLTALNSMQLDRNQLTSIVANAFAGMPALTDLE 206

Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
           L+   +T+    + + L +L YLN+ +  ++      F+ + +L  L L  N IT     
Sbjct: 207 LQNNAITSISPSAFAGLTALTYLNMVQNHITGISANSFTGLSALNELYLSQNSITVISSN 266

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
              GLT L SL L S  I        T L  L  L L    + S      + L  L S+ 
Sbjct: 267 AFNGLTALSSLYLPSNQITSISANVFTNLPALSSLRLQSNSITSISSNAFTNLPALSSLR 326

Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
           L    I+  S      L +L +L+L   +IT   + A T+L GLT L L+  +IT   A 
Sbjct: 327 LKSNSITSISSNAFTNLPALSALDLSDNEITVIPVNAFTNLPGLTDLKLYANKITTIFAN 386

Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN--CNLTDKTLELISGLTGL 447
                  L SL++ G  +T      I  L++L  L L++N   N+       ++ LTGL
Sbjct: 387 AFSGLSVLDSLDLSGNLITVIPANAIASLTALNFLYLNENQITNIPANAFASLTALTGL 445



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 161/359 (44%), Gaps = 29/359 (8%)

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESL 160
             G+  LT L  + NNAIT+    AFAGL  L  L++ +   I G   N   GL  L  L
Sbjct: 196 FAGMPALTDLELQ-NNAITSISPSAFAGLTALTYLNMVQ-NHITGISANSFTGLSALNEL 253

Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
            +   N IT       +GLT L SL +  +++T         L  L+ L L+   +T+  
Sbjct: 254 YLSQ-NSITVISSNAFNGLTALSSLYLPSNQITSISANVFTNLPALSSLRLQSNSITSIS 312

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
            ++ + L +L  L L    ++      F+ + +L  L+L  NEIT   ++ +   TNL  
Sbjct: 313 SNAFTNLPALSSLRLKSNSITSISSNAFTNLPALSALDLSDNEIT---VIPVNAFTNLP- 368

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
                            GL +LK   L   ++ +      SGL+ L+S++LS   I+   
Sbjct: 369 -----------------GLTDLK---LYANKITTIFANAFSGLSVLDSLDLSGNLITVIP 408

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
              +A L++L  L L+  QIT+    A  SLT LT L L   ++    A        L  
Sbjct: 409 ANAIASLTALNFLYLNENQITNIPANAFASLTALTGLFLQQNQLASIDANAFAGLTALID 468

Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
           L++    +T   V     L++LT L LS N  +T  +  + + LT L  L++S ++ITS
Sbjct: 469 LDLREASITVMPVNAFTALTALTSLYLSLN-QITTISANVFASLTALNYLDLSANQITS 526


>gi|290996013|ref|XP_002680577.1| predicted protein [Naegleria gruberi]
 gi|284094198|gb|EFC47833.1| predicted protein [Naegleria gruberi]
          Length = 395

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 148/329 (44%), Gaps = 8/329 (2%)

Query: 98  GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
           G+E +  L  LT L  R    +  +G K  + L  L  LD+   +    G   +  + +L
Sbjct: 68  GVEAIGLLKQLTELDVRYC-RMGEEGSKIISKLGQLTNLDISHNSIRSKGFKFICEMKQL 126

Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
             L +++ N +  S    +  L  L  L IS + + D G   +  L++LT L++    ++
Sbjct: 127 IILKVQY-NKLEKSSSNQIEDLKQLTKLDISGNNIDDEGAKSIGQLKQLTKLDISVNYLS 185

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
              +  LS L  L YLN++   + ++  +    +  L  LN+G N++  E    +  + +
Sbjct: 186 NVGVKHLSDLQQLIYLNVSYNDVDEEVAKDIYNMKKLSKLNIGGNDLNIESFSMIGKMDH 245

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           L+ L     G+G++G   ++ L +L  L++S+ Q+  +G   LS + +L  +++ F  I 
Sbjct: 246 LKKLEFGVVGLGNDGFEFISKLKHLTMLDISENQINDNGAELLSRMEHLTKLDVGFNSIG 305

Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
           D  +R ++ L  L  LN    +  + G   ++ +  LT L +   +  D G   +   KN
Sbjct: 306 DRGIRSISMLKKLTDLNARNNEFGNEGAKYISEMMQLTILQVDENKFGDEGIIAITKMKN 365

Query: 398 LRSLEICGGGLTDAG------VKHIKDLS 420
           L+ L I    +   G       KHI  L 
Sbjct: 366 LKKLRIFSEYMDKEGKDALLNTKHITKLK 394



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 138/297 (46%), Gaps = 2/297 (0%)

Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
           T +D++P+     L  L IS + +   G+  +  L++LT L++  C +       +S LG
Sbjct: 42  TFNDIEPIGKFKQLTILNISDNPIM-KGVEAIGLLKQLTELDVRYCRMGEEGSKIISKLG 100

Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
            L  L+++   +   G +   ++  L +L + +N++       ++ L  L  L++    I
Sbjct: 101 QLTNLDISHNSIRSKGFKFICEMKQLIILKVQYNKLEKSSSNQIEDLKQLTKLDISGNNI 160

Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
            DEG  ++  L  L  L++S   + + G++HLS L  L  +N+S+  + +   + +  + 
Sbjct: 161 DDEGAKSIGQLKQLTKLDISVNYLSNVGVKHLSDLQQLIYLNVSYNDVDEEVAKDIYNMK 220

Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
            L  LN+    +     + +  +  L  L+     + + G  ++   K+L  L+I    +
Sbjct: 221 KLSKLNIGGNDLNIESFSMIGKMDHLKKLEFGVVGLGNDGFEFISKLKHLTMLDISENQI 280

Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
            D G + +  +  LT L++  N  + D+ +  IS L  L  LN  N+   + G +++
Sbjct: 281 NDNGAELLSRMEHLTKLDVGFNS-IGDRGIRSISMLKKLTDLNARNNEFGNEGAKYI 336



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 139/310 (44%), Gaps = 3/310 (0%)

Query: 153 GLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
           GL+K L  L++++C  + +   K +S L  L +L IS + +   G  ++  +++L +L +
Sbjct: 73  GLLKQLTELDVRYCR-MGEEGSKIISKLGQLTNLDISHNSIRSKGFKFICEMKQLIILKV 131

Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
           +   +  +  + +  L  L  L+++   + D+G +   ++  L  L++  N +++  + H
Sbjct: 132 QYNKLEKSSSNQIEDLKQLTKLDISGNNIDDEGAKSIGQLKQLTKLDISVNYLSNVGVKH 191

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
           L  L  L  LN+    + +E   ++  +  L  L +    +       +  + +L+ +  
Sbjct: 192 LSDLQQLIYLNVSYNDVDEEVAKDIYNMKKLSKLNIGGNDLNIESFSMIGKMDHLKKLEF 251

Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
              G+ +     ++ L  L  L++   QI D G   L+ +  LT LD+    I D G   
Sbjct: 252 GVVGLGNDGFEFISKLKHLTMLDISENQINDNGAELLSRMEHLTKLDVGFNSIGDRGIRS 311

Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
           +   K L  L        + G K+I ++  LT+L + +N    D+ +  I+ +  L  L 
Sbjct: 312 ISMLKKLTDLNARNNEFGNEGAKYISEMMQLTILQVDEN-KFGDEGIIAITKMKNLKKLR 370

Query: 452 VSNSRITSAG 461
           + +  +   G
Sbjct: 371 IFSEYMDKEG 380



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 110/264 (41%), Gaps = 35/264 (13%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
             L  +D+SG+++ D G   +     L  LD +    +S+ G++HL  L  L  L+   N
Sbjct: 148 KQLTKLDISGNNIDDEGAKSIGQLKQLTKLDISVNY-LSNVGVKHLSDLQQLIYLNVSYN 206

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL----ESLNIKWCNCITDSD 172
           +                  +D E    I+    N+K L KL      LNI+  + I   D
Sbjct: 207 D------------------VDEEVAKDIY----NMKKLSKLNIGGNDLNIESFSMIGKMD 244

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
                   +LK L+     + + G  ++  L+ LT+L++    +     + LS +  L  
Sbjct: 245 --------HLKKLEFGVVGLGNDGFEFISKLKHLTMLDISENQINDNGAELLSRMEHLTK 296

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           L++    + D G    S +  L  LN   NE  +E   ++  +  L  L +D    GDEG
Sbjct: 297 LDVGFNSIGDRGIRSISMLKKLTDLNARNNEFGNEGAKYISEMMQLTILQVDENKFGDEG 356

Query: 293 LVNLTGLCNLKCLELSDTQVGSSG 316
           ++ +T + NLK L +    +   G
Sbjct: 357 IIAITKMKNLKKLRIFSEYMDKEG 380


>gi|421888174|ref|ZP_16319282.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
           solanacearum K60-1]
 gi|378966463|emb|CCF96030.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
           solanacearum K60-1]
          Length = 468

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 109/435 (25%), Positives = 194/435 (44%), Gaps = 20/435 (4%)

Query: 40  QYPGVNDKWMDVIASQGSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLD-FNFCIQISDG 97
           + P +  + +  ++    + +  D+    VT+ +GL   K   N  +L+     +  +D 
Sbjct: 8   RSPPLTVQRLRAVSKSVKAAVEADIRQLVVTNRAGLAGAKRTGNYPALEKLTLAVPFTDA 67

Query: 98  GLEHLRGLSNLTSLSFRR-NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156
            L+ L     L  L   R    ITA G+ A    + LV+L+L      +G  + L G  +
Sbjct: 68  DLKGL--PPTLKELDLSRCRGGITAAGI-AHLNRLPLVRLNL------NGNRIGLAGAQR 118

Query: 157 LE------SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
           L       +L++  C  I   + + L+    L +L +S +++   G+  L   + LT L+
Sbjct: 119 LANHPTLTALDVGRCR-IGPEEARELAASARLTTLNVSRNRIGGEGVRALADCKTLTSLD 177

Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
           +    +  A    L A   L  LN+NR ++   G    +   +L  L++G N I DE + 
Sbjct: 178 VSENGLGDAEAQRLGASERLTTLNVNRNRIDVPGARALAACKTLTSLDIGGNSIGDEGVD 237

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
            L     L +LN++  G+G  G+  L     L  L +    +G  G   L+   +L +++
Sbjct: 238 ALVANAQLTTLNVERAGVGAHGVQALADCKTLTSLRIDSNNIGDEGANTLAASISLTTLH 297

Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
               GI     + LA  + L +LNL    + D G  AL + T L  L +    ++D+GA 
Sbjct: 298 SEGNGIGLAGAKALAANTMLTTLNLGHNSVGDAGAQALFANTTLVWLSVRRNGLSDAGAI 357

Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
            L   + L +L+I    + DAG + +    +LT LN+S N  + +     ++    L SL
Sbjct: 358 RLAASRTLTTLDIGDNAIKDAGARALAANRTLTTLNVSSN-EIGNAGARALAANARLKSL 416

Query: 451 NVSNSRITSAGLRHL 465
           ++ N+R+   G+R L
Sbjct: 417 DLRNNRMLEGGVRAL 431



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 163/374 (43%), Gaps = 27/374 (7%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
            L+ ++L+G+ +  +G   L +   L +LD   C +I       L   + LT+L+  RN 
Sbjct: 100 PLVRLNLNGNRIGLAGAQRLANHPTLTALDVGRC-RIGPEEARELAASARLTTLNVSRNR 158

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
            I  +G++A A    L  LD+                           N + D++ + L 
Sbjct: 159 -IGGEGVRALADCKTLTSLDVSE-------------------------NGLGDAEAQRLG 192

Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
               L +L ++ +++   G   L   + LT L++ G  +    +D+L A   L  LN+ R
Sbjct: 193 ASERLTTLNVNRNRIDVPGARALAACKTLTSLDIGGNSIGDEGVDALVANAQLTTLNVER 252

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
             +   G +  +   +L  L +  N I DE    L    +L +L+ +  GIG  G   L 
Sbjct: 253 AGVGAHGVQALADCKTLTSLRIDSNNIGDEGANTLAASISLTTLHSEGNGIGLAGAKALA 312

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
               L  L L    VG +G + L   T L  +++   G+SD    +LA   +L +L++  
Sbjct: 313 ANTMLTTLNLGHNSVGDAGAQALFANTTLVWLSVRRNGLSDAGAIRLAASRTLTTLDIGD 372

Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
             I D G  AL +   LT L++    I ++GA  L     L+SL++    + + GV+ + 
Sbjct: 373 NAIKDAGARALAANRTLTTLNVSSNEIGNAGARALAANARLKSLDLRNNRMLEGGVRALL 432

Query: 418 DLSSLTLLNLSQNC 431
              +L+ L +S NC
Sbjct: 433 ANRTLSSLGVSFNC 446



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 128/301 (42%), Gaps = 27/301 (8%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           + L ++++S + +   G+  L DC  L SLD +    + D   + L     LT+L+  RN
Sbjct: 147 ARLTTLNVSRNRIGGEGVRALADCKTLTSLDVSEN-GLGDAEAQRLGASERLTTLNVNRN 205

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             I   G +A A    L  LD+   +    G+  L    +L +LN++    +    ++ L
Sbjct: 206 R-IDVPGARALAACKTLTSLDIGGNSIGDEGVDALVANAQLTTLNVERAG-VGAHGVQAL 263

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA------------------ 218
           +    L SL+I  + + D G   L     LT L+ EG  +                    
Sbjct: 264 ADCKTLTSLRIDSNNIGDEGANTLAASISLTTLHSEGNGIGLAGAKALAANTMLTTLNLG 323

Query: 219 ------ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
                 A   +L A  +L +L++ R  LSD G  + +   +L  L++G N I D     L
Sbjct: 324 HNSVGDAGAQALFANTTLVWLSVRRNGLSDAGAIRLAASRTLTTLDIGDNAIKDAGARAL 383

Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
                L +LN+ S  IG+ G   L     LK L+L + ++   G+R L     L S+ +S
Sbjct: 384 AANRTLTTLNVSSNEIGNAGARALAANARLKSLDLRNNRMLEGGVRALLANRTLSSLGVS 443

Query: 333 F 333
           F
Sbjct: 444 F 444


>gi|320169763|gb|EFW46662.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 684

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 155/351 (44%), Gaps = 7/351 (1%)

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 159
             GL+ L SL F  NN IT+  + AF+GL  L +L L     T I        GL  L  
Sbjct: 53  FSGLTALNSL-FLSNNPITSIAVNAFSGLTALTQLSLAGNPLTTIPDN--TFTGLTALTR 109

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
           L++ +   I        +GL  L+ L ++ +++T+       GL  LT L+L    +T+ 
Sbjct: 110 LDV-YVTQIASISASAFAGLPVLEVLSLNDNQITNIASNTFTGLTALTRLSLFNNNITSI 168

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
              + + L +L YL+L   Q++      F  +  L  L+L  NEIT        GLT L 
Sbjct: 169 PASAFADLSALTYLDLAGNQMTSLSANAFIGLTELTYLSLTSNEITSISPAAFTGLTALT 228

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L++  I      +  GL +L  L + + Q+ S      +GL +L  ++L    ++  
Sbjct: 229 ELVLENNLIASISANDFAGLTSLNLLRMRNNQITSLSANGFAGLPSLTELDLDLNLMTSI 288

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
                AGL+SL  L++   QIT         L  LT L L   +IT   A       +L 
Sbjct: 289 DASAFAGLTSLNLLSVQNNQITSISANGFAGLPSLTALGLESNQITSISANAFAGLTSLN 348

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
            L + G  +T         ++SL++L+L  N  +T  +    +GLT ++ L
Sbjct: 349 FLRLEGNQITSISANAFAAVTSLSVLSLHFN-QITSFSANAFTGLTTMMYL 398



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 138/310 (44%), Gaps = 7/310 (2%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N  T       SGLT L SL +S + +T   +    GL  LT L+L G P+T    ++ +
Sbjct: 43  NLFTSVAANAFSGLTALNSLFLSNNPITSIAVNAFSGLTALTQLSLAGNPLTTIPDNTFT 102

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            L +L  L++   Q++      F+ +  L+VL+L  N+IT+       GLT L  L+L +
Sbjct: 103 GLTALTRLDVYVTQIASISASAFAGLPVLEVLSLNDNQITNIASNTFTGLTALTRLSLFN 162

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
             I          L  L  L+L+  Q+ S       GLT L  ++L+   I+  S     
Sbjct: 163 NNITSIPASAFADLSALTYLDLAGNQMTSLSANAFIGLTELTYLSLTSNEITSISPAAFT 222

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
           GL++L  L L+   I          LT L  L +   +IT   A       +L  L++  
Sbjct: 223 GLTALTELVLENNLIASISANDFAGLTSLNLLRMRNNQITSLSANGFAGLPSLTELDLDL 282

Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS------ 459
             +T         L+SL LL++ QN  +T  +    +GL  L +L + +++ITS      
Sbjct: 283 NLMTSIDASAFAGLTSLNLLSV-QNNQITSISANGFAGLPSLTALGLESNQITSISANAF 341

Query: 460 AGLRHLNHAR 469
           AGL  LN  R
Sbjct: 342 AGLTSLNFLR 351



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 97/219 (44%), Gaps = 7/219 (3%)

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
           L L  N  T        GLT L SL L +  I    +   +GL  L  L L+   + +  
Sbjct: 38  LRLHLNLFTSVAANAFSGLTALNSLFLSNNPITSIAVNAFSGLTALTQLSLAGNPLTTIP 97

Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
               +GLT L  +++  T I+  S    AGL  L+ L+L+  QIT+      T LT LT 
Sbjct: 98  DNTFTGLTALTRLDVYVTQIASISASAFAGLPVLEVLSLNDNQITNIASNTFTGLTALTR 157

Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
           L LF   IT   A+   +   L  L++ G  +T         L+ LT L+L+ N  +T  
Sbjct: 158 LSLFNNNITSIPASAFADLSALTYLDLAGNQMTSLSANAFIGLTELTYLSLTSN-EITSI 216

Query: 437 TLELISGLTGLVSLNVSNSRITS------AGLRHLNHAR 469
           +    +GLT L  L + N+ I S      AGL  LN  R
Sbjct: 217 SPAAFTGLTALTELVLENNLIASISANDFAGLTSLNLLR 255



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 124/299 (41%), Gaps = 36/299 (12%)

Query: 15  VYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQG----SSLLSVDLSGSDVT 70
           VY   +  +S  AF    + ++       +ND  +  IAS      ++L  + L  +++T
Sbjct: 112 VYVTQIASISASAFAGLPVLEVL-----SLNDNQITNIASNTFTGLTALTRLSLFNNNIT 166

Query: 71  DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
                   D S L  LD     Q++        GL+ LT LS   N  IT+    AF GL
Sbjct: 167 SIPASAFADLSALTYLDLA-GNQMTSLSANAFIGLTELTYLSLTSNE-ITSISPAAFTGL 224

Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
             L +L LE          +  GL  L  L ++  N IT       +GL +L  L +  +
Sbjct: 225 TALTELVLENNLIASISANDFAGLTSLNLLRMR-NNQITSLSANGFAGLPSLTELDLDLN 283

Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTA------ACLDSLSALG---------------- 228
            +T    +   GL  L LL+++   +T+      A L SL+ALG                
Sbjct: 284 LMTSIDASAFAGLTSLNLLSVQNNQITSISANGFAGLPSLTALGLESNQITSISANAFAG 343

Query: 229 --SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
             SL +L L   Q++      F+ + SL VL+L FN+IT        GLT +  L L+S
Sbjct: 344 LTSLNFLRLEGNQITSISANAFAAVTSLSVLSLHFNQITSFSANAFTGLTTMMYLLLNS 402


>gi|432862145|ref|XP_004069745.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oryzias latipes]
          Length = 403

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 110/337 (32%), Positives = 169/337 (50%), Gaps = 36/337 (10%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-----GLINLVKLDLERCTRIHGGLVNLKGLMKL 157
           RG+  +  LS RR+ +   QGM         G  NL    L        G   ++ +  L
Sbjct: 71  RGIKKVQILSLRRSLSYVIQGMPHIESLNLCGCFNLTDNGL--------GHAFVQDIPSL 122

Query: 158 ESLNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
             LN+  C  ITDS +  ++  L NL++L +  CS +T++G+  +  GL KL  LNL  C
Sbjct: 123 RLLNLSLCKQITDSSLGRIAQYLKNLEALDLGGCSNITNTGLLLIAWGLHKLKSLNLRSC 182

Query: 215 -PVTAACLDSLSALG--------SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
             V+   +  +S +         SL  L L  CQ L+D   +  SK +  LKVLNL F  
Sbjct: 183 RHVSDVGIGHISGMTRSAAEGCLSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCG 242

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
            I+D  ++HL  + +L SLNL SC  I D G+++L  G   L  L++S   ++G   L +
Sbjct: 243 GISDAGMIHLSHMAHLCSLNLRSCDNISDTGIMHLAMGSLQLSGLDVSFCDKIGDQSLAY 302

Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLT 375
           ++ GL  L+S++L    ISD  + R +  +  LK+LN+    +ITD GL  +   LT LT
Sbjct: 303 VAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLT 362

Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
            +DL+G  +IT  G   +     L+ L +    +TD+
Sbjct: 363 GIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTDS 399



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 165/308 (53%), Gaps = 26/308 (8%)

Query: 81  SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLD 137
            +++SL+   C  ++D GL H  ++ + +L  L+      IT   +   A  L NL  LD
Sbjct: 93  PHIESLNLCGCFNLTDNGLGHAFVQDIPSLRLLNLSLCKQITDSSLGRIAQYLKNLEALD 152

Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLKSLQI 187
           L  C+ I   G L+   GL KL+SLN++ C  ++D  +  +SG+T        +L+ L +
Sbjct: 153 LGGCSNITNTGLLLIAWGLHKLKSLNLRSCRHVSDVGIGHISGMTRSAAEGCLSLEKLTL 212

Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
             C K+TD  + ++ KGL KL +LNL  C  ++ A +  LS +  L  LNL  C  +SD 
Sbjct: 213 QDCQKLTDLSLKHVSKGLNKLKVLNLSFCGGISDAGMIHLSHMAHLCSLNLRSCDNISDT 272

Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-G 298
           G    + +GSL++  L++ F ++I D+ L ++ +GL  L+SL+L SC I D+G+  +   
Sbjct: 273 GIMHLA-MGSLQLSGLDVSFCDKIGDQSLAYVAQGLYQLKSLSLCSCHISDDGINRMVRQ 331

Query: 299 LCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 355
           +  LK L +    ++   GL  ++  LT L  I+L   T I+   L ++  L  LK LNL
Sbjct: 332 MHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNL 391

Query: 356 DARQITDT 363
              Q+TD+
Sbjct: 392 GLWQMTDS 399



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 161/315 (51%), Gaps = 44/315 (13%)

Query: 176 LSGLTNLKSLQI-SCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           + G+ +++SL +  C  +TD+G+  A+++ +  L LLNL  C          S+LG +  
Sbjct: 89  IQGMPHIESLNLCGCFNLTDNGLGHAFVQDIPSLRLLNLSLCKQITD-----SSLGRIAQ 143

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDE 291
              N   L   GC   +  G L +                 GL  L+SLNL SC  + D 
Sbjct: 144 YLKNLEALDLGGCSNITNTGLLLIA---------------WGLHKLKSLNLRSCRHVSDV 188

Query: 292 GLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGS 340
           G+ +++G+         +L+ L L D Q +    L+H+S GL  L+ +NLSF G ISD  
Sbjct: 189 GIGHISGMTRSAAEGCLSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCGGISDAG 248

Query: 341 LRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNF 395
           +  L+ ++ L SLNL +   I+DTG+   A+ SL  L+ LD+ F  +I D   AY+ +  
Sbjct: 249 MIHLSHMAHLCSLNLRSCDNISDTGIMHLAMGSLQ-LSGLDVSFCDKIGDQSLAYVAQGL 307

Query: 396 KNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVS 453
             L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  LT L  +++ 
Sbjct: 308 YQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLY 367

Query: 454 N-SRITSAGLRHLNH 467
             ++IT  GL  +  
Sbjct: 368 GCTKITKRGLERITQ 382



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 29/204 (14%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           +TD  L H+ K  + L+ L+ +FC  ISD G+ HL  +++L SL+ R  + I+  G+   
Sbjct: 218 LTDLSLKHVSKGLNKLKVLNLSFCGGISDAGMIHLSHMAHLCSLNLRSCDNISDTGIMHL 277

Query: 128 A-GLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           A G + L  LD+  C +I         +GL +L+SL++  C+   D   + +  +  LK+
Sbjct: 278 AMGSLQLSGLDVSFCDKIGDQSLAYVAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKT 337

Query: 185 LQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           L I  C ++TD G+  +   L +LT ++L GC                        +++ 
Sbjct: 338 LNIGQCVRITDKGLELIADHLTQLTGIDLYGCT-----------------------KITK 374

Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
            G E+ +++  LKVLNLG  ++TD
Sbjct: 375 RGLERITQLPCLKVLNLGLWQMTD 398


>gi|410963525|ref|XP_003988315.1| PREDICTED: F-box/LRR-repeat protein 14, partial [Felis catus]
          Length = 411

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 169/317 (53%), Gaps = 48/317 (15%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 77  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 114

Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 115 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 174

Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 175 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 234

Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 235 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 293

Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 294 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 353

Query: 452 VSN-SRITSAGLRHLNH 467
           +   +RIT  GL  +  
Sbjct: 354 LYGCTRITKRGLERITQ 370



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 99/311 (31%), Positives = 167/311 (53%), Gaps = 32/311 (10%)

Query: 81  SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLD 137
           +N++SL+ + C  ++D GL H  ++ + +L +L+      IT   +   A  +  L  L+
Sbjct: 81  ANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLE 140

Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQI 187
           L  C+ I   G L+   GL +L+SLN++ C  ++D  +  L+G+T         L+ L +
Sbjct: 141 LGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTL 200

Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
             C K+TD  + ++ +GL  L LLNL  C  ++ A L  LS +GSL  LNL  C  +SD 
Sbjct: 201 QDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDT 260

Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL----VN 295
           G    + +GSL++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+G+      
Sbjct: 261 GIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQ 319

Query: 296 LTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
           + GL  L   +C+ ++D  +      HLS LT ++      T I+   L ++  L  LK 
Sbjct: 320 MHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLPCLKV 376

Query: 353 LNLDARQITDT 363
           LNL   Q+TD+
Sbjct: 377 LNLGLWQMTDS 387



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 109/349 (31%), Positives = 176/349 (50%), Gaps = 38/349 (10%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
           RG+  +  LS RR+ +   QGM       N+  L+L  C  +     G   ++ +  L +
Sbjct: 59  RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 112

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           LN+  C  ITDS +  ++    LK L++     CS +T++G+  +  GLQ+L  LNL  C
Sbjct: 113 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 170

Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
              +       A +   +A G   L  L L  CQ L+D   +  S+ +  L++LNL F  
Sbjct: 171 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 230

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
            I+D  L+HL  + +L SLNL SC  I D G+++L  G   L  L++S   +VG   L +
Sbjct: 231 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 290

Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
           ++ GL  L+S++L    ISD  + R +  +  L++LN+    +ITD GL  +   L+ LT
Sbjct: 291 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 350

Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
            +DL+G  RIT  G   +     L+ L +    +TD+  + ++D S   
Sbjct: 351 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS--EKVRDCSDFA 397



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           +TD  L H+ +  + L+ L+ +FC  ISD GL HL  + +L SL+ R  + I+  G+   
Sbjct: 206 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 265

Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           A G + L  LD+  C ++    +    +GL  L+SL++  C+   D   + +  +  L++
Sbjct: 266 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 325

Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           L I  C ++TD G+  + + L +LT ++L GC                        +++ 
Sbjct: 326 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 362

Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
            G E+ +++  LKVLNLG  ++TD
Sbjct: 363 RGLERITQLPCLKVLNLGLWQMTD 386


>gi|66807643|ref|XP_637544.1| hypothetical protein DDB_G0286583 [Dictyostelium discoideum AX4]
 gi|60465980|gb|EAL64047.1| hypothetical protein DDB_G0286583 [Dictyostelium discoideum AX4]
          Length = 722

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 119/388 (30%), Positives = 191/388 (49%), Gaps = 46/388 (11%)

Query: 47  KWMDVIASQGSSLLSVDLSG--SDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHLR 103
           K MD I + G+ + S+DLS   + V +  L++  K  + L ++ F  C  ++D GL+  R
Sbjct: 309 KKMDQIVASGARIYSLDLSHQFAVVNNDFLLNCFKYMAELSNVYFRNCENLNDIGLQIFR 368

Query: 104 GLS---NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTRIHGGLVNLKGLMKLE 158
             +   NL +L  R +N IT  G++   GL+NL +L L    CT I  GL  L  L+KL+
Sbjct: 369 QPNFEKNLKTLDLR-DNRITDVGIRNLKGLLNLEELYLGSTGCTDI--GLALLCNLLKLK 425

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVT 217
           +L++  CN ITDS M  +   T LK L +S ++VTD GI  +  L  L  L +  C  +T
Sbjct: 426 TLDVSKCN-ITDSSMDIICRFTELKFLYLSGTQVTDKGINTISKLPNLIQLYVSNCLRIT 484

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
              L  L+ LG                        +LK+L++   +I     + L+    
Sbjct: 485 NQSLFFLAYLGK-----------------------TLKLLDIFQTKIGLNGFIQLRMFKQ 521

Query: 278 LESLNLD-SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN---LSF 333
           L+ L L     I D  + +L  L NL+ L+LSD +     +  LS LTNL+S+    LS 
Sbjct: 522 LQFLVLPGRDSINDATIGHLNSLSNLRKLDLSDYR----NISDLSPLTNLQSLTELLLSN 577

Query: 334 TGISDGS-LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
           T ISD S +  +  + SL+ L+L+  ++T  G++ L +L   +       +I      YL
Sbjct: 578 TKISDNSIINSIKTMDSLEVLSLNKTEVTTEGVSQLVNLNLTSLSLS-STKIDGKSLYYL 636

Query: 393 RNFKNLRSLEICGGGLTDAGVKHIKDLS 420
              K+L+ L+I    +TD  + ++K ++
Sbjct: 637 GQMKSLQKLDISFNDITDNSMDYLKPIA 664



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 148/290 (51%), Gaps = 9/290 (3%)

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NLK+L +  +++TD GI  LKGL  L  L L     T   L  L  L  L  L++++C +
Sbjct: 375 NLKTLDLRDNRITDVGIRNLKGLLNLEELYLGSTGCTDIGLALLCNLLKLKTLDVSKCNI 434

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
           +D   +   +   LK L L   ++TD+ +  +  L NL  L + +C  I ++ L  L  L
Sbjct: 435 TDSSMDIICRFTELKFLYLSGTQVTDKGINTISKLPNLIQLYVSNCLRITNQSLFFLAYL 494

Query: 300 -CNLKCLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-D 356
              LK L++  T++G +G   L     L+ + L     I+D ++  L  LS+L+ L+L D
Sbjct: 495 GKTLKLLDIFQTKIGLNGFIQLRMFKQLQFLVLPGRDSINDATIGHLNSLSNLRKLDLSD 554

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
            R I+D  L+ LT+L  LT L L   +I+D+  + + + K + SLE+     T+   + +
Sbjct: 555 YRNISD--LSPLTNLQSLTELLLSNTKISDN--SIINSIKTMDSLEVLSLNKTEVTTEGV 610

Query: 417 KDLSSLTLLNLSQNCNLTD-KTLELISGLTGLVSLNVSNSRITSAGLRHL 465
             L +L L +LS +    D K+L  +  +  L  L++S + IT   + +L
Sbjct: 611 SQLVNLNLTSLSLSSTKIDGKSLYYLGQMKSLQKLDISFNDITDNSMDYL 660



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 130/308 (42%), Gaps = 71/308 (23%)

Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
           +Q+L  L +    +T   +D + A G+  Y        S D   +F+ + +  +LN    
Sbjct: 293 IQRLIELMVSSNRLTRKKMDQIVASGARIY--------SLDLSHQFAVVNNDFLLN---- 340

Query: 263 EITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
                C  ++  L+N+   N ++   IG +         NLK L+L D ++   G+R+L 
Sbjct: 341 -----CFKYMAELSNVYFRNCENLNDIGLQIFRQPNFEKNLKTLDLRDNRITDVGIRNLK 395

Query: 322 GLTNLESINLSFTG------------------------ISDGSLRKLAGLSSLKSLNLDA 357
           GL NLE + L  TG                        I+D S+  +   + LK L L  
Sbjct: 396 GLLNLEELYLGSTGCTDIGLALLCNLLKLKTLDVSKCNITDSSMDIICRFTELKFLYLSG 455

Query: 358 RQITDTGLAALTSLTGLTH--------------------------LDLFGARITDSGAAY 391
            Q+TD G+  ++ L  L                            LD+F  +I  +G   
Sbjct: 456 TQVTDKGINTISKLPNLIQLYVSNCLRITNQSLFFLAYLGKTLKLLDIFQTKIGLNGFIQ 515

Query: 392 LRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
           LR FK L+ L + G   + DA + H+  LS+L  L+LS   N++D  L  ++ L  L  L
Sbjct: 516 LRMFKQLQFLVLPGRDSINDATIGHLNSLSNLRKLDLSDYRNISD--LSPLTNLQSLTEL 573

Query: 451 NVSNSRIT 458
            +SN++I+
Sbjct: 574 LLSNTKIS 581


>gi|449134939|ref|ZP_21770403.1| leucine-rich repeat domain protein [Rhodopirellula europaea 6C]
 gi|448886418|gb|EMB16825.1| leucine-rich repeat domain protein [Rhodopirellula europaea 6C]
          Length = 341

 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 116/249 (46%), Gaps = 2/249 (0%)

Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
           D+ +K LS  + +  L +  +   D  +  L  L  L  L + G     A   S+S L +
Sbjct: 83  DNAVKLLSKTSTVSELFMPAAAWADGTVLRLAALPNLKRLRIYGKEFDDAKAKSISGLPA 142

Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
           L  +      ++DDG    +++  L+ ++L  + +TD+ L+ +  L  L  LNL    I 
Sbjct: 143 LIAVTFQDTSVTDDGASVLAELNELQDISLMNSPVTDKTLIAISTLPKLTKLNLRGTKIT 202

Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
            E    ++ L  L+ LEL++T  G  G+  ++ +  LE +NL  T I + SL+   G +S
Sbjct: 203 GEAFEPISKLP-LEDLELAETDFGPEGMPAIANIEGLEKVNLWLTKIDNESLKAFEGKTS 261

Query: 350 LKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
           L +LN+D    IT+  +  + SL  L  L L    +       L+  + L +L +   GL
Sbjct: 262 LTALNIDNCPAITEEAIPVIVSLPHLKLLHLGKTSVAPDALPQLKPLQELETLFVTNLGL 321

Query: 409 TDAGVKHIK 417
            +   K ++
Sbjct: 322 EEGPAKKLE 330



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 133/308 (43%), Gaps = 37/308 (12%)

Query: 48  WMDVIASQ----GSSLLSVDL---SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
           W D+  ++    G  ++ VDL   + SD+ D+ +  L   S +  L F      +DG + 
Sbjct: 54  WDDIAGAKTKLRGDDVVVVDLREVAESDL-DNAVKLLSKTSTVSEL-FMPAAAWADGTVL 111

Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
            L  L NL  L         A+  K+ +GL  L+ +  +  +                  
Sbjct: 112 RLAALPNLKRLRIYGKEFDDAKA-KSISGLPALIAVTFQDTS------------------ 152

Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
                  +TD     L+ L  L+ + +  S VTD  +  +  L KLT LNL G  +T   
Sbjct: 153 -------VTDDGASVLAELNELQDISLMNSPVTDKTLIAISTLPKLTKLNLRGTKITGEA 205

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
            + +S L  L  L L       +G    + I  L+ +NL   +I +E L   +G T+L +
Sbjct: 206 FEPISKL-PLEDLELAETDFGPEGMPAIANIEGLEKVNLWLTKIDNESLKAFEGKTSLTA 264

Query: 281 LNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
           LN+D+C  I +E +  +  L +LK L L  T V    L  L  L  LE++ ++  G+ +G
Sbjct: 265 LNIDNCPAITEEAIPVIVSLPHLKLLHLGKTSVAPDALPQLKPLQELETLFVTNLGLEEG 324

Query: 340 SLRKLAGL 347
             +KL  +
Sbjct: 325 PAKKLEAM 332



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 4/190 (2%)

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
           D  +  L   + +  L + +    D  ++ L  L NLK L +   +   +  + +SGL  
Sbjct: 83  DNAVKLLSKTSTVSELFMPAAAWADGTVLRLAALPNLKRLRIYGKEFDDAKAKSISGLPA 142

Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           L ++    T ++D     LA L+ L+ ++L    +TD  L A+++L  LT L+L G +IT
Sbjct: 143 LIAVTFQDTSVTDDGASVLAELNELQDISLMNSPVTDKTLIAISTLPKLTKLNLRGTKIT 202

Query: 386 DSGAAYLRNFK-NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
             G A+    K  L  LE+        G+  I ++  L  +NL     + +++L+   G 
Sbjct: 203 --GEAFEPISKLPLEDLELAETDFGPEGMPAIANIEGLEKVNLWL-TKIDNESLKAFEGK 259

Query: 445 TGLVSLNVSN 454
           T L +LN+ N
Sbjct: 260 TSLTALNIDN 269



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 97/226 (42%), Gaps = 1/226 (0%)

Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
           D+  +  SK  ++  L +      D  ++ L  L NL+ L +      D    +++GL  
Sbjct: 83  DNAVKLLSKTSTVSELFMPAAAWADGTVLRLAALPNLKRLRIYGKEFDDAKAKSISGLPA 142

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
           L  +   DT V   G   L+ L  L+ I+L  + ++D +L  ++ L  L  LNL   +IT
Sbjct: 143 LIAVTFQDTSVTDDGASVLAELNELQDISLMNSPVTDKTLIAISTLPKLTKLNLRGTKIT 202

Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
                 ++ L  L  L+L        G   + N + L  + +    + +  +K  +  +S
Sbjct: 203 GEAFEPISKLP-LEDLELAETDFGPEGMPAIANIEGLEKVNLWLTKIDNESLKAFEGKTS 261

Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNH 467
           LT LN+     +T++ + +I  L  L  L++  + +    L  L  
Sbjct: 262 LTALNIDNCPAITEEAIPVIVSLPHLKLLHLGKTSVAPDALPQLKP 307


>gi|301756605|ref|XP_002914145.1| PREDICTED: f-box/LRR-repeat protein 14-like [Ailuropoda
           melanoleuca]
          Length = 420

 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 169/317 (53%), Gaps = 48/317 (15%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 452 VSN-SRITSAGLRHLNH 467
           +   +RIT  GL  +  
Sbjct: 363 LYGCTRITKRGLERITQ 379



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 99/311 (31%), Positives = 167/311 (53%), Gaps = 32/311 (10%)

Query: 81  SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLD 137
           +N++SL+ + C  ++D GL H  ++ + +L +L+      IT   +   A  +  L  L+
Sbjct: 90  ANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLE 149

Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQI 187
           L  C+ I   G L+   GL +L+SLN++ C  ++D  +  L+G+T         L+ L +
Sbjct: 150 LGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTL 209

Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
             C K+TD  + ++ +GL  L LLNL  C  ++ A L  LS +GSL  LNL  C  +SD 
Sbjct: 210 QDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDT 269

Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL----VN 295
           G    + +GSL++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+G+      
Sbjct: 270 GIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQ 328

Query: 296 LTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
           + GL  L   +C+ ++D  +      HLS LT ++      T I+   L ++  L  LK 
Sbjct: 329 MHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLPCLKV 385

Query: 353 LNLDARQITDT 363
           LNL   Q+TD+
Sbjct: 386 LNLGLWQMTDS 396



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 109/349 (31%), Positives = 176/349 (50%), Gaps = 38/349 (10%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
           RG+  +  LS RR+ +   QGM       N+  L+L  C  +     G   ++ +  L +
Sbjct: 68  RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           LN+  C  ITDS +  ++    LK L++     CS +T++G+  +  GLQ+L  LNL  C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179

Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
              +       A +   +A G   L  L L  CQ L+D   +  S+ +  L++LNL F  
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 239

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
            I+D  L+HL  + +L SLNL SC  I D G+++L  G   L  L++S   +VG   L +
Sbjct: 240 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 299

Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
           ++ GL  L+S++L    ISD  + R +  +  L++LN+    +ITD GL  +   L+ LT
Sbjct: 300 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 359

Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
            +DL+G  RIT  G   +     L+ L +    +TD+  + ++D S   
Sbjct: 360 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS--EKVRDCSDFA 406



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           +TD  L H+ +  + L+ L+ +FC  ISD GL HL  + +L SL+ R  + I+  G+   
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274

Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           A G + L  LD+  C ++    +    +GL  L+SL++  C+   D   + +  +  L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334

Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           L I  C ++TD G+  + + L +LT ++L GC                        +++ 
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371

Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
            G E+ +++  LKVLNLG  ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395


>gi|290981600|ref|XP_002673518.1| predicted protein [Naegleria gruberi]
 gi|284087102|gb|EFC40774.1| predicted protein [Naegleria gruberi]
          Length = 399

 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 147/330 (44%), Gaps = 47/330 (14%)

Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
           C  +  + ++    L NLK L I  S + D    YL   + L  LN   C +    L   
Sbjct: 34  CRSVGVAILENFPYLENLKELIIDGSYIGDENAIYLSKFKCLKRLNACSCNLGPKSLQYF 93

Query: 225 SALGSLFYLNLNRCQ-----------------------LSDDGCEKFSKIGSLKVLNLGF 261
           S L SL  L L   +                       LS D  E+ S+I +L  LNL  
Sbjct: 94  SNLNSLEELTLPYNKVSGGLYHLKKLKGLKKLDLSKNVLSMDDIEQLSEISNLNHLNLNG 153

Query: 262 NEITDECLVHLKGLT----NLESLNLDSCGIGD-------------------EGLVNLTG 298
            ++  +C+ ++  L      LE+ N+D  G+G+                   E L +L  
Sbjct: 154 VDLGGKCMEYISKLPLITLELEASNIDEIGLGNISQITTLSKLKLFGNNFGSESLRHLVK 213

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
           L NLK L L+  ++   G+ +LS L +LE ++LS+  I +  ++ ++ L +L  L L   
Sbjct: 214 LSNLKYLSLAYNKIDDEGVEYLSLLQSLEYLSLSYNNIGNDGVQFISKLENLSQLELIRN 273

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
           +I + G+  ++ +  LT L+L    I + GA YL   K L+ L++ G  + D  ++H+  
Sbjct: 274 RIDERGVQFISKMKNLTKLNLGENPIRNIGALYLSKMKQLKGLDLDGTKIDDFSIEHLCL 333

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
           + +L  LN+ +  NL++  +E +     LV
Sbjct: 334 MKNLQYLNI-ERTNLSETKVETLKESLKLV 362



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 90/193 (46%), Gaps = 27/193 (13%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           SQ ++L  + L G++     L HL   SNL+ L   +  +I D G+E+L  L +L  LS 
Sbjct: 188 SQITTLSKLKLFGNNFGSESLRHLVKLSNLKYLSLAYN-KIDDEGVEYLSLLQSLEYLSL 246

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
             NN I   G++  + L NL +L+L R                         N I +  +
Sbjct: 247 SYNN-IGNDGVQFISKLENLSQLELIR-------------------------NRIDERGV 280

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           + +S + NL  L +  + + + G  YL  +++L  L+L+G  +    ++ L  + +L YL
Sbjct: 281 QFISKMKNLTKLNLGENPIRNIGALYLSKMKQLKGLDLDGTKIDDFSIEHLCLMKNLQYL 340

Query: 234 NLNRCQLSDDGCE 246
           N+ R  LS+   E
Sbjct: 341 NIERTNLSETKVE 353



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 120/271 (44%), Gaps = 24/271 (8%)

Query: 73  GLIHLKDCSNLQSLD-FNFCIQISDGGLEHL---------------------RGLSNLTS 110
           G   L+  SNL SL+          GGL HL                       LS +++
Sbjct: 86  GPKSLQYFSNLNSLEELTLPYNKVSGGLYHLKKLKGLKKLDLSKNVLSMDDIEQLSEISN 145

Query: 111 LSFRRNNAITAQGM-KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 169
           L+    N +   G    +   + L+ L+LE       GL N+  +  L  L + + N   
Sbjct: 146 LNHLNLNGVDLGGKCMEYISKLPLITLELEASNIDEIGLGNISQITTLSKLKL-FGNNFG 204

Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
              ++ L  L+NLK L ++ +K+ D G+ YL  LQ L  L+L    +    +  +S L +
Sbjct: 205 SESLRHLVKLSNLKYLSLAYNKIDDEGVEYLSLLQSLEYLSLSYNNIGNDGVQFISKLEN 264

Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
           L  L L R ++ + G +  SK+ +L  LNLG N I +   ++L  +  L+ L+LD   I 
Sbjct: 265 LSQLELIRNRIDERGVQFISKMKNLTKLNLGENPIRNIGALYLSKMKQLKGLDLDGTKID 324

Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
           D  + +L  + NL+ L +  T +  + +  L
Sbjct: 325 DFSIEHLCLMKNLQYLNIERTNLSETKVETL 355


>gi|115689700|ref|XP_783241.2| PREDICTED: F-box/LRR-repeat protein 13-like [Strongylocentrotus
           purpuratus]
          Length = 871

 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 129/458 (28%), Positives = 203/458 (44%), Gaps = 73/458 (15%)

Query: 20  LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL- 77
           LT+ S +A   C  LQDL + + PG+ND  M  +A   S LL +++S +++TD+ L  L 
Sbjct: 312 LTKPSFKAVGQCRNLQDLNMSECPGLNDDTMKYVAEGCSVLLYLNISFTNITDATLRLLA 371

Query: 78  KDCSNLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
           + CSNLQ L   +C + SD GL++L   RG   L  L       IT  G K  +G     
Sbjct: 372 RCCSNLQYLSLAYCKRFSDKGLQYLGTGRGGRRLVHLDLSGCPQITVNGYKNISG----- 426

Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQ-ISCSKV 192
                             G  KL+ L I  C  + D  +  ++    N++ +  +    +
Sbjct: 427 ------------------GCPKLQHLIINDCYTLRDDMIVAVAANCHNIRCISFLYTPNI 468

Query: 193 TDSGIAYLKGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
           TD  +  L   +KL  + +EG C +T A   S   LG  + ++L    +SD  C +    
Sbjct: 469 TDVALKALAVHRKLQQIRIEGNCKITDA---SFKLLGR-YCVDLRHIYVSD--CPR---- 518

Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLK------ 303
                       ITD  L  L    N+  LN+  C  I D G+ NL  G    K      
Sbjct: 519 ------------ITDAALKSLATCRNINVLNVADCIRISDNGVRNLVEGPSGPKLREMNL 566

Query: 304 --CLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQI 360
             C+ ++D  +    ++      +L   +  F+  I+D     L  + +L SL++    I
Sbjct: 567 TNCVRVTDVSI----MKITQKCYSLVYGSFCFSEHITDAGAEMLGNMPALSSLDISGCNI 622

Query: 361 TDTGLAALTSLTGLTHLDLFGA-RITDSG-AAYLRNFKNLRSLEICGG-GLTDAGVKHIK 417
           TDTGL AL +   L  + L    +ITD G   + +  ++L  L+I     LTD  +K++ 
Sbjct: 623 TDTGLGALGNCYHLRDVVLSECHQITDLGIQKFAQQCRDLDRLDISHCLQLTDQAIKNLA 682

Query: 418 D-LSSLTLLNLSQNCNLTDKTLELISGLTG-LVSLNVS 453
                L+ LN++    L+D ++  ISG+   L SLN S
Sbjct: 683 FCCRKLSFLNIAGCSQLSDMSIRYISGVCHYLQSLNFS 720



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 170/364 (46%), Gaps = 35/364 (9%)

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL--KGLMK 156
           L+H R    +  L+ +  + +T    KA     NL  L++  C  ++   +    +G   
Sbjct: 294 LQHYRPY--VLHLNIKGCSMLTKPSFKAVGQCRNLQDLNMSECPGLNDDTMKYVAEGCSV 351

Query: 157 LESLNIKWCNCITDSDMKPLSGL-TNLKSLQIS-CSKVTDSGIAYL---KGLQKLTLLNL 211
           L  LNI + N ITD+ ++ L+   +NL+ L ++ C + +D G+ YL   +G ++L  L+L
Sbjct: 352 LLYLNISFTN-ITDATLRLLARCCSNLQYLSLAYCKRFSDKGLQYLGTGRGGRRLVHLDL 410

Query: 212 EGCP-VTAACLDSLSA-LGSLFYLNLNRCQ-LSDD-------GCEKFSKIGSLKVLNLGF 261
            GCP +T     ++S     L +L +N C  L DD        C     I  L   N   
Sbjct: 411 SGCPQITVNGYKNISGGCPKLQHLIINDCYTLRDDMIVAVAANCHNIRCISFLYTPN--- 467

Query: 262 NEITDECLVHLKGLTNLESLNLD-SCGIGDEGLVNLTGLC-NLKCLELSD-TQVGSSGLR 318
             ITD  L  L     L+ + ++ +C I D     L   C +L+ + +SD  ++  + L+
Sbjct: 468 --ITDVALKALAVHRKLQQIRIEGNCKITDASFKLLGRYCVDLRHIYVSDCPRITDAALK 525

Query: 319 HLSGLTNLESINLS-FTGISDGSLRKLAGLSS---LKSLNL-DARQITDTGLAALTS-LT 372
            L+   N+  +N++    ISD  +R L    S   L+ +NL +  ++TD  +  +T    
Sbjct: 526 SLATCRNINVLNVADCIRISDNGVRNLVEGPSGPKLREMNLTNCVRVTDVSIMKITQKCY 585

Query: 373 GLTHLDL-FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
            L +    F   ITD+GA  L N   L SL+I G  +TD G+  + +   L  + LS+  
Sbjct: 586 SLVYGSFCFSEHITDAGAEMLGNMPALSSLDISGCNITDTGLGALGNCYHLRDVVLSECH 645

Query: 432 NLTD 435
            +TD
Sbjct: 646 QITD 649



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 89/175 (50%), Gaps = 28/175 (16%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRR 115
            +L S+D+SG ++TD+GL  L +C +L+ +  + C QI+D G++   +   +L  L    
Sbjct: 610 PALSSLDISGCNITDTGLGALGNCYHLRDVVLSECHQITDLGIQKFAQQCRDLDRLDISH 669

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
              +T Q +K  A            C R            KL  LNI  C+ ++D  ++ 
Sbjct: 670 CLQLTDQAIKNLAF-----------CCR------------KLSFLNIAGCSQLSDMSIRY 706

Query: 176 LSGLTN-LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSA 226
           +SG+ + L+SL  S C KV+D  + +L KGL++L  LN+  C  +T   +  LSA
Sbjct: 707 ISGVCHYLQSLNFSGCIKVSDDSMRFLRKGLKRLRNLNMLYCHLITKPTIVKLSA 761



 Score = 45.1 bits (105), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 39/228 (17%)

Query: 281 LNLDSCGIGDEGLVNLTGLC-NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTGIS 337
           LN+  C +  +      G C NL+ L +S+   +    +++++ G + L  +N+SFT I+
Sbjct: 304 LNIKGCSMLTKPSFKAVGQCRNLQDLNMSECPGLNDDTMKYVAEGCSVLLYLNISFTNIT 363

Query: 338 DGSLRKLAGL-SSLKSLNLDA-RQITDTGLAALTSLTG---LTHLDLFG-ARITDSG--- 388
           D +LR LA   S+L+ L+L   ++ +D GL  L +  G   L HLDL G  +IT +G   
Sbjct: 364 DATLRLLARCCSNLQYLSLAYCKRFSDKGLQYLGTGRGGRRLVHLDLSGCPQITVNGYKN 423

Query: 389 ------------------------AAYLRNFKNLRSLE-ICGGGLTDAGVKHIKDLSSLT 423
                                    A   N  N+R +  +    +TD  +K +     L 
Sbjct: 424 ISGGCPKLQHLIINDCYTLRDDMIVAVAANCHNIRCISFLYTPNITDVALKALAVHRKLQ 483

Query: 424 LLNLSQNCNLTDKTLELISGL-TGLVSLNVSN-SRITSAGLRHLNHAR 469
            + +  NC +TD + +L+      L  + VS+  RIT A L+ L   R
Sbjct: 484 QIRIEGNCKITDASFKLLGRYCVDLRHIYVSDCPRITDAALKSLATCR 531


>gi|291230586|ref|XP_002735244.1| PREDICTED: partner of paired-like [Saccoglossus kowalevskii]
          Length = 396

 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 118/362 (32%), Positives = 171/362 (47%), Gaps = 80/362 (22%)

Query: 82  NLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDL 138
           NLQSL+ + C  ++D GL H  +R + +LT L+      IT   +   A  + NL  LDL
Sbjct: 93  NLQSLNLSGCYNLTDVGLAHAFVREMPSLTVLNLSLCKQITDSSLGRIAQYLRNLEHLDL 152

Query: 139 ERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
             C  I   G L+   GL KL  LN++                        SC  V+DSG
Sbjct: 153 GGCCNITNTGLLLIAWGLTKLRYLNLR------------------------SCRHVSDSG 188

Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF--YLNLNRCQLSDDGCEKFSKIGSL 254
           IA+L GL K    N  G              G+LF  +L L  CQ          K+  L
Sbjct: 189 IAHLAGLTK----NDAG--------------GTLFLQHLVLQDCQ----------KLTDL 220

Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQV 312
            +LN              +GL  LESLNL  CG I D G+V+L+ + +LK L L S   +
Sbjct: 221 ALLNAA------------RGLVKLESLNLSFCGGITDSGMVHLSRMPSLKELNLRSCDNI 268

Query: 313 GSSGLRHLS-GLTNLESINLSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT 369
              G+ HL+ G   L ++++SF   + D SL  +A G+ SL S++L +  ITD G+A L 
Sbjct: 269 SDIGIAHLAEGGAYLRTLDVSFCDKVGDASLTHIAQGMYSLMSISLSSCPITDDGMARLV 328

Query: 370 -SLTGLTHLDLFG-ARITDSGAAYLR-NFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLL 425
            +L  L  L++   +RITD G   +  N + L  +++ G   +T  G++ I  L  L++L
Sbjct: 329 RTLRDLKTLNIGQCSRITDEGLGLIATNLRKLSCIDLYGCTKITTVGLEKIMQLPCLSVL 388

Query: 426 NL 427
           NL
Sbjct: 389 NL 390



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 92/277 (33%), Positives = 145/277 (52%), Gaps = 34/277 (12%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
           + D  +  IA    +L  +DL G  ++T++GL+ +    + L+ L+   C  +SD G+ H
Sbjct: 132 ITDSSLGRIAQYLRNLEHLDLGGCCNITNTGLLLIAWGLTKLRYLNLRSCRHVSDSGIAH 191

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
           L GL+        +N+A          G + L  L L+ C ++    L+N  +GL+KLES
Sbjct: 192 LAGLT--------KNDA---------GGTLFLQHLVLQDCQKLTDLALLNAARGLVKLES 234

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGC-PV 216
           LN+ +C  ITDS M  LS + +LK L + SC  ++D GIA+L +G   L  L++  C  V
Sbjct: 235 LNLSFCGGITDSGMVHLSRMPSLKELNLRSCDNISDIGIAHLAEGGAYLRTLDVSFCDKV 294

Query: 217 TAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK 273
             A L  ++  + SL  ++L+ C ++DDG  +  + +  LK LN+G  + ITDE L    
Sbjct: 295 GDASLTHIAQGMYSLMSISLSSCPITDDGMARLVRTLRDLKTLNIGQCSRITDEGL---- 350

Query: 274 GL--TNLESLN-LDSCGIGDEGLVNLTGLCNLKCLEL 307
           GL  TNL  L+ +D  G      V L  +  L CL +
Sbjct: 351 GLIATNLRKLSCIDLYGCTKITTVGLEKIMQLPCLSV 387



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 168/357 (47%), Gaps = 54/357 (15%)

Query: 134 VKLDLERC-TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSK 191
            KL L R    +   LVN +G+ +++ L++K       S    + G+ NL+SL +S C  
Sbjct: 52  AKLHLRRANPSLFPSLVN-RGIRRVQILSLK------RSLSSVVQGMHNLQSLNLSGCYN 104

Query: 192 VTDSGIA--YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
           +TD G+A  +++ +  LT+LNL  C          S+LG +     N   L   GC   +
Sbjct: 105 LTDVGLAHAFVREMPSLTVLNLSLCKQITD-----SSLGRIAQYLRNLEHLDLGGCCNIT 159

Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN------- 301
             G L +                 GLT L  LNL SC  + D G+ +L GL         
Sbjct: 160 NTGLLLIA---------------WGLTKLRYLNLRSCRHVSDSGIAHLAGLTKNDAGGTL 204

Query: 302 -LKCLELSDTQ--VGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA 357
            L+ L L D Q     + L    GL  LES+NLSF G I+D  +  L+ + SLK LNL +
Sbjct: 205 FLQHLVLQDCQKLTDLALLNAARGLVKLESLNLSFCGGITDSGMVHLSRMPSLKELNLRS 264

Query: 358 -RQITDTGLAALTSLTG-LTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV 413
              I+D G+A L      L  LD+ F  ++ D+   ++ +   +L S+ +    +TD G+
Sbjct: 265 CDNISDIGIAHLAEGGAYLRTLDVSFCDKVGDASLTHIAQGMYSLMSISLSSCPITDDGM 324

Query: 414 KH-IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN----SRITSAGLRHL 465
              ++ L  L  LN+ Q   +TD+ L LI+  T L  L+  +    ++IT+ GL  +
Sbjct: 325 ARLVRTLRDLKTLNIGQCSRITDEGLGLIA--TNLRKLSCIDLYGCTKITTVGLEKI 379


>gi|115495249|ref|NP_001069415.1| F-box/LRR-repeat protein 14 [Bos taurus]
 gi|225543352|ref|NP_598701.2| F-box/LRR-repeat protein 14 [Mus musculus]
 gi|404312677|ref|NP_001258205.1| F-box/LRR-repeat protein 14 [Rattus norvegicus]
 gi|296211085|ref|XP_002752262.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 1 [Callithrix
           jacchus]
 gi|332249161|ref|XP_003273733.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 1 [Nomascus
           leucogenys]
 gi|348555895|ref|XP_003463758.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cavia porcellus]
 gi|395845614|ref|XP_003795522.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 1 [Otolemur
           garnettii]
 gi|48428059|sp|Q8BID8.1|FXL14_MOUSE RecName: Full=F-box/LRR-repeat protein 14; AltName: Full=F-box and
           leucine-rich repeat protein 14
 gi|122144674|sp|Q17R01.1|FXL14_BOVIN RecName: Full=F-box/LRR-repeat protein 14; AltName: Full=F-box and
           leucine-rich repeat protein 14
 gi|26351129|dbj|BAC39201.1| unnamed protein product [Mus musculus]
 gi|74196388|dbj|BAE33081.1| unnamed protein product [Mus musculus]
 gi|109659305|gb|AAI18094.1| F-box and leucine-rich repeat protein 14 [Bos taurus]
 gi|119609336|gb|EAW88930.1| F-box and leucine-rich repeat protein 14, isoform CRA_c [Homo
           sapiens]
 gi|148667199|gb|EDK99615.1| F-box and leucine-rich repeat protein 14 [Mus musculus]
 gi|149049602|gb|EDM02056.1| rCG29594 [Rattus norvegicus]
 gi|296487055|tpg|DAA29168.1| TPA: F-box/LRR-repeat protein 14 [Bos taurus]
          Length = 400

 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 169/317 (53%), Gaps = 48/317 (15%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 452 VSN-SRITSAGLRHLNH 467
           +   +RIT  GL  +  
Sbjct: 363 LYGCTRITKRGLERITQ 379



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 169/315 (53%), Gaps = 32/315 (10%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
           ++  +N++SL+ + C  ++D GL H  ++ + +L +L+      IT   +   A  +  L
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
             L+L  C+ I   G L+   GL +L+SLN++ C  ++D  +  L+G+T         L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205

Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
            L +  C K+TD  + ++ +GL  L LLNL  C  ++ A L  LS +GSL  LNL  C  
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265

Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
           +SD G    + +GSL++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+G+  
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324

Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
               + GL  L   +C+ ++D  +      HLS LT ++      T I+   L ++  L 
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLP 381

Query: 349 SLKSLNLDARQITDT 363
            LK LNL   Q+TD+
Sbjct: 382 CLKVLNLGLWQMTDS 396



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 107/337 (31%), Positives = 171/337 (50%), Gaps = 36/337 (10%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
           RG+  +  LS RR+ +   QGM       N+  L+L  C  +     G   ++ +  L +
Sbjct: 68  RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           LN+  C  ITDS +  ++    LK L++     CS +T++G+  +  GLQ+L  LNL  C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179

Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
              +       A +   +A G   L  L L  CQ L+D   +  S+ +  L++LNL F  
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 239

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
            I+D  L+HL  + +L SLNL SC  I D G+++L  G   L  L++S   +VG   L +
Sbjct: 240 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 299

Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
           ++ GL  L+S++L    ISD  + R +  +  L++LN+    +ITD GL  +   L+ LT
Sbjct: 300 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 359

Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
            +DL+G  RIT  G   +     L+ L +    +TD+
Sbjct: 360 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           +TD  L H+ +  + L+ L+ +FC  ISD GL HL  + +L SL+ R  + I+  G+   
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274

Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           A G + L  LD+  C ++    +    +GL  L+SL++  C+   D   + +  +  L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334

Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           L I  C ++TD G+  + + L +LT ++L GC                        +++ 
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371

Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
            G E+ +++  LKVLNLG  ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395


>gi|126340111|ref|XP_001366661.1| PREDICTED: f-box/LRR-repeat protein 14-like [Monodelphis domestica]
          Length = 400

 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 169/317 (53%), Gaps = 48/317 (15%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 452 VSN-SRITSAGLRHLNH 467
           +   +RIT  GL  +  
Sbjct: 363 LYGCTRITKRGLERITQ 379



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 169/315 (53%), Gaps = 32/315 (10%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
           ++  +N++SL+ + C  ++D GL H  ++ + +L +L+      IT   +   A  +  L
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
             L+L  C+ I   G L+   GL +L+SLN++ C  ++D  +  L+G+T         L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205

Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
            L +  C K+TD  + ++ +GL  L LLNL  C  ++ A L  LS +GSL  LNL  C  
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265

Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
           +SD G    + +GSL++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+G+  
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324

Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
               + GL  L   +C+ ++D  +      HLS LT ++      T I+   L ++  L 
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLP 381

Query: 349 SLKSLNLDARQITDT 363
            LK LNL   Q+T++
Sbjct: 382 CLKVLNLGLWQMTES 396



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 105/329 (31%), Positives = 167/329 (50%), Gaps = 36/329 (10%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
           RG+  +  LS RR+ +   QGM       N+  L+L  C  +     G   ++ +  L +
Sbjct: 68  RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           LN+  C  ITDS +  ++    LK L++     CS +T++G+  +  GLQ+L  LNL  C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179

Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
              +       A +   +A G   L  L L  CQ L+D   +  S+ +  L++LNL F  
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 239

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
            I+D  L+HL  + +L SLNL SC  I D G+++L  G   L  L++S   +VG   L +
Sbjct: 240 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 299

Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
           ++ GL  L+S++L    ISD  + R +  +  L++LN+    +ITD GL  +   L+ LT
Sbjct: 300 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 359

Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEI 403
            +DL+G  RIT  G   +     L+ L +
Sbjct: 360 GIDLYGCTRITKRGLERITQLPCLKVLNL 388



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 103/204 (50%), Gaps = 29/204 (14%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           +TD  L H+ +  + L+ L+ +FC  ISD GL HL  + +L SL+ R  + I+  G+   
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274

Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           A G + L  LD+  C ++    +    +GL  L+SL++  C+   D   + +  +  L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334

Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           L I  C ++TD G+  + + L +LT ++L GC                        +++ 
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371

Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
            G E+ +++  LKVLNLG  ++T+
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTE 395


>gi|334119190|ref|ZP_08493277.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
           FGP-2]
 gi|333458661|gb|EGK87278.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
           FGP-2]
          Length = 489

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 102/306 (33%), Positives = 156/306 (50%), Gaps = 23/306 (7%)

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
              KL S+   + N    +D+KPL  LTNL  L +S +++ D  I  L+ L  LT L L 
Sbjct: 81  AYQKLSSIEELYLNDKKINDIKPLESLTNLTGLVLSDNQIND--IKPLESLTNLTKLYLG 138

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
              +    +  L +L +L  L L+  ++SD   +    + +L  L+L  N+  D  +  L
Sbjct: 139 NNKIKD--IKPLQSLTNLTQLGLHNTRISD--IKPLQSLTNLTKLDLSNNKTLD--IKPL 192

Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
           + LTNL  L LD+  I D  +  L  L NL  L+L   Q+    ++ L  LTNL S++L 
Sbjct: 193 QSLTNLTKLYLDNNKIKD--IKPLESLTNLTHLQLMSNQIK--DIKPLESLTNLTSLHLY 248

Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
              ISD  ++ L  L+ L  L LD  +I+D  +  L SLT LT + L   +I+D     L
Sbjct: 249 NNQISD--IKPLESLTKLTWLWLDNNKISD--IKPLKSLTNLTEIKLGSNKISDIKP--L 302

Query: 393 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
            +  NL SL +    ++D  +K ++ L+ LT L L  N     K LE ++ LTG+V   +
Sbjct: 303 ESLTNLTSLYLHNNQISD--IKPLESLTKLTSLWLINNQISDIKPLESLTNLTGIV---L 357

Query: 453 SNSRIT 458
           SN+RI+
Sbjct: 358 SNNRIS 363



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 114/374 (30%), Positives = 171/374 (45%), Gaps = 73/374 (19%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLV 134
           + D   L+SL     + +SD  +  ++ L +LT+L+  +  NN I  + +K    L NL 
Sbjct: 98  INDIKPLESLTNLTGLVLSDNQINDIKPLESLTNLTKLYLGNNKI--KDIKPLQSLTNLT 155

Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
           +L L   TRI                          SD+KPL  LTNL  L +S +K  D
Sbjct: 156 QLGLHN-TRI--------------------------SDIKPLQSLTNLTKLDLSNNKTLD 188

Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
                +K LQ LT L                   +  YL+ N+ +      +    + +L
Sbjct: 189 -----IKPLQSLTNL-------------------TKLYLDNNKIK----DIKPLESLTNL 220

Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
             L L  N+I D  +  L+ LTNL SL+L +  I D  +  L  L  L  L L + ++  
Sbjct: 221 THLQLMSNQIKD--IKPLESLTNLTSLHLYNNQISD--IKPLESLTKLTWLWLDNNKI-- 274

Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
           S ++ L  LTNL  I L    ISD  ++ L  L++L SL L   QI+D  +  L SLT L
Sbjct: 275 SDIKPLKSLTNLTEIKLGSNKISD--IKPLESLTNLTSLYLHNNQISD--IKPLESLTKL 330

Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
           T L L   +I+D     L +  NL  + +    ++D  +K ++ L+ LTLL L+ N    
Sbjct: 331 TSLWLINNQISDIKP--LESLTNLTGIVLSNNRISD--IKPLESLNKLTLLALTNNQISD 386

Query: 435 DKTLELISGLTGLV 448
            K LE ++ LTG+V
Sbjct: 387 IKPLESLTNLTGIV 400



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 146/327 (44%), Gaps = 63/327 (19%)

Query: 79  DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
           D   LQSL     + + +  ++ ++ L +LT+L+  +  +   + +K    L NL  L L
Sbjct: 188 DIKPLQSLTNLTKLYLDNNKIKDIKPLESLTNLTHLQLMSNQIKDIKPLESLTNLTSLHL 247

Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
                 +  + ++K L  L  L   W +    SD+KPL  LTNL  +++  +K++D    
Sbjct: 248 -----YNNQISDIKPLESLTKLTWLWLDNNKISDIKPLKSLTNLTEIKLGSNKISD---- 298

Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVL 257
                                 L+SL+ L SL+   L+  Q+SD    E  +K+ SL ++
Sbjct: 299 -------------------IKPLESLTNLTSLY---LHNNQISDIKPLESLTKLTSLWLI 336

Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
           N   N+I+D  +  L+ LTNL  + L +  I D  +  L  L  L  L L++ Q+  S +
Sbjct: 337 N---NQISD--IKPLESLTNLTGIVLSNNRISD--IKPLESLNKLTLLALTNNQI--SDI 387

Query: 318 RHLSGLTNLESINLSFTGISD--------------------GSLRKLAGLSSLKSLNLDA 357
           + L  LTNL  I L    I D                      ++ L  L++L  L+L+ 
Sbjct: 388 KPLESLTNLTGIVLMSNQIQDIKPLQSLTNLTLLALTNNKISDIKPLQSLTNLTLLSLEK 447

Query: 358 RQITDTGLAALTSLTGLTHLDLFGARI 384
            QI+D  +  L SLT LT + L G  I
Sbjct: 448 NQISD--IKPLESLTNLTEIRLSGNPI 472


>gi|241724224|ref|XP_002413721.1| F-box/LRR-repeat protein, putative [Ixodes scapularis]
 gi|215507537|gb|EEC17029.1| F-box/LRR-repeat protein, putative [Ixodes scapularis]
          Length = 315

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 103/326 (31%), Positives = 174/326 (53%), Gaps = 38/326 (11%)

Query: 157 LESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
           LE L ++ C  ++D  ++ LS  L NL SL +S C  VTD+G+ ++  +  L  L L GC
Sbjct: 1   LEYLGLEDCALVSDLGLEYLSLRLKNLVSLDLSMCLSVTDAGLEHIAKISSLKKLTLLGC 60

Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLS---DDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
                  + L++  S+F+L   R +L+      C +    G + ++N G           
Sbjct: 61  -------EDLTS-QSMFHLATARFRLNCLIISYCNQIEDTG-IHMINRG----------- 100

Query: 272 LKGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDTQ-VGSSGLRHLSG-LTNLES 328
            +GL +L +LN+++C I D GL V    L +L  L +S+ + V   G+  ++  L  L  
Sbjct: 101 -QGLVSLTTLNVNACPITDVGLSVVAEKLRDLTALNISECEYVSKDGISVVAANLRKLRF 159

Query: 329 INLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTG---LTHLDLFGAR 383
           IN+   TG+++ SL+ LA +SSL+ +NL    +IT  G+A + S  G   +  LD+    
Sbjct: 160 INMRLCTGLTNISLKHLARMSSLEVINLKGCTKITGKGMAFMASGEGQSSVLELDVSFTS 219

Query: 384 ITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELI 441
           I D+G  Y+ +  + LRSL +CG  ++D G+  I ++L +L  L +S+   +TD  ++++
Sbjct: 220 IGDTGLRYIAQGMQKLRSLSLCGCLISDKGLTRIARNLHALNTLKISRCSRITDNGIKVV 279

Query: 442 S-GLTGLVSLNVSN-SRITSAGLRHL 465
           +  L  L  +++   SRITSAG R L
Sbjct: 280 ACNLKRLRQIDLKGCSRITSAGKRSL 305



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 166/340 (48%), Gaps = 62/340 (18%)

Query: 69  VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           V+D GL +L     NL SLD + C+ ++D GLEH+  +S+L  L+      +T+Q M   
Sbjct: 12  VSDLGLEYLSLRLKNLVSLDLSMCLSVTDAGLEHIAKISSLKKLTLLGCEDLTSQSMFHL 71

Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS---GLTNLKS 184
           A                           +L  L I +CN I D+ +  ++   GL +L +
Sbjct: 72  A-----------------------TARFRLNCLIISYCNQIEDTGIHMINRGQGLVSLTT 108

Query: 185 LQISCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNRCQ 239
           L ++   +TD G++ + + L+ LT LN+  C   +   D +S + +    L ++N+  C 
Sbjct: 109 LNVNACPITDVGLSVVAEKLRDLTALNISECEYVSK--DGISVVAANLRKLRFINMRLCT 166

Query: 240 -LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
            L++   +  +++ SL+V+NL G  +IT       KG+  + S      G G   ++   
Sbjct: 167 GLTNISLKHLARMSSLEVINLKGCTKITG------KGMAFMAS------GEGQSSVLE-- 212

Query: 298 GLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNL 355
                  L++S T +G +GLR+++ G+  L S++L    ISD  L ++A  L +L +L +
Sbjct: 213 -------LDVSFTSIGDTGLRYIAQGMQKLRSLSLCGCLISDKGLTRIARNLHALNTLKI 265

Query: 356 D-ARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL 392
               +ITD G+  +  +L  L  +DL G +RIT +G   L
Sbjct: 266 SRCSRITDNGIKVVACNLKRLRQIDLKGCSRITSAGKRSL 305



 Score = 45.1 bits (105), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 7/131 (5%)

Query: 20  LTEVSLEAF-RDCALQDLCLGQYPGVNDKWMDVIAS-QG-SSLLSVDLSGSDVTDSGLIH 76
           LT +SL+   R  +L+ + L     +  K M  +AS +G SS+L +D+S + + D+GL +
Sbjct: 168 LTNISLKHLARMSSLEVINLKGCTKITGKGMAFMASGEGQSSVLELDVSFTSIGDTGLRY 227

Query: 77  L-KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GLINL 133
           + +    L+SL    C+ ISD GL  + R L  L +L   R + IT  G+K  A  L  L
Sbjct: 228 IAQGMQKLRSLSLCGCL-ISDKGLTRIARNLHALNTLKISRCSRITDNGIKVVACNLKRL 286

Query: 134 VKLDLERCTRI 144
            ++DL+ C+RI
Sbjct: 287 RQIDLKGCSRI 297


>gi|18204097|gb|AAH21329.1| F-box and leucine-rich repeat protein 14 [Mus musculus]
          Length = 400

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 169/317 (53%), Gaps = 48/317 (15%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 452 VSN-SRITSAGLRHLNH 467
           +   +RIT  GL  +  
Sbjct: 363 LYGCTRITKRGLERITQ 379



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 169/315 (53%), Gaps = 32/315 (10%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
           ++  +N++SL+ + C  ++D GL H  ++ + +L +L+      IT   +   A  +  L
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
             L+L  C+ I   G L+   GL +L+SLN++ C  ++D  +  L+G+T         L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205

Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
            L +  C K+TD  + ++ +GL  L LLNL  C  ++ A L  LS +GSL  LNL  C  
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265

Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
           +SD G    + +GSL++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+G+  
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324

Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
               + GL  L   +C+ ++D  +      HLS LT ++      T I+   L ++  L 
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLP 381

Query: 349 SLKSLNLDARQITDT 363
            LK LNL   Q+TD+
Sbjct: 382 CLKVLNLGLWQMTDS 396



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 107/337 (31%), Positives = 171/337 (50%), Gaps = 36/337 (10%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
           RG+  +  LS RR+ +   QGM       N+  L+L  C  +     G   ++ +  L +
Sbjct: 68  RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           LN+  C  ITDS +  ++    LK L++     CS +T++G+  +  GLQ+L  LNL  C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179

Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
              +       A +   +A G   L  L L  CQ L+D   +  S+ +  L++LNL F  
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 239

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
            I+D  L+HL  + +L SLNL SC  I D G+++L  G   L  L++S   +VG   L +
Sbjct: 240 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 299

Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
           ++ GL  L+S++L    ISD  + R +  +  L++LN+    +ITD GL  +   L+ LT
Sbjct: 300 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 359

Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
            +DL+G  RIT  G   +     L+ L +    +TD+
Sbjct: 360 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           +TD  L H+ +  + L+ L+ +FC  ISD GL HL  + +L SL+ R  + I+  G+   
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274

Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           A G + L  LD+  C ++    +    +GL  L+SL++  C+   D   + +  +  L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334

Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           L I  C ++TD G+  + + L +LT ++L GC                        +++ 
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371

Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
            G E+ +++  LKVLNLG  ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395


>gi|320163275|gb|EFW40174.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 989

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 177/399 (44%), Gaps = 42/399 (10%)

Query: 4   RDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVD 63
           +++  Q+  +LV  + L++ ++  F  C LQ + L  YP                     
Sbjct: 460 QEVGMQLMAQLVRDKQLSDKNMGVFLPCHLQVIRLDAYPY-------------------- 499

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF---RRNNAIT 120
                VT+  L  ++  S LQ L       ++  G+ H+ GL+NL  L     R N+   
Sbjct: 500 -----VTNELLCAMRFFSLLQELSIRSAEFVTHVGINHIAGLNNLRVLDLGITRLND--- 551

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL-MKLESLNIKWCNCITDSDMKPLSGL 179
            Q M   + L  L  L+LER      GL  L  L   L+ L+I  C+ +T+  +  L+  
Sbjct: 552 -QAMPTISQL-PLTVLNLERTLITDSGLARLAPLGATLQHLDISDCSKLTERGLALLAAF 609

Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
             L++L I+   +TD G   L    +L  LNL    +    LDS+     L +L+L   +
Sbjct: 610 PQLRTLAIAGLPLTDVG--RLSNFPELRSLNLARTAIVEGKLDSIRRYIHLVHLSLANTK 667

Query: 240 LSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNL-DSCGIGDEGLVNLT 297
           L D+       + +L  L L    +I +  + H+  L  L  L+L D   + DEG+  ++
Sbjct: 668 LGDNDVRYLQYLTNLSSLKLPSRFQIGNSSIAHISKLP-LTELDLTDYIHVTDEGIQFIS 726

Query: 298 GLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
            L   L  L LS+T++ S+G+  ++  T LE + L  T + D  +  LA L+ L++L+L 
Sbjct: 727 ALAPTLVSLSLSNTKLTSAGIPAVAACTKLEVLQLDRTPLKDDVIPLLAPLTRLRTLSLS 786

Query: 357 ARQITDTGL--AALTSLTGLTHLDLFGARITDSGAAYLR 393
              +T   +   A +  T L  L+L    I + G   LR
Sbjct: 787 RTHLTSAVVRSGAFSPFTRLESLNLSWTFIENQGLDQLR 825



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 119/223 (53%), Gaps = 8/223 (3%)

Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL-CNL 302
           G    + + +L+VL+LG   + D+ +  +  L  L  LNL+   I D GL  L  L   L
Sbjct: 529 GINHIAGLNNLRVLDLGITRLNDQAMPTISQLP-LTVLNLERTLITDSGLARLAPLGATL 587

Query: 303 KCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
           + L++SD +++   GL  L+    L +  L+  G+    + +L+    L+SLNL    I 
Sbjct: 588 QHLDISDCSKLTERGLALLAAFPQLRT--LAIAGLPLTDVGRLSNFPELRSLNLARTAIV 645

Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLS 420
           +  L ++     L HL L   ++ D+   YL+   NL SL++     + ++ + HI  L 
Sbjct: 646 EGKLDSIRRYIHLVHLSLANTKLGDNDVRYLQYLTNLSSLKLPSRFQIGNSSIAHISKL- 704

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTG-LVSLNVSNSRITSAGL 462
            LT L+L+   ++TD+ ++ IS L   LVSL++SN+++TSAG+
Sbjct: 705 PLTELDLTDYIHVTDEGIQFISALAPTLVSLSLSNTKLTSAGI 747



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 132/313 (42%), Gaps = 52/313 (16%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC-SNLQSLDFNFCIQISDGGLEHL 102
           +ND+ M  I+    ++L  +L  + +TDSGL  L    + LQ LD + C ++++ GL  L
Sbjct: 549 LNDQAMPTISQLPLTVL--NLERTLITDSGLARLAPLGATLQHLDISDCSKLTERGLALL 606

Query: 103 RGLSNLTSLSF---------RRNN------------AITAQGMKAFAGLINLVKLDLERC 141
                L +L+          R +N            AI    + +    I+LV L L   
Sbjct: 607 AAFPQLRTLAIAGLPLTDVGRLSNFPELRSLNLARTAIVEGKLDSIRRYIHLVHLSLANT 666

Query: 142 ------TRIHGGLVNLKGL------------------MKLESLNIKWCNCITDSDMKPLS 177
                  R    L NL  L                  + L  L++     +TD  ++ +S
Sbjct: 667 KLGDNDVRYLQYLTNLSSLKLPSRFQIGNSSIAHISKLPLTELDLTDYIHVTDEGIQFIS 726

Query: 178 GL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
            L   L SL +S +K+T +GI  +    KL +L L+  P+    +  L+ L  L  L+L+
Sbjct: 727 ALAPTLVSLSLSNTKLTSAGIPAVAACTKLEVLQLDRTPLKDDVIPLLAPLTRLRTLSLS 786

Query: 237 RCQLSDDGCE--KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           R  L+        FS    L+ LNL +  I ++ L  L+ L  L +LNLDS  +     +
Sbjct: 787 RTHLTSAVVRSGAFSPFTRLESLNLSWTFIENQGLDQLR-LPMLTTLNLDSTRVTANVPL 845

Query: 295 NLTGLCNLKCLEL 307
            LT L  L  + +
Sbjct: 846 MLTQLPALTTVRM 858


>gi|395845616|ref|XP_003795523.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 2 [Otolemur
           garnettii]
          Length = 401

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 169/317 (53%), Gaps = 48/317 (15%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 452 VSN-SRITSAGLRHLNH 467
           +   +RIT  GL  +  
Sbjct: 363 LYGCTRITKRGLERITQ 379



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 169/315 (53%), Gaps = 32/315 (10%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
           ++  +N++SL+ + C  ++D GL H  ++ + +L +L+      IT   +   A  +  L
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
             L+L  C+ I   G L+   GL +L+SLN++ C  ++D  +  L+G+T         L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205

Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
            L +  C K+TD  + ++ +GL  L LLNL  C  ++ A L  LS +GSL  LNL  C  
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265

Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
           +SD G    + +GSL++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+G+  
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324

Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
               + GL  L   +C+ ++D  +      HLS LT ++      T I+   L ++  L 
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLP 381

Query: 349 SLKSLNLDARQITDT 363
            LK LNL   Q+TD+
Sbjct: 382 CLKVLNLGLWQMTDS 396



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 107/337 (31%), Positives = 171/337 (50%), Gaps = 36/337 (10%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
           RG+  +  LS RR+ +   QGM       N+  L+L  C  +     G   ++ +  L +
Sbjct: 68  RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           LN+  C  ITDS +  ++    LK L++     CS +T++G+  +  GLQ+L  LNL  C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179

Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
              +       A +   +A G   L  L L  CQ L+D   +  S+ +  L++LNL F  
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 239

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
            I+D  L+HL  + +L SLNL SC  I D G+++L  G   L  L++S   +VG   L +
Sbjct: 240 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 299

Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
           ++ GL  L+S++L    ISD  + R +  +  L++LN+    +ITD GL  +   L+ LT
Sbjct: 300 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 359

Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
            +DL+G  RIT  G   +     L+ L +    +TD+
Sbjct: 360 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           +TD  L H+ +  + L+ L+ +FC  ISD GL HL  + +L SL+ R  + I+  G+   
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274

Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           A G + L  LD+  C ++    +    +GL  L+SL++  C+   D   + +  +  L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334

Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           L I  C ++TD G+  + + L +LT ++L GC                        +++ 
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371

Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
            G E+ +++  LKVLNLG  ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395


>gi|343419347|emb|CCD19427.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
          Length = 1478

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 121/380 (31%), Positives = 194/380 (51%), Gaps = 61/380 (16%)

Query: 81   SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
            S L++L+  +C  I+D  +  L  +S+L +L+      IT   +   + LI L  LDL  
Sbjct: 725  SRLETLNLMYCTGITD--VSPLSKMSSLYTLNLSYCTGIT--DVSPLSMLIRLETLDLTG 780

Query: 141  CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAY 199
            CT I   +  L  L +LE+LN+++C  IT  D+ PLS L+ L++L  + C+ +TD  ++ 
Sbjct: 781  CTGI-TDVSPLSKLSRLETLNLRYCTGIT--DVSPLSKLSRLETLNLMYCTGITD--VSP 835

Query: 200  LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
            L  L +L  LNL  C      +  LS + +L  L+L+ C                     
Sbjct: 836  LSKLSRLETLNLMYC-TGITDVSPLSLISNLRTLDLSHCT-------------------- 874

Query: 260  GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
            G  +++      L  ++NL SL L  C GI D  +  L+ L  L+ L+LS    G + + 
Sbjct: 875  GITDVSP-----LSLMSNLCSLYLSHCTGITD--VPPLSMLIRLEKLDLSGC-TGITDVS 926

Query: 319  HLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
             LS L+ LE++NL + TGI+D S   L+ LS L++LNL    +  TG+  ++ L+ L+ L
Sbjct: 927  PLSKLSRLETLNLMYCTGITDVS--PLSKLSRLETLNL----MYCTGITDVSPLSKLSRL 980

Query: 378  D----LFGARITDSGAAYLRNFKNLRSLEIC-GGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
            +    ++   ITD   + L +F NLR+L++    G+TD  V  +  L  L  L+LS    
Sbjct: 981  ETLNLMYCTGITD--VSPLSDFINLRTLDLSFYTGITD--VSPLSMLIRLENLSLSNIAG 1036

Query: 433  LTDKTLELISGLTGLVSLNV 452
            +TD     +S L+ L+ LNV
Sbjct: 1037 ITD-----VSPLSTLIRLNV 1051



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 129/398 (32%), Positives = 199/398 (50%), Gaps = 47/398 (11%)

Query: 77   LKDCSNLQSLDFNFCIQISDGG------------LEHLRGLSNLTSLS-FRRNNAITAQG 123
            L D  NL++LD +F   I+D              L ++ G+++++ LS   R N +   G
Sbjct: 997  LSDFINLRTLDLSFYTGITDVSPLSMLIRLENLSLSNIAGITDVSPLSTLIRLNVLYLSG 1056

Query: 124  ------MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
                  +   + L +L  LDL  CT I   +  L  L +LE+LN+ +C  IT  D+ PLS
Sbjct: 1057 CTGITDVSPLSKLSSLRTLDLSHCTGI-TDVSPLSKLSRLETLNLMYCTGIT--DVSPLS 1113

Query: 178  GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
             ++NL++L +S C+ +TD  ++ L  +  L  L L  C      +  LS L  L  L+L+
Sbjct: 1114 LISNLRTLDLSHCTGITD--VSPLSLMSNLCSLYLSHC-TGITDVPPLSMLIRLEKLDLS 1170

Query: 237  RCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLV 294
             C    D     SK+  L+ LNL +   ITD  +  L  ++NL SL L  C GI D  + 
Sbjct: 1171 GCTGITD-VSPLSKLSRLETLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGITD--VS 1225

Query: 295  NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSL 353
             L+ L  L+ L+LS    G + +  LS L+ LE++NL + TGI+D S   L+ LS L++L
Sbjct: 1226 PLSMLIRLEKLDLSGC-TGITDVSPLSKLSRLETLNLMYCTGITDVS--PLSKLSRLETL 1282

Query: 354  NLDARQITDTGLAALTSLTGLTHL-DLFGARITD-SGAAYLRNFKNLRSLEICG-GGLTD 410
            NL    +  TG+  ++ L+ +++L  L+ +  T  +    L     L +L +    G+TD
Sbjct: 1283 NL----MYCTGITDVSPLSLMSNLCSLYLSHCTGITDVPPLSKLSRLETLNLMYCTGITD 1338

Query: 411  AGVKHIKDLSSLTLLNLSQNCNLTD-KTLELISGLTGL 447
              V  +  LS L  LNL     +TD   L LIS L  L
Sbjct: 1339 --VSPLSKLSRLETLNLMYCTGITDVSPLSLISNLRTL 1374



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 119/382 (31%), Positives = 185/382 (48%), Gaps = 49/382 (12%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           + L+ LD + C++  D  L H  G+++++ LS                 L +L  LDL  
Sbjct: 415 ATLRDLDVSKCLRTLD--LSHCTGITDVSPLS----------------ELSSLRTLDLSH 456

Query: 141 CTRIHGGLVNLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIA 198
           CT    G+ ++  L KL SL      +C   +D+ PLS L+ L+ L +S C+ V  SG+ 
Sbjct: 457 CT----GITDVSPLSKLSSLRTFDLSHCTGITDVSPLSTLSGLEVLNLSGCTGVA-SGVD 511

Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
            L  L+ L  L L    +  A L  +  L  L  L+L+ C          S +  L+VLN
Sbjct: 512 SLCSLRMLRELRLSRLAINDAVLRDIVVLKCLRTLDLSHCT-GITNVSPLSTLSGLEVLN 570

Query: 259 L-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ--VGSS 315
           L G  +ITD  +  L  L  + +LNL  C     G+ +++ L  L  LE  +     G +
Sbjct: 571 LSGCADITD--ISPLSDLNIMHTLNLSFC----TGITDVSPLSKLSRLETLNLMYCTGIT 624

Query: 316 GLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTG 373
            +  LS ++NL +++LS  TGI+D S   L+ +S+L++L+L     ITD  +  L+ L  
Sbjct: 625 DVSPLSLISNLRTLDLSHCTGITDVS--PLSLISNLRTLDLSHCTGITD--VPPLSMLIR 680

Query: 374 LTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNC 431
           L  LDL G   ITD   + L     L +L +    G+TD  V  +  LS L  LNL    
Sbjct: 681 LEKLDLSGCTGITD--VSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLNLMYCT 736

Query: 432 NLTDKTLELISGLTGLVSLNVS 453
            +TD  +  +S ++ L +LN+S
Sbjct: 737 GITD--VSPLSKMSSLYTLNLS 756



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 129/450 (28%), Positives = 203/450 (45%), Gaps = 51/450 (11%)

Query: 21  TEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC 80
           +  SL   RDC +   CLG    V+++ +      G S L+  L+  ++TD  L  +  C
Sbjct: 217 SHTSLTVGRDCFIP--CLGV---VSEEVL-----AGVSRLT--LNKVELTDRDLWRIHKC 264

Query: 81  SNLQSLDFNFC-------IQISDGG---------LEHLRGLSNLTSLSFRRNNAITAQGM 124
           SNL++L    C        Q+  G           E +RG+S L  ++   +N +  + +
Sbjct: 265 SNLKALSIEECTGRICLGTQMPHGNSPTRENCDDTERVRGISCLEEITI--SNCMNIKEI 322

Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNL---KGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
           K    L  + +L           + N+   K +++LE     + +C   + ++PL+    
Sbjct: 323 KGLNTLACISRLRFINSNISDDCVANISENKHILELE-----FQDCANITSLRPLANSQL 377

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
           ++SL IS     +S I  L  L +L  L L    +  A L  L     L  L+L+ C   
Sbjct: 378 IESLVISNCINLESEINVLAALNRLRELRLSRLAINDATLRDLDVSKCLRTLDLSHCTGI 437

Query: 242 DDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
            D     S++ SL+ L+L     ITD  +  L  L++L + +L  C GI D  +  L+ L
Sbjct: 438 TD-VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTFDLSHCTGITD--VSPLSTL 492

Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
             L+ L LS     +SG+  L  L  L  + LS   I+D  LR +  L  L++L+L +  
Sbjct: 493 SGLEVLNLSGCTGVASGVDSLCSLRMLRELRLSRLAINDAVLRDIVVLKCLRTLDL-SHC 551

Query: 360 ITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
              T ++ L++L+GL  L+L G A ITD       N  +  +L  C  G+TD  V  +  
Sbjct: 552 TGITNVSPLSTLSGLEVLNLSGCADITDISPLSDLNIMHTLNLSFC-TGITD--VSPLSK 608

Query: 419 LSSLTLLNLSQNCNLTD-KTLELISGLTGL 447
           LS L  LNL     +TD   L LIS L  L
Sbjct: 609 LSRLETLNLMYCTGITDVSPLSLISNLRTL 638



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 108/213 (50%), Gaps = 16/213 (7%)

Query: 81   SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
            S L++L+  +C  I+D  +  L  +SNL SL       IT   +   + L  L  L+L  
Sbjct: 1277 SRLETLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGIT--DVPPLSKLSRLETLNLMY 1332

Query: 141  CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAY 199
            CT I   +  L  L +LE+LN+ +C  ITD  + PLS ++NL++L +S C+ +TD  ++ 
Sbjct: 1333 CTGI-TDVSPLSKLSRLETLNLMYCTGITD--VSPLSLISNLRTLDLSHCTGITD--VSP 1387

Query: 200  LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
            L  +  L  L L  C      +  LS L  L   +L+ C    D     SK+  L+ LNL
Sbjct: 1388 LSLMSNLCSLYLSHC-TGITDVPPLSMLIRLEKSDLSGCTGITD-VSPLSKLSRLETLNL 1445

Query: 260  GF-NEITDECLVHLKGLTNLESLNLDSC-GIGD 290
             +   ITD  +  L  ++ LE+LNL  C GI D
Sbjct: 1446 MYCTGITD--VSPLSKVSRLETLNLMYCTGITD 1476



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 70/129 (54%), Gaps = 13/129 (10%)

Query: 67   SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
            +DV+   LI     SNL++LD + C  I+D  +  L  +SNL SL       IT   +  
Sbjct: 1360 TDVSPLSLI-----SNLRTLDLSHCTGITD--VSPLSLMSNLCSLYLSHCTGIT--DVPP 1410

Query: 127  FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
             + LI L K DL  CT I   +  L  L +LE+LN+ +C  IT  D+ PLS ++ L++L 
Sbjct: 1411 LSMLIRLEKSDLSGCTGI-TDVSPLSKLSRLETLNLMYCTGIT--DVSPLSKVSRLETLN 1467

Query: 187  -ISCSKVTD 194
             + C+ +TD
Sbjct: 1468 LMYCTGITD 1476


>gi|260804809|ref|XP_002597280.1| hypothetical protein BRAFLDRAFT_260896 [Branchiostoma floridae]
 gi|229282543|gb|EEN53292.1| hypothetical protein BRAFLDRAFT_260896 [Branchiostoma floridae]
          Length = 398

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 101/313 (32%), Positives = 166/313 (53%), Gaps = 44/313 (14%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLF 231
           + G++N+ SL +S C  +TD G+  A+ + +  LT LNL  C  +T + L  ++     +
Sbjct: 87  VQGMSNIVSLNLSGCYNLTDIGLSHAFTQDVPSLTELNLSLCKQITDSSLGRIAQ----Y 142

Query: 232 YLNLNRCQLSDDGCEKFSKIG---------SLKVLNL-GFNEITDECLVHLKGLTNLESL 281
             NL R  L   GC   +  G          L+ LNL     I+D  + HL G++   + 
Sbjct: 143 LKNLERLDLG--GCCNITNTGLLLCAWGLLKLRYLNLRSCRHISDVGIGHLSGISKNAA- 199

Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFT-GISDG 339
                    EG ++L  LC   C +L+D       L+H+S GL  L+S+NLSF  GISDG
Sbjct: 200 ---------EGCLHLEHLCLQDCQKLTDL-----ALKHVSKGLQRLKSLNLSFCCGISDG 245

Query: 340 SLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTG-LTHLDL-FGARITDSGAAYLRN-F 395
            +  LA +SSLK LNL +   I+D G+A L   +  ++HLD+ F  ++ DS   ++ +  
Sbjct: 246 GMMYLAKMSSLKELNLRSCDNISDIGIAHLADGSATISHLDVSFCDKVGDSALGHIAHGL 305

Query: 396 KNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVS 453
            +L SL +    ++D G+ + ++ +  LT L++ Q   +TDK L LI+  LT L ++++ 
Sbjct: 306 YHLHSLSLGSCNISDEGLNRMVRSMHELTTLDIGQCYKITDKGLGLIADNLTQLTNIDLY 365

Query: 454 N-SRITSAGLRHL 465
             ++IT+AGL  +
Sbjct: 366 GCTKITTAGLERI 378



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 166/327 (50%), Gaps = 32/327 (9%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC---TRIHGGLVNLKGLMKLES 159
           RG+  +  LS RR+ +   QGM       N+V L+L  C   T I       + +  L  
Sbjct: 69  RGIRKVQILSLRRSLSYVVQGMS------NIVSLNLSGCYNLTDIGLSHAFTQDVPSLTE 122

Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC-P 215
           LN+  C  ITDS +  ++  L NL+ L +  C  +T++G+     GL KL  LNL  C  
Sbjct: 123 LNLSLCKQITDSSLGRIAQYLKNLERLDLGGCCNITNTGLLLCAWGLLKLRYLNLRSCRH 182

Query: 216 VTAACLDSLSALGS--------LFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
           ++   +  LS +          L +L L  CQ L+D   +  SK +  LK LNL F   I
Sbjct: 183 ISDVGIGHLSGISKNAAEGCLHLEHLCLQDCQKLTDLALKHVSKGLQRLKSLNLSFCCGI 242

Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS 321
           +D  +++L  +++L+ LNL SC  I D G+ +L  G   +  L++S   +VG S L H++
Sbjct: 243 SDGGMMYLAKMSSLKELNLRSCDNISDIGIAHLADGSATISHLDVSFCDKVGDSALGHIA 302

Query: 322 -GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHL 377
            GL +L S++L    ISD  L R +  +  L +L++    +ITD GL  +  +LT LT++
Sbjct: 303 HGLYHLHSLSLGSCNISDEGLNRMVRSMHELTTLDIGQCYKITDKGLGLIADNLTQLTNI 362

Query: 378 DLFG-ARITDSGAAYLRNFKNLRSLEI 403
           DL+G  +IT +G   +     L  L +
Sbjct: 363 DLYGCTKITTAGLERIMQLPRLSVLNL 389



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 153/303 (50%), Gaps = 32/303 (10%)

Query: 81  SNLQSLDFNFCIQISDGGLEHL--RGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLD 137
           SN+ SL+ + C  ++D GL H   + + +LT L+      IT   +   A  + NL +LD
Sbjct: 91  SNIVSLNLSGCYNLTDIGLSHAFTQDVPSLTELNLSLCKQITDSSLGRIAQYLKNLERLD 150

Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLKSLQI 187
           L  C  I   G L+   GL+KL  LN++ C  I+D  +  LSG++        +L+ L +
Sbjct: 151 LGGCCNITNTGLLLCAWGLLKLRYLNLRSCRHISDVGIGHLSGISKNAAEGCLHLEHLCL 210

Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
             C K+TD  + ++ KGLQ+L  LNL   C ++   +  L+ + SL  LNL  C  +SD 
Sbjct: 211 QDCQKLTDLALKHVSKGLQRLKSLNLSFCCGISDGGMMYLAKMSSLKELNLRSCDNISDI 270

Query: 244 GCEKFSK-IGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL------- 293
           G    +    ++  L++ F +++ D  L H+  GL +L SL+L SC I DEGL       
Sbjct: 271 GIAHLADGSATISHLDVSFCDKVGDSALGHIAHGLYHLHSLSLGSCNISDEGLNRMVRSM 330

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKS 352
             LT L   +C +++D  +G         LT L +I+L   T I+   L ++  L  L  
Sbjct: 331 HELTTLDIGQCYKITDKGLGLIA----DNLTQLTNIDLYGCTKITTAGLERIMQLPRLSV 386

Query: 353 LNL 355
           LNL
Sbjct: 387 LNL 389



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 7/174 (4%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           +TD  L H+ K    L+SL+ +FC  ISDGG+ +L  +S+L  L+ R  + I+  G+   
Sbjct: 216 LTDLALKHVSKGLQRLKSLNLSFCCGISDGGMMYLAKMSSLKELNLRSCDNISDIGIAHL 275

Query: 128 A-GLINLVKLDLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           A G   +  LD+  C ++    +     GL  L SL++  CN   +   + +  +  L +
Sbjct: 276 ADGSATISHLDVSFCDKVGDSALGHIAHGLYHLHSLSLGSCNISDEGLNRMVRSMHELTT 335

Query: 185 LQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNL 235
           L I  C K+TD G+  +   L +LT ++L GC  +T A L+ +  L  L  LNL
Sbjct: 336 LDIGQCYKITDKGLGLIADNLTQLTNIDLYGCTKITTAGLERIMQLPRLSVLNL 389


>gi|119485475|ref|ZP_01619803.1| Rab family protein [Lyngbya sp. PCC 8106]
 gi|119457231|gb|EAW38357.1| Rab family protein [Lyngbya sp. PCC 8106]
          Length = 457

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 118/353 (33%), Positives = 182/353 (51%), Gaps = 47/353 (13%)

Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
           A   L+ +++LDL R ++I   L  L  L  L  LN+   N ITD  + PLS LTNL  L
Sbjct: 94  AQKSLLQVIELDLSR-SKI-SDLSPLITLPHLTRLNLSE-NQITD--LTPLSNLTNLTRL 148

Query: 186 QISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
            +S + + D S I+ L  LQ L L   E        L  LS L  L  L+L+  ++SD  
Sbjct: 149 NLSSNLIQDLSPISELPNLQILLLYKNE-----IEVLSPLSNLSGLTELSLDSNKISD-- 201

Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV----NLTGLC 300
               S++ +L  L+L  N+I D  ++    L NL  L+L+   + D  L+    NLT L 
Sbjct: 202 ISSLSELNNLTNLSLSENQIQDLSIIA--NLENLTQLSLNGNKVNDISLISELQNLTKL- 258

Query: 301 NLKCLELSDTQVGSS---------------GLRHLSGLTNLESINLSFTGISDGSLRKLA 345
           NLK  ++ D    S+                +  LS LT LE+++LS   I++  ++ L+
Sbjct: 259 NLKTNQIEDLSSLSNLSNLKELNLDSNKLIDVSALSSLTQLETLSLSENNITN--IQPLS 316

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTH-LDLFGARITDSGAAYLRNFKNLRSLEIC 404
            L +L +L L + QI+D  + AL+SLT LT  L+L   +I+D     L N KNL  + + 
Sbjct: 317 NLENLITLQLRSNQISD--IKALSSLTNLTEDLNLIDNQISD--IKPLSNLKNLSRVGLS 372

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
              ++D  +K + DLS L +L L +N  +T+  ++ +S LT L  LN+ N++I
Sbjct: 373 KNQISD--LKPLSDLSKLVILYLDEN-KITE--VQPLSNLTNLTELNLWNNQI 420



 Score = 45.8 bits (107), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 90/193 (46%), Gaps = 23/193 (11%)

Query: 86  LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
           LD N  I +S      L  L+ L +LS   NN    Q     + L NL+ L L R  +I 
Sbjct: 282 LDSNKLIDVS-----ALSSLTQLETLSLSENNITNIQ---PLSNLENLITLQL-RSNQIS 332

Query: 146 GGLVNLKGLMKLESLNIKWCNCITD--SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
               ++K L  L +L  +  N I +  SD+KPLS L NL  + +S ++++D  +  L  L
Sbjct: 333 ----DIKALSSLTNL-TEDLNLIDNQISDIKPLSNLKNLSRVGLSKNQISD--LKPLSDL 385

Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
            KL +L L+   +T      LS L +L  LNL   Q+     E  S + +L  L L  N 
Sbjct: 386 SKLVILYLDENKITEV--QPLSNLTNLTELNLWNNQIK--TIESLSTLDNLTYLGLQENP 441

Query: 264 I-TDECLVHLKGL 275
           I   EC V  K +
Sbjct: 442 IEKKECPVQPKSI 454


>gi|21674346|ref|NP_662411.1| Rab family protein [Chlorobium tepidum TLS]
 gi|21647522|gb|AAM72753.1| Rab family protein [Chlorobium tepidum TLS]
          Length = 1102

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/263 (33%), Positives = 138/263 (52%), Gaps = 18/263 (6%)

Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
           + ++  L  L SL++ W      SD+ PL  L +L  LQ+S +++TD  IA L  L+ LT
Sbjct: 97  ITDIAPLASLNSLSMLWLFGNKISDIAPLESLKSLTELQLSSNQITD--IAPLASLKSLT 154

Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
            L+L G  ++      L +L SL  L+L+  Q++D      + + SL  L+L  N+I+D 
Sbjct: 155 ELSLSGNNISDIA--PLESLKSLTELSLSSNQITD--IAPLASLKSLTELSLSSNQISD- 209

Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
            +  L+ L +L  L L    I D  +  L  L +L  L+LS  Q+  + +  L+ L +L 
Sbjct: 210 -IAPLESLKSLTELQLSRNQISD--IAPLESLKSLTELQLSSNQI--TDIAPLASLKSLT 264

Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
            + LS   ISD  +  L  L+SL  L L+  QITD  +A L SL  LT L+L   +ITD 
Sbjct: 265 ELQLSRNQISD--IAPLESLNSLSKLWLNGNQITD--IAPLASLNSLTELELSSNQITD- 319

Query: 388 GAAYLRNFKNLRSLEICGGGLTD 410
             A L + K+L +L +    ++D
Sbjct: 320 -IAPLASLKSLSTLWLSSNQISD 341



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 93/287 (32%), Positives = 142/287 (49%), Gaps = 37/287 (12%)

Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVT-AACLDSLSALGSLFYL--------------N 234
           +++TD  I+ L  L  L++L L+   +T  A L SL++L  L+                +
Sbjct: 73  NQITD--ISPLASLNSLSMLWLDRNQITDIAPLASLNSLSMLWLFGNKISDIAPLESLKS 130

Query: 235 LNRCQLSDDGCEKFSKIGSLK---VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
           L   QLS +     + + SLK    L+L  N I+D  +  L+ L +L  L+L S  I D 
Sbjct: 131 LTELQLSSNQITDIAPLASLKSLTELSLSGNNISD--IAPLESLKSLTELSLSSNQITD- 187

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
            +  L  L +L  L LS  Q+  S +  L  L +L  + LS   ISD  +  L  L SL 
Sbjct: 188 -IAPLASLKSLTELSLSSNQI--SDIAPLESLKSLTELQLSRNQISD--IAPLESLKSLT 242

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
            L L + QITD  +A L SL  LT L L   +I+D   A L +  +L  L + G  +TD 
Sbjct: 243 ELQLSSNQITD--IAPLASLKSLTELQLSRNQISD--IAPLESLNSLSKLWLNGNQITD- 297

Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
            +  +  L+SLT L LS N  +TD  +  ++ L  L +L +S+++I+
Sbjct: 298 -IAPLASLNSLTELELSSN-QITD--IAPLASLKSLSTLWLSSNQIS 340


>gi|195430566|ref|XP_002063325.1| GK21848 [Drosophila willistoni]
 gi|194159410|gb|EDW74311.1| GK21848 [Drosophila willistoni]
          Length = 543

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 120/374 (32%), Positives = 189/374 (50%), Gaps = 68/374 (18%)

Query: 7   SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
           S  +FN LV  R + +V + + R  +L+DL LG                  +L S++LSG
Sbjct: 207 SPSLFNCLV-RRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 248

Query: 67  S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
             +V D  L H    D  NL++LD + C QI+D  L    +HLR   NL +L       I
Sbjct: 249 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLETLELGGCCNI 305

Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
           T  G+   A GL  L  L+L  C  I   G+ +L G         ++LE L ++ C  ++
Sbjct: 306 TNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLS 365

Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           D  +  ++ GLT+LKS+ +S C  VTDSG+ +L  + KL  LNL  C       D++S +
Sbjct: 366 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 418

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
           G  +        L++ G    S I SL V    F ++I+D+ L H+ +GL  L SL+L+ 
Sbjct: 419 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 463

Query: 286 CGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSL 341
           C I D+G++ +   L  L+ L +   +++   GL+ L+  LTNL++I+L   T ++   +
Sbjct: 464 CQITDQGMLKIAKSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLTSKGI 523

Query: 342 RKLAGLSSLKSLNL 355
             +  L  L+ LNL
Sbjct: 524 DIIMKLPKLQKLNL 537



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 114/352 (32%), Positives = 174/352 (49%), Gaps = 58/352 (16%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
           RG+  +  LS RR+      G+ A      +G  N+  ++L      H   V+L  L   
Sbjct: 217 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLG-----HAFSVDLPNL--- 268

Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           ++L++  C  ITD+ +  ++  L NL++L++  C  +T++G+  +  GL+KL  LNL  C
Sbjct: 269 KTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSC 328

Query: 215 PVTA-------ACLDSLSALGSL--FYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
              +       A     +A G+L   YL L  CQ LSD+     ++ + SLK +NL F  
Sbjct: 329 WHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 388

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
            +TD  L HL  +  LE LNL SC  I D G+  LT               G SG     
Sbjct: 389 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTE--------------GGSG----- 429

Query: 322 GLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLD 378
               + S+++SF   ISD +L  +A GL  L+SL+L+  QITD G+  +  SL  L +L+
Sbjct: 430 ----INSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMLKIAKSLQELENLN 485

Query: 379 LFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
           +   +RITD G   L  +  NL+++++ G   LT  G+  I  L  L  LNL
Sbjct: 486 IGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLTSKGIDIIMKLPKLQKLNL 537



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 98/288 (34%), Positives = 153/288 (53%), Gaps = 28/288 (9%)

Query: 202 GLQKLTLLNLEGCPVTAACLDSLSA----LGSLFYLNLNRC-QLSDDGCEKFSK-IGSLK 255
           G+  LT LNL GC    A ++   A    L +L  L+L+ C Q++D    + ++ + +L+
Sbjct: 237 GVPALTSLNLSGC-FNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLE 295

Query: 256 VLNLG--FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLC--------NLKC 304
            L LG   N      L+   GL  L+ LNL SC  I D+G+ +L G           L+ 
Sbjct: 296 TLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEY 355

Query: 305 LELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQI 360
           L L D Q +    L H++ GLT+L+SINLSF   ++D  L+ LA +  L+ LNL +   I
Sbjct: 356 LGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNI 415

Query: 361 TDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI- 416
           +D G+A LT   +G+  LD+ F  +I+D    ++ +    LRSL +    +TD G+  I 
Sbjct: 416 SDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMLKIA 475

Query: 417 KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGL 462
           K L  L  LN+ Q   +TDK L+ L   LT L ++++   +++TS G+
Sbjct: 476 KSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLTSKGI 523



 Score = 45.1 bits (105), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 33/219 (15%)

Query: 274 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 324
           G+  L SLNL  C       +G    V+L  L  L    C +++DT +G    +HL  L 
Sbjct: 237 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 295

Query: 325 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLT----- 375
            LE     N++ TG+    L    GL  LK LNL +   I+D G+  L   +  T     
Sbjct: 296 TLELGGCCNITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNL 351

Query: 376 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 428
            L+  G     R++D    ++ +   +L+S  L  C   +TD+G+KH+  +  L  LNL 
Sbjct: 352 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 410

Query: 429 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL 465
              N++D  +  L  G +G+ SL+VS   +I+   L H+
Sbjct: 411 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHI 449


>gi|395845618|ref|XP_003795524.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 3 [Otolemur
           garnettii]
          Length = 387

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 169/317 (53%), Gaps = 48/317 (15%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 452 VSN-SRITSAGLRHLNH 467
           +   +RIT  GL  +  
Sbjct: 363 LYGCTRITKRGLERITQ 379



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 166/327 (50%), Gaps = 36/327 (11%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
           RG+  +  LS RR+ +   QGM       N+  L+L  C  +     G   ++ +  L +
Sbjct: 68  RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           LN+  C  ITDS +  ++    LK L++     CS +T++G+  +  GLQ+L  LNL  C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179

Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
              +       A +   +A G   L  L L  CQ L+D   +  S+ +  L++LNL F  
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 239

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
            I+D  L+HL  + +L SLNL SC  I D G+++L  G   L  L++S   +VG   L +
Sbjct: 240 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 299

Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
           ++ GL  L+S++L    ISD  + R +  +  L++LN+    +ITD GL  +   L+ LT
Sbjct: 300 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 359

Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSL 401
            +DL+G  RIT  G   +     L+ L
Sbjct: 360 GIDLYGCTRITKRGLERITQLPCLKRL 386



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 162/305 (53%), Gaps = 32/305 (10%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
           ++  +N++SL+ + C  ++D GL H  ++ + +L +L+      IT   +   A  +  L
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
             L+L  C+ I   G L+   GL +L+SLN++ C  ++D  +  L+G+T         L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205

Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
            L +  C K+TD  + ++ +GL  L LLNL  C  ++ A L  LS +GSL  LNL  C  
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265

Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
           +SD G    + +GSL++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+G+  
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324

Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
               + GL  L   +C+ ++D  +      HLS LT ++      T I+   L ++  L 
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLP 381

Query: 349 SLKSL 353
            LK L
Sbjct: 382 CLKRL 386



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 91/169 (53%), Gaps = 7/169 (4%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           +TD  L H+ +  + L+ L+ +FC  ISD GL HL  + +L SL+ R  + I+  G+   
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274

Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           A G + L  LD+  C ++    +    +GL  L+SL++  C+   D   + +  +  L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334

Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSL 230
           L I  C ++TD G+  + + L +LT ++L GC  +T   L+ ++ L  L
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCL 383


>gi|345791735|ref|XP_543882.2| PREDICTED: F-box/LRR-repeat protein 14 [Canis lupus familiaris]
          Length = 420

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 169/317 (53%), Gaps = 48/317 (15%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 452 VSN-SRITSAGLRHLNH 467
           +   +RIT  GL  +  
Sbjct: 363 LYGCTRITKRGLERITQ 379



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 99/311 (31%), Positives = 167/311 (53%), Gaps = 32/311 (10%)

Query: 81  SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLD 137
           +N++SL+ + C  ++D GL H  ++ + +L +L+      IT   +   A  +  L  L+
Sbjct: 90  ANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLE 149

Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQI 187
           L  C+ I   G L+   GL +L+SLN++ C  ++D  +  L+G+T         L+ L +
Sbjct: 150 LGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTL 209

Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
             C K+TD  + ++ +GL  L LLNL  C  ++ A L  LS +GSL  LNL  C  +SD 
Sbjct: 210 QDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDT 269

Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL----VN 295
           G    + +GSL++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+G+      
Sbjct: 270 GIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQ 328

Query: 296 LTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
           + GL  L   +C+ ++D  +      HLS LT ++      T I+   L ++  L  LK 
Sbjct: 329 MHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLPCLKV 385

Query: 353 LNLDARQITDT 363
           LNL   Q+TD+
Sbjct: 386 LNLGLWQMTDS 396



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 109/349 (31%), Positives = 176/349 (50%), Gaps = 38/349 (10%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
           RG+  +  LS RR+ +   QGM       N+  L+L  C  +     G   ++ +  L +
Sbjct: 68  RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           LN+  C  ITDS +  ++    LK L++     CS +T++G+  +  GLQ+L  LNL  C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179

Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
              +       A +   +A G   L  L L  CQ L+D   +  S+ +  L++LNL F  
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 239

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
            I+D  L+HL  + +L SLNL SC  I D G+++L  G   L  L++S   +VG   L +
Sbjct: 240 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 299

Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
           ++ GL  L+S++L    ISD  + R +  +  L++LN+    +ITD GL  +   L+ LT
Sbjct: 300 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 359

Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
            +DL+G  RIT  G   +     L+ L +    +TD+  + ++D S   
Sbjct: 360 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS--EKVRDCSDFA 406



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           +TD  L H+ +  + L+ L+ +FC  ISD GL HL  + +L SL+ R  + I+  G+   
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274

Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           A G + L  LD+  C ++    +    +GL  L+SL++  C+   D   + +  +  L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334

Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           L I  C ++TD G+  + + L +LT ++L GC                        +++ 
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371

Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
            G E+ +++  LKVLNLG  ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395


>gi|421610748|ref|ZP_16051914.1| leucine-rich repeat domain protein [Rhodopirellula baltica SH28]
 gi|408498532|gb|EKK03025.1| leucine-rich repeat domain protein [Rhodopirellula baltica SH28]
          Length = 341

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 2/249 (0%)

Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
           D  +K LS  + +  L +  +  +D  +  L  L  L  L + G     A   S+S L +
Sbjct: 83  DGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKAFDDAKAKSISGLPA 142

Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
           L  +      ++DDG    +++  L+ ++L  + +TD+ L  +  L  L  LNL    I 
Sbjct: 143 LVAVTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKIT 202

Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
            E    ++ L  L+ LEL++T  G  G+  ++ +  LE INL  T I + SL+   G +S
Sbjct: 203 GEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTS 261

Query: 350 LKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
           L  LN+D    IT+  +  + SL  L  L L    ++      L+  + L +L +   GL
Sbjct: 262 LTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGL 321

Query: 409 TDAGVKHIK 417
            +   K ++
Sbjct: 322 EEEPAKELE 330



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 25/226 (11%)

Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
           G ++ L  L  L+ L + +     D+  K +SGL  L ++    + VTD G + L  L +
Sbjct: 108 GTVLRLAALPNLKRLRV-YGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNE 166

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK--------------- 250
           L  ++L   PVT   L S+S L  L  LNL   +++ +  E  SK               
Sbjct: 167 LQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKITGEAFEPISKLPLESLELAETDFGP 226

Query: 251 --------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
                   I  L+ +NL   +I +E L   +G T+L  LN+D+C  I +E +  +  L +
Sbjct: 227 EGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPH 286

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           LK L L  T V    L  L  L  LE++ ++  G+ +   ++L  +
Sbjct: 287 LKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKELEAM 332



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 4/184 (2%)

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
           L   + +  L + +    D  ++ L  L NLK L +       +  + +SGL  L ++  
Sbjct: 89  LSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKAFDDAKAKSISGLPALVAVTF 148

Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
             T ++D     LA L+ L+ ++L    +TD  LA++++L  LT L+L G +IT  G A+
Sbjct: 149 QDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKIT--GEAF 206

Query: 392 LRNFK-NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
               K  L SLE+        G+  I ++  L  +NL     + +++L+   G T L  L
Sbjct: 207 EPISKLPLESLELAETDFGPEGMPAIANIEGLEKINLWL-TKIDNESLKAFEGKTSLTVL 265

Query: 451 NVSN 454
           NV N
Sbjct: 266 NVDN 269



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 105/240 (43%), Gaps = 3/240 (1%)

Query: 230 LFYLNLNRCQLSD-DGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
           +  ++L     SD DG  K  S   ++  L +     +D  ++ L  L NL+ L +    
Sbjct: 69  VVVVDLREVAESDLDGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKA 128

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
             D    +++GL  L  +   DT V   G   L+ L  L+ ++L  + ++D +L  ++ L
Sbjct: 129 FDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTL 188

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
             L  LNL   +IT      ++ L  L  L+L        G   + N + L  + +    
Sbjct: 189 PKLTKLNLRGTKITGEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTK 247

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNH 467
           + +  +K  +  +SLT+LN+     +T++ + +I  L  L  L++  + ++   L  L  
Sbjct: 248 IDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKP 307



 Score = 42.4 bits (98), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 74/181 (40%), Gaps = 7/181 (3%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  V L  S VTD  L  +     L  L+     +I+    E +  L  L SL     + 
Sbjct: 167 LQDVSLMNSPVTDKTLASISTLPKLTKLNLR-GTKITGEAFEPISKLP-LESLELAETD- 223

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
              +GM A A +  L K++L      +  L   +G   L  LN+  C  IT+  +  +  
Sbjct: 224 FGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVS 283

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           L +LK L +  + V+   +  LK LQ+L  L +    +       L A+    + NL R 
Sbjct: 284 LPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKELEAM----FPNLKRF 339

Query: 239 Q 239
           +
Sbjct: 340 E 340


>gi|22748931|ref|NP_689654.1| F-box/LRR-repeat protein 14 [Homo sapiens]
 gi|386782025|ref|NP_001247451.1| F-box/LRR-repeat protein 14 [Macaca mulatta]
 gi|390467358|ref|XP_003733751.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 2 [Callithrix
           jacchus]
 gi|402884767|ref|XP_003905846.1| PREDICTED: F-box/LRR-repeat protein 14 [Papio anubis]
 gi|441670511|ref|XP_004092204.1| PREDICTED: F-box/LRR-repeat protein 14 [Nomascus leucogenys]
 gi|48428083|sp|Q8N1E6.1|FXL14_HUMAN RecName: Full=F-box/LRR-repeat protein 14; AltName: Full=F-box and
           leucine-rich repeat protein 14
 gi|20381419|gb|AAH28132.1| F-box and leucine-rich repeat protein 14 [Homo sapiens]
 gi|119609334|gb|EAW88928.1| F-box and leucine-rich repeat protein 14, isoform CRA_a [Homo
           sapiens]
 gi|312150528|gb|ADQ31776.1| F-box and leucine-rich repeat protein 14 [synthetic construct]
 gi|355563880|gb|EHH20380.1| F-box and leucine-rich repeat protein 14 [Macaca mulatta]
 gi|384945426|gb|AFI36318.1| F-box/LRR-repeat protein 14 [Macaca mulatta]
 gi|410217776|gb|JAA06107.1| F-box and leucine-rich repeat protein 14 [Pan troglodytes]
          Length = 418

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 169/317 (53%), Gaps = 48/317 (15%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 452 VSN-SRITSAGLRHLNH 467
           +   +RIT  GL  +  
Sbjct: 363 LYGCTRITKRGLERITQ 379



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 175/348 (50%), Gaps = 36/348 (10%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
           RG+  +  LS RR+ +   QGM       N+  L+L  C  +     G   ++ +  L +
Sbjct: 68  RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           LN+  C  ITDS +  ++    LK L++     CS +T++G+  +  GLQ+L  LNL  C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179

Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
              +       A +   +A G   L  L L  CQ L+D   +  S+ +  L++LNL F  
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 239

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRH 319
            I+D  L+HL  + +L SLNL SC  I D G+++L  G   L  L++S   +VG   L +
Sbjct: 240 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 299

Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
           ++ GL  L+S++L    ISD  + R +  +  L++LN+    +ITD GL  +   L+ LT
Sbjct: 300 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 359

Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
            +DL+G  RIT  G   +     L+ L +    +TD+  +   D S L
Sbjct: 360 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKEARGDFSPL 407



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 169/315 (53%), Gaps = 32/315 (10%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
           ++  +N++SL+ + C  ++D GL H  ++ + +L +L+      IT   +   A  +  L
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
             L+L  C+ I   G L+   GL +L+SLN++ C  ++D  +  L+G+T         L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205

Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
            L +  C K+TD  + ++ +GL  L LLNL  C  ++ A L  LS +GSL  LNL  C  
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265

Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
           +SD G    + +GSL++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+G+  
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324

Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
               + GL  L   +C+ ++D  +      HLS LT ++      T I+   L ++  L 
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLP 381

Query: 349 SLKSLNLDARQITDT 363
            LK LNL   Q+TD+
Sbjct: 382 CLKVLNLGLWQMTDS 396



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           +TD  L H+ +  + L+ L+ +FC  ISD GL HL  + +L SL+ R  + I+  G+   
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274

Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           A G + L  LD+  C ++    +    +GL  L+SL++  C+   D   + +  +  L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334

Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           L I  C ++TD G+  + + L +LT ++L GC                        +++ 
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371

Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
            G E+ +++  LKVLNLG  ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395


>gi|32477277|ref|NP_870271.1| G protein-coupled receptor LGR4 [Rhodopirellula baltica SH 1]
 gi|32447828|emb|CAD77346.1| probable G protein-coupled receptor LGR4 [Rhodopirellula baltica SH
           1]
          Length = 341

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 2/249 (0%)

Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
           D  +K LS  + +  L +  +  +D  +  L  L  L  L + G     A   S+S L +
Sbjct: 83  DGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKAFDDAKAKSISGLPA 142

Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
           L  +      ++DDG    +++  L+ ++L  + +TD+ L  +  L  L  LNL    I 
Sbjct: 143 LVAVTFQDTSVTDDGASVLAELNELQDVSLMKSPVTDKTLTSISTLPKLTKLNLRGTKIT 202

Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
            E    ++ L  L+ LEL++T  G  G+  ++ +  LE INL  T I + SL+   G +S
Sbjct: 203 GEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTS 261

Query: 350 LKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
           L  LN+D    IT+  +  + SL  L  L L    ++      L+  + L +L +   GL
Sbjct: 262 LTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGL 321

Query: 409 TDAGVKHIK 417
            +   K ++
Sbjct: 322 EEEPAKELE 330



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 25/226 (11%)

Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
           G ++ L  L  L+ L + +     D+  K +SGL  L ++    + VTD G + L  L +
Sbjct: 108 GTVLRLAALPNLKRLRV-YGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNE 166

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK--------------- 250
           L  ++L   PVT   L S+S L  L  LNL   +++ +  E  SK               
Sbjct: 167 LQDVSLMKSPVTDKTLTSISTLPKLTKLNLRGTKITGEAFEPISKLPLESLELAETDFGP 226

Query: 251 --------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
                   I  L+ +NL   +I +E L   +G T+L  LN+D+C  I +E +  +  L +
Sbjct: 227 EGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPH 286

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           LK L L  T V    L  L  L  LE++ ++  G+ +   ++L  +
Sbjct: 287 LKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKELEAM 332



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 105/240 (43%), Gaps = 3/240 (1%)

Query: 230 LFYLNLNRCQLSD-DGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
           +  ++L     SD DG  K  S   ++  L +     +D  ++ L  L NL+ L +    
Sbjct: 69  VVVVDLREVAESDLDGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKA 128

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
             D    +++GL  L  +   DT V   G   L+ L  L+ ++L  + ++D +L  ++ L
Sbjct: 129 FDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNELQDVSLMKSPVTDKTLTSISTL 188

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
             L  LNL   +IT      ++ L  L  L+L        G   + N + L  + +    
Sbjct: 189 PKLTKLNLRGTKITGEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTK 247

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNH 467
           + +  +K  +  +SLT+LN+     +T++ + +I  L  L  L++  + ++   L  L  
Sbjct: 248 IDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKP 307



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 74/181 (40%), Gaps = 7/181 (3%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  V L  S VTD  L  +     L  L+     +I+    E +  L  L SL     + 
Sbjct: 167 LQDVSLMKSPVTDKTLTSISTLPKLTKLNLR-GTKITGEAFEPISKLP-LESLELAETD- 223

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
              +GM A A +  L K++L      +  L   +G   L  LN+  C  IT+  +  +  
Sbjct: 224 FGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVS 283

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           L +LK L +  + V+   +  LK LQ+L  L +    +       L A+    + NL R 
Sbjct: 284 LPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKELEAM----FPNLKRF 339

Query: 239 Q 239
           +
Sbjct: 340 E 340


>gi|440712554|ref|ZP_20893170.1| hypothetical protein RBSWK_00227 [Rhodopirellula baltica SWK14]
 gi|436442709|gb|ELP35820.1| hypothetical protein RBSWK_00227 [Rhodopirellula baltica SWK14]
          Length = 341

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 2/249 (0%)

Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
           D  +K LS  + +  L +  +  +D  +  L  L  L  L + G     A   S+S L +
Sbjct: 83  DGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKAFDDAKAKSISGLPA 142

Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
           L  +      ++DDG    +++  L+ ++L  + +TD+ L  +  L  L  LNL    I 
Sbjct: 143 LVAVTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKIT 202

Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
            E    ++ L  L+ LEL++T  G  G+  ++ +  LE INL  T I + SL+   G +S
Sbjct: 203 GEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTS 261

Query: 350 LKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
           L  LN+D    IT+  +  + SL  L  L L    ++      L+  + L +L +   GL
Sbjct: 262 LTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGL 321

Query: 409 TDAGVKHIK 417
            +   K ++
Sbjct: 322 EEEPAKELE 330



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 25/226 (11%)

Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
           G ++ L  L  L+ L + +     D+  K +SGL  L ++    + VTD G + L  L +
Sbjct: 108 GTVLRLAALPNLKRLRV-YGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNE 166

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK--------------- 250
           L  ++L   PVT   L S+S L  L  LNL   +++ +  E  SK               
Sbjct: 167 LQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKITGEAFEPISKLPLESLELAETDFGP 226

Query: 251 --------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
                   I  L+ +NL   +I +E L   +G T+L  LN+D+C  I +E +  +  L +
Sbjct: 227 EGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPH 286

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           LK L L  T V    L  L  L  LE++ ++  G+ +   ++L  +
Sbjct: 287 LKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKELEAM 332



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 4/184 (2%)

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
           L   + +  L + +    D  ++ L  L NLK L +       +  + +SGL  L ++  
Sbjct: 89  LSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKAFDDAKAKSISGLPALVAVTF 148

Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
             T ++D     LA L+ L+ ++L    +TD  LA++++L  LT L+L G +IT  G A+
Sbjct: 149 QDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKIT--GEAF 206

Query: 392 LRNFK-NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
               K  L SLE+        G+  I ++  L  +NL     + +++L+   G T L  L
Sbjct: 207 EPISKLPLESLELAETDFGPEGMPAIANIEGLEKINLWL-TKIDNESLKAFEGKTSLTVL 265

Query: 451 NVSN 454
           NV N
Sbjct: 266 NVDN 269



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 105/240 (43%), Gaps = 3/240 (1%)

Query: 230 LFYLNLNRCQLSD-DGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
           +  ++L     SD DG  K  S   ++  L +     +D  ++ L  L NL+ L +    
Sbjct: 69  VVVVDLREVAESDLDGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKA 128

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
             D    +++GL  L  +   DT V   G   L+ L  L+ ++L  + ++D +L  ++ L
Sbjct: 129 FDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTL 188

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
             L  LNL   +IT      ++ L  L  L+L        G   + N + L  + +    
Sbjct: 189 PKLTKLNLRGTKITGEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTK 247

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNH 467
           + +  +K  +  +SLT+LN+     +T++ + +I  L  L  L++  + ++   L  L  
Sbjct: 248 IDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKP 307



 Score = 42.4 bits (98), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 74/181 (40%), Gaps = 7/181 (3%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  V L  S VTD  L  +     L  L+     +I+    E +  L  L SL     + 
Sbjct: 167 LQDVSLMNSPVTDKTLASISTLPKLTKLNLR-GTKITGEAFEPISKLP-LESLELAETD- 223

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
              +GM A A +  L K++L      +  L   +G   L  LN+  C  IT+  +  +  
Sbjct: 224 FGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVS 283

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           L +LK L +  + V+   +  LK LQ+L  L +    +       L A+    + NL R 
Sbjct: 284 LPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKELEAM----FPNLKRF 339

Query: 239 Q 239
           +
Sbjct: 340 E 340


>gi|344278047|ref|XP_003410808.1| PREDICTED: F-box/LRR-repeat protein 14 [Loxodonta africana]
          Length = 514

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 169/317 (53%), Gaps = 48/317 (15%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYHLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 452 VSN-SRITSAGLRHLNH 467
           +   +RIT  GL  +  
Sbjct: 363 LYGCTRITKRGLERITQ 379



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 101/319 (31%), Positives = 170/319 (53%), Gaps = 40/319 (12%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
           ++  +N++SL+ + C  ++D GL H  ++ + +L +L+      IT   +   A  +  L
Sbjct: 86  IQGMANIESLNLSGCYHLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
             L+L  C+ I   G L+   GL +L+SLN++ C  ++D  +  L+G+T         L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205

Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
            L +  C K+TD  + ++ +GL  L LLNL  C  ++ A L  LS +GSL  LNL  C  
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265

Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
           +SD G    + +GSL++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+G+  
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324

Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGL----RHLSGLTNLESINLSFTGISDGSLRKL 344
               + GL  L   +C+ ++D      GL     HLS LT ++      T I+   L ++
Sbjct: 325 MVRQMHGLRTLNIGQCVRITD-----KGLELIAEHLSQLTGIDLYGC--TRITKRGLERI 377

Query: 345 AGLSSLKSLNLDARQITDT 363
             L  LK LNL   Q+TD+
Sbjct: 378 TQLPCLKVLNLGLWQMTDS 396



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           +TD  L H+ +  + L+ L+ +FC  ISD GL HL  + +L SL+ R  + I+  G+   
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274

Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           A G + L  LD+  C ++    +    +GL  L+SL++  C+   D   + +  +  L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334

Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           L I  C ++TD G+  + + L +LT ++L GC                        +++ 
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGC-----------------------TRITK 371

Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
            G E+ +++  LKVLNLG  ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395


>gi|334117579|ref|ZP_08491670.1| Adenylate cyclase [Microcoleus vaginatus FGP-2]
 gi|333460688|gb|EGK89296.1| Adenylate cyclase [Microcoleus vaginatus FGP-2]
          Length = 516

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 115/328 (35%), Positives = 163/328 (49%), Gaps = 33/328 (10%)

Query: 97  GGLEHLRGLSNLTSLSFRRNNAITAQG-MKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
           G +  L  L+NLT L    N    A G +K  A L NL +L+L       G +  L  L 
Sbjct: 100 GDITPLASLTNLTVLDLGFN----ALGDIKPLASLTNLTRLNL--FGNQIGDIKPLASLT 153

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
           KL  L +   N I   D+KPL+ LTNL  L +S ++V D  I  L  L  LT L+L+G  
Sbjct: 154 KLTELTLN-NNKI--GDIKPLASLTNLTDLVLSSNQVGD--IKPLASLTNLTRLDLDGNV 208

Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
           +    +  L++L +L  L+L+   + D   +  + + +L  L+L  N+I D  +  L  L
Sbjct: 209 I--GDIKPLASLTNLTRLDLDGNVIGD--IKPLASLTNLSSLDLDDNQIGD--IKPLASL 262

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
           TNL  L+L    IGD  +  L  L NL  L L D Q+G   ++ L+ LTNL  + LS   
Sbjct: 263 TNLMGLDLRRIVIGD--IKPLASLTNLTDLSLDDNQIGD--IKPLASLTNLTRLVLSSNQ 318

Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
           I D  ++ LA L++L SL+L    I D  +  L SLT L+ LDL   +I D     L + 
Sbjct: 319 IRD--IKPLASLTNLSSLDLSGNVIGD--IKPLASLTNLSSLDLNNNKIGD--IKPLASL 372

Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLT 423
             L  L + G  + D     IK L+SLT
Sbjct: 373 TKLTELTLSGNVIGD-----IKPLASLT 395



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 94/279 (33%), Positives = 138/279 (49%), Gaps = 38/279 (13%)

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
           D+ PL+ LTNL  L +  + + D  I  L  L  LT LNL G  +    +  L++L  L 
Sbjct: 101 DITPLASLTNLTVLDLGFNALGD--IKPLASLTNLTRLNLFGNQI--GDIKPLASLTKLT 156

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD- 290
            L LN  ++ D   +  + + +L  L L  N++ D  +  L  LTNL  L+LD   IGD 
Sbjct: 157 ELTLNNNKIGD--IKPLASLTNLTDLVLSSNQVGD--IKPLASLTNLTRLDLDGNVIGDI 212

Query: 291 ---EGLVNLT----------------GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
                L NLT                 L NL  L+L D Q+G   ++ L+ LTNL  ++L
Sbjct: 213 KPLASLTNLTRLDLDGNVIGDIKPLASLTNLSSLDLDDNQIGD--IKPLASLTNLMGLDL 270

Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
               I  G ++ LA L++L  L+LD  QI D  +  L SLT LT L L   +I D     
Sbjct: 271 RRIVI--GDIKPLASLTNLTDLSLDDNQIGD--IKPLASLTNLTRLVLSSNQIRD--IKP 324

Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           L +  NL SL++ G  + D  +K +  L++L+ L+L+ N
Sbjct: 325 LASLTNLSSLDLSGNVIGD--IKPLASLTNLSSLDLNNN 361



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 123/276 (44%), Gaps = 37/276 (13%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L S+DL  + + D  +  L   +NL  LD     +I  G ++ L  L+NLT LS   N
Sbjct: 241 TNLSSLDLDDNQIGD--IKPLASLTNLMGLDLR---RIVIGDIKPLASLTNLTDLSLDDN 295

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
                  +K  A L NL +L L    +I   +  L  L  L SL++   N I   D+KPL
Sbjct: 296 QI---GDIKPLASLTNLTRLVLS-SNQIRD-IKPLASLTNLSSLDLS-GNVI--GDIKPL 347

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV-TAACLDSLSALGSLFYLN- 234
           + LTNL SL ++ +K+ D  I  L  L KLT L L G  +     L SL+ L SL     
Sbjct: 348 ASLTNLSSLDLNNNKIGD--IKPLASLTKLTELTLSGNVIGDIKPLASLTNLSSLVLFGN 405

Query: 235 -----------LNRCQLSDDG-----CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
                       N   L  DG      +  + + +L  L L  N I D  +  L  LTNL
Sbjct: 406 VIGDIKPLASLTNLSSLVLDGNVIGDIKALASLTNLAGLFLSSNVIGD--IKPLASLTNL 463

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
            SL+L    IGD  +  L  L NL  L LS   +  
Sbjct: 464 SSLDLSDNHIGD--IKPLASLTNLIELHLSGNPIAP 497


>gi|320165418|gb|EFW42317.1| tyrosine-protein kinase CSK [Capsaspora owczarzaki ATCC 30864]
          Length = 953

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 128/289 (44%), Gaps = 2/289 (0%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N IT       +GLT L  L +  +++T        GL  LT L      +T+   D+ +
Sbjct: 9   NPITSIPTNAFTGLTALTELSLLYNQITGISAGTFTGLTALTALYFASNQITSIPADAFT 68

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLD 284
            L +L +L+L   Q++      F+ + +L  L+L +N+IT          LT L  L+LD
Sbjct: 69  GLTALTHLSLQYNQITSISGTAFTSLTALTYLSLQYNQITSISGTAFTFNLTALTYLSLD 128

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
           S  I    +   TGL  L  L L   Q+ S  +   +GLT L S+ L    I+       
Sbjct: 129 SNQITSIPVGAFTGLTALTYLSLYTNQITSISVNAFTGLTALASLVLQNNQITSIPAAAC 188

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
            GL +L  L+L   QIT     A T LT LT+L +   +IT   A    +   L  L + 
Sbjct: 189 TGLPALTELSLGINQITSIPADAFTGLTALTYLSVENNQITSIPAGAFTDLAALTDLHLD 248

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
           G  +T         L++LT L L QN  +T     L  GL   ++L++S
Sbjct: 249 GNQITSIPDFSFTGLTALTTLAL-QNNPITTLPPGLFKGLPNALALSLS 296



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 104/229 (45%), Gaps = 4/229 (1%)

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
           Y+N N   ++      F+ + +L  L+L +N+IT        GLT L +L   S  I   
Sbjct: 5   YINSN--PITSIPTNAFTGLTALTELSLLYNQITGISAGTFTGLTALTALYFASNQITSI 62

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-GLSSL 350
                TGL  L  L L   Q+ S      + LT L  ++L +  I+  S       L++L
Sbjct: 63  PADAFTGLTALTHLSLQYNQITSISGTAFTSLTALTYLSLQYNQITSISGTAFTFNLTAL 122

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
             L+LD+ QIT   + A T LT LT+L L+  +IT            L SL +    +T 
Sbjct: 123 TYLSLDSNQITSIPVGAFTGLTALTYLSLYTNQITSISVNAFTGLTALASLVLQNNQITS 182

Query: 411 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
                   L +LT L+L  N  +T    +  +GLT L  L+V N++ITS
Sbjct: 183 IPAAACTGLPALTELSLGIN-QITSIPADAFTGLTALTYLSVENNQITS 230



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 101/226 (44%), Gaps = 8/226 (3%)

Query: 85  SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
           SL +N    IS      L  L+ L SL + +  +I+          +  + LD  + T I
Sbjct: 77  SLQYNQITSISGTAFTSLTALTYL-SLQYNQITSISGTAFTFNLTALTYLSLDSNQITSI 135

Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
             G     GL  L  L++ + N IT   +   +GLT L SL +  +++T    A   GL 
Sbjct: 136 PVGA--FTGLTALTYLSL-YTNQITSISVNAFTGLTALASLVLQNNQITSIPAAACTGLP 192

Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
            LT L+L    +T+   D+ + L +L YL++   Q++      F+ + +L  L+L  N+I
Sbjct: 193 ALTELSLGINQITSIPADAFTGLTALTYLSVENNQITSIPAGAFTDLAALTDLHLDGNQI 252

Query: 265 TDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELS 308
           T        GLT L +L L +  I     GL    GL N   L LS
Sbjct: 253 TSIPDFSFTGLTALTTLALQNNPITTLPPGL--FKGLPNALALSLS 296



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 109/245 (44%), Gaps = 9/245 (3%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLV- 149
           QI+    +   GL+ LT LS + N  IT+    AF  L  L  L L+  + T I G    
Sbjct: 58  QITSIPADAFTGLTALTHLSLQYNQ-ITSISGTAFTSLTALTYLSLQYNQITSISGTAFT 116

Query: 150 -NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
            NL  L  L SL+    N IT   +   +GLT L  L +  +++T   +    GL  L  
Sbjct: 117 FNLTALTYL-SLD---SNQITSIPVGAFTGLTALTYLSLYTNQITSISVNAFTGLTALAS 172

Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
           L L+   +T+    + + L +L  L+L   Q++    + F+ + +L  L++  N+IT   
Sbjct: 173 LVLQNNQITSIPAAACTGLPALTELSLGINQITSIPADAFTGLTALTYLSVENNQITSIP 232

Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
                 L  L  L+LD   I      + TGL  L  L L +  + +       GL N  +
Sbjct: 233 AGAFTDLAALTDLHLDGNQITSIPDFSFTGLTALTTLALQNNPITTLPPGLFKGLPNALA 292

Query: 329 INLSF 333
           ++LS+
Sbjct: 293 LSLSY 297


>gi|281349609|gb|EFB25193.1| hypothetical protein PANDA_001999 [Ailuropoda melanoleuca]
          Length = 398

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 169/317 (53%), Gaps = 48/317 (15%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 452 VSN-SRITSAGLRHLNH 467
           +   +RIT  GL  +  
Sbjct: 363 LYGCTRITKRGLERITQ 379



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 169/315 (53%), Gaps = 32/315 (10%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
           ++  +N++SL+ + C  ++D GL H  ++ + +L +L+      IT   +   A  +  L
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
             L+L  C+ I   G L+   GL +L+SLN++ C  ++D  +  L+G+T         L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205

Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
            L +  C K+TD  + ++ +GL  L LLNL  C  ++ A L  LS +GSL  LNL  C  
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265

Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
           +SD G    + +GSL++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+G+  
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324

Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
               + GL  L   +C+ ++D  +      HLS LT ++      T I+   L ++  L 
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLP 381

Query: 349 SLKSLNLDARQITDT 363
            LK LNL   Q+TD+
Sbjct: 382 CLKVLNLGLWQMTDS 396



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 107/337 (31%), Positives = 171/337 (50%), Gaps = 36/337 (10%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
           RG+  +  LS RR+ +   QGM       N+  L+L  C  +     G   ++ +  L +
Sbjct: 68  RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           LN+  C  ITDS +  ++    LK L++     CS +T++G+  +  GLQ+L  LNL  C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179

Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
              +       A +   +A G   L  L L  CQ L+D   +  S+ +  L++LNL F  
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 239

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
            I+D  L+HL  + +L SLNL SC  I D G+++L  G   L  L++S   +VG   L +
Sbjct: 240 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 299

Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
           ++ GL  L+S++L    ISD  + R +  +  L++LN+    +ITD GL  +   L+ LT
Sbjct: 300 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 359

Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
            +DL+G  RIT  G   +     L+ L +    +TD+
Sbjct: 360 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           +TD  L H+ +  + L+ L+ +FC  ISD GL HL  + +L SL+ R  + I+  G+   
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274

Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           A G + L  LD+  C ++    +    +GL  L+SL++  C+   D   + +  +  L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334

Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           L I  C ++TD G+  + + L +LT ++L GC                        +++ 
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371

Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
            G E+ +++  LKVLNLG  ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395


>gi|332249163|ref|XP_003273734.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 2 [Nomascus
           leucogenys]
 gi|119609335|gb|EAW88929.1| F-box and leucine-rich repeat protein 14, isoform CRA_b [Homo
           sapiens]
          Length = 401

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 169/317 (53%), Gaps = 48/317 (15%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 452 VSN-SRITSAGLRHLNH 467
           +   +RIT  GL  +  
Sbjct: 363 LYGCTRITKRGLERITQ 379



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 169/315 (53%), Gaps = 32/315 (10%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
           ++  +N++SL+ + C  ++D GL H  ++ + +L +L+      IT   +   A  +  L
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
             L+L  C+ I   G L+   GL +L+SLN++ C  ++D  +  L+G+T         L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205

Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
            L +  C K+TD  + ++ +GL  L LLNL  C  ++ A L  LS +GSL  LNL  C  
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265

Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
           +SD G    + +GSL++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+G+  
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324

Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
               + GL  L   +C+ ++D  +      HLS LT ++      T I+   L ++  L 
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLP 381

Query: 349 SLKSLNLDARQITDT 363
            LK LNL   Q+TD+
Sbjct: 382 CLKVLNLGLWQMTDS 396



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 107/337 (31%), Positives = 171/337 (50%), Gaps = 36/337 (10%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
           RG+  +  LS RR+ +   QGM       N+  L+L  C  +     G   ++ +  L +
Sbjct: 68  RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           LN+  C  ITDS +  ++    LK L++     CS +T++G+  +  GLQ+L  LNL  C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179

Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
              +       A +   +A G   L  L L  CQ L+D   +  S+ +  L++LNL F  
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 239

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
            I+D  L+HL  + +L SLNL SC  I D G+++L  G   L  L++S   +VG   L +
Sbjct: 240 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 299

Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
           ++ GL  L+S++L    ISD  + R +  +  L++LN+    +ITD GL  +   L+ LT
Sbjct: 300 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 359

Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
            +DL+G  RIT  G   +     L+ L +    +TD+
Sbjct: 360 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           +TD  L H+ +  + L+ L+ +FC  ISD GL HL  + +L SL+ R  + I+  G+   
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274

Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           A G + L  LD+  C ++    +    +GL  L+SL++  C+   D   + +  +  L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334

Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           L I  C ++TD G+  + + L +LT ++L GC                        +++ 
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371

Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
            G E+ +++  LKVLNLG  ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395


>gi|428317856|ref|YP_007115738.1| Tetratricopeptide TPR_1 repeat-containing protein [Oscillatoria
           nigro-viridis PCC 7112]
 gi|428241536|gb|AFZ07322.1| Tetratricopeptide TPR_1 repeat-containing protein [Oscillatoria
           nigro-viridis PCC 7112]
          Length = 1221

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 104/309 (33%), Positives = 154/309 (49%), Gaps = 49/309 (15%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+ ++L  ++LS + +TD  +  L   +NL+ L      QISD  ++ L GL+NLT L  
Sbjct: 105 SKFTNLRKLNLSINQITD--VQPLSGLTNLRYLTLT-SNQISD--VKPLSGLTNLTLLYL 159

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
             N  +    +K  +   NL +L+L                           N IT  D+
Sbjct: 160 ADNQIV---DIKPLSKFTNLRRLNLS-------------------------VNQIT--DV 189

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           +PLSGLTNL+SL ++ ++++D  +  L GL  LT L LE   +    +  L+ L +L  L
Sbjct: 190 QPLSGLTNLRSLVLNFNQISD--VKPLSGLTNLTELFLEANQIV--DVKPLAGLTNLTGL 245

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +L   Q+ D      S +  L  L L  N+I D  +  L GLTNL  L L S  I D  +
Sbjct: 246 SLASNQIVD--VTPLSTMTELNFLYLSGNKIAD--VKPLSGLTNLIVLFLASNQIAD--V 299

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
             L+GL NL  L+LS  Q+  +    L+GLTNL +++LS   I+D +   LAGL  L +L
Sbjct: 300 KPLSGLTNLPTLDLSRNQIADAT--PLAGLTNLTNLDLSRNQIADAT--PLAGLVYLTTL 355

Query: 354 NLDARQITD 362
           +L   QI D
Sbjct: 356 DLSRNQIPD 364



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 100/305 (32%), Positives = 147/305 (48%), Gaps = 32/305 (10%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH--GGLVNL--------- 151
           + L+NLT LS  RN  +  + +  F  L  L  L + + T +    GL NL         
Sbjct: 83  KTLTNLTELSLIRNQIVDIKPLSKFTNLRKL-NLSINQITDVQPLSGLTNLRYLTLTSNQ 141

Query: 152 ----KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
               K L  L +L + +       D+KPLS  TNL+ L +S +++TD  +  L GL  L 
Sbjct: 142 ISDVKPLSGLTNLTLLYLADNQIVDIKPLSKFTNLRRLNLSVNQITD--VQPLSGLTNLR 199

Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
            L L    ++   +  LS L +L  L L   Q+ D   +  + + +L  L+L  N+I D 
Sbjct: 200 SLVLNFNQIS--DVKPLSGLTNLTELFLEANQIVD--VKPLAGLTNLTGLSLASNQIVD- 254

Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
            +  L  +T L  L L    I D  +  L+GL NL  L L+  Q+    ++ LSGLTNL 
Sbjct: 255 -VTPLSTMTELNFLYLSGNKIAD--VKPLSGLTNLIVLFLASNQIAD--VKPLSGLTNLP 309

Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
           +++LS   I+D +   LAGL++L +L+L   QI D     L  L  LT LDL   +I D 
Sbjct: 310 TLDLSRNQIADAT--PLAGLTNLTNLDLSRNQIADA--TPLAGLVYLTTLDLSRNQIPDG 365

Query: 388 GAAYL 392
            A  L
Sbjct: 366 EAERL 370



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 113/237 (47%), Gaps = 44/237 (18%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+ ++L  ++LS + +TD  +  L   +NL+SL  NF  QISD  ++ L GL+NLT L  
Sbjct: 171 SKFTNLRRLNLSVNQITD--VQPLSGLTNLRSLVLNFN-QISD--VKPLSGLTNLTELFL 225

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC--NCITD- 170
             N  +    +K  AGL NL  L L         +V++  L  +  LN  +   N I D 
Sbjct: 226 EANQIV---DVKPLAGLTNLTGLSL-----ASNQIVDVTPLSTMTELNFLYLSGNKIADV 277

Query: 171 -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
                              +D+KPLSGLTNL +L +S +++ D+    L GL  LT L+L
Sbjct: 278 KPLSGLTNLIVLFLASNQIADVKPLSGLTNLPTLDLSRNQIADA--TPLAGLTNLTNLDL 335

Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
               +  A    L+ L  L  L+L+R Q+ D   E+   I   K L    N+ TDE 
Sbjct: 336 SRNQIADAT--PLAGLVYLTTLDLSRNQIPDGEAERL--IQKNKQL---LNQKTDEA 385


>gi|410046126|ref|XP_003952131.1| PREDICTED: LOW QUALITY PROTEIN: F-box/LRR-repeat protein 14 [Pan
           troglodytes]
          Length = 568

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 169/317 (53%), Gaps = 48/317 (15%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 236 IQGMANIESLNLSGCYNLTDNGLGHA----------------------FVQEIGSLRALN 273

Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 274 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 333

Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 334 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 393

Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 394 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 452

Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 453 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 512

Query: 452 VSN-SRITSAGLRHLNH 467
           +   +RIT  GL  +  
Sbjct: 513 LYGCTRITKRGLERITQ 529



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 175/348 (50%), Gaps = 36/348 (10%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
           RG+  +  LS RR+ +   QGM       N+  L+L  C  +     G   ++ +  L +
Sbjct: 218 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 271

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           LN+  C  ITDS +  ++    LK L++     CS +T++G+  +  GLQ+L  LNL  C
Sbjct: 272 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 329

Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
              +       A +   +A G   L  L L  CQ L+D   +  S+ +  L++LNL F  
Sbjct: 330 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 389

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRH 319
            I+D  L+HL  + +L SLNL SC  I D G+++L  G   L  L++S   +VG   L +
Sbjct: 390 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 449

Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
           ++ GL  L+S++L    ISD  + R +  +  L++LN+    +ITD GL  +   L+ LT
Sbjct: 450 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 509

Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
            +DL+G  RIT  G   +     L+ L +    +TD+  +   D S L
Sbjct: 510 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKEARGDFSPL 557



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 101/319 (31%), Positives = 170/319 (53%), Gaps = 40/319 (12%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
           ++  +N++SL+ + C  ++D GL H  ++ + +L +L+      IT   +   A  +  L
Sbjct: 236 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 295

Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
             L+L  C+ I   G L+   GL +L+SLN++ C  ++D  +  L+G+T         L+
Sbjct: 296 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 355

Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
            L +  C K+TD  + ++ +GL  L LLNL  C  ++ A L  LS +GSL  LNL  C  
Sbjct: 356 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 415

Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
           +SD G    + +GSL++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+G+  
Sbjct: 416 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 474

Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGL----RHLSGLTNLESINLSFTGISDGSLRKL 344
               + GL  L   +C+ ++D      GL     HLS LT ++      T I+   L ++
Sbjct: 475 MVRQMHGLRTLNIGQCVRITD-----KGLELIAEHLSQLTGIDLYGC--TRITKRGLERI 527

Query: 345 AGLSSLKSLNLDARQITDT 363
             L  LK LNL   Q+TD+
Sbjct: 528 TQLPCLKVLNLGLWQMTDS 546



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           +TD  L H+ +  + L+ L+ +FC  ISD GL HL  + +L SL+ R  + I+  G+   
Sbjct: 365 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 424

Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           A G + L  LD+  C ++    +    +GL  L+SL++  C+   D   + +  +  L++
Sbjct: 425 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 484

Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           L I  C ++TD G+  + + L +LT ++L GC                        +++ 
Sbjct: 485 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGC-----------------------TRITK 521

Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
            G E+ +++  LKVLNLG  ++TD
Sbjct: 522 RGLERITQLPCLKVLNLGLWQMTD 545


>gi|300693896|ref|YP_003749869.1| type III effector protein [Ralstonia solanacearum PSI07]
 gi|299075933|emb|CBJ35242.1| leucine-rich-repeat type III effector protein (GALA2) [Ralstonia
           solanacearum PSI07]
          Length = 1002

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 112/377 (29%), Positives = 173/377 (45%), Gaps = 7/377 (1%)

Query: 56  GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
           G  L S+DLS + + D G   L   ++L SL+ +   +ISD G       ++LTSL+ R 
Sbjct: 599 GRKLESLDLSDTPIGDRGAQLLASSTSLTSLNLSGN-EISDAGAAAFADNTSLTSLNLRG 657

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDM 173
           N+ I+  G +A      L  LD+      + G+  L     L SLN+   W   I D  +
Sbjct: 658 NH-ISDAGAEALGRNTVLTSLDVSANPIGNTGVQALASSRSLTSLNLCSTW---IEDEGV 713

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           + L+  T L+SL IS ++      A L   + L  L    C +T      L+++ SL  L
Sbjct: 714 EALASNTVLRSLDISHNRFGAQFAAELAQNRTLASLKANHCSLTNNVAQQLASIRSLTAL 773

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
            L+   + D G +   +  SL+ L+L  N I    L  L     L SL++   G GD G 
Sbjct: 774 ELSSNLIDDAGVQAIVRNASLRSLDLSQNPIGLGGLHALALSRTLTSLDVSCIGCGDRGG 833

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
           + L+   +L  L+L    + S G++ L+   +L S++LS   I   + R LA    L SL
Sbjct: 834 LVLSKSRSLTLLKLGSNGIASEGVQILAANRSLISLDLSGNTIDVVAARALAKNPRLASL 893

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
           N  +  + D  ++AL     LT LD+   R+   GA  L   + L SL I    +   G 
Sbjct: 894 NASSCGLDDAAVSALAESRSLTSLDVSKNRLFSPGARALAGNRVLTSLNISHNRIGFHGA 953

Query: 414 KHIKDLSSLTLLNLSQN 430
             + + +SLT L+   N
Sbjct: 954 AALAESTSLTFLDARAN 970



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 107/380 (28%), Positives = 169/380 (44%), Gaps = 14/380 (3%)

Query: 95  SDGGLEHLRGLS----NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL-- 148
           S  G    R LS    NL   +  R   +T     AF+ L N   L+       HG L  
Sbjct: 510 SHAGPRTRRALSTVSRNLRDAAVARTKHLTVWDKAAFSRLGNYSALE---SLSFHGNLTI 566

Query: 149 VNLKGLMK-LESLNIKWCN--CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
            +LK L   +  L++  C    ++ + +  L+G   L+SL +S + + D G   L     
Sbjct: 567 ADLKALPPSVRHLDLSGCTGTAVSGAGLAYLAG-RKLESLDLSDTPIGDRGAQLLASSTS 625

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
           LT LNL G  ++ A   + +   SL  LNL    +SD G E   +   L  L++  N I 
Sbjct: 626 LTSLNLSGNEISDAGAAAFADNTSLTSLNLRGNHISDAGAEALGRNTVLTSLDVSANPIG 685

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
           +  +  L    +L SLNL S  I DEG+  L     L+ L++S  + G+     L+    
Sbjct: 686 NTGVQALASSRSLTSLNLCSTWIEDEGVEALASNTVLRSLDISHNRFGAQFAAELAQNRT 745

Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           L S+  +   +++   ++LA + SL +L L +  I D G+ A+     L  LDL    I 
Sbjct: 746 LASLKANHCSLTNNVAQQLASIRSLTALELSSNLIDDAGVQAIVRNASLRSLDLSQNPIG 805

Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
             G   L   + L SL++   G  D G   +    SLTLL L  N  +  + +++++   
Sbjct: 806 LGGLHALALSRTLTSLDVSCIGCGDRGGLVLSKSRSLTLLKLGSN-GIASEGVQILAANR 864

Query: 446 GLVSLNVSNSRITSAGLRHL 465
            L+SL++S + I     R L
Sbjct: 865 SLISLDLSGNTIDVVAARAL 884



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 114/404 (28%), Positives = 182/404 (45%), Gaps = 32/404 (7%)

Query: 57  SSLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
            S+  +DLSG   + V+ +GL +L     L+SLD +    I D G + L   ++LTSL+ 
Sbjct: 574 PSVRHLDLSGCTGTAVSGAGLAYLAG-RKLESLDLSDT-PIGDRGAQLLASSTSLTSLNL 631

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
              N I+  G  AFA   +L  L             NL+G            N I+D+  
Sbjct: 632 S-GNEISDAGAAAFADNTSLTSL-------------NLRG------------NHISDAGA 665

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           + L   T L SL +S + + ++G+  L   + LT LNL    +    +++L++   L  L
Sbjct: 666 EALGRNTVLTSLDVSANPIGNTGVQALASSRSLTSLNLCSTWIEDEGVEALASNTVLRSL 725

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +++  +       + ++  +L  L      +T+     L  + +L +L L S  I D G+
Sbjct: 726 DISHNRFGAQFAAELAQNRTLASLKANHCSLTNNVAQQLASIRSLTALELSSNLIDDAGV 785

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
             +    +L+ L+LS   +G  GL  L+    L S+++S  G  D     L+   SL  L
Sbjct: 786 QAIVRNASLRSLDLSQNPIGLGGLHALALSRTLTSLDVSCIGCGDRGGLVLSKSRSLTLL 845

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
            L +  I   G+  L +   L  LDL G  I    A  L     L SL     GL DA V
Sbjct: 846 KLGSNGIASEGVQILAANRSLISLDLSGNTIDVVAARALAKNPRLASLNASSCGLDDAAV 905

Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
             + +  SLT L++S+N  L       ++G   L SLN+S++RI
Sbjct: 906 SALAESRSLTSLDVSKN-RLFSPGARALAGNRVLTSLNISHNRI 948



 Score = 45.8 bits (107), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 125/285 (43%), Gaps = 36/285 (12%)

Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV-- 256
           +LKG    TL +L+  P T            L +L+L+ C  S    +  + + SL +  
Sbjct: 112 HLKG--NFTLADLKALPAT------------LLHLDLSECTGSARSSKAIAYLASLPLES 157

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
           LN+   +I D     L    +L++LN+   GIG  G  NL     L  L+L+  ++G  G
Sbjct: 158 LNVKGAQIGDHGARLLAANPSLKTLNMAIGGIGAAGAANLAESRTLMSLDLTQNKIGDKG 217

Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL---------DARQ-------- 359
           ++ L+   +L ++ +S   ++D  L  LA   +L SL+L         +A Q        
Sbjct: 218 VQALAASRSLTNLTVSNCLVTDIGLEALARSRTLTSLDLGNLVSATYDEAEQADFDRTAN 277

Query: 360 -ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
            IT  G  AL     LT L + G    D+G   L   + L  L +    +     + +  
Sbjct: 278 DITVKGTRALVQSPSLTSLSVQGNLCGDAGVLELAKSRTLTHLNVAFTNMGPVSARALAR 337

Query: 419 LSSLTLLNLSQNCNL-TDKTLELISGLTGLVSLNVSNSRITSAGL 462
              LT LN+  N ++ T+  LEL    + L+SL+  ++ I + G+
Sbjct: 338 NPVLTSLNVRWNYDIGTEGALELTKSES-LISLDARDASIGAEGV 381



 Score = 44.7 bits (104), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 95/221 (42%), Gaps = 24/221 (10%)

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT-----DECLVHLKGLTNLESLNLDS 285
           +Y NL    L  +      K     +L+L  +E T      + + +L  L  LESLN+  
Sbjct: 104 YYPNLESVHLKGNFTLADLKALPATLLHLDLSECTGSARSSKAIAYLASLP-LESLNVKG 162

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
             IGD G   L    +LK L ++   +G++G  +L+    L S++L+   I D  ++ LA
Sbjct: 163 AQIGDHGARLLAANPSLKTLNMAIGGIGAAGAANLAESRTLMSLDLTQNKIGDKGVQALA 222

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL------------------FGARITDS 387
              SL +L +    +TD GL AL     LT LDL                      IT  
Sbjct: 223 ASRSLTNLTVSNCLVTDIGLEALARSRTLTSLDLGNLVSATYDEAEQADFDRTANDITVK 282

Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
           G   L    +L SL + G    DAGV  +    +LT LN++
Sbjct: 283 GTRALVQSPSLTSLSVQGNLCGDAGVLELAKSRTLTHLNVA 323


>gi|428212495|ref|YP_007085639.1| hypothetical protein Oscil6304_2053 [Oscillatoria acuminata PCC
           6304]
 gi|428000876|gb|AFY81719.1| leucine-rich repeat (LRR) protein [Oscillatoria acuminata PCC 6304]
          Length = 455

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 117/357 (32%), Positives = 176/357 (49%), Gaps = 33/357 (9%)

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
           L GL+NL  L    N     + +   AGL NL  LDL    +I   + +L  L  L+ L 
Sbjct: 94  LAGLTNLEWLELSYNKI---EDIAPLAGLTNLEWLDL-SYNKIE-DIASLANLNNLKFLA 148

Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT-AAC 220
           I+  N I   D+ PL+ LTNL+ L +  +K+ +  +A    L +LT L+L G  +   A 
Sbjct: 149 IR-DNQI--EDVAPLTNLTNLEVLWLDENKIGE--VASFASLTQLTQLHLSGNQIEDVAP 203

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
           L +L+ L SL +LN N+ +           +  L  L L  NEI D  L  LKGL  +  
Sbjct: 204 LANLTNLESL-WLNENKIK----DVASLVSMTKLTQLYLSSNEIED--LAPLKGLPEMAE 256

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           L L++  I +  +  L  L NL  LEL++ Q+    +  L+ LT L  + L+   I + S
Sbjct: 257 LQLNNNQIVN--VAPLASLTNLTTLELNENQI--KDIAPLASLTQLGFLQLTKNQIVNIS 312

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
              LA L+ L++L L   +I D  +A L SLT LT L L   +I D   A L +   L S
Sbjct: 313 --PLATLTKLETLQLLYNEIKD--VAPLASLTNLTFLTLGENQIKD--VAPLASLTELTS 366

Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
           L++    + D  +  + +L+ LT L+LS N     K +  ++ LT L  L++ N+ I
Sbjct: 367 LDLSNNEIKD--IDPLANLTQLTFLHLSDN---QIKDVAPLASLTQLKHLHLRNNEI 418



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 145/306 (47%), Gaps = 41/306 (13%)

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
           D+ PL+GLTNL+ L++S +K+ D  IA L GL  L  L+L    +      SL+ L +L 
Sbjct: 90  DIAPLAGLTNLEWLELSYNKIED--IAPLAGLTNLEWLDLSYNKIEDIA--SLANLNNLK 145

Query: 232 YLNLNRCQLSDDG--------------------CEKFSKIGSLKVLNLGFNEITDECLVH 271
           +L +   Q+ D                         F+ +  L  L+L  N+I D  +  
Sbjct: 146 FLAIRDNQIEDVAPLTNLTNLEVLWLDENKIGEVASFASLTQLTQLHLSGNQIED--VAP 203

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
           L  LTNLESL L+   I D  + +L  +  L  L LS  ++    L  L GL  +  + L
Sbjct: 204 LANLTNLESLWLNENKIKD--VASLVSMTKLTQLYLSSNEI--EDLAPLKGLPEMAELQL 259

Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
           +   I +  +  LA L++L +L L+  QI D  +A L SLT L  L L   +I +     
Sbjct: 260 NNNQIVN--VAPLASLTNLTTLELNENQIKD--IAPLASLTQLGFLQLTKNQIVNISP-- 313

Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
           L     L +L++    + D  V  +  L++LT L L +N     K +  ++ LT L SL+
Sbjct: 314 LATLTKLETLQLLYNEIKD--VAPLASLTNLTFLTLGEN---QIKDVAPLASLTELTSLD 368

Query: 452 VSNSRI 457
           +SN+ I
Sbjct: 369 LSNNEI 374



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 109/223 (48%), Gaps = 26/223 (11%)

Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
           D   E  SK+  L +     +EI D  +  L GLTNLE L L    I D  +  L GL N
Sbjct: 69  DRAQESLSKMTELGIRG---DEIKD--IAPLAGLTNLEWLELSYNKIED--IAPLAGLTN 121

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN---LDAR 358
           L+ L+LS  ++       ++ L NL   NL F  I D  +  +A L++L +L    LD  
Sbjct: 122 LEWLDLSYNKI-----EDIASLANLN--NLKFLAIRDNQIEDVAPLTNLTNLEVLWLDEN 174

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
           +I +  +A+  SLT LT L L G +I D   A L N  NL SL +    + D  V  +  
Sbjct: 175 KIGE--VASFASLTQLTQLHLSGNQIED--VAPLANLTNLESLWLNENKIKD--VASLVS 228

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
           ++ LT L LS N  + D  L  + GL  +  L ++N++I +  
Sbjct: 229 MTKLTQLYLSSN-EIED--LAPLKGLPEMAELQLNNNQIVNVA 268



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 149/344 (43%), Gaps = 61/344 (17%)

Query: 27  AFRDCALQDLC-LGQYPGVNDKWMDV-----IASQGS--SLLSVDLSGSDVTDSGLIHLK 78
           A RD  ++D+  L     +   W+D      +AS  S   L  + LSG+ + D     L 
Sbjct: 148 AIRDNQIEDVAPLTNLTNLEVLWLDENKIGEVASFASLTQLTQLHLSGNQIEDVA--PLA 205

Query: 79  DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
           + +NL+SL  N   +I D     L  ++ LT L    N     + +    GL  + +L L
Sbjct: 206 NLTNLESLWLNEN-KIKDVA--SLVSMTKLTQLYLSSNEI---EDLAPLKGLPEMAELQL 259

Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGI 197
                 +  +VN+  L  L +L     N     D+ PL+ LT L  LQ++ +++ + S +
Sbjct: 260 N-----NNQIVNVAPLASLTNLTTLELNENQIKDIAPLASLTQLGFLQLTKNQIVNISPL 314

Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
           A L  L+ L LL  E        +  ++ L SL                      +L  L
Sbjct: 315 ATLTKLETLQLLYNE--------IKDVAPLASL---------------------TNLTFL 345

Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSG 316
            LG N+I D  +  L  LT L SL+L +  I D + L NLT L     L LSD Q+    
Sbjct: 346 TLGENQIKD--VAPLASLTELTSLDLSNNEIKDIDPLANLTQLT---FLHLSDNQI--KD 398

Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
           +  L+ LT L+ ++L    I D  + +L  L+ + + ++D   I
Sbjct: 399 VAPLASLTQLKHLHLRNNEIKD--IARLPNLTQMDNFSVDGNPI 440


>gi|291392871|ref|XP_002712822.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oryctolagus cuniculus]
          Length = 400

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 104/317 (32%), Positives = 169/317 (53%), Gaps = 48/317 (15%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L++LNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKTLNLRSCRHLS 183

Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 452 VSN-SRITSAGLRHLNH 467
           +   +RIT  GL  +  
Sbjct: 363 LYGCTRITKRGLERITQ 379



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 107/337 (31%), Positives = 171/337 (50%), Gaps = 36/337 (10%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
           RG+  +  LS RR+ +   QGM       N+  L+L  C  +     G   ++ +  L +
Sbjct: 68  RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           LN+  C  ITDS +  ++    LK L++     CS +T++G+  +  GLQ+L  LNL  C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKTLNLRSC 179

Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
              +       A +   +A G   L  L L  CQ L+D   +  S+ +  L++LNL F  
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 239

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
            I+D  L+HL  + +L SLNL SC  I D G+++L  G   L  L++S   +VG   L +
Sbjct: 240 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 299

Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
           ++ GL  L+S++L    ISD  + R +  +  L++LN+    +ITD GL  +   L+ LT
Sbjct: 300 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 359

Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
            +DL+G  RIT  G   +     L+ L +    +TD+
Sbjct: 360 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 174/331 (52%), Gaps = 56/331 (16%)

Query: 61  SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           S++LSG  ++TD+GL H  +++  +L++L+ + C QI+D  L  +               
Sbjct: 94  SLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRI--------------- 138

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
              AQ +K       L  L+L  C+ I   G L+   GL +L++LN++ C  ++D  +  
Sbjct: 139 ---AQYLKG------LEVLELGGCSNITNTGLLLIAWGLQRLKTLNLRSCRHLSDVGIGH 189

Query: 176 LSGLTN--------LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSL 224
           L+G+T         L+ L +  C K+TD  + ++ +GL  L LLNL  C  ++ A L  L
Sbjct: 190 LAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHL 249

Query: 225 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 279
           S +GSL  LNL  C  +SD G    + +GSL++  L++ F +++ D+ L ++ +GL  L+
Sbjct: 250 SHMGSLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLK 308

Query: 280 SLNLDSCGIGDEGL----VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLS 332
           SL+L SC I D+G+      + GL  L   +C+ ++D  +      HLS LT ++     
Sbjct: 309 SLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC- 366

Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
            T I+   L ++  L  LK LNL   Q+TD+
Sbjct: 367 -TRITKRGLERITQLPCLKVLNLGLWQMTDS 396


>gi|281210637|gb|EFA84803.1| hypothetical protein PPL_01796 [Polysphondylium pallidum PN500]
          Length = 739

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 105/333 (31%), Positives = 163/333 (48%), Gaps = 14/333 (4%)

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
           + HL+ +S +    F      T  GM+ F  + +L  L L  C   +  + +LK ++KLE
Sbjct: 363 MYHLQKVSLVACFGF------TDLGMENFKRMEHLTSLILTDCAVTNVSVKSLKQMVKLE 416

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY-LKGLQKLTLLNLEGCPVT 217
            L+++    ITDS +  LS L  LK L +S   +TD GI + +    KL  LNL    VT
Sbjct: 417 ELSLRNTK-ITDSGLTLLSSLVELKFLDLSACNITDEGITFAIPCFTKLETLNLSATSVT 475

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI--GSLKVLNLGFNEITDECLVHLKGL 275
              +  L+ L  L  L L+ C +  +    F  +   +LK+L++   +I     V+L+ L
Sbjct: 476 EKAIQKLTKL-PLVSLYLSNCPMIGNQSLFFITLFGKTLKLLDIFGTKIGGAGFVNLQRL 534

Query: 276 TNLESLNLD-SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
            NL  L L     + D  + +L  L N++ L+LSD  +  + +  L+ L  L  ++LS T
Sbjct: 535 PNLTVLKLPGRDSLSDAHISHLNALQNVRRLDLSDY-INITTIAPLNPLRYLCELSLSNT 593

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            ISD S+  + G S+L  LNLD  ++ D G++ L SL+ L  L L    I       L  
Sbjct: 594 KISDDSIDSIIGCSNLVILNLDRTRVRDIGVSKLISLS-LHTLSLMATGIRGDCLTTLSQ 652

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
              L SL I    + DA V  + DL +LT ++L
Sbjct: 653 LITLTSLNISSNDIQDAKVLPLLDLPNLTYIDL 685



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 162/369 (43%), Gaps = 58/369 (15%)

Query: 153 GLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQ-ISCSKVTDSGIAYLKGLQKLTLL 209
           G  K+E LN+ + + I  +D     LS + +L+ +  ++C   TD G+   K ++ LT L
Sbjct: 335 GNAKIEELNLNYQHLIVSNDFLQNCLSRMYHLQKVSLVACFGFTDLGMENFKRMEHLTSL 394

Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
            L  C VT   + SL  +  L  L+L   +++D G    S +  LK L+L    ITDE +
Sbjct: 395 ILTDCAVTNVSVKSLKQMVKLEELSLRNTKITDSGLTLLSSLVELKFLDLSACNITDEGI 454

Query: 270 VH-LKGLTNLESLNLDSCGIGDEGLVNLTGLC-------------------------NLK 303
              +   T LE+LNL +  + ++ +  LT L                           LK
Sbjct: 455 TFAIPCFTKLETLNLSATSVTEKAIQKLTKLPLVSLYLSNCPMIGNQSLFFITLFGKTLK 514

Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITD 362
            L++  T++G +G  +L  L NL  + L     +SD  +  L  L +++ L+L +  I  
Sbjct: 515 LLDIFGTKIGGAGFVNLQRLPNLTVLKLPGRDSLSDAHISHLNALQNVRRLDL-SDYINI 573

Query: 363 TGLAALTSL------------------------TGLTHLDLFGARITDSGAAYLRNFKNL 398
           T +A L  L                        + L  L+L   R+ D G + L +  +L
Sbjct: 574 TTIAPLNPLRYLCELSLSNTKISDDSIDSIIGCSNLVILNLDRTRVRDIGVSKLISL-SL 632

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
            +L +   G+    +  +  L +LT LN+S N     K L L+  L  L  +++ N++  
Sbjct: 633 HTLSLMATGIRGDCLTTLSQLITLTSLNISSNDIQDAKVLPLL-DLPNLTYIDLRNTQAF 691

Query: 459 SAGLRHLNH 467
           +A L+  NH
Sbjct: 692 TASLK-FNH 699



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 134/291 (46%), Gaps = 32/291 (10%)

Query: 55  QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH-LRGLSNLTSLSF 113
           Q   L  + L  + +TDSGL  L     L+ LD + C  I+D G+   +   + L +L+ 
Sbjct: 411 QMVKLEELSLRNTKITDSGLTLLSSLVELKFLDLSAC-NITDEGITFAIPCFTKLETLNL 469

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERC-------------------------TRIHG-G 147
               ++T + ++    L  LV L L  C                         T+I G G
Sbjct: 470 SAT-SVTEKAIQKLTKL-PLVSLYLSNCPMIGNQSLFFITLFGKTLKLLDIFGTKIGGAG 527

Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
            VNL+ L  L  L +   + ++D+ +  L+ L N++ L +S   +  + IA L  L+ L 
Sbjct: 528 FVNLQRLPNLTVLKLPGRDSLSDAHISHLNALQNVRRLDLS-DYINITTIAPLNPLRYLC 586

Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
            L+L    ++   +DS+    +L  LNL+R ++ D G  K   + SL  L+L    I  +
Sbjct: 587 ELSLSNTKISDDSIDSIIGCSNLVILNLDRTRVRDIGVSKLISL-SLHTLSLMATGIRGD 645

Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
           CL  L  L  L SLN+ S  I D  ++ L  L NL  ++L +TQ  ++ L+
Sbjct: 646 CLTTLSQLITLTSLNISSNDIQDAKVLPLLDLPNLTYIDLRNTQAFTASLK 696


>gi|403286756|ref|XP_003934642.1| PREDICTED: F-box/LRR-repeat protein 14, partial [Saimiri
           boliviensis boliviensis]
          Length = 349

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 170/317 (53%), Gaps = 48/317 (15%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 34  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 71

Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 72  LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 131

Query: 290 DEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
           D G+ +L G+         +L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 132 DVGIGHLAGMTRSAAEGCLSLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 191

Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 192 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 250

Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 251 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 310

Query: 452 VSN-SRITSAGLRHLNH 467
           +   +RIT  GL  +  
Sbjct: 311 LYGCTRITKRGLERITQ 327



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 108/337 (32%), Positives = 172/337 (51%), Gaps = 36/337 (10%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
           RG+  +  LS RR+ +   QGM       N+  L+L  C  +     G   ++ +  L +
Sbjct: 16  RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 69

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           LN+  C  ITDS +  ++    LK L++     CS +T++G+  +  GLQ+L  LNL  C
Sbjct: 70  LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 127

Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
              +       A +   +A G  SL  L L  CQ L+D   +  S+ +  L++LNL F  
Sbjct: 128 RHLSDVGIGHLAGMTRSAAEGCLSLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 187

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
            I+D  L+HL  + +L SLNL SC  I D G+++L  G   L  L++S   +VG   L +
Sbjct: 188 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 247

Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
           ++ GL  L+S++L    ISD  + R +  +  L++LN+    +ITD GL  +   L+ LT
Sbjct: 248 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 307

Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
            +DL+G  RIT  G   +     L+ L +    +TD+
Sbjct: 308 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 344



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 170/315 (53%), Gaps = 32/315 (10%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
           ++  +N++SL+ + C  ++D GL H  ++ + +L +L+      IT   +   A  +  L
Sbjct: 34  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 93

Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLK 183
             L+L  C+ I   G L+   GL +L+SLN++ C  ++D  +  L+G+T        +L+
Sbjct: 94  EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLSLE 153

Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
            L +  C K+TD  + ++ +GL  L LLNL  C  ++ A L  LS +GSL  LNL  C  
Sbjct: 154 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 213

Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVN 295
           +SD G    + +GSL++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+G+  
Sbjct: 214 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 272

Query: 296 LT----GLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
           +     GL  L   +C+ ++D  +      HLS LT ++      T I+   L ++  L 
Sbjct: 273 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG--CTRITKRGLERITQLP 329

Query: 349 SLKSLNLDARQITDT 363
            LK LNL   Q+TD+
Sbjct: 330 CLKVLNLGLWQMTDS 344



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           +TD  L H+ +  + L+ L+ +FC  ISD GL HL  + +L SL+ R  + I+  G+   
Sbjct: 163 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 222

Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           A G + L  LD+  C ++    +    +GL  L+SL++  C+   D   + +  +  L++
Sbjct: 223 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 282

Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           L I  C ++TD G+  + + L +LT ++L GC                        +++ 
Sbjct: 283 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 319

Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
            G E+ +++  LKVLNLG  ++TD
Sbjct: 320 RGLERITQLPCLKVLNLGLWQMTD 343


>gi|417302467|ref|ZP_12089567.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
           WH47]
 gi|327541207|gb|EGF27751.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
           WH47]
          Length = 341

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 2/249 (0%)

Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
           D  +K LS  + +  L +  +  +D  +  L  L  L  L + G     A   S+S L +
Sbjct: 83  DGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKAFDDAKAKSISGLPA 142

Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
           L  +      ++DDG    +++  L+ ++L  + +TD+ L  +  L  L  LNL    I 
Sbjct: 143 LVAVTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKIT 202

Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
            E    ++ L  L+ LEL++T  G  G+  ++ +  LE INL  T I + SL+   G +S
Sbjct: 203 GEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTS 261

Query: 350 LKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
           L  LN+D    IT+  +  + SL  L  L L    ++      L+  + L +L +   GL
Sbjct: 262 LTVLNVDNCPAITEEAIPVIISLPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGL 321

Query: 409 TDAGVKHIK 417
            +   K ++
Sbjct: 322 EEEPAKELE 330



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 25/226 (11%)

Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
           G ++ L  L  L+ L + +     D+  K +SGL  L ++    + VTD G + L  L +
Sbjct: 108 GTVLRLAALPNLKRLRV-YGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNE 166

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK--------------- 250
           L  ++L   PVT   L S+S L  L  LNL   +++ +  E  SK               
Sbjct: 167 LQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKITGEAFEPISKLPLESLELAETDFGP 226

Query: 251 --------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
                   I  L+ +NL   +I +E L   +G T+L  LN+D+C  I +E +  +  L +
Sbjct: 227 EGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIISLPH 286

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           LK L L  T V    L  L  L  LE++ ++  G+ +   ++L  +
Sbjct: 287 LKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKELEAM 332



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 4/184 (2%)

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
           L   + +  L + +    D  ++ L  L NLK L +       +  + +SGL  L ++  
Sbjct: 89  LSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKAFDDAKAKSISGLPALVAVTF 148

Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
             T ++D     LA L+ L+ ++L    +TD  LA++++L  LT L+L G +IT  G A+
Sbjct: 149 QDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKIT--GEAF 206

Query: 392 LRNFK-NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
               K  L SLE+        G+  I ++  L  +NL     + +++L+   G T L  L
Sbjct: 207 EPISKLPLESLELAETDFGPEGMPAIANIEGLEKINLWL-TKIDNESLKAFEGKTSLTVL 265

Query: 451 NVSN 454
           NV N
Sbjct: 266 NVDN 269



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 105/240 (43%), Gaps = 3/240 (1%)

Query: 230 LFYLNLNRCQLSD-DGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
           +  ++L     SD DG  K  S   ++  L +     +D  ++ L  L NL+ L +    
Sbjct: 69  VVVVDLREVAESDLDGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKA 128

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
             D    +++GL  L  +   DT V   G   L+ L  L+ ++L  + ++D +L  ++ L
Sbjct: 129 FDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTL 188

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
             L  LNL   +IT      ++ L  L  L+L        G   + N + L  + +    
Sbjct: 189 PKLTKLNLRGTKITGEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTK 247

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNH 467
           + +  +K  +  +SLT+LN+     +T++ + +I  L  L  L++  + ++   L  L  
Sbjct: 248 IDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIISLPHLKLLHLGKTSVSPDALPQLKP 307



 Score = 42.0 bits (97), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 74/181 (40%), Gaps = 7/181 (3%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  V L  S VTD  L  +     L  L+     +I+    E +  L  L SL     + 
Sbjct: 167 LQDVSLMNSPVTDKTLASISTLPKLTKLNLR-GTKITGEAFEPISKLP-LESLELAETD- 223

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
              +GM A A +  L K++L      +  L   +G   L  LN+  C  IT+  +  +  
Sbjct: 224 FGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIIS 283

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           L +LK L +  + V+   +  LK LQ+L  L +    +       L A+    + NL R 
Sbjct: 284 LPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKELEAM----FPNLKRF 339

Query: 239 Q 239
           +
Sbjct: 340 E 340


>gi|290989399|ref|XP_002677325.1| predicted protein [Naegleria gruberi]
 gi|284090932|gb|EFC44581.1| predicted protein [Naegleria gruberi]
          Length = 412

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 157/327 (48%), Gaps = 36/327 (11%)

Query: 94  ISDGGLEHLRGL--SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
           +SD  ++H  G   S++  L F      +   MK ++ + NL  L +++C       V L
Sbjct: 64  VSDK-IDHKWGFTGSSIKKLKFSHLTIKSTDFMKIYSNMKNLKSLSMKKCRIEKKDFVYL 122

Query: 152 KGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
             + +LESLNI   + N   +   K  + LTNLK          D GI+           
Sbjct: 123 MKIKQLESLNIIPHFSNITNEEICKICTNLTNLK----------DFGIS----------- 161

Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
              G  +    L  ++ + SL  L+++  +L ++  ++  K+  L  LN+G N      L
Sbjct: 162 ---GMSLQYKTLQYITNMKSLTSLDISNTELYEEYLQEIGKMTHLTSLNIGDNGTIP--L 216

Query: 270 VHLKGLTNLESLNLDSCGI--GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNL 326
            ++K L  L+SLN++   I  G   L  L  L +L  L +S   + + GL++L     +L
Sbjct: 217 QYIKSLAGLKSLNINGRFINNGFYELRELKDLHSLTELSVSHNTIKTKGLKYLIDTFPDL 276

Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
            S+++S+ G+  GS++K+  L  L  L++    I+D  L  +T L  LT L++   +ITD
Sbjct: 277 TSLDISYNGL--GSIKKIRKLKHLTKLDISNNSISDQDLIYITCLPQLTKLNISSNQITD 334

Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGV 413
           +GA    + ++LR++++    +T+  V
Sbjct: 335 NGALLFASMESLRNIDVRFNDITNDKV 361



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 119/244 (48%), Gaps = 24/244 (9%)

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
           +SG  +    L ++ +  +L SLD +   ++ +  L+ +  +++LTSL+   N  I  Q 
Sbjct: 160 ISGMSLQYKTLQYITNMKSLTSLDIS-NTELYEEYLQEIGKMTHLTSLNIGDNGTIPLQY 218

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVN--------LKGLMKLESLNIKWCNCITDSDMKP 175
           +K+ AGL +L          I+G  +N        LK L  L  L++   N I    +K 
Sbjct: 219 IKSLAGLKSL---------NINGRFINNGFYELRELKDLHSLTELSVS-HNTIKTKGLKY 268

Query: 176 L-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           L     +L SL IS + +    I  ++ L+ LT L++    ++   L  ++ L  L  LN
Sbjct: 269 LIDTFPDLTSLDISYNGL--GSIKKIRKLKHLTKLDISNNSISDQDLIYITCLPQLTKLN 326

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           ++  Q++D+G   F+ + SL+ +++ FN+IT++ +   +G+ NLE L   S  +      
Sbjct: 327 ISSNQITDNGALLFASMESLRNIDVRFNDITNDKV--FQGMINLEKLKFKSFSLEPSSRK 384

Query: 295 NLTG 298
           N  G
Sbjct: 385 NKDG 388



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 111/234 (47%), Gaps = 34/234 (14%)

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL--DSCGIGDEGLVNL-T 297
           S D  + +S + +LK L++    I  +  V+L  +  LESLN+      I +E +  + T
Sbjct: 91  STDFMKIYSNMKNLKSLSMKKCRIEKKDFVYLMKIKQLESLNIIPHFSNITNEEICKICT 150

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
            L NLK   +S   +    L++++ + +L S+++S T + +  L+++  ++ L SLN   
Sbjct: 151 NLTNLKDFGISGMSLQYKTLQYITNMKSLTSLDISNTELYEEYLQEIGKMTHLTSLN--- 207

Query: 358 RQITDTG---LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
             I D G   L  + SL GL  L++ G R  ++G      F  LR L             
Sbjct: 208 --IGDNGTIPLQYIKSLAGLKSLNING-RFINNG------FYELREL------------- 245

Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHLNH 467
             KDL SLT L++S N   T     LI     L SL++S + + S   +R L H
Sbjct: 246 --KDLHSLTELSVSHNTIKTKGLKYLIDTFPDLTSLDISYNGLGSIKKIRKLKH 297



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 8/172 (4%)

Query: 302 LKCLELSDTQVGSSG-LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-- 358
           +K L+ S   + S+  ++  S + NL+S+++    I       L  +  L+SLN+     
Sbjct: 79  IKKLKFSHLTIKSTDFMKIYSNMKNLKSLSMKKCRIEKKDFVYLMKIKQLESLNIIPHFS 138

Query: 359 QITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
            IT+  +  + T+LT L    + G  +      Y+ N K+L SL+I    L +  ++ I 
Sbjct: 139 NITNEEICKICTNLTNLKDFGISGMSLQYKTLQYITNMKSLTSLDISNTELYEEYLQEIG 198

Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
            ++ LT LN+  N  +    L+ I  L GL SLN+ N R  + G   L   +
Sbjct: 199 KMTHLTSLNIGDNGTI---PLQYIKSLAGLKSLNI-NGRFINNGFYELRELK 246


>gi|290987592|ref|XP_002676506.1| predicted protein [Naegleria gruberi]
 gi|284090109|gb|EFC43762.1| predicted protein [Naegleria gruberi]
          Length = 259

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 123/256 (48%), Gaps = 8/256 (3%)

Query: 179 LTNLKSLQISCSKVT----DSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           L N+ +L+ +CS+      DSGI   +K L KL +         A C   +  L SL   
Sbjct: 6   LPNIVTLEWTCSRYQKFTFDSGIFGTMKQLTKLKIGENNIGDQNAKCFIEMKQLTSL--- 62

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           ++    +S +G +   ++  L  LN+  N + +    ++  L  L +LN+    IG++G 
Sbjct: 63  DVYHNNISKEGAKFIGEMTQLTYLNVNTNNVGELGAKYISKLNQLITLNIGLNSIGEQGA 122

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
             ++ +  L  L +    +G+ G  H+S +  L S+N    G+ D  ++ ++ L+ L  L
Sbjct: 123 EYISEMKQLTDLNIYSCNIGNRGANHISRMKQLISLNTGRNGLDDEGVKYISELNQLNFL 182

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
           N+    I++ GL  ++ +  + HLD+    I D GA  +   K L  L+I    + + G 
Sbjct: 183 NIADSNISEEGLNYISGMKQIIHLDISNNFIDDEGAEIISRMKQLTRLDISNNSIGEEGT 242

Query: 414 KHIKDLSSLTLLNLSQ 429
           K+I ++  LT L++ +
Sbjct: 243 KYISEMKKLTYLDIGE 258



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 95/187 (50%), Gaps = 1/187 (0%)

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           +  L  L +    IGD+       +  L  L++    +   G + +  +T L  +N++  
Sbjct: 32  MKQLTKLKIGENNIGDQNAKCFIEMKQLTSLDVYHNNISKEGAKFIGEMTQLTYLNVNTN 91

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            + +   + ++ L+ L +LN+    I + G   ++ +  LT L+++   I + GA ++  
Sbjct: 92  NVGELGAKYISKLNQLITLNIGLNSIGEQGAEYISEMKQLTDLNIYSCNIGNRGANHISR 151

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
            K L SL     GL D GVK+I +L+ L  LN++ + N++++ L  ISG+  ++ L++SN
Sbjct: 152 MKQLISLNTGRNGLDDEGVKYISELNQLNFLNIA-DSNISEEGLNYISGMKQIIHLDISN 210

Query: 455 SRITSAG 461
           + I   G
Sbjct: 211 NFIDDEG 217



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 100/214 (46%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N I D + K    +  L SL +  + ++  G  ++  + +LT LN+    V       +S
Sbjct: 43  NNIGDQNAKCFIEMKQLTSLDVYHNNISKEGAKFIGEMTQLTYLNVNTNNVGELGAKYIS 102

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            L  L  LN+    + + G E  S++  L  LN+    I +    H+  +  L SLN   
Sbjct: 103 KLNQLITLNIGLNSIGEQGAEYISEMKQLTDLNIYSCNIGNRGANHISRMKQLISLNTGR 162

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
            G+ DEG+  ++ L  L  L ++D+ +   GL ++SG+  +  +++S   I D     ++
Sbjct: 163 NGLDDEGVKYISELNQLNFLNIADSNISEEGLNYISGMKQIIHLDISNNFIDDEGAEIIS 222

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
            +  L  L++    I + G   ++ +  LT+LD+
Sbjct: 223 RMKQLTRLDISNNSIGEEGTKYISEMKKLTYLDI 256


>gi|290993787|ref|XP_002679514.1| predicted protein [Naegleria gruberi]
 gi|284093131|gb|EFC46770.1| predicted protein [Naegleria gruberi]
          Length = 282

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 133/316 (42%), Gaps = 76/316 (24%)

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           +T LKSL +  + + D G+ ++  L+                   L +LG      L RC
Sbjct: 1   ITTLKSLNLHHNNIEDEGVEFISDLK-------------------LESLG------LCRC 35

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI---------- 288
            L+        KI SLK L+L  N I DEC  +L  LT+LE L+L    I          
Sbjct: 36  ALTSKSTSFLCKITSLKKLDLSENIINDECGFYLSMLTDLEELDLHDNSIEGKCFKEFSS 95

Query: 289 ---------------GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
                           +E ++ L+   +LK L LS   +G S + HLS LTNL+ + L+ 
Sbjct: 96  LKKLKTLKLCQNRISQEEAMIYLSQTVSLKSLNLSQNNIGQSSI-HLSNLTNLKELELNL 154

Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
             I+ G L   + L  L+ L +    +       L+ L  L  L +FG  +  +   ++ 
Sbjct: 155 CKITKGGLSFFSNLKKLEILKISQNSLGYDDFEELSHLVRLRILSIFGCGLEKNSTNFIG 214

Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
           N K LR+LE+    + DAG      L+SL                   SGL  L  L + 
Sbjct: 215 NIKTLRNLEMFSNNIYDAG------LASL-------------------SGLVNLQILKLD 249

Query: 454 NSRITSAGLRHLNHAR 469
           ++RIT  G++HL+  +
Sbjct: 250 STRITDTGIQHLSQMK 265



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 123/256 (48%), Gaps = 5/256 (1%)

Query: 155 MKLESLNIKWCNC-ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
           +KLESL +  C C +T      L  +T+LK L +S + + D    YL  L  L  L+L  
Sbjct: 25  LKLESLGL--CRCALTSKSTSFLCKITSLKKLDLSENIINDECGFYLSMLTDLEELDLHD 82

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLGFNEITDECLVHL 272
             +   C    S+L  L  L L + ++S +    + S+  SLK LNL  N I     +HL
Sbjct: 83  NSIEGKCFKEFSSLKKLKTLKLCQNRISQEEAMIYLSQTVSLKSLNLSQNNIGQSS-IHL 141

Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
             LTNL+ L L+ C I   GL   + L  L+ L++S   +G      LS L  L  +++ 
Sbjct: 142 SNLTNLKELELNLCKITKGGLSFFSNLKKLEILKISQNSLGYDDFEELSHLVRLRILSIF 201

Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
             G+   S   +  + +L++L + +  I D GLA+L+ L  L  L L   RITD+G  +L
Sbjct: 202 GCGLEKNSTNFIGNIKTLRNLEMFSNNIYDAGLASLSGLVNLQILKLDSTRITDTGIQHL 261

Query: 393 RNFKNLRSLEICGGGL 408
              K L  L +    L
Sbjct: 262 SQMKELEILRLNSNSL 277



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 2/171 (1%)

Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
            ++ L   + L+SLN+   N I  S +  LS LTNLK L+++  K+T  G+++   L+KL
Sbjct: 114 AMIYLSQTVSLKSLNLSQNN-IGQSSI-HLSNLTNLKELELNLCKITKGGLSFFSNLKKL 171

Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
            +L +    +     + LS L  L  L++  C L  +       I +L+ L +  N I D
Sbjct: 172 EILKISQNSLGYDDFEELSHLVRLRILSIFGCGLEKNSTNFIGNIKTLRNLEMFSNNIYD 231

Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
             L  L GL NL+ L LDS  I D G+ +L+ +  L+ L L+   +G+  L
Sbjct: 232 AGLASLSGLVNLQILKLDSTRITDTGIQHLSQMKELEILRLNSNSLGNETL 282


>gi|290982223|ref|XP_002673830.1| predicted protein [Naegleria gruberi]
 gi|284087416|gb|EFC41086.1| predicted protein [Naegleria gruberi]
          Length = 572

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 149/319 (46%), Gaps = 36/319 (11%)

Query: 151 LKGLMKLESLNIKWC----NCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAYLKGLQK 205
            + + KLES+   +C    N + + +MK +S L NLK    IS  ++ +  +  L  L+K
Sbjct: 214 FEHIRKLESITDLFCLTFRNNLFEEEMKFISPLGNLKKFHFISKGRIKEEAVKDLSTLKK 273

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
           L  L+L+   +TA                             F  + ++K LNL  N I 
Sbjct: 274 LEELHLDNNLITAC---------------------------NFPYLENMKSLNLQNNRIG 306

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
           +E  ++L  L+NL  LNL +  IG +GL     L  LK L LS  QVG  G  +LS    
Sbjct: 307 NEGAINLCSLSNLTELNLSNNLIGGQGLKYFYKLSQLKILNLSSNQVGDVGANYLSENVK 366

Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           LE+++L  + I +  LR    L  LK L L+  +I + GL  L++   L +L +    I 
Sbjct: 367 LENLSLKESLIGEEGLRNFGNLKLLKYLMLNNNKIGN-GLKYLSNCNELEYLHVGSNDIG 425

Query: 386 DSGAA--YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
           D      +   F+NL  L+I    ++      I  ++ L  LN+S N ++ D  L L+S 
Sbjct: 426 DESVIELFRSEFRNLIHLDISHNYVSYKCCDVISKMNQLKELNISNNPSIGDTGLSLLSP 485

Query: 444 LTGLVSLNVSNSRITSAGL 462
           L+ ++ L  +N  ++ +G+
Sbjct: 486 LS-IIKLEANNCGVSDSGI 503



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 139/295 (47%), Gaps = 15/295 (5%)

Query: 82  NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
           NL+   F    +I +  ++ L  L  L  L    NN ITA     F  L N+  L+L+  
Sbjct: 248 NLKKFHFISKGRIKEEAVKDLSTLKKLEELHLD-NNLITACN---FPYLENMKSLNLQNN 303

Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
              + G +NL  L  L  LN+   N I    +K    L+ LK L +S ++V D G  YL 
Sbjct: 304 RIGNEGAINLCSLSNLTELNLS-NNLIGGQGLKYFYKLSQLKILNLSSNQVGDVGANYLS 362

Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
              KL  L+L+   +    L +   L  L YL LN  ++  +G +  S    L+ L++G 
Sbjct: 363 ENVKLENLSLKESLIGEEGLRNFGNLKLLKYLMLNNNKIG-NGLKYLSNCNELEYLHVGS 421

Query: 262 NEITDECLVHL--KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLR 318
           N+I DE ++ L      NL  L++    +  +    ++ +  LK L +S+   +G +GL 
Sbjct: 422 NDIGDESVIELFRSEFRNLIHLDISHNYVSYKCCDVISKMNQLKELNISNNPSIGDTGLS 481

Query: 319 HLSGLT--NLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
            LS L+   LE+ N    G+SD G +  L     + +L++ + ++++  L AL S
Sbjct: 482 LLSPLSIIKLEANN---CGVSDSGIIDYLNFEPKISTLHIKSNKLSNMTLQALIS 533


>gi|397499401|ref|XP_003820442.1| PREDICTED: F-box/LRR-repeat protein 14 [Pan paniscus]
          Length = 561

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 169/317 (53%), Gaps = 48/317 (15%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 246 IQGMANIESLNLSGCYNLTDNGLGHA----------------------FVQEIGSLRALN 283

Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 284 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 343

Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 344 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 403

Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 404 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 462

Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 463 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 522

Query: 452 VSN-SRITSAGLRHLNH 467
           +   +RIT  GL  +  
Sbjct: 523 LYGCTRITKRGLERITQ 539



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 101/319 (31%), Positives = 170/319 (53%), Gaps = 40/319 (12%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
           ++  +N++SL+ + C  ++D GL H  ++ + +L +L+      IT   +   A  +  L
Sbjct: 246 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 305

Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
             L+L  C+ I   G L+   GL +L+SLN++ C  ++D  +  L+G+T         L+
Sbjct: 306 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 365

Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
            L +  C K+TD  + ++ +GL  L LLNL  C  ++ A L  LS +GSL  LNL  C  
Sbjct: 366 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 425

Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
           +SD G    + +GSL++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+G+  
Sbjct: 426 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 484

Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGL----RHLSGLTNLESINLSFTGISDGSLRKL 344
               + GL  L   +C+ ++D      GL     HLS LT ++      T I+   L ++
Sbjct: 485 MVRQMHGLRTLNIGQCVRITD-----KGLELIAEHLSQLTGIDLYGC--TRITKRGLERI 537

Query: 345 AGLSSLKSLNLDARQITDT 363
             L  LK LNL   Q+TD+
Sbjct: 538 TQLPCLKVLNLGLWQMTDS 556



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 109/339 (32%), Positives = 172/339 (50%), Gaps = 40/339 (11%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
           RG+  +  LS RR+ +   QGM       N+  L+L  C  +     G   ++ +  L +
Sbjct: 228 RGIRRVQILSLRRSLSYVIQGM------ANIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 281

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSG---IAYLKGLQKLTLLNLE 212
           LN+  C  ITDS +  ++    LK L++     CS +T++G   IA+  GLQ+L  LNL 
Sbjct: 282 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAW--GLQRLKSLNLR 337

Query: 213 GCPVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF 261
            C   +       A +   +A G   L  L L  CQ L+D   +  S+ +  L++LNL F
Sbjct: 338 SCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSF 397

Query: 262 -NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGL 317
              I+D  L+HL  + +L SLNL SC  I D G+++L  G   L  L++S   +VG   L
Sbjct: 398 CGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSL 457

Query: 318 RHLS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTG 373
            +++ GL  L+S++L    ISD  + R +  +  L++LN+    +ITD GL  +   L+ 
Sbjct: 458 AYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQ 517

Query: 374 LTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
           LT +DL+G  RIT  G   +     L+ L +    +TD+
Sbjct: 518 LTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 556



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           +TD  L H+ +  + L+ L+ +FC  ISD GL HL  + +L SL+ R  + I+  G+   
Sbjct: 375 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 434

Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           A G + L  LD+  C ++    +    +GL  L+SL++  C+   D   + +  +  L++
Sbjct: 435 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 494

Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           L I  C ++TD G+  + + L +LT ++L GC                        +++ 
Sbjct: 495 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGC-----------------------TRITK 531

Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
            G E+ +++  LKVLNLG  ++TD
Sbjct: 532 RGLERITQLPCLKVLNLGLWQMTD 555


>gi|320165520|gb|EFW42419.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 694

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 140/318 (44%), Gaps = 25/318 (7%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N IT       + LT L  L ++ +++TD       GL  LT+L L G  +T    +  +
Sbjct: 77  NQITSIPASAFANLTALTELDLTVNQITDISANAFAGLAALTMLFLPGNNITGIPANVFA 136

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            L +L  LNL+  QL+    + F+ + +L+ LNL  N+IT         L  L+SL L  
Sbjct: 137 GLTALLVLNLSGNQLASIPADAFTGLTALQTLNLQSNQITSISAAGFADLAALKSLGLSG 196

Query: 286 CGIGDE-----------GLVNL-------------TGLCNLKCLELSDTQVGSSGLRHLS 321
             +G             G ++L             TGL  L  L LS+  + S     ++
Sbjct: 197 NRLGSNLANAFTNQSALGFIDLSNNQITSLLADAFTGLAALNTLFLSNNNITSIPANAVT 256

Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
           GLT L+ +++S    +       AGL++L  L+L   Q T     A T LT LT L L  
Sbjct: 257 GLTALKYLDVSGNQFTSFPASSFAGLTALTYLSLSNNQATSISAWAFTGLTALTSLQLSN 316

Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
            + TD  A        L  L + G  LT      + DL+ L  L+LS N  +T       
Sbjct: 317 NQFTDISANAFAGLPALMELGLAGNQLTSIPTSALLDLTLLNFLSLSAN-QITSIPASAF 375

Query: 442 SGLTGLVSLNVSNSRITS 459
           +GLT L SL +S +++TS
Sbjct: 376 TGLTALFSLILSRNQLTS 393



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 144/339 (42%), Gaps = 4/339 (1%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL- 151
           QI+         L+ LT L    N  IT     AFAGL  L  L L     I G   N+ 
Sbjct: 78  QITSIPASAFANLTALTELDLTVNQ-ITDISANAFAGLAALTMLFLPG-NNITGIPANVF 135

Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
            GL  L  LN+   N +        +GLT L++L +  +++T    A    L  L  L L
Sbjct: 136 AGLTALLVLNLSG-NQLASIPADAFTGLTALQTLNLQSNQITSISAAGFADLAALKSLGL 194

Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
            G  + +   ++ +   +L +++L+  Q++    + F+ + +L  L L  N IT      
Sbjct: 195 SGNRLGSNLANAFTNQSALGFIDLSNNQITSLLADAFTGLAALNTLFLSNNNITSIPANA 254

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
           + GLT L+ L++           +  GL  L  L LS+ Q  S      +GLT L S+ L
Sbjct: 255 VTGLTALKYLDVSGNQFTSFPASSFAGLTALTYLSLSNNQATSISAWAFTGLTALTSLQL 314

Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
           S    +D S    AGL +L  L L   Q+T    +AL  LT L  L L   +IT   A+ 
Sbjct: 315 SNNQFTDISANAFAGLPALMELGLAGNQLTSIPTSALLDLTLLNFLSLSANQITSIPASA 374

Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
                 L SL +    LT         L+ L +L+L  N
Sbjct: 375 FTGLTALFSLILSRNQLTSIPAAAFSGLTLLNILSLDTN 413



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 122/317 (38%), Gaps = 50/317 (15%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           QI+D       GL+ LT L F   N IT      FAGL  L+ L+L              
Sbjct: 102 QITDISANAFAGLAALTML-FLPGNNITGIPANVFAGLTALLVLNLSGNQLASIPADAFT 160

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV---------TDSGIAYL--- 200
           GL  L++LN++  N IT       + L  LKSL +S +++           S + ++   
Sbjct: 161 GLTALQTLNLQ-SNQITSISAAGFADLAALKSLGLSGNRLGSNLANAFTNQSALGFIDLS 219

Query: 201 ------------KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
                        GL  L  L L    +T+   ++++ L +L YL+++  Q +      F
Sbjct: 220 NNQITSLLADAFTGLAALNTLFLSNNNITSIPANAVTGLTALKYLDVSGNQFTSFPASSF 279

Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL--- 305
           + + +L  L+L  N+ T        GLT L SL L +    D       GL  L  L   
Sbjct: 280 AGLTALTYLSLSNNQATSISAWAFTGLTALTSLQLSNNQFTDISANAFAGLPALMELGLA 339

Query: 306 ---------------------ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
                                 LS  Q+ S      +GLT L S+ LS   ++       
Sbjct: 340 GNQLTSIPTSALLDLTLLNFLSLSANQITSIPASAFTGLTALFSLILSRNQLTSIPAAAF 399

Query: 345 AGLSSLKSLNLDARQIT 361
           +GL+ L  L+LD    T
Sbjct: 400 SGLTLLNILSLDTNPFT 416



 Score = 45.1 bits (105), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 88/222 (39%), Gaps = 33/222 (14%)

Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
           +   GL+ L +L F  NN IT+    A  GL  L  LD+           +  GL  L  
Sbjct: 229 DAFTGLAALNTL-FLSNNNITSIPANAVTGLTALKYLDVSGNQFTSFPASSFAGLTALTY 287

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG-----C 214
           L++   N  T       +GLT L SLQ+S ++ TD       GL  L  L L G      
Sbjct: 288 LSLSN-NQATSISAWAFTGLTALTSLQLSNNQFTDISANAFAGLPALMELGLAGNQLTSI 346

Query: 215 P-------------------VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
           P                   +T+    + + L +LF L L+R QL+      FS +  L 
Sbjct: 347 PTSALLDLTLLNFLSLSANQITSIPASAFTGLTALFSLILSRNQLTSIPAAAFSGLTLLN 406

Query: 256 VLNLGFNEITDECLVHLKGLTN-------LESLNLDSCGIGD 290
           +L+L  N  T       +GL N        ESL+ ++   G+
Sbjct: 407 ILSLDTNPFTTLPPGLFQGLPNDIDLSLYYESLSPNNFSFGE 448


>gi|320169501|gb|EFW46400.1| tyrosine-protein kinase Src42A [Capsaspora owczarzaki ATCC 30864]
          Length = 1286

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 151/356 (42%), Gaps = 26/356 (7%)

Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
           G+ N T+  +  NN IT+    AF GL  L  L      +++G                 
Sbjct: 58  GIPNTTTQLYLNNNQITSIPTSAFPGLTVLQIL------QVYG----------------- 94

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
             N IT       +GLT + SLQ++ +++TD       GL  L+ L L    +++    +
Sbjct: 95  --NQITYIPADAFTGLTAVISLQLNNNRLTDISANAFTGLSALSQLFLNNNRLSSVPAGA 152

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
            + L +L  L LN  +++      F+ + +L  L L FN+IT         LT L  L L
Sbjct: 153 FAGLPALKQLQLNSNRITSISATLFTGLTALTWLRLEFNQITSIPASVFTDLTGLSVLVL 212

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
            S  I        TGL  L  +++S   + S      +GLT    ++L    I+  S   
Sbjct: 213 RSNNITSIPPYAFTGLTALSQIDVSINLITSIPAFAFAGLTAATYLDLYINQITSISDSA 272

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
             GL++L  LN+D  ++T         LT L +L L+  ++T            L SL++
Sbjct: 273 FTGLTALTFLNMDNNRLTSILSTTFAGLTALQYLYLWSNQVTSIAPNTFAGLTALNSLQL 332

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
               +T        DLS L  L+L+ N  +T       + LT L  L++ N+RITS
Sbjct: 333 YDNQITSIPANAFDDLSVLNTLSLNDNL-ITSVPASAFANLTSLQYLSLFNNRITS 387



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 165/369 (44%), Gaps = 7/369 (1%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN 150
           QI+    +   GL+ + SL    NN +T     AF GL  L +L L   R + +  G   
Sbjct: 96  QITYIPADAFTGLTAVISLQLN-NNRLTDISANAFTGLSALSQLFLNNNRLSSVPAGA-- 152

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
             GL  L+ L +   N IT       +GLT L  L++  +++T    +    L  L++L 
Sbjct: 153 FAGLPALKQLQLN-SNRITSISATLFTGLTALTWLRLEFNQITSIPASVFTDLTGLSVLV 211

Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
           L    +T+    + + L +L  ++++   ++      F+ + +   L+L  N+IT     
Sbjct: 212 LRSNNITSIPPYAFTGLTALSQIDVSINLITSIPAFAFAGLTAATYLDLYINQITSISDS 271

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
              GLT L  LN+D+  +         GL  L+ L L   QV S      +GLT L S+ 
Sbjct: 272 AFTGLTALTFLNMDNNRLTSILSTTFAGLTALQYLYLWSNQVTSIAPNTFAGLTALNSLQ 331

Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
           L    I+         LS L +L+L+   IT    +A  +LT L +L LF  RIT   A 
Sbjct: 332 LYDNQITSIPANAFDDLSVLNTLSLNDNLITSVPASAFANLTSLQYLSLFNNRITSIAAN 391

Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
              +   L SL +    +T+        LS+LT L+L  N ++T  +    S L+ +  +
Sbjct: 392 AFDDLTALGSLHLHTNRITNIPSTAFASLSALTQLHLYNN-SITSISAGTFSSLSAVTYM 450

Query: 451 NVSNSRITS 459
            + +++I+S
Sbjct: 451 YMYDNQISS 459



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 142/345 (41%), Gaps = 29/345 (8%)

Query: 86  LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
           L+FN    I       L GLS L      R+N IT+    AF GL  L ++D+       
Sbjct: 188 LEFNQITSIPASVFTDLTGLSVLV----LRSNNITSIPPYAFTGLTALSQIDVS------ 237

Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
                               N IT       +GLT    L +  +++T    +   GL  
Sbjct: 238 -------------------INLITSIPAFAFAGLTAATYLDLYINQITSISDSAFTGLTA 278

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
           LT LN++   +T+    + + L +L YL L   Q++      F+ + +L  L L  N+IT
Sbjct: 279 LTFLNMDNNRLTSILSTTFAGLTALQYLYLWSNQVTSIAPNTFAGLTALNSLQLYDNQIT 338

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
                    L+ L +L+L+   I          L +L+ L L + ++ S        LT 
Sbjct: 339 SIPANAFDDLSVLNTLSLNDNLITSVPASAFANLTSLQYLSLFNNRITSIAANAFDDLTA 398

Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           L S++L    I++      A LS+L  L+L    IT       +SL+ +T++ ++  +I+
Sbjct: 399 LGSLHLHTNRITNIPSTAFASLSALTQLHLYNNSITSISAGTFSSLSAVTYMYMYDNQIS 458

Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
              A       +L+ L + G  +T         L++LT L+L  N
Sbjct: 459 SIPANTFTGMTSLKLLYLSGNQITSVSANAFSGLTALTQLSLYLN 503



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 141/348 (40%), Gaps = 36/348 (10%)

Query: 117 NAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
           N IT+    AF GL  L  L+++  R T I        GL  L+ L + W N +T     
Sbjct: 263 NQITSISDSAFTGLTALTFLNMDNNRLTSILS--TTFAGLTALQYLYL-WSNQVTSIAPN 319

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
             +GLT L SLQ+  +++T                      + A   D LS L +   L+
Sbjct: 320 TFAGLTALNSLQLYDNQITS---------------------IPANAFDDLSVLNT---LS 355

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS---CGIGDE 291
           LN   ++      F+ + SL+ L+L  N IT         LT L SL+L +     I   
Sbjct: 356 LNDNLITSVPASAFANLTSLQYLSLFNNRITSIAANAFDDLTALGSLHLHTNRITNIPST 415

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
              +L+ L  L     S T + +     LS +T +   +     IS        G++SLK
Sbjct: 416 AFASLSALTQLHLYNNSITSISAGTFSSLSAVTYMYMYD---NQISSIPANTFTGMTSLK 472

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
            L L   QIT     A + LT LT L L+  RIT   AA       L +L +    ++  
Sbjct: 473 LLYLSGNQITSVSANAFSGLTALTQLSLYLNRITSISAAAFPGLTALLTLSLSDNQISSI 532

Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
                 DL+ L  L L  N  +T        GL  L +L + N+ ITS
Sbjct: 533 PSSAFTDLTLLKFLYLYNN-QITSIAANAFVGLPALSTLLLHNNTITS 579


>gi|320168649|gb|EFW45548.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 977

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 160/361 (44%), Gaps = 16/361 (4%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIK 163
           SN T LS + N  IT+  + AF GL  L+ L L   + T I        GL  L  L +K
Sbjct: 58  SNTTHLSLQSNQ-ITSISVNAFTGLTALIWLYLTDNQITSISANA--FTGLSALTYLVLK 114

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE-----GCPVTA 218
             N I+       +GL+ LK + +S +++ D   A   GL +++ L L        P TA
Sbjct: 115 E-NEISSISANAFTGLSALKEVDLSNNRIIDLPTAAFAGLPQMSTLRLSRNQFNSIPSTA 173

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
                L+AL  L YL+ N   +S      F+   +L  L L  N ITD        LT L
Sbjct: 174 -ITTGLTALKEL-YLDANN--ISSISTAAFTGFPALTYLYLADNPITDIPANTFADLTEL 229

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
             L L +  I         GL  L  L+LS  ++ S      +GLT L  + L    +S 
Sbjct: 230 RHLYLRNNQISSVSATAFAGLSALNYLDLSMNKISSLSASVFTGLTALSILYLQSNQLSS 289

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
                   L++L+ L L + Q T+   AA T L  L  L L G  +T    + L +   L
Sbjct: 290 IPASSFTDLAALQHLYLSSNQFTNLPAAAFTGLDALIVLWLSGNPLTSVPTSALTSLSAL 349

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
           R+L++    +T         L++LT+L L  N  +   +    +GLT L +L++SN+ +T
Sbjct: 350 RNLDLSSTKITSISANAFAGLNALTVLALHYN-PIASISGSAFTGLTALTALHLSNTPLT 408

Query: 459 S 459
           +
Sbjct: 409 T 409



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 145/354 (40%), Gaps = 30/354 (8%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           QI+        GLS LT L  + N  I++    AF GL  L ++DL     I        
Sbjct: 93  QITSISANAFTGLSALTYLVLKENE-ISSISANAFTGLSALKEVDLSNNRIIDLPTAAFA 151

Query: 153 GLMKLESLNIK--WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
           GL ++ +L +     N I  + +   +GLT LK L +  + ++    A   G   LT L 
Sbjct: 152 GLPQMSTLRLSRNQFNSIPSTAIT--TGLTALKELYLDANNISSISTAAFTGFPALTYLY 209

Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
           L   P+T    ++ + L  L +L L   Q+S      F+ + +L  L+L  N+I+     
Sbjct: 210 LADNPITDIPANTFADLTELRHLYLRNNQISSVSATAFAGLSALNYLDLSMNKISSLSAS 269

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
              GLT L  L L S  +      + T L  L+ L LS  Q            TNL +  
Sbjct: 270 VFTGLTALSILYLQSNQLSSIPASSFTDLAALQHLYLSSNQ-----------FTNLPAA- 317

Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
            +FT           GL +L  L L    +T    +ALTSL+ L +LDL   +IT   A 
Sbjct: 318 -AFT-----------GLDALIVLWLSGNPLTSVPTSALTSLSALRNLDLSSTKITSISAN 365

Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
                  L  L +    +          L++LT L+LS N  LT     L  GL
Sbjct: 366 AFAGLNALTVLALHYNPIASISGSAFTGLTALTALHLS-NTPLTTLPPGLFQGL 418



 Score = 38.5 bits (88), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 15/180 (8%)

Query: 283 LDSCGIGDEGLVNLTG---LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
           +D+CG G  G+ + +G   +CN + L    + +  S   HLS  +N          I+  
Sbjct: 26  VDACGTG--GVCDCSGTTVICNTESLTTIPSGI-PSNTTHLSLQSN---------QITSI 73

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
           S+    GL++L  L L   QIT     A T L+ LT+L L    I+   A        L+
Sbjct: 74  SVNAFTGLTALIWLYLTDNQITSISANAFTGLSALTYLVLKENEISSISANAFTGLSALK 133

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            +++    + D        L  ++ L LS+N   +  +  + +GLT L  L +  + I+S
Sbjct: 134 EVDLSNNRIIDLPTAAFAGLPQMSTLRLSRNQFNSIPSTAITTGLTALKELYLDANNISS 193


>gi|406833162|ref|ZP_11092756.1| hypothetical protein SpalD1_16026 [Schlesneria paludicola DSM
           18645]
          Length = 447

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 154/325 (47%), Gaps = 33/325 (10%)

Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI-AYLKGLQKL 206
           LV    L  L+ L I  C  + D  +  LSGL  L SL ++ S + DSG+   +K   +L
Sbjct: 100 LVLFGKLSDLKKLQIFNCRTLNDEMVAQLSGLKGLTSLALTNSVINDSGVETIVKSFPEL 159

Query: 207 TLLNLEG-CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
           T L+L     +T   +  +S LG L  L L + Q++D G ++ SK+  L+ L+L      
Sbjct: 160 TELDLSSNTNMTNGVVKIISNLGKLQRLTLVQNQINDIGAQRLSKLQELRSLDL------ 213

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
                  +G  N+E+        GD  L  + GL +L+  +   T V  SGL +LS    
Sbjct: 214 -------RG--NMEA--------GDMTLEVVAGLPHLQSFKHRSTAVNDSGLEYLSQGQA 256

Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFG-AR 383
           LES+ L    I+D S   LA LS L  L +   Q     G+ AL  + GL  L L     
Sbjct: 257 LESLLLQDFVITDQSGPHLAKLSKLSQLEIFRCQGFGSDGVLALKGM-GLIRLTLRDLPN 315

Query: 384 ITDSGAAYLRNFKNLRSL---EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
           + D       +   LR L   E+   G  DAG+KH+  L SL LL++     +TD+T+++
Sbjct: 316 VDDRAMEVFDDLPQLRRLYLHELTSVG--DAGLKHLAGLKSLELLDIWTVPQMTDETVDV 373

Query: 441 ISGLTGLVSLNVSNSRITSAGLRHL 465
           IS L  L  L++  + +T + +  L
Sbjct: 374 ISQLPNLKDLSIRVTGVTDSAIDKL 398



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 149/335 (44%), Gaps = 31/335 (9%)

Query: 66  GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
           GS++    L+     S+L+ L    C  ++D  +  L GL  LTSL+   N+ I   G++
Sbjct: 92  GSNLQSEDLVLFGKLSDLKKLQIFNCRTLNDEMVAQLSGLKGLTSLALT-NSVINDSGVE 150

Query: 126 AFA-GLINLVKLDLERCTRIHGGLVN-------------------------LKGLMKLES 159
                   L +LDL   T +  G+V                          L  L +L S
Sbjct: 151 TIVKSFPELTELDLSSNTNMTNGVVKIISNLGKLQRLTLVQNQINDIGAQRLSKLQELRS 210

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
           L+++      D  ++ ++GL +L+S +   + V DSG+ YL   Q L  L L+   +T  
Sbjct: 211 LDLRGNMEAGDMTLEVVAGLPHLQSFKHRSTAVNDSGLEYLSQGQALESLLLQDFVITDQ 270

Query: 220 CLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
               L+ L  L  L + RCQ    DG      +G +++       + D  +     L  L
Sbjct: 271 SGPHLAKLSKLSQLEIFRCQGFGSDGVLALKGMGLIRLTLRDLPNVDDRAMEVFDDLPQL 330

Query: 279 ESLNLDS-CGIGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSGLTNLESINLSFTGI 336
             L L     +GD GL +L GL +L+ L++ +  Q+    +  +S L NL+ +++  TG+
Sbjct: 331 RRLYLHELTSVGDAGLKHLAGLKSLELLDIWTVPQMTDETVDVISQLPNLKDLSIRVTGV 390

Query: 337 SDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTS 370
           +D ++ KL  + SL+SL       IT  GL  L++
Sbjct: 391 TDSAIDKLLTMKSLQSLTFKENGSITAEGLKKLSA 425



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 89/188 (47%), Gaps = 8/188 (4%)

Query: 43  GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
            VND  ++ + SQG +L S+ L    +TD    HL   S L  L+   C      G+  L
Sbjct: 242 AVNDSGLEYL-SQGQALESLLLQDFVITDQSGPHLAKLSKLSQLEIFRCQGFGSDGVLAL 300

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLN 161
           +G+  L  L+ R    +  + M+ F  L  L +L L   T +   GL +L GL  LE L+
Sbjct: 301 KGM-GLIRLTLRDLPNVDDRAMEVFDDLPQLRRLYLHELTSVGDAGLKHLAGLKSLELLD 359

Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL---KGLQKLTLLNLEGCPVTA 218
           I     +TD  +  +S L NLK L I  + VTDS I  L   K LQ LT    E   +TA
Sbjct: 360 IWTVPQMTDETVDVISQLPNLKDLSIRVTGVTDSAIDKLLTMKSLQSLTF--KENGSITA 417

Query: 219 ACLDSLSA 226
             L  LSA
Sbjct: 418 EGLKKLSA 425



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 138/305 (45%), Gaps = 16/305 (5%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI--QISDGGLEH 101
           +ND  ++ I      L  +DLS +    +G++ +   SNL  L     +  QI+D G + 
Sbjct: 144 INDSGVETIVKSFPELTELDLSSNTNMTNGVVKI--ISNLGKLQRLTLVQNQINDIGAQR 201

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESL 160
           L  L  L SL  R N       ++  AGL +L      R T ++  GL  L     LESL
Sbjct: 202 LSKLQELRSLDLRGNMEAGDMTLEVVAGLPHLQSFK-HRSTAVNDSGLEYLSQGQALESL 260

Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK--GLQKLTLLNLEGCPVT 217
            ++    ITD     L+ L+ L  L+I  C      G+  LK  GL +LTL +L      
Sbjct: 261 LLQDF-VITDQSGPHLAKLSKLSQLEIFRCQGFGSDGVLALKGMGLIRLTLRDLPNVDDR 319

Query: 218 A-ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGL 275
           A    D L  L  L+   L    + D G +  + + SL++L++    ++TDE +  +  L
Sbjct: 320 AMEVFDDLPQLRRLYLHEL--TSVGDAGLKHLAGLKSLELLDIWTVPQMTDETVDVISQL 377

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFT 334
            NL+ L++   G+ D  +  L  + +L+ L   +   + + GL+ LS       ++L  +
Sbjct: 378 PNLKDLSIRVTGVTDSAIDKLLTMKSLQSLTFKENGSITAEGLKKLSA-RKWSKLDLGTS 436

Query: 335 GISDG 339
             SDG
Sbjct: 437 NQSDG 441



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 2/136 (1%)

Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLR 393
           ++D  + +L+GL  L SL L    I D+G+  +  S   LT LDL     +T+     + 
Sbjct: 120 LNDEMVAQLSGLKGLTSLALTNSVINDSGVETIVKSFPELTELDLSSNTNMTNGVVKIIS 179

Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
           N   L+ L +    + D G + +  L  L  L+L  N    D TLE+++GL  L S    
Sbjct: 180 NLGKLQRLTLVQNQINDIGAQRLSKLQELRSLDLRGNMEAGDMTLEVVAGLPHLQSFKHR 239

Query: 454 NSRITSAGLRHLNHAR 469
           ++ +  +GL +L+  +
Sbjct: 240 STAVNDSGLEYLSQGQ 255


>gi|430746592|ref|YP_007205721.1| WD40 repeat-containing protein [Singulisphaera acidiphila DSM
           18658]
 gi|430018312|gb|AGA30026.1| WD40 repeat-containing protein [Singulisphaera acidiphila DSM
           18658]
          Length = 830

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/193 (35%), Positives = 106/193 (54%), Gaps = 12/193 (6%)

Query: 279 ESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTGI 336
           + L +DS  GI D GL +L  L NL+ L +  T ++   GL HL+ L  L  +NLS +G+
Sbjct: 623 KDLRIDSEEGIDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNLS-SGL 681

Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
           SD ++ +LA L  LK L+LD   + D+G+AAL  +T LT L L   ++TD+G + L+   
Sbjct: 682 SDKAVARLAPLKELKRLSLDHTDLRDSGMAALKGMTTLTELSLDETKVTDAGLSALKGMV 741

Query: 397 NLRSL-----EICGGGLTDAGVKHIKDLSSLTLLNLSQ--NCNLTDKTLELISGLTGLVS 449
            +  L      + G GL  A +K +  L SL+ + ++Q     LTD  L  +  L  L  
Sbjct: 742 QMERLSLGNVSVRGPGL--ANLKGMSRLKSLSFVAVAQYKPSPLTDAGLVHLENLPALDF 799

Query: 450 LNVSNSRITSAGL 462
           LN+  + +T AG+
Sbjct: 800 LNLGETSVTDAGM 812



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 102/232 (43%), Gaps = 44/232 (18%)

Query: 168 ITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
           I D+ ++ L+ L NL+ L I   +++   G+A+L  L KLT LNL               
Sbjct: 633 IDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNLS-------------- 678

Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
                        LSD    + + +  LK L+L   ++ D  +  LKG+T L  L+LD  
Sbjct: 679 -----------SGLSDKAVARLAPLKELKRLSLDHTDLRDSGMAALKGMTTLTELSLDET 727

Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
            + D GL  L G+  ++ L L +  V   GL +L G++ L+S  LSF  ++         
Sbjct: 728 KVTDAGLSALKGMVQMERLSLGNVSVRGPGLANLKGMSRLKS--LSFVAVA--------- 776

Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
                        +TD GL  L +L  L  L+L    +TD+G A  R  K L
Sbjct: 777 -------QYKPSPLTDAGLVHLENLPALDFLNLGETSVTDAGMAAARKIKPL 821



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 90/186 (48%), Gaps = 9/186 (4%)

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMK 174
              I   G++  A L+NL  L + +  RI G GL +L  L KL  LN+   + ++D  + 
Sbjct: 630 EEGIDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNL--SSGLSDKAVA 687

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
            L+ L  LK L +  + + DSG+A LKG+  LT L+L+   VT A L +L  +  +  L+
Sbjct: 688 RLAPLKELKRLSLDHTDLRDSGMAALKGMTTLTELSLDETKVTDAGLSALKGMVQMERLS 747

Query: 235 LNRCQLSDDGCEKFSKIGSLK------VLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
           L    +   G      +  LK      V     + +TD  LVHL+ L  L+ LNL    +
Sbjct: 748 LGNVSVRGPGLANLKGMSRLKSLSFVAVAQYKPSPLTDAGLVHLENLPALDFLNLGETSV 807

Query: 289 GDEGLV 294
            D G+ 
Sbjct: 808 TDAGMA 813



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 9/192 (4%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           + D+GL HL    NL+ L  +   +I   GL HL  L  LT L+   ++ ++ + +   A
Sbjct: 633 IDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNL--SSGLSDKAVARLA 690

Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
            L  L +L L+       G+  LKG+  L  L++     +TD+ +  L G+  ++ L + 
Sbjct: 691 PLKELKRLSLDHTDLRDSGMAALKGMTTLTELSLDETK-VTDAGLSALKGMVQMERLSLG 749

Query: 189 CSKVTDSGIAYLKGLQKLTLLNL------EGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
              V   G+A LKG+ +L  L+       +  P+T A L  L  L +L +LNL    ++D
Sbjct: 750 NVSVRGPGLANLKGMSRLKSLSFVAVAQYKPSPLTDAGLVHLENLPALDFLNLGETSVTD 809

Query: 243 DGCEKFSKIGSL 254
            G     KI  L
Sbjct: 810 AGMAAARKIKPL 821



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 8/192 (4%)

Query: 240 LSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
           + D G E  +++ +L+ L++     I    L HL  L  L  LNL S G+ D+ +  L  
Sbjct: 633 IDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNL-SSGLSDKAVARLAP 691

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
           L  LK L L  T +  SG+  L G+T L  ++L  T ++D  L  L G+  ++ L+L   
Sbjct: 692 LKELKRLSLDHTDLRDSGMAALKGMTTLTELSLDETKVTDAGLSALKGMVQMERLSLGNV 751

Query: 359 QITDTGLAALTSLTGLTHLDLFG------ARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
            +   GLA L  ++ L  L          + +TD+G  +L N   L  L +    +TDAG
Sbjct: 752 SVRGPGLANLKGMSRLKSLSFVAVAQYKPSPLTDAGLVHLENLPALDFLNLGETSVTDAG 811

Query: 413 VKHIKDLSSLTL 424
           +   + +  L L
Sbjct: 812 MAAARKIKPLIL 823



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 7/147 (4%)

Query: 67  SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
           S ++D  +  L     L+ L  +    + D G+  L+G++ LT LS      +T  G+ A
Sbjct: 679 SGLSDKAVARLAPLKELKRLSLDHT-DLRDSGMAALKGMTTLTELSLDETK-VTDAGLSA 736

Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI-----KWCNCITDSDMKPLSGLTN 181
             G++ + +L L   +    GL NLKG+ +L+SL+         + +TD+ +  L  L  
Sbjct: 737 LKGMVQMERLSLGNVSVRGPGLANLKGMSRLKSLSFVAVAQYKPSPLTDAGLVHLENLPA 796

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTL 208
           L  L +  + VTD+G+A  + ++ L L
Sbjct: 797 LDFLNLGETSVTDAGMAAARKIKPLIL 823



 Score = 45.1 bits (105), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 4/118 (3%)

Query: 351 KSLNLDARQ-ITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGL 408
           K L +D+ + I D GL  L  L  L  L +   ARI   G A+L     L  L +  G L
Sbjct: 623 KDLRIDSEEGIDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNLSSG-L 681

Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
           +D  V  +  L  L  L+L  + +L D  +  + G+T L  L++  +++T AGL  L 
Sbjct: 682 SDKAVARLAPLKELKRLSL-DHTDLRDSGMAALKGMTTLTELSLDETKVTDAGLSALK 738


>gi|332030619|gb|EGI70307.1| F-box/LRR-repeat protein 14 [Acromyrmex echinatior]
          Length = 837

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 99/311 (31%), Positives = 157/311 (50%), Gaps = 63/311 (20%)

Query: 57  SSLLSVDLSG-SDVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLS 112
            +L +++LSG  ++TDSG+ +   ++  +L  L+ + C Q++D  L  + + L NL  L 
Sbjct: 502 PNLEALNLSGCYNITDSGITNAFCQEYPSLIELNLSLCKQVTDTSLSRIAQFLKNLEHLE 561

Query: 113 FRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL--------MKLESLNI 162
                 IT  G+   A GL  L +LDL  C  +   G+ +L GL        + LE L++
Sbjct: 562 LGGCCNITNTGLLLIAWGLKKLKRLDLRSCWHVSDLGIAHLAGLNRETADGNLALEHLSL 621

Query: 163 KWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
           + C  ++D  ++ +S GLT LKS+ +S C  +TDSG+ +L  +  L  LNL  C      
Sbjct: 622 QDCQRLSDEALRHVSLGLTTLKSINLSFCVCITDSGVKHLARMSSLRELNLRSC------ 675

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNL 278
            D++S +G + YL            E  S+I SL V    F ++I D+ LVH+ +GL NL
Sbjct: 676 -DNISDIG-MAYL-----------AEGGSRITSLDV---SFCDKIGDQALVHISQGLFNL 719

Query: 279 ESLNLDSCGIGDEGLVNLT------GLC----------------NLKCLELSD-TQVGSS 315
           +SL+L +C I DEG+  +       G C                NLKC++L   T++ +S
Sbjct: 720 KSLSLSACQISDEGICKIALETLNIGQCSRLTDRGLHTVAESMKNLKCIDLYGCTKITTS 779

Query: 316 GLRHLSGLTNL 326
           GL  +  L  L
Sbjct: 780 GLERIMKLPQL 790



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 183/368 (49%), Gaps = 49/368 (13%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNL--KGLMKLES 159
           RG+  +  LS RR  +          G+ NL  L+L  C  I   G+ N   +    L  
Sbjct: 480 RGVKKVQVLSLRRGLS------DVLKGVPNLEALNLSGCYNITDSGITNAFCQEYPSLIE 533

Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSG---IAYLKGLQKLTLLNLEGC 214
           LN+  C  +TD+ +  ++  L NL+ L++  C  +T++G   IA+  GL+KL  L+L  C
Sbjct: 534 LNLSLCKQVTDTSLSRIAQFLKNLEHLELGGCCNITNTGLLLIAW--GLKKLKRLDLRSC 591

Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE---ITDECLVH 271
                    +S LG      LNR + +D         G+L + +L   +   ++DE L H
Sbjct: 592 W-------HVSDLGIAHLAGLNR-ETAD---------GNLALEHLSLQDCQRLSDEALRH 634

Query: 272 LK-GLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLS-GLTNLE 327
           +  GLT L+S+NL  C  I D G+ +L  + +L+ L L S   +   G+ +L+ G + + 
Sbjct: 635 VSLGLTTLKSINLSFCVCITDSGVKHLARMSSLRELNLRSCDNISDIGMAYLAEGGSRIT 694

Query: 328 SINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARI 384
           S+++SF   I D +L  ++ GL +LKSL+L A QI+D G+  +     L  L++   +R+
Sbjct: 695 SLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQISDEGICKI----ALETLNIGQCSRL 750

Query: 385 TDSG-AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
           TD G      + KNL+ +++ G   +T +G++ I  L  L+  + SQ        + L  
Sbjct: 751 TDRGLHTVAESMKNLKCIDLYGCTKITTSGLERIMKLPQLSDDDSSQRSKDNFARMFLPQ 810

Query: 443 GLTGLVSL 450
            ++  +SL
Sbjct: 811 AVSPFLSL 818



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 99/218 (45%), Gaps = 50/218 (22%)

Query: 272 LKGLTNLESLNLDSC-GIGDEGLVN-----LTGLCNLK---CLELSDTQVGSSGLRHLSG 322
           LKG+ NLE+LNL  C  I D G+ N        L  L    C +++DT +     R    
Sbjct: 498 LKGVPNLEALNLSGCYNITDSGITNAFCQEYPSLIELNLSLCKQVTDTSLS----RIAQF 553

Query: 323 LTNLESI------NLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--- 372
           L NLE +      N++ TG+    L    GL  LK L+L +   ++D G+A L  L    
Sbjct: 554 LKNLEHLELGGCCNITNTGL----LLIAWGLKKLKRLDLRSCWHVSDLGIAHLAGLNRET 609

Query: 373 -----GLTHLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSS 421
                 L HL L    R++D    ++      L+S+     +C   +TD+GVKH+  +SS
Sbjct: 610 ADGNLALEHLSLQDCQRLSDEALRHVSLGLTTLKSINLSFCVC---ITDSGVKHLARMSS 666

Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
           L  LNL    N++D          G+  L    SRITS
Sbjct: 667 LRELNLRSCDNISD---------IGMAYLAEGGSRITS 695


>gi|13905232|gb|AAH06913.1| Fbx14l protein, partial [Mus musculus]
          Length = 327

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 169/317 (53%), Gaps = 48/317 (15%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 13  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 50

Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 51  LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 110

Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 111 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 170

Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 171 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 229

Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 230 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 289

Query: 452 VSN-SRITSAGLRHLNH 467
           +   +RIT  GL  +  
Sbjct: 290 LYGCTRITKRGLERITQ 306



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 99/311 (31%), Positives = 167/311 (53%), Gaps = 32/311 (10%)

Query: 81  SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLD 137
           +N++SL+ + C  ++D GL H  ++ + +L +L+      IT   +   A  +  L  L+
Sbjct: 17  ANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLE 76

Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQI 187
           L  C+ I   G L+   GL +L+SLN++ C  ++D  +  L+G+T         L+ L +
Sbjct: 77  LGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTL 136

Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
             C K+TD  + ++ +GL  L LLNL  C  ++ A L  LS +GSL  LNL  C  +SD 
Sbjct: 137 QDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDT 196

Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-- 297
           G    + +GSL++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+G+  +   
Sbjct: 197 GIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQ 255

Query: 298 --GLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
             GL  L   +C+ ++D  +      HLS LT ++      T I+   L ++  L  LK 
Sbjct: 256 MHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG--CTRITKRGLERITQLPCLKV 312

Query: 353 LNLDARQITDT 363
           LNL   Q+TD+
Sbjct: 313 LNLGLWQMTDS 323



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           +TD  L H+ +  + L+ L+ +FC  ISD GL HL  + +L SL+ R  + I+  G+   
Sbjct: 142 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 201

Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           A G + L  LD+  C ++    +    +GL  L+SL++  C+   D   + +  +  L++
Sbjct: 202 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 261

Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           L I  C ++TD G+  + + L +LT ++L GC                        +++ 
Sbjct: 262 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 298

Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
            G E+ +++  LKVLNLG  ++TD
Sbjct: 299 RGLERITQLPCLKVLNLGLWQMTD 322


>gi|195383050|ref|XP_002050239.1| GJ20310 [Drosophila virilis]
 gi|194145036|gb|EDW61432.1| GJ20310 [Drosophila virilis]
          Length = 542

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 188/371 (50%), Gaps = 62/371 (16%)

Query: 7   SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
           S  +FN LV  R + +V + + R  +L+DL LG                  +L S++LSG
Sbjct: 206 SPSLFNCLV-RRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 247

Query: 67  S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQ 122
             +V D  L H    D  NL++LD + C QI+D  L  + + L NL +L       IT  
Sbjct: 248 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNT 307

Query: 123 GMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCITDSD 172
           G+   A GL  L  L+L  C  I   G+ +L G         ++LE L ++ C  ++D  
Sbjct: 308 GLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEA 367

Query: 173 MKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           +  ++ GLT+LKS+ +S C  VTDSG+ +L  + KL  LNL  C       D++S +G  
Sbjct: 368 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDIGMA 420

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGI 288
           +        L++ G    S I SL V    F ++I+D+ L H+ +GL  L SL+L+ C I
Sbjct: 421 Y--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQCQI 465

Query: 289 GDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKL 344
            D+G++ +   L  L+ L +   +++   GL+ L+  L+NL++I+L   T +S   +  +
Sbjct: 466 TDQGMLKIAKSLHELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDII 525

Query: 345 AGLSSLKSLNL 355
             L  L+ LNL
Sbjct: 526 MKLPKLQKLNL 536



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 113/352 (32%), Positives = 174/352 (49%), Gaps = 58/352 (16%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
           RG+  +  LS RR+      G+ A      +G  N+  ++L      H   V+L  L   
Sbjct: 216 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLG-----HAFSVDLPNL--- 267

Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           ++L++  C  ITD+ +  ++  L NL++L++  C  +T++G+  +  GL+KL  LNL  C
Sbjct: 268 KTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNTGLLLIAWGLKKLRHLNLRSC 327

Query: 215 PVTA-------ACLDSLSALGSL--FYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
              +       A     +A G+L   YL L  CQ LSD+     ++ + SLK +NL F  
Sbjct: 328 WHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 387

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
            +TD  L HL  +  LE LNL SC  I D G+  LT               G SG     
Sbjct: 388 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTE--------------GGSG----- 428

Query: 322 GLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLD 378
               + S+++SF   ISD +L  +A GL  L+SL+L+  QITD G+  +  SL  L +L+
Sbjct: 429 ----INSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMLKIAKSLHELENLN 484

Query: 379 LFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
           +   +RITD G   L  +  NL+++++ G   L+  G+  I  L  L  LNL
Sbjct: 485 IGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 536



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 143/303 (47%), Gaps = 51/303 (16%)

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
           G+  L SLN+  C  + D ++       L NLK+L +S C ++TD+ +  + + L+ L  
Sbjct: 236 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLET 295

Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
           L L GC        L     L  L +LNL  C  +SD G      IG L     GF+  T
Sbjct: 296 LELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQG------IGHLA----GFSRET 345

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
            E            +L L+  G+ D             C  LSD  +G        GLT+
Sbjct: 346 AE-----------GNLQLEYLGLQD-------------CQRLSDEALGHIA----QGLTS 377

Query: 326 LESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FG 381
           L+SINLSF   ++D  L+ LA +  L+ LNL +   I+D G+A LT   +G+  LD+ F 
Sbjct: 378 LKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFC 437

Query: 382 ARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE 439
            +I+D    ++ +    LRSL +    +TD G+  I K L  L  LN+ Q   +TDK L+
Sbjct: 438 DKISDQALTHIAQGLYRLRSLSLNQCQITDQGMLKIAKSLHELENLNIGQCSRITDKGLQ 497

Query: 440 LIS 442
            ++
Sbjct: 498 TLA 500



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 33/219 (15%)

Query: 274 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 324
           G+  L SLNL  C       +G    V+L  L  L    C +++DT +G    +HL  L 
Sbjct: 236 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLKNLE 294

Query: 325 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLT----- 375
            LE     N++ TG+    L    GL  L+ LNL +   I+D G+  L   +  T     
Sbjct: 295 TLELGGCCNITNTGL----LLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNL 350

Query: 376 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 428
            L+  G     R++D    ++ +   +L+S  L  C   +TD+G+KH+  +  L  LNL 
Sbjct: 351 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 409

Query: 429 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL 465
              N++D  +  L  G +G+ SL+VS   +I+   L H+
Sbjct: 410 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHI 448


>gi|290991518|ref|XP_002678382.1| predicted protein [Naegleria gruberi]
 gi|284091994|gb|EFC45638.1| predicted protein [Naegleria gruberi]
          Length = 344

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 154/340 (45%), Gaps = 27/340 (7%)

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
           NN IT++G + F  L  L+KLD+       GG                    I D  MK 
Sbjct: 11  NNPITSKGAEYFTNLKQLIKLDI-------GGTE------------------IGDEGMKS 45

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQK-LTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           +  +  L  L++  +K+ D GI  L  L   LT L +    +      +L  L  L YL+
Sbjct: 46  IGKMKQLTKLEMCGNKIGDEGIKALSNLNSSLTHLCVRKNNIGQEGAKTLKHLTRLNYLD 105

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           + + +L + G ++ S++  L  L +  N I DE    +  +  L  L +    IGD G +
Sbjct: 106 IRKNKLGNQGAKEISELPQLTRLFICKNNIGDEGAKAIGEIQTLTQLVMSENPIGDGGAI 165

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
           +++ L +LK L +  T V + G++ +  +  L  +++    +    ++ +  L+ L  L 
Sbjct: 166 SVSQLRHLKTLCIQWTNVRTEGIKAICNMKQLTCLHIQSNKLGFDDIKPIGQLNQLTRLL 225

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
           +   QI D+G   ++ L  LT+L ++ + I   GA  L   KNL  L + G  + + G++
Sbjct: 226 ISDNQIGDSGAKIISELNQLTNLRIYDSNIGIEGAKSLSGMKNLTKLNLSGNKIGNKGLE 285

Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
            I  +  L  L++  +C + D+  + +  +  L  L + +
Sbjct: 286 AISGMLQLQKLSVI-HCEIGDEGAKYLLNMPNLRKLYIGD 324



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 151/363 (41%), Gaps = 55/363 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGL-SNLTSLSFR 114
             L+ +D+ G+++ D G+  +     L  L+   C  +I D G++ L  L S+LT L  R
Sbjct: 26  KQLIKLDIGGTEIGDEGMKSIGKMKQLTKLEM--CGNKIGDEGIKALSNLNSSLTHLCVR 83

Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
           +NN I  +G K    L  L  LD+ +                         N + +   K
Sbjct: 84  KNN-IGQEGAKTLKHLTRLNYLDIRK-------------------------NKLGNQGAK 117

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
            +S L  L  L I  + + D G   +  +Q LT L +   P+      S+S L  L  L 
Sbjct: 118 EISELPQLTRLFICKNNIGDEGAKAIGEIQTLTQLVMSENPIGDGGAISVSQLRHLKTLC 177

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           +    +  +G +    +  L  L++  N++  + +  +  L  L  L +    IGD G  
Sbjct: 178 IQWTNVRTEGIKAICNMKQLTCLHIQSNKLGFDDIKPIGQLNQLTRLLISDNQIGDSGAK 237

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
            ++ L  L  L + D+ +G  G + LSG+ NL  +NLS   I +  L  ++G+  L+ L+
Sbjct: 238 IISELNQLTNLRIYDSNIGIEGAKSLSGMKNLTKLNLSGNKIGNKGLEAISGMLQLQKLS 297

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
                                   +    I D GA YL N  NLR L I G  ++D  +K
Sbjct: 298 ------------------------VIHCEIGDEGAKYLLNMPNLRKLYI-GDDISDRIIK 332

Query: 415 HIK 417
            ++
Sbjct: 333 ELR 335



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 120/267 (44%), Gaps = 8/267 (2%)

Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
           + + T LN+   P+T+   +  + L  L  L++   ++ D+G +   K+  L  L +  N
Sbjct: 1   MTQFTELNVFNNPITSKGAEYFTNLKQLIKLDIGGTEIGDEGMKSIGKMKQLTKLEMCGN 60

Query: 263 EITDECLVHLKGLTNLES----LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
           +I DE    +K L+NL S    L +    IG EG   L  L  L  L++   ++G+ G +
Sbjct: 61  KIGDEG---IKALSNLNSSLTHLCVRKNNIGQEGAKTLKHLTRLNYLDIRKNKLGNQGAK 117

Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
            +S L  L  + +    I D   + +  + +L  L +    I D G  +++ L  L  L 
Sbjct: 118 EISELPQLTRLFICKNNIGDEGAKAIGEIQTLTQLVMSENPIGDGGAISVSQLRHLKTLC 177

Query: 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
           +    +   G   + N K L  L I    L    +K I  L+ LT L +S N  + D   
Sbjct: 178 IQWTNVRTEGIKAICNMKQLTCLHIQSNKLGFDDIKPIGQLNQLTRLLISDN-QIGDSGA 236

Query: 439 ELISGLTGLVSLNVSNSRITSAGLRHL 465
           ++IS L  L +L + +S I   G + L
Sbjct: 237 KIISELNQLTNLRIYDSNIGIEGAKSL 263



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 131/288 (45%), Gaps = 2/288 (0%)

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           +T    L +  + +T  G  Y   L++L  L++ G  +    + S+  +  L  L +   
Sbjct: 1   MTQFTELNVFNNPITSKGAEYFTNLKQLIKLDIGGTEIGDEGMKSIGKMKQLTKLEMCGN 60

Query: 239 QLSDDGCEKFSKIGS-LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
           ++ D+G +  S + S L  L +  N I  E    LK LT L  L++    +G++G   ++
Sbjct: 61  KIGDEGIKALSNLNSSLTHLCVRKNNIGQEGAKTLKHLTRLNYLDIRKNKLGNQGAKEIS 120

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
            L  L  L +    +G  G + +  +  L  + +S   I DG    ++ L  LK+L +  
Sbjct: 121 ELPQLTRLFICKNNIGDEGAKAIGEIQTLTQLVMSENPIGDGGAISVSQLRHLKTLCIQW 180

Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
             +   G+ A+ ++  LT L +   ++       +     L  L I    + D+G K I 
Sbjct: 181 TNVRTEGIKAICNMKQLTCLHIQSNKLGFDDIKPIGQLNQLTRLLISDNQIGDSGAKIIS 240

Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           +L+ LT L +  + N+  +  + +SG+  L  LN+S ++I + GL  +
Sbjct: 241 ELNQLTNLRIY-DSNIGIEGAKSLSGMKNLTKLNLSGNKIGNKGLEAI 287


>gi|326201424|ref|ZP_08191295.1| Dockerin type 1 [Clostridium papyrosolvens DSM 2782]
 gi|325988024|gb|EGD48849.1| Dockerin type 1 [Clostridium papyrosolvens DSM 2782]
          Length = 1098

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 139/483 (28%), Positives = 220/483 (45%), Gaps = 67/483 (13%)

Query: 10  IFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDV 69
           I  +L       +  +  F D  L+ +  G    +N    D++ +  SS+ S+     ++
Sbjct: 18  ILTQLFVHNAFADSDIVTFADPNLEAVVRG---AINKPTGDILKTDVSSITSIIAENKNI 74

Query: 70  TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
            +  L  ++  +NL  L  +   +ISD  +  L GL++L  L+  ++N      + A AG
Sbjct: 75  NN--LTGIECLTNLTMLSLSKN-KISD--VTPLAGLTSLKYLALYQSNI---SNINALAG 126

Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
           LINL  LDL   +     +  LK + KL  L + W N    +D+  LS LTNL+ LQ+ C
Sbjct: 127 LINLEYLDLGMNSV--SDISALKNMTKLTYLELSWNNI---TDISALSKLTNLQYLQLGC 181

Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
           +++ D  I+ +  L KL  L+L    ++   +  LS L +L YL+LN   +S+      +
Sbjct: 182 NRIVD--ISPISNLTKLKTLHLFYNRISD--ISGLSGLKTLTYLHLNSNNVSN--INPLN 235

Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELS 308
            +  L  L+LGFN+ITD  +  L  LT +  L+L    I +   L NLT L +LK LE +
Sbjct: 236 GLTMLSYLDLGFNKITD--ISALNKLTKITDLDLSYNKITNINVLSNLTSLNDLK-LENN 292

Query: 309 DTQVGSSGLRHLSGLT----NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT--D 362
                S     +S LT    NLE I+     ++     +L   S      ++A QIT  D
Sbjct: 293 PINNYSPITGIISKLTKKDFNLEPISFPDADLAKAVCHQLGKNSEDMIYKIEAPQITVLD 352

Query: 363 TGLAALTSLTGLTHL----DLFGA------------------------RITDSGAAYLRN 394
            G   + SL+G+  L    DL+ A                        +I+D     LRN
Sbjct: 353 AGNMEIKSLSGIEQLCNLKDLYLAGNELDNINPISALTSLEALNLEKNQISDLNV--LRN 410

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
             NL+ L +    ++D  +  + DLSSL  L+LS N     K L   S L  L  L++ +
Sbjct: 411 LHNLKYLILRDNKISD--ITPLSDLSSLKTLDLSYNSLTNTKNL---SKLVNLYELHLDD 465

Query: 455 SRI 457
           + I
Sbjct: 466 NEI 468



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 109/393 (27%), Positives = 184/393 (46%), Gaps = 43/393 (10%)

Query: 71  DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
           D G+  + D S L+++     +++S   +  +  LS LT+L + +   +    +   + +
Sbjct: 134 DLGMNSVSDISALKNMTKLTYLELSWNNITDISALSKLTNLQYLQ---LGCNRIVDISPI 190

Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
            NL KL  +     +  + ++ GL  L++L     N    S++ PL+GLT L  L +  +
Sbjct: 191 SNLTKL--KTLHLFYNRISDISGLSGLKTLTYLHLNSNNVSNINPLNGLTMLSYLDLGFN 248

Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
           K+TD  I+ L  L K+T L+L    +T   ++ LS L S     LN  +L ++    +S 
Sbjct: 249 KITD--ISALNKLTKITDLDLSYNKITN--INVLSNLTS-----LNDLKLENNPINNYSP 299

Query: 251 IGSL------KVLNLGFNEITD----ECLVHLKG------LTNLESLNLDSCGIGDEGLV 294
           I  +      K  NL      D    + + H  G      +  +E+  +     G+  + 
Sbjct: 300 ITGIISKLTKKDFNLEPISFPDADLAKAVCHQLGKNSEDMIYKIEAPQITVLDAGNMEIK 359

Query: 295 NLTG---LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
           +L+G   LCNLK L L+  ++    +  +S LT+LE++NL    ISD  L  L  L +LK
Sbjct: 360 SLSGIEQLCNLKDLYLAGNEL--DNINPISALTSLEALNLEKNQISD--LNVLRNLHNLK 415

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
            L L   +I+D  +  L+ L+ L  LDL    +T++    L    NL  L +    + D 
Sbjct: 416 YLILRDNKISD--ITPLSDLSSLKTLDLSYNSLTNTKN--LSKLVNLYELHLDDNEINDI 471

Query: 412 -GVKHIKDLSSLTL-LNLSQNCNLTDKTLELIS 442
            G+++I  L  LTL  N  Q+  L    L+LIS
Sbjct: 472 NGLQNITKLKILTLDKNQIQDVCLLKNKLDLIS 504


>gi|299067411|emb|CBJ38610.1| leucine-rich-repeat type III effector protein (GALA6) [Ralstonia
           solanacearum CMR15]
          Length = 620

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 121/413 (29%), Positives = 172/413 (41%), Gaps = 39/413 (9%)

Query: 83  LQSLDFNFCI--QISDGGLEHLRGLS----NLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
           L+ L+   C    IS  GL HL  +     NLT +       I  +G +  A   +LV L
Sbjct: 164 LEHLEIGRCTGSAISAEGLAHLAEMPLKSLNLTGIE------IGVEGARTLAASTSLVSL 217

Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
            L  C         L     ++SL++   N I     + L+    L SL +  +++ D G
Sbjct: 218 TLIGCGIGDRAAQALAASQSIKSLDLS-VNMIGRDGAQALAA-APLTSLNLYYNEIGDDG 275

Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
              L   + LT L+     +  A  ++L+    L  LNL    +   G    +   SL  
Sbjct: 276 AGALAASKTLTSLDASKNGIGNAGAEALAKNTVLRELNLAHNMIGTPGVRALAGNTSLTE 335

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
           L+LG N + D   + L G  +L SL +D   IG  G   L     L  L+LS   +G  G
Sbjct: 336 LDLGGNRLGDAGALELAGNRSLLSLKVDHNEIGGGGAQALARHATLTSLDLSYNAIGLWG 395

Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
              L   T L  +NLSF GI   S   LA   SL  L L+   I D G   L     LT 
Sbjct: 396 AGALGANTTLSVLNLSFCGIDSHSACALACNKSLAELYLNGNWIGDYGALELAKNRTLTL 455

Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD------------------------AG 412
           LDL    I ++GA  L   + L SL++ G G+ D                         G
Sbjct: 456 LDLSRNGIRNAGAEALGGNQALTSLKLAGNGIDDDGAAALARHPRLTTLDLSRNRIGAEG 515

Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
            +H+   ++L  L+LSQN  +     E +S  T L++LNVS++ I  AG R L
Sbjct: 516 ARHLAQSATLAELDLSQN-RIGPDGAEALSQSTALITLNVSHNAIGEAGARSL 567



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 150/336 (44%), Gaps = 3/336 (0%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           + L S++L  +++ D G   L     L SLD +    I + G E L   + L  L+   +
Sbjct: 259 APLTSLNLYYNEIGDDGAGALAASKTLTSLDASKN-GIGNAGAEALAKNTVLRELNLA-H 316

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N I   G++A AG  +L +LDL        G + L G   L SL +   N I     + L
Sbjct: 317 NMIGTPGVRALAGNTSLTELDLGGNRLGDAGALELAGNRSLLSLKVD-HNEIGGGGAQAL 375

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           +    L SL +S + +   G   L     L++LNL  C + +    +L+   SL  L LN
Sbjct: 376 ARHATLTSLDLSYNAIGLWGAGALGANTTLSVLNLSFCGIDSHSACALACNKSLAELYLN 435

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
              + D G  + +K  +L +L+L  N I +     L G   L SL L   GI D+G   L
Sbjct: 436 GNWIGDYGALELAKNRTLTLLDLSRNGIRNAGAEALGGNQALTSLKLAGNGIDDDGAAAL 495

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
                L  L+LS  ++G+ G RHL+    L  ++LS   I       L+  ++L +LN+ 
Sbjct: 496 ARHPRLTTLDLSRNRIGAEGARHLAQSATLAELDLSQNRIGPDGAEALSQSTALITLNVS 555

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
              I + G  +L     LT LD     I + GA  L
Sbjct: 556 HNAIGEAGARSLADSASLTSLDARRNGIGEDGAKVL 591



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 166/392 (42%), Gaps = 6/392 (1%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           +SL+S+ L G  + D     L    +++SLD +  +   DG        + LTSL+   N
Sbjct: 212 TSLVSLTLIGCGIGDRAAQALAASQSIKSLDLSVNMIGRDGA--QALAAAPLTSLNLYYN 269

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             I   G  A A    L  LD  +    + G   L     L  LN+   N I    ++ L
Sbjct: 270 E-IGDDGAGALAASKTLTSLDASKNGIGNAGAEALAKNTVLRELNLA-HNMIGTPGVRAL 327

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           +G T+L  L +  +++ D+G   L G + L  L ++   +      +L+   +L  L+L+
Sbjct: 328 AGNTSLTELDLGGNRLGDAGALELAGNRSLLSLKVDHNEIGGGGAQALARHATLTSLDLS 387

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
              +   G        +L VLNL F  I       L    +L  L L+   IGD G + L
Sbjct: 388 YNAIGLWGAGALGANTTLSVLNLSFCGIDSHSACALACNKSLAELYLNGNWIGDYGALEL 447

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
                L  L+LS   + ++G   L G   L S+ L+  GI D     LA    L +L+L 
Sbjct: 448 AKNRTLTLLDLSRNGIRNAGAEALGGNQALTSLKLAGNGIDDDGAAALARHPRLTTLDLS 507

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
             +I   G   L     L  LDL   RI   GA  L     L +L +    + +AG + +
Sbjct: 508 RNRIGAEGARHLAQSATLAELDLSQNRIGPDGAEALSQSTALITLNVSHNAIGEAGARSL 567

Query: 417 KDLSSLTLLNLSQNCNLTD--KTLELISGLTG 446
            D +SLT L+  +N    D  K LE  + LTG
Sbjct: 568 ADSASLTSLDARRNGIGEDGAKVLEANTRLTG 599


>gi|290998998|ref|XP_002682067.1| predicted protein [Naegleria gruberi]
 gi|284095693|gb|EFC49323.1| predicted protein [Naegleria gruberi]
          Length = 427

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 151/340 (44%), Gaps = 40/340 (11%)

Query: 92  IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTRIHGGLV 149
           ++I + G++ +  L  L SL    +  + +  +     +  L +LD+ R  C R +GG  
Sbjct: 114 LKIGEDGIKAISQLKQLKSLYLYAD--VDSNALNGVFEMTQLTELDINRKQCHRWNGGFK 171

Query: 150 NLKGLMKLESLNIKWCNCITDSDM-KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
            LK L  L+ L    C CI   D+ + +S L  L  L I+ + +   G   +  L+ LT+
Sbjct: 172 KLKQLTNLKKLCAVGC-CIDYEDVFQSISQLDQLTELHIASNSLYSDGAKLIGKLKNLTI 230

Query: 209 LNLEGCPVTAAC---LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
           L++  C V       L+S+S L +L YL+     L   G    SK+ +L  L +  N I+
Sbjct: 231 LDISYCGVCIPHNEGLESISELINLTYLDCANNGLRSIG--PISKLENLTFLRVSLNRIS 288

Query: 266 --DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
             DE +V LK LTNL+                           +    +        S +
Sbjct: 289 SLDESIVKLKKLTNLD---------------------------VGYNSISDQSAEVFSSM 321

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
             L S+ +    I D S + ++ +S LK+L +D+  ++D G  +++++  LT LD+    
Sbjct: 322 KQLTSLFIQENNIGDKSAKSISEISQLKNLCIDSNIVSDKGAKSISTMENLTELDIRNND 381

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
           I D GA  L     L++L I    +++ G+  +K L   T
Sbjct: 382 IGDDGAKSLTRLTKLKTLRIAQNNISEEGMMTLKKLKYST 421



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 145/317 (45%), Gaps = 25/317 (7%)

Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG---LTNLK 183
           FA +  L KLD+        G+  +  L +L+SL +       D D   L+G   +T L 
Sbjct: 100 FAKMSQLTKLDISGLKIGEDGIKAISQLKQLKSLYL-----YADVDSNALNGVFEMTQLT 154

Query: 184 SLQIS---CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-CLDSLSALGSLFYLNLNRCQ 239
            L I+   C +  + G   LK L  L  L   GC +       S+S L  L  L++    
Sbjct: 155 ELDINRKQCHR-WNGGFKKLKQLTNLKKLCAVGCCIDYEDVFQSISQLDQLTELHIASNS 213

Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL-ESLNLDSCGIGDEGLVNL-- 296
           L  DG +   K+ +L +L++ +  +   C+ H +GL ++ E +NL      + GL ++  
Sbjct: 214 LYSDGAKLIGKLKNLTILDISYCGV---CIPHNEGLESISELINLTYLDCANNGLRSIGP 270

Query: 297 -TGLCNLKCLELSDTQVGS--SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
            + L NL  L +S  ++ S    +  L  LTNL+   + +  ISD S    + +  L SL
Sbjct: 271 ISKLENLTFLRVSLNRISSLDESIVKLKKLTNLD---VGYNSISDQSAEVFSSMKQLTSL 327

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
            +    I D    +++ ++ L +L +    ++D GA  +   +NL  L+I    + D G 
Sbjct: 328 FIQENNIGDKSAKSISEISQLKNLCIDSNIVSDKGAKSISTMENLTELDIRNNDIGDDGA 387

Query: 414 KHIKDLSSLTLLNLSQN 430
           K +  L+ L  L ++QN
Sbjct: 388 KSLTRLTKLKTLRIAQN 404


>gi|290994276|ref|XP_002679758.1| predicted protein [Naegleria gruberi]
 gi|284093376|gb|EFC47014.1| predicted protein [Naegleria gruberi]
          Length = 205

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 100/199 (50%)

Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
           +  L  LN++  +  D+  +  S++  L  L++  N I DE   +L  +  L SLN+   
Sbjct: 1   MKQLISLNISGNEFGDEEAKLISEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGEN 60

Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
            IGDEG   ++    L  L +  TQ+G    + +S +  L S+N+S   I     + ++ 
Sbjct: 61  EIGDEGAKLISETRQLASLNICFTQIGIEEAKLISEMRQLTSLNISDNRICVEGAKWISE 120

Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
           +  L SL++   +I D G   ++ +  LT LD+   RI D GA ++   K L SL I G 
Sbjct: 121 MRQLTSLDISGNRIGDEGAKTISEMKQLTSLDISYNRIGDEGAKFISEMKQLISLNIRGN 180

Query: 407 GLTDAGVKHIKDLSSLTLL 425
            + D GVK+I ++  LT L
Sbjct: 181 RIGDEGVKYISEMKQLTSL 199



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 97/194 (50%), Gaps = 1/194 (0%)

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
           LN+  NE  DE    +  +  L SL++    IGDEG   L+ +  L  L + + ++G  G
Sbjct: 7   LNISGNEFGDEEAKLISEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGENEIGDEG 66

Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
            + +S    L S+N+ FT I     + ++ +  L SLN+   +I   G   ++ +  LT 
Sbjct: 67  AKLISETRQLASLNICFTQIGIEEAKLISEMRQLTSLNISDNRICVEGAKWISEMRQLTS 126

Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
           LD+ G RI D GA  +   K L SL+I    + D G K I ++  L  LN+  N  + D+
Sbjct: 127 LDISGNRIGDEGAKTISEMKQLTSLDISYNRIGDEGAKFISEMKQLISLNIRGN-RIGDE 185

Query: 437 TLELISGLTGLVSL 450
            ++ IS +  L SL
Sbjct: 186 GVKYISEMKQLTSL 199



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 101/195 (51%), Gaps = 1/195 (0%)

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           +  L SLN+     GDE    ++ +  L  L++S  ++G  G ++LS +  L S+N+   
Sbjct: 1   MKQLISLNISGNEFGDEEAKLISEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGEN 60

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            I D   + ++    L SLN+   QI       ++ +  LT L++   RI   GA ++  
Sbjct: 61  EIGDEGAKLISETRQLASLNICFTQIGIEEAKLISEMRQLTSLNISDNRICVEGAKWISE 120

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
            + L SL+I G  + D G K I ++  LT L++S N  + D+  + IS +  L+SLN+  
Sbjct: 121 MRQLTSLDISGNRIGDEGAKTISEMKQLTSLDISYN-RIGDEGAKFISEMKQLISLNIRG 179

Query: 455 SRITSAGLRHLNHAR 469
           +RI   G+++++  +
Sbjct: 180 NRIGDEGVKYISEMK 194



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 99/203 (48%)

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           +  L SL IS ++  D     +  +++LT L++ G  +       LS +  L  LN+   
Sbjct: 1   MKQLISLNISGNEFGDEEAKLISEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGEN 60

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
           ++ D+G +  S+   L  LN+ F +I  E    +  +  L SLN+    I  EG   ++ 
Sbjct: 61  EIGDEGAKLISETRQLASLNICFTQIGIEEAKLISEMRQLTSLNISDNRICVEGAKWISE 120

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
           +  L  L++S  ++G  G + +S +  L S+++S+  I D   + ++ +  L SLN+   
Sbjct: 121 MRQLTSLDISGNRIGDEGAKTISEMKQLTSLDISYNRIGDEGAKFISEMKQLISLNIRGN 180

Query: 359 QITDTGLAALTSLTGLTHLDLFG 381
           +I D G+  ++ +  LT L   G
Sbjct: 181 RIGDEGVKYISEMKQLTSLTYKG 203



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 105/226 (46%), Gaps = 33/226 (14%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L+S+++SG++  D     + +   L SLD +   +I D G ++L  +  L SL+    N 
Sbjct: 4   LISLNISGNEFGDEEAKLISEMKQLTSLDISGN-RIGDEGAKYLSEMKQLISLNIGE-NE 61

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD---SDMKP 175
           I  +G K  +             TR            +L SLNI    C T     + K 
Sbjct: 62  IGDEGAKLIS------------ETR------------QLASLNI----CFTQIGIEEAKL 93

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           +S +  L SL IS +++   G  ++  +++LT L++ G  +      ++S +  L  L++
Sbjct: 94  ISEMRQLTSLNISDNRICVEGAKWISEMRQLTSLDISGNRIGDEGAKTISEMKQLTSLDI 153

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
           +  ++ D+G +  S++  L  LN+  N I DE + ++  +  L SL
Sbjct: 154 SYNRIGDEGAKFISEMKQLISLNIRGNRIGDEGVKYISEMKQLTSL 199



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 1/159 (0%)

Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
           G   L  + +L SLNI   N I D   K +S    L SL I  +++       +  +++L
Sbjct: 42  GAKYLSEMKQLISLNI-GENEIGDEGAKLISETRQLASLNICFTQIGIEEAKLISEMRQL 100

Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
           T LN+    +       +S +  L  L+++  ++ D+G +  S++  L  L++ +N I D
Sbjct: 101 TSLNISDNRICVEGAKWISEMRQLTSLDISGNRIGDEGAKTISEMKQLTSLDISYNRIGD 160

Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
           E    +  +  L SLN+    IGDEG+  ++ +  L  L
Sbjct: 161 EGAKFISEMKQLISLNIRGNRIGDEGVKYISEMKQLTSL 199



 Score = 46.2 bits (108), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 31/186 (16%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF----------------------NFC 91
           S+   L S+D+SG+ + D G  +L +   L SL+                       N C
Sbjct: 23  SEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGENEIGDEGAKLISETRQLASLNIC 82

Query: 92  I-QISDGGLEHLRGLS---NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
             QI   G+E  + +S    LTSL+   +N I  +G K  + +  L  LD+        G
Sbjct: 83  FTQI---GIEEAKLISEMRQLTSLNI-SDNRICVEGAKWISEMRQLTSLDISGNRIGDEG 138

Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
              +  + +L SL+I + N I D   K +S +  L SL I  +++ D G+ Y+  +++LT
Sbjct: 139 AKTISEMKQLTSLDISY-NRIGDEGAKFISEMKQLISLNIRGNRIGDEGVKYISEMKQLT 197

Query: 208 LLNLEG 213
            L  +G
Sbjct: 198 SLTYKG 203


>gi|290993148|ref|XP_002679195.1| predicted protein [Naegleria gruberi]
 gi|284092811|gb|EFC46451.1| predicted protein [Naegleria gruberi]
          Length = 311

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 1/177 (0%)

Query: 247 KF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
           KF S++  L  L++  NEI +    H+  +  L SLN+ +  IGDEG   ++ +  L  L
Sbjct: 124 KFISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRIGDEGAKFISEMQQLTLL 183

Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
           ++SD  +G  G++ +S +  L S N+S   I +   + ++ +  L SL++    I D+G+
Sbjct: 184 DISDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQLTSLDVSDNHIGDSGV 243

Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
             ++ +  LT L++   R+ D GA  +   K LRSL I    L D GVK I ++  L
Sbjct: 244 KFISEMKQLTSLNIAINRVGDEGAKLISEMKQLRSLNISDNELGDEGVKFISEMKQL 300



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 97/179 (54%), Gaps = 1/179 (0%)

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
           E +  ++ +  L  L++SD ++G+ G +H+S +  L S+N+    I D   + ++ +  L
Sbjct: 121 ENIKFISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRIGDEGAKFISEMQQL 180

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
             L++    I D G+  ++ +  LT  ++    I + GA  +   + L SL++    + D
Sbjct: 181 TLLDISDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQLTSLDVSDNHIGD 240

Query: 411 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           +GVK I ++  LT LN++ N  + D+  +LIS +  L SLN+S++ +   G++ ++  +
Sbjct: 241 SGVKFISEMKQLTSLNIAIN-RVGDEGAKLISEMKQLRSLNISDNELGDEGVKFISEMK 298



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 102/197 (51%), Gaps = 4/197 (2%)

Query: 256 VLNLGFNEITDECLVHLKGLTNLE---SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
           ++N+ FNE+  E   ++K ++ ++   SL++    IG+ G  +++ +  L  L + + ++
Sbjct: 107 IVNVKFNEMLLELRENIKFISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRI 166

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
           G  G + +S +  L  +++S   I D  ++ ++ +  L S N+    I + G  +++ + 
Sbjct: 167 GDEGAKFISEMQQLTLLDISDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQ 226

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
            LT LD+    I DSG  ++   K L SL I    + D G K I ++  L  LN+S N  
Sbjct: 227 QLTSLDVSDNHIGDSGVKFISEMKQLTSLNIAINRVGDEGAKLISEMKQLRSLNISDN-E 285

Query: 433 LTDKTLELISGLTGLVS 449
           L D+ ++ IS +  L S
Sbjct: 286 LGDEGVKFISEMKQLRS 302



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 94/180 (52%)

Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
             I ++  +++LT L++    +       +S +  L  LN+   ++ D+G +  S++  L
Sbjct: 121 ENIKFISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRIGDEGAKFISEMQQL 180

Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
            +L++  N I D+ +  +  +  L S N+    IG+ G  +++ +  L  L++SD  +G 
Sbjct: 181 TLLDISDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQLTSLDVSDNHIGD 240

Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
           SG++ +S +  L S+N++   + D   + ++ +  L+SLN+   ++ D G+  ++ +  L
Sbjct: 241 SGVKFISEMKQLTSLNIAINRVGDEGAKLISEMKQLRSLNISDNELGDEGVKFISEMKQL 300



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 80/155 (51%)

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           K +S +  L SL I  +++ D G  ++  +Q+LTLL++    +    +  +S +  L   
Sbjct: 148 KHISEMKQLTSLNICNNRIGDEGAKFISEMQQLTLLDISDNHIGDKGVKFISEMKQLTSF 207

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           N++   + + G +  S++  L  L++  N I D  +  +  +  L SLN+    +GDEG 
Sbjct: 208 NISDDLIGNVGAKSISEMQQLTSLDVSDNHIGDSGVKFISEMKQLTSLNIAINRVGDEGA 267

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
             ++ +  L+ L +SD ++G  G++ +S +  L S
Sbjct: 268 KLISEMKQLRSLNISDNELGDEGVKFISEMKQLRS 302



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 2/163 (1%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           +I + G +H+  +  LTSL+   NN I  +G K  + +  L  LD+        G+  + 
Sbjct: 141 EIGNVGAKHISEMKQLTSLNIC-NNRIGDEGAKFISEMQQLTLLDISDNHIGDKGVKFIS 199

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
            + +L S NI   + I +   K +S +  L SL +S + + DSG+ ++  +++LT LN+ 
Sbjct: 200 EMKQLTSFNIS-DDLIGNVGAKSISEMQQLTSLDVSDNHIGDSGVKFISEMKQLTSLNIA 258

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
              V       +S +  L  LN++  +L D+G +  S++  L+
Sbjct: 259 INRVGDEGAKLISEMKQLRSLNISDNELGDEGVKFISEMKQLR 301


>gi|148228501|ref|NP_001083845.1| F-box and leucine-rich repeat protein 14 [Xenopus laevis]
 gi|50603939|gb|AAH77430.1| Fbl13 protein [Xenopus laevis]
          Length = 400

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 112/359 (31%), Positives = 183/359 (50%), Gaps = 54/359 (15%)

Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKV 192
            KL L R        +  +G+ K++ L+++       S    + GL N++SL +S C  +
Sbjct: 50  AKLHLRRANPSLFPSLQARGIRKVQILSLR------RSLSYVIQGLPNIESLNLSGCYNL 103

Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSK- 250
           TD+G+ +                        +  +GSL  LNL+ C Q++D    + ++ 
Sbjct: 104 TDNGLGH----------------------AFVQEIGSLRTLNLSLCKQVTDSSLGRIAQY 141

Query: 251 IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLC------- 300
           +  L+VL LG    IT+  L+ +  GL  L+SLNL SC  + D G+ +L G+        
Sbjct: 142 LKGLQVLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGC 201

Query: 301 -NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 356
            +L+ L L D Q +    L+H+S GL  L  +NLSF G ISD  L  L+ +  L+SLNL 
Sbjct: 202 LSLEQLTLQDCQKLTDLALKHISRGLQGLRVLNLSFCGGISDAGLLHLSHMGGLRSLNLR 261

Query: 357 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 411
           +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +    L+SL +C   ++D 
Sbjct: 262 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLYGLKSLSLCSCHISDD 320

Query: 412 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLNH 467
           G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  +++   +RIT  GL  +  
Sbjct: 321 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKKGLERITQ 379



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 166/311 (53%), Gaps = 32/311 (10%)

Query: 81  SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLD 137
            N++SL+ + C  ++D GL H  ++ + +L +L+      +T   +   A  +  L  L+
Sbjct: 90  PNIESLNLSGCYNLTDNGLGHAFVQEIGSLRTLNLSLCKQVTDSSLGRIAQYLKGLQVLE 149

Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLKSLQI 187
           L  CT I   G L+   GL  L+SLN++ C  ++D  +  L+G+T        +L+ L +
Sbjct: 150 LGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLSLEQLTL 209

Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDD 243
             C K+TD  + ++ +GLQ L +LNL  C  ++ A L  LS +G L  LNL  C  +SD 
Sbjct: 210 QDCQKLTDLALKHISRGLQGLRVLNLSFCGGISDAGLLHLSHMGGLRSLNLRSCDNISDT 269

Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL----VN 295
           G    + +GSL++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+G+      
Sbjct: 270 GIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLYGLKSLSLCSCHISDDGINRMVRQ 328

Query: 296 LTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
           + GL  L   +C+ ++D  +      HLS LT ++      T I+   L ++  L  LK 
Sbjct: 329 MHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKKGLERITQLPCLKV 385

Query: 353 LNLDARQITDT 363
           LNL   Q+T++
Sbjct: 386 LNLGLWQMTES 396



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 154/306 (50%), Gaps = 32/306 (10%)

Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
           ++GL  +ESLN+  C  +TD+ +    +  + +L++L +S C +VTDS +     YLKGL
Sbjct: 86  IQGLPNIESLNLSGCYNLTDNGLGHAFVQEIGSLRTLNLSLCKQVTDSSLGRIAQYLKGL 145

Query: 204 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQLSDD-------GCEKFSKIGSL 254
           Q   +L L GC        L     L  L  LNL  C+   D       G  + +  G L
Sbjct: 146 Q---VLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCL 202

Query: 255 KVLNLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-S 308
            +  L   +   +TD  L H+ +GL  L  LNL  C GI D GL++L+ +  L+ L L S
Sbjct: 203 SLEQLTLQDCQKLTDLALKHISRGLQGLRVLNLSFCGGISDAGLLHLSHMGGLRSLNLRS 262

Query: 309 DTQVGSSGLRHLS-GLTNLESINLSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGL 365
              +  +G+ HL+ G   L  +++SF   + D SL  +A GL  LKSL+L +  I+D G+
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLYGLKSLSLCSCHISDDGI 322

Query: 366 AALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSS 421
             +   + GL  L++    RITD G   +  +   L  +++ G   +T  G++ I  L  
Sbjct: 323 NRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKKGLERITQLPC 382

Query: 422 LTLLNL 427
           L +LNL
Sbjct: 383 LKVLNL 388



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 142/286 (49%), Gaps = 33/286 (11%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
           V D  +  IA     L  ++L G +++T++GL+ +      L+SL+   C  +SD G+ H
Sbjct: 130 VTDSSLGRIAQYLKGLQVLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGH 189

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
           L G++                   A  G ++L +L L+ C ++    L ++ +GL  L  
Sbjct: 190 LAGMTR-----------------SAAEGCLSLEQLTLQDCQKLTDLALKHISRGLQGLRV 232

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
           LN+ +C  I+D+ +  LS +  L+SL + SC  ++D+GI +L  G  +L+ L++  C   
Sbjct: 233 LNLSFCGGISDAGLLHLSHMGGLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKV 292

Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVH 271
                SL+ +    Y    L+L  C +SDDG  +  + +  L+ LN+G    ITD+ L  
Sbjct: 293 GD--QSLAYIAQGLYGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLEL 350

Query: 272 L-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 315
           + + L+ L  ++L  C  I  +GL  +T L  LK L L   Q+  S
Sbjct: 351 IAEHLSQLTGIDLYGCTRITKKGLERITQLPCLKVLNLGLWQMTES 396


>gi|417399805|gb|JAA46888.1| Putative f-box/lrr-repeat protein 14 [Desmodus rotundus]
          Length = 368

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 170/315 (53%), Gaps = 32/315 (10%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
           ++  +N++SL+ + C  ++D GL H  ++ +S+L +L+      IT   +   A  +  L
Sbjct: 54  IQGMANIESLNLSGCYNLTDNGLGHAFVQEISSLRALNLSLCKQITDSSLGRIAQYLKGL 113

Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
             L+L  C+ I   G L+   GL +L+SLN++ C  ++D  +  L+G+T         L+
Sbjct: 114 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 173

Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
            L +  C K+TD  + ++ +GL  L LLNL  C  ++ A L  LS +GSL  LNL  C  
Sbjct: 174 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 233

Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
           +SD G    + +GSL++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+G+  
Sbjct: 234 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 292

Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
               + GL  L   +C+ ++D  +      HLS LT ++      T I+   L ++  L 
Sbjct: 293 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG--CTRITKRGLERITQLP 349

Query: 349 SLKSLNLDARQITDT 363
            LK LNL   Q+TD+
Sbjct: 350 CLKVLNLGLWQMTDS 364



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 104/318 (32%), Positives = 168/318 (52%), Gaps = 50/318 (15%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           + G+ N++SL +S C  +TD+G+  A+++ +  L  LNL  C                  
Sbjct: 54  IQGMANIESLNLSGCYNLTDNGLGHAFVQEISSLRALNLSLCK----------------- 96

Query: 233 LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GI 288
                 Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  +
Sbjct: 97  ------QITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHL 150

Query: 289 GDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-IS 337
            D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G IS
Sbjct: 151 SDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGIS 210

Query: 338 DGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL- 392
           D  L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ 
Sbjct: 211 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIA 269

Query: 393 RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSL 450
           +    L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  +
Sbjct: 270 QGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGI 329

Query: 451 NVSN-SRITSAGLRHLNH 467
           ++   +RIT  GL  +  
Sbjct: 330 DLYGCTRITKRGLERITQ 347



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 107/337 (31%), Positives = 171/337 (50%), Gaps = 36/337 (10%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
           RG+  +  LS RR+ +   QGM       N+  L+L  C  +     G   ++ +  L +
Sbjct: 36  RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEISSLRA 89

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           LN+  C  ITDS +  ++    LK L++     CS +T++G+  +  GLQ+L  LNL  C
Sbjct: 90  LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 147

Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
              +       A +   +A G   L  L L  CQ L+D   +  S+ +  L++LNL F  
Sbjct: 148 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 207

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
            I+D  L+HL  + +L SLNL SC  I D G+++L  G   L  L++S   +VG   L +
Sbjct: 208 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 267

Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
           ++ GL  L+S++L    ISD  + R +  +  L++LN+    +ITD GL  +   L+ LT
Sbjct: 268 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 327

Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
            +DL+G  RIT  G   +     L+ L +    +TD+
Sbjct: 328 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 364



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           +TD  L H+ +  + L+ L+ +FC  ISD GL HL  + +L SL+ R  + I+  G+   
Sbjct: 183 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 242

Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           A G + L  LD+  C ++    +    +GL  L+SL++  C+   D   + +  +  L++
Sbjct: 243 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 302

Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           L I  C ++TD G+  + + L +LT ++L GC                        +++ 
Sbjct: 303 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 339

Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
            G E+ +++  LKVLNLG  ++TD
Sbjct: 340 RGLERITQLPCLKVLNLGLWQMTD 363


>gi|18568221|gb|AAL75965.1|AF467461_1 PpaA [Danio rerio]
          Length = 386

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 104/312 (33%), Positives = 162/312 (51%), Gaps = 32/312 (10%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
           RG+  +  LS RR+ +   QGM       N+  L+L  C  +     G   ++ +  L  
Sbjct: 63  RGIKKVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQDIPSLRI 116

Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC-P 215
           LN+  C  ITDS +  ++  L NL+ L +  CS +T++G+  +  GL  L  LNL  C  
Sbjct: 117 LNLSLCKQITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRH 176

Query: 216 VTAACLDSLSALG--------SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
           V+   +  L+ +         +L +L L  CQ L+D   +  SK +  LK LNL F   I
Sbjct: 177 VSDVGIGHLAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKGLNLSFCGGI 236

Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS 321
           +D  ++HL  +T L +LNL SC  I D G+++L+ G   L  L++S   +VG   L +++
Sbjct: 237 SDAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIA 296

Query: 322 -GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHL 377
            GL  L+S++L    ISD  + R +  +  LK+LN+    +ITD GL  +   LT LT +
Sbjct: 297 QGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGI 356

Query: 378 DLFG-ARITDSG 388
           DL+G  +IT  G
Sbjct: 357 DLYGCTKITKRG 368



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 168/315 (53%), Gaps = 48/315 (15%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           + G+ N++SL +S C  +TD+G+  A+++ +  L +LNL  C                  
Sbjct: 81  IQGMPNIESLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCK----------------- 123

Query: 233 LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GI 288
                 Q++D    + ++ + +L++L+LG  + IT+  L+ +  GL NL+SLNL SC  +
Sbjct: 124 ------QITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHV 177

Query: 289 GDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-IS 337
            D G+ +L G+          L+ L L D Q +    L+H+S GL  L+ +NLSF G IS
Sbjct: 178 SDVGIGHLAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKGLNLSFCGGIS 237

Query: 338 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALT-SLTGLTHLDL-FGARITDSGAAYL-R 393
           D  +  L+ ++ L +LNL +   I+DTG+  L+     L  LD+ F  ++ D   AY+ +
Sbjct: 238 DAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIAQ 297

Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  LT L  ++
Sbjct: 298 GLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGID 357

Query: 452 VSN-SRITSAGLRHL 465
           +   ++IT  GL  +
Sbjct: 358 LYGCTKITKRGLERI 372



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 102/320 (31%), Positives = 166/320 (51%), Gaps = 50/320 (15%)

Query: 61  SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           S++LSG  ++TD+GL H  ++D  +L+ L+ + C QI+D  L  +               
Sbjct: 89  SLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCKQITDSSLGRI--------------- 133

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
              AQ +K      NL  LDL  C+ I   G L+   GL  L+SLN++ C  ++D  +  
Sbjct: 134 ---AQYLK------NLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGH 184

Query: 176 LSGLTN--------LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSL 224
           L+G+T         L+ L +  C K+TD  + ++ KGL KL  LNL  C  ++ A +  L
Sbjct: 185 LAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKGLNLSFCGGISDAGMIHL 244

Query: 225 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 279
           S +  L+ LNL  C  +SD G    S +G+L++  L++ F +++ D+ L ++ +GL  L+
Sbjct: 245 SHMTQLWTLNLRSCDNISDTGIMHLS-MGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLK 303

Query: 280 SLNLDSCGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTG 335
           SL+L SC I D+G+  +   +  LK L +    ++   GL  ++  LT L  I+L   T 
Sbjct: 304 SLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTK 363

Query: 336 ISDGSLRKLAGLSSLKSLNL 355
           I+   L ++  L  LK  NL
Sbjct: 364 ITKRGLERITQLPCLKVFNL 383



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 137/278 (49%), Gaps = 33/278 (11%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
           + D  +  IA    +L  +DL G S++T++GL+ +     NL+SL+   C  +SD G+ H
Sbjct: 125 ITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGH 184

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
           L G++                   A  G + L  L L+ C ++    L ++ KGL KL+ 
Sbjct: 185 LAGMTR-----------------SAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKG 227

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
           LN+ +C  I+D+ M  LS +T L +L + SC  ++D+GI +L  G  +L  L++  C   
Sbjct: 228 LNLSFCGGISDAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKV 287

Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVH 271
                SL+ +    Y    L+L  C +SDDG  +  + +  LK LN+G    ITD+ L  
Sbjct: 288 GD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLEL 345

Query: 272 LK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL 307
           +   LT L  ++L  C  I   GL  +T L  LK   L
Sbjct: 346 IADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVFNL 383



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 153/303 (50%), Gaps = 26/303 (8%)

Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKL 206
           ++G+  +ESLN+  C  +TD+ +    +  + +L+ L +S C ++TDS +  + + L+ L
Sbjct: 81  IQGMPNIESLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCKQITDSSLGRIAQYLKNL 140

Query: 207 TLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQLSDD-------GCEKFSKIGSLKVL 257
            LL+L GC        L     L +L  LNL  C+   D       G  + +  G L + 
Sbjct: 141 ELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLTLE 200

Query: 258 NLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-SDTQ 311
           +L   +   +TD  L H+ KGL  L+ LNL  C GI D G+++L+ +  L  L L S   
Sbjct: 201 HLTLQDCQKLTDLSLKHISKGLNKLKGLNLSFCGGISDAGMIHLSHMTQLWTLNLRSCDN 260

Query: 312 VGSSGLRHLS-GLTNLESINLSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAAL 368
           +  +G+ HLS G   L  +++SF   + D SL  +A GL  LKSL+L +  I+D G+  +
Sbjct: 261 ISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRM 320

Query: 369 T-SLTGLTHLDLFG-ARITDSGAAYLR-NFKNLRSLEICG-GGLTDAGVKHIKDLSSLTL 424
              +  L  L++    RITD G   +  +   L  +++ G   +T  G++ I  L  L +
Sbjct: 321 VRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKV 380

Query: 425 LNL 427
            NL
Sbjct: 381 FNL 383


>gi|332661885|ref|YP_004451355.1| small GTP-binding protein [Haliscomenobacter hydrossis DSM 1100]
 gi|332337382|gb|AEE54482.1| small GTP-binding protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 1141

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 102/294 (34%), Positives = 153/294 (52%), Gaps = 26/294 (8%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           Q+SD     L  LS L++LSF  + + T     +    ++ +     R T     L +L+
Sbjct: 191 QVSD-----LDALSALSNLSF-LDLSFTQVSDLSGLSTLSNLSSLNLRDT-YSSDLRSLR 243

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
            L+ L  L +        SD+  L+ L NL SL +S ++V+D  ++ L  L  L+ L+L 
Sbjct: 244 PLINLSDLKLSSTEV---SDLSVLAHLHNLSSLHLSYTQVSD--LSALSALSNLSFLDLS 298

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
              V+   L +LSAL +L +LNL+  Q+SD        + +L +++L   E+TD  L  L
Sbjct: 299 DTQVSD--LSALSALYNLSFLNLSNTQISD--LSALRHLLNLSIIDLSSTELTD--LTTL 352

Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
           + L NL S+NL+     D  L  L+ L NL  L LSDTQ  +S L  LS L NL S+NLS
Sbjct: 353 RHLQNLNSINLNKTHASD--LSALSNLSNLSELYLSDTQ--ASDLSALSALFNLNSLNLS 408

Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
           +T +S   L  LA L +L SL+L   ++ D  L+ L +L  L+ LDL    + D
Sbjct: 409 YTQVS--GLSALANLQNLSSLDLGDTEVFD--LSPLANLQNLSSLDLSDTEVVD 458



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 102/304 (33%), Positives = 145/304 (47%), Gaps = 46/304 (15%)

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT-------------- 217
           D+ PLS L  LK + +S +++ +  +  L  L  L+ L+L    VT              
Sbjct: 128 DLYPLSNLIYLKHINLSRTRLPN--LVTLGHLSNLSFLDLSYTQVTDLSDLSTLSNLNSL 185

Query: 218 ------AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
                  + LD+LSAL +L +L+L+  Q+SD          S   L   ++      L  
Sbjct: 186 NLSDTQVSDLDALSALSNLSFLDLSFTQVSDLSGLSTLSNLSSLNLRDTYSS----DLRS 241

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
           L+ L NL  L L S  + D  L  L  L NL  L LS TQV  S L  LS L+NL  ++L
Sbjct: 242 LRPLINLSDLKLSSTEVSD--LSVLAHLHNLSSLHLSYTQV--SDLSALSALSNLSFLDL 297

Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
           S T +SD  L  L+ L +L  LNL   QI+D  L+AL  L  L+ +DL    +TD     
Sbjct: 298 SDTQVSD--LSALSALYNLSFLNLSNTQISD--LSALRHLLNLSIIDLSSTELTDLTT-- 351

Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT-LLNLSQNCNLTDKTLELISGLTGLVSL 450
           LR+ +NL S+ +           H  DLS+L+ L NLS+   L+D     +S L+ L +L
Sbjct: 352 LRHLQNLNSINL--------NKTHASDLSALSNLSNLSE-LYLSDTQASDLSALSALFNL 402

Query: 451 NVSN 454
           N  N
Sbjct: 403 NSLN 406



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 111/365 (30%), Positives = 165/365 (45%), Gaps = 79/365 (21%)

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD------------- 170
           +   + LI L  ++L R TR+   LV L  L  L  L++ +   +TD             
Sbjct: 129 LYPLSNLIYLKHINLSR-TRL-PNLVTLGHLSNLSFLDLSYTQ-VTDLSDLSTLSNLNSL 185

Query: 171 -------SDMKPLSGLTNLKSLQISCSKVTD--------------------SGIAYLKGL 203
                  SD+  LS L+NL  L +S ++V+D                    S +  L+ L
Sbjct: 186 NLSDTQVSDLDALSALSNLSFLDLSFTQVSDLSGLSTLSNLSSLNLRDTYSSDLRSLRPL 245

Query: 204 QKLTLLNLEGCPVT--------------------AACLDSLSALGSLFYLNLNRCQLSDD 243
             L+ L L    V+                     + L +LSAL +L +L+L+  Q+SD 
Sbjct: 246 INLSDLKLSSTEVSDLSVLAHLHNLSSLHLSYTQVSDLSALSALSNLSFLDLSDTQVSD- 304

Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
                S + +L  LNL   +I+D  L  L+ L NL  ++L S  + D  L  L  L NL 
Sbjct: 305 -LSALSALYNLSFLNLSNTQISD--LSALRHLLNLSIIDLSSTELTD--LTTLRHLQNLN 359

Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
            + L+ T   +S L  LS L+NL  + LS T  SD  L  L+ L +L SLNL   Q+  +
Sbjct: 360 SINLNKTH--ASDLSALSNLSNLSELYLSDTQASD--LSALSALFNLNSLNLSYTQV--S 413

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
           GL+AL +L  L+ LDL    + D     L N +NL SL++    + D  +  + +LS L 
Sbjct: 414 GLSALANLQNLSSLDLGDTEVFDLSP--LANLQNLSSLDLSDTEVVD--LSPMINLSKLK 469

Query: 424 LLNLS 428
            LNLS
Sbjct: 470 YLNLS 474


>gi|300704109|ref|YP_003745711.1| leucine-rich-repeat type III effector protein (gala5) [Ralstonia
           solanacearum CFBP2957]
 gi|299071772|emb|CBJ43096.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
           solanacearum CFBP2957]
          Length = 535

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 161/350 (46%), Gaps = 9/350 (2%)

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES------LNIKWCNCITDSDMKP 175
           QG+   AG+ +L +L L R   + G  + L G+ +L +      L++  C  I   + + 
Sbjct: 152 QGLITAAGIAHLSRLPLVRLN-LSGNRIGLAGVQRLANHPTLTELDVSRCG-IGPEEARA 209

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           L+    L +L  S + V   G+  L G + LT L+L    +  A    L +   L  LN+
Sbjct: 210 LAASARLTTLNASHNGVGSEGVQALVGCKTLTSLDLSDNGLGDAEAQRLGSSERLTTLNV 269

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           NR ++   G    +   +L  L++G N I D  +  L     L +LN++   IG  G+  
Sbjct: 270 NRNRIDVQGARALAACKTLTSLDIGGNSIGDAGVNALVANAQLTTLNVERAEIGAHGVQA 329

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           L     L  L + +  +G  G   L+  T+L +++    GI     + LA  + L +LNL
Sbjct: 330 LADCKTLTSLRIDNNNIGDEGANTLAASTSLTTLHSESNGIGPTGAQALAANTRLTTLNL 389

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
               I D G  A  + T L  L +    ++D+ A  L   K L +L+     + DAG + 
Sbjct: 390 GHNSIGDAGAQAWLANTTLVWLSVRRNGLSDACAIRLAASKTLTTLDASDNAIKDAGARA 449

Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           +    +LT LN+S N  + +     ++  T L SL++ N+R+  AG+R L
Sbjct: 450 LAANRTLTALNVSSN-EIGNAGARALAANTMLKSLDLRNNRMLEAGVRAL 498



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 174/390 (44%), Gaps = 32/390 (8%)

Query: 70  TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR----NNAITAQGMK 125
           TD+ L  L     L++LD + C +    GL    G+++L+ L   R     N I   G++
Sbjct: 128 TDADLAGLPPT--LKTLDLSRC-RGRGQGLITAAGIAHLSRLPLVRLNLSGNRIGLAGVQ 184

Query: 126 AFAGLINLVKLDLERC----------------TRIHG--------GLVNLKGLMKLESLN 161
             A    L +LD+ RC                T ++         G+  L G   L SL+
Sbjct: 185 RLANHPTLTELDVSRCGIGPEEARALAASARLTTLNASHNGVGSEGVQALVGCKTLTSLD 244

Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
           +   N + D++ + L     L +L ++ +++   G   L   + LT L++ G  +  A +
Sbjct: 245 LS-DNGLGDAEAQRLGSSERLTTLNVNRNRIDVQGARALAACKTLTSLDIGGNSIGDAGV 303

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
           ++L A   L  LN+ R ++   G +  +   +L  L +  N I DE    L   T+L +L
Sbjct: 304 NALVANAQLTTLNVERAEIGAHGVQALADCKTLTSLRIDNNNIGDEGANTLAASTSLTTL 363

Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
           + +S GIG  G   L     L  L L    +G +G +     T L  +++   G+SD   
Sbjct: 364 HSESNGIGPTGAQALAANTRLTTLNLGHNSIGDAGAQAWLANTTLVWLSVRRNGLSDACA 423

Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
            +LA   +L +L+     I D G  AL +   LT L++    I ++GA  L     L+SL
Sbjct: 424 IRLAASKTLTTLDASDNAIKDAGARALAANRTLTALNVSSNEIGNAGARALAANTMLKSL 483

Query: 402 EICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
           ++    + +AGV+ +    +L+ L +S NC
Sbjct: 484 DLRNNRMLEAGVRALLANRTLSSLGVSFNC 513



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 153/345 (44%), Gaps = 8/345 (2%)

Query: 127 FAGLINLVK-LDLERCTRIHGGLVNLKGLMKLESLNIKWCNC----ITDSDMKPLSGLTN 181
            AGL   +K LDL RC     GL+   G+  L  L +   N     I  + ++ L+    
Sbjct: 132 LAGLPPTLKTLDLSRCRGRGQGLITAAGIAHLSRLPLVRLNLSGNRIGLAGVQRLANHPT 191

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
           L  L +S   +       L    +LT LN     V +  + +L    +L  L+L+   L 
Sbjct: 192 LTELDVSRCGIGPEEARALAASARLTTLNASHNGVGSEGVQALVGCKTLTSLDLSDNGLG 251

Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
           D   ++      L  LN+  N I  +    L     L SL++    IGD G+  L     
Sbjct: 252 DAEAQRLGSSERLTTLNVNRNRIDVQGARALAACKTLTSLDIGGNSIGDAGVNALVANAQ 311

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
           L  L +   ++G+ G++ L+    L S+ +    I D     LA  +SL +L+ ++  I 
Sbjct: 312 LTTLNVERAEIGAHGVQALADCKTLTSLRIDNNNIGDEGANTLAASTSLTTLHSESNGIG 371

Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
            TG  AL + T LT L+L    I D+GA A+L N   L  L +   GL+DA    +    
Sbjct: 372 PTGAQALAANTRLTTLNLGHNSIGDAGAQAWLAN-TTLVWLSVRRNGLSDACAIRLAASK 430

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           +LT L+ S N  + D     ++    L +LNVS++ I +AG R L
Sbjct: 431 TLTTLDASDNA-IKDAGARALAANRTLTALNVSSNEIGNAGARAL 474



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 119/276 (43%), Gaps = 3/276 (1%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           +L S+DLS + + D+    L     L +L+ N   +I   G   L     LTSL     N
Sbjct: 239 TLTSLDLSDNGLGDAEAQRLGSSERLTTLNVNRN-RIDVQGARALAACKTLTSLDIG-GN 296

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
           +I   G+ A      L  L++ER      G+  L     L SL I   N I D     L+
Sbjct: 297 SIGDAGVNALVANAQLTTLNVERAEIGAHGVQALADCKTLTSLRID-NNNIGDEGANTLA 355

Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
             T+L +L    + +  +G   L    +LT LNL    +  A   +  A  +L +L++ R
Sbjct: 356 ASTSLTTLHSESNGIGPTGAQALAANTRLTTLNLGHNSIGDAGAQAWLANTTLVWLSVRR 415

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
             LSD    + +   +L  L+   N I D     L     L +LN+ S  IG+ G   L 
Sbjct: 416 NGLSDACAIRLAASKTLTTLDASDNAIKDAGARALAANRTLTALNVSSNEIGNAGARALA 475

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
               LK L+L + ++  +G+R L     L S+ +SF
Sbjct: 476 ANTMLKSLDLRNNRMLEAGVRALLANRTLSSLGVSF 511


>gi|327272147|ref|XP_003220847.1| PREDICTED: f-box/LRR-repeat protein 14-like [Anolis carolinensis]
          Length = 400

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 102/294 (34%), Positives = 161/294 (54%), Gaps = 26/294 (8%)

Query: 200 LKGLQKLTLLNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSL 254
           ++G+ ++  LNL GC  +T   L    ++ + SL  LNL+ C Q++D    + ++ +  L
Sbjct: 86  IQGMAEIESLNLSGCYNLTDNGLGHAFVAEISSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query: 255 KVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN--------LK 303
           + L LG  + IT+  L+ +  GL  L+SLNL SC  + D G+ +L G+          L+
Sbjct: 146 EALELGGCSNITNTGLLLVAWGLPRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205

Query: 304 CLELSDTQVGSS-GLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQ 359
            L L D Q  S   L+HLS GL+ L  +NLSF G ISD  L  L+ +S L+ LNL +   
Sbjct: 206 QLTLQDCQKLSDLSLKHLSRGLSRLRQLNLSFCGGISDAGLLHLSHMSCLRVLNLRSCDN 265

Query: 360 ITDTGLAAL-TSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KH 415
           I+DTG+  L T    L+ LD+ F  ++ D   AY+ +    LRSL +C   ++D G+ + 
Sbjct: 266 ISDTGIMHLATGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRM 325

Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLNH 467
           ++ +  L  LN+ Q   +TDK LELI+  L+ L  +++   +RIT  GL  +  
Sbjct: 326 VRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQ 379



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 164/327 (50%), Gaps = 32/327 (9%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
           RG+  +  LS RR+ +   QGM        +  L+L  C  +     G   +  +  L +
Sbjct: 68  RGIRRVQILSLRRSLSYVIQGMA------EIESLNLSGCYNLTDNGLGHAFVAEISSLRA 121

Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPV 216
           LN+  C  ITDS +  ++  L  L++L++  CS +T++G+  +  GL +L  LNL  C  
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKGLEALELGGCSNITNTGLLLVAWGLPRLKSLNLRSCRH 181

Query: 217 TA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
            +       A +   +A G   L  L L  CQ LSD   +  S+ +  L+ LNL F   I
Sbjct: 182 LSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLSDLSLKHLSRGLSRLRQLNLSFCGGI 241

Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL-TGLCNLKCLELSDT-QVGSSGLRHLS 321
           +D  L+HL  ++ L  LNL SC  I D G+++L TG   L  L++S   +VG   L +++
Sbjct: 242 SDAGLLHLSHMSCLRVLNLRSCDNISDTGIMHLATGSLRLSGLDVSFCDKVGDQSLAYIA 301

Query: 322 -GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHL 377
            GL  L S++L    ISD  + R +  +  L++LN+    +ITD GL  +   L+ LT +
Sbjct: 302 QGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGI 361

Query: 378 DLFG-ARITDSGAAYLRNFKNLRSLEI 403
           DL+G  RIT  G   +     L+ L +
Sbjct: 362 DLYGCTRITKRGLERITQLPCLKVLNL 388



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 103/331 (31%), Positives = 170/331 (51%), Gaps = 56/331 (16%)

Query: 61  SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           S++LSG  ++TD+GL H  + + S+L++L+ + C QI+D  L  +               
Sbjct: 94  SLNLSGCYNLTDNGLGHAFVAEISSLRALNLSLCKQITDSSLGRI--------------- 138

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
              AQ +K       L  L+L  C+ I   G L+   GL +L+SLN++ C  ++D  +  
Sbjct: 139 ---AQYLKG------LEALELGGCSNITNTGLLLVAWGLPRLKSLNLRSCRHLSDVGIGH 189

Query: 176 LSGLTN--------LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSL 224
           L+G+T         L+ L +  C K++D  + +L +GL +L  LNL  C  ++ A L  L
Sbjct: 190 LAGMTRSAAEGCLGLEQLTLQDCQKLSDLSLKHLSRGLSRLRQLNLSFCGGISDAGLLHL 249

Query: 225 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 279
           S +  L  LNL  C  +SD G    +  GSL++  L++ F +++ D+ L ++ +GL  L 
Sbjct: 250 SHMSCLRVLNLRSCDNISDTGIMHLAT-GSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLR 308

Query: 280 SLNLDSCGIGDEGL----VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLS 332
           SL+L SC I DEG+      + GL  L   +C+ ++D  +      HLS LT ++     
Sbjct: 309 SLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC- 366

Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
            T I+   L ++  L  LK LNL   Q+T++
Sbjct: 367 -TRITKRGLERITQLPCLKVLNLGLWQMTES 396


>gi|195121256|ref|XP_002005136.1| GI19235 [Drosophila mojavensis]
 gi|193910204|gb|EDW09071.1| GI19235 [Drosophila mojavensis]
          Length = 545

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 117/371 (31%), Positives = 188/371 (50%), Gaps = 62/371 (16%)

Query: 7   SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
           S  +FN LV  R + +V + + R  +L+DL +G                  +L S++LSG
Sbjct: 209 SPSLFNCLV-RRGIKKVQILSLRR-SLKDLVVGV----------------PALTSLNLSG 250

Query: 67  S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQ 122
             +V D  L H    D  NL++LD + C QI+D  L  + + L NL +L       IT  
Sbjct: 251 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNT 310

Query: 123 GMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCITDSD 172
           G+   A GL  L  L+L  C  I   G+ +L G         ++LE L ++ C  ++D  
Sbjct: 311 GLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEA 370

Query: 173 MKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           +  ++ GLT+LKS+ +S C  VTDSG+ +L  + KL  LNL  C       D++S +G  
Sbjct: 371 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDIGMA 423

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGI 288
           +        L++ G    S I SL V    F ++I+D+ L H+ +GL  L SL+L+ C I
Sbjct: 424 Y--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQCQI 468

Query: 289 GDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKL 344
            D+G++ +   L  L+ L +   +++   GL+ L+  L+NL++I+L   T +S   +  +
Sbjct: 469 TDQGMLKIAKSLHELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDII 528

Query: 345 AGLSSLKSLNL 355
             L  L+ LNL
Sbjct: 529 MKLPKLQKLNL 539



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 113/352 (32%), Positives = 174/352 (49%), Gaps = 58/352 (16%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
           RG+  +  LS RR+      G+ A      +G  N+  ++L      H   V+L  L   
Sbjct: 219 RGIKKVQILSLRRSLKDLVVGVPALTSLNLSGCFNVADMNLG-----HAFSVDLPNL--- 270

Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           ++L++  C  ITD+ +  ++  L NL++L++  C  +T++G+  +  GL+KL  LNL  C
Sbjct: 271 KTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNTGLLLIAWGLKKLRHLNLRSC 330

Query: 215 PVTA-------ACLDSLSALGSL--FYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
              +       A     +A G+L   YL L  CQ LSD+     ++ + SLK +NL F  
Sbjct: 331 WHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 390

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
            +TD  L HL  +  LE LNL SC  I D G+  LT               G SG     
Sbjct: 391 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTE--------------GGSG----- 431

Query: 322 GLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLD 378
               + S+++SF   ISD +L  +A GL  L+SL+L+  QITD G+  +  SL  L +L+
Sbjct: 432 ----INSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMLKIAKSLHELENLN 487

Query: 379 LFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
           +   +RITD G   L  +  NL+++++ G   L+  G+  I  L  L  LNL
Sbjct: 488 IGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 539



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 143/303 (47%), Gaps = 51/303 (16%)

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
           G+  L SLN+  C  + D ++       L NLK+L +S C ++TD+ +  + + L+ L  
Sbjct: 239 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLET 298

Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
           L L GC        L     L  L +LNL  C  +SD G      IG L     GF+  T
Sbjct: 299 LELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQG------IGHLA----GFSRET 348

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
            E            +L L+  G+ D             C  LSD  +G        GLT+
Sbjct: 349 AE-----------GNLQLEYLGLQD-------------CQRLSDEALGHIA----QGLTS 380

Query: 326 LESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FG 381
           L+SINLSF   ++D  L+ LA +  L+ LNL +   I+D G+A LT   +G+  LD+ F 
Sbjct: 381 LKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFC 440

Query: 382 ARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE 439
            +I+D    ++ +    LRSL +    +TD G+  I K L  L  LN+ Q   +TDK L+
Sbjct: 441 DKISDQALTHIAQGLYRLRSLSLNQCQITDQGMLKIAKSLHELENLNIGQCSRITDKGLQ 500

Query: 440 LIS 442
            ++
Sbjct: 501 TLA 503



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 33/219 (15%)

Query: 274 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 324
           G+  L SLNL  C       +G    V+L  L  L    C +++DT +G    +HL  L 
Sbjct: 239 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLKNLE 297

Query: 325 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLT----- 375
            LE     N++ TG+    L    GL  L+ LNL +   I+D G+  L   +  T     
Sbjct: 298 TLELGGCCNITNTGL----LLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNL 353

Query: 376 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 428
            L+  G     R++D    ++ +   +L+S  L  C   +TD+G+KH+  +  L  LNL 
Sbjct: 354 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 412

Query: 429 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL 465
              N++D  +  L  G +G+ SL+VS   +I+   L H+
Sbjct: 413 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHI 451


>gi|320165522|gb|EFW42421.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 743

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 155/347 (44%), Gaps = 26/347 (7%)

Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
           +  NN+IT     AFAGL  L +L+L+                          N IT   
Sbjct: 64  YLNNNSITIISASAFAGLTALTRLELKT-------------------------NQITSFP 98

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
                GLT L+ L ++ +++T        GL  L  L L    +T+    + ++  +L  
Sbjct: 99  ADTFIGLTFLRELFLNYNQITSFPADTFIGLTFLRELFLNYNQITSIPTSAFASQTALIQ 158

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           L+L    ++    + F  +  LK L + FN+ T        GLT L  L+L +  I    
Sbjct: 159 LDLRSNLITSFPADTFIGLTMLKNLYMDFNQFTSIPANTFTGLTALTFLSLHTNQIASIP 218

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
               TGL  L  L+L++ Q+ ++ +   +GLT L  ++L+   I+  S    +GL++L+ 
Sbjct: 219 ANTFTGLTALTFLDLTNNQITNTSVDAFTGLTALTHLDLTDNRITTISASTFSGLTALRL 278

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
           LNL+  QIT       + LT L +L L   +I+    +       L  + +    +T   
Sbjct: 279 LNLNGNQITTISANTFSGLTTLNYLFLTTNQISSISTSAFAGLTVLTEMSLNNNSITSIS 338

Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
                 L++LT+L+LS N  +T    +  + LT L +L++++++ITS
Sbjct: 339 ANTFAVLTALTILDLSDN-QITSIPADAFASLTALDTLSLNDNQITS 384



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 146/351 (41%), Gaps = 35/351 (9%)

Query: 86  LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
           L++N   QI+    +   GL+ L  L F   N IT+    AFA    L++LDL       
Sbjct: 113 LNYN---QITSFPADTFIGLTFLREL-FLNYNQITSIPTSAFASQTALIQLDLRS----- 163

Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
                               N IT        GLT LK+L +  ++ T        GL  
Sbjct: 164 --------------------NLITSFPADTFIGLTMLKNLYMDFNQFTSIPANTFTGLTA 203

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
           LT L+L    + +   ++ + L +L +L+L   Q+++   + F+ + +L  L+L  N IT
Sbjct: 204 LTFLSLHTNQIASIPANTFTGLTALTFLDLTNNQITNTSVDAFTGLTALTHLDLTDNRIT 263

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
                   GLT L  LNL+   I        +GL  L  L L+  Q+ S      +GLT 
Sbjct: 264 TISASTFSGLTALRLLNLNGNQITTISANTFSGLTTLNYLFLTTNQISSISTSAFAGLTV 323

Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           L  ++L+   I+  S    A L++L  L+L   QIT     A  SLT L  L L   +IT
Sbjct: 324 LTEMSLNNNSITSISANTFAVLTALTILDLSDNQITSIPADAFASLTALDTLSLNDNQIT 383

Query: 386 DSGAAYLRNFKNLRSLEICGGGLTD------AGVKHIKDLSSLTLLNLSQN 430
              A    +   L  L +    LT        G+ +   LSS  + NLS N
Sbjct: 384 SIPANAFTSLTTLHRLPLENNPLTTLPPGLFKGLPYGLLLSSSFMPNLSPN 434



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 106/246 (43%), Gaps = 7/246 (2%)

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
           G+   L LN   ++      F+ + +L  L L  N+IT        GLT L  L L+   
Sbjct: 58  GTTTQLYLNNNSITIISASAFAGLTALTRLELKTNQITSFPADTFIGLTFLRELFLNYNQ 117

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           I         GL  L+ L L+  Q+ S      +  T L  ++L    I+        GL
Sbjct: 118 ITSFPADTFIGLTFLRELFLNYNQITSIPTSAFASQTALIQLDLRSNLITSFPADTFIGL 177

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
           + LK+L +D  Q T       T LT LT L L   +I    A        L  L++    
Sbjct: 178 TMLKNLYMDFNQFTSIPANTFTGLTALTFLSLHTNQIASIPANTFTGLTALTFLDLTNNQ 237

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS------AG 461
           +T+  V     L++LT L+L+ N  +T  +    SGLT L  LN++ ++IT+      +G
Sbjct: 238 ITNTSVDAFTGLTALTHLDLTDN-RITTISASTFSGLTALRLLNLNGNQITTISANTFSG 296

Query: 462 LRHLNH 467
           L  LN+
Sbjct: 297 LTTLNY 302


>gi|222617264|gb|EEE53396.1| hypothetical protein OsJ_36445 [Oryza sativa Japonica Group]
          Length = 625

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 128/439 (29%), Positives = 195/439 (44%), Gaps = 68/439 (15%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFC 91
           ++ +CL +  GV  + +D + +    L +VDLS      D     L   + L+ L    C
Sbjct: 73  VRRVCLARASGVGWRGLDALVAACPRLEAVDLSHCVGAGDREAAALAAATGLRELSLEKC 132

Query: 92  IQISDGGLEH-LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLDLERCTRIHGGLV 149
           + ++D GL   + G   L  LS +    I+  G+   +   + L  LD+      +  L 
Sbjct: 133 LGVTDMGLAKVVVGCPRLEKLSLKWCREISDIGIDLLSKKCHELRSLDISYLKVGNESLR 192

Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGIAYL----KGL 203
           ++  L KLE L +  C+CI D  ++ L  G  +L+S+ +S C  VT  G+A L      L
Sbjct: 193 SISSLEKLEELAMVCCSCIDDDGLELLGKGSNSLQSVDVSRCDHVTSQGLASLIDGHNFL 252

Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
           QKL           AA  DSL  +   F  NL +  L D          +L VL L   E
Sbjct: 253 QKL----------NAA--DSLHEMRQSFLSNLAK--LKD----------TLTVLRLDGLE 288

Query: 264 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC------NLKCLEL--------- 307
           ++   L+ + G  NL  + L  C G+ DEG+ +L   C      +L C  L         
Sbjct: 289 VSSSVLLAIGGCNNLVEIGLSKCNGVTDEGISSLVTQCSHLRVIDLTCCNLLTNNALDSI 348

Query: 308 -------------SDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
                        S + +   GL  ++    NL+ I+L+  G++D +L+ LA  S L  L
Sbjct: 349 AENCKMVEHLRLESCSSISEKGLEQIATSCPNLKEIDLTDCGVNDAALQHLAKCSELLVL 408

Query: 354 NLD-ARQITDTGLAALTSLTG-LTHLDLFGAR-ITDSGAAYLRN-FKNLRSLEICG-GGL 408
            L     I+D GLA ++S  G L  LDL+    ITD G A L N  K ++ L +C    +
Sbjct: 409 KLGLCSSISDKGLAFISSSCGKLIELDLYRCNSITDDGLAALANGCKKIKMLNLCYCNKI 468

Query: 409 TDAGVKHIKDLSSLTLLNL 427
           TD+G+ H+  L  LT L L
Sbjct: 469 TDSGLGHLGSLEELTNLEL 487



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 120/456 (26%), Positives = 213/456 (46%), Gaps = 76/456 (16%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
           L+ L L     ++D  +D+++ +   L S+D+S   V +  L  +     L+ L    C 
Sbjct: 150 LEKLSLKWCREISDIGIDLLSKKCHELRSLDISYLKVGNESLRSISSLEKLEELAMVCCS 209

Query: 93  QISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
            I D GLE L +G ++L S+   R + +T+QG+   A LI+              G   L
Sbjct: 210 CIDDDGLELLGKGSNSLQSVDVSRCDHVTSQGL---ASLID--------------GHNFL 252

Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
           + L   +SL+          +M+  S L+NL  L+                   LT+L L
Sbjct: 253 QKLNAADSLH----------EMRQ-SFLSNLAKLK-----------------DTLTVLRL 284

Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKF-SKIGSLKVLNL---------G 260
           +G  V+++ L ++    +L  + L++C  ++D+G     ++   L+V++L          
Sbjct: 285 DGLEVSSSVLLAIGGCNNLVEIGLSKCNGVTDEGISSLVTQCSHLRVIDLTCCNLLTNNA 344

Query: 261 FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLR 318
            + I + C +       +E L L+SC  I ++GL  +   C NLK ++L+D  V  + L+
Sbjct: 345 LDSIAENCKM-------VEHLRLESCSSISEKGLEQIATSCPNLKEIDLTDCGVNDAALQ 397

Query: 319 HLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQ---ITDTGLAALTS-LTG 373
           HL+  + L  + L   + ISD  L  ++  S  K + LD  +   ITD GLAAL +    
Sbjct: 398 HLAKCSELLVLKLGLCSSISDKGLAFISS-SCGKLIELDLYRCNSITDDGLAALANGCKK 456

Query: 374 LTHLDL-FGARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIK-DLSSLTLLNLSQN 430
           +  L+L +  +ITDSG  +L + + L +LE+ C   +T  G+  +     +L  ++L + 
Sbjct: 457 IKMLNLCYCNKITDSGLGHLGSLEELTNLELRCLVRITGIGISSVAIGCKNLIEIDLKRC 516

Query: 431 CNLTDKTLELISGLT-GLVSLNVSNSRITSAGLRHL 465
            ++ D  L  ++     L  L +S  ++T  GL HL
Sbjct: 517 YSVDDAGLWALARYALNLRQLTISYCQVTGLGLCHL 552



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 104/404 (25%), Positives = 173/404 (42%), Gaps = 67/404 (16%)

Query: 80  CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
           C  L+++D + C+   D     L   + L  LS  +   +T  G+               
Sbjct: 96  CPRLEAVDLSHCVGAGDREAAALAAATGLRELSLEKCLGVTDMGLAKV------------ 143

Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN-LKSLQISCSKVTDSGIA 198
                      + G  +LE L++KWC  I+D  +  LS   + L+SL IS  KV +  + 
Sbjct: 144 -----------VVGCPRLEKLSLKWCREISDIGIDLLSKKCHELRSLDISYLKVGNESLR 192

Query: 199 YLKGLQKLTLLNLEGCPVTAACLDS--LSALG----SLFYLNLNRCQLSDDGCEKFSKIG 252
            +  L+KL  L +    V  +C+D   L  LG    SL  ++++RC              
Sbjct: 193 SISSLEKLEELAM----VCCSCIDDDGLELLGKGSNSLQSVDVSRCD------------- 235

Query: 253 SLKVLNLGFNEITDECLVH--LKGLTNLESLNLDSCGIGDEGLVNLTGLCN-LKCLELSD 309
              V + G   + D    H  L+ L   +SL+     +    L NL  L + L  L L  
Sbjct: 236 --HVTSQGLASLIDG---HNFLQKLNAADSLH----EMRQSFLSNLAKLKDTLTVLRLDG 286

Query: 310 TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLA 366
            +V SS L  + G  NL  I LS   G++D  +  L    S L+ ++L     +T+  L 
Sbjct: 287 LEVSSSVLLAIGGCNNLVEIGLSKCNGVTDEGISSLVTQCSHLRVIDLTCCNLLTNNALD 346

Query: 367 ALTSLTGLT-HLDLFG-ARITDSGAAYLR-NFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
           ++     +  HL L   + I++ G   +  +  NL+ +++   G+ DA ++H+   S L 
Sbjct: 347 SIAENCKMVEHLRLESCSSISEKGLEQIATSCPNLKEIDLTDCGVNDAALQHLAKCSELL 406

Query: 424 LLNLSQNCNLTDKTLELISGLTG-LVSLNVSN-SRITSAGLRHL 465
           +L L    +++DK L  IS   G L+ L++   + IT  GL  L
Sbjct: 407 VLKLGLCSSISDKGLAFISSSCGKLIELDLYRCNSITDDGLAAL 450


>gi|290990083|ref|XP_002677666.1| predicted protein [Naegleria gruberi]
 gi|284091275|gb|EFC44922.1| predicted protein [Naegleria gruberi]
          Length = 262

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 122/245 (49%), Gaps = 9/245 (3%)

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNR 237
           L  L SL I    V D  IA L  L+ LT LN+   P+    L  +   L  L  L++  
Sbjct: 5   LKQLNSLNIGYCSVED--IAPLGQLKDLTCLNINHIPIGLEGLKIIGENLQQLKSLDVTN 62

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT---NLESLNL-DSCGIG-DEG 292
           C ++++  +   ++ +L+ L + F     +CL  ++ L+    L+SLN+ +S  IG  +G
Sbjct: 63  CGITNEAAQYIRQLNNLESLTITF-VFYQKCLKGVEALSEMKQLKSLNIGNSSDIGGPQG 121

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
              ++ L NL  L +  T +   G R +S L +L  ++L+   ISD   + ++GL  +  
Sbjct: 122 AKLISSLYNLTSLRMDGTMIEDEGARFISELKHLRFLDLTGNNISDEGAKSISGLKHVTD 181

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
           L++    I D G  A+ ++  L  L L   +I D GA Y+     LRSL +CG  +T   
Sbjct: 182 LDMARNDIGDEGAKAIATMNQLKRLILDNNKIGDDGAQYIGKLPQLRSLAVCGNRITPVS 241

Query: 413 VKHIK 417
           +++++
Sbjct: 242 IQNLR 246



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 100/211 (47%), Gaps = 27/211 (12%)

Query: 78  KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
           ++   L+SLD   C  I++   +++R L+NL SL+                    +  + 
Sbjct: 50  ENLQQLKSLDVTNC-GITNEAAQYIRQLNNLESLT--------------------ITFVF 88

Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD-MKPLSGLTNLKSLQISCSKVTDSG 196
            ++C +   G+  L  + +L+SLNI   + I      K +S L NL SL++  + + D G
Sbjct: 89  YQKCLK---GVEALSEMKQLKSLNIGNSSDIGGPQGAKLISSLYNLTSLRMDGTMIEDEG 145

Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
             ++  L+ L  L+L G  ++     S+S L  +  L++ R  + D+G +  + +  LK 
Sbjct: 146 ARFISELKHLRFLDLTGNNISDEGAKSISGLKHVTDLDMARNDIGDEGAKAIATMNQLKR 205

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
           L L  N+I D+   ++  L  L SL +  CG
Sbjct: 206 LILDNNKIGDDGAQYIGKLPQLRSLAV--CG 234



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 101/227 (44%), Gaps = 27/227 (11%)

Query: 49  MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHLRGLSN 107
           + +I      L S+D++   +T+    +++  +NL+SL   F   Q    G+E L  +  
Sbjct: 45  LKIIGENLQQLKSLDVTNCGITNEAAQYIRQLNNLESLTITFVFYQKCLKGVEALSEMKQ 104

Query: 108 LTSLSFRRNNAIT-AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
           L SL+   ++ I   QG K  + L NL  L      R+ G +                  
Sbjct: 105 LKSLNIGNSSDIGGPQGAKLISSLYNLTSL------RMDGTM------------------ 140

Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
            I D   + +S L +L+ L ++ + ++D G   + GL+ +T L++    +      +++ 
Sbjct: 141 -IEDEGARFISELKHLRFLDLTGNNISDEGAKSISGLKHVTDLDMARNDIGDEGAKAIAT 199

Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
           +  L  L L+  ++ DDG +   K+  L+ L +  N IT   + +L+
Sbjct: 200 MNQLKRLILDNNKIGDDGAQYIGKLPQLRSLAVCGNRITPVSIQNLR 246


>gi|168700135|ref|ZP_02732412.1| hypothetical protein GobsU_11445 [Gemmata obscuriglobus UQM 2246]
          Length = 120

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/120 (45%), Positives = 74/120 (61%), Gaps = 3/120 (2%)

Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
           L  LKGLT L   +L    + D G+  L+GL  L  LEL+ TQV  +G++ LSGLT L +
Sbjct: 4   LAALKGLTQL---DLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60

Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
           ++L FT ++D  ++ L+GL  L  LNL    +TD G+ AL  L GLT LDL   R+TD+G
Sbjct: 61  LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDAG 120



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 4/119 (3%)

Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
           L  LKGL +L+  + K    +TD  +K LSGL  L  L+++ ++VTD+G+  L GL  LT
Sbjct: 4   LAALKGLTQLDLFDTK----VTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALT 59

Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
            L+L    VT A + +LS L  L  LNL    ++D G +  + +  L +L+L F  +TD
Sbjct: 60  TLDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTD 118



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 69/118 (58%)

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
            L  L  L  L+L DT+V   G++ LSGL  L  + L+FT ++D  ++ L+GL++L +L+
Sbjct: 3   ELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTTLD 62

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
           L   ++TD G+ AL+ L  L  L+L    +TD+G   L   K L  L++    +TDAG
Sbjct: 63  LGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDAG 120



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 67/112 (59%)

Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
           ++ L+ L  L  ++L  T ++D  +++L+GL  L  L L   Q+TD G+ AL+ LT LT 
Sbjct: 1   MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60

Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
           LDL   ++TD+G   L   K+L  L +    +TDAGVK +  L  LT+L+LS
Sbjct: 61  LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLS 112



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 71/121 (58%), Gaps = 1/121 (0%)

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
           +++LA L  L  L+L   ++TD G+  L+ L GLT L+L   ++TD+G   L     L +
Sbjct: 1   MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60

Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
           L++    +TDAGVK +  L  L  LNL     +TD  ++ ++GL GL  L++S +R+T A
Sbjct: 61  LDLGFTKVTDAGVKALSGLKHLIQLNLGVTV-VTDAGVKALAGLKGLTILDLSFTRVTDA 119

Query: 461 G 461
           G
Sbjct: 120 G 120



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 67/121 (55%), Gaps = 1/121 (0%)

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
           MK  A L  L +LDL        G+  L GL  L  L + +   +TD+ +K LSGLT L 
Sbjct: 1   MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQ-VTDAGVKALSGLTALT 59

Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
           +L +  +KVTD+G+  L GL+ L  LNL    VT A + +L+ L  L  L+L+  +++D 
Sbjct: 60  TLDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDA 119

Query: 244 G 244
           G
Sbjct: 120 G 120



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 59/98 (60%), Gaps = 1/98 (1%)

Query: 368 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
           L +L GLT LDLF  ++TD G   L   K L  LE+    +TDAGVK +  L++LT L+L
Sbjct: 4   LAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTTLDL 63

Query: 428 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
                +TD  ++ +SGL  L+ LN+  + +T AG++ L
Sbjct: 64  G-FTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKAL 100



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 68/118 (57%)

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
           +  L+AL  L  L+L   +++D G ++ S +  L  L L F ++TD  +  L GLT L +
Sbjct: 1   MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
           L+L    + D G+  L+GL +L  L L  T V  +G++ L+GL  L  ++LSFT ++D
Sbjct: 61  LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTD 118



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 63/120 (52%)

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           MK L+ L  L  L +  +KVTD G+  L GL+ LT L L    VT A + +LS L +L  
Sbjct: 1   MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           L+L   +++D G +  S +  L  LNLG   +TD  +  L GL  L  L+L    + D G
Sbjct: 61  LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDAG 120



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 66/120 (55%)

Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
            ++ + +  L  L+L   ++TD  +  L GL  L  L L    + D G+  L+GL  L  
Sbjct: 1   MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60

Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
           L+L  T+V  +G++ LSGL +L  +NL  T ++D  ++ LAGL  L  L+L   ++TD G
Sbjct: 61  LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDAG 120



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 76  HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
            L     L  LD  F  +++D G++ L GL  LT L       +T  G+KA +GL  L  
Sbjct: 3   ELAALKGLTQLDL-FDTKVTDVGVKELSGLKGLTRLELTFTQ-VTDAGVKALSGLTALTT 60

Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
           LDL        G+  L GL  L  LN+     +TD+ +K L+GL  L  L +S ++VTD+
Sbjct: 61  LDLGFTKVTDAGVKALSGLKHLIQLNL-GVTVVTDAGVKALAGLKGLTILDLSFTRVTDA 119

Query: 196 G 196
           G
Sbjct: 120 G 120



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++L+ + VTD+G+  L   + L +LD  F  +++D G++ L GL +L  L+      
Sbjct: 34  LTRLELTFTQVTDAGVKALSGLTALTTLDLGFT-KVTDAGVKALSGLKHLIQLNLGV-TV 91

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRI 144
           +T  G+KA AGL  L  LDL   TR+
Sbjct: 92  VTDAGVKALAGLKGLTILDLS-FTRV 116


>gi|255523032|ref|ZP_05390004.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
 gi|255513147|gb|EET89415.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
          Length = 676

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 166/329 (50%), Gaps = 53/329 (16%)

Query: 124 MKAFAG---LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           +K F+G   L NL +L+L R + I+  +  LK L+KL+S+++ +      SD+  L  LT
Sbjct: 170 IKDFSGIENLTNLKQLNL-RESEIND-ISELKNLVKLQSIDLSYNKI---SDISALKNLT 224

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NLK L +  +KV D  I+ L  L  L  LNL   P          A         N  ++
Sbjct: 225 NLKKLNLGNNKVRD--ISVLSKLTNLQELNLGYIPYHDFETPDPEA---------NYNEI 273

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVN-LTG 298
           SD    K   + +L+ LNLG+ +I D  L  LKGL NL++L+L    I D   +VN L  
Sbjct: 274 SDISALK--NLTNLQTLNLGYTKIKD--LNALKGLNNLKTLDLSGNQISDISSIVNVLKE 329

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
           L +L  L LS  ++  S +  L+ LT+L+ + L+   IS+  + +L GLS+L++L+L + 
Sbjct: 330 LTSLNDLNLSTNEI--SNIDELNKLTSLKMLKLNSNKISN--INRLKGLSNLQTLDLSSN 385

Query: 359 QITDTG---------------------LAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
           QI+DT                      +  L  LT L  L+L+  +I+D  A  L+   N
Sbjct: 386 QISDTANTLKELNNLNDLNLSNNQISNIGELNKLTNLKALNLYYNKISDISA--LKGLSN 443

Query: 398 LRSLEICGGGLTDAGV-KHIKDLSSLTLL 425
           L+ +++    ++D  V +++ +L  L LL
Sbjct: 444 LQMIDLSYNEISDISVFENLANLRELILL 472



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/214 (34%), Positives = 116/214 (54%), Gaps = 21/214 (9%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
           +ISD  +  L+ L+NL +L+         + + A  GL NL  LDL   + + I   +  
Sbjct: 272 EISD--ISALKNLTNLQTLNL---GYTKIKDLNALKGLNNLKTLDLSGNQISDISSIVNV 326

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
           LK L  L  LN+   N I++ D   L+ LT+LK L+++ +K+  S I  LKGL  L  L+
Sbjct: 327 LKELTSLNDLNLS-TNEISNID--ELNKLTSLKMLKLNSNKI--SNINRLKGLSNLQTLD 381

Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
           L    ++    ++L  L +L  LNL+  Q+S+ G  + +K+ +LK LNL +N+I+D  + 
Sbjct: 382 LSSNQISDTA-NTLKELNNLNDLNLSNNQISNIG--ELNKLTNLKALNLYYNKISD--IS 436

Query: 271 HLKGLTNLESLNLDSCGIGD----EGLVNLTGLC 300
            LKGL+NL+ ++L    I D    E L NL  L 
Sbjct: 437 ALKGLSNLQMIDLSYNEISDISVFENLANLRELI 470


>gi|168052598|ref|XP_001778727.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669846|gb|EDQ56425.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 643

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 123/473 (26%), Positives = 208/473 (43%), Gaps = 42/473 (8%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIA--SQGSS 58
           MLP +++ ++FN L+ S  L+   +  F+   LQ++ L     V+ +WM  +       +
Sbjct: 41  MLPSELAHELFNSLLQSHLLSATLIGLFQS-NLQEVNLSGEATVDGEWMAYLGGCRHLRA 99

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L + D     +T++ +  L   + ++ LD   C +ISD  + H+     L  L       
Sbjct: 100 LRATDCKA--LTNNAIRQLTGLTAMEELDLARCRKISDDAVPHILSFKMLRKLGLAETGL 157

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
            T   +    GL  LV LDL  C      L++ + L  LE L++ W + +T+   + LS 
Sbjct: 158 TTKGLLLL-PGLSRLVLLDLGGCPVTDADLISFQALGMLEHLDL-WGSKVTNMGARCLSS 215

Query: 179 LTNLKSLQISCSKVT----------------DSGIAYLKGLQKLTLLN---LEGCPVTAA 219
              LK L ++ + VT                D    Y  G    +LL    L G  ++  
Sbjct: 216 FKTLKYLNLAMTAVTAIPQLNSLLSLNLCNCDVESIYGDGTFSDSLLRELFLSGASLSLK 275

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL-TNL 278
            + S S   +L  L+L   +++D   + F  I  L +L+L    +T+E ++  +GL  NL
Sbjct: 276 DVISGSNTRNLHLLDLASSRVND--LDAFVHIPKLAILDLRATGLTNELMLKFQGLGDNL 333

Query: 279 ESLNLDSCGIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLS----- 332
             ++L    I  EG+  + G   N++ L L+ T V  +   +L     L+S+NL      
Sbjct: 334 RWIDLSYTKIDSEGVGAIAGHAPNVEQLSLNHTPVDDNVFIYLVHFPVLQSLNLGGSKVN 393

Query: 333 -FTGISDGSLRKLAGLSSLKSLN----LDARQ--ITDTGLAALTSLTGLTHLDLFGARIT 385
            F  +     ++++ LS L+ L     LD R   + D  L  L +L  L+HL +    ++
Sbjct: 394 GFMTVGSEEFQQISVLSYLEQLQHLRRLDMRYTGVGDAALHGLKNLVQLSHLHIHSNSLS 453

Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
           D     L +F NL  L I G  +T  G+   K  S L  L+L+    LT+  L
Sbjct: 454 DECLQQLSSFPNLVCLGIGGATITADGLLSYKPPSLLEELDLTDCWLLTEPAL 506



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 169/397 (42%), Gaps = 85/397 (21%)

Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL---KGL 203
           +  L G   L +L    C  +T++ ++ L+GLT ++ L ++ C K++D  + ++   K L
Sbjct: 88  MAYLGGCRHLRALRATDCKALTNNAIRQLTGLTAMEELDLARCRKISDDAVPHILSFKML 147

Query: 204 QKL---------------------TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           +KL                      LL+L GCPVT A L S  ALG L +L+L   ++++
Sbjct: 148 RKLGLAETGLTTKGLLLLPGLSRLVLLDLGGCPVTDADLISFQALGMLEHLDLWGSKVTN 207

Query: 243 DGCEKFSKIGSLKVLNLGFNEIT----------------------------DECLVHL-- 272
            G    S   +LK LNL    +T                            D  L  L  
Sbjct: 208 MGARCLSSFKTLKYLNLAMTAVTAIPQLNSLLSLNLCNCDVESIYGDGTFSDSLLRELFL 267

Query: 273 -------------KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
                            NL  L+L S  + D  L     +  L  L+L  T + +  +  
Sbjct: 268 SGASLSLKDVISGSNTRNLHLLDLASSRVND--LDAFVHIPKLAILDLRATGLTNELMLK 325

Query: 320 LSGL-TNLESINLSFTGISDGSLRKLAGLSS-LKSLNLDARQITDTGLAALTSLTGLTHL 377
             GL  NL  I+LS+T I    +  +AG +  ++ L+L+   + D     L     L  L
Sbjct: 326 FQGLGDNLRWIDLSYTKIDSEGVGAIAGHAPNVEQLSLNHTPVDDNVFIYLVHFPVLQSL 385

Query: 378 DLFGARITD------------SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
           +L G+++              S  +YL   ++LR L++   G+ DA +  +K+L  L+ L
Sbjct: 386 NLGGSKVNGFMTVGSEEFQQISVLSYLEQLQHLRRLDMRYTGVGDAALHGLKNLVQLSHL 445

Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
           ++  N +L+D+ L+ +S    LV L +  + IT+ GL
Sbjct: 446 HIHSN-SLSDECLQQLSSFPNLVCLGIGGATITADGL 481


>gi|290993104|ref|XP_002679173.1| LRR_RI domain-containing protein [Naegleria gruberi]
 gi|284092789|gb|EFC46429.1| LRR_RI domain-containing protein [Naegleria gruberi]
          Length = 370

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 130/272 (47%), Gaps = 1/272 (0%)

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           + NL+ L +   ++  +    +  ++ LT L+L G  ++   +D +S +  L YL ++  
Sbjct: 93  MRNLQELYLVSKELDSNDAQVISEMKSLTKLDLNGNRISDEGVDFISKMSGLTYLRIDSN 152

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
            + D+G +    +  L+ L +  N   +     +  + NL  L++    +G EG  ++  
Sbjct: 153 AVHDEGAKSIQGMKGLRTLKVSNNSFFEVGFEAISQMGNLTKLDMSENSLGIEGTKSIGI 212

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
           + NL  L++    +GS G+++L+ +  L  +++    I +   + +  L  L  L++   
Sbjct: 213 MKNLTSLKIDYNHIGSEGVKYLNEMKQLTKLSIVENQIDEEGAKYIGELKQLTILDISFN 272

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
            + + G  ++++L  LT LD+    I ++GA  L N   L  L+I    +   G K +  
Sbjct: 273 YVGEKGAKSISTLNKLTMLDIIENNIGENGAISLSNLNQLTKLDINSNNIGHLGAKSLVK 332

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
           L+ L  LN+S N N+ D  + +I  +  L SL
Sbjct: 333 LNQLKELNISYN-NINDLEINIIRQMKNLKSL 363



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 121/256 (47%), Gaps = 7/256 (2%)

Query: 52  IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
           + S+  SL  +DL+G+ ++D G+  +   S L  L  +    + D G + ++G+  L +L
Sbjct: 113 VISEMKSLTKLDLNGNRISDEGVDFISKMSGLTYLRID-SNAVHDEGAKSIQGMKGLRTL 171

Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDL-ERCTRIHGGLVNLKGLMK-LESLNIKWCNCIT 169
               NN+    G +A + + NL KLD+ E    I G      G+MK L SL I + N I 
Sbjct: 172 KV-SNNSFFEVGFEAISQMGNLTKLDMSENSLGIEG--TKSIGIMKNLTSLKIDY-NHIG 227

Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
              +K L+ +  L  L I  +++ + G  Y+  L++LT+L++    V      S+S L  
Sbjct: 228 SEGVKYLNEMKQLTKLSIVENQIDEEGAKYIGELKQLTILDISFNYVGEKGAKSISTLNK 287

Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
           L  L++    + ++G    S +  L  L++  N I       L  L  L+ LN+    I 
Sbjct: 288 LTMLDIIENNIGENGAISLSNLNQLTKLDINSNNIGHLGAKSLVKLNQLKELNISYNNIN 347

Query: 290 DEGLVNLTGLCNLKCL 305
           D  +  +  + NLK L
Sbjct: 348 DLEINIIRQMKNLKSL 363


>gi|356551924|ref|XP_003544322.1| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max]
          Length = 652

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 117/414 (28%), Positives = 196/414 (47%), Gaps = 64/414 (15%)

Query: 20  LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTD--SGLI 75
           LT+V+ +A  +   L+ LCLG+  G+ D  +  IA + S L  V L     VTD  +GLI
Sbjct: 139 LTDVAAKAIAEAVNLERLCLGRCKGITDLGIGCIAVRCSKLRHVGLRWCIRVTDFGAGLI 198

Query: 76  HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF-AGLINLV 134
            +K C  ++SLD ++ + I++  L H+  L +L  L       I   G+    A   ++ 
Sbjct: 199 AIK-CKEIRSLDLSY-LPITEKCLNHILQLEHLEDLILEHCLGIEDHGLATLQASCKSMK 256

Query: 135 KLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
            L+L +C  I H G+ +L                         SG  NL+ L +S S + 
Sbjct: 257 MLNLSKCQNIGHIGIASLT------------------------SGSQNLEKLILSSSVIV 292

Query: 194 DSGIAY-LKGLQKLTLLNLEGCPVTAACLDSLSALG-SLFYLNLNRCQ-LSDDG------ 244
            + +A  L+   +L  + L+ C  T + L ++  LG SL  LNL++C  ++D+       
Sbjct: 293 TTDLAKCLQSFSRLQSVKLDSCLGTKSGLKAIGNLGASLKELNLSKCVGVTDENLPFLVQ 352

Query: 245 ----CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGL 299
                EK        + +   + +T+ CL        L SL ++SC  +  EG +   G 
Sbjct: 353 PHKDLEKLDITCCHTITHASISSLTNSCL-------RLTSLRMESCSLVSREGFL-FIGR 404

Query: 300 CN-LKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNL- 355
           C  L+ L+++DT++   GL+ +S  T L S+ L   + I+D  L+ +A   S LK L+L 
Sbjct: 405 CQLLEELDVTDTEIDDQGLQSISRCTKLSSLKLGICSMITDNGLKHIASSCSKLKQLDLY 464

Query: 356 DARQITDTGLAALTSLTGLTHLDL----FGARITDSGAAYLRNFKNLRSLEICG 405
            + +ITD G+ A+    G   L++    + +  TD+   +L   + LR+LEI G
Sbjct: 465 RSSRITDEGIVAIA--LGCPSLEVVNIAYNSNTTDTSLEFLSKCQKLRTLEIRG 516



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 158/316 (50%), Gaps = 27/316 (8%)

Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
           C C+ ++D+     LT+          V    IA    L++L L   +G  +T   +  +
Sbjct: 125 CTCLVEADLSNRPDLTD----------VAAKAIAEAVNLERLCLGRCKG--ITDLGIGCI 172

Query: 225 SALGS-LFYLNLNRC-QLSDDGCEKFS-KIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
           +   S L ++ L  C +++D G    + K   ++ L+L +  IT++CL H+  L +LE L
Sbjct: 173 AVRCSKLRHVGLRWCIRVTDFGAGLIAIKCKEIRSLDLSYLPITEKCLNHILQLEHLEDL 232

Query: 282 NLDSC-GIGDEGLVNLTGLC-NLKCLELSDTQ-VGSSGLRHL-SGLTNLESINLSFTGIS 337
            L+ C GI D GL  L   C ++K L LS  Q +G  G+  L SG  NLE + LS + I 
Sbjct: 233 ILEHCLGIEDHGLATLQASCKSMKMLNLSKCQNIGHIGIASLTSGSQNLEKLILSSSVIV 292

Query: 338 DGSLRK-LAGLSSLKSLNLDARQITDTGLAALTSL-TGLTHLDLFGAR-ITDSGAAYL-R 393
              L K L   S L+S+ LD+   T +GL A+ +L   L  L+L     +TD    +L +
Sbjct: 293 TTDLAKCLQSFSRLQSVKLDSCLGTKSGLKAIGNLGASLKELNLSKCVGVTDENLPFLVQ 352

Query: 394 NFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLS-QNCNLTDKTLELISGLTGLV-SL 450
             K+L  L+I C   +T A +  + + S L L +L  ++C+L  +   L  G   L+  L
Sbjct: 353 PHKDLEKLDITCCHTITHASISSLTN-SCLRLTSLRMESCSLVSREGFLFIGRCQLLEEL 411

Query: 451 NVSNSRITSAGLRHLN 466
           +V+++ I   GL+ ++
Sbjct: 412 DVTDTEIDDQGLQSIS 427



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 33/188 (17%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNN 117
           L  +D++ +++ D GL  +  C+ L SL    C  I+D GL+H+    S L  L   R++
Sbjct: 408 LEELDVTDTEIDDQGLQSISRCTKLSSLKLGICSMITDNGLKHIASSCSKLKQLDLYRSS 467

Query: 118 AITAQGMKAFA------GLINLV--------------------KLDLERCTRIHG-GLVN 150
            IT +G+ A A       ++N+                      L++  C RI   GL N
Sbjct: 468 RITDEGIVAIALGCPSLEVVNIAYNSNTTDTSLEFLSKCQKLRTLEIRGCPRISPKGLSN 527

Query: 151 LKGLMK-LESLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSKVTDSG---IAYLKGLQK 205
           +    + LE L+IK C+ I D+ M  L+  + NLK +++S   VTD G   +A +  LQ 
Sbjct: 528 IVARCRYLEMLDIKKCHKINDTGMIQLAQHSQNLKHIKLSYCSVTDVGLIALASISCLQH 587

Query: 206 LTLLNLEG 213
           +++ ++EG
Sbjct: 588 ISIFHVEG 595


>gi|290997297|ref|XP_002681218.1| leucine-rich repeat ribonuclease inhibitor family protein
           [Naegleria gruberi]
 gi|284094841|gb|EFC48474.1| leucine-rich repeat ribonuclease inhibitor family protein
           [Naegleria gruberi]
          Length = 342

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 108/217 (49%)

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           ++ +  L SL I  +++ D G  Y+  +++LT LN+    +       +S +  L  L++
Sbjct: 124 VTEMKQLTSLNIRGNRIGDEGAKYISEMKQLTSLNIRENEIGDEGAKFISEMKQLTSLDI 183

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
              ++ D+G +  S++  L  LN+ +  I  E    +  +  L  LN+    IG EG   
Sbjct: 184 RGNRIGDEGAKYISEMKQLTSLNIYYTLIGIEGAKFISEMKQLTLLNIYYNLIGIEGAKF 243

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           ++ +  L  L++S+ ++G  G + +S +  L S+N+++  I D   + ++ +  L SLN+
Sbjct: 244 ISEMKQLTLLDISNNEIGIEGAKFISEMKQLTSLNINYNEIGDRGAKFISEMKQLTSLNI 303

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
                 D G   ++ +  LT LD+   RI D GA Y+
Sbjct: 304 SYNITGDRGAKFISEMKQLTSLDISNNRICDEGAKYI 340



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 112/242 (46%), Gaps = 25/242 (10%)

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           ++ +  L  LN+   ++ D+G +  S++  L  LN+  NEI DE    +  +  L SL++
Sbjct: 124 VTEMKQLTSLNIRGNRIGDEGAKYISEMKQLTSLNIRENEIGDEGAKFISEMKQLTSLDI 183

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
               IGDEG   ++ +  L  L +  T +G  G + +S +  L  +N+ +          
Sbjct: 184 RGNRIGDEGAKYISEMKQLTSLNIYYTLIGIEGAKFISEMKQLTLLNIYYN--------- 234

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           L G+                G   ++ +  LT LD+    I   GA ++   K L SL I
Sbjct: 235 LIGIE---------------GAKFISEMKQLTLLDISNNEIGIEGAKFISEMKQLTSLNI 279

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
               + D G K I ++  LT LN+S N    D+  + IS +  L SL++SN+RI   G +
Sbjct: 280 NYNEIGDRGAKFISEMKQLTSLNISYNIT-GDRGAKFISEMKQLTSLDISNNRICDEGAK 338

Query: 464 HL 465
           ++
Sbjct: 339 YI 340



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 104/214 (48%)

Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
           +++LT LN+ G  +       +S +  L  LN+   ++ D+G +  S++  L  L++  N
Sbjct: 127 MKQLTSLNIRGNRIGDEGAKYISEMKQLTSLNIRENEIGDEGAKFISEMKQLTSLDIRGN 186

Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
            I DE   ++  +  L SLN+    IG EG   ++ +  L  L +    +G  G + +S 
Sbjct: 187 RIGDEGAKYISEMKQLTSLNIYYTLIGIEGAKFISEMKQLTLLNIYYNLIGIEGAKFISE 246

Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
           +  L  +++S   I     + ++ +  L SLN++  +I D G   ++ +  LT L++   
Sbjct: 247 MKQLTLLDISNNEIGIEGAKFISEMKQLTSLNINYNEIGDRGAKFISEMKQLTSLNISYN 306

Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
              D GA ++   K L SL+I    + D G K+I
Sbjct: 307 ITGDRGAKFISEMKQLTSLDISNNRICDEGAKYI 340



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 86/174 (49%), Gaps = 1/174 (0%)

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           +T +  L  L +   ++G  G +++S +  L S+N+    I D   + ++ +  L SL++
Sbjct: 124 VTEMKQLTSLNIRGNRIGDEGAKYISEMKQLTSLNIRENEIGDEGAKFISEMKQLTSLDI 183

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
              +I D G   ++ +  LT L+++   I   GA ++   K L  L I    +   G K 
Sbjct: 184 RGNRIGDEGAKYISEMKQLTSLNIYYTLIGIEGAKFISEMKQLTLLNIYYNLIGIEGAKF 243

Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           I ++  LTLL++S N  +  +  + IS +  L SLN++ + I   G + ++  +
Sbjct: 244 ISEMKQLTLLDISNN-EIGIEGAKFISEMKQLTSLNINYNEIGDRGAKFISEMK 296



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 26/228 (11%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           +I D G +++  +  LTSL+ R  N I  +G K  + +  L  LD      I G      
Sbjct: 139 RIGDEGAKYISEMKQLTSLNIRE-NEIGDEGAKFISEMKQLTSLD------IRG------ 185

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
                        N I D   K +S +  L SL I  + +   G  ++  +++LTLLN+ 
Sbjct: 186 -------------NRIGDEGAKYISEMKQLTSLNIYYTLIGIEGAKFISEMKQLTLLNIY 232

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
              +       +S +  L  L+++  ++  +G +  S++  L  LN+ +NEI D     +
Sbjct: 233 YNLIGIEGAKFISEMKQLTLLDISNNEIGIEGAKFISEMKQLTSLNINYNEIGDRGAKFI 292

Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
             +  L SLN+     GD G   ++ +  L  L++S+ ++   G +++
Sbjct: 293 SEMKQLTSLNISYNITGDRGAKFISEMKQLTSLDISNNRICDEGAKYI 340



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 3/158 (1%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+   L S+D+ G+ + D G  ++ +   L SL+  + + I   G + +  +  LT L+ 
Sbjct: 173 SEMKQLTSLDIRGNRIGDEGAKYISEMKQLTSLNIYYTL-IGIEGAKFISEMKQLTLLNI 231

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
              N I  +G K  + +  L  LD+        G   +  + +L SLNI + N I D   
Sbjct: 232 YY-NLIGIEGAKFISEMKQLTLLDISNNEIGIEGAKFISEMKQLTSLNINY-NEIGDRGA 289

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
           K +S +  L SL IS +   D G  ++  +++LT L++
Sbjct: 290 KFISEMKQLTSLNISYNITGDRGAKFISEMKQLTSLDI 327



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 49/239 (20%), Positives = 95/239 (39%), Gaps = 51/239 (21%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+   L S+++  +++ D G   + +   L SLD     +I D G +++  +  LTSL+ 
Sbjct: 149 SEMKQLTSLNIRENEIGDEGAKFISEMKQLTSLDIR-GNRIGDEGAKYISEMKQLTSLN- 206

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
                                         I+  L+ ++G                    
Sbjct: 207 ------------------------------IYYTLIGIEG-------------------A 217

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           K +S +  L  L I  + +   G  ++  +++LTLL++    +       +S +  L  L
Sbjct: 218 KFISEMKQLTLLNIYYNLIGIEGAKFISEMKQLTLLDISNNEIGIEGAKFISEMKQLTSL 277

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           N+N  ++ D G +  S++  L  LN+ +N   D     +  +  L SL++ +  I DEG
Sbjct: 278 NINYNEIGDRGAKFISEMKQLTSLNISYNITGDRGAKFISEMKQLTSLDISNNRICDEG 336


>gi|195029827|ref|XP_001987773.1| GH22100 [Drosophila grimshawi]
 gi|193903773|gb|EDW02640.1| GH22100 [Drosophila grimshawi]
          Length = 550

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 114/371 (30%), Positives = 187/371 (50%), Gaps = 62/371 (16%)

Query: 7   SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
           S  +FN LV  R + +V + + R  +L+DL LG                  +L S++LSG
Sbjct: 214 SPSLFNCLV-RRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 255

Query: 67  S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQ 122
             +V D  L H    D  NL++LD + C QI+D  L  + + L NL +L       IT  
Sbjct: 256 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNT 315

Query: 123 GMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCITDSD 172
           G+   A GL  L  L+L  C  I   G+ +L G         ++LE L ++ C  ++D  
Sbjct: 316 GLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEFLGLQDCQRLSDEA 375

Query: 173 MKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           +  ++ GLT+LKS+ +S C  VTDSG+ +L  + KL  LNL  C       D++S +G  
Sbjct: 376 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDIGMA 428

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGI 288
           +        L++ G         +  L++ F ++I+D+ L H+ +GL  L SL+L+ C I
Sbjct: 429 Y--------LTEGG-------SGINCLDVSFCDKISDQALTHIAQGLFRLRSLSLNQCHI 473

Query: 289 GDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKL 344
            D+G++ +   L  L+ L +   +++   GL+ L+  L+NL++I+L   T +S   +  +
Sbjct: 474 TDQGMLKIAKSLHELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDII 533

Query: 345 AGLSSLKSLNL 355
             L  L+ LNL
Sbjct: 534 MKLPKLQKLNL 544



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 167/329 (50%), Gaps = 36/329 (10%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
           RG+  +  LS RR+      G+ A      +G  N+  ++L      H   V+L  L   
Sbjct: 224 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLG-----HAFSVDLPNL--- 275

Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           ++L++  C  ITD+ +  ++  L NL++L++  C  +T++G+  +  GL+KL  LNL  C
Sbjct: 276 KTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNTGLLLIAWGLKKLRHLNLRSC 335

Query: 215 PVTA-------ACLDSLSALGSLF--YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
              +       A     +A G+L   +L L  CQ LSD+     ++ + SLK +NL F  
Sbjct: 336 WHISDQGIGHLAGFSRETAEGNLQLEFLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 395

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRH 319
            +TD  L HL  +  LE LNL SC  I D G+  LT G   + CL++S   ++    L H
Sbjct: 396 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINCLDVSFCDKISDQALTH 455

Query: 320 LS-GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
           ++ GL  L S++L+   I+D  + K+A  L  L++LN+    +ITD GL  L   L+ L 
Sbjct: 456 IAQGLFRLRSLSLNQCHITDQGMLKIAKSLHELENLNIGQCSRITDKGLQTLAEDLSNLK 515

Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEI 403
            +DL+G  +++  G   +     L+ L +
Sbjct: 516 TIDLYGCTQLSSKGIDIIMKLPKLQKLNL 544



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 91/266 (34%), Positives = 139/266 (52%), Gaps = 26/266 (9%)

Query: 202 GLQKLTLLNLEGCPVTAACLDSLSA----LGSLFYLNLNRC-QLSDDGCEKFSK-IGSLK 255
           G+  LT LNL GC    A ++   A    L +L  L+L+ C Q++D    + ++ + +L+
Sbjct: 244 GVPALTSLNLSGC-FNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLE 302

Query: 256 VLNLG--FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLC--------NLKC 304
            L LG   N      L+   GL  L  LNL SC  I D+G+ +L G           L+ 
Sbjct: 303 TLELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEF 362

Query: 305 LELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQI 360
           L L D Q +    L H++ GLT+L+SINLSF   ++D  L+ LA +  L+ LNL +   I
Sbjct: 363 LGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNI 422

Query: 361 TDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI- 416
           +D G+A LT   +G+  LD+ F  +I+D    ++ +    LRSL +    +TD G+  I 
Sbjct: 423 SDIGMAYLTEGGSGINCLDVSFCDKISDQALTHIAQGLFRLRSLSLNQCHITDQGMLKIA 482

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELIS 442
           K L  L  LN+ Q   +TDK L+ ++
Sbjct: 483 KSLHELENLNIGQCSRITDKGLQTLA 508



 Score = 42.7 bits (99), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 102/219 (46%), Gaps = 33/219 (15%)

Query: 274 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 324
           G+  L SLNL  C       +G    V+L  L  L    C +++DT +G    +HL  L 
Sbjct: 244 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLKNLE 302

Query: 325 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLT----- 375
            LE     N++ TG+    L    GL  L+ LNL +   I+D G+  L   +  T     
Sbjct: 303 TLELGGCCNITNTGL----LLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNL 358

Query: 376 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 428
            L+  G     R++D    ++ +   +L+S  L  C   +TD+G+KH+  +  L  LNL 
Sbjct: 359 QLEFLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 417

Query: 429 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL 465
              N++D  +  L  G +G+  L+VS   +I+   L H+
Sbjct: 418 SCDNISDIGMAYLTEGGSGINCLDVSFCDKISDQALTHI 456


>gi|17549135|ref|NP_522475.1| GALA protein 1 [Ralstonia solanacearum GMI1000]
 gi|17431386|emb|CAD18065.1| lrr-gala family type III effector protein (gala 1) [Ralstonia
           solanacearum GMI1000]
          Length = 661

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 100/352 (28%), Positives = 167/352 (47%), Gaps = 3/352 (0%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
           + LT+L  R  N I   G +A A   ++  LD         G   L     L SL++ + 
Sbjct: 188 TTLTALDIR-GNGIGDAGAQALAANTSITSLDASFNDIGVAGARALAANTTLTSLDLGF- 245

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N I D  ++ L+  T+L SL +   ++ D+G A L     LT ++L    +     + L+
Sbjct: 246 NAIGDEGLQALATNTSLTSLTVGSCEIGDAGAAALANNTALTSVDLTCNHIGEEGAEGLA 305

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
           A   L  L+L R  +SD G    +   +L  L + FN+I       L   T L +L++  
Sbjct: 306 ANTVLTSLDLTRNSISDRGAAALAGNTTLTSLCVNFNDIYGRGARWLAENTTLTTLDISY 365

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
             IGD G + L     L+ L +   ++G  G R L+G T L ++++S   I +   + LA
Sbjct: 366 NPIGDWGALGLADNMTLRSLSVVAGRIGVEGARALAGNTTLTTLDISVNAIGNEGAQALA 425

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
             ++L +L+L + ++      A  + T L  LD+   RI  +GA  L +   L +L + G
Sbjct: 426 ANATLTTLSLRSCELRAAAAEAFKANTTLASLDIGENRIEAAGAQALADNTALTTLRVTG 485

Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
             +  AG + +    SLT LN+SQN ++     + ++  T L SL+VS++ I
Sbjct: 486 NQIGMAGAQALAANRSLTKLNISQN-DIRSAGAQALAANTSLTSLDVSSASI 536



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 116/407 (28%), Positives = 183/407 (44%), Gaps = 13/407 (3%)

Query: 30  DCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFN 89
           +  L  L LG +  + D+ +  +A+  +SL S+ +   ++ D+G   L + + L S+D  
Sbjct: 235 NTTLTSLDLG-FNAIGDEGLQALATN-TSLTSLTVGSCEIGDAGAAALANNTALTSVDLT 292

Query: 90  FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR---IHG 146
            C  I + G E L   + LTSL   RN +I+ +G  A AG   L  L    C     I+G
Sbjct: 293 -CNHIGEEGAEGLAANTVLTSLDLTRN-SISDRGAAALAGNTTLTSL----CVNFNDIYG 346

Query: 147 -GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
            G   L     L +L+I + N I D     L+    L+SL +   ++   G   L G   
Sbjct: 347 RGARWLAENTTLTTLDISY-NPIGDWGALGLADNMTLRSLSVVAGRIGVEGARALAGNTT 405

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
           LT L++    +      +L+A  +L  L+L  C+L     E F    +L  L++G N I 
Sbjct: 406 LTTLDISVNAIGNEGAQALAANATLTTLSLRSCELRAAAAEAFKANTTLASLDIGENRIE 465

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
                 L   T L +L +    IG  G   L    +L  L +S   + S+G + L+  T+
Sbjct: 466 AAGAQALADNTALTTLRVTGNQIGMAGAQALAANRSLTKLNISQNDIRSAGAQALAANTS 525

Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           L S+++S   I     + LA  +S+  LN++   I D G  AL +   LT L      I 
Sbjct: 526 LTSLDVSSASIGAAGAQALAANTSITWLNINDNHIGDAGAQALAAHPALTSLYACDNFIG 585

Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
            +G   L     L SL I G  + DAGVK +   ++LT L + +  +
Sbjct: 586 TAGVQALAANTRLTSLSIWGNRIGDAGVKALAANTTLTKLTIGKRVD 632



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 106/396 (26%), Positives = 177/396 (44%), Gaps = 4/396 (1%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L S+DL  + + D GL  L   ++L SL    C +I D G   L   + LTS+    N
Sbjct: 236 TTLTSLDLGFNAIGDEGLQALATNTSLTSLTVGSC-EIGDAGAAALANNTALTSVDLTCN 294

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           + I  +G +  A    L  LDL R +    G   L G   L SL + + N I     + L
Sbjct: 295 H-IGEEGAEGLAANTVLTSLDLTRNSISDRGAAALAGNTTLTSLCVNF-NDIYGRGARWL 352

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           +  T L +L IS + + D G   L     L  L++    +      +L+   +L  L+++
Sbjct: 353 AENTTLTTLDISYNPIGDWGALGLADNMTLRSLSVVAGRIGVEGARALAGNTTLTTLDIS 412

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
              + ++G +  +   +L  L+L   E+        K  T L SL++    I   G   L
Sbjct: 413 VNAIGNEGAQALAANATLTTLSLRSCELRAAAAEAFKANTTLASLDIGENRIEAAGAQAL 472

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
                L  L ++  Q+G +G + L+   +L  +N+S   I     + LA  +SL SL++ 
Sbjct: 473 ADNTALTTLRVTGNQIGMAGAQALAANRSLTKLNISQNDIRSAGAQALAANTSLTSLDVS 532

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
           +  I   G  AL + T +T L++    I D+GA  L     L SL  C   +  AGV+ +
Sbjct: 533 SASIGAAGAQALAANTSITWLNINDNHIGDAGAQALAAHPALTSLYACDNFIGTAGVQAL 592

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
              + LT L++  N  + D  ++ ++  T L  L +
Sbjct: 593 AANTRLTSLSIWGN-RIGDAGVKALAANTTLTKLTI 627


>gi|406831652|ref|ZP_11091246.1| hypothetical protein SpalD1_08439 [Schlesneria paludicola DSM
           18645]
          Length = 267

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 87/154 (56%)

Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
           P+ A  L  +  L  L  L L   Q++D   EK   + +L  L LG+++++D  + HLKG
Sbjct: 92  PLPAELLSEIGTLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKG 151

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           L+ LE + L    +GD+    L GL NLK + L+DT V  +G++ L  L +L+ + L+ T
Sbjct: 152 LSGLEWIFLIQTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGT 211

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
            +SD  L+ L  + +LK L++    I+D G AA+
Sbjct: 212 DVSDDGLKYLIEMKALKRLDIGNTLISDEGQAAI 245



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 79/153 (51%), Gaps = 3/153 (1%)

Query: 245 CEKFSKIGSLKVLNLGF---NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
            E  S+IG+LK L   +    ++TD  +  L G+ NL  L L    + D G+ +L GL  
Sbjct: 95  AELLSEIGTLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSG 154

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
           L+ + L  TQVG      L GL NL+SI L+ T ++D  ++KL  L  L+ L L    ++
Sbjct: 155 LEWIFLIQTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVS 214

Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
           D GL  L  +  L  LD+    I+D G A +R 
Sbjct: 215 DDGLKYLIEMKALKRLDIGNTLISDEGQAAIRK 247



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 78/151 (51%)

Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
           E L  +  L  L++L L    + D  +  L G+ NL  L L  +Q+   G+ HL GL+ L
Sbjct: 96  ELLSEIGTLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGL 155

Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
           E I L  T + D +   L GL +LKS+ L+   +TD G+  L +L  L +L L G  ++D
Sbjct: 156 EWIFLIQTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVSD 215

Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
            G  YL   K L+ L+I    ++D G   I+
Sbjct: 216 DGLKYLIEMKALKRLDIGNTLISDEGQAAIR 246



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 93/200 (46%), Gaps = 20/200 (10%)

Query: 112 SFRRNNAITAQGMKAFAGLINLV---KLDLERCTRIHGGLVN--------------LKGL 154
           SF+    I A+ +++  G +       + + +  R HGG+ +              L  +
Sbjct: 43  SFQDERRIAAK-IESLGGRVEFRFTGPMWVPKSIRSHGGVTSISLTTTDRPLPAELLSEI 101

Query: 155 MKLESLNIKWC--NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
             L+ L   W     +TD  ++ L G+ NL  L +  S+++D GI +LKGL  L  + L 
Sbjct: 102 GTLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGLEWIFLI 161

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
              V     D L  L +L  + LN   ++D G +K   +G L+ L L   +++D+ L +L
Sbjct: 162 QTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVSDDGLKYL 221

Query: 273 KGLTNLESLNLDSCGIGDEG 292
             +  L+ L++ +  I DEG
Sbjct: 222 IEMKALKRLDIGNTLISDEG 241



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 79/152 (51%), Gaps = 6/152 (3%)

Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
           S I  LK L+ L LL   G  VT   ++ L  + +L  L L   QLSD G E    +  L
Sbjct: 99  SEIGTLKELKTLWLL---GPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGL 155

Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
           + + L   ++ D+    L+GL NL+S+ L+   + D G+  L  L +L+ L L+ T V  
Sbjct: 156 EWIFLIQTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVSD 215

Query: 315 SGLRHLSGLTNLESINLSFTGISD---GSLRK 343
            GL++L  +  L+ +++  T ISD    ++RK
Sbjct: 216 DGLKYLIEMKALKRLDIGNTLISDEGQAAIRK 247



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 73/140 (52%), Gaps = 4/140 (2%)

Query: 329 INLSFTG--ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
           +   FTG      S+R   G++S+ SL    R +    L+ + +L  L  L L G ++TD
Sbjct: 61  VEFRFTGPMWVPKSIRSHGGVTSI-SLTTTDRPLPAELLSEIGTLKELKTLWLLGPQVTD 119

Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
                L   KNL  L +    L+D G++H+K LS L  + L Q   + DKT +++ GL  
Sbjct: 120 VAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGLEWIFLIQ-TQVGDKTCDILQGLPN 178

Query: 447 LVSLNVSNSRITSAGLRHLN 466
           L S+ ++++ +T AG++ L 
Sbjct: 179 LKSIALNDTNVTDAGVKKLK 198



 Score = 46.2 bits (108), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 3/138 (2%)

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
           L G  VTD  +  L    NL  L   +  Q+SD G+EHL+GLS L  + F     +  + 
Sbjct: 112 LLGPQVTDVAVEKLVGMKNLTGLYLGYS-QLSDRGIEHLKGLSGLEWI-FLIQTQVGDKT 169

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
                GL NL  + L        G+  LK L  L+ L +   + ++D  +K L  +  LK
Sbjct: 170 CDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTD-VSDDGLKYLIEMKALK 228

Query: 184 SLQISCSKVTDSGIAYLK 201
            L I  + ++D G A ++
Sbjct: 229 RLDIGNTLISDEGQAAIR 246


>gi|222630606|gb|EEE62738.1| hypothetical protein OsJ_17541 [Oryza sativa Japonica Group]
          Length = 973

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 153/325 (47%), Gaps = 27/325 (8%)

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPL 176
           A+ A+ +        L  L L  C  ++   V  L G+  L+ L++  C+ I+D+ +K +
Sbjct: 624 AVDAEWLAYLGAFRYLRVLKLADCKNVNSSAVWALSGMRTLKELDLSRCSKISDAGIKHI 683

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           + + +L+ L +S + +TD+G+  +  L  L LL+L G   T   L SL  L  L +L++ 
Sbjct: 684 ASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRFTDKALRSLQVLTQLEHLDIW 743

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEIT-------------DECLVH------LKGLTN 277
             +++++G        SL  LN+ +  +T               C +H       + L +
Sbjct: 744 GSEITNEGASVLIAFTSLSFLNISWTRVTCLPILPTLRCLNMSNCTIHSICNGEFQVLIH 803

Query: 278 LESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
           LE L + +   G  DE   ++    +L  L++S     SS L  L  + NLE ++LS++ 
Sbjct: 804 LEKLIISAASFGNIDEVFSSILP-SSLTYLDMSSCS--SSNLYFLGNMRNLEHLDLSYSR 860

Query: 336 ISDGSLRKLAGLS-SLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLR 393
           I   ++  +A +  +LK L+L   ++T   L  L  ++  LT L L   +I DS   Y+ 
Sbjct: 861 IISDAIEYIANIGMNLKFLSLSNSEVTSQALCVLAGTVPSLTTLSLAHTKIDDSALLYIS 920

Query: 394 NFKNLRSLEICGGGLTDAGVKHIKD 418
              +LR L +    + D  +K+ K+
Sbjct: 921 MMPSLRILNLSRTCIKDERIKYSKE 945



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 160/358 (44%), Gaps = 42/358 (11%)

Query: 39  GQYPGVNDKWMDVIASQGS------SLLSVDLSGSDVTDSG------------LIHLKDC 80
            +Y  V  +W+  +    S      S+  +DLSG    D+             ++ L DC
Sbjct: 588 ARYGYVPPRWLPALRPGRSLRVFQHSVEEIDLSGHIAVDAEWLAYLGAFRYLRVLKLADC 647

Query: 81  SN--------------LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
            N              L+ LD + C +ISD G++H+  + +L  L   +   +T  G+ A
Sbjct: 648 KNVNSSAVWALSGMRTLKELDLSRCSKISDAGIKHIASIESLEKLHVSQ-TGLTDNGVMA 706

Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
            + LINL  LDL         L +L+ L +LE L+I W + IT+     L   T+L  L 
Sbjct: 707 ISSLINLRLLDLGGVRFTDKALRSLQVLTQLEHLDI-WGSEITNEGASVLIAFTSLSFLN 765

Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
           IS ++VT      L  L  L  LN+  C + + C      L  L  L ++     +   E
Sbjct: 766 ISWTRVT-----CLPILPTLRCLNMSNCTIHSICNGEFQVLIHLEKLIISAASFGNID-E 819

Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL-CNLKCL 305
            FS I    +  L  +  +   L  L  + NLE L+L    I  + +  +  +  NLK L
Sbjct: 820 VFSSILPSSLTYLDMSSCSSSNLYFLGNMRNLEHLDLSYSRIISDAIEYIANIGMNLKFL 879

Query: 306 ELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
            LS+++V S  L  L+G + +L +++L+ T I D +L  ++ + SL+ LNL    I D
Sbjct: 880 SLSNSEVTSQALCVLAGTVPSLTTLSLAHTKIDDSALLYISMMPSLRILNLSRTCIKD 937



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 96/176 (54%), Gaps = 8/176 (4%)

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGL 317
           G   +  E L +L     L  L L  C  +    +  L+G+  LK L+LS  +++  +G+
Sbjct: 621 GHIAVDAEWLAYLGAFRYLRVLKLADCKNVNSSAVWALSGMRTLKELDLSRCSKISDAGI 680

Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
           +H++ + +LE +++S TG++D  +  ++ L +L+ L+L   + TD  L +L  LT L HL
Sbjct: 681 KHIASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRFTDKALRSLQVLTQLEHL 740

Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
           D++G+ IT+ GA+ L  F +L  L I    +T   +     L +L  LN+S NC +
Sbjct: 741 DIWGSEITNEGASVLIAFTSLSFLNISWTRVTCLPI-----LPTLRCLNMS-NCTI 790


>gi|397781344|ref|YP_006545817.1| Internalin-A [Methanoculleus bourgensis MS2]
 gi|396939846|emb|CCJ37101.1| Internalin-A [Methanoculleus bourgensis MS2]
          Length = 2759

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 89/254 (35%), Positives = 134/254 (52%), Gaps = 21/254 (8%)

Query: 137  DLERCTRIHG---GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
            D+   TR+     G+ +L GL    +L   + +    SD+ PL+GLTNL++L +  ++V+
Sbjct: 1506 DMATLTRLSAAGRGIRDLSGLEYAVNLQTLYISNNQISDLSPLAGLTNLQTLWLQDNQVS 1565

Query: 194  D-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
            D S +A L  LQ+L L   +   V+      L+ L +L  L L   Q+SD      + + 
Sbjct: 1566 DLSPLAGLTNLQRLWLNQNQIRDVS-----PLAGLTNLRELLLAVNQISD--LSPLAGLT 1618

Query: 253  SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
            +L  + L  N+I+D  L  L GLTNL  + L    I D  L  L GL NL  L++S  Q+
Sbjct: 1619 NLGYVQLYRNQISD--LSPLAGLTNLGYVQLYRNQISD--LSPLAGLTNLYFLDISYNQI 1674

Query: 313  GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
              S L  L+ LTNL  +++S+  ISD  +  LAGL+ L  L+LD  QI+D  ++ L  L 
Sbjct: 1675 --SDLSPLASLTNLYFLDISYNQISD--ISPLAGLTRLSRLSLDNNQISD--ISPLAGLI 1728

Query: 373  GLTHLDLFGARITD 386
             L  L+L   +I D
Sbjct: 1729 NLYVLNLNYNQIRD 1742



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 79/230 (34%), Positives = 115/230 (50%), Gaps = 23/230 (10%)

Query: 228  GSLFYLNLNRCQLSDDGCEKFSKIG---SLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
            G  + +NL    +S++     S +    +L+ L L  N+++D  L  L GLTNL+ L L+
Sbjct: 1525 GLEYAVNLQTLYISNNQISDLSPLAGLTNLQTLWLQDNQVSD--LSPLAGLTNLQRLWLN 1582

Query: 285  SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
               I D  +  L GL NL+ L L+  Q+  S L  L+GLTNL  + L    ISD  L  L
Sbjct: 1583 QNQIRD--VSPLAGLTNLRELLLAVNQI--SDLSPLAGLTNLGYVQLYRNQISD--LSPL 1636

Query: 345  AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
            AGL++L  + L   QI+D  L+ L  LT L  LD+   +I+D   + L +  NL  L+I 
Sbjct: 1637 AGLTNLGYVQLYRNQISD--LSPLAGLTNLYFLDISYNQISD--LSPLASLTNLYFLDI- 1691

Query: 405  GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
                       I D+S L  L      +L +  +  IS L GL++L V N
Sbjct: 1692 -------SYNQISDISPLAGLTRLSRLSLDNNQISDISPLAGLINLYVLN 1734



 Score = 49.7 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 49/150 (32%), Positives = 71/150 (47%), Gaps = 36/150 (24%)

Query: 93   QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
            QISD  L  L GL+NL  +   RN       +   AGL NL  LD+              
Sbjct: 1629 QISD--LSPLAGLTNLGYVQLYRNQI---SDLSPLAGLTNLYFLDISY------------ 1671

Query: 153  GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
                         N I  SD+ PL+ LTNL  L IS ++++D  I+ L GL +L+ L+L+
Sbjct: 1672 -------------NQI--SDLSPLASLTNLYFLDISYNQISD--ISPLAGLTRLSRLSLD 1714

Query: 213  GCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
               ++   +  L+ L +L+ LNLN  Q+ D
Sbjct: 1715 NNQISD--ISPLAGLINLYVLNLNYNQIRD 1742



 Score = 49.3 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 46/124 (37%), Positives = 65/124 (52%), Gaps = 10/124 (8%)

Query: 292 GLVNLTGL---CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
           G+ +L+GL    NL+ L L   +   S L  L+GLT+L++++L    ISD  L  LAGL+
Sbjct: 727 GIRDLSGLEYAVNLQHLYLQQNR-QISDLGPLAGLTDLQTLDLWNNQISD--LSPLAGLT 783

Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
           +L  L L + QI+D G   L  LT L  L L+  +I D G   L    NL  L +    +
Sbjct: 784 NLSVLLLGSNQISDIG--PLAGLTDLQRLHLYDNQIRDIGP--LAGLTNLWELRLYNNQI 839

Query: 409 TDAG 412
            D G
Sbjct: 840 RDIG 843



 Score = 46.2 bits (108), Expect = 0.032,   Method: Composition-based stats.
 Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 13/127 (10%)

Query: 122 QGMKAFAGL---INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           +G++  +GL   +NL  L L++  +I   L  L GL  L++L++ W N I  SD+ PL+G
Sbjct: 726 RGIRDLSGLEYAVNLQHLYLQQNRQI-SDLGPLAGLTDLQTLDL-WNNQI--SDLSPLAG 781

Query: 179 LTNLKSLQISCSKVTDSG-IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
           LTNL  L +  ++++D G +A L  LQ+L L + +        +  L+ L +L+ L L  
Sbjct: 782 LTNLSVLLLGSNQISDIGPLAGLTDLQRLHLYDNQ-----IRDIGPLAGLTNLWELRLYN 836

Query: 238 CQLSDDG 244
            Q+ D G
Sbjct: 837 NQIRDIG 843


>gi|320168558|gb|EFW45457.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 828

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 127/273 (46%), Gaps = 7/273 (2%)

Query: 116 NNAITAQGMKAFAGLINLVKLDL--ERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSD 172
           NN IT+    AF GL  L +L L   + + I      +L  L+ L      + N IT  +
Sbjct: 118 NNQITSISANAFVGLTALTQLLLYNNQISSIPASAWADLNTLINLS----LYQNRITSIN 173

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
              L+ LT LK+L +  +++T        GL  LT L ++  P+T+    + ++L +L  
Sbjct: 174 DASLTSLTALKTLILDNNQITSVPANAFAGLTSLTYLTVQSNPITSISAGAFASLSALTC 233

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           L L+  QL     + F+ + +L +LNL  N++T        GL  L  L L    I    
Sbjct: 234 LYLSSNQLVSIPADAFTDLTALTLLNLRDNQLTSISANAFTGLVALTQLQLPGNQITSIA 293

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
               TGL  L  L+L+  Q  S     L+GL  L ++ L    I+       AG+++L++
Sbjct: 294 ADAFTGLNALSFLDLTSNQFSSIPSSALTGLPALSTLILYTNSITSIPANAFAGMTALQA 353

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           + L   QIT    +A T LT +T+L L G  +T
Sbjct: 354 VVLSTNQITSIAASAFTGLTAVTYLVLDGNPVT 386



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 95/216 (43%), Gaps = 7/216 (3%)

Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS---CGIGDEGLVNLTGLCNLK 303
            F+ + +L  L+L  N++T     +   LT L+ L LD+     I     V LT L  L 
Sbjct: 80  AFTGLTALTTLHLYANQLTSIPAYNFTVLTALKDLRLDNNQITSISANAFVGLTALTQLL 139

Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
                 + + +S    L+ L NL       T I+D SL  L   ++LK+L LD  QIT  
Sbjct: 140 LYNNQISSIPASAWADLNTLINLSLYQNRITSINDASLTSL---TALKTLILDNNQITSV 196

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
              A   LT LT+L +    IT   A    +   L  L +    L         DL++LT
Sbjct: 197 PANAFAGLTSLTYLTVQSNPITSISAGAFASLSALTCLYLSSNQLVSIPADAFTDLTALT 256

Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
           LLNL  N  LT  +    +GL  L  L +  ++ITS
Sbjct: 257 LLNLRDN-QLTSISANAFTGLVALTQLQLPGNQITS 291



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 132/309 (42%), Gaps = 2/309 (0%)

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
             GL  L +L++ + N +T       + LT LK L++  +++T        GL  LT L 
Sbjct: 81  FTGLTALTTLHL-YANQLTSIPAYNFTVLTALKDLRLDNNQITSISANAFVGLTALTQLL 139

Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
           L    +++    + + L +L  L+L + +++       + + +LK L L  N+IT     
Sbjct: 140 LYNNQISSIPASAWADLNTLINLSLYQNRITSINDASLTSLTALKTLILDNNQITSVPAN 199

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
              GLT+L  L + S  I          L  L CL LS  Q+ S      + LT L  +N
Sbjct: 200 AFAGLTSLTYLTVQSNPITSISAGAFASLSALTCLYLSSNQLVSIPADAFTDLTALTLLN 259

Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
           L    ++  S     GL +L  L L   QIT     A T L  L+ LDL   + +   ++
Sbjct: 260 LRDNQLTSISANAFTGLVALTQLQLPGNQITSIAADAFTGLNALSFLDLTSNQFSSIPSS 319

Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
            L     L +L +    +T         +++L  + LS N  +T       +GLT +  L
Sbjct: 320 ALTGLPALSTLILYTNSITSIPANAFAGMTALQAVVLSTN-QITSIAASAFTGLTAVTYL 378

Query: 451 NVSNSRITS 459
            +  + +T+
Sbjct: 379 VLDGNPVTT 387



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 102/261 (39%), Gaps = 10/261 (3%)

Query: 67  SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
           S +  S    L    NL SL  N    I+D  L  L  L  L       NN IT+    A
Sbjct: 146 SSIPASAWADLNTLINL-SLYQNRITSINDASLTSLTALKTL----ILDNNQITSVPANA 200

Query: 127 FAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           FAGL +L  L ++    T I  G      L  L  L +   N +        + LT L  
Sbjct: 201 FAGLTSLTYLTVQSNPITSISAGA--FASLSALTCLYLS-SNQLVSIPADAFTDLTALTL 257

Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
           L +  +++T        GL  LT L L G  +T+   D+ + L +L +L+L   Q S   
Sbjct: 258 LNLRDNQLTSISANAFTGLVALTQLQLPGNQITSIAADAFTGLNALSFLDLTSNQFSSIP 317

Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
               + + +L  L L  N IT        G+T L+++ L +  I        TGL  +  
Sbjct: 318 SSALTGLPALSTLILYTNSITSIPANAFAGMTALQAVVLSTNQITSIAASAFTGLTAVTY 377

Query: 305 LELSDTQVGSSGLRHLSGLTN 325
           L L    V +       GL N
Sbjct: 378 LVLDGNPVTTLPPGLFQGLPN 398



 Score = 46.6 bits (109), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 2/151 (1%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           Q++        GL  LT L    N  IT+    AF GL  L  LDL            L 
Sbjct: 264 QLTSISANAFTGLVALTQLQLPGNQ-ITSIAADAFTGLNALSFLDLTSNQFSSIPSSALT 322

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
           GL  L +L I + N IT       +G+T L+++ +S +++T    +   GL  +T L L+
Sbjct: 323 GLPALSTL-ILYTNSITSIPANAFAGMTALQAVVLSTNQITSIAASAFTGLTAVTYLVLD 381

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
           G PVT         L +  YL++++  +S +
Sbjct: 382 GNPVTTLPPGLFQGLPNGLYLSVSQQYMSPN 412


>gi|325108218|ref|YP_004269286.1| hypothetical protein Plabr_1653 [Planctomyces brasiliensis DSM
           5305]
 gi|324968486|gb|ADY59264.1| hypothetical protein Plabr_1653 [Planctomyces brasiliensis DSM
           5305]
          Length = 1046

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 113/245 (46%), Gaps = 23/245 (9%)

Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
           ++ W NC  D D+  LS   +L+ + I+   +TD     L   Q+L  + L G  +T A 
Sbjct: 312 DLDWMNC-NDDDVALLSDCPSLRRVYIASDAITDRAAELLADTQQLRHIRLTGNQLTEAS 370

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
           L  LS           RCQ         ++I  +++   G   I +E    L     L  
Sbjct: 371 LRHLS-----------RCQ---------AEI--IELTGRGLKHIPNEIFSQLAKSETLRD 408

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           L L    + D+ L  L+ L +L+ L     Q+  +GL+ L+ +  L+ I L     +D +
Sbjct: 409 LRLWDTALTDDNLQALSSLTSLRVLCADGHQLTPAGLKQLASMPFLQEIRLPGANWTDET 468

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
           +  L  L SL+ ++L    IT+ GLA L ++T L  +DL G  IT+ G A L    +L+ 
Sbjct: 469 IALLQPLKSLRRIDLADSAITNAGLAELANITSLEWIDLQGTDITNQGVAALAALNDLQR 528

Query: 401 LEICG 405
           LE+ G
Sbjct: 529 LELRG 533



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 109/224 (48%), Gaps = 15/224 (6%)

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           +DD     S   SL+ + +  + ITD     L     L  + L    + +  L +L+  C
Sbjct: 319 NDDDVALLSDCPSLRRVYIASDAITDRAAELLADTQQLRHIRLTGNQLTEASLRHLS-RC 377

Query: 301 NLKCLELSDTQVGSSGLRH--------LSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
             + +EL+       GL+H        L+    L  + L  T ++D +L+ L+ L+SL+ 
Sbjct: 378 QAEIIELT-----GRGLKHIPNEIFSQLAKSETLRDLRLWDTALTDDNLQALSSLTSLRV 432

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
           L  D  Q+T  GL  L S+  L  + L GA  TD   A L+  K+LR +++    +T+AG
Sbjct: 433 LCADGHQLTPAGLKQLASMPFLQEIRLPGANWTDETIALLQPLKSLRRIDLADSAITNAG 492

Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
           +  + +++SL  ++L Q  ++T++ +  ++ L  L  L +  +R
Sbjct: 493 LAELANITSLEWIDL-QGTDITNQGVAALAALNDLQRLELRGTR 535



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 96/225 (42%), Gaps = 34/225 (15%)

Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
           G EK +    L  +N       D+ +  L    +L  + + S  I D     L     L+
Sbjct: 303 GVEKNTNPADLDWMNC-----NDDDVALLSDCPSLRRVYIASDAITDRAAELLADTQQLR 357

Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTG---ISDGSLRKLAGLSSLKSLNLDARQI 360
            + L+  Q+  + LRHLS     E I L+  G   I +    +LA   +L+ L L    +
Sbjct: 358 HIRLTGNQLTEASLRHLS-RCQAEIIELTGRGLKHIPNEIFSQLAKSETLRDLRLWDTAL 416

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD  L AL+SLT                        +LR L   G  LT AG+K +  + 
Sbjct: 417 TDDNLQALSSLT------------------------SLRVLCADGHQLTPAGLKQLASMP 452

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
            L  + L    N TD+T+ L+  L  L  +++++S IT+AGL  L
Sbjct: 453 FLQEIRLP-GANWTDETIALLQPLKSLRRIDLADSAITNAGLAEL 496



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 103/229 (44%), Gaps = 31/229 (13%)

Query: 50  DVIASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
           D I  + + LL+       + L+G+ +T++ L HL  C           I+++  GL+H+
Sbjct: 340 DAITDRAAELLADTQQLRHIRLTGNQLTEASLRHLSRCQAE-------IIELTGRGLKHI 392

Query: 103 RG--LSNLTSLSFRRN-----NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
                S L      R+      A+T   ++A + L +L  L  +       GL  L  + 
Sbjct: 393 PNEIFSQLAKSETLRDLRLWDTALTDDNLQALSSLTSLRVLCADGHQLTPAGLKQLASMP 452

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
            L+ + +   N  TD  +  L  L +L+ + ++ S +T++G+A L  +  L  ++L+G  
Sbjct: 453 FLQEIRLPGANW-TDETIALLQPLKSLRRIDLADSAITNAGLAELANITSLEWIDLQGTD 511

Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
           +T   + +L+AL      +L R +L    C +    GS   L+  F +I
Sbjct: 512 ITNQGVAALAALN-----DLQRLELRGTRCNR----GSWNTLSKPFPDI 551


>gi|426371210|ref|XP_004052544.1| PREDICTED: F-box/LRR-repeat protein 14 [Gorilla gorilla gorilla]
          Length = 307

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 97/270 (35%), Positives = 151/270 (55%), Gaps = 25/270 (9%)

Query: 222 DSLSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTN 277
           D    +GSL  LNL+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  
Sbjct: 17  DPEKEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQR 76

Query: 278 LESLNLDSC-GIGDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNL 326
           L+SLNL SC  + D G+ +L G+          L+ L L D Q +    L+H+S GLT L
Sbjct: 77  LKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGL 136

Query: 327 ESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FG 381
             +NLSF G ISD  L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F 
Sbjct: 137 RLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFC 195

Query: 382 ARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLE 439
            ++ D   AY+ +    L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LE
Sbjct: 196 DKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLE 255

Query: 440 LIS-GLTGLVSLNVSN-SRITSAGLRHLNH 467
           LI+  L+ L  +++   +RIT  GL  +  
Sbjct: 256 LIAEHLSQLTGIDLYGCTRITKRGLERITQ 285



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 159/311 (51%), Gaps = 53/311 (17%)

Query: 78  KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
           K+  +L++L+ + C QI+D  L  +                  AQ +K       L  L+
Sbjct: 20  KEIGSLRALNLSLCKQITDSSLGRI------------------AQYLKG------LEVLE 55

Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQI 187
           L  C+ I   G L+   GL +L+SLN++ C  ++D  +  L+G+T         L+ L +
Sbjct: 56  LGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTL 115

Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
             C K+TD  + ++ +GL  L LLNL  C  ++ A L  LS +GSL  LNL  C  +SD 
Sbjct: 116 QDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDT 175

Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-- 297
           G    + +GSL++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+G+  +   
Sbjct: 176 GIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQ 234

Query: 298 --GLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
             GL  L   +C+ ++D  +      HLS LT ++      T I+   L ++  L  LK 
Sbjct: 235 MHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG--CTRITKRGLERITQLPCLKV 291

Query: 353 LNLDARQITDT 363
           LNL   Q+TD+
Sbjct: 292 LNLGLWQMTDS 302



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           +TD  L H+ +  + L+ L+ +FC  ISD GL HL  + +L SL+ R  + I+  G+   
Sbjct: 121 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 180

Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           A G + L  LD+  C ++    +    +GL  L+SL++  C+   D   + +  +  L++
Sbjct: 181 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 240

Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           L I  C ++TD G+  + + L +LT ++L GC                        +++ 
Sbjct: 241 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 277

Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
            G E+ +++  LKVLNLG  ++TD
Sbjct: 278 RGLERITQLPCLKVLNLGLWQMTD 301


>gi|343414369|emb|CCD21014.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
          Length = 469

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 123/375 (32%), Positives = 196/375 (52%), Gaps = 40/375 (10%)

Query: 83  LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
           L+ L  + C  I+D  +  L  LS+L +L       IT   +   + L N V+LDL  CT
Sbjct: 45  LEKLYLSHCTGITD--VPPLSKLSSLRTLDISHCTGIT--DVSPLSKLNNFVQLDLSHCT 100

Query: 143 RIHGGLVNLKGLMKLESLNI-KWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL 200
               G+ ++  L  L SL +  + +C   +D+ PLS L++L++L +S C+ +    ++ L
Sbjct: 101 ----GITDVSPLSVLSSLRMLFFSHCTGITDVSPLSVLSSLRTLDLSYCTGI--KHVSPL 154

Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL 259
             L  L  L+L  C      +  LS L SL  L+L+ C  +  +     SK+ SL+ L+L
Sbjct: 155 SKLSSLEKLDLSHCTAIKH-VSPLSKLSSLCTLDLSYCTGIKHES--PLSKLSSLRTLDL 211

Query: 260 GF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
                ITD  +  L  L++L +L+L  C GI D  +  L+ L +L+ L+LS    G + +
Sbjct: 212 SHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCT-GITDV 266

Query: 318 RHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLT 375
             LS L++L +++LS  TGI+D S   L+ LSSL++L+L     ITD  ++ L+ L+ L 
Sbjct: 267 SPLSKLSSLRTLDLSHCTGITDVS--PLSELSSLRTLDLSHCTGITD--VSPLSELSSLR 322

Query: 376 HLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
            L L     ITD   + L    +LR L++    G+TD  V  + +LSSL +L LS    +
Sbjct: 323 MLYLSHCTGITD--VSPLSELSSLRMLDLSHCTGITD--VSPLSELSSLHILGLSHCTGI 378

Query: 434 TDKTLELISGLTGLV 448
           TD     +S LT ++
Sbjct: 379 TD-----VSPLTTII 388



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 126/380 (33%), Positives = 195/380 (51%), Gaps = 42/380 (11%)

Query: 83  LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
           LQ LD + C  ++D  +  L  +  L  L       IT   +   + L +L  LD+  CT
Sbjct: 22  LQKLDLSHCTGVTD--VSPLSKMIGLEKLYLSHCTGIT--DVPPLSKLSSLRTLDISHCT 77

Query: 143 RIHGGLVNLKGLMKLES---LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIA 198
               G+ ++  L KL +   L++  C  ITD  + PLS L++L+ L  S C+ +TD  ++
Sbjct: 78  ----GITDVSPLSKLNNFVQLDLSHCTGITD--VSPLSVLSSLRMLFFSHCTGITD--VS 129

Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
            L  L  L  L+L  C      +  LS L SL  L+L+ C  +       SK+ SL  L+
Sbjct: 130 PLSVLSSLRTLDLSYC-TGIKHVSPLSKLSSLEKLDLSHCT-AIKHVSPLSKLSSLCTLD 187

Query: 259 LGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
           L +   I  E    L  L++L +L+L  C GI D  +  L+ L +L+ L+LS    G + 
Sbjct: 188 LSYCTGIKHE--SPLSKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCT-GITD 242

Query: 317 LRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGL 374
           +  LS L++L +++LS  TGI+D S   L+ LSSL++L+L     ITD  ++ L+ L+ L
Sbjct: 243 VSPLSELSSLRTLDLSHCTGITDVS--PLSKLSSLRTLDLSHCTGITD--VSPLSELSSL 298

Query: 375 THLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCN 432
             LDL     ITD   + L    +LR L +    G+TD  V  + +LSSL +L+LS    
Sbjct: 299 RTLDLSHCTGITD--VSPLSELSSLRMLYLSHCTGITD--VSPLSELSSLRMLDLSHCTG 354

Query: 433 LTDKTLELISGLTGLVSLNV 452
           +TD     +S L+ L SL++
Sbjct: 355 ITD-----VSPLSELSSLHI 369



 Score = 42.7 bits (99), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 113/233 (48%), Gaps = 20/233 (8%)

Query: 32  ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
           +L+ L L    G+ D       S+ SSL ++DLS  + +TD     L + S+L++LD + 
Sbjct: 251 SLRTLDLSHCTGITDVSP---LSKLSSLRTLDLSHCTGITDVS--PLSELSSLRTLDLSH 305

Query: 91  CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
           C  I+D  +  L  LS+L  L       IT   +   + L +L  LDL  CT    G+ +
Sbjct: 306 CTGITD--VSPLSELSSLRMLYLSHCTGIT--DVSPLSELSSLRMLDLSHCT----GITD 357

Query: 151 LKGLMKLESLNI-KWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTL 208
           +  L +L SL+I    +C   +D+ PL+ +   + L +S C+ +TD  ++ L  L  L  
Sbjct: 358 VSPLSELSSLHILGLSHCTGITDVSPLTTIIGFEKLYLSNCTGITD--VSPLSKLSSLRS 415

Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
           L+L  C      +  LS L SL  L+++ C    D     SK+ SL +L L  
Sbjct: 416 LDLSHC-TGITDVSPLSELSSLRTLDISHCTGITD-VSPLSKLSSLHILGLSH 466


>gi|300697280|ref|YP_003747941.1| leucine-rich-repeat type III effector protein (GALA2) [Ralstonia
            solanacearum CFBP2957]
 gi|299074004|emb|CBJ53541.1| leucine-rich-repeat type III effector protein (GALA2) [Ralstonia
            solanacearum CFBP2957]
          Length = 1051

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 104/354 (29%), Positives = 158/354 (44%), Gaps = 7/354 (1%)

Query: 44   VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
            + D+ +  +AS  +SL S++LSG+ + D+G   L   + L SL+ +    I D G++ L 
Sbjct: 685  IGDREVQALASS-ASLTSLNLSGNRIGDAGAQALGRNTVLTSLNVS-ANPIGDTGVQALA 742

Query: 104  GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
            G  +LTSL  R    I   G+ A A    L  LD+            L     L SL   
Sbjct: 743  GSRSLTSLELR-GIRIGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQTLTSLKAN 801

Query: 164  WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
             C  +T+   + L+ + +L++L++  + + D+G+  +     L  LNL   P+T   L  
Sbjct: 802  DCG-LTNGMAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRP 860

Query: 224  LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
            L    +L  L+++R    D G    SK  +L  L LGFN I       L     L SL+L
Sbjct: 861  LELSRTLTSLDVSRIGCGDRGALLLSKNRALTSLKLGFNGIGSAGAQGLTANRTLISLDL 920

Query: 284  DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
                I       L     L  L +SD ++       L+    L ++++S   +S  + R 
Sbjct: 921  RGNTIDVAAATALAHTGRLGSLNVSDCKLDDEAASALAESLTLTALDVSMNRLSSQAARA 980

Query: 344  LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
            LAG ++L SLN+    I   G  AL   T LT LD   AR  D G A  R  +N
Sbjct: 981  LAGNATLTSLNISHNHIGPDGAQALAESTSLTFLD---ARANDIGEAGARALEN 1031



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 172/377 (45%), Gaps = 7/377 (1%)

Query: 57   SSLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
             S+  +DLSG   + V+++GL  L     L SLD +   +I D  ++ L   ++LTSL+ 
Sbjct: 647  PSVRHLDLSGCTGAAVSEAGLADLAR-RPLASLDLSRT-RIGDREVQALASSASLTSLNL 704

Query: 114  RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
               N I   G +A      L  L++        G+  L G   L SL ++    I ++ +
Sbjct: 705  S-GNRIGDAGAQALGRNTVLTSLNVSANPIGDTGVQALAGSRSLTSLELRGIR-IGEAGI 762

Query: 174  KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
              L+  T L+SL IS + +++   A L   Q LT L    C +T      L+ + SL  L
Sbjct: 763  AALASNTVLRSLDISSNDLSEQSAAELARNQTLTSLKANDCGLTNGMAQQLARIRSLRTL 822

Query: 234  NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
             +    + D G    ++  SL+ LNL  N IT + L  L+    L SL++   G GD G 
Sbjct: 823  EVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRPLELSRTLTSLDVSRIGCGDRGA 882

Query: 294  VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
            + L+    L  L+L    +GS+G + L+    L S++L    I   +   LA    L SL
Sbjct: 883  LLLSKNRALTSLKLGFNGIGSAGAQGLTANRTLISLDLRGNTIDVAAATALAHTGRLGSL 942

Query: 354  NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
            N+   ++ D   +AL     LT LD+   R++   A  L     L SL I    +   G 
Sbjct: 943  NVSDCKLDDEAASALAESLTLTALDVSMNRLSSQAARALAGNATLTSLNISHNHIGPDGA 1002

Query: 414  KHIKDLSSLTLLNLSQN 430
            + + + +SLT L+   N
Sbjct: 1003 QALAESTSLTFLDARAN 1019



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 100/192 (52%), Gaps = 1/192 (0%)

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           L SL+L    IGD  +  L    +L  L LS  ++G +G + L   T L S+N+S   I 
Sbjct: 675 LASLDLSRTRIGDREVQALASSASLTSLNLSGNRIGDAGAQALGRNTVLTSLNVSANPIG 734

Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
           D  ++ LAG  SL SL L   +I + G+AAL S T L  LD+    +++  AA L   + 
Sbjct: 735 DTGVQALAGSRSLTSLELRGIRIGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQT 794

Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
           L SL+    GLT+   + +  + SL  L +  N ++ D  +  I+    L +LN+S++ I
Sbjct: 795 LTSLKANDCGLTNGMAQQLARIRSLRTLEVGSN-SIGDTGVLAIARNASLRTLNLSHNPI 853

Query: 458 TSAGLRHLNHAR 469
           T  GLR L  +R
Sbjct: 854 TLQGLRPLELSR 865



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 139/320 (43%), Gaps = 30/320 (9%)

Query: 14   LVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSG 73
            L  SR LT + L   R              + +  +  +AS  + L S+D+S +D+++  
Sbjct: 741  LAGSRSLTSLELRGIR--------------IGEAGIAALASN-TVLRSLDISSNDLSEQS 785

Query: 74   LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
               L     L SL  N C  +++G  + L  + +L +L    +N+I   G+ A A   +L
Sbjct: 786  AAELARNQTLTSLKANDC-GLTNGMAQQLARIRSLRTLEVG-SNSIGDTGVLAIARNASL 843

Query: 134  VKLDLERCTRIHGGLVNLKGLMKLE------SLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
              L+L          + L+GL  LE      SL++    C  D     LS    L SL++
Sbjct: 844  RTLNLSHNP------ITLQGLRPLELSRTLTSLDVSRIGC-GDRGALLLSKNRALTSLKL 896

Query: 188  SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
              + +  +G   L   + L  L+L G  +  A   +L+  G L  LN++ C+L D+    
Sbjct: 897  GFNGIGSAGAQGLTANRTLISLDLRGNTIDVAAATALAHTGRLGSLNVSDCKLDDEAASA 956

Query: 248  FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
             ++  +L  L++  N ++ +    L G   L SLN+    IG +G   L    +L  L+ 
Sbjct: 957  LAESLTLTALDVSMNRLSSQAARALAGNATLTSLNISHNHIGPDGAQALAESTSLTFLDA 1016

Query: 308  SDTQVGSSGLRHLSGLTNLE 327
                +G +G R L   T ++
Sbjct: 1017 RANDIGEAGARALENNTRMQ 1036



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/194 (36%), Positives = 97/194 (50%), Gaps = 25/194 (12%)

Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
           + E + +L GL  LESLN+    IGD G   L    +L+ L  ++  +G++G R L+   
Sbjct: 143 SSEAIAYLAGLP-LESLNVAGADIGDGGARLLAANPSLRALNAANGGIGAAGARALAESP 201

Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
            L S++LS  GI D   R LAG  SL +L +    +TD G  AL     LT LDL G  I
Sbjct: 202 VLTSLDLSQNGIGDEGARALAGSRSLTNLAVLNCLVTDVGARALAGNRTLTALDL-GNLI 260

Query: 385 TDSG-----AAYLRNF--------------KNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
           T++G     AAY R                ++L SL I G    DAGV+ +   S+LT L
Sbjct: 261 TETGNELEQAAYDRTANEITAQGAWALAQNRSLTSLSIQGNLCGDAGVQALAGSSTLTSL 320

Query: 426 NLSQNCNLTDKTLE 439
           N++     TD TLE
Sbjct: 321 NVA----YTDMTLE 330



 Score = 46.2 bits (108), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 117/276 (42%), Gaps = 36/276 (13%)

Query: 200 LKGLQKLTLLNLEGCPVT------AACLDSLSALGSLFYL--------NLNRCQLSDDGC 245
           LKG   LTL +L+  P T      +AC  S  +  ++ YL        N+    + D G 
Sbjct: 113 LKG--NLTLADLKALPATLRHLDLSACTGSAKSSEAIAYLAGLPLESLNVAGADIGDGGA 170

Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG---LCNL 302
              +   SL+ LN     I       L     L SL+L   GIGDEG   L G   L NL
Sbjct: 171 RLLAANPSLRALNAANGGIGAAGARALAESPVLTSLDLSQNGIGDEGARALAGSRSLTNL 230

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINL-SFTG--------------ISDGSLRKLAGL 347
             L    T VG+  L     LT L+  NL + TG              I+      LA  
Sbjct: 231 AVLNCLVTDVGARALAGNRTLTALDLGNLITETGNELEQAAYDRTANEITAQGAWALAQN 290

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI-CGG 406
            SL SL++      D G+ AL   + LT L++    +T   A  L     L SL +    
Sbjct: 291 RSLTSLSIQGNLCGDAGVQALAGSSTLTSLNVAYTDMTLESAKELARNPVLTSLSVRWNY 350

Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
           GL DAGV  +    SLTLL+ +++  ++++T  ++S
Sbjct: 351 GLGDAGVVELAKSPSLTLLD-ARSTGMSERTALVLS 385


>gi|422811192|ref|ZP_16859602.1| internalin P4 [Listeria monocytogenes FSL J1-208]
 gi|378750825|gb|EHY61417.1| internalin P4 [Listeria monocytogenes FSL J1-208]
          Length = 776

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 154/338 (45%), Gaps = 64/338 (18%)

Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
           + L  + N+++ S   +N  + +G++    L NL +L LE        L  L GL+KLE 
Sbjct: 72  DELNSVENISADSGLYDNVASIEGVQY---LNNLTELRLENVDNSVSDLRPLSGLIKLEV 128

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
           ++         SD+ PLS L NL SL ++ ++++D  I+ L     LT LN+    +  +
Sbjct: 129 ISFYHSQI---SDLSPLSELINLTSLTLNDNQISD--ISPLANSTNLTTLNMSSNKI--S 181

Query: 220 CLDSLSALGSLFYLNLNRCQLSD--------------DGCEKFSKIGSLK------VLNL 259
            L  LS L +L  L+    Q+SD                  K S I  L        LN+
Sbjct: 182 DLSPLSNLSNLNKLDFRENQISDLSPLSGLINLTSLTINANKISDISPLANLTNLTTLNM 241

Query: 260 GFNEITDEC--------------------LVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
           G N+ITD                      +  L  LTNL SL++D   I D  L +L+ L
Sbjct: 242 GINQITDLSSLSGLISLVDLHLSVNQITDISALSDLTNLRSLDIDHNQIID--LSSLSNL 299

Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
            NLK L L D Q+  S +  LSGL NL  + +    + D  +  L+ L++L+ L +D+ Q
Sbjct: 300 TNLKRLHLVDNQI--SSITPLSGLINLTDLEIRINQVKD--VSPLSSLANLEMLYVDSNQ 355

Query: 360 ITDTGLAALTSLTGLTHLDLFGAR---ITDSGAAYLRN 394
           I+D     ++SL  L +L LF A    I +    Y +N
Sbjct: 356 ISD-----ISSLKNLKNLVLFSAHSQTIVNKPVNYQKN 388



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/255 (34%), Positives = 128/255 (50%), Gaps = 25/255 (9%)

Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
           G+ YL  L +L L N++      + L  LS L  L  ++    Q+SD      S++ +L 
Sbjct: 95  GVQYLNNLTELRLENVDNS---VSDLRPLSGLIKLEVISFYHSQISD--LSPLSELINLT 149

Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
            L L  N+I+D  +  L   TNL +LN+ S  I D  L  L+ L NL  L+  + Q+  S
Sbjct: 150 SLTLNDNQISD--ISPLANSTNLTTLNMSSNKISD--LSPLSNLSNLNKLDFRENQI--S 203

Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
            L  LSGL NL S+ ++   ISD  +  LA L++L +LN+   QITD    +        
Sbjct: 204 DLSPLSGLINLTSLTINANKISD--ISPLANLTNLTTLNMGINQITDLSSLSGLISLVDL 261

Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
           HL +   +ITD  A  L +  NLRSL+I            I DLSSL+ L   +  +L D
Sbjct: 262 HLSV--NQITDISA--LSDLTNLRSLDIDHN--------QIIDLSSLSNLTNLKRLHLVD 309

Query: 436 KTLELISGLTGLVSL 450
             +  I+ L+GL++L
Sbjct: 310 NQISSITPLSGLINL 324



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 103/194 (53%), Gaps = 30/194 (15%)

Query: 275 LTNLESLNLDSCGIGD-----EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
           L ++E+++ DS G+ D     EG+  L  L  L+ LE  D  V  S LR LSGL  LE I
Sbjct: 74  LNSVENISADS-GLYDNVASIEGVQYLNNLTELR-LENVDNSV--SDLRPLSGLIKLEVI 129

Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
           +   + ISD  L  L+ L +L SL L+  QI+D  ++ L + T LT L++   +I+D   
Sbjct: 130 SFYHSQISD--LSPLSELINLTSLTLNDNQISD--ISPLANSTNLTTLNMSSNKISD--L 183

Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT-LLNLSQ---NCN-LTDKTLELISGL 444
           + L N  NL  L        D     I DLS L+ L+NL+    N N ++D  +  ++ L
Sbjct: 184 SPLSNLSNLNKL--------DFRENQISDLSPLSGLINLTSLTINANKISD--ISPLANL 233

Query: 445 TGLVSLNVSNSRIT 458
           T L +LN+  ++IT
Sbjct: 234 TNLTTLNMGINQIT 247



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 115/223 (51%), Gaps = 23/223 (10%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L ++++S + ++D  L  L + SNL  LDF    QISD  L  L GL NLTSL+    
Sbjct: 168 TNLTTLNMSSNKISD--LSPLSNLSNLNKLDFREN-QISD--LSPLSGLINLTSLTI--- 219

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           NA     +   A L NL  L++    +I         +  ++ L++   N IT  D+  L
Sbjct: 220 NANKISDISPLANLTNLTTLNM-GINQITDLSSLSGLISLVD-LHLS-VNQIT--DISAL 274

Query: 177 SGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           S LTNL+SL I  +++ D S ++ L  L++L L++ +   +T      LS L +L  L +
Sbjct: 275 SDLTNLRSLDIDHNQIIDLSSLSNLTNLKRLHLVDNQISSITP-----LSGLINLTDLEI 329

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
              Q+ D      S + +L++L +  N+I+D  +  LK L NL
Sbjct: 330 RINQVKD--VSPLSSLANLEMLYVDSNQISD--ISSLKNLKNL 368


>gi|219821342|gb|ACL37806.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 125/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 40  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 94  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             LTGL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 253 SPLTGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 368

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 118/240 (49%), Gaps = 20/240 (8%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  L+NL 
Sbjct: 32  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 88  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 251


>gi|301617436|ref|XP_002938142.1| PREDICTED: f-box/LRR-repeat protein 14-like [Xenopus (Silurana)
           tropicalis]
          Length = 400

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 103/295 (34%), Positives = 161/295 (54%), Gaps = 28/295 (9%)

Query: 200 LKGLQKLTLLNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSL 254
           ++GL  +  LNL GC  +T   L    +  +GSL  LNL+ C Q++D    + ++ +  L
Sbjct: 86  IQGLPDIESLNLSGCYNLTDNGLGHAFVQEIGSLRSLNLSLCKQVTDSSLGRIAQYLKGL 145

Query: 255 KVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN--------LK 303
           +VL LG    IT+  L+ +  GL  L+SLNL SC  + D G+ +L G+          L+
Sbjct: 146 QVLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLGLE 205

Query: 304 CLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQ 359
            L L D Q +    L+H+S GL  L  +NLSF G ISD  L  L+ +  L+SLNL +   
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLQGLRVLNLSFCGGISDAGLLHLSHMGGLRSLNLRSCDN 265

Query: 360 ITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-K 414
           I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +    L+SL +C   ++D G+ +
Sbjct: 266 ISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLYGLKSLSLCSCHISDDGINR 324

Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLNH 467
            ++ +  L  LN+ Q   +TDK LELI+  L+ L  +++   +RIT  GL  +  
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKKGLERITQ 379



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 165/311 (53%), Gaps = 32/311 (10%)

Query: 81  SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLD 137
            +++SL+ + C  ++D GL H  ++ + +L SL+      +T   +   A  +  L  L+
Sbjct: 90  PDIESLNLSGCYNLTDNGLGHAFVQEIGSLRSLNLSLCKQVTDSSLGRIAQYLKGLQVLE 149

Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQI 187
           L  CT I   G L+   GL  L+SLN++ C  ++D  +  L+G+T         L+ L +
Sbjct: 150 LGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLGLEQLTL 209

Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDD 243
             C K+TD  + ++ +GLQ L +LNL  C  ++ A L  LS +G L  LNL  C  +SD 
Sbjct: 210 QDCQKLTDLSLKHISRGLQGLRVLNLSFCGGISDAGLLHLSHMGGLRSLNLRSCDNISDT 269

Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL----VN 295
           G    + +GSL++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+G+      
Sbjct: 270 GIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLYGLKSLSLCSCHISDDGINRMVRQ 328

Query: 296 LTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
           + GL  L   +C+ ++D  +      HLS LT ++      T I+   L ++  L  LK 
Sbjct: 329 MHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKKGLERITQLPCLKV 385

Query: 353 LNLDARQITDT 363
           LNL   Q+T++
Sbjct: 386 LNLGLWQMTES 396



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 154/306 (50%), Gaps = 32/306 (10%)

Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
           ++GL  +ESLN+  C  +TD+ +    +  + +L+SL +S C +VTDS +     YLKGL
Sbjct: 86  IQGLPDIESLNLSGCYNLTDNGLGHAFVQEIGSLRSLNLSLCKQVTDSSLGRIAQYLKGL 145

Query: 204 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQLSDD-------GCEKFSKIGSL 254
           Q   +L L GC        L     L  L  LNL  C+   D       G  + +  G L
Sbjct: 146 Q---VLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCL 202

Query: 255 KVLNLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-S 308
            +  L   +   +TD  L H+ +GL  L  LNL  C GI D GL++L+ +  L+ L L S
Sbjct: 203 GLEQLTLQDCQKLTDLSLKHISRGLQGLRVLNLSFCGGISDAGLLHLSHMGGLRSLNLRS 262

Query: 309 DTQVGSSGLRHLS-GLTNLESINLSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGL 365
              +  +G+ HL+ G   L  +++SF   + D SL  +A GL  LKSL+L +  I+D G+
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLYGLKSLSLCSCHISDDGI 322

Query: 366 AALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSS 421
             +   + GL  L++    RITD G   +  +   L  +++ G   +T  G++ I  L  
Sbjct: 323 NRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKKGLERITQLPC 382

Query: 422 LTLLNL 427
           L +LNL
Sbjct: 383 LKVLNL 388



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 140/290 (48%), Gaps = 41/290 (14%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
           V D  +  IA     L  ++L G +++T++GL+ +      L+SL+   C  +SD G+ H
Sbjct: 130 VTDSSLGRIAQYLKGLQVLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGH 189

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL------KGLM 155
           L G++                   A  G + L +L L+ C +    L +L      +GL 
Sbjct: 190 LAGMTR-----------------SAAEGCLGLEQLTLQDCQK----LTDLSLKHISRGLQ 228

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEG 213
            L  LN+ +C  I+D+ +  LS +  L+SL + SC  ++D+GI +L  G  +L+ L++  
Sbjct: 229 GLRVLNLSFCGGISDAGLLHLSHMGGLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSF 288

Query: 214 CPVTAACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDE 267
           C        SL+ +    Y    L+L  C +SDDG  +  + +  L+ LN+G    ITD+
Sbjct: 289 CDKVGD--QSLAYIAQGLYGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDK 346

Query: 268 CLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 315
            L  + + L+ L  ++L  C  I  +GL  +T L  LK L L   Q+  S
Sbjct: 347 GLELIAEHLSQLTGIDLYGCTRITKKGLERITQLPCLKVLNLGLWQMTES 396


>gi|28210241|ref|NP_781185.1| internalin A-like protein/ S-layer protein [Clostridium tetani E88]
 gi|28202677|gb|AAO35122.1| internalin A-like protein/putative S-layer protein [Clostridium
           tetani E88]
          Length = 695

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 111/361 (30%), Positives = 174/361 (48%), Gaps = 47/361 (13%)

Query: 72  SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
           S L  LK   NL++L   +  +     LE LRGL+NL +L     N      +     LI
Sbjct: 372 SNLEPLKSMDNLENL---YLTKTKVVSLEPLRGLTNLKALVI---NETNVSDLTPIKNLI 425

Query: 132 NLVKLDLERCTRIHGGLVNLKG---LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
           NL     ER T     LV+L G   L+ LESL+I   N    S++  +  LTNLKSL I+
Sbjct: 426 NL-----ERLTLGDNKLVSLAGIENLVNLESLDINKNNV---SNLASIRDLTNLKSLNIN 477

Query: 189 CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
            + VTD S +  LK L++++ LN  G       L +L+AL  L ++      L+      
Sbjct: 478 ENNVTDLSVVTNLKNLERIS-LNKNGV----TSLGALAALPELEWVTAKENGLT------ 526

Query: 248 FSKIG-----SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
            S +G      LK L L  N+I+D  L  L  LT+LE+L+L +  I D  + +L+ L  +
Sbjct: 527 -STVGLQNALKLKELFLDSNQISD--LSSLANLTSLETLSLRTNNISD--VSSLSDLTRM 581

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
           K L L    +GS  +  L+ + NL  + +    ISD S   +A + +LK+L++    +++
Sbjct: 582 KNLYLHKNNIGS--IAPLASMENLTRLYVGKNNISDIS--AVANMKNLKTLSIGENMVSN 637

Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
            G   ++ L  L  LD+    ITD+  A      NL+ + +    + +A +    D  ++
Sbjct: 638 IG--PVSGLQSLETLDVADNFITDASPAI--GLPNLKDIMLLNTKVPEAQINAFPDSVTV 693

Query: 423 T 423
           T
Sbjct: 694 T 694



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 177/357 (49%), Gaps = 45/357 (12%)

Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
            AG+ NL+  DL         + NL+ L  +++L   +        ++PL GLTNLK+L 
Sbjct: 352 LAGIENLI--DLRVLNAGKNNISNLEPLKSMDNLENLYLTKTKVVSLEPLRGLTNLKALV 409

Query: 187 ISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
           I+ + V+D + I  L  L++LTL   +   V+ A +++L  L S   L++N+  +S+   
Sbjct: 410 INETNVSDLTPIKNLINLERLTL--GDNKLVSLAGIENLVNLES---LDINKNNVSN--L 462

Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI----------------- 288
                + +LK LN+  N +TD  +V    L NLE ++L+  G+                 
Sbjct: 463 ASIRDLTNLKSLNINENNVTDLSVVT--NLKNLERISLNKNGVTSLGALAALPELEWVTA 520

Query: 289 GDEGLVNLTGLCN---LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
            + GL +  GL N   LK L L   Q+  S L  L+ LT+LE+++L    ISD S   L+
Sbjct: 521 KENGLTSTVGLQNALKLKELFLDSNQI--SDLSSLANLTSLETLSLRTNNISDVS--SLS 576

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
            L+ +K+L L    I    +A L S+  LT L +    I+D  A  + N KNL++L I  
Sbjct: 577 DLTRMKNLYLHKNNI--GSIAPLASMENLTRLYVGKNNISDISA--VANMKNLKTLSIGE 632

Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
             +++ G   +  L SL  L+++ N  +TD +  +  GL  L  + + N+++  A +
Sbjct: 633 NMVSNIG--PVSGLQSLETLDVADNF-ITDASPAI--GLPNLKDIMLLNTKVPEAQI 684



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 117/432 (27%), Positives = 205/432 (47%), Gaps = 54/432 (12%)

Query: 57  SSLLSVDLSGSDVTD----SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
            +L S+DLS +++ D    SGL +LK+ +  ++       +I+D  ++ L GL NL  L+
Sbjct: 103 ENLQSLDLSNNEIKDLGSLSGLKYLKELTLYKN-------KITD--VKALDGLKNLEKLN 153

Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCT-------------RI----HGGLVNLKGLM 155
            R N     +G+K   GL  L +LDL + +             RI      G+ N + L 
Sbjct: 154 LRDNKVKNIEGLK---GLEKLRELDLGKNSVFQPKPLKDLKNLRILNLESNGIGNAEDLE 210

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
           +L+ +     +  T  D++PL  LTN+  L +  + VT   I  LK +  L  LN+    
Sbjct: 211 ELKQVEHLILSNNTVDDVEPLLTLTNVNKLYLDDNPVT--HIGKLKDMTNLKRLNINNDS 268

Query: 216 VTA-ACLDSLSALGSLFYLN----LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
           +   A L     L  L + N    L+  +L+D   +   ++      NL F  I D+   
Sbjct: 269 IEDLAELKKFKNLQWLKFKNQEMVLDNKKLNDLLVDPNKEV-KFADKNLEF-AIRDKIEK 326

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE-LSDTQVGSSGLRHLSGLTNLESI 329
               +   +   +    + D+ + NL G+ NL  L  L+  +   S L  L  + NLE++
Sbjct: 327 PKGAIKKADLQRVTQLDLWDKNVTNLAGIENLIDLRVLNAGKNNISNLEPLKSMDNLENL 386

Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
            L+ T +   SL  L GL++LK+L ++   ++D  L  + +L  L  L L   ++     
Sbjct: 387 YLTKTKVV--SLEPLRGLTNLKALVINETNVSD--LTPIKNLINLERLTLGDNKLV--SL 440

Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449
           A + N  NL SL+I    +++     I+DL++L  LN+++N N+TD  L +++ L  L  
Sbjct: 441 AGIENLVNLESLDINKNNVSNLA--SIRDLTNLKSLNINEN-NVTD--LSVVTNLKNLER 495

Query: 450 LNVSNSRITSAG 461
           ++++ + +TS G
Sbjct: 496 ISLNKNGVTSLG 507



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 151/355 (42%), Gaps = 80/355 (22%)

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG-IAYLKGLQKLTLLNLEGCPVTA 218
           LN+K  N     D+  L    NL+SL +S +++ D G ++ LK L++LTL   +   V A
Sbjct: 86  LNLKSKNI---KDISGLEFFENLQSLDLSNNEIKDLGSLSGLKYLKELTLYKNKITDVKA 142

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
                L  L +L  LNL   ++ +   E    +  L+ L+LG N +       LK L NL
Sbjct: 143 -----LDGLKNLEKLNLRDNKVKN--IEGLKGLEKLRELDLGKNSVFQPK--PLKDLKNL 193

Query: 279 ESLNLDSCGIGD----------EGLV----------NLTGLCNLKCLELSDTQVGSSGLR 318
             LNL+S GIG+          E L+           L  L N+  L L D  V   G  
Sbjct: 194 RILNLESNGIGNAEDLEELKQVEHLILSNNTVDDVEPLLTLTNVNKLYLDDNPVTHIG-- 251

Query: 319 HLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLN----LDARQITD----------- 362
            L  +TNL+ +N++   I D   L+K   L  LK  N    LD +++ D           
Sbjct: 252 KLKDMTNLKRLNINNDSIEDLAELKKFKNLQWLKFKNQEMVLDNKKLNDLLVDPNKEVKF 311

Query: 363 ----------------TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
                            G      L  +T LDL+   +T+   A + N  +LR L     
Sbjct: 312 ADKNLEFAIRDKIEKPKGAIKKADLQRVTQLDLWDKNVTN--LAGIENLIDLRVL----- 364

Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDK---TLELISGLTGLVSLNVSNSRIT 458
              +AG  +I +L  L  ++  +N  LT     +LE + GLT L +L ++ + ++
Sbjct: 365 ---NAGKNNISNLEPLKSMDNLENLYLTKTKVVSLEPLRGLTNLKALVINETNVS 416


>gi|406831323|ref|ZP_11090917.1| hypothetical protein SpalD1_06790 [Schlesneria paludicola DSM
           18645]
          Length = 539

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 159/346 (45%), Gaps = 19/346 (5%)

Query: 24  SLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNL 83
           +++A ++ A Q L    +   +   + + +    +++S+   G  + D  L      S L
Sbjct: 129 TMKAVKERAKQRLPKWIHEYFDSPKLRIFSDDDGNVVSLSDYGV-LNDKALAKFSVLSTL 187

Query: 84  QSLDFNFCIQISDGGLEHLRGLSNL----TSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
           + + F    Q +  GL HL  L+NL     S S +  N +    +++ + + +L +L+L 
Sbjct: 188 RGIQFEGAPQFTVEGLSHLSKLTNLERLSASFSSQSANELGDATLRSISEIESLRELNLS 247

Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS--------K 191
            C     GL +L+ L  L  L+I     +TD+ +  ++ L +LK L ++           
Sbjct: 248 ECGVTDEGLKSLEKLPNLTHLSIYQEGRLTDAALSTIAKLKHLKVLTLTTHVGTPLGRMH 307

Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
            ++S    L  L +L  L+L G  V+   L+       L  L +NR Q  DD  +  +K 
Sbjct: 308 FSESATNQLIALTELEHLDLSGHDVSTDLLN----FPRLKSLRINRNQFDDDLAKAIAKC 363

Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
             L  L++  +E+TD  L HL+ L +L  L++ +  I D  + +L    NL  + L   +
Sbjct: 364 RELTHLDVSCSEMTDTALEHLRPLPSLTQLHIRAEEISDNAIAHLKLFPNLASVTLHTAE 423

Query: 312 VGSSGLRHLSGLTNLESINLSFT--GISDGSLRKLAGLSSLKSLNL 355
           +    L +LS   +L  ++L++     S   L +LA L +L++L L
Sbjct: 424 LTDKSLEYLSQTASLTKLDLNWATNHFSRHGLEQLANLPNLETLEL 469



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 144/321 (44%), Gaps = 44/321 (13%)

Query: 192 VTDSGIAYLKGLQKLTLL------NLEGCP-VTAACLDSLSALGSLFYLNLNRC-----Q 239
           ++D G+   K L K ++L        EG P  T   L  LS L +L  L+ +       +
Sbjct: 167 LSDYGVLNDKALAKFSVLSTLRGIQFEGAPQFTVEGLSHLSKLTNLERLSASFSSQSANE 226

Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTG 298
           L D      S+I SL+ LNL    +TDE L  L+ L NL  L++   G + D  L  +  
Sbjct: 227 LGDATLRSISEIESLRELNLSECGVTDEGLKSLEKLPNLTHLSIYQEGRLTDAALSTIAK 286

Query: 299 LCNLKCLELSDTQVGSS-GLRHLS--------GLTNLESINLSFTGIS------------ 337
           L +LK L L+ T VG+  G  H S         LT LE ++LS   +S            
Sbjct: 287 LKHLKVLTLT-THVGTPLGRMHFSESATNQLIALTELEHLDLSGHDVSTDLLNFPRLKSL 345

Query: 338 --------DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
                   D   + +A    L  L++   ++TDT L  L  L  LT L +    I+D+  
Sbjct: 346 RINRNQFDDDLAKAIAKCRELTHLDVSCSEMTDTALEHLRPLPSLTQLHIRAEEISDNAI 405

Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN-LTDKTLELISGLTGLV 448
           A+L+ F NL S+ +    LTD  ++++   +SLT L+L+   N  +   LE ++ L  L 
Sbjct: 406 AHLKLFPNLASVTLHTAELTDKSLEYLSQTASLTKLDLNWATNHFSRHGLEQLANLPNLE 465

Query: 449 SLNVSNSRITSAGLRHLNHAR 469
           +L +        GL+ +  A+
Sbjct: 466 TLELRIIPFQGGGLKLIRDAK 486



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 120/264 (45%), Gaps = 16/264 (6%)

Query: 65  SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
           S +++ D+ L  + +  +L+ L+ + C  ++D GL+ L  L NLT LS  +   +T   +
Sbjct: 223 SANELGDATLRSISEIESLRELNLSEC-GVTDEGLKSLEKLPNLTHLSIYQEGRLTDAAL 281

Query: 125 KAFAGLINLVKLDLERCT-----RIH---GGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
              A L +L  L L         R+H        L  L +LE L++   +  TD     L
Sbjct: 282 STIAKLKHLKVLTLTTHVGTPLGRMHFSESATNQLIALTELEHLDLSGHDVSTD-----L 336

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
                LKSL+I+ ++  D     +   ++LT L++    +T   L+ L  L SL  L++ 
Sbjct: 337 LNFPRLKSLRINRNQFDDDLAKAIAKCRELTHLDVSCSEMTDTALEHLRPLPSLTQLHIR 396

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD--SCGIGDEGLV 294
             ++SD+         +L  + L   E+TD+ L +L    +L  L+L+  +      GL 
Sbjct: 397 AEEISDNAIAHLKLFPNLASVTLHTAELTDKSLEYLSQTASLTKLDLNWATNHFSRHGLE 456

Query: 295 NLTGLCNLKCLELSDTQVGSSGLR 318
            L  L NL+ LEL        GL+
Sbjct: 457 QLANLPNLETLELRIIPFQGGGLK 480


>gi|87309591|ref|ZP_01091725.1| probable G protein-coupled receptor [Blastopirellula marina DSM
           3645]
 gi|87287355|gb|EAQ79255.1| probable G protein-coupled receptor [Blastopirellula marina DSM
           3645]
          Length = 328

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 105/223 (47%), Gaps = 5/223 (2%)

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           +TD+    L  L +L+ L ++ S VTD  +  +  L +L  L LE   VT+A + +L++ 
Sbjct: 80  MTDNAASHLVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLYLERTAVTSAGVAALASC 139

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
             L  L L  C + DD  E   ++ +L +L+L    ITD  + HL+ L +L++L L    
Sbjct: 140 EKLEELMLTECAIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSLPHLKTLYLRDTA 199

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           +  EG   L    +L+ ++LSD  +  S +  L    NLE + L  T ++D  L +    
Sbjct: 200 VTGEGFAMLKSSTDLRLIDLSDNSINRSTIETLRSFPNLERLYLGRTSLTDELLPEFIDT 259

Query: 348 -----SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
                  L+ L +    ITD  L  L  L  L  L +   R T
Sbjct: 260 LIRFNPHLRGLAIMEVPITDNSLTPLKRLAELPDLAVVDFRET 302



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 105/239 (43%), Gaps = 12/239 (5%)

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
           G++  L  N  +++D+       + SL+ LNL  + +TD+ L  +  L  L SL L+   
Sbjct: 68  GAVVELRANSARMTDNAASHLVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLYLERTA 127

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           +   G+  L     L+ L L++  +    L  +  L  L  ++LS T I+D  +  L  L
Sbjct: 128 VTSAGVAALASCEKLEELMLTECAIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSL 187

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
             LK+L L    +T  G A L S T L  +DL    I  S    LR+F NL  L +    
Sbjct: 188 PHLKTLYLRDTAVTGEGFAMLKSSTDLRLIDLSDNSINRSTIETLRSFPNLERLYLGRTS 247

Query: 408 LTDAGVKHIKDLSSLTLLNLSQN--------CNLTDKTLELISGLTGLVSLNVSNSRIT 458
           LTD  +    D    TL+  + +          +TD +L  +  L  L  L V + R T
Sbjct: 248 LTDELLPEFID----TLIRFNPHLRGLAIMEVPITDNSLTPLKRLAELPDLAVVDFRET 302



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 98/199 (49%), Gaps = 2/199 (1%)

Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
           ++   G++  L      +TD    HL  L +L+ LNL+  G+ D+ L  +  L  L+ L 
Sbjct: 63  EYDDQGAVVELRANSARMTDNAASHLVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLY 122

Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
           L  T V S+G+  L+    LE + L+   I D +L  +  L +L  L+L    ITD G+ 
Sbjct: 123 LERTAVTSAGVAALASCEKLEELMLTECAIQDDALETIGQLPALTLLSLSETPITDAGMF 182

Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
            L SL  L  L L    +T  G A L++  +LR +++    +  + ++ ++   +L  L 
Sbjct: 183 HLQSLPHLKTLYLRDTAVTGEGFAMLKSSTDLRLIDLSDNSINRSTIETLRSFPNLERLY 242

Query: 427 LSQNCNLTDKTL-ELISGL 444
           L +  +LTD+ L E I  L
Sbjct: 243 LGR-TSLTDELLPEFIDTL 260



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 84/178 (47%)

Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
           L+ + +++TD+  ++L  LQ L  LNL    VT   L+ + AL  L  L L R  ++  G
Sbjct: 73  LRANSARMTDNAASHLVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLYLERTAVTSAG 132

Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
               +    L+ L L    I D+ L  +  L  L  L+L    I D G+ +L  L +LK 
Sbjct: 133 VAALASCEKLEELMLTECAIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSLPHLKT 192

Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
           L L DT V   G   L   T+L  I+LS   I+  ++  L    +L+ L L    +TD
Sbjct: 193 LYLRDTAVTGEGFAMLKSSTDLRLIDLSDNSINRSTIETLRSFPNLERLYLGRTSLTD 250



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 106/260 (40%), Gaps = 34/260 (13%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           +++D    HL  L +L  L+  ++  +T + ++    L  L  L LER      G+  L 
Sbjct: 79  RMTDNAASHLVMLQSLQRLNLNQSG-VTDKSLEIMGALPELRSLYLERTAVTSAGVAALA 137

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
              KLE L +  C  I D  ++ +  L  L  L +S + +TD+G+ +L+ L  L  L L 
Sbjct: 138 SCEKLEELMLTEC-AIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSLPHLKTLYLR 196

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
              VT                         +G         L++++L  N I    +  L
Sbjct: 197 DTAVTG------------------------EGFAMLKSSTDLRLIDLSDNSINRSTIETL 232

Query: 273 KGLTNLESLNLDSCGIGDEGLVNL--------TGLCNLKCLELSDTQVGSSGLRHLSGLT 324
           +   NLE L L    + DE L             L  L  +E+  T    + L+ L+ L 
Sbjct: 233 RSFPNLERLYLGRTSLTDELLPEFIDTLIRFNPHLRGLAIMEVPITDNSLTPLKRLAELP 292

Query: 325 NLESINLSFTGISDGSLRKL 344
           +L  ++   TG++ G+ ++L
Sbjct: 293 DLAVVDFRETGVTRGAFQEL 312



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 1/114 (0%)

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
           L  ++ ++TD   + L  L  L  L+L  + +TD     +     LRSL +    +T AG
Sbjct: 73  LRANSARMTDNAASHLVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLYLERTAVTSAG 132

Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
           V  +     L  L L++ C + D  LE I  L  L  L++S + IT AG+ HL 
Sbjct: 133 VAALASCEKLEELMLTE-CAIQDDALETIGQLPALTLLSLSETPITDAGMFHLQ 185


>gi|47219755|emb|CAG03382.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 388

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 158/327 (48%), Gaps = 46/327 (14%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-----GLINLVKLDLERCTRIHGGLVNLKGLMKL 157
           RG+  +  LS RR+ +   QGM         G  NL    L        G   ++ +  L
Sbjct: 71  RGIKKVQILSLRRSLSYVIQGMPHIESLNLCGCFNLTDNGL--------GHAFVQDIPSL 122

Query: 158 ESLNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
             LN+  C  ITDS +  ++  L NL+ L++  CS +T++G+  +  GL +L  LNL  C
Sbjct: 123 RVLNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLVAWGLHRLKSLNLRSC 182

Query: 215 -PVTAACLDSLSALG--------SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
             V+   +  LS +         SL  L L  CQ L+D   +  SK +  LKVLNL F  
Sbjct: 183 RHVSDVGIGHLSGMTRSAAEGCLSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCG 242

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
            I+D  ++HL  +T+L SLNL SC  I D G+++L  G   L  L++S   ++G   L H
Sbjct: 243 GISDGGMIHLSHMTHLCSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKIGDQSLAH 302

Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHL 377
           ++             G+ DG  R +  +  LK+LN+    +ITD GL  +   LT LT +
Sbjct: 303 IA------------QGLDDGINRMVRQMHELKTLNIGQCGRITDKGLELIADHLTQLTGI 350

Query: 378 DLFG-ARITDSGAAYLRNFKNLRSLEI 403
           DL+G  +IT  G   +     L+ L +
Sbjct: 351 DLYGCTKITKRGLERITQLPCLKVLNL 377



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 153/311 (49%), Gaps = 54/311 (17%)

Query: 176 LSGLTNLKSLQI-SCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           + G+ +++SL +  C  +TD+G+  A+++ +  L +LNL  C          S+LG +  
Sbjct: 89  IQGMPHIESLNLCGCFNLTDNGLGHAFVQDIPSLRVLNLSLCKQITD-----SSLGRIAQ 143

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDE 291
              N   L   GC   +  G L V                 GL  L+SLNL SC  + D 
Sbjct: 144 YLKNLEVLELGGCSNITNTGLLLVA---------------WGLHRLKSLNLRSCRHVSDV 188

Query: 292 GLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGS 340
           G+ +L+G+         +L+ L L D Q +    L+H+S GL  L+ +NLSF G ISDG 
Sbjct: 189 GIGHLSGMTRSAAEGCLSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCGGISDGG 248

Query: 341 LRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYLRNFK 396
           +  L+ ++ L SLNL +   I+DTG+   A+ SL  L+ LD+ F  +I D   A++    
Sbjct: 249 MIHLSHMTHLCSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKIGDQSLAHIAQ-- 305

Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN- 454
                     GL D   + ++ +  L  LN+ Q   +TDK LELI+  LT L  +++   
Sbjct: 306 ----------GLDDGINRMVRQMHELKTLNIGQCGRITDKGLELIADHLTQLTGIDLYGC 355

Query: 455 SRITSAGLRHL 465
           ++IT  GL  +
Sbjct: 356 TKITKRGLERI 366



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 152/310 (49%), Gaps = 69/310 (22%)

Query: 68  DVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
           ++TD+GL H  ++D  +L+ L+ + C QI+D  L  +                  AQ +K
Sbjct: 105 NLTDNGLGHAFVQDIPSLRVLNLSLCKQITDSSLGRI------------------AQYLK 146

Query: 126 AFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--- 180
                 NL  L+L  C+ I   G L+   GL +L+SLN++ C  ++D  +  LSG+T   
Sbjct: 147 ------NLEVLELGGCSNITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSA 200

Query: 181 -----NLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFY 232
                +L+ L +  C K+TD  + ++ KGL KL +LNL  C  ++   +  LS +  L  
Sbjct: 201 AEGCLSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCGGISDGGMIHLSHMTHLCS 260

Query: 233 LNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL------------KGLT 276
           LNL  C  +SD G    + +GSL++  L++ F ++I D+ L H+            + + 
Sbjct: 261 LNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKIGDQSLAHIAQGLDDGINRMVRQMH 319

Query: 277 NLESLNLDSCG-IGDEG-------LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
            L++LN+  CG I D+G       L  LTG+    C     T++   GL  ++ L  L+ 
Sbjct: 320 ELKTLNIGQCGRITDKGLELIADHLTQLTGIDLYGC-----TKITKRGLERITQLPCLKV 374

Query: 329 INLSFTGISD 338
           +NL    +++
Sbjct: 375 LNLGLWQMTE 384



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 130/252 (51%), Gaps = 29/252 (11%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
           + D  +  IA    +L  ++L G S++T++GL+ +      L+SL+   C  +SD G+ H
Sbjct: 133 ITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGH 192

Query: 102 LRGLS--------NLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNL 151
           L G++        +L  L+ +    +T   +K  + GL  L  L+L  C  I  GG+++L
Sbjct: 193 LSGMTRSAAEGCLSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCGGISDGGMIHL 252

Query: 152 KGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL--------- 200
             +  L SLN++ C+ I+D+ +  L+ G   L  L +S C K+ D  +A++         
Sbjct: 253 SHMTHLCSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKIGDQSLAHIAQGLDDGIN 312

Query: 201 ---KGLQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSL 254
              + + +L  LN+  C  +T   L+ ++  L  L  ++L  C +++  G E+ +++  L
Sbjct: 313 RMVRQMHELKTLNIGQCGRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCL 372

Query: 255 KVLNLGFNEITD 266
           KVLNLG  ++T+
Sbjct: 373 KVLNLGLWQMTE 384


>gi|72385469|ref|XP_846402.1| leucine-rich repeat protein (LRRP) [Trypanosoma brucei TREU927]
 gi|9366571|emb|CAB95333.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
            brucei strain 927/4 GUTat10.1]
          Length = 1448

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 129/487 (26%), Positives = 213/487 (43%), Gaps = 73/487 (14%)

Query: 32   ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
            AL +L L     +N  W  +   Q   L    LS + +TD  + H   C NL +LD +FC
Sbjct: 610  ALNELNLSNCIRINAGWEAIEKLQ--QLHVAILSNTHITDRDISHFSKCKNLVTLDLSFC 667

Query: 92   IQISD-------GGLEHL---------RGLSNLTSLSFRRNNAITAQGMKAFAGLI---- 131
             ++ D         LE L         +GLS L  L   R   +  +G++    +I    
Sbjct: 668  NKLLDVTTLSNITTLEELNLDSCSNIRKGLSVLGELP--RLCVLNIKGVQLEDSVIGSLG 725

Query: 132  ---NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
               + V+L LE C +  GG+  L  L+ LE LN+ +C+ +T S M  L  L  L+ L + 
Sbjct: 726  NGNSFVRLSLENC-KGFGGVTPLSNLVTLEELNLHYCDKVT-SGMGTLGRLLQLRVLDLG 783

Query: 189  CSKVTD------------------------SGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
             ++V D                        + I+ +  L  L  LN++ C    +  +  
Sbjct: 784  RTQVDDNSLENICTCSSPLVSLNLSHCKKITSISAIASLTALEELNIDNCCNVTSGWNVF 843

Query: 225  SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNL 283
              L  L    L+  +++D+  +  S+  SL  LNL F  +ITD  +  L  +T LE LNL
Sbjct: 844  GTLHQLRVATLSNTRINDENIQHVSECKSLNTLNLAFCKDITD--VTALSTITMLEELNL 901

Query: 284  DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES---INLSFTGISDGS 340
            D C    +G+  L  L  ++ L + +  +G S  +  S L N +S   +NL  + +   S
Sbjct: 902  DCCHNIRKGIETLGKLPKVRILSMKECYMGDSDAQQCSILGNSKSLVKLNLERS-MGFIS 960

Query: 341  LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
            ++ L+ +++L+ L LD+      G+  + S + L  L +   + TD      +N    +S
Sbjct: 961  VKALSNIATLEELVLDSV----CGIYDVLSFSCLPRLRVLNLKYTDINDDVTKNISESKS 1016

Query: 401  LEICGGGLTDAGVKHIKDLSSL----TLLNLSQN-CNLTDKTLELISGLTGLVSLNVSNS 455
            L+     L  +  K + D+S L    TL  L+ N CN   K  E +  L  L    +S++
Sbjct: 1017 LQ----SLNLSHCKWVTDISVLSSLSTLEELNVNFCNGIRKGWESLGKLPLLRVAILSDT 1072

Query: 456  RITSAGL 462
             IT+  +
Sbjct: 1073 NITAKDI 1079



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 120/430 (27%), Positives = 181/430 (42%), Gaps = 51/430 (11%)

Query: 64   LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD----------------------GGLEH 101
            LS + + D  + H+ +C +L +L+  FC  I+D                       G+E 
Sbjct: 854  LSNTRINDENIQHVSECKSLNTLNLAFCKDITDVTALSTITMLEELNLDCCHNIRKGIET 913

Query: 102  LRGLSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
            L  L  +  LS +        AQ         +LVKL+LER      G +++K L  + +
Sbjct: 914  LGKLPKVRILSMKECYMGDSDAQQCSILGNSKSLVKLNLERSM----GFISVKALSNIAT 969

Query: 160  LNIKWCNCITDS-----DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
            L       + DS     D+   S L  L+ L +  + + D     +   + L  LNL  C
Sbjct: 970  LE----ELVLDSVCGIYDVLSFSCLPRLRVLNLKYTDINDDVTKNISESKSLQSLNLSHC 1025

Query: 215  PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
                  +  LS+L +L  LN+N C     G E   K+  L+V  L    IT + +  L  
Sbjct: 1026 KWVTD-ISVLSSLSTLEELNVNFCNGIRKGWESLGKLPLLRVAILSDTNITAKDIACLSS 1084

Query: 275  LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE---LSDTQVGSSGLRHLSGLTNLESINL 331
               L  L    C    E L ++T +  ++ LE   +     G  GL  L  L+ L  ++L
Sbjct: 1085 CKKLVKLQFFRC----EKLSDVTVVYEIQSLEELIVRKYSDGLKGLNALGTLSRLRFLHL 1140

Query: 332  SFTGISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
                 SD S+  +    SL  LN++ R+ +TD     L+++T L  L L     T  GA 
Sbjct: 1141 RNARGSDISVESIGTSKSLVRLNIETREELTDA--TPLSNITSLEELSLRDCGDTLEGAW 1198

Query: 391  YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
             L     LRSL++    ++D  +  I     +T LNL  N  LTD  +  IS LT L  L
Sbjct: 1199 TLGKLPRLRSLDLGLSDISDNTLDEICLSRFITSLNLRYNFKLTD--ISSISNLTALEEL 1256

Query: 451  NVSN-SRITS 459
            N+S   RITS
Sbjct: 1257 NLSGCHRITS 1266



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 108/418 (25%), Positives = 183/418 (43%), Gaps = 38/418 (9%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+ ++L  ++L+ +++ DS +  +  C  L  L  + C  ++D     +  L+ L  L+ 
Sbjct: 276 SRLTNLKCLELNSTNIDDSCVEEISACVKLSKLSVSECNNVTDAT--PISQLAALEELNL 333

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
             +N    +G+     L+ L  LDL         L +L     LE LNI +C  I  +D+
Sbjct: 334 --SNCHITKGIGTLGMLLRLRILDLSGVPVEDNCLKDLCDCGSLERLNISYC--IQLTDI 389

Query: 174 KPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
            PLS  T ++ L ++ C ++T  GI  +  L +L +L+++   ++   LDS+   G L  
Sbjct: 390 NPLSNATAIEELNLNGCRRIT-RGIGVVWALPRLRILHMKDVHLSEPSLDSVGTGGLLVK 448

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           ++L+ C                     GF ++T      L  +  LE LN+  C     G
Sbjct: 449 VSLDNCA--------------------GFGDMT-----LLSSIVTLEELNIQKCADIISG 483

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLK 351
           +  L  L  L+ L + +  + S     +    +L  + L SFTG+S+  +  LA + +L+
Sbjct: 484 VGCLGTLPYLRVLNVKEVHISSLDFIGIGASKSLLQLTLESFTGLSN--VEALANILTLE 541

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
            L+L      D G+  L +L  L  LDL G    +     L   + + SL +        
Sbjct: 542 KLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNL-SHCWKMT 600

Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
            V HI  L +L  LNLS NC   +   E I  L  L    +SN+ IT   + H +  +
Sbjct: 601 NVSHISSLEALNELNLS-NCIRINAGWEAIEKLQQLHVAILSNTHITDRDISHFSKCK 657



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 131/551 (23%), Positives = 209/551 (37%), Gaps = 163/551 (29%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGL 105
           +DLSG  V D+ L  L DC +L+ L+ ++CIQ++D         +E L         RG+
Sbjct: 354 LDLSGVPVEDNCLKDLCDCGSLERLNISYCIQLTDINPLSNATAIEELNLNGCRRITRGI 413

Query: 106 SNLTSLSFRR----------------------------NNAITAQGMKAFAGLINLVKLD 137
             + +L   R                            +N      M   + ++ L +L+
Sbjct: 414 GVVWALPRLRILHMKDVHLSEPSLDSVGTGGLLVKVSLDNCAGFGDMTLLSSIVTLEELN 473

Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD--------------MKPLSGLTNLK 183
           +++C  I  G+  L  L  L  LN+K  + I+  D              ++  +GL+N++
Sbjct: 474 IQKCADIISGVGCLGTLPYLRVLNVKEVH-ISSLDFIGIGASKSLLQLTLESFTGLSNVE 532

Query: 184 SLQ--ISCSKVT-------DSGIAYLKGLQKLTLLNLEGCPVTAACLDSL---------- 224
           +L   ++  K++       D+GI  L  L +L +L+L G       L SL          
Sbjct: 533 ALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLN 592

Query: 225 -------------SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
                        S+L +L  LNL+ C   + G E   K+  L V  L    ITD  + H
Sbjct: 593 LSHCWKMTNVSHISSLEALNELNLSNCIRINAGWEAIEKLQQLHVAILSNTHITDRDISH 652

Query: 272 LKGLTNLESL-----------------------NLDSCGIGDEGLV---NLTGLC--NLK 303
                NL +L                       NLDSC    +GL     L  LC  N+K
Sbjct: 653 FSKCKNLVTLDLSFCNKLLDVTTLSNITTLEELNLDSCSNIRKGLSVLGELPRLCVLNIK 712

Query: 304 CLELSDTQVGS------------------SGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
            ++L D+ +GS                   G+  LS L  LE +NL +       +  L 
Sbjct: 713 GVQLEDSVIGSLGNGNSFVRLSLENCKGFGGVTPLSNLVTLEELNLHYCDKVTSGMGTLG 772

Query: 346 GLSSLKSLNLDARQITD------------------------TGLAALTSLTGLTHLDLFG 381
            L  L+ L+L   Q+ D                        T ++A+ SLT L  L++  
Sbjct: 773 RLLQLRVLDLGRTQVDDNSLENICTCSSPLVSLNLSHCKKITSISAIASLTALEELNIDN 832

Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
                SG         LR   +    + D  ++H+ +  SL  LNL+   ++TD T   +
Sbjct: 833 CCNVTSGWNVFGTLHQLRVATLSNTRINDENIQHVSECKSLNTLNLAFCKDITDVT--AL 890

Query: 442 SGLTGLVSLNV 452
           S +T L  LN+
Sbjct: 891 STITMLEELNL 901



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 116/409 (28%), Positives = 187/409 (45%), Gaps = 31/409 (7%)

Query: 40   QYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGG 98
            +Y  +ND     I S+  SL S++LS    VTD  +  L   S L+ L+ NFC  I  G 
Sbjct: 999  KYTDINDDVTKNI-SESKSLQSLNLSHCKWVTDISV--LSSLSTLEELNVNFCNGIRKGW 1055

Query: 99   LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
             E L  L  L  ++   +  ITA+ +   +    LVKL   RC ++    V +  +  LE
Sbjct: 1056 -ESLGKLP-LLRVAILSDTNITAKDIACLSSCKKLVKLQFFRCEKLSDVTV-VYEIQSLE 1112

Query: 159  SLNIKWCNCITDSD----MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
             L ++       SD    +  L  L+ L+ L +  ++ +D  +  +   + L  LN+E  
Sbjct: 1113 ELIVR-----KYSDGLKGLNALGTLSRLRFLHLRNARGSDISVESIGTSKSLVRLNIETR 1167

Query: 215  P-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
              +T A    LS + SL  L+L  C  + +G     K+  L+ L+LG ++I+D  L  + 
Sbjct: 1168 EELTDA--TPLSNITSLEELSLRDCGDTLEGAWTLGKLPRLRSLDLGLSDISDNTLDEIC 1225

Query: 274  GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE---LSDTQVGSSGLRHLSGLTNLESIN 330
                + SLNL      +  L +++ + NL  LE   LS     +SG   LS L  L  +N
Sbjct: 1226 LSRFITSLNLRY----NFKLTDISSISNLTALEELNLSGCHRITSGWEALSELPRLRVLN 1281

Query: 331  LSFTGIS--DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
            L  T ++  DG    ++   SL +LNL++  +TD   + L ++  L  L +        G
Sbjct: 1282 LESTSVTTRDGGYY-ISRCKSLVTLNLESCDMTDA--SCLANIKTLEELHIGECDELTQG 1338

Query: 389  AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
             + L     LR L +    +TD  ++ I+   ++  LNLS   NL D T
Sbjct: 1339 FSALFTLPRLRILNLMDSLITDEDLREIQPPHTIEELNLSYCKNLNDIT 1387



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 179/420 (42%), Gaps = 64/420 (15%)

Query: 62   VDLSGSDVTDSGLIHLKDCSN-LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
            +DL  + V D+ L ++  CS+ L SL+ + C +I+   +  +  L+ L  L+      +T
Sbjct: 780  LDLGRTQVDDNSLENICTCSSPLVSLNLSHCKKIT--SISAIASLTALEELNIDNCCNVT 837

Query: 121  AQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
            + G   F  L  L    L   TRI+   + ++     L +LN+ +C  ITD  +  LS +
Sbjct: 838  S-GWNVFGTLHQLRVATLSN-TRINDENIQHVSECKSLNTLNLAFCKDITD--VTALSTI 893

Query: 180  TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLN 236
            T L+ L + C      GI  L  L K+ +L+++ C +  +     S LG   SL  LNL 
Sbjct: 894  TMLEELNLDCCHNIRKGIETLGKLPKVRILSMKECYMGDSDAQQCSILGNSKSLVKLNLE 953

Query: 237  RCQ-----------------LSDDGCE-----KFSKIGSLKVLNLGFNEITDECLVHLKG 274
            R                   + D  C       FS +  L+VLNL + +I D+   ++  
Sbjct: 954  RSMGFISVKALSNIATLEELVLDSVCGIYDVLSFSCLPRLRVLNLKYTDINDDVTKNISE 1013

Query: 275  LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF- 333
              +L+SLNL  C                    ++D  V       LS L+ LE +N++F 
Sbjct: 1014 SKSLQSLNLSHCKW------------------VTDISV-------LSSLSTLEELNVNFC 1048

Query: 334  TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 392
             GI  G    L  L  L+   L    IT   +A L+S   L  L  F   +++D    Y 
Sbjct: 1049 NGIRKG-WESLGKLPLLRVAILSDTNITAKDIACLSSCKKLVKLQFFRCEKLSDVTVVY- 1106

Query: 393  RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
               ++L  L +        G+  +  LS L  L+L +N   +D ++E I     LV LN+
Sbjct: 1107 -EIQSLEELIVRKYSDGLKGLNALGTLSRLRFLHL-RNARGSDISVESIGTSKSLVRLNI 1164



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 157/365 (43%), Gaps = 55/365 (15%)

Query: 64   LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------------------GGLEHLRG 104
            LS +++T   +  L  C  L  L F  C ++SD                    GL+ L  
Sbjct: 1069 LSDTNITAKDIACLSSCKKLVKLQFFRCEKLSDVTVVYEIQSLEELIVRKYSDGLKGLNA 1128

Query: 105  LSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
            L  L+ L F   RN   +   +++     +LV+L++E    +      L  +  LE L++
Sbjct: 1129 LGTLSRLRFLHLRNARGSDISVESIGTSKSLVRLNIETREELTDA-TPLSNITSLEELSL 1187

Query: 163  KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
            + C   T      L  L  L+SL +  S ++D+ +  +   + +T LNL         + 
Sbjct: 1188 RDCG-DTLEGAWTLGKLPRLRSLDLGLSDISDNTLDEICLSRFITSLNLRY-NFKLTDIS 1245

Query: 223  SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESL 281
            S+S L +L  LNL+ C     G E  S++  L+VLNL    +T  +   ++    +L +L
Sbjct: 1246 SISNLTALEELNLSGCHRITSGWEALSELPRLRVLNLESTSVTTRDGGYYISRCKSLVTL 1305

Query: 282  NLDSCGIGD----------------------EGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
            NL+SC + D                      +G   L  L  L+ L L D+ +    LR 
Sbjct: 1306 NLESCDMTDASCLANIKTLEELHIGECDELTQGFSALFTLPRLRILNLMDSLITDEDLRE 1365

Query: 320  LSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL----DARQITDTGLAALTSLTGL 374
            +     +E +NLS+   ++D  +  L  + S+K L+L    D R++ + G  +L  L  L
Sbjct: 1366 IQPPHTIEELNLSYCKNLND--ITPLGRIKSIKKLHLSQSHDVRRLRE-GFRSLLELPCL 1422

Query: 375  THLDL 379
            + +DL
Sbjct: 1423 SWVDL 1427



 Score = 41.6 bits (96), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 95/211 (45%), Gaps = 33/211 (15%)

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
           LK L L  N I +    HL  +  LE L + D+  + +  +  ++ L NLKCLEL+ T +
Sbjct: 234 LKRLRLRSNNIDNNDARHLFSVGTLEELAITDTMQLTN--IREISRLTNLKCLELNSTNI 291

Query: 313 GSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
             S +  +S    L  +++S    ++D +   ++ L++L+ LNL    IT  G+  L  L
Sbjct: 292 DDSCVEEISACVKLSKLSVSECNNVTDAT--PISQLAALEELNLSNCHITK-GIGTLGML 348

Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
             L  LDL G  + D+                C   L D G        SL  LN+S   
Sbjct: 349 LRLRILDLSGVPVEDN----------------CLKDLCDCG--------SLERLNISYCI 384

Query: 432 NLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
            LTD  +  +S  T +  LN++  R  + G+
Sbjct: 385 QLTD--INPLSNATAIEELNLNGCRRITRGI 413


>gi|290987030|ref|XP_002676226.1| predicted protein [Naegleria gruberi]
 gi|284089827|gb|EFC43482.1| predicted protein [Naegleria gruberi]
          Length = 298

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 153/330 (46%), Gaps = 39/330 (11%)

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL-ERC-TRIHGGLVNLKGLMKLESLNI 162
           L NLT L   R   I   G+K  + L NL  L++ + C T    GL ++  + KL  L +
Sbjct: 1   LENLTFLEISR---IGDMGLKYISELKNLRILNIHDPCFTFTRYGLESISEMPKLTCLKV 57

Query: 163 ---KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
              K CN      +  +S  T L  L  +   + D G+  L  +++LT L L  CP  A 
Sbjct: 58  RDLKICN----EGVNWISQSTQLTDLDFTTCTL-DQGLESLCEMKRLTSLWLPSCPKYAN 112

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            ++ +  L  L  LN+    ++D       ++  L  L++  N+I  E +  +  LTNL 
Sbjct: 113 KVELIGQLTQLTSLNICARGINDQDGVHIKELTQLTELDISLNQIVFETIESISQLTNLI 172

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISD 338
            LN+  C IGD+G           CL      +G  S LR L  L NL         I+D
Sbjct: 173 ILNMSYCNIGDDG----------ACL------IGELSQLRELKVLKNL---------ITD 207

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             +  ++ L  L  L++   +I+ TG  +++ L  LT+L++    I D G  ++ +   L
Sbjct: 208 AGVISISQLKHLIKLDISNNEISKTGAESISGLRNLTYLNIGYNLIGDEGCDFICDLSLL 267

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
           RSL     G++  G+K I++L  LT L+LS
Sbjct: 268 RSLHADKTGISSEGIKSIRNLRKLTSLSLS 297



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 131/285 (45%), Gaps = 30/285 (10%)

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-EGC-PVTAACLDSLSALGSLFYLNLN 236
           L NL  L+IS  ++ D G+ Y+  L+ L +LN+ + C   T   L+S+S +  L  L   
Sbjct: 1   LENLTFLEIS--RIGDMGLKYISELKNLRILNIHDPCFTFTRYGLESISEMPKLTCL--- 55

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
                        K+  LK+ N G N I+          T L  L+  +C + D+GL +L
Sbjct: 56  -------------KVRDLKICNEGVNWISQS--------TQLTDLDFTTCTL-DQGLESL 93

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
             +  L  L L      ++ +  +  LT L S+N+   GI+D     +  L+ L  L++ 
Sbjct: 94  CEMKRLTSLWLPSCPKYANKVELIGQLTQLTSLNICARGINDQDGVHIKELTQLTELDIS 153

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
             QI    + +++ LT L  L++    I D GA  +     LR L++    +TDAGV  I
Sbjct: 154 LNQIVFETIESISQLTNLIILNMSYCNIGDDGACLIGELSQLRELKVLKNLITDAGVISI 213

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
             L  L  L++S N  ++    E ISGL  L  LN+  + I   G
Sbjct: 214 SQLKHLIKLDISNN-EISKTGAESISGLRNLTYLNIGYNLIGDEG 257



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 119/246 (48%), Gaps = 14/246 (5%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           + + G+  +   + L  LDF  C    D GLE L  +  LTSL +  +    A  ++   
Sbjct: 62  ICNEGVNWISQSTQLTDLDFTTCTL--DQGLESLCEMKRLTSL-WLPSCPKYANKVELIG 118

Query: 129 GLINLVKLDLERCTRIHGGL-----VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
            L  L  L++  C R   G+     V++K L +L  L+I   N I    ++ +S LTNL 
Sbjct: 119 QLTQLTSLNI--CAR---GINDQDGVHIKELTQLTELDISL-NQIVFETIESISQLTNLI 172

Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
            L +S   + D G   +  L +L  L +    +T A + S+S L  L  L+++  ++S  
Sbjct: 173 ILNMSYCNIGDDGACLIGELSQLRELKVLKNLITDAGVISISQLKHLIKLDISNNEISKT 232

Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
           G E  S + +L  LN+G+N I DE    +  L+ L SL+ D  GI  EG+ ++  L  L 
Sbjct: 233 GAESISGLRNLTYLNIGYNLIGDEGCDFICDLSLLRSLHADKTGISSEGIKSIRNLRKLT 292

Query: 304 CLELSD 309
            L LS+
Sbjct: 293 SLSLSN 298


>gi|290972751|ref|XP_002669114.1| predicted protein [Naegleria gruberi]
 gi|284082657|gb|EFC36370.1| predicted protein [Naegleria gruberi]
          Length = 259

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 110/216 (50%), Gaps = 1/216 (0%)

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
           +  L + +N I  E  +H+  +  L +L++ +  + +EG   ++ L  LKCL++    +G
Sbjct: 34  ITTLTINYNSIGVEGAMHISKMEQLTNLDICNSVLYEEGAKYISQLEQLKCLDIGSNSIG 93

Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
            +G +++SG+  L  +++    I +   + ++ +  L  L +    I   G   ++ L  
Sbjct: 94  KNGAKYISGMKQLTRLDIFNNTICEEGAKSISEMKQLTHLKITFNDIGTEGAKYISQLRK 153

Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
           LTHLD+    I   G+ Y+     L  L I    + + GVKHI +++ LT L++  N  +
Sbjct: 154 LTHLDISSNDIGAKGSKYISEMNQLTILNIYNNDIGNEGVKHISEMNQLTRLDIGDN-EI 212

Query: 434 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           + + ++ ISG+  L +L++S + I   G + L+  +
Sbjct: 213 SAEGVKYISGMKQLTNLDISWNNIGDEGAQFLSQMK 248



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 132/252 (52%), Gaps = 15/252 (5%)

Query: 105 LSNLTSLSFRRNNAITAQGMKAF-AGLINLVKLDLERCTRIHGGLVNLKGLM---KLESL 160
           L N+T+L F+R        + AF   L+NL+K  +   T I+   + ++G M   K+E L
Sbjct: 8   LQNVTNLLFKRE-------IGAFDYKLLNLMK-GITTLT-INYNSIGVEGAMHISKMEQL 58

Query: 161 -NIKWCNCI-TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
            N+  CN +  +   K +S L  LK L I  + +  +G  Y+ G+++LT L++    +  
Sbjct: 59  TNLDICNSVLYEEGAKYISQLEQLKCLDIGSNSIGKNGAKYISGMKQLTRLDIFNNTICE 118

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
               S+S +  L +L +    +  +G +  S++  L  L++  N+I  +   ++  +  L
Sbjct: 119 EGAKSISEMKQLTHLKITFNDIGTEGAKYISQLRKLTHLDISSNDIGAKGSKYISEMNQL 178

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
             LN+ +  IG+EG+ +++ +  L  L++ D ++ + G++++SG+  L ++++S+  I D
Sbjct: 179 TILNIYNNDIGNEGVKHISEMNQLTRLDIGDNEISAEGVKYISGMKQLTNLDISWNNIGD 238

Query: 339 GSLRKLAGLSSL 350
              + L+ +  L
Sbjct: 239 EGAQFLSQMKQL 250



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 108/194 (55%), Gaps = 4/194 (2%)

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
           +KG+T L ++N +S G+  EG ++++ +  L  L++ ++ +   G +++S L  L+ +++
Sbjct: 31  MKGITTL-TINYNSIGV--EGAMHISKMEQLTNLDICNSVLYEEGAKYISQLEQLKCLDI 87

Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
               I     + ++G+  L  L++    I + G  +++ +  LTHL +    I   GA Y
Sbjct: 88  GSNSIGKNGAKYISGMKQLTRLDIFNNTICEEGAKSISEMKQLTHLKITFNDIGTEGAKY 147

Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
           +   + L  L+I    +   G K+I +++ LT+LN+  N ++ ++ ++ IS +  L  L+
Sbjct: 148 ISQLRKLTHLDISSNDIGAKGSKYISEMNQLTILNIYNN-DIGNEGVKHISEMNQLTRLD 206

Query: 452 VSNSRITSAGLRHL 465
           + ++ I++ G++++
Sbjct: 207 IGDNEISAEGVKYI 220



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 110/228 (48%), Gaps = 3/228 (1%)

Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
           +KG+  LT+ N     V  A    +S +  L  L++    L ++G +  S++  LK L++
Sbjct: 31  MKGITTLTI-NYNSIGVEGAM--HISKMEQLTNLDICNSVLYEEGAKYISQLEQLKCLDI 87

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
           G N I      ++ G+  L  L++ +  I +EG  +++ +  L  L+++   +G+ G ++
Sbjct: 88  GSNSIGKNGAKYISGMKQLTRLDIFNNTICEEGAKSISEMKQLTHLKITFNDIGTEGAKY 147

Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
           +S L  L  +++S   I     + ++ ++ L  LN+    I + G+  ++ +  LT LD+
Sbjct: 148 ISQLRKLTHLDISSNDIGAKGSKYISEMNQLTILNIYNNDIGNEGVKHISEMNQLTRLDI 207

Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
               I+  G  Y+   K L +L+I    + D G + +  +  L  L  
Sbjct: 208 GDNEISAEGVKYISGMKQLTNLDISWNNIGDEGAQFLSQMKQLIYLEF 255



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 104/210 (49%), Gaps = 2/210 (0%)

Query: 98  GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
           G  H+  +  LT+L    N+ +  +G K  + L  L  LD+   +    G   + G+ +L
Sbjct: 48  GAMHISKMEQLTNLDIC-NSVLYEEGAKYISQLEQLKCLDIGSNSIGKNGAKYISGMKQL 106

Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
             L+I + N I +   K +S +  L  L+I+ + +   G  Y+  L+KLT L++    + 
Sbjct: 107 TRLDI-FNNTICEEGAKSISEMKQLTHLKITFNDIGTEGAKYISQLRKLTHLDISSNDIG 165

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
           A     +S +  L  LN+    + ++G +  S++  L  L++G NEI+ E + ++ G+  
Sbjct: 166 AKGSKYISEMNQLTILNIYNNDIGNEGVKHISEMNQLTRLDIGDNEISAEGVKYISGMKQ 225

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
           L +L++    IGDEG   L+ +  L  LE 
Sbjct: 226 LTNLDISWNNIGDEGAQFLSQMKQLIYLEF 255



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 111/233 (47%)

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
           D K L+ +  + +L I+ + +   G  ++  +++LT L++    +       +S L  L 
Sbjct: 24  DYKLLNLMKGITTLTINYNSIGVEGAMHISKMEQLTNLDICNSVLYEEGAKYISQLEQLK 83

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
            L++    +  +G +  S +  L  L++  N I +E    +  +  L  L +    IG E
Sbjct: 84  CLDIGSNSIGKNGAKYISGMKQLTRLDIFNNTICEEGAKSISEMKQLTHLKITFNDIGTE 143

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
           G   ++ L  L  L++S   +G+ G +++S +  L  +N+    I +  ++ ++ ++ L 
Sbjct: 144 GAKYISQLRKLTHLDISSNDIGAKGSKYISEMNQLTILNIYNNDIGNEGVKHISEMNQLT 203

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
            L++   +I+  G+  ++ +  LT+LD+    I D GA +L   K L  LE  
Sbjct: 204 RLDIGDNEISAEGVKYISGMKQLTNLDISWNNIGDEGAQFLSQMKQLIYLEFI 256



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 1/112 (0%)

Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
           R+I       L  + G+T L +    I   GA ++   + L +L+IC   L + G K+I 
Sbjct: 18  REIGAFDYKLLNLMKGITTLTINYNSIGVEGAMHISKMEQLTNLDICNSVLYEEGAKYIS 77

Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
            L  L  L++  N  +     + ISG+  L  L++ N+ I   G + ++  +
Sbjct: 78  QLEQLKCLDIGSNS-IGKNGAKYISGMKQLTRLDIFNNTICEEGAKSISEMK 128


>gi|167861908|gb|ACA05653.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 125/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QITD  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQITD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|149173875|ref|ZP_01852504.1| hypothetical protein PM8797T_05540 [Planctomyces maris DSM 8797]
 gi|148847405|gb|EDL61739.1| hypothetical protein PM8797T_05540 [Planctomyces maris DSM 8797]
          Length = 525

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 101/387 (26%), Positives = 162/387 (41%), Gaps = 44/387 (11%)

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
           + G+  TD GL ++     L+ LD +   Q++D G+ HL  L  L  L        T   
Sbjct: 104 IKGNHFTDDGLRYVGQLKKLRYLDLSVNYQLTDAGMRHLESLKQLEHLDLSGCRRFTDAS 163

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK-----WCN------------ 166
            K+ A L +L  L L + +     L  L  L +L+ L +K     W N            
Sbjct: 164 GKSLAQLTSLRTLKLRQTSLTPDVLTALSQLPELKHLAVKYSKGMWLNENTIVPLEKMPL 223

Query: 167 ------CITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNL---EGCPV 216
                  I D ++  ++ + +LKSL     + + D  ++YL  ++++  LN+    G   
Sbjct: 224 EELEGMLIKDENLPLIAQMKSLKSLPFEQDRSIKDDQLSYLTHIRQIKKLNIVLTRGTSD 283

Query: 217 TAACLDSLSALGSLFYLNL---NRCQ---LSDDGCEKFSKIGSLKVLNLGF-NEITDECL 269
           T+  +  L AL  L  L++   N  +   L   G    +KI +LK L +G  N    E +
Sbjct: 284 TSQLI-QLQALPELETLSISLGNSTEGDPLDRSGLLALAKIPALKELGIGLVNVPILEAI 342

Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
            H   +  L +LN+D+       L  L  +  LK L +    V       L  + +LE I
Sbjct: 343 SHCTQVQKL-NLNVDTSQFQPTDLAYLKEMSRLKDLTVQIALVSDDLWATLGQVKSLEEI 401

Query: 330 NLSF--------TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
           + ++           S  SL++L  L  LK L+L+   +TD GL  L     L  L L  
Sbjct: 402 SFNWGWPPQKEPPPFSMTSLKQLQNLPRLKGLDLNGFPVTDEGLGYLGQCRTLERLGLNN 461

Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGL 408
           A IT++G   LR+   L+ L   G  +
Sbjct: 462 APITNAGLLQLRHLSQLKKLSFYGSKI 488



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 173/407 (42%), Gaps = 71/407 (17%)

Query: 92  IQISDGGLEHLRGLSNLTSLSFR-----RNNAITAQGMKAFAGLINLVKLDLERCTRI-H 145
           + ++D  L  L+ L  + +L+ R     + N  T  G++    L  L  LDL    ++  
Sbjct: 77  LPLADDDLTVLKELPEVQTLTLRGVHTIKGNHFTDDGLRYVGQLKKLRYLDLSVNYQLTD 136

Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS---------- 195
            G+ +L+ L +LE L++  C   TD+  K L+ LT+L++L++  + +T            
Sbjct: 137 AGMRHLESLKQLEHLDLSGCRRFTDASGKSLAQLTSLRTLKLRQTSLTPDVLTALSQLPE 196

Query: 196 ----GIAYLKG----------LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-L 240
                + Y KG          L+K+ L  LEG  +    L  ++ + SL  L   + + +
Sbjct: 197 LKHLAVKYSKGMWLNENTIVPLEKMPLEELEGMLIKDENLPLIAQMKSLKSLPFEQDRSI 256

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDEC--LVHLKGLTNLE--SLNLDSCGIGDE----G 292
            DD     + I  +K LN+     T +   L+ L+ L  LE  S++L +   GD     G
Sbjct: 257 KDDQLSYLTHIRQIKKLNIVLTRGTSDTSQLIQLQALPELETLSISLGNSTEGDPLDRSG 316

Query: 293 LVNLT----------GLCNLKCLE--------------LSDTQVGSSGLRHLSGLTNLES 328
           L+ L           GL N+  LE              +  +Q   + L +L  ++ L+ 
Sbjct: 317 LLALAKIPALKELGIGLVNVPILEAISHCTQVQKLNLNVDTSQFQPTDLAYLKEMSRLKD 376

Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNL--------DARQITDTGLAALTSLTGLTHLDLF 380
           + +    +SD     L  + SL+ ++         +    + T L  L +L  L  LDL 
Sbjct: 377 LTVQIALVSDDLWATLGQVKSLEEISFNWGWPPQKEPPPFSMTSLKQLQNLPRLKGLDLN 436

Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
           G  +TD G  YL   + L  L +    +T+AG+  ++ LS L  L+ 
Sbjct: 437 GFPVTDEGLGYLGQCRTLERLGLNNAPITNAGLLQLRHLSQLKKLSF 483



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 107/269 (39%), Gaps = 45/269 (16%)

Query: 94  ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD--LERCTRIHGGLVNL 151
           I D  L  +  + +L SL F ++ +I    +     +  + KL+  L R T     L+ L
Sbjct: 231 IKDENLPLIAQMKSLKSLPFEQDRSIKDDQLSYLTHIRQIKKLNIVLTRGTSDTSQLIQL 290

Query: 152 KGLMKLESLNIKWCNCITDSDMKPLS------------------GLTNLKSLQ------- 186
           + L +LE+L+I   N  T+ D  PL                   GL N+  L+       
Sbjct: 291 QALPELETLSISLGNS-TEGD--PLDRSGLLALAKIPALKELGIGLVNVPILEAISHCTQ 347

Query: 187 -------ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
                  +  S+   + +AYLK + +L  L ++   V+     +L  + SL  ++ N   
Sbjct: 348 VQKLNLNVDTSQFQPTDLAYLKEMSRLKDLTVQIALVSDDLWATLGQVKSLEEISFNWGW 407

Query: 240 LSDDGCEKFS--------KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
                   FS         +  LK L+L    +TDE L +L     LE L L++  I + 
Sbjct: 408 PPQKEPPPFSMTSLKQLQNLPRLKGLDLNGFPVTDEGLGYLGQCRTLERLGLNNAPITNA 467

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
           GL+ L  L  LK L    +++       L
Sbjct: 468 GLLQLRHLSQLKKLSFYGSKIDREPAEEL 496



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 7/107 (6%)

Query: 360 ITDTGLAALTSLTGLTHLDLFGAR------ITDSGAAYLRNFKNLRSLEI-CGGGLTDAG 412
           + D  L  L  L  +  L L G         TD G  Y+   K LR L++     LTDAG
Sbjct: 79  LADDDLTVLKELPEVQTLTLRGVHTIKGNHFTDDGLRYVGQLKKLRYLDLSVNYQLTDAG 138

Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
           ++H++ L  L  L+LS     TD + + ++ LT L +L +  + +T 
Sbjct: 139 MRHLESLKQLEHLDLSGCRRFTDASGKSLAQLTSLRTLKLRQTSLTP 185



 Score = 39.7 bits (91), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           +DL+G  VTD GL +L  C  L+ L  N    I++ GL  LR LS L  LSF
Sbjct: 433 LDLNGFPVTDEGLGYLGQCRTLERLGLNNA-PITNAGLLQLRHLSQLKKLSF 483


>gi|355785801|gb|EHH65984.1| F-box and leucine-rich repeat protein 14 [Macaca fascicularis]
          Length = 330

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 104/314 (33%), Positives = 167/314 (53%), Gaps = 48/314 (15%)

Query: 179 LTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
           + N++SL +S C  +TD+G+ +                        +  +GSL  LNL+ 
Sbjct: 1   MANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALNLSL 38

Query: 238 C-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEG 292
           C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + D G
Sbjct: 39  CKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVG 98

Query: 293 LVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSL 341
           + +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD  L
Sbjct: 99  IGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGL 158

Query: 342 RKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFK 396
             L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +   
Sbjct: 159 LHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLD 217

Query: 397 NLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN 454
            L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  +++  
Sbjct: 218 GLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYG 277

Query: 455 -SRITSAGLRHLNH 467
            +RIT  GL  +  
Sbjct: 278 CTRITKRGLERITQ 291



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 99/311 (31%), Positives = 167/311 (53%), Gaps = 32/311 (10%)

Query: 81  SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLD 137
           +N++SL+ + C  ++D GL H  ++ + +L +L+      IT   +   A  +  L  L+
Sbjct: 2   ANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLE 61

Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQI 187
           L  C+ I   G L+   GL +L+SLN++ C  ++D  +  L+G+T         L+ L +
Sbjct: 62  LGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTL 121

Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
             C K+TD  + ++ +GL  L LLNL  C  ++ A L  LS +GSL  LNL  C  +SD 
Sbjct: 122 QDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDT 181

Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-- 297
           G    + +GSL++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+G+  +   
Sbjct: 182 GIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQ 240

Query: 298 --GLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
             GL  L   +C+ ++D  +      HLS LT ++      T I+   L ++  L  LK 
Sbjct: 241 MHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG--CTRITKRGLERITQLPCLKV 297

Query: 353 LNLDARQITDT 363
           LNL   Q+TD+
Sbjct: 298 LNLGLWQMTDS 308



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 155/303 (51%), Gaps = 32/303 (10%)

Query: 154 LMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGLQKL 206
           +  +ESLN+  C  +TD+ +    +  + +L++L +S C ++TDS +     YLKGL+  
Sbjct: 1   MANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLE-- 58

Query: 207 TLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI------GSLKVL 257
            +L L GC        L     L  L  LNL  C+ LSD G    + +      G L + 
Sbjct: 59  -VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 117

Query: 258 NLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-SDTQ 311
            L   +   +TD  L H+ +GLT L  LNL  C GI D GL++L+ + +L+ L L S   
Sbjct: 118 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 177

Query: 312 VGSSGLRHLS-GLTNLESINLSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAAL 368
           +  +G+ HL+ G   L  +++SF   + D SL  +A GL  LKSL+L +  I+D G+  +
Sbjct: 178 ISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRM 237

Query: 369 T-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTL 424
              + GL  L++    RITD G   +  +   L  +++ G   +T  G++ I  L  L +
Sbjct: 238 VRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKV 297

Query: 425 LNL 427
           LNL
Sbjct: 298 LNL 300



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           +TD  L H+ +  + L+ L+ +FC  ISD GL HL  + +L SL+ R  + I+  G+   
Sbjct: 127 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 186

Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           A G + L  LD+  C ++    +    +GL  L+SL++  C+   D   + +  +  L++
Sbjct: 187 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 246

Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           L I  C ++TD G+  + + L +LT ++L GC                        +++ 
Sbjct: 247 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 283

Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
            G E+ +++  LKVLNLG  ++TD
Sbjct: 284 RGLERITQLPCLKVLNLGLWQMTD 307


>gi|290997880|ref|XP_002681509.1| predicted protein [Naegleria gruberi]
 gi|284095133|gb|EFC48765.1| predicted protein [Naegleria gruberi]
          Length = 226

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 106/215 (49%), Gaps = 5/215 (2%)

Query: 216 VTAACLDS-----LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
           V+   LDS     +S +  L  L +   ++ D+G +  S++  L  L +  N+I  + + 
Sbjct: 9   VSENLLDSDNVKFISEMKQLVALFVPTNRIGDEGTKLISEMKQLISLGISKNQIGAKGVK 68

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
           +L  L  L +L+++   IGDEG   ++ +  L  L + D Q+G  G++++S +  L  + 
Sbjct: 69  YLCKLKQLIALDINRNRIGDEGAKLISKMKQLTLLHVGDNQIGVKGVKYISEMKQLTCLY 128

Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
           +   GI D   + ++G+  L  L++   +I D G   ++ +  LT L +F  RI D GA 
Sbjct: 129 IYGNGIGDEGAKLISGMKQLTELSIGHNEIGDEGAKFISEMKQLTELSIFYNRIGDEGAK 188

Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
           Y+   K L  L+I    + D G K I  +  L  L
Sbjct: 189 YISEMKQLTDLDIRHNRIGDKGEKLISGMKKLKRL 223



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 112/222 (50%), Gaps = 1/222 (0%)

Query: 160 LNIKWCNCITDSD-MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
           +N+     + DSD +K +S +  L +L +  +++ D G   +  +++L  L +    + A
Sbjct: 5   VNVNVSENLLDSDNVKFISEMKQLVALFVPTNRIGDEGTKLISEMKQLISLGISKNQIGA 64

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
             +  L  L  L  L++NR ++ D+G +  SK+  L +L++G N+I  + + ++  +  L
Sbjct: 65  KGVKYLCKLKQLIALDINRNRIGDEGAKLISKMKQLTLLHVGDNQIGVKGVKYISEMKQL 124

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
             L +   GIGDEG   ++G+  L  L +   ++G  G + +S +  L  +++ +  I D
Sbjct: 125 TCLYIYGNGIGDEGAKLISGMKQLTELSIGHNEIGDEGAKFISEMKQLTELSIFYNRIGD 184

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
              + ++ +  L  L++   +I D G   ++ +  L  L L+
Sbjct: 185 EGAKYISEMKQLTDLDIRHNRIGDKGEKLISGMKKLKRLCLY 226



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 84/174 (48%), Gaps = 1/174 (0%)

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           ++ +  L  L +   ++G  G + +S +  L S+ +S   I    ++ L  L  L +L++
Sbjct: 22  ISEMKQLVALFVPTNRIGDEGTKLISEMKQLISLGISKNQIGAKGVKYLCKLKQLIALDI 81

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
           +  +I D G   ++ +  LT L +   +I   G  Y+   K L  L I G G+ D G K 
Sbjct: 82  NRNRIGDEGAKLISKMKQLTLLHVGDNQIGVKGVKYISEMKQLTCLYIYGNGIGDEGAKL 141

Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           I  +  LT L++  N  + D+  + IS +  L  L++  +RI   G ++++  +
Sbjct: 142 ISGMKQLTELSIGHN-EIGDEGAKFISEMKQLTELSIFYNRIGDEGAKYISEMK 194



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 95/213 (44%), Gaps = 26/213 (12%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           +I D G + +  +  L SL   +N  I A+G+K    L  L+ LD+ R            
Sbjct: 37  RIGDEGTKLISEMKQLISLGISKNQ-IGAKGVKYLCKLKQLIALDINR------------ 83

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
                        N I D   K +S +  L  L +  +++   G+ Y+  +++LT L + 
Sbjct: 84  -------------NRIGDEGAKLISKMKQLTLLHVGDNQIGVKGVKYISEMKQLTCLYIY 130

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
           G  +       +S +  L  L++   ++ D+G +  S++  L  L++ +N I DE   ++
Sbjct: 131 GNGIGDEGAKLISGMKQLTELSIGHNEIGDEGAKFISEMKQLTELSIFYNRIGDEGAKYI 190

Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
             +  L  L++    IGD+G   ++G+  LK L
Sbjct: 191 SEMKQLTDLDIRHNRIGDKGEKLISGMKKLKRL 223


>gi|56797879|emb|CAH04901.1| internalin A [Listeria monocytogenes]
          Length = 483

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 90  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 143

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KPL
Sbjct: 144 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 195

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 196 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 248

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 249 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 302

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 303 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 360

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 361 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 418

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 419 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 451



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 84  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 136

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 137 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 191

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 192 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 249

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 250 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 304

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 305 LAGLTALTN 313


>gi|48096980|ref|XP_393659.1| PREDICTED: f-box/LRR-repeat protein 14 [Apis mellifera]
 gi|380017700|ref|XP_003692785.1| PREDICTED: F-box/LRR-repeat protein 14-like [Apis florea]
          Length = 481

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 171/321 (53%), Gaps = 44/321 (13%)

Query: 57  SSLLSVDLSG-SDVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLS 112
            +L +++LSG  ++TD+GLI+   ++ + L  L+ + C Q+SD  L  + + L NL  L 
Sbjct: 177 PNLEALNLSGCYNITDAGLINAFCQEYTTLTELNLSLCKQVSDISLGRIVQYLKNLEHLE 236

Query: 113 FRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL--------MKLESLNI 162
                 IT  G+   A  L  L +LDL  C ++   G+ +L G+        + LE L++
Sbjct: 237 LGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGGNLALEHLSL 296

Query: 163 KWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
           + C  ++D  ++ +S GLT LKS+ +S C  +TDSG+ +L  +  L  LNL  C      
Sbjct: 297 QDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLRSC------ 350

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNL 278
            D++S +G  +        L++ G    S+I SL V    F ++I D+ LVH+ +GL NL
Sbjct: 351 -DNVSDIGMAY--------LAEGG----SRISSLDV---SFCDKIGDQALVHISQGLFNL 394

Query: 279 ESLNLDSCGIGDEGLVNLTG-LCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFT 334
           + L+L +C I DEG+  +   L +L+ L +   +++   GL  ++  + +L+ I+L   T
Sbjct: 395 KLLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCT 454

Query: 335 GISDGSLRKLAGLSSLKSLNL 355
            IS   L ++  L  L +LNL
Sbjct: 455 RISTNGLERIMKLPQLSTLNL 475



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/287 (32%), Positives = 142/287 (49%), Gaps = 40/287 (13%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           L G+ NL++L +S C  +TD+G+  A+ +    LT LNL  C   +       +LG +  
Sbjct: 173 LKGVPNLEALNLSGCYNITDAGLINAFCQEYTTLTELNLSLCKQVSDI-----SLGRIVQ 227

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDE 291
              N   L   GC   +  G   +L + +N            L  L+ L+L SC  + D 
Sbjct: 228 YLKNLEHLELGGCCNITNGG---LLCIAWN------------LKKLKRLDLRSCWQVSDL 272

Query: 292 GLVNLTGL--------CNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGS 340
           G+ +L G+          L+ L L D Q +    LRH+S GLT L+SINLSF   I+D  
Sbjct: 273 GIAHLAGVNREAAGGNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSG 332

Query: 341 LRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFK 396
           L+ LA +SSL+ LNL +   ++D G+A L    + ++ LD+ F  +I D    ++ +   
Sbjct: 333 LKHLAKMSSLRELNLRSCDNVSDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLF 392

Query: 397 NLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
           NL+ L +    ++D G+ K  K L  L  LN+ Q   LTDK L  I+
Sbjct: 393 NLKLLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIA 439



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 120/247 (48%), Gaps = 39/247 (15%)

Query: 28  FRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD---VTDSGLIHLK-DCSN 82
            R C  + DL +    GVN +      + G +L    LS  D   ++D  L H+    + 
Sbjct: 263 LRSCWQVSDLGIAHLAGVNRE------AAGGNLALEHLSLQDCQRLSDEALRHVSIGLTT 316

Query: 83  LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
           L+S++ +FC+ I+D GL+HL  +S+L  L+ R  + ++  GM   A              
Sbjct: 317 LKSINLSFCVCITDSGLKHLAKMSSLRELNLRSCDNVSDIGMAYLA-------------- 362

Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL- 200
                    +G  ++ SL++ +C+ I D  +  +S GL NLK L +S  +++D GI  + 
Sbjct: 363 ---------EGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGICKIA 413

Query: 201 KGLQKLTLLNLEGCP-VTAACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVL 257
           K L  L  LN+  C  +T   L +++ ++  L  ++L  C ++S +G E+  K+  L  L
Sbjct: 414 KTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTL 473

Query: 258 NLGFNEI 264
           NLG   +
Sbjct: 474 NLGLWHV 480



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 103/214 (48%), Gaps = 42/214 (19%)

Query: 272 LKGLTNLESLNLDSC-GIGDEGLVN-----LTGLCNLK---CLELSDTQVGSSGLRHLSG 322
           LKG+ NLE+LNL  C  I D GL+N      T L  L    C ++SD  +G    R +  
Sbjct: 173 LKGVPNLEALNLSGCYNITDAGLINAFCQEYTTLTELNLSLCKQVSDISLG----RIVQY 228

Query: 323 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 372
           L NLE + L     I++G L  +A  L  LK L+L +  Q++D G+A L  +        
Sbjct: 229 LKNLEHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGGN 288

Query: 373 -GLTHLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSSLTLL 425
             L HL L    R++D    ++      L+S+     +C   +TD+G+KH+  +SSL  L
Sbjct: 289 LALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVC---ITDSGLKHLAKMSSLREL 345

Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
           NL    N++D          G+  L    SRI+S
Sbjct: 346 NLRSCDNVSD---------IGMAYLAEGGSRISS 370


>gi|85679224|gb|ABC72028.1| InlA [Listeria monocytogenes]
          Length = 794

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 97  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 202

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 255

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 256 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 309

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 310 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 367

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 368 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVKYKV 425

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 426 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 156/355 (43%), Gaps = 95/355 (26%)

Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN               
Sbjct: 53  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 97

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
               NL  +  S +++TD  I  LK L KL              +D L          +N
Sbjct: 98  ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 127

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             Q++D      + + +L  L L  N+ITD  +  LK LTNL  L L S  I D  +  L
Sbjct: 128 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 181

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
           +GL NL+ L   + QV  + L+ L+ LT LE +++S   +SD S+  LA L++L+SL   
Sbjct: 182 SGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT 236

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
             QI+D     +T L  LT+LD                      L + G  L D G   +
Sbjct: 237 NNQISD-----ITPLGILTNLD---------------------ELSLNGNQLKDIGT--L 268

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS----AGLRHLNH 467
             L++LT L+L+ N       L  +SGLT L  L +  ++I++    AGL  L +
Sbjct: 269 ASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 320


>gi|149242645|pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
          Length = 461

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 185/393 (47%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 63  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 116

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ LN  + N +TD  +KPL
Sbjct: 117 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLN--FGNQVTD--LKPL 168

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 169 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 221

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 222 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 275

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 276 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 333

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 334 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 391

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 392 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 424



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 57  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 109

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ LN    Q+TD
Sbjct: 110 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNF-GNQVTD 164

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 165 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 222

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 223 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 277

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 278 LAGLTALTN 286


>gi|395743765|ref|XP_003777984.1| PREDICTED: F-box/LRR-repeat protein 14-like, partial [Pongo abelii]
          Length = 296

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 96/268 (35%), Positives = 151/268 (56%), Gaps = 25/268 (9%)

Query: 224 LSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLE 279
           +  +GSL  LNL+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+
Sbjct: 8   VQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLK 67

Query: 280 SLNLDSC-GIGDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLES 328
           SLNL SC  + D G+ +L G+          L+ L L D Q +    L+H+S GLT L  
Sbjct: 68  SLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRL 127

Query: 329 INLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGAR 383
           +NLSF G ISD  L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  +
Sbjct: 128 LNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDK 186

Query: 384 ITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELI 441
           + D   AY+ +    L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI
Sbjct: 187 VGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELI 246

Query: 442 S-GLTGLVSLNVSN-SRITSAGLRHLNH 467
           +  L+ L  +++   +RIT  GL  +  
Sbjct: 247 AEHLSQLTGIDLYGCTRITKRGLERITQ 274



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 160/312 (51%), Gaps = 53/312 (16%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
           +++  +L++L+ + C QI+D  L  +                  AQ +K       L  L
Sbjct: 8   VQEIGSLRALNLSLCKQITDSSLGRI------------------AQYLKG------LEVL 43

Query: 137 DLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQ 186
           +L  C+ I   G L+   GL +L+SLN++ C  ++D  +  L+G+T         L+ L 
Sbjct: 44  ELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLT 103

Query: 187 IS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSD 242
           +  C K+TD  + ++ +GL  L LLNL  C  ++ A L  LS +GSL  LNL  C  +SD
Sbjct: 104 LQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISD 163

Query: 243 DGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT- 297
            G    + +GSL++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+G+  +  
Sbjct: 164 TGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVR 222

Query: 298 ---GLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
              GL  L   +C+ ++D  +      HLS LT ++      T I+   L ++  L  LK
Sbjct: 223 QMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG--CTRITKRGLERITQLPCLK 279

Query: 352 SLNLDARQITDT 363
            LNL   Q+TD+
Sbjct: 280 VLNLGLWQMTDS 291



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           +TD  L H+ +  + L+ L+ +FC  ISD GL HL  + +L SL+ R  + I+  G+   
Sbjct: 110 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 169

Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           A G + L  LD+  C ++    +    +GL  L+SL++  C+   D   + +  +  L++
Sbjct: 170 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 229

Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           L I  C ++TD G+  + + L +LT ++L GC                        +++ 
Sbjct: 230 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 266

Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
            G E+ +++  LKVLNLG  ++TD
Sbjct: 267 RGLERITQLPCLKVLNLGLWQMTD 290


>gi|386333502|ref|YP_006029672.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
 gi|334195951|gb|AEG69136.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
          Length = 535

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 132/282 (46%), Gaps = 1/282 (0%)

Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
           +L  S + V   G+  L   + LT L+L    +  A    L A   L  LN+NR ++   
Sbjct: 218 TLNASRNGVGGEGVRALVDCKTLTSLDLSENGLGDAEAQRLGASERLTMLNVNRNRIDVP 277

Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
           G    +   +L  L++G N I D  +  L   T L +LN++  G+G  G+  L     L 
Sbjct: 278 GARALAACKTLTSLDIGGNSIGDAGVEALLAHTQLTTLNVERAGVGAHGVRALADCKTLT 337

Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
            L + +  +G  G + L+  T+L +++    GI     + LA  + L +LNL    + D 
Sbjct: 338 SLRIDNNNIGDEGAKTLAASTSLTALHSESNGIGLAGAKALAANTMLTTLNLGHNSVGDA 397

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
           G  A  + T L  L +    ++D+GA  L   K L +L++    + D G +      +LT
Sbjct: 398 GAQAWLANTKLVSLSVRRNGLSDAGAIRLAASKTLTTLDVGDNAIKDTGARAFAANRTLT 457

Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
            LNLS N  + +     ++  T L SL++ N+R+  AG+R L
Sbjct: 458 TLNLSSN-EIGNAGARALAANTRLASLDLRNNRMLEAGVRAL 498



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 124/266 (46%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N + D++ + L     L  L ++ +++   G   L   + LT L++ G  +  A +++L 
Sbjct: 248 NGLGDAEAQRLGASERLTMLNVNRNRIDVPGARALAACKTLTSLDIGGNSIGDAGVEALL 307

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
           A   L  LN+ R  +   G    +   +L  L +  N I DE    L   T+L +L+ +S
Sbjct: 308 AHTQLTTLNVERAGVGAHGVRALADCKTLTSLRIDNNNIGDEGAKTLAASTSLTALHSES 367

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
            GIG  G   L     L  L L    VG +G +     T L S+++   G+SD    +LA
Sbjct: 368 NGIGLAGAKALAANTMLTTLNLGHNSVGDAGAQAWLANTKLVSLSVRRNGLSDAGAIRLA 427

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
              +L +L++    I DTG  A  +   LT L+L    I ++GA  L     L SL++  
Sbjct: 428 ASKTLTTLDVGDNAIKDTGARAFAANRTLTTLNLSSNEIGNAGARALAANTRLASLDLRN 487

Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNC 431
             + +AGV+ +    +L+ L +S NC
Sbjct: 488 NRMLEAGVRALLVNRTLSSLGVSFNC 513



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 118/276 (42%), Gaps = 3/276 (1%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           +L S+DLS + + D+    L     L  L+ N   +I   G   L     LTSL     N
Sbjct: 239 TLTSLDLSENGLGDAEAQRLGASERLTMLNVNRN-RIDVPGARALAACKTLTSLDIG-GN 296

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
           +I   G++A      L  L++ER      G+  L     L SL I   N I D   K L+
Sbjct: 297 SIGDAGVEALLAHTQLTTLNVERAGVGAHGVRALADCKTLTSLRID-NNNIGDEGAKTLA 355

Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
             T+L +L    + +  +G   L     LT LNL    V  A   +  A   L  L++ R
Sbjct: 356 ASTSLTALHSESNGIGLAGAKALAANTMLTTLNLGHNSVGDAGAQAWLANTKLVSLSVRR 415

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
             LSD G  + +   +L  L++G N I D           L +LNL S  IG+ G   L 
Sbjct: 416 NGLSDAGAIRLAASKTLTTLDVGDNAIKDTGARAFAANRTLTTLNLSSNEIGNAGARALA 475

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
               L  L+L + ++  +G+R L     L S+ +SF
Sbjct: 476 ANTRLASLDLRNNRMLEAGVRALLVNRTLSSLGVSF 511


>gi|115504803|ref|XP_001219194.1| leucine-rich repeat protein (LRRP) [Trypanosoma brucei TREU927]
 gi|83642676|emb|CAJ16709.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
          Length = 735

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 121/469 (25%), Positives = 195/469 (41%), Gaps = 80/469 (17%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL----- 111
           S L  +DL G  +T   +  L  C+ L  L  + C      GL  +  LSNL SL     
Sbjct: 253 SHLFRLDLRGVHLTYRVVYSLSKCTGLTELYVSSC-----EGLSGVAWLSNLESLGDLDV 307

Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
            +R+N   T       A L  L  LDL   +  +  L N+     L  L++ +C  +   
Sbjct: 308 QWRKNLKHTGD---VLACLPLLRVLDLSGTSISNESLWNISESKLLRRLDLSFCGGV--K 362

Query: 172 DMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           D+ P+S +  L+ L +  C+ +T+ G+  L  L  L +LN+   P+ +  L ++S++ SL
Sbjct: 363 DISPISDIVTLEELNLKGCTSITE-GVDKLGNLVNLHILNMSNTPLQSGFLYNISSIESL 421

Query: 231 FYLNLNRCQ-----------------------LSDDGCEKFSKIGSLKVLNLGFNEITDE 267
             L+L+ C                           +G     ++  L++LN+    +TDE
Sbjct: 422 VELDLSSCWGVASLDSSVQTAVRMRKGSYPLARHIEGINALGRLPKLRLLNMSSTPVTDE 481

Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT------QVGSSGLRHLS 321
           CL  L+   +L  LNL  C      L +++ L ++K LE  D       + G+  LR L 
Sbjct: 482 CLHGLQMCKSLVWLNLSLCA----NLTDVSPLSSVKTLEEVDLGCCGNLKWGAGSLRRLP 537

Query: 322 GLTNLESINLSFTGISD----------GSLRKLAGLSSLKSLNLDARQITDTG------- 364
               L  ++L  T I+D          G + ++ G   +  L+     I   G       
Sbjct: 538 ---QLRILDLKNTVITDHCLGDVTYGGGVVSRMLGRCGMADLSFSRWSIRRGGNLVRLDL 594

Query: 365 --------LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
                   +A LTS+T L  L   G R    G   L     L  L++ G  +TD  ++ +
Sbjct: 595 SSCWGLTDIAHLTSITTLEELRFTGCRNLKDGVDALGQLPVLHLLDLSGTSITDDSLQGL 654

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
               SL  LN+S   NLTD  +  +S ++ L  LN+  S+    G+  L
Sbjct: 655 STCRSLVTLNISSCANLTD--VSPLSRISSLEELNLQKSKHIRRGIDEL 701



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 151/386 (39%), Gaps = 80/386 (20%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           +DLSG+ +++  L ++ +   L+ LD +FC  + D  +  +  +  L  L+ +   +IT 
Sbjct: 329 LDLSGTSISNESLWNISESKLLRRLDLSFCGGVKD--ISPISDIVTLEELNLKGCTSIT- 385

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
           +G+     L+NL  L++       G L N+  +  L  L++  C  +   D    + +  
Sbjct: 386 EGVDKLGNLVNLHILNMSNTPLQSGFLYNISSIESLVELDLSSCWGVASLDSSVQTAVRM 445

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC--- 238
            K        +   GI  L  L KL LLN+   PVT  CL  L    SL +LNL+ C   
Sbjct: 446 RKGSYPLARHI--EGINALGRLPKLRLLNMSSTPVTDECLHGLQMCKSLVWLNLSLCANL 503

Query: 239 ------------QLSDDGC--------EKFSKIGSLKVLNLGFNEITDECL--------- 269
                       +  D GC            ++  L++L+L    ITD CL         
Sbjct: 504 TDVSPLSSVKTLEEVDLGCCGNLKWGAGSLRRLPQLRILDLKNTVITDHCLGDVTYGGGV 563

Query: 270 ----------------------------------------VHLKGLTNLESLNLDSCGIG 289
                                                    HL  +T LE L    C   
Sbjct: 564 VSRMLGRCGMADLSFSRWSIRRGGNLVRLDLSSCWGLTDIAHLTSITTLEELRFTGCRNL 623

Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLS 348
            +G+  L  L  L  L+LS T +    L+ LS   +L ++N+S    ++D S   L+ +S
Sbjct: 624 KDGVDALGQLPVLHLLDLSGTSITDDSLQGLSTCRSLVTLNISSCANLTDVS--PLSRIS 681

Query: 349 SLKSLNLDARQITDTGLAALTSLTGL 374
           SL+ LNL   +    G+  L SL  L
Sbjct: 682 SLEELNLQKSKHIRRGIDELVSLPRL 707



 Score = 42.0 bits (97), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 157/337 (46%), Gaps = 40/337 (11%)

Query: 159 SLN-IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN---LEGC 214
           SLN + +  C    D+  LSG + L  L++      D  +++ K L++L  L    L   
Sbjct: 91  SLNKLHFIECSGSCDLGMLSGHSFLSELRVD----VDGEVSHYKALRELPSLRTLWLRNS 146

Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
            +T      +  + +L  L L R  L+    E  +++  L+ L+L    + D+CL  +  
Sbjct: 147 NMTLTDFFHVGEVDTLESLTL-RGALNFKCLEAVARLPRLRALDLSETLVNDKCLHAISA 205

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD----TQVGS-SGLRHLSGLTNLESI 329
              L+ L L SC    + +  LT + +L+ L LS      +VG+   L HL  L +L  +
Sbjct: 206 CKTLQQLGLSSCKRLRD-VSPLTQIASLEELNLSHCENLKEVGALYRLSHLFRL-DLRGV 263

Query: 330 NLSF---------TGISD------GSLRKLAGLSSLKSL-NLDA---RQITDTGLAALTS 370
           +L++         TG+++        L  +A LS+L+SL +LD    + +  TG   L  
Sbjct: 264 HLTYRVVYSLSKCTGLTELYVSSCEGLSGVAWLSNLESLGDLDVQWRKNLKHTG-DVLAC 322

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQ 429
           L  L  LDL G  I++     +   K LR L++   GG+ D  +  I D+ +L  LNL +
Sbjct: 323 LPLLRVLDLSGTSISNESLWNISESKLLRRLDLSFCGGVKD--ISPISDIVTLEELNL-K 379

Query: 430 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
            C    + ++ +  L  L  LN+SN+ + S  L +++
Sbjct: 380 GCTSITEGVDKLGNLVNLHILNMSNTPLQSGFLYNIS 416


>gi|290988772|ref|XP_002677066.1| predicted protein [Naegleria gruberi]
 gi|284090672|gb|EFC44322.1| predicted protein [Naegleria gruberi]
          Length = 289

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 120/241 (49%), Gaps = 1/241 (0%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N + D+    L  +T L +L+I  + + D+ +  +  +++LT L+LE   +      S+S
Sbjct: 44  NILNDNWFNMLGRMTQLTTLEIGNNLIDDNMVKLISEMKQLTGLDLEINQIFNEGAKSIS 103

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            L +L YLN+    ++D+G E  S++ +L  L +    IT +    +  L NL  LN+  
Sbjct: 104 ELRNLTYLNIGNNPINDEGIESISQLDNLTDLTVSSLRITSKSAKFISKLNNLTLLNIAY 163

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKL 344
             IGDEG   ++ + +LK L++S   +   G + +S L  L  + +S    I D   R +
Sbjct: 164 NNIGDEGAKFISEIKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFSIGDEGARMI 223

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
           + +  L  L +    I + G  +++ +  LTHLD+    I   G + +R+ K+L  L I 
Sbjct: 224 SEMKQLNELYIQDCFIGNAGAISISRMDKLTHLDISENEIQIEGESVIRDMKHLSYLSIE 283

Query: 405 G 405
           G
Sbjct: 284 G 284



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 102/200 (51%)

Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
           N + D     L  +T L +L + +  I D  +  ++ +  L  L+L   Q+ + G + +S
Sbjct: 44  NILNDNWFNMLGRMTQLTTLEIGNNLIDDNMVKLISEMKQLTGLDLEINQIFNEGAKSIS 103

Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
            L NL  +N+    I+D  +  ++ L +L  L + + +IT      ++ L  LT L++  
Sbjct: 104 ELRNLTYLNIGNNPINDEGIESISQLDNLTDLTVSSLRITSKSAKFISKLNNLTLLNIAY 163

Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
             I D GA ++   K+L+ L+I   G++  G K I +L  LT+L +SQN ++ D+   +I
Sbjct: 164 NNIGDEGAKFISEIKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFSIGDEGARMI 223

Query: 442 SGLTGLVSLNVSNSRITSAG 461
           S +  L  L + +  I +AG
Sbjct: 224 SEMKQLNELYIQDCFIGNAG 243



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 17/284 (5%)

Query: 163 KWCNCITDSDMKPLSGLTN--------------LKSLQISCSKVTDSGIAYLKGLQKLTL 208
           +W N I D     LS + N                S+  + + + D+    L  + +LT 
Sbjct: 5   QWLNVIRDR--SELSMMANNHLVNQVNNEFLDCFVSITFARNILNDNWFNMLGRMTQLTT 62

Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
           L +    +    +  +S +  L  L+L   Q+ ++G +  S++ +L  LN+G N I DE 
Sbjct: 63  LEIGNNLIDDNMVKLISEMKQLTGLDLEINQIFNEGAKSISELRNLTYLNIGNNPINDEG 122

Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
           +  +  L NL  L + S  I  +    ++ L NL  L ++   +G  G + +S + +L+ 
Sbjct: 123 IESISQLDNLTDLTVSSLRITSKSAKFISKLNNLTLLNIAYNNIGDEGAKFISEIKSLKI 182

Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDS 387
           +++S  GIS    + ++ L  L  L +     I D G   ++ +  L  L +    I ++
Sbjct: 183 LDISLNGISPIGAKSISELDQLTVLYISQNFSIGDEGARMISEMKQLNELYIQDCFIGNA 242

Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
           GA  +     L  L+I    +   G   I+D+  L+ L++   C
Sbjct: 243 GAISISRMDKLTHLDISENEIQIEGESVIRDMKHLSYLSIEGQC 286



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 135/289 (46%), Gaps = 17/289 (5%)

Query: 44  VNDKWMDVIASQGS-SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
           V  +W++VI  +   S+++ +   + V +  L    DC    S+ F   I ++D     L
Sbjct: 2   VTKQWLNVIRDRSELSMMANNHLVNQVNNEFL----DC--FVSITFARNI-LNDNWFNML 54

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
             ++ LT+L    NN I    +K  + +  L  LDLE     + G  ++  L  L  LNI
Sbjct: 55  GRMTQLTTLEIG-NNLIDDNMVKLISEMKQLTGLDLEINQIFNEGAKSISELRNLTYLNI 113

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
              N I D  ++ +S L NL  L +S  ++T     ++  L  LTLLN+    +      
Sbjct: 114 G-NNPINDEGIESISQLDNLTDLTVSSLRITSKSAKFISKLNNLTLLNIAYNNIGDEGAK 172

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESL 281
            +S + SL  L+++   +S  G +  S++  L VL +  N  I DE    +  +  L  L
Sbjct: 173 FISEIKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFSIGDEGARMISEMKQLNEL 232

Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG------LRHLSGLT 324
            +  C IG+ G ++++ +  L  L++S+ ++   G      ++HLS L+
Sbjct: 233 YIQDCFIGNAGAISISRMDKLTHLDISENEIQIEGESVIRDMKHLSYLS 281



 Score = 44.7 bits (104), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 2/110 (1%)

Query: 357 ARQI-TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
           AR I  D     L  +T LT L++    I D+    +   K L  L++    + + G K 
Sbjct: 42  ARNILNDNWFNMLGRMTQLTTLEIGNNLIDDNMVKLISEMKQLTGLDLEINQIFNEGAKS 101

Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           I +L +LT LN+  N  + D+ +E IS L  L  L VS+ RITS   + +
Sbjct: 102 ISELRNLTYLNIGNNP-INDEGIESISQLDNLTDLTVSSLRITSKSAKFI 150


>gi|219821396|gb|ACL37842.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 40  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 94  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVKYKV 368

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  L+NL 
Sbjct: 32  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 88  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 251

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 252 ISPLAGLTALTN 263


>gi|71912406|gb|AAZ53235.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 116/365 (31%), Positives = 180/365 (49%), Gaps = 38/365 (10%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTNLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD  +  ++ L+ L+ L  
Sbjct: 313 LAGLTALTSLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFF 368

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
              +++D  +++L SLT +  L     +I+D     L N   +  L +     T+A V +
Sbjct: 369 YNNKVSD--VSSLASLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424

Query: 416 IKDLS 420
             ++S
Sbjct: 425 KANVS 429



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 155/353 (43%), Gaps = 95/353 (26%)

Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN               
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
               NL  +  S +++TD  I  LK L KL              +D L          +N
Sbjct: 99  ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             Q++D      + + +L  L L  N+ITD  +  LK LTNL  L L S  I D  +  L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
           +GL NL+ L   + QV  + L+ L+ LT LE +++S   +SD S+  LA L++L+SL   
Sbjct: 183 SGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT 237

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
             QI+D     +T L  LT+LD                      L + G  L D G   +
Sbjct: 238 NNQISD-----ITPLGILTNLD---------------------ELSLNGNQLKDIGT--L 269

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS----AGLRHL 465
             L++LT L+L+ N       L  +SGLT L  L +  ++I++    AGL  L
Sbjct: 270 ASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 319


>gi|290972775|ref|XP_002669126.1| predicted protein [Naegleria gruberi]
 gi|284082669|gb|EFC36382.1| predicted protein [Naegleria gruberi]
          Length = 467

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 169/361 (46%), Gaps = 43/361 (11%)

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES----- 159
           L+ L S+  + NN I    M++ A +  L+ LD+  C R      NL+G+  L S     
Sbjct: 63  LTQLKSIVLKFNN-INEYEMESIASMNKLISLDI-GCAR-----TNLEGIKILSSKDNFT 115

Query: 160 -LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT---DSGIAYLKGLQKLTLLNLEGCP 215
            LNI++        M+ +S +T+L+ L IS + ++        YLK L+KLT L +    
Sbjct: 116 ELNIEFSFFDQVPYMEYVSKMTDLRKLDISNNPISLNRAKSANYLKSLEKLTDLTVTYLD 175

Query: 216 VTAACLDSLSALG---------------------SLFYL---NLNRCQLSDDGCEKFSK- 250
           +    L S+S L                      S+F L   ++    + ++G +  S  
Sbjct: 176 MDLEFLKSISNLKFLTSLSIYGNLVGIEGVKIICSMFQLKKLDITLNAIGEEGAKLISNS 235

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
           +  L  L +G N+I D+    +  +  L +L+L+   IG +GL  +  +  LK L L+  
Sbjct: 236 LKQLNTLRIGDNQIGDKGAESISSMKTLTALDLEESNIGPQGLEFICQMDQLKSLMLNFN 295

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL-T 369
            +G S L  ++ LTNL  I+L  T I    ++ ++ ++ L+++N+   ++ D  L  +  
Sbjct: 296 TIGGSRL-PINALTNLTEISLVLTNIGIEIVKSISLITKLRNVNISDNRLGDECLEIIGN 354

Query: 370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 429
           SL  LT LD+    +T++G  YL + KNL  L      L D  ++H+  L  L  L ++ 
Sbjct: 355 SLFNLTELDISENNMTENGTKYLSSLKNLTHLNAEDNRLNDESIQHLCSLKKLKSLYINN 414

Query: 430 N 430
           N
Sbjct: 415 N 415



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 181/393 (46%), Gaps = 42/393 (10%)

Query: 40  QYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL 99
           ++  +N+  M+ IAS  + L+S+D+  +     G+  L    N   L+  F        +
Sbjct: 72  KFNNINEYEMESIASM-NKLISLDIGCARTNLEGIKILSSKDNFTELNIEFSFFDQVPYM 130

Query: 100 EHLRGLSNLTSLSFRRN-----NAITAQGMKAFAGLINL----VKLDLE----------- 139
           E++  +++L  L    N      A +A  +K+   L +L    + +DLE           
Sbjct: 131 EYVSKMTDLRKLDISNNPISLNRAKSANYLKSLEKLTDLTVTYLDMDLEFLKSISNLKFL 190

Query: 140 RCTRIHGGLVNLKG------LMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSKV 192
               I+G LV ++G      + +L+ L+I   N I +   K +S  L  L +L+I  +++
Sbjct: 191 TSLSIYGNLVGIEGVKIICSMFQLKKLDIT-LNAIGEEGAKLISNSLKQLNTLRIGDNQI 249

Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL--FYLNLNRC---QLSDDGCEK 247
            D G   +  ++ LT L+LE   +    L+ +  +  L    LN N     +L  +    
Sbjct: 250 GDKGAESISSMKTLTALDLEESNIGPQGLEFICQMDQLKSLMLNFNTIGGSRLPINALTN 309

Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLE 306
            ++I SL + N+G      E +  +  +T L ++N+    +GDE L  +   L NL  L+
Sbjct: 310 LTEI-SLVLTNIGI-----EIVKSISLITKLRNVNISDNRLGDECLEIIGNSLFNLTELD 363

Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
           +S+  +  +G ++LS L NL  +N     ++D S++ L  L  LKSL ++  Q+ D G A
Sbjct: 364 ISENNMTENGTKYLSSLKNLTHLNAEDNRLNDESIQHLCSLKKLKSLYINNNQVGDEGFA 423

Query: 367 ALT-SLTGLTHLDLFGARITDSGAAYLRNFKNL 398
            +  S+  L  +     + T+ G   L++ K+L
Sbjct: 424 LIANSMKQLRLVHAHNNKETEIGRTLLKSRKHL 456



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 98/224 (43%), Gaps = 10/224 (4%)

Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
           S +  LK + L FN I +  +  +  +  L SL++       EG+  L+   N   L + 
Sbjct: 61  SSLTQLKSIVLKFNNINEYEMESIASMNKLISLDIGCARTNLEGIKILSSKDNFTELNIE 120

Query: 309 DT---QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
            +   QV    + ++S +T+L  +++S   IS    +    L SL+ L        D  L
Sbjct: 121 FSFFDQVPY--MEYVSKMTDLRKLDISNNPISLNRAKSANYLKSLEKLTDLTVTYLDMDL 178

Query: 366 AALTSLTG---LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD-LSS 421
             L S++    LT L ++G  +   G   + +   L+ L+I    + + G K I + L  
Sbjct: 179 EFLKSISNLKFLTSLSIYGNLVGIEGVKIICSMFQLKKLDITLNAIGEEGAKLISNSLKQ 238

Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           L  L +  N  + DK  E IS +  L +L++  S I   GL  +
Sbjct: 239 LNTLRIGDN-QIGDKGAESISSMKTLTALDLEESNIGPQGLEFI 281


>gi|255525367|ref|ZP_05392306.1| putative cell wall binding repeat 2-containing protein [Clostridium
           carboxidivorans P7]
 gi|296187977|ref|ZP_06856369.1| leucine Rich repeat protein [Clostridium carboxidivorans P7]
 gi|255510938|gb|EET87239.1| putative cell wall binding repeat 2-containing protein [Clostridium
           carboxidivorans P7]
 gi|296047103|gb|EFG86545.1| leucine Rich repeat protein [Clostridium carboxidivorans P7]
          Length = 660

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 101/319 (31%), Positives = 162/319 (50%), Gaps = 45/319 (14%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
           +KD S L++L     + ++D  +  L  L NLT                      NL KL
Sbjct: 373 IKDISGLENLTNLQILALTDTEVSDLSPLKNLT----------------------NLQKL 410

Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
           +L RC ++   +  LK L  L++LN+ WC  +  SD+ PL  LTNL+ L +   +++D+ 
Sbjct: 411 NL-RCAQV-SDISPLKYLTNLQNLNL-WCAQV--SDISPLKDLTNLQKLDLHIPQISDT- 464

Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLK 255
            + LK L  L  L+L+   V  + ++ L  L +L  LNL+R Q+SD  G +  + +  L 
Sbjct: 465 -SALKNLTNLQQLSLQYTQV--SHINGLENLTNLQQLNLDRTQVSDISGLKDLTNLQKLN 521

Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
           + N   + I+      LK LTNL+ L+L S  + D  +  L  L NL+ L+L++ QV  S
Sbjct: 522 LNNNQVSNIS-----PLKYLTNLQELDLSSNQVSD--ISPLKYLTNLQKLDLNNNQV--S 572

Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
            +  L  LTNL+ + L+   ISD  +  L  L +L+ L L   QI+D  ++ L  L  L 
Sbjct: 573 DVSPLKYLTNLQDLLLNVNQISD--ISPLKDLINLQGLYLGINQISD--ISPLKYLINLR 628

Query: 376 HLDLFGARITDSGAAYLRN 394
            L+L   +++D+    L+N
Sbjct: 629 ELNLKHTQVSDADKQSLKN 647



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 162/342 (47%), Gaps = 59/342 (17%)

Query: 116 NNAITAQGM---KAFAGLIN-----LVKLDLERCTRI-------HGGLVNLKGLMKLESL 160
           NN +T +     KA    IN     L+K D+ + T +       H  + ++ GL  L +L
Sbjct: 326 NNIVTFKDKNLEKAIRATINKPTGELLKSDVNQITELDVSIINEHTDIKDISGLENLTNL 385

Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAA 219
            I        SD+ PL  LTNL+ L + C++V+D S + YL  LQ L L     C    +
Sbjct: 386 QILALTDTEVSDLSPLKNLTNLQKLNLRCAQVSDISPLKYLTNLQNLNLW----C-AQVS 440

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG---LT 276
            +  L  L +L  L+L+  Q+SD    K   + +L+ L+L + +++     H+ G   LT
Sbjct: 441 DISPLKDLTNLQKLDLHIPQISDTSALK--NLTNLQQLSLQYTQVS-----HINGLENLT 493

Query: 277 NLESLNLDSCGIGD--------------------EGLVNLTGLCNLKCLELSDTQVGSSG 316
           NL+ LNLD   + D                      +  L  L NL+ L+LS  QV  S 
Sbjct: 494 NLQQLNLDRTQVSDISGLKDLTNLQKLNLNNNQVSNISPLKYLTNLQELDLSSNQV--SD 551

Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
           +  L  LTNL+ ++L+   +SD S   L  L++L+ L L+  QI+D  ++ L  L  L  
Sbjct: 552 ISPLKYLTNLQKLDLNNNQVSDVS--PLKYLTNLQDLLLNVNQISD--ISPLKDLINLQG 607

Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
           L L   +I+D   + L+   NLR L +    ++DA  + +K+
Sbjct: 608 LYLGINQISD--ISPLKYLINLRELNLKHTQVSDADKQSLKN 647



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 89/166 (53%), Gaps = 19/166 (11%)

Query: 261 FNEITD-ECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGL--CNLKCLELSDTQVGSSG 316
            NE TD + +  L+ LTNL+ L L    + D   L NLT L   NL+C ++SD       
Sbjct: 367 INEHTDIKDISGLENLTNLQILALTDTEVSDLSPLKNLTNLQKLNLRCAQVSD------- 419

Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
           +  L  LTNL+++NL    +SD  +  L  L++L+ L+L   QI+DT  +AL +LT L  
Sbjct: 420 ISPLKYLTNLQNLNLWCAQVSD--ISPLKDLTNLQKLDLHIPQISDT--SALKNLTNLQQ 475

Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
           L L   +++      L N  NL+ L +    ++D  +  +KDL++L
Sbjct: 476 LSLQYTQVSHING--LENLTNLQQLNLDRTQVSD--ISGLKDLTNL 517



 Score = 38.5 bits (88), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 72  SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
           S +  LK  +NLQ LD +   Q+SD  +  L+ L+NL  L    N       +K    L 
Sbjct: 528 SNISPLKYLTNLQELDLS-SNQVSD--ISPLKYLTNLQKLDLNNNQVSDVSPLKYLTNLQ 584

Query: 132 NLVKLDLERCTRIHG--GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
           +L+ L++ + + I     L+NL+GL     L I        SD+ PL  L NL+ L +  
Sbjct: 585 DLL-LNVNQISDISPLKDLINLQGLY----LGINQI-----SDISPLKYLINLRELNLKH 634

Query: 190 SKVTDSGIAYLK 201
           ++V+D+    LK
Sbjct: 635 TQVSDADKQSLK 646


>gi|149242641|pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
 gi|149242643|pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
          Length = 461

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 185/393 (47%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 63  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 116

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ LN  + N +TD  +KPL
Sbjct: 117 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLN--FGNQVTD--LKPL 168

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 169 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 221

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 222 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 275

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 276 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 333

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 334 SNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 391

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 392 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 424



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 57  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 109

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ LN    Q+TD
Sbjct: 110 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNF-GNQVTD 164

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 165 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 222

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 223 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 277

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 278 LAGLTALTN 286


>gi|290980538|ref|XP_002672989.1| predicted protein [Naegleria gruberi]
 gi|284086569|gb|EFC40245.1| predicted protein [Naegleria gruberi]
          Length = 315

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 94/186 (50%)

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           +S +  L  LN+   ++ D G +  +++  L  LN+G N I  +    +  +  L SL+ 
Sbjct: 125 ISEMKQLTSLNIYNNRIGDVGAKYINEMKQLTSLNIGGNRIGIKGAKLISEMKQLTSLHT 184

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
            +  IGDEG   ++ +  L  L++   Q+G  G + +SG+  L S+++    I D   + 
Sbjct: 185 YNNRIGDEGAKYISEMKQLTSLDIGGNQIGDEGAKLISGMKRLTSLHIYNNRIGDEGAKL 244

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           ++G+  L SLN+   +I D G   ++ +  LT L ++  RI D GA Y+   K L SL I
Sbjct: 245 ISGMKQLTSLNIGVNEIGDEGAKLISGMKRLTSLQIYNNRIGDEGAKYISEMKQLTSLNI 304

Query: 404 CGGGLT 409
            G  L 
Sbjct: 305 GGNELV 310



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 106/204 (51%), Gaps = 2/204 (0%)

Query: 160 LNIKWCNCITDSDMKP--LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
           +N+K+ + + DS  +   +S +  L SL I  +++ D G  Y+  +++LT LN+ G  + 
Sbjct: 107 VNVKFSSWLLDSFERAEFISEMKQLTSLNIYNNRIGDVGAKYINEMKQLTSLNIGGNRIG 166

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
                 +S +  L  L+    ++ D+G +  S++  L  L++G N+I DE    + G+  
Sbjct: 167 IKGAKLISEMKQLTSLHTYNNRIGDEGAKYISEMKQLTSLDIGGNQIGDEGAKLISGMKR 226

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           L SL++ +  IGDEG   ++G+  L  L +   ++G  G + +SG+  L S+ +    I 
Sbjct: 227 LTSLHIYNNRIGDEGAKLISGMKQLTSLNIGVNEIGDEGAKLISGMKRLTSLQIYNNRIG 286

Query: 338 DGSLRKLAGLSSLKSLNLDARQIT 361
           D   + ++ +  L SLN+   ++ 
Sbjct: 287 DEGAKYISEMKQLTSLNIGGNELV 310



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 89/174 (51%), Gaps = 1/174 (0%)

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           ++ +  L  L + + ++G  G ++++ +  L S+N+    I     + ++ +  L SL+ 
Sbjct: 125 ISEMKQLTSLNIYNNRIGDVGAKYINEMKQLTSLNIGGNRIGIKGAKLISEMKQLTSLHT 184

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
              +I D G   ++ +  LT LD+ G +I D GA  +   K L SL I    + D G K 
Sbjct: 185 YNNRIGDEGAKYISEMKQLTSLDIGGNQIGDEGAKLISGMKRLTSLHIYNNRIGDEGAKL 244

Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           I  +  LT LN+  N  + D+  +LISG+  L SL + N+RI   G ++++  +
Sbjct: 245 ISGMKQLTSLNIGVN-EIGDEGAKLISGMKRLTSLQIYNNRIGDEGAKYISEMK 297



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 94/190 (49%)

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           S +  E  S++  L  LN+  N I D    ++  +  L SLN+    IG +G   ++ + 
Sbjct: 118 SFERAEFISEMKQLTSLNIYNNRIGDVGAKYINEMKQLTSLNIGGNRIGIKGAKLISEMK 177

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            L  L   + ++G  G +++S +  L S+++    I D   + ++G+  L SL++   +I
Sbjct: 178 QLTSLHTYNNRIGDEGAKYISEMKQLTSLDIGGNQIGDEGAKLISGMKRLTSLHIYNNRI 237

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
            D G   ++ +  LT L++    I D GA  +   K L SL+I    + D G K+I ++ 
Sbjct: 238 GDEGAKLISGMKQLTSLNIGVNEIGDEGAKLISGMKRLTSLQIYNNRIGDEGAKYISEMK 297

Query: 421 SLTLLNLSQN 430
            LT LN+  N
Sbjct: 298 QLTSLNIGGN 307


>gi|307215039|gb|EFN89866.1| F-box/LRR-repeat protein 14 [Harpegnathos saltator]
          Length = 457

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 142/287 (49%), Gaps = 41/287 (14%)

Query: 68  DVTDSGLIHLKDC-SNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMK 125
            VTD+ L  +     NL+ L+   C  I++ GL  +  GL  L  L  R    ++ QG+ 
Sbjct: 193 QVTDTSLGRIAQYLKNLEHLELGGCCNITNTGLMVIAWGLKKLKRLDLRSCWHVSDQGIA 252

Query: 126 AFAGL-------INLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPL 176
             AGL       + L  L L+ C R+    L N+  GL  L+S+N+ +C CITDS +K L
Sbjct: 253 YLAGLNREADGNLALEHLSLQDCQRLSDEALRNVSLGLTTLKSINLSFCVCITDSGVKHL 312

Query: 177 SGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTA--ACLDSLSALGSLFY 232
           + +++L+ L + SC  ++D G+AYL +G  ++T L++  C      A +     L +L  
Sbjct: 313 ARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLFNLKS 372

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDE 291
           L+L+ CQ+SD+G  K +K                        L +LE+LN+  C  + D 
Sbjct: 373 LSLSACQISDEGICKIAKT-----------------------LHDLETLNIGQCSRLTDR 409

Query: 292 GLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGI 336
            L  +   + +LKC++L   T++ +SGL  +  L  L ++NL    +
Sbjct: 410 SLHTMAENMKHLKCIDLYGCTKITTSGLERIMKLPQLSTLNLGLWHV 456



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 101/312 (32%), Positives = 160/312 (51%), Gaps = 43/312 (13%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLF 231
           L G+ NL++L +S C  +TD+GI   + + L  LT+LNL  C  VT   L  ++     +
Sbjct: 150 LRGVPNLEALNLSGCYNITDTGIMSGFCQELPTLTVLNLSLCKQVTDTSLGRIAQ----Y 205

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGD 290
             NL   +L           G   + N G        +V   GL  L+ L+L SC  + D
Sbjct: 206 LKNLEHLELG----------GCCNITNTGL-------MVIAWGLKKLKRLDLRSCWHVSD 248

Query: 291 EGLVNLTGL-------CNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGS 340
           +G+  L GL         L+ L L D Q +    LR++S GLT L+SINLSF   I+D  
Sbjct: 249 QGIAYLAGLNREADGNLALEHLSLQDCQRLSDEALRNVSLGLTTLKSINLSFCVCITDSG 308

Query: 341 LRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFK 396
           ++ LA +SSL+ LNL +   I+D G+A L    + +T LD+ F  +I D    ++ +   
Sbjct: 309 VKHLARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLF 368

Query: 397 NLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN 454
           NL+SL +    ++D G+ K  K L  L  LN+ Q   LTD++L  ++  +  L  +++  
Sbjct: 369 NLKSLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDRSLHTMAENMKHLKCIDLYG 428

Query: 455 -SRITSAGLRHL 465
            ++IT++GL  +
Sbjct: 429 CTKITTSGLERI 440



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 104/333 (31%), Positives = 161/333 (48%), Gaps = 53/333 (15%)

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG--- 178
           Q    FA L+      ++  +  HG    L+G+  LE+LN+  C  ITD+ +  +SG   
Sbjct: 121 QAPALFASLVRRGVKKVQVLSLRHGLSAVLRGVPNLEALNLSGCYNITDTGI--MSGFCQ 178

Query: 179 -LTNLKSLQIS-CSKVTDSGIA----YLK-----------------------GLQKLTLL 209
            L  L  L +S C +VTD+ +     YLK                       GL+KL  L
Sbjct: 179 ELPTLTVLNLSLCKQVTDTSLGRIAQYLKNLEHLELGGCCNITNTGLMVIAWGLKKLKRL 238

Query: 210 NLEGC-PVTAACLDSLSALG-------SLFYLNLNRCQ-LSDDGCEKFS-KIGSLKVLNL 259
           +L  C  V+   +  L+ L        +L +L+L  CQ LSD+     S  + +LK +NL
Sbjct: 239 DLRSCWHVSDQGIAYLAGLNREADGNLALEHLSLQDCQRLSDEALRNVSLGLTTLKSINL 298

Query: 260 GFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSS 315
            F   ITD  + HL  +++L  LNL SC  I D G+  L  G   +  L++S   ++G  
Sbjct: 299 SFCVCITDSGVKHLARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQ 358

Query: 316 GLRHLS-GLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNL-DARQITDTGLAALT-SL 371
            L H+S GL NL+S++LS   ISD  + K+A  L  L++LN+    ++TD  L  +  ++
Sbjct: 359 ALVHISQGLFNLKSLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDRSLHTMAENM 418

Query: 372 TGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 403
             L  +DL+G  +IT SG   +     L +L +
Sbjct: 419 KHLKCIDLYGCTKITTSGLERIMKLPQLSTLNL 451


>gi|290991638|ref|XP_002678442.1| leucine rich repeat domain-containing protein [Naegleria gruberi]
 gi|284092054|gb|EFC45698.1| leucine rich repeat domain-containing protein [Naegleria gruberi]
          Length = 646

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 165/343 (48%), Gaps = 38/343 (11%)

Query: 64  LSGSDVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLSFRRNNAITA 121
           L+ S VT  +GL  L+  S+ +S+    C  +++G L+ L  L  +L SL+   NN I +
Sbjct: 256 LTSSAVTSLTGLTSLEMVSSHRSIGSKGCKYLANGKLKCLTSLDVSLESLNETNNNGIKS 315

Query: 122 QGMKAFAG--LINLVKLDL-------ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
            G K  A   L +L++L+L       + C  +  G     GL+ L  LN+  C    D+ 
Sbjct: 316 NGCKYLANGNLNHLIQLNLSGNRIYSKGCQYLSNG-----GLLTLTHLNLSCCALDFDAC 370

Query: 173 MKPLSG-LTNLKSLQISCSKVTDSGIAYL--KGLQKLTLLNLEGCPVTAA--CLDSLSAL 227
               +G L NL  L +S + +  SGI ++    +  LT L+LE C V  +       + +
Sbjct: 371 QYLGNGNLKNLVQLNLSKNMLIGSGIQFIFNGNMPNLTWLSLESCEVRPSDCAFIGNADV 430

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL----------GFNEITDECLVHLKGLTN 277
            SL YLN++   +SD+GC+  +K   L + +L          GF E+T        G+  
Sbjct: 431 SSLVYLNISNNPISDEGCKNLAKAQFLSLQDLYLRDCQIGSSGFAELT------ANGIGK 484

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           L  L +D+  IGDEG +N++ L  L  L +S+  +GS G R +S L  L+ + +S   + 
Sbjct: 485 LTKLYVDNNNIGDEGCLNISSLPFLNLLSVSNNNLGSKGCRCISLLPQLQHLTISRNNVG 544

Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
                 L  LS L+ L+L    I D G   L +   LT++ +F
Sbjct: 545 SSGCLYLNALSKLEYLDLVGNDIRDAGCEILCN-GSLTNVRVF 586



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 131/303 (43%), Gaps = 28/303 (9%)

Query: 189 CSKVTDSGIAYLKGLQKLTLLNL------EGCPVTA----ACLDSLSALGSLFYLN-LNR 237
           C  +T S +  L GL  L +++       +GC   A     CL SL    SL  LN  N 
Sbjct: 253 CEYLTSSAVTSLTGLTSLEMVSSHRSIGSKGCKYLANGKLKCLTSLDV--SLESLNETNN 310

Query: 238 CQLSDDGCEKFSK--IGSLKVLNLGFNEITDECLVHLK--GLTNLESLNLDSCGIGDEGL 293
             +  +GC+  +   +  L  LNL  N I  +   +L   GL  L  LNL  C +  +  
Sbjct: 311 NGIKSNGCKYLANGNLNHLIQLNLSGNRIYSKGCQYLSNGGLLTLTHLNLSCCALDFDAC 370

Query: 294 VNLTG--LCNLKCLELSDTQVGSSGLRHL--SGLTNLESINLSFTGI--SDGSLRKLAGL 347
             L    L NL  L LS   +  SG++ +    + NL  ++L    +  SD +    A +
Sbjct: 371 QYLGNGNLKNLVQLNLSKNMLIGSGIQFIFNGNMPNLTWLSLESCEVRPSDCAFIGNADV 430

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLF--GARITDSGAAYL--RNFKNLRSLEI 403
           SSL  LN+    I+D G   L     L+  DL+    +I  SG A L       L  L +
Sbjct: 431 SSLVYLNISNNPISDEGCKNLAKAQFLSLQDLYLRDCQIGSSGFAELTANGIGKLTKLYV 490

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
               + D G  +I  L  L LL++S N NL  K    IS L  L  L +S + + S+G  
Sbjct: 491 DNNNIGDEGCLNISSLPFLNLLSVSNN-NLGSKGCRCISLLPQLQHLTISRNNVGSSGCL 549

Query: 464 HLN 466
           +LN
Sbjct: 550 YLN 552



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 99/198 (50%), Gaps = 22/198 (11%)

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-----LTNL----ESIN-LSFTGISDGSL 341
            + +LTGL +L+ +  S   +GS G ++L+      LT+L    ES+N  +  GI     
Sbjct: 260 AVTSLTGLTSLEMVS-SHRSIGSKGCKYLANGKLKCLTSLDVSLESLNETNNNGIKSNGC 318

Query: 342 RKLAG--LSSLKSLNLDARQITDTGLAALTS--LTGLTHLDLFGARITDSGAAYLRN--F 395
           + LA   L+ L  LNL   +I   G   L++  L  LTHL+L    +      YL N   
Sbjct: 319 KYLANGNLNHLIQLNLSGNRIYSKGCQYLSNGGLLTLTHLNLSCCALDFDACQYLGNGNL 378

Query: 396 KNLRSLEICGGGLTDAGVKHI--KDLSSLTLLNLSQNCNLTDKTLELI--SGLTGLVSLN 451
           KNL  L +    L  +G++ I   ++ +LT L+L ++C +       I  + ++ LV LN
Sbjct: 379 KNLVQLNLSKNMLIGSGIQFIFNGNMPNLTWLSL-ESCEVRPSDCAFIGNADVSSLVYLN 437

Query: 452 VSNSRITSAGLRHLNHAR 469
           +SN+ I+  G ++L  A+
Sbjct: 438 ISNNPISDEGCKNLAKAQ 455


>gi|383852952|ref|XP_003701989.1| PREDICTED: F-box/LRR-repeat protein 14-like [Megachile rotundata]
          Length = 479

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 140/274 (51%), Gaps = 50/274 (18%)

Query: 68  DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
           ++T++GL+ +  +   L+ LD   C Q+SD G+ HL G++                  +A
Sbjct: 240 NITNTGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNR-----------------EA 282

Query: 127 FAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
             G   L  L L+ C R+    L ++  GL  L+S+N+ +C CITDS +K L+ +++L+ 
Sbjct: 283 AGGNFALEHLSLQDCQRLSDEALRHISIGLTTLKSINLSFCVCITDSGVKHLAKMSSLRE 342

Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRCQL 240
           L + SC  ++D G+AYL +G  +++ L++  C      A +     L +L  L+L+ CQ+
Sbjct: 343 LNLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQI 402

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-G 298
           SD+G  K +K                        L +LE+LN+  C  + D+GL  +   
Sbjct: 403 SDEGICKIAKT-----------------------LHDLETLNIGQCSRLTDKGLYTIAES 439

Query: 299 LCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 331
           + +LKC++L   T++ ++GL  +  L  L ++NL
Sbjct: 440 MKHLKCIDLYGCTRISTNGLERIMKLPQLSTLNL 473



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 94/287 (32%), Positives = 143/287 (49%), Gaps = 40/287 (13%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           L G+ NL++L +S C  +TD+G+  A+ +    LT LNL  C   +       +LG +  
Sbjct: 171 LRGVPNLEALNLSGCYNITDAGLINAFCQEYSTLTELNLSLCKQVSDI-----SLGRIVQ 225

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDE 291
              N   L   GC   +  G   +L + +N            L  L+ L+L SC  + D 
Sbjct: 226 YLKNLEHLELGGCCNITNTG---LLCIAWN------------LKKLKRLDLRSCWQVSDL 270

Query: 292 GLVNLTGL--------CNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGS 340
           G+ +L G+          L+ L L D Q +    LRH+S GLT L+SINLSF   I+D  
Sbjct: 271 GIAHLAGVNREAAGGNFALEHLSLQDCQRLSDEALRHISIGLTTLKSINLSFCVCITDSG 330

Query: 341 LRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFK 396
           ++ LA +SSL+ LNL +   I+D G+A L    + ++ LD+ F  +I D    ++ +   
Sbjct: 331 VKHLAKMSSLRELNLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLF 390

Query: 397 NLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
           NL+SL +    ++D G+ K  K L  L  LN+ Q   LTDK L  I+
Sbjct: 391 NLKSLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIA 437



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 158/325 (48%), Gaps = 68/325 (20%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGL------EH----------------------LRGLSNL 108
           L+   NL++L+ + C  I+D GL      E+                      ++ L NL
Sbjct: 171 LRGVPNLEALNLSGCYNITDAGLINAFCQEYSTLTELNLSLCKQVSDISLGRIVQYLKNL 230

Query: 109 TSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL--------MKLE 158
             L       IT  G+   A  L  L +LDL  C ++   G+ +L G+          LE
Sbjct: 231 EHLELGGCCNITNTGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGGNFALE 290

Query: 159 SLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
            L+++ C  ++D  ++ +S GLT LKS+ +S C  +TDSG+ +L  +  L  LNL  C  
Sbjct: 291 HLSLQDCQRLSDEALRHISIGLTTLKSINLSFCVCITDSGVKHLAKMSSLRELNLRSC-- 348

Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KG 274
                D++S +G  +        L++ G    S+I SL V    F ++I D+ LVH+ +G
Sbjct: 349 -----DNISDIGMAY--------LAEGG----SRISSLDV---SFCDKIGDQALVHISQG 388

Query: 275 LTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL 331
           L NL+SL+L +C I DEG+  +   L +L+ L +   +++   GL  ++  + +L+ I+L
Sbjct: 389 LFNLKSLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDL 448

Query: 332 -SFTGISDGSLRKLAGLSSLKSLNL 355
              T IS   L ++  L  L +LNL
Sbjct: 449 YGCTRISTNGLERIMKLPQLSTLNL 473



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 171/352 (48%), Gaps = 58/352 (16%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNL--KGLMKLES 159
           RG+  +  LS RR             G+ NL  L+L  C  I   GL+N   +    L  
Sbjct: 153 RGVKRVQVLSLRRGLG------DVLRGVPNLEALNLSGCYNITDAGLINAFCQEYSTLTE 206

Query: 160 LNIKWCNCITDSDM-KPLSGLTNLKSLQIS-CSKVTDSG---IAYLKGLQKLTLLNLEGC 214
           LN+  C  ++D  + + +  L NL+ L++  C  +T++G   IA+   L+KL  L+L  C
Sbjct: 207 LNLSLCKQVSDISLGRIVQYLKNLEHLELGGCCNITNTGLLCIAW--NLKKLKRLDLRSC 264

Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFS-KIGSLKVLNLGFNE 263
              +       A ++  +A G  +L +L+L  CQ LSD+     S  + +LK +NL F  
Sbjct: 265 WQVSDLGIAHLAGVNREAAGGNFALEHLSLQDCQRLSDEALRHISIGLTTLKSINLSFCV 324

Query: 264 -ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
            ITD  + HL  +++L  LNL SC  I D G+  L                         
Sbjct: 325 CITDSGVKHLAKMSSLRELNLRSCDNISDIGMAYLA-----------------------E 361

Query: 322 GLTNLESINLSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLD 378
           G + + S+++SF   I D +L  ++ GL +LKSL+L A QI+D G+  +  +L  L  L+
Sbjct: 362 GGSRISSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQISDEGICKIAKTLHDLETLN 421

Query: 379 LFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
           +   +R+TD G   +  + K+L+ +++ G   ++  G++ I  L  L+ LNL
Sbjct: 422 IGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTLNL 473



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 102/214 (47%), Gaps = 42/214 (19%)

Query: 272 LKGLTNLESLNLDSC-GIGDEGLVN--------LTGLCNLKCLELSDTQVGSSGLRHLSG 322
           L+G+ NLE+LNL  C  I D GL+N        LT L    C ++SD  +G    R +  
Sbjct: 171 LRGVPNLEALNLSGCYNITDAGLINAFCQEYSTLTELNLSLCKQVSDISLG----RIVQY 226

Query: 323 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 372
           L NLE + L     I++  L  +A  L  LK L+L +  Q++D G+A L  +        
Sbjct: 227 LKNLEHLELGGCCNITNTGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGGN 286

Query: 373 -GLTHLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSSLTLL 425
             L HL L    R++D    ++      L+S+     +C   +TD+GVKH+  +SSL  L
Sbjct: 287 FALEHLSLQDCQRLSDEALRHISIGLTTLKSINLSFCVC---ITDSGVKHLAKMSSLREL 343

Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
           NL    N++D          G+  L    SRI+S
Sbjct: 344 NLRSCDNISD---------IGMAYLAEGGSRISS 368


>gi|290982306|ref|XP_002673871.1| LRR_RI domain-containing protein [Naegleria gruberi]
 gi|284087458|gb|EFC41127.1| LRR_RI domain-containing protein [Naegleria gruberi]
          Length = 529

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 123/446 (27%), Positives = 206/446 (46%), Gaps = 66/446 (14%)

Query: 57  SSLLSVDLSGSDVTDSG---LIHLKDC------SN------------------LQSLDFN 89
            +L+ +D+ GSD+ DSG   L  LK+       SN                  L +LD +
Sbjct: 103 PNLIHLDIYGSDIEDSGVACLCKLKELKILNIGSNKLTSKGRGIEMISKFMKCLTNLDIS 162

Query: 90  FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
           F   + + G++ L+ L  LT L+    + I A G++    +  L+KL+      I G  +
Sbjct: 163 FN-SLGNSGMKQLK-LDKLTDLNVSYCD-IDATGIQFIRNMTCLIKLN------ISGNNI 213

Query: 150 NLKG------LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
           N KG      L  L+ L+I    C+ +   K +S + NLK L IS +++ + G   +  L
Sbjct: 214 NCKGALLLSNLKNLQELDIASA-CLKEEGAKHISRMDNLKFLSISHNQILNGGAKAISSL 272

Query: 204 QKLTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
            KL +L++  C +    L  +S  L +L  +++       DG    + + +LKVL+    
Sbjct: 273 SKLEILHISNCDIGCEGLQYISKNLKNLTEIDIGGNHFGMDGVIVIASMNNLKVLS---- 328

Query: 263 EITDECL-----VHLKGLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
            I + CL      +L  + NL  L    N+D   IG+    ++  L NL  L  ++  + 
Sbjct: 329 -IAESCLGLLGVQYLSKMENLTYLNISDNIDDIFIGE----SINDLQNLTTLLYTNNSLS 383

Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKL-AGLSSLKSLNLDARQITDTGLAALT-SL 371
                 +S LT L ++N+  T ISD  +  L + L  L +L  D   IT  G+  ++ S+
Sbjct: 384 MDEAITISSLTQLTTLNIESTEISDVHIEILCSSLHHLINLYADTNFITSWGVKLISESM 443

Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
             L  L L G RI D G  Y+ + ++LR L +C   + D GV+ + + +   L  L  +C
Sbjct: 444 IDLESLYLSGNRIGDEGLTYICSLQHLRILGVCNCEIGDRGVQVLVNCAPKKLRELLIDC 503

Query: 432 --NLTDKTLELISGLTGLVSLNVSNS 455
             N+T K  +LI  +  L S+ + N+
Sbjct: 504 NENITSKGCKLIYSIPQLNSIYLENN 529



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 100/199 (50%), Gaps = 11/199 (5%)

Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL------RHLSGLTNL 326
           K + NL  L++    I D G+  L  L  LK L +   ++ S G       + +  LTNL
Sbjct: 100 KLMPNLIHLDIYGSDIEDSGVACLCKLKELKILNIGSNKLTSKGRGIEMISKFMKCLTNL 159

Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
           +   +SF  + +  +++L  L  L  LN+    I  TG+  + ++T L  L++ G  I  
Sbjct: 160 D---ISFNSLGNSGMKQLK-LDKLTDLNVSYCDIDATGIQFIRNMTCLIKLNISGNNINC 215

Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
            GA  L N KNL+ L+I    L + G KHI  + +L  L++S N  + +   + IS L+ 
Sbjct: 216 KGALLLSNLKNLQELDIASACLKEEGAKHISRMDNLKFLSISHN-QILNGGAKAISSLSK 274

Query: 447 LVSLNVSNSRITSAGLRHL 465
           L  L++SN  I   GL+++
Sbjct: 275 LEILHISNCDIGCEGLQYI 293



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 153/344 (44%), Gaps = 46/344 (13%)

Query: 16  YSRCLT--EVSLEAFRDCALQDLCLGQYPGVNDKWMDVIAS------QGSSLLSVDLSGS 67
           + +CLT  ++S  +  +  ++ L L +   +N  + D+ A+        + L+ +++SG+
Sbjct: 152 FMKCLTNLDISFNSLGNSGMKQLKLDKLTDLNVSYCDIDATGIQFIRNMTCLIKLNISGN 211

Query: 68  DVTDSGLIHLKDCSNLQSLDF-NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
           ++   G + L +  NLQ LD  + C++  + G +H+  + NL  LS   N  +   G KA
Sbjct: 212 NINCKGALLLSNLKNLQELDIASACLK--EEGAKHISRMDNLKFLSISHNQILNG-GAKA 268

Query: 127 FAGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
            + L  L  L +  C     GL  + K L  L  ++I   N      +  ++ + NLK L
Sbjct: 269 ISSLSKLEILHISNCDIGCEGLQYISKNLKNLTEIDIGG-NHFGMDGVIVIASMNNLKVL 327

Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGC---PVTAACLDSLSALGSLFYLNLNRCQLSD 242
            I+ S +   G+ YL  ++ LT LN+            ++ L  L +L Y N     LS 
Sbjct: 328 SIAESCLGLLGVQYLSKMENLTYLNISDNIDDIFIGESINDLQNLTTLLYTN---NSLSM 384

Query: 243 DGCEKFSKIGSLKVLNLGFNEITD-------ECLVHL-------------------KGLT 276
           D     S +  L  LN+   EI+D         L HL                   + + 
Sbjct: 385 DEAITISSLTQLTTLNIESTEISDVHIEILCSSLHHLINLYADTNFITSWGVKLISESMI 444

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
           +LESL L    IGDEGL  +  L +L+ L + + ++G  G++ L
Sbjct: 445 DLESLYLSGNRIGDEGLTYICSLQHLRILGVCNCEIGDRGVQVL 488



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 18/151 (11%)

Query: 319 HLSGLTNLESINLSFT-GISDG----SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
           H+ GLT       SF+  ISD     S+ KL  + +L  L++    I D+G+A L  L  
Sbjct: 77  HIHGLT------FSFSKAISDKTNLISIEKL--MPNLIHLDIYGSDIEDSGVACLCKLKE 128

Query: 374 LTHLDLFGARITDSG---AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           L  L++   ++T  G       +  K L +L+I    L ++G+K +K L  LT LN+S  
Sbjct: 129 LKILNIGSNKLTSKGRGIEMISKFMKCLTNLDISFNSLGNSGMKQLK-LDKLTDLNVSY- 186

Query: 431 CNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
           C++    ++ I  +T L+ LN+S + I   G
Sbjct: 187 CDIDATGIQFIRNMTCLIKLNISGNNINCKG 217


>gi|112959440|gb|ABI27247.1| truncated internalin A [Listeria monocytogenes]
 gi|112959442|gb|ABI27248.1| truncated internalin A [Listeria monocytogenes]
 gi|112959448|gb|ABI27251.1| truncated internalin A [Listeria monocytogenes]
 gi|112959454|gb|ABI27254.1| truncated internalin A [Listeria monocytogenes]
 gi|112959458|gb|ABI27256.1| truncated internalin A [Listeria monocytogenes]
 gi|112959460|gb|ABI27257.1| truncated internalin A [Listeria monocytogenes]
 gi|112959462|gb|ABI27258.1| truncated internalin A [Listeria monocytogenes]
 gi|112959472|gb|ABI27263.1| truncated internalin A [Listeria monocytogenes]
 gi|112959480|gb|ABI27267.1| truncated internalin A [Listeria monocytogenes]
 gi|112959482|gb|ABI27268.1| truncated internalin A [Listeria monocytogenes]
 gi|112959488|gb|ABI27271.1| truncated internalin A [Listeria monocytogenes]
 gi|112959514|gb|ABI27284.1| truncated internalin A [Listeria monocytogenes]
 gi|112959538|gb|ABI27296.1| truncated internalin A [Listeria monocytogenes]
 gi|112959542|gb|ABI27298.1| truncated internalin A [Listeria monocytogenes]
 gi|112959548|gb|ABI27301.1| truncated internalin A [Listeria monocytogenes]
          Length = 542

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 35  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KPL
Sbjct: 89  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 140

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 247

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 363

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 364 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 81/250 (32%), Positives = 122/250 (48%), Gaps = 24/250 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 27  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 83  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 135

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 246

Query: 460 ----AGLRHL 465
               AGL  L
Sbjct: 247 ISPLAGLTAL 256


>gi|298359896|gb|ADI77527.1| internalin A [Listeria monocytogenes]
          Length = 797

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 156/355 (43%), Gaps = 95/355 (26%)

Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN               
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
               NL  +  S +++TD  I  LK L KL              +D L          +N
Sbjct: 99  ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             Q++D      + + +L  L L  N+ITD  +  LK LTNL  L L S  I D  +  L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
           +GL NL+ L   + QV  + L+ L+ LT LE +++S   +SD S+  LA L++L+SL   
Sbjct: 183 SGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT 237

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
             QI+D     +T L  LT+LD                      L + G  L D G   +
Sbjct: 238 NNQISD-----ITPLGILTNLD---------------------ELSLNGNQLKDIGT--L 269

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS----AGLRHLNH 467
             L++LT L+L+ N       L  +SGLT L  L +  ++I++    AGL  L +
Sbjct: 270 ASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 321


>gi|290892407|ref|ZP_06555401.1| InlA protein [Listeria monocytogenes FSL J2-071]
 gi|290557973|gb|EFD91493.1| InlA protein [Listeria monocytogenes FSL J2-071]
          Length = 796

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 101 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 154

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 155 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 206

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 207 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 259

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 260 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 313

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 314 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 371

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 372 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 429

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 430 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 462



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 156/355 (43%), Gaps = 95/355 (26%)

Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN               
Sbjct: 57  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 101

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
               NL  +  S +++TD  I  LK L KL              +D L          +N
Sbjct: 102 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 131

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             Q++D      + + +L  L L  N+ITD  +  LK LTNL  L L S  I D  +  L
Sbjct: 132 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 185

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
           +GL NL+ L   + QV  + L+ L+ LT LE +++S   +SD S+  LA L++L+SL   
Sbjct: 186 SGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT 240

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
             QI+D     +T L  LT+LD                      L + G  L D G   +
Sbjct: 241 NNQISD-----ITPLGILTNLD---------------------ELSLNGNQLKDIGT--L 272

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS----AGLRHLNH 467
             L++LT L+L+ N       L  +SGLT L  L +  ++I++    AGL  L +
Sbjct: 273 ASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 324


>gi|157118403|ref|XP_001659098.1| F-Box protein, putative [Aedes aegypti]
 gi|108875753|gb|EAT39978.1| AAEL008262-PA, partial [Aedes aegypti]
          Length = 381

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 95/271 (35%), Positives = 142/271 (52%), Gaps = 43/271 (15%)

Query: 152 KGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKLT 207
           +G+ K++ L    C  ITD  +  +  + L NL++L +S C +VTDS +  + + L+ + 
Sbjct: 132 RGIKKVQILG---CYNITDISLGYVFSTDLLNLRTLDLSLCKQVTDSSLGRIAQHLKNVE 188

Query: 208 LLNLEGCP--VTAACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF 261
           +L L GC      A L   +A G  +L YL L  CQ LSD+     ++ + SLK +NL F
Sbjct: 189 ILELGGCSNITNTAGLSKETADGTPALEYLGLQDCQRLSDEALRHIAQGLTSLKSINLSF 248

Query: 262 -NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
              +TD  L HL  +T LE LNL +C  I D G+  LT                      
Sbjct: 249 CVSVTDSGLKHLAKMTKLEELNLRACDNISDIGMAYLT---------------------- 286

Query: 320 LSGLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTH 376
             G + + S+++SF   I+D +L  ++ GL  LKSL+L A QITD GLA +  SL  L  
Sbjct: 287 -EGGSAIISLDVSFCDKIADQALTHISQGLFHLKSLSLSACQITDEGLAKIAKSLHDLET 345

Query: 377 LDLFG-ARITDSGAAYLRN-FKNLRSLEICG 405
           L++   AR+TD G  YL +   NLR++++ G
Sbjct: 346 LNIGQCARVTDKGLEYLADELNNLRAIDLYG 376



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 123/235 (52%), Gaps = 29/235 (12%)

Query: 73  GLIHLKDCSNLQSLDFNFCIQISDGGL----EHLR--------GLSNLTSLSFRRNNAIT 120
           G +   D  NL++LD + C Q++D  L    +HL+        G SN+T+ +       T
Sbjct: 151 GYVFSTDLLNLRTLDLSLCKQVTDSSLGRIAQHLKNVEILELGGCSNITNTAGLSKE--T 208

Query: 121 AQGMKA--FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           A G  A  + GL +  +L  E    I  GL +LK      S+N+ +C  +TDS +K L+ 
Sbjct: 209 ADGTPALEYLGLQDCQRLSDEALRHIAQGLTSLK------SINLSFCVSVTDSGLKHLAK 262

Query: 179 LTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYLN 234
           +T L+ L + +C  ++D G+AYL +G   +  L++  C  +    L  +S  L  L  L+
Sbjct: 263 MTKLEELNLRACDNISDIGMAYLTEGGSAIISLDVSFCDKIADQALTHISQGLFHLKSLS 322

Query: 235 LNRCQLSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKG-LTNLESLNLDSC 286
           L+ CQ++D+G  K +K +  L+ LN+G    +TD+ L +L   L NL +++L  C
Sbjct: 323 LSACQITDEGLAKIAKSLHDLETLNIGQCARVTDKGLEYLADELNNLRAIDLYGC 377



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 109/203 (53%), Gaps = 14/203 (6%)

Query: 254 LKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCG--IGDEGLVNLT--GLCNLKCLEL 307
           L+ L+L    ++TD  L  + + L N+E L L  C       GL   T  G   L+ L L
Sbjct: 161 LRTLDLSLCKQVTDSSLGRIAQHLKNVEILELGGCSNITNTAGLSKETADGTPALEYLGL 220

Query: 308 SDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDT 363
            D Q +    LRH++ GLT+L+SINLSF   ++D  L+ LA ++ L+ LNL A   I+D 
Sbjct: 221 QDCQRLSDEALRHIAQGLTSLKSINLSFCVSVTDSGLKHLAKMTKLEELNLRACDNISDI 280

Query: 364 GLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDL 419
           G+A LT   + +  LD+ F  +I D    ++ +   +L+SL +    +TD G+  I K L
Sbjct: 281 GMAYLTEGGSAIISLDVSFCDKIADQALTHISQGLFHLKSLSLSACQITDEGLAKIAKSL 340

Query: 420 SSLTLLNLSQNCNLTDKTLELIS 442
             L  LN+ Q   +TDK LE ++
Sbjct: 341 HDLETLNIGQCARVTDKGLEYLA 363



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 85/152 (55%), Gaps = 6/152 (3%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           ++D  L H+ +  ++L+S++ +FC+ ++D GL+HL  ++ L  L+ R  + I+  GM   
Sbjct: 226 LSDEALRHIAQGLTSLKSINLSFCVSVTDSGLKHLAKMTKLEELNLRACDNISDIGMAYL 285

Query: 128 A-GLINLVKLDLERCTRI-HGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
             G   ++ LD+  C +I    L ++ +GL  L+SL++  C    +   K    L +L++
Sbjct: 286 TEGGSAIISLDVSFCDKIADQALTHISQGLFHLKSLSLSACQITDEGLAKIAKSLHDLET 345

Query: 185 LQI-SCSKVTDSGIAYLKG-LQKLTLLNLEGC 214
           L I  C++VTD G+ YL   L  L  ++L GC
Sbjct: 346 LNIGQCARVTDKGLEYLADELNNLRAIDLYGC 377



 Score = 42.4 bits (98), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 66/116 (56%), Gaps = 5/116 (4%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHL-KDCSNLQSLDFNF 90
           L++L L     ++D  M  +   GS+++S+D+S  D + D  L H+ +   +L+SL  + 
Sbjct: 266 LEELNLRACDNISDIGMAYLTEGGSAIISLDVSFCDKIADQALTHISQGLFHLKSLSLSA 325

Query: 91  CIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRI 144
           C QI+D GL  + + L +L +L+  +   +T +G++  A  L NL  +DL  CTR+
Sbjct: 326 C-QITDEGLAKIAKSLHDLETLNIGQCARVTDKGLEYLADELNNLRAIDLYGCTRL 380


>gi|168703296|ref|ZP_02735573.1| hypothetical protein GobsU_27441 [Gemmata obscuriglobus UQM 2246]
          Length = 635

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 116/248 (46%), Gaps = 24/248 (9%)

Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
           TD +++  + +  ++ ++I+   VT +G+ +L  L KL  L ++ CPV +  +  L+A  
Sbjct: 228 TDDELRVFTSIREVEHVRIANGDVTTAGLYHLPRLSKLKTLEIDSCPVDS--IAPLTACP 285

Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
           +L  L +     ++ G E+ +      V+N       D     L+ LTNL  L LD C I
Sbjct: 286 NLTELVIT----AEAGTERRA------VVN-------DTGTAGLEKLTNLRRLKLDWCEI 328

Query: 289 GDEGLVNLTGLCNLKCLEL---SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
           G + L  L  L  L+ LEL       +  + L  L+GL  LE + L    I   +L  + 
Sbjct: 329 GGQTLRRLAALHRLRSLELMLFWGQHISGTDLAELTGLLELEKLTLH--PIPPWALEYIG 386

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
            L +L++L L      D+    L  LT L  L L G  +TD    +LR  ++LR+L I  
Sbjct: 387 PLRTLRTLTLSLFGEGDSEFRHLAQLTNLCWLKLTGPAVTDCALGHLRTLRSLRTLHISE 446

Query: 406 GGLTDAGV 413
             +T  G 
Sbjct: 447 SAVTATGA 454



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 110/257 (42%), Gaps = 28/257 (10%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           V ++  DVT +GL HL   S L++L+ + C   S   +  L    NLT L       ITA
Sbjct: 244 VRIANGDVTTAGLYHLPRLSKLKTLEIDSCPVDS---IAPLTACPNLTEL------VITA 294

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
           +       ++N              G   L+ L  L  L + WC  I    ++ L+ L  
Sbjct: 295 EAGTERRAVVN------------DTGTAGLEKLTNLRRLKLDWCE-IGGQTLRRLAALHR 341

Query: 182 LKSLQISC---SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           L+SL++       ++ + +A L GL +L  L L   P+    L+ +  L +L  L L+  
Sbjct: 342 LRSLELMLFWGQHISGTDLAELTGLLELEKLTLH--PIPPWALEYIGPLRTLRTLTLSLF 399

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
              D      +++ +L  L L    +TD  L HL+ L +L +L++    +   G + L  
Sbjct: 400 GEGDSEFRHLAQLTNLCWLKLTGPAVTDCALGHLRTLRSLRTLHISESAVTATGALTLAH 459

Query: 299 LCNLKCLELSDTQVGSS 315
                 + +SDT V  S
Sbjct: 460 QLPAAKI-ISDTVVAWS 475


>gi|85679218|gb|ABC72025.1| InlA [Listeria monocytogenes]
 gi|85679232|gb|ABC72032.1| InlA [Listeria monocytogenes]
          Length = 794

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 97  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 202

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 255

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 256 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 309

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 310 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 367

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 368 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 425

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 426 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 156/355 (43%), Gaps = 95/355 (26%)

Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN               
Sbjct: 53  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 97

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
               NL  +  S +++TD  I  LK L KL              +D L          +N
Sbjct: 98  ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 127

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             Q++D      + + +L  L L  N+ITD  +  LK LTNL  L L S  I D  +  L
Sbjct: 128 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 181

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
           +GL NL+ L   + QV  + L+ L+ LT LE +++S   +SD S+  LA L++L+SL   
Sbjct: 182 SGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT 236

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
             QI+D     +T L  LT+LD                      L + G  L D G   +
Sbjct: 237 NNQISD-----ITPLGILTNLD---------------------ELSLNGNQLKDIGT--L 268

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS----AGLRHLNH 467
             L++LT L+L+ N       L  +SGLT L  L +  ++I++    AGL  L +
Sbjct: 269 ASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 320


>gi|22347544|gb|AAM95917.1| internalin A precursor [Listeria monocytogenes]
          Length = 741

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 42  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 95

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 96  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 147

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 312

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 313 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVKYKV 370

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 371 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  L+NL 
Sbjct: 34  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 89

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 90  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 142

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 253

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 254 ISPLAGLTALTN 265


>gi|112961640|gb|ABI28446.1| truncated internalin A [Listeria monocytogenes]
 gi|112961643|gb|ABI28448.1| truncated internalin A [Listeria monocytogenes]
 gi|112961661|gb|ABI28460.1| truncated internalin A [Listeria monocytogenes]
          Length = 556

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 49  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 154

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 377

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 378 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 41  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 96

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 97  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 149

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 150 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 205

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 206 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 260

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 261 ISPLAGLTALTN 272


>gi|404406915|ref|YP_006689630.1| internalin A [Listeria monocytogenes SLCC2376]
 gi|130774829|gb|ABO32427.1| InlA [Listeria monocytogenes]
 gi|167861972|gb|ACA05685.1| InlA [Listeria monocytogenes]
 gi|194326147|emb|CAQ77232.1| internalin A [Listeria monocytogenes]
 gi|404241064|emb|CBY62464.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2376]
          Length = 800

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 156/355 (43%), Gaps = 95/355 (26%)

Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN               
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
               NL  +  S +++TD  I  LK L KL              +D L          +N
Sbjct: 99  ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             Q++D      + + +L  L L  N+ITD  +  LK LTNL  L L S  I D  +  L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
           +GL NL+ L   + QV  + L+ L+ LT LE +++S   +SD S+  LA L++L+SL   
Sbjct: 183 SGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT 237

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
             QI+D     +T L  LT+LD                      L + G  L D G   +
Sbjct: 238 NNQISD-----ITPLGILTNLD---------------------ELSLNGNQLKDIGT--L 269

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS----AGLRHLNH 467
             L++LT L+L+ N       L  +SGLT L  L +  ++I++    AGL  L +
Sbjct: 270 ASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 321


>gi|219821300|gb|ACL37778.1| internalin A [Listeria monocytogenes]
 gi|219821378|gb|ACL37830.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 40  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 94  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 368

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  L+NL 
Sbjct: 32  SIDGLKYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 88  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 251

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 252 ISPLAGLTALTN 263


>gi|283781267|ref|YP_003372022.1| hypothetical protein Psta_3501 [Pirellula staleyi DSM 6068]
 gi|283439720|gb|ADB18162.1| hypothetical protein Psta_3501 [Pirellula staleyi DSM 6068]
          Length = 436

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 138/318 (43%), Gaps = 39/318 (12%)

Query: 94  ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR----IHGGLV 149
           +SD        LS+L  LS    N IT +G++       L    +   +R    ++G   
Sbjct: 102 VSDEVFARSVALSDLQFLSIYETN-ITNEGLQVLRKFSKLRSFSVAPVSRYEKSMYGAPQ 160

Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
                +K  S   K    IT   ++PL  +  ++SLQ+  +++  S +A L+   KL  +
Sbjct: 161 WSYPFLKQRSDRPK----ITVQGLEPLRNIATIESLQLIDAQLAPSDLAILQSWPKLGSI 216

Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
            L    +T+  +  L+A   +  L L   +++ D      +  SLK L L   +++ + L
Sbjct: 217 ALSTT-MTSEAVQHLAACKRVSNLTLGYREITADEIRALGEWESLKKLMLLHAKLSSDAL 275

Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
             L  L +LE L+L+ C + D+ L +L     L  L L   ++   GLRHL     L+ I
Sbjct: 276 AALASLESLEQLDLEECNLTDDDLAHLKLPAKLTILGLKRNEIDGPGLRHLVPF-QLKQI 334

Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDA----------------------------RQIT 361
            L F  IS+ +L +LA L +L++LNL                              +Q+T
Sbjct: 335 GLEFNNISNATLGELAQLRTLETLNLSYCRQIDNQGIESGVLQRMTHVRQLGLRGLKQVT 394

Query: 362 DTGLAALTSLTGLTHLDL 379
           D  LA +  +T L H+ +
Sbjct: 395 DASLAEIVKMTHLKHITI 412



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 127/296 (42%), Gaps = 34/296 (11%)

Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE---KFSKIGSLKVLNLGF 261
           +L  L L G  V+        AL  L +L++    ++++G +   KFSK+ S  V  +  
Sbjct: 91  QLAHLGLWGEGVSDEVFARSVALSDLQFLSIYETNITNEGLQVLRKFSKLRSFSVAPVSR 150

Query: 262 NE----------------------ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
            E                      IT + L  L+ +  +ESL L    +    L  L   
Sbjct: 151 YEKSMYGAPQWSYPFLKQRSDRPKITVQGLEPLRNIATIESLQLIDAQLAPSDLAILQSW 210

Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
             L  + LS T + S  ++HL+    + ++ L +  I+   +R L    SLK L L   +
Sbjct: 211 PKLGSIALSTT-MTSEAVQHLAACKRVSNLTLGYREITADEIRALGEWESLKKLMLLHAK 269

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
           ++   LAAL SL  L  LDL    +TD   A+L+    L  L +    +   G++H+   
Sbjct: 270 LSSDALAALASLESLEQLDLEECNLTDDDLAHLKLPAKLTILGLKRNEIDGPGLRHLVPF 329

Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS------NSRITSAGLRHLNHAR 469
             L  + L  N N+++ TL  ++ L  L +LN+S      N  I S  L+ + H R
Sbjct: 330 -QLKQIGLEFN-NISNATLGELAQLRTLETLNLSYCRQIDNQGIESGVLQRMTHVR 383


>gi|219821267|gb|ACL37756.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 40  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 94  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVKYKV 368

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  L+NL 
Sbjct: 32  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 88  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 251

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 252 ISPLAGLTALTN 263


>gi|313485061|gb|ADR53004.1| InlA [Listeria monocytogenes]
          Length = 724

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|290990770|ref|XP_002678009.1| predicted protein [Naegleria gruberi]
 gi|284091619|gb|EFC45265.1| predicted protein [Naegleria gruberi]
          Length = 329

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 117/235 (49%), Gaps = 10/235 (4%)

Query: 199 YLKGLQKLTLLNLEGC------PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
           ++K   K +++N++ C      P     +  +  L SL+   ++  Q+  +G +  S++ 
Sbjct: 96  FMKSQFKNSIVNVKFCYRLRNSPDKVKFISEMKQLTSLY---ISDNQIGVEGAKYISEMK 152

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
            L  L++ +N+I  E   ++  +  L SLN+   GIG EG   ++ +  L  L +   Q+
Sbjct: 153 QLTSLDITYNQIGVEGSKYISEMKQLTSLNIYYNGIGVEGTKYISEMKQLTSLNIGYNQI 212

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
           G  G +++S +  L S+++ + GI     + ++ +  L SLN+   QI   G   ++ + 
Sbjct: 213 GVEGAKYISEMKQLTSLDIYYNGIGVEGSKYISEMKQLTSLNIGYNQIGVEGSKFISEMK 272

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
            LT L++ G +I   GA ++   K L SL+I    +   G K I ++  LT L++
Sbjct: 273 QLT-LNITGNQIGVEGAKFISEMKQLTSLDITYNQIGVEGSKFISEMKQLTSLDI 326



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 98/195 (50%), Gaps = 2/195 (1%)

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           +  L SL +    IG EG   ++ +  L  L+++  Q+G  G +++S +  L S+N+ + 
Sbjct: 127 MKQLTSLYISDNQIGVEGAKYISEMKQLTSLDITYNQIGVEGSKYISEMKQLTSLNIYYN 186

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
           GI     + ++ +  L SLN+   QI   G   ++ +  LT LD++   I   G+ Y+  
Sbjct: 187 GIGVEGTKYISEMKQLTSLNIGYNQIGVEGAKYISEMKQLTSLDIYYNGIGVEGSKYISE 246

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
            K L SL I    +   G K I ++  LT LN++ N  +  +  + IS +  L SL+++ 
Sbjct: 247 MKQLTSLNIGYNQIGVEGSKFISEMKQLT-LNITGN-QIGVEGAKFISEMKQLTSLDITY 304

Query: 455 SRITSAGLRHLNHAR 469
           ++I   G + ++  +
Sbjct: 305 NQIGVEGSKFISEMK 319



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 118/255 (46%), Gaps = 27/255 (10%)

Query: 151 LKGLMKLESLNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
           +K   K   +N+K+C  + +S   +K +S +  L SL IS +++   G  Y+  +++LT 
Sbjct: 97  MKSQFKNSIVNVKFCYRLRNSPDKVKFISEMKQLTSLYISDNQIGVEGAKYISEMKQLTS 156

Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
           L++                           Q+  +G +  S++  L  LN+ +N I  E 
Sbjct: 157 LDI------------------------TYNQIGVEGSKYISEMKQLTSLNIYYNGIGVEG 192

Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
             ++  +  L SLN+    IG EG   ++ +  L  L++    +G  G +++S +  L S
Sbjct: 193 TKYISEMKQLTSLNIGYNQIGVEGAKYISEMKQLTSLDIYYNGIGVEGSKYISEMKQLTS 252

Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
           +N+ +  I     + ++ +  L +LN+   QI   G   ++ +  LT LD+   +I   G
Sbjct: 253 LNIGYNQIGVEGSKFISEMKQL-TLNITGNQIGVEGAKFISEMKQLTSLDITYNQIGVEG 311

Query: 389 AAYLRNFKNLRSLEI 403
           + ++   K L SL+I
Sbjct: 312 SKFISEMKQLTSLDI 326



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 1/133 (0%)

Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
           S   ++ ++ +  L SL +   QI   G   ++ +  LT LD+   +I   G+ Y+   K
Sbjct: 117 SPDKVKFISEMKQLTSLYISDNQIGVEGAKYISEMKQLTSLDITYNQIGVEGSKYISEMK 176

Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
            L SL I   G+   G K+I ++  LT LN+  N  +  +  + IS +  L SL++  + 
Sbjct: 177 QLTSLNIYYNGIGVEGTKYISEMKQLTSLNIGYN-QIGVEGAKYISEMKQLTSLDIYYNG 235

Query: 457 ITSAGLRHLNHAR 469
           I   G ++++  +
Sbjct: 236 IGVEGSKYISEMK 248


>gi|219821312|gb|ACL37786.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 116/367 (31%), Positives = 182/367 (49%), Gaps = 38/367 (10%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 40  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 94  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD  +  ++ L+ L+ L
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 308

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
                +++D  +++L SLT +  L     +I+D     L N   +  L +     T+A V
Sbjct: 309 FFYNNKVSD--VSSLASLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPV 364

Query: 414 KHIKDLS 420
            +  ++S
Sbjct: 365 NYKANVS 371



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  L+NL 
Sbjct: 32  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLTNL+   LSF G   
Sbjct: 88  GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 139

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 140 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 195

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 196 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 251 NISPLAGLTALTN 263


>gi|313485065|gb|ADR53005.1| InlA [Listeria monocytogenes]
          Length = 801

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|219821288|gb|ACL37770.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 42  LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 95

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 96  IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 147

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 148 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 200

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 201 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 254

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 255 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 312

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 313 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVKYKVNV 370

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 371 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 34  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 86

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 87  TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 141

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 142 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 199

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 254

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 255 LAGLTALTN 263


>gi|298359724|gb|ADI77441.1| truncated internalin A [Listeria monocytogenes]
 gi|298359728|gb|ADI77443.1| truncated internalin A [Listeria monocytogenes]
 gi|298359760|gb|ADI77459.1| truncated internalin A [Listeria monocytogenes]
 gi|298359768|gb|ADI77463.1| truncated internalin A [Listeria monocytogenes]
 gi|298359778|gb|ADI77468.1| truncated internalin A [Listeria monocytogenes]
 gi|298359784|gb|ADI77471.1| truncated internalin A [Listeria monocytogenes]
 gi|298359796|gb|ADI77477.1| truncated internalin A [Listeria monocytogenes]
 gi|298359800|gb|ADI77479.1| truncated internalin A [Listeria monocytogenes]
 gi|298359816|gb|ADI77487.1| truncated internalin A [Listeria monocytogenes]
 gi|298359840|gb|ADI77499.1| truncated internalin A [Listeria monocytogenes]
 gi|298359850|gb|ADI77504.1| truncated internalin A [Listeria monocytogenes]
 gi|298359852|gb|ADI77505.1| truncated internalin A [Listeria monocytogenes]
 gi|298359860|gb|ADI77509.1| truncated internalin A [Listeria monocytogenes]
 gi|298359916|gb|ADI77537.1| truncated internalin A [Listeria monocytogenes]
 gi|298359928|gb|ADI77543.1| truncated internalin A [Listeria monocytogenes]
 gi|298359936|gb|ADI77547.1| truncated internalin A [Listeria monocytogenes]
 gi|298359962|gb|ADI77560.1| truncated internalin A [Listeria monocytogenes]
 gi|298359996|gb|ADI77577.1| truncated internalin A [Listeria monocytogenes]
 gi|298360016|gb|ADI77587.1| truncated internalin A [Listeria monocytogenes]
 gi|298360018|gb|ADI77588.1| truncated internalin A [Listeria monocytogenes]
 gi|298360022|gb|ADI77590.1| truncated internalin A [Listeria monocytogenes]
 gi|298360024|gb|ADI77591.1| truncated internalin A [Listeria monocytogenes]
 gi|298360046|gb|ADI77602.1| truncated internalin A [Listeria monocytogenes]
 gi|298360048|gb|ADI77603.1| truncated internalin A [Listeria monocytogenes]
 gi|298360058|gb|ADI77608.1| truncated internalin A [Listeria monocytogenes]
 gi|298360062|gb|ADI77610.1| truncated internalin A [Listeria monocytogenes]
 gi|298360088|gb|ADI77623.1| truncated internalin A [Listeria monocytogenes]
 gi|298360120|gb|ADI77639.1| truncated internalin A [Listeria monocytogenes]
 gi|298360152|gb|ADI77655.1| truncated internalin A [Listeria monocytogenes]
 gi|298360168|gb|ADI77663.1| truncated internalin A [Listeria monocytogenes]
 gi|298360204|gb|ADI77681.1| truncated internalin A [Listeria monocytogenes]
 gi|298360210|gb|ADI77684.1| truncated internalin A [Listeria monocytogenes]
 gi|298360224|gb|ADI77691.1| truncated internalin A [Listeria monocytogenes]
 gi|298360248|gb|ADI77703.1| truncated internalin A [Listeria monocytogenes]
 gi|298360250|gb|ADI77704.1| truncated internalin A [Listeria monocytogenes]
 gi|298360272|gb|ADI77715.1| truncated internalin A [Listeria monocytogenes]
 gi|298360308|gb|ADI77733.1| truncated internalin A [Listeria monocytogenes]
 gi|298360340|gb|ADI77749.1| truncated internalin A [Listeria monocytogenes]
 gi|298360382|gb|ADI77770.1| truncated internalin A [Listeria monocytogenes]
 gi|298360392|gb|ADI77775.1| truncated internalin A [Listeria monocytogenes]
 gi|298360408|gb|ADI77783.1| truncated internalin A [Listeria monocytogenes]
 gi|298360418|gb|ADI77788.1| truncated internalin A [Listeria monocytogenes]
 gi|298360430|gb|ADI77794.1| truncated internalin A [Listeria monocytogenes]
 gi|298360438|gb|ADI77798.1| truncated internalin A [Listeria monocytogenes]
 gi|298360444|gb|ADI77801.1| truncated internalin A [Listeria monocytogenes]
 gi|298360446|gb|ADI77802.1| truncated internalin A [Listeria monocytogenes]
 gi|298360476|gb|ADI77817.1| truncated internalin A [Listeria monocytogenes]
 gi|298360482|gb|ADI77820.1| truncated internalin A [Listeria monocytogenes]
 gi|298360484|gb|ADI77821.1| truncated internalin A [Listeria monocytogenes]
 gi|298360486|gb|ADI77822.1| truncated internalin A [Listeria monocytogenes]
 gi|298360490|gb|ADI77824.1| truncated internalin A [Listeria monocytogenes]
 gi|298360512|gb|ADI77835.1| truncated internalin A [Listeria monocytogenes]
 gi|298360526|gb|ADI77842.1| truncated internalin A [Listeria monocytogenes]
 gi|298360534|gb|ADI77846.1| truncated internalin A [Listeria monocytogenes]
 gi|298360574|gb|ADI77866.1| truncated internalin A [Listeria monocytogenes]
 gi|298360584|gb|ADI77871.1| truncated internalin A [Listeria monocytogenes]
 gi|298360618|gb|ADI77888.1| truncated internalin A [Listeria monocytogenes]
 gi|298360622|gb|ADI77890.1| truncated internalin A [Listeria monocytogenes]
 gi|298360626|gb|ADI77892.1| truncated internalin A [Listeria monocytogenes]
 gi|298360628|gb|ADI77893.1| truncated internalin A [Listeria monocytogenes]
 gi|298360646|gb|ADI77902.1| truncated internalin A [Listeria monocytogenes]
 gi|298360650|gb|ADI77904.1| truncated internalin A [Listeria monocytogenes]
 gi|298360664|gb|ADI77911.1| truncated internalin A [Listeria monocytogenes]
 gi|298360686|gb|ADI77922.1| truncated internalin A [Listeria monocytogenes]
 gi|298360702|gb|ADI77930.1| truncated internalin A [Listeria monocytogenes]
 gi|298360718|gb|ADI77938.1| truncated internalin A [Listeria monocytogenes]
 gi|443428870|gb|AGC92234.1| truncated internalin A [Listeria monocytogenes]
          Length = 605

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|290984930|ref|XP_002675179.1| predicted protein [Naegleria gruberi]
 gi|284088774|gb|EFC42435.1| predicted protein [Naegleria gruberi]
          Length = 330

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 134/289 (46%), Gaps = 5/289 (1%)

Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
           +D + +    + +L  L I  + +   G   +  + +LT L + G  +      S+S L 
Sbjct: 43  SDGNFQVFEMMKHLTHLDIRNNGIGYEGAQSIGKVMQLTRLCIAGNNIGEKGAKSISQLT 102

Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
            L  L+++  QL D G +  S++  L  LN+  N ITD+  + L  L  L  LN+ S  I
Sbjct: 103 QLTTLDVSFNQLCDYGTKFISQLSRLTDLNIRGNRITDKGAIFLSDLKELRFLNISSNTI 162

Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS----LRKL 344
             EG+ +LT L  L  L++S   +  S  + +S +  L ++NLS+     GS    +R +
Sbjct: 163 LLEGIKSLTNLKQLTQLDISYNNILPSYAQTISEMDQLTNLNLSYNDYGWGSDSNGVRYI 222

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
             + +LK+L      I       +  +  L  L++  + I  S A  + +   L  L+I 
Sbjct: 223 CEMKNLKTLTFGGICIRQYIFNYIKEMKQLACLNIRSSYIGSSSAKLISSMNQLTELDIS 282

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
              + D G KHI ++  LT LN+ + C +  +  E +  +  L  LN+S
Sbjct: 283 YNEIGDVGAKHISEMDQLTSLNV-EGCRINSEGTEYLKQMKQLTYLNIS 330



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 142/314 (45%), Gaps = 32/314 (10%)

Query: 95  SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
           SDG  +    + +LT L  R NN I  +G ++   ++ L +L    C  I G  +  KG 
Sbjct: 43  SDGNFQVFEMMKHLTHLDIR-NNGIGYEGAQSIGKVMQLTRL----C--IAGNNIGEKG- 94

Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
                              K +S LT L +L +S +++ D G  ++  L +LT LN+ G 
Sbjct: 95  ------------------AKSISQLTQLTTLDVSFNQLCDYGTKFISQLSRLTDLNIRGN 136

Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD---ECLVH 271
            +T      LS L  L +LN++   +  +G +  + +  L  L++ +N I     + +  
Sbjct: 137 RITDKGAIFLSDLKELRFLNISSNTILLEGIKSLTNLKQLTQLDISYNNILPSYAQTISE 196

Query: 272 LKGLTNLESLNLDSCGIGDE--GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
           +  LTNL +L+ +  G G +  G+  +  + NLK L      +      ++  +  L  +
Sbjct: 197 MDQLTNL-NLSYNDYGWGSDSNGVRYICEMKNLKTLTFGGICIRQYIFNYIKEMKQLACL 255

Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
           N+  + I   S + ++ ++ L  L++   +I D G   ++ +  LT L++ G RI   G 
Sbjct: 256 NIRSSYIGSSSAKLISSMNQLTELDISYNEIGDVGAKHISEMDQLTSLNVEGCRINSEGT 315

Query: 390 AYLRNFKNLRSLEI 403
            YL+  K L  L I
Sbjct: 316 EYLKQMKQLTYLNI 329



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 127/290 (43%), Gaps = 22/290 (7%)

Query: 179 LTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
           L N+   ++S  +  +D      + ++ LT L++    +      S+  +  L  L +  
Sbjct: 28  LQNIVKFRVSIDRDESDGNFQVFEMMKHLTHLDIRNNGIGYEGAQSIGKVMQLTRLCIAG 87

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
             + + G +  S++  L  L++ FN++ D     +  L+ L  LN+    I D+G + L+
Sbjct: 88  NNIGEKGAKSISQLTQLTTLDVSFNQLCDYGTKFISQLSRLTDLNIRGNRITDKGAIFLS 147

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
            L  L+ L +S   +   G++ L+ L  L  +++S+  I     + ++ +  L +LNL  
Sbjct: 148 DLKELRFLNISSNTILLEGIKSLTNLKQLTQLDISYNNILPSYAQTISEMDQLTNLNLSY 207

Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
                                 +G     +G  Y+   KNL++L   G  +      +IK
Sbjct: 208 ND--------------------YGWGSDSNGVRYICEMKNLKTLTFGGICIRQYIFNYIK 247

Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNH 467
           ++  L  LN+ ++  +   + +LIS +  L  L++S + I   G +H++ 
Sbjct: 248 EMKQLACLNI-RSSYIGSSSAKLISSMNQLTELDISYNEIGDVGAKHISE 296



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 94/209 (44%), Gaps = 29/209 (13%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           SQ S L  +++ G+ +TD G I L D   L+ L+ +    + +G ++ L  L  LT L  
Sbjct: 123 SQLSRLTDLNIRGNRITDKGAIFLSDLKELRFLNISSNTILLEG-IKSLTNLKQLTQLDI 181

Query: 114 RRNNAIT--AQGMKAFAGLINL---------------VKLDLERC---TRIHGGLV---- 149
             NN +   AQ +     L NL               V+   E     T   GG+     
Sbjct: 182 SYNNILPSYAQTISEMDQLTNLNLSYNDYGWGSDSNGVRYICEMKNLKTLTFGGICIRQY 241

Query: 150 ---NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
               +K + +L  LNI+  + I  S  K +S +  L  L IS +++ D G  ++  + +L
Sbjct: 242 IFNYIKEMKQLACLNIR-SSYIGSSSAKLISSMNQLTELDISYNEIGDVGAKHISEMDQL 300

Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           T LN+EGC + +   + L  +  L YLN+
Sbjct: 301 TSLNVEGCRINSEGTEYLKQMKQLTYLNI 329



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 1/133 (0%)

Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
           SDG+ +    +  L  L++    I   G  ++  +  LT L + G  I + GA  +    
Sbjct: 43  SDGNFQVFEMMKHLTHLDIRNNGIGYEGAQSIGKVMQLTRLCIAGNNIGEKGAKSISQLT 102

Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
            L +L++    L D G K I  LS LT LN+  N  +TDK    +S L  L  LN+S++ 
Sbjct: 103 QLTTLDVSFNQLCDYGTKFISQLSRLTDLNIRGN-RITDKGAIFLSDLKELRFLNISSNT 161

Query: 457 ITSAGLRHLNHAR 469
           I   G++ L + +
Sbjct: 162 ILLEGIKSLTNLK 174


>gi|85679220|gb|ABC72026.1| InlA [Listeria monocytogenes]
          Length = 794

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 99  LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 152

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 153 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 204

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 205 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 257

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 258 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 311

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 312 LAGLAALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 369

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 370 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKTNV 427

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 428 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 458



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 91  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 143

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 144 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 198

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 199 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 256

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 257 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 311

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 312 LAGLAALTN 320


>gi|85679228|gb|ABC72030.1| InlA [Listeria monocytogenes]
          Length = 794

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 97  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 202

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 255

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 256 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 309

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 310 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 367

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 368 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 425

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 426 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 156/355 (43%), Gaps = 95/355 (26%)

Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN               
Sbjct: 53  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 97

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
               NL  +  S +++TD  I  LK L KL              +D L          +N
Sbjct: 98  ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 127

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             Q++D      + + +L  L L  N+ITD  +  LK LTNL  L L S  I D  +  L
Sbjct: 128 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 181

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
           +GL NL+ L   + QV  + L+ L+ LT LE +++S   +SD S+  LA L++L+SL   
Sbjct: 182 SGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT 236

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
             QI+D     +T L  LT+LD                      L + G  L D G   +
Sbjct: 237 NNQISD-----ITPLGILTNLD---------------------ELSLNGNQLKDIGT--L 268

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS----AGLRHLNH 467
             L++LT L+L+ N       L  +SGLT L  L +  ++I++    AGL  L +
Sbjct: 269 ASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 320


>gi|219821309|gb|ACL37784.1| internalin A [Listeria monocytogenes]
 gi|219821393|gb|ACL37840.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 40  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 94  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 368

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  L+NL 
Sbjct: 32  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 88  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 251

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 252 ISPLAGLTALTN 263


>gi|223006802|gb|ACM69358.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|219821264|gb|ACL37754.1| internalin A [Listeria monocytogenes]
 gi|219821306|gb|ACL37782.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 40  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 94  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 368

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  L+NL 
Sbjct: 32  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 88  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 251

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 252 ISPLAGLTALTN 263


>gi|219821363|gb|ACL37820.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 40  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 94  NQIT--DINPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 368

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 34  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 86

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 87  TGLTLFNNQI--TDINPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 141

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 142 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 199

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 254

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 255 LAGLTALTN 263


>gi|322952096|gb|ADX21047.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|112959522|gb|ABI27288.1| truncated internalin A [Listeria monocytogenes]
          Length = 538

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 31  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 84

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KPL
Sbjct: 85  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 136

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 137 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 189

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 190 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 243

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 244 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 301

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 302 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 359

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 360 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 392



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 23  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 78

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 79  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 131

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 132 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 187

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 188 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 242

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 243 ISPLAGLTALTN 254


>gi|22347552|gb|AAM95921.1| internalin A precursor [Listeria monocytogenes]
          Length = 744

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 44  LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 97

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 98  IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 149

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 150 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 202

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 203 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 256

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 257 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 314

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 315 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNV 372

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 373 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 403



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 36  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 88

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 89  TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 143

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 144 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 201

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 202 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 256

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 257 LAGLTALTN 265


>gi|217965469|ref|YP_002351147.1| internalin-A [Listeria monocytogenes HCC23]
 gi|386007166|ref|YP_005925444.1| internalin A [Listeria monocytogenes L99]
 gi|386025755|ref|YP_005946531.1| internalin A [Listeria monocytogenes M7]
 gi|167861970|gb|ACA05684.1| InlA [Listeria monocytogenes]
 gi|167861982|gb|ACA05690.1| InlA [Listeria monocytogenes]
 gi|217334739|gb|ACK40533.1| internalin-A [Listeria monocytogenes HCC23]
 gi|307569976|emb|CAR83155.1| internalin A [Listeria monocytogenes L99]
 gi|336022336|gb|AEH91473.1| internalin A [Listeria monocytogenes M7]
          Length = 800

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 116/365 (31%), Positives = 180/365 (49%), Gaps = 38/365 (10%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD  +  ++ L+ L+ L  
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFF 368

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
              +++D  +++L SLT +  L     +I+D     L N   +  L +     T+A V +
Sbjct: 369 YNNKVSD--VSSLASLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNY 424

Query: 416 IKDLS 420
             ++S
Sbjct: 425 KANVS 429



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 156/355 (43%), Gaps = 95/355 (26%)

Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN               
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
               NL  +  S +++TD  I  LK L KL              +D L          +N
Sbjct: 99  ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             Q++D      + + +L  L L  N+ITD  +  LK LTNL  L L S  I D  +  L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
           +GL NL+ L   + QV  + L+ L+ LT LE +++S   +SD S+  LA L++L+SL   
Sbjct: 183 SGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT 237

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
             QI+D     +T L  LT+LD                      L + G  L D G   +
Sbjct: 238 NNQISD-----ITPLGILTNLD---------------------ELSLNGNQLKDIGT--L 269

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS----AGLRHLNH 467
             L++LT L+L+ N       L  +SGLT L  L +  ++I++    AGL  L +
Sbjct: 270 ASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 321


>gi|167862040|gb|ACA05719.1| InlA [Listeria monocytogenes]
 gi|194326153|emb|CAQ77235.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 156/355 (43%), Gaps = 95/355 (26%)

Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN               
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
               NL  +  S +++TD  I  LK L KL              +D L          +N
Sbjct: 99  ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             Q++D      + + +L  L L  N+ITD  +  LK LTNL  L L S  I D  +  L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
           +GL NL+ L   + QV  + L+ L+ LT LE +++S   +SD S+  LA L++L+SL   
Sbjct: 183 SGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT 237

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
             QI+D     +T L  LT+LD                      L + G  L D G   +
Sbjct: 238 NNQISD-----ITPLGILTNLD---------------------ELSLNGNQLKDIGT--L 269

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS----AGLRHLNH 467
             L++LT L+L+ N       L  +SGLT L  L +  ++I++    AGL  L +
Sbjct: 270 ASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 321


>gi|130774813|gb|ABO32419.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 167/385 (43%), Gaps = 95/385 (24%)

Query: 91  CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
            I  S+G       ++  T ++    +A  A+ MK   G  N+     + DL++ T +  
Sbjct: 24  WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83

Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
             + +K +  LE LN                   NL  +  S +++TD  I  LK L KL
Sbjct: 84  DRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD--ITPLKDLTKL 122

Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
                         +D L          +N  Q++D      + + +L  L L  N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLSNLTGLTLFNNQITD 156

Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
             +  LK LTNL  L L S  I D  +  L+GL NL+ L   + QV  + L+ L+ LT L
Sbjct: 157 --IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPLANLTTL 209

Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
           E +++S   +SD S+  LA L++L+SL     QI+D     +T L  LT+LD        
Sbjct: 210 ERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-------- 254

Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
                         L + G  L D G   +  L++LT L+L+ N       L  +SGLT 
Sbjct: 255 -------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTK 296

Query: 447 LVSLNVSNSRITS----AGLRHLNH 467
           L  L +  ++I++    AGL  L +
Sbjct: 297 LTELKLGANQISNISPLAGLTALTN 321


>gi|340052071|emb|CBY84387.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|112959444|gb|ABI27249.1| truncated internalin A [Listeria monocytogenes]
 gi|112959490|gb|ABI27272.1| truncated internalin A [Listeria monocytogenes]
          Length = 542

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 35  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KPL
Sbjct: 89  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 140

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTGLKLGANQISN--I 247

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 363

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 364 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 27  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 83  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 135

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTGLKLGANQISN 246

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 247 ISPLAGLTALTN 258


>gi|72385483|ref|XP_846409.1| leucine-rich repeat protein (LRRP) [Trypanosoma brucei TREU927]
 gi|9366582|emb|CAB95344.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
            brucei strain 927/4 GUTat10.1]
          Length = 1449

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 126/450 (28%), Positives = 194/450 (43%), Gaps = 91/450 (20%)

Query: 64   LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
            LS + + D  + ++ +C +L +L+  FC  I+D                           
Sbjct: 855  LSNTRINDENVRYVSECKSLNTLNLAFCKDITD--------------------------- 887

Query: 124  MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
            + A + +  L +L+L+ C  I  G+  L  L K   L++K C  + DSD +  S L N K
Sbjct: 888  VTALSKITMLEELNLDCCHNIRKGIETLGKLPKARILSMKECY-MGDSDAQQCSILGNSK 946

Query: 184  SL-----QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
            SL     + S   ++   ++ +  L++L L +         C+ S S L  L  LNL   
Sbjct: 947  SLVKLNLERSMGFISVKALSNIATLEELVLDHAR----EVCCIPSFSCLPRLRVLNLKYT 1002

Query: 239  QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GI--GDEGL-- 293
             ++ D  +  S+  SL++LNL   +   +  V L  L+ LE LN+ SC GI  G E L  
Sbjct: 1003 DINGDVTKNISESKSLRLLNLSHCKWVTDISV-LSSLSTLEELNVSSCYGIKKGWESLGK 1061

Query: 294  -----------VNLTG-----------LCNLK---CLELSDTQV---------------- 312
                        N+T            L  L+   C ELSD  V                
Sbjct: 1062 LPLLRVAILSDTNITAKDIACLSSCKTLVKLQFSWCEELSDVTVVYEIQSLEELIVKKYS 1121

Query: 313  -GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTS 370
             G  GL  L  L  L  ++L     SD S+  +    SL  LN++ R ++TD  +  L++
Sbjct: 1122 DGLKGLNALGTLPRLRFLHLRNVRGSDISVESIGTSKSLVRLNIEMRGELTD--ITPLSN 1179

Query: 371  LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
            +T L  L L+  R T  GA  L     LRSL++    ++D+ + +I     +T LNL+ +
Sbjct: 1180 ITSLEELSLWECRDTLEGAWTLERLPRLRSLDLGLSDISDSTLYYICLSRFITSLNLTSS 1239

Query: 431  CNLTDKTLELISGLTGLVSLNVSN-SRITS 459
              LTD  +  IS LT L  LN+    RITS
Sbjct: 1240 WKLTD--ISGISKLTALEELNLRGCHRITS 1267



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 161/393 (40%), Gaps = 81/393 (20%)

Query: 133 LVKLDLERCTRIHGGLVNLKGL---MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
           L++L LE  T    GL++++ L   + LE L++  C  I D+ +  L  L  LK L +S 
Sbjct: 518 LLQLTLESIT----GLIDVEALANILTLEKLSLHGCTGI-DAGIGCLGNLPQLKMLDLSG 572

Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
           +   +  +  L   Q +  LNL  C      +  +S+L +L  LNLN C   + G E   
Sbjct: 573 TNTDNESLRSLCLSQTMVSLNLSHC-WKMTNVSHISSLEALNELNLNNCFGINAGWEAIE 631

Query: 250 KIGSLKVLNLGFNEITDECLVH-----------------------LKGLTNLESLNLDSC 286
           K+  L V  L    ITD  + H                       L  +T LE LNLDSC
Sbjct: 632 KLQQLHVAILSNTHITDRDISHFSKCKNLVTLDLSFCNKLLDVTTLSNITTLEELNLDSC 691

Query: 287 GIGDEGLV---NLTGLC--NLKCLELSDTQVGSSG---------LRH---------LSGL 323
               +GL     L  LC  N+K +EL D+ +GS G         L H         LS L
Sbjct: 692 SNIRKGLSVLGELPRLCVLNIKGVELEDSVIGSLGNGNSFVRLSLEHCKGFGDVTPLSNL 751

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD--------------------- 362
             LE +NL +       +  L  L  L+ L+L   Q+ +                     
Sbjct: 752 VTLEELNLHYCDKVTSGMGTLGRLLQLRVLDLGRTQVDNNSLENICTSSIPLVLLNLSHC 811

Query: 363 ---TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
              T ++A+ SLT L  L++       SG         LR   +    + D  V+++ + 
Sbjct: 812 KKITSISAIASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRINDENVRYVSEC 871

Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
            SL  LNL+   ++TD T   +S +T L  LN+
Sbjct: 872 KSLNTLNLAFCKDITDVT--ALSKITMLEELNL 902



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 117/438 (26%), Positives = 191/438 (43%), Gaps = 40/438 (9%)

Query: 20   LTEVSLEAFRD--CALQDLCLGQYPGVNDKWMDVIA------SQGSSLLSVDLSGSD-VT 70
            L E+ L+  R+  C     CL +   +N K+ D+        S+  SL  ++LS    VT
Sbjct: 971  LEELVLDHAREVCCIPSFSCLPRLRVLNLKYTDINGDVTKNISESKSLRLLNLSHCKWVT 1030

Query: 71   DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
            D  +  L   S L+ L+ + C  I  G  E L  L  L  ++   +  ITA+ +   +  
Sbjct: 1031 DISV--LSSLSTLEELNVSSCYGIKKG-WESLGKLP-LLRVAILSDTNITAKDIACLSSC 1086

Query: 131  INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD----MKPLSGLTNLKSLQ 186
              LVKL    C  +    V +  +  LE L +K       SD    +  L  L  L+ L 
Sbjct: 1087 KTLVKLQFSWCEELSDVTV-VYEIQSLEELIVK-----KYSDGLKGLNALGTLPRLRFLH 1140

Query: 187  ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD--SLSALGSLFYLNLNRCQLSDDG 244
            +   + +D  +  +   + L  LN+E   +     D   LS + SL  L+L  C+ + +G
Sbjct: 1141 LRNVRGSDISVESIGTSKSLVRLNIE---MRGELTDITPLSNITSLEELSLWECRDTLEG 1197

Query: 245  CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
                 ++  L+ L+LG ++I+D  L ++     + SLNL S       L +++G+  L  
Sbjct: 1198 AWTLERLPRLRSLDLGLSDISDSTLYYICLSRFITSLNLTSSW----KLTDISGISKLTA 1253

Query: 305  LE---LSDTQVGSSGLRHLSGLTNLESINLSFTGIS--DGSLRKLAGLSSLKSLNLDARQ 359
            LE   L      +SG   LS L  L  +NL  T ++  DG    ++   SL +LN+    
Sbjct: 1254 LEELNLRGCHRITSGWEALSELPRLRVLNLESTSVTTRDGGYY-ISRCKSLVTLNIQLSD 1312

Query: 360  ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
            +TD   + L ++  L  L +        G + L     LR L + G  +TD  ++ I+  
Sbjct: 1313 MTDA--SCLANIKTLEELHIGECDELTQGFSALFTLPRLRILNLMGSLITDEDLREIQPP 1370

Query: 420  SSLTLLNLSQNCNLTDKT 437
             ++  LNLS   NL D T
Sbjct: 1371 HTIEELNLSYCKNLNDIT 1388



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 154/335 (45%), Gaps = 39/335 (11%)

Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEG 213
           +KL  L++  CN ITD+   P+S L  L+ L + SC  +T  GI  L  L +L +L+L G
Sbjct: 303 VKLSKLSVSECNNITDA--TPISQLAALEELNVNSCYHIT-KGIGTLGMLLRLRMLDLSG 359

Query: 214 CPVTAACLDSLSALGSLFYLNLNRC-QLSD---------------DGCEKFSK------- 250
            PV   CL  L   GSL  LNL+ C QL+D               +GC + ++       
Sbjct: 360 VPVEDNCLKDLCDCGSLERLNLSYCIQLTDINPLSSATAIEELNLNGCRRITRGIGVVWA 419

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD 309
           +  L+VL++   ++ D  +  L    +   L+L++C G GD  L  L+ +  L+ L +  
Sbjct: 420 LPKLRVLHMKDVQLEDSVIGSLGNGNSFVRLSLENCAGFGDMTL--LSSIVTLEELNIQK 477

Query: 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL---A 366
                SG+  L  L  L  +N+    IS      +    SL  L L++     TGL    
Sbjct: 478 CADIISGVGCLGTLPYLRVLNVKEVHISSLDFTGIGASKSLLQLTLES----ITGLIDVE 533

Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
           AL ++  L  L L G    D+G   L N   L+ L++ G    +  ++ +    ++  LN
Sbjct: 534 ALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTMVSLN 593

Query: 427 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
           LS    +T+  +  IS L  L  LN++N    +AG
Sbjct: 594 LSHCWKMTN--VSHISSLEALNELNLNNCFGINAG 626


>gi|167862002|gb|ACA05700.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|322952083|gb|ADX21041.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|167861924|gb|ACA05661.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLSDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 153/355 (43%), Gaps = 95/355 (26%)

Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN               
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
               NL  +  S +++TD  I  LK L KL              +D L          +N
Sbjct: 99  ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             Q++D      + + +L  L L  N+ITD  +  LK LTNL  L L S  I D  +  L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
           +GL +L+ L   + QV  + L+ L+ LT LE +++S   +SD S+  LA L++L+SL   
Sbjct: 183 SGLTSLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT 237

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
             QI+D  +  L  LT L  L L G ++ D G   L +  NL  L++            I
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLSDLDLANN--------QI 285

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS----AGLRHLNH 467
            +L+ L                   SGLT L  L +  ++I++    AGL  L +
Sbjct: 286 SNLAPL-------------------SGLTKLTELKLGANQISNISPLAGLTALTN 321


>gi|219821369|gb|ACL37824.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 40  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 94  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 368

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  L+NL 
Sbjct: 32  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 88  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 251

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 252 ISPLAGLTALTN 263


>gi|390335362|ref|XP_003724129.1| PREDICTED: uncharacterized protein LOC100890653 [Strongylocentrotus
           purpuratus]
          Length = 990

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 108/439 (24%), Positives = 195/439 (44%), Gaps = 65/439 (14%)

Query: 2   LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
           +P  +++++  EL  S  L   +L  F  C LQ L L  Y    ++ +  +      L S
Sbjct: 589 VPPTVAERLLTELKKSGHLRPKTLMMFIPCHLQRLALDCYKYTTNELLQTVRPH-IHLSS 647

Query: 62  VDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           ++L+    +TD GL+ +     LQ L+ +    ++D   + ++  S+LT+L       +T
Sbjct: 648 LNLASCPLITDQGLLQITSLKKLQHLNLSNNKSLTDKVFQTVQEFSSLTTL-LLEGTGVT 706

Query: 121 AQGMKAFAGL--INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
             G++ F  +   NL  L L R                           +TD  +  L+ 
Sbjct: 707 DAGLETFVAVPPPNLTNLSLNRTN-------------------------VTDMAVLFLAR 741

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           L+ LK+L                GL++  + +LE           +  L  L  LN++R 
Sbjct: 742 LSKLKNL----------------GLEQTQVKSLE----------HVGHLSQLVSLNVSRN 775

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNE-IT-DECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
           +L  D   K  ++  LKVL++   E IT DE L  L+GL  ++    D     D GL  +
Sbjct: 776 RLQRDALLKLHQVTHLKVLHISHVEGITGDEALTCLQGLQLMQLSLPDRHTTTDNGLKCI 835

Query: 297 TG--LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
            G  LC++   + S+  +  +G+ HL+ +T+L  ++++ T ++   ++ L+GL+ L  L+
Sbjct: 836 AGMSLCSIDLTDYSN--ITDAGIHHLADMTSLHKLSITNTKVTSAGMQYLSGLTELLELH 893

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSG--AAYLRNFKNLRSLEICGGGLTDAG 412
           LD   + D G   +  LT L  L +   +ITD    +  + +  ++  L +    +++ G
Sbjct: 894 LDRTLVDDEGAKVIGQLTKLQVLSMAETKITDRFLLSNVINSCPHISRLNLSRTNISERG 953

Query: 413 VKHIKDLSSLTLLNLSQNC 431
           +  +  L  LTLLNL   C
Sbjct: 954 IT-VLSLPYLTLLNLDYTC 971



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 143/292 (48%), Gaps = 32/292 (10%)

Query: 181 NLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNL-NR 237
           +L+ L + C K T + +   ++    L+ LNL  CP +T   L  +++L  L +LNL N 
Sbjct: 619 HLQRLALDCYKYTTNELLQTVRPHIHLSSLNLASCPLITDQGLLQITSLKKLQHLNLSNN 678

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITD---ECLVHLKGLTNLESLNLDSCGIGDEGLV 294
             L+D   +   +  SL  L L    +TD   E  V +    NL +L+L+   + D  ++
Sbjct: 679 KSLTDKVFQTVQEFSSLTTLLLEGTGVTDAGLETFVAVPP-PNLTNLSLNRTNVTDMAVL 737

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
            L  L  LK L L  TQV S  L H+  L+ L S+N+S   +   +L KL  ++ LK L+
Sbjct: 738 FLARLSKLKNLGLEQTQVKS--LEHVGHLSQLVSLNVSRNRLQRDALLKLHQVTHLKVLH 795

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
           +   +   TG  ALT L GL    L    + D                      TD G+K
Sbjct: 796 ISHVEGI-TGDEALTCLQGL---QLMQLSLPDRHTT------------------TDNGLK 833

Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
            I  +S L  ++L+   N+TD  +  ++ +T L  L+++N+++TSAG+++L+
Sbjct: 834 CIAGMS-LCSIDLTDYSNITDAGIHHLADMTSLHKLSITNTKVTSAGMQYLS 884



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 143/285 (50%), Gaps = 13/285 (4%)

Query: 43  GVNDKWMDV-IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
           GV D  ++  +A    +L ++ L+ ++VTD  ++ L   S L++L      Q     LEH
Sbjct: 704 GVTDAGLETFVAVPPPNLTNLSLNRTNVTDMAVLFLARLSKLKNLGLE---QTQVKSLEH 760

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLES 159
           +  LS L SL+  RN  +    +     + +L  L +     I G   L  L+GL +L  
Sbjct: 761 VGHLSQLVSLNVSRNR-LQRDALLKLHQVTHLKVLHISHVEGITGDEALTCLQGL-QLMQ 818

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
           L++   +  TD+ +K ++G++ L S+ ++  S +TD+GI +L  +  L  L++    VT+
Sbjct: 819 LSLPDRHTTTDNGLKCIAGMS-LCSIDLTDYSNITDAGIHHLADMTSLHKLSITNTKVTS 877

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH--LKGLT 276
           A +  LS L  L  L+L+R  + D+G +   ++  L+VL++   +ITD  L+   +    
Sbjct: 878 AGMQYLSGLTELLELHLDRTLVDDEGAKVIGQLTKLQVLSMAETKITDRFLLSNVINSCP 937

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
           ++  LNL    I + G+  L+ L  L  L L  T V     +HL+
Sbjct: 938 HISRLNLSRTNISERGITVLS-LPYLTLLNLDYTCVSVDCAQHLT 981


>gi|112961667|gb|ABI28464.1| truncated internalin A [Listeria monocytogenes]
          Length = 556

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 49  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 154

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTGLKLGANQISN--I 261

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 377

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 378 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 41  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 96

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 97  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 149

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 150 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 205

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 206 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTGLKLGANQISN 260

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 261 ISPLAGLTALTN 272


>gi|167861906|gb|ACA05652.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|223006796|gb|ACM69355.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|112959500|gb|ABI27277.1| internalin A [Listeria monocytogenes]
 gi|112959502|gb|ABI27278.1| internalin A [Listeria monocytogenes]
 gi|112959510|gb|ABI27282.1| internalin A [Listeria monocytogenes]
 gi|112959512|gb|ABI27283.1| internalin A [Listeria monocytogenes]
 gi|112959524|gb|ABI27289.1| internalin A [Listeria monocytogenes]
 gi|112959530|gb|ABI27292.1| internalin A [Listeria monocytogenes]
          Length = 737

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 37  LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 90

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 91  IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 142

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 143 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 195

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 196 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 249

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 250 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 307

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 308 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNV 365

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 366 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 396



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 29  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 81

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 82  TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 136

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 137 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 194

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 195 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 249

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 250 LAGLTALTN 258


>gi|85679236|gb|ABC72034.1| InlA [Listeria monocytogenes]
          Length = 794

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 99  LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 152

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 153 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 204

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 205 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 257

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 258 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 311

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 312 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 369

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 370 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKTNV 427

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 428 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 458



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 91  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 143

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 144 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 198

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 199 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 256

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 257 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 311

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 312 LAGLTALTN 320


>gi|223006806|gb|ACM69360.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|313485075|gb|ADR53008.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|219821333|gb|ACL37800.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 40  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 94  NQIT--DINPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVKYKV 368

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 32  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 88  GLTLFNNQITD--INPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 251

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 252 ISPLAGLTALTN 263


>gi|290990752|ref|XP_002678000.1| predicted protein [Naegleria gruberi]
 gi|284091610|gb|EFC45256.1| predicted protein [Naegleria gruberi]
          Length = 369

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 116/239 (48%), Gaps = 2/239 (0%)

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           +S L  L YL++ +  +   G +  SK+ +LK L +  N I     + +  +  L SL +
Sbjct: 130 ISKLKELTYLDIGKNSVGRKGAKYISKMKNLKTLQIPLNNIGPNGAISISKMKQLTSLVI 189

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLR 342
               I  EG   +  + NLK L++S    G  G+R LS GL NL S+++S   I+    +
Sbjct: 190 CWNMIDLEGFEAIARMNNLKYLKISGYYNGPEGMRLLSSGLVNLTSLDVSRNEINPEGAK 249

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
            L  + +L  L      +   G+  ++ L  LT LD+    I   GA +++  KNL+ L 
Sbjct: 250 YLGEMKNLIELRATFNIVELGGIKFISQLRNLTLLDVQSNIIESEGARFIKKLKNLKILN 309

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
           +    +   G  +I +++ LT L++S N +   +    IS L  LV L++S++ I   G
Sbjct: 310 VSATKMNATGANYIGEMTQLTELDISYN-HFGVEGARAISRLPNLVILDISSNNIGPEG 367



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 129/281 (45%), Gaps = 30/281 (10%)

Query: 91  CIQISDGGLEH-----LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
           C+ I++ GL+      +  L  LT L   +N ++  +G K  + + NL  L +       
Sbjct: 114 CLSINENGLKEKEAKLISKLKELTYLDIGKN-SVGRKGAKYISKMKNLKTLQIPLNNIGP 172

Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
            G +++  + +L SL I W N I     + ++ + NLK L+IS          Y  G + 
Sbjct: 173 NGAISISKMKQLTSLVICW-NMIDLEGFEAIARMNNLKYLKIS---------GYYNGPEG 222

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
           + LL+              S L +L  L+++R +++ +G +   ++ +L  L   FN + 
Sbjct: 223 MRLLS--------------SGLVNLTSLDVSRNEINPEGAKYLGEMKNLIELRATFNIVE 268

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
              +  +  L NL  L++ S  I  EG   +  L NLK L +S T++ ++G  ++  +T 
Sbjct: 269 LGGIKFISQLRNLTLLDVQSNIIESEGARFIKKLKNLKILNVSATKMNATGANYIGEMTQ 328

Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
           L  +++S+        R ++ L +L  L++ +  I   G A
Sbjct: 329 LTELDISYNHFGVEGARAISRLPNLVILDISSNNIGPEGAA 369



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 87/387 (22%), Positives = 158/387 (40%), Gaps = 46/387 (11%)

Query: 22  EVSLEAFRDCALQDLCLGQY-------------PGVNDKWMDVIASQGSSLLSVDLSGSD 68
           EVS+  F D  L D  + +              P ++ +W   + +Q S L  +D     
Sbjct: 11  EVSIRNFSDNFLPDDIIHEIMSFLTGWEILKYCPLISKQWTYFLINQYSKL-CLDFH-QI 68

Query: 69  VTDSGLIHLKDCSNLQSL---DFNFCIQISDGG-LEHLRGLSNLTSLSFRRNNAITAQGM 124
           + +  + HL++   L S+     N+   I D   L  L  + NLT LS   N  +  +  
Sbjct: 69  IQEERVQHLRNSQVLNSIRNVKVNYANLIRDKQFLTVLSLMKNLTCLSINEN-GLKEKEA 127

Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           K  + L  L  LD+ +                         N +     K +S + NLK+
Sbjct: 128 KLISKLKELTYLDIGK-------------------------NSVGRKGAKYISKMKNLKT 162

Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
           LQI  + +  +G   +  +++LT L +    +     ++++ + +L YL ++      +G
Sbjct: 163 LQIPLNNIGPNGAISISKMKQLTSLVICWNMIDLEGFEAIARMNNLKYLKISGYYNGPEG 222

Query: 245 CEKFSK-IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
               S  + +L  L++  NEI  E   +L  + NL  L      +   G+  ++ L NL 
Sbjct: 223 MRLLSSGLVNLTSLDVSRNEINPEGAKYLGEMKNLIELRATFNIVELGGIKFISQLRNLT 282

Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
            L++    + S G R +  L NL+ +N+S T ++      +  ++ L  L++        
Sbjct: 283 LLDVQSNIIESEGARFIKKLKNLKILNVSATKMNATGANYIGEMTQLTELDISYNHFGVE 342

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAA 390
           G  A++ L  L  LD+    I   GAA
Sbjct: 343 GARAISRLPNLVILDISSNNIGPEGAA 369



 Score = 46.2 bits (108), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 69/150 (46%)

Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
           LS + NL  ++++  G+ +   + ++ L  L  L++    +   G   ++ +  L  L +
Sbjct: 106 LSLMKNLTCLSINENGLKEKEAKLISKLKELTYLDIGKNSVGRKGAKYISKMKNLKTLQI 165

Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
               I  +GA  +   K L SL IC   +   G + I  +++L  L +S   N  +    
Sbjct: 166 PLNNIGPNGAISISKMKQLTSLVICWNMIDLEGFEAIARMNNLKYLKISGYYNGPEGMRL 225

Query: 440 LISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           L SGL  L SL+VS + I   G ++L   +
Sbjct: 226 LSSGLVNLTSLDVSRNEINPEGAKYLGEMK 255


>gi|22347566|gb|AAM95928.1| internalin A precursor [Listeria monocytogenes]
          Length = 746

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 44  LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 97

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 98  IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 149

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 150 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 202

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 203 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 256

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 257 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 314

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 315 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKTNV 372

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 373 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 403



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 36  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 88

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 89  TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 143

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 144 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 201

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 202 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 256

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 257 LAGLTALTN 265


>gi|22347570|gb|AAM95930.1| internalin A precursor [Listeria monocytogenes]
          Length = 744

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 44  LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 97

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 98  IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLAN 149

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 150 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 202

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 203 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 256

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 257 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 314

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 315 NKVSDVSSLASLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 372

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 373 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 403



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  L+NL 
Sbjct: 34  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 89

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLTNL+   LSF G   
Sbjct: 90  GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 141

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 142 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 197

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 198 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 252

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 253 NISPLAGLTALTN 265


>gi|219821297|gb|ACL37776.1| internalin A [Listeria monocytogenes]
 gi|219821303|gb|ACL37780.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 42  LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 95

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 96  IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLAN 147

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 148 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 200

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 201 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 254

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 255 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 312

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 313 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNV 370

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 371 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  L+NL 
Sbjct: 32  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 88  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 251

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 252 ISPLAGLTALTN 263


>gi|219821282|gb|ACL37766.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 40  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 94  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
            +L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 253 SSLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKV 368

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  L+NL 
Sbjct: 32  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLTNL+   LSF G   
Sbjct: 88  GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 139

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 140 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 195

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 196 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 251 NISSLAGLTALTN 263


>gi|290991352|ref|XP_002678299.1| predicted protein [Naegleria gruberi]
 gi|284091911|gb|EFC45555.1| predicted protein [Naegleria gruberi]
          Length = 383

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 167/353 (47%), Gaps = 22/353 (6%)

Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
           TSLS+R  +A      ++   LI  V  ++E        LV+   L  L+SL++     I
Sbjct: 29  TSLSYR--DACLIAKFESLEELIGEVGDEME-------ALVDY--LPNLKSLDVGLVQEI 77

Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
              +++ +S L NL +  I  S +    +  +  + +LT LN+ G P+ +  L  +  L 
Sbjct: 78  CYENVEYISELQNLTTFSIRYSNIGRKHLQIIGEMSQLTDLNISGNPINS--LLPIRPLT 135

Query: 229 SLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDE-CLVHLKGLTNLESLNLDSC 286
            +  L+   C  L DDG         L+ LNL  N IT E C+   +   NL  L+L+  
Sbjct: 136 RITSLSAADCSFLGDDGIYPIVNFKGLQKLNLSSNGITWEGCMFISEKFPNLSHLSLNET 195

Query: 287 GIGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKL 344
            I D  +  L+ +  L  L++ ++ ++   G++ +S  LTNL  +N+S   ++D  L   
Sbjct: 196 RICDGAIKRLSKMKQLTYLDVGNNAKITMEGIKLISNNLTNLTHLNISSNNVTDEGLMMA 255

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTG--LTHLDLFGARITDSGAAYL-RNFKNLRSL 401
             L  L+ L +   QITD+G+   +   G  L  L L    IT     YL     NL+ L
Sbjct: 256 CDLPKLQELFVGHNQITDSGINEFSEKIGNKLKILSLSRNNITSLCTQYLCTKLTNLKKL 315

Query: 402 EICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
            + G  +TD  VK I + +  L  L++S N N+TDK+LE +     L  ++V+
Sbjct: 316 YLAGVSITDEDVKLICQCMKLLIYLDVSWN-NVTDKSLEYVIASESLREVDVN 367



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 155/339 (45%), Gaps = 48/339 (14%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
            NL+SLD     +I    +E++  L NLT+ S R +N I  + ++    +  L  L+   
Sbjct: 64  PNLKSLDVGLVQEICYENVEYISELQNLTTFSIRYSN-IGRKHLQIIGEMSQLTDLN--- 119

Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAY 199
              I G  +N                      + P+  LT + SL  + CS + D GI  
Sbjct: 120 ---ISGNPIN---------------------SLLPIRPLTRITSLSAADCSFLGDDGIYP 155

Query: 200 L---KGLQKLTL----LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
           +   KGLQKL L    +  EGC   +    +LS      +L+LN  ++ D   ++ SK+ 
Sbjct: 156 IVNFKGLQKLNLSSNGITWEGCMFISEKFPNLS------HLSLNETRICDGAIKRLSKMK 209

Query: 253 SLKVLNLGFN-EITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
            L  L++G N +IT E +  +   LTNL  LN+ S  + DEGL+    L  L+ L +   
Sbjct: 210 QLTYLDVGNNAKITMEGIKLISNNLTNLTHLNISSNNVTDEGLMMACDLPKLQELFVGHN 269

Query: 311 QVGSSGLRHLSGL--TNLESINLSFTGISDGSLRKL-AGLSSLKSLNLDARQITDTGLAA 367
           Q+  SG+   S      L+ ++LS   I+    + L   L++LK L L    ITD  +  
Sbjct: 270 QITDSGINEFSEKIGNKLKILSLSRNNITSLCTQYLCTKLTNLKKLYLAGVSITDEDVKL 329

Query: 368 LTS-LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
           +   +  L +LD+    +TD    Y+   ++LR +++ G
Sbjct: 330 ICQCMKLLIYLDVSWNNVTDKSLEYVIASESLREVDVNG 368


>gi|322952092|gb|ADX21045.1| internalin A [Listeria monocytogenes]
 gi|322952094|gb|ADX21046.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|313485056|gb|ADR53002.1| InlA [Listeria monocytogenes]
          Length = 789

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLT+L+   LSF G   
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQV 197

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 309 NISPLAGLTALTN 321


>gi|219821390|gb|ACL37838.1| internalin A [Listeria monocytogenes]
          Length = 744

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 42  LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 95

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 96  IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 147

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 148 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 200

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 201 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 254

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 255 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 312

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 313 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKTNV 370

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 371 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 34  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 86

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 87  TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 141

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 142 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 199

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 254

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 255 LAGLTALTN 263


>gi|46906689|ref|YP_013078.1| internalin A [Listeria monocytogenes serotype 4b str. F2365]
 gi|254932755|ref|ZP_05266114.1| internalin A [Listeria monocytogenes HPB2262]
 gi|405748809|ref|YP_006672275.1| internalin A [Listeria monocytogenes ATCC 19117]
 gi|405751670|ref|YP_006675135.1| internalin A [Listeria monocytogenes SLCC2378]
 gi|417316727|ref|ZP_12103366.1| internalin A [Listeria monocytogenes J1-220]
 gi|424713328|ref|YP_007014043.1| Internalin-A [Listeria monocytogenes serotype 4b str. LL195]
 gi|424822183|ref|ZP_18247196.1| Internalin-A [Listeria monocytogenes str. Scott A]
 gi|50400895|sp|Q723K6.1|INLA_LISMF RecName: Full=Internalin-A; Flags: Precursor
 gi|46879954|gb|AAT03255.1| internalin A [Listeria monocytogenes serotype 4b str. F2365]
 gi|130774757|gb|ABO32393.1| InlA [Listeria monocytogenes]
 gi|130774763|gb|ABO32396.1| InlA [Listeria monocytogenes]
 gi|130774781|gb|ABO32405.1| InlA [Listeria monocytogenes]
 gi|130774785|gb|ABO32407.1| InlA [Listeria monocytogenes]
 gi|130774789|gb|ABO32409.1| InlA [Listeria monocytogenes]
 gi|167861870|gb|ACA05634.1| InlA [Listeria monocytogenes]
 gi|167861880|gb|ACA05639.1| InlA [Listeria monocytogenes]
 gi|167861882|gb|ACA05640.1| InlA [Listeria monocytogenes]
 gi|167861884|gb|ACA05641.1| InlA [Listeria monocytogenes]
 gi|167861886|gb|ACA05642.1| InlA [Listeria monocytogenes]
 gi|167861896|gb|ACA05647.1| InlA [Listeria monocytogenes]
 gi|167861898|gb|ACA05648.1| InlA [Listeria monocytogenes]
 gi|167861910|gb|ACA05654.1| InlA [Listeria monocytogenes]
 gi|167861912|gb|ACA05655.1| InlA [Listeria monocytogenes]
 gi|167861952|gb|ACA05675.1| InlA [Listeria monocytogenes]
 gi|167861958|gb|ACA05678.1| InlA [Listeria monocytogenes]
 gi|167861960|gb|ACA05679.1| InlA [Listeria monocytogenes]
 gi|167861966|gb|ACA05682.1| InlA [Listeria monocytogenes]
 gi|167861988|gb|ACA05693.1| InlA [Listeria monocytogenes]
 gi|167861996|gb|ACA05697.1| InlA [Listeria monocytogenes]
 gi|167862008|gb|ACA05703.1| InlA [Listeria monocytogenes]
 gi|167862010|gb|ACA05704.1| InlA [Listeria monocytogenes]
 gi|167862014|gb|ACA05706.1| InlA [Listeria monocytogenes]
 gi|167862016|gb|ACA05707.1| InlA [Listeria monocytogenes]
 gi|194239380|emb|CAQ76830.1| internalin A [Listeria monocytogenes]
 gi|194239394|emb|CAQ76837.1| internalin A [Listeria monocytogenes]
 gi|194326167|emb|CAQ77242.1| internalin A [Listeria monocytogenes]
 gi|223006786|gb|ACM69350.1| internalin A [Listeria monocytogenes]
 gi|223006788|gb|ACM69351.1| internalin A [Listeria monocytogenes]
 gi|223006798|gb|ACM69356.1| internalin A [Listeria monocytogenes]
 gi|223006804|gb|ACM69359.1| internalin A [Listeria monocytogenes]
 gi|223006810|gb|ACM69362.1| internalin A [Listeria monocytogenes]
 gi|293584308|gb|EFF96340.1| internalin A [Listeria monocytogenes HPB2262]
 gi|294358391|gb|ADE73848.1| InlA [Listeria monocytogenes]
 gi|294358403|gb|ADE73854.1| InlA [Listeria monocytogenes]
 gi|298359884|gb|ADI77521.1| internalin A [Listeria monocytogenes]
 gi|298359898|gb|ADI77528.1| internalin A [Listeria monocytogenes]
 gi|298359902|gb|ADI77530.1| internalin A [Listeria monocytogenes]
 gi|298359908|gb|ADI77533.1| internalin A [Listeria monocytogenes]
 gi|298359940|gb|ADI77549.1| internalin A [Listeria monocytogenes]
 gi|298359948|gb|ADI77553.1| internalin A [Listeria monocytogenes]
 gi|298360056|gb|ADI77607.1| internalin A [Listeria monocytogenes]
 gi|298360094|gb|ADI77626.1| internalin A [Listeria monocytogenes]
 gi|298360148|gb|ADI77653.1| internalin A [Listeria monocytogenes]
 gi|298360270|gb|ADI77714.1| internalin A [Listeria monocytogenes]
 gi|298360288|gb|ADI77723.1| internalin A [Listeria monocytogenes]
 gi|298360324|gb|ADI77741.1| internalin A [Listeria monocytogenes]
 gi|298360326|gb|ADI77742.1| internalin A [Listeria monocytogenes]
 gi|298360350|gb|ADI77754.1| internalin A [Listeria monocytogenes]
 gi|298360362|gb|ADI77760.1| internalin A [Listeria monocytogenes]
 gi|298360456|gb|ADI77807.1| internalin A [Listeria monocytogenes]
 gi|298360480|gb|ADI77819.1| internalin A [Listeria monocytogenes]
 gi|298360508|gb|ADI77833.1| internalin A [Listeria monocytogenes]
 gi|298360520|gb|ADI77839.1| internalin A [Listeria monocytogenes]
 gi|298360554|gb|ADI77856.1| internalin A [Listeria monocytogenes]
 gi|298360632|gb|ADI77895.1| internalin A [Listeria monocytogenes]
 gi|298360634|gb|ADI77896.1| internalin A [Listeria monocytogenes]
 gi|298360662|gb|ADI77910.1| internalin A [Listeria monocytogenes]
 gi|328475915|gb|EGF46639.1| internalin A [Listeria monocytogenes J1-220]
 gi|332310863|gb|EGJ23958.1| Internalin-A [Listeria monocytogenes str. Scott A]
 gi|340052073|emb|CBY84388.1| internalin A [Listeria monocytogenes]
 gi|340052075|emb|CBY84389.1| internalin A [Listeria monocytogenes]
 gi|404218009|emb|CBY69373.1| internalin A (LPXTG motif) [Listeria monocytogenes ATCC 19117]
 gi|404220870|emb|CBY72233.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2378]
 gi|424012512|emb|CCO63052.1| Internalin-A [Listeria monocytogenes serotype 4b str. LL195]
 gi|443428812|gb|AGC92205.1| internalin A [Listeria monocytogenes]
 gi|443428814|gb|AGC92206.1| internalin A [Listeria monocytogenes]
 gi|443428816|gb|AGC92207.1| internalin A [Listeria monocytogenes]
 gi|443428818|gb|AGC92208.1| internalin A [Listeria monocytogenes]
 gi|443428826|gb|AGC92212.1| internalin A [Listeria monocytogenes]
 gi|443428836|gb|AGC92217.1| internalin A [Listeria monocytogenes]
 gi|443428840|gb|AGC92219.1| internalin A [Listeria monocytogenes]
 gi|443428852|gb|AGC92225.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|298359764|gb|ADI77461.1| truncated internalin A [Listeria monocytogenes]
 gi|298359862|gb|ADI77510.1| truncated internalin A [Listeria monocytogenes]
 gi|298360070|gb|ADI77614.1| truncated internalin A [Listeria monocytogenes]
 gi|298360108|gb|ADI77633.1| truncated internalin A [Listeria monocytogenes]
 gi|298360174|gb|ADI77666.1| truncated internalin A [Listeria monocytogenes]
 gi|298360196|gb|ADI77677.1| truncated internalin A [Listeria monocytogenes]
 gi|298360268|gb|ADI77713.1| truncated internalin A [Listeria monocytogenes]
 gi|298360290|gb|ADI77724.1| truncated internalin A [Listeria monocytogenes]
 gi|298360536|gb|ADI77847.1| truncated internalin A [Listeria monocytogenes]
 gi|298360608|gb|ADI77883.1| truncated internalin A [Listeria monocytogenes]
 gi|298360658|gb|ADI77908.1| truncated internalin A [Listeria monocytogenes]
 gi|298360684|gb|ADI77921.1| truncated internalin A [Listeria monocytogenes]
          Length = 605

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTGLKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLTNL+   LSF G   
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTGLKLGANQIS 308

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 309 NISPLAGLTALTN 321


>gi|112961610|gb|ABI28426.1| internalin A [Listeria monocytogenes]
 gi|112961613|gb|ABI28428.1| internalin A [Listeria monocytogenes]
 gi|112961625|gb|ABI28436.1| internalin A [Listeria monocytogenes]
 gi|112961628|gb|ABI28438.1| internalin A [Listeria monocytogenes]
 gi|112961631|gb|ABI28440.1| internalin A [Listeria monocytogenes]
 gi|112961634|gb|ABI28442.1| internalin A [Listeria monocytogenes]
 gi|112961670|gb|ABI28466.1| internalin A [Listeria monocytogenes]
 gi|112961673|gb|ABI28468.1| internalin A [Listeria monocytogenes]
 gi|112961676|gb|ABI28470.1| internalin A [Listeria monocytogenes]
 gi|112961688|gb|ABI28478.1| internalin A [Listeria monocytogenes]
 gi|112961703|gb|ABI28488.1| internalin A [Listeria monocytogenes]
 gi|112961712|gb|ABI28494.1| internalin A [Listeria monocytogenes]
 gi|112961715|gb|ABI28496.1| internalin A [Listeria monocytogenes]
 gi|112961724|gb|ABI28502.1| internalin A [Listeria monocytogenes]
 gi|112961733|gb|ABI28508.1| internalin A [Listeria monocytogenes]
 gi|112961736|gb|ABI28510.1| internalin A [Listeria monocytogenes]
 gi|112961739|gb|ABI28512.1| internalin A [Listeria monocytogenes]
 gi|112961742|gb|ABI28514.1| internalin A [Listeria monocytogenes]
 gi|112961745|gb|ABI28516.1| internalin A [Listeria monocytogenes]
 gi|112961754|gb|ABI28522.1| internalin A [Listeria monocytogenes]
          Length = 751

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 51  LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 104

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 105 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 156

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 157 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 209

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 210 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 263

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 264 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 321

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 322 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNV 379

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 380 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 410



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 43  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 95

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 96  TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 150

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 151 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 208

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 209 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 263

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 264 LAGLTALTN 272


>gi|219821291|gb|ACL37772.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 42  LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 95

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 96  IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNKVTD--LKPLAN 147

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 148 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 200

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 201 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 254

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 255 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 312

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 313 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKANV 370

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 371 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  L+NL 
Sbjct: 32  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLT+L+   LSF G    
Sbjct: 88  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNKVT 140

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 251

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 252 ISPLAGLTALTN 263


>gi|421898414|ref|ZP_16328780.1| lrr-gala family type III effector protein (gala 2) [Ralstonia
            solanacearum MolK2]
 gi|206589620|emb|CAQ36581.1| lrr-gala family type III effector protein (gala 2) [Ralstonia
            solanacearum MolK2]
          Length = 1051

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 171/377 (45%), Gaps = 7/377 (1%)

Query: 57   SSLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
             S+  +DLSG   S V+++GL  L     L+SLD +   +I D  ++ L   ++LTSL+ 
Sbjct: 647  PSVRHLDLSGCTGSAVSEAGLAVLARLP-LESLDLS-GTRIGDREVQALASSTSLTSLNL 704

Query: 114  RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
               N I   G +A      L  L++        G+  L     L SL ++    I ++ +
Sbjct: 705  S-GNRIGNAGARALGRNTVLTALNVSANPIGDAGVQALADSQSLTSLELRGIG-IGEAGI 762

Query: 174  KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
              L+  T L+SL IS + +++   A L   Q L  L    C +T      L+ + SL  L
Sbjct: 763  AALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKANACGLTNGMAQQLARIRSLRTL 822

Query: 234  NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
             +    + D G    ++  SL+ LNL  N IT + L  L+    L SL++   G GD G 
Sbjct: 823  EVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRPLELSRTLTSLDVSGIGCGDRGA 882

Query: 294  VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
            + L+    L  L+L    +GS+G + L+    L S++L    I   + + LA    L SL
Sbjct: 883  LLLSKNRALTSLKLGFNGIGSAGAQGLAANRTLISLDLRGNTIDVDAAKALANTGCLTSL 942

Query: 354  NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
            N+   ++ D   +AL     LT LD+   R++   A  L     L SL I    +   G 
Sbjct: 943  NVSDCKLDDEAASALAESLTLTSLDVSVNRLSGQAARALAGNATLTSLNISHNHIGPDGA 1002

Query: 414  KHIKDLSSLTLLNLSQN 430
            + + +  SLT L+   N
Sbjct: 1003 QALAESPSLTFLDARAN 1019



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 155/351 (44%), Gaps = 4/351 (1%)

Query: 44   VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
            + D+ +  +AS  +SL S++LSG+ + ++G   L   + L +L+ +    I D G++ L 
Sbjct: 685  IGDREVQALASS-TSLTSLNLSGNRIGNAGARALGRNTVLTALNVS-ANPIGDAGVQALA 742

Query: 104  GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
               +LTSL  R    I   G+ A A    L  LD+            L     L SL   
Sbjct: 743  DSQSLTSLELR-GIGIGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKAN 801

Query: 164  WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
             C  +T+   + L+ + +L++L++  + + D+G+  +     L  LNL   P+T   L  
Sbjct: 802  ACG-LTNGMAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRP 860

Query: 224  LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
            L    +L  L+++     D G    SK  +L  L LGFN I       L     L SL+L
Sbjct: 861  LELSRTLTSLDVSGIGCGDRGALLLSKNRALTSLKLGFNGIGSAGAQGLAANRTLISLDL 920

Query: 284  DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
                I  +    L     L  L +SD ++       L+    L S+++S   +S  + R 
Sbjct: 921  RGNTIDVDAAKALANTGCLTSLNVSDCKLDDEAASALAESLTLTSLDVSVNRLSGQAARA 980

Query: 344  LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            LAG ++L SLN+    I   G  AL     LT LD     I ++GA  L N
Sbjct: 981  LAGNATLTSLNISHNHIGPDGAQALAESPSLTFLDARANGIGEAGARALEN 1031



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 100/192 (52%), Gaps = 1/192 (0%)

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           LESL+L    IGD  +  L    +L  L LS  ++G++G R L   T L ++N+S   I 
Sbjct: 675 LESLDLSGTRIGDREVQALASSTSLTSLNLSGNRIGNAGARALGRNTVLTALNVSANPIG 734

Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
           D  ++ LA   SL SL L    I + G+AAL S T L  LD+    +++  AA L   + 
Sbjct: 735 DAGVQALADSQSLTSLELRGIGIGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQT 794

Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
           L SL+    GLT+   + +  + SL  L +  N ++ D  +  I+    L +LN+S++ I
Sbjct: 795 LASLKANACGLTNGMAQQLARIRSLRTLEVGSN-SIGDTGVLAIARNASLRTLNLSHNPI 853

Query: 458 TSAGLRHLNHAR 469
           T  GLR L  +R
Sbjct: 854 TLQGLRPLELSR 865



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 131/291 (45%), Gaps = 16/291 (5%)

Query: 43   GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
            G+ +  +  +AS  + L S+D+S +D+++     L     L SL  N C  +++G  + L
Sbjct: 756  GIGEAGIAALASN-TVLRSLDISSNDLSEQSAAELARNQTLASLKANAC-GLTNGMAQQL 813

Query: 103  RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE---- 158
              + +L +L    +N+I   G+ A A   +L  L+L          + L+GL  LE    
Sbjct: 814  ARIRSLRTLEVG-SNSIGDTGVLAIARNASLRTLNLSHNP------ITLQGLRPLELSRT 866

Query: 159  --SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
              SL++    C  D     LS    L SL++  + +  +G   L   + L  L+L G  +
Sbjct: 867  LTSLDVSGIGC-GDRGALLLSKNRALTSLKLGFNGIGSAGAQGLAANRTLISLDLRGNTI 925

Query: 217  TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
                  +L+  G L  LN++ C+L D+     ++  +L  L++  N ++ +    L G  
Sbjct: 926  DVDAAKALANTGCLTSLNVSDCKLDDEAASALAESLTLTSLDVSVNRLSGQAARALAGNA 985

Query: 277  NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
             L SLN+    IG +G   L    +L  L+     +G +G R L   T ++
Sbjct: 986  TLTSLNISHNHIGPDGAQALAESPSLTFLDARANGIGEAGARALENNTRMQ 1036



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 85/180 (47%), Gaps = 19/180 (10%)

Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
           E + +L GL  LESLN+    IGD+G   L    +L+ L  ++  +G++G R L+    L
Sbjct: 145 EAIAYLAGLP-LESLNVAGADIGDDGARLLAANPSLRALNAANGGIGAAGARALAESPVL 203

Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL------- 379
            S++L+  GI D   R LAG  SL SL +    +TD G  AL     LT LDL       
Sbjct: 204 ASLDLTRNGIGDEGARALAGSRSLTSLAVLNCLVTDVGARALAGNGTLTALDLGNLITET 263

Query: 380 -----------FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
                          IT  GA  L   ++L SL I G    D GV+ +    +LT LN++
Sbjct: 264 GNELEQAGYDRTANEITARGAWALAQNRSLTSLSIQGNLCGDGGVQALARNRTLTSLNVA 323



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 105/259 (40%), Gaps = 13/259 (5%)

Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQK-LTLLNLEGCPVTAACLDSLSALG--SLFYLNLN 236
            NL SLQ+  +      +  LK L   L  L+L  C   A   ++++ L    L  LN+ 
Sbjct: 106 PNLTSLQLEGNFT----LQDLKALPATLRHLDLSACTGGAKSFEAIAYLAGLPLESLNVA 161

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
              + DDG    +   SL+ LN     I       L     L SL+L   GIGDEG   L
Sbjct: 162 GADIGDDGARLLAANPSLRALNAANGGIGAAGARALAESPVLASLDLTRNGIGDEGARAL 221

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
            G  +L  L + +  V   G R L+G   L +++L       G+  + AG       +  
Sbjct: 222 AGSRSLTSLAVLNCLVTDVGARALAGNGTLTALDLGNLITETGNELEQAGY------DRT 275

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
           A +IT  G  AL     LT L + G    D G   L   + L SL +    +T A    +
Sbjct: 276 ANEITARGAWALAQNRSLTSLSIQGNLCGDGGVQALARNRTLTSLNVAYTDMTPASATEL 335

Query: 417 KDLSSLTLLNLSQNCNLTD 435
                LT L++  N  L D
Sbjct: 336 ARNPVLTSLSVRWNYGLGD 354


>gi|219821357|gb|ACL37816.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 40  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 94  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESIIATNNQISDITPLGILTNLDEL 198

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKV 368

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  L+NL 
Sbjct: 32  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLTNL+   LSF G   
Sbjct: 88  GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 139

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  +     +I+D     L    NL
Sbjct: 140 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESIIATNNQISD--ITPLGILTNL 195

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 196 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 251 NISPLAGLTALTN 263


>gi|219821330|gb|ACL37798.1| internalin A [Listeria monocytogenes]
 gi|219821348|gb|ACL37810.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 40  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 94  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAAHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKV 368

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  L+NL 
Sbjct: 32  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 88  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 251

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 252 ISPLAGLTALTN 263


>gi|167523190|ref|XP_001745932.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775733|gb|EDQ89356.1| predicted protein [Monosiga brevicollis MX1]
          Length = 2039

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 143/348 (41%), Gaps = 28/348 (8%)

Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
           RNN IT+    AF  L+NL  LDLE  +          GL +L SL +K    I +  + 
Sbjct: 436 RNNPITSLAGSAFVELLNLQTLDLEDSSLTTLPAQAFAGLSRLTSLALKSRAKIANMAVN 495

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
              GL  L  L +S   + +  I    GL  LT L+L                       
Sbjct: 496 AFVGLDRLPELDLSNQAIQEIDIGMFSGLTSLTKLDLSNN-------------------R 536

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           LN  Q        F+ + +L  LN   N          +GLT L +LNL  C +      
Sbjct: 537 LNTIQ-----STAFNPLENLSALNFAGNPFNGVAASAFRGLTQLTALNLSHCNVSTLIGG 591

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
               L  +  L+LS  ++ +   +  +GL+ L  ++LS   I+  +    AGL +L +L 
Sbjct: 592 TFETLSRVTSLDLSGIKLRTLPSQAFAGLSALPELDLSNMRITTVAGNAFAGLDALTTLK 651

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
           L    IT    +A  +L  L  L+L    ++   A    N   L++L + G  L   G  
Sbjct: 652 LLGNPITTIESSAFANLPALKALNLSHLGLSVLPANTFVNLPALQNLTLTGNQLATLGAS 711

Query: 415 HIKDLSS---LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
           +     +   +  L+LS    LT  T    SGLTGL SLN+ N+ ITS
Sbjct: 712 NQPAFVACPRIRSLDLSMQ-KLTAITAHAFSGLTGLTSLNLRNNLITS 758



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 132/346 (38%), Gaps = 35/346 (10%)

Query: 82  NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
           NLQ+LD      ++    +   GLS LTSL+ +    I    + AF GL  L +LDL   
Sbjct: 453 NLQTLDLEDS-SLTTLPAQAFAGLSRLTSLALKSRAKIANMAVNAFVGLDRLPELDLSN- 510

Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
                                     I + D+   SGLT+L  L +S +++         
Sbjct: 511 ------------------------QAIQEIDIGMFSGLTSLTKLDLSNNRLNTIQSTAFN 546

Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD---DGCEKFSKIGSLKVLN 258
            L+ L+ LN  G P       +   L  L  LNL+ C +S       E  S++ SL +  
Sbjct: 547 PLENLSALNFAGNPFNGVAASAFRGLTQLTALNLSHCNVSTLIGGTFETLSRVTSLDLSG 606

Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
           +    +  +    L  L  L+  N+    +       L  L  LK L    T + SS   
Sbjct: 607 IKLRTLPSQAFAGLSALPELDLSNMRITTVAGNAFAGLDALTTLKLLGNPITTIESSAFA 666

Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA---ALTSLTGLT 375
           +L     L+++NLS  G+S         L +L++L L   Q+   G +   A  +   + 
Sbjct: 667 NLPA---LKALNLSHLGLSVLPANTFVNLPALQNLTLTGNQLATLGASNQPAFVACPRIR 723

Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
            LDL   ++T   A        L SL +    +T        +LS+
Sbjct: 724 SLDLSMQKLTAITAHAFSGLTGLTSLNLRNNLITSLATGAFANLSA 769



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 112/496 (22%), Positives = 182/496 (36%), Gaps = 102/496 (20%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L ++DL  S +T          S L SL      +I++  +    GL  L  L    N A
Sbjct: 454 LQTLDLEDSSLTTLPAQAFAGLSRLTSLALKSRAKIANMAVNAFVGLDRLPELDLS-NQA 512

Query: 119 ITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN----------------------LKGL 154
           I    +  F+GL +L KLDL   R   I     N                       +GL
Sbjct: 513 IQEIDIGMFSGLTSLTKLDLSNNRLNTIQSTAFNPLENLSALNFAGNPFNGVAASAFRGL 572

Query: 155 MKLESLNIKWCNC-------------ITDSDM----------KPLSGLTNLKSLQISCSK 191
            +L +LN+  CN              +T  D+          +  +GL+ L  L +S  +
Sbjct: 573 TQLTALNLSHCNVSTLIGGTFETLSRVTSLDLSGIKLRTLPSQAFAGLSALPELDLSNMR 632

Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
           +T        GL  LT L L G P+T     + + L +L  LNL+   LS      F  +
Sbjct: 633 ITTVAGNAFAGLDALTTLKLLGNPITTIESSAFANLPALKALNLSHLGLSVLPANTFVNL 692

Query: 252 GSL---------------------------KVLNLGFNEITDECLVHLKGLTNLESLNLD 284
            +L                           + L+L   ++T        GLT L SLNL 
Sbjct: 693 PALQNLTLTGNQLATLGASNQPAFVACPRIRSLDLSMQKLTAITAHAFSGLTGLTSLNLR 752

Query: 285 S---CGIGDEGLVNLTG------------------------LCNLKCLELSDTQVGSSGL 317
           +     +      NL+                          C +  L++ + ++ +   
Sbjct: 753 NNLITSLATGAFANLSAELASNAPSTLAHVLYLLVCFAALIKCQVTQLDIRNNKLTALAS 812

Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
               GL+ L+S++L+   I+   L   +GL++L+ L LD   + + G   L  L+ L+ L
Sbjct: 813 SSFDGLSALQSLSLANMAITKLPLGVFSGLNALQVLRLDGTGVQEIGAMVLAPLSQLSTL 872

Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
            L  +++T     +L +  +L  +++    L        +DL +L  +NL     LT   
Sbjct: 873 WLNSSQLTTITTKWLASKPHLMQVDLSHTQLQKVPTFAFEDLPALEAINLDNTAALTTVE 932

Query: 438 LELISGLTGLVSLNVS 453
               + L  L SL VS
Sbjct: 933 GSAFANLPRLQSLVVS 948



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 160/409 (39%), Gaps = 80/409 (19%)

Query: 68   DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
            +++ SGLIHL D                    +   GLS++TSL     NA+   G  AF
Sbjct: 1495 NLSHSGLIHLPD--------------------QAFEGLSHVTSLDLS-GNALQWVGQAAF 1533

Query: 128  AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
             G++ L  LDL     +  G  ++  L KL SL  K    +       L  L  L +L +
Sbjct: 1534 QGMVALTTLDLSDTQLLALGNASVAHLPKLTSL--KLPTTLRQLASAALLDLPQLATLDL 1591

Query: 188  SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
            S ++V       L  L KL               DSL    SL  L          GC  
Sbjct: 1592 SATQVQQLASGALSNLAKL---------------DSLIVSPSLETLV--------PGC-- 1626

Query: 248  FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
            F+ +  +  L+L   ++       L GL  LE++NL    +   G +   G  +L  ++L
Sbjct: 1627 FTNMTGVTSLDLAGTQLAQLEAQVLTGLPALETINLSVSAVRTLGPLAFAGPTSLSAVDL 1686

Query: 308  SDTQV--------------GSSGLRHLS---------------GLTNLESINLSFTGISD 338
            S+T +               S+ +  LS               GL++L +++LS   I+ 
Sbjct: 1687 SNTMIEAWTTNNASQGPFSKSTAIVSLSSAGMVLKTLTPHGFDGLSHLSAMDLSAADITS 1746

Query: 339  GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
                  AGLS++ +L L+  ++T  G    T L  L  LDL  A +    A+       L
Sbjct: 1747 IPALAFAGLSNVTALLLNVSRLTQLGSQGFTGLNHLLTLDLSNAPLATLPASGFAGLTTL 1806

Query: 399  RSLEICGGGLTDAGVKHIKDLS-SLTLLNLSQN--CNLTDKTLELISGL 444
            ++L + G  +T       + L+  L  L+LS N    L     + +SGL
Sbjct: 1807 QTLNMSGAHVTALPADAFQGLNVQLKDLDLSGNKLARLEAAAFKAVSGL 1855



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 102/414 (24%), Positives = 171/414 (41%), Gaps = 52/414 (12%)

Query: 80   CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN-AITAQGMKAFAGLINLVKLDL 138
             S LQ+LD ++   ISD G     GL+NLT L    N  A+  +G  AFAGL  +  LDL
Sbjct: 987  ASGLQALDLSYN-NISDIGKNAFVGLNNLTQLHIEGNPIAVLEEG--AFAGLRRVQALDL 1043

Query: 139  ERC------TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
                     T +   +  L  +    SL     N         L+ L  L S+  S +K+
Sbjct: 1044 AATAFTILPTNVFANMSALGQVTLPASLATLQSNA--------LAHLPMLASVDFSHTKL 1095

Query: 193  TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
            +      L  L +LT + L    +TA   ++LS    L  L+L+  QL+           
Sbjct: 1096 SALPEYSLVDLPRLTTVALPPNRLTAVAANALSDCPGLLSLDLSNQQLTTLETNFLIGAT 1155

Query: 253  SLKVLNLGFNE----ITDECL--------------------VHLKGLTNLESLNLDSCGI 288
             L+ LNL  N     +  E                      +H      + +L+L +  +
Sbjct: 1156 HLQALNLSHNSKLEAVQSEAFAGLTRLTTLDLTGVVLTSLALHAFSYLRITNLDLSTTQL 1215

Query: 289  GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
             D     L  L  L  ++L  T + +   R    L  L S++L  T +       L+GL+
Sbjct: 1216 ADLPTEALWNLPELAAVQLPAT-LTTLNKRSFYQLPALRSLDLRHTKVKALPTEALSGLT 1274

Query: 349  SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG-- 406
            +   L L   Q+T  G  A+     LT +DL G  +T   A+   N  ++ ++++     
Sbjct: 1275 NFTQLQLAPAQLTSWGSNAIAQCPALTKVDLAGQALTRIPASAFANLSHVVTIDLSDNLV 1334

Query: 407  -GLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
                +AG     K ++SL L++ +   NLT+ +   +    G+ +L++S++++T
Sbjct: 1335 LTTIEAGAFVGTKQVTSLQLVH-TPLTNLTNGSFTTL----GVATLDLSDAKLT 1383



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 158/377 (41%), Gaps = 62/377 (16%)

Query: 47   KWMDVIASQG-SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHLRG 104
            +W+   A QG  +L ++DLS + +   G   +     L SL     + Q++   L  L  
Sbjct: 1526 QWVGQAAFQGMVALTTLDLSDTQLLALGNASVAHLPKLTSLKLPTTLRQLASAALLDLPQ 1585

Query: 105  LSNLTSLSFRRNNAITAQGMKAFA--GLINLVKLD-------LERCTRIHGGLVNLKGLM 155
            L+ L          ++A  ++  A   L NL KLD       LE  T + G   N+ G+ 
Sbjct: 1586 LATLD---------LSATQVQQLASGALSNLAKLDSLIVSPSLE--TLVPGCFTNMTGVT 1634

Query: 156  KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
             L+    +        + + L+GL  L+++ +S S V   G     G   L+ ++L    
Sbjct: 1635 SLDLAGTQLAQL----EAQVLTGLPALETINLSVSAVRTLGPLAFAGPTSLSAVDLSNTM 1690

Query: 216  VTAACLDSLS--------ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
            + A   ++ S        A+ SL    +    L+  G   F  +  L  ++L   +IT  
Sbjct: 1691 IEAWTTNNASQGPFSKSTAIVSLSSAGMVLKTLTPHG---FDGLSHLSAMDLSAADITSI 1747

Query: 268  CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
              +   GL+N+ +L L+   +   G    TGL +L  L+LS+  + +      +GLT L+
Sbjct: 1748 PALAFAGLSNVTALLLNVSRLTQLGSQGFTGLNHLLTLDLSNAPLATLPASGFAGLTTLQ 1807

Query: 328  SINLS-----------FTGIS------DGSLRKLA--------GLSSLKSLNLDARQITD 362
            ++N+S           F G++      D S  KLA         +S L+ L L   QIT 
Sbjct: 1808 TLNMSGAHVTALPADAFQGLNVQLKDLDLSGNKLARLEAAAFKAVSGLQRLYLSGNQITQ 1867

Query: 363  TGLAALTSLTGLTHLDL 379
                AL  L+ L HLDL
Sbjct: 1868 VDAQALGGLSTLIHLDL 1884



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 147/351 (41%), Gaps = 21/351 (5%)

Query: 83   LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ER 140
            L+SLD     ++     E L GL+N T L       +T+ G  A A    L K+DL  + 
Sbjct: 1252 LRSLDLRHT-KVKALPTEALSGLTNFTQLQLAPAQ-LTSWGSNAIAQCPALTKVDLAGQA 1309

Query: 141  CTRIHG-GLVNLKGLMKLE-SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
             TRI      NL  ++ ++ S N+     +T  +     G   + SLQ+  + +T+    
Sbjct: 1310 LTRIPASAFANLSHVVTIDLSDNL----VLTTIEAGAFVGTKQVTSLQLVHTPLTNLTNG 1365

Query: 199  YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
                L   TL +L    +T    D++S L +L  L L    L+    + F  +  L  ++
Sbjct: 1366 SFTTLGVATL-DLSDAKLTQLPGDAVSQLPALTSLQLPST-LNVLDSDAFHALPKLVTVD 1423

Query: 259  LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
            L    ++       + L  L+S+ L    +     +  + +  L  L LS   + S    
Sbjct: 1424 LRPTSVSHLPTGAFRDLPALQSIQLRGQQLTALDSMVWSAVPRLTALNLSQQALVSVAPA 1483

Query: 319  HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
               GL +L  +NLS +G+     +   GLS + SL+L    +   G AA   +  LT LD
Sbjct: 1484 PFVGLASLTQLNLSHSGLIHLPDQAFEGLSHVTSLDLSGNALQWVGQAAFQGMVALTTLD 1543

Query: 379  LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 429
            L   ++   G A + +   L SL++            ++ L+S  LL+L Q
Sbjct: 1544 LSDTQLLALGNASVAHLPKLTSLKLP---------TTLRQLASAALLDLPQ 1585



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 164/397 (41%), Gaps = 40/397 (10%)

Query: 104  GLSNLTSLSFRRNNAITAQGMKAFAGL--INLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
            GLS L SLS   N AIT   +  F+GL  + +++LD      I G +V    L  L  L+
Sbjct: 817  GLSALQSLSLA-NMAITKLPLGVFSGLNALQVLRLDGTGVQEI-GAMV----LAPLSQLS 870

Query: 162  IKWCNC--ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP---- 215
              W N   +T    K L+   +L  + +S +++        + L  L  +NL+       
Sbjct: 871  TLWLNSSQLTTITTKWLASKPHLMQVDLSHTQLQKVPTFAFEDLPALEAINLDNTAALTT 930

Query: 216  VTAACLDSLSALGSLFY---------------------LNLNRCQLSDDGCEKFSKIGSL 254
            V  +   +L  L SL                       L ++  +L+    E F+    L
Sbjct: 931  VEGSAFANLPRLQSLVVSGGSLETWASNALVDCPSLTTLTISHQRLAALPTEAFAGASGL 990

Query: 255  KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQV 312
            + L+L +N I+D       GL NL  L+++   I   +EG     GL  ++ L+L+ T  
Sbjct: 991  QALDLSYNNISDIGKNAFVGLNNLTQLHIEGNPIAVLEEG--AFAGLRRVQALDLAATAF 1048

Query: 313  GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
                    + ++ L  + L    ++      LA L  L S++    +++     +L  L 
Sbjct: 1049 TILPTNVFANMSALGQVTLP-ASLATLQSNALAHLPMLASVDFSHTKLSALPEYSLVDLP 1107

Query: 373  GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
             LT + L   R+T   A  L +   L SL++    LT      +   + L  LNLS N  
Sbjct: 1108 RLTTVALPPNRLTAVAANALSDCPGLLSLDLSNQQLTTLETNFLIGATHLQALNLSHNSK 1167

Query: 433  LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
            L     E  +GLT L +L+++   +TS  L   ++ R
Sbjct: 1168 LEAVQSEAFAGLTRLTTLDLTGVVLTSLALHAFSYLR 1204



 Score = 45.4 bits (106), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 118/485 (24%), Positives = 200/485 (41%), Gaps = 68/485 (14%)

Query: 2    LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYP-----GVNDKWMDVIASQG 56
            LP  ++    N L +   L  V     +  AL +  L   P      +    +  +A+  
Sbjct: 1067 LPASLATLQSNALAHLPMLASVDFSHTKLSALPEYSLVDLPRLTTVALPPNRLTAVAANA 1126

Query: 57   SS----LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
             S    LLS+DLS   +T              +L+ NF I           G ++L +L+
Sbjct: 1127 LSDCPGLLSLDLSNQQLT--------------TLETNFLI-----------GATHLQALN 1161

Query: 113  FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
               N+ + A   +AFAGL  L  LDL         L +    +++ +L++     + D  
Sbjct: 1162 LSHNSKLEAVQSEAFAGLTRLTTLDLTGVVLTSLAL-HAFSYLRITNLDLS-TTQLADLP 1219

Query: 173  MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
             + L  L  L ++Q+  +  T +  ++ + L  L  L+L    V A   ++LS L +   
Sbjct: 1220 TEALWNLPELAAVQLPATLTTLNKRSFYQ-LPALRSLDLRHTKVKALPTEALSGLTNFTQ 1278

Query: 233  LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
            L L   QL+  G    ++  +L  ++L    +T         L+++ +++L       + 
Sbjct: 1279 LQLAPAQLTSWGSNAIAQCPALTKVDLAGQALTRIPASAFANLSHVVTIDL------SDN 1332

Query: 293  LVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTGI-----SDGSLRKLAG 346
            LV    L  ++      T QV S  L H + LTNL + + +  G+     SD  L +L G
Sbjct: 1333 LV----LTTIEAGAFVGTKQVTSLQLVH-TPLTNLTNGSFTTLGVATLDLSDAKLTQLPG 1387

Query: 347  -----LSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
                 L +L SL L +   + D+   A  +L  L  +DL    ++       R+   L+S
Sbjct: 1388 DAVSQLPALTSLQLPSTLNVLDSD--AFHALPKLVTVDLRPTSVSHLPTGAFRDLPALQS 1445

Query: 401  LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
            +++ G  LT         +  LT LNLSQ   ++      + GL  L  LN+S+S     
Sbjct: 1446 IQLRGQQLTALDSMVWSAVPRLTALNLSQQALVSVAPAPFV-GLASLTQLNLSHS----- 1499

Query: 461  GLRHL 465
            GL HL
Sbjct: 1500 GLIHL 1504


>gi|255524523|ref|ZP_05391478.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
 gi|296186022|ref|ZP_06854427.1| leucine Rich repeat protein [Clostridium carboxidivorans P7]
 gi|255511819|gb|EET88104.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
 gi|296049290|gb|EFG88719.1| leucine Rich repeat protein [Clostridium carboxidivorans P7]
          Length = 683

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 96/321 (29%), Positives = 160/321 (49%), Gaps = 45/321 (14%)

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
           Q +     L NL  LDL + ++I   +  LK L KL++L     N    SD+ PL  LT+
Sbjct: 371 QDISGIENLTNLQFLDLSQ-SKI-SDISELKNLTKLQTL---LLNDNEISDISPLQNLTD 425

Query: 182 LKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           LK L +  ++++D + + YL  L +L L N     ++      L  L +L  L L++ Q+
Sbjct: 426 LKQLDLEENRISDITPLQYLSDLNELYLKNNRITNISK-----LEWLTNLKILYLSQNQI 480

Query: 241 SD-DGCEKFSKIGSLKVLNL-------GFNEITDECL--------------VHLKGLTNL 278
           SD    +++    + K  N+             DE L              +++  + N+
Sbjct: 481 SDYSPVKRYYDNLTDKDFNMTNSTDSKDIVTFKDENLEKAVRDKINKETGDIYITDVKNI 540

Query: 279 ESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
            SLN     I D  G+ NLT L   + L+L + QV  S +  LS LTNLE++NLS+   S
Sbjct: 541 VSLNASHKNIKDISGIENLTSL---QTLDLGNNQV--SDISVLSSLTNLETLNLSYNEFS 595

Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
           D  + KL GLS L++LNL++ +I D  ++A+ +L  L  L+L   +I++     L+   N
Sbjct: 596 D--ISKLKGLSKLETLNLNSNEIGD--ISAIQTLNNLKSLNLSNCKISNINP--LKGLNN 649

Query: 398 LRSLEICGGGLTDAGVKHIKD 418
           L++L +    ++D+  + +KD
Sbjct: 650 LKTLWLNNNEMSDSDKEALKD 670



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 102/396 (25%), Positives = 170/396 (42%), Gaps = 67/396 (16%)

Query: 97  GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI-------------NLV---KLDLER 140
             +  LRGL+NL  L   +N  +     +++   I             N+V    ++LE+
Sbjct: 280 NNINALRGLTNLNLLYLGQNEILDYSPTRSYYAKILNKDFDLIDSNDDNIVTFKDINLEK 339

Query: 141 CTRIH----GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
             R       G +    + K+ SL     N     D+  +  LTNL+ L +S SK++D  
Sbjct: 340 AVRSEINKPSGDIYKSDVEKIVSLQPYHENI---QDISGIENLTNLQFLDLSQSKISD-- 394

Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
           I+ LK L KL  L L    ++   +  L  L  L  L+L   ++SD        +  L  
Sbjct: 395 ISELKNLTKLQTLLLNDNEISD--ISPLQNLTDLKQLDLEENRISD--ITPLQYLSDLNE 450

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV------------NLTGLCNLKC 304
           L L  N IT+  +  L+ LTNL+ L L    I D   V            N+T   + K 
Sbjct: 451 LYLKNNRITN--ISKLEWLTNLKILYLSQNQISDYSPVKRYYDNLTDKDFNMTNSTDSKD 508

Query: 305 L----------ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
           +           + D     +G  +++ + N+ S+N S   I D  +  +  L+SL++L+
Sbjct: 509 IVTFKDENLEKAVRDKINKETGDIYITDVKNIVSLNASHKNIKD--ISGIENLTSLQTLD 566

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
           L   Q++D  ++ L+SLT L  L+L     +D     +   K L  LE       + G  
Sbjct: 567 LGNNQVSD--ISVLSSLTNLETLNLSYNEFSD-----ISKLKGLSKLETLNLNSNEIG-- 617

Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
              D+S++  LN  ++ NL++  +  I+ L GL +L
Sbjct: 618 ---DISAIQTLNNLKSLNLSNCKISNINPLKGLNNL 650


>gi|297171918|gb|ADI22905.1| hypothetical protein [uncultured Rhizobium sp. HF0500_35F13]
          Length = 307

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 2/165 (1%)

Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
           A + G++ +T+       +T   L+ L  LG++ YL+L+   + DDG    +K+  L+VL
Sbjct: 41  AQVSGIRSVTV-RFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVL 99

Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
            L   EITD     L  L++L  L      +GD  +  L     L  L+++  QV  SGL
Sbjct: 100 VLSGTEITDAGFSQLSNLSDLNQLTASEL-MGDGTMAALASATKLNFLDMTGGQVTDSGL 158

Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
            HLSG+ NL+ + LS T I+D  L  L  ++ L+ L L+  +ITD
Sbjct: 159 SHLSGMKNLKRLTLSRTAITDKGLEHLQSITVLQDLQLNNTKITD 203



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 2/157 (1%)

Query: 157 LESLNIKWCN-CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
           + S+ +++ N  +T  D++PL  L  +  L +S + V D G+ ++  L+ L +L L G  
Sbjct: 46  IRSVTVRFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTE 105

Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
           +T A    LS L  L  L  +   + D      +    L  L++   ++TD  L HL G+
Sbjct: 106 ITDAGFSQLSNLSDLNQLTASEL-MGDGTMAALASATKLNFLDMTGGQVTDSGLSHLSGM 164

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
            NL+ L L    I D+GL +L  +  L+ L+L++T++
Sbjct: 165 KNLKRLTLSRTAITDKGLEHLQSITVLQDLQLNNTKI 201



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 78/140 (55%), Gaps = 8/140 (5%)

Query: 299 LCNLKCLELSDTQVGSSGL---RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           L  +  L+LSDT VG  G+     L G   L+ + LS T I+D    +L+ LS L  L  
Sbjct: 69  LGTVHYLDLSDTSVGDDGMVHINKLEG---LQVLVLSGTEITDAGFSQLSNLSDLNQLTA 125

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
            +  + D  +AAL S T L  LD+ G ++TDSG ++L   KNL+ L +    +TD G++H
Sbjct: 126 -SELMGDGTMAALASATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRTAITDKGLEH 184

Query: 416 IKDLSSLTLLNLSQNCNLTD 435
           ++ ++ L  L L+ N  +TD
Sbjct: 185 LQSITVLQDLQLN-NTKITD 203



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 89/164 (54%), Gaps = 3/164 (1%)

Query: 249 SKIGSLKVLNLGF--NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
           +++  ++ + + F  + +T + L  L  L  +  L+L    +GD+G+V++  L  L+ L 
Sbjct: 41  AQVSGIRSVTVRFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLV 100

Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
           LS T++  +G   LS L++L  +  S   + DG++  LA  + L  L++   Q+TD+GL+
Sbjct: 101 LSGTEITDAGFSQLSNLSDLNQLTASEL-MGDGTMAALASATKLNFLDMTGGQVTDSGLS 159

Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
            L+ +  L  L L    ITD G  +L++   L+ L++    +TD
Sbjct: 160 HLSGMKNLKRLTLSRTAITDKGLEHLQSITVLQDLQLNNTKITD 203



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 26/161 (16%)

Query: 323 LTNLESINLSFT--GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
           ++ + S+ + FT   ++   L  L  L ++  L+L    + D G+  +  L GL  L L 
Sbjct: 43  VSGIRSVTVRFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLS 102

Query: 381 GARITDSGAAYLRNFKNLRS-----------------------LEICGGGLTDAGVKHIK 417
           G  ITD+G + L N  +L                         L++ GG +TD+G+ H+ 
Sbjct: 103 GTEITDAGFSQLSNLSDLNQLTASELMGDGTMAALASATKLNFLDMTGGQVTDSGLSHLS 162

Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
            + +L  L LS+   +TDK LE +  +T L  L ++N++IT
Sbjct: 163 GMKNLKRLTLSRTA-ITDKGLEHLQSITVLQDLQLNNTKIT 202



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 6/134 (4%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           +DLS + V D G++H+     LQ L  +   +I+D G   L  LS+L  L+      +  
Sbjct: 75  LDLSDTSVGDDGMVHINKLEGLQVLVLS-GTEITDAGFSQLSNLSDLNQLTASE---LMG 130

Query: 122 QG-MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
            G M A A    L  LD+        GL +L G+  L+ L +     ITD  ++ L  +T
Sbjct: 131 DGTMAALASATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRT-AITDKGLEHLQSIT 189

Query: 181 NLKSLQISCSKVTD 194
            L+ LQ++ +K+TD
Sbjct: 190 VLQDLQLNNTKITD 203



 Score = 41.6 bits (96), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 2/102 (1%)

Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
           L  L  L  + +LDL    + D G  ++   + L+ L + G  +TDAG   + +LS L  
Sbjct: 63  LEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTEITDAGFSQLSNLSDLNQ 122

Query: 425 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
           L  S+   + D T+  ++  T L  L+++  ++T +GL HL+
Sbjct: 123 LTASE--LMGDGTMAALASATKLNFLDMTGGQVTDSGLSHLS 162



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 3/75 (4%)

Query: 46  DKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
           D  M  +AS  + L  +D++G  VTDSGL HL    NL+ L  +    I+D GLEHL+ +
Sbjct: 131 DGTMAALAS-ATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRT-AITDKGLEHLQSI 188

Query: 106 SNLTSLSFRRNNAIT 120
           + L  L    N  IT
Sbjct: 189 TVLQDLQL-NNTKIT 202


>gi|302754944|ref|XP_002960896.1| hypothetical protein SELMODRAFT_75506 [Selaginella moellendorffii]
 gi|300171835|gb|EFJ38435.1| hypothetical protein SELMODRAFT_75506 [Selaginella moellendorffii]
          Length = 637

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 135/456 (29%), Positives = 202/456 (44%), Gaps = 89/456 (19%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLS--NLTSLSFRRNNAITAQGMKAFA---------- 128
           + ++SLD + CI+I+D  L  +  L+   L SL   R    T  G+ A A          
Sbjct: 65  TGIESLDLSSCIKITDEDLALVGELAGTRLRSLGLARMGGFTVAGIVALARDCSALVELD 124

Query: 129 ----------------GLINLVKLDLERCTRIH-GGLVNLK-GLMKLESLNIKWCNCITD 170
                            L NL KLDL  C  I   GL  L  G  KL+ + +K C  I+D
Sbjct: 125 LRCCNSLGDLELAAVCQLGNLRKLDLTGCYMISDAGLGCLAAGCKKLQVVVLKGCVGISD 184

Query: 171 SDMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALG 228
           + +  L S    L ++ +S +++TD G+  L  L  L +LNL  C  V  A L   S   
Sbjct: 185 AGLCFLASNCKELTTIDVSYTEITDDGVRCLSNLPSLRVLNLAACSNVGDAGLTRTST-- 242

Query: 229 SLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-------NEITDECLVHLKGLTNLES 280
           SL  L+L+ C+ +++ G    SK  SL+ L LGF       ++IT + L  +  LT +++
Sbjct: 243 SLLELDLSCCRSVTNVGISFLSK-RSLQFLKLGFCSPVKKRSQITGQLLEAVGKLTQIQT 301

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSD---------TQVGSSGLRHLSGLTNLESINL 331
           L L  C I  +GL    G C   CL+LSD         T  G + + H  G  NL  ++L
Sbjct: 302 LKLAGCEIAGDGL-RFVGSC---CLQLSDLSLSKCRGVTDSGMASIFH--GCKNLRKLDL 355

Query: 332 S----FTGISDGSL-RKLAGLSSLK-----------------------SLNLDARQITDT 363
           +     T I+  ++ R  AGL SLK                        L++    I D 
Sbjct: 356 TCCLDLTEITACNIARSSAGLVSLKIEACRILTENNIPLLMERCSCLEELDVTDCNIDDA 415

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEIC-GGGLTDAGVKHIKD-LS 420
           GL  +     L  L L   +++D+G  ++ RN  +L  L++   G + DAGV  I     
Sbjct: 416 GLECIAKCKFLKTLKLGFCKVSDNGIEHVGRNCSDLIELDLYRSGNVGDAGVASIAAGCR 475

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
            L +LNLS   N+TD ++  IS L+ L  L +   +
Sbjct: 476 KLRILNLSYCPNITDASIVSISQLSHLQQLEIRGCK 511



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 104/416 (25%), Positives = 193/416 (46%), Gaps = 52/416 (12%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
           LQ + L    G++D  +  +AS    L ++D+S +++TD G+  L +  +L+ L+   C 
Sbjct: 171 LQVVVLKGCVGISDAGLCFLASNCKELTTIDVSYTEITDDGVRCLSNLPSLRVLNLAACS 230

Query: 93  QISDGGLEH------------LRGLSNL-------TSLSF---------RRNNAITAQGM 124
            + D GL               R ++N+        SL F         ++ + IT Q +
Sbjct: 231 NVGDAGLTRTSTSLLELDLSCCRSVTNVGISFLSKRSLQFLKLGFCSPVKKRSQITGQLL 290

Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKG--LMKLESLNIKWCNCITDSDMKPL-SGLTN 181
           +A   L  +  L L  C  I G  +   G   ++L  L++  C  +TDS M  +  G  N
Sbjct: 291 EAVGKLTQIQTLKLAGC-EIAGDGLRFVGSCCLQLSDLSLSKCRGVTDSGMASIFHGCKN 349

Query: 182 LKSLQISC----SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL----GSLFYL 233
           L+ L ++C    +++T   IA  +    L  L +E C +     +++  L      L  L
Sbjct: 350 LRKLDLTCCLDLTEITACNIA--RSSAGLVSLKIEACRILTE--NNIPLLMERCSCLEEL 405

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCG-IGDE 291
           ++  C + D G E  +K   LK L LGF +++D  + H+ +  ++L  L+L   G +GD 
Sbjct: 406 DVTDCNIDDAGLECIAKCKFLKTLKLGFCKVSDNGIEHVGRNCSDLIELDLYRSGNVGDA 465

Query: 292 GLVNLTGLC-NLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLS 348
           G+ ++   C  L+ L LS    +  + +  +S L++L+ + +    G+  G  +KL    
Sbjct: 466 GVASIAAGCRKLRILNLSYCPNITDASIVSISQLSHLQQLEIRGCKGV--GLEKKLPEFK 523

Query: 349 SLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           +L  L+L    I D G+ ++      L  L+L   RI+++    L N + L+++++
Sbjct: 524 NLVELDLKHCGIGDRGMTSIVHCFPNLQQLNLSYCRISNAALVMLGNLRCLQNVKL 579



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 115/246 (46%), Gaps = 38/246 (15%)

Query: 245 CEKFSKIG--SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
           C++F   G  S K + L  +E+    L    G+   ESL+L SC  I DE L  L G   
Sbjct: 35  CKRFYAAGAESQKTMRLFNSELLPRALARHTGI---ESLDLSSCIKITDEDLA-LVG--- 87

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLS-------------FTGISDGSLRKLAGLS 348
               EL+ T++ S GL  + G T    + L+                + D  L  +  L 
Sbjct: 88  ----ELAGTRLRSLGLARMGGFTVAGIVALARDCSALVELDLRCCNSLGDLELAAVCQLG 143

Query: 349 SLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR----ITDSGAAYL-RNFKNLRSLE 402
           +L+ L+L     I+D GL  L +  G   L +   +    I+D+G  +L  N K L +++
Sbjct: 144 NLRKLDLTGCYMISDAGLGCLAA--GCKKLQVVVLKGCVGISDAGLCFLASNCKELTTID 201

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAG 461
           +    +TD GV+ + +L SL +LNL+   N+ D  L   S  T L+ L++S  R +T+ G
Sbjct: 202 VSYTEITDDGVRCLSNLPSLRVLNLAACSNVGDAGLTRTS--TSLLELDLSCCRSVTNVG 259

Query: 462 LRHLNH 467
           +  L+ 
Sbjct: 260 ISFLSK 265


>gi|313485052|gb|ADR53000.1| InlA [Listeria monocytogenes]
          Length = 771

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLT+L+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|313485054|gb|ADR53001.1| InlA [Listeria monocytogenes]
          Length = 771

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLT+L+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|219821318|gb|ACL37790.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 40  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 94  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKV 368

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  L+NL 
Sbjct: 32  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLTNL+   LSF G   
Sbjct: 88  GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 139

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 140 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 195

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 196 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 251 NISPLAGLTALTN 263


>gi|313485044|gb|ADR52997.1| InlA [Listeria monocytogenes]
          Length = 771

 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|71912408|gb|AAZ53236.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 123/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|47092503|ref|ZP_00230292.1| internalin A [Listeria monocytogenes str. 4b H7858]
 gi|417314487|ref|ZP_12101186.1| internalin A [Listeria monocytogenes J1816]
 gi|47019095|gb|EAL09839.1| internalin A [Listeria monocytogenes str. 4b H7858]
 gi|130774783|gb|ABO32406.1| InlA [Listeria monocytogenes]
 gi|130774787|gb|ABO32408.1| InlA [Listeria monocytogenes]
 gi|167861878|gb|ACA05638.1| InlA [Listeria monocytogenes]
 gi|167861926|gb|ACA05662.1| InlA [Listeria monocytogenes]
 gi|194239406|emb|CAQ76843.1| internalin A [Listeria monocytogenes]
 gi|223006800|gb|ACM69357.1| internalin A [Listeria monocytogenes]
 gi|223006808|gb|ACM69361.1| internalin A [Listeria monocytogenes]
 gi|294358399|gb|ADE73852.1| InlA [Listeria monocytogenes]
 gi|298359958|gb|ADI77558.1| internalin A [Listeria monocytogenes]
 gi|298359988|gb|ADI77573.1| internalin A [Listeria monocytogenes]
 gi|298360010|gb|ADI77584.1| internalin A [Listeria monocytogenes]
 gi|298360208|gb|ADI77683.1| internalin A [Listeria monocytogenes]
 gi|298360370|gb|ADI77764.1| internalin A [Listeria monocytogenes]
 gi|298360402|gb|ADI77780.1| internalin A [Listeria monocytogenes]
 gi|298360472|gb|ADI77815.1| internalin A [Listeria monocytogenes]
 gi|298360544|gb|ADI77851.1| internalin A [Listeria monocytogenes]
 gi|298360592|gb|ADI77875.1| internalin A [Listeria monocytogenes]
 gi|328467733|gb|EGF38785.1| internalin A [Listeria monocytogenes J1816]
 gi|443428820|gb|AGC92209.1| truncated internalin A [Listeria monocytogenes]
 gi|443428844|gb|AGC92221.1| truncated internalin A [Listeria monocytogenes]
 gi|443428846|gb|AGC92222.1| truncated internalin A [Listeria monocytogenes]
 gi|443428850|gb|AGC92224.1| truncated internalin A [Listeria monocytogenes]
 gi|443428854|gb|AGC92226.1| truncated internalin A [Listeria monocytogenes]
 gi|443428856|gb|AGC92227.1| truncated internalin A [Listeria monocytogenes]
          Length = 797

 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|85679230|gb|ABC72031.1| InlA [Listeria monocytogenes]
          Length = 794

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 99  LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 152

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 153 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 204

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 205 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 257

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 258 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 311

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 312 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 369

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 370 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKVNV 427

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 428 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 458



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 91  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 143

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 144 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 198

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 199 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 256

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 257 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 311

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 312 LAGLTALTN 320


>gi|219821279|gb|ACL37764.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 42  LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 95

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 96  IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 147

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 148 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 200

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 201 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 254

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 255 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 312

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 313 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKVNV 370

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 371 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 34  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 86

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 87  TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 141

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 142 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 199

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 254

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 255 LAGLTALTN 263


>gi|345310405|ref|XP_001520129.2| PREDICTED: insulin-like growth factor-binding protein complex acid
           labile subunit-like [Ornithorhynchus anatinus]
          Length = 604

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 155/359 (43%), Gaps = 5/359 (1%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
            NL SLS   N     +G  AFAGL  L +L+L   T         +GL  L  L +   
Sbjct: 143 PNLASLSLANNRLGQLEG-AAFAGLCQLGELNLGWNTLAVLPDAVFRGLPHLRELVLA-G 200

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N +        +GL  L+ L +S + +         GL +L  L L G  ++A    +  
Sbjct: 201 NRLAYLQPPLFAGLGELQELDLSTNSLRSVKAHVFAGLPRLQKLFLRGNQLSAVAPRAFL 260

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            L +L +L+L+  +L+    + F  + SL VL L  N IT       + L +LE L L  
Sbjct: 261 GLRALRWLDLSHNRLAVLFEDTFLGLPSLHVLRLSANVITSLRPQAFRDLPHLEELQLAH 320

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
             +G        GL  L+ L L+D  +   G    +GL  L  +NLS   ++    +   
Sbjct: 321 NRLGALAAGAFEGLARLEVLALNDNHIREIGPGAFAGLARLAVVNLSGNCLAALPAQTFR 380

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
           GL++L SL+L+   +      A   L  L  L L    IT      L +   L  L++ G
Sbjct: 381 GLAALHSLHLERACLGRVPAGAFAGLVALRRLSLGHNGITAIEEQGLHDLTGLLELDLTG 440

Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI--TSAGL 462
             LT    +  +DL+ L  L L+ N  L D   E +  L  L  L+++++R+   +AGL
Sbjct: 441 NRLTHLPTRAFRDLARLEYLLLAGN-QLADLAPEALLPLRRLSWLDLAHNRLGAVAAGL 498



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 144/368 (39%), Gaps = 37/368 (10%)

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE----RCTRIHGGLVNLKGLMKL 157
            RGL +L  L    N     Q    FAGL  L +LDL     R  + H       GL +L
Sbjct: 187 FRGLPHLRELVLAGNRLAYLQ-PPLFAGLGELQELDLSTNSLRSVKAH----VFAGLPRL 241

Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
           + L ++  N ++    +   GL  L+ L +S +++         GL  L +L L    +T
Sbjct: 242 QKLFLR-GNQLSAVAPRAFLGLRALRWLDLSHNRLAVLFEDTFLGLPSLHVLRLSANVIT 300

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
           +    +   L  L  L L   +L       F  +  L+VL L  N I +       GL  
Sbjct: 301 SLRPQAFRDLPHLEELQLAHNRLGALAAGAFEGLARLEVLALNDNHIREIGPGAFAGLAR 360

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           L              +VNL+G     CL     Q          GL  L S++L    + 
Sbjct: 361 L-------------AVVNLSG----NCLAALPAQT-------FRGLAALHSLHLERACLG 396

Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
                  AGL +L+ L+L    IT      L  LTGL  LDL G R+T       R+   
Sbjct: 397 RVPAGAFAGLVALRRLSLGHNGITAIEEQGLHDLTGLLELDLTGNRLTHLPTRAFRDLAR 456

Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-- 455
           L  L + G  L D   + +  L  L+ L+L+ N  L      L + L  L  L++ N+  
Sbjct: 457 LEYLLLAGNQLADLAPEALLPLRRLSWLDLAHN-RLGAVAAGLFAPLASLRFLSLRNNSL 515

Query: 456 RITSAGLR 463
           R  + GL+
Sbjct: 516 RAFAPGLQ 523



 Score = 39.7 bits (91), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 111/321 (34%), Gaps = 34/321 (10%)

Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
           C C  D D          + L + CS    S        Q   L  L+G  +TA    + 
Sbjct: 41  CACSYDDDYG--------EELSVFCSARNLSSPPEGVPCQARALW-LDGNNLTALPAAAF 91

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
             L  L +LNL   +L     + F  +  L  L+L  N++            NL SL+L 
Sbjct: 92  GNLSGLDFLNLQGSRLGQLEAQAFRGLARLAHLHLERNQLRGLAPGTFLHTPNLASLSLA 151

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGS------SGLRHL------------------ 320
           +  +G        GLC L  L L    +         GL HL                  
Sbjct: 152 NNRLGQLEGAAFAGLCQLGELNLGWNTLAVLPDAVFRGLPHLRELVLAGNRLAYLQPPLF 211

Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
           +GL  L+ ++LS   +        AGL  L+ L L   Q++     A   L  L  LDL 
Sbjct: 212 AGLGELQELDLSTNSLRSVKAHVFAGLPRLQKLFLRGNQLSAVAPRAFLGLRALRWLDLS 271

Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
             R+            +L  L +    +T    +  +DL  L  L L+ N  L       
Sbjct: 272 HNRLAVLFEDTFLGLPSLHVLRLSANVITSLRPQAFRDLPHLEELQLAHN-RLGALAAGA 330

Query: 441 ISGLTGLVSLNVSNSRITSAG 461
             GL  L  L ++++ I   G
Sbjct: 331 FEGLARLEVLALNDNHIREIG 351


>gi|340728038|ref|XP_003402339.1| PREDICTED: f-box/LRR-repeat protein 14-like [Bombus terrestris]
          Length = 485

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 170/321 (52%), Gaps = 44/321 (13%)

Query: 57  SSLLSVDLSG-SDVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLS 112
            +L +++LSG  ++TD GLI+   ++ + L  L+ + C Q+SD  L  + + L NL  L 
Sbjct: 181 PNLEALNLSGCYNITDVGLINAFCQEYATLIELNLSLCKQVSDISLGRIVQYLKNLEHLE 240

Query: 113 FRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL--------MKLESLNI 162
                 IT  G+   A  L  L +LDL  C ++   G+ +L G+        + LE L++
Sbjct: 241 LGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAGGNLALEHLSL 300

Query: 163 KWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
           + C  ++D  ++ +S GLT LKS+ +S C  +TDSG+ +L  +  L  LNL  C      
Sbjct: 301 QDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLRSC------ 354

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNL 278
            D++S +G  +        L++ G    S+I SL V    F ++I D+ LVH+ +GL NL
Sbjct: 355 -DNISDIGMAY--------LAEGG----SRISSLDV---SFCDKIGDQALVHISQGLFNL 398

Query: 279 ESLNLDSCGIGDEGLVNLTG-LCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFT 334
           + L+L +C I DEG+  +   L +L+ L +   +++   GL  ++  + +L+ I+L   T
Sbjct: 399 KLLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCT 458

Query: 335 GISDGSLRKLAGLSSLKSLNL 355
            IS   L ++  L  L +LNL
Sbjct: 459 RISTNGLERIMKLPQLSTLNL 479



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 94/271 (34%), Positives = 140/271 (51%), Gaps = 32/271 (11%)

Query: 200 LKGLQKLTLLNLEGCP-------VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSK- 250
           LKG+  L  LNL GC        + A C +      +L  LNL+ C Q+SD    +  + 
Sbjct: 177 LKGVPNLEALNLSGCYNITDVGLINAFCQE----YATLIELNLSLCKQVSDISLGRIVQY 232

Query: 251 IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSCG-IGDEGLVNLTGL-------- 299
           + +L+ L LG    IT+  L+ +   L  L+ L+L SC  + D G+ +L G+        
Sbjct: 233 LKNLEHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAGGN 292

Query: 300 CNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD 356
             L+ L L D Q +    LRH+S GLT L+SINLSF   I+D  L+ LA +SSL+ LNL 
Sbjct: 293 LALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLR 352

Query: 357 A-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAG 412
           +   I+D G+A L    + ++ LD+ F  +I D    ++ +   NL+ L +    ++D G
Sbjct: 353 SCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEG 412

Query: 413 V-KHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
           + K  K L  L  LN+ Q   LTDK L  I+
Sbjct: 413 ICKIAKTLHDLETLNIGQCSRLTDKGLYTIA 443



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 120/247 (48%), Gaps = 39/247 (15%)

Query: 28  FRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD---VTDSGLIHLK-DCSN 82
            R C  + DL +    GVN +      S G +L    LS  D   ++D  L H+    + 
Sbjct: 267 LRSCWQVSDLGIAHLAGVNRE------SAGGNLALEHLSLQDCQRLSDEALRHVSIGLTT 320

Query: 83  LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
           L+S++ +FC+ I+D GL+HL  +S+L  L+ R  + I+  GM   A              
Sbjct: 321 LKSINLSFCVCITDSGLKHLAKMSSLRELNLRSCDNISDIGMAYLA-------------- 366

Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL- 200
                    +G  ++ SL++ +C+ I D  +  +S GL NLK L +S  +++D GI  + 
Sbjct: 367 ---------EGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGICKIA 417

Query: 201 KGLQKLTLLNLEGCP-VTAACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVL 257
           K L  L  LN+  C  +T   L +++ ++  L  ++L  C ++S +G E+  K+  L  L
Sbjct: 418 KTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTL 477

Query: 258 NLGFNEI 264
           NLG   +
Sbjct: 478 NLGLWHV 484



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 103/216 (47%), Gaps = 46/216 (21%)

Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLC---------NLK-CLELSDTQVGSSGLRHL 320
           LKG+ NLE+LNL  C  I D GL+N    C         NL  C ++SD  +G    R +
Sbjct: 177 LKGVPNLEALNLSGCYNITDVGLIN--AFCQEYATLIELNLSLCKQVSDISLG----RIV 230

Query: 321 SGLTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT----- 372
             L NLE + L     I++G L  +A  L  LK L+L +  Q++D G+A L  +      
Sbjct: 231 QYLKNLEHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAG 290

Query: 373 ---GLTHLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSSLT 423
               L HL L    R++D    ++      L+S+     +C   +TD+G+KH+  +SSL 
Sbjct: 291 GNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVC---ITDSGLKHLAKMSSLR 347

Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            LNL    N++D          G+  L    SRI+S
Sbjct: 348 ELNLRSCDNISD---------IGMAYLAEGGSRISS 374


>gi|219821351|gb|ACL37812.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 40  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 94  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVKYKV 368

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 32  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 88  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 251

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 252 ISPLAGLTALTN 263


>gi|219821360|gb|ACL37818.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 40  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 94  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKV 368

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  L+NL 
Sbjct: 32  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 88  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 251

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 252 ISPLAGLTALTN 263


>gi|158299381|ref|XP_319486.4| AGAP010289-PA [Anopheles gambiae str. PEST]
 gi|157014337|gb|EAA14603.5| AGAP010289-PA [Anopheles gambiae str. PEST]
          Length = 381

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 84/245 (34%), Positives = 125/245 (51%), Gaps = 26/245 (10%)

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIG----------SLKVLNLGF-NEITDECLV 270
            S +  GSL    + R Q+   GC   + +           +LKVLNL    ++TD  L 
Sbjct: 123 PSPTLFGSLVKRGIKRVQV---GCYNITDMAIGHAFAADFPNLKVLNLSLCKQVTDSSLG 179

Query: 271 HL-KGLTNLESLNLDSCG-IGDEGLVNLT--GLCNLKCLELSDTQ-VGSSGLRHLS-GLT 324
            + + L N+E L L  C  I + GL   T  G   L+ L L D Q +    LRH++ GLT
Sbjct: 180 RITQHLKNIEVLELGGCSNITNTGLSKETADGTPALEYLGLQDCQRLSDEALRHIAQGLT 239

Query: 325 NLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLDL-F 380
           +L SINLSF   ++D  L+ LA +S L+ LNL A   I+D G+A LT     ++ LD+ F
Sbjct: 240 SLRSINLSFCVSVTDSGLKHLARMSRLEELNLRACDNISDIGMAYLTEGCNSISTLDVSF 299

Query: 381 GARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTL 438
             ++ D    ++ +    LRSL +    +TD G+  I K L  L  LN+ Q   +TD+ L
Sbjct: 300 CDKVADQAMVHISQGLFQLRSLSLSACQITDEGLSRIAKSLHDLETLNIGQCSRITDRGL 359

Query: 439 ELISG 443
           E+++ 
Sbjct: 360 EIVAA 364



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 126/248 (50%), Gaps = 32/248 (12%)

Query: 62  VDLSGSDVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLR--------GLSN 107
           V +   ++TD  + H    D  NL+ L+ + C Q++D  L    +HL+        G SN
Sbjct: 139 VQVGCYNITDMAIGHAFAADFPNLKVLNLSLCKQVTDSSLGRITQHLKNIEVLELGGCSN 198

Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN--LKGLMKLESLNIKWC 165
           +T+    +    TA G  A      L  L L+ C R+    +    +GL  L S+N+ +C
Sbjct: 199 ITNTGLSKE---TADGTPA------LEYLGLQDCQRLSDEALRHIAQGLTSLRSINLSFC 249

Query: 166 NCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTA--ACL 221
             +TDS +K L+ ++ L+ L + +C  ++D G+AYL +G   ++ L++  C   A  A +
Sbjct: 250 VSVTDSGLKHLARMSRLEELNLRACDNISDIGMAYLTEGCNSISTLDVSFCDKVADQAMV 309

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLGF-NEITDECL-VHLKGLTNL 278
                L  L  L+L+ CQ++D+G  + +K +  L+ LN+G  + ITD  L +    L NL
Sbjct: 310 HISQGLFQLRSLSLSACQITDEGLSRIAKSLHDLETLNIGQCSRITDRGLEIVAAELINL 369

Query: 279 ESLNLDSC 286
            +++L  C
Sbjct: 370 RAIDLYGC 377



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 80/241 (33%), Positives = 126/241 (52%), Gaps = 37/241 (15%)

Query: 179 LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALG--SLFYL 233
             NLK L +S C +VTDS +  + + L+ + +L L GC  +T   L   +A G  +L YL
Sbjct: 159 FPNLKVLNLSLCKQVTDSSLGRITQHLKNIEVLELGGCSNITNTGLSKETADGTPALEYL 218

Query: 234 NLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIG 289
            L  CQ LSD+     ++ + SL+ +NL F   +TD  L HL  ++ LE LNL +C  I 
Sbjct: 219 GLQDCQRLSDEALRHIAQGLTSLRSINLSFCVSVTDSGLKHLARMSRLEELNLRACDNIS 278

Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA-GL 347
           D G+  LT  CN                       ++ ++++SF   ++D ++  ++ GL
Sbjct: 279 DIGMAYLTEGCN-----------------------SISTLDVSFCDKVADQAMVHISQGL 315

Query: 348 SSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEIC 404
             L+SL+L A QITD GL+ +  SL  L  L++   +RITD G   +     NLR++++ 
Sbjct: 316 FQLRSLSLSACQITDEGLSRIAKSLHDLETLNIGQCSRITDRGLEIVAAELINLRAIDLY 375

Query: 405 G 405
           G
Sbjct: 376 G 376



 Score = 41.6 bits (96), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 5/120 (4%)

Query: 29  RDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHL-KDCSNLQSL 86
           R   L++L L     ++D  M  +    +S+ ++D+S  D V D  ++H+ +    L+SL
Sbjct: 262 RMSRLEELNLRACDNISDIGMAYLTEGCNSISTLDVSFCDKVADQAMVHISQGLFQLRSL 321

Query: 87  DFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRI 144
             + C QI+D GL  + + L +L +L+  + + IT +G++  A  LINL  +DL  CTR+
Sbjct: 322 SLSAC-QITDEGLSRIAKSLHDLETLNIGQCSRITDRGLEIVAAELINLRAIDLYGCTRL 380


>gi|150371726|dbj|BAF65678.1| internalin A [Listeria monocytogenes]
 gi|194326151|emb|CAQ77234.1| internalin A [Listeria monocytogenes]
 gi|298360180|gb|ADI77669.1| internalin A [Listeria monocytogenes]
 gi|298360390|gb|ADI77774.1| internalin A [Listeria monocytogenes]
 gi|298360416|gb|ADI77787.1| internalin A [Listeria monocytogenes]
 gi|298360620|gb|ADI77889.1| internalin A [Listeria monocytogenes]
 gi|298360656|gb|ADI77907.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKVNV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 156/355 (43%), Gaps = 95/355 (26%)

Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           A+ MK   G  N+     + DL++ T +    + +K +  LE LN               
Sbjct: 54  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
               NL  +  S +++TD  I  LK L KL              +D L          +N
Sbjct: 99  ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             Q++D      + + +L  L L  N+ITD  +  LK LTNL  L L S  I D  +  L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
           +GL NL+ L   + QV  + L+ L+ LT LE +++S   +SD S+  LA L++L+SL   
Sbjct: 183 SGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT 237

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
             QI+D     +T L  LT+LD                      L + G  L D G   +
Sbjct: 238 NNQISD-----ITPLGILTNLD---------------------ELSLNGNQLKDIGT--L 269

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS----AGLRHLNH 467
             L++LT L+L+ N       L  +SGLT L  L +  ++I++    AGL  L +
Sbjct: 270 ASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 321


>gi|223698610|gb|ACN18980.1| internalin A [Listeria monocytogenes]
 gi|223698616|gb|ACN18984.1| internalin A [Listeria monocytogenes]
 gi|223698631|gb|ACN18994.1| internalin A [Listeria monocytogenes]
 gi|223698637|gb|ACN18998.1| internalin A [Listeria monocytogenes]
 gi|223698640|gb|ACN19000.1| internalin A [Listeria monocytogenes]
 gi|223698649|gb|ACN19006.1| internalin A [Listeria monocytogenes]
 gi|223698652|gb|ACN19008.1| internalin A [Listeria monocytogenes]
 gi|223698661|gb|ACN19014.1| internalin A [Listeria monocytogenes]
 gi|223698667|gb|ACN19018.1| internalin A [Listeria monocytogenes]
 gi|223698676|gb|ACN19024.1| internalin A [Listeria monocytogenes]
 gi|223698679|gb|ACN19026.1| internalin A [Listeria monocytogenes]
 gi|223698685|gb|ACN19030.1| internalin A [Listeria monocytogenes]
 gi|223698688|gb|ACN19032.1| internalin A [Listeria monocytogenes]
 gi|223698709|gb|ACN19046.1| internalin A [Listeria monocytogenes]
 gi|223698721|gb|ACN19054.1| internalin A [Listeria monocytogenes]
 gi|223698724|gb|ACN19056.1| internalin A [Listeria monocytogenes]
 gi|223698727|gb|ACN19058.1| internalin A [Listeria monocytogenes]
 gi|223698730|gb|ACN19060.1| internalin A [Listeria monocytogenes]
 gi|223698733|gb|ACN19062.1| internalin A [Listeria monocytogenes]
 gi|223698742|gb|ACN19068.1| internalin A [Listeria monocytogenes]
 gi|223698763|gb|ACN19082.1| internalin A [Listeria monocytogenes]
 gi|223698790|gb|ACN19100.1| internalin A [Listeria monocytogenes]
 gi|223698808|gb|ACN19112.1| internalin A [Listeria monocytogenes]
 gi|223698811|gb|ACN19114.1| internalin A [Listeria monocytogenes]
 gi|223698823|gb|ACN19122.1| internalin A [Listeria monocytogenes]
 gi|223698853|gb|ACN19142.1| internalin A [Listeria monocytogenes]
 gi|223698874|gb|ACN19156.1| internalin A [Listeria monocytogenes]
 gi|223698889|gb|ACN19166.1| internalin A [Listeria monocytogenes]
 gi|223698949|gb|ACN19206.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 123/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 15  LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 68

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 69  IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLAN 120

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 121 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 173

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 174 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 227

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 228 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 285

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 286 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 343

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 344 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 374



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/250 (32%), Positives = 122/250 (48%), Gaps = 24/250 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 5   SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 60

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 61  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 113

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 224

Query: 460 ----AGLRHL 465
               AGL  L
Sbjct: 225 ISPLAGLTAL 234


>gi|443428800|gb|AGC92199.1| truncated internalin A [Listeria monocytogenes]
 gi|443428802|gb|AGC92200.1| truncated internalin A [Listeria monocytogenes]
 gi|443428806|gb|AGC92202.1| truncated internalin A [Listeria monocytogenes]
 gi|443428824|gb|AGC92211.1| truncated internalin A [Listeria monocytogenes]
 gi|443428830|gb|AGC92214.1| truncated internalin A [Listeria monocytogenes]
 gi|443428832|gb|AGC92215.1| truncated internalin A [Listeria monocytogenes]
 gi|443428834|gb|AGC92216.1| truncated internalin A [Listeria monocytogenes]
          Length = 797

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|219821372|gb|ACL37826.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 42  LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 95

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 96  IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 147

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 148 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 200

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 201 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 254

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 255 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 312

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 313 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKVNV 370

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 371 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 34  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 86

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 87  TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 141

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 142 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 199

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 254

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 255 LAGLTALTN 263


>gi|313485058|gb|ADR53003.1| InlA [Listeria monocytogenes]
          Length = 765

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|112961700|gb|ABI28486.1| internalin A [Listeria monocytogenes]
          Length = 748

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 49  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 154

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 377

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 378 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 43  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 95

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 96  TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 150

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 151 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 208

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 209 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 263

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 264 LAGLTALTN 272


>gi|371942076|gb|AEX60850.1| internaline [Listeria monocytogenes]
 gi|371942078|gb|AEX60851.1| internaline [Listeria monocytogenes]
 gi|371942082|gb|AEX60853.1| internaline [Listeria monocytogenes]
          Length = 789

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLTNL+   LSF G   
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 309 NISPLAGLTALTN 321


>gi|357615345|gb|EHJ69606.1| hypothetical protein KGM_07261 [Danaus plexippus]
          Length = 438

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 110/347 (31%), Positives = 165/347 (47%), Gaps = 52/347 (14%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMK-AFAGLINLVKLDLERCTRIHGGLVN---LKGLMKLE 158
           RG+  L  LS RR       G++ A A L  L  L L  C  +    +       L  L+
Sbjct: 116 RGVRRLQVLSLRR-------GLRDAVAALPGLESLSLSGCYSVTDAALASAFATELPALK 168

Query: 159 SLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC- 214
            L++  C  +TDS +  ++  L NL+ L++  C  VTD+G+  +  GL+KL  LNL  C 
Sbjct: 169 RLDLSLCKQVTDSSLGRIAQSLKNLEELELGGCCNVTDTGLLLIAWGLRKLRRLNLRSCW 228

Query: 215 PVTAACLDSLSALGS------LFYLNLNRCQLSDDGCEKFSKIG--SLKVLNLGF-NEIT 265
            V    +  L   G       L +L L  CQ   D   K +  G   LK +NL F   +T
Sbjct: 229 HVNDDGIAHLCGGGEARGTPELEHLGLQDCQRLTDEALKHAATGLPKLKSINLSFCVAVT 288

Query: 266 DECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLS-G 322
           D  L HL  L +LE +NL +C G+ D G+ +L     L+ L++S   +VG   L H + G
Sbjct: 289 DAGLRHLARLPHLEDVNLRACDGVSDAGVAHLAESGRLRALDVSFCDKVGDEALSHATLG 348

Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG 381
           L+ L  ++LS   ++D  L ++A LS L++LN+    Q+TD GL AL             
Sbjct: 349 LSGLRCLSLSACRLTDEGLERVARLSQLETLNIGQCTQVTDRGLRALGE----------- 397

Query: 382 ARITDSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNL 427
                         KNL+++++ G   +T  G+ HI  L  L++LNL
Sbjct: 398 ------------GLKNLKAIDLYGCTCITHEGLDHIVKLPRLSVLNL 432



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 144/290 (49%), Gaps = 37/290 (12%)

Query: 32  ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLK-DCSNLQSLDFN 89
           AL+ L L     V D  +  IA    +L  ++L G  +VTD+GL+ +      L+ L+  
Sbjct: 166 ALKRLDLSLCKQVTDSSLGRIAQSLKNLEELELGGCCNVTDTGLLLIAWGLRKLRRLNLR 225

Query: 90  FCIQISDGGLEHL------RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
            C  ++D G+ HL      RG   L  L  +    +T + +K  A               
Sbjct: 226 SCWHVNDDGIAHLCGGGEARGTPELEHLGLQDCQRLTDEALKHAA--------------- 270

Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKG 202
                    GL KL+S+N+ +C  +TD+ ++ L+ L +L+ + + +C  V+D+G+A+L  
Sbjct: 271 --------TGLPKLKSINLSFCVAVTDAGLRHLARLPHLEDVNLRACDGVSDAGVAHLAE 322

Query: 203 LQKLTLLNLEGCPVTAACLDSLSALG--SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
             +L  L++  C        S + LG   L  L+L+ C+L+D+G E+ +++  L+ LN+G
Sbjct: 323 SGRLRALDVSFCDKVGDEALSHATLGLSGLRCLSLSACRLTDEGLERVARLSQLETLNIG 382

Query: 261 -FNEITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL 307
              ++TD  L  L +GL NL++++L  C  I  EGL ++  L  L  L L
Sbjct: 383 QCTQVTDRGLRALGEGLKNLKAIDLYGCTCITHEGLDHIVKLPRLSVLNL 432



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 102/307 (33%), Positives = 158/307 (51%), Gaps = 26/307 (8%)

Query: 182 LKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSA--LGSLFYLNLNR 237
           ++ LQ+ S  +     +A L GL+ L+L    GC  VT A L S  A  L +L  L+L+ 
Sbjct: 118 VRRLQVLSLRRGLRDAVAALPGLESLSL---SGCYSVTDAALASAFATELPALKRLDLSL 174

Query: 238 C-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSCG-IGDEG 292
           C Q++D    + ++ + +L+ L LG    +TD  L+ +  GL  L  LNL SC  + D+G
Sbjct: 175 CKQVTDSSLGRIAQSLKNLEELELGGCCNVTDTGLLLIAWGLRKLRRLNLRSCWHVNDDG 234

Query: 293 LVNL------TGLCNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRK 343
           + +L       G   L+ L L D Q +    L+H + GL  L+SINLSF   ++D  LR 
Sbjct: 235 IAHLCGGGEARGTPELEHLGLQDCQRLTDEALKHAATGLPKLKSINLSFCVAVTDAGLRH 294

Query: 344 LAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLR-NFKNLRS 400
           LA L  L+ +NL A   ++D G+A L     L  LD+ F  ++ D   ++       LR 
Sbjct: 295 LARLPHLEDVNLRACDGVSDAGVAHLAESGRLRALDVSFCDKVGDEALSHATLGLSGLRC 354

Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVSN-SRIT 458
           L +    LTD G++ +  LS L  LN+ Q   +TD+ L  +  GL  L ++++   + IT
Sbjct: 355 LSLSACRLTDEGLERVARLSQLETLNIGQCTQVTDRGLRALGEGLKNLKAIDLYGCTCIT 414

Query: 459 SAGLRHL 465
             GL H+
Sbjct: 415 HEGLDHI 421


>gi|112959536|gb|ABI27295.1| internalin A [Listeria monocytogenes]
 gi|112959546|gb|ABI27300.1| internalin A [Listeria monocytogenes]
          Length = 734

 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 35  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 89  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 140

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 247

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 363

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 364 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 29  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 81

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 82  TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 136

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 137 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 194

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 195 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 249

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 250 LAGLTALTN 258


>gi|223698871|gb|ACN19154.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 13  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 67  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 118

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 341

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 5   SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 60

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 61  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 113

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 224

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 225 ISPLAGLTALTN 236


>gi|322790910|gb|EFZ15576.1| hypothetical protein SINV_11426 [Solenopsis invicta]
          Length = 526

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 156/316 (49%), Gaps = 68/316 (21%)

Query: 57  SSLLSVDLSG-SDVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLS 112
            +L +++LSG  ++TD G+ +   ++  +L  L+ + C Q++D  L  + + L NL  L 
Sbjct: 233 PNLEALNLSGCYNITDIGITNAFCQEYPSLTELNLSLCKQVTDTSLSRIAQYLKNLEHLE 292

Query: 113 FRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL--------MKLESLNI 162
                 IT  G+   A GL  L +LDL  C  +   G+ +L GL        + LE L++
Sbjct: 293 LGGCCNITNTGLLLIAWGLKKLKRLDLRSCWHVSDIGIAHLAGLNRETADGNLALEHLSL 352

Query: 163 KWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
           + C  ++D  ++ +S G T LKS+ +S C  +TDSG+ +L  +  L  LNL  C      
Sbjct: 353 QDCQRLSDEALRHVSLGFTTLKSINLSFCVCITDSGVKHLARMSSLRELNLRSC------ 406

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNL 278
            D++S +G  +        L++ G    S+I SL V    F ++I D+ LVH+ +GL NL
Sbjct: 407 -DNISDIGMAY--------LAEGG----SRITSLDV---SFCDKIGDQALVHISQGLFNL 450

Query: 279 ESLNLDSCGIGDEGLVNLT-----------GLC----------------NLKCLELSD-T 310
           +SL+L +C I DEG+  +            G C                NLKC++L   T
Sbjct: 451 KSLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDRGLHTVAESMKNLKCIDLYGCT 510

Query: 311 QVGSSGLRHLSGLTNL 326
           ++ +SGL  +  L  L
Sbjct: 511 KITTSGLERIMKLPQL 526



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 101/313 (32%), Positives = 156/313 (49%), Gaps = 44/313 (14%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLF 231
           L G+ NL++L +S C  +TD GI  A+ +    LT LNL  C  VT   L  ++     +
Sbjct: 229 LKGVPNLEALNLSGCYNITDIGITNAFCQEYPSLTELNLSLCKQVTDTSLSRIAQ----Y 284

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGD 290
             NL   +L   GC   +  G L +                 GL  L+ L+L SC  + D
Sbjct: 285 LKNLEHLELG--GCCNITNTGLLLIA---------------WGLKKLKRLDLRSCWHVSD 327

Query: 291 EGLVNLTGL--------CNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDG 339
            G+ +L GL          L+ L L D Q +    LRH+S G T L+SINLSF   I+D 
Sbjct: 328 IGIAHLAGLNRETADGNLALEHLSLQDCQRLSDEALRHVSLGFTTLKSINLSFCVCITDS 387

Query: 340 SLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNF 395
            ++ LA +SSL+ LNL +   I+D G+A L    + +T LD+ F  +I D    ++ +  
Sbjct: 388 GVKHLARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGL 447

Query: 396 KNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVS 453
            NL+SL +    ++D G+ K  K L  L  LN+ Q   LTD+ L  ++  +  L  +++ 
Sbjct: 448 FNLKSLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDRGLHTVAESMKNLKCIDLY 507

Query: 454 N-SRITSAGLRHL 465
             ++IT++GL  +
Sbjct: 508 GCTKITTSGLERI 520



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 167/345 (48%), Gaps = 54/345 (15%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL--KGLMKLES 159
           RG+  +  LS RR  +          G+ NL  L+L  C  I   G+ N   +    L  
Sbjct: 211 RGVKKVQVLSLRRGLS------DVLKGVPNLEALNLSGCYNITDIGITNAFCQEYPSLTE 264

Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCPV 216
           LN+  C  +TD+ +  ++  L NL+ L++  C  +T++G+  +  GL+KL  L+L  C  
Sbjct: 265 LNLSLCKQVTDTSLSRIAQYLKNLEHLELGGCCNITNTGLLLIAWGLKKLKRLDLRSCWH 324

Query: 217 TA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFS-KIGSLKVLNLGFNE-I 264
            +       A L+  +A G  +L +L+L  CQ LSD+     S    +LK +NL F   I
Sbjct: 325 VSDIGIAHLAGLNRETADGNLALEHLSLQDCQRLSDEALRHVSLGFTTLKSINLSFCVCI 384

Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
           TD  + HL  +++L  LNL SC  I D G+  L                         G 
Sbjct: 385 TDSGVKHLARMSSLRELNLRSCDNISDIGMAYLA-----------------------EGG 421

Query: 324 TNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLF 380
           + + S+++SF   I D +L  ++ GL +LKSL+L A QI+D G+  +  +L  L  L++ 
Sbjct: 422 SRITSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQISDEGICKIAKTLHDLETLNIG 481

Query: 381 G-ARITDSG-AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSL 422
             +R+TD G      + KNL+ +++ G   +T +G++ I  L  L
Sbjct: 482 QCSRLTDRGLHTVAESMKNLKCIDLYGCTKITTSGLERIMKLPQL 526


>gi|219821294|gb|ACL37774.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 40  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 94  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKV 368

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  L+NL 
Sbjct: 32  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLTNL+   LSF G   
Sbjct: 88  GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 139

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 140 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 195

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 196 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 251 NISPLAGLTALTN 263


>gi|386042770|ref|YP_005961575.1| internalin A [Listeria monocytogenes 10403S]
 gi|404409675|ref|YP_006695263.1| internalin A [Listeria monocytogenes SLCC5850]
 gi|403399436|sp|G2K3G6.1|INLA_LISM4 RecName: Full=Internalin-A; Flags: Precursor
 gi|150371722|dbj|BAF65676.1| internalin A [Listeria monocytogenes]
 gi|150371786|dbj|BAF65682.1| internalin A [Listeria monocytogenes]
 gi|150371800|dbj|BAF65689.1| internalin A [Listeria monocytogenes]
 gi|150371810|dbj|BAF65694.1| internalin A [Listeria monocytogenes]
 gi|150371812|dbj|BAF65695.1| internalin A [Listeria monocytogenes]
 gi|150371816|dbj|BAF65697.1| internalin A [Listeria monocytogenes]
 gi|150371826|dbj|BAF65702.1| internalin A [Listeria monocytogenes]
 gi|150371840|dbj|BAF65709.1| internalin A [Listeria monocytogenes]
 gi|150371842|dbj|BAF65710.1| internalin A [Listeria monocytogenes]
 gi|150371862|dbj|BAF65720.1| internalin A [Listeria monocytogenes]
 gi|150371866|dbj|BAF65722.1| internalin A [Listeria monocytogenes]
 gi|167861902|gb|ACA05650.1| InlA [Listeria monocytogenes]
 gi|167861984|gb|ACA05691.1| InlA [Listeria monocytogenes]
 gi|167862000|gb|ACA05699.1| InlA [Listeria monocytogenes]
 gi|167862006|gb|ACA05702.1| InlA [Listeria monocytogenes]
 gi|194239412|emb|CAQ76846.1| internalin A [Listeria monocytogenes]
 gi|223006784|gb|ACM69349.1| internalin A [Listeria monocytogenes]
 gi|298359776|gb|ADI77467.1| internalin A [Listeria monocytogenes]
 gi|298359804|gb|ADI77481.1| internalin A [Listeria monocytogenes]
 gi|298359874|gb|ADI77516.1| internalin A [Listeria monocytogenes]
 gi|298360072|gb|ADI77615.1| internalin A [Listeria monocytogenes]
 gi|298360106|gb|ADI77632.1| internalin A [Listeria monocytogenes]
 gi|298360118|gb|ADI77638.1| internalin A [Listeria monocytogenes]
 gi|298360218|gb|ADI77688.1| internalin A [Listeria monocytogenes]
 gi|298360262|gb|ADI77710.1| internalin A [Listeria monocytogenes]
 gi|298360280|gb|ADI77719.1| internalin A [Listeria monocytogenes]
 gi|298360386|gb|ADI77772.1| internalin A [Listeria monocytogenes]
 gi|298360468|gb|ADI77813.1| internalin A [Listeria monocytogenes]
 gi|298360570|gb|ADI77864.1| internalin A [Listeria monocytogenes]
 gi|298360722|gb|ADI77940.1| internalin A [Listeria monocytogenes]
 gi|302034307|gb|ADK92307.1| internalin A [Listeria monocytogenes]
 gi|302034309|gb|ADK92308.1| internalin A [Listeria monocytogenes]
 gi|302034311|gb|ADK92309.1| internalin A [Listeria monocytogenes]
 gi|302034313|gb|ADK92310.1| internalin A [Listeria monocytogenes]
 gi|302034319|gb|ADK92313.1| internalin A [Listeria monocytogenes]
 gi|302034321|gb|ADK92314.1| internalin A [Listeria monocytogenes]
 gi|302034323|gb|ADK92315.1| internalin A [Listeria monocytogenes]
 gi|302034325|gb|ADK92316.1| internalin A [Listeria monocytogenes]
 gi|345536004|gb|AEO05444.1| internalin A [Listeria monocytogenes 10403S]
 gi|404229501|emb|CBY50905.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC5850]
 gi|443428772|gb|AGC92185.1| internalin A [Listeria monocytogenes]
 gi|443428780|gb|AGC92189.1| internalin A [Listeria monocytogenes]
 gi|443428864|gb|AGC92231.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 123/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|350417674|ref|XP_003491538.1| PREDICTED: F-box/LRR-repeat protein 14-like [Bombus impatiens]
          Length = 485

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 170/321 (52%), Gaps = 44/321 (13%)

Query: 57  SSLLSVDLSG-SDVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLS 112
            +L +++LSG  ++TD GLI+   ++ + L  L+ + C Q+SD  L  + + L NL  L 
Sbjct: 181 PNLEALNLSGCYNITDVGLINAFCQEYATLIELNLSLCKQVSDISLGRIVQYLKNLEHLE 240

Query: 113 FRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL--------MKLESLNI 162
                 IT  G+   A  L  L +LDL  C ++   G+ +L G+        + LE L++
Sbjct: 241 LGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAGGNLALEHLSL 300

Query: 163 KWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
           + C  ++D  ++ +S GLT LKS+ +S C  +TDSG+ +L  +  L  LNL  C      
Sbjct: 301 QDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLRSC------ 354

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNL 278
            D++S +G  +        L++ G    S+I SL V    F ++I D+ LVH+ +GL NL
Sbjct: 355 -DNISDIGMAY--------LAEGG----SRISSLDV---SFCDKIGDQALVHISQGLFNL 398

Query: 279 ESLNLDSCGIGDEGLVNLTG-LCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFT 334
           + L+L +C I DEG+  +   L +L+ L +   +++   GL  ++  + +L+ I+L   T
Sbjct: 399 KLLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCT 458

Query: 335 GISDGSLRKLAGLSSLKSLNL 355
            IS   L ++  L  L +LNL
Sbjct: 459 RISTNGLERIMKLPQLSTLNL 479



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 94/271 (34%), Positives = 140/271 (51%), Gaps = 32/271 (11%)

Query: 200 LKGLQKLTLLNLEGCP-------VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSK- 250
           LKG+  L  LNL GC        + A C +      +L  LNL+ C Q+SD    +  + 
Sbjct: 177 LKGVPNLEALNLSGCYNITDVGLINAFCQE----YATLIELNLSLCKQVSDISLGRIVQY 232

Query: 251 IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSCG-IGDEGLVNLTGL-------- 299
           + +L+ L LG    IT+  L+ +   L  L+ L+L SC  + D G+ +L G+        
Sbjct: 233 LKNLEHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAGGN 292

Query: 300 CNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD 356
             L+ L L D Q +    LRH+S GLT L+SINLSF   I+D  L+ LA +SSL+ LNL 
Sbjct: 293 LALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLR 352

Query: 357 A-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAG 412
           +   I+D G+A L    + ++ LD+ F  +I D    ++ +   NL+ L +    ++D G
Sbjct: 353 SCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEG 412

Query: 413 V-KHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
           + K  K L  L  LN+ Q   LTDK L  I+
Sbjct: 413 ICKIAKTLHDLETLNIGQCSRLTDKGLYTIA 443



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 120/247 (48%), Gaps = 39/247 (15%)

Query: 28  FRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD---VTDSGLIHLK-DCSN 82
            R C  + DL +    GVN +      S G +L    LS  D   ++D  L H+    + 
Sbjct: 267 LRSCWQVSDLGIAHLAGVNRE------SAGGNLALEHLSLQDCQRLSDEALRHVSIGLTT 320

Query: 83  LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
           L+S++ +FC+ I+D GL+HL  +S+L  L+ R  + I+  GM   A              
Sbjct: 321 LKSINLSFCVCITDSGLKHLAKMSSLRELNLRSCDNISDIGMAYLA-------------- 366

Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL- 200
                    +G  ++ SL++ +C+ I D  +  +S GL NLK L +S  +++D GI  + 
Sbjct: 367 ---------EGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGICKIA 417

Query: 201 KGLQKLTLLNLEGCP-VTAACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVL 257
           K L  L  LN+  C  +T   L +++ ++  L  ++L  C ++S +G E+  K+  L  L
Sbjct: 418 KTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTL 477

Query: 258 NLGFNEI 264
           NLG   +
Sbjct: 478 NLGLWHV 484



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 103/216 (47%), Gaps = 46/216 (21%)

Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLC---------NLK-CLELSDTQVGSSGLRHL 320
           LKG+ NLE+LNL  C  I D GL+N    C         NL  C ++SD  +G    R +
Sbjct: 177 LKGVPNLEALNLSGCYNITDVGLIN--AFCQEYATLIELNLSLCKQVSDISLG----RIV 230

Query: 321 SGLTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT----- 372
             L NLE + L     I++G L  +A  L  LK L+L +  Q++D G+A L  +      
Sbjct: 231 QYLKNLEHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAG 290

Query: 373 ---GLTHLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSSLT 423
               L HL L    R++D    ++      L+S+     +C   +TD+G+KH+  +SSL 
Sbjct: 291 GNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVC---ITDSGLKHLAKMSSLR 347

Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            LNL    N++D          G+  L    SRI+S
Sbjct: 348 ELNLRSCDNISD---------IGMAYLAEGGSRISS 374


>gi|313485079|gb|ADR53010.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|313485046|gb|ADR52998.1| InlA [Listeria monocytogenes]
          Length = 774

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|130774791|gb|ABO32410.1| InlA [Listeria monocytogenes]
 gi|298360240|gb|ADI77699.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 123/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|112959468|gb|ABI27261.1| internalin A [Listeria monocytogenes]
          Length = 730

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 28  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 81

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 82  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 133

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 134 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 186

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 187 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 240

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 241 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 298

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 299 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 356

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 357 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 389



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 20  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 75

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 76  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 128

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 129 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 184

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 185 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 239

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 240 ISPLAGLTALTN 251


>gi|150371888|dbj|BAF65733.1| internalin A [Listeria monocytogenes]
 gi|150371890|dbj|BAF65734.1| internalin A [Listeria monocytogenes]
          Length = 797

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|371942140|gb|AEX60882.1| internaline [Listeria monocytogenes]
          Length = 790

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLTNL+   LSF G   
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 309 NISPLAGLTALTN 321


>gi|126143308|gb|ABN80096.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITPLGLNDQEWTNPPVNYKVNV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|112961772|gb|ABI28534.1| internalin A [Listeria monocytogenes]
          Length = 748

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 49  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 154

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 377

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 378 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 41  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 96

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLT+L+   LSF G    
Sbjct: 97  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 149

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 150 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 205

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 206 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 260

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 261 ISPLAGLTALTN 272


>gi|167862012|gb|ACA05705.1| InlA [Listeria monocytogenes]
          Length = 797

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|371942068|gb|AEX60846.1| internaline [Listeria monocytogenes]
 gi|371942088|gb|AEX60856.1| internaline [Listeria monocytogenes]
 gi|371942106|gb|AEX60865.1| internaline [Listeria monocytogenes]
 gi|371942134|gb|AEX60879.1| internaline [Listeria monocytogenes]
          Length = 790

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLTNL+   LSF G   
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 309 NISPLAGLTALTN 321


>gi|363728137|ref|XP_003640464.1| PREDICTED: F-box/LRR-repeat protein 14 [Gallus gallus]
          Length = 399

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 91/252 (36%), Positives = 141/252 (55%), Gaps = 24/252 (9%)

Query: 239 QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLV 294
           Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + D G+ 
Sbjct: 128 QITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIG 187

Query: 295 NLTGLCN--------LKCLELSDTQVGSS-GLRHLS-GLTNLESINLSFTG-ISDGSLRK 343
           +L G+          L+ L L D Q  S   L+HL+ GL  L  +NLSF G ISD  L  
Sbjct: 188 HLAGMTRSAAEGCLGLEQLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCGGISDAGLLH 247

Query: 344 LAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNL 398
           L+ +SSL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +    L
Sbjct: 248 LSHMSSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGL 306

Query: 399 RSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-S 455
           RSL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  +++   +
Sbjct: 307 RSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT 366

Query: 456 RITSAGLRHLNH 467
           RIT  GL  +  
Sbjct: 367 RITKRGLERITQ 378



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 166/329 (50%), Gaps = 36/329 (10%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
           RG+  +  LS RR+ +   QGM       ++  L+L  C  +     G   +  +  L S
Sbjct: 67  RGIRRVQILSLRRSLSYVIQGMA------DIESLNLSGCYNLTDNGLGHAFVAEISSLRS 120

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           LN+  C  ITDS +  ++    LK L++     CS +T++G+  +  GLQ+L  LNL  C
Sbjct: 121 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 178

Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
              +       A +   +A G   L  L L  CQ LSD   +  ++ +G L+ LNL F  
Sbjct: 179 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCG 238

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRH 319
            I+D  L+HL  +++L SLNL SC  I D G+++L  G   L  L++S   +VG   L +
Sbjct: 239 GISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 298

Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
           ++ GL  L S++L    ISD  + R +  +  L++LN+    +ITD GL  +   L+ LT
Sbjct: 299 IAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 358

Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEI 403
            +DL+G  RIT  G   +     L+ L +
Sbjct: 359 GIDLYGCTRITKRGLERITQLPCLKVLNL 387



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 97/315 (30%), Positives = 167/315 (53%), Gaps = 32/315 (10%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
           ++  ++++SL+ + C  ++D GL H  +  +S+L SL+      IT   +   A  +  L
Sbjct: 85  IQGMADIESLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLCKQITDSSLGRIAQYLKGL 144

Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
             L+L  C+ I   G L+   GL +L+SLN++ C  ++D  +  L+G+T         L+
Sbjct: 145 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 204

Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
            L +  C K++D  + +L +GL +L  LNL  C  ++ A L  LS + SL  LNL  C  
Sbjct: 205 QLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCGGISDAGLLHLSHMSSLRSLNLRSCDN 264

Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
           +SD G    + +GSL++  L++ F +++ D+ L ++ +GL  L SL+L SC I DEG+  
Sbjct: 265 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINR 323

Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
               + GL  L   +C+ ++D  +      HLS LT ++      T I+   L ++  L 
Sbjct: 324 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG--CTRITKRGLERITQLP 380

Query: 349 SLKSLNLDARQITDT 363
            LK LNL   ++T++
Sbjct: 381 CLKVLNLGLWEMTES 395



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 55/204 (26%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           ++D+GL+HL   S+L+SL+   C  ISD G+ HL                          
Sbjct: 240 ISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHL------------------------AM 275

Query: 129 GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNC-ITDSDM-KPLSGLTNLKS 184
           G + L  LD+  C ++    +    +GL  L SL++  C+C I+D  + + +  +  L++
Sbjct: 276 GSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSL--CSCHISDEGINRMVRQMHGLRT 333

Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           L I  C ++TD G+  + + L +LT ++L GC                        +++ 
Sbjct: 334 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 370

Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
            G E+ +++  LKVLNLG  E+T+
Sbjct: 371 RGLERITQLPCLKVLNLGLWEMTE 394



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 106/208 (50%), Gaps = 32/208 (15%)

Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
           ++G+ ++ESLNL  C      G+G   +  ++ L +L    C +++D+ +G    ++L G
Sbjct: 85  IQGMADIESLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLCKQITDSSLGRIA-QYLKG 143

Query: 323 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 372
           L  LE     N++ TG+    L    GL  LKSLNL + R ++D G+  L  +T      
Sbjct: 144 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 199

Query: 373 --GLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLN 426
             GL  L L    +++D    +L R    LR L +  CGG ++DAG+ H+  +SSL  LN
Sbjct: 200 CLGLEQLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCGG-ISDAGLLHLSHMSSLRSLN 258

Query: 427 LSQNCNLTDK-TLELISGLTGLVSLNVS 453
           L    N++D   + L  G   L  L+VS
Sbjct: 259 LRSCDNISDTGIMHLAMGSLRLSGLDVS 286


>gi|321455314|gb|EFX66450.1| hypothetical protein DAPPUDRAFT_302690 [Daphnia pulex]
          Length = 397

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 100/316 (31%), Positives = 157/316 (49%), Gaps = 43/316 (13%)

Query: 61  SVDLSGS-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRN 116
           S+DLSG  +VTD G+ H    D   L+ L+ + C QI+D  L  L +    L  L     
Sbjct: 98  SLDLSGCFNVTDIGIAHALTADVPTLKRLNLSLCKQITDSSLSKLAQYCRQLQELDLGGC 157

Query: 117 NAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL-------MKLESLNIKWCNC 167
             +T  G+   A GL +L  L+L  C  +   G+ +L GL       + LE L ++ C  
Sbjct: 158 CNVTNAGLLLIAWGLKSLKSLNLRSCWHVSDLGIASLAGLGSDAEGNLALEHLGLQDCQK 217

Query: 168 ITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           +TD  +  +S GL  LKS+ +S C  ++DSG+ YL  +  L  LNL  C       D++S
Sbjct: 218 LTDDALMHVSTGLKQLKSINLSFCLSISDSGLKYLAKMPSLAELNLRSC-------DNIS 270

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNL 283
            +G + YL            E  S+I SL V    F + I D+ +VH+ +GL +L+ L+L
Sbjct: 271 DVG-MAYL-----------AEGGSRITSLDV---SFCDRIDDQAVVHVAQGLVHLKQLSL 315

Query: 284 DSCGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSG-LTNLESINL-SFTGISDG 339
            +C + DEGL+ +   L +L+ L +   +++    ++ ++  L  L  I+L   T I+  
Sbjct: 316 SACHVSDEGLIRVALSLLDLQTLNIGQCSRITDRSIQAVADHLRKLRCIDLYGCTKITTS 375

Query: 340 SLRKLAGLSSLKSLNL 355
            L K+  L  L  LNL
Sbjct: 376 GLEKIMKLPELSVLNL 391



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 27/205 (13%)

Query: 273 KGLTNLESLNLDSC-GIGDEGLVN-LTG-LCNLKCLELS-DTQVGSSGLRHLSGL-TNLE 327
           +GL N+ESL+L  C  + D G+ + LT  +  LK L LS   Q+  S L  L+     L+
Sbjct: 91  QGLPNIESLDLSGCFNVTDIGIAHALTADVPTLKRLNLSLCKQITDSSLSKLAQYCRQLQ 150

Query: 328 SINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSL-------TGLTHL 377
            ++L     +++  L  +A GL SLKSLNL +   ++D G+A+L  L         L HL
Sbjct: 151 ELDLGGCCNVTNAGLLLIAWGLKSLKSLNLRSCWHVSDLGIASLAGLGSDAEGNLALEHL 210

Query: 378 DLFG-ARITDSGAAYLRN-FKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
            L    ++TD    ++    K L+S+ +     ++D+G+K++  + SL  LNL    N++
Sbjct: 211 GLQDCQKLTDDALMHVSTGLKQLKSINLSFCLSISDSGLKYLAKMPSLAELNLRSCDNIS 270

Query: 435 DKTLELISGLTGLVSLNVSNSRITS 459
           D          G+  L    SRITS
Sbjct: 271 D---------VGMAYLAEGGSRITS 286


>gi|219821375|gb|ACL37828.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 42  LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 95

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 96  IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 147

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 148 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 200

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 201 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 254

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 255 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 312

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 313 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKVNV 370

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 371 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 34  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 86

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 87  TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 141

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 142 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 199

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 254

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 255 LAGLTALTN 263


>gi|149674|gb|AAA25289.1| internalin [Listeria monocytogenes]
 gi|22347564|gb|AAM95927.1| internalin A precursor [Listeria monocytogenes]
          Length = 744

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 123/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 44  LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 97

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 98  IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLAN 149

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 150 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 202

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 203 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 256

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 257 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 314

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 315 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 372

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 373 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 403



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 34  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 89

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 90  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 142

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 253

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 254 ISPLAGLTALTN 265


>gi|130774759|gb|ABO32394.1| InlA [Listeria monocytogenes]
 gi|298360132|gb|ADI77645.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|112961622|gb|ABI28434.1| internalin A [Listeria monocytogenes]
          Length = 751

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 49  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 377

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 378 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 41  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 96

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 97  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 149

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 150 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 205

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 206 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 260

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 261 ISPLAGLTALTN 272


>gi|290992226|ref|XP_002678735.1| predicted protein [Naegleria gruberi]
 gi|284092349|gb|EFC45991.1| predicted protein [Naegleria gruberi]
          Length = 445

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 172/371 (46%), Gaps = 21/371 (5%)

Query: 47  KWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
           KW   IA Q   L S+++S    V   G   +     L  LD +F   I   G + +  +
Sbjct: 80  KWAANIA-QLEQLKSLEISSDHKVGYDGAKVIGQLKQLTKLDISFNT-IGAEGAKFIGEM 137

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHG------GLVNLKGLMKL 157
             LT L+    N++T++G++  + L NL  L++      R  G      G   L+ L KL
Sbjct: 138 QQLTYLNIY-GNSLTSEGIRFISQLTNLTYLNVRFNEDFRFGGHDKGLEGAQYLRNLQKL 196

Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
            SL+I + N I +   K +  + +L  L I  + +   G+ +L  L+ L LL++    + 
Sbjct: 197 TSLDIGY-NQIGNDGAKFIGEIQSLTELTIRNNNLKAEGVRWLSKLKNLRLLSINNNHIK 255

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLGFNEITD--ECLVHLKG 274
              +  +  L  L +L+L   +++ +G E  SK +  +  L++  N I D  + L  +K 
Sbjct: 256 DEGVVHICKLKQLTHLDLWNTEITAEGIELVSKQLPKVTHLHISINVIRDGTKFLGEMKQ 315

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           LT LE+   D   +  EGL  L GL  L  L +++   G+ G + +S +  LE + ++  
Sbjct: 316 LTTLEA---DEIELDAEGLKYLVGLKKLNFLSVNNNLFGAEGCKVVSEMKQLEELCMNDN 372

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS--LTGLTHLDLFGARITDSGAAYL 392
            I D  ++ L  L SL SL L    I   G+  L S  L  LT LD+ G +IT S +   
Sbjct: 373 NIGDNGVQYLCELKSLTSLCLWNNNIGIEGVKLLCSGNLNNLTTLDIRGNQITKSDSHLF 432

Query: 393 RNFKNLRSLEI 403
            N K L  L I
Sbjct: 433 ENMKQLTELLI 443



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 164/363 (45%), Gaps = 45/363 (12%)

Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
           D  + T       N+  L +L+SL I   + +     K +  L  L  L IS + +   G
Sbjct: 71  DNTKITEFTKWAANIAQLEQLKSLEISSDHKVGYDGAKVIGQLKQLTKLDISFNTIGAEG 130

Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN-------------------- 236
             ++  +Q+LT LN+ G  +T+  +  +S L +L YLN+                     
Sbjct: 131 AKFIGEMQQLTYLNIYGNSLTSEGIRFISQLTNLTYLNVRFNEDFRFGGHDKGLEGAQYL 190

Query: 237 ------------RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
                         Q+ +DG +   +I SL  L +  N +  E +  L  L NL  L+++
Sbjct: 191 RNLQKLTSLDIGYNQIGNDGAKFIGEIQSLTELTIRNNNLKAEGVRWLSKLKNLRLLSIN 250

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRK 343
           +  I DEG+V++  L  L  L+L +T++ + G+  +S  L  +  +++S   I DG+ + 
Sbjct: 251 NNHIKDEGVVHICKLKQLTHLDLWNTEITAEGIELVSKQLPKVTHLHISINVIRDGT-KF 309

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL----DLFGARITDSGAAYLRNFKNLR 399
           L  +  L +L  D  ++   GL  L  L  L  L    +LFGA     G   +   K L 
Sbjct: 310 LGEMKQLTTLEADEIELDAEGLKYLVGLKKLNFLSVNNNLFGAE----GCKVVSEMKQLE 365

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI--SGLTGLVSLNVSNSRI 457
            L +    + D GV+++ +L SLT L L  N N+  + ++L+    L  L +L++  ++I
Sbjct: 366 ELCMNDNNIGDNGVQYLCELKSLTSLCLWNN-NIGIEGVKLLCSGNLNNLTTLDIRGNQI 424

Query: 458 TSA 460
           T +
Sbjct: 425 TKS 427



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 136/317 (42%), Gaps = 36/317 (11%)

Query: 163 KWCNCITDSDMKP----------------LSGLTNLKSLQISCS-KVTDSGIAYLKGLQK 205
           K+ NC+TD  +                  ++ L  LKSL+IS   KV   G   +  L++
Sbjct: 56  KFKNCVTDLKLTHTADNTKITEFTKWAANIAQLEQLKSLEISSDHKVGYDGAKVIGQLKQ 115

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
           LT L++    + A     +  +  L YLN+    L+ +G    S++ +L  LN+ FNE  
Sbjct: 116 LTKLDISFNTIGAEGAKFIGEMQQLTYLNIYGNSLTSEGIRFISQLTNLTYLNVRFNE-- 173

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
                                  G EG   L  L  L  L++   Q+G+ G + +  + +
Sbjct: 174 --------------DFRFGGHDKGLEGAQYLRNLQKLTSLDIGYNQIGNDGAKFIGEIQS 219

Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           L  + +    +    +R L+ L +L+ L+++   I D G+  +  L  LTHLDL+   IT
Sbjct: 220 LTELTIRNNNLKAEGVRWLSKLKNLRLLSINNNHIKDEGVVHICKLKQLTHLDLWNTEIT 279

Query: 386 DSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
             G   + +    +  L I    + D G K + ++  LT L   +   L  + L+ + GL
Sbjct: 280 AEGIELVSKQLPKVTHLHISINVIRD-GTKFLGEMKQLTTLEADE-IELDAEGLKYLVGL 337

Query: 445 TGLVSLNVSNSRITSAG 461
             L  L+V+N+   + G
Sbjct: 338 KKLNFLSVNNNLFGAEG 354


>gi|112961694|gb|ABI28482.1| internalin A [Listeria monocytogenes]
 gi|112961706|gb|ABI28490.1| internalin A [Listeria monocytogenes]
 gi|112961763|gb|ABI28528.1| internalin A [Listeria monocytogenes]
          Length = 751

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 49  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 377

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 378 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 41  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 96

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLTNL+   LSF G   
Sbjct: 97  GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 148

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 149 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 204

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 205 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 259

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 260 NISPLAGLTALTN 272


>gi|22347548|gb|AAM95919.1| internalin A precursor [Listeria monocytogenes]
 gi|22347558|gb|AAM95924.1| internalin A precursor [Listeria monocytogenes]
 gi|22347560|gb|AAM95925.1| internalin A precursor [Listeria monocytogenes]
          Length = 744

 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 42  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 96  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 147

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 312

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 313 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 370

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 371 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 34  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 89

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 90  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 142

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 253

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 254 ISPLAGLTALTN 265


>gi|422808574|ref|ZP_16856985.1| Internalin A [Listeria monocytogenes FSL J1-208]
 gi|378752188|gb|EHY62773.1| Internalin A [Listeria monocytogenes FSL J1-208]
          Length = 802

 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|298360700|gb|ADI77929.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLTNL+   LSF G   
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 309 NISPLAGLTALTN 321


>gi|371942070|gb|AEX60847.1| internaline [Listeria monocytogenes]
          Length = 789

 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLTNL+   LSF G   
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 309 NISPLAGLTALTN 321


>gi|313485048|gb|ADR52999.1| InlA [Listeria monocytogenes]
 gi|313485083|gb|ADR53012.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|22347562|gb|AAM95926.1| internalin A precursor [Listeria monocytogenes]
          Length = 744

 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 42  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 96  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 147

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 312

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 313 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 370

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 371 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 34  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 89

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 90  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 142

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 253

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 254 ISPLAGLTALTN 265


>gi|298359932|gb|ADI77545.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 123/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|219821273|gb|ACL37760.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 40  NNLTQINFSNNQLTD--ITPLKDLTKLVDIVMNNN-QIAD--ITPLANLSNLTGLTLF-N 93

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 94  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT ++ L L     T+    Y  
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRISELGLNDQEWTNPPVNYKV 368

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  L+NL 
Sbjct: 32  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDIVMNNNQIAD--ITPLANLSNLT 87

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 88  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 251

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 252 ISPLAGLTALTN 263


>gi|112961619|gb|ABI28432.1| internalin A [Listeria monocytogenes]
 gi|112961637|gb|ABI28444.1| internalin A [Listeria monocytogenes]
 gi|112961655|gb|ABI28456.1| internalin A [Listeria monocytogenes]
 gi|112961658|gb|ABI28458.1| internalin A [Listeria monocytogenes]
 gi|112961766|gb|ABI28530.1| internalin A [Listeria monocytogenes]
          Length = 751

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 49  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 377

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 378 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 41  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 96

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 97  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 149

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 150 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 205

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 206 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 260

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 261 ISPLAGLTALTN 272


>gi|219821276|gb|ACL37762.1| internalin A [Listeria monocytogenes]
 gi|219821336|gb|ACL37802.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 40  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 94  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 368

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 34  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 86

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 87  TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 141

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 142 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 199

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 254

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 255 LAGLTALTN 263


>gi|112959518|gb|ABI27286.1| internalin A [Listeria monocytogenes]
 gi|112959520|gb|ABI27287.1| internalin A [Listeria monocytogenes]
          Length = 737

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 35  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 89  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 247

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 363

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 364 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 27  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLTNL+   LSF G   
Sbjct: 83  GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 134

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 135 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 190

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 191 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 245

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 246 NISPLAGLTALTN 258


>gi|371942090|gb|AEX60857.1| internaline [Listeria monocytogenes]
          Length = 790

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D +  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGVEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLTNL+   LSF G   
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 309 NISPLAGLTALTN 321


>gi|112961679|gb|ABI28472.1| internalin A [Listeria monocytogenes]
 gi|112961682|gb|ABI28474.1| internalin A [Listeria monocytogenes]
 gi|112961685|gb|ABI28476.1| internalin A [Listeria monocytogenes]
          Length = 751

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 49  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 377

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 378 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 41  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 96

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 97  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 149

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 150 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 205

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 206 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 260

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 261 ISPLAGLTALTN 272


>gi|223698883|gb|ACN19162.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 123/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 15  LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 68

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 69  IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLAN 120

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 121 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 173

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 174 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 227

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 228 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 285

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 286 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 343

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 344 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 374



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 124/251 (49%), Gaps = 26/251 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 5   SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 60

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLTNL+   LSF G   
Sbjct: 61  GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 112

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 113 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 168

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 169 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 223

Query: 459 S----AGLRHL 465
           +    AGL  L
Sbjct: 224 NISPLAGLTAL 234


>gi|219821261|gb|ACL37752.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 40  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 94  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 368

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 32  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLTNL+   LSF G   
Sbjct: 88  GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 139

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 140 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 195

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 196 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 251 NISPLAGLTALTN 263


>gi|194755888|ref|XP_001960211.1| GF13252 [Drosophila ananassae]
 gi|190621509|gb|EDV37033.1| GF13252 [Drosophila ananassae]
          Length = 492

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 102/312 (32%), Positives = 155/312 (49%), Gaps = 64/312 (20%)

Query: 7   SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
           S  +FN LV  R + +V + + R  +L+DL LG                  +L S++LSG
Sbjct: 208 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 249

Query: 67  S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
             +V D  L H    D  NL++LD + C QI+D  L    +HLR   NL +L       I
Sbjct: 250 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLETLELGGCCNI 306

Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
           T  G+   A GL  L  L+L  C  I   G+ +L G         ++LE L ++ C  ++
Sbjct: 307 TNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLS 366

Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           D  +  ++ GLT+LKS+ +S C  VTDSG+ +L  + KL  LNL  C       D++S +
Sbjct: 367 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 419

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
           G  +        L++ G    S I SL V    F ++I+D+ L H+ +GL  L SL+L+ 
Sbjct: 420 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 464

Query: 286 CGIGDEGLVNLT 297
           C I D G++ + 
Sbjct: 465 CQITDHGMLKIA 476



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 74/146 (50%), Gaps = 26/146 (17%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           ++D  L H+ +  ++L+S++ +FC+ ++D GL+HL  +  L  L+ R  + I+  GM   
Sbjct: 365 LSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYL 424

Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQ 186
                                   +G   + SL++ +C+ I+D  +  ++ GL  L+SL 
Sbjct: 425 T-----------------------EGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLS 461

Query: 187 ISCSKVTDSGIAYL-KGLQKLTLLNL 211
           ++  ++TD G+  + K L +L  LN+
Sbjct: 462 LNQCQITDHGMLKIAKALHELENLNI 487



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 33/219 (15%)

Query: 274 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 324
           G+  L SLNL  C       +G    V+L  L  L    C +++DT +G    +HL  L 
Sbjct: 238 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 296

Query: 325 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLT----- 375
            LE     N++ TG+    L    GL  LK LNL +   I+D G+  L   +  T     
Sbjct: 297 TLELGGCCNITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNL 352

Query: 376 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 428
            L+  G     R++D    ++ +   +L+S  L  C   +TD+G+KH+  +  L  LNL 
Sbjct: 353 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 411

Query: 429 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL 465
              N++D  +  L  G +G+ SL+VS   +I+   L H+
Sbjct: 412 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHI 450


>gi|112961616|gb|ABI28430.1| internalin A [Listeria monocytogenes]
 gi|112961649|gb|ABI28452.1| internalin A [Listeria monocytogenes]
 gi|112961652|gb|ABI28454.1| internalin A [Listeria monocytogenes]
 gi|112961664|gb|ABI28462.1| internalin A [Listeria monocytogenes]
 gi|112961691|gb|ABI28480.1| internalin A [Listeria monocytogenes]
 gi|112961718|gb|ABI28498.1| internalin A [Listeria monocytogenes]
 gi|112961727|gb|ABI28504.1| internalin A [Listeria monocytogenes]
 gi|112961748|gb|ABI28518.1| internalin A [Listeria monocytogenes]
 gi|112961751|gb|ABI28520.1| internalin A [Listeria monocytogenes]
 gi|112961769|gb|ABI28532.1| internalin A [Listeria monocytogenes]
 gi|112961775|gb|ABI28536.1| internalin A [Listeria monocytogenes]
          Length = 751

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 49  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 377

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 378 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 41  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 96

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 97  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 149

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 150 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 205

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 206 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 260

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 261 ISPLAGLTALTN 272


>gi|112961646|gb|ABI28450.1| internalin A [Listeria monocytogenes]
 gi|112961721|gb|ABI28500.1| internalin A [Listeria monocytogenes]
 gi|112961757|gb|ABI28524.1| internalin A [Listeria monocytogenes]
          Length = 751

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 49  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 377

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 378 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 41  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 96

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 97  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 149

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 150 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 205

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 206 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 260

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 261 ISPLAGLTALTN 272


>gi|112959438|gb|ABI27246.1| internalin A [Listeria monocytogenes]
 gi|112959450|gb|ABI27252.1| internalin A [Listeria monocytogenes]
 gi|112959456|gb|ABI27255.1| internalin A [Listeria monocytogenes]
 gi|112959496|gb|ABI27275.1| internalin A [Listeria monocytogenes]
 gi|112959498|gb|ABI27276.1| internalin A [Listeria monocytogenes]
 gi|112959526|gb|ABI27290.1| internalin A [Listeria monocytogenes]
 gi|112959528|gb|ABI27291.1| internalin A [Listeria monocytogenes]
          Length = 737

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 35  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 89  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 247

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 363

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 364 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 27  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 83  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 135

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 246

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 247 ISPLAGLTALTN 258


>gi|313485077|gb|ADR53009.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|219821366|gb|ACL37822.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 40  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 94  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 368

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 32  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLT+L+   LSF G    
Sbjct: 88  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 140

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 251

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 252 ISPLAGLTALTN 263


>gi|298360200|gb|ADI77679.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 123/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|298360648|gb|ADI77903.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|168700133|ref|ZP_02732410.1| hypothetical protein GobsU_11435 [Gemmata obscuriglobus UQM 2246]
          Length = 167

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 96/155 (61%), Gaps = 2/155 (1%)

Query: 315 SGLRHLSGLTN-LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
           +G++ L+ L   L ++NL  T ++D  +++LA L +L +L+L    +TD G+  L+ L G
Sbjct: 6   AGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLKG 65

Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
           LT L+L   +ITD+G   L   KNL  L++ G  +TDAG K +  L+ L  L+LS N  +
Sbjct: 66  LTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLS-NTQV 124

Query: 434 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHA 468
           TD  ++ ++ LTGL +L++  + +T AGL+ LN A
Sbjct: 125 TDAGVKALTALTGLTTLDLHGTGVTDAGLKELNAA 159



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 73/126 (57%), Gaps = 1/126 (0%)

Query: 290 DEGLVNLTGLCN-LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
           D G+  L  L   L  L L  T+V   G++ L+ L  L +++L  TG++D  +++L+GL 
Sbjct: 5   DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLK 64

Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
            L  L L + +ITD G+  L +L  L HLDL G ++TD+GA  L     L +L++    +
Sbjct: 65  GLTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQV 124

Query: 409 TDAGVK 414
           TDAGVK
Sbjct: 125 TDAGVK 130



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/148 (38%), Positives = 89/148 (60%), Gaps = 1/148 (0%)

Query: 242 DDGCEKFSKIGS-LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           D G ++ + +   L  LNL    +TD  +  L  L  L +L+L   G+ D G+  L+GL 
Sbjct: 5   DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLK 64

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            L  LEL  T++  +G++ L+ L NL  ++L  T ++D   ++L+GL+ L +L+L   Q+
Sbjct: 65  GLTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQV 124

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSG 388
           TD G+ ALT+LTGLT LDL G  +TD+G
Sbjct: 125 TDAGVKALTALTGLTTLDLHGTGVTDAG 152



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 80/144 (55%), Gaps = 3/144 (2%)

Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
           KGLT   +LNL    + D G+  L  L  L  L+L  T V  +G++ LSGL  L  + L 
Sbjct: 16  KGLT---TLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLKGLTRLELR 72

Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
            T I+D  +++LA L +L  L+L   ++TD G   L+ L  L  LDL   ++TD+G   L
Sbjct: 73  STKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQVTDAGVKAL 132

Query: 393 RNFKNLRSLEICGGGLTDAGVKHI 416
                L +L++ G G+TDAG+K +
Sbjct: 133 TALTGLTTLDLHGTGVTDAGLKEL 156



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 1/153 (0%)

Query: 219 ACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
           A +  L+AL   L  LNL R +++D G ++ + + +L  L+LG   +TD  +  L GL  
Sbjct: 6   AGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLKG 65

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           L  L L S  I D G+  L  L NL  L+L  T+V  +G + LSGL  L +++LS T ++
Sbjct: 66  LTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQVT 125

Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
           D  ++ L  L+ L +L+L    +TD GL  L +
Sbjct: 126 DAGVKALTALTGLTTLDLHGTGVTDAGLKELNA 158



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 85/152 (55%), Gaps = 1/152 (0%)

Query: 194 DSGIAYLKGLQK-LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
           D+G+  L  L K LT LNL    VT   +  L+AL +L  L+L    ++D G ++ S + 
Sbjct: 5   DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLK 64

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
            L  L L   +ITD  +  L  L NL  L+L    + D G   L+GL  L  L+LS+TQV
Sbjct: 65  GLTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQV 124

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
             +G++ L+ LT L +++L  TG++D  L++L
Sbjct: 125 TDAGVKALTALTGLTTLDLHGTGVTDAGLKEL 156



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 84/153 (54%), Gaps = 1/153 (0%)

Query: 170 DSDMKPLSGLTN-LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
           D+ +K L+ L   L +L +  ++VTD G+  L  L+ LT L+L G  VT A +  LS L 
Sbjct: 5   DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLK 64

Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
            L  L L   +++D G ++ + + +L  L+LG  ++TD     L GL  L +L+L +  +
Sbjct: 65  GLTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQV 124

Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
            D G+  LT L  L  L+L  T V  +GL+ L+
Sbjct: 125 TDAGVKALTALTGLTTLDLHGTGVTDAGLKELN 157



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 79/140 (56%), Gaps = 1/140 (0%)

Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
           L +LN++    +TD  +K L+ L  L +L +  + VTD+G+  L GL+ LT L L    +
Sbjct: 18  LTTLNLRRTR-VTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLKGLTRLELRSTKI 76

Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
           T A +  L+AL +L +L+L   +++D G ++ S +  L  L+L   ++TD  +  L  LT
Sbjct: 77  TDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQVTDAGVKALTALT 136

Query: 277 NLESLNLDSCGIGDEGLVNL 296
            L +L+L   G+ D GL  L
Sbjct: 137 GLTTLDLHGTGVTDAGLKEL 156



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 82/155 (52%), Gaps = 3/155 (1%)

Query: 96  DGGLEHLRGLSN-LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
           D G++ L  L+  LT+L+ RR   +T  G+K  A L  L  LDL        G+  L GL
Sbjct: 5   DAGVKELAALNKGLTTLNLRRTR-VTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGL 63

Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
             L  L ++    ITD+ +K L+ L NL  L +  +KVTD+G   L GL  L  L+L   
Sbjct: 64  KGLTRLELRSTK-ITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNT 122

Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
            VT A + +L+AL  L  L+L+   ++D G ++ +
Sbjct: 123 QVTDAGVKALTALTGLTTLDLHGTGVTDAGLKELN 157



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 86/181 (47%), Gaps = 27/181 (14%)

Query: 46  DKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
           D  +  +A+    L +++L  + VTD G+  L     L +LD      ++D G++ L GL
Sbjct: 5   DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGT-GVTDAGVKELSGL 63

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
             LT L  R +  IT  G+K  A L NL  LDL       GG                  
Sbjct: 64  KGLTRLELR-STKITDAGVKELAALKNLNHLDL-------GG------------------ 97

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
             +TD+  K LSGL  L +L +S ++VTD+G+  L  L  LT L+L G  VT A L  L+
Sbjct: 98  TKVTDAGAKELSGLNFLVTLDLSNTQVTDAGVKALTALTGLTTLDLHGTGVTDAGLKELN 157

Query: 226 A 226
           A
Sbjct: 158 A 158


>gi|130774815|gb|ABO32420.1| InlA [Listeria monocytogenes]
 gi|194239404|emb|CAQ76842.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 123/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|112959452|gb|ABI27253.1| internalin A [Listeria monocytogenes]
          Length = 737

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 35  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 89  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 247

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 363

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 364 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 27  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 83  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 135

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 246

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 247 ISPLAGLTALTN 258


>gi|223698625|gb|ACN18990.1| internalin A [Listeria monocytogenes]
 gi|223698736|gb|ACN19064.1| internalin A [Listeria monocytogenes]
 gi|223698739|gb|ACN19066.1| internalin A [Listeria monocytogenes]
 gi|223698847|gb|ACN19138.1| internalin A [Listeria monocytogenes]
 gi|223698904|gb|ACN19176.1| internalin A [Listeria monocytogenes]
 gi|223698955|gb|ACN19210.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 13  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 67  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 118

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 341

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/250 (32%), Positives = 122/250 (48%), Gaps = 24/250 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 5   SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 60

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 61  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 113

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 224

Query: 460 ----AGLRHL 465
               AGL  L
Sbjct: 225 ISPLAGLTAL 234


>gi|112961697|gb|ABI28484.1| internalin A [Listeria monocytogenes]
 gi|112961709|gb|ABI28492.1| internalin A [Listeria monocytogenes]
 gi|112961730|gb|ABI28506.1| internalin A [Listeria monocytogenes]
 gi|112961760|gb|ABI28526.1| internalin A [Listeria monocytogenes]
          Length = 751

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 49  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 154

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 377

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 378 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 43  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 95

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 96  TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 150

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 151 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 208

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 209 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 263

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 264 LAGLTALTN 272


>gi|29423714|gb|AAO73555.1| internalin A [Listeria monocytogenes]
          Length = 743

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 123/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 43  LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 96

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 97  IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLAN 148

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 149 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 201

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 202 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 255

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 256 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 313

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 314 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 371

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 372 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 402



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 33  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 88

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 89  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 141

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 142 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 197

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 198 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 252

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 253 ISPLAGLTALTN 264


>gi|322952088|gb|ADX21043.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|224124658|ref|XP_002330078.1| predicted protein [Populus trichocarpa]
 gi|222871503|gb|EEF08634.1| predicted protein [Populus trichocarpa]
          Length = 1228

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 105/320 (32%), Positives = 149/320 (46%), Gaps = 25/320 (7%)

Query: 83  LQSLD--FNFCIQISDG-GLEHLRG-LSNLTSLSFRRNNAITAQG-MKAFAGLINLVKLD 137
           LQSLD  +N  +  S+  G E L   L  L  L   RN     +G +  F GL  L  LD
Sbjct: 97  LQSLDLSYNGLVGCSENEGFEVLSSKLRKLEVLDLTRNRFNNDKGILSCFNGLSALKSLD 156

Query: 138 LERCTRIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
           L        GL  L   L KLE+L++    C  DS    ++G ++LKSL +S ++VT SG
Sbjct: 157 LSDNQLTGSGLKVLSSRLKKLENLHLSANQC-NDSIFSSITGFSSLKSLDLSYNEVTGSG 215

Query: 197 IAYLKG-LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
           +  L   L++L  L+L       +   SL+   SL  LNL+  QL+        K G   
Sbjct: 216 LKVLSSRLKRLENLDLSDNQCNDSIFSSLTGFSSLKSLNLSYNQLTGSSMVSIEKNGYYS 275

Query: 256 VLNL--------GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
            L            +       V + GL NLE L+L S  + +  L +L+G   LK L+L
Sbjct: 276 FLQYTKWILPLYPSDNFLSGFQVLVSGLRNLEELHLYSNKLNNNILSSLSGFSTLKSLDL 335

Query: 308 SDTQV-GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
           S  +  GS+GL+   GL NLE + L F   ++  L  L+G S+LKSL+L   + T +   
Sbjct: 336 SYNKFTGSTGLK---GLRNLEELYLGFNKFNNSILSSLSGFSTLKSLDLSNNKFTGS--- 389

Query: 367 ALTSLTGLTHLDLFGARITD 386
               L GL +L+      TD
Sbjct: 390 --IGLKGLRNLETLNLEYTD 407



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 172/371 (46%), Gaps = 56/371 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLI----HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
           S+L S+DLS + +T SGL      LK   NL  L  N C   +D     + G S+L SL 
Sbjct: 150 SALKSLDLSDNQLTGSGLKVLSSRLKKLENLH-LSANQC---NDSIFSSITGFSSLKSLD 205

Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
              N  +T  G+K  +                         L +LE+L++    C  DS 
Sbjct: 206 LSYN-EVTGSGLKVLS-----------------------SRLKRLENLDLSDNQC-NDSI 240

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-------- 224
              L+G ++LKSL +S +++T S +  ++     + L      +     D+         
Sbjct: 241 FSSLTGFSSLKSLNLSYNQLTGSSMVSIEKNGYYSFLQYTKWILPLYPSDNFLSGFQVLV 300

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
           S L +L  L+L   +L+++     S   +LK L+L +N+ T      LKGL NLE L L 
Sbjct: 301 SGLRNLEELHLYSNKLNNNILSSLSGFSTLKSLDLSYNKFTGS--TGLKGLRNLEELYLG 358

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQV-GSSGLRHLSGLTNLESINLSFTGISDGSL-R 342
                +  L +L+G   LK L+LS+ +  GS GL+   GL NLE++NL +T   +  L  
Sbjct: 359 FNKFNNSILSSLSGFSTLKSLDLSNNKFTGSIGLK---GLRNLETLNLEYTDFKESILIE 415

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
            L  L SLK+L     +    G   L++ + L  + L+ + +    A++LRN  +L +L+
Sbjct: 416 SLGALPSLKTLYASYSKFKHFG-KGLSNSSSLEEVFLYYSYLP---ASFLRNIGHLSTLK 471

Query: 403 ICGGGLTDAGV 413
           +    L+ AGV
Sbjct: 472 V----LSLAGV 478



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 3/163 (1%)

Query: 290 DEGLVN-LTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGL 347
           D+G+++   GL  LK L+LSD Q+  SGL+ LS  L  LE+++LS    +D     + G 
Sbjct: 139 DKGILSCFNGLSALKSLDLSDNQLTGSGLKVLSSRLKKLENLHLSANQCNDSIFSSITGF 198

Query: 348 SSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
           SSLKSL+L   ++T +GL  L+S L  L +LDL   +  DS  + L  F +L+SL +   
Sbjct: 199 SSLKSLDLSYNEVTGSGLKVLSSRLKRLENLDLSDNQCNDSIFSSLTGFSSLKSLNLSYN 258

Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449
            LT + +  I+     + L  ++       +   +SG   LVS
Sbjct: 259 QLTGSSMVSIEKNGYYSFLQYTKWILPLYPSDNFLSGFQVLVS 301



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 119/246 (48%), Gaps = 39/246 (15%)

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFS-KIGSLKVLNLGFNEITDECLVHLKGLTN 277
           +C + LSAL SL   +L+  QL+  G +  S ++  L+ L+L  N+  D     + G ++
Sbjct: 144 SCFNGLSALKSL---DLSDNQLTGSGLKVLSSRLKKLENLHLSANQCNDSIFSSITGFSS 200

Query: 278 LESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF--- 333
           L+SL+L    +   GL  L+  L  L+ L+LSD Q   S    L+G ++L+S+NLS+   
Sbjct: 201 LKSLDLSYNEVTGSGLKVLSSRLKRLENLDLSDNQCNDSIFSSLTGFSSLKSLNLSYNQL 260

Query: 334 TGISDGSLRK-----------------------------LAGLSSLKSLNLDARQITDTG 364
           TG S  S+ K                             ++GL +L+ L+L + ++ +  
Sbjct: 261 TGSSMVSIEKNGYYSFLQYTKWILPLYPSDNFLSGFQVLVSGLRNLEELHLYSNKLNNNI 320

Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
           L++L+  + L  LDL   + T  G+  L+  +NL  L +      ++ +  +   S+L  
Sbjct: 321 LSSLSGFSTLKSLDLSYNKFT--GSTGLKGLRNLEELYLGFNKFNNSILSSLSGFSTLKS 378

Query: 425 LNLSQN 430
           L+LS N
Sbjct: 379 LDLSNN 384



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 8/149 (5%)

Query: 49  MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL 108
             V+ S   +L  + L  + + ++ L  L   S L+SLD ++       GL+ LR L  L
Sbjct: 296 FQVLVSGLRNLEELHLYSNKLNNNILSSLSGFSTLKSLDLSYNKFTGSTGLKGLRNLEEL 355

Query: 109 TSLSFRR-NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
             L F + NN+I    + + +G   L  LDL        G + LKGL  LE+LN+++ + 
Sbjct: 356 Y-LGFNKFNNSI----LSSLSGFSTLKSLDLS--NNKFTGSIGLKGLRNLETLNLEYTDF 408

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
                ++ L  L +LK+L  S SK    G
Sbjct: 409 KESILIESLGALPSLKTLYASYSKFKHFG 437


>gi|219821339|gb|ACL37804.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 40  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 94  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 368

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 32  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLT+L+   LSF G    
Sbjct: 88  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 140

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 251

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 252 ISPLAGLTALTN 263


>gi|226223065|ref|YP_002757172.1| Internalin A [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|386731210|ref|YP_006204706.1| internalin A [Listeria monocytogenes 07PF0776]
 gi|406703224|ref|YP_006753578.1| internalin A (LPXTG motif) [Listeria monocytogenes L312]
 gi|167861892|gb|ACA05645.1| InlA [Listeria monocytogenes]
 gi|167861914|gb|ACA05656.1| InlA [Listeria monocytogenes]
 gi|167861978|gb|ACA05688.1| InlA [Listeria monocytogenes]
 gi|194239396|emb|CAQ76838.1| internalin A [Listeria monocytogenes]
 gi|225875527|emb|CAS04230.1| Internalin A [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|298359780|gb|ADI77469.1| internalin A [Listeria monocytogenes]
 gi|384389968|gb|AFH79038.1| internalin A [Listeria monocytogenes 07PF0776]
 gi|406360254|emb|CBY66527.1| internalin A (LPXTG motif) [Listeria monocytogenes L312]
          Length = 800

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLTNL+   LSF G   
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 309 NISPLAGLTALTN 321


>gi|112959446|gb|ABI27250.1| internalin A [Listeria monocytogenes]
 gi|112959466|gb|ABI27260.1| internalin A [Listeria monocytogenes]
 gi|112959470|gb|ABI27262.1| internalin A [Listeria monocytogenes]
 gi|112959474|gb|ABI27264.1| internalin A [Listeria monocytogenes]
 gi|112959476|gb|ABI27265.1| internalin A [Listeria monocytogenes]
 gi|112959478|gb|ABI27266.1| internalin A [Listeria monocytogenes]
 gi|112959484|gb|ABI27269.1| internalin A [Listeria monocytogenes]
 gi|112959486|gb|ABI27270.1| internalin A [Listeria monocytogenes]
 gi|112959492|gb|ABI27273.1| internalin A [Listeria monocytogenes]
 gi|112959494|gb|ABI27274.1| internalin A [Listeria monocytogenes]
 gi|112959504|gb|ABI27279.1| internalin A [Listeria monocytogenes]
 gi|112959516|gb|ABI27285.1| internalin A [Listeria monocytogenes]
 gi|112959532|gb|ABI27293.1| internalin A [Listeria monocytogenes]
 gi|112959534|gb|ABI27294.1| internalin A [Listeria monocytogenes]
 gi|112959540|gb|ABI27297.1| internalin A [Listeria monocytogenes]
 gi|112959544|gb|ABI27299.1| internalin A [Listeria monocytogenes]
 gi|112959550|gb|ABI27302.1| internalin A [Listeria monocytogenes]
 gi|112959554|gb|ABI27304.1| internalin A [Listeria monocytogenes]
 gi|112959558|gb|ABI27306.1| internalin A [Listeria monocytogenes]
 gi|112959560|gb|ABI27307.1| internalin A [Listeria monocytogenes]
          Length = 737

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 35  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 89  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 247

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 363

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 364 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 27  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 83  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 135

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 246

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 247 ISPLAGLTALTN 258


>gi|171912739|ref|ZP_02928209.1| Leucine-rich repeat [Verrucomicrobium spinosum DSM 4136]
          Length = 443

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 128/425 (30%), Positives = 194/425 (45%), Gaps = 61/425 (14%)

Query: 20  LTEVSLEAFRDCALQDLCLG-QYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK 78
           L EV LE      L+ L LG  Y     KW     +   S  +    G+    S L HL 
Sbjct: 34  LDEVPLEVAELSHLRQLSLGWNYSPSAKKW-----NPDRSFFN---PGAMSNLSELAHLP 85

Query: 79  -DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
            +  +L++  FN C  +   G   LR L NL S S+ RN       ++  + L  L  L+
Sbjct: 86  LEWLDLRATGFNNCAALE--GFSALRSL-NL-SHSYVRN-------IEPLSALSQLQCLE 134

Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD--- 194
           L  C      + + K L +L +L        + SD++PL+ L  L+ L I  +KVTD   
Sbjct: 135 L--C---QTQVTDFKPLQRLGALQQLDLYSTSVSDLEPLAALHALQQLNICSTKVTDLEP 189

Query: 195 --------------SGIAYLKGLQKLTLL-NLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
                         +G+  L  L K+T L  LE        LD+L+ L  L  L+L+  +
Sbjct: 190 LAGLSSLRQFNFSFTGVTELDPLAKITTLQQLEFRLAPIFDLDALAGLRELQKLDLSTTE 249

Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
           + D   E  S +G+L+ L      ++D  L  L GL+ L  L+L  C      +  L GL
Sbjct: 250 VRD--LEPLSGLGALQKLYFNHTAVSD--LGPLAGLSALRKLDL-RCARRVTDIGPLAGL 304

Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
             L+ L L+ TQV  + L  L+ L NL+ ++LS T +SD  L  L  L++L+SL L + Q
Sbjct: 305 HALQRLILASTQV--TDLTPLTELRNLQHLDLSRTKVSD--LSPLTSLTALRSLGLTSTQ 360

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD----AGVKH 415
           ++D  LA L +   L  L L   +++D G   +    +L+ L +    +TD    AG+  
Sbjct: 361 VSD--LAPLAAYRDLQRLFLDSTQVSDLGP--VAGMNSLQELYVSHTSVTDLGPLAGLTE 416

Query: 416 IKDLS 420
           +K LS
Sbjct: 417 LKRLS 421



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 96/300 (32%), Positives = 142/300 (47%), Gaps = 50/300 (16%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           +L  +++  + VTD  L  L   S+L+  +F+F       G+  L  L+ +T+L      
Sbjct: 173 ALQQLNICSTKVTD--LEPLAGLSSLRQFNFSFT------GVTELDPLAKITTLQQLEFR 224

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
                 + A AGL  L KLDL   T +   L  L GL  L+ L   + N    SD+ PL+
Sbjct: 225 LAPIFDLDALAGLRELQKLDLS-TTEVRD-LEPLSGLGALQKL---YFNHTAVSDLGPLA 279

Query: 178 GLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           GL+ L+ L + C+ +VTD  I  L GL  L  L L    VT   L  L+ L +L +L+L+
Sbjct: 280 GLSALRKLDLRCARRVTD--IGPLAGLHALQRLILASTQVTD--LTPLTELRNLQHLDLS 335

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
           R ++SD                          L  L  LT L SL L S  + D  L  L
Sbjct: 336 RTKVSD--------------------------LSPLTSLTALRSLGLTSTQVSD--LAPL 367

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
               +L+ L L  TQV  S L  ++G+ +L+ + +S T ++D  L  LAGL+ LK L++D
Sbjct: 368 AAYRDLQRLFLDSTQV--SDLGPVAGMNSLQELYVSHTSVTD--LGPLAGLTELKRLSVD 423



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 101/208 (48%), Gaps = 20/208 (9%)

Query: 82  NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
            LQ LD +   ++ D  LE L GL  L  L F   N      +   AGL  L KLDL RC
Sbjct: 239 ELQKLDLS-TTEVRD--LEPLSGLGALQKLYF---NHTAVSDLGPLAGLSALRKLDL-RC 291

Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYL 200
            R    +  L GL  L+ L +        +D+ PL+ L NL+ L +S +KV+D S +  L
Sbjct: 292 ARRVTDIGPLAGLHALQRLILASTQV---TDLTPLTELRNLQHLDLSRTKVSDLSPLTSL 348

Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
             L+ L L + +      + L  L+A   L  L L+  Q+SD G    + + SL+ L + 
Sbjct: 349 TALRSLGLTSTQ-----VSDLAPLAAYRDLQRLFLDSTQVSDLG--PVAGMNSLQELYVS 401

Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGI 288
              +TD  L  L GLT L+ L++D C +
Sbjct: 402 HTSVTD--LGPLAGLTELKRLSVDECAV 427


>gi|284800720|ref|YP_003412585.1| Internalin A [Listeria monocytogenes 08-5578]
 gi|284993906|ref|YP_003415674.1| Internalin A [Listeria monocytogenes 08-5923]
 gi|130774827|gb|ABO32426.1| InlA [Listeria monocytogenes]
 gi|167862038|gb|ACA05718.1| InlA [Listeria monocytogenes]
 gi|194326145|emb|CAQ77231.1| internalin A [Listeria monocytogenes]
 gi|194326165|emb|CAQ77241.1| internalin A [Listeria monocytogenes]
 gi|284056282|gb|ADB67223.1| Internalin A [Listeria monocytogenes 08-5578]
 gi|284059373|gb|ADB70312.1| Internalin A [Listeria monocytogenes 08-5923]
 gi|298359730|gb|ADI77444.1| internalin A [Listeria monocytogenes]
 gi|298359786|gb|ADI77472.1| internalin A [Listeria monocytogenes]
 gi|298359904|gb|ADI77531.1| internalin A [Listeria monocytogenes]
 gi|298359978|gb|ADI77568.1| internalin A [Listeria monocytogenes]
 gi|298360068|gb|ADI77613.1| internalin A [Listeria monocytogenes]
 gi|298360228|gb|ADI77693.1| internalin A [Listeria monocytogenes]
 gi|298360452|gb|ADI77805.1| internalin A [Listeria monocytogenes]
 gi|298360556|gb|ADI77857.1| internalin A [Listeria monocytogenes]
 gi|298360576|gb|ADI77867.1| internalin A [Listeria monocytogenes]
 gi|298360600|gb|ADI77879.1| internalin A [Listeria monocytogenes]
 gi|298360678|gb|ADI77918.1| internalin A [Listeria monocytogenes]
 gi|443428872|gb|AGC92235.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 123/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|298359924|gb|ADI77541.1| internalin A [Listeria monocytogenes]
 gi|298359926|gb|ADI77542.1| internalin A [Listeria monocytogenes]
 gi|298360172|gb|ADI77665.1| internalin A [Listeria monocytogenes]
 gi|298360388|gb|ADI77773.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLTNL+   LSF G   
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 309 NISPLAGLTALTN 321


>gi|254825753|ref|ZP_05230754.1| internalin A [Listeria monocytogenes FSL J1-194]
 gi|255521302|ref|ZP_05388539.1| internalin A [Listeria monocytogenes FSL J1-175]
 gi|130774771|gb|ABO32400.1| InlA [Listeria monocytogenes]
 gi|130774777|gb|ABO32403.1| InlA [Listeria monocytogenes]
 gi|130774779|gb|ABO32404.1| InlA [Listeria monocytogenes]
 gi|150371874|dbj|BAF65726.1| internalin A [Listeria monocytogenes]
 gi|150371876|dbj|BAF65727.1| internalin A [Listeria monocytogenes]
 gi|223006790|gb|ACM69352.1| internalin A [Listeria monocytogenes]
 gi|290350838|dbj|BAI78340.1| internalin A [Listeria monocytogenes]
 gi|293594997|gb|EFG02758.1| internalin A [Listeria monocytogenes FSL J1-194]
 gi|298359742|gb|ADI77450.1| internalin A [Listeria monocytogenes]
 gi|298359744|gb|ADI77451.1| internalin A [Listeria monocytogenes]
 gi|298359756|gb|ADI77457.1| internalin A [Listeria monocytogenes]
 gi|298359790|gb|ADI77474.1| internalin A [Listeria monocytogenes]
 gi|298359872|gb|ADI77515.1| internalin A [Listeria monocytogenes]
 gi|298359880|gb|ADI77519.1| internalin A [Listeria monocytogenes]
 gi|298359942|gb|ADI77550.1| internalin A [Listeria monocytogenes]
 gi|298359946|gb|ADI77552.1| internalin A [Listeria monocytogenes]
 gi|298360032|gb|ADI77595.1| internalin A [Listeria monocytogenes]
 gi|298360064|gb|ADI77611.1| internalin A [Listeria monocytogenes]
 gi|298360114|gb|ADI77636.1| internalin A [Listeria monocytogenes]
 gi|298360202|gb|ADI77680.1| internalin A [Listeria monocytogenes]
 gi|298360282|gb|ADI77720.1| internalin A [Listeria monocytogenes]
 gi|298360284|gb|ADI77721.1| internalin A [Listeria monocytogenes]
 gi|298360314|gb|ADI77736.1| internalin A [Listeria monocytogenes]
 gi|298360330|gb|ADI77744.1| internalin A [Listeria monocytogenes]
 gi|298360346|gb|ADI77752.1| internalin A [Listeria monocytogenes]
 gi|298360410|gb|ADI77784.1| internalin A [Listeria monocytogenes]
 gi|298360420|gb|ADI77789.1| internalin A [Listeria monocytogenes]
 gi|298360440|gb|ADI77799.1| internalin A [Listeria monocytogenes]
 gi|298360454|gb|ADI77806.1| internalin A [Listeria monocytogenes]
 gi|298360470|gb|ADI77814.1| internalin A [Listeria monocytogenes]
 gi|298360494|gb|ADI77826.1| internalin A [Listeria monocytogenes]
 gi|298360506|gb|ADI77832.1| internalin A [Listeria monocytogenes]
 gi|298360604|gb|ADI77881.1| internalin A [Listeria monocytogenes]
 gi|298360610|gb|ADI77884.1| internalin A [Listeria monocytogenes]
 gi|298360612|gb|ADI77885.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLTNL+   LSF G   
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 309 NISPLAGLTALTN 321


>gi|298360360|gb|ADI77759.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLTNL+   LSF G   
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 309 NISPLAGLTALTN 321


>gi|130774769|gb|ABO32399.1| InlA [Listeria monocytogenes]
 gi|130774773|gb|ABO32401.1| InlA [Listeria monocytogenes]
 gi|167861932|gb|ACA05665.1| InlA [Listeria monocytogenes]
 gi|167861992|gb|ACA05695.1| InlA [Listeria monocytogenes]
 gi|167861994|gb|ACA05696.1| InlA [Listeria monocytogenes]
 gi|167861998|gb|ACA05698.1| InlA [Listeria monocytogenes]
 gi|167862004|gb|ACA05701.1| InlA [Listeria monocytogenes]
 gi|167862034|gb|ACA05716.1| InlA [Listeria monocytogenes]
 gi|194326169|emb|CAQ77243.1| internalin A [Listeria monocytogenes]
 gi|298359894|gb|ADI77526.1| internalin A [Listeria monocytogenes]
 gi|298360034|gb|ADI77596.1| internalin A [Listeria monocytogenes]
 gi|298360110|gb|ADI77634.1| internalin A [Listeria monocytogenes]
 gi|298360112|gb|ADI77635.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 123/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLT+L+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|254854324|ref|ZP_05243672.1| internalin A [Listeria monocytogenes FSL R2-503]
 gi|300766414|ref|ZP_07076370.1| internalin A precursor [Listeria monocytogenes FSL N1-017]
 gi|404279991|ref|YP_006680889.1| internalin A [Listeria monocytogenes SLCC2755]
 gi|404285805|ref|YP_006692391.1| internalin A [Listeria monocytogenes serotype 7 str. SLCC2482]
 gi|405754532|ref|YP_006677996.1| internalin A [Listeria monocytogenes SLCC2540]
 gi|130774761|gb|ABO32395.1| InlA [Listeria monocytogenes]
 gi|130774765|gb|ABO32397.1| InlA [Listeria monocytogenes]
 gi|130774775|gb|ABO32402.1| InlA [Listeria monocytogenes]
 gi|150371872|dbj|BAF65725.1| internalin A [Listeria monocytogenes]
 gi|150371878|dbj|BAF65728.1| internalin A [Listeria monocytogenes]
 gi|150371880|dbj|BAF65729.1| internalin A [Listeria monocytogenes]
 gi|150371882|dbj|BAF65730.1| internalin A [Listeria monocytogenes]
 gi|150371884|dbj|BAF65731.1| internalin A [Listeria monocytogenes]
 gi|150371886|dbj|BAF65732.1| internalin A [Listeria monocytogenes]
 gi|167861936|gb|ACA05667.1| InlA [Listeria monocytogenes]
 gi|167861950|gb|ACA05674.1| InlA [Listeria monocytogenes]
 gi|167861974|gb|ACA05686.1| InlA [Listeria monocytogenes]
 gi|167861990|gb|ACA05694.1| InlA [Listeria monocytogenes]
 gi|194239386|emb|CAQ76833.1| internalin A [Listeria monocytogenes]
 gi|194239390|emb|CAQ76835.1| internalin A [Listeria monocytogenes]
 gi|194239398|emb|CAQ76839.1| internalin A [Listeria monocytogenes]
 gi|194326159|emb|CAQ77238.1| internalin A [Listeria monocytogenes]
 gi|223006782|gb|ACM69348.1| internalin A [Listeria monocytogenes]
 gi|258607720|gb|EEW20328.1| internalin A [Listeria monocytogenes FSL R2-503]
 gi|290350822|dbj|BAI78332.1| internalin A [Listeria monocytogenes]
 gi|290350824|dbj|BAI78333.1| internalin A [Listeria monocytogenes]
 gi|298359734|gb|ADI77446.1| internalin A [Listeria monocytogenes]
 gi|298359740|gb|ADI77449.1| internalin A [Listeria monocytogenes]
 gi|298359774|gb|ADI77466.1| internalin A [Listeria monocytogenes]
 gi|298359822|gb|ADI77490.1| internalin A [Listeria monocytogenes]
 gi|298359826|gb|ADI77492.1| internalin A [Listeria monocytogenes]
 gi|298359830|gb|ADI77494.1| internalin A [Listeria monocytogenes]
 gi|298359834|gb|ADI77496.1| internalin A [Listeria monocytogenes]
 gi|298359836|gb|ADI77497.1| internalin A [Listeria monocytogenes]
 gi|298359846|gb|ADI77502.1| internalin A [Listeria monocytogenes]
 gi|298359848|gb|ADI77503.1| internalin A [Listeria monocytogenes]
 gi|298359854|gb|ADI77506.1| internalin A [Listeria monocytogenes]
 gi|298359856|gb|ADI77507.1| internalin A [Listeria monocytogenes]
 gi|298359868|gb|ADI77513.1| internalin A [Listeria monocytogenes]
 gi|298359870|gb|ADI77514.1| internalin A [Listeria monocytogenes]
 gi|298359888|gb|ADI77523.1| internalin A [Listeria monocytogenes]
 gi|298359920|gb|ADI77539.1| internalin A [Listeria monocytogenes]
 gi|298359954|gb|ADI77556.1| internalin A [Listeria monocytogenes]
 gi|298359968|gb|ADI77563.1| internalin A [Listeria monocytogenes]
 gi|298359972|gb|ADI77565.1| internalin A [Listeria monocytogenes]
 gi|298359984|gb|ADI77571.1| internalin A [Listeria monocytogenes]
 gi|298359998|gb|ADI77578.1| internalin A [Listeria monocytogenes]
 gi|298360002|gb|ADI77580.1| internalin A [Listeria monocytogenes]
 gi|298360006|gb|ADI77582.1| internalin A [Listeria monocytogenes]
 gi|298360040|gb|ADI77599.1| internalin A [Listeria monocytogenes]
 gi|298360042|gb|ADI77600.1| internalin A [Listeria monocytogenes]
 gi|298360044|gb|ADI77601.1| internalin A [Listeria monocytogenes]
 gi|298360050|gb|ADI77604.1| internalin A [Listeria monocytogenes]
 gi|298360080|gb|ADI77619.1| internalin A [Listeria monocytogenes]
 gi|298360090|gb|ADI77624.1| internalin A [Listeria monocytogenes]
 gi|298360100|gb|ADI77629.1| internalin A [Listeria monocytogenes]
 gi|298360126|gb|ADI77642.1| internalin A [Listeria monocytogenes]
 gi|298360150|gb|ADI77654.1| internalin A [Listeria monocytogenes]
 gi|298360156|gb|ADI77657.1| internalin A [Listeria monocytogenes]
 gi|298360166|gb|ADI77662.1| internalin A [Listeria monocytogenes]
 gi|298360188|gb|ADI77673.1| internalin A [Listeria monocytogenes]
 gi|298360190|gb|ADI77674.1| internalin A [Listeria monocytogenes]
 gi|298360194|gb|ADI77676.1| internalin A [Listeria monocytogenes]
 gi|298360220|gb|ADI77689.1| internalin A [Listeria monocytogenes]
 gi|298360222|gb|ADI77690.1| internalin A [Listeria monocytogenes]
 gi|298360238|gb|ADI77698.1| internalin A [Listeria monocytogenes]
 gi|298360246|gb|ADI77702.1| internalin A [Listeria monocytogenes]
 gi|298360260|gb|ADI77709.1| internalin A [Listeria monocytogenes]
 gi|298360264|gb|ADI77711.1| internalin A [Listeria monocytogenes]
 gi|298360266|gb|ADI77712.1| internalin A [Listeria monocytogenes]
 gi|298360294|gb|ADI77726.1| internalin A [Listeria monocytogenes]
 gi|298360298|gb|ADI77728.1| internalin A [Listeria monocytogenes]
 gi|298360312|gb|ADI77735.1| internalin A [Listeria monocytogenes]
 gi|298360318|gb|ADI77738.1| internalin A [Listeria monocytogenes]
 gi|298360356|gb|ADI77757.1| internalin A [Listeria monocytogenes]
 gi|298360368|gb|ADI77763.1| internalin A [Listeria monocytogenes]
 gi|298360396|gb|ADI77777.1| internalin A [Listeria monocytogenes]
 gi|298360398|gb|ADI77778.1| internalin A [Listeria monocytogenes]
 gi|298360400|gb|ADI77779.1| internalin A [Listeria monocytogenes]
 gi|298360428|gb|ADI77793.1| internalin A [Listeria monocytogenes]
 gi|298360434|gb|ADI77796.1| internalin A [Listeria monocytogenes]
 gi|298360448|gb|ADI77803.1| internalin A [Listeria monocytogenes]
 gi|298360462|gb|ADI77810.1| internalin A [Listeria monocytogenes]
 gi|298360498|gb|ADI77828.1| internalin A [Listeria monocytogenes]
 gi|298360502|gb|ADI77830.1| internalin A [Listeria monocytogenes]
 gi|298360510|gb|ADI77834.1| internalin A [Listeria monocytogenes]
 gi|298360514|gb|ADI77836.1| internalin A [Listeria monocytogenes]
 gi|298360558|gb|ADI77858.1| internalin A [Listeria monocytogenes]
 gi|298360560|gb|ADI77859.1| internalin A [Listeria monocytogenes]
 gi|298360566|gb|ADI77862.1| internalin A [Listeria monocytogenes]
 gi|298360586|gb|ADI77872.1| internalin A [Listeria monocytogenes]
 gi|298360614|gb|ADI77886.1| internalin A [Listeria monocytogenes]
 gi|298360630|gb|ADI77894.1| internalin A [Listeria monocytogenes]
 gi|298360638|gb|ADI77898.1| internalin A [Listeria monocytogenes]
 gi|298360652|gb|ADI77905.1| internalin A [Listeria monocytogenes]
 gi|298360680|gb|ADI77919.1| internalin A [Listeria monocytogenes]
 gi|298360682|gb|ADI77920.1| internalin A [Listeria monocytogenes]
 gi|298360694|gb|ADI77926.1| internalin A [Listeria monocytogenes]
 gi|298360704|gb|ADI77931.1| internalin A [Listeria monocytogenes]
 gi|298360706|gb|ADI77932.1| internalin A [Listeria monocytogenes]
 gi|300512880|gb|EFK39971.1| internalin A precursor [Listeria monocytogenes FSL N1-017]
 gi|302034315|gb|ADK92311.1| internalin A [Listeria monocytogenes]
 gi|302034317|gb|ADK92312.1| internalin A [Listeria monocytogenes]
 gi|404223732|emb|CBY75094.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2540]
 gi|404226626|emb|CBY48031.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2755]
 gi|404244734|emb|CBY02959.1| internalin A (LPXTG motif) [Listeria monocytogenes serotype 7 str.
           SLCC2482]
          Length = 800

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLTNL+   LSF G   
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 309 NISPLAGLTALTN 321


>gi|322952090|gb|ADX21044.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|130774755|gb|ABO32392.1| InlA [Listeria monocytogenes]
 gi|130774767|gb|ABO32398.1| InlA [Listeria monocytogenes]
 gi|298359732|gb|ADI77445.1| internalin A [Listeria monocytogenes]
 gi|298360004|gb|ADI77581.1| internalin A [Listeria monocytogenes]
 gi|298360478|gb|ADI77818.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLTNL+   LSF G   
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 309 NISPLAGLTALTN 321


>gi|112959552|gb|ABI27303.1| internalin A [Listeria monocytogenes]
 gi|112959556|gb|ABI27305.1| internalin A [Listeria monocytogenes]
          Length = 737

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 35  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 89  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 247

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 363

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 364 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 27  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 83  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 135

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 246

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 247 ISPLAGLTALTN 258


>gi|294358389|gb|ADE73847.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|290980460|ref|XP_002672950.1| predicted protein [Naegleria gruberi]
 gi|284086530|gb|EFC40206.1| predicted protein [Naegleria gruberi]
          Length = 331

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 105/210 (50%), Gaps = 4/210 (1%)

Query: 244 GCEKFSKIGSLKVL---NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           G EK   I  +K L   ++ +N I  E    +  +  L SLN++   IG EG   ++G+ 
Sbjct: 121 GIEKLKFISEMKQLISLDISYNRIDGEGAKLISEMKQLTSLNINGNVIGGEGAKFISGMK 180

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            L  L + + ++G  G +++S +  L S+++    I D  ++ ++ +  L SLN+    I
Sbjct: 181 QLTSLYIYNNRIGGEGAKYISEMKQLISLDIGGNQIGDEEVKLISEMKQLTSLNIANNVI 240

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
            D G   +  +  LT L++    I D GA Y+   K L SL I    + +AG K I ++ 
Sbjct: 241 GDAGAKFIGDMKQLTSLNISYNVIGDEGAKYINEMKQLTSLNITRNEIGNAGAKFISEMK 300

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
            LT L+++ N  +  +  + IS +  L+SL
Sbjct: 301 QLTSLDIAGN-RIGGEGAKFISEMKQLISL 329



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 98/202 (48%)

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
           L  +S +  L  L+++  ++  +G +  S++  L  LN+  N I  E    + G+  L S
Sbjct: 125 LKFISEMKQLISLDISYNRIDGEGAKLISEMKQLTSLNINGNVIGGEGAKFISGMKQLTS 184

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           L + +  IG EG   ++ +  L  L++   Q+G   ++ +S +  L S+N++   I D  
Sbjct: 185 LYIYNNRIGGEGAKYISEMKQLISLDIGGNQIGDEEVKLISEMKQLTSLNIANNVIGDAG 244

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
            + +  +  L SLN+    I D G   +  +  LT L++    I ++GA ++   K L S
Sbjct: 245 AKFIGDMKQLTSLNISYNVIGDEGAKYINEMKQLTSLNITRNEIGNAGAKFISEMKQLTS 304

Query: 401 LEICGGGLTDAGVKHIKDLSSL 422
           L+I G  +   G K I ++  L
Sbjct: 305 LDIAGNRIGGEGAKFISEMKQL 326



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 106/229 (46%), Gaps = 24/229 (10%)

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           +K +S +  L SL IS +++   G   +  +++LT LN+ G  +       +S +  L  
Sbjct: 125 LKFISEMKQLISLDISYNRIDGEGAKLISEMKQLTSLNINGNVIGGEGAKFISGMKQLTS 184

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           L +   ++  +G +  S++  L  L++G N+I DE +  +  +  L SLN+ +  IGD  
Sbjct: 185 LYIYNNRIGGEGAKYISEMKQLISLDIGGNQIGDEEVKLISEMKQLTSLNIANNVIGD-- 242

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
                                 +G + +  +  L S+N+S+  I D   + +  +  L S
Sbjct: 243 ----------------------AGAKFIGDMKQLTSLNISYNVIGDEGAKYINEMKQLTS 280

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
           LN+   +I + G   ++ +  LT LD+ G RI   GA ++   K L SL
Sbjct: 281 LNITRNEIGNAGAKFISEMKQLTSLDIAGNRIGGEGAKFISEMKQLISL 329



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 1/181 (0%)

Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
           G E L  ++ +  L  L++S  ++   G + +S +  L S+N++   I     + ++G+ 
Sbjct: 121 GIEKLKFISEMKQLISLDISYNRIDGEGAKLISEMKQLTSLNINGNVIGGEGAKFISGMK 180

Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
            L SL +   +I   G   ++ +  L  LD+ G +I D     +   K L SL I    +
Sbjct: 181 QLTSLYIYNNRIGGEGAKYISEMKQLISLDIGGNQIGDEEVKLISEMKQLTSLNIANNVI 240

Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHA 468
            DAG K I D+  LT LN+S N  + D+  + I+ +  L SLN++ + I +AG + ++  
Sbjct: 241 GDAGAKFIGDMKQLTSLNISYNV-IGDEGAKYINEMKQLTSLNITRNEIGNAGAKFISEM 299

Query: 469 R 469
           +
Sbjct: 300 K 300



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 73/140 (52%), Gaps = 4/140 (2%)

Query: 329 INLSFTGISDGSLRKLAGLSSLK---SLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           +NL F G   G + KL  +S +K   SL++   +I   G   ++ +  LT L++ G  I 
Sbjct: 110 VNLKFLGYLLGGIEKLKFISEMKQLISLDISYNRIDGEGAKLISEMKQLTSLNINGNVIG 169

Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
             GA ++   K L SL I    +   G K+I ++  L  L++  N  + D+ ++LIS + 
Sbjct: 170 GEGAKFISGMKQLTSLYIYNNRIGGEGAKYISEMKQLISLDIGGN-QIGDEEVKLISEMK 228

Query: 446 GLVSLNVSNSRITSAGLRHL 465
            L SLN++N+ I  AG + +
Sbjct: 229 QLTSLNIANNVIGDAGAKFI 248



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 103/211 (48%), Gaps = 4/211 (1%)

Query: 146 GGLVNLKGLMKLE---SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
           GG+  LK + +++   SL+I + N I     K +S +  L SL I+ + +   G  ++ G
Sbjct: 120 GGIEKLKFISEMKQLISLDISY-NRIDGEGAKLISEMKQLTSLNINGNVIGGEGAKFISG 178

Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
           +++LT L +    +       +S +  L  L++   Q+ D+  +  S++  L  LN+  N
Sbjct: 179 MKQLTSLYIYNNRIGGEGAKYISEMKQLISLDIGGNQIGDEEVKLISEMKQLTSLNIANN 238

Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
            I D     +  +  L SLN+    IGDEG   +  +  L  L ++  ++G++G + +S 
Sbjct: 239 VIGDAGAKFIGDMKQLTSLNISYNVIGDEGAKYINEMKQLTSLNITRNEIGNAGAKFISE 298

Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
           +  L S++++   I     + ++ +  L SL
Sbjct: 299 MKQLTSLDIAGNRIGGEGAKFISEMKQLISL 329


>gi|112959508|gb|ABI27281.1| internalin A [Listeria monocytogenes]
          Length = 737

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 35  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 89  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 140

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 247

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 363

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 364 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 29  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 81

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 82  TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 136

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 137 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 194

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 195 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 249

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 250 LAGLTALTN 258


>gi|112959506|gb|ABI27280.1| internalin A [Listeria monocytogenes]
          Length = 737

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 35  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 89  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 247

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 363

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 364 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 27  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLTNL+   LSF G   
Sbjct: 83  GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 134

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 135 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 190

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 191 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 245

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 246 NISPLAGLTALTN 258


>gi|85679234|gb|ABC72033.1| InlA [Listeria monocytogenes]
          Length = 794

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 121/393 (30%), Positives = 182/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 97  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 150

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 202

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 255

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 256 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 309

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS------------- 340
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD S             
Sbjct: 310 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSNLTKLQRLFF 367

Query: 341 -------LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                  +  LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 368 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 425

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 426 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 89  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 144

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLT+L+   LSF G    
Sbjct: 145 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 197

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 198 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 253

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 254 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 308

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 309 ISPLAGLTALTN 320


>gi|298359892|gb|ADI77525.1| internalin A [Listeria monocytogenes]
 gi|298360422|gb|ADI77790.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLTNL+   LSF G   
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 309 NISPLAGLTALTN 321


>gi|194239378|emb|CAQ76829.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 123/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNKISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|322952085|gb|ADX21042.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|300704108|ref|YP_003745710.1| leucine-rich-repeat type III effector protein (gala4) [Ralstonia
           solanacearum CFBP2957]
 gi|299071771|emb|CBJ43095.1| leucine-rich-repeat type III effector protein (GALA4) [Ralstonia
           solanacearum CFBP2957]
          Length = 461

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 147/318 (46%), Gaps = 10/318 (3%)

Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CS-KVTDSGIAYLKGL 203
           GG+ +      L  L +      TD+D++ L    +L+ L +S C   +T  GIA+L  L
Sbjct: 113 GGIPSPDDYPALRKLTL--VGPFTDADLQRLP--PSLRELDLSLCEGPITAVGIAHLLAL 168

Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
             L  L++ GC + A     L+   +L  LNL R  + D G   F++   L  LN+  N 
Sbjct: 169 -PLDRLDVSGCELNADSARLLAGHPTLTTLNLRRNAIDDAGVAAFARNKKLTTLNVSSNG 227

Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
           I    +  L   T + +L++ +  IGDEG + L     L  L+ SD  +G  G + L+  
Sbjct: 228 IGPAGVRALAANTTITTLDISNNEIGDEGALALASNTTLTRLDASDCGIGPEGTQALATS 287

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
           T L S++LS+  I    +  L   ++L++L+    ++       L + T LT L+L    
Sbjct: 288 TTLTSLDLSYNAIEAEGVEALGRNTTLRTLHACGNELGHREAELLAANTTLTVLNLSSNA 347

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
           I ++GA        L  L +   G+    V    D   LT L+LS N  + D   ++++ 
Sbjct: 348 IGNAGARAFGANTTLVELNLSNNGIER--VPEWADNGKLTTLDLSNN-QIGDTAAQVLAA 404

Query: 444 LTGLVSLNVSNSRITSAG 461
              L +LNV ++RI   G
Sbjct: 405 SRTLTTLNVGSNRIGDTG 422



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 150/337 (44%), Gaps = 14/337 (4%)

Query: 70  TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA----ITAQGMK 125
           TD+ L  L    +L+ LD + C    +G +  + G+++L +L   R +     + A   +
Sbjct: 134 TDADLQRLP--PSLRELDLSLC----EGPITAV-GIAHLLALPLDRLDVSGCELNADSAR 186

Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
             AG   L  L+L R      G+       KL +LN+   N I  + ++ L+  T + +L
Sbjct: 187 LLAGHPTLTTLNLRRNAIDDAGVAAFARNKKLTTLNVS-SNGIGPAGVRALAANTTITTL 245

Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
            IS +++ D G   L     LT L+   C +      +L+   +L  L+L+   +  +G 
Sbjct: 246 DISNNEIGDEGALALASNTTLTRLDASDCGIGPEGTQALATSTTLTSLDLSYNAIEAEGV 305

Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
           E   +  +L+ L+   NE+       L   T L  LNL S  IG+ G        N   +
Sbjct: 306 EALGRNTTLRTLHACGNELGHREAELLAANTTLTVLNLSSNAIGNAGARAFG--ANTTLV 363

Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
           EL+ +  G   +   +    L +++LS   I D + + LA   +L +LN+ + +I DTG 
Sbjct: 364 ELNLSNNGIERVPEWADNGKLTTLDLSNNQIGDTAAQVLAASRTLTTLNVGSNRIGDTGA 423

Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
            AL   T LT L++   RI  +G   L     L  LE
Sbjct: 424 CALAGNTTLTTLNVSLNRIGKAGMLALAANTTLEKLE 460



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 118/268 (44%), Gaps = 21/268 (7%)

Query: 203 LQKLTLLNLEGC-----PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
           +Q+LT+ N +G      P     L  L+ +G     +L R               SL+ L
Sbjct: 101 IQQLTITNRKGSGGIPSPDDYPALRKLTLVGPFTDADLQRLP------------PSLREL 148

Query: 258 NLGFNE--ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
           +L   E  IT   + HL  L  L+ L++  C +  +    L G   L  L L    +  +
Sbjct: 149 DLSLCEGPITAVGIAHLLALP-LDRLDVSGCELNADSARLLAGHPTLTTLNLRRNAIDDA 207

Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
           G+   +    L ++N+S  GI    +R LA  +++ +L++   +I D G  AL S T LT
Sbjct: 208 GVAAFARNKKLTTLNVSSNGIGPAGVRALAANTTITTLDISNNEIGDEGALALASNTTLT 267

Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
            LD     I   G   L     L SL++    +   GV+ +   ++L  L+   N  L  
Sbjct: 268 RLDASDCGIGPEGTQALATSTTLTSLDLSYNAIEAEGVEALGRNTTLRTLHACGN-ELGH 326

Query: 436 KTLELISGLTGLVSLNVSNSRITSAGLR 463
           +  EL++  T L  LN+S++ I +AG R
Sbjct: 327 REAELLAANTTLTVLNLSSNAIGNAGAR 354



 Score = 45.8 bits (107), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 103/252 (40%), Gaps = 33/252 (13%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           +++ ++D+S +++ D G + L   + L  LD + C  I   G + L   + LTSL     
Sbjct: 240 TTITTLDISNNEIGDEGALALASNTTLTRLDASDC-GIGPEGTQALATSTTLTSLDLSY- 297

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           NAI A+G++A     N     L  C                        N +   + + L
Sbjct: 298 NAIEAEGVEALG--RNTTLRTLHAC-----------------------GNELGHREAELL 332

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE--GCPVTAACLDSLSALGSLFYLN 234
           +  T L  L +S + + ++G         L  LNL   G        D+    G L  L+
Sbjct: 333 AANTTLTVLNLSSNAIGNAGARAFGANTTLVELNLSNNGIERVPEWADN----GKLTTLD 388

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           L+  Q+ D   +  +   +L  LN+G N I D     L G T L +LN+    IG  G++
Sbjct: 389 LSNNQIGDTAAQVLAASRTLTTLNVGSNRIGDTGACALAGNTTLTTLNVSLNRIGKAGML 448

Query: 295 NLTGLCNLKCLE 306
            L     L+ LE
Sbjct: 449 ALAANTTLEKLE 460


>gi|294358387|gb|ADE73846.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 183/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL+ L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLISLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T + L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQVGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 118/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLISLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321



 Score = 39.3 bits (90), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 41/139 (29%)

Query: 316 GLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSL 371
           G++ + G   L NL  IN S   ++D  +  L  L+ L  + ++  QI D T LA LT+L
Sbjct: 87  GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIADITPLANLTNL 144

Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
           TGLT   LF  +ITD     L+N  NL  LE+    ++D                     
Sbjct: 145 TGLT---LFNNQITDIDP--LKNLTNLNRLELSSNTISD--------------------- 178

Query: 432 NLTDKTLELISGLTGLVSL 450
                    IS L+GL+SL
Sbjct: 179 ---------ISALSGLISL 188


>gi|419761284|ref|ZP_14287540.1| internalin-A [Thermosipho africanus H17ap60334]
 gi|407513590|gb|EKF48487.1| internalin-A [Thermosipho africanus H17ap60334]
          Length = 598

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 92/272 (33%), Positives = 141/272 (51%), Gaps = 27/272 (9%)

Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGL---TNLKSLQISCSKVTDSGIAYLKGLQK 205
           + ++ + +LE+L++ +      S ++ LSGL    NL+SL +S S+V D  ++ L  L K
Sbjct: 41  ITVQDMWELENLSLSF------SSVRDLSGLEYAVNLESLDLSNSEVPD--LSPLAKLPK 92

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
           L  L+L GC +       L  L +L  L L+  ++SD      +K   L++L+L  N I+
Sbjct: 93  LVKLDLSGCGIEDLS--LLPNLPNLISLRLSGNEISD--ISPLTKFSKLRMLDLSSNIIS 148

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
           D  +  LK L NLE LNL    I D  +  L+ L  LK L+LS  ++  S +  L+ LTN
Sbjct: 149 D--ISPLKDLPNLEELNLSVNKISD--ITPLSNLTKLKRLDLSYNRI--SDISSLTNLTN 202

Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           LE + LS+  ISD S   LA L +L  L+L   +I+D  ++ L  LT L  LDL    I+
Sbjct: 203 LEELVLSYNEISDIS--PLANLPNLAGLDLSNNEISD--ISPLKDLTNLELLDLAENEIS 258

Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
           D   + L N  +LR L +         +  I+
Sbjct: 259 D--ISLLFNLTSLRELYVYPKDFKMKMIMFIE 288



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 122/256 (47%), Gaps = 25/256 (9%)

Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-S 195
           D++  T ++    NL+  ++ E+L I+    IT  DM        L++L +S S V D S
Sbjct: 328 DIDEETVVNFNDSNLEEAVR-EALKIEEDEDITVQDM------WELENLSLSFSSVRDLS 380

Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
           G+ Y   L+ L L N E        L  L+ L  L  L+L+ C + D        + +L 
Sbjct: 381 GLEYAVNLESLDLSNSE-----VPDLSPLAKLPKLVKLDLSGCGIED--LSLLPNLPNLI 433

Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
            L L  NEI+D  +  L   + L  L+L S  I D  +  L  L  L+ L+L   +V  S
Sbjct: 434 SLRLSGNEISD--ISPLTKFSKLRMLDLSSNIISD--ISPLAKLTKLRFLDLYANEV--S 487

Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
            +  L+ LT L  ++ S   ++D S   L  L+ L+ L L   +I D  ++ L++LT L 
Sbjct: 488 DVSPLAKLTKLRVLDFSQNKVNDIS--PLVKLTKLRVLELQYNKIND--ISPLSNLTNLI 543

Query: 376 HLDLFGARITDSGAAY 391
            LDL G +I+D    +
Sbjct: 544 GLDLTGNKISDISPLF 559



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 112/246 (45%), Gaps = 32/246 (13%)

Query: 75  IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
           I ++D   L++L  +F       GLE+     NL SL    +       +   A L  LV
Sbjct: 41  ITVQDMWELENLSLSFSSVRDLSGLEYA---VNLESLDLSNSEV---PDLSPLAKLPKLV 94

Query: 135 KLDLERC----------------TRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPLS 177
           KLDL  C                 R+ G  + ++  L K   L +   +    SD+ PL 
Sbjct: 95  KLDLSGCGIEDLSLLPNLPNLISLRLSGNEISDISPLTKFSKLRMLDLSSNIISDISPLK 154

Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
            L NL+ L +S +K++D  I  L  L KL  L+L    ++     SL+ L +L  L L+ 
Sbjct: 155 DLPNLEELNLSVNKISD--ITPLSNLTKLKRLDLSYNRISDIS--SLTNLTNLEELVLSY 210

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV-NL 296
            ++SD      + + +L  L+L  NEI+D  +  LK LTNLE L+L    I D  L+ NL
Sbjct: 211 NEISD--ISPLANLPNLAGLDLSNNEISD--ISPLKDLTNLELLDLAENEISDISLLFNL 266

Query: 297 TGLCNL 302
           T L  L
Sbjct: 267 TSLREL 272



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 149/346 (43%), Gaps = 74/346 (21%)

Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SG 196
           L+  + I   +  LK L  LE LN+   N I  SD+ PLS LT LK L +S ++++D S 
Sbjct: 140 LDLSSNIISDISPLKDLPNLEELNLS-VNKI--SDITPLSNLTKLKRLDLSYNRISDISS 196

Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
           +  L  L++L L   E   ++      L+ L +L  L+L+  ++SD        + +L++
Sbjct: 197 LTNLTNLEELVLSYNEISDISP-----LANLPNLAGLDLSNNEISD--ISPLKDLTNLEL 249

Query: 257 LNLGFNEITD-----------ECLVHLKGL-------------------------TNLES 280
           L+L  NEI+D           E  V+ K                              E 
Sbjct: 250 LDLAENEISDISLLFNLTSLRELYVYPKDFKMKMIMFIEKYEDVDEDIDYEDIDEDTFED 309

Query: 281 LNLDS------------CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
           ++LD+              I +E +VN     NL+       ++       +  +  LE+
Sbjct: 310 IDLDNDEYIDVDIDEYIEDIDEETVVNFND-SNLEEAVREALKIEEDEDITVQDMWELEN 368

Query: 329 INLSFTGISDGSLRKLAGLS---SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           ++LSF+     S+R L+GL    +L+SL+L   ++ D  L+ L  L  L  LDL G  I 
Sbjct: 369 LSLSFS-----SVRDLSGLEYAVNLESLDLSNSEVPD--LSPLAKLPKLVKLDLSGCGIE 421

Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
           D          NL SL + G  ++D  +  +   S L +L+LS N 
Sbjct: 422 DLSLLPNL--PNLISLRLSGNEISD--ISPLTKFSKLRMLDLSSNI 463



 Score = 45.1 bits (105), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 104/227 (45%), Gaps = 22/227 (9%)

Query: 75  IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
           I ++D   L++L  +F       GLE+     NL SL    +       +   A L  LV
Sbjct: 358 ITVQDMWELENLSLSFSSVRDLSGLEYA---VNLESLDLSNSEV---PDLSPLAKLPKLV 411

Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWC-NCITDSDMKPLSGLTNLKSLQISCSKVT 193
           KLDL  C    G             ++++   N I  SD+ PL+  + L+ L +S + ++
Sbjct: 412 KLDLSGC----GIEDLSLLPNLPNLISLRLSGNEI--SDISPLTKFSKLRMLDLSSNIIS 465

Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
           D  I+ L  L KL  L+L    V+      L+ L  L  L+ ++ +++D       K+  
Sbjct: 466 D--ISPLAKLTKLRFLDLYANEVSDVS--PLAKLTKLRVLDFSQNKVND--ISPLVKLTK 519

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGL 299
           L+VL L +N+I D  +  L  LTNL  L+L    I D   L +L+GL
Sbjct: 520 LRVLELQYNKIND--ISPLSNLTNLIGLDLTGNKISDISPLFSLSGL 564


>gi|302767392|ref|XP_002967116.1| hypothetical protein SELMODRAFT_87311 [Selaginella moellendorffii]
 gi|300165107|gb|EFJ31715.1| hypothetical protein SELMODRAFT_87311 [Selaginella moellendorffii]
          Length = 637

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 190/420 (45%), Gaps = 60/420 (14%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
           LQ + L    G++D  +  +AS    L ++D+S +++TD G+  L +  +L+ L+   C 
Sbjct: 171 LQVVVLKGCVGISDAGLCFLASNCKELTTIDVSYTEITDDGVRCLSNLPSLRVLNLAACS 230

Query: 93  QISDGGLEH------------LRGLSNL-------TSLSF---------RRNNAITAQGM 124
            + D GL               R ++N+        SL F         ++ + IT Q +
Sbjct: 231 NVGDAGLTRTSTSLLELDLSCCRSVTNVGISFLSKRSLQFLKLGFCSPVKKRSQITGQLL 290

Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKG--LMKLESLNIKWCNCITDSDMKPL-SGLTN 181
           +A   L  +  L L  C  I G  +   G   ++L  L++  C  +TDS M  +  G  N
Sbjct: 291 EAVGKLTQIQTLKLAGC-EIAGDGLRFVGSCCLQLSDLSLSKCRGVTDSGMASIFHGCKN 349

Query: 182 LKSLQISC----SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL----GSLFYL 233
           L+ L ++C    +++T   IA  +    L  L +E C +     +++  L      L  L
Sbjct: 350 LRKLDLTCCLDLTEITAYNIA--RSSAGLVSLKIEACRILTE--NNIPLLMERCSCLEEL 405

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCG-IGDE 291
           ++  C + D G E  +K   LK L LGF +++D  + H+ +  ++L  L+L   G +GD 
Sbjct: 406 DVTDCNIDDAGLECIAKCKFLKTLKLGFCKVSDNGIEHVGRNCSDLIELDLYRSGNVGDA 465

Query: 292 GLVNLTGLC------NLK-CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
           G+ ++   C      NL  C  ++D  + S  +  LS L  LE       G+     +KL
Sbjct: 466 GVASIAAGCRKLRILNLSYCPNITDASIVS--ISQLSHLQQLEIRGCKRVGLE----KKL 519

Query: 345 AGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
               +L  L+L    I D G+ ++      L  L+L   RI+++G   L N + L+++++
Sbjct: 520 PEFKNLVELDLKHCGIGDRGMTSIVYCFPNLQQLNLSYCRISNAGLVMLGNLRCLQNVKL 579



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 134/456 (29%), Positives = 202/456 (44%), Gaps = 89/456 (19%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLS--NLTSLSFRRNNAITAQGMKAFA---------- 128
           + ++SLD + CI+I+D  L  +  L+   L SL   R    T  G+ A A          
Sbjct: 65  TGIESLDLSSCIKITDEDLALVGELAGTRLRSLGLARMGGFTVAGIVALARNCSALVELD 124

Query: 129 ----------------GLINLVKLDLERCTRIH-GGLVNLK-GLMKLESLNIKWCNCITD 170
                            L +L KLDL  C  I   GL  L  G  KL+ + +K C  I+D
Sbjct: 125 LRCCNSLGDLELAAVCQLGSLRKLDLTGCYMISDAGLGCLAAGCKKLQVVVLKGCVGISD 184

Query: 171 SDMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALG 228
           + +  L S    L ++ +S +++TD G+  L  L  L +LNL  C  V  A L   S   
Sbjct: 185 AGLCFLASNCKELTTIDVSYTEITDDGVRCLSNLPSLRVLNLAACSNVGDAGLTRTST-- 242

Query: 229 SLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-------NEITDECLVHLKGLTNLES 280
           SL  L+L+ C+ +++ G    SK  SL+ L LGF       ++IT + L  +  LT +++
Sbjct: 243 SLLELDLSCCRSVTNVGISFLSK-RSLQFLKLGFCSPVKKRSQITGQLLEAVGKLTQIQT 301

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSD---------TQVGSSGLRHLSGLTNLESINL 331
           L L  C I  +GL    G C   CL+LSD         T  G + + H  G  NL  ++L
Sbjct: 302 LKLAGCEIAGDGL-RFVGSC---CLQLSDLSLSKCRGVTDSGMASIFH--GCKNLRKLDL 355

Query: 332 S----FTGISDGSL-RKLAGLSSLK-----------------------SLNLDARQITDT 363
           +     T I+  ++ R  AGL SLK                        L++    I D 
Sbjct: 356 TCCLDLTEITAYNIARSSAGLVSLKIEACRILTENNIPLLMERCSCLEELDVTDCNIDDA 415

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEIC-GGGLTDAGVKHIKD-LS 420
           GL  +     L  L L   +++D+G  ++ RN  +L  L++   G + DAGV  I     
Sbjct: 416 GLECIAKCKFLKTLKLGFCKVSDNGIEHVGRNCSDLIELDLYRSGNVGDAGVASIAAGCR 475

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
            L +LNLS   N+TD ++  IS L+ L  L +   +
Sbjct: 476 KLRILNLSYCPNITDASIVSISQLSHLQQLEIRGCK 511



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 115/246 (46%), Gaps = 38/246 (15%)

Query: 245 CEKFSKIG--SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
           C++F   G  S K + L  +E+    L    G+   ESL+L SC  I DE L  L G   
Sbjct: 35  CKRFYAAGAESQKTMRLFNSELLPRALARHTGI---ESLDLSSCIKITDEDLA-LVG--- 87

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLS-------------FTGISDGSLRKLAGLS 348
               EL+ T++ S GL  + G T    + L+                + D  L  +  L 
Sbjct: 88  ----ELAGTRLRSLGLARMGGFTVAGIVALARNCSALVELDLRCCNSLGDLELAAVCQLG 143

Query: 349 SLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR----ITDSGAAYL-RNFKNLRSLE 402
           SL+ L+L     I+D GL  L +  G   L +   +    I+D+G  +L  N K L +++
Sbjct: 144 SLRKLDLTGCYMISDAGLGCLAA--GCKKLQVVVLKGCVGISDAGLCFLASNCKELTTID 201

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAG 461
           +    +TD GV+ + +L SL +LNL+   N+ D  L   S  T L+ L++S  R +T+ G
Sbjct: 202 VSYTEITDDGVRCLSNLPSLRVLNLAACSNVGDAGLTRTS--TSLLELDLSCCRSVTNVG 259

Query: 462 LRHLNH 467
           +  L+ 
Sbjct: 260 ISFLSK 265


>gi|351713942|gb|EHB16861.1| F-box/LRR-repeat protein 14 [Heterocephalus glaber]
          Length = 399

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 97/314 (30%), Positives = 165/314 (52%), Gaps = 31/314 (9%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
           ++  +N++SL+ + C  ++D GL H  ++ + +L +L+      IT   +   A  +  L
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
             L+L  C+ I   G L+   GL +L+SLN++ C  ++D  +  L+G+T         L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205

Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QL 240
            L +  C K+TD      +G  +  LLNL  C  ++ A L  LS +GSL  LNL  C  +
Sbjct: 206 QLTLQDCQKLTDLSQHISRGRWRGRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNI 265

Query: 241 SDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL--- 293
           SD G    + +GSL++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+G+   
Sbjct: 266 SDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRM 324

Query: 294 -VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
              + GL  L   +C+ ++D  +      HLS LT ++      T I+   L ++  L  
Sbjct: 325 VRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLPC 381

Query: 350 LKSLNLDARQITDT 363
           LK LNL   Q+TD+
Sbjct: 382 LKVLNLGLWQMTDS 395



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 101/316 (31%), Positives = 165/316 (52%), Gaps = 47/316 (14%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 290 DEGLVNLTGLCN--------LKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDG 339
           D G+ +L G+          L+ L L D Q  +   +H+S G      +NLSF G ISD 
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSQHISRGRWRGRLLNLSFCGGISDA 243

Query: 340 SLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RN 394
            L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ + 
Sbjct: 244 GLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQG 302

Query: 395 FKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNV 452
              L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  +++
Sbjct: 303 LDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDL 362

Query: 453 SN-SRITSAGLRHLNH 467
              +RIT  GL  +  
Sbjct: 363 YGCTRITKRGLERITQ 378



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 167/338 (49%), Gaps = 39/338 (11%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
           RG+  +  LS RR+ +   QGM       N+  L+L  C  +     G   ++ +  L +
Sbjct: 68  RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           LN+  C  ITDS +  ++    LK L++     CS +T++G+  +  GLQ+L  LNL  C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179

Query: 215 P----VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL--------KVLNLGF- 261
                V    L  ++   +   L L +  L D  C+K + +           ++LNL F 
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQD--CQKLTDLSQHISRGRWRGRLLNLSFC 237

Query: 262 NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLR 318
             I+D  L+HL  + +L SLNL SC  I D G+++L  G   L  L++S   +VG   L 
Sbjct: 238 GGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLA 297

Query: 319 HLS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGL 374
           +++ GL  L+S++L    ISD  + R +  +  L++LN+    +ITD GL  +   L+ L
Sbjct: 298 YIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQL 357

Query: 375 THLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
           T +DL+G  RIT  G   +     L+ L +    +TD+
Sbjct: 358 TGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 395



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 51/202 (25%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           ++D+GL+HL    +L+SL+   C  ISD G+ HL                          
Sbjct: 240 ISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL------------------------AM 275

Query: 129 GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
           G + L  LD+  C ++    +    +GL  L+SL++  C+   D   + +  +  L++L 
Sbjct: 276 GSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLN 335

Query: 187 I-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
           I  C ++TD G+  + + L +LT ++L GC                        +++  G
Sbjct: 336 IGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITKRG 372

Query: 245 CEKFSKIGSLKVLNLGFNEITD 266
            E+ +++  LKVLNLG  ++TD
Sbjct: 373 LERITQLPCLKVLNLGLWQMTD 394


>gi|313485040|gb|ADR52996.1| InlA [Listeria monocytogenes]
          Length = 491

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|219821354|gb|ACL37814.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 40  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 94  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             + GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 253 SPIAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 368

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 34  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 86

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 87  TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 141

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 142 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 199

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 254

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 255 IAGLTALTN 263


>gi|290980344|ref|XP_002672892.1| predicted protein [Naegleria gruberi]
 gi|284086472|gb|EFC40148.1| predicted protein [Naegleria gruberi]
          Length = 283

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 79/151 (52%)

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           +  L SLN++   IG EG   ++G+  L  L +S   +G  G + +S +  L SIN+S+ 
Sbjct: 131 MKELTSLNINGNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISINISYN 190

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            I     + ++ +  L SLN+    I DTG   ++ +  LT LD++  RI   GA Y+  
Sbjct: 191 RICGEGAKFISEMKQLTSLNIANNSIGDTGAKFISGMKELTSLDIYNNRIGREGAKYISE 250

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
            K L SL+I G  + D  VK I ++  LT L
Sbjct: 251 MKQLTSLDIGGNQIGDEEVKLISEMKQLTSL 281



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 83/155 (53%), Gaps = 1/155 (0%)

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           ++ +  L  L ++   +G+ G + +SG+  L S+N+S+  I D   + ++ +  L S+N+
Sbjct: 128 ISEMKELTSLNINGNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISINI 187

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
              +I   G   ++ +  LT L++    I D+GA ++   K L SL+I    +   G K+
Sbjct: 188 SYNRICGEGAKFISEMKQLTSLNIANNSIGDTGAKFISGMKELTSLDIYNNRIGREGAKY 247

Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
           I ++  LT L++  N  + D+ ++LIS +  L SL
Sbjct: 248 ISEMKQLTSLDIGGN-QIGDEEVKLISEMKQLTSL 281



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 81/155 (52%)

Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
           ++  +++LT LN+ G  + A     +S +  L  LN++   + D G +  S++  L  +N
Sbjct: 127 FISEMKELTSLNINGNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISIN 186

Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
           + +N I  E    +  +  L SLN+ +  IGD G   ++G+  L  L++ + ++G  G +
Sbjct: 187 ISYNRICGEGAKFISEMKQLTSLNIANNSIGDTGAKFISGMKELTSLDIYNNRIGREGAK 246

Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
           ++S +  L S+++    I D  ++ ++ +  L SL
Sbjct: 247 YISEMKQLTSLDIGGNQIGDEEVKLISEMKQLTSL 281



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 1/126 (0%)

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           ++ +  L SLN++   I   G   ++ +  LT L++    I D GA  +   K L S+ I
Sbjct: 128 ISEMKELTSLNINGNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISINI 187

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
               +   G K I ++  LT LN++ N  + D   + ISG+  L SL++ N+RI   G +
Sbjct: 188 SYNRICGEGAKFISEMKQLTSLNIANNS-IGDTGAKFISGMKELTSLDIYNNRIGREGAK 246

Query: 464 HLNHAR 469
           +++  +
Sbjct: 247 YISEMK 252



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 73/152 (48%), Gaps = 1/152 (0%)

Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
           + +S +  L S+N++   I     + ++G+  L SLN+    I D G   ++ +  L  +
Sbjct: 126 KFISEMKELTSLNINGNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISI 185

Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
           ++   RI   GA ++   K L SL I    + D G K I  +  LT L++  N  +  + 
Sbjct: 186 NISYNRICGEGAKFISEMKQLTSLNIANNSIGDTGAKFISGMKELTSLDIYNN-RIGREG 244

Query: 438 LELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
            + IS +  L SL++  ++I    ++ ++  +
Sbjct: 245 AKYISEMKQLTSLDIGGNQIGDEEVKLISEMK 276



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 90/191 (47%), Gaps = 4/191 (2%)

Query: 191 KVTDSGIAYLKGLQKL-TLLNLEGCPVTAACLDS---LSALGSLFYLNLNRCQLSDDGCE 246
           K T+  +  LK  Q + +++NL+         +    +S +  L  LN+N   +  +G +
Sbjct: 91  KFTEKRVEILKKSQFMNSIVNLKFSTNLFDYFEEAKFISEMKELTSLNINGNVIGAEGAK 150

Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
             S +  L  LN+ +N I D+    +  +  L S+N+    I  EG   ++ +  L  L 
Sbjct: 151 FISGMKQLTSLNISYNVIGDKGAKLISEMKQLISINISYNRICGEGAKFISEMKQLTSLN 210

Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
           +++  +G +G + +SG+  L S+++    I     + ++ +  L SL++   QI D  + 
Sbjct: 211 IANNSIGDTGAKFISGMKELTSLDIYNNRIGREGAKYISEMKQLTSLDIGGNQIGDEEVK 270

Query: 367 ALTSLTGLTHL 377
            ++ +  LT L
Sbjct: 271 LISEMKQLTSL 281



 Score = 46.2 bits (108), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
           A ++   K L SL I G  +   G K I  +  LT LN+S N  + DK  +LIS +  L+
Sbjct: 125 AKFISEMKELTSLNINGNVIGAEGAKFISGMKQLTSLNISYNV-IGDKGAKLISEMKQLI 183

Query: 449 SLNVSNSRITSAGLRHLNHAR 469
           S+N+S +RI   G + ++  +
Sbjct: 184 SINISYNRICGEGAKFISEMK 204



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 25/176 (14%)

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
           + +L SLNI   N I     K +SG+  L SL IS + + D G                 
Sbjct: 131 MKELTSLNIN-GNVIGAEGAKFISGMKQLTSLNISYNVIGDKG----------------- 172

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
                A L  +S +  L  +N++  ++  +G +  S++  L  LN+  N I D     + 
Sbjct: 173 -----AKL--ISEMKQLISINISYNRICGEGAKFISEMKQLTSLNIANNSIGDTGAKFIS 225

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
           G+  L SL++ +  IG EG   ++ +  L  L++   Q+G   ++ +S +  L S+
Sbjct: 226 GMKELTSLDIYNNRIGREGAKYISEMKQLTSLDIGGNQIGDEEVKLISEMKQLTSL 281


>gi|343423900|emb|CCD18013.1| leucine-rich repeat protein [Trypanosoma vivax Y486]
          Length = 648

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 130/407 (31%), Positives = 204/407 (50%), Gaps = 61/407 (14%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT-AQGMKAFAGLINLVK 135
           L + S+L++LD + C  I+D  +  L   S+L +L       IT    +  F+   +L  
Sbjct: 131 LSELSSLRTLDLSHCTGITD--VSPLLKFSSLHTLDLSHCTGITDVSPLLMFS---SLRM 185

Query: 136 LDLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVT 193
           LD+  CT    G+ N+  L KL SL  + +  C   +++ PLS L++L++L IS C+ +T
Sbjct: 186 LDISHCT----GITNVSPLSKLSSLRTLYFLYCTGITNVSPLSELSSLRTLDISHCTGIT 241

Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD--------GC 245
           D  ++ L  L  L +L+L  C    + +  LS + +L  L+L+ C    D        G 
Sbjct: 242 D--VSPLSELSSLRMLDLSHC-TDISNVSRLSKIIALQKLDLSHCTGVTDVSPLSKMIGL 298

Query: 246 EKF--------------SKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIG 289
           EK               S++ SL++LNL     ITD  +  L   ++L +L+L  C GI 
Sbjct: 299 EKLYLSHCTGITDVPPLSELSSLRMLNLSHCTGITD--VSPLSEFSSLHTLDLSHCTGIT 356

Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLS 348
           D     L+ L +L+ L+LS    G + +  LS L++L +++LS  TGI+D S   L+ LS
Sbjct: 357 DVS--PLSELSSLRTLDLSHCT-GITDVSPLSELSSLCTLDLSHCTGITDVS--PLSKLS 411

Query: 349 SLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG- 405
           SL +L L     ITD  ++ L+ L+ L  LDL     ITD   + L     LR L +   
Sbjct: 412 SLCTLELSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSGLRMLYLSHC 467

Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
             +TD  V  + +LSSL +LNLS    +TD     +S L+   SL++
Sbjct: 468 PSITD--VSPLSELSSLRMLNLSHCTGITD-----VSPLSEFSSLHI 507



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 131/421 (31%), Positives = 197/421 (46%), Gaps = 76/421 (18%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           S+L++L F +C  I++  +  L  LS+L +L       IT   +   + L +L  LDL  
Sbjct: 204 SSLRTLYFLYCTGITN--VSPLSELSSLRTLDISHCTGIT--DVSPLSELSSLRMLDLSH 259

Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAY 199
           CT I   +  L  ++ L+ L++  C  +TD  + PLS +  L+ L +S C+ +TD  +  
Sbjct: 260 CTDI-SNVSRLSKIIALQKLDLSHCTGVTD--VSPLSKMIGLEKLYLSHCTGITD--VPP 314

Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
           L  L  L +LNL  C      +  LS   SL  L+L+ C    D     S++ SL+ L+L
Sbjct: 315 LSELSSLRMLNLSHC-TGITDVSPLSEFSSLHTLDLSHCTGITD-VSPLSELSSLRTLDL 372

Query: 260 GF-NEITDECLVHLKGLTNLESLNLDSC-GIGD-EGLVNLTGLCNLKCLELSDTQVGSSG 316
                ITD  +  L  L++L +L+L  C GI D   L  L+ LC L   ELS    G + 
Sbjct: 373 SHCTGITD--VSPLSELSSLCTLDLSHCTGITDVSPLSKLSSLCTL---ELSHCT-GITD 426

Query: 317 LRHLSGLTNLESINLSF-TGISDGS---------------------LRKLAGLSSLKSLN 354
           +  LS L++L +++LS  TGI+D S                     +  L+ LSSL+ LN
Sbjct: 427 VSPLSELSSLRTLDLSHCTGITDVSPLSELSGLRMLYLSHCPSITDVSPLSELSSLRMLN 486

Query: 355 LD-ARQITD------------------TGLAALTSLTGLTHLDLFGAR----ITD-SGAA 390
           L     ITD                  TG+  ++ L+ L+ L + G      ITD S   
Sbjct: 487 LSHCTGITDVSPLSEFSSLHILGLSHCTGITDVSPLSKLSSLHILGLSHCTGITDVSPLT 546

Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
            +  F+ L  L  C G +TD  V  + +LSSL  L+LS    +TD     +S L+ L SL
Sbjct: 547 TIIGFEKLY-LSNCTG-ITD--VSPLSELSSLRTLDLSHCTGITD-----VSPLSKLSSL 597

Query: 451 N 451
            
Sbjct: 598 R 598



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 85/184 (46%), Gaps = 12/184 (6%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
           L + S+L+ L+ + C  I+D  +  L   S+L  L       IT   +   + L +L  L
Sbjct: 476 LSELSSLRMLNLSHCTGITD--VSPLSEFSSLHILGLSHCTGIT--DVSPLSKLSSLHIL 531

Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDS 195
            L  CT I   +  L  ++  E L +  C  ITD  + PLS L++L++L +S C+ +TD 
Sbjct: 532 GLSHCTGI-TDVSPLTTIIGFEKLYLSNCTGITD--VSPLSELSSLRTLDLSHCTGITD- 587

Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
            ++ L  L  L  L    C      +  LS L SL  L+L  C    D     S++ SL 
Sbjct: 588 -VSPLSKLSSLRTLYFSHC-TGITDVSPLSELSSLRTLDLLHCTGITD-VSPLSELSSLG 644

Query: 256 VLNL 259
            L+ 
Sbjct: 645 TLDF 648


>gi|223698613|gb|ACN18982.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 183/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 15  LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 68

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL+ L+ L+    N +TD  +KPL+ 
Sbjct: 69  IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLISLQQLSF--GNQVTD--LKPLAN 120

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 121 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 173

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 174 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 227

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 228 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 285

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T + L     T++   Y  N 
Sbjct: 286 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQVGLNDQAWTNAPVNYKANV 343

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 344 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 118/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 7   DGVEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 59

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL SL+ L+    Q+TD
Sbjct: 60  TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLISLQQLSF-GNQVTD 114

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 227

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 228 LAGLTALTN 236


>gi|395538856|ref|XP_003771390.1| PREDICTED: F-box/LRR-repeat protein 14, partial [Sarcophilus
           harrisii]
          Length = 341

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 165/329 (50%), Gaps = 36/329 (10%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
           RG+  +  LS RR+ +   QGM       N+  L+L  C  +     G   ++ +    +
Sbjct: 9   RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAVVQEIGSPRA 62

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           LN+  C  ITDS +  ++    LK L++     CS +T++G+  +  GLQ+L  LNL GC
Sbjct: 63  LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRGC 120

Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
              +       A +   +A G   L  L L  CQ L+D   +  S+ +  L++LNL F  
Sbjct: 121 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLAGLRLLNLSFCG 180

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
            I+D  L+HL  + +L SLNL SC  I D G+++L  G   L  L++S   +VG   L +
Sbjct: 181 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 240

Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
           ++ GL  L S++     ISD  + R +  +  L++LN+    +ITD GL  +   L+ LT
Sbjct: 241 IAQGLDGLNSLSRCPCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 300

Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEI 403
            +DL+G  RIT  G   +     L+ L +
Sbjct: 301 GIDLYGCTRITKRGLERITQLPCLKVLNL 329



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 102/317 (32%), Positives = 164/317 (51%), Gaps = 48/317 (15%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           + G+ N++SL +S C  +TD+G+ +                        +  +GS   LN
Sbjct: 27  IQGMANIESLNLSGCYNLTDNGLGH----------------------AVVQEIGSPRALN 64

Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL  C  + 
Sbjct: 65  LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRGCRHLS 124

Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
           D G+ +L G+          L+ L L D Q +    L+H+S GL  L  +NLSF G ISD
Sbjct: 125 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLAGLRLLNLSFCGGISD 184

Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 185 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 243

Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
               L SL  C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 244 GLDGLNSLSRCPCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 303

Query: 452 VSN-SRITSAGLRHLNH 467
           +   +RIT  GL  +  
Sbjct: 304 LYGCTRITKRGLERITQ 320



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 165/315 (52%), Gaps = 32/315 (10%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
           ++  +N++SL+ + C  ++D GL H  ++ + +  +L+      IT   +   A  +  L
Sbjct: 27  IQGMANIESLNLSGCYNLTDNGLGHAVVQEIGSPRALNLSLCKQITDSSLGRIAQYLKGL 86

Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
             L+L  C+ I   G L+   GL +L+SLN++ C  ++D  +  L+G+T         L+
Sbjct: 87  EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRGCRHLSDVGIGHLAGMTRSAAEGCLGLE 146

Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
            L +  C K+TD  + ++ +GL  L LLNL  C  ++ A L  LS +GSL  LNL  C  
Sbjct: 147 QLTLQDCQKLTDLSLKHISRGLAGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 206

Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVN 295
           +SD G    + +GSL++  L++ F +++ D+ L ++ +GL  L SL+   C I D+G+  
Sbjct: 207 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLNSLSRCPCHISDDGINR 265

Query: 296 LT----GLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
           +     GL  L   +C+ ++D  +      HLS LT ++      T I+   L ++  L 
Sbjct: 266 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG--CTRITKRGLERITQLP 322

Query: 349 SLKSLNLDARQITDT 363
            LK LNL   Q+T++
Sbjct: 323 CLKVLNLGLWQMTES 337



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 101/204 (49%), Gaps = 29/204 (14%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           +TD  L H+ +  + L+ L+ +FC  ISD GL HL  + +L SL+ R  + I+  G+   
Sbjct: 156 LTDLSLKHISRGLAGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 215

Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           A G + L  LD+  C ++    +    +GL  L SL+   C+   D   + +  +  L++
Sbjct: 216 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLNSLSRCPCHISDDGINRMVRQMHGLRT 275

Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           L I  C ++TD G+  + + L +LT ++L GC                        +++ 
Sbjct: 276 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 312

Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
            G E+ +++  LKVLNLG  ++T+
Sbjct: 313 RGLERITQLPCLKVLNLGLWQMTE 336


>gi|298360122|gb|ADI77640.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALISPATISDGGSYAEPDIT 459



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLTNL+   LSF G   
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 309 NISPLAGLTALTN 321


>gi|449269519|gb|EMC80282.1| F-box/LRR-repeat protein 14, partial [Columba livia]
          Length = 344

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 91/252 (36%), Positives = 141/252 (55%), Gaps = 24/252 (9%)

Query: 239 QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLV 294
           Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + D G+ 
Sbjct: 62  QITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIG 121

Query: 295 NLTGLCN--------LKCLELSDTQVGSS-GLRHLS-GLTNLESINLSFTG-ISDGSLRK 343
           +L G+          L+ L L D Q  S   L+HL+ GL  L  +NLSF G ISD  L  
Sbjct: 122 HLAGMTRSAAEGCLGLEQLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCGGISDAGLLH 181

Query: 344 LAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNL 398
           L+ +SSL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +    L
Sbjct: 182 LSHMSSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGL 240

Query: 399 RSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-S 455
           RSL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  +++   +
Sbjct: 241 RSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT 300

Query: 456 RITSAGLRHLNH 467
           RIT  GL  +  
Sbjct: 301 RITKRGLERITQ 312



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 166/329 (50%), Gaps = 36/329 (10%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
           RG+  +  LS RR+ +   QGM       ++  L+L  C  +     G   +  +  L S
Sbjct: 1   RGIRRVQILSLRRSLSYVIQGMA------DIESLNLSGCYNLTDNGLGHAFVAEISSLRS 54

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           LN+  C  ITDS +  ++    LK L++     CS +T++G+  +  GLQ+L  LNL  C
Sbjct: 55  LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 112

Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
              +       A +   +A G   L  L L  CQ LSD   +  ++ +G L+ LNL F  
Sbjct: 113 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCG 172

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
            I+D  L+HL  +++L SLNL SC  I D G+++L  G   L  L++S   +VG   L +
Sbjct: 173 GISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 232

Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
           ++ GL  L S++L    ISD  + R +  +  L++LN+    +ITD GL  +   L+ LT
Sbjct: 233 IAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 292

Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEI 403
            +DL+G  RIT  G   +     L+ L +
Sbjct: 293 GIDLYGCTRITKRGLERITQLPCLKVLNL 321



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 97/315 (30%), Positives = 167/315 (53%), Gaps = 32/315 (10%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
           ++  ++++SL+ + C  ++D GL H  +  +S+L SL+      IT   +   A  +  L
Sbjct: 19  IQGMADIESLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLCKQITDSSLGRIAQYLKGL 78

Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
             L+L  C+ I   G L+   GL +L+SLN++ C  ++D  +  L+G+T         L+
Sbjct: 79  EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 138

Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
            L +  C K++D  + +L +GL +L  LNL  C  ++ A L  LS + SL  LNL  C  
Sbjct: 139 QLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCGGISDAGLLHLSHMSSLRSLNLRSCDN 198

Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVN 295
           +SD G    + +GSL++  L++ F +++ D+ L ++ +GL  L SL+L SC I DEG+  
Sbjct: 199 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINR 257

Query: 296 LT----GLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
           +     GL  L   +C+ ++D  +      HLS LT ++      T I+   L ++  L 
Sbjct: 258 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG--CTRITKRGLERITQLP 314

Query: 349 SLKSLNLDARQITDT 363
            LK LNL   ++T++
Sbjct: 315 CLKVLNLGLWEMTES 329



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 49/201 (24%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAF 127
           ++D+GL+HL   S+L+SL+   C  ISD G+ HL  G   L+ L     + +  Q +   
Sbjct: 174 ISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYI 233

Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
           A                       +GL  L SL++  C+   +   + +  +  L++L I
Sbjct: 234 A-----------------------QGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNI 270

Query: 188 -SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
             C ++TD G+  + + L +LT ++L GC                        +++  G 
Sbjct: 271 GQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITKRGL 307

Query: 246 EKFSKIGSLKVLNLGFNEITD 266
           E+ +++  LKVLNLG  E+T+
Sbjct: 308 ERITQLPCLKVLNLGLWEMTE 328



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 106/208 (50%), Gaps = 32/208 (15%)

Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
           ++G+ ++ESLNL  C      G+G   +  ++ L +L    C +++D+ +G    ++L G
Sbjct: 19  IQGMADIESLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLCKQITDSSLGRIA-QYLKG 77

Query: 323 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 372
           L  LE     N++ TG+    L    GL  LKSLNL + R ++D G+  L  +T      
Sbjct: 78  LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 133

Query: 373 --GLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLN 426
             GL  L L    +++D    +L R    LR L +  CGG ++DAG+ H+  +SSL  LN
Sbjct: 134 CLGLEQLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCGG-ISDAGLLHLSHMSSLRSLN 192

Query: 427 LSQNCNLTDK-TLELISGLTGLVSLNVS 453
           L    N++D   + L  G   L  L+VS
Sbjct: 193 LRSCDNISDTGIMHLAMGSLRLSGLDVS 220


>gi|219821255|gb|ACL37748.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 40  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 94  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKV 368

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 32  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLTNL+   LSF G   
Sbjct: 88  GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 139

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 140 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 195

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 196 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 251 NISPLAGLTALTN 263


>gi|441470006|emb|CCQ19761.1| Internalin-A [Listeria monocytogenes]
          Length = 489

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 118/247 (47%), Gaps = 43/247 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHL 465
            AGL  L
Sbjct: 313 LAGLTAL 319


>gi|421888173|ref|ZP_16319281.1| leucine-rich-repeat type III effector protein (GALA4) [Ralstonia
           solanacearum K60-1]
 gi|378966462|emb|CCF96029.1| leucine-rich-repeat type III effector protein (GALA4) [Ralstonia
           solanacearum K60-1]
          Length = 466

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 144/322 (44%), Gaps = 32/322 (9%)

Query: 167 CITDSDMKPLSGLTNLKSLQIS--CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
             +D+D++ L    +L+ L +S     +T +GIA L  L  L  L++ GC + A     L
Sbjct: 137 PFSDADLQRLP--PSLRELDLSQCTGPITAAGIARLLAL-PLDRLDVGGCRLNADSARLL 193

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
           +   +L  L++ R  + D G   F++   L  LN   N I    +  L   T + +L++ 
Sbjct: 194 AGHPTLTALDIRRNAIGDAGVAAFARNKKLTALNASSNGIGPAGVRALAANTTIATLDIS 253

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
              IGDEG   L G   L  L+ SD+ +G  G R L+    L S++LS+  I       L
Sbjct: 254 DNEIGDEGARALAGHTALTKLDASDSGIGPEGTRALATSMTLASLDLSYNEIGAEGAEAL 313

Query: 345 AGLSSLKSL------------------------NLDARQITDTGLAALTSLTGLTHLDLF 380
              ++L +L                        +L +  I   G  A  + T LT L+L 
Sbjct: 314 GENTTLTTLHVCGNALGHREAALLAASATLTTLDLSSNAIGSAGARAFGTNTTLTKLNLS 373

Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
              I +  +A+  N K L  L+I    + DA  + + D  +LT LN S N  + D     
Sbjct: 374 NNGI-ERVSAWANNSK-LTKLDISNNRIGDAAAQVLADSRTLTTLNASSN-RIGDAGASA 430

Query: 441 ISGLTGLVSLNVSNSRITSAGL 462
           ++G T L +LNVS +RI  AGL
Sbjct: 431 LAGNTTLATLNVSFNRIGEAGL 452



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 130/276 (47%), Gaps = 16/276 (5%)

Query: 203 LQKLTL----LNLEGC--PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
           LQ+L      L+L  C  P+TAA +  L AL  L  L++  C+L+ D     +   +L  
Sbjct: 143 LQRLPPSLRELDLSQCTGPITAAGIARLLAL-PLDRLDVGGCRLNADSARLLAGHPTLTA 201

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
           L++  N I D  +        L +LN  S GIG  G+  L     +  L++SD ++G  G
Sbjct: 202 LDIRRNAIGDAGVAAFARNKKLTALNASSNGIGPAGVRALAANTTIATLDISDNEIGDEG 261

Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
            R L+G T L  ++ S +GI     R LA   +L SL+L   +I   G  AL   T LT 
Sbjct: 262 ARALAGHTALTKLDASDSGIGPEGTRALATSMTLASLDLSYNEIGAEGAEALGENTTLTT 321

Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
           L + G  +    AA L     L +L++    +  AG +     ++LT LNLS N      
Sbjct: 322 LHVCGNALGHREAALLAASATLTTLDLSSNAIGSAGARAFGTNTTLTKLNLSNNG----- 376

Query: 437 TLELISGL---TGLVSLNVSNSRITSAGLRHLNHAR 469
            +E +S     + L  L++SN+RI  A  + L  +R
Sbjct: 377 -IERVSAWANNSKLTKLDISNNRIGDAAAQVLADSR 411



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 134/310 (43%), Gaps = 36/310 (11%)

Query: 133 LVKLDLERCTRIHGGLVNLKGLMKL-----ESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
           L +LDL +CT    G +   G+ +L     + L++  C    DS  + L+G   L +L I
Sbjct: 150 LRELDLSQCT----GPITAAGIARLLALPLDRLDVGGCRLNADS-ARLLAGHPTLTALDI 204

Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
             + + D+G+A     +KLT LN     +  A + +L+A  ++  L+++  ++ D+G   
Sbjct: 205 RRNAIGDAGVAAFARNKKLTALNASSNGIGPAGVRALAANTTIATLDISDNEIGDEGARA 264

Query: 248 F-------------SKIG-----------SLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
                         S IG           +L  L+L +NEI  E    L   T L +L++
Sbjct: 265 LAGHTALTKLDASDSGIGPEGTRALATSMTLASLDLSYNEIGAEGAEALGENTTLTTLHV 324

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
               +G      L     L  L+LS   +GS+G R     T L  +NLS  GI    +  
Sbjct: 325 CGNALGHREAALLAASATLTTLDLSSNAIGSAGARAFGTNTTLTKLNLSNNGIE--RVSA 382

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
            A  S L  L++   +I D     L     LT L+    RI D+GA+ L     L +L +
Sbjct: 383 WANNSKLTKLDISNNRIGDAAAQVLADSRTLTTLNASSNRIGDAGASALAGNTTLATLNV 442

Query: 404 CGGGLTDAGV 413
               + +AG+
Sbjct: 443 SFNRIGEAGL 452



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 119/282 (42%), Gaps = 23/282 (8%)

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           + A   +  AG   L  LD+ R      G+       KL +LN    N I  + ++ L+ 
Sbjct: 185 LNADSARLLAGHPTLTALDIRRNAIGDAGVAAFARNKKLTALNAS-SNGIGPAGVRALAA 243

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
            T + +L IS +++ D G   L G   LT L+     +      +L+   +L  L+L+  
Sbjct: 244 NTTIATLDISDNEIGDEGARALAGHTALTKLDASDSGIGPEGTRALATSMTLASLDLSYN 303

Query: 239 QLSDDGCEKFSKIGSLKVLN-----LGFNEITDECLVHLKGLTNLESLNLDSCG------ 287
           ++  +G E   +  +L  L+     LG  E             +L S  + S G      
Sbjct: 304 EIGAEGAEALGENTTLTTLHVCGNALGHREAALLAASATLTTLDLSSNAIGSAGARAFGT 363

Query: 288 --------IGDEGLVNLTGLCN---LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
                   + + G+  ++   N   L  L++S+ ++G +  + L+    L ++N S   I
Sbjct: 364 NTTLTKLNLSNNGIERVSAWANNSKLTKLDISNNRIGDAAAQVLADSRTLTTLNASSNRI 423

Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
            D     LAG ++L +LN+   +I + GL AL + T L  L+
Sbjct: 424 GDAGASALAGNTTLATLNVSFNRIGEAGLLALEANTTLKKLE 465


>gi|371942144|gb|AEX60884.1| truncated internaline [Listeria monocytogenes]
          Length = 491

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|198432493|ref|XP_002130800.1| PREDICTED: similar to F-box and leucine-rich repeat protein 13
           [Ciona intestinalis]
          Length = 798

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 117/420 (27%), Positives = 196/420 (46%), Gaps = 49/420 (11%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCS-NLQSLDFNFC 91
           +QDL   +  GVND+ M  IA    +LL +++S +++TD  L  L  C  N+Q L   +C
Sbjct: 321 VQDLNFSECKGVNDEVMRTIAESCPTLLYLNISHTEITDGTLRTLSRCCLNMQYLSLAYC 380

Query: 92  IQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFA----GLINLVKLDL------ 138
            + +D GL ++   +G   LT + F     ITAQG +  A     L ++V  D+      
Sbjct: 381 SKYTDRGLHYMASGKGCRKLTYIDFSGCLQITAQGFRHVAHGCTSLQSIVLNDMPSLTDS 440

Query: 139 ------ERCTRIHG----GLVNLKGLM--------KLESLNIKWCNCITDSDMKPLSGLT 180
                 E+CT +      G  NL  +         KL+ L I+    ITD+  K L  + 
Sbjct: 441 CIISLVEKCTNLRSVSLIGSPNLTDMAFKALAQAKKLQKLRIESNQNITDNTFKTLGKMC 500

Query: 181 NL--KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGS---LFYLN 234
                   + C ++TD  +  L  L+ + +LNL  C  ++ + +  +    S   +  +N
Sbjct: 501 PYIGHFYVVDCQRLTDMMLKALSPLRSIIVLNLADCVRISDSGVRQMVEGPSGSKIREMN 560

Query: 235 LNRC-QLSDDGCEKFS-KIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSCGIGDE 291
           L  C ++SD    + + +  SL  L L F E +TD  +  L  +  L  ++L    I D+
Sbjct: 561 LTNCVRVSDVSLLRVAQRCHSLTHLCLCFCEHVTDAGIELLGSMPALLHVDLSGTNIKDQ 620

Query: 292 GLVNLTGLCNLKCLELSDTQ-VGSSGLRHL-SGLTNLESINLSF-TGISDGSLRKLAGLS 348
           GL +L     ++ + +S+ Q +   GL+     +T L+++++S    +SD +++ LA   
Sbjct: 621 GLASLGVNSRIRSVVMSECQGITDLGLQKFCQKVTELDTLDVSHCMSLSDAAIKNLAFCC 680

Query: 349 S-LKSLNLDA-RQITDTGLAALTSLTGLTH-LDLFGA-RITDSGAAYLRN-FKNLRSLEI 403
             L SLN+     +TD  +  L+ +    H L+L G   I+D    YLR   K LRSL I
Sbjct: 681 RMLTSLNVAGCPLLTDLSIQYLSGVCHYIHFLNLSGCIHISDRAVKYLRKGCKQLRSLTI 740



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 110/466 (23%), Positives = 186/466 (39%), Gaps = 108/466 (23%)

Query: 29  RDCALQ-----DLC-LGQYPGVNDKWMDVI-ASQGSSLLSVDLSGSDVTDSGLIH-LKDC 80
           R CA+Q     DL  LG+   V   W  +  A    S L+     S+VTD  +I  L+ C
Sbjct: 233 RKCAIQIFSFLDLMDLGRCARVCRAWKVITGAPTLWSHLNFSKVRSNVTDKMVIQCLQKC 292

Query: 81  -SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
              L  L+   C  +     + +    N+  L+F     +  + M+  A          E
Sbjct: 293 RPYLVHLNLQQCYSVHWPTFKSISECRNVQDLNFSECKGVNDEVMRTIA----------E 342

Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQIS-CSKVTDSGI 197
            C               L  LNI     ITD  ++ LS    N++ L ++ CSK TD G+
Sbjct: 343 SCP-------------TLLYLNISHTE-ITDGTLRTLSRCCLNMQYLSLAYCSKYTDRGL 388

Query: 198 AYL---KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
            Y+   KG +KLT ++  GC  +TA     ++                  GC     I  
Sbjct: 389 HYMASGKGCRKLTYIDFSGCLQITAQGFRHVA-----------------HGCTSLQSI-- 429

Query: 254 LKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
             VLN     +TD C++ L +  TNL S++L    IG   L ++                
Sbjct: 430 --VLN-DMPSLTDSCIISLVEKCTNLRSVSL----IGSPNLTDM---------------- 466

Query: 313 GSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSL--KSLNLDARQITDTGLAALT 369
                + L+    L+ + + S   I+D + + L  +         +D +++TD  L AL+
Sbjct: 467 ---AFKALAQAKKLQKLRIESNQNITDNTFKTLGKMCPYIGHFYVVDCQRLTDMMLKALS 523

Query: 370 SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
            L  +  L+L    RI+DSG   +    +       G  + +  + +   +S ++LL ++
Sbjct: 524 PLRSIIVLNLADCVRISDSGVRQMVEGPS-------GSKIREMNLTNCVRVSDVSLLRVA 576

Query: 429 QNCN------------LTDKTLELISGLTGLVSLNVSNSRITSAGL 462
           Q C+            +TD  +EL+  +  L+ +++S + I   GL
Sbjct: 577 QRCHSLTHLCLCFCEHVTDAGIELLGSMPALLHVDLSGTNIKDQGL 622



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 110/427 (25%), Positives = 176/427 (41%), Gaps = 102/427 (23%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
           + +C N+Q L+F+ C  ++D                         + M+  A        
Sbjct: 315 ISECRNVQDLNFSECKGVND-------------------------EVMRTIA-------- 341

Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQIS-CSKVTD 194
             E C               L  LNI     ITD  ++ LS    N++ L ++ CSK TD
Sbjct: 342 --ESCP-------------TLLYLNISHTE-ITDGTLRTLSRCCLNMQYLSLAYCSKYTD 385

Query: 195 SGIAYL---KGLQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGC---- 245
            G+ Y+   KG +KLT ++  GC  +TA     ++    SL  + LN      D C    
Sbjct: 386 RGLHYMASGKGCRKLTYIDFSGCLQITAQGFRHVAHGCTSLQSIVLNDMPSLTDSCIISL 445

Query: 246 -EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS-CGIGDEGLVNLTGLCN-- 301
            EK + + S+ +  +G   +TD     L     L+ L ++S   I D     L  +C   
Sbjct: 446 VEKCTNLRSVSL--IGSPNLTDMAFKALAQAKKLQKLRIESNQNITDNTFKTLGKMCPYI 503

Query: 302 -----LKCLELSD--------------------TQVGSSGLRHL----SGLTNLESINLS 332
                + C  L+D                     ++  SG+R +    SG + +  +NL+
Sbjct: 504 GHFYVVDCQRLTDMMLKALSPLRSIIVLNLADCVRISDSGVRQMVEGPSG-SKIREMNLT 562

Query: 333 -FTGISDGSLRKLAG-LSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
               +SD SL ++A    SL  L L     +TD G+  L S+  L H+DL G  I D G 
Sbjct: 563 NCVRVSDVSLLRVAQRCHSLTHLCLCFCEHVTDAGIELLGSMPALLHVDLSGTNIKDQGL 622

Query: 390 AYLRNFKNLRSLEICG-GGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTG 446
           A L     +RS+ +    G+TD G+ K  + ++ L  L++S   +L+D  ++ L      
Sbjct: 623 ASLGVNSRIRSVVMSECQGITDLGLQKFCQKVTELDTLDVSHCMSLSDAAIKNLAFCCRM 682

Query: 447 LVSLNVS 453
           L SLNV+
Sbjct: 683 LTSLNVA 689


>gi|405757422|ref|YP_006686698.1| internalin A protein InlA, N-terminal part, partial [Listeria
           monocytogenes SLCC2479]
 gi|145687805|gb|ABP88875.1| truncated internalin A precursor [Listeria monocytogenes]
 gi|145687811|gb|ABP88878.1| truncated internalin A precursor [Listeria monocytogenes]
 gi|145687813|gb|ABP88879.1| truncated internalin A precursor [Listeria monocytogenes]
 gi|167861890|gb|ACA05644.1| InlA [Listeria monocytogenes]
 gi|167861942|gb|ACA05670.1| InlA [Listeria monocytogenes]
 gi|167861986|gb|ACA05692.1| InlA [Listeria monocytogenes]
 gi|194326143|emb|CAQ77230.1| internalin A [Listeria monocytogenes]
 gi|298359794|gb|ADI77476.1| truncated internalin A [Listeria monocytogenes]
 gi|298359982|gb|ADI77570.1| truncated internalin A [Listeria monocytogenes]
 gi|298360074|gb|ADI77616.1| truncated internalin A [Listeria monocytogenes]
 gi|298360136|gb|ADI77647.1| truncated internalin A [Listeria monocytogenes]
 gi|298360184|gb|ADI77671.1| truncated internalin A [Listeria monocytogenes]
 gi|298360286|gb|ADI77722.1| truncated internalin A [Listeria monocytogenes]
 gi|298360300|gb|ADI77729.1| truncated internalin A [Listeria monocytogenes]
 gi|298360306|gb|ADI77732.1| truncated internalin A [Listeria monocytogenes]
 gi|298360344|gb|ADI77751.1| truncated internalin A [Listeria monocytogenes]
 gi|298360352|gb|ADI77755.1| truncated internalin A [Listeria monocytogenes]
 gi|298360358|gb|ADI77758.1| truncated internalin A [Listeria monocytogenes]
 gi|298360602|gb|ADI77880.1| truncated internalin A [Listeria monocytogenes]
 gi|298360636|gb|ADI77897.1| truncated internalin A [Listeria monocytogenes]
 gi|371942098|gb|AEX60861.1| truncated internaline [Listeria monocytogenes]
 gi|371942122|gb|AEX60873.1| truncated internaline [Listeria monocytogenes]
 gi|404235304|emb|CBY56706.1| similar to internalin A protein InlA, N-terminal part [Listeria
           monocytogenes SLCC2479]
          Length = 576

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 120/251 (47%), Gaps = 43/251 (17%)

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           S DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L 
Sbjct: 90  SIDGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLT 142

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
           NL  L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+
Sbjct: 143 NLTGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQV 197

Query: 361 TDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRS 400
           TD  L  L +LT L  LD+   +++D S  A L N +                   NL  
Sbjct: 198 TD--LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE 255

Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS- 459
           L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++ 
Sbjct: 256 LSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNI 310

Query: 460 ---AGLRHLNH 467
              AGL  L +
Sbjct: 311 SPLAGLTALTN 321


>gi|83747318|ref|ZP_00944359.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
 gi|207739111|ref|YP_002257504.1| type III effector protein gala2 [Ralstonia solanacearum IPO1609]
 gi|83726018|gb|EAP73155.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
 gi|206592484|emb|CAQ59390.1| type III effector protein gala2 [Ralstonia solanacearum IPO1609]
          Length = 978

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 172/377 (45%), Gaps = 7/377 (1%)

Query: 57  SSLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
            S+  +DLSG   S V+++GL  L     L+SLD +   +I D  ++ L   ++LTSL+ 
Sbjct: 574 PSVRHLDLSGCTGSAVSEAGLAVLARLP-LESLDLS-GTRIGDREVQALASSTSLTSLNL 631

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
              N I   G +A      L  L++        G+  L     L SL ++    I ++ +
Sbjct: 632 S-GNRIGNAGAQALGRNTVLTALNVSANPIGDAGVQALADSRSLTSLELRGIG-IGEAGI 689

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
             L+  T L+SL IS + +++   A L   Q L  L    C +T +    L+ + SL  L
Sbjct: 690 AALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKANACGLTNSMAQQLARIRSLRTL 749

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
            +    + D G    ++  SL+ LNL  N IT + L  L+    L SL++   G GD G 
Sbjct: 750 EVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRPLELSRTLTSLDVSGIGCGDRGA 809

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
           + L+    L  L+L    +GS+G + L+    L S++L    I   + + LA    L SL
Sbjct: 810 LLLSKNRALTSLKLGFNGIGSAGAQGLAANRTLISLDLRGNTIDVDAAKALANTGCLTSL 869

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
           N+   ++ D   +AL     LT LD+   R++   A  L     L SL I    +   G 
Sbjct: 870 NVSDCKLDDEAASALAESLTLTSLDVSVNRLSGQAARALAGNATLTSLNISHNHIGPDGA 929

Query: 414 KHIKDLSSLTLLNLSQN 430
           + + +  SLT L+   N
Sbjct: 930 QALAESPSLTSLDARAN 946



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 156/351 (44%), Gaps = 4/351 (1%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
           + D+ +  +AS  +SL S++LSG+ + ++G   L   + L +L+ +    I D G++ L 
Sbjct: 612 IGDREVQALASS-TSLTSLNLSGNRIGNAGAQALGRNTVLTALNVS-ANPIGDAGVQALA 669

Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
              +LTSL  R    I   G+ A A    L  LD+            L     L SL   
Sbjct: 670 DSRSLTSLELR-GIGIGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKAN 728

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
            C  +T+S  + L+ + +L++L++  + + D+G+  +     L  LNL   P+T   L  
Sbjct: 729 ACG-LTNSMAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRP 787

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           L    +L  L+++     D G    SK  +L  L LGFN I       L     L SL+L
Sbjct: 788 LELSRTLTSLDVSGIGCGDRGALLLSKNRALTSLKLGFNGIGSAGAQGLAANRTLISLDL 847

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
               I  +    L     L  L +SD ++       L+    L S+++S   +S  + R 
Sbjct: 848 RGNTIDVDAAKALANTGCLTSLNVSDCKLDDEAASALAESLTLTSLDVSVNRLSGQAARA 907

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
           LAG ++L SLN+    I   G  AL     LT LD     I ++GA  L N
Sbjct: 908 LAGNATLTSLNISHNHIGPDGAQALAESPSLTSLDARANGIGEAGARALEN 958



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 101/192 (52%), Gaps = 1/192 (0%)

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           LESL+L    IGD  +  L    +L  L LS  ++G++G + L   T L ++N+S   I 
Sbjct: 602 LESLDLSGTRIGDREVQALASSTSLTSLNLSGNRIGNAGAQALGRNTVLTALNVSANPIG 661

Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
           D  ++ LA   SL SL L    I + G+AAL S T L  LD+    +++  AA L   + 
Sbjct: 662 DAGVQALADSRSLTSLELRGIGIGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQT 721

Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
           L SL+    GLT++  + +  + SL  L +  N ++ D  +  I+    L +LN+S++ I
Sbjct: 722 LASLKANACGLTNSMAQQLARIRSLRTLEVGSN-SIGDTGVLAIARNASLRTLNLSHNPI 780

Query: 458 TSAGLRHLNHAR 469
           T  GLR L  +R
Sbjct: 781 TLQGLRPLELSR 792



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 130/291 (44%), Gaps = 16/291 (5%)

Query: 43  GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
           G+ +  +  +AS  + L S+D+S +D+++     L     L SL  N C  +++   + L
Sbjct: 683 GIGEAGIAALASN-TVLRSLDISSNDLSEQSAAELARNQTLASLKANAC-GLTNSMAQQL 740

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE---- 158
             + +L +L    +N+I   G+ A A   +L  L+L          + L+GL  LE    
Sbjct: 741 ARIRSLRTLEVG-SNSIGDTGVLAIARNASLRTLNLSHNP------ITLQGLRPLELSRT 793

Query: 159 --SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
             SL++    C  D     LS    L SL++  + +  +G   L   + L  L+L G  +
Sbjct: 794 LTSLDVSGIGC-GDRGALLLSKNRALTSLKLGFNGIGSAGAQGLAANRTLISLDLRGNTI 852

Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
                 +L+  G L  LN++ C+L D+     ++  +L  L++  N ++ +    L G  
Sbjct: 853 DVDAAKALANTGCLTSLNVSDCKLDDEAASALAESLTLTSLDVSVNRLSGQAARALAGNA 912

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
            L SLN+    IG +G   L    +L  L+     +G +G R L   T ++
Sbjct: 913 TLTSLNISHNHIGPDGAQALAESPSLTSLDARANGIGEAGARALENNTRMQ 963



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 111/269 (41%), Gaps = 26/269 (9%)

Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQK-LTLLNLEGCPVTAACLDSLSALG--SLFYLNLN 236
            NL SLQ+  +      +  LK L   L  L+L  C   A   ++++ L    L  LN+ 
Sbjct: 106 PNLTSLQLEGNFT----LQDLKALPATLRHLDLSACTGGAKSFEAIAYLAGLPLESLNVA 161

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG---L 293
              + DDG    +   SL+ LN     I       L     L SL+L   GIGDEG   L
Sbjct: 162 GADIGDDGARLLAANPSLRALNAANGGIGAAGARALAESPVLASLDLTRNGIGDEGARAL 221

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTG--------------ISD 338
            +   L NL  L    T VG+  L     LT L+  NL + TG              I+ 
Sbjct: 222 ADSRSLTNLAVLNCLVTDVGARALAGNGTLTALDLGNLITETGNELEQAGYDRTANEITA 281

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
                LA   SL SL++      D G+ AL     LT L++    +T + A  L     L
Sbjct: 282 RGAWALAQNRSLTSLSIQGNLCGDGGVQALAKNRTLTSLNVAYTDMTPASATELARNPVL 341

Query: 399 RSLEI-CGGGLTDAGVKHIKDLSSLTLLN 426
            SL +    GL DAGV  +    SLTLL+
Sbjct: 342 TSLSVRWNYGLGDAGVVELAKSPSLTLLD 370



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 84/180 (46%), Gaps = 19/180 (10%)

Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
           E + +L GL  LESLN+    IGD+G   L    +L+ L  ++  +G++G R L+    L
Sbjct: 145 EAIAYLAGLP-LESLNVAGADIGDDGARLLAANPSLRALNAANGGIGAAGARALAESPVL 203

Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL------- 379
            S++L+  GI D   R LA   SL +L +    +TD G  AL     LT LDL       
Sbjct: 204 ASLDLTRNGIGDEGARALADSRSLTNLAVLNCLVTDVGARALAGNGTLTALDLGNLITET 263

Query: 380 -----------FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
                          IT  GA  L   ++L SL I G    D GV+ +    +LT LN++
Sbjct: 264 GNELEQAGYDRTANEITARGAWALAQNRSLTSLSIQGNLCGDGGVQALAKNRTLTSLNVA 323


>gi|254828935|ref|ZP_05233622.1| internalin A [Listeria monocytogenes FSL N3-165]
 gi|130774797|gb|ABO32413.1| InlA [Listeria monocytogenes]
 gi|130774811|gb|ABO32418.1| InlA [Listeria monocytogenes]
 gi|194239388|emb|CAQ76834.1| internalin A [Listeria monocytogenes]
 gi|258601346|gb|EEW14671.1| internalin A [Listeria monocytogenes FSL N3-165]
 gi|298360424|gb|ADI77791.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 123/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKVNV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLT+L+   LSF G   
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQV 197

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 309 NISPLAGLTALTN 321


>gi|85679240|gb|ABC72036.1| InlA [Listeria monocytogenes]
          Length = 794

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 123/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 99  LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 152

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 153 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 204

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +K++D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 205 LTTLERLDISSNKLSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 257

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 258 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 311

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 312 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 369

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 370 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKTNV 427

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 428 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 458



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 91  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 143

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 144 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 198

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 199 --LKPLANLTTLERLDISSNKLSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 256

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 257 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 311

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 312 LAGLTALTN 320


>gi|167861934|gb|ACA05666.1| InlA [Listeria monocytogenes]
 gi|194326141|emb|CAQ77229.1| internalin A [Listeria monocytogenes]
          Length = 538

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|145687803|gb|ABP88874.1| truncated internalin A precursor [Listeria monocytogenes]
 gi|145687809|gb|ABP88877.1| truncated internalin A precursor [Listeria monocytogenes]
 gi|194326155|emb|CAQ77236.1| internalin A [Listeria monocytogenes]
 gi|294358379|gb|ADE73842.1| truncated InlA [Listeria monocytogenes]
 gi|294358381|gb|ADE73843.1| truncated InlA [Listeria monocytogenes]
 gi|294358383|gb|ADE73844.1| truncated InlA [Listeria monocytogenes]
 gi|294358385|gb|ADE73845.1| truncated InlA [Listeria monocytogenes]
 gi|298359890|gb|ADI77524.1| truncated internalin A [Listeria monocytogenes]
 gi|298359938|gb|ADI77548.1| truncated internalin A [Listeria monocytogenes]
 gi|298359960|gb|ADI77559.1| truncated internalin A [Listeria monocytogenes]
 gi|298360012|gb|ADI77585.1| truncated internalin A [Listeria monocytogenes]
 gi|371942072|gb|AEX60848.1| truncated internaline [Listeria monocytogenes]
 gi|371942094|gb|AEX60859.1| truncated internaline [Listeria monocytogenes]
 gi|371942120|gb|AEX60872.1| truncated internaline [Listeria monocytogenes]
 gi|371942130|gb|AEX60877.1| truncated internaline [Listeria monocytogenes]
          Length = 491

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|255028812|ref|ZP_05300763.1| internalin A [Listeria monocytogenes LO28]
          Length = 502

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 90  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 143

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KPL
Sbjct: 144 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 195

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 196 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 248

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 249 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 302

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 303 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 360

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 361 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 418

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 419 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 451



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 84  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 136

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 137 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 191

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 192 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 249

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 250 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 304

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 305 LAGLTALTN 313


>gi|223698697|gb|ACN19038.1| truncated internalin A [Listeria monocytogenes]
 gi|223698841|gb|ACN19134.1| truncated internalin A [Listeria monocytogenes]
 gi|223698877|gb|ACN19158.1| truncated internalin A [Listeria monocytogenes]
 gi|223698922|gb|ACN19188.1| truncated internalin A [Listeria monocytogenes]
          Length = 406

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 13  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KPL
Sbjct: 67  NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 118

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 341

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 374



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 118/247 (47%), Gaps = 43/247 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 7   DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 60  TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 227

Query: 460 -AGLRHL 465
            AGL  L
Sbjct: 228 LAGLTAL 234


>gi|428303964|ref|YP_007140789.1| hypothetical protein Cri9333_0293 [Crinalium epipsammum PCC 9333]
 gi|428245499|gb|AFZ11279.1| leucine-rich repeat-containing protein [Crinalium epipsammum PCC
           9333]
          Length = 409

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 96/298 (32%), Positives = 149/298 (50%), Gaps = 33/298 (11%)

Query: 68  DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           ++ DS  + L+    ++ LD N   +I+   LE ++ L NLT L    N       +   
Sbjct: 128 EIPDSKRLTLEVLQGIKVLDANNA-EIT--SLEGIQALRNLTILRLDGNKI---SDVTPL 181

Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
           AGL NL  L L+     H  + ++K L  L +L++ + N    SD+ PL+GL NL+ L++
Sbjct: 182 AGLTNLRNLRLD-----HSQISDVKPLTGLTNLSVLYLNKNQISDVTPLAGLINLRDLRL 236

Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF-YLNLNRCQLSD--DG 244
             ++++D  +  L GL  L  L L+         + +S +  LF ++NL    L+D  D 
Sbjct: 237 DQNQISD--VTPLAGLINLRGLGLDQ--------NQISDVKPLFGFVNLTTLYLNDNSDV 286

Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
              FS + +L VL L  N+I+D  +  L  LTNL  L LD   I D  +  L  L  L  
Sbjct: 287 TPLFS-LANLTVLTLYDNKISD--VKPLTALTNLTVLELDQNQISD--VKPLASLARLTR 341

Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
           L L+D Q+  S +  L+GL  L S+ LS   ISD  ++ L GL++L  L L    I++
Sbjct: 342 LSLNDNQI--SDVEPLAGLAKLTSLRLSQNQISD--VKPLTGLTNLSGLGLSDNPISN 395



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 138/286 (48%), Gaps = 44/286 (15%)

Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
           +  + +L+G+  L +L I   +    SD+ PL+GLTNL++L++  S+++D  +  L GL 
Sbjct: 150 NAEITSLEGIQALRNLTILRLDGNKISDVTPLAGLTNLRNLRLDHSQISD--VKPLTGLT 207

Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
            L                      S+ YLN N  Q+SD      + + +L+ L L  N+I
Sbjct: 208 NL----------------------SVLYLNKN--QISD--VTPLAGLINLRDLRLDQNQI 241

Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
           +D  +  L GL NL  L LD   I D  +  L G  NL  L L+D    +S +  L  L 
Sbjct: 242 SD--VTPLAGLINLRGLGLDQNQISD--VKPLFGFVNLTTLYLND----NSDVTPLFSLA 293

Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
           NL  + L    ISD  ++ L  L++L  L LD  QI+D  +  L SL  LT L L   +I
Sbjct: 294 NLTVLTLYDNKISD--VKPLTALTNLTVLELDQNQISD--VKPLASLARLTRLSLNDNQI 349

Query: 385 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           +D     L     L SL +    ++D  VK +  L++L+ L LS N
Sbjct: 350 SD--VEPLAGLAKLTSLRLSQNQISD--VKPLTGLTNLSGLGLSDN 391



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 157/303 (51%), Gaps = 26/303 (8%)

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
           KLE+  I+    I DS    L  L  +K L  + +++T   +  ++ L+ LT+L L+G  
Sbjct: 118 KLEAA-IRRQVEIPDSKRLTLEVLQGIKVLDANNAEIT--SLEGIQALRNLTILRLDGNK 174

Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
           ++      L+ L +L  L L+  Q+SD   +  + + +L VL L  N+I+D  +  L GL
Sbjct: 175 ISDVT--PLAGLTNLRNLRLDHSQISD--VKPLTGLTNLSVLYLNKNQISD--VTPLAGL 228

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
            NL  L LD   I D  +  L GL NL+ L L   Q+  S ++ L G  NL ++ L+   
Sbjct: 229 INLRDLRLDQNQISD--VTPLAGLINLRGLGLDQNQI--SDVKPLFGFVNLTTLYLN--- 281

Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
             +  +  L  L++L  L L   +I+D  +  LT+LT LT L+L   +I+D     L + 
Sbjct: 282 -DNSDVTPLFSLANLTVLTLYDNKISD--VKPLTALTNLTVLELDQNQISD--VKPLASL 336

Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
             L  L +    ++D  V+ +  L+ LT L LSQN  ++D  ++ ++GLT L  L +S++
Sbjct: 337 ARLTRLSLNDNQISD--VEPLAGLAKLTSLRLSQN-QISD--VKPLTGLTNLSGLGLSDN 391

Query: 456 RIT 458
            I+
Sbjct: 392 PIS 394


>gi|72385461|ref|XP_846398.1| leucine-rich repeat protein (LRRP) [Trypanosoma brucei TREU927]
 gi|25956236|emb|CAB95328.2| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
          Length = 1448

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 106/378 (28%), Positives = 167/378 (44%), Gaps = 56/378 (14%)

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
           ++A A ++ L KL L  CT I  G+  L  L +L+ L++   N   +S ++ L     + 
Sbjct: 531 VEALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNES-LRSLCLSQTVV 589

Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           SL +S C K+T+  ++++  L+ L  LNL  C    A  ++L  L  L    L+   ++D
Sbjct: 590 SLNLSHCWKMTN--VSHISSLEALNELNLSNCFGINAGWEALEKLQQLHVAILSNTHITD 647

Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV---NLTG 298
                FS   +L  L+L F N++ D  +  L  +T LE LNLDSC    +GL     L  
Sbjct: 648 RDISHFSNCKNLITLDLSFCNKLLD--VTALSNITTLEELNLDSCSNIRKGLSVLGELPR 705

Query: 299 LC--NLKCLELSDTQV-----GSSGLR-------------HLSGLTNLESINLSFTGISD 338
           LC  N+K ++L D+ +     G+S +R              LS L  LE +NL +     
Sbjct: 706 LCVLNIKGVQLEDSVIVSLGNGNSFVRLSLENCKGFGDVAPLSNLVTLEELNLHYCDKVT 765

Query: 339 GSLRKLAGLSSLKSLNLDARQITD------------------------TGLAALTSLTGL 374
             +  L  L  L+ L+L   Q+ D                        T ++A+ SLT L
Sbjct: 766 SGMGTLGRLPQLRVLDLGRTQVDDNSLENICTCSSPLVSLNLSNCKKITSISAIASLTAL 825

Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
             L++       SG         LR   +      D  V+H+ +  SL  LNL+   ++T
Sbjct: 826 EELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRTNDENVRHVSECKSLNTLNLAFCKDIT 885

Query: 435 DKTLELISGLTGLVSLNV 452
           D T   +S +T L  LN+
Sbjct: 886 DVT--ALSKITMLEELNL 901



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 114/432 (26%), Positives = 185/432 (42%), Gaps = 79/432 (18%)

Query: 32   ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
            AL +L L    G+N  W  +   Q   L    LS + +TD  + H  +C NL +LD +FC
Sbjct: 610  ALNELNLSNCFGINAGWEALEKLQ--QLHVAILSNTHITDRDISHFSNCKNLITLDLSFC 667

Query: 92   IQISDGGLEHLRGLSNLTSLS-------------------FRRNNAITAQGMKAFAGLI- 131
             ++ D     +  LSN+T+L                      R   +  +G++    +I 
Sbjct: 668  NKLLD-----VTALSNITTLEELNLDSCSNIRKGLSVLGELPRLCVLNIKGVQLEDSVIV 722

Query: 132  ------NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
                  + V+L LE C +  G +  L  L+ LE LN+ +C+ +T S M  L  L  L+ L
Sbjct: 723  SLGNGNSFVRLSLENC-KGFGDVAPLSNLVTLEELNLHYCDKVT-SGMGTLGRLPQLRVL 780

Query: 186  QI--------------------------SCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTA 218
             +                          +C K+T  S IA L  L++L   N++ C    
Sbjct: 781  DLGRTQVDDNSLENICTCSSPLVSLNLSNCKKITSISAIASLTALEEL---NIDNCCNVT 837

Query: 219  ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTN 277
            +  +    L  L    L+  + +D+     S+  SL  LNL F  +ITD  +  L  +T 
Sbjct: 838  SGWNVFGTLHQLRVATLSNTRTNDENVRHVSECKSLNTLNLAFCKDITD--VTALSKITM 895

Query: 278  LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
            LE LNLD C    +G+  L  L   + L + +  +G    +  S L N +S+       S
Sbjct: 896  LEELNLDCCHNIRKGIETLGTLPKARILSMKECYMGDGYAQQCSILGNSKSLVKLNLERS 955

Query: 338  DG--SLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
             G  S++ L+ +++L+ L LD AR++       + S + L  L +   + TD      +N
Sbjct: 956  RGRISVKALSNVATLEELVLDHARKV-----CCIPSFSCLPRLRVLNLKYTDINGDVTKN 1010

Query: 395  F---KNLRSLEI 403
                K+LRSL +
Sbjct: 1011 ISESKSLRSLNL 1022



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 108/391 (27%), Positives = 173/391 (44%), Gaps = 36/391 (9%)

Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
            HL  +  L  L+      +T   ++  + L NL  L+L         +  +    KL  
Sbjct: 250 RHLFNIGTLEELAITDTMQLT--NIRGISRLTNLKCLELNSTNIDDSCVEEISACAKLSK 307

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
           L I  CN ITD+   P+S L  L+ L +S   +T  GI  L  L +L +L+L G PV   
Sbjct: 308 LCISKCNNITDA--TPISQLAALEELNLSNCHIT-KGIGTLGMLLRLRMLDLSGVPVEDN 364

Query: 220 CLDSLSALGSLFYLNLN-RCQLSD---------------DGCEKFSK-------IGSLKV 256
           CL  L   GSL  LN++ R QL+D               +GC + ++       +  L+V
Sbjct: 365 CLKDLCDCGSLERLNISYRIQLTDINPLSNATAIEELNLNGCRRITRGIGVVWALPKLRV 424

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
           L++    +++  L  +     L  ++LD+C G GD  L  L+ +  L+ L +       S
Sbjct: 425 LHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTL--LSSIVTLEELNIQKCADIIS 482

Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGL 374
           G+  L  L  L  +N+    IS      +    SL  LN+++  IT  + + AL ++  L
Sbjct: 483 GVGCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMES--ITGLSNVEALANILTL 540

Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
             L L G    D+G   L N   L+ L++ G    +  ++ +    ++  LNLS    +T
Sbjct: 541 EKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNLSHCWKMT 600

Query: 435 DKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           +  +  IS L  L  LN+SN    +AG   L
Sbjct: 601 N--VSHISSLEALNELNLSNCFGINAGWEAL 629



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 164/416 (39%), Gaps = 89/416 (21%)

Query: 65  SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
           SG  V D+ L  L DC +L+ L+ ++ IQ++D     +  LSN T++             
Sbjct: 357 SGVPVEDNCLKDLCDCGSLERLNISYRIQLTD-----INPLSNATAIE------------ 399

Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC------------------- 165
                     +L+L  C RI  G+  +  L KL  L++K                     
Sbjct: 400 ----------ELNLNGCRRITRGIGVVWALPKLRVLHMKDVHLSEPSLDSVGTGGPLVKV 449

Query: 166 ---NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
              NC    DM  LS +  L+ L I       SG+  L  L  L +LN++   +++    
Sbjct: 450 SLDNCAGFGDMTLLSSIVTLEELNIQKCADIISGVGCLGTLPYLRVLNIKEAHISSLDFT 509

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
            + A  SL  LN+          E  + + +++                L  +  LE L+
Sbjct: 510 GIGASKSLLQLNM----------ESITGLSNVEA---------------LANILTLEKLS 544

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS----FTGISD 338
           L  C   D G+  L  L  LK L+LS T   +  LR L     + S+NLS     T +S 
Sbjct: 545 LHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNLSHCWKMTNVS- 603

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
                ++ L +L  LNL      + G  AL  L  L    L    ITD   ++  N KNL
Sbjct: 604 ----HISSLEALNELNLSNCFGINAGWEALEKLQQLHVAILSNTHITDRDISHFSNCKNL 659

Query: 399 RSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
            +L++  C   L    + +I  L  L L     +C+   K L ++  L  L  LN+
Sbjct: 660 ITLDLSFCNKLLDVTALSNITTLEELNL----DSCSNIRKGLSVLGELPRLCVLNI 711



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 158/360 (43%), Gaps = 24/360 (6%)

Query: 116  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
            +  ITA+ +   +    LVKL   +C ++    V  K +  LE L +  C+      +K 
Sbjct: 1071 DTKITAKDIACLSSCKKLVKLKFFQCEKLSDVTVVYK-IQSLEELIVTSCS----DGLKG 1125

Query: 176  LSGLTNLKSLQ---ISCSKVTDSGIAYLKGLQKLTLLNLE-GCPVTAACLDSLSALGSLF 231
            L+ L  L  L+   +   + +D  +  +   + L  L++E G  +T   +  LS + SL 
Sbjct: 1126 LNALGTLPRLRFHHLRNVRGSDISVESIGTSKSLVRLHIEVGEELTD--ITPLSNITSLE 1183

Query: 232  YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
             L+L   +   +G     K+  LK L+LG + I+D  L  +    ++ SLNLDS      
Sbjct: 1184 ELSLRDYRKPPEGVGTLGKLPRLKSLDLGLSRISDSTLYCICLSRSITSLNLDS----SW 1239

Query: 292  GLVNLTGLCNLKCLE---LSDTQVGSSGLRHLSGLTNLESINLSFTGIS--DGSLRKLAG 346
             L +++ + NL  LE   L      +SG   LS L  L  +NL FT  +  DG    ++ 
Sbjct: 1240 KLTDISHISNLTALEELNLGGCYYITSGWEALSELPRLRVLNLEFTRATTRDGGYY-ISR 1298

Query: 347  LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
               L +LNL+   +TD   + L ++  L  L + G      G + L     LR L +   
Sbjct: 1299 CKYLVTLNLELCDMTDA--SCLANIKTLEELHIGGCDELTQGFSALFTLPQLRILNLICS 1356

Query: 407  GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGLRHL 465
             +TD  ++ I+   ++  LNLS    L D T L  I  +  L      + R  + G R L
Sbjct: 1357 LITDEDLREIQPPHTIEELNLSYCVELNDITPLGRIKSIKKLHLRQRHDVRRPTEGFRSL 1416



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 129/484 (26%), Positives = 197/484 (40%), Gaps = 120/484 (24%)

Query: 64   LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGLSN 107
            LS +   D  + H+ +C +L +L+  FC  I+D         LE L         +G+  
Sbjct: 854  LSNTRTNDENVRHVSECKSLNTLNLAFCKDITDVTALSKITMLEELNLDCCHNIRKGIET 913

Query: 108  LTSLSFRRNNAIT--------AQGMKAFAGLINLVKLDLERCT-RI-------------- 144
            L +L   R  ++         AQ         +LVKL+LER   RI              
Sbjct: 914  LGTLPKARILSMKECYMGDGYAQQCSILGNSKSLVKLNLERSRGRISVKALSNVATLEEL 973

Query: 145  ---HGGLV----NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSG 196
               H   V    +   L +L  LN+K+ + I     K +S   +L+SL +S C  VTD  
Sbjct: 974  VLDHARKVCCIPSFSCLPRLRVLNLKYTD-INGDVTKNISESKSLRSLNLSHCKWVTDIS 1032

Query: 197  IAY-------------------LKGLQKLTLLN---LEGCPVTAACLDSLSALGSLFYLN 234
            +                      + L KL LL    L    +TA  +  LS+   L  L 
Sbjct: 1033 VLSSLLTLEELNVNCCNGIRKGWESLGKLPLLRVAILSDTKITAKDIACLSSCKKLVKLK 1092

Query: 235  LNRCQ-LSD-------------------DGCEKFSKIGSLKVL------NLGFNEITDEC 268
              +C+ LSD                   DG +  + +G+L  L      N+  ++I+ E 
Sbjct: 1093 FFQCEKLSDVTVVYKIQSLEELIVTSCSDGLKGLNALGTLPRLRFHHLRNVRGSDISVES 1152

Query: 269  LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE---LSDTQVGSSGLRHLSGLTN 325
            +   K L  L         +G+E L ++T L N+  LE   L D +    G+  L  L  
Sbjct: 1153 IGTSKSLVRLH------IEVGEE-LTDITPLSNITSLEELSLRDYRKPPEGVGTLGKLPR 1205

Query: 326  LESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARI 384
            L+S++L  + ISD +L  +    S+ SLNLD+  ++TD  ++ +++LT L  L+L G   
Sbjct: 1206 LKSLDLGLSRISDSTLYCICLSRSITSLNLDSSWKLTD--ISHISNLTALEELNLGGCYY 1263

Query: 385  TDSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD------- 435
              SG   L     LR  +LE       D G  +I     L  LNL + C++TD       
Sbjct: 1264 ITSGWEALSELPRLRVLNLEFTRATTRDGGY-YISRCKYLVTLNL-ELCDMTDASCLANI 1321

Query: 436  KTLE 439
            KTLE
Sbjct: 1322 KTLE 1325



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 96/202 (47%), Gaps = 13/202 (6%)

Query: 150  NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTL 208
            ++  L  LE LN+  C  IT S  + LS L  L+ L +  ++ T   G  Y+   + L  
Sbjct: 1246 HISNLTALEELNLGGCYYIT-SGWEALSELPRLRVLNLEFTRATTRDGGYYISRCKYLVT 1304

Query: 209  LNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
            LNLE C +T A+CL ++  L  L   ++  C     G      +  L++LNL  + ITDE
Sbjct: 1305 LNLELCDMTDASCLANIKTLEEL---HIGGCDELTQGFSALFTLPQLRILNLICSLITDE 1361

Query: 268  CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS---DTQVGSSGLRHLSGLT 324
             L  ++    +E LNL  C +    +  L  + ++K L L    D +  + G R L  L 
Sbjct: 1362 DLREIQPPHTIEELNLSYC-VELNDITPLGRIKSIKKLHLRQRHDVRRPTEGFRSLLELP 1420

Query: 325  NLESINL-SFTGISDGS--LRK 343
             L  ++L +  G SD S  LRK
Sbjct: 1421 CLSWVDLDNVYGWSDVSCELRK 1442


>gi|124002318|ref|ZP_01687171.1| leucine-rich protein [Microscilla marina ATCC 23134]
 gi|123992147|gb|EAY31515.1| leucine-rich protein [Microscilla marina ATCC 23134]
          Length = 1282

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 130/440 (29%), Positives = 194/440 (44%), Gaps = 66/440 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
             L  ++L  +D+     +H      L+SL+  F    S   LE+L  L+ LT LS   N
Sbjct: 217 PRLKQLELEENDIKKIENLH--HLPQLKSLNLRFN---SFEKLENLDALTELTELSLGYN 271

Query: 117 NAITAQGMKA----------FAGLINLVKLD----LERCTRIHGGLVNLKGLMKLESLNI 162
                +G++           F  +  L  LD    LE+    H G+  ++ L KL  L  
Sbjct: 272 GISKIEGLEKLTKLKMLGLMFNRVTKLENLDTLTELEKLWMNHTGIKKIENLDKLTKLTH 331

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-ACL 221
               C   + ++ L  LT L SL +  +K+  S I  L+ L  LT L ++G  V     L
Sbjct: 332 LSLMCSKVTKIENLEALTQLTSLSLHATKI--SKIENLEALTNLTKLRVDGNKVAKIENL 389

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIG---SLKVLNLGFNEITDECLVHLKGLTNL 278
           D+L+ L  L         L  +   K   +G    L+ L+LG   IT   + +L+GL  L
Sbjct: 390 DNLTQLDDLM--------LGGNPISKIENLGHLIKLRKLDLGGLAITK--IENLEGLRTL 439

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGIS 337
           E L+L    I  E + NL GL  L+ LEL  T+V     L HL  LT L   +LS T I+
Sbjct: 440 EQLDLGGSQI--ETIENLEGLTGLQKLELRATKVSKIENLNHLPALTEL---DLSETAIT 494

Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD----SGAAYLR 393
              +  L GL  LK L+L   +IT   +  L  L+ L  L L  + ++     +G   LR
Sbjct: 495 --KIEGLTGLEGLKELSLSKNKITK--IENLAGLSKLEKLSLCASNLSKIENLTGLPKLR 550

Query: 394 N----------FKNLRSLEICGG-GLTDAGVKHIKD---LSSLTLLNLSQNCNLTDKTLE 439
                       +NLR L       L +  + HI+     + L  LNLSQN  +    +E
Sbjct: 551 ELCLEKNAIECLENLRGLPALKELDLNNNQITHIQPNALPTQLAELNLSQNQLI---KVE 607

Query: 440 LISGLTGLVSLNVSNSRITS 459
            ++G+TGL  L++S + I+ 
Sbjct: 608 HLAGVTGLTELDLSENNISK 627



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 111/385 (28%), Positives = 176/385 (45%), Gaps = 42/385 (10%)

Query: 80  CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLD 137
             NL++L     +++    +  +  L NLT L       N I+   ++    LI L KLD
Sbjct: 364 IENLEALTNLTKLRVDGNKVAKIENLDNLTQLDDLMLGGNPISK--IENLGHLIKLRKLD 421

Query: 138 LERCTRIHGGLV-----NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
           L       GGL      NL+GL  LE L++      T   ++ L GLT L+ L++  +KV
Sbjct: 422 L-------GGLAITKIENLEGLRTLEQLDLGGSQIET---IENLEGLTGLQKLELRATKV 471

Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
             S I  L  L  LT L+L    +T   ++ L+ L  L  L+L++ +++    E  + + 
Sbjct: 472 --SKIENLNHLPALTELDLSETAITK--IEGLTGLEGLKELSLSKNKITK--IENLAGLS 525

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
            L+ L+L  + ++   + +L GL  L  L L+   I  E L NL GL  LK L+L++ Q+
Sbjct: 526 KLEKLSLCASNLSK--IENLTGLPKLRELCLEKNAI--ECLENLRGLPALKELDLNNNQI 581

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
                  L   T L  +NLS   +    +  LAG++ L  L+L    I+   +     L 
Sbjct: 582 THIQPNALP--TQLAELNLSQNQLI--KVEHLAGVTGLTELDLSENNISK--IENFEDLP 635

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
            L  LDL   +IT      L    NLR + I    +T+     +     L  L+L QN  
Sbjct: 636 ALETLDLSYNKITR--LENLTALPNLREVNIYQNQITEIATDAVT--RQLQELDLEQN-- 689

Query: 433 LTDKTLELISGLTGLVSLNVSNSRI 457
               T+E++   TGL  ++V N++I
Sbjct: 690 -QISTIEILVNFTGLSQVDVGNNQI 713



 Score = 42.7 bits (99), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 81/181 (44%), Gaps = 28/181 (15%)

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           LTNL+ L+L+   I  E + NL  L  L+ L L    +   G  +L+ LT L  + LS  
Sbjct: 106 LTNLQYLDLEENDI--EVIENLDHLARLEYLNLRGNAIEKIG--NLNALTQLVHLELS-- 159

Query: 335 GISDGSLRKLAGLSSLKSL-NLDARQITDTGLAALTSLTGLTHLDL----FGARITDSGA 389
                SL ++  L+ LK L NLD R+     +  L  LT LT LDL    FG        
Sbjct: 160 ---SNSLERVENLNHLKHLQNLDLRENNIKKIENLAGLTALTRLDLGYNGFGK------I 210

Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449
             L N   L+ LE     L +  +K I++L  L  L   ++ NL   + E +  L  L  
Sbjct: 211 EGLHNLPRLKQLE-----LEENDIKKIENLHHLPQL---KSLNLRFNSFEKLENLDALTE 262

Query: 450 L 450
           L
Sbjct: 263 L 263


>gi|291239173|ref|XP_002739507.1| PREDICTED: F-box and leucine-rich repeat protein 20-like
           [Saccoglossus kowalevskii]
          Length = 794

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 123/463 (26%), Positives = 208/463 (44%), Gaps = 85/463 (18%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
           LQDL + +  GVND  M  IA   S LL +++S +++ D+ L  L + C+NLQ L   +C
Sbjct: 319 LQDLNISECSGVNDDMMKDIAEGCSILLYLNISHTNIADASLRVLSRCCANLQYLSLAYC 378

Query: 92  IQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
            + SD GL++L   RG   L  L       IT +G +  +          E C+ I    
Sbjct: 379 KRFSDKGLQYLSHSRGCRKLIYLDLSGCTQITQEGYRNMS----------EGCSNIQSIF 428

Query: 149 VNLKGLMKLESLNIKWCNC-------------ITDSDMKPLSGLTNLKSLQIS-CSKVTD 194
           +N    +K E L+     C             ++DS +K L+    L+ +++   ++++D
Sbjct: 429 LNDNNTLKDECLSAVTSKCHNIRSMSLLGTPHLSDSAIKTLALNRRLQKIRMEGNNRISD 488

Query: 195 SGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKI 251
            GI +L K    L  + L  CP +T   L SLS   ++  LN+  C ++SD G  +    
Sbjct: 489 LGIKHLAKYCHDLRHVYLSDCPRLTDTALKSLSNCRNVSVLNIADCVRISDSGVRQ---- 544

Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
                            +V       +  LNL +C                  + +SD  
Sbjct: 545 -----------------MVEGPSGPKIRELNLTNC------------------VRVSDVS 569

Query: 312 VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
           +    LR +    NL   +  F   I+D  +  L  + SL S+++    +TD+GLA+L +
Sbjct: 570 I----LRIMQKCHNLSYASFCFCEHITDAGVELLGSMPSLMSVDISGCNVTDSGLASLGN 625

Query: 371 LTGLTHLDLFGA---RITDSG-AAYLRNFKNLRSLEICG-GGLTDAGVKHIKD-LSSLTL 424
              L  LD+  A   +ITD G   + +  ++L  L++     LTD+ +K++      L +
Sbjct: 626 NPRL--LDVTIAECYQITDLGIQKFAQQCRDLERLDVSHCSSLTDSAIKNLAFCCRRLVV 683

Query: 425 LNLSQNCNLTDKTLELISGLTG-LVSLNVSNS-RITSAGLRHL 465
           LNL+    LTD +++ +SG+   L SL++S    ++   LR+L
Sbjct: 684 LNLTGCQLLTDLSIQYLSGVCHYLHSLDISGCVHVSDKSLRYL 726



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 123/475 (25%), Positives = 208/475 (43%), Gaps = 98/475 (20%)

Query: 22  EVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS-VDLSG-----SDVTDSGLI 75
           + +++ F  C + DL  G+   V   W   + +Q SSL S +DLS      +D T S LI
Sbjct: 239 KAAIKIFSFCDIVDL--GRCAMVCRSWK--MITQTSSLWSRLDLSTVRNRVTDQTVSTLI 294

Query: 76  HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
           H   C         + I ++      LRG ++L   SF                  NL  
Sbjct: 295 H--KCRP-------YLIHLN------LRGCAHLKKPSF------------------NLQD 321

Query: 136 LDLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKPLSGL-TNLKSLQIS-CSK 191
           L++  C+ ++  ++    +G   L  LNI   N I D+ ++ LS    NL+ L ++ C +
Sbjct: 322 LNISECSGVNDDMMKDIAEGCSILLYLNISHTN-IADASLRVLSRCCANLQYLSLAYCKR 380

Query: 192 VTDSGIAYL---KGLQKLTLLNLEGC-PVTAACLDSLSA----LGSLFYLNLNRCQLSDD 243
            +D G+ YL   +G +KL  L+L GC  +T     ++S     + S+F   LN      D
Sbjct: 381 FSDKGLQYLSHSRGCRKLIYLDLSGCTQITQEGYRNMSEGCSNIQSIF---LNDNNTLKD 437

Query: 244 GC--EKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLD-SCGIGDEGLVNLTGL 299
            C     SK  +++ ++L G   ++D  +  L     L+ + ++ +  I D G+ +L   
Sbjct: 438 ECLSAVTSKCHNIRSMSLLGTPHLSDSAIKTLALNRRLQKIRMEGNNRISDLGIKHLAKY 497

Query: 300 C-NLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSS---LKSL 353
           C +L+ + LSD  ++  + L+ LS   N+  +N++    ISD  +R++    S   ++ L
Sbjct: 498 CHDLRHVYLSDCPRLTDTALKSLSNCRNVSVLNIADCVRISDSGVRQMVEGPSGPKIREL 557

Query: 354 NLD---------------------------ARQITDTGLAALTSLTGLTHLDLFGARITD 386
           NL                               ITD G+  L S+  L  +D+ G  +TD
Sbjct: 558 NLTNCVRVSDVSILRIMQKCHNLSYASFCFCEHITDAGVELLGSMPSLMSVDISGCNVTD 617

Query: 387 SGAAYLRNFKNLRSLEICG-GGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLE 439
           SG A L N   L  + I     +TD G+ K  +    L  L++S   +LTD  ++
Sbjct: 618 SGLASLGNNPRLLDVTIAECYQITDLGIQKFAQQCRDLERLDVSHCSSLTDSAIK 672



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 152/310 (49%), Gaps = 35/310 (11%)

Query: 181 NLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLS-ALGSLFYLNLNR 237
           NL+ L IS CS V D  +  + +G   L  LN+    +  A L  LS    +L YL+L  
Sbjct: 318 NLQDLNISECSGVNDDMMKDIAEGCSILLYLNISHTNIADASLRVLSRCCANLQYLSLAY 377

Query: 238 CQ-LSDDGCEKFSK-IGSLKVLNL---GFNEITDECLVHL-KGLTNLESLNL-DSCGIGD 290
           C+  SD G +  S   G  K++ L   G  +IT E   ++ +G +N++S+ L D+  + D
Sbjct: 378 CKRFSDKGLQYLSHSRGCRKLIYLDLSGCTQITQEGYRNMSEGCSNIQSIFLNDNNTLKD 437

Query: 291 EGLVNLTGLC-NLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGL 347
           E L  +T  C N++ + L  T  +  S ++ L+    L+ I +     ISD  ++ LA  
Sbjct: 438 ECLSAVTSKCHNIRSMSLLGTPHLSDSAIKTLALNRRLQKIRMEGNNRISDLGIKHLAKY 497

Query: 348 -SSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEIC 404
              L+ + L D  ++TDT L +L++   ++ L++    RI+DSG   +    +       
Sbjct: 498 CHDLRHVYLSDCPRLTDTALKSLSNCRNVSVLNIADCVRISDSGVRQMVEGPS------- 550

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCN------------LTDKTLELISGLTGLVSLNV 452
           G  + +  + +   +S +++L + Q C+            +TD  +EL+  +  L+S+++
Sbjct: 551 GPKIRELNLTNCVRVSDVSILRIMQKCHNLSYASFCFCEHITDAGVELLGSMPSLMSVDI 610

Query: 453 SNSRITSAGL 462
           S   +T +GL
Sbjct: 611 SGCNVTDSGL 620



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 78/163 (47%), Gaps = 29/163 (17%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
            SL+SVD+SG +VTDSGL  L +   L  +    C QI+D G++                
Sbjct: 603 PSLMSVDISGCNVTDSGLASLGNNPRLLDVTIAECYQITDLGIQKF-------------- 648

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMK 174
               AQ  +      +L +LD+  C+ +    +        +L  LN+  C  +TD  ++
Sbjct: 649 ----AQQCR------DLERLDVSHCSSLTDSAIKNLAFCCRRLVVLNLTGCQLLTDLSIQ 698

Query: 175 PLSGLTN-LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC 214
            LSG+ + L SL IS C  V+D  + YL KG +++ +L +  C
Sbjct: 699 YLSGVCHYLHSLDISGCVHVSDKSLRYLRKGCKRIKVLVMLYC 741


>gi|150371828|dbj|BAF65703.1| internalin A [Listeria monocytogenes]
          Length = 526

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|428173790|gb|EKX42690.1| hypothetical protein GUITHDRAFT_73681, partial [Guillardia theta
           CCMP2712]
          Length = 439

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 166/386 (43%), Gaps = 37/386 (9%)

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK-----GLMK 156
             GLS+L +L    NN +++     F+GL  L  L L      H  L+NL      GL  
Sbjct: 14  FNGLSSLQTLELS-NNRLSSLSEGVFSGLSALQFLQLH-----HNALLNLPSNVFDGLSS 67

Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
           L+ L +   N ++        GL +L++L +S ++++        G   L  L+L    +
Sbjct: 68  LQQLYVH-NNVLSTLGPNTFKGLASLQNLDLSYNQLSTLPPDSFNGSSSLQTLSLFSNKI 126

Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
           T    D+   L  L YL L   QLS      FS +  L++L+L  N +T        GL+
Sbjct: 127 TNISSDAFRGLPGLKYLGLFDNQLSSLSEGVFSGLSGLQILSLYNNRVTSLPSNAFSGLS 186

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS---------SGLRHLS------ 321
            L+ L+L++  I D  L    GL  LK L L+  Q+ S         S L+ L       
Sbjct: 187 VLQELDLNNNQISDISLSAFNGLSGLKTLNLNSNQLSSLPSNAFFGLSALQQLQLDGNRI 246

Query: 322 ---------GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
                    GL+ LE +++SF  +         GLS+LK L++   QI+     A   LT
Sbjct: 247 SSISMDAFDGLSALEELHMSFNQLQTVLSSNFNGLSALKLLDIQNNQISSISSGAFNGLT 306

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
            LT L L G ++T   A      + L SL +    L          L  L L  L  + N
Sbjct: 307 ALTSLSLNGNKLTSIPAGVFDGLQYLESLILSSNQLECISSNAFASLLFLNLEELYLSYN 366

Query: 433 -LTDKTLELISGLTGLVSLNVSNSRI 457
            LT   L + +GL+ LV+L +SN+ +
Sbjct: 367 QLTSLPLGVFNGLSKLVTLTLSNNHV 392



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 152/323 (47%), Gaps = 31/323 (9%)

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP---VTAAC 220
           + + +T   +   +GL++L++L++S ++++        GL  L  L L       + +  
Sbjct: 2   YWSYLTSLPLGVFNGLSSLQTLELSNNRLSSLSEGVFSGLSALQFLQLHHNALLNLPSNV 61

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
            D LS+L  L+   ++   LS  G   F  + SL+ L+L +N+++        G ++L++
Sbjct: 62  FDGLSSLQQLY---VHNNVLSTLGPNTFKGLASLQNLDLSYNQLSTLPPDSFNGSSSLQT 118

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS---------SGLRHL----------- 320
           L+L S  I +       GL  LK L L D Q+ S         SGL+ L           
Sbjct: 119 LSLFSNKITNISSDAFRGLPGLKYLGLFDNQLSSLSEGVFSGLSGLQILSLYNNRVTSLP 178

Query: 321 ----SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
               SGL+ L+ ++L+   ISD SL    GLS LK+LNL++ Q++     A   L+ L  
Sbjct: 179 SNAFSGLSVLQELDLNNNQISDISLSAFNGLSGLKTLNLNSNQLSSLPSNAFFGLSALQQ 238

Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
           L L G RI+            L  L +    L      +   LS+L LL++ QN  ++  
Sbjct: 239 LQLDGNRISSISMDAFDGLSALEELHMSFNQLQTVLSSNFNGLSALKLLDI-QNNQISSI 297

Query: 437 TLELISGLTGLVSLNVSNSRITS 459
           +    +GLT L SL+++ +++TS
Sbjct: 298 SSGAFNGLTALTSLSLNGNKLTS 320



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 159/352 (45%), Gaps = 35/352 (9%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           +SL ++DLS + ++          S+LQ+L   F  +I++   +  RGL  L  L    +
Sbjct: 90  ASLQNLDLSYNQLSTLPPDSFNGSSSLQTLSL-FSNKITNISSDAFRGLPGLKYLGLF-D 147

Query: 117 NAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
           N +++     F+GL  L  L L   R T +        GL  L+ L++   N I+D  + 
Sbjct: 148 NQLSSLSEGVFSGLSGLQILSLYNNRVTSLPSNA--FSGLSVLQELDLN-NNQISDISLS 204

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
             +GL+ LK+L ++ ++++        GL  L  L L+G  +++  +D+   L +L  L+
Sbjct: 205 AFNGLSGLKTLNLNSNQLSSLPSNAFFGLSALQQLQLDGNRISSISMDAFDGLSALEELH 264

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD-------SCG 287
           ++  QL       F+ + +LK+L++  N+I+        GLT L SL+L+         G
Sbjct: 265 MSFNQLQTVLSSNFNGLSALKLLDIQNNQISSISSGAFNGLTALTSLSLNGNKLTSIPAG 324

Query: 288 IGDEGLVNLTGLC--------------------NLKCLELSDTQVGSSGLRHLSGLTNLE 327
           + D GL  L  L                     NL+ L LS  Q+ S  L   +GL+ L 
Sbjct: 325 VFD-GLQYLESLILSSNQLECISSNAFASLLFLNLEELYLSYNQLTSLPLGVFNGLSKLV 383

Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
           ++ LS   + +       GLSSLK LNL   ++    L     LT L  + L
Sbjct: 384 TLTLSNNHVKELPAGVFNGLSSLKFLNLGHNELESLPLNLFDGLTSLEQVTL 435



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 150/341 (43%), Gaps = 46/341 (13%)

Query: 15  VYSRCLTEVSLEAFR-----------DCALQDLCLGQYPGVND-KWMDVIASQGSSLLSV 62
           ++S  +T +S +AFR           D  L  L  G + G++  + + +  ++ +SL S 
Sbjct: 121 LFSNKITNISSDAFRGLPGLKYLGLFDNQLSSLSEGVFSGLSGLQILSLYNNRVTSLPSN 180

Query: 63  DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
             SG  V             LQ LD N   QISD  L    GLS L +L+   N  +++ 
Sbjct: 181 AFSGLSV-------------LQELDLN-NNQISDISLSAFNGLSGLKTLNLNSN-QLSSL 225

Query: 123 GMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
              AF GL  L +L L+  R + I   +    GL  LE L++ + N +        +GL+
Sbjct: 226 PSNAFFGLSALQQLQLDGNRISSI--SMDAFDGLSALEELHMSF-NQLQTVLSSNFNGLS 282

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT---AACLDSLSALGSLFYLNLNR 237
            LK L I  ++++        GL  LT L+L G  +T   A   D L  L SL    L+ 
Sbjct: 283 ALKLLDIQNNQISSISSGAFNGLTALTSLSLNGNKLTSIPAGVFDGLQYLESLI---LSS 339

Query: 238 CQLSDDGCEKFSKIGSLKVLNL-----GFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
            QL    C   +   SL  LNL      +N++T   L    GL+ L +L L +  + +  
Sbjct: 340 NQLE---CISSNAFASLLFLNLEELYLSYNQLTSLPLGVFNGLSKLVTLTLSNNHVKELP 396

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
                GL +LK L L   ++ S  L    GLT+LE + L +
Sbjct: 397 AGVFNGLSSLKFLNLGHNELESLPLNLFDGLTSLEQVTLEW 437


>gi|371942108|gb|AEX60866.1| truncated internaline [Listeria monocytogenes]
          Length = 491

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|290995863|ref|XP_002680502.1| predicted protein [Naegleria gruberi]
 gi|284094123|gb|EFC47758.1| predicted protein [Naegleria gruberi]
          Length = 350

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 108/220 (49%), Gaps = 1/220 (0%)

Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
           + F  +  L   ++ +  + D     +  +T L SLN+ +     + +     + NL CL
Sbjct: 119 DAFKLMKGLTTFDISYTYVHDREAKIISEMTQLTSLNVSNSIRIKKSIAYFREMNNLTCL 178

Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
            + +  +G    +H+S +  L  +++   GI     + ++ L  L  L++ +  I + G 
Sbjct: 179 NIGNNGIGVECAKHVSEMKQLTILHICGNGIKFEGAKFISELQQLTKLDVSSNNIGEQGA 238

Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
             ++ L  LT+LD++  RI   GA ++   K L  L I    +   G K+I ++  L  L
Sbjct: 239 KYISQLKQLTNLDIYSNRIGAQGAKHISEMKQLTRLNISYNDINVEGAKYISEMKQLINL 298

Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           N+++N N+ D+    ISG+  L +L + N+ I++AG +++
Sbjct: 299 NITKN-NIGDEGARHISGMNQLTNLFIGNNNISNAGFQNI 337



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 120/251 (47%), Gaps = 19/251 (7%)

Query: 134 VKLDLERCTRIHGGLV-NLKGLMKLESLN--IKWCNC----------------ITDSDMK 174
           V++D+ + +R+ G  + N+  +  L ++N  I++ +                 + D + K
Sbjct: 84  VRIDIGKMSRVQGQFLENIASVKALNAINHLIQYRDAFKLMKGLTTFDISYTYVHDREAK 143

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
            +S +T L SL +S S      IAY + +  LT LN+    +   C   +S +  L  L+
Sbjct: 144 IISEMTQLTSLNVSNSIRIKKSIAYFREMNNLTCLNIGNNGIGVECAKHVSEMKQLTILH 203

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           +    +  +G +  S++  L  L++  N I ++   ++  L  L +L++ S  IG +G  
Sbjct: 204 ICGNGIKFEGAKFISELQQLTKLDVSSNNIGEQGAKYISQLKQLTNLDIYSNRIGAQGAK 263

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
           +++ +  L  L +S   +   G +++S +  L ++N++   I D   R ++G++ L +L 
Sbjct: 264 HISEMKQLTRLNISYNDINVEGAKYISEMKQLINLNITKNNIGDEGARHISGMNQLTNLF 323

Query: 355 LDARQITDTGL 365
           +    I++ G 
Sbjct: 324 IGNNNISNAGF 334



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 102/217 (47%), Gaps = 7/217 (3%)

Query: 251 IGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
           I S+K LN   N +    +    +KGLT   + ++    + D     ++ +  L  L +S
Sbjct: 102 IASVKALN-AINHLIQYRDAFKLMKGLT---TFDISYTYVHDREAKIISEMTQLTSLNVS 157

Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
           ++      + +   + NL  +N+   GI     + ++ +  L  L++    I   G   +
Sbjct: 158 NSIRIKKSIAYFREMNNLTCLNIGNNGIGVECAKHVSEMKQLTILHICGNGIKFEGAKFI 217

Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
           + L  LT LD+    I + GA Y+   K L +L+I    +   G KHI ++  LT LN+S
Sbjct: 218 SELQQLTKLDVSSNNIGEQGAKYISQLKQLTNLDIYSNRIGAQGAKHISEMKQLTRLNIS 277

Query: 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
            N ++  +  + IS +  L++LN++ + I   G RH+
Sbjct: 278 YN-DINVEGAKYISEMKQLINLNITKNNIGDEGARHI 313


>gi|290996873|ref|XP_002681006.1| predicted protein [Naegleria gruberi]
 gi|284094629|gb|EFC48262.1| predicted protein [Naegleria gruberi]
          Length = 207

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 103/201 (51%)

Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
           +++LT LN+ G  +       +S +  L  L+++R ++  +G +  S++  L  LN+ +N
Sbjct: 1   MKQLTSLNIGGNEIGVEGAKYMSEMKHLTSLDIHRNEIGVEGSKFISEMKHLTSLNIYYN 60

Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
           EI  E   ++  + +L SLN+    IG EG   ++ +  L  L ++D ++G  G + +S 
Sbjct: 61  EIGVEGSKYISEMKHLTSLNIGDNEIGVEGSKYISEMKQLTSLNIADNEIGVEGSKFISE 120

Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
           + +L S+ + +  I     + ++ +  L SLN+   QI D G   ++ +  LT L++   
Sbjct: 121 MKHLTSLYIYYNEIGVEGAKFISEMKHLTSLNISGNQIGDEGSKFISEMKSLTSLNIGDN 180

Query: 383 RITDSGAAYLRNFKNLRSLEI 403
            I   GA ++   K L SL I
Sbjct: 181 EIGVEGAKFISGMKQLTSLNI 201



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 1/205 (0%)

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
           L  LN+G NEI  E   ++  + +L SL++    IG EG   ++ + +L  L +   ++G
Sbjct: 4   LTSLNIGGNEIGVEGAKYMSEMKHLTSLDIHRNEIGVEGSKFISEMKHLTSLNIYYNEIG 63

Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
             G +++S + +L S+N+    I     + ++ +  L SLN+   +I   G   ++ +  
Sbjct: 64  VEGSKYISEMKHLTSLNIGDNEIGVEGSKYISEMKQLTSLNIADNEIGVEGSKFISEMKH 123

Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
           LT L ++   I   GA ++   K+L SL I G  + D G K I ++ SLT LN+  N  +
Sbjct: 124 LTSLYIYYNEIGVEGAKFISEMKHLTSLNISGNQIGDEGSKFISEMKSLTSLNIGDN-EI 182

Query: 434 TDKTLELISGLTGLVSLNVSNSRIT 458
             +  + ISG+  L SLN+ ++ + 
Sbjct: 183 GVEGAKFISGMKQLTSLNIDDNELV 207



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 96/191 (50%), Gaps = 1/191 (0%)

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           +  L SLN+    IG EG   ++ + +L  L++   ++G  G + +S + +L S+N+ + 
Sbjct: 1   MKQLTSLNIGGNEIGVEGAKYMSEMKHLTSLDIHRNEIGVEGSKFISEMKHLTSLNIYYN 60

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            I     + ++ +  L SLN+   +I   G   ++ +  LT L++    I   G+ ++  
Sbjct: 61  EIGVEGSKYISEMKHLTSLNIGDNEIGVEGSKYISEMKQLTSLNIADNEIGVEGSKFISE 120

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
            K+L SL I    +   G K I ++  LT LN+S N  + D+  + IS +  L SLN+ +
Sbjct: 121 MKHLTSLYIYYNEIGVEGAKFISEMKHLTSLNISGN-QIGDEGSKFISEMKSLTSLNIGD 179

Query: 455 SRITSAGLRHL 465
           + I   G + +
Sbjct: 180 NEIGVEGAKFI 190



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 100/201 (49%)

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           +  L SL I  +++   G  Y+  ++ LT L++    +       +S +  L  LN+   
Sbjct: 1   MKQLTSLNIGGNEIGVEGAKYMSEMKHLTSLDIHRNEIGVEGSKFISEMKHLTSLNIYYN 60

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
           ++  +G +  S++  L  LN+G NEI  E   ++  +  L SLN+    IG EG   ++ 
Sbjct: 61  EIGVEGSKYISEMKHLTSLNIGDNEIGVEGSKYISEMKQLTSLNIADNEIGVEGSKFISE 120

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
           + +L  L +   ++G  G + +S + +L S+N+S   I D   + ++ + SL SLN+   
Sbjct: 121 MKHLTSLYIYYNEIGVEGAKFISEMKHLTSLNISGNQIGDEGSKFISEMKSLTSLNIGDN 180

Query: 359 QITDTGLAALTSLTGLTHLDL 379
           +I   G   ++ +  LT L++
Sbjct: 181 EIGVEGAKFISGMKQLTSLNI 201



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 102/227 (44%), Gaps = 26/227 (11%)

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
           +  LTSL+    N I  +G K  + + +L  LD+ R                        
Sbjct: 1   MKQLTSLNIG-GNEIGVEGAKYMSEMKHLTSLDIHR------------------------ 35

Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
            N I     K +S + +L SL I  +++   G  Y+  ++ LT LN+    +       +
Sbjct: 36  -NEIGVEGSKFISEMKHLTSLNIYYNEIGVEGSKYISEMKHLTSLNIGDNEIGVEGSKYI 94

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
           S +  L  LN+   ++  +G +  S++  L  L + +NEI  E    +  + +L SLN+ 
Sbjct: 95  SEMKQLTSLNIADNEIGVEGSKFISEMKHLTSLYIYYNEIGVEGAKFISEMKHLTSLNIS 154

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
              IGDEG   ++ + +L  L + D ++G  G + +SG+  L S+N+
Sbjct: 155 GNQIGDEGSKFISEMKSLTSLNIGDNEIGVEGAKFISGMKQLTSLNI 201



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 102/208 (49%), Gaps = 1/208 (0%)

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
           + +L SLNI   N I     K +S + +L SL I  +++   G  ++  ++ LT LN+  
Sbjct: 1   MKQLTSLNI-GGNEIGVEGAKYMSEMKHLTSLDIHRNEIGVEGSKFISEMKHLTSLNIYY 59

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
             +       +S +  L  LN+   ++  +G +  S++  L  LN+  NEI  E    + 
Sbjct: 60  NEIGVEGSKYISEMKHLTSLNIGDNEIGVEGSKYISEMKQLTSLNIADNEIGVEGSKFIS 119

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
            + +L SL +    IG EG   ++ + +L  L +S  Q+G  G + +S + +L S+N+  
Sbjct: 120 EMKHLTSLYIYYNEIGVEGAKFISEMKHLTSLNISGNQIGDEGSKFISEMKSLTSLNIGD 179

Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQIT 361
             I     + ++G+  L SLN+D  ++ 
Sbjct: 180 NEIGVEGAKFISGMKQLTSLNIDDNELV 207


>gi|18413537|emb|CAD21866.1| hypothetical leucine-rich repeat protein 1 (LRRP1) [Trypanosoma
           brucei]
          Length = 1393

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 114/432 (26%), Positives = 185/432 (42%), Gaps = 79/432 (18%)

Query: 32  ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
           AL +L L    G+N  W  +   Q   L    LS + +TD  + H  +C NL +LD +FC
Sbjct: 555 ALNELNLSNCFGINAGWEAIEKLQ--QLHVAILSNTHITDRDISHFSNCKNLITLDLSFC 612

Query: 92  IQISDGGLEHLRGLSNLTSLS-------------------FRRNNAITAQGMKAFAGLI- 131
            ++ D     +  LSN+T+L                      R   +  +G++    +I 
Sbjct: 613 NKLLD-----VTALSNITTLEELNLDSCSNIRKGLSVLGELPRLCVLNIKGVQLEDSVIV 667

Query: 132 ------NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
                 + V+L LE C +  G +  L  L+ LE LN+ +C+ +T S M  L  L  L+ L
Sbjct: 668 SLGNGNSFVRLSLENC-KGFGDVAPLSNLVTLEELNLHYCDKVT-SGMGTLGRLLQLRVL 725

Query: 186 QI--------------------------SCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTA 218
            +                          +C K+T  S IA L  L++L   N++ C    
Sbjct: 726 DLGRTQVDDNSLENICTCSSPLVSLNLSNCKKITSISAIASLTALEEL---NIDNCCNVT 782

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTN 277
           +  +    L  L    L+  + +D+     S+  SL  LNL F  +ITD  +  L  +T 
Sbjct: 783 SGWNVFGTLHQLRVATLSNTRTNDENIRHVSECKSLNTLNLAFCKDITD--VTALSKITM 840

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           LE LNLD C    +G+  L  L   + L + +  +G    +  S L N +S+       S
Sbjct: 841 LEELNLDCCHNIRKGIETLGTLPKARILSMKECYMGDGYAQQCSILGNSKSLVKLNLERS 900

Query: 338 DG--SLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            G  S++ L+ +++L+ L LD AR++       + S + L  L +   + TD      +N
Sbjct: 901 RGRISVKALSNVATLEELVLDHARKV-----CCIPSFSCLPRLRVLNLKYTDINGDVTKN 955

Query: 395 F---KNLRSLEI 403
               K+LRSL +
Sbjct: 956 ISESKSLRSLNL 967



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 173/380 (45%), Gaps = 60/380 (15%)

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
           ++A A ++ L KL L  CT I  G+  L  L +L+ L++   N   +S ++ L     + 
Sbjct: 476 VEALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNES-LRSLCLSQTVV 534

Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           SL +S C K+T+  ++++  L+ L  LNL  C    A  +++  L  L    L+   ++D
Sbjct: 535 SLNLSHCWKMTN--VSHISSLEALNELNLSNCFGINAGWEAIEKLQQLHVAILSNTHITD 592

Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV---NLTG 298
                FS   +L  L+L F N++ D  +  L  +T LE LNLDSC    +GL     L  
Sbjct: 593 RDISHFSNCKNLITLDLSFCNKLLD--VTALSNITTLEELNLDSCSNIRKGLSVLGELPR 650

Query: 299 LC--NLKCLELSDTQV-----GSSGLR-------------HLSGLTNLESINLSF----- 333
           LC  N+K ++L D+ +     G+S +R              LS L  LE +NL +     
Sbjct: 651 LCVLNIKGVQLEDSVIVSLGNGNSFVRLSLENCKGFGDVAPLSNLVTLEELNLHYCDKVT 710

Query: 334 -------------------TGISDGSLRKLAGLSS-LKSLNL-DARQITDTGLAALTSLT 372
                              T + D SL  +   SS L SLNL + ++IT   ++A+ SLT
Sbjct: 711 SGMGTLGRLLQLRVLDLGRTQVDDNSLENICTCSSPLVSLNLSNCKKIT--SISAIASLT 768

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
            L  L++       SG         LR   +      D  ++H+ +  SL  LNL+   +
Sbjct: 769 ALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRTNDENIRHVSECKSLNTLNLAFCKD 828

Query: 433 LTDKTLELISGLTGLVSLNV 452
           +TD T   +S +T L  LN+
Sbjct: 829 ITDVT--ALSKITMLEELNL 846



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 107/393 (27%), Positives = 177/393 (45%), Gaps = 36/393 (9%)

Query: 94  ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
           I +    HL  +  L  L+      +T   ++  + L NL  L+L         +  +  
Sbjct: 189 IDNNDARHLFNIGTLEELAITDTMQLT--NIRGISRLTNLKCLELNSTNIDDSCVRRICA 246

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
            +KL  L++  CN ITD+   P+S L+ L+ L +S   +T  GI  L  L +L +L+L G
Sbjct: 247 CVKLSKLSVSECNNITDA--TPISQLSALEELNLSNCHIT-KGIGTLGMLLRLRILDLSG 303

Query: 214 CPVTAACLDSLSALGSLFYLNLN-RCQLSD---------------DGCEKFSK------- 250
            PV   CL  L   GSL  LN++ R QL+D               +GC + ++       
Sbjct: 304 VPVEDNCLKDLCDCGSLERLNISYRIQLTDINPLSNATAIEELNLNGCRRITRGIGVVWA 363

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD 309
           +  L+VL++    +++  L  +     L  ++LD+C G GD  L  L+ +  L+ L +  
Sbjct: 364 LPKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTL--LSSIVTLEELNIQK 421

Query: 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAAL 368
                SG+  L  L  L  +N+    IS      +    SL  LN+++  IT  + + AL
Sbjct: 422 CADIISGVGCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMES--ITGLSNVEAL 479

Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
            ++  L  L L G    D+G   L N   L+ L++ G    +  ++ +    ++  LNLS
Sbjct: 480 ANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNLS 539

Query: 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
               +T+  +  IS L  L  LN+SN    +AG
Sbjct: 540 HCWKMTN--VSHISSLEALNELNLSNCFGINAG 570



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 108/419 (25%), Positives = 167/419 (39%), Gaps = 89/419 (21%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           +DLSG  V D+ L  L DC +L+ L+ ++ IQ++D     +  LSN T++          
Sbjct: 299 LDLSGVPVEDNCLKDLCDCGSLERLNISYRIQLTD-----INPLSNATAIE--------- 344

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC---------------- 165
                        +L+L  C RI  G+  +  L KL  L++K                  
Sbjct: 345 -------------ELNLNGCRRITRGIGVVWALPKLRVLHMKDVHLSEPSLDSVGTGGPL 391

Query: 166 ------NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
                 NC    DM  LS +  L+ L I       SG+  L  L  L +LN++   +++ 
Sbjct: 392 VKVSLDNCAGFGDMTLLSSIVTLEELNIQKCADIISGVGCLGTLPYLRVLNIKEAHISSL 451

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
               + A  SL  LN+          E  + + +++                L  +  LE
Sbjct: 452 DFTGIGASKSLLQLNM----------ESITGLSNVEA---------------LANILTLE 486

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS----FTG 335
            L+L  C   D G+  L  L  LK L+LS T   +  LR L     + S+NLS     T 
Sbjct: 487 KLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNLSHCWKMTN 546

Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
           +S      ++ L +L  LNL      + G  A+  L  L    L    ITD   ++  N 
Sbjct: 547 VS-----HISSLEALNELNLSNCFGINAGWEAIEKLQQLHVAILSNTHITDRDISHFSNC 601

Query: 396 KNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
           KNL +L++  C   L    + +I  L  L L     +C+   K L ++  L  L  LN+
Sbjct: 602 KNLITLDLSFCNKLLDVTALSNITTLEELNL----DSCSNIRKGLSVLGELPRLCVLNI 656



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 160/360 (44%), Gaps = 24/360 (6%)

Query: 116  NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
            +  ITA+ +   +    LVKL   RC ++    V  K +  LE L +  C+      +K 
Sbjct: 1016 DTKITAKDIACLSSCKKLVKLKFFRCKKLSDVTVVYK-IQSLEELIVTSCS----DGLKG 1070

Query: 176  LSGLTNLKSLQ---ISCSKVTDSGIAYLKGLQKLTLLNLE-GCPVTAACLDSLSALGSLF 231
            L+ L  L  L+   +   + +D  +  +   + L  L++E G  +T   +  LS + SL 
Sbjct: 1071 LNALGTLPRLRFHHLRNVRGSDISVESIGTSKSLVRLHIEVGEELTD--ITPLSNITSLE 1128

Query: 232  YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
             L+L   +   +G     K+  LK L+LG + I+D  L  +    ++ SLNLDS      
Sbjct: 1129 ELSLRDYRKPPEGVGTLGKLPRLKSLDLGLSRISDSTLYCICLSRSITSLNLDS----SW 1184

Query: 292  GLVNLTGLCNLKCLE---LSDTQVGSSGLRHLSGLTNLESINLSFTGIS--DGSLRKLAG 346
             L +++ + NL  LE   L      +SG + LS L  L  +NL FT ++  DG    ++ 
Sbjct: 1185 KLTDISHISNLTALEELNLGGCYYITSGWKALSELPRLRVLNLEFTRVTTRDGGYY-ISR 1243

Query: 347  LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
               L +LNL+   +TD   + L ++  L  L + G      G + L     LR L +   
Sbjct: 1244 CKYLVTLNLELCDMTDA--SCLANIKTLEELHIGGCDELTQGFSALFTLPQLRILNLICS 1301

Query: 407  GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGLRHL 465
             +TD  ++ I+   ++  LNLS    L D T L  I  +  L      + R  + G R L
Sbjct: 1302 LITDEDLREIQPPHTIEELNLSYCVELNDITPLGRIKSIKKLHLRQRHDVRRPTEGFRSL 1361



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 130/484 (26%), Positives = 197/484 (40%), Gaps = 120/484 (24%)

Query: 64   LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGLSN 107
            LS +   D  + H+ +C +L +L+  FC  I+D         LE L         +G+  
Sbjct: 799  LSNTRTNDENIRHVSECKSLNTLNLAFCKDITDVTALSKITMLEELNLDCCHNIRKGIET 858

Query: 108  LTSLSFRRNNAIT--------AQGMKAFAGLINLVKLDLERCT-RI-------------- 144
            L +L   R  ++         AQ         +LVKL+LER   RI              
Sbjct: 859  LGTLPKARILSMKECYMGDGYAQQCSILGNSKSLVKLNLERSRGRISVKALSNVATLEEL 918

Query: 145  ---HGGLV----NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSG 196
               H   V    +   L +L  LN+K+ + I     K +S   +L+SL +S C  VTD  
Sbjct: 919  VLDHARKVCCIPSFSCLPRLRVLNLKYTD-INGDVTKNISESKSLRSLNLSHCKWVTDIS 977

Query: 197  IAY-------------------LKGLQKLTLLN---LEGCPVTAACLDSLSALGSLFYLN 234
            +                      + L KL LL    L    +TA  +  LS+   L  L 
Sbjct: 978  VLSSLLTLEELNVNCCNGIRKGWESLGKLPLLRVAILSDTKITAKDIACLSSCKKLVKLK 1037

Query: 235  LNRCQ-LSD-------------------DGCEKFSKIGSLKVL------NLGFNEITDEC 268
              RC+ LSD                   DG +  + +G+L  L      N+  ++I+ E 
Sbjct: 1038 FFRCKKLSDVTVVYKIQSLEELIVTSCSDGLKGLNALGTLPRLRFHHLRNVRGSDISVES 1097

Query: 269  LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE---LSDTQVGSSGLRHLSGLTN 325
            +   K L  L         +G+E L ++T L N+  LE   L D +    G+  L  L  
Sbjct: 1098 IGTSKSLVRLH------IEVGEE-LTDITPLSNITSLEELSLRDYRKPPEGVGTLGKLPR 1150

Query: 326  LESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARI 384
            L+S++L  + ISD +L  +    S+ SLNLD+  ++TD  ++ +++LT L  L+L G   
Sbjct: 1151 LKSLDLGLSRISDSTLYCICLSRSITSLNLDSSWKLTD--ISHISNLTALEELNLGGCYY 1208

Query: 385  TDSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD------- 435
              SG   L     LR  +LE       D G  +I     L  LNL + C++TD       
Sbjct: 1209 ITSGWKALSELPRLRVLNLEFTRVTTRDGGY-YISRCKYLVTLNL-ELCDMTDASCLANI 1266

Query: 436  KTLE 439
            KTLE
Sbjct: 1267 KTLE 1270



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 97/202 (48%), Gaps = 13/202 (6%)

Query: 150  NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTL 208
            ++  L  LE LN+  C  IT S  K LS L  L+ L +  ++VT   G  Y+   + L  
Sbjct: 1191 HISNLTALEELNLGGCYYIT-SGWKALSELPRLRVLNLEFTRVTTRDGGYYISRCKYLVT 1249

Query: 209  LNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
            LNLE C +T A+CL ++  L  L   ++  C     G      +  L++LNL  + ITDE
Sbjct: 1250 LNLELCDMTDASCLANIKTLEEL---HIGGCDELTQGFSALFTLPQLRILNLICSLITDE 1306

Query: 268  CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS---DTQVGSSGLRHLSGLT 324
             L  ++    +E LNL  C +    +  L  + ++K L L    D +  + G R L  L 
Sbjct: 1307 DLREIQPPHTIEELNLSYC-VELNDITPLGRIKSIKKLHLRQRHDVRRPTEGFRSLLELP 1365

Query: 325  NLESINL-SFTGISDGS--LRK 343
             L  ++L +  G SD S  LRK
Sbjct: 1366 CLSWVDLDNVYGWSDVSCELRK 1387


>gi|298360020|gb|ADI77589.1| truncated internalin A [Listeria monocytogenes]
 gi|298360528|gb|ADI77843.1| truncated internalin A [Listeria monocytogenes]
          Length = 459

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|294358393|gb|ADE73849.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 123/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL + G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKEIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 119/248 (47%), Gaps = 41/248 (16%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
             L  L +LT L  LD+   +++D   + L    NL SL      ++D  +  +  L++L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253

Query: 423 TLLNLSQN-----------CNLTD--------KTLELISGLTGLVSLNVSNSRITS---- 459
             L+L+ N            NLTD          L  +SGLT L  L +  ++I++    
Sbjct: 254 DELSLNGNQLKEIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPL 313

Query: 460 AGLRHLNH 467
           AGL  L +
Sbjct: 314 AGLTALTN 321


>gi|112959464|gb|ABI27259.1| internalin A [Listeria monocytogenes]
          Length = 698

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 122/388 (31%), Positives = 180/388 (46%), Gaps = 60/388 (15%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN IT 
Sbjct: 1   INFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT- 53

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
             +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ LT 
Sbjct: 54  -DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTT 106

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRC 238
           L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+LN  
Sbjct: 107 LERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGN 159

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
           QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  L G
Sbjct: 160 QLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAG 213

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK----------- 343
           L  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K           
Sbjct: 214 LTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKV 271

Query: 344 -----LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN---- 394
                LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N    
Sbjct: 272 SDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIP 329

Query: 395 --FKNLRSLEICGGGLTDAGVKHIKDLS 420
              KN+    I    ++D G     D++
Sbjct: 330 NTVKNVTGALIAPATISDGGSYAEPDIT 357



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 108/211 (51%), Gaps = 24/211 (11%)

Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
           N+I D  +  L  LTNL  L L +  I D + L NLT   NL  LELS   +  S +  L
Sbjct: 28  NQIAD--ITPLANLTNLTGLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISAL 80

Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
           SGLTNL+   LSF G     L+ LA L++L+ L++ + +++D  ++ L  LT L  L   
Sbjct: 81  SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 135

Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
             +I+D     L    NL  L + G  L D G   +  L++LT L+L+ N       L  
Sbjct: 136 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 188

Query: 441 ISGLTGLVSLNVSNSRITS----AGLRHLNH 467
           +SGLT L  L +  ++I++    AGL  L +
Sbjct: 189 LSGLTKLTELKLGANQISNISPLAGLTALTN 219


>gi|158429248|pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
          Length = 466

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 67  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 120

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KPL
Sbjct: 121 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 172

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 173 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 225

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 226 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 279

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 280 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 337

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 338 ANNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 395

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 396 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 428



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 61  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 113

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 114 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 168

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 169 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 226

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 227 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 281

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 282 LAGLTALTN 290


>gi|27574254|pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes)  E-Cadherin (Human)
           Recognition Complex
 gi|27574256|pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
           Domain, Uncomplexed
 gi|27574257|pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
           Domain, Uncomplexed
 gi|27574258|pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
           Domain, Uncomplexed
          Length = 466

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 68  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 121

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KPL
Sbjct: 122 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 173

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 174 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 226

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 227 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 280

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 281 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 338

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 339 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 396

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 397 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 429



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 62  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 114

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 115 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 169

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 170 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 227

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 228 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 282

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 283 LAGLTALTN 291


>gi|326430775|gb|EGD76345.1| variable lymphocyte receptor [Salpingoeca sp. ATCC 50818]
          Length = 1124

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 153/359 (42%), Gaps = 32/359 (8%)

Query: 104 GLSNLTSLSFRRNNAITAQGMKA--FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
           GLS LT+L+  R   +  Q + A  F GL +L +LDL              GL  +ESLN
Sbjct: 229 GLSALTTLNLNR---VPLQTLSAQTFQGLSSLTELDLSNKKIAAIPTQAFVGLSSIESLN 285

Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
           ++  N ++      +S +  L SL +S   +T         L  L  + L+G P+     
Sbjct: 286 LQG-NPLSKLSEGAISDMPKLTSLDLSNLAITAIPARSFDNLAALGNITLQGNPIAQLTN 344

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
            S S++ SL  L+L+RC+L+      F+    L  L L  N IT      L+GL+ L + 
Sbjct: 345 ASFSSVPSLHTLDLSRCKLTSVPAAAFTAATRLSALTLARNAITTIAARALRGLSKLTAF 404

Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
           ++ +                L+ L  S  Q          GLT+L ++NL+ T  +    
Sbjct: 405 DISNNP--------------LRALPASIFQ----------GLTSLATLNLAHTNCTLLPP 440

Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
             L  L +L S++     +          L  L HLDL  ARIT      L N   L  L
Sbjct: 441 ALLTPLHALTSISAAGTPLRAIATGTFDGLPALQHLDLSNARITALAPHSLHNLPRLHDL 500

Query: 402 EICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            + G  L +     +  DLSSLT L+LS    +       +SG T L +L + ++ IT+
Sbjct: 501 ALGGNPLANISSHALGGDLSSLTTLDLSA-LRIAAIAPHAMSGATNLTTLLLDHNAITA 558



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 105/411 (25%), Positives = 171/411 (41%), Gaps = 27/411 (6%)

Query: 75  IHLKDCSNLQSLDF--NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
           +   D + +  LDF  N    +S    ++   L +  +     NN IT+    AFA L  
Sbjct: 76  LQFDDGTPIAQLDFSNNLISMVSAAAFQNAVSLQHTLTALILDNNPITSIEAGAFATLTA 135

Query: 133 LVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
           L  L++    ++ G L  N+   +          N +         GLT+L+SL ++ + 
Sbjct: 136 LNHLNMSSL-KLAGALSGNMFSTLTALLTLQLDGNQLDTLPANAFDGLTSLQSLNLANNP 194

Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
           ++       +GL  L  L+L G P++     S + L +L  LNLNR  L     + F  +
Sbjct: 195 ISILNADTFQGLSSLLSLSLAGAPISTLSSSSFAGLSALTTLNLNRVPLQTLSAQTFQGL 254

Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
            SL  L+L   +I         GL+++ESLNL    +       ++ +  L  L+LS+  
Sbjct: 255 SSLTELDLSNKKIAAIPTQAFVGLSSIESLNLQGNPLSKLSEGAISDMPKLTSLDLSNLA 314

Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
           + +   R    L  L +I L    I+  +    + + SL +L+L   ++T    AA T+ 
Sbjct: 315 ITAIPARSFDNLAALGNITLQGNPIAQLTNASFSSVPSLHTLDLSRCKLTSVPAAAFTAA 374

Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ-N 430
           T L+ L L    IT   A  LR    L + +I    L        + L+SL  LNL+  N
Sbjct: 375 TRLSALTLARNAITTIAARALRGLSKLTAFDISNNPLRALPASIFQGLTSLATLNLAHTN 434

Query: 431 C-----------------NLTDKTLELIS-----GLTGLVSLNVSNSRITS 459
           C                 +     L  I+     GL  L  L++SN+RIT+
Sbjct: 435 CTLLPPALLTPLHALTSISAAGTPLRAIATGTFDGLPALQHLDLSNARITA 485



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 110/447 (24%), Positives = 178/447 (39%), Gaps = 71/447 (15%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQG-----SSLLSVDLSGSDVTDSGLIHLKDCSNLQSL- 86
           L DL LG  P  N      I+S       SSL ++DLS   +       +   +NL +L 
Sbjct: 497 LHDLALGGNPLAN------ISSHALGGDLSSLTTLDLSALRIAAIAPHAMSGATNLTTLL 550

Query: 87  -DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
            D N    I+    +   GLS L +L    N A+      AF GL  L  LDL R     
Sbjct: 551 LDHN---AITALAADTFAGLSRLATLRITSNPALATLAGGAFDGLSALATLDLSRLPVAE 607

Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQISCSKVTDSGIAYLKGL 203
                  G+  L+S+ +   +  T   ++P   + L+++ ++ ++   ++         L
Sbjct: 608 LPSHVFAGMSSLQSVVLTGVDLHT---LQPNAFANLSHVAAISLAGMSLSSLPSHAFGAL 664

Query: 204 QKLTLLNLEGCP-------------------------VTAACLDSLSALGSLFYLNLNRC 238
             LT L+L+  P                         +TA    + S   ++  LNL   
Sbjct: 665 PALTSLSLDNNPLASLNTDTFAGPLPLLTTLDLSSHGITALPPRTFSGATAVRSLNLAHN 724

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN--L 296
            ++    + F  + S   L L  N I         GL  L SL+L +  +   G+V+   
Sbjct: 725 AITTIAPDAFLGLSSATQLVLAGNPIAHVSAGSFAGLGALTSLDLSTSAL--TGIVSGSF 782

Query: 297 TGLCNLKCLELSDTQVGSSGLRHL-----SGLTNLESINLS---FTGISDGSLRKLAGLS 348
           +GL NL  L      V +  LRHL     +GL++L  ++++    T + DG L  L    
Sbjct: 783 SGLANLTTLT-----VDTPHLRHLFPGSFTGLSSLHHLSIANTCVTALPDGVLSPLV--- 834

Query: 349 SLKSLNLDARQITDTGLAALT--SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG- 405
            +++L+L    +    ++ LT   L+ L  LDL    +T  G    R     R+L +   
Sbjct: 835 HVRTLSLRNSSLAGAAVSTLTFDGLSQLVALDLSNNDMTAIGDKAFRPLSATRTLNLSSN 894

Query: 406 --GGLTDAGVKHIKDLSSLTLLNLSQN 430
             G  T A     K + +L +L+LS N
Sbjct: 895 ALGNFTQAASHVFKGMKALQVLDLSSN 921



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 125/319 (39%), Gaps = 33/319 (10%)

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA----CLDSLSALGSLF 231
           +SG TNL +L +  + +T        GL +L  L +   P  A       D LSAL +L 
Sbjct: 540 MSGATNLTTLLLDHNAITALAADTFAGLSRLATLRITSNPALATLAGGAFDGLSALATL- 598

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNL-----------GFNEITDECLVHLKG------ 274
             +L+R  +++     F+ + SL+ + L            F  ++    + L G      
Sbjct: 599 --DLSRLPVAELPSHVFAGMSSLQSVVLTGVDLHTLQPNAFANLSHVAAISLAGMSLSSL 656

Query: 275 -------LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNL 326
                  L  L SL+LD+  +         G   L       +  + +   R  SG T +
Sbjct: 657 PSHAFGALPALTSLSLDNNPLASLNTDTFAGPLPLLTTLDLSSHGITALPPRTFSGATAV 716

Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
            S+NL+   I+  +     GLSS   L L    I      +   L  LT LDL  + +T 
Sbjct: 717 RSLNLAHNAITTIAPDAFLGLSSATQLVLAGNPIAHVSAGSFAGLGALTSLDLSTSALTG 776

Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
             +       NL +L +    L          LSSL  L+++  C +T     ++S L  
Sbjct: 777 IVSGSFSGLANLTTLTVDTPHLRHLFPGSFTGLSSLHHLSIANTC-VTALPDGVLSPLVH 835

Query: 447 LVSLNVSNSRITSAGLRHL 465
           + +L++ NS +  A +  L
Sbjct: 836 VRTLSLRNSSLAGAAVSTL 854


>gi|223698748|gb|ACN19072.1| truncated internalin A [Listeria monocytogenes]
 gi|223698961|gb|ACN19214.1| truncated internalin A [Listeria monocytogenes]
          Length = 491

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 13  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KPL
Sbjct: 67  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 118

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 341

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           S DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L 
Sbjct: 5   SIDGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLT 57

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
           NL  L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+
Sbjct: 58  NLTGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQV 112

Query: 361 TDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRS 400
           TD  L  L +LT L  LD+   +++D S  A L N +                   NL  
Sbjct: 113 TD--LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE 170

Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS- 459
           L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++ 
Sbjct: 171 LSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNI 225

Query: 460 ---AGLRHL 465
              AGL  L
Sbjct: 226 SPLAGLTAL 234


>gi|290989491|ref|XP_002677371.1| Hypothetical protein NAEGRDRAFT_67509 [Naegleria gruberi]
 gi|284090978|gb|EFC44627.1| Hypothetical protein NAEGRDRAFT_67509 [Naegleria gruberi]
          Length = 350

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 134/292 (45%), Gaps = 10/292 (3%)

Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
            N + ++ +K  SG  NL  L +  + +      +L  L +LT LN++   +    +DS+
Sbjct: 56  INILLETLLKSFSG-RNLTKLDLRRNFIHAKLAEHLGNLHQLTDLNVDDSFIVEPAIDSI 114

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
             L  L  L++N   L     +   ++  L VL++  N +       L+ L+NL  LN+ 
Sbjct: 115 RYLTKLSTLSINSNNLKTKELKIIKEMKQLTVLSIAKNSMQSGGAKLLRNLSNLTILNIS 174

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS------FTGISD 338
           +  IG+EG   L  +  L  L +S T + S G+ +L+   NL  +N S      F+    
Sbjct: 175 NNRIGNEGWKYLCSMKQLTKLNISGTNISSEGISYLTNFPNLTELNFSGNTSLRFSQKVQ 234

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L +L  L+ L    +    I D  L  +  L  LT L L    + D+ A ++   + L
Sbjct: 235 EQLSELKYLTKLVINYIHPIPIDD--LQYIHKLEKLTSLSLKSNFMYDASAIHISKCEKL 292

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
             L++    L+DA  +    L +L  LN+S+N  L+ K +EL+  +  L SL
Sbjct: 293 TYLDVAINNLSDAAAEAFSHLPNLKYLNISENY-LSKKGVELLRNMPQLTSL 343



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 97/212 (45%), Gaps = 3/212 (1%)

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
           L+L  N I  +   HL  L  L  LN+D   I +  + ++  L  L  L ++   + +  
Sbjct: 75  LDLRRNFIHAKLAEHLGNLHQLTDLNVDDSFIVEPAIDSIRYLTKLSTLSINSNNLKTKE 134

Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
           L+ +  +  L  ++++   +  G  + L  LS+L  LN+   +I + G   L S+  LT 
Sbjct: 135 LKIIKEMKQLTVLSIAKNSMQSGGAKLLRNLSNLTILNISNNRIGNEGWKYLCSMKQLTK 194

Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGG---LTDAGVKHIKDLSSLTLLNLSQNCNL 433
           L++ G  I+  G +YL NF NL  L   G      +    + + +L  LT L ++    +
Sbjct: 195 LNISGTNISSEGISYLTNFPNLTELNFSGNTSLRFSQKVQEQLSELKYLTKLVINYIHPI 254

Query: 434 TDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
               L+ I  L  L SL++ ++ +  A   H+
Sbjct: 255 PIDDLQYIHKLEKLTSLSLKSNFMYDASAIHI 286



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 89/195 (45%), Gaps = 4/195 (2%)

Query: 94  ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
           +  GG + LR LSNLT L+   NN I  +G K    +  L KL++        G+  L  
Sbjct: 154 MQSGGAKLLRNLSNLTILNIS-NNRIGNEGWKYLCSMKQLTKLNISGTNISSEGISYLTN 212

Query: 154 LMKLESLNIKWCNCITDSD--MKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLN 210
              L  LN      +  S    + LS L  L  L I+    +    + Y+  L+KLT L+
Sbjct: 213 FPNLTELNFSGNTSLRFSQKVQEQLSELKYLTKLVINYIHPIPIDDLQYIHKLEKLTSLS 272

Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
           L+   +  A    +S    L YL++    LSD   E FS + +LK LN+  N ++ + + 
Sbjct: 273 LKSNFMYDASAIHISKCEKLTYLDVAINNLSDAAAEAFSHLPNLKYLNISENYLSKKGVE 332

Query: 271 HLKGLTNLESLNLDS 285
            L+ +  L SL  +S
Sbjct: 333 LLRNMPQLTSLIYES 347



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 3/157 (1%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDF--NFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           L  +++SG++++  G+ +L +  NL  L+F  N  ++ S    E L  L  LT L     
Sbjct: 192 LTKLNISGTNISSEGISYLTNFPNLTELNFSGNTSLRFSQKVQEQLSELKYLTKLVINYI 251

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           + I    ++    L  L  L L+         +++    KL  L++   N ++D+  +  
Sbjct: 252 HPIPIDDLQYIHKLEKLTSLSLKSNFMYDASAIHISKCEKLTYLDVA-INNLSDAAAEAF 310

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
           S L NLK L IS + ++  G+  L+ + +LT L  E 
Sbjct: 311 SHLPNLKYLNISENYLSKKGVELLRNMPQLTSLIYES 347


>gi|300868028|ref|ZP_07112666.1| Small GTP-binding protein (fragment) [Oscillatoria sp. PCC 6506]
 gi|300333948|emb|CBN57844.1| Small GTP-binding protein (fragment) [Oscillatoria sp. PCC 6506]
          Length = 376

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 169/343 (49%), Gaps = 50/343 (14%)

Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
           +A A L  L +LDL+ C ++      +  L +L+ LN+   N +T+   + ++ L+ L++
Sbjct: 37  EAIATLTQLQRLDLD-CNQLTKVPEAIASLSQLQILNLS-NNKLTEVP-EAIASLSQLQT 93

Query: 185 LQISCSKVTD--SGIAYLKGLQKLTLLN--LEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           L +  +K+T+    IA L  LQKL L N  L   P      +++++L  L  LNLN  QL
Sbjct: 94  LNLIYNKLTEVPEAIATLTQLQKLYLSNNQLTQVP------EAIASLSQLQTLNLNFNQL 147

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTG 298
           ++   E  + +  L+ LNL +N++T E    +  LT LE L L++  +    E + +LT 
Sbjct: 148 TE-VPEAIASLSQLRRLNLSYNQLT-EVPETIASLTQLEWLYLNNNQLRKVPEAIASLT- 204

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
              L+ L LSD +                      T + +     +A LS L+SLNL   
Sbjct: 205 --QLQRLSLSDNE---------------------LTAVPEA----IASLSQLRSLNLSNN 237

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
           Q+T+    A+ SLT L  L L G ++T+   A + +   L+ L + G  LT A  + I  
Sbjct: 238 QLTELP-EAIASLTQLQELYLVGNQLTELPEA-IASLTQLQELYLVGNELT-AVPEAIAS 294

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
           L+ L  L+LS N  LT    E I+ LT L  L++S +++T   
Sbjct: 295 LTQLQRLSLSDN-ELT-AVPEAIASLTHLQGLDLSYNQLTQVP 335


>gi|219821381|gb|ACL37832.1| internalin A [Listeria monocytogenes]
 gi|219821384|gb|ACL37834.1| internalin A [Listeria monocytogenes]
          Length = 741

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 40  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 94  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +K++D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 146 ANLTTLERLDISSNKLSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKV 368

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 34  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 86

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 87  TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 141

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 142 --LKPLANLTTLERLDISSNKLSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 199

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 254

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 255 LAGLTALTN 263


>gi|441473145|emb|CCQ22899.1| Internalin-A [Listeria monocytogenes N53-1]
          Length = 455

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 121/385 (31%), Positives = 181/385 (47%), Gaps = 60/385 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426

Query: 394 N------FKNLRSLEICGGGLTDAG 412
           N       KN+    I    ++D G
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGG 451



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|384252153|gb|EIE25630.1| hypothetical protein COCSUDRAFT_83637 [Coccomyxa subellipsoidea
           C-169]
          Length = 433

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 186/380 (48%), Gaps = 25/380 (6%)

Query: 32  ALQ-DLCLGQ-YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFN 89
           ALQ  +CL + +P +   +MD    +G     V+++   VT++G +       L++L   
Sbjct: 56  ALQHPVCLAERFPELQALFMD--GCEG-----VNMTNEQVTEAGRLRY-----LKTLSLA 103

Query: 90  FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGL 148
            C   +D GL  L  +  L  LS  + NA+T++ +       +L+ LDL +C  +    +
Sbjct: 104 GCRACTDKGLAGLAVIEGLQKLSLSKCNALTSRTLDLLQTSSSLISLDLGQCAWVDDSSM 163

Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLT 207
             L     L+ L++  C  +T+  ++ ++ L  +++L +S   ++ D+G+  L  +  L 
Sbjct: 164 ALLCNSASLKQLSLADCVRLTNRGVQSVAKLKCIEALNLSGLREIDDAGVEALAAVTSLR 223

Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEIT 265
            LNL+ C        +L+ LG L  L++  C  ++DD     S + SL+ L L   ++IT
Sbjct: 224 ELNLDRCGQVRGL--TLAKLGGLHKLSMCDCPCIADDSLGCLSGVTSLEDLKLDMCDKIT 281

Query: 266 DECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSD-TQVGSSGLRHLS-G 322
           D+    L  ++ LE L+L  C   D E +  L+ L  L+ L LS    + + GL HL+ G
Sbjct: 282 DKGAGALASMSALEDLDLHRCERLDCEAMRRLSALGQLRSLRLSGCVYIKAEGLGHLARG 341

Query: 323 LTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLF 380
              L  ++L+   GI D  ++ LA +  L++LN++  + ++D G A L +   +  + + 
Sbjct: 342 CPLLSRLDLAGCVGIKDEGMQALAEMQHLQALNINQCKYVSDAGAAVLATSVSIRDVFVL 401

Query: 381 GARITDSGAAYLRNFKNLRS 400
              I+  G   L++   L+ 
Sbjct: 402 TTNISQHGLQLLQDALGLQP 421



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 162/355 (45%), Gaps = 49/355 (13%)

Query: 156 KLESLNIKWCNCI--TDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLE 212
           +L++L +  C  +  T+  +     L  LK+L ++ C   TD G+A L  ++ L  L+L 
Sbjct: 69  ELQALFMDGCEGVNMTNEQVTEAGRLRYLKTLSLAGCRACTDKGLAGLAVIEGLQKLSLS 128

Query: 213 GC-PVTAACLDSLSALGSLFYLNLNRCQLSDD--------------------------GC 245
            C  +T+  LD L    SL  L+L +C   DD                          G 
Sbjct: 129 KCNALTSRTLDLLQTSSSLISLDLGQCAWVDDSSMALLCNSASLKQLSLADCVRLTNRGV 188

Query: 246 EKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGL---- 299
           +  +K+  ++ LNL G  EI D  +  L  +T+L  LNLD CG +    L  L GL    
Sbjct: 189 QSVAKLKCIEALNLSGLREIDDAGVEALAAVTSLRELNLDRCGQVRGLTLAKLGGLHKLS 248

Query: 300 -CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDA 357
            C+  C+  +D  +G      LSG+T+LE + L     I+D     LA +S+L+ L+L  
Sbjct: 249 MCDCPCI--ADDSLGC-----LSGVTSLEDLKLDMCDKITDKGAGALASMSALEDLDLHR 301

Query: 358 RQITD-TGLAALTSLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICGG-GLTDAGV 413
            +  D   +  L++L  L  L L G   I   G  +L R    L  L++ G  G+ D G+
Sbjct: 302 CERLDCEAMRRLSALGQLRSLRLSGCVYIKAEGLGHLARGCPLLSRLDLAGCVGIKDEGM 361

Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHA 468
           + + ++  L  LN++Q   ++D    +++    +  + V  + I+  GL+ L  A
Sbjct: 362 QALAEMQHLQALNINQCKYVSDAGAAVLATSVSIRDVFVLTTNISQHGLQLLQDA 416


>gi|195585785|ref|XP_002082659.1| GD25110 [Drosophila simulans]
 gi|194194668|gb|EDX08244.1| GD25110 [Drosophila simulans]
          Length = 522

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 147/308 (47%), Gaps = 51/308 (16%)

Query: 35  DLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLK-DCSNLQSLDFNFCI 92
           D+ LG    + D  +  IA    +L +++L G  ++T++GL+ +      L+ L+   C 
Sbjct: 249 DMNLGHAFSITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCW 308

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-- 150
            ISD G+ HL G S  T+                  G + L  L L+ C R+    +   
Sbjct: 309 HISDQGIGHLAGFSRETA-----------------EGNLQLEYLGLQDCQRLSDEALGHI 351

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTL 208
            +GL  L+S+N+ +C  +TDS +K L+ +  L+ L + SC  ++D G+AYL +G   +  
Sbjct: 352 AQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINS 411

Query: 209 LNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
           L++  C  ++   L  ++  L  L  L+LN+CQ++D G  K +                 
Sbjct: 412 LDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIA----------------- 454

Query: 267 ECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGL 323
                 K L  LE+LN+  C  I D+GL  L   L NLK ++L   TQ+ S G+  +  L
Sbjct: 455 ------KALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKL 508

Query: 324 TNLESINL 331
             L+ +NL
Sbjct: 509 PKLQKLNL 516



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 164/347 (47%), Gaps = 64/347 (18%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
           RG+  +  LS RR+      G+ A   L                   NL G   +  +N+
Sbjct: 212 RGIKKVQILSLRRSLKDLVLGVPALTSL-------------------NLSGCFNVADMNL 252

Query: 163 KWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCPVTA- 218
                ITD+ +  ++  L NL++L++  C  +T++G+  +  GL+KL  LNL  C   + 
Sbjct: 253 GHAFSITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISD 312

Query: 219 ------ACLDSLSALGSL--FYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDE 267
                 A     +A G+L   YL L  CQ LSD+     ++ + SLK +NL F   +TD 
Sbjct: 313 QGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDS 372

Query: 268 CLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
            L HL  +  LE LNL SC  I D G+  LT               G SG         +
Sbjct: 373 GLKHLARMPKLEQLNLRSCDNISDIGMAYLTE--------------GGSG---------I 409

Query: 327 ESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-A 382
            S+++SF   ISD +L  +A GL  L+SL+L+  QITD G+  +  +L  L +L++   +
Sbjct: 410 NSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCS 469

Query: 383 RITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
           RITD G   L  +  NL+++++ G   L+  G+  I  L  L  LNL
Sbjct: 470 RITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 516



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 115/208 (55%), Gaps = 19/208 (9%)

Query: 274 GLTNLESLNLDSCG-IGDEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-G 322
           GL  L+ LNL SC  I D+G+ +L G           L+ L L D Q +    L H++ G
Sbjct: 295 GLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQG 354

Query: 323 LTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL 379
           LT+L+SINLSF   ++D  L+ LA +  L+ LNL +   I+D G+A LT   +G+  LD+
Sbjct: 355 LTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDV 414

Query: 380 -FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDK 436
            F  +I+D    ++ +    LRSL +    +TD G+  I K L  L  LN+ Q   +TDK
Sbjct: 415 SFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRITDK 474

Query: 437 TLE-LISGLTGLVSLNVSN-SRITSAGL 462
            L+ L   LT L ++++   ++++S G+
Sbjct: 475 GLQTLAEDLTNLKTIDLYGCTQLSSKGI 502



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 97/210 (46%), Gaps = 31/210 (14%)

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE---SIN 330
           G+  L SLNL  C        N+  +       ++DT +G    +HL  L  LE     N
Sbjct: 232 GVPALTSLNLSGC-------FNVADMNLGHAFSITDTSLGRIA-QHLRNLETLELGGCCN 283

Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLT-----HLDLFG--- 381
           ++ TG+    L    GL  LK LNL +   I+D G+  L   +  T      L+  G   
Sbjct: 284 ITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQD 339

Query: 382 -ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
             R++D    ++ +   +L+S  L  C   +TD+G+KH+  +  L  LNL    N++D  
Sbjct: 340 CQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLRSCDNISDIG 398

Query: 438 LE-LISGLTGLVSLNVSN-SRITSAGLRHL 465
           +  L  G +G+ SL+VS   +I+   L H+
Sbjct: 399 MAYLTEGGSGINSLDVSFCDKISDQALTHI 428


>gi|290971663|ref|XP_002668605.1| predicted protein [Naegleria gruberi]
 gi|284082078|gb|EFC35861.1| predicted protein [Naegleria gruberi]
          Length = 968

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 87/174 (50%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           +G +  S++  L  L++G N+I DE    +  +  L SL +    IGDEG+ ++  +  L
Sbjct: 776 EGAKSISEMKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGVKSIRKMKQL 835

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
               +S  + G +G + +S +  L S+++S+  I D   + ++ L  L SL +    I  
Sbjct: 836 TSFNISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSLTISGNSIGV 895

Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
            G  +++ +  LT LD+   +I D GA  +   K L+SL I    + D G K I
Sbjct: 896 EGAKSISEMKQLTLLDIGENQIGDEGAKSISELKQLKSLTISENQIGDEGAKFI 949



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 1/178 (0%)

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           IG EG  +++ +  L  L++ + Q+G  G + +S +  L S+ +S   I D  ++ +  +
Sbjct: 773 IGVEGAKSISEMKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGVKSIRKM 832

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
             L S N+   +    G   ++ +  LT LD+    I D GA  +   K L SL I G  
Sbjct: 833 KQLTSFNISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSLTISGNS 892

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           +   G K I ++  LTLL++ +N  + D+  + IS L  L SL +S ++I   G + +
Sbjct: 893 IGVEGAKSISEMKQLTLLDIGEN-QIGDEGAKSISELKQLKSLTISENQIGDEGAKFI 949



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 101/205 (49%), Gaps = 2/205 (0%)

Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
           F+ LI+  K ++E    + G   ++  + +L SL+I   N I D   K +S +  L SL 
Sbjct: 758 FSKLISEEKEEMEHSIGVEGA-KSISEMKQLTSLDIG-ENQIGDEGAKSISEMKQLTSLT 815

Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
           IS + + D G+  ++ +++LT  N+       A    +S +  L  L+++  ++ D+G +
Sbjct: 816 ISGNSIGDEGVKSIRKMKQLTSFNISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAK 875

Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
             S++  L  L +  N I  E    +  +  L  L++    IGDEG  +++ L  LK L 
Sbjct: 876 SISELKQLTSLTISGNSIGVEGAKSISEMKQLTLLDIGENQIGDEGAKSISELKQLKSLT 935

Query: 307 LSDTQVGSSGLRHLSGLTNLESINL 331
           +S+ Q+G  G + + G+    S  L
Sbjct: 936 ISENQIGDEGAKFIIGMKQYGSFKL 960



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 1/170 (0%)

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           +  L SL++    IGDEG  +++ +  L  L +S   +G  G++ +  +  L S N+S+ 
Sbjct: 784 MKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGVKSIRKMKQLTSFNISYN 843

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
                  + ++ +  L SL++   +I D G  +++ L  LT L + G  I   GA  +  
Sbjct: 844 ETGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSLTISGNSIGVEGAKSISE 903

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
            K L  L+I    + D G K I +L  L  L +S+N  + D+  + I G+
Sbjct: 904 MKQLTLLDIGENQIGDEGAKSISELKQLKSLTISEN-QIGDEGAKFIIGM 952



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 24/191 (12%)

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           K +S +  L SL I  +++ D G   +  +++LT L + G  +    + S+  +  L   
Sbjct: 779 KSISEMKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGVKSIRKMKQLTSF 838

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           N++  +    G +  S++  L  L++ +NEI DE    +  L  L SL +    IG EG 
Sbjct: 839 NISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSLTISGNSIGVEGA 898

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
            +++ +  L  L++ + Q+G  G + +S L                          LKSL
Sbjct: 899 KSISEMKQLTLLDIGENQIGDEGAKSISEL------------------------KQLKSL 934

Query: 354 NLDARQITDTG 364
            +   QI D G
Sbjct: 935 TISENQIGDEG 945



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 78/164 (47%), Gaps = 1/164 (0%)

Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
           E  +  +G  G + +S +  L S+++    I D   + ++ +  L SL +    I D G+
Sbjct: 767 EEMEHSIGVEGAKSISEMKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGV 826

Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
            ++  +  LT  ++       +GA ++   K L SL+I    + D G K I +L  LT L
Sbjct: 827 KSIRKMKQLTSFNISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSL 886

Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
            +S N ++  +  + IS +  L  L++  ++I   G + ++  +
Sbjct: 887 TISGN-SIGVEGAKSISEMKQLTLLDIGENQIGDEGAKSISELK 929



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 8/163 (4%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+   L S+ +SG+ + D G+  ++    L S + ++  +    G + +  +  LTSL  
Sbjct: 806 SEMKQLTSLTISGNSIGDEGVKSIRKMKQLTSFNISYN-ETGVAGAKFISEMKQLTSLDI 864

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
             N  I  +G K+ + L  L  L +   +    G  ++  + +L  L+I   N I D   
Sbjct: 865 SYNE-IGDEGAKSISELKQLTSLTISGNSIGVEGAKSISEMKQLTLLDIG-ENQIGDEGA 922

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ-----KLTLLNL 211
           K +S L  LKSL IS +++ D G  ++ G++     KL L+NL
Sbjct: 923 KSISELKQLKSLTISENQIGDEGAKFIIGMKQYGSFKLRLVNL 965


>gi|313485081|gb|ADR53011.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--FFGNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 122/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+ +   F G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL---FFGNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|223698952|gb|ACN19208.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 13  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KPL
Sbjct: 67  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--FFGNQVTD--LKPL 118

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 341

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 121/250 (48%), Gaps = 24/250 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 5   SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 60

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+ +   F G    
Sbjct: 61  GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL---FFGNQVT 113

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 224

Query: 460 ----AGLRHL 465
               AGL  L
Sbjct: 225 ISPLAGLTAL 234


>gi|385800049|ref|YP_005836453.1| hypothetical protein [Halanaerobium praevalens DSM 2228]
 gi|309389413|gb|ADO77293.1| conserved repeat domain protein [Halanaerobium praevalens DSM 2228]
          Length = 2607

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 110/333 (33%), Positives = 155/333 (46%), Gaps = 47/333 (14%)

Query: 32   ALQDLCLGQYPGVNDK----WMDVIASQGSSLLSVDLS-GSDVTDSGLIHLKDCSNLQSL 86
            A +D     YPG+NDK    +  VI    S+L    L  G D    G I L +  NL +L
Sbjct: 1017 AFKDQSGNAYPGMNDKTSWNFKTVINIPDSNLKQQILDRGIDNNGDGEISLSESVNLYTL 1076

Query: 87   DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG 146
              +F  +ISD     L GL + TSL                       KL L    +I  
Sbjct: 1077 K-SFYTEISD-----LSGLEHFTSLD----------------------KLALYGGKKI-S 1107

Query: 147  GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
             L  L+ L  L SL +   N I + D   L+ LTNL  L +S +K++D  I+ L  L KL
Sbjct: 1108 DLSPLQNLTNLNSLTLTE-NVINNIDY--LANLTNLTRLDLSSNKISD--ISVLANLTKL 1162

Query: 207  TLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
            T L L    +T  + L  L  L  L +L+L   ++S+   +  S +  L  L+LG   + 
Sbjct: 1163 TELVLGSNIITDESDLSVLENLTELEHLSLEENEISN--IDSLSNLSKLNYLHLGSTNVE 1220

Query: 266  DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
            D  +  LK LT L  LNL+S  I DE L  L+   +L  L L  +    S +  ++ LTN
Sbjct: 1221 D--ISSLKNLTALNFLNLNSTYINDEDLTILSNFKSLTELYLQSSNDKISDISVVADLTN 1278

Query: 326  LESINLSFTGISDGSLRKLAGLSSLKSL-NLDA 357
            L+ + L +  ISD  +R L+ L+ L SL NL+A
Sbjct: 1279 LKYLYLGYNEISD--IRALSDLTKLTSLYNLNA 1309



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 82/280 (29%), Positives = 126/280 (45%), Gaps = 38/280 (13%)

Query: 176  LSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
            LS   NL +L+   ++++D SG+ +   L KL L            +  LS L +L   N
Sbjct: 1067 LSESVNLYTLKSFYTEISDLSGLEHFTSLDKLALYG-------GKKISDLSPLQNL--TN 1117

Query: 235  LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGL 293
            LN   L+++            V+N          + +L  LTNL  L+L S  I D   L
Sbjct: 1118 LNSLTLTEN------------VIN---------NIDYLANLTNLTRLDLSSNKISDISVL 1156

Query: 294  VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
             NLT L  L  +  S+     S L  L  LT LE ++L    IS+  +  L+ LS L  L
Sbjct: 1157 ANLTKLTEL--VLGSNIITDESDLSVLENLTELEHLSLEENEISN--IDSLSNLSKLNYL 1212

Query: 354  NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
            +L +  + D  +++L +LT L  L+L    I D     L NFK+L  L +       + +
Sbjct: 1213 HLGSTNVED--ISSLKNLTALNFLNLNSTYINDEDLTILSNFKSLTELYLQSSNDKISDI 1270

Query: 414  KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
              + DL++L  L L  N     + L  ++ LT L +LN +
Sbjct: 1271 SVVADLTNLKYLYLGYNEISDIRALSDLTKLTSLYNLNAN 1310


>gi|22347568|gb|AAM95929.1| internalin A precursor [Listeria monocytogenes]
          Length = 743

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 42  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 95

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 96  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +K++D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 148 ANLTTLERLDISSNKLSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 312

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 313 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKV 370

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 371 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 36  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 88

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 89  TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 143

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 144 --LKPLANLTTLERLDISSNKLSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 201

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 202 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 256

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 257 LAGLTALTN 265


>gi|87311421|ref|ZP_01093541.1| hypothetical protein DSM3645_25297 [Blastopirellula marina DSM
           3645]
 gi|87285833|gb|EAQ77747.1| hypothetical protein DSM3645_25297 [Blastopirellula marina DSM
           3645]
          Length = 192

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 1/135 (0%)

Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
            +E+SD  V  + L+ LS  T L+ I L  T ++D +   L  L  L+ +NL    ITD 
Sbjct: 35  SIEVSDRTVSPAELQLLSRATQLQRIRLDQTPLADPAAAVLGALPELQFVNLPQADITDA 94

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
           GLA +  L  LT L +    +TD+G A LR+  +LR L +    LTDA ++HI +++SL 
Sbjct: 95  GLAEIAKLPQLTQLRIGSPHLTDAGIAALRDNPSLRFLHLLQTPLTDAALEHIAEINSLE 154

Query: 424 LLNLSQNCNLTDKTL 438
              L Q  N+T+  L
Sbjct: 155 SFYLDQ-TNITEPGL 168



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 1/143 (0%)

Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
           +SI +S   +S   L+ L+  + L+ + LD   + D   A L +L  L  ++L  A ITD
Sbjct: 34  DSIEVSDRTVSPAELQLLSRATQLQRIRLDQTPLADPAAAVLGALPELQFVNLPQADITD 93

Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
           +G A +     L  L I    LTDAG+  ++D  SL  L+L Q   LTD  LE I+ +  
Sbjct: 94  AGLAEIAKLPQLTQLRIGSPHLTDAGIAALRDNPSLRFLHLLQTP-LTDAALEHIAEINS 152

Query: 447 LVSLNVSNSRITSAGLRHLNHAR 469
           L S  +  + IT  GL  L   R
Sbjct: 153 LESFYLDQTNITEPGLAKLIERR 175



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 1/148 (0%)

Query: 150 NLKGLMKLESLNIKWCN-CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
            L+ ++  ES +I+  +  ++ ++++ LS  T L+ +++  + + D   A L  L +L  
Sbjct: 24  QLRQVIAGESDSIEVSDRTVSPAELQLLSRATQLQRIRLDQTPLADPAAAVLGALPELQF 83

Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
           +NL    +T A L  ++ L  L  L +    L+D G        SL+ L+L    +TD  
Sbjct: 84  VNLPQADITDAGLAEIAKLPQLTQLRIGSPHLTDAGIAALRDNPSLRFLHLLQTPLTDAA 143

Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNL 296
           L H+  + +LES  LD   I + GL  L
Sbjct: 144 LEHIAEINSLESFYLDQTNITEPGLAKL 171



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 61/129 (47%)

Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
           V+ A L  LS    L  + L++  L+D        +  L+ +NL   +ITD  L  +  L
Sbjct: 43  VSPAELQLLSRATQLQRIRLDQTPLADPAAAVLGALPELQFVNLPQADITDAGLAEIAKL 102

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
             L  L + S  + D G+  L    +L+ L L  T +  + L H++ + +LES  L  T 
Sbjct: 103 PQLTQLRIGSPHLTDAGIAALRDNPSLRFLHLLQTPLTDAALEHIAEINSLESFYLDQTN 162

Query: 336 ISDGSLRKL 344
           I++  L KL
Sbjct: 163 ITEPGLAKL 171



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 59/130 (45%)

Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
            S+   L+ + L    + D     L  L  L+ +NL    I D GL  +  L  L  L +
Sbjct: 51  LSRATQLQRIRLDQTPLADPAAAVLGALPELQFVNLPQADITDAGLAEIAKLPQLTQLRI 110

Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
               +  +G+  L    +L  ++L  T ++D +L  +A ++SL+S  LD   IT+ GLA 
Sbjct: 111 GSPHLTDAGIAALRDNPSLRFLHLLQTPLTDAALEHIAEINSLESFYLDQTNITEPGLAK 170

Query: 368 LTSLTGLTHL 377
           L       H+
Sbjct: 171 LIERRPQLHV 180



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 64/137 (46%)

Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
           S+++S   V+ + +  L    +L  + L+  P+       L AL  L ++NL +  ++D 
Sbjct: 35  SIEVSDRTVSPAELQLLSRATQLQRIRLDQTPLADPAAAVLGALPELQFVNLPQADITDA 94

Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
           G  + +K+  L  L +G   +TD  +  L+   +L  L+L    + D  L ++  + +L+
Sbjct: 95  GLAEIAKLPQLTQLRIGSPHLTDAGIAALRDNPSLRFLHLLQTPLTDAALEHIAEINSLE 154

Query: 304 CLELSDTQVGSSGLRHL 320
              L  T +   GL  L
Sbjct: 155 SFYLDQTNITEPGLAKL 171


>gi|29423725|gb|AAO73556.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 41  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 94

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 95  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 146

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +K++D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 147 ANLTTLERLDISSNKLSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 199

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 200 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 253

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 254 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 311

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 312 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKV 369

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 370 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 402



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 35  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 87

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 88  TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 142

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 143 --LKPLANLTTLERLDISSNKLSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 200

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 201 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 255

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 256 LAGLTALTN 264


>gi|167861956|gb|ACA05677.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 122/389 (31%), Positives = 181/389 (46%), Gaps = 56/389 (14%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
           LT L+ L IS +KV+D S +A L  L+ L   N +   +T      L  L +L  L+LN 
Sbjct: 206 LTTLERLDISSNKVSDISVLARLPTLESLIATNNQISDITP-----LGILTNLDELSLNG 260

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
            QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  L 
Sbjct: 261 NQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLA 314

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK---------- 343
           GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K          
Sbjct: 315 GLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK 372

Query: 344 ------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN--- 394
                 LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N   
Sbjct: 373 VSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANVSI 430

Query: 395 ---FKNLRSLEICGGGLTDAGVKHIKDLS 420
               KN+    I    ++D G     D++
Sbjct: 431 PNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 166/385 (43%), Gaps = 95/385 (24%)

Query: 91  CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
            I  S+G       ++  T ++    +A  A+ MK   G  N+     + DL++ T +  
Sbjct: 24  WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83

Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
             + +K +  LE LN                   NL  +  S +++TD  I  LK L KL
Sbjct: 84  DRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD--ITPLKDLTKL 122

Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
                         +D L          +N  Q++D      + + +L  L L  N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156

Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
             +  LK LTNL  L L S  I D  +  L+GL NL+ L   + QV  + L+ L+ LT L
Sbjct: 157 --IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPLANLTTL 209

Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
           E +++S   +SD S+  LA L +L+SL     QI+D     +T L  LT+LD        
Sbjct: 210 ERLDISSNKVSDISV--LARLPTLESLIATNNQISD-----ITPLGILTNLD-------- 254

Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
                         L + G  L D G   +  L++LT L+L+ N       L  +SGLT 
Sbjct: 255 -------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTK 296

Query: 447 LVSLNVSNSRITS----AGLRHLNH 467
           L  L +  ++I++    AGL  L +
Sbjct: 297 LTELKLGANQISNISPLAGLTALTN 321


>gi|290983780|ref|XP_002674606.1| predicted protein [Naegleria gruberi]
 gi|284088197|gb|EFC41862.1| predicted protein [Naegleria gruberi]
          Length = 232

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 116/226 (51%), Gaps = 1/226 (0%)

Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
           + +LT L++    +  A  + +  L +L  LN+    LS +G E   K+  L VLN+ FN
Sbjct: 1   MNRLTKLSIGFNRLHDAGAEIIGQLTTLTELNVAENFLSHEGAESICKLTQLTVLNINFN 60

Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
            I D    ++  L+ L +L++ S  I +EG  +++ L  L  L+L+D ++   G ++L  
Sbjct: 61  GIGDLGAAYIGELSKLTNLSIASNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLGE 120

Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
           L+ L+ +NL    I D   + ++ L +L  LNL    I + G+ ++  L  LT L++   
Sbjct: 121 LSQLKKLNLLANYIQDKGAKSVSQLENLTELNLTRNSIQNEGIKSIIELPLLTKLNISQN 180

Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
           RI++  A  +   K L+ L      + + G K + ++  L +L+LS
Sbjct: 181 RISNEEAQLISGMKQLKELVATHTQIDNEGAKKLHEM-ELDILDLS 225



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 110/217 (50%), Gaps = 1/217 (0%)

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
           +  L  L++GFN + D     +  LT L  LN+    +  EG  ++  L  L  L ++  
Sbjct: 1   MNRLTKLSIGFNRLHDAGAEIIGQLTTLTELNVAENFLSHEGAESICKLTQLTVLNINFN 60

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
            +G  G  ++  L+ L +++++   I++   R ++ L  L  L+L+  +I   G   L  
Sbjct: 61  GIGDLGAAYIGELSKLTNLSIASNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLGE 120

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           L+ L  L+L    I D GA  +   +NL  L +    + + G+K I +L  LT LN+SQN
Sbjct: 121 LSQLKKLNLLANYIQDKGAKSVSQLENLTELNLTRNSIQNEGIKSIIELPLLTKLNISQN 180

Query: 431 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNH 467
             ++++  +LISG+  L  L  ++++I + G + L+ 
Sbjct: 181 -RISNEEAQLISGMKQLKELVATHTQIDNEGAKKLHE 216



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 2/203 (0%)

Query: 143 RIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
           R+H     + G L  L  LN+   N ++    + +  LT L  L I+ + + D G AY+ 
Sbjct: 13  RLHDAGAEIIGQLTTLTELNVAE-NFLSHEGAESICKLTQLTVLNINFNGIGDLGAAYIG 71

Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
            L KLT L++    +T     S+S L  L  L+LN  +++  G +   ++  LK LNL  
Sbjct: 72  ELSKLTNLSIASNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLGELSQLKKLNLLA 131

Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
           N I D+    +  L NL  LNL    I +EG+ ++  L  L  L +S  ++ +   + +S
Sbjct: 132 NYIQDKGAKSVSQLENLTELNLTRNSIQNEGIKSIIELPLLTKLNISQNRISNEEAQLIS 191

Query: 322 GLTNLESINLSFTGISDGSLRKL 344
           G+  L+ +  + T I +   +KL
Sbjct: 192 GMKQLKELVATHTQIDNEGAKKL 214



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 96/218 (44%)

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           +  L  L I  +++ D+G   +  L  LT LN+    ++    +S+  L  L  LN+N  
Sbjct: 1   MNRLTKLSIGFNRLHDAGAEIIGQLTTLTELNVAENFLSHEGAESICKLTQLTVLNINFN 60

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
            + D G     ++  L  L++  N IT+E    +  L  L  L+L+   I  +G   L  
Sbjct: 61  GIGDLGAAYIGELSKLTNLSIASNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLGE 120

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
           L  LK L L    +   G + +S L NL  +NL+   I +  ++ +  L  L  LN+   
Sbjct: 121 LSQLKKLNLLANYIQDKGAKSVSQLENLTELNLTRNSIQNEGIKSIIELPLLTKLNISQN 180

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
           +I++     ++ +  L  L     +I + GA  L   +
Sbjct: 181 RISNEEAQLISGMKQLKELVATHTQIDNEGAKKLHEME 218



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 111/229 (48%), Gaps = 6/229 (2%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
           L  L +G +  ++D   ++I  Q ++L  ++++ + ++  G   +   + L  L+ NF  
Sbjct: 4   LTKLSIG-FNRLHDAGAEIIG-QLTTLTELNVAENFLSHEGAESICKLTQLTVLNINFN- 60

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
            I D G  ++  LS LT+LS   +N IT +G ++ + L  L  LDL        G   L 
Sbjct: 61  GIGDLGAAYIGELSKLTNLSIA-SNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLG 119

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
            L +L+ LN+   N I D   K +S L NL  L ++ + + + GI  +  L  LT LN+ 
Sbjct: 120 ELSQLKKLNL-LANYIQDKGAKSVSQLENLTELNLTRNSIQNEGIKSIIELPLLTKLNIS 178

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
              ++      +S +  L  L     Q+ ++G +K  ++  L +L+L +
Sbjct: 179 QNRISNEEAQLISGMKQLKELVATHTQIDNEGAKKLHEM-ELDILDLSY 226


>gi|38154344|gb|AAR12159.1| internalin A [Listeria monocytogenes]
          Length = 685

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 42  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 96  NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 312

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 313 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 370

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 371 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 403



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 36  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 88

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 89  TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 143

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 144 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 201

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 202 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 256

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 257 LAGLTALTN 265


>gi|223698619|gb|ACN18986.1| truncated internalin A [Listeria monocytogenes]
 gi|223698691|gb|ACN19034.1| truncated internalin A [Listeria monocytogenes]
 gi|223698706|gb|ACN19044.1| truncated internalin A [Listeria monocytogenes]
 gi|223698715|gb|ACN19050.1| truncated internalin A [Listeria monocytogenes]
 gi|223698781|gb|ACN19094.1| truncated internalin A [Listeria monocytogenes]
 gi|223698784|gb|ACN19096.1| truncated internalin A [Listeria monocytogenes]
 gi|223698814|gb|ACN19116.1| truncated internalin A [Listeria monocytogenes]
 gi|223698838|gb|ACN19132.1| truncated internalin A [Listeria monocytogenes]
 gi|223698844|gb|ACN19136.1| truncated internalin A [Listeria monocytogenes]
 gi|223698850|gb|ACN19140.1| truncated internalin A [Listeria monocytogenes]
 gi|223698856|gb|ACN19144.1| truncated internalin A [Listeria monocytogenes]
 gi|223698880|gb|ACN19160.1| truncated internalin A [Listeria monocytogenes]
 gi|223698958|gb|ACN19212.1| truncated internalin A [Listeria monocytogenes]
 gi|223698967|gb|ACN19218.1| truncated internalin A [Listeria monocytogenes]
 gi|223698970|gb|ACN19220.1| truncated internalin A [Listeria monocytogenes]
 gi|223698973|gb|ACN19222.1| truncated internalin A [Listeria monocytogenes]
 gi|223698982|gb|ACN19228.1| truncated internalin A [Listeria monocytogenes]
          Length = 614

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 13  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 67  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 341

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 43/247 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 7   DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 60  TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 227

Query: 460 -AGLRHL 465
            AGL  L
Sbjct: 228 LAGLTAL 234


>gi|223698700|gb|ACN19040.1| truncated internalin A [Listeria monocytogenes]
          Length = 599

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 13  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 67  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 341

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 43/247 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 7   DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 60  TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 227

Query: 460 -AGLRHL 465
            AGL  L
Sbjct: 228 LAGLTAL 234


>gi|167861930|gb|ACA05664.1| InlA [Listeria monocytogenes]
 gi|167862036|gb|ACA05717.1| InlA [Listeria monocytogenes]
 gi|194239408|emb|CAQ76844.1| internalin A [Listeria monocytogenes]
 gi|222543296|gb|ACM66668.1| internalin A [Listeria monocytogenes]
 gi|298359976|gb|ADI77567.1| internalin A [Listeria monocytogenes]
 gi|298360582|gb|ADI77870.1| internalin A [Listeria monocytogenes]
 gi|298360712|gb|ADI77935.1| internalin A [Listeria monocytogenes]
 gi|298360716|gb|ADI77937.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--FFGNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 122/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+ +   F G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL---FFGNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|290986246|ref|XP_002675835.1| predicted protein [Naegleria gruberi]
 gi|284089434|gb|EFC43091.1| predicted protein [Naegleria gruberi]
          Length = 820

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 100/198 (50%), Gaps = 2/198 (1%)

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           L LN+C  S++      K+  L +L+  +N I DE    +  +  L SL++    IG EG
Sbjct: 606 LTLNKCP-SNELINFLKKMKQLTLLDFIYN-IGDEGAKLISEMKQLTSLDISENNIGVEG 663

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
              ++ +  L  L +   ++G  G++++S +  L S+++S+  I     + ++ +  L S
Sbjct: 664 AKYISEMKQLTSLNICRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYISEMKQLTS 723

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
           L++    I   G   ++ +  LT LD+   +I D GA Y+   K L SL I    +   G
Sbjct: 724 LDISENNIGVEGAKYISEMKQLTSLDINYNKIGDEGAKYISKMKQLTSLNIRRNEIGVEG 783

Query: 413 VKHIKDLSSLTLLNLSQN 430
           VK+I ++  LT L++S N
Sbjct: 784 VKYISEMKQLTSLDISYN 801



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 105/206 (50%), Gaps = 13/206 (6%)

Query: 197 IAYLKGLQKLTLLNL------EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
           I +LK +++LTLL+       EG  +       +S +  L  L+++   +  +G +  S+
Sbjct: 617 INFLKKMKQLTLLDFIYNIGDEGAKL-------ISEMKQLTSLDISENNIGVEGAKYISE 669

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
           +  L  LN+  NEI  E + ++  +  L SL++    IG EG   ++ +  L  L++S+ 
Sbjct: 670 MKQLTSLNICRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYISEMKQLTSLDISEN 729

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
            +G  G +++S +  L S+++++  I D   + ++ +  L SLN+   +I   G+  ++ 
Sbjct: 730 NIGVEGAKYISEMKQLTSLDINYNKIGDEGAKYISKMKQLTSLNIRRNEIGVEGVKYISE 789

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFK 396
           +  LT LD+   +I   GA YL   K
Sbjct: 790 MKQLTSLDISYNKIGVEGAKYLSEMK 815



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 106/216 (49%), Gaps = 2/216 (0%)

Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
           L L  CP +   ++ L  +  L  L+     + D+G +  S++  L  L++  N I  E 
Sbjct: 606 LTLNKCP-SNELINFLKKMKQLTLLDF-IYNIGDEGAKLISEMKQLTSLDISENNIGVEG 663

Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
             ++  +  L SLN+    IG EG+  ++ +  L  L++S  ++G  G +++S +  L S
Sbjct: 664 AKYISEMKQLTSLNICRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYISEMKQLTS 723

Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
           +++S   I     + ++ +  L SL+++  +I D G   ++ +  LT L++    I   G
Sbjct: 724 LDISENNIGVEGAKYISEMKQLTSLDINYNKIGDEGAKYISKMKQLTSLNIRRNEIGVEG 783

Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
             Y+   K L SL+I    +   G K++ ++ + T+
Sbjct: 784 VKYISEMKQLTSLDISYNKIGVEGAKYLSEMKTKTI 819



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 100/201 (49%), Gaps = 3/201 (1%)

Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
           L L +C      L+N    MK  +L + +   I D   K +S +  L SL IS + +   
Sbjct: 606 LTLNKCP--SNELINFLKKMKQLTL-LDFIYNIGDEGAKLISEMKQLTSLDISENNIGVE 662

Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
           G  Y+  +++LT LN+    +    +  +S +  L  L+++  ++  +G +  S++  L 
Sbjct: 663 GAKYISEMKQLTSLNICRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYISEMKQLT 722

Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
            L++  N I  E   ++  +  L SL+++   IGDEG   ++ +  L  L +   ++G  
Sbjct: 723 SLDISENNIGVEGAKYISEMKQLTSLDINYNKIGDEGAKYISKMKQLTSLNIRRNEIGVE 782

Query: 316 GLRHLSGLTNLESINLSFTGI 336
           G++++S +  L S+++S+  I
Sbjct: 783 GVKYISEMKQLTSLDISYNKI 803



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 89/182 (48%)

Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
           D G   +  +++LT L++    +       +S +  L  LN+ R ++  +G +  S++  
Sbjct: 637 DEGAKLISEMKQLTSLDISENNIGVEGAKYISEMKQLTSLNICRNEIGVEGVKYISEMKQ 696

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
           L  L++ +N+I  E   ++  +  L SL++    IG EG   ++ +  L  L+++  ++G
Sbjct: 697 LTSLDISYNKIGVEGAKYISEMKQLTSLDISENNIGVEGAKYISEMKQLTSLDINYNKIG 756

Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
             G +++S +  L S+N+    I    ++ ++ +  L SL++   +I   G   L+ +  
Sbjct: 757 DEGAKYISKMKQLTSLNIRRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYLSEMKT 816

Query: 374 LT 375
            T
Sbjct: 817 KT 818



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 98/223 (43%), Gaps = 28/223 (12%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
           LK    L  LDF +   I D G + +  +  LTSL    NN I  +G K  + +  L  L
Sbjct: 620 LKKMKQLTLLDFIY--NIGDEGAKLISEMKQLTSLDISENN-IGVEGAKYISEMKQLTSL 676

Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
           ++ R                         N I    +K +S +  L SL IS +K+   G
Sbjct: 677 NICR-------------------------NEIGVEGVKYISEMKQLTSLDISYNKIGVEG 711

Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
             Y+  +++LT L++    +       +S +  L  L++N  ++ D+G +  SK+  L  
Sbjct: 712 AKYISEMKQLTSLDISENNIGVEGAKYISEMKQLTSLDINYNKIGDEGAKYISKMKQLTS 771

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
           LN+  NEI  E + ++  +  L SL++    IG EG   L+ +
Sbjct: 772 LNIRRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYLSEM 814



 Score = 45.1 bits (105), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 2/85 (2%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+   L S+D+S +++   G  ++ +   L SLD N+  +I D G +++  +  LTSL+ 
Sbjct: 716 SEMKQLTSLDISENNIGVEGAKYISEMKQLTSLDINYN-KIGDEGAKYISKMKQLTSLNI 774

Query: 114 RRNNAITAQGMKAFAGLINLVKLDL 138
           RR N I  +G+K  + +  L  LD+
Sbjct: 775 RR-NEIGVEGVKYISEMKQLTSLDI 798


>gi|290973003|ref|XP_002669239.1| predicted protein [Naegleria gruberi]
 gi|284082784|gb|EFC36495.1| predicted protein [Naegleria gruberi]
          Length = 313

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 1/177 (0%)

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           +  L SL++    IG EG   ++ +  L  L +S  Q+G+ G++ +  +  L+S+N+   
Sbjct: 125 MKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYNQIGAKGVKFIIEMKQLKSLNIIGN 184

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            I    ++ ++ +  L SLN+   QI D G+  +  +  LT L++   RI   GA  +  
Sbjct: 185 QIGAEGVKLISEMKQLASLNIGGNQIGDEGVKFILEMKQLTSLNICLNRIGAEGAKLISE 244

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
            K L SL+IC   +   GVK I+++  L  LN+S N  + D+  + IS +  L SLN
Sbjct: 245 MKQLTSLDICYNRIGTEGVKFIREMKQLKSLNISGN-QIGDEEAKFISEMKQLTSLN 300



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 92/187 (49%), Gaps = 3/187 (1%)

Query: 243 DGCEKFSKIGSLKVL---NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
           D  E+   I  +K L   ++G N+I  E    +  +  L SLN+    IG +G+  +  +
Sbjct: 114 DSIEQAKFINEMKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYNQIGAKGVKFIIEM 173

Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
             LK L +   Q+G+ G++ +S +  L S+N+    I D  ++ +  +  L SLN+   +
Sbjct: 174 KQLKSLNIIGNQIGAEGVKLISEMKQLASLNIGGNQIGDEGVKFILEMKQLTSLNICLNR 233

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
           I   G   ++ +  LT LD+   RI   G  ++R  K L+SL I G  + D   K I ++
Sbjct: 234 IGAEGAKLISEMKQLTSLDICYNRIGTEGVKFIREMKQLKSLNISGNQIGDEEAKFISEM 293

Query: 420 SSLTLLN 426
             LT LN
Sbjct: 294 KQLTSLN 300



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 102/197 (51%), Gaps = 2/197 (1%)

Query: 160 LNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
           +N+K+   + DS    K ++ +  L SL I  +++   G  ++  +++LT LN+    + 
Sbjct: 104 VNVKFSRKLLDSIEQAKFINEMKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYNQIG 163

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
           A  +  +  +  L  LN+   Q+  +G +  S++  L  LN+G N+I DE +  +  +  
Sbjct: 164 AKGVKFIIEMKQLKSLNIIGNQIGAEGVKLISEMKQLASLNIGGNQIGDEGVKFILEMKQ 223

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           L SLN+    IG EG   ++ +  L  L++   ++G+ G++ +  +  L+S+N+S   I 
Sbjct: 224 LTSLNICLNRIGAEGAKLISEMKQLTSLDICYNRIGTEGVKFIREMKQLKSLNISGNQIG 283

Query: 338 DGSLRKLAGLSSLKSLN 354
           D   + ++ +  L SLN
Sbjct: 284 DEEAKFISEMKQLTSLN 300



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 94/187 (50%)

Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
           ++  +++LT L++ G  + A     +S +  L  LN++  Q+   G +   ++  LK LN
Sbjct: 121 FINEMKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYNQIGAKGVKFIIEMKQLKSLN 180

Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
           +  N+I  E +  +  +  L SLN+    IGDEG+  +  +  L  L +   ++G+ G +
Sbjct: 181 IIGNQIGAEGVKLISEMKQLASLNIGGNQIGDEGVKFILEMKQLTSLNICLNRIGAEGAK 240

Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
            +S +  L S+++ +  I    ++ +  +  LKSLN+   QI D     ++ +  LT L+
Sbjct: 241 LISEMKQLTSLDICYNRIGTEGVKFIREMKQLKSLNISGNQIGDEEAKFISEMKQLTSLN 300

Query: 379 LFGARIT 385
            +  ++ 
Sbjct: 301 TYKIKLV 307



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 1/152 (0%)

Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
           + ++ +  L S+++    I     + ++ +  L SLN+   QI   G+  +  +  L  L
Sbjct: 120 KFINEMKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYNQIGAKGVKFIIEMKQLKSL 179

Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
           ++ G +I   G   +   K L SL I G  + D GVK I ++  LT LN+  N  +  + 
Sbjct: 180 NIIGNQIGAEGVKLISEMKQLASLNIGGNQIGDEGVKFILEMKQLTSLNICLN-RIGAEG 238

Query: 438 LELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
            +LIS +  L SL++  +RI + G++ +   +
Sbjct: 239 AKLISEMKQLTSLDICYNRIGTEGVKFIREMK 270



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 380 FGARITDS--GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
           F  ++ DS   A ++   K L SL+I G  +   G K I ++  LT LN+S N  +  K 
Sbjct: 108 FSRKLLDSIEQAKFINEMKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYN-QIGAKG 166

Query: 438 LELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           ++ I  +  L SLN+  ++I + G++ ++  +
Sbjct: 167 VKFIIEMKQLKSLNIIGNQIGAEGVKLISEMK 198


>gi|167861940|gb|ACA05669.1| InlA [Listeria monocytogenes]
 gi|167861954|gb|ACA05676.1| InlA [Listeria monocytogenes]
 gi|194239400|emb|CAQ76840.1| internalin A [Listeria monocytogenes]
 gi|298360640|gb|ADI77899.1| truncated internalin A [Listeria monocytogenes]
 gi|298360688|gb|ADI77923.1| truncated internalin A [Listeria monocytogenes]
 gi|443428860|gb|AGC92229.1| truncated internalin A [Listeria monocytogenes]
 gi|443428878|gb|AGC92238.1| truncated internalin A [Listeria monocytogenes]
          Length = 684

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|371942138|gb|AEX60881.1| internaline [Listeria monocytogenes]
          Length = 789

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNAPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D +  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|112961793|gb|ABI28548.1| internalin A [Listeria monocytogenes]
          Length = 696

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 123/386 (31%), Positives = 178/386 (46%), Gaps = 60/386 (15%)

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
            S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   NN IT   
Sbjct: 1   FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQIT--D 52

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
           +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ LT L+
Sbjct: 53  IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLANLTTLE 106

Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQL 240
            L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+LN  QL
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQL 159

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
            D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  L GL 
Sbjct: 160 KDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLT 213

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------------- 343
            L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K             
Sbjct: 214 ALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 271

Query: 344 ---LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------ 394
              LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N      
Sbjct: 272 VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNT 329

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLS 420
            KN+    I    ++D G     D++
Sbjct: 330 VKNVTGALIAPATISDGGSYAEPDIT 355



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 111/230 (48%), Gaps = 40/230 (17%)

Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
           N++TD  +  LK LT L  + +++  I D  +  L  L NL  L L + Q+  + +  L 
Sbjct: 4   NQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLTGLTLFNNQI--TDIDPLK 57

Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
            LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD  L  L +LT L  LD+  
Sbjct: 58  NLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD--LKPLANLTTLERLDISS 112

Query: 382 ARITD-SGAAYLRNFK-------------------NLRSLEICGGGLTDAGVKHIKDLSS 421
            +++D S  A L N +                   NL  L + G  L D G   +  L++
Sbjct: 113 NKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTN 170

Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS----AGLRHLNH 467
           LT L+L+ N       L  +SGLT L  L +  ++I++    AGL  L +
Sbjct: 171 LTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 217


>gi|148607496|gb|ABQ95524.1| InlA [Listeria monocytogenes]
          Length = 730

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|167862030|gb|ACA05714.1| InlA [Listeria monocytogenes]
          Length = 576

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KPL
Sbjct: 152 NHIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 124/251 (49%), Gaps = 26/251 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D +  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLT+L+   LSF G   
Sbjct: 146 GLTLFNNHITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQV 197

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308

Query: 459 S----AGLRHL 465
           +    AGL  L
Sbjct: 309 NISPLAGLTAL 319



 Score = 38.5 bits (88), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 60/139 (43%), Gaps = 41/139 (29%)

Query: 316 GLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSL 371
           G++ + G   L NL  IN S   ++D  +  L  L+ L  + ++  QI D T LA LT+L
Sbjct: 87  GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNL 144

Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
           TGLT   LF   ITD     L+N  NL  LE+    ++D                     
Sbjct: 145 TGLT---LFNNHITDIDP--LKNLTNLNRLELSSNTISD--------------------- 178

Query: 432 NLTDKTLELISGLTGLVSL 450
                    IS L+GL SL
Sbjct: 179 ---------ISALSGLTSL 188


>gi|371942074|gb|AEX60849.1| internaline [Listeria monocytogenes]
 gi|371942102|gb|AEX60863.1| internaline [Listeria monocytogenes]
 gi|371942114|gb|AEX60869.1| internaline [Listeria monocytogenes]
 gi|371942124|gb|AEX60874.1| internaline [Listeria monocytogenes]
          Length = 790

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D +  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|223698901|gb|ACN19174.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 15  LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 68

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 69  IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 120

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 121 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 173

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 174 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 227

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 228 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 285

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 286 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 343

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 344 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 374



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 7   DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 60  TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 227

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 228 LAGLTALTN 236


>gi|371942136|gb|AEX60880.1| internaline [Listeria monocytogenes]
          Length = 789

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|56797877|emb|CAH04900.1| internalin A [Listeria monocytogenes]
          Length = 792

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 123/391 (31%), Positives = 180/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L   SNLT L+   NN 
Sbjct: 92  LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANSSNLTGLTLF-NNQ 145

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 146 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 197

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 198 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 250

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 251 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 304

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 305 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 362

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 363 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNV 420

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 421 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 451



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 165/385 (42%), Gaps = 95/385 (24%)

Query: 91  CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
            I  S+G       ++  T +S    +   A+ MK   G  N+     + DL++ T +  
Sbjct: 16  WINTSNGTNAQAATITQDTPISQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 75

Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
             + +K +  LE LN                   NL  +  S +++TD  I  LK L KL
Sbjct: 76  DRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD--ITPLKDLTKL 114

Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
                         +D L          +N  Q++D      +   +L  L L  N+ITD
Sbjct: 115 --------------VDIL----------MNNNQIAD--ITPLANSSNLTGLTLFNNQITD 148

Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
             +  LK LTNL  L L S  I D  +  L+GL +L+ L   + QV  + L+ L+ LT L
Sbjct: 149 --IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPLANLTTL 201

Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
           E +++S   +SD S+  LA L++L+SL     QI+D     +T L  LT+LD        
Sbjct: 202 ERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-------- 246

Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
                         L + G  L D G   +  L++LT L+L+ N       L  +SGLT 
Sbjct: 247 -------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTK 288

Query: 447 LVSLNVSNSRITS----AGLRHLNH 467
           L  L +  ++I++    AGL  L +
Sbjct: 289 LTELKLGANQISNISPLAGLTALTN 313


>gi|223698868|gb|ACN19152.1| internalin A [Listeria monocytogenes]
 gi|223698898|gb|ACN19172.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 15  LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 68

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 69  IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 120

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 121 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 173

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 174 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 227

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 228 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 285

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 286 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 343

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 344 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 374



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 7   DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 60  TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 227

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 228 LAGLTALTN 236


>gi|371942142|gb|AEX60883.1| internaline [Listeria monocytogenes]
          Length = 790

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D +  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLTNL+   LSF G   
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 309 NISPLAGLTALTN 321


>gi|298359722|gb|ADI77440.1| truncated internalin A [Listeria monocytogenes]
 gi|298359752|gb|ADI77455.1| truncated internalin A [Listeria monocytogenes]
 gi|298359762|gb|ADI77460.1| truncated internalin A [Listeria monocytogenes]
 gi|298359812|gb|ADI77485.1| truncated internalin A [Listeria monocytogenes]
 gi|298359814|gb|ADI77486.1| truncated internalin A [Listeria monocytogenes]
 gi|298359858|gb|ADI77508.1| truncated internalin A [Listeria monocytogenes]
 gi|298359886|gb|ADI77522.1| truncated internalin A [Listeria monocytogenes]
 gi|298359900|gb|ADI77529.1| truncated internalin A [Listeria monocytogenes]
 gi|298359906|gb|ADI77532.1| truncated internalin A [Listeria monocytogenes]
 gi|298359912|gb|ADI77535.1| truncated internalin A [Listeria monocytogenes]
 gi|298359944|gb|ADI77551.1| truncated internalin A [Listeria monocytogenes]
 gi|298359980|gb|ADI77569.1| truncated internalin A [Listeria monocytogenes]
 gi|298359990|gb|ADI77574.1| truncated internalin A [Listeria monocytogenes]
 gi|298359992|gb|ADI77575.1| truncated internalin A [Listeria monocytogenes]
 gi|298359994|gb|ADI77576.1| truncated internalin A [Listeria monocytogenes]
 gi|298360008|gb|ADI77583.1| truncated internalin A [Listeria monocytogenes]
 gi|298360026|gb|ADI77592.1| truncated internalin A [Listeria monocytogenes]
 gi|298360060|gb|ADI77609.1| truncated internalin A [Listeria monocytogenes]
 gi|298360078|gb|ADI77618.1| truncated internalin A [Listeria monocytogenes]
 gi|298360082|gb|ADI77620.1| truncated internalin A [Listeria monocytogenes]
 gi|298360096|gb|ADI77627.1| truncated internalin A [Listeria monocytogenes]
 gi|298360142|gb|ADI77650.1| truncated internalin A [Listeria monocytogenes]
 gi|298360144|gb|ADI77651.1| truncated internalin A [Listeria monocytogenes]
 gi|298360146|gb|ADI77652.1| truncated internalin A [Listeria monocytogenes]
 gi|298360160|gb|ADI77659.1| truncated internalin A [Listeria monocytogenes]
 gi|298360192|gb|ADI77675.1| truncated internalin A [Listeria monocytogenes]
 gi|298360252|gb|ADI77705.1| truncated internalin A [Listeria monocytogenes]
 gi|298360274|gb|ADI77716.1| truncated internalin A [Listeria monocytogenes]
 gi|298360276|gb|ADI77717.1| truncated internalin A [Listeria monocytogenes]
 gi|298360296|gb|ADI77727.1| truncated internalin A [Listeria monocytogenes]
 gi|298360304|gb|ADI77731.1| truncated internalin A [Listeria monocytogenes]
 gi|298360316|gb|ADI77737.1| truncated internalin A [Listeria monocytogenes]
 gi|298360320|gb|ADI77739.1| truncated internalin A [Listeria monocytogenes]
 gi|298360336|gb|ADI77747.1| truncated internalin A [Listeria monocytogenes]
 gi|298360342|gb|ADI77750.1| truncated internalin A [Listeria monocytogenes]
 gi|298360348|gb|ADI77753.1| truncated internalin A [Listeria monocytogenes]
 gi|298360374|gb|ADI77766.1| truncated internalin A [Listeria monocytogenes]
 gi|298360380|gb|ADI77769.1| truncated internalin A [Listeria monocytogenes]
 gi|298360404|gb|ADI77781.1| truncated internalin A [Listeria monocytogenes]
 gi|298360414|gb|ADI77786.1| truncated internalin A [Listeria monocytogenes]
 gi|298360426|gb|ADI77792.1| truncated internalin A [Listeria monocytogenes]
 gi|298360458|gb|ADI77808.1| truncated internalin A [Listeria monocytogenes]
 gi|298360464|gb|ADI77811.1| truncated internalin A [Listeria monocytogenes]
 gi|298360488|gb|ADI77823.1| truncated internalin A [Listeria monocytogenes]
 gi|298360492|gb|ADI77825.1| truncated internalin A [Listeria monocytogenes]
 gi|298360518|gb|ADI77838.1| truncated internalin A [Listeria monocytogenes]
 gi|298360538|gb|ADI77848.1| truncated internalin A [Listeria monocytogenes]
 gi|298360562|gb|ADI77860.1| truncated internalin A [Listeria monocytogenes]
 gi|298360594|gb|ADI77876.1| truncated internalin A [Listeria monocytogenes]
 gi|298360616|gb|ADI77887.1| truncated internalin A [Listeria monocytogenes]
 gi|298360654|gb|ADI77906.1| truncated internalin A [Listeria monocytogenes]
 gi|298360660|gb|ADI77909.1| truncated internalin A [Listeria monocytogenes]
 gi|298360668|gb|ADI77913.1| truncated internalin A [Listeria monocytogenes]
 gi|298360690|gb|ADI77924.1| truncated internalin A [Listeria monocytogenes]
 gi|298360696|gb|ADI77927.1| truncated internalin A [Listeria monocytogenes]
 gi|298360720|gb|ADI77939.1| truncated internalin A [Listeria monocytogenes]
 gi|443428784|gb|AGC92191.1| truncated internalin A [Listeria monocytogenes]
 gi|443428786|gb|AGC92192.1| truncated internalin A [Listeria monocytogenes]
 gi|443428790|gb|AGC92194.1| truncated internalin A [Listeria monocytogenes]
 gi|443428794|gb|AGC92196.1| truncated internalin A [Listeria monocytogenes]
 gi|443428808|gb|AGC92203.1| truncated internalin A [Listeria monocytogenes]
 gi|443428810|gb|AGC92204.1| truncated internalin A [Listeria monocytogenes]
 gi|443428828|gb|AGC92213.1| truncated internalin A [Listeria monocytogenes]
 gi|443428866|gb|AGC92232.1| truncated internalin A [Listeria monocytogenes]
 gi|443428874|gb|AGC92236.1| truncated internalin A [Listeria monocytogenes]
 gi|443428876|gb|AGC92237.1| truncated internalin A [Listeria monocytogenes]
          Length = 699

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|22347556|gb|AAM95923.1| internalin A precursor [Listeria monocytogenes]
          Length = 744

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 44  LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 97

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 98  IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 149

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 150 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 202

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 203 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 256

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 257 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 314

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 315 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 372

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 373 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 403



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 36  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 88

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 89  TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 143

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 144 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 201

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 202 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 256

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 257 LAGLTALTN 265


>gi|223698835|gb|ACN19130.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 15  LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 68

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 69  IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 120

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 121 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 173

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 174 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 227

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 228 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 285

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 286 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 343

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 344 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 374



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 118/247 (47%), Gaps = 43/247 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 7   DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 60  TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 227

Query: 460 -AGLRHL 465
            AGL  L
Sbjct: 228 LAGLTAL 234


>gi|167862032|gb|ACA05715.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|158298684|ref|XP_318863.4| AGAP009775-PA [Anopheles gambiae str. PEST]
 gi|157014003|gb|EAA14468.4| AGAP009775-PA [Anopheles gambiae str. PEST]
          Length = 547

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 150/337 (44%), Gaps = 46/337 (13%)

Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH----GGLVNLKGLMKLES 159
           GL  L ++   RNN IT   M+ F G  NL++LDL R  R+     G   +LK L  L  
Sbjct: 110 GLVRLKTIDLSRNN-ITQLAMENFRGQDNLIELDLSR-NRLDNIASGTFAHLKELKTLHL 167

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
           ++    N IT+ + +    L  LK L +S + + D      K +Q L +L + GC ++  
Sbjct: 168 ID----NSITEFNQRLFLHLAKLKHLDLSYNSIDDLPPEVFKDVQDLKILRVRGCRLSNI 223

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE---ITDECLVHLKGLT 276
                + L  L  L+L + Q+     E+F  +  L+ L L  N+   I DE  +H KGLT
Sbjct: 224 NPQIYNILSHLTELDLGQNQIKFLDKEEFKDLRHLQTLRLDGNQLSVIIDELFIHQKGLT 283

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
            L+        I D    N   L NL  L+ S  ++          L NL+++N+S    
Sbjct: 284 LLDISRNRLAKIADRAFEN---LANLTFLDASYNKLSHIEPVCFRPLRNLQTLNIS---- 336

Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR--- 393
                          ++ LD  ++ DT +  + ++TGL         + D G   L    
Sbjct: 337 --------------GNIQLDLGEMEDT-INVIKNITGLM--------VADMGTLPLNLFS 373

Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
            F++L +L + G  + +  ++ I+ L+ L  L+LS+N
Sbjct: 374 PFRHLSALNLSGNHIDNFTLQIIEPLNQLEFLDLSRN 410



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 115/274 (41%), Gaps = 4/274 (1%)

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
              L+ L+I  + V   G     GL +L  ++L    +T   +++     +L  L+L+R 
Sbjct: 87  FKKLEILRIIDANVPSVGDRSFWGLVRLKTIDLSRNNITQLAMENFRGQDNLIELDLSRN 146

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
           +L +     F+ +  LK L+L  N IT+        L  L+ L+L    I D        
Sbjct: 147 RLDNIASGTFAHLKELKTLHLIDNSITEFNQRLFLHLAKLKHLDLSYNSIDDLPPEVFKD 206

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
           + +LK L +   ++ +   +  + L++L  ++L    I      +   L  L++L LD  
Sbjct: 207 VQDLKILRVRGCRLSNINPQIYNILSHLTELDLGQNQIKFLDKEEFKDLRHLQTLRLDGN 266

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
           Q++           GLT LD+   R+         N  NL  L+     L+       + 
Sbjct: 267 QLSVIIDELFIHQKGLTLLDISRNRLAKIADRAFENLANLTFLDASYNKLSHIEPVCFRP 326

Query: 419 LSSLTLLNLSQNCNL----TDKTLELISGLTGLV 448
           L +L  LN+S N  L     + T+ +I  +TGL+
Sbjct: 327 LRNLQTLNISGNIQLDLGEMEDTINVIKNITGLM 360



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 3/160 (1%)

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
           + K L  L  ++ +   +GD       GL  LK ++LS   +    + +  G  NL  ++
Sbjct: 86  YFKKLEILRIIDANVPSVGDRSF---WGLVRLKTIDLSRNNITQLAMENFRGQDNLIELD 142

Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
           LS   + + +    A L  LK+L+L    IT+        L  L HLDL    I D    
Sbjct: 143 LSRNRLDNIASGTFAHLKELKTLHLIDNSITEFNQRLFLHLAKLKHLDLSYNSIDDLPPE 202

Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
             ++ ++L+ L + G  L++   +    LS LT L+L QN
Sbjct: 203 VFKDVQDLKILRVRGCRLSNINPQIYNILSHLTELDLGQN 242



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 91/218 (41%), Gaps = 4/218 (1%)

Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
           + F K+  L++++     + D       GL  L++++L    I    + N  G  NL  L
Sbjct: 85  QYFKKLEILRIIDANVPSVGDRSFW---GLVRLKTIDLSRNNITQLAMENFRGQDNLIEL 141

Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
           +LS  ++ +      + L  L++++L    I++ + R    L+ LK L+L    I D   
Sbjct: 142 DLSRNRLDNIASGTFAHLKELKTLHLIDNSITEFNQRLFLHLAKLKHLDLSYNSIDDLPP 201

Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
                +  L  L + G R+++          +L  L++    +     +  KDL  L  L
Sbjct: 202 EVFKDVQDLKILRVRGCRLSNINPQIYNILSHLTELDLGQNQIKFLDKEEFKDLRHLQTL 261

Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
            L  N  L+    EL     GL  L++S +R+     R
Sbjct: 262 RLDGN-QLSVIIDELFIHQKGLTLLDISRNRLAKIADR 298


>gi|298360550|gb|ADI77854.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|404412528|ref|YP_006698115.1| internalin A [Listeria monocytogenes SLCC7179]
 gi|298360000|gb|ADI77579.1| internalin A [Listeria monocytogenes]
 gi|298360676|gb|ADI77917.1| internalin A [Listeria monocytogenes]
 gi|404238227|emb|CBY59628.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC7179]
 gi|443428842|gb|AGC92220.1| internalin A [Listeria monocytogenes]
 gi|443428848|gb|AGC92223.1| internalin A [Listeria monocytogenes]
 gi|443428858|gb|AGC92228.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|390362171|ref|XP_003730087.1| PREDICTED: F-box/LRR-repeat protein 14-like [Strongylocentrotus
           purpuratus]
          Length = 478

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 97/299 (32%), Positives = 152/299 (50%), Gaps = 24/299 (8%)

Query: 81  SNLQSLDFNFCIQISDGGLEHL--RGLSNLTSLSFRRNNAITAQGM-KAFAGLINLVKLD 137
            N+QSL+ + C  ++D GL H   + +  LT L+      IT   + +    L  L  LD
Sbjct: 174 PNIQSLNLSGCYNLTDVGLSHAFSKEIPTLTVLNLSLCKQITDTSLWRIEQYLKQLEVLD 233

Query: 138 LERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT-----NLKSLQI--- 187
           L  C+ I   G LV  +GL KL+ LN++ C  I+D  +  L+G++       + L++   
Sbjct: 234 LAGCSNITNTGLLVIARGLHKLKGLNLRSCRHISDVGIGYLAGVSVEAARGTRDLELLVL 293

Query: 188 -SCSKVTDSGIAYL-KGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
             C K++D+ +  + KGL KL  LNL   C +T   + SLS + SL  LNL  C  +SD 
Sbjct: 294 QDCQKLSDTALMSIAKGLHKLRSLNLSFCCGITDTGMISLSRMQSLRELNLRSCDNISDI 353

Query: 244 GCEKFSKI-GSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-GL 299
           G    ++  G    L+  F ++I D  L H+ +G+ NL++++L SC I DEG+  L   L
Sbjct: 354 GLAHLAEYGGHFATLDASFCDKIGDAALSHISQGMPNLKNVSLSSCHITDEGVGRLVRSL 413

Query: 300 CNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 355
            N+  L +    +V   GL  ++  L  L+ I+L   T I+   L ++  L  L  LNL
Sbjct: 414 HNMTTLNIGQCVRVTDKGLALIAEHLKELKCIDLYGCTMITTVGLERIMQLPCLTVLNL 472



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 94/294 (31%), Positives = 145/294 (49%), Gaps = 54/294 (18%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           + G+ N++SL +S C  +TD G+  A+ K +  LT+LNL  C                  
Sbjct: 170 MQGMPNIQSLNLSGCYNLTDVGLSHAFSKEIPTLTVLNLSLCK----------------- 212

Query: 233 LNLNRCQLSDDGCEKFSK-IGSLKVLNL-GFNEITDE-CLVHLKGLTNLESLNLDSC-GI 288
                 Q++D    +  + +  L+VL+L G + IT+   LV  +GL  L+ LNL SC  I
Sbjct: 213 ------QITDTSLWRIEQYLKQLEVLDLAGCSNITNTGLLVIARGLHKLKGLNLRSCRHI 266

Query: 289 GDEGLVNLTG--------------LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
            D G+  L G              L    C +LSDT + S       GL  L S+NLSF 
Sbjct: 267 SDVGIGYLAGVSVEAARGTRDLELLVLQDCQKLSDTALMSIA----KGLHKLRSLNLSFC 322

Query: 335 -GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTG-LTHLDL-FGARITDSGAA 390
            GI+D  +  L+ + SL+ LNL +   I+D GLA L    G    LD  F  +I D+  +
Sbjct: 323 CGITDTGMISLSRMQSLRELNLRSCDNISDIGLAHLAEYGGHFATLDASFCDKIGDAALS 382

Query: 391 YL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
           ++ +   NL+++ +    +TD GV + ++ L ++T LN+ Q   +TDK L LI+
Sbjct: 383 HISQGMPNLKNVSLSSCHITDEGVGRLVRSLHNMTTLNIGQCVRVTDKGLALIA 436



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 158/303 (52%), Gaps = 26/303 (8%)

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQIS-CSKVTDSGIAYLKG-LQKL 206
           ++G+  ++SLN+  C  +TD  +       +  L  L +S C ++TD+ +  ++  L++L
Sbjct: 170 MQGMPNIQSLNLSGCYNLTDVGLSHAFSKEIPTLTVLNLSLCKQITDTSLWRIEQYLKQL 229

Query: 207 TLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDG--------CEKFSKIGSLK 255
            +L+L GC        L     L  L  LNL  C+ +SD G         E       L+
Sbjct: 230 EVLDLAGCSNITNTGLLVIARGLHKLKGLNLRSCRHISDVGIGYLAGVSVEAARGTRDLE 289

Query: 256 VLNLG-FNEITDECLVHL-KGLTNLESLNLD-SCGIGDEGLVNLTGLCNLKCLEL-SDTQ 311
           +L L    +++D  L+ + KGL  L SLNL   CGI D G+++L+ + +L+ L L S   
Sbjct: 290 LLVLQDCQKLSDTALMSIAKGLHKLRSLNLSFCCGITDTGMISLSRMQSLRELNLRSCDN 349

Query: 312 VGSSGLRHLSGL-TNLESINLSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAAL 368
           +   GL HL+    +  +++ SF   I D +L  ++ G+ +LK+++L +  ITD G+  L
Sbjct: 350 ISDIGLAHLAEYGGHFATLDASFCDKIGDAALSHISQGMPNLKNVSLSSCHITDEGVGRL 409

Query: 369 T-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICGGGL-TDAGVKHIKDLSSLTL 424
             SL  +T L++    R+TD G A +  + K L+ +++ G  + T  G++ I  L  LT+
Sbjct: 410 VRSLHNMTTLNIGQCVRVTDKGLALIAEHLKELKCIDLYGCTMITTVGLERIMQLPCLTV 469

Query: 425 LNL 427
           LNL
Sbjct: 470 LNL 472



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 139/281 (49%), Gaps = 51/281 (18%)

Query: 62  VDLSG-SDVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
           +DL+G S++T++GL+ + +    L+ L+   C  ISD G+ +L G+S             
Sbjct: 232 LDLAGCSNITNTGLLVIARGLHKLKGLNLRSCRHISDVGIGYLAGVS------------- 278

Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESLNIKWCNCITDSDMKPLS 177
               ++A  G  +L  L L+ C ++    L+++ KGL KL SLN+ +C  ITD+ M  LS
Sbjct: 279 ----VEAARGTRDLELLVLQDCQKLSDTALMSIAKGLHKLRSLNLSFCCGITDTGMISLS 334

Query: 178 GLTNLKSLQI-SCSKVTDSGIAYLKGL-QKLTLLNLEGC-PVTAACLDSLS-ALGSLFYL 233
            + +L+ L + SC  ++D G+A+L         L+   C  +  A L  +S  + +L  +
Sbjct: 335 RMQSLRELNLRSCDNISDIGLAHLAEYGGHFATLDASFCDKIGDAALSHISQGMPNLKNV 394

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEG 292
           +L+ C ++D+G      +G L                 ++ L N+ +LN+  C  + D+G
Sbjct: 395 SLSSCHITDEG------VGRL-----------------VRSLHNMTTLNIGQCVRVTDKG 431

Query: 293 LVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 331
           L  +   L  LKC++L   T + + GL  +  L  L  +NL
Sbjct: 432 LALIAEHLKELKCIDLYGCTMITTVGLERIMQLPCLTVLNL 472



 Score = 38.1 bits (87), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 99/208 (47%), Gaps = 33/208 (15%)

Query: 272 LKGLTNLESLNLDSC-GIGDEGLVN--------LTGLCNLKCLELSDTQVGSSGLRHLSG 322
           ++G+ N++SLNL  C  + D GL +        LT L    C +++DT +     R    
Sbjct: 170 MQGMPNIQSLNLSGCYNLTDVGLSHAFSKEIPTLTVLNLSLCKQITDTSL----WRIEQY 225

Query: 323 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL 379
           L  LE ++L+  + I++  L  +A GL  LK LNL + R I+D G+  L           
Sbjct: 226 LKQLEVLDLAGCSNITNTGLLVIARGLHKLKGLNLRSCRHISDVGIGYL----------- 274

Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTL 438
             A ++   A   R+ + L  L+ C   L+D  +  I K L  L  LNLS  C +TD  +
Sbjct: 275 --AGVSVEAARGTRDLE-LLVLQDCQK-LSDTALMSIAKGLHKLRSLNLSFCCGITDTGM 330

Query: 439 ELISGLTGLVSLNV-SNSRITSAGLRHL 465
             +S +  L  LN+ S   I+  GL HL
Sbjct: 331 ISLSRMQSLRELNLRSCDNISDIGLAHL 358


>gi|371942096|gb|AEX60860.1| internaline [Listeria monocytogenes]
          Length = 790

 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|194326157|emb|CAQ77237.1| internalin A [Listeria monocytogenes]
 gi|290350820|dbj|BAI78331.1| internalin A [Listeria monocytogenes]
 gi|290350836|dbj|BAI78339.1| internalin A [Listeria monocytogenes]
 gi|298360124|gb|ADI77641.1| internalin A [Listeria monocytogenes]
 gi|298360394|gb|ADI77776.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|298359882|gb|ADI77520.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|130774819|gb|ABO32422.1| InlA [Listeria monocytogenes]
 gi|167861894|gb|ACA05646.1| InlA [Listeria monocytogenes]
 gi|167861946|gb|ACA05672.1| InlA [Listeria monocytogenes]
 gi|167861948|gb|ACA05673.1| InlA [Listeria monocytogenes]
 gi|194239402|emb|CAQ76841.1| internalin A [Listeria monocytogenes]
 gi|298360052|gb|ADI77605.1| internalin A [Listeria monocytogenes]
 gi|298360164|gb|ADI77661.1| internalin A [Listeria monocytogenes]
 gi|298360372|gb|ADI77765.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|297171917|gb|ADI22904.1| hypothetical protein [uncultured Rhizobium sp. HF0500_35F13]
          Length = 412

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 2/165 (1%)

Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
           A + G + +T+       +T   L+ L  LG++ YL+L+   + DDG    +K+  L+VL
Sbjct: 41  AQVSGTRSVTV-RFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVL 99

Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
            L   EITD     L  L++L  L      +GD     L     L  L+++  QV  SGL
Sbjct: 100 VLSGTEITDTGFSQLSNLSDLNQLTASEL-MGDGTTAALASATKLNFLDMTGGQVTDSGL 158

Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
            HLSG+ NL+ + LS T I+D  L  L  ++ L+ L L+  +ITD
Sbjct: 159 SHLSGMKNLKRLTLSRTAITDKGLEHLQSITVLRDLQLNNTKITD 203



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 79/155 (50%), Gaps = 2/155 (1%)

Query: 159 SLNIKWCN-CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
           S+ +++ N  +T  D++PL  L  +  L +S + V D G+ ++  L+ L +L L G  +T
Sbjct: 48  SVTVRFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTEIT 107

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
                 LS L  L  L  +   + D      +    L  L++   ++TD  L HL G+ N
Sbjct: 108 DTGFSQLSNLSDLNQLTASEL-MGDGTTAALASATKLNFLDMTGGQVTDSGLSHLSGMKN 166

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
           L+ L L    I D+GL +L  +  L+ L+L++T++
Sbjct: 167 LKRLTLSRTAITDKGLEHLQSITVLRDLQLNNTKI 201



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 77/140 (55%), Gaps = 8/140 (5%)

Query: 299 LCNLKCLELSDTQVGSSGL---RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           L  +  L+LSDT VG  G+     L G   L+ + LS T I+D    +L+ LS L  L  
Sbjct: 69  LGTVHYLDLSDTSVGDDGMVHINKLEG---LQVLVLSGTEITDTGFSQLSNLSDLNQLTA 125

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
            +  + D   AAL S T L  LD+ G ++TDSG ++L   KNL+ L +    +TD G++H
Sbjct: 126 -SELMGDGTTAALASATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRTAITDKGLEH 184

Query: 416 IKDLSSLTLLNLSQNCNLTD 435
           ++ ++ L  L L+ N  +TD
Sbjct: 185 LQSITVLRDLQLN-NTKITD 203



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 79/147 (53%), Gaps = 1/147 (0%)

Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
           +T + L  L  L  +  L+L    +GD+G+V++  L  L+ L LS T++  +G   LS L
Sbjct: 58  LTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTEITDTGFSQLSNL 117

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
           ++L  +  S   + DG+   LA  + L  L++   Q+TD+GL+ L+ +  L  L L    
Sbjct: 118 SDLNQLTASEL-MGDGTTAALASATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRTA 176

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTD 410
           ITD G  +L++   LR L++    +TD
Sbjct: 177 ITDKGLEHLQSITVLRDLQLNNTKITD 203



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 26/156 (16%)

Query: 328 SINLSFT--GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           S+ + FT   ++   L  L  L ++  L+L    + D G+  +  L GL  L L G  IT
Sbjct: 48  SVTVRFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTEIT 107

Query: 386 DSGAAYLRNFKNLRS-----------------------LEICGGGLTDAGVKHIKDLSSL 422
           D+G + L N  +L                         L++ GG +TD+G+ H+  + +L
Sbjct: 108 DTGFSQLSNLSDLNQLTASELMGDGTTAALASATKLNFLDMTGGQVTDSGLSHLSGMKNL 167

Query: 423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L LS+   +TDK LE +  +T L  L ++N++IT
Sbjct: 168 KRLTLSRTA-ITDKGLEHLQSITVLRDLQLNNTKIT 202



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 8/135 (5%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR--NNAI 119
           +DLS + V D G++H+     LQ L  +   +I+D G   L  LS+L  L+      +  
Sbjct: 75  LDLSDTSVGDDGMVHINKLEGLQVLVLS-GTEITDTGFSQLSNLSDLNQLTASELMGDGT 133

Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
           TA    A A    L  LD+        GL +L G+  L+ L +     ITD  ++ L  +
Sbjct: 134 TA----ALASATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRT-AITDKGLEHLQSI 188

Query: 180 TNLKSLQISCSKVTD 194
           T L+ LQ++ +K+TD
Sbjct: 189 TVLRDLQLNNTKITD 203


>gi|313485070|gb|ADR53006.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|51850106|dbj|BAD42394.1| leucine-rich repeat protein [Ralstonia solanacearum]
          Length = 462

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 129/298 (43%), Gaps = 24/298 (8%)

Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
            +T +GIA L  L  L  L++ GC + A     L++  +L  LN++R  + DDG    + 
Sbjct: 155 PITSAGIARLLAL-PLERLDVSGCGLDAESARLLASHPTLTVLNISRNAIGDDGAAALAA 213

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
              L  LN+G N I+D     L     L  L++    IGD G   L G   L  L+  D 
Sbjct: 214 NPKLTSLNVGRNGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDC 273

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
            +G  G R L+    L  ++L +  I  G    LA    L SLN+    +   G A L +
Sbjct: 274 GIGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNVCGNALGSAGAALLAA 333

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
              LT LD+    I ++GA  L     L  L +   G+ +AG + +   ++LT L++  N
Sbjct: 334 SAALTELDIGNNGIGNAGARALGANATLVKLNVANNGIEEAGARALAASTTLTALDIGSN 393

Query: 431 -----------CNLTDKTLELISGLTG------------LVSLNVSNSRITSAGLRHL 465
                       N T  TL+  +   G            L +LNV  +RI  AG+R L
Sbjct: 394 RIGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAGMRAL 451



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 142/323 (43%), Gaps = 12/323 (3%)

Query: 70  TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN----AITAQGMK 125
           TD+ L  L   ++L +LD + C    +G +    G++ L +L   R +     + A+  +
Sbjct: 133 TDAYLQRLP--ASLTALDLSRC----EGPITSA-GIARLLALPLERLDVSGCGLDAESAR 185

Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
             A    L  L++ R      G   L    KL SLN+   N I+D+  + L     L  L
Sbjct: 186 LLASHPTLTVLNISRNAIGDDGAAALAANPKLTSLNVG-RNGISDAGARALVACAGLTKL 244

Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
            IS +++ D+G   L G  KL  L+   C +      +L+A  +L  L+L   ++   G 
Sbjct: 245 DISDNRIGDAGARALAGSAKLNKLDAGDCGIGPEGARALAASQTLTRLDLRYNEIGVGGA 304

Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
           E  +    L  LN+  N +       L     L  L++ + GIG+ G   L     L  L
Sbjct: 305 EALAANPRLTSLNVCGNALGSAGAALLAASAALTELDIGNNGIGNAGARALGANATLVKL 364

Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
            +++  +  +G R L+  T L ++++    I D   + LA   +L +L+  A  I D G 
Sbjct: 365 NVANNGIEEAGARALAASTTLTALDIGSNRIGDAGAQALAANDTLVTLDASANWIGDPGA 424

Query: 366 AALTSLTGLTHLDLFGARITDSG 388
            AL   T L  L++   RI ++G
Sbjct: 425 LALADNTRLATLNVGANRIGEAG 447



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 98/251 (39%), Gaps = 29/251 (11%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           + L  +D+S + + D+G   L   + L  LD   C                         
Sbjct: 239 AGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDC------------------------- 273

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC-NCITDSDMKP 175
             I  +G +A A    L +LDL       GG   L    +L SLN+  C N +  +    
Sbjct: 274 -GIGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNV--CGNALGSAGAAL 330

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           L+    L  L I  + + ++G   L     L  LN+    +  A   +L+A  +L  L++
Sbjct: 331 LAASAALTELDIGNNGIGNAGARALGANATLVKLNVANNGIEEAGARALAASTTLTALDI 390

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
              ++ D G +  +   +L  L+   N I D   + L   T L +LN+ +  IG+ G+  
Sbjct: 391 GSNRIGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAGMRA 450

Query: 296 LTGLCNLKCLE 306
           L     L  L+
Sbjct: 451 LEASTTLAVLK 461


>gi|371942126|gb|AEX60875.1| internaline [Listeria monocytogenes]
          Length = 790

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|313485072|gb|ADR53007.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|255025517|ref|ZP_05297503.1| internalin A [Listeria monocytogenes FSL J2-003]
          Length = 744

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|371942110|gb|AEX60867.1| internaline [Listeria monocytogenes]
 gi|371942112|gb|AEX60868.1| internaline [Listeria monocytogenes]
          Length = 789

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|29823175|emb|CAD15502.2| probable lrr-gala family type III effector protein (gala 4)
           [Ralstonia solanacearum GMI1000]
          Length = 462

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 129/298 (43%), Gaps = 24/298 (8%)

Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
            +T +GIA L  L  L  L++ GC + A     L++  +L  LN++R  + DDG    + 
Sbjct: 155 PITSAGIARLLAL-PLERLDVSGCGLDAESARLLASHPTLTVLNISRNAIGDDGAAALAA 213

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
              L  LN+G N I+D     L     L  L++    IGD G   L G   L  L+  D 
Sbjct: 214 NPKLTSLNVGRNGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDC 273

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
            +G  G R L+    L  ++L +  I  G    LA    L SLN+    +   G A L +
Sbjct: 274 GIGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNVCGNALGSAGAALLAA 333

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
              LT LD+    I ++GA  L     L  L +   G+ +AG + +   ++LT L++  N
Sbjct: 334 SAALTELDIGNNGIGNAGARALGANATLVKLSVANNGIEEAGARALAASTTLTALDIGSN 393

Query: 431 -----------CNLTDKTLELISGLTG------------LVSLNVSNSRITSAGLRHL 465
                       N T  TL+  +   G            L +LNV  +RI  AG+R L
Sbjct: 394 RIGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAGMRAL 451



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 1/233 (0%)

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
           KL SLN+   N I+D+  + L     L  L IS +++ D+G   L G  KL  L+   C 
Sbjct: 216 KLTSLNVG-RNGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDCG 274

Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
           +      +L+A  +L  L+L   ++   G E  +    L  LN+  N +       L   
Sbjct: 275 IGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNVCGNALGSAGAALLAAS 334

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
             L  L++ + GIG+ G   L     L  L +++  +  +G R L+  T L ++++    
Sbjct: 335 AALTELDIGNNGIGNAGARALGANATLVKLSVANNGIEEAGARALAASTTLTALDIGSNR 394

Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
           I D   + LA   +L +L+  A  I D G  AL   T L  L++   RI ++G
Sbjct: 395 IGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAG 447



 Score = 38.5 bits (88), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 98/251 (39%), Gaps = 29/251 (11%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           + L  +D+S + + D+G   L   + L  LD   C                         
Sbjct: 239 AGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDC------------------------- 273

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC-NCITDSDMKP 175
             I  +G +A A    L +LDL       GG   L    +L SLN+  C N +  +    
Sbjct: 274 -GIGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNV--CGNALGSAGAAL 330

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           L+    L  L I  + + ++G   L     L  L++    +  A   +L+A  +L  L++
Sbjct: 331 LAASAALTELDIGNNGIGNAGARALGANATLVKLSVANNGIEEAGARALAASTTLTALDI 390

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
              ++ D G +  +   +L  L+   N I D   + L   T L +LN+ +  IG+ G+  
Sbjct: 391 GSNRIGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAGMRA 450

Query: 296 LTGLCNLKCLE 306
           L     L  L+
Sbjct: 451 LEASTTLAVLK 461


>gi|371942132|gb|AEX60878.1| internaline [Listeria monocytogenes]
          Length = 790

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGDNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D +  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|298359950|gb|ADI77554.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|294358395|gb|ADE73850.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|223698658|gb|ACN19012.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 15  LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 68

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 69  IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 120

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 121 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 173

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 174 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 227

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 228 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 285

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 286 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 343

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 344 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 374



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 7   DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 60  TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 227

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 228 LAGLTALTN 236


>gi|148607488|gb|ABQ95520.1| InlA [Listeria monocytogenes]
          Length = 797

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|371942084|gb|AEX60854.1| internaline [Listeria monocytogenes]
          Length = 790

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D +  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 310 ISPLAGLTALTN 321


>gi|223698643|gb|ACN19002.1| internalin A [Listeria monocytogenes]
 gi|223698646|gb|ACN19004.1| internalin A [Listeria monocytogenes]
 gi|223698670|gb|ACN19020.1| internalin A [Listeria monocytogenes]
 gi|223698673|gb|ACN19022.1| internalin A [Listeria monocytogenes]
 gi|223698718|gb|ACN19052.1| internalin A [Listeria monocytogenes]
 gi|223698754|gb|ACN19076.1| internalin A [Listeria monocytogenes]
 gi|223698757|gb|ACN19078.1| internalin A [Listeria monocytogenes]
 gi|223698796|gb|ACN19104.1| internalin A [Listeria monocytogenes]
 gi|223698826|gb|ACN19124.1| internalin A [Listeria monocytogenes]
 gi|223698829|gb|ACN19126.1| internalin A [Listeria monocytogenes]
 gi|223698832|gb|ACN19128.1| internalin A [Listeria monocytogenes]
 gi|223698862|gb|ACN19148.1| internalin A [Listeria monocytogenes]
 gi|223698895|gb|ACN19170.1| internalin A [Listeria monocytogenes]
 gi|223698925|gb|ACN19190.1| internalin A [Listeria monocytogenes]
 gi|223698928|gb|ACN19192.1| internalin A [Listeria monocytogenes]
 gi|223698931|gb|ACN19194.1| internalin A [Listeria monocytogenes]
 gi|223698934|gb|ACN19196.1| internalin A [Listeria monocytogenes]
 gi|223698937|gb|ACN19198.1| internalin A [Listeria monocytogenes]
 gi|223698940|gb|ACN19200.1| internalin A [Listeria monocytogenes]
 gi|223698943|gb|ACN19202.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 15  LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 68

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 69  IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 120

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 121 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 173

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 174 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 227

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 228 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 285

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 286 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 343

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 344 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 7   DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 60  TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 227

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 228 LAGLTALTN 236


>gi|294358397|gb|ADE73851.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 181/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQIRD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D+ 
Sbjct: 427 NVSIPNTVKNVTGALIAPDTISDGGSYAEPDIP 459



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLTNL+   LSF G   
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 309 NISPLAGLTALTN 321


>gi|22347572|gb|AAM95931.1| internalin A precursor [Listeria monocytogenes]
          Length = 741

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 119/376 (31%), Positives = 173/376 (46%), Gaps = 58/376 (15%)

Query: 74  LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
           +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN IT   +     L NL
Sbjct: 57  ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNL 110

Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
            +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ LT L+ L IS +KV+
Sbjct: 111 NRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLERLDISSNKVS 164

Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSK 250
           D  +     L KLT  NLE    T   +  ++ LG   +L  L+LN  QL D G    + 
Sbjct: 165 DISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LAS 215

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
           + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  L GL  L  LEL++ 
Sbjct: 216 LTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNEN 271

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK----------------LAGLSSL 350
           Q+    +  +S L NL  + L F  ISD     SL K                LA L+++
Sbjct: 272 QL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI 329

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEIC 404
             L+    QI+D  L  L +LT +T L L     T+    Y  N       KN+    I 
Sbjct: 330 NWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKTNVSIPNTVKNVTGALIA 387

Query: 405 GGGLTDAGVKHIKDLS 420
              ++D G     D++
Sbjct: 388 PATISDGGSYAEPDIT 403



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 121/249 (48%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD----EGLVNLTG 298
           DG E    + +L  +N GFN++TD  +  LK LT L  + +++  I D      L NLTG
Sbjct: 36  DGLEY---LNNLTQINFGFNQLTD--ITPLKDLTKLVDIVMNNNQITDISPLANLTNLTG 90

Query: 299 LC----------------NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
           L                 NL  LELS   +  S +  LSGLTNL+   LSF G     L+
Sbjct: 91  LTLFNNQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVTDLK 145

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
            LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL  L 
Sbjct: 146 PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELS 201

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 202 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 256

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 257 LAGLTALTN 265


>gi|17546519|ref|NP_519921.1| GALA protein [Ralstonia solanacearum GMI1000]
          Length = 401

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 129/298 (43%), Gaps = 24/298 (8%)

Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
            +T +GIA L  L  L  L++ GC + A     L++  +L  LN++R  + DDG    + 
Sbjct: 94  PITSAGIARLLAL-PLERLDVSGCGLDAESARLLASHPTLTVLNISRNAIGDDGAAALAA 152

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
              L  LN+G N I+D     L     L  L++    IGD G   L G   L  L+  D 
Sbjct: 153 NPKLTSLNVGRNGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDC 212

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
            +G  G R L+    L  ++L +  I  G    LA    L SLN+    +   G A L +
Sbjct: 213 GIGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNVCGNALGSAGAALLAA 272

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
              LT LD+    I ++GA  L     L  L +   G+ +AG + +   ++LT L++  N
Sbjct: 273 SAALTELDIGNNGIGNAGARALGANATLVKLSVANNGIEEAGARALAASTTLTALDIGSN 332

Query: 431 -----------CNLTDKTLELISGLTG------------LVSLNVSNSRITSAGLRHL 465
                       N T  TL+  +   G            L +LNV  +RI  AG+R L
Sbjct: 333 RIGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAGMRAL 390



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 142/323 (43%), Gaps = 12/323 (3%)

Query: 70  TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN----AITAQGMK 125
           TD+ L  L   ++L +LD + C    +G +    G++ L +L   R +     + A+  +
Sbjct: 72  TDAYLQRLP--ASLTALDLSRC----EGPITSA-GIARLLALPLERLDVSGCGLDAESAR 124

Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
             A    L  L++ R      G   L    KL SLN+   N I+D+  + L     L  L
Sbjct: 125 LLASHPTLTVLNISRNAIGDDGAAALAANPKLTSLNVGR-NGISDAGARALVACAGLTKL 183

Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
            IS +++ D+G   L G  KL  L+   C +      +L+A  +L  L+L   ++   G 
Sbjct: 184 DISDNRIGDAGARALAGSAKLNKLDAGDCGIGPEGARALAASQTLTRLDLRYNEIGVGGA 243

Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
           E  +    L  LN+  N +       L     L  L++ + GIG+ G   L     L  L
Sbjct: 244 EALAANPRLTSLNVCGNALGSAGAALLAASAALTELDIGNNGIGNAGARALGANATLVKL 303

Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
            +++  +  +G R L+  T L ++++    I D   + LA   +L +L+  A  I D G 
Sbjct: 304 SVANNGIEEAGARALAASTTLTALDIGSNRIGDAGAQALAANDTLVTLDASANWIGDPGA 363

Query: 366 AALTSLTGLTHLDLFGARITDSG 388
            AL   T L  L++   RI ++G
Sbjct: 364 LALADNTRLATLNVGANRIGEAG 386


>gi|371942100|gb|AEX60862.1| internaline [Listeria monocytogenes]
          Length = 789

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|38154342|gb|AAR12158.1| internalin A [Listeria monocytogenes]
          Length = 728

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 44  LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 97

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 98  IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 149

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 150 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 202

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 203 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 256

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 257 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 314

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 315 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 372

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 373 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 403



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 36  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 88

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 89  TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 143

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 144 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 201

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 202 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 256

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 257 LAGLTALTN 265


>gi|443428838|gb|AGC92218.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|371942086|gb|AEX60855.1| truncated internaline [Listeria monocytogenes]
 gi|371942128|gb|AEX60876.1| truncated internaline [Listeria monocytogenes]
          Length = 491

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSDGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|223698655|gb|ACN19010.1| internalin A [Listeria monocytogenes]
 gi|223698913|gb|ACN19182.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 15  LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 68

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 69  IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 120

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 121 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 173

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 174 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 227

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 228 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 285

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 286 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 343

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 344 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 118/247 (47%), Gaps = 43/247 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 7   DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 60  TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 227

Query: 460 -AGLRHL 465
            AGL  L
Sbjct: 228 LAGLTAL 234


>gi|386052707|ref|YP_005970265.1| internalin A [Listeria monocytogenes Finland 1998]
 gi|130774801|gb|ABO32414.1| InlA [Listeria monocytogenes]
 gi|130774805|gb|ABO32415.1| InlA [Listeria monocytogenes]
 gi|130774807|gb|ABO32416.1| InlA [Listeria monocytogenes]
 gi|150371724|dbj|BAF65677.1| internalin A [Listeria monocytogenes]
 gi|150371780|dbj|BAF65679.1| internalin A [Listeria monocytogenes]
 gi|150371784|dbj|BAF65681.1| internalin A [Listeria monocytogenes]
 gi|150371788|dbj|BAF65683.1| internalin A [Listeria monocytogenes]
 gi|150371790|dbj|BAF65684.1| internalin A [Listeria monocytogenes]
 gi|150371792|dbj|BAF65685.1| internalin A [Listeria monocytogenes]
 gi|150371798|dbj|BAF65688.1| internalin A [Listeria monocytogenes]
 gi|150371802|dbj|BAF65690.1| internalin A [Listeria monocytogenes]
 gi|150371808|dbj|BAF65693.1| internalin A [Listeria monocytogenes]
 gi|150371814|dbj|BAF65696.1| internalin A [Listeria monocytogenes]
 gi|150371818|dbj|BAF65698.1| internalin A [Listeria monocytogenes]
 gi|150371824|dbj|BAF65701.1| internalin A [Listeria monocytogenes]
 gi|150371830|dbj|BAF65704.1| internalin A [Listeria monocytogenes]
 gi|150371832|dbj|BAF65705.1| internalin A [Listeria monocytogenes]
 gi|150371834|dbj|BAF65706.1| internalin A [Listeria monocytogenes]
 gi|150371836|dbj|BAF65707.1| internalin A [Listeria monocytogenes]
 gi|150371838|dbj|BAF65708.1| internalin A [Listeria monocytogenes]
 gi|150371844|dbj|BAF65711.1| internalin A [Listeria monocytogenes]
 gi|150371848|dbj|BAF65713.1| internalin A [Listeria monocytogenes]
 gi|150371850|dbj|BAF65714.1| internalin A [Listeria monocytogenes]
 gi|150371854|dbj|BAF65716.1| internalin A [Listeria monocytogenes]
 gi|150371864|dbj|BAF65721.1| internalin A [Listeria monocytogenes]
 gi|150371870|dbj|BAF65724.1| internalin A [Listeria monocytogenes]
 gi|290350828|dbj|BAI78335.1| internalin A [Listeria monocytogenes]
 gi|290350832|dbj|BAI78337.1| internalin A [Listeria monocytogenes]
 gi|290350834|dbj|BAI78338.1| internalin A [Listeria monocytogenes]
 gi|290350840|dbj|BAI78341.1| internalin A [Listeria monocytogenes]
 gi|298359802|gb|ADI77480.1| internalin A [Listeria monocytogenes]
 gi|298359828|gb|ADI77493.1| internalin A [Listeria monocytogenes]
 gi|298359876|gb|ADI77517.1| internalin A [Listeria monocytogenes]
 gi|298359878|gb|ADI77518.1| internalin A [Listeria monocytogenes]
 gi|298359918|gb|ADI77538.1| internalin A [Listeria monocytogenes]
 gi|298359964|gb|ADI77561.1| internalin A [Listeria monocytogenes]
 gi|298359966|gb|ADI77562.1| internalin A [Listeria monocytogenes]
 gi|298360014|gb|ADI77586.1| internalin A [Listeria monocytogenes]
 gi|298360038|gb|ADI77598.1| internalin A [Listeria monocytogenes]
 gi|298360084|gb|ADI77621.1| internalin A [Listeria monocytogenes]
 gi|298360104|gb|ADI77631.1| internalin A [Listeria monocytogenes]
 gi|298360134|gb|ADI77646.1| internalin A [Listeria monocytogenes]
 gi|298360170|gb|ADI77664.1| internalin A [Listeria monocytogenes]
 gi|298360178|gb|ADI77668.1| internalin A [Listeria monocytogenes]
 gi|298360214|gb|ADI77686.1| internalin A [Listeria monocytogenes]
 gi|298360242|gb|ADI77700.1| internalin A [Listeria monocytogenes]
 gi|298360244|gb|ADI77701.1| internalin A [Listeria monocytogenes]
 gi|298360254|gb|ADI77706.1| internalin A [Listeria monocytogenes]
 gi|298360278|gb|ADI77718.1| internalin A [Listeria monocytogenes]
 gi|298360310|gb|ADI77734.1| internalin A [Listeria monocytogenes]
 gi|298360334|gb|ADI77746.1| internalin A [Listeria monocytogenes]
 gi|298360338|gb|ADI77748.1| internalin A [Listeria monocytogenes]
 gi|298360376|gb|ADI77767.1| internalin A [Listeria monocytogenes]
 gi|298360384|gb|ADI77771.1| internalin A [Listeria monocytogenes]
 gi|298360436|gb|ADI77797.1| internalin A [Listeria monocytogenes]
 gi|298360532|gb|ADI77845.1| internalin A [Listeria monocytogenes]
 gi|298360542|gb|ADI77850.1| internalin A [Listeria monocytogenes]
 gi|298360552|gb|ADI77855.1| internalin A [Listeria monocytogenes]
 gi|298360564|gb|ADI77861.1| internalin A [Listeria monocytogenes]
 gi|298360568|gb|ADI77863.1| internalin A [Listeria monocytogenes]
 gi|298360596|gb|ADI77877.1| internalin A [Listeria monocytogenes]
 gi|298360666|gb|ADI77912.1| internalin A [Listeria monocytogenes]
 gi|298360710|gb|ADI77934.1| internalin A [Listeria monocytogenes]
 gi|346645358|gb|AEO37983.1| internalin A [Listeria monocytogenes Finland 1998]
 gi|443428778|gb|AGC92188.1| internalin A [Listeria monocytogenes]
 gi|443428804|gb|AGC92201.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|223698976|gb|ACN19224.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 15  LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 68

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 69  IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 120

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 121 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 173

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 174 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 227

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 228 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 285

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 286 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 343

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 344 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 118/247 (47%), Gaps = 43/247 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 7   DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 60  TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 227

Query: 460 -AGLRHL 465
            AGL  L
Sbjct: 228 LAGLTAL 234


>gi|371942104|gb|AEX60864.1| internaline [Listeria monocytogenes]
          Length = 790

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|290971703|ref|XP_002668623.1| predicted protein [Naegleria gruberi]
 gi|284082100|gb|EFC35879.1| predicted protein [Naegleria gruberi]
          Length = 295

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 1/156 (0%)

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           +  L SLN+   GIGDE    ++ +  L  L++S  Q+G  G ++LS +  L S+++S  
Sbjct: 131 MKQLISLNISGNGIGDEEAKFISEMKQLTSLDISANQIGDEGAKYLSEMKQLTSLDISAN 190

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            I D   + L+ +  L SLN+   +I D G   ++ +  LT LD+   ++   G  ++  
Sbjct: 191 LIGDEGAKYLSEMKQLISLNIGKNEI-DEGAKYISEMKQLTSLDISYTQVDVEGVKFISE 249

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
            + L SL ICG  +   GVK I ++  L  L++S N
Sbjct: 250 MRQLTSLNICGNRIGIEGVKFISEVKQLKSLDISYN 285



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 81/152 (53%), Gaps = 2/152 (1%)

Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
           + +S +  L S+N+S  GI D   + ++ +  L SL++ A QI D G   L+ +  LT L
Sbjct: 126 KFISEMKQLISLNISGNGIGDEEAKFISEMKQLTSLDISANQIGDEGAKYLSEMKQLTSL 185

Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
           D+    I D GA YL   K L SL I G    D G K+I ++  LT L++S    +  + 
Sbjct: 186 DISANLIGDEGAKYLSEMKQLISLNI-GKNEIDEGAKYISEMKQLTSLDISY-TQVDVEG 243

Query: 438 LELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           ++ IS +  L SLN+  +RI   G++ ++  +
Sbjct: 244 VKFISEMRQLTSLNICGNRIGIEGVKFISEVK 275



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 87/168 (51%), Gaps = 1/168 (0%)

Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
           S++  L  LN+  N I DE    +  +  L SL++ +  IGDEG   L+ +  L  L++S
Sbjct: 129 SEMKQLISLNISGNGIGDEEAKFISEMKQLTSLDISANQIGDEGAKYLSEMKQLTSLDIS 188

Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
              +G  G ++LS +  L S+N+    I +G+ + ++ +  L SL++   Q+   G+  +
Sbjct: 189 ANLIGDEGAKYLSEMKQLISLNIGKNEIDEGA-KYISEMKQLTSLDISYTQVDVEGVKFI 247

Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
           + +  LT L++ G RI   G  ++   K L+SL+I    +   G K I
Sbjct: 248 SEMRQLTSLNICGNRIGIEGVKFISEVKQLKSLDISYNRIGVEGAKFI 295



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 88/169 (52%), Gaps = 1/169 (0%)

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           +S +  L  LN++   + D+  +  S++  L  L++  N+I DE   +L  +  L SL++
Sbjct: 128 ISEMKQLISLNISGNGIGDEEAKFISEMKQLTSLDISANQIGDEGAKYLSEMKQLTSLDI 187

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
            +  IGDEG   L+ +  L  L +   ++   G +++S +  L S+++S+T +    ++ 
Sbjct: 188 SANLIGDEGAKYLSEMKQLISLNIGKNEI-DEGAKYISEMKQLTSLDISYTQVDVEGVKF 246

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
           ++ +  L SLN+   +I   G+  ++ +  L  LD+   RI   GA ++
Sbjct: 247 ISEMRQLTSLNICGNRIGIEGVKFISEVKQLKSLDISYNRIGVEGAKFI 295



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 94/179 (52%), Gaps = 3/179 (1%)

Query: 160 LNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
           +N+ + + + DS  + K +S +  L SL IS + + D    ++  +++LT L++    + 
Sbjct: 110 VNVTYSDWLLDSFEEAKFISEMKQLISLNISGNGIGDEEAKFISEMKQLTSLDISANQIG 169

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
                 LS +  L  L+++   + D+G +  S++  L  LN+G NEI DE   ++  +  
Sbjct: 170 DEGAKYLSEMKQLTSLDISANLIGDEGAKYLSEMKQLISLNIGKNEI-DEGAKYISEMKQ 228

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
           L SL++    +  EG+  ++ +  L  L +   ++G  G++ +S +  L+S+++S+  I
Sbjct: 229 LTSLDISYTQVDVEGVKFISEMRQLTSLNICGNRIGIEGVKFISEVKQLKSLDISYNRI 287



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 7/159 (4%)

Query: 43  GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
           G+ D+    I S+   L S+D+S + + D G  +L +   L SLD +  + I D G ++L
Sbjct: 143 GIGDEEAKFI-SEMKQLTSLDISANQIGDEGAKYLSEMKQLTSLDISANL-IGDEGAKYL 200

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
             +  L SL+  +N     +G K  + +  L  LD+        G+  +  + +L SLNI
Sbjct: 201 SEMKQLISLNIGKNE--IDEGAKYISEMKQLTSLDISYTQVDVEGVKFISEMRQLTSLNI 258

Query: 163 KWC-NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
             C N I    +K +S +  LKSL IS +++   G  ++
Sbjct: 259 --CGNRIGIEGVKFISEVKQLKSLDISYNRIGVEGAKFI 295



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 80/158 (50%), Gaps = 4/158 (2%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+   L+S+++SG+ + D     + +   L SLD +   QI D G ++L  +  LTSL  
Sbjct: 129 SEMKQLISLNISGNGIGDEEAKFISEMKQLTSLDIS-ANQIGDEGAKYLSEMKQLTSLDI 187

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
              N I  +G K  + +  L+ L++ +   I  G   +  + +L SL+I +     +  +
Sbjct: 188 SA-NLIGDEGAKYLSEMKQLISLNIGK-NEIDEGAKYISEMKQLTSLDISYTQVDVEG-V 244

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
           K +S +  L SL I  +++   G+ ++  +++L  L++
Sbjct: 245 KFISEMRQLTSLNICGNRIGIEGVKFISEVKQLKSLDI 282


>gi|223698682|gb|ACN19028.1| internalin A [Listeria monocytogenes]
          Length = 712

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 15  LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 68

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 69  IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 120

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 121 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 173

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 174 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 227

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 228 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 285

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 286 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 343

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 344 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 43/247 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 7   DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 60  TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 227

Query: 460 -AGLRHL 465
            AGL  L
Sbjct: 228 LAGLTAL 234


>gi|167861888|gb|ACA05643.1| InlA [Listeria monocytogenes]
 gi|194326163|emb|CAQ77240.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|130774795|gb|ABO32412.1| InlA [Listeria monocytogenes]
 gi|150371796|dbj|BAF65687.1| internalin A [Listeria monocytogenes]
 gi|150371806|dbj|BAF65692.1| internalin A [Listeria monocytogenes]
 gi|150371822|dbj|BAF65700.1| internalin A [Listeria monocytogenes]
 gi|194326149|emb|CAQ77233.1| internalin A [Listeria monocytogenes]
 gi|298359930|gb|ADI77544.1| internalin A [Listeria monocytogenes]
 gi|298360322|gb|ADI77740.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|371942116|gb|AEX60870.1| internaline [Listeria monocytogenes]
          Length = 789

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|340052077|emb|CBY84390.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|223698664|gb|ACN19016.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 15  LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 68

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 69  IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 120

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 121 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 173

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 174 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 227

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 228 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 285

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 286 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 343

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 344 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 7   DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 60  TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 227

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 228 LAGLTALTN 236


>gi|223698607|gb|ACN18978.1| internalin A [Listeria monocytogenes]
 gi|223698703|gb|ACN19042.1| internalin A [Listeria monocytogenes]
 gi|223698760|gb|ACN19080.1| internalin A [Listeria monocytogenes]
 gi|223698907|gb|ACN19178.1| internalin A [Listeria monocytogenes]
 gi|223698910|gb|ACN19180.1| internalin A [Listeria monocytogenes]
 gi|223698916|gb|ACN19184.1| internalin A [Listeria monocytogenes]
 gi|223698919|gb|ACN19186.1| internalin A [Listeria monocytogenes]
 gi|223698964|gb|ACN19216.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 15  LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 68

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 69  IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 120

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 121 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 173

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 174 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 227

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 228 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 285

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 286 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 343

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 344 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 7   DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 60  TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 227

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 228 LAGLTALTN 236


>gi|335427390|ref|ZP_08554321.1| Rab family protein [Haloplasma contractile SSD-17B]
 gi|334895063|gb|EGM33243.1| Rab family protein [Haloplasma contractile SSD-17B]
          Length = 1451

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 96/310 (30%), Positives = 159/310 (51%), Gaps = 25/310 (8%)

Query: 150  NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTL 208
            +L  L  +++L   W      +D+  L+ L+NL SL +S ++V+D + +  L  LQ + L
Sbjct: 1097 DLSSLQNIKTLKNLWLENNNITDLSVLANLSNLDSLYLSNNQVSDLTPLINLANLQNVYL 1156

Query: 209  LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
             N +         ++ S + +L  L+L+  Q++D      S   +L  L+L  N+ITD  
Sbjct: 1157 SNNQ----VTTLPENFSNMLNLNGLHLSGNQITD--VTPLSTAPALIELDLSNNQITD-- 1208

Query: 269  LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
            L +   LT L SLNL+   I D  L  L  L  L  L L++ Q+  S L  L GLTNL  
Sbjct: 1209 LTNYDLLTYLFSLNLNDNSISD--LTPLANLTKLSSLRLNNNQI--SDLTPLGGLTNLTH 1264

Query: 329  INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
            +      ISD  L  L  L+ +  L L+  QI+D  L AL+SLT L++L +   +ITD  
Sbjct: 1265 LYAENNAISD--LTPLTNLNKIWYLVLNGNQISD--LTALSSLTDLSYLRMNNNQITD-- 1318

Query: 389  AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
               L   +NLR  ++       + + ++ + +S++ L L+ N  ++D  + +IS  TGL 
Sbjct: 1319 ---LSPLQNLRLSDLQLNNNLISDLSYLANSTSISKLLLNNN-QISD--ISVISNFTGLR 1372

Query: 449  SLNVSNSRIT 458
            +L + ++ I+
Sbjct: 1373 TLELDDNMIS 1382


>gi|290350826|dbj|BAI78334.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|47096455|ref|ZP_00234048.1| internalin A precursor [Listeria monocytogenes str. 1/2a F6854]
 gi|254913677|ref|ZP_05263689.1| internalin A [Listeria monocytogenes J2818]
 gi|254937992|ref|ZP_05269689.1| internalin A [Listeria monocytogenes F6900]
 gi|386046091|ref|YP_005964423.1| internalin A [Listeria monocytogenes J0161]
 gi|47015176|gb|EAL06116.1| internalin A precursor [Listeria monocytogenes str. 1/2a F6854]
 gi|194239410|emb|CAQ76845.1| internalin A [Listeria monocytogenes]
 gi|223006792|gb|ACM69353.1| internalin A [Listeria monocytogenes]
 gi|223006794|gb|ACM69354.1| internalin A [Listeria monocytogenes]
 gi|258610604|gb|EEW23212.1| internalin A [Listeria monocytogenes F6900]
 gi|293591690|gb|EFG00025.1| internalin A [Listeria monocytogenes J2818]
 gi|298359952|gb|ADI77555.1| internalin A [Listeria monocytogenes]
 gi|298359956|gb|ADI77557.1| internalin A [Listeria monocytogenes]
 gi|298359986|gb|ADI77572.1| internalin A [Listeria monocytogenes]
 gi|298360086|gb|ADI77622.1| internalin A [Listeria monocytogenes]
 gi|298360130|gb|ADI77644.1| internalin A [Listeria monocytogenes]
 gi|298360206|gb|ADI77682.1| internalin A [Listeria monocytogenes]
 gi|298360572|gb|ADI77865.1| internalin A [Listeria monocytogenes]
 gi|298360644|gb|ADI77901.1| internalin A [Listeria monocytogenes]
 gi|345533082|gb|AEO02523.1| internalin A [Listeria monocytogenes J0161]
 gi|443428774|gb|AGC92186.1| internalin A [Listeria monocytogenes]
 gi|443428776|gb|AGC92187.1| internalin A [Listeria monocytogenes]
 gi|443428868|gb|AGC92233.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|16802477|ref|NP_463962.1| internalin A [Listeria monocytogenes EGD-e]
 gi|386049359|ref|YP_005967350.1| internalin-A [Listeria monocytogenes FSL R2-561]
 gi|404282867|ref|YP_006683764.1| internalin A [Listeria monocytogenes SLCC2372]
 gi|403399437|sp|P0DJM0.1|INLA_LISMO RecName: Full=Internalin-A; Flags: Precursor
 gi|12054782|emb|CAC20628.1| internalin A [Listeria monocytogenes]
 gi|16409810|emb|CAC98512.1| Internalin A [Listeria monocytogenes EGD-e]
 gi|130774817|gb|ABO32421.1| InlA [Listeria monocytogenes]
 gi|130774821|gb|ABO32423.1| InlA [Listeria monocytogenes]
 gi|130774823|gb|ABO32424.1| InlA [Listeria monocytogenes]
 gi|150371782|dbj|BAF65680.1| internalin A [Listeria monocytogenes]
 gi|150371794|dbj|BAF65686.1| internalin A [Listeria monocytogenes]
 gi|150371804|dbj|BAF65691.1| internalin A [Listeria monocytogenes]
 gi|150371820|dbj|BAF65699.1| internalin A [Listeria monocytogenes]
 gi|150371846|dbj|BAF65712.1| internalin A [Listeria monocytogenes]
 gi|150371852|dbj|BAF65715.1| internalin A [Listeria monocytogenes]
 gi|150371856|dbj|BAF65717.1| internalin A [Listeria monocytogenes]
 gi|150371860|dbj|BAF65719.1| internalin A [Listeria monocytogenes]
 gi|150371868|dbj|BAF65723.1| internalin A [Listeria monocytogenes]
 gi|167861980|gb|ACA05689.1| InlA [Listeria monocytogenes]
 gi|194239382|emb|CAQ76831.1| internalin A [Listeria monocytogenes]
 gi|298359818|gb|ADI77488.1| internalin A [Listeria monocytogenes]
 gi|298359832|gb|ADI77495.1| internalin A [Listeria monocytogenes]
 gi|298360054|gb|ADI77606.1| internalin A [Listeria monocytogenes]
 gi|298360128|gb|ADI77643.1| internalin A [Listeria monocytogenes]
 gi|298360212|gb|ADI77685.1| internalin A [Listeria monocytogenes]
 gi|298360216|gb|ADI77687.1| internalin A [Listeria monocytogenes]
 gi|298360256|gb|ADI77707.1| internalin A [Listeria monocytogenes]
 gi|298360522|gb|ADI77840.1| internalin A [Listeria monocytogenes]
 gi|346423205|gb|AEO24730.1| internalin-A [Listeria monocytogenes FSL R2-561]
 gi|404232369|emb|CBY53772.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2372]
          Length = 800

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|298360230|gb|ADI77694.1| internalin A [Listeria monocytogenes]
 gi|298360588|gb|ADI77873.1| internalin A [Listeria monocytogenes]
 gi|298360606|gb|ADI77882.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|298360234|gb|ADI77696.1| internalin A [Listeria monocytogenes]
 gi|298360500|gb|ADI77829.1| internalin A [Listeria monocytogenes]
 gi|298360708|gb|ADI77933.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 183/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  + +
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISS 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNDISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISS 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|290981770|ref|XP_002673604.1| hypothetical protein NAEGRDRAFT_58930 [Naegleria gruberi]
 gi|284087189|gb|EFC40860.1| hypothetical protein NAEGRDRAFT_58930 [Naegleria gruberi]
          Length = 494

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 114/231 (49%), Gaps = 3/231 (1%)

Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
           L +LT LN+    V       +  +  L YL+++   +SD+G +  S++  L  LN+   
Sbjct: 224 LHQLTCLNISSNNVGFNTFKPIGNVKQLTYLDVSWNYISDEGAKVLSQLSQLTHLNVNCT 283

Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
            I  E   ++  LT L +L         EG    + +  L  L++S   +G++G+++LS 
Sbjct: 284 IIGIEGAKYISKLTKLRTLIAARNNFWIEGCQYFSEMEQLTALDVSHNSIGNTGIKYLSK 343

Query: 323 LTNLESINLSFTGISDGSLRK---LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
           +  L  +N++   I+     +   +  LS L  L++ +  I   G+ A+++++ L  L++
Sbjct: 344 MKQLTELNINDNAINQFGTEESKLIRELSQLTKLSISSNNIGIEGVTAISTMSQLRTLNI 403

Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           F  RI  +GA  +   +NL  L+IC   +   G K I  +  LT L++++N
Sbjct: 404 FFNRIGLAGAKLISGMQNLTVLDICNNDIGTNGAKEISKMKQLTKLDIARN 454



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 154/361 (42%), Gaps = 54/361 (14%)

Query: 37  CLGQYPGVNDKWMD-----VIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
           CL Q+  +N + +       I  +   L  +D+  S +   G   + +  +L SLD N  
Sbjct: 147 CLEQFESMNVRGISRLQFYKIFEKTKQLTKLDIGKSIIWLEGFKSITELKHLNSLDMNNM 206

Query: 92  IQISDGG----LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
           + +        LE +  L  LT L+   NN     G   F  + N+ +L           
Sbjct: 207 VFMEKESKLELLESISQLHQLTCLNISSNNV----GFNTFKPIGNVKQLTY--------- 253

Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
                       L++ W N I+D   K LS L+ L  L ++C+ +   G  Y+  L KL 
Sbjct: 254 ------------LDVSW-NYISDEGAKVLSQLSQLTHLNVNCTIIGIEGAKYISKLTKLR 300

Query: 208 LL-------NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
            L        +EGC          S +  L  L+++   + + G +  SK+  L  LN+ 
Sbjct: 301 TLIAARNNFWIEGCQY-------FSEMEQLTALDVSHNSIGNTGIKYLSKMKQLTELNIN 353

Query: 261 FNEI----TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
            N I    T+E  + ++ L+ L  L++ S  IG EG+  ++ +  L+ L +   ++G +G
Sbjct: 354 DNAINQFGTEESKL-IRELSQLTKLSISSNNIGIEGVTAISTMSQLRTLNIFFNRIGLAG 412

Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
            + +SG+ NL  +++    I     ++++ +  L  L++    I + G  AL S+  L  
Sbjct: 413 AKLISGMQNLTVLDICNNDIGTNGAKEISKMKQLTKLDIARNMIGNEGAKALKSMKQLKS 472

Query: 377 L 377
           L
Sbjct: 473 L 473



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 130/309 (42%), Gaps = 27/309 (8%)

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGG-----LVNLKGLMKLESLNIKWCNCITDSDM 173
           I  +G K+   L +L  LD+     +        L ++  L +L  LNI   N +  +  
Sbjct: 184 IWLEGFKSITELKHLNSLDMNNMVFMEKESKLELLESISQLHQLTCLNIS-SNNVGFNTF 242

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           KP+  +  L  L +S + ++D G   L  L +LT LN+    +       +S L  L  L
Sbjct: 243 KPIGNVKQLTYLDVSWNYISDEGAKVLSQLSQLTHLNVNCTIIGIEGAKYISKLTKLRTL 302

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
              R     +GC+ FS++  L  L++  N I +  + +L  +  L  LN++   I     
Sbjct: 303 IAARNNFWIEGCQYFSEMEQLTALDVSHNSIGNTGIKYLSKMKQLTELNINDNAIN---- 358

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
                            Q G+   + +  L+ L  +++S   I    +  ++ +S L++L
Sbjct: 359 -----------------QFGTEESKLIRELSQLTKLSISSNNIGIEGVTAISTMSQLRTL 401

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
           N+   +I   G   ++ +  LT LD+    I  +GA  +   K L  L+I    + + G 
Sbjct: 402 NIFFNRIGLAGAKLISGMQNLTVLDICNNDIGTNGAKEISKMKQLTKLDIARNMIGNEGA 461

Query: 414 KHIKDLSSL 422
           K +K +  L
Sbjct: 462 KALKSMKQL 470



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 104/222 (46%), Gaps = 7/222 (3%)

Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-----EGLVNLTGLCNL 302
           F K   L  L++G + I  E    +  L +L SL++++    +     E L +++ L  L
Sbjct: 168 FEKTKQLTKLDIGKSIIWLEGFKSITELKHLNSLDMNNMVFMEKESKLELLESISQLHQL 227

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
            CL +S   VG +  + +  +  L  +++S+  ISD   + L+ LS L  LN++   I  
Sbjct: 228 TCLNISSNNVGFNTFKPIGNVKQLTYLDVSWNYISDEGAKVLSQLSQLTHLNVNCTIIGI 287

Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
            G   ++ LT L  L          G  Y    + L +L++    + + G+K++  +  L
Sbjct: 288 EGAKYISKLTKLRTLIAARNNFWIEGCQYFSEMEQLTALDVSHNSIGNTGIKYLSKMKQL 347

Query: 423 TLLNLSQNC--NLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
           T LN++ N       +  +LI  L+ L  L++S++ I   G+
Sbjct: 348 TELNINDNAINQFGTEESKLIRELSQLTKLSISSNNIGIEGV 389


>gi|354478681|ref|XP_003501543.1| PREDICTED: insulin-like growth factor-binding protein complex acid
           labile subunit [Cricetulus griseus]
          Length = 603

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 114/415 (27%), Positives = 172/415 (41%), Gaps = 49/415 (11%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLR-----GLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
            NL SLDF   + +    L  L      GL NL  L   RN  + +     F    NL  
Sbjct: 95  QNLSSLDF---LNLQGSWLNSLEPQALLGLQNLYHLHLERN-LLRSLAAGLFTHTPNLAS 150

Query: 136 LDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
           L L      R+  GL   +GL  L  LN+ W + +   DM    GL NL+ L ++ +K  
Sbjct: 151 LSLGNNLLGRLEDGL--FQGLGHLWDLNLGWNSLVVLPDMV-FQGLGNLRELVLAGNK-- 205

Query: 194 DSGIAYLKG-----------------------------LQKLTLLNLEGCPVTAACLDSL 224
              +AYL+                              L +L  L L+   VTA    + 
Sbjct: 206 ---LAYLQPSLFCGLGELRELDLSRNALRSVKANVFIHLPRLQKLYLDRNFVTAVAPGAF 262

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
             + +L +L+L+  +++    + F  +  L VL L  N IT       K L  LE L L 
Sbjct: 263 LGMKALRWLDLSHNRVAGLLEDTFPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEELQLG 322

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
              I   G     GL  L+ L L+D Q+    +   SGL N+  +NLS   + +   R  
Sbjct: 323 HNRIRQLGEKTFEGLGQLEVLTLNDNQIHEVKMGAFSGLFNVAVMNLSGNCLRNLPERVF 382

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
            GLS L SL+L+   +    L   T L+GL  L L G  I+ +    L     L  L++ 
Sbjct: 383 QGLSKLHSLHLEHSCLGRIRLHTFTGLSGLRRLFLRGNSISITEEQSLAGLSELLELDLT 442

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
              LT    +  + L  L  L LS N  L+  + +++S L  +  L++S++R+ +
Sbjct: 443 ANQLTHLPRRLFQGLGQLEYLLLSNN-RLSALSEDVLSPLQRVFWLDISHNRLEA 496



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 145/364 (39%), Gaps = 19/364 (5%)

Query: 72  SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
            GL HL D +    L +N  + + D   +   GL NL  L    N     Q    F GL 
Sbjct: 167 QGLGHLWDLN----LGWNSLVVLPDMVFQ---GLGNLRELVLAGNKLAYLQP-SLFCGLG 218

Query: 132 NLVKLDLERCTRIHGGLVNLKG-----LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
            L +LDL R       L ++K      L +L+ L +   N +T        G+  L+ L 
Sbjct: 219 ELRELDLSR-----NALRSVKANVFIHLPRLQKLYLD-RNFVTAVAPGAFLGMKALRWLD 272

Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
           +S ++V         GL  L +L L    +T+    +   L  L  L L   ++   G +
Sbjct: 273 LSHNRVAGLLEDTFPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEELQLGHNRIRQLGEK 332

Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
            F  +G L+VL L  N+I +  +    GL N+  +NL    + +       GL  L  L 
Sbjct: 333 TFEGLGQLEVLTLNDNQIHEVKMGAFSGLFNVAVMNLSGNCLRNLPERVFQGLSKLHSLH 392

Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
           L  + +G   L   +GL+ L  + L    IS    + LAGLS L  L+L A Q+T     
Sbjct: 393 LEHSCLGRIRLHTFTGLSGLRRLFLRGNSISITEEQSLAGLSELLELDLTANQLTHLPRR 452

Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
               L  L +L L   R++      L   + +  L+I    L          L  L  L+
Sbjct: 453 LFQGLGQLEYLLLSNNRLSALSEDVLSPLQRVFWLDISHNRLEALSEGLFSPLGRLRYLS 512

Query: 427 LSQN 430
           L  N
Sbjct: 513 LRNN 516



 Score = 45.4 bits (106), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 112/255 (43%), Gaps = 42/255 (16%)

Query: 47  KWMDVIASQGSSLLS-----------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQIS 95
           +W+D+  ++ + LL            + L+ + +T       KD   L+ L      +I 
Sbjct: 269 RWLDLSHNRVAGLLEDTFPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEELQLGHN-RIR 327

Query: 96  DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE-RCTRIHGGLVNLKGL 154
             G +   GL  L  L+   +N I    M AF+GL N+  ++L   C R     V  +GL
Sbjct: 328 QLGEKTFEGLGQLEVLTLN-DNQIHEVKMGAFSGLFNVAVMNLSGNCLRNLPERV-FQGL 385

Query: 155 MKLESLNIKWC-----------------------NCITDSDMKPLSGLTNLKSLQISCSK 191
            KL SL+++                         N I+ ++ + L+GL+ L  L ++ ++
Sbjct: 386 SKLHSLHLEHSCLGRIRLHTFTGLSGLRRLFLRGNSISITEEQSLAGLSELLELDLTANQ 445

Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL--NRCQLSDDGCEKFS 249
           +T       +GL +L  L L    ++A   D LS L  +F+L++  NR +   +G   FS
Sbjct: 446 LTHLPRRLFQGLGQLEYLLLSNNRLSALSEDVLSPLQRVFWLDISHNRLEALSEGL--FS 503

Query: 250 KIGSLKVLNLGFNEI 264
            +G L+ L+L  N +
Sbjct: 504 PLGRLRYLSLRNNSL 518


>gi|290350830|dbj|BAI78336.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LTPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 121/251 (48%), Gaps = 47/251 (18%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQN--CNLTDKTLELISGLTGLVSLNVSNSRITS- 459
           + G  L D G   +  L++LT L+L+ N   NLT      +SGLT L  L +  ++I++ 
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQISNLTP-----LSGLTKLTELKLGANQISNI 310

Query: 460 ---AGLRHLNH 467
              AGL  L +
Sbjct: 311 SPLAGLTALTN 321


>gi|223698892|gb|ACN19168.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 15  LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 68

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 69  IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 120

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 121 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 173

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 174 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 227

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 228 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 285

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 286 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 343

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 344 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 43/247 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 7   DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 60  TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 227

Query: 460 -AGLRHL 465
            AGL  L
Sbjct: 228 LAGLTAL 234


>gi|256395747|ref|YP_003117311.1| hypothetical protein Caci_6624 [Catenulispora acidiphila DSM 44928]
 gi|256361973|gb|ACU75470.1| hypothetical protein Caci_6624 [Catenulispora acidiphila DSM 44928]
          Length = 175

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 74/124 (59%), Gaps = 2/124 (1%)

Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
           +F  +G+ +V     + +T E LV L G+  L +LNL++  IGD+ L  +  L  L+ L+
Sbjct: 7   RFFDVGAERVY--ADDRVTREDLVALAGMPRLRALNLNTAAIGDDDLEAVGRLVGLQDLD 64

Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
           +S T +  +G+RHLSGLT++  + +  T ++D  LR LA + +L+++NL    I+D GL 
Sbjct: 65  VSTTDITDAGVRHLSGLTDMRHLRIKETRVTDAGLRLLAPMGALETVNLRRLDISDEGLR 124

Query: 367 ALTS 370
            L  
Sbjct: 125 GLAE 128



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 82/151 (54%), Gaps = 7/151 (4%)

Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
           +R TR    LV L G+ +L +LN+     I D D++ +  L  L+ L +S + +TD+G+ 
Sbjct: 20  DRVTR--EDLVALAGMPRLRALNLNTA-AIGDDDLEAVGRLVGLQDLDVSTTDITDAGVR 76

Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
           +L GL  +  L ++   VT A L  L+ +G+L  +NL R  +SD+G    ++    + L+
Sbjct: 77  HLSGLTDMRHLRIKETRVTDAGLRLLAPMGALETVNLRRLDISDEGLRGLAE--RHRCLD 134

Query: 259 -LGFNEITDECLVHLKGLTNLESLNLDSCGI 288
            +  ++  DEC   + GL  ++ L L +C I
Sbjct: 135 TIVISDEVDECRFTVAGLAEVQRL-LPACEI 164



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 53/98 (54%)

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
           E LV L G+  L+ L L+   +G   L  +  L  L+ +++S T I+D  +R L+GL+ +
Sbjct: 25  EDLVALAGMPRLRALNLNTAAIGDDDLEAVGRLVGLQDLDVSTTDITDAGVRHLSGLTDM 84

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
           + L +   ++TD GL  L  +  L  ++L    I+D G
Sbjct: 85  RHLRIKETRVTDAGLRLLAPMGALETVNLRRLDISDEG 122



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 6/132 (4%)

Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
           +D +V    L  L+G+  L ++NL+   I D  L  +  L  L+ L++    ITD G+  
Sbjct: 18  ADDRVTREDLVALAGMPRLRALNLNTAAIGDDDLEAVGRLVGLQDLDVSTTDITDAGVRH 77

Query: 368 LTSLTGLTHLDLFGARITDSGAAYLRNFK-----NLRSLEICGGGLTDAGVKHIKDLSSL 422
           L+ LT + HL +   R+TD+G   L         NLR L+I   GL     +H + L ++
Sbjct: 78  LSGLTDMRHLRIKETRVTDAGLRLLAPMGALETVNLRRLDISDEGLRGLAERH-RCLDTI 136

Query: 423 TLLNLSQNCNLT 434
            + +    C  T
Sbjct: 137 VISDEVDECRFT 148



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 24/130 (18%)

Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
           VT   L +L+ +  L  LNLN   + DD  E   ++  L+ L++   +ITD  + HL GL
Sbjct: 22  VTREDLVALAGMPRLRALNLNTAAIGDDDLEAVGRLVGLQDLDVSTTDITDAGVRHLSGL 81

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
           T                        +++ L + +T+V  +GLR L+ +  LE++NL    
Sbjct: 82  T------------------------DMRHLRIKETRVTDAGLRLLAPMGALETVNLRRLD 117

Query: 336 ISDGSLRKLA 345
           ISD  LR LA
Sbjct: 118 ISDEGLRGLA 127



 Score = 45.1 bits (105), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 25/122 (20%)

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           LAG+  L++LNL+   I D  L A+  L GL  LD                        +
Sbjct: 30  LAGMPRLRALNLNTAAIGDDDLEAVGRLVGLQDLD------------------------V 65

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
               +TDAGV+H+  L+ +  L + +   +TD  L L++ +  L ++N+    I+  GLR
Sbjct: 66  STTDITDAGVRHLSGLTDMRHLRIKET-RVTDAGLRLLAPMGALETVNLRRLDISDEGLR 124

Query: 464 HL 465
            L
Sbjct: 125 GL 126



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 51/106 (48%)

Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
           +VT   +  L G+ +L  LNL    +    L+++  L  L  L+++   ++D G    S 
Sbjct: 21  RVTREDLVALAGMPRLRALNLNTAAIGDDDLEAVGRLVGLQDLDVSTTDITDAGVRHLSG 80

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
           +  ++ L +    +TD  L  L  +  LE++NL    I DEGL  L
Sbjct: 81  LTDMRHLRIKETRVTDAGLRLLAPMGALETVNLRRLDISDEGLRGL 126


>gi|344270426|ref|XP_003407045.1| PREDICTED: F-box/LRR-repeat protein 13 [Loxodonta africana]
          Length = 680

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 127/463 (27%), Positives = 216/463 (46%), Gaps = 87/463 (18%)

Query: 20  LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL- 77
           L   +L++   C  LQ+L +   P + D+ M  I+     +L ++LS + +T+  +  L 
Sbjct: 178 LKPKTLKSVSHCRNLQELNVSDCPTLTDESMRHISEGCPGVLYLNLSNTGITNRTMRLLP 237

Query: 78  KDCSNLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFA----GL 130
           ++  NLQ+L   +C + +D GL++L   +G   LT L       I+ QG +  A    G+
Sbjct: 238 RNFHNLQNLSLAYCRKFTDKGLQYLNLGKGCHKLTYLDLSGCTQISVQGFRNIANSCSGI 297

Query: 131 INL------------VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           ++L            VK  +E+C+RI    V   G              I+D   K LS 
Sbjct: 298 MHLTINDMPTLTDKCVKALVEKCSRITS--VVFIGAPH-----------ISDCAFKALST 344

Query: 179 LTNLKSLQISCSK-VTDSGIAYL----KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
             NL+ ++   +K +TDS   ++      ++ + +++ +G  +T   L SLS L  L  L
Sbjct: 345 -CNLRKIRFEGNKRITDSCFKFIDKHYPNIRHIYMVDCKG--LTDGSLKSLSVLKQLTVL 401

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEG 292
           NL  C            +G   + ++G  ++ D  +      T +  LNL++C  +GD  
Sbjct: 402 NLANC------------VG---IGDVGLKQLLDGPVS-----TKIRELNLNNCIHLGDAS 441

Query: 293 LVNLTGLC-NLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
           +V L+  C NL  L L + + +   G+ H+  + +L S++LS T IS+  L  L+    L
Sbjct: 442 IVRLSERCPNLNYLNLRNCEHLTDLGIEHIVNIFSLVSVDLSGTVISNEGLMTLSRHKKL 501

Query: 351 KSLNL-DARQITDTGLAALT--SLTGLTHLDL-FGARITDSGAAYLRNF-KNLRSLEICG 405
           K L+L +  +ITD G+ A    SL  L HLD+ +  +++D     L  +  +L SL I G
Sbjct: 502 KELSLSECYKITDMGIQAFCKGSLI-LEHLDVSYCPQLSDEIIKALAIYCISLTSLSIAG 560

Query: 406 -GGLTDAGVK---------HIKDLSSLTLL------NLSQNCN 432
              +TD+ ++         HI D+S   LL      NL + CN
Sbjct: 561 CPKITDSAMELLSAKCHYLHILDISGCILLTDQILENLQRGCN 603



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 160/378 (42%), Gaps = 80/378 (21%)

Query: 117 NAITAQGMKAFA-----------GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
           NAI    MK+ A             +N+++L+   C      L ++     L+ LN+  C
Sbjct: 141 NAIDFSTMKSMAIDKYITSTLQRWRLNVLRLNFRGCLLKPKTLKSVSHCRNLQELNVSDC 200

Query: 166 NCITDSDMKPLS--------------GLTN------------LKSLQIS-CSKVTDSGIA 198
             +TD  M+ +S              G+TN            L++L ++ C K TD G+ 
Sbjct: 201 PTLTDESMRHISEGCPGVLYLNLSNTGITNRTMRLLPRNFHNLQNLSLAYCRKFTDKGLQ 260

Query: 199 YL---KGLQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGC-----EKF 248
           YL   KG  KLT L+L GC  ++     +++ +   + +L +N      D C     EK 
Sbjct: 261 YLNLGKGCHKLTYLDLSGCTQISVQGFRNIANSCSGIMHLTINDMPTLTDKCVKALVEKC 320

Query: 249 SKIGSL----------------------KVLNLGFNEITDECLVHL-KGLTNLESLNLDS 285
           S+I S+                      K+   G   ITD C   + K   N+  + +  
Sbjct: 321 SRITSVVFIGAPHISDCAFKALSTCNLRKIRFEGNKRITDSCFKFIDKHYPNIRHIYMVD 380

Query: 286 C-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHL---SGLTNLESINLS-FTGISDG 339
           C G+ D  L +L+ L  L  L L++   +G  GL+ L      T +  +NL+    + D 
Sbjct: 381 CKGLTDGSLKSLSVLKQLTVLNLANCVGIGDVGLKQLLDGPVSTKIRELNLNNCIHLGDA 440

Query: 340 SLRKLAG-LSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
           S+ +L+    +L  LNL +   +TD G+  + ++  L  +DL G  I++ G   L   K 
Sbjct: 441 SIVRLSERCPNLNYLNLRNCEHLTDLGIEHIVNIFSLVSVDLSGTVISNEGLMTLSRHKK 500

Query: 398 LRSLEICG-GGLTDAGVK 414
           L+ L +     +TD G++
Sbjct: 501 LKELSLSECYKITDMGIQ 518



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 31/163 (19%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           SL+SVDLSG+ +++ GL+ L     L+ L  + C +I+D G++                 
Sbjct: 476 SLVSVDLSGTVISNEGLMTLSRHKKLKELSLSECYKITDMGIQ----------------- 518

Query: 118 AITAQGMKAF-AGLINLVKLDLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMK 174
                   AF  G + L  LD+  C ++   ++    +  + L SL+I  C  ITDS M+
Sbjct: 519 --------AFCKGSLILEHLDVSYCPQLSDEIIKALAIYCISLTSLSIAGCPKITDSAME 570

Query: 175 PLSGLTN-LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC 214
            LS   + L  L IS C  +TD  +  L +G  +L +L +  C
Sbjct: 571 LLSAKCHYLHILDISGCILLTDQILENLQRGCNQLRILKMRYC 613


>gi|290997409|ref|XP_002681274.1| predicted protein [Naegleria gruberi]
 gi|284094897|gb|EFC48530.1| predicted protein [Naegleria gruberi]
          Length = 237

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 114/229 (49%), Gaps = 1/229 (0%)

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           L  +T L +L+I  + + D+ +  +  +++LT L+LE   +      S+S L +L YLN+
Sbjct: 2   LGRMTQLTTLEIGNNLIDDNMVKLISEMKQLTCLDLEINQIFNEGAKSISELRNLTYLNI 61

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
               ++D+G E   ++ +L  L +    IT +    +  L NL  LN+    IGDEG   
Sbjct: 62  GNNPINDEGIESICQLDNLTDLTVSSLRITSKSAKFISKLNNLTFLNIAYNNIGDEGAKF 121

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLN 354
           ++ + +LK L++S   +   G + +S L  L  + +S   GI D   R ++ +  L  L 
Sbjct: 122 ISEIKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFGIGDEGARMISEMKQLNELY 181

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           +    I + G  +++ +  LTHLD+    I   G   +R+ K+L  L I
Sbjct: 182 IQDCFIGNAGAISISRMDKLTHLDISENEIQIEGETVIRDMKHLSYLSI 230



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 97/187 (51%)

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           +T L +L + +  I D  +  ++ +  L CL+L   Q+ + G + +S L NL  +N+   
Sbjct: 5   MTQLTTLEIGNNLIDDNMVKLISEMKQLTCLDLEINQIFNEGAKSISELRNLTYLNIGNN 64

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            I+D  +  +  L +L  L + + +IT      ++ L  LT L++    I D GA ++  
Sbjct: 65  PINDEGIESICQLDNLTDLTVSSLRITSKSAKFISKLNNLTFLNIAYNNIGDEGAKFISE 124

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
            K+L+ L+I   G++  G K I +L  LT+L +SQN  + D+   +IS +  L  L + +
Sbjct: 125 IKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFGIGDEGARMISEMKQLNELYIQD 184

Query: 455 SRITSAG 461
             I +AG
Sbjct: 185 CFIGNAG 191



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 113/253 (44%), Gaps = 36/253 (14%)

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
           ++ LT+L    NN I    +K  + +  L  LDLE                         
Sbjct: 5   MTQLTTLEIG-NNLIDDNMVKLISEMKQLTCLDLE------------------------- 38

Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
            N I +   K +S L NL  L I  + + D GI  +  L  LT L +    +T+     +
Sbjct: 39  INQIFNEGAKSISELRNLTYLNIGNNPINDEGIESICQLDNLTDLTVSSLRITSKSAKFI 98

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL- 283
           S L +L +LN+    + D+G +  S+I SLK+L++  N I+    +  K ++ L+ L + 
Sbjct: 99  SKLNNLTFLNIAYNNIGDEGAKFISEIKSLKILDISLNGISP---IGAKSISELDQLTVL 155

Query: 284 ---DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS--- 337
               + GIGDEG   ++ +  L  L + D  +G++G   +S +  L  +++S   I    
Sbjct: 156 YISQNFGIGDEGARMISEMKQLNELYIQDCFIGNAGAISISRMDKLTHLDISENEIQIEG 215

Query: 338 DGSLRKLAGLSSL 350
           +  +R +  LS L
Sbjct: 216 ETVIRDMKHLSYL 228



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 75/148 (50%), Gaps = 1/148 (0%)

Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
           L  +T L ++ +    I D  ++ ++ +  L  L+L+  QI + G  +++ L  LT+L++
Sbjct: 2   LGRMTQLTTLEIGNNLIDDNMVKLISEMKQLTCLDLEINQIFNEGAKSISELRNLTYLNI 61

Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
               I D G   +    NL  L +    +T    K I  L++LT LN++ N N+ D+  +
Sbjct: 62  GNNPINDEGIESICQLDNLTDLTVSSLRITSKSAKFISKLNNLTFLNIAYN-NIGDEGAK 120

Query: 440 LISGLTGLVSLNVSNSRITSAGLRHLNH 467
            IS +  L  L++S + I+  G + ++ 
Sbjct: 121 FISEIKSLKILDISLNGISPIGAKSISE 148


>gi|194239392|emb|CAQ76836.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|148607492|gb|ABQ95522.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|130774809|gb|ABO32417.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|130774825|gb|ABO32425.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|130774793|gb|ABO32411.1| InlA [Listeria monocytogenes]
 gi|194239384|emb|CAQ76832.1| internalin A [Listeria monocytogenes]
          Length = 797

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|223698622|gb|ACN18988.1| internalin A [Listeria monocytogenes]
 gi|223698634|gb|ACN18996.1| internalin A [Listeria monocytogenes]
 gi|223698694|gb|ACN19036.1| internalin A [Listeria monocytogenes]
 gi|223698712|gb|ACN19048.1| internalin A [Listeria monocytogenes]
 gi|223698745|gb|ACN19070.1| internalin A [Listeria monocytogenes]
 gi|223698751|gb|ACN19074.1| internalin A [Listeria monocytogenes]
 gi|223698766|gb|ACN19084.1| internalin A [Listeria monocytogenes]
 gi|223698769|gb|ACN19086.1| internalin A [Listeria monocytogenes]
 gi|223698772|gb|ACN19088.1| internalin A [Listeria monocytogenes]
 gi|223698775|gb|ACN19090.1| internalin A [Listeria monocytogenes]
 gi|223698778|gb|ACN19092.1| internalin A [Listeria monocytogenes]
 gi|223698787|gb|ACN19098.1| internalin A [Listeria monocytogenes]
 gi|223698793|gb|ACN19102.1| internalin A [Listeria monocytogenes]
 gi|223698799|gb|ACN19106.1| internalin A [Listeria monocytogenes]
 gi|223698802|gb|ACN19108.1| internalin A [Listeria monocytogenes]
 gi|223698805|gb|ACN19110.1| internalin A [Listeria monocytogenes]
 gi|223698817|gb|ACN19118.1| internalin A [Listeria monocytogenes]
 gi|223698859|gb|ACN19146.1| internalin A [Listeria monocytogenes]
 gi|223698865|gb|ACN19150.1| internalin A [Listeria monocytogenes]
 gi|223698979|gb|ACN19226.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 15  LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 68

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 69  IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 120

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 121 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 173

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 174 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 227

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 228 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 285

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 286 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 343

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 344 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 43/247 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 7   DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 60  TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 227

Query: 460 -AGLRHL 465
            AGL  L
Sbjct: 228 LAGLTAL 234


>gi|22347554|gb|AAM95922.1| internalin A precursor [Listeria monocytogenes]
          Length = 741

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 44  LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 97

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 98  IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 149

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 150 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 202

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 203 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 256

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 257 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 314

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 315 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 372

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 373 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 403



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 36  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 88

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 89  TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 143

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 144 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 201

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 202 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 256

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 257 LAGLTALTN 265


>gi|887862|gb|AAA69530.1| internalin, partial [Listeria monocytogenes]
          Length = 344

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 167/329 (50%), Gaps = 39/329 (11%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 24  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 77

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L++   N +TD  +KPL
Sbjct: 78  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSL--GNQVTD--LKPL 129

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 130 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 182

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 183 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLPGLTKLTELKLGANQISN--I 236

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD  +  ++ L+ L+ L
Sbjct: 237 XPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 292

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
                +++D     ++SL  LT+++   A
Sbjct: 293 FFYNNKVSD-----VSSLANLTNINWLSA 316



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 116/255 (45%), Gaps = 59/255 (23%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 18  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 70

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+L   Q+TD
Sbjct: 71  TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSL-GNQVTD 125

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 126 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 183

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD--------KTLELISGLTGLVSLNVSN 454
           + G  L D G      L+SLT        NLTD          L  + GLT L  L +  
Sbjct: 184 LNGNQLKDIGT-----LASLT--------NLTDLDLANNQISNLAPLPGLTKLTELKLGA 230

Query: 455 SRITS----AGLRHL 465
           ++I++    AGL  L
Sbjct: 231 NQISNIXPLAGLTAL 245


>gi|357150706|ref|XP_003575549.1| PREDICTED: F-box/LRR-repeat protein 3-like [Brachypodium
           distachyon]
          Length = 666

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 128/445 (28%), Positives = 196/445 (44%), Gaps = 77/445 (17%)

Query: 32  ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNF 90
           A++ +CL +  GV  + +D + +    L +VDLS      D     L   + L+ L+   
Sbjct: 110 AVRQVCLARASGVGWRGLDALVAACPRLEAVDLSHCVGAGDREAAALAAAAGLRELNLEK 169

Query: 91  CIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGL 148
           C+ ++D GL  +  G   L  LSF+    I+  G+         L  LD+      +  L
Sbjct: 170 CLGVTDMGLAKVAVGCPKLEKLSFKWCREISDIGVDLLVKKCRELRNLDISYLEVSNESL 229

Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL----KG 202
            ++  L KLE L++  C CI D  ++ LS G  +L+S+ +S C  VT  G+A L      
Sbjct: 230 RSISTLEKLEELSMVGCLCIDDKGLELLSRGSNSLQSVDVSRCDHVTSEGLASLIDGHSF 289

Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK----VLN 258
           LQKL           AA  DSL  +G  F                 SK+ +LK    +L 
Sbjct: 290 LQKL----------NAA--DSLHEIGQNF----------------LSKLATLKETLTMLR 321

Query: 259 LGFNEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLC------NLKCLE-LSD 309
           L   E++   L+ + +G  NL  + L  C G+ DEG+ +L   C      +L C   L+D
Sbjct: 322 LDGFEVSSSLLLAIAEGCNNLVEVGLSKCNGVTDEGISSLVARCGYLRKIDLTCCNLLTD 381

Query: 310 TQVGS---------------------SGLRHLSG-LTNLESINLSFTGISDGSLRKLAGL 347
             + S                      GL  ++    NL  I+L+  G++D +L+ LA  
Sbjct: 382 NALVSIADNCKMLECLLLESCSSLSEKGLERIATCCPNLSEIDLTDCGVNDAALQHLAKC 441

Query: 348 SSLKSLNLD-ARQITDTGLAALTS-LTGLTHLDLFGAR-ITDSGAAYL-RNFKNLRSLEI 403
           S L  L L     I+D GL  ++S    LT +DL+    ITD G A L +  K ++ L +
Sbjct: 442 SELLILKLGLCSSISDKGLGFISSKCVKLTEVDLYRCNSITDDGLATLAKGCKKIKMLNL 501

Query: 404 CG-GGLTDAGVKHIKDLSSLTLLNL 427
           C    +TD G+ H+  L  LT L L
Sbjct: 502 CYCNKITDGGLSHLGSLEELTNLEL 526



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 126/309 (40%), Gaps = 81/309 (26%)

Query: 47  KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG-L 105
           K ++ IA+   +L  +DL+   V D+ L HL  CS L  L    C  ISD GL  +    
Sbjct: 408 KGLERIATCCPNLSEIDLTDCGVNDAALQHLAKCSELLILKLGLCSSISDKGLGFISSKC 467

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
             LT +   R N+IT  G+   A                       KG  K++ LN+ +C
Sbjct: 468 VKLTEVDLYRCNSITDDGLATLA-----------------------KGCKKIKMLNLCYC 504

Query: 166 NCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
           N ITD  +  L  L  L +L++ C  ++T  GI+                 V   C    
Sbjct: 505 NKITDGGLSHLGSLEELTNLELRCLVRITGIGIS----------------SVAIGC---- 544

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
               SL  ++L RC   DD     S + +L    L                 NL  L + 
Sbjct: 545 ---KSLVEIDLKRCYSVDD-----SGLWALARYAL-----------------NLRQLTIS 579

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
            C +   GL +L  L +L+CL+  D +     + HLS ++ +E   ++      G L+KL
Sbjct: 580 YCQVTGLGLCHL--LSSLRCLQ--DVK-----MVHLSWVS-IEGFEMALRAAC-GRLKKL 628

Query: 345 AGLSSLKSL 353
             LSSLKS+
Sbjct: 629 KMLSSLKSV 637


>gi|167861900|gb|ACA05649.1| InlA [Listeria monocytogenes]
 gi|194326161|emb|CAQ77239.1| internalin A [Listeria monocytogenes]
 gi|298360364|gb|ADI77761.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|290997259|ref|XP_002681199.1| predicted protein [Naegleria gruberi]
 gi|284094822|gb|EFC48455.1| predicted protein [Naegleria gruberi]
          Length = 449

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 120/260 (46%), Gaps = 20/260 (7%)

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           K +S  + L  L I CSK  +  I  +  L  LT LN   C +++  L  L  L  L  L
Sbjct: 155 KSISTFSQLTKLNIQCSKNINMIITSVGSLSNLTYLNASQCNISSVNLKFLQ-LFKLTKL 213

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +L++  +  DG +  + + +LK LNL    IT++C+ HL  LT L  LN+    IG+EGL
Sbjct: 214 DLSKNNIGGDGMKVIALLTNLKYLNLQDCNITNDCITHLTSLTKLVHLNVGDNYIGNEGL 273

Query: 294 VNLTGLCNLKCLELSD-----------------TQVGSSGLRHLSGLTNLESINLSFTGI 336
             ++ L NL  L +                    ++   G+ HL+ L NL  ++ S   I
Sbjct: 274 FLISSLRNLTYLSVERGTGRRFNERQVDIANQGMEINHQGIAHLTNLHNLRHLDFSGKPI 333

Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
            D  +  +  L+S++ LN+ +R      + +L     L +L++ G  I D GA  L    
Sbjct: 334 CDKGIEFIGKLNSIEILNV-SRCNCSGDIESLQKSPHLINLNIVGNPIGDKGAEILSRM- 391

Query: 397 NLRSLEICGGGLTDAGVKHI 416
            L  L     G++  GVK I
Sbjct: 392 TLEELNARNCGISYDGVKLI 411



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 161/363 (44%), Gaps = 28/363 (7%)

Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
           T   +KA   L  L +L L R   +  G  ++  L  + SL +++   +    M  L  L
Sbjct: 29  TVDELKALRHLSALKELTLLRELPLSYG--SIYYLNNITSLKVRFNTVVLIPRMNHLKHL 86

Query: 180 TNLKSLQISCSKVTD---SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
             L++     S+ TD     I  LK L+   ++      +     + LS L  L  L ++
Sbjct: 87  EILENPN-EKSQFTDIRVGTICKLKNLESF-VVRFPNPRLPPEYFEKLSVLSKLTELEIS 144

Query: 237 RCQLSD-DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
               +D +  +  S    L  LN+  ++  +  +  +  L+NL  LN   C I    L  
Sbjct: 145 TDSSNDWEKAKSISTFSQLTKLNIQCSKNINMIITSVGSLSNLTYLNASQCNISSVNLKF 204

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           L  L  L  L+LS   +G  G++ ++ LTNL+ +NL    I++  +  L  L+ L  LN+
Sbjct: 205 LQ-LFKLTKLDLSKNNIGGDGMKVIALLTNLKYLNLQDCNITNDCITHLTSLTKLVHLNV 263

Query: 356 DARQITDTGLAALTSLTGLTHLDLF-----------------GARITDSGAAYLRNFKNL 398
               I + GL  ++SL  LT+L +                  G  I   G A+L N  NL
Sbjct: 264 GDNYIGNEGLFLISSLRNLTYLSVERGTGRRFNERQVDIANQGMEINHQGIAHLTNLHNL 323

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
           R L+  G  + D G++ I  L+S+ +LN+S+ CN +   +E +     L++LN+  + I 
Sbjct: 324 RHLDFSGKPICDKGIEFIGKLNSIEILNVSR-CNCSGD-IESLQKSPHLINLNIVGNPIG 381

Query: 459 SAG 461
             G
Sbjct: 382 DKG 384



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 110/240 (45%), Gaps = 24/240 (10%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           SNL  L+ + C  IS   L+ L+ L  LT L   +NN I   GMK  A L NL  L+L+ 
Sbjct: 185 SNLTYLNASQC-NISSVNLKFLQ-LFKLTKLDLSKNN-IGGDGMKVIALLTNLKYLNLQD 241

Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS---------- 190
           C   +  + +L  L KL  LN+   N I +  +  +S L NL  L +             
Sbjct: 242 CNITNDCITHLTSLTKLVHLNV-GDNYIGNEGLFLISSLRNLTYLSVERGTGRRFNERQV 300

Query: 191 -------KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
                  ++   GIA+L  L  L  L+  G P+    ++ +  L S+  LN++RC  S D
Sbjct: 301 DIANQGMEINHQGIAHLTNLHNLRHLDFSGKPICDKGIEFIGKLNSIEILNVSRCNCSGD 360

Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
             E   K   L  LN+  N I D+    L  +T LE LN  +CGI  +G V L G   +K
Sbjct: 361 -IESLQKSPHLINLNIVGNPIGDKGAEILSRMT-LEELNARNCGISYDG-VKLIGNSKIK 417


>gi|219821387|gb|ACL37836.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 119/376 (31%), Positives = 173/376 (46%), Gaps = 58/376 (15%)

Query: 74  LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
           +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN IT   +     L NL
Sbjct: 55  ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNL 108

Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
            +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ LT L+ L IS +KV+
Sbjct: 109 NRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLERLDISSNKVS 162

Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSK 250
           D  +     L KLT  NLE    T   +  ++ LG   +L  L+LN  QL D G    + 
Sbjct: 163 DISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LAS 213

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
           + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  L GL  L  LEL++ 
Sbjct: 214 LTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNEN 269

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK----------------LAGLSSL 350
           Q+    +  +S L NL  + L F  ISD     SL K                LA L+++
Sbjct: 270 QL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI 327

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEIC 404
             L+    QI+D  L  L +LT +T L L     T+    Y  N       KN+    I 
Sbjct: 328 NWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKTNVSIPNTVKNVTGALIA 385

Query: 405 GGGLTDAGVKHIKDLS 420
              ++D G     D++
Sbjct: 386 PATISDGGSYAEPDIT 401



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 121/249 (48%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD----EGLVNLTG 298
           DG E    + +L  +N GFN++TD  +  LK LT L  + +++  I D      L NLTG
Sbjct: 34  DGLEY---LNNLTQINFGFNQLTD--ITPLKDLTKLVDIVMNNNQITDISPLANLTNLTG 88

Query: 299 LC----------------NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
           L                 NL  LELS   +  S +  LSGLTNL+   LSF G     L+
Sbjct: 89  LTLFNNQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVTDLK 143

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
            LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL  L 
Sbjct: 144 PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELS 199

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 254

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 255 LAGLTALTN 263


>gi|22347546|gb|AAM95918.1| internalin A precursor [Listeria monocytogenes]
 gi|22347550|gb|AAM95920.1| internalin A precursor [Listeria monocytogenes]
          Length = 744

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 44  LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 97

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 98  IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 149

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 150 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 202

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 203 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 256

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 257 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 314

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 315 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 372

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 373 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 403



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 36  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 88

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 89  TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 143

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 144 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 201

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 202 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 256

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 257 LAGLTALTN 265


>gi|294358401|gb|ADE73853.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LAGLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVNGALIAPATISDGGSYAEPDIT 459


>gi|148607482|gb|ABQ95519.1| InlA [Listeria monocytogenes]
          Length = 800

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321


>gi|443428862|gb|AGC92230.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL+ L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLISLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G      + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LGSLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 118/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLISLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LGSLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321



 Score = 39.3 bits (90), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 41/139 (29%)

Query: 316 GLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSL 371
           G++ + G   L NL  IN S   ++D  +  L  L+ L  + ++  QI D T LA LT+L
Sbjct: 87  GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNL 144

Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
           TGLT   LF  +ITD     L+N  NL  LE+    ++D                     
Sbjct: 145 TGLT---LFNNQITDLDP--LKNLTNLNRLELSSNTISD--------------------- 178

Query: 432 NLTDKTLELISGLTGLVSL 450
                    IS L+GL+SL
Sbjct: 179 ---------ISALSGLISL 188


>gi|406835554|ref|ZP_11095148.1| ribonuclease inhibitor [Schlesneria paludicola DSM 18645]
          Length = 392

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 125/277 (45%), Gaps = 32/277 (11%)

Query: 187 ISCSKVTDSGIAYL----KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           +  S++ DS I  L    +GL ++T +N +   VT+A   S+S L  L  L L+  ++++
Sbjct: 69  LKPSEINDSAITQLTSLSEGLNEITEINADFSTVTSAAFASISKLSKLRQLRLSSTRVTN 128

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           + CEK +++ +L+VL L    + D  +  L  L+NL+SL L  C                
Sbjct: 129 EACEKIAELPALEVLILSDTVVDDVGVAALSRLSNLKSLELSRC---------------- 172

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
                    +  +G + +     LE + +  T + D SL  +    +L SL L    ITD
Sbjct: 173 --------HLTRAGFQAIGAFPALEYLEIRRTNLDDVSLDLVCNAKTLVSLRLSNNPITD 224

Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNF---KNLRSLEICGGGLTDAGVKHIKDL 419
            GL AL  L G+  L+     I   G A+ +     KNL+ L +    L   G K I + 
Sbjct: 225 QGLDALGKLPGIEVLEFNETGIHGWGLAHAQKRGGGKNLKELSLFKCPLDGMGAKAIGNF 284

Query: 420 SSLTLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNS 455
            S+  L L +   L D+ L  ++ G+  L  LN S +
Sbjct: 285 KSVEKLVLGEIPQLDDEGLMTMVRGMKNLKYLNCSKT 321



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 4/165 (2%)

Query: 302 LKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
           LK  E++D+ +  + L  LS GL  +  IN  F+ ++  +   ++ LS L+ L L + ++
Sbjct: 69  LKPSEINDSAI--TQLTSLSEGLNEITEINADFSTVTSAAFASISKLSKLRQLRLSSTRV 126

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           T+     +  L  L  L L    + D G A L    NL+SLE+    LT AG + I    
Sbjct: 127 TNEACEKIAELPALEVLILSDTVVDDVGVAALSRLSNLKSLELSRCHLTRAGFQAIGAFP 186

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           +L  L + +  NL D +L+L+     LVSL +SN+ IT  GL  L
Sbjct: 187 ALEYLEI-RRTNLDDVSLDLVCNAKTLVSLRLSNNPITDQGLDAL 230



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 132/299 (44%), Gaps = 37/299 (12%)

Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
           +GL ++  +N  + + +T +    +S L+ L+ L++S ++VT+     +  L  L +L L
Sbjct: 87  EGLNEITEINADF-STVTSAAFASISKLSKLRQLRLSSTRVTNEACEKIAELPALEVLIL 145

Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
               V    + +LS L +L  L L+RC L+  G +      +L+ L +    + D  L  
Sbjct: 146 SDTVVDDVGVAALSRLSNLKSLELSRCHLTRAGFQAIGAFPALEYLEIRRTNLDDVSLDL 205

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS---GLTNLES 328
           +     L SL L +  I D+GL  L  L  ++ LE ++T +   GL H     G  NL+ 
Sbjct: 206 VCNAKTLVSLRLSNNPITDQGLDALGKLPGIEVLEFNETGIHGWGLAHAQKRGGGKNLKE 265

Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLD--------- 378
           ++L    +     + +    S++ L L +  Q+ D GL  +T + G+ +L          
Sbjct: 266 LSLFKCPLDGMGAKAIGNFKSVEKLVLGEIPQLDDEGL--MTMVRGMKNLKYLNCSKTPS 323

Query: 379 LFG---------------------ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
           LFG                     +RI D    +++  KNL+ L + G  ++  G+  +
Sbjct: 324 LFGTLGFKALLGSKDLEELHIGECSRIGDDAVPFIKKMKNLKILRVHGTSISARGMAEL 382



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 5/186 (2%)

Query: 283 LDSCGIGDEGLVNLT----GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
           L    I D  +  LT    GL  +  +    + V S+    +S L+ L  + LS T +++
Sbjct: 69  LKPSEINDSAITQLTSLSEGLNEITEINADFSTVTSAAFASISKLSKLRQLRLSSTRVTN 128

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
            +  K+A L +L+ L L    + D G+AAL+ L+ L  L+L    +T +G   +  F  L
Sbjct: 129 EACEKIAELPALEVLILSDTVVDDVGVAALSRLSNLKSLELSRCHLTRAGFQAIGAFPAL 188

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             LEI    L D  +  + +  +L  L LS N  +TD+ L+ +  L G+  L  + + I 
Sbjct: 189 EYLEIRRTNLDDVSLDLVCNAKTLVSLRLSNN-PITDQGLDALGKLPGIEVLEFNETGIH 247

Query: 459 SAGLRH 464
             GL H
Sbjct: 248 GWGLAH 253



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 117/274 (42%), Gaps = 51/274 (18%)

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
           LS + V D G+  L   SNL+SL+ + C  ++  G + +     L  L  RR N      
Sbjct: 145 LSDTVVDDVGVAALSRLSNLKSLELSRC-HLTRAGFQAIGAFPALEYLEIRRTN------ 197

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
                  ++ V LDL         + N K L+ L   N    N ITD  +  L  L  ++
Sbjct: 198 -------LDDVSLDL---------VCNAKTLVSLRLSN----NPITDQGLDALGKLPGIE 237

Query: 184 SLQISCSKVTDSGIAYLK---GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-Q 239
            L+ + + +   G+A+ +   G + L  L+L  CP+      ++    S+  L L    Q
Sbjct: 238 VLEFNETGIHGWGLAHAQKRGGGKNLKELSLFKCPLDGMGAKAIGNFKSVEKLVLGEIPQ 297

Query: 240 LSDDGCEKFSK-IGSLKVLN----------LGFNEITDECLVHLKGLTNLESLNLDSCG- 287
           L D+G     + + +LK LN          LGF          L G  +LE L++  C  
Sbjct: 298 LDDEGLMTMVRGMKNLKYLNCSKTPSLFGTLGFK--------ALLGSKDLEELHIGECSR 349

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
           IGD+ +  +  + NLK L +  T + + G+  L+
Sbjct: 350 IGDDAVPFIKKMKNLKILRVHGTSISARGMAELA 383



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 19/224 (8%)

Query: 14  LVYSRC-LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDS 72
           L  SRC LT    +A       +    +   ++D  +D++ +   +L+S+ LS + +TD 
Sbjct: 167 LELSRCHLTRAGFQAIGAFPALEYLEIRRTNLDDVSLDLVCN-AKTLVSLRLSNNPITDQ 225

Query: 73  GLIHLKDCSNLQSLDFNFCIQISDGGLEHLR---GLSNLTSLSFRRNNAITAQGMKAFAG 129
           GL  L     ++ L+FN    I   GL H +   G  NL  LS  +   +   G KA   
Sbjct: 226 GLDALGKLPGIEVLEFNET-GIHGWGLAHAQKRGGGKNLKELSLFK-CPLDGMGAKAIGN 283

Query: 130 LINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDM------KPLSGLTNL 182
             ++ KL L    ++   GL+ +   MK    N+K+ NC     +      K L G  +L
Sbjct: 284 FKSVEKLVLGEIPQLDDEGLMTMVRGMK----NLKYLNCSKTPSLFGTLGFKALLGSKDL 339

Query: 183 KSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           + L I  CS++ D  + ++K ++ L +L + G  ++A  +  L+
Sbjct: 340 EELHIGECSRIGDDAVPFIKKMKNLKILRVHGTSISARGMAELA 383


>gi|112961790|gb|ABI28546.1| internalin A [Listeria monocytogenes]
          Length = 693

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 122/386 (31%), Positives = 178/386 (46%), Gaps = 60/386 (15%)

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
            S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN IT   
Sbjct: 1   FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT--D 52

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
           +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ LT L+
Sbjct: 53  IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLANLTTLE 106

Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQL 240
            L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+LN  QL
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQL 159

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
            D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  L GL 
Sbjct: 160 KDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLT 213

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------------- 343
            L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K             
Sbjct: 214 ALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 271

Query: 344 ---LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------ 394
              LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N      
Sbjct: 272 VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNT 329

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLS 420
            KN+    I    ++D G     D++
Sbjct: 330 VKNVTGALIAPATISDGGSYAEPDIT 355



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 111/230 (48%), Gaps = 40/230 (17%)

Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
           N++TD  +  LK LT L  + +++  I D  +  L  L NL  L L + Q+  + +  L 
Sbjct: 4   NQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQI--TDIDPLK 57

Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
            LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD  L  L +LT L  LD+  
Sbjct: 58  NLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD--LKPLANLTTLERLDISS 112

Query: 382 ARITD-SGAAYLRNFK-------------------NLRSLEICGGGLTDAGVKHIKDLSS 421
            +++D S  A L N +                   NL  L + G  L D G   +  L++
Sbjct: 113 NKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTN 170

Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS----AGLRHLNH 467
           LT L+L+ N       L  +SGLT L  L +  ++I++    AGL  L +
Sbjct: 171 LTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 217


>gi|290993827|ref|XP_002679534.1| predicted protein [Naegleria gruberi]
 gi|284093151|gb|EFC46790.1| predicted protein [Naegleria gruberi]
          Length = 305

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 129/273 (47%), Gaps = 19/273 (6%)

Query: 199 YLKGLQKLTLLNLEGCPVTAACL-DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
           +L  + +L +  L+   +       +L  + +L  LN++  Q+  +G +  S +  L+ L
Sbjct: 14  FLGNIHRLMIYKLDDNAIYGEVFYRALQGMNNLTSLNISSQQIGPEGAKLVSGVKQLEKL 73

Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
            L FN +  E   ++  + NL SL + S  IGDEG ++L+G+  L  L++SD  +   G+
Sbjct: 74  ILVFNNVGTEGAKYISEMENLTSLIIRSNNIGDEGAIHLSGMKKLTNLDVSDNMIREDGM 133

Query: 318 RHLSGLTNLESI---------------NLSFTGISDG-SLRKLAGLSSLKSLNLDARQIT 361
           R +  +T L S                 L++  +S   S   +   ++L  L++    I 
Sbjct: 134 RAIRNMTQLRSFVDCGSCALEEVSKMDQLTYLDVSHNLSGAAIGKFNNLTWLSMVNTCIG 193

Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
           D  L  ++    LT L +    IT  G   L   K L++L I   G+ + GVK I ++  
Sbjct: 194 DNELELISKYPKLTKLFVSNNFITSEGVKPLSEMKQLKALHIGDNGINEEGVKIISEMKQ 253

Query: 422 LTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVS 453
           LT LN+ +  N+++   E L+   + L SLN++
Sbjct: 254 LTELNV-EGLNISENDREVLLCMKSQLKSLNIT 285



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 91/190 (47%), Gaps = 17/190 (8%)

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           L G+ NL  L +S  Q+G  G + +SG+  LE + L F  +     + ++ + +L SL +
Sbjct: 40  LQGMNNLTSLNISSQQIGPEGAKLVSGVKQLEKLILVFNNVGTEGAKYISEMENLTSLII 99

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG--------- 406
            +  I D G   L+ +  LT+LD+    I + G   +RN   LRS   CG          
Sbjct: 100 RSNNIGDEGAIHLSGMKKLTNLDVSDNMIREDGMRAIRNMTQLRSFVDCGSCALEEVSKM 159

Query: 407 -GLTDAGVKH------IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
             LT   V H      I   ++LT L++   C + D  LELIS    L  L VSN+ ITS
Sbjct: 160 DQLTYLDVSHNLSGAAIGKFNNLTWLSMVNTC-IGDNELELISKYPKLTKLFVSNNFITS 218

Query: 460 AGLRHLNHAR 469
            G++ L+  +
Sbjct: 219 EGVKPLSEMK 228



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 130/264 (49%), Gaps = 14/264 (5%)

Query: 103 RGLSNLTSLSFRR--NNAITAQGM-KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
           R L N+  L   +  +NAI  +   +A  G+ NL  L++        G   + G+ +LE 
Sbjct: 13  RFLGNIHRLMIYKLDDNAIYGEVFYRALQGMNNLTSLNISSQQIGPEGAKLVSGVKQLEK 72

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
           L + + N  T+   K +S + NL SL I  + + D G  +L G++KLT L++    +   
Sbjct: 73  LILVFNNVGTEG-AKYISEMENLTSLIIRSNNIGDEGAIHLSGMKKLTNLDVSDNMIRED 131

Query: 220 CLDSLSALGSLF-YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
            + ++  +  L  +++   C L     E+ SK+  L  L++  N ++   +     LT L
Sbjct: 132 GMRAIRNMTQLRSFVDCGSCAL-----EEVSKMDQLTYLDVSHN-LSGAAIGKFNNLTWL 185

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
             +N  +C IGD  L  ++    L  L +S+  + S G++ LS +  L+++++   GI++
Sbjct: 186 SMVN--TC-IGDNELELISKYPKLTKLFVSNNFITSEGVKPLSEMKQLKALHIGDNGINE 242

Query: 339 GSLRKLAGLSSLKSLNLDARQITD 362
             ++ ++ +  L  LN++   I++
Sbjct: 243 EGVKIISEMKQLTELNVEGLNISE 266



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 94/235 (40%), Gaps = 49/235 (20%)

Query: 52  IASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
           I  +G+ L+S       + L  ++V   G  ++ +  NL SL       I D G  HL G
Sbjct: 56  IGPEGAKLVSGVKQLEKLILVFNNVGTEGAKYISEMENLTSLIIR-SNNIGDEGAIHLSG 114

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKL------DLERCTRIHGGLV-----NLKG 153
           +  LT+L    +N I   GM+A   +  L          LE  +++          NL G
Sbjct: 115 MKKLTNLDVS-DNMIREDGMRAIRNMTQLRSFVDCGSCALEEVSKMDQLTYLDVSHNLSG 173

Query: 154 LMKLESLNIKWC----------------------------NCITDSDMKPLSGLTNLKSL 185
               +  N+ W                             N IT   +KPLS +  LK+L
Sbjct: 174 AAIGKFNNLTWLSMVNTCIGDNELELISKYPKLTKLFVSNNFITSEGVKPLSEMKQLKAL 233

Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS-LFYLNLNRCQ 239
            I  + + + G+  +  +++LT LN+EG  ++    + L  + S L  LN+  C+
Sbjct: 234 HIGDNGINEEGVKIISEMKQLTELNVEGLNISENDREVLLCMKSQLKSLNITGCE 288



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 110/239 (46%), Gaps = 12/239 (5%)

Query: 53  ASQG-SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
           A QG ++L S+++S   +   G   +     L+ L   F   +   G +++  + NLTSL
Sbjct: 39  ALQGMNNLTSLNISSQQIGPEGAKLVSGVKQLEKLILVFN-NVGTEGAKYISEMENLTSL 97

Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
             R NN I  +G    +G+  L  LD+        G+  ++ + +L S    + +C    
Sbjct: 98  IIRSNN-IGDEGAIHLSGMKKLTNLDVSDNMIREDGMRAIRNMTQLRS----FVDC-GSC 151

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
            ++ +S +  L  L +S   ++ + I     L  L+++N   C +    L+ +S    L 
Sbjct: 152 ALEEVSKMDQLTYLDVS-HNLSGAAIGKFNNLTWLSMVNT--C-IGDNELELISKYPKLT 207

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
            L ++   ++ +G +  S++  LK L++G N I +E +  +  +  L  LN++   I +
Sbjct: 208 KLFVSNNFITSEGVKPLSEMKQLKALHIGDNGINEEGVKIISEMKQLTELNVEGLNISE 266


>gi|320163976|gb|EFW40875.1| tyrosine-protein kinase CSK [Capsaspora owczarzaki ATCC 30864]
          Length = 1378

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 151/350 (43%), Gaps = 7/350 (2%)

Query: 113 FRRNNAITAQGMKAFAGL--INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
           + ++N IT     AF GL  + ++ L   +   I  G     GL  L  +++ + N IT 
Sbjct: 65  YLQSNLITNIPASAFTGLTALQVIYLTSNQIVSISSGA--FSGLSALTYVSL-FNNLITS 121

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
                 + LT L  L +  + +T        GL  LT L+L G  +T+   ++ S L +L
Sbjct: 122 IPDSLFADLTALTYLGLHGNLITSMAATAFTGLNVLTRLSLYGNQITSISANAFSNLPAL 181

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
             L L   QL+    + F+ + +L  L L  NEIT         L  L  L+LDS  I D
Sbjct: 182 TTLALYDNQLTSIPADAFTGLSALTELTLYDNEITSISANSFTSLPALIILSLDSNRITD 241

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
                 TGL  L  L LS  Q+ S      +GL+ L+S+ L    I+   +    GL +L
Sbjct: 242 ISANAFTGLTALNILYLSHNQLSSISANAFTGLSGLDSLTLFNNEITSIHVDAFTGLPAL 301

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLT 409
            SL L +  IT       T+LT L  L L   +IT   A A+  +   L  L++    +T
Sbjct: 302 TSLYLQSNLITSIPPFVFTNLTALQILVLAYNQITGIPANAFTADLAALNYLDVSENQVT 361

Query: 410 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
                    L SL+ L L  N  +T        GLT L  L +S++  T+
Sbjct: 362 SIPANAFAGLHSLSSLFLQGN-QITSILTSTFQGLTALTHLILSDNPFTT 410



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 3/172 (1%)

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
           YL  N  Q++      F+ + +L +L +  N+IT        GLT +  LNL    +   
Sbjct: 543 YLQAN--QITSIPASAFAGLSALTILIMFNNKITSIDTDAFTGLTAMSQLNLQDNNLASI 600

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
               + GL  LK L+LS+ ++        +GLT L  + L+   I+  S      L +L 
Sbjct: 601 PASAIAGLTALKFLDLSNNKITDISSSEFTGLTALNYLWLNSNRITSISANAFTSLPALA 660

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
            + L A  IT     A   +T LT+LDL   RIT   A    +   L +L +
Sbjct: 661 FVWLRANWITAISANAFAGVT-LTYLDLQNNRITSIPANAFTSLTALNTLTL 711



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 3/185 (1%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           QI+        GLS LT L    NN IT+    AF GL  + +L+L+           + 
Sbjct: 548 QITSIPASAFAGLSALTIL-IMFNNKITSIDTDAFTGLTAMSQLNLQDNNLASIPASAIA 606

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
           GL  L+ L++   N ITD      +GLT L  L ++ +++T         L  L  + L 
Sbjct: 607 GLTALKFLDLS-NNKITDISSSEFTGLTALNYLWLNSNRITSISANAFTSLPALAFVWLR 665

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
              +TA   ++ + + +L YL+L   +++      F+ + +L  L L  N  T       
Sbjct: 666 ANWITAISANAFAGV-TLTYLDLQNNRITSIPANAFTSLTALNTLTLNDNPFTTLPPGLF 724

Query: 273 KGLTN 277
           KGL N
Sbjct: 725 KGLPN 729



 Score = 45.8 bits (107), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 2/164 (1%)

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
             GL  L  L + + ++ S      +GLT +  +NL    ++      +AGL++LK L+L
Sbjct: 557 FAGLSALTILIMFNNKITSIDTDAFTGLTAMSQLNLQDNNLASIPASAIAGLTALKFLDL 616

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
              +ITD   +  T LT L +L L   RIT   A    +   L  + +    +T      
Sbjct: 617 SNNKITDISSSEFTGLTALNYLWLNSNRITSISANAFTSLPALAFVWLRANWITAISANA 676

Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
              + +LT L+L QN  +T       + LT L +L ++++  T+
Sbjct: 677 FAGV-TLTYLDL-QNNRITSIPANAFTSLTALNTLTLNDNPFTT 718



 Score = 45.1 bits (105), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 85/199 (42%), Gaps = 2/199 (1%)

Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
           N+IT        GL+ L  L + +  I        TGL  +  L L D  + S     ++
Sbjct: 547 NQITSIPASAFAGLSALTILIMFNNKITSIDTDAFTGLTAMSQLNLQDNNLASIPASAIA 606

Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
           GLT L+ ++LS   I+D S  +  GL++L  L L++ +IT     A TSL  L  + L  
Sbjct: 607 GLTALKFLDLSNNKITDISSSEFTGLTALNYLWLNSNRITSISANAFTSLPALAFVWLRA 666

Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
             IT   A        L  L++    +T         L++L  L L+ N   T     L 
Sbjct: 667 NWITAISANAFAGV-TLTYLDLQNNRITSIPANAFTSLTALNTLTLNDN-PFTTLPPGLF 724

Query: 442 SGLTGLVSLNVSNSRITSA 460
            GL   + L+V+ S+  S 
Sbjct: 725 KGLPNGMVLSVAFSQYLSP 743



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 154/385 (40%), Gaps = 41/385 (10%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL- 151
           +I+   ++   GL  LTSL + ++N IT+     F  L  L  L L    +I G   N  
Sbjct: 286 EITSIHVDAFTGLPALTSL-YLQSNLITSIPPFVFTNLTALQILVLAY-NQITGIPANAF 343

Query: 152 -KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
              L  L  L++   N +T       +GL +L SL +  +++T    +  +GL  LT L 
Sbjct: 344 TADLAALNYLDVSE-NQVTSIPANAFAGLHSLSSLFLQGNQITSILTSTFQGLTALTHLI 402

Query: 211 LEGCPVTAACLDSLSALG--------SLFYLNLNRCQLSDDGCEKFSKIGSLK------- 255
           L   P T         L         +L Y++ N     ++     S  GS         
Sbjct: 403 LSDNPFTTLPPGLFKGLPNGLILSPPTLLYMSPNNFTFGENTVAPPSTYGSASEPYQCDT 462

Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC-NLKCLELSDTQVGS 314
           V    +   +D C      +    S+    C    EG + ++G C +  C        G+
Sbjct: 463 VCGTCYAAGSDACCPSNCLICTSSSV----CTQCSEGAMMVSGSCVSHAC--------GA 510

Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
            GL   SG T ++  N S T I        A  S+  ++ L A QIT    +A   L+ L
Sbjct: 511 GGLCTCSG-TTVDCQNRSLTVIPS------AMPSNTLTVYLQANQITSIPASAFAGLSAL 563

Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
           T L +F  +IT            +  L +    L       I  L++L  L+LS N  +T
Sbjct: 564 TILIMFNNKITSIDTDAFTGLTAMSQLNLQDNNLASIPASAIAGLTALKFLDLSNN-KIT 622

Query: 435 DKTLELISGLTGLVSLNVSNSRITS 459
           D +    +GLT L  L ++++RITS
Sbjct: 623 DISSSEFTGLTALNYLWLNSNRITS 647



 Score = 42.0 bits (97), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 1/187 (0%)

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           P +  +N  ++ +  +++T    +   GL  LT+L +    +T+   D+ + L ++  LN
Sbjct: 532 PSAMPSNTLTVYLQANQITSIPASAFAGLSALTILIMFNNKITSIDTDAFTGLTAMSQLN 591

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           L    L+       + + +LK L+L  N+ITD       GLT L  L L+S  I      
Sbjct: 592 LQDNNLASIPASAIAGLTALKFLDLSNNKITDISSSEFTGLTALNYLWLNSNRITSISAN 651

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
             T L  L  + L    + +      +G+T L  ++L    I+         L++L +L 
Sbjct: 652 AFTSLPALAFVWLRANWITAISANAFAGVT-LTYLDLQNNRITSIPANAFTSLTALNTLT 710

Query: 355 LDARQIT 361
           L+    T
Sbjct: 711 LNDNPFT 717


>gi|290994554|ref|XP_002679897.1| leucine rich repeat domain protein [Naegleria gruberi]
 gi|284093515|gb|EFC47153.1| leucine rich repeat domain protein [Naegleria gruberi]
          Length = 331

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 142/297 (47%), Gaps = 10/297 (3%)

Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ----ISCS 190
           K  L +C+ I    +N+  + +   L+I++ N ITDS    +     L+S      IS  
Sbjct: 37  KFILYKCSLISKQFLNV--INERAKLSIEFKN-ITDSKFNAVRKSQFLESFTSLKFISVE 93

Query: 191 KVTDSGIAYLKGLQK-LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
           +V D     L GL + LT L + G  +       +S    L  L ++  Q+  +G +  S
Sbjct: 94  EVFDIKYLELVGLMRNLTKLCVGGNEIGLQGAKIVSEFKQLTSLYIDSSQIGTEGAKLIS 153

Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
            +  L  L++  N +  E    + G+ +L  LN+ S  I  EG+ +++ + NL  L++  
Sbjct: 154 GMTKLTELDISANYLCAEGAKSISGMDHLTFLNISSSNIDQEGIKSISEMKNLTKLDICG 213

Query: 310 TQVGSSGLRHLSGLTNLESINLSFTGI-SDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
             +G+ G + +S +  L  +      + S+G++  ++ L  L +LN+   +I D G  A+
Sbjct: 214 NNLGAEGAKSISQMKQLTYLKAYTNSLRSEGAIF-ISELDKLTTLNICYNEIGDEGAKAI 272

Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
           + +  LT L + G RI   GA  +   K LR L+I    + + GVK++K +  LT L
Sbjct: 273 SQMPNLTDLRIDGNRIGPEGAKSISEMKQLRLLDISFNRIGEEGVKYVKGMKHLTRL 329



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 110/238 (46%), Gaps = 27/238 (11%)

Query: 91  CIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
           C+  ++ GL+  + +S    L+  +  ++ I  +G K  +G+  L +LD+          
Sbjct: 114 CVGGNEIGLQGAKIVSEFKQLTSLYIDSSQIGTEGAKLISGMTKLTELDIS--------- 164

Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
                            N +     K +SG+ +L  L IS S +   GI  +  ++ LT 
Sbjct: 165 ----------------ANYLCAEGAKSISGMDHLTFLNISSSNIDQEGIKSISEMKNLTK 208

Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
           L++ G  + A    S+S +  L YL      L  +G    S++  L  LN+ +NEI DE 
Sbjct: 209 LDICGNNLGAEGAKSISQMKQLTYLKAYTNSLRSEGAIFISELDKLTTLNICYNEIGDEG 268

Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
              +  + NL  L +D   IG EG  +++ +  L+ L++S  ++G  G++++ G+ +L
Sbjct: 269 AKAISQMPNLTDLRIDGNRIGPEGAKSISEMKQLRLLDISFNRIGEEGVKYVKGMKHL 326



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 104/207 (50%), Gaps = 1/207 (0%)

Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
           +G NEI  +    +     L SL +DS  IG EG   ++G+  L  L++S   + + G +
Sbjct: 115 VGGNEIGLQGAKIVSEFKQLTSLYIDSSQIGTEGAKLISGMTKLTELDISANYLCAEGAK 174

Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
            +SG+ +L  +N+S + I    ++ ++ + +L  L++    +   G  +++ +  LT+L 
Sbjct: 175 SISGMDHLTFLNISSSNIDQEGIKSISEMKNLTKLDICGNNLGAEGAKSISQMKQLTYLK 234

Query: 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
            +   +   GA ++     L +L IC   + D G K I  + +LT L +  N  +  +  
Sbjct: 235 AYTNSLRSEGAIFISELDKLTTLNICYNEIGDEGAKAISQMPNLTDLRIDGN-RIGPEGA 293

Query: 439 ELISGLTGLVSLNVSNSRITSAGLRHL 465
           + IS +  L  L++S +RI   G++++
Sbjct: 294 KSISEMKQLRLLDISFNRIGEEGVKYV 320



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 104/218 (47%), Gaps = 4/218 (1%)

Query: 253 SLKVLNLGFNEITDECLVHLKGLT-NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
           SLK +++   E+ D   + L GL  NL  L +    IG +G   ++    L  L +  +Q
Sbjct: 86  SLKFISV--EEVFDIKYLELVGLMRNLTKLCVGGNEIGLQGAKIVSEFKQLTSLYIDSSQ 143

Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
           +G+ G + +SG+T L  +++S   +     + ++G+  L  LN+ +  I   G+ +++ +
Sbjct: 144 IGTEGAKLISGMTKLTELDISANYLCAEGAKSISGMDHLTFLNISSSNIDQEGIKSISEM 203

Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
             LT LD+ G  +   GA  +   K L  L+     L   G   I +L  LT LN+  N 
Sbjct: 204 KNLTKLDICGNNLGAEGAKSISQMKQLTYLKAYTNSLRSEGAIFISELDKLTTLNICYN- 262

Query: 432 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
            + D+  + IS +  L  L +  +RI   G + ++  +
Sbjct: 263 EIGDEGAKAISQMPNLTDLRIDGNRIGPEGAKSISEMK 300


>gi|427793023|gb|JAA61963.1| Putative f-box and leucine-rich repeat protein 14a, partial
           [Rhipicephalus pulchellus]
          Length = 372

 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 149/312 (47%), Gaps = 53/312 (16%)

Query: 32  ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL--KDCSNLQSLDF 88
           +L +L L     + D  +  IA     L  +DL G +DVT++GL HL      NL+SL+ 
Sbjct: 82  SLTELNLSMCKQITDNSLGRIAQHLQGLERLDLGGCTDVTNTGL-HLIAWGLHNLRSLNL 140

Query: 89  NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
             C  +SD G+ HL G++         N+AI         G + L  L L+ C ++    
Sbjct: 141 RSCRGVSDPGISHLAGINP--------NSAI---------GTLRLESLCLQDCQKLTDDA 183

Query: 149 VNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQ 204
           +     GL  L SLN+ +C  +TD+ +K  + +  L+ L + SC  ++D G+AYL +G  
Sbjct: 184 LRFISIGLQDLRSLNLSFCASVTDAGLKHAARMARLRELNLRSCDNISDLGLAYLAEGGS 243

Query: 205 KLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
           +++ L++  C        L +   L  L  L+LN C +SDDG  + +             
Sbjct: 244 RISTLDVSFCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRVA------------- 290

Query: 263 EITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTG-LCNLKCLELSD-TQVGSSGLRH 319
                     + L +L++L+L  CG + D+GL  +   L  L+C++L   T++ + GL  
Sbjct: 291 ----------RSLGDLQTLHLGQCGRVTDKGLSLIADHLKQLRCIDLYGCTKITTVGLEK 340

Query: 320 LSGLTNLESINL 331
           L  L NL  +NL
Sbjct: 341 LMQLPNLGVLNL 352



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 154/303 (50%), Gaps = 24/303 (7%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFA-GLINL 133
           ++   NL+SL+   C  ++D  L H  ++ + +LT L+      IT   +   A  L  L
Sbjct: 50  IQGVPNLESLNMIGCFNLTDAWLNHAFVQDVHSLTELNLSMCKQITDNSLGRIAQHLQGL 109

Query: 134 VKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLK 183
            +LDL  CT +    ++L   GL  L SLN++ C  ++D  +  L+G+          L+
Sbjct: 110 ERLDLGGCTDVTNTGLHLIAWGLHNLRSLNLRSCRGVSDPGISHLAGINPNSAIGTLRLE 169

Query: 184 SLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-Q 239
           SL +  C K+TD  + ++  GLQ L  LNL  C  VT A L   + +  L  LNL  C  
Sbjct: 170 SLCLQDCQKLTDDALRFISIGLQDLRSLNLSFCASVTDAGLKHAARMARLRELNLRSCDN 229

Query: 240 LSDDGCEKFSKIGS-LKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNL 296
           +SD G    ++ GS +  L++ F +++ D+ L+H  +GL  L SL+L++C + D+G+  +
Sbjct: 230 ISDLGLAYLAEGGSRISTLDVSFCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRV 289

Query: 297 T-GLCNLKCLELSDT-QVGSSGLRHLSG-LTNLESINL-SFTGISDGSLRKLAGLSSLKS 352
              L +L+ L L    +V   GL  ++  L  L  I+L   T I+   L KL  L +L  
Sbjct: 290 ARSLGDLQTLHLGQCGRVTDKGLSLIADHLKQLRCIDLYGCTKITTVGLEKLMQLPNLGV 349

Query: 353 LNL 355
           LNL
Sbjct: 350 LNL 352



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 161/303 (53%), Gaps = 26/303 (8%)

Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKL 206
           ++G+  LESLN+  C  +TD+ +    +  + +L  L +S C ++TD+ +  + + LQ L
Sbjct: 50  IQGVPNLESLNMIGCFNLTDAWLNHAFVQDVHSLTELNLSMCKQITDNSLGRIAQHLQGL 109

Query: 207 TLLNLEGCP-VTAACLDSLS-ALGSLFYLNLNRCQ-LSDDGCEKF------SKIGSLKVL 257
             L+L GC  VT   L  ++  L +L  LNL  C+ +SD G          S IG+L++ 
Sbjct: 110 ERLDLGGCTDVTNTGLHLIAWGLHNLRSLNLRSCRGVSDPGISHLAGINPNSAIGTLRLE 169

Query: 258 NLGFNE---ITDECLVHLK-GLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQ 311
           +L   +   +TD+ L  +  GL +L SLNL  C  + D GL +   +  L+ L L S   
Sbjct: 170 SLCLQDCQKLTDDALRFISIGLQDLRSLNLSFCASVTDAGLKHAARMARLRELNLRSCDN 229

Query: 312 VGSSGLRHLS-GLTNLESINLSF-TGISD-GSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
           +   GL +L+ G + + ++++SF   + D G L    GL  L+SL+L+A  ++D G+  +
Sbjct: 230 ISDLGLAYLAEGGSRISTLDVSFCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRV 289

Query: 369 T-SLTGLTHLDLFG-ARITDSGAAYLRN-FKNLRSLEICG-GGLTDAGVKHIKDLSSLTL 424
             SL  L  L L    R+TD G + + +  K LR +++ G   +T  G++ +  L +L +
Sbjct: 290 ARSLGDLQTLHLGQCGRVTDKGLSLIADHLKQLRCIDLYGCTKITTVGLEKLMQLPNLGV 349

Query: 425 LNL 427
           LNL
Sbjct: 350 LNL 352



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 109/218 (50%), Gaps = 29/218 (13%)

Query: 272 LKGLTNLESLNLDSCGIGDEGLVN---------LTGLCNLKCLELSDTQVGSSGLRHLSG 322
           ++G+ NLESLN+  C    +  +N         LT L    C +++D  +G    +HL G
Sbjct: 50  IQGVPNLESLNMIGCFNLTDAWLNHAFVQDVHSLTELNLSMCKQITDNSLGRIA-QHLQG 108

Query: 323 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALT-----SLTGL 374
           L   E ++L   T +++  L  +A GL +L+SLNL + R ++D G++ L      S  G 
Sbjct: 109 L---ERLDLGGCTDVTNTGLHLIAWGLHNLRSLNLRSCRGVSDPGISHLAGINPNSAIGT 165

Query: 375 THLDLFG----ARITDSGAAYLR-NFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLS 428
             L+        ++TD    ++    ++LRSL +     +TDAG+KH   ++ L  LNL 
Sbjct: 166 LRLESLCLQDCQKLTDDALRFISIGLQDLRSLNLSFCASVTDAGLKHAARMARLRELNLR 225

Query: 429 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRH 464
              N++D  L  L  G + + +L+VS   ++   GL H
Sbjct: 226 SCDNISDLGLAYLAEGGSRISTLDVSFCDKVGDQGLLH 263


>gi|384251251|gb|EIE24729.1| RNI-like protein [Coccomyxa subellipsoidea C-169]
          Length = 498

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 113/371 (30%), Positives = 169/371 (45%), Gaps = 62/371 (16%)

Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTD---SGIAYL 200
            G  V L GL +LE L  K C+ ++      +  L +LK+  ++CS +++D   + IA L
Sbjct: 126 QGFPVMLTGLRQLELLACKGCSGLSSRPFAGIESLVSLKTCLLNCSLRMSDDTCADIASL 185

Query: 201 KGLQKLTLL--NLEGCPVTAAC-----LDSLSALGSLFYLNLN-RCQLSDDGCEKFSK-- 250
           + +Q L L    LEGC +T AC     L SL  +  L  L+L+    +SD    + ++  
Sbjct: 186 RQVQTLGLACSALEGC-LTPACITHAGLRSLCGMTQLTALDLSGHAAISDASMAEIARHL 244

Query: 251 -------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
                  +      N G   +TD  +  L  LT LES+ L    +G  G   L  L  L+
Sbjct: 245 TRLIDLDLRRPACDNPGAAVVTDAGIAALASLTLLESVRLSQAQVGQAGCAALASLPRLR 304

Query: 304 CLE------LSDTQVGS-SGLRHLS--------------------GLTNLESINLS--FT 334
           CLE      LSDT V   + LRHLS                    G+  L  ++LS    
Sbjct: 305 CLELSYCDSLSDTPVCELTRLRHLSELSLAGCASVTDIAVTALVRGMPELMRLDLSACHM 364

Query: 335 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS---LTGLTHLDLFG-ARITDSGA 389
            + D SL  +A L +L+ L L +  +++D G+  L S      LTHLD+ G  RI+D+GA
Sbjct: 365 HVGDISLYAIATLPNLQVLRLHSCERVSDMGIGGLCSGAAAAALTHLDVRGCERISDAGA 424

Query: 390 AYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
             + R  K L+  SLE C   + D G++ +  L  L +L +      TD   +  +    
Sbjct: 425 TSIGRCLKQLQYLSLEHC-HLIGDRGIRTLSGLPHLEILRVGGTGATTDSFAQDFTRRVR 483

Query: 447 LVSLNVSNSRI 457
           L S   SN+RI
Sbjct: 484 LES--PSNTRI 492



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 104/230 (45%), Gaps = 35/230 (15%)

Query: 42  PG---VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG 98
           PG   V D  +  +AS  + L SV LS + V  +G   L     L+ L+ ++C  +SD  
Sbjct: 260 PGAAVVTDAGIAALASL-TLLESVRLSQAQVGQAGCAALASLPRLRCLELSYCDSLSDTP 318

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNLKGLMKL 157
           +  L  L +L+ LS     ++T   + A   G+  L++LDL  C  +H G          
Sbjct: 319 VCELTRLRHLSELSLAGCASVTDIAVTALVRGMPELMRLDLSAC-HMHVG---------- 367

Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL---KGLQKLTLLNLEG 213
                       D  +  ++ L NL+ L++ SC +V+D GI  L        LT L++ G
Sbjct: 368 ------------DISLYAIATLPNLQVLRLHSCERVSDMGIGGLCSGAAAAALTHLDVRG 415

Query: 214 CP-VTAACLDSL-SALGSLFYLNLNRCQL-SDDGCEKFSKIGSLKVLNLG 260
           C  ++ A   S+   L  L YL+L  C L  D G    S +  L++L +G
Sbjct: 416 CERISDAGATSIGRCLKQLQYLSLEHCHLIGDRGIRTLSGLPHLEILRVG 465


>gi|112961787|gb|ABI28544.1| internalin A [Listeria monocytogenes]
          Length = 696

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 122/386 (31%), Positives = 178/386 (46%), Gaps = 60/386 (15%)

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
            S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN IT   
Sbjct: 1   FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT--D 52

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
           +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ LT L+
Sbjct: 53  IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLE 106

Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQL 240
            L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+LN  QL
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQL 159

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
            D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  L GL 
Sbjct: 160 KDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLT 213

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------------- 343
            L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K             
Sbjct: 214 ALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 271

Query: 344 ---LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------ 394
              LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N      
Sbjct: 272 VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNT 329

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLS 420
            KN+    I    ++D G     D++
Sbjct: 330 VKNVTGALIAPATISDGGSYAEPDIT 355



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 106/210 (50%), Gaps = 22/210 (10%)

Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
           N+I D  +  L  LTNL  L L +  I D  +  L  L NL  LELS   +  S +  LS
Sbjct: 26  NQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALS 79

Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
           GLTNL+   LSF G     L+ LA L++L+ L++ + +++D  ++ L  LT L  L    
Sbjct: 80  GLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATN 134

Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
            +I+D     L    NL  L + G  L D G   +  L++LT L+L+ N       L  +
Sbjct: 135 NQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPL 187

Query: 442 SGLTGLVSLNVSNSRITS----AGLRHLNH 467
           SGLT L  L +  ++I++    AGL  L +
Sbjct: 188 SGLTKLTELKLGANQISNISPLAGLTALTN 217


>gi|112961784|gb|ABI28542.1| internalin A [Listeria monocytogenes]
 gi|112961796|gb|ABI28550.1| internalin A [Listeria monocytogenes]
          Length = 696

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 122/386 (31%), Positives = 178/386 (46%), Gaps = 60/386 (15%)

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
            S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN IT   
Sbjct: 1   FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT--D 52

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
           +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ LT L+
Sbjct: 53  IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLE 106

Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQL 240
            L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+LN  QL
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQL 159

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
            D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  L GL 
Sbjct: 160 KDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLT 213

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------------- 343
            L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K             
Sbjct: 214 ALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 271

Query: 344 ---LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------ 394
              LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N      
Sbjct: 272 VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNT 329

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLS 420
            KN+    I    ++D G     D++
Sbjct: 330 VKNVTGALIAPATISDGGSYAEPDIT 355



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 106/210 (50%), Gaps = 22/210 (10%)

Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
           N+I D  +  L  LTNL  L L +  I D  +  L  L NL  LELS   +  S +  LS
Sbjct: 26  NQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALS 79

Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
           GLTNL+   LSF G     L+ LA L++L+ L++ + +++D  ++ L  LT L  L    
Sbjct: 80  GLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATN 134

Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
            +I+D     L    NL  L + G  L D G   +  L++LT L+L+ N       L  +
Sbjct: 135 NQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPL 187

Query: 442 SGLTGLVSLNVSNSRITS----AGLRHLNH 467
           SGLT L  L +  ++I++    AGL  L +
Sbjct: 188 SGLTKLTELKLGANQISNISPLAGLTALTN 217


>gi|112961778|gb|ABI28538.1| internalin A [Listeria monocytogenes]
          Length = 696

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 122/386 (31%), Positives = 178/386 (46%), Gaps = 60/386 (15%)

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
            S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN IT   
Sbjct: 1   FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT--D 52

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
           +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ LT L+
Sbjct: 53  IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLE 106

Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQL 240
            L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+LN  QL
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQL 159

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
            D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  L GL 
Sbjct: 160 KDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLT 213

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------------- 343
            L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K             
Sbjct: 214 ALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 271

Query: 344 ---LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------ 394
              LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N      
Sbjct: 272 VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNT 329

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLS 420
            KN+    I    ++D G     D++
Sbjct: 330 VKNVTGALIAPATISDGGSYAEPDIT 355



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 106/210 (50%), Gaps = 22/210 (10%)

Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
           N+I D  +  L  LTNL  L L +  I D  +  L  L NL  LELS   +  S +  LS
Sbjct: 26  NQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALS 79

Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
           GLTNL+   LSF G     L+ LA L++L+ L++ + +++D  ++ L  LT L  L    
Sbjct: 80  GLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATN 134

Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
            +I+D     L    NL  L + G  L D G   +  L++LT L+L+ N       L  +
Sbjct: 135 NQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPL 187

Query: 442 SGLTGLVSLNVSNSRITS----AGLRHLNH 467
           SGLT L  L +  ++I++    AGL  L +
Sbjct: 188 SGLTKLTELKLGANQISNISPLAGLTALTN 217


>gi|421897504|ref|ZP_16327872.1| type III effector protein gala5 [Ralstonia solanacearum MolK2]
 gi|206588710|emb|CAQ35673.1| type III effector protein gala5 [Ralstonia solanacearum MolK2]
          Length = 533

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 132/282 (46%), Gaps = 1/282 (0%)

Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
           +L  S + V   G+  L   + LT L+L    +  A    L A   L  LN+NR ++   
Sbjct: 216 TLNASRNGVGGEGVRALVDCKTLTSLDLSENGLGDAEAQRLGASERLTTLNVNRNRIDVQ 275

Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
           G    +   +L  L++G N I D  +  L     L +LN++  G+G  G+  L     L 
Sbjct: 276 GARALADCKTLTSLDIGGNSIGDAGVEALLANAQLTTLNVERAGVGAHGVQALADSKTLT 335

Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
            L + +  +G  G + L+  T+L +++    GI     + LA  + L +LNL    I D 
Sbjct: 336 SLRIDNNNIGDEGAKTLAASTSLTTLHSESNGIGLAGAKALAANTRLTTLNLGHNGIGDA 395

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
           G  A  + T L  L +    ++D+GA  L   K L +L+     + DAG + +    +LT
Sbjct: 396 GAQAWLANTTLVSLSVRRNGLSDAGATRLAASKTLTTLDAGDNAIKDAGARALAANRTLT 455

Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
            L++S N  + +     ++  T L SL++ N+R+  AG+R L
Sbjct: 456 TLDVSSN-EIGNAGARALAANTRLASLDLRNNRMLEAGVRAL 496



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 125/266 (46%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N + D++ + L     L +L ++ +++   G   L   + LT L++ G  +  A +++L 
Sbjct: 246 NGLGDAEAQRLGASERLTTLNVNRNRIDVQGARALADCKTLTSLDIGGNSIGDAGVEALL 305

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
           A   L  LN+ R  +   G +  +   +L  L +  N I DE    L   T+L +L+ +S
Sbjct: 306 ANAQLTTLNVERAGVGAHGVQALADSKTLTSLRIDNNNIGDEGAKTLAASTSLTTLHSES 365

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
            GIG  G   L     L  L L    +G +G +     T L S+++   G+SD    +LA
Sbjct: 366 NGIGLAGAKALAANTRLTTLNLGHNGIGDAGAQAWLANTTLVSLSVRRNGLSDAGATRLA 425

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
              +L +L+     I D G  AL +   LT LD+    I ++GA  L     L SL++  
Sbjct: 426 ASKTLTTLDAGDNAIKDAGARALAANRTLTTLDVSSNEIGNAGARALAANTRLASLDLRN 485

Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNC 431
             + +AGV+ +    +L+ L +S NC
Sbjct: 486 NRMLEAGVRALLVNRTLSSLGVSFNC 511



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 115/294 (39%), Gaps = 55/294 (18%)

Query: 44  VNDKWMDVIASQG----SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL 99
           VN   +DV  ++      +L S+D+ G+                          I D G+
Sbjct: 267 VNRNRIDVQGARALADCKTLTSLDIGGNS-------------------------IGDAGV 301

Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
           E L   + LT+L+  R   + A G++A A    L  L ++                    
Sbjct: 302 EALLANAQLTTLNVER-AGVGAHGVQALADSKTLTSLRIDN------------------- 341

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
                 N I D   K L+  T+L +L    + +  +G   L    +LT LNL    +  A
Sbjct: 342 ------NNIGDEGAKTLAASTSLTTLHSESNGIGLAGAKALAANTRLTTLNLGHNGIGDA 395

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
              +  A  +L  L++ R  LSD G  + +   +L  L+ G N I D     L     L 
Sbjct: 396 GAQAWLANTTLVSLSVRRNGLSDAGATRLAASKTLTTLDAGDNAIKDAGARALAANRTLT 455

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
           +L++ S  IG+ G   L     L  L+L + ++  +G+R L     L S+ +SF
Sbjct: 456 TLDVSSNEIGNAGARALAANTRLASLDLRNNRMLEAGVRALLVNRTLSSLGVSF 509


>gi|290993931|ref|XP_002679586.1| hypothetical protein NAEGRDRAFT_47566 [Naegleria gruberi]
 gi|284093203|gb|EFC46842.1| hypothetical protein NAEGRDRAFT_47566 [Naegleria gruberi]
          Length = 675

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 98/312 (31%), Positives = 154/312 (49%), Gaps = 42/312 (13%)

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLN 210
           GL  L +LN++ C+ ITD+ +K L+ ++ NL  L +  C+KV DS ++Y+    +L  L+
Sbjct: 337 GLQTLHTLNVQGCHYITDNGVKYLTYISQNLTHLNLRGCTKVNDSAMSYISQFSQLNYLD 396

Query: 211 LEGCP-VTAACLDSLSALG---SLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
           + GC  VT   +  LS       L YL+L  C Q++D+G    S++  L+ L L      
Sbjct: 397 MTGCVNVTDLGVKHLSQSACKTKLKYLDLTFCHQVTDEGVRYLSEMTELEDLTL------ 450

Query: 266 DECLVHL--KGLT-------NLESLNLDSC------GIGDEGLVNLTGLCNLKCLELSDT 310
            +C  H+  KGLT       N+  LNL  C      G+    L  L  L  + C   SD 
Sbjct: 451 -QCCRHITAKGLTQLVNSCQNIRVLNLTGCHLLEISGVRSGSLPKLEKLSMMGCKLTSD- 508

Query: 311 QVGSSGLRHLSGLT-NLESINLSFTG-ISDGSL-RKLAGLSSLKSLNLDA-RQITDTGLA 366
               + LR +S  T NL+ + LSF+  I+DG + R +    +L  LNL     ITD  L 
Sbjct: 509 ----NCLRVISDWTCNLKELVLSFSDMITDGGIERVIINSKNLSHLNLKKCSNITDKSLE 564

Query: 367 ALTSLTG--LTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSL 422
            ++      + +L+L G R  T+ G  YL N  +L+   I     + + G+ H+    SL
Sbjct: 565 CISKHLSNVVEYLNLTGVRGFTNGGLKYLENCTSLKEFVIQRCIHVNNEGLAHLAYCPSL 624

Query: 423 TLLNLSQNCNLT 434
            +L++S+N  +T
Sbjct: 625 EILDISENTLIT 636



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 137/278 (49%), Gaps = 36/278 (12%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDC---SNLQSLDFNFCIQISDGGL 99
           VND  M  I SQ S L  +D++G  +VTD G+ HL      + L+ LD  FC Q++D G+
Sbjct: 378 VNDSAMSYI-SQFSQLNYLDMTGCVNVTDLGVKHLSQSACKTKLKYLDLTFCHQVTDEGV 436

Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
            +L  ++ L  L+ +    ITA+G+        N+  L+L  C  +    V    L KLE
Sbjct: 437 RYLSEMTELEDLTLQCCRHITAKGLTQLVNSCQNIRVLNLTGCHLLEISGVRSGSLPKLE 496

Query: 159 SLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPV 216
            L++  C   +D+ ++ +S  T NLK L +S S  +TD GI       +  ++N +    
Sbjct: 497 KLSMMGCKLTSDNCLRVISDWTCNLKELVLSFSDMITDGGI-------ERVIINSKN--- 546

Query: 217 TAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGS--LKVLNL-GFNEITDECLVHL 272
                        L +LNL +C  ++D   E  SK  S  ++ LNL G    T+  L +L
Sbjct: 547 -------------LSHLNLKKCSNITDKSLECISKHLSNVVEYLNLTGVRGFTNGGLKYL 593

Query: 273 KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD 309
           +  T+L+   +  C  + +EGL +L    +L+ L++S+
Sbjct: 594 ENCTSLKEFVIQRCIHVNNEGLAHLAYCPSLEILDISE 631


>gi|112961781|gb|ABI28540.1| internalin A [Listeria monocytogenes]
          Length = 696

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 122/386 (31%), Positives = 178/386 (46%), Gaps = 60/386 (15%)

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
            S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN IT   
Sbjct: 1   FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT--D 52

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
           +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ LT L+
Sbjct: 53  IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLE 106

Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQL 240
            L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+LN  QL
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQL 159

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
            D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  L GL 
Sbjct: 160 KDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLT 213

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------------- 343
            L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K             
Sbjct: 214 ALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 271

Query: 344 ---LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------ 394
              LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N      
Sbjct: 272 VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNT 329

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLS 420
            KN+    I    ++D G     D++
Sbjct: 330 VKNVTGALIAPATISDGGSYAEPDIT 355



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 106/210 (50%), Gaps = 22/210 (10%)

Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
           N+I D  +  L  LTNL  L L +  I D  +  L  L NL  LELS   +  S +  LS
Sbjct: 26  NQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALS 79

Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
           GLTNL+   LSF G     L+ LA L++L+ L++ + +++D  ++ L  LT L  L    
Sbjct: 80  GLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATN 134

Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
            +I+D     L    NL  L + G  L D G   +  L++LT L+L+ N       L  +
Sbjct: 135 NQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPL 187

Query: 442 SGLTGLVSLNVSNSRITS----AGLRHLNH 467
           SGLT L  L +  ++I++    AGL  L +
Sbjct: 188 SGLTKLTELKLGANQISNISPLAGLTALTN 217


>gi|428304096|ref|YP_007140921.1| hypothetical protein Cri9333_0441 [Crinalium epipsammum PCC 9333]
 gi|428245631|gb|AFZ11411.1| leucine-rich repeat-containing protein [Crinalium epipsammum PCC
           9333]
          Length = 504

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 84/237 (35%), Positives = 134/237 (56%), Gaps = 21/237 (8%)

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
           ++ L  L +LN+ + N I  SD+KPL  LT L +L++  +K++D  +  L GL  L  L+
Sbjct: 87  IQALRNLTTLNL-FANQI--SDVKPLRSLTKLTTLELVSNKISD--VKPLFGLTNLNRLD 141

Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
           L    ++   +  L+ L  L  L+L+  ++SD   E    + +L VL+L  N+++D  L 
Sbjct: 142 LSDNKISD--VKPLTGLTKLTELDLSDNKISD--VEPLFGLTNLGVLDLSRNKLSD--LK 195

Query: 271 HLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
            L GLT L  L L++  I D + L NLT L     L+LSD ++  S ++ L+GLT L  +
Sbjct: 196 PLWGLTKLTMLLLNTNQISDLKPLANLTKLT---TLDLSDNKI--SDVKPLTGLTKLTEL 250

Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
            L    ISD  L+ L GL++L  L L+  +I+D  + +LT LT +T L L G +I++
Sbjct: 251 ALGDNKISD--LKPLLGLTNLTELVLNTNEISD--VTSLTGLTNITSLHLGGNKISN 303



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/262 (33%), Positives = 127/262 (48%), Gaps = 30/262 (11%)

Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
           LQ +  LN+    +T+  L+ + AL +L  LNL   Q+SD   +    +  L  L L  N
Sbjct: 68  LQGVKNLNISNAEITS--LEGIQALRNLTTLNLFANQISD--VKPLRSLTKLTTLELVSN 123

Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
           +I+D  +  L GLTNL  L+L    I D  +  LTGL  L  L+LSD ++  S +  L G
Sbjct: 124 KISD--VKPLFGLTNLNRLDLSDNKISD--VKPLTGLTKLTELDLSDNKI--SDVEPLFG 177

Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
           LTNL  ++LS   +SD  L+ L GL+ L  L L+  QI+D  L  L +LT LT LDL   
Sbjct: 178 LTNLGVLDLSRNKLSD--LKPLWGLTKLTMLLLNTNQISD--LKPLANLTKLTTLDLSDN 233

Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDA--------------GVKHIKDLSSLTLLNLS 428
           +I+D     L     L  L +    ++D                   I D++SLT L   
Sbjct: 234 KISDVKP--LTGLTKLTELALGDNKISDLKPLLGLTNLTELVLNTNEISDVTSLTGLTNI 291

Query: 429 QNCNLTDKTLELISGLTGLVSL 450
            + +L    +  ++ LTGL  L
Sbjct: 292 TSLHLGGNKISNVTSLTGLTKL 313



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 102/203 (50%), Gaps = 19/203 (9%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           +NL  LD +   +ISD  ++ L GL+ LT L    N       ++   GL NL  LDL R
Sbjct: 135 TNLNRLDLSDN-KISD--VKPLTGLTKLTELDLSDNKI---SDVEPLFGLTNLGVLDLSR 188

Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
                  L +LK L  L  L +   N    SD+KPL+ LT L +L +S +K++D  +  L
Sbjct: 189 -----NKLSDLKPLWGLTKLTMLLLNTNQISDLKPLANLTKLTTLDLSDNKISD--VKPL 241

Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
            GL KLT L L    ++   L  L  L +L  L LN  ++SD      + + ++  L+LG
Sbjct: 242 TGLTKLTELALGDNKISD--LKPLLGLTNLTELVLNTNEISD--VTSLTGLTNITSLHLG 297

Query: 261 FNEITDECLVHLKGLTNLESLNL 283
            N+I++  +  L GLT L  L L
Sbjct: 298 GNKISN--VTSLTGLTKLAWLYL 318



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 75/139 (53%), Gaps = 14/139 (10%)

Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
           L G+ NL   N   T     SL  +  L +L +LNL A QI+D  +  L SLT LT L+L
Sbjct: 68  LQGVKNLNISNAEIT-----SLEGIQALRNLTTLNLFANQISD--VKPLRSLTKLTTLEL 120

Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
              +I+D    +     NL  L++    ++D  VK +  L+ LT L+LS N  ++D  +E
Sbjct: 121 VSNKISDVKPLF--GLTNLNRLDLSDNKISD--VKPLTGLTKLTELDLSDN-KISD--VE 173

Query: 440 LISGLTGLVSLNVSNSRIT 458
            + GLT L  L++S ++++
Sbjct: 174 PLFGLTNLGVLDLSRNKLS 192


>gi|223698886|gb|ACN19164.1| internalin A [Listeria monocytogenes]
          Length = 715

 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 181/391 (46%), Gaps = 60/391 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI  G +  L  L+NLT L+   NN 
Sbjct: 15  LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QI--GDITPLANLTNLTGLTLF-NNQ 68

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 69  IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 120

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 121 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 173

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 174 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 227

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 228 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 285

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 286 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 343

Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
                 KN+    I    ++D G     D++
Sbjct: 344 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 374



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 119/247 (48%), Gaps = 43/247 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  IGD  +  L  L NL
Sbjct: 7   DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIGD--ITPLANLTNL 59

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 60  TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 227

Query: 460 -AGLRHL 465
            AGL  L
Sbjct: 228 LAGLTAL 234


>gi|430743420|ref|YP_007202549.1| hypothetical protein Sinac_2547 [Singulisphaera acidiphila DSM
           18658]
 gi|430015140|gb|AGA26854.1| hypothetical protein Sinac_2547 [Singulisphaera acidiphila DSM
           18658]
          Length = 356

 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 118/229 (51%), Gaps = 5/229 (2%)

Query: 169 TDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSA 226
           T++ M  +  L+ L+ L  +  SK+T++G+ +L+ L +L +++L   P VT   L  L+ 
Sbjct: 121 TNATMSHVGRLSQLEELDATGGSKLTNAGLVHLQSLTRLRMVDLSLLPGVTGKGLIHLAE 180

Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 285
           L SL  LNL+      D            +   G  N ITDE L +LKGLT L  L L +
Sbjct: 181 LTSLERLNLSSPVADADLVNLSRLTNLRLLRLNGGGNGITDEGLANLKGLTELRELILRN 240

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
             +   GL  L G+  +  L+L ++ + +  L  L  +T L+S+ +  + + D  L+ + 
Sbjct: 241 SQVTGTGLTALQGMIAMADLKLINSHLET--LEPLQRMTGLKSLWIHRSPLDDRGLKHVE 298

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            L SL+ L+L+  +ITD GL +L  L GL  +D  G  +T  G+A  + 
Sbjct: 299 NLKSLQYLSLEDTRITDDGLKSLLDLRGLREVDARGTGVTIMGSATFQQ 347



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 117/240 (48%), Gaps = 35/240 (14%)

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG---IGDEGLVNLTGLCNLKCLEL 307
            GS+K  +LG ++ T+  + H+  L+ LE   LD+ G   + + GLV+L  L  L+ ++L
Sbjct: 108 FGSVKQASLG-SQATNATMSHVGRLSQLE--ELDATGGSKLTNAGLVHLQSLTRLRMVDL 164

Query: 308 SD-TQVGSSGLRHLSGLTNLESINLSFT-------------------------GISDGSL 341
           S    V   GL HL+ LT+LE +NLS                           GI+D  L
Sbjct: 165 SLLPGVTGKGLIHLAELTSLERLNLSSPVADADLVNLSRLTNLRLLRLNGGGNGITDEGL 224

Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
             L GL+ L+ L L   Q+T TGL AL  +  +  L L  + +       L+    L+SL
Sbjct: 225 ANLKGLTELRELILRNSQVTGTGLTALQGMIAMADLKLINSHLET--LEPLQRMTGLKSL 282

Query: 402 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
            I    L D G+KH+++L SL  L+L ++  +TD  L+ +  L GL  ++   + +T  G
Sbjct: 283 WIHRSPLDDRGLKHVENLKSLQYLSL-EDTRITDDGLKSLLDLRGLREVDARGTGVTIMG 341



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 111/244 (45%), Gaps = 33/244 (13%)

Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSL 254
           G  Y   +++ +L    G   T A +  +  L  L  L+     +L++ G      +  L
Sbjct: 104 GPDYFGSVKQASL----GSQATNATMSHVGRLSQLEELDATGGSKLTNAGLVHLQSLTRL 159

Query: 255 KVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-------------------------GI 288
           ++++L     +T + L+HL  LT+LE LNL S                          GI
Sbjct: 160 RMVDLSLLPGVTGKGLIHLAELTSLERLNLSSPVADADLVNLSRLTNLRLLRLNGGGNGI 219

Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
            DEGL NL GL  L+ L L ++QV  +GL  L G+  +  + L  + +   +L  L  ++
Sbjct: 220 TDEGLANLKGLTELRELILRNSQVTGTGLTALQGMIAMADLKLINSHLE--TLEPLQRMT 277

Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
            LKSL +    + D GL  + +L  L +L L   RITD G   L + + LR ++  G G+
Sbjct: 278 GLKSLWIHRSPLDDRGLKHVENLKSLQYLSLEDTRITDDGLKSLLDLRGLREVDARGTGV 337

Query: 409 TDAG 412
           T  G
Sbjct: 338 TIMG 341



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 104/223 (46%), Gaps = 27/223 (12%)

Query: 66  GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
           GS +T++GL+HL+  + L+ +D +    ++  GL HL  L++L  L+             
Sbjct: 142 GSKLTNAGLVHLQSLTRLRMVDLSLLPGVTGKGLIHLAELTSLERLNL--------SSPV 193

Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
           A A L+NL +L   R  R++GG                  N ITD  +  L GLT L+ L
Sbjct: 194 ADADLVNLSRLTNLRLLRLNGG-----------------GNGITDEGLANLKGLTELREL 236

Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
            +  S+VT +G+  L+G+  +  L L    +    L+ L  +  L  L ++R  L D G 
Sbjct: 237 ILRNSQVTGTGLTALQGMIAMADLKLINSHL--ETLEPLQRMTGLKSLWIHRSPLDDRGL 294

Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
           +    + SL+ L+L    ITD+ L  L  L  L  ++    G+
Sbjct: 295 KHVENLKSLQYLSLEDTRITDDGLKSLLDLRGLREVDARGTGV 337



 Score = 38.5 bits (88), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 26/130 (20%)

Query: 359 QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 416
           Q T+  ++ +  L+ L  LD  G +++T++G  +L++   LR +++    G+T  G+ H+
Sbjct: 119 QATNATMSHVGRLSQLEELDATGGSKLTNAGLVHLQSLTRLRMVDLSLLPGVTGKGLIHL 178

Query: 417 KDLSSLTLLNLSQNC------------------------NLTDKTLELISGLTGLVSLNV 452
            +L+SL  LNLS                            +TD+ L  + GLT L  L +
Sbjct: 179 AELTSLERLNLSSPVADADLVNLSRLTNLRLLRLNGGGNGITDEGLANLKGLTELRELIL 238

Query: 453 SNSRITSAGL 462
            NS++T  GL
Sbjct: 239 RNSQVTGTGL 248


>gi|334116578|ref|ZP_08490670.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
           FGP-2]
 gi|333461398|gb|EGK90003.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
           FGP-2]
          Length = 576

 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/195 (35%), Positives = 110/195 (56%), Gaps = 14/195 (7%)

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           +DD  E    + S+  L L ++ ITD  +  L+ LTNL +LN ++  I D  + +L  L 
Sbjct: 42  TDDAQEAEQILSSMTELALSYDHITD--ISFLRWLTNLTTLNFENNKITD--ISSLGSLT 97

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
           NL  L LS  Q+  + +  L  LTNL +++LS+  I D S   L  L++L  LNL+   I
Sbjct: 98  NLTRLNLSYNQI--TDISFLGSLTNLTTLDLSYNRIIDIS--SLGSLTNLTRLNLNINTI 153

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD  +++L SLT LT LDL   +ITD  +  L +  NL  L++    +TD  +  ++ L+
Sbjct: 154 TD--ISSLGSLTNLTRLDLLSNQITDLSS--LGSLTNLTRLDLSSNPITD--INALRKLT 207

Query: 421 SLTLLNLSQNCNLTD 435
           +LT+L++  N  +T+
Sbjct: 208 NLTILDILSNTRITN 222


>gi|259489824|ref|NP_001159243.1| uncharacterized protein LOC100304332 [Zea mays]
 gi|223942967|gb|ACN25567.1| unknown [Zea mays]
 gi|413920256|gb|AFW60188.1| hypothetical protein ZEAMMB73_234209 [Zea mays]
          Length = 648

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 118/441 (26%), Positives = 210/441 (47%), Gaps = 53/441 (12%)

Query: 11  FNELVYSRCL--TEVSLE--AFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
             +LV  +CL  T+V L   A     LQ L L     ++D  +D++A +   L S+D+S 
Sbjct: 147 LRDLVMDKCLGVTDVGLAKVAVGCPGLQSLSLKWCREISDIGVDLLAKKCPQLRSLDISY 206

Query: 67  SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
             VT+  L  L     L+ +    C+ + D GL+ L   S+L S+   R + +++ G+ +
Sbjct: 207 LKVTNESLRSLSTLEKLEDIAMVSCLFVDDDGLQMLSMCSSLQSIDVARCHHVSSLGLAS 266

Query: 127 FA-GLINLVKL-------DLERCT--------------RIHGGLV---NLKGL----MKL 157
              G  +L K+       ++E C               R+ G  +   NL+ +      L
Sbjct: 267 LMDGQRSLRKINVAHSLHEIEACVLSKLSTIGETLTVLRLDGLEIFASNLQAIGSTCKNL 326

Query: 158 ESLNIKWCNCITDSDMKPL-SGLTNLKSLQISCSK-VTDSGIAYL-KGLQKLTLLNLEGC 214
             + +  CN +TD  +  L +   +L+++ ++C   +T++ +A + +  +K+  L LE C
Sbjct: 327 VEIGLSKCNGVTDDGIVSLVARCRDLRTIDVTCCHLLTNAALAAIAENCRKIECLRLESC 386

Query: 215 P-VTAACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVH 271
           P V+   L+S++ L S L  ++L  C+++D   ++ +    L +L LG  + I+DE LV+
Sbjct: 387 PFVSEKGLESIATLCSDLKEIDLTDCRINDAALQQLASCSELLILKLGLCSSISDEGLVY 446

Query: 272 LKG-LTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLELSD-TQVGSSGLRHLSGLTNLE 327
           +      L  L+L  C  + D+GL  +   C  ++ L L   TQ+   GL+H+ GL  L 
Sbjct: 447 ISANCGKLVELDLYRCSAVTDDGLAAVASGCKKMRMLNLCYCTQITDGGLKHVGGLEELA 506

Query: 328 SINL----SFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLT-GLTHLDLFG 381
           ++ L      TG+   S+    G SSL  L+L     + D GL AL+  +  L  L +  
Sbjct: 507 NLELRCLVRVTGVGITSIA--VGCSSLVELDLKRCYSVDDAGLWALSRYSQNLRQLTVSY 564

Query: 382 ARITDSGAAYLRNFKNLRSLE 402
            ++T  G  +L    +LR L+
Sbjct: 565 CQVTGLGLCHL--LGSLRCLQ 583



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 121/451 (26%), Positives = 207/451 (45%), Gaps = 56/451 (12%)

Query: 38  LGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT-DSGLIHLKDCSNLQSLDFNFCIQISD 96
           L +  GV  + +D + +   SL +VDLS      D  +  L   + L+ L  + C+ ++D
Sbjct: 101 LARASGVGWRGLDALVAACPSLEAVDLSHCVAAGDREMAALAAAAGLRDLVMDKCLGVTD 160

Query: 97  GGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRIHGGLVNLKGL 154
            GL  +  G   L SLS +    I+  G+   A     L  LD+      +  L +L  L
Sbjct: 161 VGLAKVAVGCPGLQSLSLKWCREISDIGVDLLAKKCPQLRSLDISYLKVTNESLRSLSTL 220

Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLE 212
            KLE + +  C  + D  ++ LS  ++L+S+ ++ C  V+  G+A L  G + L  +N+ 
Sbjct: 221 EKLEDIAMVSCLFVDDDGLQMLSMCSSLQSIDVARCHHVSSLGLASLMDGQRSLRKINVA 280

Query: 213 GC--PVTAACLDSLSALG-SLFYLNLNRCQLSDDGCEKFS----KIGSL--KVLNLGF-- 261
                + A  L  LS +G +L  L L       DG E F+     IGS    ++ +G   
Sbjct: 281 HSLHEIEACVLSKLSTIGETLTVLRL-------DGLEIFASNLQAIGSTCKNLVEIGLSK 333

Query: 262 -NEITDECLVHLKG-LTNLESLNLDSCGI-GDEGLVNLTGLC-NLKCLELSDTQ-VGSSG 316
            N +TD+ +V L     +L ++++  C +  +  L  +   C  ++CL L     V   G
Sbjct: 334 CNGVTDDGIVSLVARCRDLRTIDVTCCHLLTNAALAAIAENCRKIECLRLESCPFVSEKG 393

Query: 317 LRHLSGL-TNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTG- 373
           L  ++ L ++L+ I+L+   I+D +L++LA  S L  L L     I+D GL  +++  G 
Sbjct: 394 LESIATLCSDLKEIDLTDCRINDAALQQLASCSELLILKLGLCSSISDEGLVYISANCGK 453

Query: 374 LTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
           L  LDL+  + +TD G A + +                 G K ++      +LNL     
Sbjct: 454 LVELDLYRCSAVTDDGLAAVAS-----------------GCKKMR------MLNLCYCTQ 490

Query: 433 LTDKTLELISGLTGLVSLNVSN-SRITSAGL 462
           +TD  L+ + GL  L +L +    R+T  G+
Sbjct: 491 ITDGGLKHVGGLEELANLELRCLVRVTGVGI 521


>gi|150371858|dbj|BAF65718.1| internalin A [Listeria monocytogenes]
          Length = 800

 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 123/395 (31%), Positives = 185/395 (46%), Gaps = 56/395 (14%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL+ L+ L+    N +TD  +KPL+ 
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLISLQQLSF--GNQVTD--LKPLAN 205

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G      + +L  L+L  N+I++  L  L GLT L  L L +  I +  +  
Sbjct: 259 NGNQLKDIGT--LGSLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
                   LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  N 
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428

Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
               +++   G L       I+D  S T  +++ N
Sbjct: 429 SIPNTVKNVTGALIAPAT--IRDGGSYTEPDITWN 461



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 118/249 (47%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 92  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + L  L  LTNL  + LS   ISD  +  L+GL SL+ L+    Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLISLQQLSF-GNQVTD 199

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 258 LNGNQLKDIGT--LGSLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 312

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 313 LAGLTALTN 321



 Score = 39.3 bits (90), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 41/139 (29%)

Query: 316 GLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSL 371
           G++ + G   L NL  IN S   ++D  +  L  L+ L  + ++  QI D T LA LT+L
Sbjct: 87  GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNL 144

Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
           TGLT   LF  +ITD     L+N  NL  LE+    ++D                     
Sbjct: 145 TGLT---LFNNQITDLDP--LKNLTNLNRLELSSNTISD--------------------- 178

Query: 432 NLTDKTLELISGLTGLVSL 450
                    IS L+GL+SL
Sbjct: 179 ---------ISALSGLISL 188


>gi|157866007|ref|XP_001681710.1| putative surface antigen protein [Leishmania major strain Friedlin]
 gi|68125008|emb|CAJ02922.1| putative surface antigen protein [Leishmania major strain Friedlin]
          Length = 760

 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 120/253 (47%), Gaps = 1/253 (0%)

Query: 176 LSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
            S +T+L  L+I +   +T +  A    ++ L  LNLEG  V+       S + SL  L 
Sbjct: 201 WSRVTSLLELEIVAAGDITGTLPAKWSSIKSLRTLNLEGTQVSGTLPSGWSEMKSLTSLE 260

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           L   Q+S      +S I SL+ LNL   +++         + +L +LNL+   +      
Sbjct: 261 LEGTQVSGTLPPGWSSIKSLRTLNLEGTQVSGSLPPQWVSMASLRTLNLEGTQVSGTLPP 320

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
             + + +L  LEL  TQV  +     S + +L ++NL  T +S     +   ++SL++LN
Sbjct: 321 GWSEMKSLTSLELEGTQVSGTLPLGWSEMKSLRTLNLEGTQVSGSLPPQWVSMASLRTLN 380

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
           L+  Q++ T     + +  LT+L L G +++ S     R  K+L +L + G  ++ +   
Sbjct: 381 LEGTQVSGTLPPGWSEMKSLTNLYLEGTQLSGSLPTEWRGIKSLTNLYLKGTQVSGSLPP 440

Query: 415 HIKDLSSLTLLNL 427
               L+SL  L+L
Sbjct: 441 QWSSLTSLRTLDL 453



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 170/392 (43%), Gaps = 22/392 (5%)

Query: 6   ISQQIF---NELVYSRCLTEVSLEA-FRDCALQDLCLGQYP----GVNDKWMDVIASQGS 57
           +S  +F   N   Y+  L E+ +   +R   ++DL     P     + D W     S+  
Sbjct: 78  VSVDVFVGLNVSTYAGTLPEIPVNVDYRHVMIRDLGFWNMPLLSGTLPDSW-----SKLG 132

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR-- 115
            LLSV  SG  V+ +          L++L    C  ++         L N   L  R+  
Sbjct: 133 GLLSVTFSGCGVSGTLPASWGLMVRLRALTVGNCRHLTGSLPSEWSWLPNFQILVLRQLQ 192

Query: 116 -NNAITAQGMKAFAGLINLVKLDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDM 173
            +  + A+    ++ + +L++L++     I G L      +  L +LN++    ++ +  
Sbjct: 193 LSGTLPAE----WSRVTSLLELEIVAAGDITGTLPAKWSSIKSLRTLNLE-GTQVSGTLP 247

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
              S + +L SL++  ++V+ +       ++ L  LNLEG  V+ +      ++ SL  L
Sbjct: 248 SGWSEMKSLTSLELEGTQVSGTLPPGWSSIKSLRTLNLEGTQVSGSLPPQWVSMASLRTL 307

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           NL   Q+S      +S++ SL  L L   +++    +    + +L +LNL+   +     
Sbjct: 308 NLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPLGWSEMKSLRTLNLEGTQVSGSLP 367

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
                + +L+ L L  TQV  +     S + +L ++ L  T +S     +  G+ SL +L
Sbjct: 368 PQWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTNLYLEGTQLSGSLPTEWRGIKSLTNL 427

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
            L   Q++ +     +SLT L  LDL G +++
Sbjct: 428 YLKGTQVSGSLPPQWSSLTSLRTLDLEGTQVS 459



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 118/280 (42%), Gaps = 22/280 (7%)

Query: 127 FAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
           ++ + +L  L+LE  T++ G L      +  L +LN++    ++ S       + +L++L
Sbjct: 250 WSEMKSLTSLELEG-TQVSGTLPPGWSSIKSLRTLNLE-GTQVSGSLPPQWVSMASLRTL 307

Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
            +  ++V+ +       ++ LT L LEG  V+       S + SL  LNL   Q+S    
Sbjct: 308 NLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPLGWSEMKSLRTLNLEGTQVSGSLP 367

Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
            ++  + SL+ LNL   +++         + +L +L L+   +         G+ +L  L
Sbjct: 368 PQWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTNLYLEGTQLSGSLPTEWRGIKSLTNL 427

Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
            L  TQV  S     S LT+L +++L  T +S     + + + S ++L L+         
Sbjct: 428 YLKGTQVSGSLPPQWSSLTSLRTLDLEGTQVSGRLPPEWSRMLSAENLQLE--------- 478

Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
                     H DL G+   +  A        LR    CG
Sbjct: 479 ----------HCDLSGSLPPEWSAMPRLRLVGLRGNRFCG 508



 Score = 45.4 bits (106), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 135/305 (44%), Gaps = 8/305 (2%)

Query: 54  SQGSSLLSVDL-SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
           S+ +SLL +++ +  D+T +         +L++L+     Q+S         + +LTSL 
Sbjct: 202 SRVTSLLELEIVAAGDITGTLPAKWSSIKSLRTLNLEG-TQVSGTLPSGWSEMKSLTSLE 260

Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDS 171
                 ++      ++ + +L  L+LE  T++ G L      +  L +LN++        
Sbjct: 261 LE-GTQVSGTLPPGWSSIKSLRTLNLEG-TQVSGSLPPQWVSMASLRTLNLE--GTQVSG 316

Query: 172 DMKP-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
            + P  S + +L SL++  ++V+ +       ++ L  LNLEG  V+ +      ++ SL
Sbjct: 317 TLPPGWSEMKSLTSLELEGTQVSGTLPLGWSEMKSLRTLNLEGTQVSGSLPPQWVSMASL 376

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
             LNL   Q+S      +S++ SL  L L   +++       +G+ +L +L L    +  
Sbjct: 377 RTLNLEGTQVSGTLPPGWSEMKSLTNLYLEGTQLSGSLPTEWRGIKSLTNLYLKGTQVSG 436

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
                 + L +L+ L+L  TQV        S + + E++ L    +S     + + +  L
Sbjct: 437 SLPPQWSSLTSLRTLDLEGTQVSGRLPPEWSRMLSAENLQLEHCDLSGSLPPEWSAMPRL 496

Query: 351 KSLNL 355
           + + L
Sbjct: 497 RLVGL 501


>gi|168704644|ref|ZP_02736921.1| hypothetical protein GobsU_34225 [Gemmata obscuriglobus UQM 2246]
          Length = 952

 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 118/345 (34%), Positives = 170/345 (49%), Gaps = 32/345 (9%)

Query: 46  DKWMDVIASQ---GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
           DK ++++ +Q   G SL  + LS +D+ D  L  L   + L+ LD + C  +SD     L
Sbjct: 619 DKRLEMLWTQIRRGLSLRRLVLSKTDIAD--LSPLAPLTALEELDLSGCAGVSD-----L 671

Query: 103 RGLSNLTSLSFRR-NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
             L+NLT+L F   +       +   A L  L  LDL  C  +   L  L  L  LE LN
Sbjct: 672 SPLANLTALRFLDLSGCAGGADLSPLANLTALRFLDLSGCAGV-SDLAPLANLTALEGLN 730

Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAA 219
           ++ C  +  SD+ PL+ LT L+ L +S C+   D S +A L GL+    LNL GC    +
Sbjct: 731 LRGCAGV--SDLSPLANLTGLRHLNLSGCAGWADLSPLANLTGLRH---LNLNGC-TGVS 784

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNL 278
            L  L+ L +L  L+L+ C    D     + + +L+ L+L G   ++D  L  L   T L
Sbjct: 785 DLSPLAPLTALEELDLSGCAGVSD-LSPLANLTALEGLDLSGCAGVSD--LSPLAPHTAL 841

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGIS 337
             L+L  C  G   L  L     L+ L+LS    G S L  L+ LT LE ++LS   G+S
Sbjct: 842 RFLDLSGCA-GVSCLSPLAPHTALRFLDLSGC-AGVSDLSPLANLTALEDLDLSGCAGVS 899

Query: 338 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG 381
           D  L  LA L++L+ L+L     + D  L+ L  LT L  LDL G
Sbjct: 900 D--LSPLANLTALEGLDLSGCTGVLD--LSPLAPLTALQFLDLGG 940


>gi|407849405|gb|EKG04153.1| hypothetical protein TCSYLVIO_004793 [Trypanosoma cruzi]
          Length = 835

 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 105/408 (25%), Positives = 184/408 (45%), Gaps = 63/408 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           S+L ++ L  + +++  +++L +C +L+ +  N C  +    LE L  L  LT LS   N
Sbjct: 193 SNLRNLTLCNTPLSEVMMLYLSECVSLERVVVNSCRGLR--SLECLSSLQRLTELSLL-N 249

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             IT +G+   +   +L  + L+ C             MKL+ +N              L
Sbjct: 250 MGITEEGLAFISSCNSLRHIQLDNC-------------MKLQGINC-------------L 283

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
             L  L++L +S ++V+D GI  L  L+ L  L L      ++ ++ +  L  L  L++ 
Sbjct: 284 GSLIGLRTLSVSRNRVSDDGIRSLSNLRNLEQLRLVSFNRLSS-VEPVLCLDKLLELDIT 342

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
              ++D+GC   +  G ++ L L     +  C+  ++ +  L SL               
Sbjct: 343 ENWVTDEGCAALANCGQIQKLKLA----SCRCVSDVRWICALTSLRF------------- 385

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 355
                   L+LS T V S+ L+ L+    LE +++ S +G+ D S   + GL SL  L+L
Sbjct: 386 --------LDLSKTHVRSADLQLLTVCQRLEELHVASCSGVKDASF--VEGLLSLGHLDL 435

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
               I D G  +L   T LT L L   R +TD    ++   K+L +L + G  + DA + 
Sbjct: 436 TDTSIKDAGTQSLRKCTALTFLSLQDCRFLTD--IQFVEPLKDLLNLNLEGTEVVDANII 493

Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
            +   + L +L+L     LTD  +  +  L  L SL++S + +T  G+
Sbjct: 494 PLMHCTKLEVLSLRHCLFLTD--VRCLRELKALKSLDLSGTYVTDEGV 539



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 174/413 (42%), Gaps = 58/413 (14%)

Query: 27  AFRDCA-LQDLCLGQYPGVND-KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
           A  +C  +Q L L     V+D +W+  +    +SL  +DLS + V  + L  L  C  L+
Sbjct: 353 ALANCGQIQKLKLASCRCVSDVRWICAL----TSLRFLDLSKTHVRSADLQLLTVCQRLE 408

Query: 85  SLDFNFC----------------------IQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
            L    C                        I D G + LR  + LT LS +    +T  
Sbjct: 409 ELHVASCSGVKDASFVEGLLSLGHLDLTDTSIKDAGTQSLRKCTALTFLSLQDCRFLT-- 466

Query: 123 GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
            ++    L +L+ L+LE    +   ++ L    KLE L+++  +C+  +D++ L  L  L
Sbjct: 467 DIQFVEPLKDLLNLNLEGTEVVDANIIPLMHCTKLEVLSLR--HCLFLTDVRCLRELKAL 524

Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           KSL +S + VTD G++ +     L  ++L GC +     + L  L +L ++  +R  + D
Sbjct: 525 KSLDLSGTYVTDEGVSDVSQCISLERIDLSGCCLITH-FEFLRPLTALRHVIADRMNVLD 583

Query: 243 -------DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
                     E+ S     ++ ++G  E              L  L+L    I D G+ +
Sbjct: 584 VTGLGGSGSVERVSIADCKRLGSMGMLEA-----------PRLLDLSLKKSAITDSGIHS 632

Query: 296 LTGLCN-LKCLELSD-TQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
           +   C+ L+ L L + T +   S +  L  LT L   N+  T  S   + + A L  L+ 
Sbjct: 633 VLLRCHSLRRLNLQNCTSITELSAVAQLPSLTELLVRNMKITNKSVAFVARCATLEKLQM 692

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
             ++  +ITD    +L  L  L  LDL    +T  G   L    NL+ L + G
Sbjct: 693 --VECVEITDVN--SLKYLHRLVELDLSRTSVTSGGIVGLARCYNLKKLNLSG 741


>gi|413916550|gb|AFW56482.1| hypothetical protein ZEAMMB73_356315 [Zea mays]
          Length = 660

 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 125/434 (28%), Positives = 197/434 (45%), Gaps = 59/434 (13%)

Query: 34  QDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT-DSGLIHLKDCSNLQSLDFNFCI 92
           + +CL +  GV  + ++ + +    L +VDLS      D     L   S L+ L  + C+
Sbjct: 108 RSVCLARANGVGWRGLEALVAACPKLAAVDLSHCVTAGDREAAALAAASELRDLRLDKCL 167

Query: 93  QISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVN 150
            ++D GL  +  G   L  LS +    I+  G+   A     L  L++      +G L +
Sbjct: 168 AVTDMGLAKVAVGCPKLEKLSLKWCREISDIGIDLLAKKCPELRSLNISYLKVGNGSLGS 227

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL----KGLQ 204
           +  L +LE L +  C+ I D  ++ LS G  +L+S+ +S C  VT  G+A L      LQ
Sbjct: 228 ISSLERLEELAMVCCSGIDDEGLELLSKGSDSLQSVDVSRCDHVTSEGLASLIDGRNFLQ 287

Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC------------QLSD-------DGC 245
           KL           AA  D L  +G  F   L R             ++SD       + C
Sbjct: 288 KL----------YAA--DCLHEIGQRFLSKLARLKETLTLLKLDGLEVSDSLLQAIGESC 335

Query: 246 EKFSKIGSLK---VLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN 301
            K  +IG  K   V + G + +   C       ++L +++L  C  I +  L ++   C 
Sbjct: 336 NKLVEIGLSKCSGVTDGGISSLVARC-------SDLRTIDLTCCNLITNNALDSIADNCK 388

Query: 302 -LKCLEL-SDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-A 357
            L+CL L S + +   GL  ++    NL+ I+L+  G+ D +L+ LA  S L+ L L   
Sbjct: 389 MLECLRLESCSLINEKGLERITTCCPNLKEIDLTDCGVDDAALQHLAKCSELRILKLGLC 448

Query: 358 RQITDTGLAALTSLTG-LTHLDLFGAR-ITDSGAAYLRN-FKNLRSLEIC-GGGLTDAGV 413
             I+D G+A ++S  G L  LDL+    ITD G A L N  K ++ L +C    +TD G+
Sbjct: 449 SSISDRGIAFISSNCGKLVELDLYRCNSITDDGLAALANGCKRIKLLNLCYCNKITDTGL 508

Query: 414 KHIKDLSSLTLLNL 427
            H+  L  LT L L
Sbjct: 509 GHLGSLEELTNLEL 522



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 96/203 (47%), Gaps = 28/203 (13%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
           +N+K ++ I +   +L  +DL+   V D+ L HL  CS L+ L    C  ISD G+  + 
Sbjct: 401 INEKGLERITTCCPNLKEIDLTDCGVDDAALQHLAKCSELRILKLGLCSSISDRGIAFIS 460

Query: 104 G-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
                L  L   R N+IT  G+ A A                        G  +++ LN+
Sbjct: 461 SNCGKLVELDLYRCNSITDDGLAALAN-----------------------GCKRIKLLNL 497

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLK-GLQKLTLLNLEGC-PVTAA 219
            +CN ITD+ +  L  L  L +L++ C  +VT  GI+ +  G + L  L+L+ C  V  A
Sbjct: 498 CYCNKITDTGLGHLGSLEELTNLELRCLVRVTGIGISSVAIGCKNLIELDLKRCYSVDDA 557

Query: 220 CLDSLSALG-SLFYLNLNRCQLS 241
            L +L+    +L  L ++ CQ++
Sbjct: 558 GLWALARYALNLRQLTISYCQVT 580



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 165/406 (40%), Gaps = 70/406 (17%)

Query: 80  CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
           C  L ++D + C+   D     L   S L  L   +  A+T  G+   A           
Sbjct: 130 CPKLAAVDLSHCVTAGDREAAALAAASELRDLRLDKCLAVTDMGLAKVA----------- 178

Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSKVTDSGIA 198
                        G  KLE L++KWC  I+D  +  L+     L+SL IS  KV +  + 
Sbjct: 179 ------------VGCPKLEKLSLKWCREISDIGIDLLAKKCPELRSLNISYLKVGNGSLG 226

Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVL 257
            +  L++L  L +  C                         + D+G E  SK   SL+ +
Sbjct: 227 SISSLERLEELAMVCCS-----------------------GIDDEGLELLSKGSDSLQSV 263

Query: 258 NLG-FNEITDECLVHL-KGLTNLESLNLDSC--GIGDEGLVNLTGLCNLKC------LEL 307
           ++   + +T E L  L  G   L+ L    C   IG   L  L  L           LE+
Sbjct: 264 DVSRCDHVTSEGLASLIDGRNFLQKLYAADCLHEIGQRFLSKLARLKETLTLLKLDGLEV 323

Query: 308 SDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKL-AGLSSLKSLNLDA-RQITDTG 364
           SD+ + + G         L  I LS  +G++DG +  L A  S L++++L     IT+  
Sbjct: 324 SDSLLQAIG----ESCNKLVEIGLSKCSGVTDGGISSLVARCSDLRTIDLTCCNLITNNA 379

Query: 365 LAALT-SLTGLTHLDLFGAR-ITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIKDLSS 421
           L ++  +   L  L L     I + G   +     NL+ +++   G+ DA ++H+   S 
Sbjct: 380 LDSIADNCKMLECLRLESCSLINEKGLERITTCCPNLKEIDLTDCGVDDAALQHLAKCSE 439

Query: 422 LTLLNLSQNCNLTDKTLELISGLTG-LVSLNVSN-SRITSAGLRHL 465
           L +L L    +++D+ +  IS   G LV L++   + IT  GL  L
Sbjct: 440 LRILKLGLCSSISDRGIAFISSNCGKLVELDLYRCNSITDDGLAAL 485


>gi|328719510|ref|XP_001948716.2| PREDICTED: f-box/LRR-repeat protein 14-like [Acyrthosiphon pisum]
          Length = 467

 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 105/336 (31%), Positives = 173/336 (51%), Gaps = 52/336 (15%)

Query: 52  IASQGSSLLSVDLSG-SDVTDSGL--IHLKDCSNLQSLDFNFCIQISDGGL----EHLRG 104
           I     +L+S+++SG   + D  L  + L+   N+  L+ + C Q++DGGL    + LRG
Sbjct: 156 IVQNVPNLVSLNMSGCYHIKDEDLHQMFLEHHPNITELNLSLCKQLTDGGLIRIADTLRG 215

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER-CTRIHG-GLVNLKGLMK------ 156
           L   T L  +  + IT +G    A  +  +K    R C  +   GL ++ G  K      
Sbjct: 216 L---TRLEIQGCSYITNKGFSHIARKLKKLKYLNLRSCWHLSDVGLSHISGASKDSTDGN 272

Query: 157 --LESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLE 212
             LE L ++ C  ITD  +K +S GL +L+SL +S C  +TD+G+ Y+  +  L  LNL 
Sbjct: 273 AQLEFLGLQDCQHITDEGLKYVSEGLRSLRSLNLSFCVNITDTGLNYVSRMNTLDELNLS 332

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVH 271
            C       D++S +G + YL+        +GC   +K+GSL   N+ F ++I D+ L+H
Sbjct: 333 AC-------DNISDIG-IGYLS--------EGC---TKLGSL---NVSFCDKIGDQALLH 370

Query: 272 L-KGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTN-LE 327
           +  GL  L +L+L SC I D+G++ ++  L NL+ L +     V   GL HLS     L 
Sbjct: 371 VSHGLYGLHTLSLGSCQISDDGILYISKSLRNLEVLNIGQCNSVTDKGLEHLSDSCKLLR 430

Query: 328 SINL-SFTGISDGSLRKLAGLSSLK--SLNLDARQI 360
           SI+L   T I+  +  K+  + +++  ++N D  Q+
Sbjct: 431 SIDLYGCTKITKEAKEKILKMPNIRRDTVNEDLWQL 466



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 135/304 (44%), Gaps = 49/304 (16%)

Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSG-IAYLKGLQKL 206
           ++ +  L SLN+  C  I D D+    L    N+  L +S C ++TD G I     L+ L
Sbjct: 157 VQNVPNLVSLNMSGCYHIKDEDLHQMFLEHHPNITELNLSLCKQLTDGGLIRIADTLRGL 216

Query: 207 TLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
           T L ++GC  +T      ++           R       C   S +G L  ++    + T
Sbjct: 217 TRLEIQGCSYITNKGFSHIARKLKKLKYLNLR------SCWHLSDVG-LSHISGASKDST 269

Query: 266 DECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
           D       G   LE L L  C  I DEGL  ++                        GL 
Sbjct: 270 D-------GNAQLEFLGLQDCQHITDEGLKYVS-----------------------EGLR 299

Query: 325 NLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLDL-F 380
           +L S+NLSF   I+D  L  ++ +++L  LNL A   I+D G+  L+   T L  L++ F
Sbjct: 300 SLRSLNLSFCVNITDTGLNYVSRMNTLDELNLSACDNISDIGIGYLSEGCTKLGSLNVSF 359

Query: 381 GARITDSGAAYLRN-FKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTL 438
             +I D    ++ +    L +L +    ++D G+ +I K L +L +LN+ Q  ++TDK L
Sbjct: 360 CDKIGDQALLHVSHGLYGLHTLSLGSCQISDDGILYISKSLRNLEVLNIGQCNSVTDKGL 419

Query: 439 ELIS 442
           E +S
Sbjct: 420 EHLS 423



 Score = 45.4 bits (106), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 6/156 (3%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
           + D+ +  ++    SL S++LS   ++TD+GL ++   + L  L+ + C  ISD G+ +L
Sbjct: 286 ITDEGLKYVSEGLRSLRSLNLSFCVNITDTGLNYVSRMNTLDELNLSACDNISDIGIGYL 345

Query: 103 -RGLSNLTSLSFRRNNAITAQG-MKAFAGLINLVKLDLERCTRIHGGLVNL-KGLMKLES 159
             G + L SL+    + I  Q  +    GL  L  L L  C     G++ + K L  LE 
Sbjct: 346 SEGCTKLGSLNVSFCDKIGDQALLHVSHGLYGLHTLSLGSCQISDDGILYISKSLRNLEV 405

Query: 160 LNIKWCNCITDSDMKPLSGLTN-LKSLQI-SCSKVT 193
           LNI  CN +TD  ++ LS     L+S+ +  C+K+T
Sbjct: 406 LNIGQCNSVTDKGLEHLSDSCKLLRSIDLYGCTKIT 441


>gi|242004502|ref|XP_002423122.1| fbxl14, putative [Pediculus humanus corporis]
 gi|212506068|gb|EEB10384.1| fbxl14, putative [Pediculus humanus corporis]
          Length = 461

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 100/321 (31%), Positives = 162/321 (50%), Gaps = 52/321 (16%)

Query: 61  SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRN 116
           S++LSG  +VTD GL H  +     L  L+ + C Q++D  L  + + L+NL  L     
Sbjct: 161 SLNLSGCYNVTDIGLSHAFVTTLPTLTELNLSLCKQVTDTSLGRIAQYLTNLEVLELGGC 220

Query: 117 NAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL--------MKLESLNIKWCN 166
             +T  G+     GL  L +L+L  C  I   G+ +L G           LE L ++ C 
Sbjct: 221 CNVTNTGLLLVGWGLKKLKRLNLRSCWHISDQGISHLAGPNPDVGDGNPALEYLGLQDCQ 280

Query: 167 CITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
            ++D  ++ +S GLT LKS+ +S C  +TDSG+ YL  +  L  LNL  C       D++
Sbjct: 281 RLSDEALRHVSVGLTGLKSINLSFCVSITDSGLKYLAKMTSLRELNLRAC-------DNI 333

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLN 282
           S LG  +        L++ G    S+I SL V    F ++I D+ L+H+ +GL +L+SL+
Sbjct: 334 SDLGMAY--------LAEGG----SRISSLDV---SFCDKIGDQALLHVSQGLFHLKSLS 378

Query: 283 LDSCGIGDEGLV-------NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFT 334
           L++C I D+G+V       +L  L   +C +++D  V +     +  L +L  I+L   +
Sbjct: 379 LNACNISDDGIVRIAITLHDLETLNIGQCWKITDRGVHTI----VDSLKHLRCIDLYGCS 434

Query: 335 GISDGSLRKLAGLSSLKSLNL 355
            I+   L ++  L  L +LNL
Sbjct: 435 KITTVGLERIMKLPQLTTLNL 455



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 107/350 (30%), Positives = 169/350 (48%), Gaps = 54/350 (15%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVN--LKGLMKLES 159
           RG+  +  LS +R+     QG+       NL  L+L  C  +   GL +  +  L  L  
Sbjct: 135 RGIRRVQVLSLKRSLRDVVQGIP------NLDSLNLSGCYNVTDIGLSHAFVTTLPTLTE 188

Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-P 215
           LN+  C  +TD+ +  ++  LTNL+ L++  C  VT++G+  +  GL+KL  LNL  C  
Sbjct: 189 LNLSLCKQVTDTSLGRIAQYLTNLEVLELGGCCNVTNTGLLLVGWGLKKLKRLNLRSCWH 248

Query: 216 VTAACLDSLSAL--------GSLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
           ++   +  L+           +L YL L  CQ LSD+     S  +  LK +NL F   I
Sbjct: 249 ISDQGISHLAGPNPDVGDGNPALEYLGLQDCQRLSDEALRHVSVGLTGLKSINLSFCVSI 308

Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
           TD  L +L  +T+L  LNL +C  I D G+  L                         G 
Sbjct: 309 TDSGLKYLAKMTSLRELNLRACDNISDLGMAYLA-----------------------EGG 345

Query: 324 TNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLF 380
           + + S+++SF   I D +L  ++ GL  LKSL+L+A  I+D G+  +  +L  L  L++ 
Sbjct: 346 SRISSLDVSFCDKIGDQALLHVSQGLFHLKSLSLNACNISDDGIVRIAITLHDLETLNIG 405

Query: 381 G-ARITDSGA-AYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
              +ITD G    + + K+LR +++ G   +T  G++ I  L  LT LNL
Sbjct: 406 QCWKITDRGVHTIVDSLKHLRCIDLYGCSKITTVGLERIMKLPQLTTLNL 455



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 100/211 (47%), Gaps = 38/211 (18%)

Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
           ++G+ NL+SLNL  C      G+    +  L  L  L    C +++DT +G    R    
Sbjct: 153 VQGIPNLDSLNLSGCYNVTDIGLSHAFVTTLPTLTELNLSLCKQVTDTSLG----RIAQY 208

Query: 323 LTNLESI------NLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--- 372
           LTNLE +      N++ TG+    L    GL  LK LNL +   I+D G++ L       
Sbjct: 209 LTNLEVLELGGCCNVTNTGL----LLVGWGLKKLKRLNLRSCWHISDQGISHLAGPNPDV 264

Query: 373 --GLTHLDLFG----ARITDSGAAYLR-NFKNLRS--LEICGGGLTDAGVKHIKDLSSLT 423
             G   L+  G     R++D    ++      L+S  L  C   +TD+G+K++  ++SL 
Sbjct: 265 GDGNPALEYLGLQDCQRLSDEALRHVSVGLTGLKSINLSFCVS-ITDSGLKYLAKMTSLR 323

Query: 424 LLNLSQNCNLTDKTLE-LISGLTGLVSLNVS 453
            LNL    N++D  +  L  G + + SL+VS
Sbjct: 324 ELNLRACDNISDLGMAYLAEGGSRISSLDVS 354


>gi|56797881|emb|CAH04902.1| internalin A [Listeria monocytogenes]
          Length = 773

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 121/383 (31%), Positives = 179/383 (46%), Gaps = 60/383 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN 
Sbjct: 73  LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 126

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ 
Sbjct: 127 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLAN 178

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
           LT+L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L+L
Sbjct: 179 LTSLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILANLDELSL 231

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           N  QL D G    + + +L  L+L  ++I++  L  L GLT L  L L +  I +  +  
Sbjct: 232 NGNQLKDIGT--LASLTNLTDLDLANDQISN--LAPLSGLTKLTELKLGANQISN--ISP 285

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
           L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K        
Sbjct: 286 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 343

Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
                   LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  N 
Sbjct: 344 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKVNV 401

Query: 395 -----FKNLRSLEICGGGLTDAG 412
                 KN+    I    ++D G
Sbjct: 402 SIPNTVKNVTGALIAPATISDGG 424



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 82/252 (32%), Positives = 126/252 (50%), Gaps = 24/252 (9%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 63  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 118

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            L L +  I D  +  L  L NL  LELS   +  S +  LSGLTNL+   LSF G    
Sbjct: 119 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 171

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ LA L+SL+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL 
Sbjct: 172 DLKPLANLTSLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILANLD 227

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L + G  L D G   +  L++LT L+L+ N  +++  L  +SGLT L  L +  ++I++
Sbjct: 228 ELSLNGNQLKDIGT--LASLTNLTDLDLA-NDQISN--LAPLSGLTKLTELKLGANQISN 282

Query: 460 ----AGLRHLNH 467
               AGL  L +
Sbjct: 283 ISPLAGLTALTN 294


>gi|156377140|ref|XP_001630715.1| predicted protein [Nematostella vectensis]
 gi|156217741|gb|EDO38652.1| predicted protein [Nematostella vectensis]
          Length = 398

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 158/308 (51%), Gaps = 33/308 (10%)

Query: 81  SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLD 137
           S ++SL+   C  ++D  + H  ++ L  LT L       IT   +   A  + NL  LD
Sbjct: 94  SCIESLNLKGCYNVTDTSIGHAFVKYLPTLTVLDLSLCKQITDSSLGKIADFLKNLEFLD 153

Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT---------NLKSLQ 186
           L  C  I   G L+   GL+KL+ LN++ C  I+D+ +  LSGL+         NL +L 
Sbjct: 154 LAGCCNITNTGLLLCSWGLVKLKHLNLRSCRHISDAGILHLSGLSNNINAHGNKNLTTLC 213

Query: 187 IS-CSKVTDSGIAYL-KGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLNLNRCQ-LSD 242
           +  C K+TD+ + ++ KGL  L  LNL   C ++ A L  L+ L SL  LNL  C+ +++
Sbjct: 214 LQDCQKITDNALRHISKGLINLECLNLSFCCGISGAGLAHLATLRSLRELNLRSCEGVNN 273

Query: 243 DGCEKFSKIG-SLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-- 297
           +G    +  G +L  L++ F ++I D  L H+  GL +L++L L+S  I DEGL  ++  
Sbjct: 274 EGIAHLAVGGLNLVCLDVSFCDKIGDVALNHISSGLNHLQNLGLNSSHITDEGLCKISRH 333

Query: 298 ----GLCNL-KCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLK 351
                + N+ +C +++D  + S      S L  + +I+L   T ++   L KL  L  L+
Sbjct: 334 LRELRVLNIGQCTQITDQSIASIA----SNLICITNIDLYGCTKVTKCGLEKLMHLPKLR 389

Query: 352 SLNLDARQ 359
            LNL   Q
Sbjct: 390 VLNLGLWQ 397



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 98/298 (32%), Positives = 153/298 (51%), Gaps = 27/298 (9%)

Query: 157 LESLNIKWCNCITDSDM--KPLSGLTNLKSLQIS-CSKVTDSGIAYLKG-LQKLTLLNLE 212
           +ESLN+K C  +TD+ +    +  L  L  L +S C ++TDS +  +   L+ L  L+L 
Sbjct: 96  IESLNLKGCYNVTDTSIGHAFVKYLPTLTVLDLSLCKQITDSSLGKIADFLKNLEFLDLA 155

Query: 213 GC--PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI-------GSLKVLNLGFN 262
           GC        L     L  L +LNL  C+ +SD G    S +       G+  +  L   
Sbjct: 156 GCCNITNTGLLLCSWGLVKLKHLNLRSCRHISDAGILHLSGLSNNINAHGNKNLTTLCLQ 215

Query: 263 E---ITDECLVHL-KGLTNLESLNLD-SCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSG 316
           +   ITD  L H+ KGL NLE LNL   CGI   GL +L  L +L+ L L   + V + G
Sbjct: 216 DCQKITDNALRHISKGLINLECLNLSFCCGISGAGLAHLATLRSLRELNLRSCEGVNNEG 275

Query: 317 LRHLS-GLTNLESINLSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLT 372
           + HL+ G  NL  +++SF   I D +L  ++ GL+ L++L L++  ITD GL  ++  L 
Sbjct: 276 IAHLAVGGLNLVCLDVSFCDKIGDVALNHISSGLNHLQNLGLNSSHITDEGLCKISRHLR 335

Query: 373 GLTHLDLFG-ARITD-SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
            L  L++    +ITD S A+   N   + ++++ G   +T  G++ +  L  L +LNL
Sbjct: 336 ELRVLNIGQCTQITDQSIASIASNLICITNIDLYGCTKVTKCGLEKLMHLPKLRVLNL 393



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 91/175 (52%), Gaps = 9/175 (5%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           +TD+ L H+ K   NL+ L+ +FC  IS  GL HL  L +L  L+ R    +  +G+   
Sbjct: 220 ITDNALRHISKGLINLECLNLSFCCGISGAGLAHLATLRSLRELNLRSCEGVNNEGIAHL 279

Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLS-GLTNLK 183
           A G +NLV LD+  C +I    +N    GL  L++L +   + ITD  +  +S  L  L+
Sbjct: 280 AVGGLNLVCLDVSFCDKIGDVALNHISSGLNHLQNLGLNSSH-ITDEGLCKISRHLRELR 338

Query: 184 SLQI-SCSKVTDSGIAYLKG-LQKLTLLNLEGCPVTAAC-LDSLSALGSLFYLNL 235
            L I  C+++TD  IA +   L  +T ++L GC     C L+ L  L  L  LNL
Sbjct: 339 VLNIGQCTQITDQSIASIASNLICITNIDLYGCTKVTKCGLEKLMHLPKLRVLNL 393



 Score = 45.1 bits (105), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 97/184 (52%), Gaps = 23/184 (12%)

Query: 301 NLK-CLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAG-LSSLKSLNLDA 357
           NLK C  ++DT +G + +++L  LT L+   LS    I+D SL K+A  L +L+ L+L  
Sbjct: 100 NLKGCYNVTDTSIGHAFVKYLPTLTVLD---LSLCKQITDSSLGKIADFLKNLEFLDLAG 156

Query: 358 R-QITDTGLAALT-SLTGLTHLDLFGAR-ITDSGAAYLRNF---------KNLRSL--EI 403
              IT+TGL   +  L  L HL+L   R I+D+G  +L            KNL +L  + 
Sbjct: 157 CCNITNTGLLLCSWGLVKLKHLNLRSCRHISDAGILHLSGLSNNINAHGNKNLTTLCLQD 216

Query: 404 CGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAG 461
           C   +TD  ++HI K L +L  LNLS  C ++   L  ++ L  L  LN+ +   + + G
Sbjct: 217 CQK-ITDNALRHISKGLINLECLNLSFCCGISGAGLAHLATLRSLRELNLRSCEGVNNEG 275

Query: 462 LRHL 465
           + HL
Sbjct: 276 IAHL 279



 Score = 38.5 bits (88), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 6/136 (4%)

Query: 32  ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLKD-CSNLQSLDFN 89
           +L++L L    GVN++ +  +A  G +L+ +D+S  D + D  L H+    ++LQ+L  N
Sbjct: 259 SLRELNLRSCEGVNNEGIAHLAVGGLNLVCLDVSFCDKIGDVALNHISSGLNHLQNLGLN 318

Query: 90  FCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRI-HG 146
               I+D GL  + R L  L  L+  +   IT Q + + A  LI +  +DL  CT++   
Sbjct: 319 SS-HITDEGLCKISRHLRELRVLNIGQCTQITDQSIASIASNLICITNIDLYGCTKVTKC 377

Query: 147 GLVNLKGLMKLESLNI 162
           GL  L  L KL  LN+
Sbjct: 378 GLEKLMHLPKLRVLNL 393


>gi|84043404|ref|XP_951492.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
 gi|33348240|gb|AAQ15567.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
 gi|62358736|gb|AAX79191.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei]
          Length = 1394

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 101/378 (26%), Positives = 168/378 (44%), Gaps = 56/378 (14%)

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
           ++A A ++ L KL L  CT I  G+  L  L +L+ L++   N   +S ++ L     + 
Sbjct: 477 VEALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNES-LRSLCLSQTVV 535

Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           SL +S C K+T+  ++++  L+ L  LNL  C    A  +++  L  L    L+   ++D
Sbjct: 536 SLNLSHCWKMTN--VSHISSLEALNELNLSNCFGINAGWEAIEKLQQLHVAILSNTHITD 593

Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV---NLTG 298
                FSK  +L  L+L F N++ D  +  L  +T LE LNLDSC    +GL     L  
Sbjct: 594 RNISHFSKCKNLVTLDLSFCNKLLD--VTALSNITTLEELNLDSCSNIRKGLSVLGELPR 651

Query: 299 LC--NLKCLELSDTQVGSSG------------------LRHLSGLTNLESINLSFTGISD 338
           LC  N+K ++L D+ + S G                  +  LS L  LE +NL +     
Sbjct: 652 LCVLNIKGVQLEDSVIVSLGNGGSLVKVSLDDCAGFGDVTPLSNLVTLEELNLHYCDKVT 711

Query: 339 GSLRKLAGLSSLKSLNLDARQITD------------------------TGLAALTSLTGL 374
             +  L  L  L+ L+L   Q+ +                        T ++++ SLT L
Sbjct: 712 SGMGTLGRLPQLRVLDLGRTQVDNNSLENICTSSIPLVSLNLSHCKKITSISSIASLTAL 771

Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
             L++  +    SG         LR   +    + D  ++++ +  SL  LNL+   ++T
Sbjct: 772 EELNIDNSCNVTSGWNVFGTLHQLRVATLSNTRINDENIRYVSECKSLNTLNLAFCKDIT 831

Query: 435 DKTLELISGLTGLVSLNV 452
           D T   +S +T L  LN+
Sbjct: 832 DVT--ALSKITMLEELNL 847



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 113/429 (26%), Positives = 183/429 (42%), Gaps = 78/429 (18%)

Query: 32  ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
           AL +L L    G+N  W  +   Q   L    LS + +TD  + H   C NL +LD +FC
Sbjct: 556 ALNELNLSNCFGINAGWEAIEKLQ--QLHVAILSNTHITDRNISHFSKCKNLVTLDLSFC 613

Query: 92  IQISDGGLEHLRGLSNLTSL-------------------SFRRNNAITAQGMKAFAGLI- 131
            ++ D     +  LSN+T+L                      R   +  +G++    +I 
Sbjct: 614 NKLLD-----VTALSNITTLEELNLDSCSNIRKGLSVLGELPRLCVLNIKGVQLEDSVIV 668

Query: 132 ------NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
                 +LVK+ L+ C    G +  L  L+ LE LN+ +C+ +T S M  L  L  L+ L
Sbjct: 669 SLGNGGSLVKVSLDDCAGF-GDVTPLSNLVTLEELNLHYCDKVT-SGMGTLGRLPQLRVL 726

Query: 186 QI--------------------------SCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTA 218
            +                           C K+T  S IA L  L++L + N   C VT+
Sbjct: 727 DLGRTQVDNNSLENICTSSIPLVSLNLSHCKKITSISSIASLTALEELNIDN--SCNVTS 784

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTN 277
              +    L  L    L+  +++D+     S+  SL  LNL F  +ITD  +  L  +T 
Sbjct: 785 G-WNVFGTLHQLRVATLSNTRINDENIRYVSECKSLNTLNLAFCKDITD--VTALSKITM 841

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES---INLSFT 334
           LE LNLD C    +G+  L  L     L + +  +G S  +  S L N +S   +NL  +
Sbjct: 842 LEELNLDCCPNIRKGIETLGTLPKAGILSMKECYMGDSDAQQCSILWNSKSLVKLNLERS 901

Query: 335 GISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
            +   S++ L+ +++L+ L L  AR++       + S + L  L +   + TD      +
Sbjct: 902 -MGFISVKALSNIATLEELVLGHARKV-----CCIPSFSCLPRLRVLNLKYTDFNDDVTK 955

Query: 394 NFKNLRSLE 402
           N    +SL+
Sbjct: 956 NISESKSLQ 964



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 109/396 (27%), Positives = 176/396 (44%), Gaps = 41/396 (10%)

Query: 94  ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
           I +    HL  +  L  L+      +T   ++  + L NL  L+L         +  +  
Sbjct: 189 IDNNDARHLFNIGTLEELAITDTMQLT--NIRGISRLTNLKCLELNSTDIDDSCIGEISA 246

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLE 212
             KL  L++  CN ITD+   P+S L+ L+ L + SC  +T  GI  L  L +L +L+L 
Sbjct: 247 CAKLSKLSVSECNNITDA--TPISQLSALEELNLNSCYHIT-KGIGTLGMLLRLRILDLS 303

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRC-QLSD---------------DGCEKFSK------ 250
           G PV   CL  L   GSL  LN++ C QL+D               +GC + ++      
Sbjct: 304 GVPVEDNCLKDLCDCGSLERLNISYCIQLTDINPLSNATAIEELNLNGCRRITRGIGVVW 363

Query: 251 -IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELS 308
            +  L+VL++    +++  L  +     L  ++LD+C G GD  L  L+ +  L+ L + 
Sbjct: 364 ALPKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTL--LSSIVTLEELNIQ 421

Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL--- 365
                 SG+  L  L  L  +N+    IS      +    SL  LN+++     TGL   
Sbjct: 422 KCADIISGVGSLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMESI----TGLIDV 477

Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
            AL ++  L  L L G    D+G   L N   L+ L++ G    +  ++ +    ++  L
Sbjct: 478 EALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSL 537

Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
           NLS    +T+  +  IS L  L  LN+SN    +AG
Sbjct: 538 NLSHCWKMTN--VSHISSLEALNELNLSNCFGINAG 571



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 109/438 (24%), Positives = 185/438 (42%), Gaps = 51/438 (11%)

Query: 62   VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL----------------RGL 105
            ++L  +D  D    ++ +  +LQSL+ + C  ++D  +                   +G 
Sbjct: 942  LNLKYTDFNDDVTKNISESKSLQSLNLSHCKWVTDISVLSSLLALEELNVNCCNGIRKGW 1001

Query: 106  SNLTSLSFRR-----NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
             +L  L   R     +  ITA+ +   +    LVKL   RC ++    V +  +  LE L
Sbjct: 1002 ESLGKLPLLRVAILSDTNITAKDIACLSSCKTLVKLKFFRCEKLSDVTV-VYEIQSLEEL 1060

Query: 161  NIKWCNCITDSDMKPLSGL------TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
             ++ C+      +K L+ L        L    +  S ++   I   K L +L +   E  
Sbjct: 1061 IVRSCS----DGLKGLNALGTLPRLRFLLLRNVRGSDISVESIGTSKSLVRLHIEMREDL 1116

Query: 215  PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
              T      LS + SL  L+L  C  +  G     K+  LK L+LG ++I++  L ++  
Sbjct: 1117 TDTTP----LSNITSLEELSLRECGDNLGGVGTLEKLPRLKSLDLGLSDISNSTLNYIFL 1172

Query: 275  LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE---LSDTQVGSSGLRHLSGLTNLESINL 331
              ++ SLNLDS       L +++ + NL  LE   L      +SG + LS L  L  +NL
Sbjct: 1173 SRSITSLNLDS----SWELTDISHISNLTALEELNLGGCYYITSGWKALSELPRLRVLNL 1228

Query: 332  SFTGIS---DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
              T ++   DG    ++   SL +LNL+   +TD    A  ++  L  L +   +    G
Sbjct: 1229 ESTRVTTRYDGYY--ISRCKSLVTLNLELCDMTDASYIA--NIKTLEELHIGKCKELTQG 1284

Query: 389  AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGL 447
             + L     LR L +    +TD  ++ I+   ++  LNLS    L D T L  I  +  L
Sbjct: 1285 FSALFTLPRLRILNLICSLITDEDLREIQPPHTIEELNLSYCVELNDITPLGRIKSIKKL 1344

Query: 448  VSLNVSNSRITSAGLRHL 465
                  ++R ++ G R L
Sbjct: 1345 HLRQSHDARRSTEGFRSL 1362



 Score = 42.0 bits (97), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 92/228 (40%), Gaps = 61/228 (26%)

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
           LS + + D  + ++ +C +L +L+  FC  I+D                           
Sbjct: 800 LSNTRINDENIRYVSECKSLNTLNLAFCKDITD--------------------------- 832

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
           + A + +  L +L+L+ C  I  G+  L  L K   L++K C  + DSD +  S L N K
Sbjct: 833 VTALSKITMLEELNLDCCPNIRKGIETLGTLPKAGILSMKECY-MGDSDAQQCSILWNSK 891

Query: 184 SL-----QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           SL     + S   ++   ++ +  L++L L    G      C+ S               
Sbjct: 892 SLVKLNLERSMGFISVKALSNIATLEELVL----GHARKVCCIPS--------------- 932

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
                    FS +  L+VLNL + +  D+   ++    +L+SLNL  C
Sbjct: 933 ---------FSCLPRLRVLNLKYTDFNDDVTKNISESKSLQSLNLSHC 971


>gi|343421695|emb|CCD18730.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
          Length = 582

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 112/374 (29%), Positives = 170/374 (45%), Gaps = 42/374 (11%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  +DLSG+ V D     L +  NL  ++   C  +SD  +  L  + +L  L      +
Sbjct: 129 LRELDLSGTRVQDEVFYELSENPNLTKVNLRQCQGLSD--VSPLADIESLQELDLGLCRS 186

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           I  +G++  A L NL  L+LE+       L  L     LE LN+  C  + D  + PLS 
Sbjct: 187 IN-EGVQDLAELPNLRVLNLEKVNVPSDSLFELCKSRSLEKLNLSSCKRLLD--VSPLSE 243

Query: 179 LTNLKSLQIS--CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           +  L  L +S  CS  T  G++ L  LQ L +LNL    VT   L  LS   SL  LNL+
Sbjct: 244 IKTLVELDLSLCCSLFT--GVSELGKLQCLRILNLRNTAVTDHSLPGLSESDSLEILNLS 301

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
            C+                    G   ++      LK + +L  L+L +C    +G+ +L
Sbjct: 302 SCR--------------------GLTNVSP-----LKEIKSLVQLDLSNCPALRDGIGSL 336

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL 355
             L  L  L+L +T + +  LR +    +LE ++ S  T +SD  +  ++ L++L  LNL
Sbjct: 337 VALPFLCTLKLRNTAITNESLRDICESESLEELDASSCTALSD--VFHISVLNTLVELNL 394

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR--SLEICGGGLTDAGV 413
                   G+ A+ SL  L  LD+ G  IT+     LR   +L   SL  C   LTD  V
Sbjct: 395 SFCPNLVKGMEAIASLPFLRALDISGTPITNHCLRGLRKSNSLETVSLRSC-NNLTD--V 451

Query: 414 KHIKDLSSLTLLNL 427
            ++  +S+L  L+L
Sbjct: 452 FYLSKISTLLRLDL 465



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 149/318 (46%), Gaps = 35/318 (11%)

Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
           GL NL+ L +S ++V D     L     LT +NL  C   +  +  L+ + SL  L+L  
Sbjct: 125 GLKNLRELDLSGTRVQDEVFYELSENPNLTKVNLRQCQGLSD-VSPLADIESLQELDLGL 183

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
           C+  ++G +  +++ +L+VLNL    +  + L  L    +LE LNL SC    + L++++
Sbjct: 184 CRSINEGVQDLAELPNLRVLNLEKVNVPSDSLFELCKSRSLEKLNLSSC----KRLLDVS 239

Query: 298 GLCNLKCLELSDTQVGSS---GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
            L  +K L   D  +  S   G+  L  L  L  +NL  T ++D SL  L+   SL+ LN
Sbjct: 240 PLSEIKTLVELDLSLCCSLFTGVSELGKLQCLRILNLRNTAVTDHSLPGLSESDSLEILN 299

Query: 355 LDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
           L + R +T+  ++ L  +  L  LDL        G   L     L +L++    +T+  +
Sbjct: 300 LSSCRGLTN--VSPLKEIKSLVQLDLSNCPALRDGIGSLVALPFLCTLKLRNTAITNESL 357

Query: 414 K-----------------------HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
           +                       HI  L++L  LNLS   NL  K +E I+ L  L +L
Sbjct: 358 RDICESESLEELDASSCTALSDVFHISVLNTLVELNLSFCPNLV-KGMEAIASLPFLRAL 416

Query: 451 NVSNSRITSAGLRHLNHA 468
           ++S + IT+  LR L  +
Sbjct: 417 DISGTPITNHCLRGLRKS 434



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 10/187 (5%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL--SFRRN 116
           L ++ L  + +T+  L  + +  +L+ LD + C  +SD  + H+  L+ L  L  SF  N
Sbjct: 342 LCTLKLRNTAITNESLRDICESESLEELDASSCTALSD--VFHISVLNTLVELNLSFCPN 399

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
                +GM+A A L  L  LD+      +  L  L+    LE+++++ CN +TD  +  L
Sbjct: 400 ---LVKGMEAIASLPFLRALDISGTPITNHCLRGLRKSNSLETVSLRSCNNLTD--VFYL 454

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           S ++ L  L + C      G+  L  L +L +LNLEG       +  LS   SL  L L+
Sbjct: 455 SKISTLLRLDLGCCISLQKGVGTLGKLPRLRILNLEGTRAANDWIIGLSTSRSLAVLILS 514

Query: 237 RC-QLSD 242
            C  LSD
Sbjct: 515 SCLALSD 521



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 107/230 (46%), Gaps = 9/230 (3%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
           LK+  +L  LD + C  + DG +  L  L  L +L  R N AIT + ++      +L +L
Sbjct: 312 LKEIKSLVQLDLSNCPALRDG-IGSLVALPFLCTLKLR-NTAITNESLRDICESESLEEL 369

Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
           D   CT +   + ++  L  L  LN+ +C  +    M+ ++ L  L++L IS + +T+  
Sbjct: 370 DASSCTAL-SDVFHISVLNTLVELNLSFCPNLVKG-MEAIASLPFLRALDISGTPITNHC 427

Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
           +  L+    L  ++L  C         LS + +L  L+L  C     G     K+  L++
Sbjct: 428 LRGLRKSNSLETVSLRSCNNLTDVF-YLSKISTLLRLDLGCCISLQKGVGTLGKLPRLRI 486

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
           LNL      ++ ++ L    +L  L L SC      L +++ L N++ LE
Sbjct: 487 LNLEGTRAANDWIIGLSTSRSLAVLILSSCL----ALSDVSLLANIEPLE 532


>gi|159486717|ref|XP_001701384.1| hypothetical protein CHLREDRAFT_153692 [Chlamydomonas reinhardtii]
 gi|158271686|gb|EDO97500.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 293

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/129 (43%), Positives = 78/129 (60%), Gaps = 11/129 (8%)

Query: 348 SSLKSLNLDARQI-------TDTGLAALTSLTGLTHLDLFGARITDSGAAYL---RNFKN 397
           S+L  LNL   ++       TD  L  ++ L+ LT LD+FG R+TD+GAA L      + 
Sbjct: 116 STLTHLNLTYTKVCVLRGTLTDAALRHVSRLSCLTALDVFGCRLTDAGAAVLGGAPALRG 175

Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSNSR 456
           LRSLE CGGG+TDAG   +  L++LT LNLSQN  L D  +  L + L  L  L+++++ 
Sbjct: 176 LRSLECCGGGITDAGALCLARLTALTSLNLSQNPRLGDAGVRSLAAHLAELQVLSLNHTN 235

Query: 457 ITSAGLRHL 465
           +TSA LR L
Sbjct: 236 VTSACLREL 244



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 11/137 (8%)

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT-LLNLEGC-----PVTAACL 221
           +TD+ ++ +S L+ L +L +   ++TD+G A L G   L  L +LE C        A CL
Sbjct: 135 LTDAALRHVSRLSCLTALDVFGCRLTDAGAAVLGGAPALRGLRSLECCGGGITDAGALCL 194

Query: 222 DSLSALGSLFYLNLNR-CQLSDDGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
             L+AL S   LNL++  +L D G     + +  L+VL+L    +T  CL  L  L  L 
Sbjct: 195 ARLTALTS---LNLSQNPRLGDAGVRSLAAHLAELQVLSLNHTNVTSACLRELAQLPWLR 251

Query: 280 SLNLDSCGIGDEGLVNL 296
           SL L    + + G+  L
Sbjct: 252 SLALAGSRVSEAGVARL 268



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 30/179 (16%)

Query: 248 FSKIGSLKVLNLGFNEI-------TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           +    +L  LNL + ++       TD  L H+  L+ L +L++  C + D G   L G  
Sbjct: 112 WGPPSTLTHLNLTYTKVCVLRGTLTDAALRHVSRLSCLTALDVFGCRLTDAGAAVLGGAP 171

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQ 359
            L+                  GL +LE       GI+D     LA L++L SLNL    +
Sbjct: 172 ALR------------------GLRSLECCG---GGITDAGALCLARLTALTSLNLSQNPR 210

Query: 360 ITDTGLAALTS-LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
           + D G+ +L + L  L  L L    +T +    L     LRSL + G  +++AGV  +K
Sbjct: 211 LGDAGVRSLAAHLAELQVLSLNHTNVTSACLRELAQLPWLRSLALAGSRVSEAGVARLK 269


>gi|283779449|ref|YP_003370204.1| hypothetical protein Psta_1669 [Pirellula staleyi DSM 6068]
 gi|283437902|gb|ADB16344.1| hypothetical protein Psta_1669 [Pirellula staleyi DSM 6068]
          Length = 633

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 72/138 (52%)

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
           L+LG   +TD+ L  L     L+ L+L    + D GL  L  L  L  L L  T + S+ 
Sbjct: 478 LSLGRTTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLEQLDQLTQLNQLFLEGTAISSAS 537

Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
           +  ++ L NLE ++LS   I+D  L K+A L  LK L L    +TD GLA L SL  L  
Sbjct: 538 IPAIARLRNLEELDLSKVNIADDDLAKIATLKQLKVLYLVGTPVTDAGLAKLVSLQNLEM 597

Query: 377 LDLFGARITDSGAAYLRN 394
           LDL G R++   A  L++
Sbjct: 598 LDLRGTRVSADAAEKLKS 615



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 90/170 (52%), Gaps = 4/170 (2%)

Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
           +GF +++D+ L+         +L+L    + D+GL  L     LK L+LS T+V  +GL 
Sbjct: 456 VGFLDVSDQDLLACVSPATTINLSLGRTTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLE 515

Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
            L  LT L  + L  T IS  S+  +A L +L+ L+L    I D  LA + +L  L  L 
Sbjct: 516 QLDQLTQLNQLFLEGTAISSASIPAIARLRNLEELDLSKVNIADDDLAKIATLKQLKVLY 575

Query: 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLT-DAGVK---HIKDLSSLTL 424
           L G  +TD+G A L + +NL  L++ G  ++ DA  K    IK L+++ L
Sbjct: 576 LVGTPVTDAGLAKLVSLQNLEMLDLRGTRVSADAAEKLKSRIKSLANVLL 625



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 66/118 (55%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
             +TD  +  L     LK L +S +KVTD+G+  L  L +L  L LEG  +++A + +++
Sbjct: 483 TTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLEQLDQLTQLNQLFLEGTAISSASIPAIA 542

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
            L +L  L+L++  ++DD   K + +  LKVL L    +TD  L  L  L NLE L+L
Sbjct: 543 RLRNLEELDLSKVNIADDDLAKIATLKQLKVLYLVGTPVTDAGLAKLVSLQNLEMLDL 600



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 27/168 (16%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++ +++ L  + VTD GL  L     L+ LD +   +++D GLE L  L+ L  L F   
Sbjct: 473 ATTINLSLGRTTVTDQGLAQLGQFKRLKWLDLSLT-KVTDTGLEQLDQLTQLNQL-FLEG 530

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
            AI++  + A A L NL +LDL +        VN                 I D D+  +
Sbjct: 531 TAISSASIPAIARLRNLEELDLSK--------VN-----------------IADDDLAKI 565

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
           + L  LK L +  + VTD+G+A L  LQ L +L+L G  V+A   + L
Sbjct: 566 ATLKQLKVLYLVGTPVTDAGLAKLVSLQNLEMLDLRGTRVSADAAEKL 613



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 67/138 (48%), Gaps = 2/138 (1%)

Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
           VT   L  L     L +L+L+  +++D G E+  ++  L  L L    I+   +  +  L
Sbjct: 485 VTDQGLAQLGQFKRLKWLDLSLTKVTDTGLEQLDQLTQLNQLFLEGTAISSASIPAIARL 544

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
            NLE L+L    I D+ L  +  L  LK L L  T V  +GL  L  L NLE ++L  T 
Sbjct: 545 RNLEELDLSKVNIADDDLAKIATLKQLKVLYLVGTPVTDAGLAKLVSLQNLEMLDLRGTR 604

Query: 336 ISDGSLRKLAGLSSLKSL 353
           +S  +  KL   S +KSL
Sbjct: 605 VSADAAEKLK--SRIKSL 620



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 64/129 (49%)

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           L+L R  ++D G  +  +   LK L+L   ++TD  L  L  LT L  L L+   I    
Sbjct: 478 LSLGRTTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLEQLDQLTQLNQLFLEGTAISSAS 537

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
           +  +  L NL+ L+LS   +    L  ++ L  L+ + L  T ++D  L KL  L +L+ 
Sbjct: 538 IPAIARLRNLEELDLSKVNIADDDLAKIATLKQLKVLYLVGTPVTDAGLAKLVSLQNLEM 597

Query: 353 LNLDARQIT 361
           L+L   +++
Sbjct: 598 LDLRGTRVS 606



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 65/135 (48%), Gaps = 5/135 (3%)

Query: 333 FTGISDGSLRKLAGLSSLKSLNLD--ARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
           F  +SD  L  LA +S   ++NL      +TD GLA L     L  LDL   ++TD+G  
Sbjct: 458 FLDVSDQDL--LACVSPATTINLSLGRTTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLE 515

Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
            L     L  L + G  ++ A +  I  L +L  L+LS+  N+ D  L  I+ L  L  L
Sbjct: 516 QLDQLTQLNQLFLEGTAISSASIPAIARLRNLEELDLSK-VNIADDDLAKIATLKQLKVL 574

Query: 451 NVSNSRITSAGLRHL 465
            +  + +T AGL  L
Sbjct: 575 YLVGTPVTDAGLAKL 589


>gi|298360724|gb|ADI77941.1| truncated internalin A [Listeria monocytogenes]
          Length = 403

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 106/322 (32%), Positives = 164/322 (50%), Gaps = 35/322 (10%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD  +  ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366

Query: 354 NLDARQITD-TGLAALTSLTGL 374
                +++D + LA LT++  L
Sbjct: 367 FFYNNKVSDVSSLANLTNINWL 388



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            +D L  L +L  +N +  QL+D        +  L  + +  N+I D  +  L  LTNL 
Sbjct: 90  SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145

Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            L L +  I D + L NLT   NL  LELS   +  S +  LSGLT+L+   LSF G   
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQV 197

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
             L+ LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
             L + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308

Query: 459 S----AGLRHLNH 467
           +    AGL  L +
Sbjct: 309 NISPLAGLTALTN 321


>gi|17546075|ref|NP_519477.1| GALA protein 4 [Ralstonia solanacearum GMI1000]
 gi|17428371|emb|CAD15058.1| type III effector protein gala6 [Ralstonia solanacearum GMI1000]
          Length = 620

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 176/430 (40%), Gaps = 52/430 (12%)

Query: 65  SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF-------RRNN 117
           +GS ++  GL HL     L+SL+ N  I+I   G   L    +L SLS        R   
Sbjct: 174 TGSAISAEGLAHLASMP-LKSLNLN-GIEIGVEGARTLAASKSLVSLSLIGCGIGDRAAQ 231

Query: 118 AITAQ----------------GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
           A+ A                 G +A AG   LV L+L      + G   L     L SL+
Sbjct: 232 ALVASRSIQCLDLSVNRIGRDGAQALAG-APLVSLNLHNNEIGNEGARVLATSRTLTSLD 290

Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
           +   N + ++  +  +G T LK L ++   ++  G   L   + LT L+L    +  A  
Sbjct: 291 VS-NNGVGNAGAEAFAGNTVLKQLSLAGGMISGDGAQALADNKSLTDLDLSNNRLGDAGA 349

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD--------------- 266
            +L+   S   L L   ++  DG E  ++   L+ LNL +N I                 
Sbjct: 350 QALADSESFVSLKLGGNEIGADGAEALARNVVLQSLNLSYNPIGFWGVNALGRAKLRKLD 409

Query: 267 --ECLVHLKGL------TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
              C +   G       T+L SL L S  IGD+G   L     L  L LS   + + G +
Sbjct: 410 LCACAIDSDGASALARNTSLASLYLGSNRIGDDGARALAKNSTLTLLNLSGNNIHAVGAQ 469

Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
            L+   +L +++LS  GI D     LA    L SLNL   QI  TG   L     L  LD
Sbjct: 470 ALASNDSLITLDLSRNGIGDDGTAALACHPRLTSLNLSRNQIGSTGAQQLAKSATLAELD 529

Query: 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD--K 436
           L   RI   GA  L     L +L +    + +AG + + +  SLT L+  +N    D  K
Sbjct: 530 LSENRIGPEGAEALARSTVLTTLNVSYNAIGEAGARALAESVSLTSLDARRNGIGEDGAK 589

Query: 437 TLELISGLTG 446
            LE  + +TG
Sbjct: 590 VLEANTRITG 599



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 146/337 (43%), Gaps = 4/337 (1%)

Query: 56  GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
           G+ L+S++L  +++ + G   L     L SLD +    + + G E   G + L  LS   
Sbjct: 259 GAPLVSLNLHNNEIGNEGARVLATSRTLTSLDVSNN-GVGNAGAEAFAGNTVLKQLSLA- 316

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
              I+  G +A A   +L  LDL        G   L       SL +   N I     + 
Sbjct: 317 GGMISGDGAQALADNKSLTDLDLSNNRLGDAGAQALADSESFVSLKLG-GNEIGADGAEA 375

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           L+    L+SL +S + +   G+  L G  KL  L+L  C + +    +L+   SL  L L
Sbjct: 376 LARNVVLQSLNLSYNPIGFWGVNAL-GRAKLRKLDLCACAIDSDGASALARNTSLASLYL 434

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
              ++ DDG    +K  +L +LNL  N I       L    +L +L+L   GIGD+G   
Sbjct: 435 GSNRIGDDGARALAKNSTLTLLNLSGNNIHAVGAQALASNDSLITLDLSRNGIGDDGTAA 494

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           L     L  L LS  Q+GS+G + L+    L  ++LS   I       LA  + L +LN+
Sbjct: 495 LACHPRLTSLNLSRNQIGSTGAQQLAKSATLAELDLSENRIGPEGAEALARSTVLTTLNV 554

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
               I + G  AL     LT LD     I + GA  L
Sbjct: 555 SYNAIGEAGARALAESVSLTSLDARRNGIGEDGAKVL 591


>gi|443316011|ref|ZP_21045475.1| Leucine Rich Repeat (LRR)-containing protein [Leptolyngbya sp. PCC
           6406]
 gi|442784393|gb|ELR94269.1| Leucine Rich Repeat (LRR)-containing protein [Leptolyngbya sp. PCC
           6406]
          Length = 437

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 104/326 (31%), Positives = 158/326 (48%), Gaps = 52/326 (15%)

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
           D++PLS LTNL SL +S ++++D  I  L  L KL  L LE   +T   + SL  L +L 
Sbjct: 94  DVRPLSTLTNLTSLVLSGNQISD--IQPLASLTKLESLFLESNQITN--IQSLGGLHNLT 149

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-----------------LVHLKG 274
           +L+L+  Q+ D   +  S +  L+ L L  N+I D                   +V +  
Sbjct: 150 WLSLSGNQVVD--VQPLSNLTGLEWLFLDDNQIVDVAPLATLQNLERLLLSYNQIVEIGA 207

Query: 275 LTNLESL-NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
           L+ LE L NL   G   E +  L+GL NL  LEL + QV    ++ L+ L NL  + L  
Sbjct: 208 LSALEKLQNLYLNGNQIEDVQPLSGLRNLAWLELKENQV--MNIQPLADLENLRWLGLDD 265

Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
             I D  ++ LA LS+LK+L L+  QITD  +++L +LT L  L L   +I D  +  L 
Sbjct: 266 NQIVD--VQPLAALSTLKNLYLNGNQITD--VSSLAALTNLESLVLGDNQIVDIQSLSL- 320

Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV- 452
             +NL  L + G          I ++S L+ L   +   L D  ++ +  L  L +L+V 
Sbjct: 321 -LENLTFLVLSG--------NQIVNVSPLSALVRLERLGLNDNQIQDVQPLATLTNLSVL 371

Query: 453 --SNSRIT---------SAGLRHLNH 467
             SN++I          + GL  L+H
Sbjct: 372 VLSNNQIVDVEPLAALENVGLLSLDH 397



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 165/338 (48%), Gaps = 39/338 (11%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L S+ LSG+ ++D  +  L   + L+SL F    QI++  ++ L GL NLT LS   N
Sbjct: 102 TNLTSLVLSGNQISD--IQPLASLTKLESL-FLESNQITN--IQSLGGLHNLTWLSLSGN 156

Query: 117 NAITAQGMKAFAGL----------INLVKL----DLERCTRIHGGLVNLKGLMKLESLNI 162
             +  Q +    GL          +++  L    +LER    +  +V +  L  LE L  
Sbjct: 157 QVVDVQPLSNLTGLEWLFLDDNQIVDVAPLATLQNLERLLLSYNQIVEIGALSALEKLQN 216

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
            + N     D++PLSGL NL  L++  ++V +  I  L  L+ L  L L+   +    + 
Sbjct: 217 LYLNGNQIEDVQPLSGLRNLAWLELKENQVMN--IQPLADLENLRWLGLDDNQIVD--VQ 272

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
            L+AL +L  L LN  Q++D      + + +L+ L LG N+I D     ++ L+ LE  N
Sbjct: 273 PLAALSTLKNLYLNGNQITD--VSSLAALTNLESLVLGDNQIVD-----IQSLSLLE--N 323

Query: 283 LDSCGIGDEGLVN---LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
           L    +    +VN   L+ L  L+ L L+D Q+    ++ L+ LTNL  + LS   I D 
Sbjct: 324 LTFLVLSGNQIVNVSPLSALVRLERLGLNDNQI--QDVQPLATLTNLSVLVLSNNQIVD- 380

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
            +  LA L ++  L+LD  QI D    +  S  GL HL
Sbjct: 381 -VEPLAALENVGLLSLDHNQIVDIQPLSQLSRLGLLHL 417


>gi|15896519|ref|NP_349868.1| ChW repeat-containing protein [Clostridium acetobutylicum ATCC 824]
 gi|337738478|ref|YP_004637925.1| ChW repeat-containing protein [Clostridium acetobutylicum DSM 1731]
 gi|384459988|ref|YP_005672408.1| putative surface protein, responsible for cell interaction;
           contains cell adhesion domain and ChW-repeats
           [Clostridium acetobutylicum EA 2018]
 gi|15026350|gb|AAK81208.1|AE007823_2 Possible surface protein, responsible for cell interaction;
           contains cell adhesion domain and ChW-repeats
           [Clostridium acetobutylicum ATCC 824]
 gi|325510677|gb|ADZ22313.1| putative surface protein, responsible for cell interaction;
           contains cell adhesion domain and ChW-repeats
           [Clostridium acetobutylicum EA 2018]
 gi|336291611|gb|AEI32745.1| ChW repeat-containing protein [Clostridium acetobutylicum DSM 1731]
          Length = 874

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 162/327 (49%), Gaps = 29/327 (8%)

Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
           +G + +L  + KL +L I   N  TD D+ P+  LTNL  L I  SK+++  +       
Sbjct: 540 YGNVTDLTPISKLSNLKILSLNGDTDIDISPIGNLTNLNQLDIGESKISNINVLNKLNNL 599

Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNL---NRCQLSDDGCEKFSKIGSLKVLNLGF 261
              +L+          +   S LGSL  L L   + C  SD      +K+ +L  ++L +
Sbjct: 600 NYLILDKN------TSIKDFSPLGSLTNLTLLQASYCNFSD--LTPLAKMKNLSRVSLNY 651

Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
           N IT   +  LK  TNL  L L    I D  +  +  L NL+ + LS  QV  + +  L+
Sbjct: 652 NNIT--SIEPLKSSTNLVDLVLSGNKISD--ITPVANLTNLESISLSYNQV--NNISSLA 705

Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
            LT L+S+ L  TGISD  +  L+GL++L  L +    I D  + +L +LT L +L +  
Sbjct: 706 KLTKLKSLMLDHTGISD--ISSLSGLTNLNYLGVQDNNIED--ITSLKNLTNLANLKISQ 761

Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
            +I++  A  + N  NL  L++    +++  +  IK+ + L  L++  N  ++D  +  +
Sbjct: 762 NKISNVDA--IGNLTNLTLLDMNNNQISN--INAIKNSTKLISLSMHHN-KVSD--ISAL 814

Query: 442 SGLTGLVSLNVSNSRITS-AGLRHLNH 467
           S LT L SLN+ N+ I     L+ L+H
Sbjct: 815 SKLTNLESLNLGNNPINDVTPLKDLSH 841


>gi|290989752|ref|XP_002677501.1| predicted protein [Naegleria gruberi]
 gi|284091109|gb|EFC44757.1| predicted protein [Naegleria gruberi]
          Length = 340

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 136/284 (47%), Gaps = 13/284 (4%)

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           ++G+K    L+NL +L +        G  ++ G+ +L  L++   N IT    K +S L 
Sbjct: 45  SKGIKYLGNLMNLSELYINSNEIGDNGAEDISGMKQLTKLDVS-SNDITTKGAKHISKLN 103

Query: 181 NLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
            L SL++  + +   GI Y+   L +LT L++    +      ++S L  L  L++    
Sbjct: 104 KLVSLKMEENMIDAQGIKYITDQLNQLTELDIGSNDLGVLGAKAVSELSQLTSLSIENNN 163

Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
           L ++G    S++ +L  L +  N+I  E    +  L  L +L +    + DEG   ++ L
Sbjct: 164 LLNEGAAYISRLLNLTDLCINSNQIDSEGAKDIIKLKQLTTLFISGNSLLDEGAKLISEL 223

Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
            NL  L++SD ++   G+  +S L  L+++ +    ISD  +  + GL+ L  LN+D   
Sbjct: 224 NNLTVLDISDNELTDEGVEPISKLKQLKTLEIDENQISDEGIESICGLNQLTELNIDYNL 283

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           I+  GL++++           G  I D GA  + +  NL+ L +
Sbjct: 284 ISAEGLSSIS-----------GNEIGDEGAEIIGDLTNLKELTV 316



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 135/294 (45%), Gaps = 33/294 (11%)

Query: 73  GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
           G+ +L +  NL  L  N   +I D G E + G+  LT L    N+ IT +G K  + L  
Sbjct: 47  GIKYLGNLMNLSELYINSN-EIGDNGAEDISGMKQLTKLDVSSND-ITTKGAKHISKLNK 104

Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM----------KPLSGLTNL 182
           LV L +E        +++ +G+  +        N +T+ D+          K +S L+ L
Sbjct: 105 LVSLKMEE------NMIDAQGIKYI----TDQLNQLTELDIGSNDLGVLGAKAVSELSQL 154

Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
            SL I  + + + G AY+  L  LT L +    + +     +  L  L  L ++   L D
Sbjct: 155 TSLSIENNNLLNEGAAYISRLLNLTDLCINSNQIDSEGAKDIIKLKQLTTLFISGNSLLD 214

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           +G +  S++ +L VL++  NE+TDE +  +  L  L++L +D   I DEG+ ++ GL  L
Sbjct: 215 EGAKLISELNNLTVLDISDNELTDEGVEPISKLKQLKTLEIDENQISDEGIESICGLNQL 274

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
             L +    + + GL  +SG             I D     +  L++LK L +D
Sbjct: 275 TELNIDYNLISAEGLSSISG-----------NEIGDEGAEIIGDLTNLKELTVD 317



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 143/315 (45%), Gaps = 18/315 (5%)

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS----GIAYLKGLQKLTLLNLEGCP 215
           L++K  +   DS +K +  L+ LK+L I+ +    S    GI YL  L  L+ L +    
Sbjct: 7   LDMKGVSIFKDSFLKKIGELSQLKTLDIANAAGDRSRFSKGIKYLGNLMNLSELYINSNE 66

Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG- 274
           +     + +S +  L  L+++   ++  G +  SK+  L  L +  N I  + + ++   
Sbjct: 67  IGDNGAEDISGMKQLTKLDVSSNDITTKGAKHISKLNKLVSLKMEENMIDAQGIKYITDQ 126

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           L  L  L++ S  +G  G   ++ L  L  L + +  + + G  ++S L NL  + ++  
Sbjct: 127 LNQLTELDIGSNDLGVLGAKAVSELSQLTSLSIENNNLLNEGAAYISRLLNLTDLCINSN 186

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            I     + +  L  L +L +    + D G   ++ L  LT LD+    +TD G   +  
Sbjct: 187 QIDSEGAKDIIKLKQLTTLFISGNSLLDEGAKLISELNNLTVLDISDNELTDEGVEPISK 246

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC------------NLTDKTLELIS 442
            K L++LEI    ++D G++ I  L+ LT LN+  N              + D+  E+I 
Sbjct: 247 LKQLKTLEIDENQISDEGIESICGLNQLTELNIDYNLISAEGLSSISGNEIGDEGAEIIG 306

Query: 443 GLTGLVSLNV-SNSR 456
            LT L  L V  NSR
Sbjct: 307 DLTNLKELTVDQNSR 321



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 124/272 (45%), Gaps = 39/272 (14%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  +D+S +D+T                           G +H+  L+ L SL     N 
Sbjct: 81  LTKLDVSSNDITTK-------------------------GAKHISKLNKLVSLKMEE-NM 114

Query: 119 ITAQGMKAFAGLIN-LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
           I AQG+K     +N L +LD+        G   +  L +L SL+I+  N + +     +S
Sbjct: 115 IDAQGIKYITDQLNQLTELDIGSNDLGVLGAKAVSELSQLTSLSIENNNLLNEG-AAYIS 173

Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
            L NL  L I+ +++   G   +  L++LT L + G  +       +S L +L  L+++ 
Sbjct: 174 RLLNLTDLCINSNQIDSEGAKDIIKLKQLTTLFISGNSLLDEGAKLISELNNLTVLDISD 233

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
            +L+D+G E  SK+  LK L +  N+I+DE +  + GL  L  LN+D   I  EGL +++
Sbjct: 234 NELTDEGVEPISKLKQLKTLEIDENQISDEGIESICGLNQLTELNIDYNLISAEGLSSIS 293

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
           G            ++G  G   +  LTNL+ +
Sbjct: 294 G-----------NEIGDEGAEIIGDLTNLKEL 314



 Score = 39.7 bits (91), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 7/101 (6%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+ ++L  +D+S +++TD G+  +     L++L+ +   QISD G+E + GL+ LT L+ 
Sbjct: 221 SELNNLTVLDISDNELTDEGVEPISKLKQLKTLEIDEN-QISDEGIESICGLNQLTELNI 279

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
              N I+A+G+ + +G  N +    +    I G L NLK L
Sbjct: 280 DY-NLISAEGLSSISG--NEIG---DEGAEIIGDLTNLKEL 314


>gi|434399050|ref|YP_007133054.1| leucine-rich repeat-containing protein [Stanieria cyanosphaera PCC
           7437]
 gi|428270147|gb|AFZ36088.1| leucine-rich repeat-containing protein [Stanieria cyanosphaera PCC
           7437]
          Length = 842

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 125/424 (29%), Positives = 171/424 (40%), Gaps = 103/424 (24%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           +I D  L+ ++ L+NLTSL+    N +     + F    N +             L  L+
Sbjct: 108 EIDDDNLDRIKSLTNLTSLNLSTPNVLIYG--RTFHYTHNHI-----------TDLKPLR 154

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD------------------ 194
            L KLE L +   N I   D+ PL  LTNL+ L +  S + D                  
Sbjct: 155 SLAKLEKLELS-ANPI--KDISPLQSLTNLRELNLKHSPIEDLTPLKSLINLTSLSVRVY 211

Query: 195 ------------------------SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
                                   + I++L+ L KLT L+L    V       LSAL SL
Sbjct: 212 DAKNLIPLKYLTNLTQLSVRASQLNNISFLQSLTKLTHLSLRSIKVQVNRASDLSALQSL 271

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNL---------------GFNEITDECLVH---- 271
              NL    L+  G    S + SL  L                  F ++T  CL+     
Sbjct: 272 --TNLTHLTLNGYGTIDLSVLQSLTNLTQLTLKGFSINNISLLGAFPKLTSLCLIENEIN 329

Query: 272 ----LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
               L  LT L +L L+   I D  L+ L  L NL  L L+  Q+  S L  L  LTNL 
Sbjct: 330 DFSSLGALTKLTNLILNKNQISD--LIPLQSLTNLTSLALNKNQI--SDLTPLQSLTNLT 385

Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD- 386
           S+ L+   ISD  L  L  L++L SL L+  QI+D  L  L SLT LT L L   +I+D 
Sbjct: 386 SLALNKNQISD--LTPLQSLTNLTSLTLNKNQISD--LTPLQSLTNLTSLCLVKNQISDL 441

Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
           +    L N  NL         +TD     ++ L+ LT L L++N          IS  T 
Sbjct: 442 TPLQSLTNLTNLTYTNSHSTQITD--FTPLQSLTKLTNLTLNKNE---------ISDFTP 490

Query: 447 LVSL 450
           L+SL
Sbjct: 491 LISL 494



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 133/312 (42%), Gaps = 76/312 (24%)

Query: 72  SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
           S L  L+  +NL  L  N    I    L+ L  L+ LT   F  NN I+  G  AF  L 
Sbjct: 263 SDLSALQSLTNLTHLTLNGYGTIDLSVLQSLTNLTQLTLKGFSINN-ISLLG--AFPKLT 319

Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
           +L  ++ E          +L  L KL +L +   N    SD+ PL  LTNL SL ++ ++
Sbjct: 320 SLCLIENEI-----NDFSSLGALTKLTNLIL---NKNQISDLIPLQSLTNLTSLALNKNQ 371

Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
           ++D                          L  L +L +L  L LN+ Q+SD         
Sbjct: 372 ISD--------------------------LTPLQSLTNLTSLALNKNQISD--------- 396

Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD----EGLVNLTGLCNLKCLEL 307
                            L  L+ LTNL SL L+   I D    + L NLT LC +K  ++
Sbjct: 397 -----------------LTPLQSLTNLTSLTLNKNQISDLTPLQSLTNLTSLCLVKN-QI 438

Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
           SD     + L+ L+ LTNL   N   T I+D +   L  L+ L +L L+  +I+D     
Sbjct: 439 SDL----TPLQSLTNLTNLTYTNSHSTQITDFT--PLQSLTKLTNLTLNKNEISD--FTP 490

Query: 368 LTSLTGLTHLDL 379
           L SLT LT L L
Sbjct: 491 LISLTNLTFLYL 502



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 124/263 (47%), Gaps = 25/263 (9%)

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
           D + L  L NL+ L  S S  + + ++ L+ L KLT L+L  C +    LD + +L +L 
Sbjct: 66  DFRLLQCLPNLQQLNGSGS-WSGNDLSVLQSLTKLTTLSLLDCEIDDDNLDRIKSLTNLT 124

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
            LNL+   +   G          +  +   N ITD  L  L+ L  LE L L +  I D 
Sbjct: 125 SLNLSTPNVLIYG----------RTFHYTHNHITD--LKPLRSLAKLEKLELSANPIKD- 171

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
            +  L  L NL+ L L  + +    L  L  L NL S  LS       +L  L  L++L 
Sbjct: 172 -ISPLQSLTNLRELNLKHSPI--EDLTPLKSLINLTS--LSVRVYDAKNLIPLKYLTNLT 226

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA---AYLRNFKNLRSLEICGGGL 408
            L++ A Q+ +  ++ L SLT LTHL L   ++  + A   + L++  NL  L + G G 
Sbjct: 227 QLSVRASQLNN--ISFLQSLTKLTHLSLRSIKVQVNRASDLSALQSLTNLTHLTLNGYGT 284

Query: 409 TDAGV-KHIKDLSSLTLLNLSQN 430
            D  V + + +L+ LTL   S N
Sbjct: 285 IDLSVLQSLTNLTQLTLKGFSIN 307


>gi|356505803|ref|XP_003521679.1| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max]
          Length = 641

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 112/377 (29%), Positives = 187/377 (49%), Gaps = 38/377 (10%)

Query: 69  VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN--AITAQGMK 125
           VTD GL  +   C  L+ L   +C++ISD G++ L        L F   +   +T++ ++
Sbjct: 158 VTDIGLAKIAVGCGKLERLSLKWCLEISDLGIDLL--CKKCLDLKFLDVSYLKVTSESLR 215

Query: 126 AFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESLNIKWCNCITDSDM-KPLSGLTNL 182
           + A L+ L    +  C+ +   GL  L KG   L+++++  C+C++ S +   +SG   L
Sbjct: 216 SIASLLKLEVFVMVGCSLVDDVGLRFLEKGCPLLKAIDVSRCDCVSSSGLISVISGHGGL 275

Query: 183 KSLQ--ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNRCQ 239
           + L      S+++   +  L+ L++L ++ ++G  V+   L ++     SL  L L++C 
Sbjct: 276 EQLDAGYCLSELSAPLVKCLENLKQLRIIRIDGVRVSDFILQTIGTNCKSLVELGLSKCV 335

Query: 240 -LSDDGCEKF-SKIGSLKVLNL---------GFNEITDECLVHLKGLTNLESLNLDSCGI 288
            +++ G  +  S  G LK+L+L           + I D C        +L  L L+SC +
Sbjct: 336 GVTNKGIVQLVSGCGYLKILDLTCCRFISDAAISTIADSC-------PDLVCLKLESCDM 388

Query: 289 GDEGLVNLTGL-CN-LKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKL 344
             E  +   GL C+ LK L+L+D   V    LR+LS  + L  + L   T ISD  L  +
Sbjct: 389 VTENCLYQLGLNCSLLKELDLTDCSGVDDIALRYLSRCSELVRLKLGLCTNISDIGLAHI 448

Query: 345 A-GLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDL-FGARITDSGAAYLRNFKNLRS 400
           A     +  L+L    +I D GLAALTS   GLT+L+L +  RITD G  Y+ +   L  
Sbjct: 449 ACNCPKMTELDLYRCVRIGDDGLAALTSGCKGLTNLNLSYCNRITDRGLEYISHLGELSD 508

Query: 401 LEICG-GGLTDAGVKHI 416
           LE+ G   +T  G+K +
Sbjct: 509 LELRGLSNITSIGIKAV 525



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 133/280 (47%), Gaps = 35/280 (12%)

Query: 79  DCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKL 136
           +C +L  L  + C+ +++ G+  L  G   L  L       I+   +   A    +LV L
Sbjct: 322 NCKSLVELGLSKCVGVTNKGIVQLVSGCGYLKILDLTCCRFISDAAISTIADSCPDLVCL 381

Query: 137 DLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVT 193
            LE C  +    +   GL    L+ L++  C+ + D  ++ LS  + L  L++  C+ ++
Sbjct: 382 KLESCDMVTENCLYQLGLNCSLLKELDLTDCSGVDDIALRYLSRCSELVRLKLGLCTNIS 441

Query: 194 DSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNRC-QLSDDGCEK 247
           D G+A++     K+T L+L  C       D L+AL S    L  LNL+ C +++D G E 
Sbjct: 442 DIGLAHIACNCPKMTELDLYRCVRIGD--DGLAALTSGCKGLTNLNLSYCNRITDRGLEY 499

Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
            S +G          E++D   + L+GL+N+ S+ + +  I  + L +L    +LK  E 
Sbjct: 500 ISHLG----------ELSD---LELRGLSNITSIGIKAVAISCKRLADL----DLKHCE- 541

Query: 308 SDTQVGSSGLRHLSGLT-NLESINLSFTGISDGSLRKLAG 346
              ++  SG   L+  + NL  IN+S+  +SD  L  L G
Sbjct: 542 ---KIDDSGFWALAFYSQNLRQINMSYCIVSDMVLCMLMG 578



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 116/487 (23%), Positives = 195/487 (40%), Gaps = 115/487 (23%)

Query: 82  NLQSLDFNFCIQISDG-------------------------------GLEHL-RGLSNLT 109
           N+++LD + C +I DG                               GLE L R    L 
Sbjct: 64  NIETLDLSMCPRIEDGAVSVVLSQGSASWTRGLRRLVLSRATGLGHVGLEMLIRACPMLE 123

Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNC 167
           ++          +   A +    L +L++++C  +   GL  +  G  KLE L++KWC  
Sbjct: 124 AVDVSHCWGYGDREAAALSCAARLRELNMDKCLGVTDIGLAKIAVGCGKLERLSLKWCLE 183

Query: 168 ITDSDMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL--------------- 211
           I+D  +  L     +LK L +S  KVT   +  +  L KL +  +               
Sbjct: 184 ISDLGIDLLCKKCLDLKFLDVSYLKVTSESLRSIASLLKLEVFVMVGCSLVDDVGLRFLE 243

Query: 212 EGCPVTAA-------CLDS------LSALGSLFYLNLNRC--QLSDDGCEKFSKIGSLKV 256
           +GCP+  A       C+ S      +S  G L  L+   C  +LS    +    +  L++
Sbjct: 244 KGCPLLKAIDVSRCDCVSSSGLISVISGHGGLEQLDAGYCLSELSAPLVKCLENLKQLRI 303

Query: 257 LNLGFNEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLC-------------- 300
           + +    ++D  L  +     +L  L L  C G+ ++G+V L   C              
Sbjct: 304 IRIDGVRVSDFILQTIGTNCKSLVELGLSKCVGVTNKGIVQLVSGCGYLKILDLTCCRFI 363

Query: 301 -------------NLKCLELSDTQVGSSGLRHLSGL--TNLESINLS-FTGISDGSLRKL 344
                        +L CL+L    + +    +  GL  + L+ ++L+  +G+ D +LR L
Sbjct: 364 SDAAISTIADSCPDLVCLKLESCDMVTENCLYQLGLNCSLLKELDLTDCSGVDDIALRYL 423

Query: 345 AGLSSLKSLNLD-ARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL----RNFKN 397
           +  S L  L L     I+D GLA +  +   +T LDL+   RI D G A L    +   N
Sbjct: 424 SRCSELVRLKLGLCTNISDIGLAHIACNCPKMTELDLYRCVRIGDDGLAALTSGCKGLTN 483

Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
           L +L  C   +TD G+++I  L  L+ L L    N+T           G+ ++ +S  R+
Sbjct: 484 L-NLSYC-NRITDRGLEYISHLGELSDLELRGLSNITS---------IGIKAVAISCKRL 532

Query: 458 TSAGLRH 464
               L+H
Sbjct: 533 ADLDLKH 539



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)

Query: 22  EVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKD 79
           +++L     C+ L  L LG    ++D  +  IA     +  +DL     + D GL  L  
Sbjct: 417 DIALRYLSRCSELVRLKLGLCTNISDIGLAHIACNCPKMTELDLYRCVRIGDDGLAALTS 476

Query: 80  -CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLD 137
            C  L +L+ ++C +I+D GLE++  L  L+ L  R  + IT+ G+KA A     L  LD
Sbjct: 477 GCKGLTNLNLSYCNRITDRGLEYISHLGELSDLELRGLSNITSIGIKAVAISCKRLADLD 536

Query: 138 LERCTRI-HGGLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQ----ISCSK 191
           L+ C +I   G   L    + L  +N+ +C     SDM     + NLK LQ    +  SK
Sbjct: 537 LKHCEKIDDSGFWALAFYSQNLRQINMSYC---IVSDMVLCMLMGNLKRLQDAKLVCLSK 593

Query: 192 VTDSGI 197
           V+  G+
Sbjct: 594 VSVKGL 599



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 109/250 (43%), Gaps = 39/250 (15%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
           ++D  +  IA     L+ + L   D VT++ L  L  +CS L+ LD   C  + D  L +
Sbjct: 363 ISDAAISTIADSCPDLVCLKLESCDMVTENCLYQLGLNCSLLKELDLTDCSGVDDIALRY 422

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNL-KGLMKLE 158
           L   S L  L       I+  G+   A     + +LDL RC RI   GL  L  G   L 
Sbjct: 423 LSRCSELVRLKLGLCTNISDIGLAHIACNCPKMTELDLYRCVRIGDDGLAALTSGCKGLT 482

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 217
           +LN+ +CN                        ++TD G+ Y+  L +L+ L L G   +T
Sbjct: 483 NLNLSYCN------------------------RITDRGLEYISHLGELSDLELRGLSNIT 518

Query: 218 AACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIG----SLKVLNLGFNEITDECLVHL 272
           +  + +++ +   L  L+L  C+  DD    F  +     +L+ +N+ +  ++D  L  L
Sbjct: 519 SIGIKAVAISCKRLADLDLKHCEKIDDS--GFWALAFYSQNLRQINMSYCIVSDMVLCML 576

Query: 273 KGLTNLESLN 282
            G  NL+ L 
Sbjct: 577 MG--NLKRLQ 584


>gi|290971190|ref|XP_002668408.1| predicted protein [Naegleria gruberi]
 gi|284081802|gb|EFC35664.1| predicted protein [Naegleria gruberi]
          Length = 286

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 1/159 (0%)

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           ++ +  L  L++S   +G  G +++S +  L S+N+ +  ISD   + ++ +  L  LN+
Sbjct: 129 ISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLILLNI 188

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
            + +I D G   ++ +  LT L++    I D GA ++   K L SL +    ++  G K+
Sbjct: 189 GSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEGAKY 248

Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
           I ++  L LLN+  N  ++D+  + IS +  L SL+ +N
Sbjct: 249 ISEMKQLILLNIGSN-RISDEGAKYISEMKQLTSLHTTN 286



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 88/166 (53%), Gaps = 2/166 (1%)

Query: 305 LELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
           +E S   +GS   ++ +S +  L S+++S   I     + ++ +  L SLN+   QI+D 
Sbjct: 113 VEFSGYLLGSRERVKFISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDK 172

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
           G   ++ +  L  L++   RI D GA Y+   K L SL +    + D G K I ++  LT
Sbjct: 173 GAKYISEMKQLILLNIGSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLT 232

Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
            LN+ +N  ++ +  + IS +  L+ LN+ ++RI+  G ++++  +
Sbjct: 233 SLNVYKN-RISVEGAKYISEMKQLILLNIGSNRISDEGAKYISEMK 277



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 79/160 (49%)

Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
           E +  +  +  L SL++    IG EG   ++ +  L  L +   Q+   G +++S +  L
Sbjct: 124 ERVKFISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQL 183

Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
             +N+    I D   + ++ +  L SLN+   +I D G   ++ +  LT L+++  RI+ 
Sbjct: 184 ILLNIGSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISV 243

Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
            GA Y+   K L  L I    ++D G K+I ++  LT L+
Sbjct: 244 EGAKYISEMKQLILLNIGSNRISDEGAKYISEMKQLTSLH 283



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 80/161 (49%)

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           S +  +  S++  L  L++  N I  E   ++  +  L SLN+    I D+G   ++ + 
Sbjct: 122 SRERVKFISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMK 181

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            L  L +   ++G  G +++S +  L S+N+S   I D   + ++ +  L SLN+   +I
Sbjct: 182 QLILLNIGSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRI 241

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
           +  G   ++ +  L  L++   RI+D GA Y+   K L SL
Sbjct: 242 SVEGAKYISEMKQLILLNIGSNRISDEGAKYISEMKQLTSL 282



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 80/158 (50%)

Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
           + ++  +++LT L++    +       +S +  L  LN+   Q+SD G +  S++  L +
Sbjct: 126 VKFISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLIL 185

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
           LN+G N I DE   ++  +  L SLN+ +  I DEG   ++ +  L  L +   ++   G
Sbjct: 186 LNIGSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEG 245

Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
            +++S +  L  +N+    ISD   + ++ +  L SL+
Sbjct: 246 AKYISEMKQLILLNIGSNRISDEGAKYISEMKQLTSLH 283



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 78/158 (49%)

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           +K +S +  L SL IS + +   G  Y+  +++LT LN+    ++      +S +  L  
Sbjct: 126 VKFISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLIL 185

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           LN+   ++ D+G +  S++  L  LN+  NEI DE    +  +  L SLN+    I  EG
Sbjct: 186 LNIGSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEG 245

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
              ++ +  L  L +   ++   G +++S +  L S++
Sbjct: 246 AKYISEMKQLILLNIGSNRISDEGAKYISEMKQLTSLH 283



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 85/166 (51%), Gaps = 4/166 (2%)

Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
           + + +K  + +  L  LD+      + G   +  + +L SLNI + N I+D   K +S +
Sbjct: 122 SRERVKFISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNI-YYNQISDKGAKYISEM 180

Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
             L  L I  +++ D G  Y+  +++LT LN+    +       +S +  L  LN+ + +
Sbjct: 181 KQLILLNIGSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNR 240

Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDE---CLVHLKGLTNLESLN 282
           +S +G +  S++  L +LN+G N I+DE    +  +K LT+L + N
Sbjct: 241 ISVEGAKYISEMKQLILLNIGSNRISDEGAKYISEMKQLTSLHTTN 286



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 81/154 (52%)

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           +S +  L  L+++   +  +G +  S++  L  LN+ +N+I+D+   ++  +  L  LN+
Sbjct: 129 ISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLILLNI 188

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
            S  IGDEG   ++ +  L  L +S+ ++   G + +S +  L S+N+    IS    + 
Sbjct: 189 GSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEGAKY 248

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
           ++ +  L  LN+ + +I+D G   ++ +  LT L
Sbjct: 249 ISEMKQLILLNIGSNRISDEGAKYISEMKQLTSL 282



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 78/156 (50%), Gaps = 1/156 (0%)

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
           + +L SL+I   N I     K +S +  L SL I  ++++D G  Y+  +++L LLN+  
Sbjct: 132 MKQLTSLDIS-HNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLILLNIGS 190

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
             +       +S +  L  LN++  ++ D+G +  S++  L  LN+  N I+ E   ++ 
Sbjct: 191 NRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEGAKYIS 250

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
            +  L  LN+ S  I DEG   ++ +  L  L  ++
Sbjct: 251 EMKQLILLNIGSNRISDEGAKYISEMKQLTSLHTTN 286


>gi|242057027|ref|XP_002457659.1| hypothetical protein SORBIDRAFT_03g011312 [Sorghum bicolor]
 gi|241929634|gb|EES02779.1| hypothetical protein SORBIDRAFT_03g011312 [Sorghum bicolor]
          Length = 81

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/53 (73%), Positives = 45/53 (84%)

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
           L+K++GLSS+K LNLD RQIT+TGLA+L SLTGLTHLDLFGARI DSG    R
Sbjct: 29  LKKISGLSSMKPLNLDNRQITNTGLASLASLTGLTHLDLFGARIIDSGMNCFR 81


>gi|443688071|gb|ELT90873.1| hypothetical protein CAPTEDRAFT_165456 [Capitella teleta]
          Length = 642

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 122/458 (26%), Positives = 207/458 (45%), Gaps = 64/458 (13%)

Query: 18  RC--LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGL 74
           RC  +T ++  + R+C  LQDL L + P ++D  + ++      ++ +++S S +TD+ L
Sbjct: 171 RCERITSLTFYSIRECRNLQDLNLSECPALDDDSLKMVLEGCKIIIYLNISHSLITDASL 230

Query: 75  IHL-KDCSNLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFAGL 130
             + K C NLQ L   FC++ SD GL++L        L  L     + +T  G+   +  
Sbjct: 231 RSISKYCLNLQYLSLAFCLRYSDKGLQYLANGESAKRLNHLDISGCSQVTPNGLAKLS-- 288

Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
                   E C+ +   L+N      +ES +      ITD + K L  ++ L S  +S  
Sbjct: 289 --------EGCSDVQTLLLN-----DIESFDDACLEAITD-NCKNLRNISFLGSHNLS-- 332

Query: 191 KVTDSGIAYLKGLQKLTLLNLEG-CPVTAACL----DSLSALGSLFYLNLNRCQLSDDGC 245
              D+ +  +   +KL +L ++  C +T         S   L  L+ ++ +R  ++D   
Sbjct: 333 ---DNALKNVATSKKLQMLKIDSNCKITDITFKYIGKSCHELRHLYLVDCHR--ITDLTL 387

Query: 246 EKFSKIGSLKVLNLG-FNEITD---ECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC 300
           +  S+  +L V+NL     ITD     LV       L+ LNL +C  +GD  LVN+   C
Sbjct: 388 KVLSQCRNLTVVNLADCVRITDTGVRYLVESSCGNKLQELNLTNCIRVGDIALVNIHKRC 447

Query: 301 -NLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DA 357
            NL  L L   + +  +G+  L    +L ++++S     D  L  L     LK +NL + 
Sbjct: 448 HNLTYLHLCFCEHISEAGIELLGQTHSLTALDISGCNCGDAGLSSLGNNIRLKDVNLSEC 507

Query: 358 RQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD---AGV 413
             ITD GL       T +  LDL   ++   GA        +++L  C   LT    AG 
Sbjct: 508 SAITDLGLQKFAQQCTEIERLDLSHCQMITDGA--------IKNLAFCCRMLTHLSLAGC 559

Query: 414 KHIKDLS---------SLTLLNLSQNCNLTDKTLELIS 442
           K + DLS          L  L++S + ++TDK+++ + 
Sbjct: 560 KLLTDLSVQYLSGVCHYLLYLDISGSLHITDKSMKYLK 597



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 175/377 (46%), Gaps = 24/377 (6%)

Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN--LKGLMKLESLNIKWC 165
           L  L+ RR   IT+    +     NL  L+L  C  +    +   L+G   +  LNI   
Sbjct: 164 LVHLNLRRCERITSLTFYSIRECRNLQDLNLSECPALDDDSLKMVLEGCKIIIYLNISH- 222

Query: 166 NCITDSDMKPLSGLT-NLKSLQIS-CSKVTDSGIAYL---KGLQKLTLLNLEGC-PVTAA 219
           + ITD+ ++ +S    NL+ L ++ C + +D G+ YL   +  ++L  L++ GC  VT  
Sbjct: 223 SLITDASLRSISKYCLNLQYLSLAFCLRYSDKGLQYLANGESAKRLNHLDISGCSQVTPN 282

Query: 220 CLDSLSA-LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF---NEITDECLVHLKGL 275
            L  LS     +  L LN  +  DD C +        + N+ F   + ++D  L ++   
Sbjct: 283 GLAKLSEGCSDVQTLLLNDIESFDDACLEAITDNCKNLRNISFLGSHNLSDNALKNVATS 342

Query: 276 TNLESLNLDS-CGIGDEGLVNLTGLCN-LKCLELSDT-QVGSSGLRHLSGLTNLESINLS 332
             L+ L +DS C I D     +   C+ L+ L L D  ++    L+ LS   NL  +NL+
Sbjct: 343 KKLQMLKIDSNCKITDITFKYIGKSCHELRHLYLVDCHRITDLTLKVLSQCRNLTVVNLA 402

Query: 333 -FTGISDGSLRKLAGLS---SLKSLNL-DARQITDTGLAAL-TSLTGLTHLDL-FGARIT 385
               I+D  +R L   S    L+ LNL +  ++ D  L  +      LT+L L F   I+
Sbjct: 403 DCVRITDTGVRYLVESSCGNKLQELNLTNCIRVGDIALVNIHKRCHNLTYLHLCFCEHIS 462

Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGL 444
           ++G   L    +L +L+I G    DAG+  + +   L  +NLS+   +TD  L+      
Sbjct: 463 EAGIELLGQTHSLTALDISGCNCGDAGLSSLGNNIRLKDVNLSECSAITDLGLQKFAQQC 522

Query: 445 TGLVSLNVSNSRITSAG 461
           T +  L++S+ ++ + G
Sbjct: 523 TEIERLDLSHCQMITDG 539



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 107/218 (49%), Gaps = 10/218 (4%)

Query: 52  IASQGSSLLSVDLSGS-DVTDSGLIHLKD--CSN-LQSLDFNFCIQISDGGLEHL-RGLS 106
           + SQ  +L  V+L+    +TD+G+ +L +  C N LQ L+   CI++ D  L ++ +   
Sbjct: 389 VLSQCRNLTVVNLADCVRITDTGVRYLVESSCGNKLQELNLTNCIRVGDIALVNIHKRCH 448

Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
           NLT L       I+  G++      +L  LD+  C     GL +L   ++L+ +N+  C+
Sbjct: 449 NLTYLHLCFCEHISEAGIELLGQTHSLTALDISGCNCGDAGLSSLGNNIRLKDVNLSECS 508

Query: 167 CITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKG-LQKLTLLNLEGCP-VTAACLD 222
            ITD  ++  +   T ++ L +S C  +TD  I  L    + LT L+L GC  +T   + 
Sbjct: 509 AITDLGLQKFAQQCTEIERLDLSHCQMITDGAIKNLAFCCRMLTHLSLAGCKLLTDLSVQ 568

Query: 223 SLSAL-GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
            LS +   L YL+++      D   K+ K G  K+  L
Sbjct: 569 YLSGVCHYLLYLDISGSLHITDKSMKYLKKGCKKLQTL 606


>gi|440802726|gb|ELR23655.1| leucine rich repeat domain containing protein [Acanthamoeba
           castellanii str. Neff]
          Length = 634

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 119/376 (31%), Positives = 181/376 (48%), Gaps = 72/376 (19%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSL-----SFRRNNAITAQGMKAFAGLINLVK 135
             LQ+L+ ++C  I++ GL++LRGL++LTSL     SFR    +T++G+K+     +L  
Sbjct: 280 PQLQTLNLSYCPNITNHGLKYLRGLTSLTSLDLCSPSFR----VTSEGLKSLPS--SLRS 333

Query: 136 LDLERCTRI-HGGLVNLKGL-MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKV 192
           LD+    ++   G+  L+ +   L+ LNI  CN +T+  M+ L     L+++ +S C  +
Sbjct: 334 LDISYMDKLTDEGIKALRAVCPDLQVLNISKCNKVTNDGMRFLPA--KLRTIFLSHCYNI 391

Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
           TD GIA L               V    L++          + +   L+DDG     +  
Sbjct: 392 TDEGIANLA--------------VAVPLLEN---------FHFSYSSLTDDGVRHLPR-- 426

Query: 253 SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-T 310
           +LK LNL F  ++T+E + HL    +   L+  S  I DEGL  L    ++  L+LS   
Sbjct: 427 ALKALNLSFCPKLTNEGMRHLPPHLHTLLLSY-SYKITDEGLRALPP--SIATLKLSRFF 483

Query: 311 QVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL 368
           ++   GL+HL     L S++LS    +SD  + +L    +L  LNL     ITD G+A L
Sbjct: 484 EITDDGLQHLP--PALRSLDLSLCDRVSDQGMSRLP--PTLAELNLSRCDGITDAGVAQL 539

Query: 369 TSLTGLTHLDL-FGARITDSGAAYLRNF-KNLRSL------EICGGGLTDAGVKHIKDLS 420
                L  LDL F   +TD   A LR+  K L SL      EI G  L D  +       
Sbjct: 540 PR--SLGKLDLSFTKHVTD---ACLRSLPKALTSLNLSSCPEITGEALADLPL------- 587

Query: 421 SLTLLNLSQNCNLTDK 436
           SL+ L LS    +TDK
Sbjct: 588 SLSHLFLSHCEKVTDK 603



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 153/325 (47%), Gaps = 46/325 (14%)

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS---KVTDSGIAYLKGLQKLTLL 209
              +L++LN+ +C  IT+  +K L GLT+L SL + CS   +VT  G             
Sbjct: 278 PFPQLQTLNLSYCPNITNHGLKYLRGLTSLTSLDL-CSPSFRVTSEG------------- 323

Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI-GSLKVLNLGF-NEITDE 267
            L+  P +   LD       + Y++    +L+D+G +    +   L+VLN+   N++T++
Sbjct: 324 -LKSLPSSLRSLD-------ISYMD----KLTDEGIKALRAVCPDLQVLNISKCNKVTND 371

Query: 268 CLVHLKGLTNLESLNLDSC-GIGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
            +  L     L ++ L  C  I DEG+ NL   +  L+    S + +   G+RHL     
Sbjct: 372 GMRFLPA--KLRTIFLSHCYNITDEGIANLAVAVPLLENFHFSYSSLTDDGVRHLP--RA 427

Query: 326 LESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
           L+++NLSF   +++  +R L        L+  + +ITD GL AL        L  F   I
Sbjct: 428 LKALNLSFCPKLTNEGMRHLPPHLHTLLLSY-SYKITDEGLRALPPSIATLKLSRF-FEI 485

Query: 385 TDSGAAYLRNFKNLRSLEIC-GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
           TD G  +L     LRSL++     ++D G+  +    +L  LNLS+   +TD  +  +  
Sbjct: 486 TDDGLQHLP--PALRSLDLSLCDRVSDQGMSRLP--PTLAELNLSRCDGITDAGVAQLPR 541

Query: 444 LTGLVSLNVSNSRITSAGLRHLNHA 468
             G + L+ +   +T A LR L  A
Sbjct: 542 SLGKLDLSFTK-HVTDACLRSLPKA 565



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 134/274 (48%), Gaps = 24/274 (8%)

Query: 28  FRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLD 87
           F    L+ + L     + D+ +  +A     L +   S S +TD G+ HL     L++L+
Sbjct: 375 FLPAKLRTIFLSHCYNITDEGIANLAVAVPLLENFHFSYSSLTDDGVRHLPRA--LKALN 432

Query: 88  FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HG 146
            +FC ++++ G+ HL    +   LS+  +  IT +G++A    I  +K  L R   I   
Sbjct: 433 LSFCPKLTNEGMRHLPPHLHTLLLSY--SYKITDEGLRALPPSIATLK--LSRFFEITDD 488

Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL-KGLQ 204
           GL +L     L SL++  C+ ++D  M  L     L  L +S C  +TD+G+A L + L 
Sbjct: 489 GLQHLPP--ALRSLDLSLCDRVSDQGMSRLP--PTLAELNLSRCDGITDAGVAQLPRSLG 544

Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG-SLKVLNLGFNE 263
           KL L   +   VT ACL SL    +L  LNL+ C   +   E  + +  SL  L L   E
Sbjct: 545 KLDLSFTKH--VTDACLRSLPK--ALTSLNLSSC--PEITGEALADLPLSLSHLFLSHCE 598

Query: 264 -ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVN 295
            +TD+    L     LE+L++ SC G+ ++ L++
Sbjct: 599 KVTDKIFTSLP--RPLETLDISSCSGVVEKYLLD 630


>gi|384252696|gb|EIE26172.1| RNI-like protein [Coccomyxa subellipsoidea C-169]
          Length = 663

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 156/344 (45%), Gaps = 26/344 (7%)

Query: 89  NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG---MKAFAGLINLVKLDLERCTRIH 145
            F I   D  L  L GLS L  L F   NA+   G   +   + L  L +L++      +
Sbjct: 183 RFLITERDAVL--LGGLSRLQHLQF---NAVAFDGRTLISKLSSLQGLRQLEMANVVGAY 237

Query: 146 G--GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTD---SGIAY 199
              G   LK L KL SL ++  N    + + P+  L+ L+SLQ +S ++       G+  
Sbjct: 238 PAEGDAFLKSLTKLSSLRMR--NDSATAKLPPMHCLSELRSLQELSLTEHLHLLLPGLTN 295

Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSKIGSLKVLN 258
           L  L  L  L L    VT   L    AL  L  L++ +  +++D G    S +  L  L+
Sbjct: 296 LSALTDLRQLRLVKVGVTNGVLRCAGALTKLQSLHIPDAFRVTDTGLHHLSSLTGLTHLD 355

Query: 259 LGF------NEITDECLVHLKGLTNLESLNLD-SCGIGDEGLVNLTGLCNLKCLELSDTQ 311
                     +IT+  +  L  LTNL SLNL     +  EGL  L     L CL+LS   
Sbjct: 356 FCSPSHRRDEDITNAGVAALSALTNLRSLNLAGHSEVTAEGLAFLADATALTCLDLSGLP 415

Query: 312 VGSSG-LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
           +G +G +  L+ LTNL S+ L  T +S+  +++L  L++L SL L    I D   AAL  
Sbjct: 416 LGPTGGVDFLASLTNLRSLCLQRTQLSNEHVQQLGSLTALTSLGLAWCAIDDEAAAALAP 475

Query: 371 LTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV 413
           LT L  LD+    +T++G   L R   +L    + G   T  G+
Sbjct: 476 LTKLADLDVRYCPMTNAGLCQLSRAMPDLAIFAVEGCPATSIGI 519



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 102/194 (52%), Gaps = 22/194 (11%)

Query: 272 LKGLTNLESLNL--DSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLES 328
           LK LT L SL +  DS       +  L+ L +L+ L L++   +   GL +LS LT+L  
Sbjct: 245 LKSLTKLSSLRMRNDSATAKLPPMHCLSELRSLQELSLTEHLHLLLPGLTNLSALTDLRQ 304

Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDS 387
           + L   G+++G LR    L+ L+SL++ DA ++TDTGL  L+SLTGLTHLD         
Sbjct: 305 LRLVKVGVTNGVLRCAGALTKLQSLHIPDAFRVTDTGLHHLSSLTGLTHLDF-------C 357

Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
             ++ R+             +T+AGV  +  L++L  LNL+ +  +T + L  ++  T L
Sbjct: 358 SPSHRRD-----------EDITNAGVAALSALTNLRSLNLAGHSEVTAEGLAFLADATAL 406

Query: 448 VSLNVSNSRITSAG 461
             L++S   +   G
Sbjct: 407 TCLDLSGLPLGPTG 420



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 38/184 (20%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQ-------ISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           VTD+GL HL   + L  LDF  C         I++ G+  L  L+NL SL+   ++ +TA
Sbjct: 337 VTDTGLHHLSSLTGLTHLDF--CSPSHRRDEDITNAGVAALSALTNLRSLNLAGHSEVTA 394

Query: 122 QGMKAF--------------------------AGLINLVKLDLERCTRIHGGLVNLKGLM 155
           +G+ AF                          A L NL  L L+R    +  +  L  L 
Sbjct: 395 EGL-AFLADATALTCLDLSGLPLGPTGGVDFLASLTNLRSLCLQRTQLSNEHVQQLGSLT 453

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGC 214
            L SL + WC  I D     L+ LT L  L +    +T++G+  L + +  L +  +EGC
Sbjct: 454 ALTSLGLAWC-AIDDEAAAALAPLTKLADLDVRYCPMTNAGLCQLSRAMPDLAIFAVEGC 512

Query: 215 PVTA 218
           P T+
Sbjct: 513 PATS 516



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 6/176 (3%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF-----RRNNAITAQGMKAFAGLINLVK 135
           + LQSL      +++D GL HL  L+ LT L F     RR+  IT  G+ A + L NL  
Sbjct: 324 TKLQSLHIPDAFRVTDTGLHHLSSLTGLTHLDFCSPSHRRDEDITNAGVAALSALTNLRS 383

Query: 136 LDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
           L+L   + +   GL  L     L  L++          +  L+ LTNL+SL +  +++++
Sbjct: 384 LNLAGHSEVTAEGLAFLADATALTCLDLSGLPLGPTGGVDFLASLTNLRSLCLQRTQLSN 443

Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
             +  L  L  LT L L  C +      +L+ L  L  L++  C +++ G  + S+
Sbjct: 444 EHVQQLGSLTALTSLGLAWCAIDDEAAAALAPLTKLADLDVRYCPMTNAGLCQLSR 499



 Score = 39.3 bits (90), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 90/196 (45%), Gaps = 22/196 (11%)

Query: 288 IGDEGLVNLTGLCNLKCLELS----DTQVGSSGLRHLSGLTNLESINL--SFTGISDGSL 341
           I +   V L GL  L+ L+ +    D +   S L  L GL  LE  N+  ++    D  L
Sbjct: 186 ITERDAVLLGGLSRLQHLQFNAVAFDGRTLISKLSSLQGLRQLEMANVVGAYPAEGDAFL 245

Query: 342 RKLAGLSSLKSLN--LDARQITDTGLAALTSLTGLT---HLDLFGARITDSGAAYLRNFK 396
           + L  LSSL+  N    A+      L+ L SL  L+   HL L    +T+     L    
Sbjct: 246 KSLTKLSSLRMRNDSATAKLPPMHCLSELRSLQELSLTEHLHLLLPGLTN-----LSALT 300

Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV---S 453
           +LR L +   G+T+  ++    L+ L  L++     +TD  L  +S LTGL  L+    S
Sbjct: 301 DLRQLRLVKVGVTNGVLRCAGALTKLQSLHIPDAFRVTDTGLHHLSSLTGLTHLDFCSPS 360

Query: 454 NSR---ITSAGLRHLN 466
           + R   IT+AG+  L+
Sbjct: 361 HRRDEDITNAGVAALS 376


>gi|405954703|gb|EKC22070.1| F-box/LRR-repeat protein 14 [Crassostrea gigas]
          Length = 403

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 95/299 (31%), Positives = 159/299 (53%), Gaps = 36/299 (12%)

Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLF--------YLNLNRC-QLSDDGCEKFSK-I 251
           G+  +  LNL GC V         ALG  F         LNL+ C Q++D+   + ++ +
Sbjct: 95  GIPNVETLNLSGCFVVTD-----HALGHAFSQDLPCMTVLNLSLCKQITDNSLGRIAQYL 149

Query: 252 GSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTG--------LC 300
            +L+VL LG  + IT+  L+ +  GL  L++LNL SC  I D G+ +L G          
Sbjct: 150 TNLEVLELGGCSNITNTGLLLIAWGLRKLKTLNLRSCRHISDVGIGHLAGNSPNAAAGTL 209

Query: 301 NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA 357
            ++ L L D Q +    L+HLS GL NL+++NLSF G ++D  ++ L+ + +++ +NL +
Sbjct: 210 EIENLGLQDCQKLTDLSLKHLSCGLVNLKTLNLSFCGSVTDSGVKFLSKMQTMREINLRS 269

Query: 358 -RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV 413
              I+D GL  L    + +T LD+ F  ++ D G  +L +   +LR++ +    ++D G+
Sbjct: 270 CDNISDVGLGYLAEGGSRITSLDVSFCDKVGDEGLVHLAQGLFSLRNISLSACNISDEGL 329

Query: 414 KH-IKDLSSLTLLNLSQNCNLTDKTLELISG-LTGLVSLNVSN-SRITSAGLRHLNHAR 469
              +  L  +T LN+ Q   +TDK L LI+  L  L S+++   +RIT+ GL  +   R
Sbjct: 330 NRLVNTLQDITTLNIGQCVRITDKGLSLIADHLKNLQSIDLYGCTRITTVGLERIMQLR 388



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 116/397 (29%), Positives = 192/397 (48%), Gaps = 44/397 (11%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
             +L++  S   V D G +  + C   + + +N C+        HLR          R N
Sbjct: 17  PEVLTIIFSYLSVRDKGRVA-QVCVKWRDVAYNRCVWRGVCAKLHLR----------RAN 65

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
            ++    +K   G+  +  L L+R  R       + G+  +E+LN+  C  +TD  +   
Sbjct: 66  PSLFPSLVKR--GIKRVQILSLKRSLRD-----VVVGIPNVETLNLSGCFVVTDHALGHA 118

Query: 177 --SGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCP--VTAACLDSLSALGSL 230
               L  +  L +S C ++TD+ +  + + L  L +L L GC        L     L  L
Sbjct: 119 FSQDLPCMTVLNLSLCKQITDNSLGRIAQYLTNLEVLELGGCSNITNTGLLLIAWGLRKL 178

Query: 231 FYLNLNRCQ-LSDDGCEKF------SKIGSLKVLNLGFNE---ITDECLVHLK-GLTNLE 279
             LNL  C+ +SD G          +  G+L++ NLG  +   +TD  L HL  GL NL+
Sbjct: 179 KTLNLRSCRHISDVGIGHLAGNSPNAAAGTLEIENLGLQDCQKLTDLSLKHLSCGLVNLK 238

Query: 280 SLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLS-GLTNLESINLSFT-G 335
           +LNL  CG + D G+  L+ +  ++ + L S   +   GL +L+ G + + S+++SF   
Sbjct: 239 TLNLSFCGSVTDSGVKFLSKMQTMREINLRSCDNISDVGLGYLAEGGSRITSLDVSFCDK 298

Query: 336 ISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL 392
           + D  L  LA GL SL++++L A  I+D GL  L  +L  +T L++    RITD G + +
Sbjct: 299 VGDEGLVHLAQGLFSLRNISLSACNISDEGLNRLVNTLQDITTLNIGQCVRITDKGLSLI 358

Query: 393 RN-FKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
            +  KNL+S+++ G   +T  G++ I  L  LT LNL
Sbjct: 359 ADHLKNLQSIDLYGCTRITTVGLERIMQLRGLTTLNL 395



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 141/279 (50%), Gaps = 42/279 (15%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
           + D  +  IA   ++L  ++L G S++T++GL+ +      L++L+   C  ISD G+ H
Sbjct: 137 ITDNSLGRIAQYLTNLEVLELGGCSNITNTGLLLIAWGLRKLKTLNLRSCRHISDVGIGH 196

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK----GLMKL 157
           L G S                   A AG + +  L L+ C ++    ++LK    GL+ L
Sbjct: 197 LAGNSP-----------------NAAAGTLEIENLGLQDCQKLTD--LSLKHLSCGLVNL 237

Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP 215
           ++LN+ +C  +TDS +K LS +  ++ + + SC  ++D G+ YL +G  ++T L++  C 
Sbjct: 238 KTLNLSFCGSVTDSGVKFLSKMQTMREINLRSCDNISDVGLGYLAEGGSRITSLDVSFCD 297

Query: 216 VTA--ACLDSLSALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLG-FNEITDECLV- 270
                  +     L SL  ++L+ C +SD+G  +  + +  +  LN+G    ITD+ L  
Sbjct: 298 KVGDEGLVHLAQGLFSLRNISLSACNISDEGLNRLVNTLQDITTLNIGQCVRITDKGLSL 357

Query: 271 ---HLKGLTNLESLNLDSC----GIGDEGLVNLTGLCNL 302
              HLK   NL+S++L  C     +G E ++ L GL  L
Sbjct: 358 IADHLK---NLQSIDLYGCTRITTVGLERIMQLRGLTTL 393


>gi|431892162|gb|ELK02609.1| F-box/LRR-repeat protein 14 [Pteropus alecto]
          Length = 412

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 160/324 (49%), Gaps = 41/324 (12%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
           RG+  +  LS RR+ +   QGM       N+  L+L  C  +     G   ++ +  L +
Sbjct: 68  RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEISSLRA 121

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
           LN+  C  ITDS +  ++    LK L++     CS +T++G+  +  GLQ+L  LNL  C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179

Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-K 273
                    LS +G      + R   + +GC     +G  ++      ++TD  L H+ +
Sbjct: 180 R-------HLSDVGIGHLAGMTRS--AAEGC-----LGLEQLTLQDCQKLTDLSLKHISR 225

Query: 274 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSGLTNLESINL 331
           GLT L  LNL  C GI D GL++L+ + +L+ L L S   +  +G+ HL+    + S+ L
Sbjct: 226 GLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLA----MGSLRL 281

Query: 332 SFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFG-ARITDS 387
           S   +SD  + R +  +  L++LN+    +ITD GL  +   L+ LT +DL+G  RIT  
Sbjct: 282 SGLDVSDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKR 341

Query: 388 GAAYLRNFKNLRSLEICGGGLTDA 411
           G   +     L+ L +    +TD+
Sbjct: 342 GLERITQLPCLKVLNLGLWQMTDS 365



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 153/306 (50%), Gaps = 45/306 (14%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
           ++  +N++SL+ + C  ++D GL H  ++ +S+L +L+      IT   +   A  +  L
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEISSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
             L+L  C+ I   G L+   GL +L+SLN++ C  ++D  +  L+G+T         L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205

Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
            L +  C K+TD  + ++ +GL  L LLNL  C  ++ A L  LS +GSL  LNL  C  
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265

Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLT 297
           +SD G    + +GSL++  L   +++D+ +  + + +  L +LN+  C  I D+GL  + 
Sbjct: 266 ISDTGIMHLA-MGSLRLSGL---DVSDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIA 321

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
                                HLS LT ++      T I+   L ++  L  LK LNL  
Sbjct: 322 --------------------EHLSQLTGIDLYGC--TRITKRGLERITQLPCLKVLNLGL 359

Query: 358 RQITDT 363
            Q+TD+
Sbjct: 360 WQMTDS 365



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 151/314 (48%), Gaps = 73/314 (23%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           + G+ N++SL +S C  +TD+G+  A+++ +  L  LNL  C                  
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGHAFVQEISSLRALNLSLCK----------------- 128

Query: 233 LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GI 288
                 Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  +
Sbjct: 129 ------QITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHL 182

Query: 289 GDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-IS 337
            D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G IS
Sbjct: 183 SDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGIS 242

Query: 338 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
           D  L  L+ + SL+SLNL +   I+DTG+  L                            
Sbjct: 243 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLA--------------------------- 275

Query: 397 NLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN 454
            + SL + G  ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  +++  
Sbjct: 276 -MGSLRLSGLDVSDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYG 334

Query: 455 -SRITSAGLRHLNH 467
            +RIT  GL  +  
Sbjct: 335 CTRITKRGLERITQ 348



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 89/201 (44%), Gaps = 54/201 (26%)

Query: 69  VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           +TD  L H+ +  + L+ L+ +FC  ISD GL HL  + +L SL+ R  + I+  G+   
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274

Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
           A                        G ++L  L++       D   + +  +  L++L I
Sbjct: 275 A-----------------------MGSLRLSGLDVS-----DDGINRMVRQMHGLRTLNI 306

Query: 188 -SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
             C ++TD G+  + + L +LT ++L GC                        +++  G 
Sbjct: 307 GQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITKRGL 343

Query: 246 EKFSKIGSLKVLNLGFNEITD 266
           E+ +++  LKVLNLG  ++TD
Sbjct: 344 ERITQLPCLKVLNLGLWQMTD 364



 Score = 39.7 bits (91), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 11/144 (7%)

Query: 56  GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFR 114
           G  LL++   G  ++D+GL+HL    +L+SL+   C  ISD G+ HL  G   L+ L   
Sbjct: 229 GLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLD-- 285

Query: 115 RNNAITAQGM-KAFAGLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDS 171
               ++  G+ +    +  L  L++ +C RI    + L  + L +L  +++  C  IT  
Sbjct: 286 ----VSDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKR 341

Query: 172 DMKPLSGLTNLKSLQISCSKVTDS 195
            ++ ++ L  LK L +   ++TDS
Sbjct: 342 GLERITQLPCLKVLNLGLWQMTDS 365


>gi|325111037|ref|YP_004272105.1| hypothetical protein Plabr_4512 [Planctomyces brasiliensis DSM
           5305]
 gi|324971305|gb|ADY62083.1| hypothetical protein Plabr_4512 [Planctomyces brasiliensis DSM
           5305]
          Length = 407

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 148/306 (48%), Gaps = 31/306 (10%)

Query: 184 SLQISCSKV--TDSGIAYLKGLQKLTLL-NLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           +L++ C +    D  +  LK  +K T++ +L    ++   LDSL     L  L L   ++
Sbjct: 75  TLELDCRRAHFPDGSLELLKVFEKQTVIVDLSLSNISDDSLDSLKDFNRLEVLILAHTRI 134

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL-TGL 299
           +    ++ S I SL  L+L   E  DE +  L  L  L+ L + +  + ++G   L T +
Sbjct: 135 TGSRLDQLSSITSLHTLDLTAIEFDDESVPSLASLRQLQRLKVPTSKLSEDGFALLCTRM 194

Query: 300 CNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDA 357
             L+ L+LS  + V +S L HL+ +  L  + +SF   I D ++  LAGL +LK L+L+ 
Sbjct: 195 PFLRSLDLSGRRGVANSWLTHLAKMPRLNVLGVSFAKNIDDDAIPLLAGLPALKWLSLEG 254

Query: 358 RQITDTGLAALTSLTGLTHLDL----FGARITDSGAAYLRNF--------KNLRSLEICG 405
             IT    AAL +LT L  L L    F A  T    + LR+         KN+ SL+   
Sbjct: 255 TSITGMFPAALGNLTNLDTLSLAHCTFNAPQTLESLSKLRSLKQLNLNDCKNITSLKFLR 314

Query: 406 G------------GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
           G             LTDA +K ++    L  ++L++ C +  +T+  IS L  L ++++S
Sbjct: 315 GMSHLEAIGLKNTNLTDAILKELQYCLQLKYVDLTR-CRIGKETISTISQLKLLQTISLS 373

Query: 454 NSRITS 459
            ++I S
Sbjct: 374 GTQIDS 379



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 146/324 (45%), Gaps = 41/324 (12%)

Query: 26  EAFRDCALQDL-CL-GQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNL 83
           E++RD +  +L C    +P  + + + V   Q    + VDLS S+++D  L  LKD + L
Sbjct: 68  ESYRDASTLELDCRRAHFPDGSLELLKVFEKQT---VIVDLSLSNISDDSLDSLKDFNRL 124

Query: 84  QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA--QGMKAFAGLINLVKLDLER- 140
           + L      +I+   L+ L  +++L +L      AI    + + + A L  L +L +   
Sbjct: 125 EVLILAHT-RITGSRLDQLSSITSLHTLDL---TAIEFDDESVPSLASLRQLQRLKVPTS 180

Query: 141 ----------CTRI---------------HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
                     CTR+               +  L +L  + +L  L + +   I D  +  
Sbjct: 181 KLSEDGFALLCTRMPFLRSLDLSGRRGVANSWLTHLAKMPRLNVLGVSFAKNIDDDAIPL 240

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-CLDSLSALGSLFYLN 234
           L+GL  LK L +  + +T    A L  L  L  L+L  C   A   L+SLS L SL  LN
Sbjct: 241 LAGLPALKWLSLEGTSITGMFPAALGNLTNLDTLSLAHCTFNAPQTLESLSKLRSLKQLN 300

Query: 235 LNRCQLSDDGCEKFSK-IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           LN C+  +    KF + +  L+ + L    +TD  L  L+    L+ ++L  C IG E +
Sbjct: 301 LNDCK--NITSLKFLRGMSHLEAIGLKNTNLTDAILKELQYCLQLKYVDLTRCRIGKETI 358

Query: 294 VNLTGLCNLKCLELSDTQVGSSGL 317
             ++ L  L+ + LS TQ+ S  +
Sbjct: 359 STISQLKLLQTISLSGTQIDSDNI 382



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 97/218 (44%), Gaps = 29/218 (13%)

Query: 59  LLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           L S+DLSG   V +S L HL     L  L  +F   I D  +  L GL  L  LS     
Sbjct: 197 LRSLDLSGRRGVANSWLTHLAKMPRLNVLGVSFAKNIDDDAIPLLAGLPALKWLSLE-GT 255

Query: 118 AITAQGMKAFAGLINLVKLDLERCT-RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           +IT     A   L NL  L L  CT      L +L  L  L+ LN+  C  IT   +K L
Sbjct: 256 SITGMFPAALGNLTNLDTLSLAHCTFNAPQTLESLSKLRSLKQLNLNDCKNITS--LKFL 313

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
            G+++L+++ +  + +TD   A LK LQ               CL        L Y++L 
Sbjct: 314 RGMSHLEAIGLKNTNLTD---AILKELQ--------------YCL-------QLKYVDLT 349

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
           RC++  +     S++  L+ ++L   +I  + ++ ++ 
Sbjct: 350 RCRIGKETISTISQLKLLQTISLSGTQIDSDNIIPIRS 387


>gi|290996875|ref|XP_002681007.1| leucine-rich repeat family protein [Naegleria gruberi]
 gi|284094630|gb|EFC48263.1| leucine-rich repeat family protein [Naegleria gruberi]
          Length = 398

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 139/307 (45%), Gaps = 28/307 (9%)

Query: 162 IKWCNCIT-DSDMKPLSGLTNLKSLQISCS--------------KVTDSGIAYL------ 200
           ++ C C+T D D++P+S ++ L  L IS +              K+ + G  ++      
Sbjct: 84  LELCECLTGDKDIRPISRMSQLTKLNISKNAKYHLSDIFDMKQLKILEIGENFIGDEQAE 143

Query: 201 ---KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
                L++LT+L +    + +  +  LS L  L  L+L+    +D    + +K+  LK L
Sbjct: 144 LLSNHLKQLTILRINNNLIHSQGVKHLSKLDQLTELDLSGNAFNDTIGSEIAKMEQLKTL 203

Query: 258 N---LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
           +   L  + +          L  L SL++ +  IGDEG   ++ L  L  L +   ++G 
Sbjct: 204 HVNKLARHRMGSRLGSQFGNLFQLTSLSISNNYIGDEGANEISNLTQLTELYVHGAEIGY 263

Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
            G R LS L  L  +++S   I D  +R    LS L  L +   +I D G   ++ +  L
Sbjct: 264 RGARSLSVLHQLTKLDISTNHIGDEGVRLFKQLSKLTELVVFNNRIGDVGAQLISEIPQL 323

Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
           T L +   +I + GA  +     L+ L I G  + D G K + +++ L  + +  N N++
Sbjct: 324 TSLVVSSNQIGNEGAKSISQMSKLKYLSINGNQIGDQGAKLLSEMNQLRRIEVYGN-NIS 382

Query: 435 DKTLELI 441
           ++  +L 
Sbjct: 383 NEIFQLF 389


>gi|428320680|ref|YP_007118562.1| leucine-rich repeat-containing protein [Oscillatoria nigro-viridis
           PCC 7112]
 gi|428244360|gb|AFZ10146.1| leucine-rich repeat-containing protein [Oscillatoria nigro-viridis
           PCC 7112]
          Length = 360

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 92/260 (35%), Positives = 134/260 (51%), Gaps = 20/260 (7%)

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           SD+ PL  LTNLK+L I  +++ D  I+ L  L  LT+L L+   ++   +  L+ L  L
Sbjct: 104 SDIAPLQSLTNLKTLVIDVNQILD--ISPLSSLINLTVLVLDTNQISD--ISPLAGLTDL 159

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
             L L   ++SD    K   + +L  L L  N+I+D  +  L+ LT L++L L +  I D
Sbjct: 160 TALVLFDNKISDITPVK--NLTNLNALILYNNQISD--IAPLENLTELQTLYLYNNKISD 215

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
             +  L  L NL  L L   ++  S L  L  LTNL  + L    ISD S   L  L++L
Sbjct: 216 --ITPLASLKNLTTLFLFGNEI--SDLTPLEALTNLNKLVLFQNKISDIS--PLTSLTNL 269

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
             LNL   QI+D  ++ L SLT LT L LF   I+DS A  L+   NL  L++    ++D
Sbjct: 270 IELNLGNNQISD--ISPLKSLTNLTELYLFNNPISDSSA--LQALNNLFLLDLYNNQISD 325

Query: 411 AGVKHIKDLSSLTLLNLSQN 430
             +  ++ L  LT L+L  N
Sbjct: 326 --ISSLESLHKLTTLDLRGN 343


>gi|330806226|ref|XP_003291073.1| hypothetical protein DICPUDRAFT_98891 [Dictyostelium purpureum]
 gi|325078753|gb|EGC32387.1| hypothetical protein DICPUDRAFT_98891 [Dictyostelium purpureum]
          Length = 793

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 151/343 (44%), Gaps = 69/343 (20%)

Query: 2   LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQ--DLCLGQYPGVNDKWMDVIAS-QGSS 58
           LP ++ Q+I       + L+  +L  FR+C L   +LC  + P ++D W+++      S+
Sbjct: 294 LPDELCQKIIPLFQRRKILSSRTLSLFRNCKLTRLELCGKEVP-ISDDWLNITKGLMAST 352

Query: 59  LLSVDLS-GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           +  V++S  S +TD G+  L    NLQSLD ++  +I   GL  L               
Sbjct: 353 ITYVNISKNSLLTDQGIASLSHLRNLQSLDISYVDKIDGSGLAAL--------------- 397

Query: 118 AITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
                     AG + L KL +E C   ++      L  L  L SL    CN +TD D + 
Sbjct: 398 --------VDAG-VPLQKLQMEGCLSLKLPQLFTTLSKLKTLSSLYAGACN-MTDDDCQQ 447

Query: 176 LSGLTNLKSLQISCSKV-TDSGIAYLKGLQKLTLLNLEGCPVTAA----CLDSLSALGSL 230
           LS L  L  L +  + V T+ G+ ++  L +LT L++ G     A    CL  L  L SL
Sbjct: 448 LSQLQTLTHLDVCRNAVITNRGLQFICNLSRLTELDIGGINQLDAQGIKCLLQLPHLESL 507

Query: 231 FYLNLNRCQLSDDGC-----------------EKFSKIGSLKVLNLGF---------NEI 264
              N   C + DD C                   FS +G+  + NL +           I
Sbjct: 508 AAEN---CGI-DDKCMNYIGSLKSLKSLSLINNPFSDVGAKHIGNLIYLTTLDLSMCANI 563

Query: 265 TDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCL 305
           TD  LVH + L+ +  LNL+ CG + D G+ +LT GL  LK L
Sbjct: 564 TDATLVHFRNLSQISKLNLNFCGNLTDSGVTSLTGGLSQLKTL 606



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 103/356 (28%), Positives = 162/356 (45%), Gaps = 69/356 (19%)

Query: 113 FRRNNAITAQGMKAFAGLINLVKLDL-ERCTRIHGGLVNL-KGLMK--LESLNIKWCNCI 168
           F+R   ++++ +  F     L +L+L  +   I    +N+ KGLM   +  +NI   + +
Sbjct: 306 FQRRKILSSRTLSLFRN-CKLTRLELCGKEVPISDDWLNITKGLMASTITYVNISKNSLL 364

Query: 169 TDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLK----GLQKLTLLNLEGC-----PVTA 218
           TD  +  LS L NL+SL IS   K+  SG+A L      LQKL    +EGC     P   
Sbjct: 365 TDQGIASLSHLRNLQSLDISYVDKIDGSGLAALVDAGVPLQKL---QMEGCLSLKLPQLF 421

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTN 277
             L  L  L SL+      C ++DD C++ S++ +L  L++  N  IT+  L  +  L+ 
Sbjct: 422 TTLSKLKTLSSLYA---GACNMTDDDCQQLSQLQTLTHLDVCRNAVITNRGLQFICNLSR 478

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           L  L++        G +N               Q+ + G++ L  L +LES+     GI 
Sbjct: 479 LTELDI--------GGIN---------------QLDAQGIKCLLQLPHLESLAAENCGID 515

Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
           D  +  +  L SLKSL+L     +D G   + +L  LT LDL                  
Sbjct: 516 DKCMNYIGSLKSLKSLSLINNPFSDVGAKHIGNLIYLTTLDL------------------ 557

Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNV 452
                +C   +TDA + H ++LS ++ LNL+   NLTD     L  GL+ L +L +
Sbjct: 558 ----SMCAN-ITDATLVHFRNLSQISKLNLNFCGNLTDSGVTSLTGGLSQLKTLGI 608



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 101/225 (44%), Gaps = 40/225 (17%)

Query: 264 ITDECLVHLKGLTNLESLNL------DSCGIG---DEGLVNLTGLCNLKCLELSDTQVGS 314
           +TD+ +  L  L NL+SL++      D  G+    D G V L  L    CL L   Q+ +
Sbjct: 364 LTDQGIASLSHLRNLQSLDISYVDKIDGSGLAALVDAG-VPLQKLQMEGCLSLKLPQLFT 422

Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTG 373
           +    LS L  L S+      ++D   ++L+ L +L  L++     IT+ GL  + +L+ 
Sbjct: 423 T----LSKLKTLSSLYAGACNMTDDDCQQLSQLQTLTHLDVCRNAVITNRGLQFICNLSR 478

Query: 374 LTHLDLFGARITDS-GAAYLRNFKNLRSL--EICG----------------------GGL 408
           LT LD+ G    D+ G   L    +L SL  E CG                         
Sbjct: 479 LTELDIGGINQLDAQGIKCLLQLPHLESLAAENCGIDDKCMNYIGSLKSLKSLSLINNPF 538

Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
           +D G KHI +L  LT L+LS   N+TD TL     L+ +  LN++
Sbjct: 539 SDVGAKHIGNLIYLTTLDLSMCANITDATLVHFRNLSQISKLNLN 583



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 84/181 (46%), Gaps = 31/181 (17%)

Query: 315 SGLRHLSGLTNLESINLSFTGISDGS-----------LRKL-----------------AG 346
            G+  LS L NL+S+++S+    DGS           L+KL                 + 
Sbjct: 367 QGIASLSHLRNLQSLDISYVDKIDGSGLAALVDAGVPLQKLQMEGCLSLKLPQLFTTLSK 426

Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG 405
           L +L SL   A  +TD     L+ L  LTHLD+   A IT+ G  ++ N   L  L+I G
Sbjct: 427 LKTLSSLYAGACNMTDDDCQQLSQLQTLTHLDVCRNAVITNRGLQFICNLSRLTELDIGG 486

Query: 406 GGLTDA-GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
               DA G+K +  L  L  L  ++NC + DK +  I  L  L SL++ N+  +  G +H
Sbjct: 487 INQLDAQGIKCLLQLPHLESL-AAENCGIDDKCMNYIGSLKSLKSLSLINNPFSDVGAKH 545

Query: 465 L 465
           +
Sbjct: 546 I 546


>gi|290976022|ref|XP_002670740.1| predicted protein [Naegleria gruberi]
 gi|284084302|gb|EFC37996.1| predicted protein [Naegleria gruberi]
          Length = 213

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 101/195 (51%)

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           LN+   ++  +G +  S++  L  L++  NEI  E   ++  +  L SL++    IG EG
Sbjct: 7   LNIGYNEIGVEGSKFISEMKQLTSLDIYSNEIGVEGAKYISEMKQLTSLDIHYNEIGVEG 66

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
              ++ +  L  L++   Q+G  G +++S +  L S+++ +  I     + ++ ++ L S
Sbjct: 67  SKYISEMNQLTSLDIHSNQIGVEGAKYISEMKQLTSLDIHYNEIGVEGSKYISEMNQLTS 126

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
           L++ + QI   G   ++ +  LT LD+    I   G+ Y+   K+L SL+I    +   G
Sbjct: 127 LDIHSNQIGVEGAKFISEMKSLTSLDIHYNEIGVEGSKYISEMKSLTSLDIYSNEIGVEG 186

Query: 413 VKHIKDLSSLTLLNL 427
            K+I +++ LT L++
Sbjct: 187 AKYISEMNQLTSLDM 201



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 90/174 (51%)

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
           LN+G+NEI  E    +  +  L SL++ S  IG EG   ++ +  L  L++   ++G  G
Sbjct: 7   LNIGYNEIGVEGSKFISEMKQLTSLDIYSNEIGVEGAKYISEMKQLTSLDIHYNEIGVEG 66

Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
            +++S +  L S+++    I     + ++ +  L SL++   +I   G   ++ +  LT 
Sbjct: 67  SKYISEMNQLTSLDIHSNQIGVEGAKYISEMKQLTSLDIHYNEIGVEGSKYISEMNQLTS 126

Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           LD+   +I   GA ++   K+L SL+I    +   G K+I ++ SLT L++  N
Sbjct: 127 LDIHSNQIGVEGAKFISEMKSLTSLDIHYNEIGVEGSKYISEMKSLTSLDIYSN 180



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 96/191 (50%), Gaps = 1/191 (0%)

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           +  L SLN+    IG EG   ++ +  L  L++   ++G  G +++S +  L S+++ + 
Sbjct: 1   MKQLTSLNIGYNEIGVEGSKFISEMKQLTSLDIYSNEIGVEGAKYISEMKQLTSLDIHYN 60

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            I     + ++ ++ L SL++ + QI   G   ++ +  LT LD+    I   G+ Y+  
Sbjct: 61  EIGVEGSKYISEMNQLTSLDIHSNQIGVEGAKYISEMKQLTSLDIHYNEIGVEGSKYISE 120

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
              L SL+I    +   G K I ++ SLT L++  N  +  +  + IS +  L SL++ +
Sbjct: 121 MNQLTSLDIHSNQIGVEGAKFISEMKSLTSLDIHYN-EIGVEGSKYISEMKSLTSLDIYS 179

Query: 455 SRITSAGLRHL 465
           + I   G +++
Sbjct: 180 NEIGVEGAKYI 190



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 15/188 (7%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+   L S+D+  +++   G  ++ +   L SLD ++  +I   G +++  ++ LTSL  
Sbjct: 23  SEMKQLTSLDIYSNEIGVEGAKYISEMKQLTSLDIHYN-EIGVEGSKYISEMNQLTSLDI 81

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG------LMKLESLNIKWCNC 167
             +N I  +G K  + +  L  LD      IH   + ++G      + +L SL+I   N 
Sbjct: 82  -HSNQIGVEGAKYISEMKQLTSLD------IHYNEIGVEGSKYISEMNQLTSLDI-HSNQ 133

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           I     K +S + +L SL I  +++   G  Y+  ++ LT L++    +       +S +
Sbjct: 134 IGVEGAKFISEMKSLTSLDIHYNEIGVEGSKYISEMKSLTSLDIYSNEIGVEGAKYISEM 193

Query: 228 GSLFYLNL 235
             L  L++
Sbjct: 194 NQLTSLDM 201


>gi|397630643|gb|EJK69852.1| hypothetical protein THAOC_08850 [Thalassiosira oceanica]
          Length = 859

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 143/319 (44%), Gaps = 58/319 (18%)

Query: 151 LKGLMKLESLNIKWCNCITDSDMKP----LSGLTNLKSLQISCSKVTDSG---IAYLKGL 203
           L+ +  L S+ +   N ITDS+M+     L  +T L    + CS +TD G   I  L+ L
Sbjct: 158 LEDIADLHSIEVSLPNSITDSEMEHAILYLQLVTRLNC--VGCSYLTDKGFKLIGRLREL 215

Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
           Q+L  L+          L SL+ LG+L            D  +K S  G L        +
Sbjct: 216 QELYFLH-------NKQLTSLTFLGNL------------DRLKKLSVDGMLNSRGKSTPQ 256

Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
           +TDE L    G+   E  +L    IG                   D +V   GL HL+ +
Sbjct: 257 VTDETL----GIIAGEMHSLRELIIG------------------VDMEVSGIGLVHLAEM 294

Query: 324 TNLESINLSF---TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL 379
             LES++L      GI+D  L+ L  L  L+SL +     ++D  L  L  L  +  L+L
Sbjct: 295 GRLESLSLERGAGEGITDNGLKVLCSLGRLRSLRITHCAYLSDRSLNYLQHLHRIEKLEL 354

Query: 380 F---GARITDSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
                +  TD GA  L   KNL+ L + G   LTD GV ++  +S+L  LNL    ++TD
Sbjct: 355 SCVDDSSFTDEGARQLSKLKNLKELSLVGWERLTDRGVYYLSKISTLECLNLRYCPSITD 414

Query: 436 KTLELISGLTGLVSLNVSN 454
           ++LE +  L GL  L +S+
Sbjct: 415 ESLEHLRYLKGLRKLELSD 433



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 150/336 (44%), Gaps = 101/336 (30%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSD--VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
           + D  +D+  S+G       LS SD  +T S L  L+D ++L S++ +    I+D  +EH
Sbjct: 129 MTDNELDIFISKGY------LSRSDKKLTVSYLELLEDIADLHSIEVSLPNSITDSEMEH 182

Query: 102 -----------------------------LRGLS--------NLTSLSF----------- 113
                                        LR L          LTSL+F           
Sbjct: 183 AILYLQLVTRLNCVGCSYLTDKGFKLIGRLRELQELYFLHNKQLTSLTFLGNLDRLKKLS 242

Query: 114 ---------RRNNAITAQGMKAFAGLIN-----LVKLDLERCTRIHG-GLVNLKGLMKLE 158
                    +    +T + +   AG ++     ++ +D+E    + G GLV+L  + +LE
Sbjct: 243 VDGMLNSRGKSTPQVTDETLGIIAGEMHSLRELIIGVDME----VSGIGLVHLAEMGRLE 298

Query: 159 SLNIKW--CNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP 215
           SL+++      ITD+ +K L  L  L+SL+I+ C+ ++D  + YL+ L ++  L L    
Sbjct: 299 SLSLERGAGEGITDNGLKVLCSLGRLRSLRITHCAYLSDRSLNYLQHLHRIEKLEL---- 354

Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKG 274
              +C+D  S               +D+G  + SK+ +LK L+L G+  +TD  + +L  
Sbjct: 355 ---SCVDDSS--------------FTDEGARQLSKLKNLKELSLVGWERLTDRGVYYLSK 397

Query: 275 LTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD 309
           ++ LE LNL  C  I DE L +L  L  L+ LELSD
Sbjct: 398 ISTLECLNLRYCPSITDESLEHLRYLKGLRKLELSD 433



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 120/240 (50%), Gaps = 24/240 (10%)

Query: 67  SDVTDSGLIHLKDCSNLQSLDFNFCIQISD----GGLEHLRGLSNLTSLSFR--RNNAIT 120
           S +TD G   +     LQ L F    Q++     G L+ L+ LS    L+ R      +T
Sbjct: 199 SYLTDKGFKLIGRLRELQELYFLHNKQLTSLTFLGNLDRLKKLSVDGMLNSRGKSTPQVT 258

Query: 121 AQGMKAFAGLIN-----LVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWC--NCITDSD 172
            + +   AG ++     ++ +D+E    + G GLV+L  + +LESL+++      ITD+ 
Sbjct: 259 DETLGIIAGEMHSLRELIIGVDME----VSGIGLVHLAEMGRLESLSLERGAGEGITDNG 314

Query: 173 MKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNL---EGCPVTAACLDSLSALG 228
           +K L  L  L+SL+I+ C+ ++D  + YL+ L ++  L L   +    T      LS L 
Sbjct: 315 LKVLCSLGRLRSLRITHCAYLSDRSLNYLQHLHRIEKLELSCVDDSSFTDEGARQLSKLK 374

Query: 229 SLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC 286
           +L  L+L    +L+D G    SKI +L+ LNL +   ITDE L HL+ L  L  L L  C
Sbjct: 375 NLKELSLVGWERLTDRGVYYLSKISTLECLNLRYCPSITDESLEHLRYLKGLRKLELSDC 434



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 28/157 (17%)

Query: 65  SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR--RNNAITAQ 122
           +G  +TD+GL  L     L+SL    C  +SD  L +L+ L  +  L      +++ T +
Sbjct: 306 AGEGITDNGLKVLCSLGRLRSLRITHCAYLSDRSLNYLQHLHRIEKLELSCVDDSSFTDE 365

Query: 123 GMKAFAGLINLVKLDL---ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
           G +  + L NL +L L   ER T    G+  L  +  LE LN+++C  ITD  ++ L   
Sbjct: 366 GARQLSKLKNLKELSLVGWERLT--DRGVYYLSKISTLECLNLRYCPSITDESLEHLR-- 421

Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
                              YLKGL+KL L + +  P 
Sbjct: 422 -------------------YLKGLRKLELSDCDARPA 439


>gi|71668063|ref|XP_820975.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70886340|gb|EAN99124.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 930

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 115/478 (24%), Positives = 201/478 (42%), Gaps = 85/478 (17%)

Query: 58  SLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           +L  +DLS + VT+ G+   +   + L  L    C +I    L+ LR L+ L  L     
Sbjct: 368 ALRDLDLSYTQVTEEGMYRDVSKLNKLSRLSLEGCRKIE--SLQWLRALNQLRVLDLG-Y 424

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-------------------------GLVNL 151
           +++T   + A      L KLDL+ C RI                           GLV L
Sbjct: 425 SSVTDDSLTALRFCPELAKLDLQWCGRITSLMCLVGALCDSLRELNLTETSVTDEGLVPL 484

Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
           K    LE ++++ C  ++D ++  L  LT L+ + +  ++VT+ G+  L   Q L ++ +
Sbjct: 485 KDFAALEWISLEGCGAVSDVNV--LCNLTRLREVDVGRTRVTNRGVVSLSQCQALRVMRM 542

Query: 212 EGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
             C  +T A  + L AL  L  ++L+ C ++++G        SL+ L L      ++ + 
Sbjct: 543 RQCYRLTDA--NFLGALQQLEEVDLSDCPVTNEGIAALFGARSLRKLRLQSCHAVND-VN 599

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTG-------------------------LCNLKCL 305
            L GL +L  L+L    + +EG V L                           L  LK L
Sbjct: 600 FLGGLEHLMLLDLHHTTVDEEGSVGLAQCPQLMTLIMHSVLVHSLQQWNAALFLPRLKRL 659

Query: 306 ELSDTQVGSSGLRHLSGLTNLESINL-----------------SFTGISDGSLRKLAGLS 348
           +LS T+V S  L  L     LE+++L                 S TG+     R +    
Sbjct: 660 DLSTTKVTSDALSFLRMCPVLETLSLRGCKNITHLDFLILQPSSGTGVCAIVPRDVEPHD 719

Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
           ++  +     +  D G + + ++T    +      I  +  A + +   LR L + G G+
Sbjct: 720 TVGDIIAGKEKNPDDGPSPIETMTTNDGV------IKSTAVAAVVSRHRLRELTLSGTGV 773

Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
           TD G++ ++    L  L L+   N TD  + ++  L+ L  L++S + +T +GL  L+
Sbjct: 774 TDEGLRALQYCPGLERLRLAHCKNFTD--VAVLRWLSQLKELDLSATGVTGSGLAKLS 829



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 107/235 (45%), Gaps = 48/235 (20%)

Query: 179 LTNLKSLQISCSKVTDSGIAY-LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
           L  L+ L +S ++VT+ G+   +  L KL+ L+LEGC    + L  L AL  L  L+L  
Sbjct: 366 LCALRDLDLSYTQVTEEGMYRDVSKLNKLSRLSLEGCRKIES-LQWLRALNQLRVLDLGY 424

Query: 238 CQLSDDG------CEKFSKIG-------------------SLKVLNLGFNEITDECLVHL 272
             ++DD       C + +K+                    SL+ LNL    +TDE LV L
Sbjct: 425 SSVTDDSLTALRFCPELAKLDLQWCGRITSLMCLVGALCDSLRELNLTETSVTDEGLVPL 484

Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD---TQVGSSGLRHLSGLTNLESI 329
           K    LE ++L+ CG     + ++  LCNL  L   D   T+V + G+  LS    L  +
Sbjct: 485 KDFAALEWISLEGCG----AVSDVNVLCNLTRLREVDVGRTRVTNRGVVSLSQCQALRVM 540

Query: 330 NL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
            +     ++D +   L  L  L+ ++L    +T+ G+AA           LFGAR
Sbjct: 541 RMRQCYRLTDANF--LGALQQLEEVDLSDCPVTNEGIAA-----------LFGAR 582



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 139/343 (40%), Gaps = 57/343 (16%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           + L  VD+  + VT+ G++ L  C  L+ +    C +++D     L  L  L  +    +
Sbjct: 511 TRLREVDVGRTRVTNRGVVSLSQCQALRVMRMRQCYRLTDANF--LGALQQLEEVDLS-D 567

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIH-----GGLVNLK---------------GLMK 156
             +T +G+ A  G  +L KL L+ C  ++     GGL +L                GL +
Sbjct: 568 CPVTNEGIAALFGARSLRKLRLQSCHAVNDVNFLGGLEHLMLLDLHHTTVDEEGSVGLAQ 627

Query: 157 LESLNIKWCNCITDSDMKPLSG---LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
              L     + +    ++  +    L  LK L +S +KVT   +++L+    L  L+L G
Sbjct: 628 CPQLMTLIMHSVLVHSLQQWNAALFLPRLKRLDLSTTKVTSDALSFLRMCPVLETLSLRG 687

Query: 214 CPVTAACLDSL-------SALGSLFYLNLNRCQLSDD---GCEKFSKIGSLKVLNLGFNE 263
           C      LD L       + + ++   ++       D   G EK    G   +  +  N+
Sbjct: 688 C-KNITHLDFLILQPSSGTGVCAIVPRDVEPHDTVGDIIAGKEKNPDDGPSPIETMTTND 746

Query: 264 --ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL---TGLCNLK---CLELSDTQVGSS 315
             I    +  +     L  L L   G+ DEGL  L    GL  L+   C   +D  V   
Sbjct: 747 GVIKSTAVAAVVSRHRLRELTLSGTGVTDEGLRALQYCPGLERLRLAHCKNFTDVAV--- 803

Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
               L  L+ L+ ++LS TG++   L KL+      S NL AR
Sbjct: 804 ----LRWLSQLKELDLSATGVTGSGLAKLS-----PSGNLPAR 837


>gi|157865947|ref|XP_001681680.1| putative surface antigen protein [Leishmania major strain Friedlin]
 gi|68124978|emb|CAJ02759.1| putative surface antigen protein [Leishmania major strain Friedlin]
          Length = 610

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 149/317 (47%), Gaps = 2/317 (0%)

Query: 143 RIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
           ++ G L  +   +  LESL+I+ C  I+ +     S + +L  L +  +KV+ S      
Sbjct: 143 KVSGTLPASWHSMTSLESLSIEKCESISGALPPQWSSMKSLSFLNLDGAKVSGSLPPQWS 202

Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
            ++ L  L+L    V+ +     S++  L +LNL+  ++S     ++S +  L VL++  
Sbjct: 203 SMKSLRTLDLGDTQVSGSLPPQWSSMTLLSFLNLDGAKVSGALPPQWSSMTLLAVLDVQG 262

Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
            +++         + +L  LNL    I        + + +L  L++  TQV  +     S
Sbjct: 263 TQVSGTLPPQWSSMKSLSVLNLRGTSISGSVPPQWSSMTSLAVLDVQGTQVSGTLPPQWS 322

Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
            +T+L S+++  T +S     + + ++SL +LNL   Q++ T     +S+T LT LD+ G
Sbjct: 323 LMTSLTSLDVQGTQVSGSVPPQWSSMTSLTALNLRGTQVSGTLPPQWSSMTSLTSLDVQG 382

Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
            +++ +      +  +L +L++ G  ++         +  LT L L+          E  
Sbjct: 383 TQVSGTLPPQWSSMTSLAALDVQGTQVSGTLPPQWSSMRRLTHLLLTDTLLSGTLPAEW- 441

Query: 442 SGLTGLVSLNVSNSRIT 458
           S L  LV+L +S+S+++
Sbjct: 442 SALQSLVTLQLSSSKVS 458



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 99/442 (22%), Positives = 186/442 (42%), Gaps = 54/442 (12%)

Query: 6   ISQQIFNEL---VYSRCLTEVSLEA-FRDCALQDLCLGQYP----GVNDKWMDVIASQGS 57
           +S  +F  L    Y+  L E+ +   +R   ++DL     P     + D W     S+  
Sbjct: 78  VSVNVFVSLDVSTYAGTLPEMPVGVDYRHVMIRDLGFWNMPLLSGTLPDSW-----SKLE 132

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
            L  + L G+ V+ +        ++L+SL    C  IS G L      S++ SLSF   +
Sbjct: 133 KLTFLTLLGNKVSGTLPASWHSMTSLESLSIEKCESIS-GALPP--QWSSMKSLSFLNLD 189

Query: 118 AITAQG--MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES-LNIKWCNCITDSDMK 174
                G     ++ + +L  LDL   T++ G L      M L S LN+          + 
Sbjct: 190 GAKVSGSLPPQWSSMKSLRTLDLGD-TQVSGSLPPQWSSMTLLSFLNLD--GAKVSGALP 246

Query: 175 P-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           P  S +T L  L +  ++V+ +       ++ L++LNL G  ++ +     S++ SL  L
Sbjct: 247 PQWSSMTLLAVLDVQGTQVSGTLPPQWSSMKSLSVLNLRGTSISGSVPPQWSSMTSLAVL 306

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           ++   Q+S     ++S + SL  L++   +++         +T+L +LNL    +     
Sbjct: 307 DVQGTQVSGTLPPQWSLMTSLTSLDVQGTQVSGSVPPQWSSMTSLTALNLRGTQVSGTLP 366

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD------GSLRK---- 343
              + + +L  L++  TQV  +     S +T+L ++++  T +S        S+R+    
Sbjct: 367 PQWSSMTSLTSLDVQGTQVSGTLPPQWSSMTSLAALDVQGTQVSGTLPPQWSSMRRLTHL 426

Query: 344 --------------LAGLSSLKSLNLDARQITDT------GLAALTSLTGLTHLDLFGAR 383
                          + L SL +L L + +++ T      G++   SL  L   DL G+ 
Sbjct: 427 LLTDTLLSGTLPAEWSALQSLVTLQLSSSKVSGTLPPQWSGMSKAQSLQ-LQDCDLSGSL 485

Query: 384 ITDSGAAYLRNFKNLRSLEICG 405
            +   A  +  F +L+  + CG
Sbjct: 486 PSSWSAIPMLAFVSLKGNKFCG 507


>gi|395539122|ref|XP_003771522.1| PREDICTED: F-box/LRR-repeat protein 13, partial [Sarcophilus
           harrisii]
          Length = 509

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 117/420 (27%), Positives = 188/420 (44%), Gaps = 50/420 (11%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC-SNLQSLDFNFC 91
           LQ+L + Q  G+ND  M  +     SL+ ++++ +D+++  L  L  C  NLQ L   +C
Sbjct: 83  LQELNVSQCEGLNDDAMRYVLEGCPSLIHLNIAHTDISNGTLKLLSRCFPNLQKLSLAYC 142

Query: 92  IQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFA----GLINLVKLDL------ 138
              ++ GL +L   +G   +T+L       I+ QG K  A    G+ +LV  D+      
Sbjct: 143 RNFTEKGLLYLNLGKGCHKITNLDLSGCTQISVQGFKDIASSCTGIKHLVINDMPTLTDN 202

Query: 139 ------ERCTRI---------HGGLVNLKGLM--KLESLNIKWCNCITDSDMKPL-SGLT 180
                 ERC  I         H      K L    L  + ++  N ITD   K +     
Sbjct: 203 CIKALVERCKSITSVIFIGSPHLSDTAFKYLTDCSLNKVRVEGNNRITDLTFKLMDKHYG 262

Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG-----SLFYLN 234
           +L  + ++ C ++TD  +  +  L+ L +LNL  C +    +   S LG      L  LN
Sbjct: 263 DLSHIYMTDCERITDVSLKSIANLKNLVVLNLANC-IRIGDVGLRSFLGGPSSSKLRELN 321

Query: 235 LNRC-QLSD-DGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
           L  C Q+SD    E   +  SL  LNL    ++TD  +  +  L NL S++L    I DE
Sbjct: 322 LTHCAQISDLSLAEMGERCRSLTYLNLRSCTQLTDCGIEFITKLPNLISIDLSVTAITDE 381

Query: 292 GLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTN-LESINLSFTGISDGSLRKLAGLSS 349
            L +L+    LK L +S+ + +  SG++H    T  LE +++SF     G + K      
Sbjct: 382 ALTSLSNHKKLKELSVSECEFITDSGVKHFCQSTPILEHLDVSFCLKLSGEILKALSTKC 441

Query: 350 LKSLNLD---ARQITDTGLAALTSLTGLTH-LDLFG-ARITDSGAAY-LRNFKNLRSLEI 403
           L+  +L      ++ D  +  L+      H LD+ G  R+TD    Y L+  K LR L++
Sbjct: 442 LRLTSLSIAGCPKMNDLAIRILSKKCHYLHILDVSGCVRLTDKAIEYLLQGCKQLRILKM 501



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 166/383 (43%), Gaps = 60/383 (15%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN--LKGLMKLESL 160
           R   N+  L+F   +++     K      NL +L++ +C  ++   +   L+G   L  L
Sbjct: 53  RWRPNVLRLNFHGCSSLQWPSFKLINQCKNLQELNVSQCEGLNDDAMRYVLEGCPSLIHL 112

Query: 161 NIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYL---KGLQKLTLLNLEGCP 215
           NI   + I++  +K LS    NL+ L ++ C   T+ G+ YL   KG  K+T L+L GC 
Sbjct: 113 NIAHTD-ISNGTLKLLSRCFPNLQKLSLAYCRNFTEKGLLYLNLGKGCHKITNLDLSGCT 171

Query: 216 VTAA--CLDSLSALGSLFYLNLNRCQLSDDGC-----EKFSKIGSLKVLNLGFNEITDEC 268
             +     D  S+   + +L +N      D C     E+   I S  V+ +G   ++D  
Sbjct: 172 QISVQGFKDIASSCTGIKHLVINDMPTLTDNCIKALVERCKSITS--VIFIGSPHLSDTA 229

Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
             +L   + L  + ++    G+  + +LT        +L D   G   L H+  +T+ E 
Sbjct: 230 FKYLTDCS-LNKVRVE----GNNRITDLT-------FKLMDKHYGD--LSHIY-MTDCER 274

Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDS 387
           I       +D SL+ +A L +L  LNL +  +I D GL +                +   
Sbjct: 275 I-------TDVSLKSIANLKNLVVLNLANCIRIGDVGLRSF---------------LGGP 312

Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
            ++ LR        +I    L + G +      SLT LNL     LTD  +E I+ L  L
Sbjct: 313 SSSKLRELNLTHCAQISDLSLAEMGER----CRSLTYLNLRSCTQLTDCGIEFITKLPNL 368

Query: 448 VSLNVSNSRITSAGLRHL-NHAR 469
           +S+++S + IT   L  L NH +
Sbjct: 369 ISIDLSVTAITDEALTSLSNHKK 391


>gi|75907715|ref|YP_322011.1| small GTP-binding protein domain-containing protein [Anabaena
           variabilis ATCC 29413]
 gi|75701440|gb|ABA21116.1| Small GTP-binding protein domain protein [Anabaena variabilis ATCC
           29413]
          Length = 1107

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 170/340 (50%), Gaps = 33/340 (9%)

Query: 129 GLINLVKLD-----LERCTRIHGGLVNLKGLM--KLESLNIKWCNCITDSDMKPLSGLTN 181
           GL NL KLD     LER   +   +++L+ L+  ++E   I             ++ LTN
Sbjct: 78  GLPNLRKLDISGNPLERIPDLVTQILHLEELILIRVEITEIPEA----------IANLTN 127

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
           L  L +  +++T++  A  K L  LT L+L    +T    ++++ L +L +L L   Q++
Sbjct: 128 LTHLILFSNQITETPEAIAK-LTNLTQLDLSDNQITEIP-EAIANLTNLTHLILFSNQIT 185

Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGL 299
           +   E  + + +L  L+LG N+IT E    +  LTNL  L+L    I +  + + NLT L
Sbjct: 186 E-IPEAIANLTNLTQLDLGDNQIT-EIPKAIANLTNLTQLDLGDNQITEIPKAIANLTNL 243

Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
            +L       T++  +    ++ LTNL  ++LS+  I++   + +A L++L  L L   +
Sbjct: 244 THLILFSNQITEIPEA----IANLTNLMQLDLSYNQITEIP-KAIANLTNLTQLVLSDNK 298

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
           IT+    A+ +LT LT LDL   +IT+     + N  NL  L      +T    + I  L
Sbjct: 299 ITEIP-EAIANLTNLTQLDLSDNKITEIPET-IANLTNLTELYFNYNKITQIA-EAIAKL 355

Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
           ++LT L+LS   N   +  E I+ LT L  L ++ ++IT 
Sbjct: 356 TNLTELHLS--SNQITQIPEAIANLTNLTELYLNYNKITQ 393



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 156/312 (50%), Gaps = 31/312 (9%)

Query: 154 LMKLESL----NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
           L +LESL     +     + D  +K +SG  NLK+L +            L GL  L  L
Sbjct: 38  LQQLESLILGKQVGGYEWVGDRYLKKVSG-NNLKTLPLE-----------LLGLPNLRKL 85

Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
           ++ G P+     D ++ +  L  L L R ++++   E  + + +L  L L  N+IT E  
Sbjct: 86  DISGNPL-ERIPDLVTQILHLEELILIRVEITE-IPEAIANLTNLTHLILFSNQIT-ETP 142

Query: 270 VHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
             +  LTNL  L+L    I +  E + NLT L +L       T++  +    ++ LTNL 
Sbjct: 143 EAIAKLTNLTQLDLSDNQITEIPEAIANLTNLTHLILFSNQITEIPEA----IANLTNLT 198

Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
            ++L    I++   + +A L++L  L+L   QIT+    A+ +LT LTHL LF  +IT+ 
Sbjct: 199 QLDLGDNQITEIP-KAIANLTNLTQLDLGDNQITEIP-KAIANLTNLTHLILFSNQITEI 256

Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
             A + N  NL  L++    +T+   K I +L++LT L LS N     +  E I+ LT L
Sbjct: 257 PEA-IANLTNLMQLDLSYNQITEIP-KAIANLTNLTQLVLSDNK--ITEIPEAIANLTNL 312

Query: 448 VSLNVSNSRITS 459
             L++S+++IT 
Sbjct: 313 TQLDLSDNKITE 324



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 159/327 (48%), Gaps = 43/327 (13%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  +DLS + +T+     + + +NL  L   F  QI++   E +  L+NLT L    +
Sbjct: 149 TNLTQLDLSDNQITEIPEA-IANLTNLTHLIL-FSNQITEIP-EAIANLTNLTQLDLG-D 204

Query: 117 NAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
           N IT +  KA A L NL +LDL   + T I   + NL  L  L    I + N IT+   +
Sbjct: 205 NQIT-EIPKAIANLTNLTQLDLGDNQITEIPKAIANLTNLTHL----ILFSNQITEIP-E 258

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
            ++ LTNL  L +S +++T+   A +  L  LT L L    +T    ++++ L +L  L+
Sbjct: 259 AIANLTNLMQLDLSYNQITEIPKA-IANLTNLTQLVLSDNKITEIP-EAIANLTNLTQLD 316

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           L+  ++++   E  + + +L  L   +N+IT +    +  LTNL  L+L S  I      
Sbjct: 317 LSDNKITE-IPETIANLTNLTELYFNYNKIT-QIAEAIAKLTNLTELHLSSNQI------ 368

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
                          TQ+  +    ++ LTNL  + L++  I+  +   +A L++L  L+
Sbjct: 369 ---------------TQIPEA----IANLTNLTELYLNYNKITQIA-EAIAKLTNLTELH 408

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFG 381
           LD  QIT     AL SL  L  LDL G
Sbjct: 409 LDGNQITQIP-EALESLPKLEKLDLRG 434


>gi|4972088|emb|CAB43884.1| putative protein [Arabidopsis thaliana]
 gi|7269233|emb|CAB81302.1| putative protein [Arabidopsis thaliana]
          Length = 364

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 118/265 (44%), Gaps = 55/265 (20%)

Query: 215 PVTAACLDSLSAL---GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
           P T + L SL  L   G+ F         ++  C  +  +    + N  F          
Sbjct: 10  PKTHSSLASLKKLVLSGANFSAETESLSFTNKSCITYLDVSKTSLKNFSF---------- 59

Query: 272 LKGLTNLESLNLDSCGIGDE--GLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLES 328
           L+ + NLE L+L S   GD+  G V   G  NLK L +SDTQ+  SG+ +L+G +  LE+
Sbjct: 60  LETMFNLEHLDLSSTAFGDDSVGFVACVG-ENLKNLNVSDTQITPSGVGNLAGHVPQLET 118

Query: 329 INLSFTGISD-------------------------------------GSLRKLAGLSSLK 351
           +++S T + D                                      SL  L  L+SL+
Sbjct: 119 LSMSQTFVDDLSILLISTTMPCIKALDLGMNSTLGFYYLISPQEEKEKSLAALQSLTSLE 178

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
           +L+L+   + D  L+ L+SLTGLTHL L    +TDS   +L +  NL SL +  G LT  
Sbjct: 179 TLSLEHPYLGDKALSGLSSLTGLTHLSLTSTSLTDSTLHHLSSLPNLVSLGVRDGVLTSN 238

Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDK 436
           G++  +  + L  L+L Q C L  K
Sbjct: 239 GLEKFRPPNRLRTLDL-QGCWLLTK 262


>gi|356506506|ref|XP_003522022.1| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max]
          Length = 669

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 133/446 (29%), Positives = 200/446 (44%), Gaps = 79/446 (17%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDS------GLIHLKD------- 79
           L+ LCL    G+ D  +D++A +   L ++DLS   +T+        L HL+D       
Sbjct: 182 LRLLCLKWCVGIGDLGVDLVAIKCKELTTLDLSYLPITEKCLPSIFKLQHLEDLVLEGCF 241

Query: 80  ---------------CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
                          C  L+ LD + C  IS     H+ GLS LTS+S      I A G 
Sbjct: 242 GIDDDSLDVDLLKQGCKTLKRLDISGCQNIS-----HV-GLSKLTSISGGLEKLILADGS 295

Query: 125 KAFAGLIN-LVKLDLERCTRIHGGLVNLKGL-------MKLESLNIKWCNCITDSDMKPL 176
                L + L KL + +   + G  V  +GL       + L  L++  C  +TD  +  L
Sbjct: 296 PVTLSLADGLNKLSMLQSIVLDGCPVTSEGLRAIGNLCISLRELSLSKCLGVTDEALSFL 355

Query: 177 -SGLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
            S   +L+ L I+ C K+TD  IA +      LT L +E C +  +           F L
Sbjct: 356 VSKHKDLRKLDITCCRKITDVSIASIANSCTGLTSLKMESCTLVPS---------EAFVL 406

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEG 292
              +C               L+ L+L  NEI DE L+ +   + L SL +  C  I D G
Sbjct: 407 IGQKCHY-------------LEELDLTDNEIDDEGLMSISSCSWLTSLKIGICLNITDRG 453

Query: 293 LVNLTGLCN-LKCLEL-SDTQVGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLS 348
           L  +   C+ LK L+L   T V   G+  ++ G   LE IN S+ T I+D +L  L+  S
Sbjct: 454 LAYVGMRCSKLKELDLYRSTGVDDLGISAIAGGCPGLEMINTSYCTSITDRALIALSKCS 513

Query: 349 SLKSLNLDA-RQITDTGLAALT-SLTGLTHLDLFGAR-ITDSGAAYLRNF-KNLRSLEIC 404
           +L++L +     +T  GLAA+  +   L+ LD+     I DSG   L +F +NLR + + 
Sbjct: 514 NLETLEIRGCLLVTSIGLAAIAMNCRQLSRLDIKKCYNIDDSGMIALAHFSQNLRQINLS 573

Query: 405 GGGLTDAG---VKHIKDLSSLTLLNL 427
              +TD G   + +I  L S TLL+L
Sbjct: 574 YSSVTDVGLLSLANISCLQSFTLLHL 599



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 91/203 (44%), Gaps = 33/203 (16%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL- 102
           V  +   +I  +   L  +DL+ +++ D GL+ +  CS L SL    C+ I+D GL ++ 
Sbjct: 399 VPSEAFVLIGQKCHYLEELDLTDNEIDDEGLMSISSCSWLTSLKIGICLNITDRGLAYVG 458

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNLKGLMKLESL 160
              S L  L   R+  +   G+ A A G   L  ++   CT I    L+ L     LE+L
Sbjct: 459 MRCSKLKELDLYRSTGVDDLGISAIAGGCPGLEMINTSYCTSITDRALIALSKCSNLETL 518

Query: 161 NIKWC-------------NC-------------ITDSDMKPLSGLT-NLKSLQISCSKVT 193
            I+ C             NC             I DS M  L+  + NL+ + +S S VT
Sbjct: 519 EIRGCLLVTSIGLAAIAMNCRQLSRLDIKKCYNIDDSGMIALAHFSQNLRQINLSYSSVT 578

Query: 194 DSG---IAYLKGLQKLTLLNLEG 213
           D G   +A +  LQ  TLL+L+G
Sbjct: 579 DVGLLSLANISCLQSFTLLHLQG 601



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 162/402 (40%), Gaps = 61/402 (15%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGL--SNLTSLSFRRNNAITAQGMKAF-AGLINLVKLD 137
            N+  LD + C ++ DG L  + G   + L  +   R+   TA G+ +  A   +LV+LD
Sbjct: 76  PNVTELDLSLCPRVGDGALGLVAGAYAATLRRMDLSRSRRFTATGLLSLGARCEHLVELD 135

Query: 138 LERCTRIHGGLVNLKGLM-KLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTD 194
           L   T +    V        L  L +  C  +TD  +  ++ G   L+ L +  C  + D
Sbjct: 136 LSNATELRDAGVAAVARARNLRKLWLARCKMVTDMGIGCIAVGCRKLRLLCLKWCVGIGD 195

Query: 195 SGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC--------------- 238
            G+  +    ++LT L+L   P+T  CL S+  L  L  L L  C               
Sbjct: 196 LGVDLVAIKCKELTTLDLSYLPITEKCLPSIFKLQHLEDLVLEGCFGIDDDSLDVDLLKQ 255

Query: 239 ------QLSDDGCEKFSKIGSLKVLNLGF----------NEITDECLVHLKGLTNLESLN 282
                 +L   GC+  S +G  K+ ++            + +T      L  L+ L+S+ 
Sbjct: 256 GCKTLKRLDISGCQNISHVGLSKLTSISGGLEKLILADGSPVTLSLADGLNKLSMLQSIV 315

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
           LD C +  EGL  +  LC +   ELS           LS    +    LSF       LR
Sbjct: 316 LDGCPVTSEGLRAIGNLC-ISLRELS-----------LSKCLGVTDEALSFLVSKHKDLR 363

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYL--RNFKNLR 399
           KL             R+ITD  +A++  S TGLT L +    +  S A  L  +    L 
Sbjct: 364 KLDITC--------CRKITDVSIASIANSCTGLTSLKMESCTLVPSEAFVLIGQKCHYLE 415

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
            L++    + D G+  I   S LT L +    N+TD+ L  +
Sbjct: 416 ELDLTDNEIDDEGLMSISSCSWLTSLKIGICLNITDRGLAYV 457


>gi|320163290|gb|EFW40189.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 830

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 115/424 (27%), Positives = 172/424 (40%), Gaps = 34/424 (8%)

Query: 63  DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
           DL  +D+T        + + L+SL      QI+        GL  LT L+ RRN  ++A 
Sbjct: 18  DLYFTDITSIPAGTFANLTALESLSL-VSGQITSVSPNAFAGLVALTELNLRRN-PLSAV 75

Query: 123 GMKAFAGLINLVKLDL---ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
              AF GL  L +L+L   E  T       +L  L  L SL       I ++    L  L
Sbjct: 76  PTSAFTGLTALQRLNLDHNEITTLSANAFPHLPALTSL-SLTDNQLTTIPENAFAGLGAL 134

Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
           TNL   +   + + ++  A   GL  LT L L    + +    S + L  L  L +N   
Sbjct: 135 TNLDLTENQLTTIPENAFA---GLGALTNLQLPSNKIVSMAAISFTGLAGLTTLIMNNNL 191

Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS---CGIGDEGLVNL 296
           ++         + +L+VL+L +N IT        GL +L SL++ +    G+    L NL
Sbjct: 192 VTTIPENALPGLAALEVLDLRYNSITSVSGNAFAGLLSLRSLDISANAFAGLTALTLFNL 251

Query: 297 T---------------------GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
           T                     GL  L  L L+  ++ S      SGL+ L S+ L+   
Sbjct: 252 TALHTLTLENNLLTSISANAFSGLSALTWLHLAYNRLTSISANAFSGLSALSSLYLNNNP 311

Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
            +  +     GL+SLKSL L A Q+T     A   L  LT+L L   RI    A      
Sbjct: 312 CTAIAAEAFNGLTSLKSLTLVANQLTSISANAFVGLNALTYLYLQNNRIVSFSADAFTGL 371

Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
             L  L+I    +T         L+ L  L L  N  +T  +    + L+ L  L + ++
Sbjct: 372 PVLIYLDIYSNPITSIPSNAFTGLTKLVFLRLDTN-QITSISANAFTELSALRGLWLHSN 430

Query: 456 RITS 459
           RIT+
Sbjct: 431 RITT 434



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 136/331 (41%), Gaps = 6/331 (1%)

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTRIHGGLVNLKGLMKLES 159
             GL  LT+L    N  I +    +F GL  L  L +     T I      L GL  LE 
Sbjct: 152 FAGLGALTNLQLPSNK-IVSMAAISFTGLAGLTTLIMNNNLVTTIPENA--LPGLAALEV 208

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
           L++++ N IT       +GL +L+SL IS +         L  L  L  L LE   +T+ 
Sbjct: 209 LDLRY-NSITSVSGNAFAGLLSLRSLDISANAFAGLTALTLFNLTALHTLTLENNLLTSI 267

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
             ++ S L +L +L+L   +L+      FS + +L  L L  N  T        GLT+L+
Sbjct: 268 SANAFSGLSALTWLHLAYNRLTSISANAFSGLSALSSLYLNNNPCTAIAAEAFNGLTSLK 327

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
           SL L +  +         GL  L  L L + ++ S      +GL  L  +++    I+  
Sbjct: 328 SLTLVANQLTSISANAFVGLNALTYLYLQNNRIVSFSADAFTGLPVLIYLDIYSNPITSI 387

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
                 GL+ L  L LD  QIT     A T L+ L  L L   RIT   A        L 
Sbjct: 388 PSNAFTGLTKLVFLRLDTNQITSISANAFTELSALRGLWLHSNRITTLSANAFIGLTALT 447

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           +L +    LT       K L +   L+ S N
Sbjct: 448 NLPLNDNPLTTTPPGLFKGLPNSLFLSYSSN 478



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 123/286 (43%), Gaps = 13/286 (4%)

Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
           TN     +  + +T         L  L  L+L    +T+   ++ + L +L  LNL R  
Sbjct: 12  TNTTQFDLYFTDITSIPAGTFANLTALESLSLVSGQITSVSPNAFAGLVALTELNLRRNP 71

Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITD---ECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
           LS      F+ + +L+ LNL  NEIT        HL  LT+L   +     I +     L
Sbjct: 72  LSAVPTSAFTGLTALQRLNLDHNEITTLSANAFPHLPALTSLSLTDNQLTTIPENAFAGL 131

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
             L NL   E   T +  +    L  LTNL+  +     ++  S   LAGL++L    ++
Sbjct: 132 GALTNLDLTENQLTTIPENAFAGLGALTNLQLPSNKIVSMAAISFTGLAGLTTLI---MN 188

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG---GGLTDAGV 413
              +T     AL  L  L  LDL    IT           +LRSL+I      GLT   +
Sbjct: 189 NNLVTTIPENALPGLAALEVLDLRYNSITSVSGNAFAGLLSLRSLDISANAFAGLTALTL 248

Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            ++  L +LTL    +N  LT  +    SGL+ L  L+++ +R+TS
Sbjct: 249 FNLTALHTLTL----ENNLLTSISANAFSGLSALTWLHLAYNRLTS 290



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 1/96 (1%)

Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
           T  T  DL+   IT   A    N   L SL +  G +T         L +LT LNL +N 
Sbjct: 12  TNTTQFDLYFTDITSIPAGTFANLTALESLSLVSGQITSVSPNAFAGLVALTELNLRRNP 71

Query: 432 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNH 467
            L+       +GLT L  LN+ ++ IT+       H
Sbjct: 72  -LSAVPTSAFTGLTALQRLNLDHNEITTLSANAFPH 106


>gi|366165824|ref|ZP_09465579.1| internalin A [Acetivibrio cellulolyticus CD2]
          Length = 614

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 110/359 (30%), Positives = 167/359 (46%), Gaps = 61/359 (16%)

Query: 83  LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
           L+ LD N+ +  S   L  L GL NLT L+    NA   + +   + L NL  L L    
Sbjct: 160 LEYLDLNYYVTTS-SDLICLEGLDNLTELNL---NAYKIRDLSHLSNLSNLQILKLN--- 212

Query: 143 RIHGGLVNLKGLMKLESLN--IKWCNCITD-SDMKPLSGLTNLKSLQISCSKVTD-SGIA 198
             +G  + +K L  LE L+  I + N +T+ ++   LS  +NL +L+I    + D SGI+
Sbjct: 213 --NGPDIKMKPLCGLEKLHTLIVYSNLLTNLNNYSELSA-SNLSTLEILSGNLNDISGIS 269

Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF---YLNL------------NRCQLSD- 242
            +K L KLTL       ++   L  +SA+G+L    YLNL            N   LS+ 
Sbjct: 270 NIKSLTKLTL-------ISNINLSDISAIGNLTNLSYLNLCNNNIVDTTPIGNLTNLSEL 322

Query: 243 -------DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
                       F+ + +L  L L  N I D  +  L  LT L  L +D+  I     V+
Sbjct: 323 YLYENNISDVSSFASLTNLSTLYLHNNNIVD--VSSLSNLTKLSDLTIDNNKI-----VD 375

Query: 296 LTGLCNLK--CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
           +  LCNLK  C++ S   +    +  +S +TN+ S+NL+   I D  +  L+ L+ L +L
Sbjct: 376 IAPLCNLKLGCIDFSFNNI--VDISPISKVTNIYSVNLNNNNIVD--ISPLSNLTMLYTL 431

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
           NL    ITD  +  L +L  ++HL+L    ITD  A  L N   +  L +    +TD  
Sbjct: 432 NLSNNLITD--ITPLGNLNSVSHLNLINNPITDVSA--LGNMSRVFQLWLSKTKVTDVS 486



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 155/322 (48%), Gaps = 42/322 (13%)

Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
           LE+C R   G               K+   I   D+K      NL+SL++  S     GI
Sbjct: 92  LEKCIRYATG---------------KFTGDIYYGDVK------NLESLEVD-SAFDFEGI 129

Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
            +L  L+KLT  ++E     +  L ++S+L  L YL+LN    +         + +L  L
Sbjct: 130 QFLTSLKKLTAKSIEES--YSLDLSAISSLKQLEYLDLNYYVTTSSDLICLEGLDNLTEL 187

Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
           NL   +I D  L HL  L+NL+ L L++   G +  + +  LC L+  +L    V S+ L
Sbjct: 188 NLNAYKIRD--LSHLSNLSNLQILKLNN---GPD--IKMKPLCGLE--KLHTLIVYSNLL 238

Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN--LDARQITDTGLAALTSLTGLT 375
            +L+  + L + NLS   I  G+L  ++G+S++KSL        I  + ++A+ +LT L+
Sbjct: 239 TNLNNYSELSASNLSTLEILSGNLNDISGISNIKSLTKLTLISNINLSDISAIGNLTNLS 298

Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
           +L+L    I D+    + N  NL  L +    ++D  V     L++L+ L L  N N+ D
Sbjct: 299 YLNLCNNNIVDTTP--IGNLTNLSELYLYENNISD--VSSFASLTNLSTLYLHNN-NIVD 353

Query: 436 KTLELISGLTGLVSLNVSNSRI 457
             +  +S LT L  L + N++I
Sbjct: 354 --VSSLSNLTKLSDLTIDNNKI 373



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 145/333 (43%), Gaps = 42/333 (12%)

Query: 150 NLKGLMKLESLNIKWCNCITDS---DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
           + +G+  L SL       I +S   D+  +S L  L+ L ++    T S +  L+GL  L
Sbjct: 125 DFEGIQFLTSLKKLTAKSIEESYSLDLSAISSLKQLEYLDLNYYVTTSSDLICLEGLDNL 184

Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
           T LNL    +    L  LS L +L  L LN     D   +    +  L  L      +  
Sbjct: 185 TELNLNAYKIRD--LSHLSNLSNLQILKLNNGP--DIKMKPLCGLEKLHTL-----IVYS 235

Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL-ELS-DTQVGSSGLRHLSGLT 324
             L +L   + L + NL +  I    L +++G+ N+K L +L+  + +  S +  +  LT
Sbjct: 236 NLLTNLNNYSELSASNLSTLEILSGNLNDISGISNIKSLTKLTLISNINLSDISAIGNLT 295

Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
           NL  +NL    I D +   +  L++L  L L    I+D  +++  SLT L+ L L    I
Sbjct: 296 NLSYLNLCNNNIVDTT--PIGNLTNLSELYLYENNISD--VSSFASLTNLSTLYLHNNNI 351

Query: 385 TDSGAAYLRNFKNLRSLEICGGGLTDAG-------------------VKHIKDLSSLTLL 425
            D  +  L N   L  L I    + D                     +  I  ++++  +
Sbjct: 352 VDVSS--LSNLTKLSDLTIDNNKIVDIAPLCNLKLGCIDFSFNNIVDISPISKVTNIYSV 409

Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
           NL+ N N+ D  +  +S LT L +LN+SN+ IT
Sbjct: 410 NLNNN-NIVD--ISPLSNLTMLYTLNLSNNLIT 439


>gi|300693080|ref|YP_003749053.1| type III effector protein [Ralstonia solanacearum PSI07]
 gi|299075117|emb|CBJ34399.1| leucine-rich-repeat type III effector protein (GALA3) [Ralstonia
           solanacearum PSI07]
          Length = 492

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 166/365 (45%), Gaps = 39/365 (10%)

Query: 133 LVKLDLERCTRIHGGLVNLKGL-----MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
           L +LDL RC R+      ++GL     + L  LNI  C        + L+    L SL +
Sbjct: 98  LRELDLSRCERLR-----VEGLDHLLELPLVRLNINGCRLGAKGAQR-LANHPTLTSLDM 151

Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
             +++ D G  YL    +LT+L++    +  A + +L+   +L  L+L+R +   DG   
Sbjct: 152 HGNRIGDEGAKYLAANTRLTVLDVGDNMIGDAGVIALARNTTLTSLHLDRNKFGLDGIRA 211

Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
            +   +L  LN+  N I  E    L   T L +L+++   IGD+G   L     L  L +
Sbjct: 212 LADNTTLTTLNVNKNSIRPEGAEVLATNTTLTTLDIEGNAIGDQGAQRLAASKTLTALNV 271

Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-------------GLS------ 348
            + ++G +G   L+    L S+ + + GI   ++  +A             G+S      
Sbjct: 272 RENEIGRAGGFALAVNKTLVSLAVGYNGIGSEAVIAMAANKRLISLDVEYTGISTAVAEV 331

Query: 349 --------SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
                   SL  LN+ A    D G   L +   +T L++   RI   GA  L   K + S
Sbjct: 332 AAALAASTSLVCLNVGANGFGDEGARRLAASKTITTLNVSYNRIGRDGALALAASKMITS 391

Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
           L++ G  +  AG+K + D ++L  LNLS++  +  + +E ++  T L SL+VS + +  A
Sbjct: 392 LDLAGNIIGTAGIKALVDNTTLATLNLSKS-QIAHEGVEALATNTTLASLDVSCNNLAPA 450

Query: 461 GLRHL 465
            +R L
Sbjct: 451 SVRML 455



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 181/423 (42%), Gaps = 21/423 (4%)

Query: 39  GQYPG------VNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFC 91
           G YP       V D W + ++   ++L  +DLS  + +   GL HL +   L  L+ N C
Sbjct: 72  GNYPNLTELTLVGDFWSNDLSGLPTTLRELDLSRCERLRVEGLDHLLELP-LVRLNINGC 130

Query: 92  IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
            ++   G + L     LTSL     N I  +G K  A    L  LD+        G++ L
Sbjct: 131 -RLGAKGAQRLANHPTLTSLDMH-GNRIGDEGAKYLAANTRLTVLDVGDNMIGDAGVIAL 188

Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
                L SL++       D  ++ L+  T L +L ++ + +   G   L     LT L++
Sbjct: 189 ARNTTLTSLHLDRNKFGLDG-IRALADNTTLTTLNVNKNSIRPEGAEVLATNTTLTTLDI 247

Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
           EG  +       L+A  +L  LN+   ++   G    +   +L  L +G+N I  E ++ 
Sbjct: 248 EGNAIGDQGAQRLAASKTLTALNVRENEIGRAGGFALAVNKTLVSLAVGYNGIGSEAVIA 307

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGL---CNLKCLELSDTQVGSSGLRHLSGLTNLES 328
           +     L SL+++  GI          L    +L CL +     G  G R L+    + +
Sbjct: 308 MAANKRLISLDVEYTGISTAVAEVAAALAASTSLVCLNVGANGFGDEGARRLAASKTITT 367

Query: 329 INLSFTGI-SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
           +N+S+  I  DG+L  LA    + SL+L    I   G+ AL   T L  L+L  ++I   
Sbjct: 368 LNVSYNRIGRDGAL-ALAASKMITSLDLAGNIIGTAGIKALVDNTTLATLNLSKSQIAHE 426

Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS-QNCNLTDK----TLELIS 442
           G   L     L SL++    L  A V+ +   + L LL  S   C+L  K    TL +  
Sbjct: 427 GVEALATNTTLASLDVSCNNLAPASVRMLLTRTKLALLEASFSACDLGAKAELMTLAVRI 486

Query: 443 GLT 445
           G+T
Sbjct: 487 GMT 489


>gi|343416403|emb|CCD20380.1| leucine-rich repeat protein [Trypanosoma vivax Y486]
          Length = 1256

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 134/465 (28%), Positives = 204/465 (43%), Gaps = 41/465 (8%)

Query: 32   ALQDLCLGQYPGVNDKWM-DVIASQGSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFN 89
             LQ+LCL Q   V+D ++ D+   +    LS++ S + +TD S L  ++   +L+ LD N
Sbjct: 656  TLQELCLRQL-SVDDAFLRDLTCHERLRRLSLN-SCTRITDVSPLARMR---SLEILDLN 710

Query: 90   FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
             C  I  G L  L GL+ L  L     N   A  ++       L +L L  CTRI   + 
Sbjct: 711  GCTGIVRG-LHVLCGLTTLQELCLANVNVDDA-FVRDLTCHERLRRLSLNSCTRI-TDVS 767

Query: 150  NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
             L  +  LE LN+  C  I    +  L GLT L+ L +    V D+ +  L   ++L  L
Sbjct: 768  PLARMRSLEMLNLNDCTGIVRG-LHELCGLTTLQELYLPKVYVDDAFLRDLTCHERLRRL 826

Query: 210  NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
            +L  C      +  L+ + SL  LNLN C     G  +   + +L+ L L    + D  L
Sbjct: 827  SLNSCTRITD-VSPLARMRSLEMLNLNGCTGIVRGLHELCGLTTLQELYLRQMSVDDAFL 885

Query: 270  VHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
              L     L  L+L+SC  I D  +  L  + +L+ L+L+D      GL  L GLT L+ 
Sbjct: 886  RDLTCHERLRRLSLNSCTRITD--VSPLARMRSLEMLDLNDCTGIVRGLHELCGLTTLQE 943

Query: 329  INLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDS 387
            + L+   + D  LR L     L+ L+L++  +ITD  ++ L  +  L  LDL G      
Sbjct: 944  LCLANVNVDDAFLRDLTCHERLRELSLNSCTRITD--VSPLARMRSLEKLDLNGCTGIVR 1001

Query: 388  GAAYLRNFKNLRSLEICGGGLTDAGVK-----------------HIKDLSSLTLLNLSQN 430
            G   L     L+ L +    + DA ++                  I D+S L  +   +N
Sbjct: 1002 GLHVLCGLTTLQELYLRQMSVDDALLRDLTCHERLRRLSLNSCTRITDVSPLARMRSLEN 1061

Query: 431  CNLTDKT-----LELISGLTGLVSLNVSNSRITSAGLRHLN-HAR 469
             +L   T     L ++ GLT L  L +    +  A LR L  H R
Sbjct: 1062 MDLNGCTGIVRGLHVLCGLTTLQELYLRQMSVDDAFLRDLTCHER 1106



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 123/421 (29%), Positives = 190/421 (45%), Gaps = 48/421 (11%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  + L+  +V D+ L  L     L+ L  N C +I+D                    
Sbjct: 584 TTLQKLCLANVNVDDAFLRDLTCHERLRELSLNSCTRITD-------------------- 623

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
                  +   A + +L  LDL  CT I  GL  L GL  L+ L ++  + + D+ ++ L
Sbjct: 624 -------VSPLARMRSLENLDLNDCTGIVRGLHVLCGLTTLQELCLRQLS-VDDAFLRDL 675

Query: 177 SGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           +    L+ L + SC+++TD  ++ L  ++ L +L+L GC      L  L  L +L  L L
Sbjct: 676 TCHERLRRLSLNSCTRITD--VSPLARMRSLEILDLNGCTGIVRGLHVLCGLTTLQELCL 733

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
               + D      +    L+ L+L     ITD  +  L  + +LE LNL+ C     GL 
Sbjct: 734 ANVNVDDAFVRDLTCHERLRRLSLNSCTRITD--VSPLARMRSLEMLNLNDCTGIVRGLH 791

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSL 353
            L GL  L+ L L    V  + LR L+    L  ++L S T I+D S   LA + SL+ L
Sbjct: 792 ELCGLTTLQELYLPKVYVDDAFLRDLTCHERLRRLSLNSCTRITDVS--PLARMRSLEML 849

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF---KNLRSLEICG-GGLT 409
           NL+       GL  L  LT L  L L    + D   A+LR+    + LR L +     +T
Sbjct: 850 NLNGCTGIVRGLHELCGLTTLQELYLRQMSVDD---AFLRDLTCHERLRRLSLNSCTRIT 906

Query: 410 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN-HA 468
           D  V  +  + SL +L+L+ +C    + L  + GLT L  L ++N  +  A LR L  H 
Sbjct: 907 D--VSPLARMRSLEMLDLN-DCTGIVRGLHELCGLTTLQELCLANVNVDDAFLRDLTCHE 963

Query: 469 R 469
           R
Sbjct: 964 R 964



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 111/405 (27%), Positives = 176/405 (43%), Gaps = 61/405 (15%)

Query: 92  IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
           + + D  L  L     L  LS   N+      +   A + +L  LDL  CT I  GL  L
Sbjct: 381 VSVDDAFLRDLTCHERLRELSL--NSCTRITDVSPLARMRSLEMLDLNGCTGIVRGLHEL 438

Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLN 210
            GL  L+ L ++  + + D+ ++ L+    L+ L + SC+++TD  ++ L  ++ L +L+
Sbjct: 439 CGLTTLQELYLRQMS-VDDALLRDLTCHERLRELSLNSCTRITD--VSPLARMRSLEMLD 495

Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECL 269
           L GC      L  L  L +L  L L +  + D      +    L+ L+L     ITD  +
Sbjct: 496 LNGCTGIVRGLHELCGLTTLQELYLRQMSVDDALLRDLTCHERLRELSLNSCTRITD--V 553

Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
             L  + +LE LNL+ C     G+V                     GL  L GLT L+ +
Sbjct: 554 SPLARMRSLEILNLNDCT----GIVR--------------------GLHVLCGLTTLQKL 589

Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITD-TGLAALTSLT--------------- 372
            L+   + D  LR L     L+ L+L++  +ITD + LA + SL                
Sbjct: 590 CLANVNVDDAFLRDLTCHERLRELSLNSCTRITDVSPLARMRSLENLDLNDCTGIVRGLH 649

Query: 373 ---GLTHLDLFGARITDSGAAYLRNF---KNLRSLEICG-GGLTDAGVKHIKDLSSLTLL 425
              GLT L     R      A+LR+    + LR L +     +TD  V  +  + SL +L
Sbjct: 650 VLCGLTTLQELCLRQLSVDDAFLRDLTCHERLRRLSLNSCTRITD--VSPLARMRSLEIL 707

Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN-HAR 469
           +L+  C    + L ++ GLT L  L ++N  +  A +R L  H R
Sbjct: 708 DLN-GCTGIVRGLHVLCGLTTLQELCLANVNVDDAFVRDLTCHER 751



 Score = 44.7 bits (104), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 86/183 (46%), Gaps = 7/183 (3%)

Query: 54   SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
            ++  SL ++DL+G      GL  L   + LQ L     + + D  L  L     L  LS 
Sbjct: 1054 ARMRSLENMDLNGCTGIVRGLHVLCGLTTLQELYLRQ-MSVDDAFLRDLTCHERLRKLSL 1112

Query: 114  RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
              N+      +   A + +L  LDL  CT I  GL  L GL  L+ L ++   C+ D+ +
Sbjct: 1113 --NSCTRITDVSPLARMRSLEMLDLNGCTGIVRGLHVLCGLTTLQELYLRQ-MCVDDAFL 1169

Query: 174  KPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
            + L+    L+ L + SC+++TD  ++ L  ++ L +L+L GC      L  L  L +L  
Sbjct: 1170 RDLTCHERLRRLSLNSCTRITD--VSPLARMRSLEMLDLNGCTGIVRGLHVLCGLTTLQE 1227

Query: 233  LNL 235
            L L
Sbjct: 1228 LYL 1230


>gi|242067197|ref|XP_002448875.1| hypothetical protein SORBIDRAFT_05g000740 [Sorghum bicolor]
 gi|241934718|gb|EES07863.1| hypothetical protein SORBIDRAFT_05g000740 [Sorghum bicolor]
          Length = 691

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 114/420 (27%), Positives = 187/420 (44%), Gaps = 65/420 (15%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
           L++L L    GV+D  + ++A +   L S+DLS + +T      +    NLQ L    CI
Sbjct: 202 LRELSLKWCLGVSDLGIQLLALKCRKLTSLDLSYTMITKDSFPPIMKLPNLQELTLVGCI 261

Query: 93  QISDGGLEHLRGL--SNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGLV 149
            I D  L  L+     +L  L       IT  G+ +   L+ NL +LDL  C  +   +V
Sbjct: 262 GIDDDALGSLQKECSKSLQVLDLSHCQNITDVGVSSILKLVPNLFELDLSYCCPVTPSMV 321

Query: 150 -NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAY-LKGLQKL 206
            + + + KL +L ++ C  + D      +   +LK L +S CS +TD+  ++ +  L+ L
Sbjct: 322 RSFQKIPKLRTLKLEGCKFMVDGLKAIGTSCVSLKELNLSKCSGMTDTEFSFAMSRLKNL 381

Query: 207 TLLNLEGCP-VTAACLDSL-SALGSLFYLNLNRC--------QL---------------- 240
             L++  C  +T   L ++ S+  SL  L +  C        QL                
Sbjct: 382 LKLDITCCRNITDVSLAAMTSSCTSLISLRMESCSRVSSGALQLIGKHCSHLEQLDLTDS 441

Query: 241 --SDDGCEKFSKIGSLKVLNLGFN-EITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVN 295
              D+G +  S+ G L  L +G   +I+DE L H+ +   NL  ++L  C G+ D+G++ 
Sbjct: 442 DLDDEGLKALSRCGKLSSLKIGICLKISDEGLTHIGRSCPNLRDIDLYRCGGLSDDGIIP 501

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLN 354
           +   C +                       LESINLS+ T I+D SL  L+  + L +L 
Sbjct: 502 IAQGCPM-----------------------LESINLSYCTEITDRSLISLSKCTKLNTLE 538

Query: 355 LD-ARQITDTGLAALT-SLTGLTHLDLFGA-RITDSGAAYLRNFKN-LRSLEICGGGLTD 410
           +     IT TGL+ +      L+ LD+     + D G  YL  F + LR + +    +TD
Sbjct: 539 IRGCPMITSTGLSEIAMGCRLLSKLDIKKCFEVNDVGMLYLSQFSHSLREINLSYCSVTD 598



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 129/452 (28%), Positives = 194/452 (42%), Gaps = 68/452 (15%)

Query: 59  LLSVDLSGSD-VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           L +VDLS S     +G+  L   C  L  LD +  + + D     +     L  LS  R 
Sbjct: 125 LRAVDLSRSRGFGSAGVAALAASCPGLADLDLSNGVDLGDAAAAEVARAKGLRRLSLARW 184

Query: 117 NAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDM 173
             +T  G+   A G + L +L L+ C  +    + L  L   KL SL++ +   IT    
Sbjct: 185 KPLTDMGLGCVAVGCMELRELSLKWCLGVSDLGIQLLALKCRKLTSLDLSY-TMITKDSF 243

Query: 174 KPLSGLTNLK----------------SLQISCSK------------VTDSGIA-YLKGLQ 204
            P+  L NL+                SLQ  CSK            +TD G++  LK + 
Sbjct: 244 PPIMKLPNLQELTLVGCIGIDDDALGSLQKECSKSLQVLDLSHCQNITDVGVSSILKLVP 303

Query: 205 KLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLG-F 261
            L  L+L  C PVT + + S   +  L  L L  C+   DG +   +   SLK LNL   
Sbjct: 304 NLFELDLSYCCPVTPSMVRSFQKIPKLRTLKLEGCKFMVDGLKAIGTSCVSLKELNLSKC 363

Query: 262 NEITD-ECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLR 318
           + +TD E    +  L NL  L++  C  I D  L  +T  C +L  L +      SSG  
Sbjct: 364 SGMTDTEFSFAMSRLKNLLKLDITCCRNITDVSLAAMTSSCTSLISLRMESCSRVSSGAL 423

Query: 319 HLSG--LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
            L G   ++LE ++L+ + + D  L+ L+    L SL +        G+    S  GLTH
Sbjct: 424 QLIGKHCSHLEQLDLTDSDLDDEGLKALSRCGKLSSLKI--------GICLKISDEGLTH 475

Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI-KDLSSLTLLNLSQNCNLT 434
           +               R+  NLR +++   GGL+D G+  I +    L  +NLS    +T
Sbjct: 476 IG--------------RSCPNLRDIDLYRCGGLSDDGIIPIAQGCPMLESINLSYCTEIT 521

Query: 435 DKTLELISGLTGLVSLNVSN-SRITSAGLRHL 465
           D++L  +S  T L +L +     ITS GL  +
Sbjct: 522 DRSLISLSKCTKLNTLEIRGCPMITSTGLSEI 553


>gi|220932817|ref|YP_002509725.1| hypothetical protein Hore_19830 [Halothermothrix orenii H 168]
 gi|219994127|gb|ACL70730.1| leucine-rich repeat protein [Halothermothrix orenii H 168]
          Length = 531

 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 137/466 (29%), Positives = 211/466 (45%), Gaps = 82/466 (17%)

Query: 20  LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD 79
           LTE S+ +FR   +  +  G    +N K + +    G + +S      D+T   L HL D
Sbjct: 66  LTEFSIPSFRHYEINSIK-GLEAFLNIKTLRI----GPNYIS------DLT--PLAHLTD 112

Query: 80  CSNLQSLDFNFCIQISD----GGLEHLRGLSNLTSLSFRR---NNAITAQGMKAFAGLIN 132
              L    + F   I D    G L+ LR L       +++   +   +   ++  + L  
Sbjct: 113 LERL----YIFENHIEDLSPLGKLKELRELIIRGLPPYKKGLPSGKYSGHYIEDISPLAG 168

Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS--DMKPLSGLTNLKSLQISCS 190
           LVKL+  + +  H  + NL+ L +L   N+K  N   +S  D+KPL+ LT L  L +  +
Sbjct: 169 LVKLEYLKLS--HQKISNLETLTQLP--NLKTLNVAYNSISDLKPLTALTGLSHLDLEAN 224

Query: 191 KVTDSGIAYLKGLQKLTLLNL--------------EGCPVTAACLDSLSALGSLFYL-NL 235
            + D  I+ L+GL+KLT LNL              EG  V     + L  + SL  L NL
Sbjct: 225 NIKD--ISPLRGLKKLTYLNLIRNELTGVKHLSSLEGLQVLLLSGNDLRNIASLTRLVNL 282

Query: 236 NRCQLSDDG---CEKFSKIGSLKVLNLGFNEITD-----ECLVHLKGLTNLESLNLDSCG 287
            +  +SD+         +   LK LN+  N I D     EC         LE L   +C 
Sbjct: 283 EKLDISDNNISVAPGLKEFKGLKELNISGNPIDDINFISEC-------RKLERLLAFNCE 335

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           I D  +  L G  +LK L L + ++  + +  L GL  LE ++LS   I + S+  ++GL
Sbjct: 336 IRD--ISPLRGHNSLKELFLHNNRI--TDISPLEGLNTLERLDLSGNSIENVSV--ISGL 389

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
           + LK L+L+   +T   +  L  L  L +L+L   RI  S    L+   NL++L +    
Sbjct: 390 NKLKYLDLEGCGLT--AIEFLKDLGSLEYLELENNRI--SQIEPLKKHINLKTLVLDNN- 444

Query: 408 LTDAGVKHIKDLSSL-TLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
                   IKD+S+L  L+NL +  +L D  +E I  LTGL  L V
Sbjct: 445 -------QIKDISTLGELMNL-KVLSLNDNQIENIDSLTGLNQLEV 482



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 155/327 (47%), Gaps = 56/327 (17%)

Query: 145 HGGLVNLKGLMKLESLNIKWCNCITD--SDMKPLSGLTNLKSLQISCSKVTD-SGIAYLK 201
           H  + ++KGL     LNIK      +  SD+ PL+ LT+L+ L I  + + D S +  LK
Sbjct: 76  HYEINSIKGLEAF--LNIKTLRIGPNYISDLTPLAHLTDLERLYIFENHIEDLSPLGKLK 133

Query: 202 GLQKLTLLNL----EGCP---VTAACLDSLSALGSLF---YLNLNRCQLSDDGCEKFSKI 251
            L++L +  L    +G P    +   ++ +S L  L    YL L+  ++S+   E  +++
Sbjct: 134 ELRELIIRGLPPYKKGLPSGKYSGHYIEDISPLAGLVKLEYLKLSHQKISN--LETLTQL 191

Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
            +LK LN+ +N I+D  L  L  LT L  L+L++  I D  +  L GL  L  L L   +
Sbjct: 192 PNLKTLNVAYNSISD--LKPLTALTGLSHLDLEANNIKD--ISPLRGLKKLTYLNLIRNE 247

Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
           +  +G++HLS L  L+ + L     S   LR +A L+ L  +NL+   I+D  ++     
Sbjct: 248 L--TGVKHLSSLEGLQVLLL-----SGNDLRNIASLTRL--VNLEKLDISDNNISV---- 294

Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
                            A  L+ FK L+ L I G  + D  +  I +   L  L L+ NC
Sbjct: 295 -----------------APGLKEFKGLKELNISGNPIDD--INFISECRKLERL-LAFNC 334

Query: 432 NLTDKTLELISGLTGLVSLNVSNSRIT 458
            + D  +  + G   L  L + N+RIT
Sbjct: 335 EIRD--ISPLRGHNSLKELFLHNNRIT 359



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 145/305 (47%), Gaps = 56/305 (18%)

Query: 192 VTDSGIAYLKG--LQKLTLLNL---EGCPVTAACLDSLS--ALGSLFYLNLNRCQLSDDG 244
           V D+GI   +   L+K+ + +L   EG PV    +++L+  ++ S  +  +N  +    G
Sbjct: 30  VEDTGIIVFEDEDLKKVVMRSLSKPEG-PVFRPEVENLTEFSIPSFRHYEINSIK----G 84

Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
            E F  I +L++   G N I+D  L  L  LT+LE L +    I D  L  L  L  L+ 
Sbjct: 85  LEAFLNIKTLRI---GPNYISD--LTPLAHLTDLERLYIFENHIED--LSPLGKLKELRE 137

Query: 305 LELSDTQVGSSGLR-------------HLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
           L +        GL               L+GL  LE + LS   IS+  L  L  L +LK
Sbjct: 138 LIIRGLPPYKKGLPSGKYSGHYIEDISPLAGLVKLEYLKLSHQKISN--LETLTQLPNLK 195

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
           +LN+    I+D  L  LT+LTGL+HLDL    I D   + LR  K L  L +    LT  
Sbjct: 196 TLNVAYNSISD--LKPLTALTGLSHLDLEANNIKD--ISPLRGLKKLTYLNLIRNELT-- 249

Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS---LNVSNSRITSA-------G 461
           GVKH+  L  L +L LS N       L  I+ LT LV+   L++S++ I+ A       G
Sbjct: 250 GVKHLSSLEGLQVLLLSGN------DLRNIASLTRLVNLEKLDISDNNISVAPGLKEFKG 303

Query: 462 LRHLN 466
           L+ LN
Sbjct: 304 LKELN 308



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 84/252 (33%), Positives = 117/252 (46%), Gaps = 29/252 (11%)

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM----KL 157
           L  L NL  L    NN   A G+K F GL  L          I G  ++    +    KL
Sbjct: 276 LTRLVNLEKLDISDNNISVAPGLKEFKGLKEL---------NISGNPIDDINFISECRKL 326

Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
           E L    C      D+ PL G  +LK L +  +++TD  I+ L+GL  L  L+L G  + 
Sbjct: 327 ERLLAFNCEI---RDISPLRGHNSLKELFLHNNRITD--ISPLEGLNTLERLDLSGNSIE 381

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
              +  +S L  L YL+L  C L+    E    +GSL+ L L  N I+   +  LK   N
Sbjct: 382 NVSV--ISGLNKLKYLDLEGCGLT--AIEFLKDLGSLEYLELENNRISQ--IEPLKKHIN 435

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           L++L LD+  I D  +  L  L NLK L L+D Q+    +  L+GL  LE + +S   I 
Sbjct: 436 LKTLVLDNNQIKD--ISTLGELMNLKVLSLNDNQI--ENIDSLTGLNQLEVLYISGNRIR 491

Query: 338 D-GSLRKLAGLS 348
           +   L KL  LS
Sbjct: 492 NIKPLLKLNNLS 503


>gi|28555894|emb|CAD45029.1| NBS-LRR disease resistance protein homologue [Hordeum vulgare]
          Length = 1262

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 116/395 (29%), Positives = 172/395 (43%), Gaps = 28/395 (7%)

Query: 82   NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
            NLQ+LDF+ C ++ +   E L GL+NL +L     + + +  +K+   L NL  LDL  C
Sbjct: 827  NLQTLDFSVCHKL-ESVPESLGGLNNLQTLKLSVCDNLVSL-LKSLGSLKNLQTLDLSGC 884

Query: 142  TRIH------GGLVNLKGL-----MKLESL-------------NIKWCNCITDSDMKPLS 177
             ++       G L NL+ L      KLESL             NI WC  +     K L 
Sbjct: 885  KKLESLPESLGSLENLQILNLSNCFKLESLPESLGRLKNLQTLNISWCTELVFLP-KNLG 943

Query: 178  GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
             L NL  L +S     +S    L  L+ L  LNL  C    +  +SL  L +L  L+L  
Sbjct: 944  NLKNLPRLDLSGCMKLESLPDSLGSLENLETLNLSKCFKLESLPESLGGLQNLQTLDLLV 1003

Query: 238  CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
            C   +   E    + +L+ L L F    +     L GL NL++L L  C   +    +L 
Sbjct: 1004 CHKLESLPESLGGLKNLQTLQLSFCHKLESLPESLGGLKNLQTLTLSVCDKLESLPESLG 1063

Query: 298  GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
             L NL  L+L       S    L  + NL ++NLS     +     +  L +L+ LNL  
Sbjct: 1064 SLKNLHTLKLQVCYKLKSLPESLGSIKNLHTLNLSVCHNLESIPESVGSLENLQILNLSN 1123

Query: 358  RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
                ++   +L SL  L  L L       S    L N KNL++L++ G    ++    + 
Sbjct: 1124 CFKLESIPKSLGSLKNLQTLILSWCTRLVSLPKNLGNLKNLQTLDLSGCKKLESLPDSLG 1183

Query: 418  DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
             L +L  LNLS NC   +   E++  L  L +LN+
Sbjct: 1184 SLENLQTLNLS-NCFKLESLPEILGSLKKLQTLNL 1217



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 173/382 (45%), Gaps = 25/382 (6%)

Query: 44   VNDKWMDVIASQGS--SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQI-----SD 96
            V D  + ++ S GS  +L ++DLSG    +S    L    NLQ L+ + C ++     S 
Sbjct: 859  VCDNLVSLLKSLGSLKNLQTLDLSGCKKLESLPESLGSLENLQILNLSNCFKLESLPESL 918

Query: 97   GGLEHLRGL--SNLTSLSFRRNNAITAQGMK---------------AFAGLINLVKLDLE 139
            G L++L+ L  S  T L F   N    + +                +   L NL  L+L 
Sbjct: 919  GRLKNLQTLNISWCTELVFLPKNLGNLKNLPRLDLSGCMKLESLPDSLGSLENLETLNLS 978

Query: 140  RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
            +C ++     +L GL  L++L++  C+ + +S  + L GL NL++LQ+S     +S    
Sbjct: 979  KCFKLESLPESLGGLQNLQTLDLLVCHKL-ESLPESLGGLKNLQTLQLSFCHKLESLPES 1037

Query: 200  LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
            L GL+ L  L L  C    +  +SL +L +L  L L  C       E    I +L  LNL
Sbjct: 1038 LGGLKNLQTLTLSVCDKLESLPESLGSLKNLHTLKLQVCYKLKSLPESLGSIKNLHTLNL 1097

Query: 260  GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
                  +     +  L NL+ LNL +C   +    +L  L NL+ L LS      S  ++
Sbjct: 1098 SVCHNLESIPESVGSLENLQILNLSNCFKLESIPKSLGSLKNLQTLILSWCTRLVSLPKN 1157

Query: 320  LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
            L  L NL++++LS     +     L  L +L++LNL      ++    L SL  L  L+L
Sbjct: 1158 LGNLKNLQTLDLSGCKKLESLPDSLGSLENLQTLNLSNCFKLESLPEILGSLKKLQTLNL 1217

Query: 380  FGARITDSGAAYLRNFKNLRSL 401
            F     +S    L + K+L++L
Sbjct: 1218 FRCGKLESLPESLGSLKHLQTL 1239



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 168/368 (45%), Gaps = 7/368 (1%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL-EHLRGLSNLTSLSFRRNNAIT 120
           +DLSG  + D           L+ L+     ++ D    E +  LS L  L+   +  I 
Sbjct: 569 LDLSGCSIKDFA----SALGQLKQLEVLIAQKLQDRQFPESITRLSKLHYLNLSGSRGI- 623

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           ++   +   L++LV LDL  CT +      L  L  L++L++ WC  + +S  + L  + 
Sbjct: 624 SEIPSSVGKLVSLVHLDLSYCTNVKVIPKALGILRNLQTLDLSWCEKL-ESLPESLGSVQ 682

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NL+ L +S     ++    L  L+ +  L+L  C    +  +SL +L ++  L+L+RC  
Sbjct: 683 NLQRLNLSNCFELEALPESLGSLKDVQTLDLSSCYKLESLPESLGSLKNVQTLDLSRCYK 742

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
                +   ++ +L+ ++L   +  +        L NL+ LNL +C   +    +   L 
Sbjct: 743 LVSLPKNLGRLKNLRTIDLSGCKKLETFPESFGSLENLQILNLSNCFELESLPESFGSLK 802

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
           NL+ L L + +   S    L GL NL++++ S     +     L GL++L++L L     
Sbjct: 803 NLQTLNLVECKKLESLPESLGGLKNLQTLDFSVCHKLESVPESLGGLNNLQTLKLSVCDN 862

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
             + L +L SL  L  LDL G +  +S    L + +NL+ L +      ++  + +  L 
Sbjct: 863 LVSLLKSLGSLKNLQTLDLSGCKKLESLPESLGSLENLQILNLSNCFKLESLPESLGRLK 922

Query: 421 SLTLLNLS 428
           +L  LN+S
Sbjct: 923 NLQTLNIS 930



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 170/373 (45%), Gaps = 6/373 (1%)

Query: 82   NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM-KAFAGLINLVKLDLER 140
            NLQ+LD ++C ++ +   E L  + NL  L+   +N    + + ++   L ++  LDL  
Sbjct: 659  NLQTLDLSWCEKL-ESLPESLGSVQNLQRLNL--SNCFELEALPESLGSLKDVQTLDLSS 715

Query: 141  CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
            C ++     +L  L  +++L++  C  +  S  K L  L NL+++ +S  K  ++     
Sbjct: 716  CYKLESLPESLGSLKNVQTLDLSRCYKLV-SLPKNLGRLKNLRTIDLSGCKKLETFPESF 774

Query: 201  KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
              L+ L +LNL  C    +  +S  +L +L  LNL  C+  +   E    + +L+ L+  
Sbjct: 775  GSLENLQILNLSNCFELESLPESFGSLKNLQTLNLVECKKLESLPESLGGLKNLQTLDFS 834

Query: 261  FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
                 +     L GL NL++L L  C      L +L  L NL+ L+LS  +   S    L
Sbjct: 835  VCHKLESVPESLGGLNNLQTLKLSVCDNLVSLLKSLGSLKNLQTLDLSGCKKLESLPESL 894

Query: 321  SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
              L NL+ +NLS     +     L  L +L++LN+            L +L  L  LDL 
Sbjct: 895  GSLENLQILNLSNCFKLESLPESLGRLKNLQTLNISWCTELVFLPKNLGNLKNLPRLDLS 954

Query: 381  GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
            G    +S    L + +NL +L +      ++  + +  L +L  L+L   C+  +   E 
Sbjct: 955  GCMKLESLPDSLGSLENLETLNLSKCFKLESLPESLGGLQNLQTLDLLV-CHKLESLPES 1013

Query: 441  ISGLTGLVSLNVS 453
            + GL  L +L +S
Sbjct: 1014 LGGLKNLQTLQLS 1026



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 175/395 (44%), Gaps = 4/395 (1%)

Query: 59   LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
            L ++DLS  +  +S    L    NLQ L+ + C ++ +   E L  L ++ +L       
Sbjct: 660  LQTLDLSWCEKLESLPESLGSVQNLQRLNLSNCFEL-EALPESLGSLKDVQTLDLSSCYK 718

Query: 119  ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
            + +   ++   L N+  LDL RC ++     NL  L  L ++++  C  + ++  +    
Sbjct: 719  LESLP-ESLGSLKNVQTLDLSRCYKLVSLPKNLGRLKNLRTIDLSGCKKL-ETFPESFGS 776

Query: 179  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
            L NL+ L +S     +S       L+ L  LNL  C    +  +SL  L +L  L+ + C
Sbjct: 777  LENLQILNLSNCFELESLPESFGSLKNLQTLNLVECKKLESLPESLGGLKNLQTLDFSVC 836

Query: 239  QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
               +   E    + +L+ L L   +     L  L  L NL++L+L  C   +    +L  
Sbjct: 837  HKLESVPESLGGLNNLQTLKLSVCDNLVSLLKSLGSLKNLQTLDLSGCKKLESLPESLGS 896

Query: 299  LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
            L NL+ L LS+     S    L  L NL+++N+S+        + L  L +L  L+L   
Sbjct: 897  LENLQILNLSNCFKLESLPESLGRLKNLQTLNISWCTELVFLPKNLGNLKNLPRLDLSGC 956

Query: 359  QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
               ++   +L SL  L  L+L      +S    L   +NL++L++      ++  + +  
Sbjct: 957  MKLESLPDSLGSLENLETLNLSKCFKLESLPESLGGLQNLQTLDLLVCHKLESLPESLGG 1016

Query: 419  LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
            L +L  L LS  C+  +   E + GL  L +L +S
Sbjct: 1017 LKNLQTLQLS-FCHKLESLPESLGGLKNLQTLTLS 1050


>gi|158429244|pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
          Length = 462

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 112/374 (29%), Positives = 174/374 (46%), Gaps = 64/374 (17%)

Query: 92  IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
           I  S+  L  +  L NLT L      NN I    +   A L NL  L L      +  + 
Sbjct: 68  INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGLTL-----FNNQIT 120

Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
           ++  L  L +LN    +  T SD+  LSGLT+L+ L  S ++VTD     LK L  LT  
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTD-----LKPLANLT-- 173

Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
            LE   +++  +  +S L                   K + + SL   N   N+I+D  +
Sbjct: 174 TLERLDISSNKVSDISVLA------------------KLTNLESLIATN---NQISD--I 210

Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
             L  LTNL+ L+L+   + D G   L  L NL  L+L++ Q+  S L  LSGLT L  +
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTEL 266

Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
            L    IS+  +  LAGL++L +L L+  Q+ D  ++ +++L  LT+L L+   I+D   
Sbjct: 267 KLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD--I 320

Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449
           + + +   L+ L      ++D  V  + +L+++  L+   N          IS LT L +
Sbjct: 321 SPVSSLTKLQRLFFSNNKVSD--VSSLANLTNINWLSAGHNQ---------ISDLTPLAN 369

Query: 450 LNVSNSRITSAGLR 463
           L    +RIT  GL 
Sbjct: 370 L----TRITQLGLN 379



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 120/249 (48%), Gaps = 42/249 (16%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 57  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 109

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+  + Q+TD
Sbjct: 110 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTD 165

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 166 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 223

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 224 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 278

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 279 LAGLTALTN 287


>gi|433448864|ref|ZP_20411729.1| Internalin A [Weissella ceti NC36]
 gi|429539253|gb|ELA07290.1| Internalin A [Weissella ceti NC36]
          Length = 1042

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 149/300 (49%), Gaps = 28/300 (9%)

Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD--SDMKPLSGLTNLKSLQISCSKVT 193
           L +E     + G+ +L GL   E+ N+KW +   +  S ++PL  + NL  L +  +K  
Sbjct: 68  LKIESLNLTYSGVTDLSGLE--EAKNLKWLDLTGNAISSLEPLGQVHNLSFLSLRFNKTK 125

Query: 194 D-SGIAYLKGLQKLTLLNLEGC-----PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
           D   +A LK    +  LNL G      P   A +  L+ L +L   N    QL D     
Sbjct: 126 DIPDLAPLK-TTAIKELNLVGNDYGLEPQKMAAISHLTTLETLEMQNNKLTQLPD----- 179

Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
            S++ +L+ L +  N++TD  +  +K +  L  L ++S  I D     ++ L NL+ L +
Sbjct: 180 LSQLTNLRFLGVAGNKLTD--VSGVKNMVRLTGLEVNSNQITD--FEPISHLTNLERLHV 235

Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLA 366
            + +  SS +  L  LT L+  N S  G+S+  +   AG+  ++SL +D   QI+D  L+
Sbjct: 236 GNNR--SSDISSLKTLTKLKKGNFSQMGLSNEQMTVFAGMKDMESLAIDFNDQISD--LS 291

Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLL 425
           +L+ LT LT LD     +T    A L    NL++L      ++D  V K++ +LSSLT+L
Sbjct: 292 SLSQLTNLTTLDFSKDGVT--SLAPLAGLTNLQTLGFSNNKVSDISVLKNMPNLSSLTML 349


>gi|158429246|pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
          Length = 462

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 112/374 (29%), Positives = 174/374 (46%), Gaps = 64/374 (17%)

Query: 92  IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
           I  S+  L  +  L NLT L      NN I    +   A L NL  L L      +  + 
Sbjct: 68  INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGLTL-----FNNQIT 120

Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
           ++  L  L +LN    +  T SD+  LSGLT+L+ L  S ++VTD     LK L  LT  
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD-----LKPLANLT-- 173

Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
            LE   +++  +  +S L                   K + + SL   N   N+I+D  +
Sbjct: 174 TLERLDISSNKVSDISVLA------------------KLTNLESLIATN---NQISD--I 210

Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
             L  LTNL+ L+L+   + D G   L  L NL  L+L++ Q+  S L  LSGLT L  +
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTEL 266

Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
            L    IS+  +  LAGL++L +L L+  Q+ D  ++ +++L  LT+L L+   I+D   
Sbjct: 267 KLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD--I 320

Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449
           + + +   L+ L      ++D  V  + +L+++  L+   N          IS LT L +
Sbjct: 321 SPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ---------ISDLTPLAN 369

Query: 450 LNVSNSRITSAGLR 463
           L    +RIT  GL 
Sbjct: 370 L----TRITQLGLN 379



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 120/249 (48%), Gaps = 42/249 (16%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 57  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 109

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ LN  + Q+TD
Sbjct: 110 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTD 165

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 166 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 223

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 224 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 278

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 279 LAGLTALTN 287


>gi|84043398|ref|XP_951489.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
 gi|33348218|gb|AAQ15545.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
 gi|62359994|gb|AAX80418.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei]
          Length = 1110

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 189/424 (44%), Gaps = 74/424 (17%)

Query: 65  SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGLSNL 108
           SG  V D+ L  L DC +L+ L+ ++CIQ++D         +E L         RG+  +
Sbjct: 303 SGVPVEDNCLKDLCDCGSLERLNISYCIQLTDINPLSNATAIEELNLNGCRRITRGIGVV 362

Query: 109 TSLSFRR-----NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
            +L   R     +  ++   + +     +LV+L LE C +  G +  L  L+ LE LN+ 
Sbjct: 363 WALPKLRVLHMKDVHLSEPSLDSVGTGGSLVRLSLENC-KGFGDVKPLSNLVTLEELNLH 421

Query: 164 WCNCITDSDMKPLSGLTNLKSLQI--------------------------SCSKVTD-SG 196
           +C+ +T S M  L  L  L+ L +                           C K+T  S 
Sbjct: 422 YCDKVT-SGMGTLGRLPQLRVLDLGRTQVDNNSLENICTSSIPLVSLNLSHCKKITSISA 480

Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
           IA L  L++L + N   C VT+   +    L  L    L+  +++D+     S+  SL  
Sbjct: 481 IASLTALEELNIDN--SCNVTSG-WNVFGTLHQLRVATLSNTRINDENIRHVSECKSLNT 537

Query: 257 LNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
           LNL F  +ITD  +  L  +T LE LNLD C    +G+  L  L   + L + +  +G  
Sbjct: 538 LNLAFCKDITD--VTALSKITMLEELNLDCCPNIRKGIETLGKLPKARILSMKECYMGDG 595

Query: 316 GLRHLSGLTNLES---INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
             +  S L N +S   +NL  + +   S++ L+ +++L+ L LD  +     +  + S +
Sbjct: 596 YAQQCSILGNSKSLVKLNLERS-MGFISVKALSNIATLEELVLDHAE----EVCCIPSFS 650

Query: 373 GLTHLDLFGARITDSGAAYLRNF---KNLRSLEICG-GGLTDAGVKHIKDLSSL-TLLNL 427
            L  L +   + TD      +N    K+LRSL +     +TD  V     LSSL TL  L
Sbjct: 651 CLPRLRVLNLKYTDINGDVTKNISESKSLRSLNLSHCKWVTDISV-----LSSLSTLEEL 705

Query: 428 SQNC 431
           + NC
Sbjct: 706 NVNC 709



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 118/401 (29%), Positives = 183/401 (45%), Gaps = 60/401 (14%)

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL---DLERCTRIHG--GLVNLKGL-- 154
           L+ L  L  L FR NN I     +    ++ L +L   D  + T I G   L NLK L  
Sbjct: 173 LKRLHMLKRLCFRSNN-IDNNDARHLFNIVTLEELAITDTMQLTNIRGISRLTNLKCLEL 231

Query: 155 ----------------MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGI 197
                            KL  L++  CN ITD+   P+S L  L+ L + SC  +T  GI
Sbjct: 232 NSTDIDDSCIGEISACAKLSKLSVSECNNITDA--TPISQLAALEELNLNSCYHIT-KGI 288

Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSD-------------- 242
             L  L +L +L+L G PV   CL  L   GSL  LN++ C QL+D              
Sbjct: 289 ETLGMLLRLRMLDLSGVPVEDNCLKDLCDCGSLERLNISYCIQLTDINPLSNATAIEELN 348

Query: 243 -DGCEKFSK-------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGL 293
            +GC + ++       +  L+VL++    +++  L  +    +L  L+L++C G GD  +
Sbjct: 349 LNGCRRITRGIGVVWALPKLRVLHMKDVHLSEPSLDSVGTGGSLVRLSLENCKGFGD--V 406

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS-SLKS 352
             L+ L  L+ L L      +SG+  L  L  L  ++L  T + + SL  +   S  L S
Sbjct: 407 KPLSNLVTLEELNLHYCDKVTSGMGTLGRLPQLRVLDLGRTQVDNNSLENICTSSIPLVS 466

Query: 353 LNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
           LNL   ++I  T ++A+ SLT L  L++  +    SG         LR   +    + D 
Sbjct: 467 LNLSHCKKI--TSISAIASLTALEELNIDNSCNVTSGWNVFGTLHQLRVATLSNTRINDE 524

Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
            ++H+ +  SL  LNL+   ++TD T   +S +T L  LN+
Sbjct: 525 NIRHVSECKSLNTLNLAFCKDITDVT--ALSKITMLEELNL 563



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 167/378 (44%), Gaps = 60/378 (15%)

Query: 98  GLEHLRGLSNLTSLS-FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLM 155
           G   ++ LSN+ +L     ++A     + +F+ L  L  L+L + T I+G +  N+    
Sbjct: 619 GFISVKALSNIATLEELVLDHAEEVCCIPSFSCLPRLRVLNL-KYTDINGDVTKNISESK 677

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
            L SLN+  C  +TD  +  LS L+ L+ L ++C      G   L  L  L +  L    
Sbjct: 678 SLRSLNLSHCKWVTD--ISVLSSLSTLEELNVNCCNGIRKGWESLGKLPLLRVAILSDTN 735

Query: 216 VTAACLDSLSALGSLFYLNLNRCQ-LSD-------------------DGCEKFSKIGS-- 253
           + A  +  LS+  +L  L   RC+ LSD                   DG +  + +G+  
Sbjct: 736 IAAKDIACLSSCKTLVKLKFFRCEKLSDVTVVYKIQSLEELIVRSCSDGLKGLNDLGTLP 795

Query: 254 --------------LKVLNLGFN------------EITDECLVHLKGLTNLESLNLDSCG 287
                         + V ++G +            E+TD  +  L  +T+LE L+L  CG
Sbjct: 796 RLRFLLLRNVRGSDISVESIGTSKSLVRLHIEMRKELTD--ITPLSNITSLEELSLRECG 853

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAG 346
              EG+  L  L  LK L+L  + + +S L  +    ++ S+NL S   ++D S   ++ 
Sbjct: 854 DNLEGVGTLGKLPRLKSLDLGLSDISNSALNDIFLSRSITSLNLASSWKLTDIS--HISN 911

Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLRNFKNLRSLEICG 405
           L++L+ LNL       +G  AL+ L  L  L+L  A +T      Y+   K+L +L +  
Sbjct: 912 LTALEELNLRRCYPITSGWEALSELPRLRVLNLESASVTTRYDGYYISRCKSLVTLNLES 971

Query: 406 GGLTDAG-VKHIKDLSSL 422
             +TDA  + +IK L  L
Sbjct: 972 CDMTDASCLANIKTLEEL 989



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 94/198 (47%), Gaps = 17/198 (8%)

Query: 150  NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY-LKGLQKLTL 208
            ++  L  LE LN++ C  IT S  + LS L  L+ L +  + VT     Y +   + L  
Sbjct: 908  HISNLTALEELNLRRCYPIT-SGWEALSELPRLRVLNLESASVTTRYDGYYISRCKSLVT 966

Query: 209  LNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
            LNLE C +T A+CL ++  L  L   ++ RC+    G      +  L++LNL  + I DE
Sbjct: 967  LNLESCDMTDASCLANIKTLEEL---HIGRCKELRRGFSPLFTLPRLRILNLICSLIKDE 1023

Query: 268  CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL------ELSDTQVGSSGLRHLS 321
             L  ++    +E LNL  C    E L ++T L  +K +      +  D +  + G R L 
Sbjct: 1024 DLREIQPPHTIEELNLSYC----ENLNDITPLGRIKSIKKLHLRQSHDARRPTEGFRSLL 1079

Query: 322  GLTNLESINL-SFTGISD 338
             L  L  ++L +  G SD
Sbjct: 1080 ELPCLSWVDLNNVCGWSD 1097



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 168/403 (41%), Gaps = 57/403 (14%)

Query: 64   LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH----------------LRGLSN 107
            LS +++    +  L  C  L  L F  C ++SD  + +                L+GL++
Sbjct: 731  LSDTNIAAKDIACLSSCKTLVKLKFFRCEKLSDVTVVYKIQSLEELIVRSCSDGLKGLND 790

Query: 108  L-TSLSFRRNNAITAQG----MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
            L T    R       +G    +++     +LV+L +E    +   +  L  +  LE L++
Sbjct: 791  LGTLPRLRFLLLRNVRGSDISVESIGTSKSLVRLHIEMRKEL-TDITPLSNITSLEELSL 849

Query: 163  KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
            + C    +  +  L  L  LKSL +  S +++S +  +   + +T LNL         + 
Sbjct: 850  RECGDNLEG-VGTLGKLPRLKSLDLGLSDISNSALNDIFLSRSITSLNL-ASSWKLTDIS 907

Query: 223  SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTNLESL 281
             +S L +L  LNL RC     G E  S++  L+VLNL    +T      ++    +L +L
Sbjct: 908  HISNLTALEELNLRRCYPITSGWEALSELPRLRVLNLESASVTTRYDGYYISRCKSLVTL 967

Query: 282  NLDSCGIGDEG-LVNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
            NL+SC + D   L N+  L  L   +C EL        G   L  L  L  +NL  + I 
Sbjct: 968  NLESCDMTDASCLANIKTLEELHIGRCKELR------RGFSPLFTLPRLRILNLICSLIK 1021

Query: 338  DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
            D  LR++    +++ LN          L+   +L  +T L     RI      +LR   +
Sbjct: 1022 DEDLREIQPPHTIEELN----------LSYCENLNDITPL----GRIKSIKKLHLRQSHD 1067

Query: 398  LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
             R            G + + +L  L+ ++L+  C  +D  +EL
Sbjct: 1068 ARR--------PTEGFRSLLELPCLSWVDLNNVCGWSDVYVEL 1102



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 120/485 (24%), Positives = 191/485 (39%), Gaps = 113/485 (23%)

Query: 83  LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
           L SL+ + C +I+   +  +  L+ L  L+   +  +T+ G   F  L  L    L   T
Sbjct: 464 LVSLNLSHCKKIT--SISAIASLTALEELNIDNSCNVTS-GWNVFGTLHQLRVATLSN-T 519

Query: 143 RIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
           RI+   + ++     L +LN+ +C  ITD  +  LS +T L+ L + C      GI  L 
Sbjct: 520 RINDENIRHVSECKSLNTLNLAFCKDITD--VTALSKITMLEELNLDCCPNIRKGIETLG 577

Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRC----------------QLSD 242
            L K  +L+++ C +        S LG   SL  LNL R                 +L  
Sbjct: 578 KLPKARILSMKECYMGDGYAQQCSILGNSKSLVKLNLERSMGFISVKALSNIATLEELVL 637

Query: 243 DGCEK------FSKIGSLKVLNLGFNEITDEC--------------LVHLKGLTN----- 277
           D  E+      FS +  L+VLNL + +I  +               L H K +T+     
Sbjct: 638 DHAEEVCCIPSFSCLPRLRVLNLKYTDINGDVTKNISESKSLRSLNLSHCKWVTDISVLS 697

Query: 278 ----LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL---------------- 317
               LE LN++ C    +G  +L  L  L+   LSDT + +  +                
Sbjct: 698 SLSTLEELNVNCCNGIRKGWESLGKLPLLRVAILSDTNIAAKDIACLSSCKTLVKLKFFR 757

Query: 318 -RHLSGLTNLESIN----LSFTGISDG--------------------------SLRKLAG 346
              LS +T +  I     L     SDG                          S+  +  
Sbjct: 758 CEKLSDVTVVYKIQSLEELIVRSCSDGLKGLNDLGTLPRLRFLLLRNVRGSDISVESIGT 817

Query: 347 LSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
             SL  L+++ R ++TD  +  L+++T L  L L        G   L     L+SL++  
Sbjct: 818 SKSLVRLHIEMRKELTD--ITPLSNITSLEELSLRECGDNLEGVGTLGKLPRLKSLDL-- 873

Query: 406 GGLTDAGVKHIKDL---SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
            GL+D     + D+    S+T LNL+ +  LTD  +  IS LT L  LN+      ++G 
Sbjct: 874 -GLSDISNSALNDIFLSRSITSLNLASSWKLTD--ISHISNLTALEELNLRRCYPITSGW 930

Query: 463 RHLNH 467
             L+ 
Sbjct: 931 EALSE 935


>gi|124004058|ref|ZP_01688905.1| Rab family protein [Microscilla marina ATCC 23134]
 gi|123990637|gb|EAY30117.1| Rab family protein [Microscilla marina ATCC 23134]
          Length = 1165

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 107/377 (28%), Positives = 172/377 (45%), Gaps = 66/377 (17%)

Query: 97  GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGL 154
           G L  L+ L+ LT LS   N       ++   GL+   KLDL   +   +H     LK L
Sbjct: 193 GDLAPLQHLTCLTMLSLHHNKISDLAPLQKLRGLL---KLDLSNNQLDDLHP----LKSL 245

Query: 155 MKLESLNIKWCNCITD--------------------SDMKPLSGLTNLKSLQISCSKVTD 194
             L+SL ++  N I+D                    +D+ PL  L NL+SL +  ++++D
Sbjct: 246 NSLQSLVLR-NNQISDLTPLQALHSLQLIVLRDNPVTDLTPLQSLRNLQSLDLRNNQISD 304

Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAAC--------------------LDSLSALGSLFYLN 234
             +  L+ L  L  ++L   P+                        L  L  L +L  ++
Sbjct: 305 --LTPLQNLSSLQSIDLRHNPINDLLPLQNLPNLQSIDLKYNHINDLAPLQNLPNLESID 362

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           L+  Q+SD        + +L+ ++L  N++    L  L+ L NLES++L    I D  L 
Sbjct: 363 LSDNQISD--LTPLQNLSNLQSIDLSNNQVN--HLASLQYLPNLESIDLSDNQIND--LA 416

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
            L  L +L+ ++LS+ Q+    L  L  L NLESI+LS   ISD  L  L  L SL+S+N
Sbjct: 417 PLQNLGDLQSIDLSNNQI--HDLTPLQNLPNLESIDLSDNQISD--LTPLQNLGSLQSIN 472

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
           L   Q++D  L+ L +L  L  ++L   +I+D   A L+   +L+S+++    +      
Sbjct: 473 LRNNQVSD--LSPLQALHDLQAINLSDNQISD--LAPLQKLPHLKSIDLRDNQIEVFPEH 528

Query: 415 HIKDLSSLTLLNLSQNC 431
            I +   LT L+L  N 
Sbjct: 529 LITNCPQLTSLHLYHNP 545



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 148/311 (47%), Gaps = 49/311 (15%)

Query: 172 DMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           D+ PL  LT L  L +  +K++D + +  L+GL KL L N +        L  L +L SL
Sbjct: 194 DLAPLQHLTCLTMLSLHHNKISDLAPLQKLRGLLKLDLSNNQ-----LDDLHPLKSLNSL 248

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
             L L   Q+SD        + SL+++ L  N +TD  L  L+ L NL+SL+L +  I D
Sbjct: 249 QSLVLRNNQISD--LTPLQALHSLQLIVLRDNPVTD--LTPLQSLRNLQSLDLRNNQISD 304

Query: 291 EGLVNLTGLCNLKCLELSDTQVGS--------------------SGLRHLSGLTNLESIN 330
             L  L  L +L+ ++L    +                      + L  L  L NLESI+
Sbjct: 305 --LTPLQNLSSLQSIDLRHNPINDLLPLQNLPNLQSIDLKYNHINDLAPLQNLPNLESID 362

Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
           LS   ISD  L  L  LS+L+S++L   Q+    LA+L  L  L  +DL   +I D   A
Sbjct: 363 LSDNQISD--LTPLQNLSNLQSIDLSNNQVN--HLASLQYLPNLESIDLSDNQIND--LA 416

Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT---LELISGLTGL 447
            L+N  +L+S+++            I DL+ L  L   ++ +L+D     L  +  L  L
Sbjct: 417 PLQNLGDLQSIDLSNN--------QIHDLTPLQNLPNLESIDLSDNQISDLTPLQNLGSL 468

Query: 448 VSLNVSNSRIT 458
            S+N+ N++++
Sbjct: 469 QSINLRNNQVS 479



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 151/328 (46%), Gaps = 61/328 (18%)

Query: 171 SDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTA----------- 218
           SD+KPL  L NL+ L +S ++V D + +  L GLQ + L   +   +T            
Sbjct: 127 SDLKPLQNLANLQMLDMSDNRVADLTPLQNLPGLQSIVLSKNKVRDLTPLQHLTGLHTLL 186

Query: 219 ------ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
                   L  L  L  L  L+L+  ++SD       K+  L  L+L  N++ D  L  L
Sbjct: 187 LHYNKIGDLAPLQHLTCLTMLSLHHNKISD--LAPLQKLRGLLKLDLSNNQLDD--LHPL 242

Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
           K L +L+SL L +  I D  L  L  L +L+ + L D  V  + L  L  L NL+S++L 
Sbjct: 243 KSLNSLQSLVLRNNQISD--LTPLQALHSLQLIVLRDNPV--TDLTPLQSLRNLQSLDLR 298

Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITD--------------------TGLAALTSLT 372
              ISD  L  L  LSSL+S++L    I D                      LA L +L 
Sbjct: 299 NNQISD--LTPLQNLSSLQSIDLRHNPINDLLPLQNLPNLQSIDLKYNHINDLAPLQNLP 356

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
            L  +DL   +I+D     L+N  NL+S++     L++  V H   L+SL  L   ++ +
Sbjct: 357 NLESIDLSDNQISDLTP--LQNLSNLQSID-----LSNNQVNH---LASLQYLPNLESID 406

Query: 433 LTDKT---LELISGLTGLVSLNVSNSRI 457
           L+D     L  +  L  L S+++SN++I
Sbjct: 407 LSDNQINDLAPLQNLGDLQSIDLSNNQI 434



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 125/295 (42%), Gaps = 73/295 (24%)

Query: 57  SSLLSVDLSGSDVTDSGLI--------------HLKDCSNLQSLDFNFCIQISDGGLEHL 102
           SSL S+DL  + + D   +              H+ D + LQ+L     I +SD  +  L
Sbjct: 312 SSLQSIDLRHNPINDLLPLQNLPNLQSIDLKYNHINDLAPLQNLPNLESIDLSDNQISDL 371

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
             L NL+                      NL  +DL      H  L +L+ L  LES+++
Sbjct: 372 TPLQNLS----------------------NLQSIDLSNNQVNH--LASLQYLPNLESIDL 407

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
              N I  +D+ PL  L +L+S+ +S +++ D     L  LQ L   NLE   ++   + 
Sbjct: 408 S-DNQI--NDLAPLQNLGDLQSIDLSNNQIHD-----LTPLQNLP--NLESIDLSDNQIS 457

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
            L+ L +L                     GSL+ +NL  N+++D  L  L+ L +L+++N
Sbjct: 458 DLTPLQNL---------------------GSLQSINLRNNQVSD--LSPLQALHDLQAIN 494

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           L    I D  L  L  L +LK ++L D Q+       ++    L S++L    I 
Sbjct: 495 LSDNQISD--LAPLQKLPHLKSIDLRDNQIEVFPEHLITNCPQLTSLHLYHNPIQ 547


>gi|326436437|gb|EGD82007.1| hypothetical protein PTSG_11905 [Salpingoeca sp. ATCC 50818]
          Length = 1127

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 105/437 (24%), Positives = 195/437 (44%), Gaps = 27/437 (6%)

Query: 23  VSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSN 82
           V L  FR   + ++ +  Y GV  ++   + +  +++ ++DL+G+D+T   L+     +N
Sbjct: 262 VWLLQFRWDTVTNITIRGYEGV--EFPLAVLNAMTNVHTIDLAGNDIT--RLV----PTN 313

Query: 83  LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL--DLER 140
               + NF +  S            +T+L   RN +++       A + NL  L  D  +
Sbjct: 314 AAVDNKNFTLGDS------------ITTLDVTRN-SLSELPQATLAAMPNLTHLTWDGNQ 360

Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
              I  G+        L +L+++  N I +      + L +L+ L +S ++++   +   
Sbjct: 361 LAEIEPGV--FAATTNLTTLSLR-DNRILNVVAGTFAHLNSLRDLDLSDNRISSVAVDAF 417

Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
            GL  + +L+L    +++    + + L SL  L+L+  ++S      F+ + SL  L+LG
Sbjct: 418 AGLFSVVVLHLNDNRISSVVAHTFADLVSLRELDLSNNRISSIAAFAFAGLTSLVELHLG 477

Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
            N + +        L++L  L+L +  I +   +    L +L  L LS+ ++ S      
Sbjct: 478 NNTVFEVVADAFADLSSLPKLDLSNNRISNVSALAFADLTSLTELRLSNNRISSIVENAF 537

Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
           SGLT+L ++++ F  IS      L     L+SLNLD   +         +LT L+HL L 
Sbjct: 538 SGLTSLMTLDVHFNRISTLDENALISTFKLESLNLDHNPVDTFPPRLFVNLTRLSHLRLT 597

Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
             R T    +   +   LR L +     T+  V     L+ L  L L+ N ++T     L
Sbjct: 598 STRATTLPTSLFEHNTRLRELWLFHNRFTEIEVGTFDKLTRLVFLTLTGN-DITHLPSML 656

Query: 441 ISGLTGLVSLNVSNSRI 457
            + LT L  L +SN+ +
Sbjct: 657 FARLTRLKELYISNNDV 673



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 103/356 (28%), Positives = 147/356 (41%), Gaps = 43/356 (12%)

Query: 85  SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
           SL  N  + +  G   HL  L +L  LS   +N I++  + AFAGL ++V L L    RI
Sbjct: 379 SLRDNRILNVVAGTFAHLNSLRDL-DLS---DNRISSVAVDAFAGLFSVVVLHLND-NRI 433

Query: 145 HGGLVN-LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI---SCSKVTDSGIAYL 200
              + +    L+ L  L++   N I+       +GLT+L  L +   +  +V     A L
Sbjct: 434 SSVVAHTFADLVSLRELDLS-NNRISSIAAFAFAGLTSLVELHLGNNTVFEVVADAFADL 492

Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
             L KL L N     V+A    + + L SL  L L+  ++S      FS + SL  L++ 
Sbjct: 493 SSLPKLDLSNNRISNVSAL---AFADLTSLTELRLSNNRISSIVENAFSGLTSLMTLDVH 549

Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGI---GDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
           FN I+      L     LESLNLD   +        VNLT L +L+      T + +S  
Sbjct: 550 FNRISTLDENALISTFKLESLNLDHNPVDTFPPRLFVNLTRLSHLRLTSTRATTLPTSLF 609

Query: 318 RHLSGLTNLESINLSFTGISDGSLRKL---------------------AGLSSLKSL--- 353
            H + L  L   +  FT I  G+  KL                     A L+ LK L   
Sbjct: 610 EHNTRLRELWLFHNRFTEIEVGTFDKLTRLVFLTLTGNDITHLPSMLFARLTRLKELYIS 669

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409
           N D R +       L SLT LT   L   RI D  A        L ++++    LT
Sbjct: 670 NNDVRTVDPNAFRGLESLTTLT---LVRNRINDLHADTFTTATALENVDLSDNDLT 722



 Score = 42.0 bits (97), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 115/258 (44%), Gaps = 13/258 (5%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS--NLTSLSFR 114
           +SL+ + L  + V +       D S+L  LD      +S+  + ++  L+  +LTSL+  
Sbjct: 469 TSLVELHLGNNTVFEVVADAFADLSSLPKLD------LSNNRISNVSALAFADLTSLTEL 522

Query: 115 R--NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESLNIKWCNCITDS 171
           R  NN I++    AF+GL +L+ LD+    RI     N L    KLESLN+   N +   
Sbjct: 523 RLSNNRISSIVENAFSGLTSLMTLDVH-FNRISTLDENALISTFKLESLNLD-HNPVDTF 580

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
             +    LT L  L+++ ++ T    +  +   +L  L L     T   + +   L  L 
Sbjct: 581 PPRLFVNLTRLSHLRLTSTRATTLPTSLFEHNTRLRELWLFHNRFTEIEVGTFDKLTRLV 640

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
           +L L    ++      F+++  LK L +  N++        +GL +L +L L    I D 
Sbjct: 641 FLTLTGNDITHLPSMLFARLTRLKELYISNNDVRTVDPNAFRGLESLTTLTLVRNRINDL 700

Query: 292 GLVNLTGLCNLKCLELSD 309
                T    L+ ++LSD
Sbjct: 701 HADTFTTATALENVDLSD 718


>gi|87310922|ref|ZP_01093048.1| serine/threonine protein kinase [Blastopirellula marina DSM 3645]
 gi|87286437|gb|EAQ78345.1| serine/threonine protein kinase [Blastopirellula marina DSM 3645]
          Length = 897

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 94/193 (48%), Gaps = 3/193 (1%)

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
           T+L  L L S    D  L N     NLK L    +Q+  + L H   L+ L  +++ ++ 
Sbjct: 681 THLTELALGS-EFTDAALQNFRHNKNLKTLYFLHSQITGAPL-HDFDLSQLTHVDVRYSQ 738

Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
              G++  L     L  L+L    + D  LA LT L+ L HL L+  RI+D+G A +   
Sbjct: 739 FDGGNVIVLQNSPELIELHLTNTNVQDEDLALLTGLSKLQHLHLYDTRISDAGLAQIGKL 798

Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
             ++ L I    +TD G+ H+  L  L +LN S N NLTD ++  ++ L  L  L V  +
Sbjct: 799 TKMKILSIDKTEITDKGIAHLTTLHDLEVLNAS-NTNLTDVSVNHLAQLPRLQRLQVQGT 857

Query: 456 RITSAGLRHLNHA 468
           +IT   +  L+ A
Sbjct: 858 QITRQAIEKLHAA 870



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 93/201 (46%), Gaps = 2/201 (0%)

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           I +++++  +  T+L  L +  S+ TD+ +   +  + L  L      +T A L     L
Sbjct: 669 IKEAELQIFAETTHLTELALG-SEFTDAALQNFRHNKNLKTLYFLHSQITGAPLHDFD-L 726

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
             L ++++   Q              L  L+L    + DE L  L GL+ L+ L+L    
Sbjct: 727 SQLTHVDVRYSQFDGGNVIVLQNSPELIELHLTNTNVQDEDLALLTGLSKLQHLHLYDTR 786

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           I D GL  +  L  +K L +  T++   G+ HL+ L +LE +N S T ++D S+  LA L
Sbjct: 787 ISDAGLAQIGKLTKMKILSIDKTEITDKGIAHLTTLHDLEVLNASNTNLTDVSVNHLAQL 846

Query: 348 SSLKSLNLDARQITDTGLAAL 368
             L+ L +   QIT   +  L
Sbjct: 847 PRLQRLQVQGTQITRQAIEKL 867



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 3/206 (1%)

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  ++ +   + F++   L  L LG +E TD  L + +   NL++L      I    L
Sbjct: 663 SLNDPRIKEAELQIFAETTHLTELALG-SEFTDAALQNFRHNKNLKTLYFLHSQITGAPL 721

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
            +   L  L  +++  +Q     +  L     L  ++L+ T + D  L  L GLS L+ L
Sbjct: 722 HDF-DLSQLTHVDVRYSQFDGGNVIVLQNSPELIELHLTNTNVQDEDLALLTGLSKLQHL 780

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
           +L   +I+D GLA +  LT +  L +    ITD G A+L    +L  L      LTD  V
Sbjct: 781 HLYDTRISDAGLAQIGKLTKMKILSIDKTEITDKGIAHLTTLHDLEVLNASNTNLTDVSV 840

Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLE 439
            H+  L  L  L + Q   +T + +E
Sbjct: 841 NHLAQLPRLQRLQV-QGTQITRQAIE 865



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 1/178 (0%)

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
           + +D   + F    +LK L    ++IT   L H   L+ L  +++         ++ L  
Sbjct: 691 EFTDAALQNFRHNKNLKTLYFLHSQITGAPL-HDFDLSQLTHVDVRYSQFDGGNVIVLQN 749

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
              L  L L++T V    L  L+GL+ L+ ++L  T ISD  L ++  L+ +K L++D  
Sbjct: 750 SPELIELHLTNTNVQDEDLALLTGLSKLQHLHLYDTRISDAGLAQIGKLTKMKILSIDKT 809

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
           +ITD G+A LT+L  L  L+     +TD    +L     L+ L++ G  +T   ++ +
Sbjct: 810 EITDKGIAHLTTLHDLEVLNASNTNLTDVSVNHLAQLPRLQRLQVQGTQITRQAIEKL 867



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 29/153 (18%)

Query: 340 SLRKLAGLS----SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
           S+R+L  L      L   +L+  +I +  L      T LT L L G+  TD+     R+ 
Sbjct: 645 SIRRLDQLPDEPFELTQASLNDPRIKEAELQIFAETTHLTELAL-GSEFTDAALQNFRHN 703

Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL--SQ---------------------NCN 432
           KNL++L      +T A + H  DLS LT +++  SQ                     N N
Sbjct: 704 KNLKTLYFLHSQITGAPL-HDFDLSQLTHVDVRYSQFDGGNVIVLQNSPELIELHLTNTN 762

Query: 433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           + D+ L L++GL+ L  L++ ++RI+ AGL  +
Sbjct: 763 VQDEDLALLTGLSKLQHLHLYDTRISDAGLAQI 795



 Score = 42.7 bits (99), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 38/190 (20%)

Query: 66  GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN-----NAIT 120
           GS+ TD+ L + +   NL++L F    QI+   L H   LS LT +  R +     N I 
Sbjct: 689 GSEFTDAALQNFRHNKNLKTLYF-LHSQITGAPL-HDFDLSQLTHVDVRYSQFDGGNVIV 746

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
            Q          L++L L         L  L GL KL+ L++ +   I+D+ +  +  LT
Sbjct: 747 LQNSP------ELIELHLTNTNVQDEDLALLTGLSKLQHLHL-YDTRISDAGLAQIGKLT 799

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQ------------------------KLTLLNLEGCPV 216
            +K L I  +++TD GIA+L  L                         +L  L ++G  +
Sbjct: 800 KMKILSIDKTEITDKGIAHLTTLHDLEVLNASNTNLTDVSVNHLAQLPRLQRLQVQGTQI 859

Query: 217 TAACLDSLSA 226
           T   ++ L A
Sbjct: 860 TRQAIEKLHA 869


>gi|449530965|ref|XP_004172462.1| PREDICTED: LOW QUALITY PROTEIN: F-box/LRR-repeat protein 3-like
           [Cucumis sativus]
          Length = 661

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 125/446 (28%), Positives = 196/446 (43%), Gaps = 61/446 (13%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
           L+ LCL     + D  + +IA++   L S+DLS   +T+  L  +    +L+ L    C 
Sbjct: 187 LKLLCLNWCLHITDLGVGLIATKCKELRSLDLSFLPITEKCLPTILQLQHLEELILEECH 246

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNL 151
            I D GLE L+      SL F                      L+L RC  I H GL +L
Sbjct: 247 GIDDEGLEALQRNCKRNSLKF----------------------LNLSRCPSISHSGLSSL 284

Query: 152 -KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ-KLTLL 209
             G   L+ LN+ + + IT    K L   + L+S+++ C  +T SG+  L   +  L  L
Sbjct: 285 IIGSEDLQKLNLSYGSSITTDMAKCLHNFSGLQSIKLDCCSLTTSGVKPLXNWRASLKEL 344

Query: 210 NLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
           +L  C  VT  CL       S+      + +  D  C +    GS+       N IT  C
Sbjct: 345 SLSKCAGVTDECL-------SILVQKHKQLRKLDITCCRKITYGSI-------NSITSSC 390

Query: 269 LVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN-LKCLELSDTQVGSSGLRHLSGLTNL 326
                  + L SL ++SC  +  E  V +   C  L+ L+L+D ++ + GL+ +S  + L
Sbjct: 391 -------SFLVSLKMESCSLVPREAYVLIGQRCPYLEELDLTDNEIDNEGLKSISKCSRL 443

Query: 327 ESINLSFT-GISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL---- 379
             + L     I+D  L  +A     +K L+L  +  ITD G+AA     G   L++    
Sbjct: 444 SVLKLGICLNINDDGLCHIASACPKIKELDLYRSTGITDRGIAATAG--GCPALEMINIA 501

Query: 380 FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIK-DLSSLTLLNLSQNCNLTDK- 436
           +  +ITDS    L    NL++LEI G   ++  G+  I      LT+L++ +  N+ D  
Sbjct: 502 YNDKITDSSLISLSKCLNLKALEIRGCCCISSIGLSAIAMGCKQLTVLDIKKCVNVNDDG 561

Query: 437 TLELISGLTGLVSLNVSNSRITSAGL 462
            L L      L  +N+S   +T  GL
Sbjct: 562 MLPLAQFSHNLKQINLSYCSVTDVGL 587


>gi|434385223|ref|YP_007095834.1| Leucine Rich Repeat (LRR)-containing protein [Chamaesiphon minutus
           PCC 6605]
 gi|428016213|gb|AFY92307.1| Leucine Rich Repeat (LRR)-containing protein [Chamaesiphon minutus
           PCC 6605]
          Length = 362

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 84/256 (32%), Positives = 137/256 (53%), Gaps = 31/256 (12%)

Query: 171 SDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
           SD++P++ LTNL+ L +    +TD + +A LK L  L         + +  L  L  LGS
Sbjct: 98  SDLRPIASLTNLRKLSLYSHNITDLTPLANLKQLDALV--------INSNKLTDLKPLGS 149

Query: 230 LFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
           L  LN       +    +  +K+ +LK L L ++ I D  +  +K LT L  ++     I
Sbjct: 150 LNNLNDLGLLGRNIVNIKPIAKLTNLKKLTLWYSSIQD--IKAVKNLTQLTEVSFIDTKI 207

Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
            D  L  L  L +L  LE+++++V  + +R LSGLTNL+ I L+   IS+  ++ LA L+
Sbjct: 208 AD--LSPLANLKSLTTLEVTNSKV--TDIRALSGLTNLKRIVLNNNQISN--IQPLARLT 261

Query: 349 SLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL-EICGG 406
           +LKSLNL+  +I++ T LA LTSLTG   ++L   +I D         + + +L ++ G 
Sbjct: 262 NLKSLNLNFNRISNLTPLAGLTSLTG---INLSDNQIVD--------IQPIAALTQLVGL 310

Query: 407 GLTDAGVKHIKDLSSL 422
            L +  + +IK L+ L
Sbjct: 311 NLNNNKITNIKPLAKL 326



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 89/288 (30%), Positives = 134/288 (46%), Gaps = 29/288 (10%)

Query: 92  IQISD---GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
           IQI D     LE    LS  T L            ++  A L NL KL L         +
Sbjct: 69  IQIPDCRAAALE----LSQRTELLTSSPTPADISDLRPIASLTNLRKLSLY-----SHNI 119

Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLT 207
            +L  L  L+ L+    N    +D+KPL  L NL  L +    + +   IA L  L+KLT
Sbjct: 120 TDLTPLANLKQLDALVINSNKLTDLKPLGSLNNLNDLGLLGRNIVNIKPIAKLTNLKKLT 179

Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
           L       + A  + +L+ L  + +++     LS       + + SL  L +  +++TD 
Sbjct: 180 LWYSSIQDIKA--VKNLTQLTEVSFIDTKIADLSP-----LANLKSLTTLEVTNSKVTD- 231

Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
            +  L GLTNL+ + L++  I +  +  L  L NLK L L+  ++  S L  L+GLT+L 
Sbjct: 232 -IRALSGLTNLKRIVLNNNQISN--IQPLARLTNLKSLNLNFNRI--SNLTPLAGLTSLT 286

Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALTSLTGL 374
            INLS   I D  ++ +A L+ L  LNL+  +IT+   LA L  L  L
Sbjct: 287 GINLSDNQIVD--IQPIAALTQLVGLNLNNNKITNIKPLAKLQKLETL 332


>gi|386336010|ref|YP_006032180.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
 gi|334198460|gb|AEG71644.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
          Length = 1053

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 108/378 (28%), Positives = 172/378 (45%), Gaps = 7/378 (1%)

Query: 57   SSLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
             S+  +DLSG   S V+++GL  L     L+SLD +   +I D  ++ L   ++LTSL+ 
Sbjct: 647  PSVRRLDLSGCTGSAVSEAGLAVLARLP-LESLDLSGT-RIGDREVQALASSTSLTSLNL 704

Query: 114  RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC-ITDSD 172
               N I   G +A      L  L++        G+  L     L SL ++     I ++ 
Sbjct: 705  S-GNRIGDAGARALGRNTVLTALNVSANPIRDTGVQALADSRSLTSLELRGIGIGIGEAS 763

Query: 173  MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
            +  L+  T L+SL IS + +++   A L   Q L  L    C +T      L+ + SL  
Sbjct: 764  IAALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKANACGLTNGMAQQLARIRSLRT 823

Query: 233  LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
            L +    + D G    ++  SL+ LNL  N IT + L  L+    L SL++   G GD G
Sbjct: 824  LEVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLCPLELSRTLTSLDVSGIGCGDRG 883

Query: 293  LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
             + L+    L  L+L    +GS+G + L+    L S++L    I   + + LA    L S
Sbjct: 884  ALLLSKNRVLTSLKLGFNGIGSAGAQRLAANRTLISLDLRGNTIDVDAAKALANTGRLTS 943

Query: 353  LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
            LN+   ++ D   +AL     LT LD+   R++   A  L     L SL I    +   G
Sbjct: 944  LNVSDCKLDDAAASALAESLTLTSLDVSVNRLSGRAAQALAGNATLTSLNISHNHIGPDG 1003

Query: 413  VKHIKDLSSLTLLNLSQN 430
             + + +  SLT+L+   N
Sbjct: 1004 ARALAESPSLTVLDARAN 1021



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 99/355 (27%), Positives = 155/355 (43%), Gaps = 7/355 (1%)

Query: 44   VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
            + D+ +  +AS  +SL S++LSG+ + D+G   L   + L +L+ +    I D G++ L 
Sbjct: 685  IGDREVQALASS-TSLTSLNLSGNRIGDAGARALGRNTVLTALNVS-ANPIRDTGVQALA 742

Query: 104  GLSNLTSLSFRRNN-AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
               +LTSL  R     I    + A A    L  LD+            L     L SL  
Sbjct: 743  DSRSLTSLELRGIGIGIGEASIAALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKA 802

Query: 163  KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
              C  +T+   + L+ + +L++L++  + + D+G+  +     L  LNL   P+T   L 
Sbjct: 803  NACG-LTNGMAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLC 861

Query: 223  SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
             L    +L  L+++     D G    SK   L  L LGFN I       L     L SL+
Sbjct: 862  PLELSRTLTSLDVSGIGCGDRGALLLSKNRVLTSLKLGFNGIGSAGAQRLAANRTLISLD 921

Query: 283  LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
            L    I  +    L     L  L +SD ++  +    L+    L S+++S   +S  + +
Sbjct: 922  LRGNTIDVDAAKALANTGRLTSLNVSDCKLDDAAASALAESLTLTSLDVSVNRLSGRAAQ 981

Query: 343  KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
             LAG ++L SLN+    I   G  AL     LT LD   AR  D G A  R  +N
Sbjct: 982  ALAGNATLTSLNISHNHIGPDGARALAESPSLTVLD---ARANDIGEAGARALEN 1033



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 135/315 (42%), Gaps = 14/315 (4%)

Query: 23   VSLEAFRDCALQDLC----------LGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDS 72
            VS    RD  +Q L            G   G+ +  +  +AS  + L S+D+S +D+++ 
Sbjct: 728  VSANPIRDTGVQALADSRSLTSLELRGIGIGIGEASIAALASN-TVLRSLDISSNDLSEQ 786

Query: 73   GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
                L     L SL  N C  +++G  + L  + +L +L    +N+I   G+ A A   +
Sbjct: 787  SAAELARNQTLASLKANAC-GLTNGMAQQLARIRSLRTLEVG-SNSIGDTGVLAIARNAS 844

Query: 133  LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
            L  L+L        GL  L+    L SL++    C  D     LS    L SL++  + +
Sbjct: 845  LRTLNLSHNPITLQGLCPLELSRTLTSLDVSGIGC-GDRGALLLSKNRVLTSLKLGFNGI 903

Query: 193  TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
              +G   L   + L  L+L G  +      +L+  G L  LN++ C+L D      ++  
Sbjct: 904  GSAGAQRLAANRTLISLDLRGNTIDVDAAKALANTGRLTSLNVSDCKLDDAAASALAESL 963

Query: 253  SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
            +L  L++  N ++      L G   L SLN+    IG +G   L    +L  L+     +
Sbjct: 964  TLTSLDVSVNRLSGRAAQALAGNATLTSLNISHNHIGPDGARALAESPSLTVLDARANDI 1023

Query: 313  GSSGLRHLSGLTNLE 327
            G +G R L   T ++
Sbjct: 1024 GEAGARALENNTRMQ 1038



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 100/253 (39%), Gaps = 28/253 (11%)

Query: 200 LKGLQKLTLLNLEGCPVT------AACLDSLSALGSLFYL--------NLNRCQLSDDGC 245
           LKG   LTL +L+  P T      +AC  S  + G++ YL        N+    + DDG 
Sbjct: 113 LKG--NLTLTDLKALPATLRHLDLSACTGSAKSSGAIAYLAGLPLESLNVAGADIGDDGA 170

Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG---LCNL 302
              +   SLK LN     I       L     L SL+L   GIGDEG   L G   L NL
Sbjct: 171 RLLAANPSLKTLNAANGGIGAAGARALAESPVLTSLDLTQNGIGDEGARALAGSRSLTNL 230

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L    T VG+  L     LT L+  NL     +D  L +          +  A +IT 
Sbjct: 231 AVLNCLVTDVGAQALAGNRTLTALDLGNLITE--TDNELEQ-------AGYDRTANEITA 281

Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
            G  AL     LT L + G    D G   L   + L SL +    +T A    +     L
Sbjct: 282 QGAWALAQNRSLTSLSIQGNLCGDGGVQALARNRTLTSLNVAYTDMTPASATELARNPVL 341

Query: 423 TLLNLSQNCNLTD 435
           T L++  N  L D
Sbjct: 342 TSLSVRWNYGLGD 354



 Score = 42.7 bits (99), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 150/381 (39%), Gaps = 43/381 (11%)

Query: 65  SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG--LEHLRGLSNLTSLSFRRNNAITAQ 122
           S     D+G  H  D +  Q     +    S  G  L  L GL++L  L     N ++A 
Sbjct: 14  SAPATPDTGARHGPDQTGEQPA---YAPARSSAGVALSPLGGLASL-RLDAASANTVSAP 69

Query: 123 GMKAFAGLINLVKLDLERCTR--IHG--GLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
            +   A   +     L+R T   +H    L  L     L SL +K    +TD    P + 
Sbjct: 70  RILPPAPCHDPRAAALQRVTHLSVHDRRALSELHNYPNLTSLQLKGNLTLTDLKALPAT- 128

Query: 179 LTNLKSLQISC---SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
              L+ L +S    S  +   IAYL GL  L  LN+ G  +       L+A  SL  LN 
Sbjct: 129 ---LRHLDLSACTGSAKSSGAIAYLAGL-PLESLNVAGADIGDDGARLLAANPSLKTLNA 184

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG---LTNLESLNLDSCGIGDEG 292
               +   G    ++   L  L+L  N I DE    L G   LTNL  LN   C + D G
Sbjct: 185 ANGGIGAAGARALAESPVLTSLDLTQNGIGDEGARALAGSRSLTNLAVLN---CLVTDVG 241

Query: 293 LVNLTGLCNLKCLEL------SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
              L G   L  L+L      +D ++  +G             + +   I+      LA 
Sbjct: 242 AQALAGNRTLTALDLGNLITETDNELEQAG------------YDRTANEITAQGAWALAQ 289

Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI-CG 405
             SL SL++      D G+ AL     LT L++    +T + A  L     L SL +   
Sbjct: 290 NRSLTSLSIQGNLCGDGGVQALARNRTLTSLNVAYTDMTPASATELARNPVLTSLSVRWN 349

Query: 406 GGLTDAGVKHIKDLSSLTLLN 426
            GL DAGV  +    SLTLL+
Sbjct: 350 YGLGDAGVVELAKSPSLTLLD 370


>gi|158429242|pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
          Length = 462

 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 112/374 (29%), Positives = 174/374 (46%), Gaps = 64/374 (17%)

Query: 92  IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
           I  S+  L  +  L NLT L      NN I    +   A L NL  L L      +  + 
Sbjct: 68  INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGLTL-----FNNQIT 120

Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
           ++  L  L +LN    +  T SD+  LSGLT+L+ L  S ++VTD     LK L  LT  
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTD-----LKPLANLT-- 173

Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
            LE   +++  +  +S L                   K + + SL   N   N+I+D  +
Sbjct: 174 TLERLDISSNKVSDISVLA------------------KLTNLESLIATN---NQISD--I 210

Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
             L  LTNL+ L+L+   + D G   L  L NL  L+L++ Q+  S L  LSGLT L  +
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTEL 266

Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
            L    IS+  +  LAGL++L +L L+  Q+ D  ++ +++L  LT+L L+   I+D   
Sbjct: 267 KLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD--I 320

Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449
           + + +   L+ L      ++D  V  + +L+++  L+   N          IS LT L +
Sbjct: 321 SPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ---------ISDLTPLAN 369

Query: 450 LNVSNSRITSAGLR 463
           L    +RIT  GL 
Sbjct: 370 L----TRITQLGLN 379



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 120/249 (48%), Gaps = 42/249 (16%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 57  DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 109

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+  + Q+TD
Sbjct: 110 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTD 165

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 166 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 223

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 224 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 278

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 279 LAGLTALTN 287


>gi|290980195|ref|XP_002672818.1| predicted protein [Naegleria gruberi]
 gi|284086397|gb|EFC40074.1| predicted protein [Naegleria gruberi]
          Length = 350

 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 124/254 (48%), Gaps = 26/254 (10%)

Query: 236 NRCQLS------DDGCEKFSK---IGSLKVLNLGFNEITDECLVHLKG-------LTNLE 279
           NR +LS      D   E   K   IG++  L L  N +   C +  KG       LT L 
Sbjct: 70  NRAKLSVDLEVEDKIVENIVKSGIIGNIVELKLVGNSV---CRIRTKGAQLISQNLTQLT 126

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS-- 337
           +L+L    IGDEG  +++ + NL  L +   ++G SG   + G+ NL S++LS++  S  
Sbjct: 127 NLDLSYNSIGDEGAKHISTMANLTSLNICSNRIGYSGSFSVFGMKNLISLDLSYSAFSLE 186

Query: 338 -DGSLRK--LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLR 393
            D + +   ++   +LKSL +    + D  +  ++ +  LT LD+     ++  G  ++ 
Sbjct: 187 NDETFQMNVISQSKTLKSLRVRYSDLNDRSVEKISEIKQLTKLDVSNCPNLSVVGVKFIS 246

Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
             +NL +L I    + D G K I ++S LT LN+S    + +     IS L  L +LN+S
Sbjct: 247 QMENLNNLNISCNYIGDEGAKIISEMSQLTDLNISY-SKIGNTGAMYISQLGKLTTLNIS 305

Query: 454 NSRITSAGLRHLNH 467
            + I + G + L+H
Sbjct: 306 TNNIGAEGAKSLSH 319



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 110/235 (46%), Gaps = 31/235 (13%)

Query: 238 CQLSDDGCEKFSK-IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
           C++   G +  S+ +  L  L+L +N I DE   H+  + NL SLN+ S  IG  G  ++
Sbjct: 108 CRIRTKGAQLISQNLTQLTNLDLSYNSIGDEGAKHISTMANLTSLNICSNRIGYSGSFSV 167

Query: 297 TGLCNLKCLELSDTQVG-----SSGLRHLSGLTNLESINLSFTGISDGSLRKLA------ 345
            G+ NL  L+LS +        +  +  +S    L+S+ + ++ ++D S+ K++      
Sbjct: 168 FGMKNLISLDLSYSAFSLENDETFQMNVISQSKTLKSLRVRYSDLNDRSVEKISEIKQLT 227

Query: 346 -------------------GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
                               + +L +LN+    I D G   ++ ++ LT L++  ++I +
Sbjct: 228 KLDVSNCPNLSVVGVKFISQMENLNNLNISCNYIGDEGAKIISEMSQLTDLNISYSKIGN 287

Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
           +GA Y+     L +L I    +   G K +  LS LT LN++ N   T+  L +I
Sbjct: 288 TGAMYISQLGKLTTLNISTNNIGAEGAKSLSHLSQLTDLNINANNIETEGFLNII 342



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 143/327 (43%), Gaps = 61/327 (18%)

Query: 48  WMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF--NFCIQISDGGLEHL-RG 104
           W +VI ++    LSVDL   D     ++      N+  L    N   +I   G + + + 
Sbjct: 64  WHEVIKNRAK--LSVDLEVEDKIVENIVKSGIIGNIVELKLVGNSVCRIRTKGAQLISQN 121

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT-RI-HGGLVNLKGLMKLESLNI 162
           L+ LT+L    N +I  +G K  + + NL  L++  C+ RI + G  ++ G+  L SL++
Sbjct: 122 LTQLTNLDLSYN-SIGDEGAKHISTMANLTSLNI--CSNRIGYSGSFSVFGMKNLISLDL 178

Query: 163 KWCNCITDSD----MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
            +     ++D    M  +S    LKSL++  S + D  +  +  +++LT L++  CP   
Sbjct: 179 SYSAFSLENDETFQMNVISQSKTLKSLRVRYSDLNDRSVEKISEIKQLTKLDVSNCP--- 235

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
               +LS +G  F                                        +  + NL
Sbjct: 236 ----NLSVVGVKF----------------------------------------ISQMENL 251

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            +LN+    IGDEG   ++ +  L  L +S +++G++G  ++S L  L ++N+S   I  
Sbjct: 252 NNLNISCNYIGDEGAKIISEMSQLTDLNISYSKIGNTGAMYISQLGKLTTLNISTNNIGA 311

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGL 365
              + L+ LS L  LN++A  I   G 
Sbjct: 312 EGAKSLSHLSQLTDLNINANNIETEGF 338



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 9/235 (3%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHL 102
           +  K   +I+   + L ++DLS + + D G  H+   +NL SL  N C  +I   G   +
Sbjct: 110 IRTKGAQLISQNLTQLTNLDLSYNSIGDEGAKHISTMANLTSL--NICSNRIGYSGSFSV 167

Query: 103 RGLSNLTSL-----SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
            G+ NL SL     +F   N  T Q M   +    L  L +         +  +  + +L
Sbjct: 168 FGMKNLISLDLSYSAFSLENDETFQ-MNVISQSKTLKSLRVRYSDLNDRSVEKISEIKQL 226

Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
             L++  C  ++   +K +S + NL +L ISC+ + D G   +  + +LT LN+    + 
Sbjct: 227 TKLDVSNCPNLSVVGVKFISQMENLNNLNISCNYIGDEGAKIISEMSQLTDLNISYSKIG 286

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
                 +S LG L  LN++   +  +G +  S +  L  LN+  N I  E  +++
Sbjct: 287 NTGAMYISQLGKLTTLNISTNNIGAEGAKSLSHLSQLTDLNINANNIETEGFLNI 341


>gi|887026|gb|AAA69527.1| internalin, partial [Listeria monocytogenes]
          Length = 346

 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 165/329 (50%), Gaps = 39/329 (11%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 26  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 79

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L   + N +TD  + PL
Sbjct: 80  NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LXPL 131

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 132 ANLTTLERLDISXNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 184

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 185 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLXGLTKLTELKLGANQISN--I 238

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD  +  ++ L+ L+ L
Sbjct: 239 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 294

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
                +++D     ++SL  LT+++   A
Sbjct: 295 FFYNNKVSD-----VSSLANLTNINWLSA 318



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 115/255 (45%), Gaps = 59/255 (23%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N   N++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 20  DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 72

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + LS   ISD  +  L+GL+SL+ L+    Q+TD
Sbjct: 73  TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 127

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 128 --LXPLANLTTLERLDISXNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 185

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD--------KTLELISGLTGLVSLNVSN 454
           + G  L D G      L+SLT        NLTD          L  + GLT L  L +  
Sbjct: 186 LNGNQLKDIGT-----LASLT--------NLTDLDLANNQISNLAPLXGLTKLTELKLGA 232

Query: 455 SRITS----AGLRHL 465
           ++I++    AGL  L
Sbjct: 233 NQISNISPLAGLTAL 247


>gi|374293090|ref|YP_005040125.1| hypothetical protein AZOLI_2723 [Azospirillum lipoferum 4B]
 gi|357425029|emb|CBS87910.1| Conserved protein of unknown function; Leucine-rich repeat domain
           [Azospirillum lipoferum 4B]
          Length = 1026

 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 108/331 (32%), Positives = 159/331 (48%), Gaps = 35/331 (10%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           SL  ++ SG+ V+D  L  L     LQ LD   C   S   L  L GLS+L  LS    +
Sbjct: 19  SLQQLNCSGTSVSD--LSPLNGLRGLQQLD---CSLTSVSDLSPLSGLSDLQQLSC---S 70

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           + +   +   +GL  L +LD   C+      L  L GL  L+ L+   C+  + SD+ PL
Sbjct: 71  STSVSDLSPLSGLSGLQQLD---CSSTSVSDLFPLSGLSGLQQLS---CSSTSVSDLFPL 124

Query: 177 SGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAAC-LDSLSALGSLFYLN 234
           SGL+ L+ L  S + V+D S ++ L GLQ+L       C +T+   L  LS L  L  L+
Sbjct: 125 SGLSGLQELSCSGTSVSDLSPLSGLNGLQQLD------CSLTSVSDLSPLSGLSGLQELS 178

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
            +   +SD      S +  L+ L+     ++D  L  L GL+ L+ L      + D  L 
Sbjct: 179 CSGTSVSD--LSPLSGLSGLQELSCSGTSVSD--LSPLSGLSGLQQLYCSGTSVSD--LS 232

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
            L+GL  L+ L  S T V    L  LSGL+ L+ +  S T +SD  L  L+GLS L+ L+
Sbjct: 233 PLSGLSGLQQLSCSGTSVND--LSPLSGLSGLQQLYCSVTSVSD--LSPLSGLSGLQELS 288

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARIT 385
                ++D  L  L+ L+ L  L L+   I 
Sbjct: 289 CSDTSVSD--LFPLSGLSSLQELYLYNVEIP 317



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 103/321 (32%), Positives = 156/321 (48%), Gaps = 35/321 (10%)

Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
           L  L GL  L+ L+   C+  + SD+ PLSGL++L+  Q+SCS  + S ++ L GL  L 
Sbjct: 33  LSPLNGLRGLQQLD---CSLTSVSDLSPLSGLSDLQ--QLSCSSTSVSDLSPLSGLSGLQ 87

Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
            L+     V+   L  LS L  L  L+ +   +SD      S +  L+ L+     ++D 
Sbjct: 88  QLDCSSTSVSD--LFPLSGLSGLQQLSCSSTSVSD--LFPLSGLSGLQELSCSGTSVSD- 142

Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
            L  L GL  L+ L+     + D  L  L+GL  L+ L  S T V  S L  LSGL+ L+
Sbjct: 143 -LSPLSGLNGLQQLDCSLTSVSD--LSPLSGLSGLQELSCSGTSV--SDLSPLSGLSGLQ 197

Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
            ++ S T +SD  L  L+GLS L+ L      ++D  L+ L+ L+GL  L   G  + D 
Sbjct: 198 ELSCSGTSVSD--LSPLSGLSGLQQLYCSGTSVSD--LSPLSGLSGLQQLSCSGTSVND- 252

Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
             + L     L+ L  C        V  + DLS L+ L+  Q  + +D ++  +  L+GL
Sbjct: 253 -LSPLSGLSGLQQL-YCS-------VTSVSDLSPLSGLSGLQELSCSDTSVSDLFPLSGL 303

Query: 448 VSL------NVSNSRITSAGL 462
            SL      NV    I +AG+
Sbjct: 304 SSLQELYLYNVEIPGIPTAGV 324



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 138/308 (44%), Gaps = 49/308 (15%)

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
           LS S  + S L  L   S LQ LD   C   S   L  L GLS L  LS    ++ +   
Sbjct: 67  LSCSSTSVSDLSPLSGLSGLQQLD---CSSTSVSDLFPLSGLSGLQQLSC---SSTSVSD 120

Query: 124 MKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
           +   +GL  L +L    C+      L  L GL  L+ L+   C+  + SD+ PLSGL+ L
Sbjct: 121 LFPLSGLSGLQELS---CSGTSVSDLSPLSGLNGLQQLD---CSLTSVSDLSPLSGLSGL 174

Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           +  ++SCS  + S ++ L GL  L  L+  G  V+   L  LS L  L  L  +   +SD
Sbjct: 175 Q--ELSCSGTSVSDLSPLSGLSGLQELSCSGTSVSD--LSPLSGLSGLQQLYCSGTSVSD 230

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
                                     L  L GL+ L+ L+     + D  L  L+GL  L
Sbjct: 231 --------------------------LSPLSGLSGLQQLSCSGTSVND--LSPLSGLSGL 262

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
           + L  S T V  S L  LSGL+ L+ ++ S T +SD  L  L+GLSSL+ L L   +I  
Sbjct: 263 QQLYCSVTSV--SDLSPLSGLSGLQELSCSDTSVSD--LFPLSGLSSLQELYLYNVEIPG 318

Query: 363 TGLAALTS 370
              A + S
Sbjct: 319 IPTAGVLS 326



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 81/182 (44%), Gaps = 26/182 (14%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           S L  +  SG+ V+D  L  L   S LQ L    C   S   L  L GLS L  L     
Sbjct: 172 SGLQELSCSGTSVSD--LSPLSGLSGLQELS---CSGTSVSDLSPLSGLSGLQQLYC--- 223

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESLNIKWCNCITDSDMKP 175
           +  +   +   +GL  L +L    C+   G  VN L  L  L  L   +C+  + SD+ P
Sbjct: 224 SGTSVSDLSPLSGLSGLQQLS---CS---GTSVNDLSPLSGLSGLQQLYCSVTSVSDLSP 277

Query: 176 LSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLE--GCPVTAA--------CLDSL 224
           LSGL+ L+ L  S + V+D   ++ L  LQ+L L N+E  G P            CLD L
Sbjct: 278 LSGLSGLQELSCSDTSVSDLFPLSGLSSLQELYLYNVEIPGIPTAGVLSQEPDDNCLDRL 337

Query: 225 SA 226
            A
Sbjct: 338 RA 339


>gi|428313363|ref|YP_007124340.1| Leucine Rich Repeat (LRR)-containing protein [Microcoleus sp. PCC
           7113]
 gi|428254975|gb|AFZ20934.1| Leucine Rich Repeat (LRR)-containing protein [Microcoleus sp. PCC
           7113]
          Length = 254

 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/158 (41%), Positives = 89/158 (56%), Gaps = 15/158 (9%)

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
           L  L+   +L  L L+  Q++D      +++ +LK L L  ++ITD  L  L GLT LE 
Sbjct: 88  LTPLAGFTNLEVLILDSNQITD--VTPLARLTNLKDLTLAGSQITD--LTPLAGLTKLEV 143

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           L L+S  I D  +  L GL NLK L+L   Q+    L  L+GL NLE+++LS   I+D  
Sbjct: 144 LYLESNQIKD--INPLAGLANLKTLQLMYNQIAD--LTPLAGLKNLEALHLSGNQITD-- 197

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
           +  L GL +LK LNLD  QITD     +T L GL +LD
Sbjct: 198 ITPLGGLKNLKVLNLDNNQITD-----ITPLAGLANLD 230



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/196 (37%), Positives = 97/196 (49%), Gaps = 39/196 (19%)

Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
           +ITD  L  L G TNLE L LDS  I D  +  L  L NLK L L+ +Q+  + L  L+G
Sbjct: 84  QITD--LTPLAGFTNLEVLILDSNQITD--VTPLARLTNLKDLTLAGSQI--TDLTPLAG 137

Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
           LT LE + L    I D  +  LAGL++LK+L L   QI D     LT L GL        
Sbjct: 138 LTKLEVLYLESNQIKD--INPLAGLANLKTLQLMYNQIAD-----LTPLAGL-------- 182

Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
                        KNL +L + G  +TD  +  +  L +L +LNL  N  +TD T   ++
Sbjct: 183 -------------KNLEALHLSGNQITD--ITPLGGLKNLKVLNLDNN-QITDIT--PLA 224

Query: 443 GLTGLVSLNVSNSRIT 458
           GL  L SL V  + IT
Sbjct: 225 GLANLDSLYVPGNPIT 240



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 96/208 (46%), Gaps = 47/208 (22%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           QI+D  L  L G +NL  L    +N IT   +   A L NL  L L         L  L 
Sbjct: 84  QITD--LTPLAGFTNLEVL-ILDSNQIT--DVTPLARLTNLKDLTLAGSQITD--LTPLA 136

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
           GL KLE L ++  N I   D+ PL+GL NLK+LQ+  +++ D  +  L GL+ L  L+L 
Sbjct: 137 GLTKLEVLYLE-SNQI--KDINPLAGLANLKTLQLMYNQIAD--LTPLAGLKNLEALHLS 191

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
           G  +T      ++ LG L                      +LKVLNL  N+ITD  +  L
Sbjct: 192 GNQIT-----DITPLGGL---------------------KNLKVLNLDNNQITD--ITPL 223

Query: 273 KGLTNLESLNLD-------SCGIGDEGL 293
            GL NL+SL +        +C I D  +
Sbjct: 224 AGLANLDSLYVPGNPITQRTCPITDRNV 251


>gi|406830657|ref|ZP_11090251.1| hypothetical protein SpalD1_03434 [Schlesneria paludicola DSM
           18645]
          Length = 254

 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 93/174 (53%)

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
            L+ L     L +L+++   +++ G  +  K+ SL  L L  ++I+D  L  L+ L NL 
Sbjct: 65  YLNLLKPFRDLTWLDVSGTTITNAGMPEIGKLTSLTALYLSKSQISDAGLSELRSLKNLT 124

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
           +L++   GI +EG+ ++  L  L+ L L  T +   GL  L  LT+L  +NL  + ++D 
Sbjct: 125 TLHIVGNGISNEGMRSIGELDELRILHLGRTTITEEGLHELKKLTHLSDLNLIHSNLNDD 184

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
           +   L+ L+SL +L+L   +I+D GLA+   L  LT L     + T +G   L+
Sbjct: 185 AANVLSELTSLTTLHLGRNEISDVGLASFNKLNNLTILTYQRNKTTLAGEEALK 238



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 3/163 (1%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           +D+SG+ +T++G+  +   ++L +L  +   QISD GL  LR L NLT+L     N I+ 
Sbjct: 78  LDVSGTTITNAGMPEIGKLTSLTALYLSKS-QISDAGLSELRSLKNLTTLHIV-GNGISN 135

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
           +GM++   L  L  L L R T    GL  LK L  L  LN+   N + D     LS LT+
Sbjct: 136 EGMRSIGELDELRILHLGRTTITEEGLHELKKLTHLSDLNLIHSN-LNDDAANVLSELTS 194

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
           L +L +  ++++D G+A    L  LT+L  +    T A  ++L
Sbjct: 195 LTTLHLGRNEISDVGLASFNKLNNLTILTYQRNKTTLAGEEAL 237



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 82/159 (51%)

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
           LK   +L  L++    I + G+  +  L +L  L LS +Q+  +GL  L  L NL ++++
Sbjct: 69  LKPFRDLTWLDVSGTTITNAGMPEIGKLTSLTALYLSKSQISDAGLSELRSLKNLTTLHI 128

Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
              GIS+  +R +  L  L+ L+L    IT+ GL  L  LT L+ L+L  + + D  A  
Sbjct: 129 VGNGISNEGMRSIGELDELRILHLGRTTITEEGLHELKKLTHLSDLNLIHSNLNDDAANV 188

Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           L    +L +L +    ++D G+     L++LT+L   +N
Sbjct: 189 LSELTSLTTLHLGRNEISDVGLASFNKLNNLTILTYQRN 227



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 88/178 (49%), Gaps = 11/178 (6%)

Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
           VN KG  K    N K+ N      +KP   LT    L +S + +T++G+  +  L  LT 
Sbjct: 53  VNFKGNKKF---NYKYLNL-----LKPFRDLT---WLDVSGTTITNAGMPEIGKLTSLTA 101

Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
           L L    ++ A L  L +L +L  L++    +S++G     ++  L++L+LG   IT+E 
Sbjct: 102 LYLSKSQISDAGLSELRSLKNLTTLHIVGNGISNEGMRSIGELDELRILHLGRTTITEEG 161

Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
           L  LK LT+L  LNL    + D+    L+ L +L  L L   ++   GL   + L NL
Sbjct: 162 LHELKKLTHLSDLNLIHSNLNDDAANVLSELTSLTTLHLGRNEISDVGLASFNKLNNL 219



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 1/147 (0%)

Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
           L    +L  +++S T I++  + ++  L+SL +L L   QI+D GL+ L SL  LT L +
Sbjct: 69  LKPFRDLTWLDVSGTTITNAGMPEIGKLTSLTALYLSKSQISDAGLSELRSLKNLTTLHI 128

Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
            G  I++ G   +     LR L +    +T+ G+  +K L+ L+ LNL    NL D    
Sbjct: 129 VGNGISNEGMRSIGELDELRILHLGRTTITEEGLHELKKLTHLSDLNLIH-SNLNDDAAN 187

Query: 440 LISGLTGLVSLNVSNSRITSAGLRHLN 466
           ++S LT L +L++  + I+  GL   N
Sbjct: 188 VLSELTSLTTLHLGRNEISDVGLASFN 214



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 1/168 (0%)

Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
           ++F+ N     + +       +L  LD+   T  + G+  +  L  L +L +     I+D
Sbjct: 53  VNFKGNKKFNYKYLNLLKPFRDLTWLDVSGTTITNAGMPEIGKLTSLTALYLSKSQ-ISD 111

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           + +  L  L NL +L I  + +++ G+  +  L +L +L+L    +T   L  L  L  L
Sbjct: 112 AGLSELRSLKNLTTLHIVGNGISNEGMRSIGELDELRILHLGRTTITEEGLHELKKLTHL 171

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
             LNL    L+DD     S++ SL  L+LG NEI+D  L     L NL
Sbjct: 172 SDLNLIHSNLNDDAANVLSELTSLTTLHLGRNEISDVGLASFNKLNNL 219



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 73/147 (49%), Gaps = 1/147 (0%)

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT  GM     L +L  L L +      GL  L+ L  L +L+I   N I++  M+ +  
Sbjct: 85  ITNAGMPEIGKLTSLTALYLSKSQISDAGLSELRSLKNLTTLHI-VGNGISNEGMRSIGE 143

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           L  L+ L +  + +T+ G+  LK L  L+ LNL    +     + LS L SL  L+L R 
Sbjct: 144 LDELRILHLGRTTITEEGLHELKKLTHLSDLNLIHSNLNDDAANVLSELTSLTTLHLGRN 203

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
           ++SD G   F+K+ +L +L    N+ T
Sbjct: 204 EISDVGLASFNKLNNLTILTYQRNKTT 230


>gi|320167357|gb|EFW44256.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 766

 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 128/280 (45%), Gaps = 7/280 (2%)

Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           K + +  +++T        GL  L  L L   P+T+   ++ S L  L YL+L+  QL+D
Sbjct: 86  KEVDLQSNQITAISPDAFAGLTSLNSLYLSDNPITSISANAFSDLTELSYLHLSYTQLTD 145

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
                F+ + +L  LNL F +IT         L  L++L+L++  I        TGL  L
Sbjct: 146 ISANAFTTLPALVSLNLEFTQITTISAAAFTSLAKLKNLSLNNNQITSVPESAFTGLTAL 205

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDARQ 359
             LEL + Q+ S      + LT L  + L+    TGIS+ +     GL++L +L L   Q
Sbjct: 206 VSLELDNNQITSISALAFANLTALSYLGLANNRITGISENTFT---GLTALAALYLLDNQ 262

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
           IT     A T LT LT L L   +IT   A        L  L +    +T         L
Sbjct: 263 ITSISANAFTDLTALTTLSLALNQITSISANAFTGLTTLAGLSLALNQITSISTNAFTGL 322

Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
           ++L  L+L+ N  +T  +    +GLT L  L + N++I S
Sbjct: 323 TTLAGLDLALN-QITGISTNAFTGLTTLAVLRLDNNQIAS 361



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 113/271 (41%), Gaps = 25/271 (9%)

Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
           ++N ITA    AFAGL +L  L L                           N IT     
Sbjct: 91  QSNQITAISPDAFAGLTSLNSLYLSD-------------------------NPITSISAN 125

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
             S LT L  L +S +++TD        L  L  LNLE   +T     + ++L  L  L+
Sbjct: 126 AFSDLTELSYLHLSYTQLTDISANAFTTLPALVSLNLEFTQITTISAAAFTSLAKLKNLS 185

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           LN  Q++      F+ + +L  L L  N+IT    +    LT L  L L +  I      
Sbjct: 186 LNNNQITSVPESAFTGLTALVSLELDNNQITSISALAFANLTALSYLGLANNRITGISEN 245

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
             TGL  L  L L D Q+ S      + LT L +++L+   I+  S     GL++L  L+
Sbjct: 246 TFTGLTALAALYLLDNQITSISANAFTDLTALTTLSLALNQITSISANAFTGLTTLAGLS 305

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           L   QIT     A T LT L  LDL   +IT
Sbjct: 306 LALNQITSISTNAFTGLTTLAGLDLALNQIT 336


>gi|219821270|gb|ACL37758.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 116/376 (30%), Positives = 171/376 (45%), Gaps = 58/376 (15%)

Query: 74  LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
           +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN IT   +     L NL
Sbjct: 55  ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNL 108

Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
            +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ LT L+ L IS +KV+
Sbjct: 109 NRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLERLDISSNKVS 162

Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSK 250
           D  +     L KLT  NLE    T   +  ++ LG   +L  L+LN  QL D G    + 
Sbjct: 163 DISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LAS 213

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
           + +L  L++  N+I++  L  L GLT L  L L    I +  +  + GL  L  LEL + 
Sbjct: 214 LTNLTSLDVANNQISN--LAPLSGLTKLTELELGYNQISN--ISPIEGLTALTSLELHEN 269

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK----------------LAGLSSL 350
           Q+    +  +S L NL  + L F  ISD     SL K                LA L+++
Sbjct: 270 QL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI 327

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEIC 404
             L+    QI+D  L  L +LT ++ L L     T+    Y  N       KN+    I 
Sbjct: 328 NWLSAAHNQISD--LTPLANLTRISELGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIA 385

Query: 405 GGGLTDAGVKHIKDLS 420
              ++D G     D++
Sbjct: 386 PATISDGGSYAEPDIT 401



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 115/236 (48%), Gaps = 39/236 (16%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD----EGLVNLTG 298
           DG E    + +L  +N GFN++TD  +  LK LT L  + +++  I D      L NLTG
Sbjct: 34  DGLEY---LNNLTQINFGFNQLTD--ITPLKDLTKLVDIVMNNNQITDISPLANLTNLTG 88

Query: 299 LC----------------NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
           L                 NL  LELS   +  S +  LSGLTNL+   LSF G     L+
Sbjct: 89  LTLFNNQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVTDLK 143

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
            LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL  L 
Sbjct: 144 PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELS 199

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
           + G  L D G   +  L++LT L+++ N       L  +SGLT L  L +  ++I+
Sbjct: 200 LNGNQLKDIGT--LASLTNLTSLDVANNQ---ISNLAPLSGLTKLTELELGYNQIS 250


>gi|297808737|ref|XP_002872252.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297318089|gb|EFH48511.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 642

 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 113/363 (31%), Positives = 190/363 (52%), Gaps = 33/363 (9%)

Query: 80  CSNLQSLDFNFCIQISDGGLEHL----RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
           CSNL  +   +C++ISD G++ L    +GL +L  +S+ +   IT   +++ A L+ L  
Sbjct: 171 CSNLNKISLKWCMEISDLGIDLLCKMCKGLKSL-DVSYLK---ITNDSIRSIALLLKLEV 226

Query: 136 LDLERCTRI-HGGLVNLK-GLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS--CS 190
           LD+  C  I   GL  L+ G   L+ +++  C  ++ S +  +  G  +++ L+ S   S
Sbjct: 227 LDMVSCPLIDDAGLQFLENGSPSLQEVDVTRCERVSLSGLISIVRGHPDIQLLKASHCVS 286

Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRC-QLSDDGCEKF 248
           +V+ S + Y+K L+ L  + ++G  V+ + L +L S+  SL  + L+RC  ++D G   F
Sbjct: 287 EVSGSFLQYIKALKHLKTIWIDGAHVSDSSLVTLSSSCRSLVEIGLSRCVDVTDIGMMGF 346

Query: 249 SK-IGSLKVLNL---GFNEITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCN- 301
           ++   +LK LNL   GF  +TD  +  + +   NLE+L L+SC  I ++GL +L      
Sbjct: 347 ARNCLNLKTLNLACCGF--VTDVAISAVAQSCRNLETLKLESCHLITEKGLQSLGCYSKL 404

Query: 302 LKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQ 359
           L+ L+L+D   V   GL ++S  +NL+ + L   T ISD  +  +    S K L LD  +
Sbjct: 405 LQELDLTDCYGVNDRGLEYISKCSNLQRLKLGLCTNISDKGIFHIGSKCS-KLLELDLYR 463

Query: 360 IT---DTGLAALTS-LTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGV 413
                D GLAAL+     L  L L +   +TD+G   +R  + L  LE+ G   +T  G+
Sbjct: 464 CAGFGDDGLAALSRGCKSLNRLILSYCCELTDTGVEQIRQLELLSHLELRGLKNITGVGL 523

Query: 414 KHI 416
             I
Sbjct: 524 AAI 526



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 115/473 (24%), Positives = 204/473 (43%), Gaps = 105/473 (22%)

Query: 81  SNLQSLDFNFCIQISDG-----GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LV 134
            NL SLD + C ++ D       L+       + SL+  R+ A+ A+G++  A + + L 
Sbjct: 65  PNLSSLDLSVCPKLDDDVVLRLALDGTVSTLGIKSLNLSRSTAVRARGLETLARMCHALE 124

Query: 135 KLDLERCT----RIHGGLVNLKGLMKLE-----------------------SLNIKWCNC 167
           ++D+  C     R    L +  GL +L+                        +++KWC  
Sbjct: 125 RVDVSHCWGFGDREAAALSSAVGLRELKMDKCLSLSDVGLARIVVGCSNLNKISLKWCME 184

Query: 168 ITDSDMKPLSGLTN-LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLS 225
           I+D  +  L  +   LKSL +S  K+T+  I  +  L KL +L++  CP +  A L  L 
Sbjct: 185 ISDLGIDLLCKMCKGLKSLDVSYLKITNDSIRSIALLLKLEVLDMVSCPLIDDAGLQFLE 244

Query: 226 -ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL-----------NLGFNEITDECLVHLK 273
               SL  +++ R       CE+ S  G + ++           +   +E++   L ++K
Sbjct: 245 NGSPSLQEVDVTR-------CERVSLSGLISIVRGHPDIQLLKASHCVSEVSGSFLQYIK 297

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCN-------LKCLELSDTQVGSSGLRHLSGLTNL 326
            L +L+++ +D   + D  LV L+  C         +C++++D  +G  G        NL
Sbjct: 298 ALKHLKTIWIDGAHVSDSSLVTLSSSCRSLVEIGLSRCVDVTD--IGMMGFAR--NCLNL 353

Query: 327 ESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLTGLTH----LDL 379
           +++NL+  G ++D ++  +A    +L++L L++   IT+ GL +L   + L       D 
Sbjct: 354 KTLNLACCGFVTDVAISAVAQSCRNLETLKLESCHLITEKGLQSLGCYSKLLQELDLTDC 413

Query: 380 FGARITDSGAAYLRNFKNLRSLE--ICGGGLTDAGVKHI--------------------- 416
           +G  + D G  Y+    NL+ L+  +C   ++D G+ HI                     
Sbjct: 414 YG--VNDRGLEYISKCSNLQRLKLGLC-TNISDKGIFHIGSKCSKLLELDLYRCAGFGDD 470

Query: 417 ------KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGL 462
                 +   SL  L LS  C LTD  +E I  L  L  L +   + IT  GL
Sbjct: 471 GLAALSRGCKSLNRLILSYCCELTDTGVEQIRQLELLSHLELRGLKNITGVGL 523



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 116/419 (27%), Positives = 180/419 (42%), Gaps = 78/419 (18%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
           ++D  +D++      L S+D+S   +T+  +  +     L+ LD   C  I D GL+ L 
Sbjct: 185 ISDLGIDLLCKMCKGLKSLDVSYLKITNDSIRSIALLLKLEVLDMVSCPLIDDAGLQFLE 244

Query: 104 -GLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERC-TRIHGGLVN-LKGLMKLES 159
            G  +L  +   R   ++  G+ +   G  ++  L    C + + G  +  +K L  L++
Sbjct: 245 NGSPSLQEVDVTRCERVSLSGLISIVRGHPDIQLLKASHCVSEVSGSFLQYIKALKHLKT 304

Query: 160 LNIKWCNCITDSDMKPLS---------GLT------------------NLKSLQISCSK- 191
           + I   + ++DS +  LS         GL+                  NLK+L ++C   
Sbjct: 305 IWIDGAH-VSDSSLVTLSSSCRSLVEIGLSRCVDVTDIGMMGFARNCLNLKTLNLACCGF 363

Query: 192 VTDSGI-AYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFY-LNLNRCQ-LSDDGCEK 247
           VTD  I A  +  + L  L LE C  +T   L SL     L   L+L  C  ++D G E 
Sbjct: 364 VTDVAISAVAQSCRNLETLKLESCHLITEKGLQSLGCYSKLLQELDLTDCYGVNDRGLEY 423

Query: 248 FSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCN--- 301
            SK  +L+ L LG    I+D+ + H+    + L  L+L  C G GD+GL  L+  C    
Sbjct: 424 ISKCSNLQRLKLGLCTNISDKGIFHIGSKCSKLLELDLYRCAGFGDDGLAALSRGCKSLN 483

Query: 302 ----LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
                 C EL+DT  G   +R L  L++LE                L GL          
Sbjct: 484 RLILSYCCELTDT--GVEQIRQLELLSHLE----------------LRGL---------- 515

Query: 358 RQITDTGLAALT-SLTGLTHLDL-FGARITDSGAAYLRNF-KNLRSLEICGGGLTDAGV 413
           + IT  GLAA+      L +LDL     I DSG   L  F KNLR + +C   ++D  +
Sbjct: 516 KNITGVGLAAIACGCKKLGYLDLKLCENIDDSGFWALAYFSKNLRQINLCNCSVSDTAL 574



 Score = 45.1 bits (105), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 71/161 (44%), Gaps = 8/161 (4%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAF 127
           V D GL ++  CSNLQ L    C  ISD G+ H+    S L  L   R       G+ A 
Sbjct: 416 VNDRGLEYISKCSNLQRLKLGLCTNISDKGIFHIGSKCSKLLELDLYRCAGFGDDGLAAL 475

Query: 128 A-GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKS 184
           + G  +L +L L  C  +   G+  ++ L  L  L ++    IT   +  ++ G   L  
Sbjct: 476 SRGCKSLNRLILSYCCELTDTGVEQIRQLELLSHLELRGLKNITGVGLAAIACGCKKLGY 535

Query: 185 LQIS-CSKVTDSGIAYLKGLQK-LTLLNLEGCPV--TAACL 221
           L +  C  + DSG   L    K L  +NL  C V  TA C+
Sbjct: 536 LDLKLCENIDDSGFWALAYFSKNLRQINLCNCSVSDTALCM 576


>gi|290991576|ref|XP_002678411.1| predicted protein [Naegleria gruberi]
 gi|284092023|gb|EFC45667.1| predicted protein [Naegleria gruberi]
          Length = 153

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 77/151 (50%)

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
           +  L  LN+G+NEIT E    +  +  L SL + +  I D+G   L+ +  L  L +S+ 
Sbjct: 1   MKQLTSLNIGYNEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNN 60

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
           +    G +H+S +  L S+ +    I D   + ++ +  L SLN+   +I+D G   ++ 
Sbjct: 61  ETSDEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYNEISDEGAKYISE 120

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
           +  LT L ++   I+D GA YL   K L SL
Sbjct: 121 MKQLTLLYIYNNEISDKGAKYLSEMKQLTSL 151



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 1/152 (0%)

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
           +  L  L +   ++   G + +S +  L S+ +    ISD   + L+ +  L SLN+   
Sbjct: 1   MKQLTSLNIGYNEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNN 60

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
           + +D G   ++ +  LT L ++  +I D GA Y+   K L SL I    ++D G K+I +
Sbjct: 61  ETSDEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYNEISDEGAKYISE 120

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
           +  LTLL +  N  ++DK  + +S +  L SL
Sbjct: 121 MKQLTLLYIYNN-EISDKGAKYLSEMKQLTSL 151



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 75/151 (49%)

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           +  L SLN+    I  EG   ++ +  L  L + + ++   G ++LS +  L S+N+S  
Sbjct: 1   MKQLTSLNIGYNEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNN 60

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
             SD   + ++ +  L SL +   QI D G   ++ +  LT L++    I+D GA Y+  
Sbjct: 61  ETSDEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYNEISDEGAKYISE 120

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
            K L  L I    ++D G K++ ++  LT L
Sbjct: 121 MKQLTLLYIYNNEISDKGAKYLSEMKQLTSL 151



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 76/147 (51%), Gaps = 1/147 (0%)

Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
           +  L S+N+ +  I+    + ++ +  L SL +   +I+D G   L+ +  LT L++   
Sbjct: 1   MKQLTSLNIGYNEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNN 60

Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
             +D GA ++   K L SL I    + D G K+I ++  LT LN+  N  ++D+  + IS
Sbjct: 61  ETSDEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYN-EISDEGAKYIS 119

Query: 443 GLTGLVSLNVSNSRITSAGLRHLNHAR 469
            +  L  L + N+ I+  G ++L+  +
Sbjct: 120 EMKQLTLLYIYNNEISDKGAKYLSEMK 146



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 1/152 (0%)

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
           + +L SLNI + N IT    K +S +  L SL I  ++++D G  YL  +++LT LN+  
Sbjct: 1   MKQLTSLNIGY-NEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSN 59

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
              +      +S +  L  L +   Q+ D G +  S++  L  LN+G+NEI+DE   ++ 
Sbjct: 60  NETSDEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYNEISDEGAKYIS 119

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
            +  L  L + +  I D+G   L+ +  L  L
Sbjct: 120 EMKQLTLLYIYNNEISDKGAKYLSEMKQLTSL 151



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 24/175 (13%)

Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
           +++LT LN+    +T      +S +  L  L +   ++SD G +  S++  L  LN+  N
Sbjct: 1   MKQLTSLNIGYNEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNN 60

Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
           E +DE   H+  +  L SL                         + D Q+G  G +++S 
Sbjct: 61  ETSDEGAKHISEMKQLTSLY------------------------IYDNQIGDKGAKYISE 96

Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
           +  L S+N+ +  ISD   + ++ +  L  L +   +I+D G   L+ +  LT L
Sbjct: 97  MKQLTSLNIGYNEISDEGAKYISEMKQLTLLYIYNNEISDKGAKYLSEMKQLTSL 151



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 76/151 (50%)

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           +  L SL I  +++T  G  ++  +++LT L +    ++      LS +  L  LN++  
Sbjct: 1   MKQLTSLNIGYNEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNN 60

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
           + SD+G +  S++  L  L +  N+I D+   ++  +  L SLN+    I DEG   ++ 
Sbjct: 61  ETSDEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYNEISDEGAKYISE 120

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
           +  L  L + + ++   G ++LS +  L S+
Sbjct: 121 MKQLTLLYIYNNEISDKGAKYLSEMKQLTSL 151



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 9/154 (5%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI---QISDGGLEHLRGLSNLTSLSFRR 115
           L S+++  +++T  G   + +   L SL    CI   +ISD G ++L  +  LTSL+   
Sbjct: 4   LTSLNIGYNEITVEGAKFISEMKQLTSL----CIYNNEISDKGAKYLSEMKQLTSLNV-S 58

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
           NN  + +G K  + +  L  L +        G   +  + +L SLNI + N I+D   K 
Sbjct: 59  NNETSDEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGY-NEISDEGAKY 117

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
           +S +  L  L I  ++++D G  YL  +++LT L
Sbjct: 118 ISEMKQLTLLYIYNNEISDKGAKYLSEMKQLTSL 151


>gi|219821285|gb|ACL37768.1| internalin A [Listeria monocytogenes]
 gi|219821315|gb|ACL37788.1| internalin A [Listeria monocytogenes]
 gi|219821321|gb|ACL37792.1| internalin A [Listeria monocytogenes]
 gi|219821327|gb|ACL37796.1| internalin A [Listeria monocytogenes]
 gi|219821345|gb|ACL37808.1| internalin A [Listeria monocytogenes]
          Length = 742

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 116/376 (30%), Positives = 171/376 (45%), Gaps = 58/376 (15%)

Query: 74  LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
           +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN IT   +     L NL
Sbjct: 55  ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNL 108

Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
            +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ LT L+ L IS +KV+
Sbjct: 109 NRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLERLDISSNKVS 162

Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSK 250
           D  +     L KLT  NLE    T   +  ++ LG   +L  L+LN  QL D G    + 
Sbjct: 163 DISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LAS 213

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
           + +L  L++  N+I++  L  L GLT L  L L    I +  +  + GL  L  LEL + 
Sbjct: 214 LTNLTSLDVANNQISN--LAPLSGLTKLTELELGYNQISN--ISPIEGLTALTSLELHEN 269

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK----------------LAGLSSL 350
           Q+    +  +S L NL  + L F  ISD     SL K                LA L+++
Sbjct: 270 QL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI 327

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEIC 404
             L+    QI+D  L  L +LT ++ L L     T+    Y  N       KN+    I 
Sbjct: 328 NWLSAAHNQISD--LTPLANLTRISELGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIA 385

Query: 405 GGGLTDAGVKHIKDLS 420
              ++D G     D++
Sbjct: 386 PATISDGGSYAEPDIT 401



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 115/236 (48%), Gaps = 39/236 (16%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD----EGLVNLTG 298
           DG E    + +L  +N GFN++TD  +  LK LT L  + +++  I D      L NLTG
Sbjct: 34  DGLEY---LNNLTQINFGFNQLTD--ITPLKDLTKLVDIVMNNNQITDISPLANLTNLTG 88

Query: 299 LC----------------NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
           L                 NL  LELS   +  S +  LSGLTNL+   LSF G     L+
Sbjct: 89  LTLFNNQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVTDLK 143

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
            LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL  L 
Sbjct: 144 PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELS 199

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
           + G  L D G   +  L++LT L+++ N       L  +SGLT L  L +  ++I+
Sbjct: 200 LNGNQLKDIGT--LASLTNLTSLDVANNQ---ISNLAPLSGLTKLTELELGYNQIS 250


>gi|343423407|emb|CCD18182.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
          Length = 518

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 108/378 (28%), Positives = 160/378 (42%), Gaps = 62/378 (16%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISD----------------GGLEHLRGLSNLTSLS 112
           VTD  L  L    +L  L+   C +++D                G    +RGL  L SL 
Sbjct: 144 VTDDFLCSLTTSGSLTHLNLTECSRLTDVEPLASIKTLEQVNLSGSFPGVRGLGALGSLP 203

Query: 113 FRR-----NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI---KW 164
             R     + A+T   +K  +    LV+L L  C R    L ++  L+K+ SL +     
Sbjct: 204 RLRELNLKHTAVTDDCLKTLSASKTLVRLFLGDCRR----LTDVTPLVKISSLQVVDLSD 259

Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
           C+ IT   M     L  L  L ++ + +TD  +  L   Q L  L+++ C +    L  +
Sbjct: 260 CSGITKG-MGGFGTLPGLYLLSLTGTALTDEQLQELCASQSLESLSIKRCKL----LTDV 314

Query: 225 SALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL--------- 272
             LG   +L  L+++ C     G   FS +  L+ L + F  +T+ECL  +         
Sbjct: 315 GVLGFVTTLRELDMSECDGVARGFCSFSALRELRSLYMTFTRVTNECLCEIAKCTQLVKL 374

Query: 273 -----KGLTN---------LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
                K LT+         LE LN++ C   D+GL  L GL  L+ L +S T VG+  LR
Sbjct: 375 SVAGCKKLTDISCLAQVHTLEDLNVNMCEHIDDGLGVLGGLEELRTLRMSSTAVGNDELR 434

Query: 319 HLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
            +     LE   L     I+D S   LA   SL  LNLD  Q   TG+  L  L  L  +
Sbjct: 435 LVCKSKTLERSELEGCERITDVS--ALAAAQSLMFLNLDKCQKVVTGVGELGKLPALRVI 492

Query: 378 DLFGARITDSGAAYLRNF 395
            L GA +T+     L+ +
Sbjct: 493 SLQGATVTEDDMKSLKMY 510



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 149/326 (45%), Gaps = 35/326 (10%)

Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
           G+S+L  ++    +AI   G   F  +  L  L L R       L +L     L  LN+ 
Sbjct: 107 GMSSLEEVALHNASAIVHIG--RFGRMPCLRVLTLHRVGVTDDFLCSLTTSGSLTHLNLT 164

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
            C+ +TD  ++PL+ +  L+ + +S S     G+  L  L +L  LNL+   VT  CL +
Sbjct: 165 ECSRLTD--VEPLASIKTLEQVNLSGSFPGVRGLGALGSLPRLRELNLKHTAVTDDCLKT 222

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-----------GF----------- 261
           LSA  +L  L L  C+   D      KI SL+V++L           GF           
Sbjct: 223 LSASKTLVRLFLGDCRRLTD-VTPLVKISSLQVVDLSDCSGITKGMGGFGTLPGLYLLSL 281

Query: 262 --NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
               +TDE L  L    +LESL++  C  + D G++    +  L+ L++S+    + G  
Sbjct: 282 TGTALTDEQLQELCASQSLESLSIKRCKLLTDVGVLGF--VTTLRELDMSECDGVARGFC 339

Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHL 377
             S L  L S+ ++FT +++  L ++A  + L  L++   +++TD  ++ L  +  L  L
Sbjct: 340 SFSALRELRSLYMTFTRVTNECLCEIAKCTQLVKLSVAGCKKLTD--ISCLAQVHTLEDL 397

Query: 378 DLFGARITDSGAAYLRNFKNLRSLEI 403
           ++      D G   L   + LR+L +
Sbjct: 398 NVNMCEHIDDGLGVLGGLEELRTLRM 423



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 115/231 (49%), Gaps = 12/231 (5%)

Query: 45  NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDG--GLEHL 102
           +++  ++ ASQ    LS+      +TD G++     + L+ LD + C  ++ G      L
Sbjct: 288 DEQLQELCASQSLESLSIK-RCKLLTDVGVLGF--VTTLRELDMSECDGVARGFCSFSAL 344

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
           R L +L  ++F R   +T + +   A    LVKL +  C ++   +  L  +  LE LN+
Sbjct: 345 RELRSL-YMTFTR---VTNECLCEIAKCTQLVKLSVAGCKKL-TDISCLAQVHTLEDLNV 399

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
             C  I D  +  L GL  L++L++S + V +  +  +   + L    LEGC      + 
Sbjct: 400 NMCEHIDDG-LGVLGGLEELRTLRMSSTAVGNDELRLVCKSKTLERSELEGCERITD-VS 457

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
           +L+A  SL +LNL++CQ    G  +  K+ +L+V++L    +T++ +  LK
Sbjct: 458 ALAAAQSLMFLNLDKCQKVVTGVGELGKLPALRVISLQGATVTEDDMKSLK 508


>gi|219821324|gb|ACL37794.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 116/376 (30%), Positives = 171/376 (45%), Gaps = 58/376 (15%)

Query: 74  LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
           +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN IT   +     L NL
Sbjct: 55  ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNL 108

Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
            +L+L   T     +  L GL  L+ L+    N +TD  +KPL+ LT L+ L IS +KV+
Sbjct: 109 NRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLERLDISSNKVS 162

Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSK 250
           D  +     L KLT  NLE    T   +  ++ LG   +L  L+LN  QL D G    + 
Sbjct: 163 DISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LAS 213

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
           + +L  L++  N+I++  L  L GLT L  L L    I +  +  + GL  L  LEL + 
Sbjct: 214 LTNLTSLDVANNQISN--LAPLSGLTKLTELELGYNQISN--ISPIAGLTALTSLELHEN 269

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK----------------LAGLSSL 350
           Q+    +  +S L NL  + L F  ISD     SL K                LA L+++
Sbjct: 270 QL--EDISPISNLKNLTYLALYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI 327

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEIC 404
             L+    QI+D  L  L +LT ++ L L     T+    Y  N       KN+    I 
Sbjct: 328 NWLSAAHNQISD--LTPLANLTRISELGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIA 385

Query: 405 GGGLTDAGVKHIKDLS 420
              ++D G     D++
Sbjct: 386 PATISDGGSYAEPDIT 401



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 120/247 (48%), Gaps = 43/247 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD----EGLVNLTG 298
           DG E    + +L  +N GFN++TD  +  LK LT L  + +++  I D      L NLTG
Sbjct: 34  DGLEY---LNNLTQINFGFNQLTD--ITPLKDLTKLVDIVMNNNQITDISPLANLTNLTG 88

Query: 299 LC----------------NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
           L                 NL  LELS   +  S +  LSGLTNL+   LSF G     L+
Sbjct: 89  LTLFNNQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVTDLK 143

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
            LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL  L 
Sbjct: 144 PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELS 199

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+++ N       L  +SGLT L  L +  ++I++   
Sbjct: 200 LNGNQLKDIGT--LASLTNLTSLDVANNQ---ISNLAPLSGLTKLTELELGYNQISNISP 254

Query: 460 -AGLRHL 465
            AGL  L
Sbjct: 255 IAGLTAL 261


>gi|290991093|ref|XP_002678170.1| predicted protein [Naegleria gruberi]
 gi|284091781|gb|EFC45426.1| predicted protein [Naegleria gruberi]
          Length = 156

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 88/153 (57%)

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
           LK L++ ++ +G  G + +S +T+LE+++LS   + D     L  +  L  L++   ++T
Sbjct: 4   LKTLKIYNSFLGEDGAKVISTMTSLENLHLSGASVGDKGAVLLGSMHQLVKLSIPCNRVT 63

Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
             G  +++SL  L  L++    I D+GA ++ N KNL  L   G G+++ GV+ I  + S
Sbjct: 64  SIGAESISSLQNLITLNISQNIIADTGAKFISNLKNLNELIADGIGISNDGVEFITSMES 123

Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
           LT L+L +N +  + T  LIS +  L SL++SN
Sbjct: 124 LTALSLQKNDDFEENTPLLISTMKQLTSLDLSN 156



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 58/105 (55%)

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           +T+LE+L+L    +GD+G V L  +  L  L +   +V S G   +S L NL ++N+S  
Sbjct: 25  MTSLENLHLSGASVGDKGAVLLGSMHQLVKLSIPCNRVTSIGAESISSLQNLITLNISQN 84

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
            I+D   + ++ L +L  L  D   I++ G+  +TS+  LT L L
Sbjct: 85  IIADTGAKFISNLKNLNELIADGIGISNDGVEFITSMESLTALSL 129



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 25/154 (16%)

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
           + +L++L I + + + +   K +S +T+L++L +S + V D G   L  + +L  L++  
Sbjct: 1   MKRLKTLKI-YNSFLGEDGAKVISTMTSLENLHLSGASVGDKGAVLLGSMHQLVKLSIPC 59

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
             VT+   +S+S+L +L  LN+++  ++D G  KF                       + 
Sbjct: 60  NRVTSIGAESISSLQNLITLNISQNIIADTGA-KF-----------------------IS 95

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
            L NL  L  D  GI ++G+  +T + +L  L L
Sbjct: 96  NLKNLNELIADGIGISNDGVEFITSMESLTALSL 129


>gi|290980528|ref|XP_002672984.1| FBOX domain-containing protein [Naegleria gruberi]
 gi|284086564|gb|EFC40240.1| FBOX domain-containing protein [Naegleria gruberi]
          Length = 390

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 123/274 (44%), Gaps = 39/274 (14%)

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           ++D +   +S L  LK L+I    +     +Y+  +Q L  L L+        L +L+ L
Sbjct: 127 LSDDNSYYVSKLKGLKRLEIDHCVLEPKVFSYISQIQSLKELQLDKNYYNGE-LKNLTRL 185

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD---ECLVHLKGLT-------- 276
             L  L L  C+L         + GSL  LNL  N+I +   EC+ +++ LT        
Sbjct: 186 KHLKLLELVNCELELKDINLLLEFGSLSHLNLELNKIGNLHAECISNMRTLTFLGLNNTN 245

Query: 277 ----NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
               +LE L L    I  EG+  L  +  LK L L+D  +G  G   +S LTNL  +NL+
Sbjct: 246 ITILSLEVLYLGFNEIDAEGVEYLVKMKTLKTLILNDNPIGQLGAVLISKLTNLRELNLT 305

Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
            T ++D  +  ++ ++SL+ L +                 G  H+      IT  GA YL
Sbjct: 306 NTCMNDKGVEYISKMASLRDLQI-----------------GTNHM------ITKLGALYL 342

Query: 393 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
              KNL+ L +    + D GV+ + +L SL  L+
Sbjct: 343 SQMKNLQRLSVPATSINDQGVEFLVNLDSLQYLD 376



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 148/303 (48%), Gaps = 20/303 (6%)

Query: 90  FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT---RIHG 146
           FC +I  G +E      NL  L  +++  ++       + L  L +L+++ C    ++  
Sbjct: 100 FC-EIGLGVMECFPYFENLQVLKLKKS-LLSDDNSYYVSKLKGLKRLEIDHCVLEPKVFS 157

Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
            +  ++ L +L+ L+  + N     ++K L+ L +LK L++   ++    I  L     L
Sbjct: 158 YISQIQSLKELQ-LDKNYYN----GELKNLTRLKHLKLLELVNCELELKDINLLLEFGSL 212

Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
           + LNLE   +     + +S + +L +L LN   ++         I SL+VL LGFNEI  
Sbjct: 213 SHLNLELNKIGNLHAECISNMRTLTFLGLNNTNIT---------ILSLEVLYLGFNEIDA 263

Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
           E + +L  +  L++L L+   IG  G V ++ L NL+ L L++T +   G+ ++S + +L
Sbjct: 264 EGVEYLVKMKTLKTLILNDNPIGQLGAVLISKLTNLRELNLTNTCMNDKGVEYISKMASL 323

Query: 327 ESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
             + +     I+      L+ + +L+ L++ A  I D G+  L +L  L +LD  G  ++
Sbjct: 324 RDLQIGTNHMITKLGALYLSQMKNLQRLSVPATSINDQGVEFLVNLDSLQYLDARGLPLS 383

Query: 386 DSG 388
             G
Sbjct: 384 IRG 386



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 112/269 (41%), Gaps = 16/269 (5%)

Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
           E C +    ++      +L  L L +  LSDD     SK+  LK L +    +  +   +
Sbjct: 99  EFCEIGLGVMECFPYFENLQVLKLKKSLLSDDNSYYVSKLKGLKRLEIDHCVLEPKVFSY 158

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
           +  + +L+ L LD      E L NLT L +LK LEL + ++    +  L    +L  +NL
Sbjct: 159 ISQIQSLKELQLDKNYYNGE-LKNLTRLKHLKLLELVNCELELKDINLLLEFGSLSHLNL 217

Query: 332 SFTGISD------GSLRKLAGLS---------SLKSLNLDARQITDTGLAALTSLTGLTH 376
               I +       ++R L  L          SL+ L L   +I   G+  L  +  L  
Sbjct: 218 ELNKIGNLHAECISNMRTLTFLGLNNTNITILSLEVLYLGFNEIDAEGVEYLVKMKTLKT 277

Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
           L L    I   GA  +    NLR L +    + D GV++I  ++SL  L +  N  +T  
Sbjct: 278 LILNDNPIGQLGAVLISKLTNLRELNLTNTCMNDKGVEYISKMASLRDLQIGTNHMITKL 337

Query: 437 TLELISGLTGLVSLNVSNSRITSAGLRHL 465
               +S +  L  L+V  + I   G+  L
Sbjct: 338 GALYLSQMKNLQRLSVPATSINDQGVEFL 366



 Score = 43.1 bits (100), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 1/132 (0%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           +I   G+E+L  +  L +L    +N I   G    + L NL +L+L        G+  + 
Sbjct: 260 EIDAEGVEYLVKMKTLKTLILN-DNPIGQLGAVLISKLTNLRELNLTNTCMNDKGVEYIS 318

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
            +  L  L I   + IT      LS + NL+ L +  + + D G+ +L  L  L  L+  
Sbjct: 319 KMASLRDLQIGTNHMITKLGALYLSQMKNLQRLSVPATSINDQGVEFLVNLDSLQYLDAR 378

Query: 213 GCPVTAACLDSL 224
           G P++   L++L
Sbjct: 379 GLPLSIRGLETL 390


>gi|430746594|ref|YP_007205723.1| hypothetical protein Sinac_5912 [Singulisphaera acidiphila DSM
           18658]
 gi|430018314|gb|AGA30028.1| hypothetical protein Sinac_5912 [Singulisphaera acidiphila DSM
           18658]
          Length = 170

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 81/165 (49%), Gaps = 28/165 (16%)

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
           LK L + +T+VG +G+  L+    +  ++L  T I+D  L+ L G+ SL  L+L A  IT
Sbjct: 23  LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGIT 82

Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
           D GLA L  +  L  LDL   +I+D                        AG++H+K L  
Sbjct: 83  DAGLAHLAGMDRLERLDLGYTKISD------------------------AGIEHLKGLKG 118

Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
           L ++      N+TD+++ +I G   L ++N   S+IT AG   L 
Sbjct: 119 LDIV----ETNVTDRSIPIIGGFERLEAINPRGSKITEAGEEQLR 159



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 89/170 (52%), Gaps = 8/170 (4%)

Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
           NL+GCP        LSA+  L  L +   ++ D G  + +    +  L+L   +ITD  L
Sbjct: 6   NLQGCPNANGI--RLSAV-VLKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGL 62

Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
             LKG+ +L  L+L + GI D GL +L G+  L+ L+L  T++  +G+ HL GL  L+ +
Sbjct: 63  KPLKGMKSLVHLSLRATGITDAGLAHLAGMDRLERLDLGYTKISDAGIEHLKGLKGLDIV 122

Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
               T ++D S+  + G   L+++N    +IT+ G   L  +  L  LD+
Sbjct: 123 E---TNVTDRSIPIIGGFERLEAINPRGSKITEAGEEQLRKM--LPKLDI 167



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 77/142 (54%), Gaps = 3/142 (2%)

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           L+ L +++  +GD G+  L     +  L+L  T++  +GL+ L G+ +L  ++L  TGI+
Sbjct: 23  LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGIT 82

Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
           D  L  LAG+  L+ L+L   +I+D G+  L  L G   LD+    +TD     +  F+ 
Sbjct: 83  DAGLAHLAGMDRLERLDLGYTKISDAGIEHLKGLKG---LDIVETNVTDRSIPIIGGFER 139

Query: 398 LRSLEICGGGLTDAGVKHIKDL 419
           L ++   G  +T+AG + ++ +
Sbjct: 140 LEAINPRGSKITEAGEEQLRKM 161



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 71/139 (51%), Gaps = 3/139 (2%)

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
           LK L I  ++V D+G+A L     +  L+L G  +T A L  L  + SL +L+L    ++
Sbjct: 23  LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGIT 82

Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
           D G    + +  L+ L+LG+ +I+D  + HLKG   L+ L++    + D  +  + G   
Sbjct: 83  DAGLAHLAGMDRLERLDLGYTKISDAGIEHLKG---LKGLDIVETNVTDRSIPIIGGFER 139

Query: 302 LKCLELSDTQVGSSGLRHL 320
           L+ +    +++  +G   L
Sbjct: 140 LEAINPRGSKITEAGEEQL 158



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 3/125 (2%)

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           + D+ M  L+    +  L +  +K+TD+G+  LKG++ L  L+L    +T A L  L+ +
Sbjct: 33  VGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGITDAGLAHLAGM 92

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
             L  L+L   ++SD G E       LK L++    +TD  +  + G   LE++N     
Sbjct: 93  DRLERLDLGYTKISDAGIEHLK---GLKGLDIVETNVTDRSIPIIGGFERLEAINPRGSK 149

Query: 288 IGDEG 292
           I + G
Sbjct: 150 ITEAG 154



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 14/160 (8%)

Query: 77  LKDCSNLQSLDFNFCI---------QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
           L+ C N   +  +  +         ++ D G+  L     +  L       IT  G+K  
Sbjct: 7   LQGCPNANGIRLSAVVLKRLAIENTRVGDAGMAQLASHPGIAELDLH-GTKITDAGLKPL 65

Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
            G+ +LV L L        GL +L G+ +LE L++ +   I+D+ ++ L G   LK L I
Sbjct: 66  KGMKSLVHLSLRATGITDAGLAHLAGMDRLERLDLGYTK-ISDAGIEHLKG---LKGLDI 121

Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
             + VTD  I  + G ++L  +N  G  +T A  + L  +
Sbjct: 122 VETNVTDRSIPIIGGFERLEAINPRGSKITEAGEEQLRKM 161



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 4/136 (2%)

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
           N  +   GM   A    + +LDL        GL  LKG+  L  L+++    ITD+ +  
Sbjct: 30  NTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLR-ATGITDAGLAH 88

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           L+G+  L+ L +  +K++D+GI +LKGL+ L ++      VT   +  +     L  +N 
Sbjct: 89  LAGMDRLERLDLGYTKISDAGIEHLKGLKGLDIVETN---VTDRSIPIIGGFERLEAINP 145

Query: 236 NRCQLSDDGCEKFSKI 251
              ++++ G E+  K+
Sbjct: 146 RGSKITEAGEEQLRKM 161



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 14/82 (17%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL-------SNLT 109
            SL+ + L  + +TD+GL HL     L+ LD  +  +ISD G+EHL+GL       +N+T
Sbjct: 69  KSLVHLSLRATGITDAGLAHLAGMDRLERLDLGYT-KISDAGIEHLKGLKGLDIVETNVT 127

Query: 110 SLS------FRRNNAITAQGMK 125
             S      F R  AI  +G K
Sbjct: 128 DRSIPIIGGFERLEAINPRGSK 149



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 31/158 (19%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
           V D  M  +AS    +  +DL G+ +TD+                         GL+ L+
Sbjct: 33  VGDAGMAQLASH-PGIAELDLHGTKITDA-------------------------GLKPLK 66

Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
           G+ +L  LS  R   IT  G+   AG+  L +LDL        G+ +LKG   L+ L+I 
Sbjct: 67  GMKSLVHLSL-RATGITDAGLAHLAGMDRLERLDLGYTKISDAGIEHLKG---LKGLDIV 122

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
             N +TD  +  + G   L+++    SK+T++G   L+
Sbjct: 123 ETN-VTDRSIPIIGGFERLEAINPRGSKITEAGEEQLR 159


>gi|71650734|ref|XP_814059.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70878999|gb|EAN92208.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 934

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 121/482 (25%), Positives = 216/482 (44%), Gaps = 65/482 (13%)

Query: 31  CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNF 90
           CAL+DL L  Y  V ++ M    S+ + L  + L G    +S L  L+  + L+ LD  +
Sbjct: 371 CALRDLDLS-YTQVTEEGMYRDVSKLNKLSRLSLEGCRKIES-LQWLRALNQLRVLDLGY 428

Query: 91  CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI--NLVKLDLERCTRIHGGL 148
              ++D  L  LR    L  L  +    IT+  +K   G +  +L +L+L   +    GL
Sbjct: 429 S-SVTDDSLTALRFCPELAKLDLQWCGRITS--LKCLVGALCDSLRELNLTETSVTDEGL 485

Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
           V LK    LE ++++ C  ++D ++  L  LT L+ + +  ++VT+ G+  L   Q L +
Sbjct: 486 VPLKYFAALEWISLEGCGAVSDVNV--LCNLTRLREVDVGRTRVTNRGVVSLSQCQALRV 543

Query: 209 LNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITD 266
           + +  C  +T A    L AL  L  ++L+ C ++++G  +     SL+ L L   + ++D
Sbjct: 544 MRMRQCYRLTDASF--LGALQQLEEVDLSDCPVTNEGIAELFGARSLRKLRLQSCHAVSD 601

Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG-------------------------LCN 301
             +  L GL +L  L+L    + +EG V L                           L  
Sbjct: 602 --VNFLGGLEHLMLLDLHHTTVDEEGSVGLAQCPQLMTLIMHSVLVHSLQQWNTALFLPR 659

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINL----SFTGISDGSLRKLAGLSSLKSLNLDA 357
           LK L+LS T+V S  L  +     LE+++L    + T +    L+  +G      +  DA
Sbjct: 660 LKRLDLSTTKVTSDALSFVRMCPILETLSLRGCKNITHLDFLILQPSSGAGVCAIVPRDA 719

Query: 358 R-------------QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
                         +  D G + + ++T      +    I  + AA + +   LR L + 
Sbjct: 720 EPHDTVGDTIAGKEKNPDDGPSPIETMT------INDGVIKSTAAAAVVDRHRLRELTLS 773

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
             G+TD G++ ++    L  L L+   N+TD  + ++  L+ L  L++S + +T +GL  
Sbjct: 774 DTGVTDDGLRALQYCPGLERLRLAHCKNVTD--VAVLRWLSQLKELDLSATGVTGSGLAK 831

Query: 465 LN 466
           L+
Sbjct: 832 LS 833



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 7/167 (4%)

Query: 299 LCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNLD 356
           LC L+ L+LS TQV   G+ R +S L  L    LS  G     SL+ L  L+ L+ L+L 
Sbjct: 370 LCALRDLDLSYTQVTEEGMYRDVSKLNKLS--RLSLEGCRKIESLQWLRALNQLRVLDLG 427

Query: 357 ARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
              +TD  L AL     L  LDL +  RIT           +LR L +    +TD G+  
Sbjct: 428 YSSVTDDSLTALRFCPELAKLDLQWCGRITSLKCLVGALCDSLRELNLTETSVTDEGLVP 487

Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
           +K  ++L  ++L     ++D  + ++  LT L  ++V  +R+T+ G+
Sbjct: 488 LKYFAALEWISLEGCGAVSD--VNVLCNLTRLREVDVGRTRVTNRGV 532


>gi|401426392|ref|XP_003877680.1| hypothetical protein, unknown function [Leishmania mexicana
           MHOM/GT/2001/U1103]
 gi|322493926|emb|CBZ29217.1| hypothetical protein, unknown function [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 811

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 140/317 (44%), Gaps = 51/317 (16%)

Query: 63  DLSGSDVTDSGLIHLKDCSNLQSLDF--NFCIQISDGGLEHLRGL-------SNLTSLSF 113
           DLS +    + +  L+ C NL  LD   +F  Q    GLE L  L       +++ SL  
Sbjct: 472 DLSLAHTRVTNVTELQHCHNLWRLDLQGSFVDQAGIAGLERLPKLRVLLLSKTDVASLEL 531

Query: 114 RRNNAITAQ---------GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK-LESLNIK 163
              +A   Q            AF G+     L     T      +N  G+ K L  LN+ 
Sbjct: 532 ILQSASLEQLEVKFSRVNEKSAFFGVTKASALTYVTLTHCDVSDINNLGMCKELRLLNV- 590

Query: 164 WCNCITDSDMKPLSGLTNLKSLQ---------------ISCSKVT-----DSGIAYLKG- 202
           W + +T      ++GL + KSLQ               +SC+K+       S +  L G 
Sbjct: 591 WSSKVTSEG---IAGLCDAKSLQEVDLAETAVTDIGPLLSCTKIQALILYKSSVRSLDGI 647

Query: 203 --LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
             LQ+L  L++   PV++  + SLSA  SL  LNL+   + DDG +   +  SLKV+++ 
Sbjct: 648 GALQRLRRLDIAETPVSS--IRSLSACQSLEILNLSNTAVDDDGFQGIGQAQSLKVVSMS 705

Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
           F  IT   L  L   ++LE L   SC +  EGLV L   C L  L LS T++   G++ L
Sbjct: 706 FTAITQ--LGQLGQCSHLEELYAQSCPVTSEGLVGLEKACCLAKLNLSYTKI-QGGIQRL 762

Query: 321 SGLTNLESINLSFTGIS 337
           +    L  +N+ FT + 
Sbjct: 763 TNCRKLLKLNVKFTEVP 779



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 106/475 (22%), Positives = 203/475 (42%), Gaps = 80/475 (16%)

Query: 59  LLSVDLSGSDVTDSGLIHLKD-------------CSNLQSLDFN---FCIQISDG----- 97
           L SV LSG +V D+ + HL                +N+Q+L        IQ+S+      
Sbjct: 308 LRSVHLSGCNVKDADVPHLAQLPCVEELLLSRTRITNVQALATGKGLRIIQLSNAQVDSD 367

Query: 98  GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
           G++ L+ L  LT L     ++     +       +L+ L+L +      G+ +L  L+ L
Sbjct: 368 GIDGLQTLPYLTRLDL---SSTLVSDVNCLGQSQSLIYLNLAKTHVTSEGIADLSRLLTL 424

Query: 158 ESL-----NIKWCNCITDS-------------DMKPLSGLTNLKSLQ-ISCSKVTDSGIA 198
           E L     NI+  + + +S             D   L G   L++LQ +S +    + + 
Sbjct: 425 EHLMLNNNNIRDVSFLAESHSLKTLSLQSTLVDSAALEGFGRLQTLQDLSLAHTRVTNVT 484

Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
            L+    L  L+L+G  V  A +  L  L  L  L L++  ++    E   +  SL+ L 
Sbjct: 485 ELQHCHNLWRLDLQGSFVDQAGIAGLERLPKLRVLLLSKTDVA--SLELILQSASLEQLE 542

Query: 259 LGFNEITDE-CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC-NLKCLELSDTQVGSSG 316
           + F+ + ++     +   + L  + L  C + D   +N  G+C  L+ L +  ++V S G
Sbjct: 543 VKFSRVNEKSAFFGVTKASALTYVTLTHCDVSD---INNLGMCKELRLLNVWSSKVTSEG 599

Query: 317 LRHLSGLTNLESINLSFTGISD-----------------GSLRKLAGLSSLKSL-NLDAR 358
           +  L    +L+ ++L+ T ++D                  S+R L G+ +L+ L  LD  
Sbjct: 600 IAGLCDAKSLQEVDLAETAVTDIGPLLSCTKIQALILYKSSVRSLDGIGALQRLRRLDIA 659

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG----VK 414
           +   + + +L++   L  L+L    + D G   +   ++L+ + +    +T  G      
Sbjct: 660 ETPVSSIRSLSACQSLEILNLSNTAVDDDGFQGIGQAQSLKVVSMSFTAITQLGQLGQCS 719

Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           H+++L        +Q+C +T + L  +     L  LN+S ++I   G++ L + R
Sbjct: 720 HLEEL-------YAQSCPVTSEGLVGLEKACCLAKLNLSYTKI-QGGIQRLTNCR 766



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 140/335 (41%), Gaps = 42/335 (12%)

Query: 55  QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSL--------DFNFCIQ------------- 93
           Q  SL+ ++L+ + VT  G+  L     L+ L        D +F  +             
Sbjct: 396 QSQSLIYLNLAKTHVTSEGIADLSRLLTLEHLMLNNNNIRDVSFLAESHSLKTLSLQSTL 455

Query: 94  ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
           +    LE    L  L  LS           ++      NL +LDL+      G  V+  G
Sbjct: 456 VDSAALEGFGRLQTLQDLSLAHTRVTNVTELQHCH---NLWRLDLQ------GSFVDQAG 506

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGL---TNLKSLQISCSKVTDSGIAY-LKGLQKLTLL 209
           +  LE L       ++ +D+  L  +    +L+ L++  S+V +    + +     LT +
Sbjct: 507 IAGLERLPKLRVLLLSKTDVASLELILQSASLEQLEVKFSRVNEKSAFFGVTKASALTYV 566

Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
            L  C V+   +++L     L  LN+   +++ +G        SL+ ++L    +TD  +
Sbjct: 567 TLTHCDVSD--INNLGMCKELRLLNVWSSKVTSEGIAGLCDAKSLQEVDLAETAVTD--I 622

Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
             L   T +++L L    +    L  +  L  L+ L++++T V S  +R LS   +LE +
Sbjct: 623 GPLLSCTKIQALILYKSSV--RSLDGIGALQRLRRLDIAETPVSS--IRSLSACQSLEIL 678

Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
           NLS T + D   + +    SLK +++    IT  G
Sbjct: 679 NLSNTAVDDDGFQGIGQAQSLKVVSMSFTAITQLG 713


>gi|71657215|ref|XP_817126.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70882298|gb|EAN95275.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 835

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 112/419 (26%), Positives = 184/419 (43%), Gaps = 68/419 (16%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           S+L ++ L  + +++  +++L +C +L+ +  N C  +    LE L  L  LT LS   N
Sbjct: 193 SNLRNLTLCNTPLSEVMMLYLSECVSLERVVVNSCRGLR--SLECLSSLQRLTELSLL-N 249

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             IT +G+ AF          + RC  +    + L   MKL+ +N              L
Sbjct: 250 MGITEEGL-AF----------ISRCNSLRH--IQLDNCMKLQGINC-------------L 283

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
             L  L++L +S ++V+D GI  L  L+ L  L L      ++ ++ +  L  L  L+L 
Sbjct: 284 GSLIGLRTLSVSRNRVSDDGIRSLSNLRNLEQLRLVSFNRLSS-VEPVLCLDKLLELDLT 342

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
              ++D+GC   +  G ++ L L       + +  +  LT+L  L+L    +    L  L
Sbjct: 343 ENWVTDEGCAALANCGQIQKLKLASCRCVSD-VRWICALTSLRFLDLSKTHVRSADLQLL 401

Query: 297 TGLCNLKCLELSDTQVGS-SGLRHLS---GLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
           T      C  L +  V S SG++  S   GL +L  ++L+ T I D   R L   ++L  
Sbjct: 402 T-----MCQRLEELHVASCSGVKDASFVEGLLSLGHLDLTDTSIKDAGTRSLRKCTALTF 456

Query: 353 LNL-DARQITDTGL-------------------AALTSLTGLTHLDLFGAR----ITDSG 388
           L+L D R +TD                      A +  L   T L++   R    +TD  
Sbjct: 457 LSLQDCRFLTDIQFVEPLRNLLNLNLEGTEVVDANIIPLMHCTKLEVLSLRHCLFLTD-- 514

Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
              LR  K L+SL++ G  +TD GV  +    SL  ++LS+ C +T    E +  LT L
Sbjct: 515 VRCLRELKALKSLDLSGTYVTDEGVSDVSQCISLERIDLSECCLITH--FEFLRPLTAL 571



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 31/225 (13%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           +L S+DLSG+ VTD G+  +  C +L+ +D + C  I+    E LR L+ L  +   R N
Sbjct: 523 ALKSLDLSGTYVTDEGVSDVSQCISLERIDLSECCLITH--FEFLRPLTALRHVIADRMN 580

Query: 118 AITAQGMKAFAGLINLVKLDLERC-----------------------TRIHGGLVNLKGL 154
            +   G+     +  +   D +R                        + IH  L+    L
Sbjct: 581 VLDVTGLGGSGSVEGVSIADCKRLGSMGLLEAPRLLDLSLKKSAITDSGIHSVLLRCHSL 640

Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
            +   LN++  NC + +++  ++ L +L  L +   K+T+  +A++     L  L +  C
Sbjct: 641 RR---LNLQ--NCTSITELSAVAQLPSLTELLVRNMKITNKSVAFVARCATLEKLQMVEC 695

Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
            V    ++SL  L  L  L+L+R  ++  G    ++  +LK LNL
Sbjct: 696 -VEITDVNSLKYLHRLVELDLSRTSVTSGGIVGLARCYNLKKLNL 739



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 108/425 (25%), Positives = 171/425 (40%), Gaps = 97/425 (22%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF----- 113
           LL +DL+ + VTD G   L +C  +Q L    C  +SD     +R +  LTSL F     
Sbjct: 336 LLELDLTENWVTDEGCAALANCGQIQKLKLASCRCVSD-----VRWICALTSLRFLDLSK 390

Query: 114 -----------------RRNNAITAQGMK--AFA-GLINLVKLDLERCTRIHGGLVNLKG 153
                               +  +  G+K  +F  GL++L  LDL   +    G  +L+ 
Sbjct: 391 THVRSADLQLLTMCQRLEELHVASCSGVKDASFVEGLLSLGHLDLTDTSIKDAGTRSLRK 450

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
              L  L+++ C  +TD  ++ +  L NL +L +  ++V D+ I  L    KL +L+L  
Sbjct: 451 CTALTFLSLQDCRFLTD--IQFVEPLRNLLNLNLEGTEVVDANIIPLMHCTKLEVLSLRH 508

Query: 214 CP--VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV- 270
           C       CL  L AL SL   +L+   ++D+G    S+  SL+ ++L     ++ CL+ 
Sbjct: 509 CLFLTDVRCLRELKALKSL---DLSGTYVTDEGVSDVSQCISLERIDL-----SECCLIT 560

Query: 271 HLKGLTNLESLN---------LDSCGIGDEGLVNLTGLCNLKCL---------------- 305
           H + L  L +L          LD  G+G  G V    + + K L                
Sbjct: 561 HFEFLRPLTALRHVIADRMNVLDVTGLGGSGSVEGVSIADCKRLGSMGLLEAPRLLDLSL 620

Query: 306 ---ELSDTQVGSSGLR----------------------HLSGLTNLESINLSFTGISDGS 340
               ++D+ + S  LR                       L  LT L   N+  T  S   
Sbjct: 621 KKSAITDSGIHSVLLRCHSLRRLNLQNCTSITELSAVAQLPSLTELLVRNMKITNKSVAF 680

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
           + + A L  L+ +  +  +ITD    +L  L  L  LDL    +T  G   L    NL+ 
Sbjct: 681 VARCATLEKLQMV--ECVEITDVN--SLKYLHRLVELDLSRTSVTSGGIVGLARCYNLKK 736

Query: 401 LEICG 405
           L + G
Sbjct: 737 LNLSG 741


>gi|167393817|ref|XP_001740724.1| F-box/leucine rich repeat protein [Entamoeba dispar SAW760]
 gi|165895051|gb|EDR22856.1| F-box/leucine rich repeat protein, putative [Entamoeba dispar
           SAW760]
          Length = 659

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 165/366 (45%), Gaps = 44/366 (12%)

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
           LS SD    G I+L  C++L+ L  N   +++   L+ L  + NL  +S +    ++   
Sbjct: 260 LSPSD----GFIYLAGCNSLRYLYLNES-EVTSYHLDVLARMDNLLGISLKGCPTLSDYS 314

Query: 124 MKAF-AGLI--NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           +  F  G I  +L +L++      H GL  +  L  L  L+I  CN I    + PL+ L 
Sbjct: 315 LTPFKTGPIRNSLEELNISDTMVTHIGLQIVARLKYLRVLDISRCNGI--KILSPLNSLK 372

Query: 181 NLKSLQISCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNR 237
            L+ L++S  +V    +  A+    + L  L ++  P+  + L  + S   +L  +NL  
Sbjct: 373 YLEVLRLSNVRVNSDTLQDAFRTPPKYLQQLLVDAGPIDDSLLTVICSKFPNLVSVNLKE 432

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL 296
            Q++  G E    +  L+ ++ G   + D+    L  +T+LE+++ + C  I  EG+  L
Sbjct: 433 SQITSPGVEALQMVKYLRYVDFGKTSVDDQVFEFLCKITSLETISFEGCQNISGEGVHVL 492

Query: 297 TGLCNLKCL--------------ELSD-----------TQVGSSGLRHLSGLTNLESINL 331
             L  L+ L              E+ D           +Q+G  G ++++ +  ++ ++L
Sbjct: 493 EPLRGLRVLNFNGCKNFSEYALKEMEDLSVETLRVAGASQIGMMGWKYIAQIEQIKRLDL 552

Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
           SFT + D  ++++     L+ + L   ++TD  +  L     +  +D   AR T+    Y
Sbjct: 553 SFTSVDDNGVQEILKSKWLEVIYLRHTKVTDKSIETLLCCNLIRKID---ARETNVVKQY 609

Query: 392 LRNFKN 397
             NF N
Sbjct: 610 --NFSN 613



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 103/416 (24%), Positives = 161/416 (38%), Gaps = 73/416 (17%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           SNL SL    C +IS   L+ L  L  L        N I   G++               
Sbjct: 115 SNLTSLK---CGKISQDTLDELYTLKRLEC-----PNVIPPYGVEQI------------- 153

Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
              + G + N+     L SL I     ITDSD+  +  LT LK L IS  K     I  L
Sbjct: 154 ---VSGSVQNITKYTSLTSLQIY---NITDSDIPSIGKLTGLKKLSISSKKFI-GKIEDL 206

Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL---------------SDDGC 245
             + +LT L +   P+      +L     L ++    C L                 DG 
Sbjct: 207 IDVSQLTSLEISNAPLGPEFYYNLYLFPYLVFIGFTHCHLPISGVSAQTPLSQLSPSDGF 266

Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNL-TGLC--N 301
              +   SL+ L L  +E+T   L  L  + NL  ++L  C  + D  L    TG    +
Sbjct: 267 IYLAGCNSLRYLYLNESEVTSYHLDVLARMDNLLGISLKGCPTLSDYSLTPFKTGPIRNS 326

Query: 302 LKCLELSDTQVGSSGLR-----------------------HLSGLTNLESINLSFTGISD 338
           L+ L +SDT V   GL+                        L+ L  LE + LS   ++ 
Sbjct: 327 LEELNISDTMVTHIGLQIVARLKYLRVLDISRCNGIKILSPLNSLKYLEVLRLSNVRVNS 386

Query: 339 GSLRKL--AGLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARITDSGAAYLRNF 395
            +L+         L+ L +DA  I D+ L  + S    L  ++L  ++IT  G   L+  
Sbjct: 387 DTLQDAFRTPPKYLQQLLVDAGPIDDSLLTVICSKFPNLVSVNLKESQITSPGVEALQMV 446

Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
           K LR ++     + D   + +  ++SL  ++     N++ + + ++  L GL  LN
Sbjct: 447 KYLRYVDFGKTSVDDQVFEFLCKITSLETISFEGCQNISGEGVHVLEPLRGLRVLN 502


>gi|320169490|gb|EFW46389.1| hypothetical protein CAOG_04357 [Capsaspora owczarzaki ATCC 30864]
          Length = 620

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 129/296 (43%), Gaps = 5/296 (1%)

Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINL--VKLDLERCTRIHGGLVNLKGLMKLESLN 161
           G+   T   +  NN I +    AF+GL  L  + LD  + T I         L  LE L 
Sbjct: 54  GIPVTTRALYLSNNQIASIPAYAFSGLTALTWLYLDSNQITSISASA--FSDLTSLEQLR 111

Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
           ++  N IT       +GLT +  L ++ +++T        GL  L  L L    +T+   
Sbjct: 112 MEE-NQITSISDGAFTGLTAVLELGLNRNQITSISANAFTGLTGLHFLELSNNQLTSIPS 170

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
              +++ +L  L L + +++      F+ + +LK L L  N IT       +GL+ L  L
Sbjct: 171 SVFASVTTLLDLLLYKNRITSIPTSAFTTLTALKTLRLYDNPITSISANAFEGLSALTVL 230

Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
           +L S  I      + TGL  L+ L L   Q+ +      +GLT ++++ L    I+  S 
Sbjct: 231 HLSSNHITSILPSSFTGLTALEALLLDKNQISNIPASAFTGLTAMQTLYLDSNRITSIST 290

Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
               GL++L  + LD+ QIT     A T LT LT+L L G   T       +   N
Sbjct: 291 NAFTGLTALTYMYLDSNQITRIPANAFTGLTALTYLTLDGNPFTTLPPGLFKGLPN 346



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 105/255 (41%)

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
            SGLT L  L +  +++T    +    L  L  L +E   +T+    + + L ++  L L
Sbjct: 77  FSGLTALTWLYLDSNQITSISASAFSDLTSLEQLRMEENQITSISDGAFTGLTAVLELGL 136

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           NR Q++      F+ +  L  L L  N++T         +T L  L L    I       
Sbjct: 137 NRNQITSISANAFTGLTGLHFLELSNNQLTSIPSSVFASVTTLLDLLLYKNRITSIPTSA 196

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
            T L  LK L L D  + S       GL+ L  ++LS   I+        GL++L++L L
Sbjct: 197 FTTLTALKTLRLYDNPITSISANAFEGLSALTVLHLSSNHITSILPSSFTGLTALEALLL 256

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
           D  QI++   +A T LT +  L L   RIT            L  + +    +T      
Sbjct: 257 DKNQISNIPASAFTGLTAMQTLYLDSNRITSISTNAFTGLTALTYMYLDSNQITRIPANA 316

Query: 416 IKDLSSLTLLNLSQN 430
              L++LT L L  N
Sbjct: 317 FTGLTALTYLTLDGN 331



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 1/204 (0%)

Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
           + L L  N+I         GLT L  L LDS  I        + L +L+ L + + Q+ S
Sbjct: 60  RALYLSNNQIASIPAYAFSGLTALTWLYLDSNQITSISASAFSDLTSLEQLRMEENQITS 119

Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
                 +GLT +  + L+   I+  S     GL+ L  L L   Q+T    +   S+T L
Sbjct: 120 ISDGAFTGLTAVLELGLNRNQITSISANAFTGLTGLHFLELSNNQLTSIPSSVFASVTTL 179

Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
             L L+  RIT    +       L++L +    +T       + LS+LT+L+LS N ++T
Sbjct: 180 LDLLLYKNRITSIPTSAFTTLTALKTLRLYDNPITSISANAFEGLSALTVLHLSSN-HIT 238

Query: 435 DKTLELISGLTGLVSLNVSNSRIT 458
                  +GLT L +L +  ++I+
Sbjct: 239 SILPSSFTGLTALEALLLDKNQIS 262



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 99/227 (43%), Gaps = 1/227 (0%)

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           L L+  Q++      FS + +L  L L  N+IT         LT+LE L ++   I    
Sbjct: 62  LYLSNNQIASIPAYAFSGLTALTWLYLDSNQITSISASAFSDLTSLEQLRMEENQITSIS 121

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
               TGL  +  L L+  Q+ S      +GLT L  + LS   ++       A +++L  
Sbjct: 122 DGAFTGLTAVLELGLNRNQITSISANAFTGLTGLHFLELSNNQLTSIPSSVFASVTTLLD 181

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
           L L   +IT    +A T+LT L  L L+   IT   A        L  L +    +T   
Sbjct: 182 LLLYKNRITSIPTSAFTTLTALKTLRLYDNPITSISANAFEGLSALTVLHLSSNHITSIL 241

Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
                 L++L  L L +N  +++      +GLT + +L + ++RITS
Sbjct: 242 PSSFTGLTALEALLLDKN-QISNIPASAFTGLTAMQTLYLDSNRITS 287


>gi|334145937|ref|YP_004508864.1| leucine-rich protein [Porphyromonas gingivalis TDC60]
 gi|333803091|dbj|BAK24298.1| leucine-rich protein [Porphyromonas gingivalis TDC60]
          Length = 1384

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 136/419 (32%), Positives = 199/419 (47%), Gaps = 51/419 (12%)

Query: 57  SSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--F 113
           +SL  +DL G+ +    GL HL   + L          +S   +  L GL +LTSL+  +
Sbjct: 197 TSLTRLDLRGNQIAKLEGLDHLTSLTGLN---------LSGNQIRKLEGLDSLTSLTELY 247

Query: 114 RRNNAITA-QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
              N I   +G+ A   L  L  L   +  ++ G    L  L  L  LN+   N I  S 
Sbjct: 248 LSGNQIAKLEGLNALTSLTELY-LSGNQIAKLEG----LNALTSLTGLNLS-GNQI--SK 299

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL---NLEGCPVTAACLDSLSALGS 229
           ++ L+ LT+L  L +S     D+ IA L+GL  LT L   +L G  +  A L+ L  L S
Sbjct: 300 LESLASLTSLTRLNLS-----DNQIAKLEGLNALTSLTGLDLRGNQI--AKLEGLDHLTS 352

Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
           L  L+L   Q+     E    + SL  L+L  N+I+   L  L  LT+L  L+L    I 
Sbjct: 353 LTRLDLRGNQIR--KLEGLDSLTSLTQLDLSGNQISK--LESLNALTSLTELDLSDNQIA 408

Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
              L +L  L +L  L+LSD Q+    L  L+ LT+L  ++L    I+   L  L  L+S
Sbjct: 409 --TLESLASLTSLTELDLSDNQIAK--LEGLNALTSLTGLDLRGNQIA--KLEGLDHLTS 462

Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409
           L  L+L   QI    L  L SLT LT LDL G +I  S    L    +L  L++    + 
Sbjct: 463 LTRLDLRGNQIR--KLEGLDSLTSLTQLDLSGNQI--SKLESLNALTSLTELDLSDNQI- 517

Query: 410 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHLNH 467
            A ++ +  L+SLT L+LS N       LE ++ LT L  L++S+++I    GL+ L  
Sbjct: 518 -ATLEGLNALTSLTRLDLSDN---QIAKLESLASLTSLTRLDLSDNQIAKLEGLKDLTQ 572



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 153/491 (31%), Positives = 210/491 (42%), Gaps = 88/491 (17%)

Query: 23  VSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSN 82
           + +E   +  + DL L    G  D W+D    Q SS   V+L        G   L D   
Sbjct: 10  LDIEKTYNIDIPDLSLQ---GEIDWWVDRYFKQDSSGAVVELRLRSCHIDGKAWLVDFPA 66

Query: 83  LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE-RC 141
           L+ LD ++       GL+HL   ++LT L    N     +G+ A   L +L +LDL    
Sbjct: 67  LKKLDLSYNQIRKFEGLDHL---ASLTELDLSGNQIAKLEGLNA---LTSLTRLDLSYNQ 120

Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
            R   GL +L  L +L+         ++ + +  L GL  L SL  +   ++D+ IA L+
Sbjct: 121 IRKFEGLDHLASLTELD---------LSGNQIAKLEGLNALTSL--TRLDLSDNQIAKLE 169

Query: 202 GLQKLTLLN---LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
           GL  LT L    L G  +  A L+ L  L SL  L+L   Q++    E    + SL  LN
Sbjct: 170 GLDSLTSLTELYLSGNQI--AKLEGLDHLTSLTRLDLRGNQIA--KLEGLDHLTSLTGLN 225

Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGL 317
           L  N+I    L  L  LT+L  L L    I   EGL  LT L  L    LS  Q+    L
Sbjct: 226 LSGNQI--RKLEGLDSLTSLTELYLSGNQIAKLEGLNALTSLTELY---LSGNQIAK--L 278

Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGL-- 374
             L+ LT+L  +NLS   IS   L  LA L+SL  LNL   QI    GL ALTSLTGL  
Sbjct: 279 EGLNALTSLTGLNLSGNQIS--KLESLASLTSLTRLNLSDNQIAKLEGLNALTSLTGLDL 336

Query: 375 ---------------------------------------THLDLFGARITDSGAAYLRNF 395
                                                  T LDL G +I  S    L   
Sbjct: 337 RGNQIAKLEGLDHLTSLTRLDLRGNQIRKLEGLDSLTSLTQLDLSGNQI--SKLESLNAL 394

Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
            +L  L++    +  A ++ +  L+SLT L+LS N       LE ++ LT L  L++  +
Sbjct: 395 TSLTELDLSDNQI--ATLESLASLTSLTELDLSDN---QIAKLEGLNALTSLTGLDLRGN 449

Query: 456 RITS-AGLRHL 465
           +I    GL HL
Sbjct: 450 QIAKLEGLDHL 460


>gi|254410000|ref|ZP_05023780.1| Ras family, putative [Coleofasciculus chthonoplastes PCC 7420]
 gi|196183036|gb|EDX78020.1| Ras family, putative [Coleofasciculus chthonoplastes PCC 7420]
          Length = 1115

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 158/315 (50%), Gaps = 24/315 (7%)

Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKL 157
           E +  L NLT LS  RN     Q  ++ + L+NL +L+L   + T++   +  L  L +L
Sbjct: 131 ESISQLVNLTQLSLSRNQL--TQVPESISQLVNLTQLNLSYNQLTQVPESISQLVNLTQL 188

Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
           + L++     + +S    +S L NL  L +S +++T    + +  L  LT L+L G  +T
Sbjct: 189 D-LSVNKLTQVPES----ISQLVNLTQLNLSYNQLTQVSES-ISQLVNLTQLSLSGNKLT 242

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
               +S+S L +L  L+L+  +L+    E  S++ +L  L+L  N++T +    +  L N
Sbjct: 243 QVS-ESISQLVNLTQLSLSGNKLTQ-VPESISQLVNLTQLSLSDNQLT-QVSESISQLVN 299

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSD---TQVGSSGLRHLSGLTNLESINLSFT 334
           L  L+L S  +      +++ L NL  L+LS    TQV  S    +S L NL  +NLS  
Sbjct: 300 LTQLDLSSNQLTQVS-ESISQLVNLTQLDLSSNQLTQVSES----ISQLVNLTQLNLSIN 354

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            ++      ++ L +L  LNL   Q+T     +++ L  LT LDLFG +IT+    +L  
Sbjct: 355 KLTQVP-ESISQLVNLTWLNLSDNQLTQVP-ESISQLVNLTQLDLFGNKITEI-PDWLEE 411

Query: 395 FKNLRSLEICGGGLT 409
             NL+ L++    L 
Sbjct: 412 LPNLKELDLRQNPLP 426


>gi|320167410|gb|EFW44309.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 702

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 123/296 (41%), Gaps = 1/296 (0%)

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
           + N IT       + LT L  L +  +++T        GL  LTLL+L   P+T+    +
Sbjct: 67  YTNNITSIPANAFASLTRLTILTLDVNQITSIPATAFTGLSALTLLSLGSNPITSMSASA 126

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
            + L  L  L+L+   ++      F+ + +L  + L   +IT         L +L+ L L
Sbjct: 127 FTDLTKLTQLSLDNTPITSISANAFAGLSALTQMFLYQTQITSISASAFADLRSLQKLYL 186

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
               I        TGL  L  L+LS  Q+ S      + L++L  + L F  +S  +   
Sbjct: 187 YGNRITSISANAFTGLTKLAYLDLSYNQITSISANAFADLSSLTDLRLYFNQMSSLAANT 246

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
             GLS+L  L+L   QIT     A T L  L  L L    IT   A       +L  L++
Sbjct: 247 FTGLSALTQLSLLNNQITAISANAFTGLNALKLLYLHNNLITTIAANSFAGLPSLTVLQV 306

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
               +T         LS+LT+  L+ N  +T       + LT L  L + N+  T+
Sbjct: 307 YNNTITSISANAFTGLSALTMFLLNYN-QITSIPASAFTELTTLQVLALDNNPFTT 361



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 78/194 (40%), Gaps = 11/194 (5%)

Query: 94  ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHG-GLVN 150
           IS      LR L  L    +   N IT+    AF GL  L  LDL   + T I      +
Sbjct: 170 ISASAFADLRSLQKL----YLYGNRITSISANAFTGLTKLAYLDLSYNQITSISANAFAD 225

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
           L  L  L      + N ++       +GL+ L  L +  +++T        GL  L LL 
Sbjct: 226 LSSLTDLR----LYFNQMSSLAANTFTGLSALTQLSLLNNQITAISANAFTGLNALKLLY 281

Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
           L    +T    +S + L SL  L +    ++      F+ + +L +  L +N+IT     
Sbjct: 282 LHNNLITTIAANSFAGLPSLTVLQVYNNTITSISANAFTGLSALTMFLLNYNQITSIPAS 341

Query: 271 HLKGLTNLESLNLD 284
               LT L+ L LD
Sbjct: 342 AFTELTTLQVLALD 355



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 90/212 (42%), Gaps = 20/212 (9%)

Query: 14  LVYSRCLTEVSLEAFRDC-ALQDLCLGQYPGVNDKWMDVIASQG-SSLLSVDLSGSDVTD 71
            +Y   +T +S  AF D  +LQ L L    G     +   A  G + L  +DLS + +T 
Sbjct: 161 FLYQTQITSISASAFADLRSLQKLYLY---GNRITSISANAFTGLTKLAYLDLSYNQITS 217

Query: 72  SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
                  D S+L  L   F  Q+S        GLS LT LS   NN ITA    AF GL 
Sbjct: 218 ISANAFADLSSLTDLRLYFN-QMSSLAANTFTGLSALTQLSLL-NNQITAISANAFTGL- 274

Query: 132 NLVKLDLERCTRIHGGLV------NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
           N +KL       +H  L+      +  GL  L  L + + N IT       +GL+ L   
Sbjct: 275 NALKL-----LYLHNNLITTIAANSFAGLPSLTVLQV-YNNTITSISANAFTGLSALTMF 328

Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
            ++ +++T    +    L  L +L L+  P T
Sbjct: 329 LLNYNQITSIPASAFTELTTLQVLALDNNPFT 360


>gi|326507660|dbj|BAK03223.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 454

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 175/383 (45%), Gaps = 57/383 (14%)

Query: 82  NLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           +L+ LD + C  ++  G+  + + L NL  L+      +TA   K F  L  L  L LE 
Sbjct: 41  SLRVLDMSTCRNVTHTGVSSVVKALPNLLELNLSYCCNVTASMGKCFQMLPKLQTLKLEG 100

Query: 141 CTRIHGGLVNLK-GLMKLESLNIKWCNCITDSDMK-PLSGLTNLKSLQISCSK-VTDSGI 197
           C  +  GL ++    + L  L++  C+ +TD+D+   +S L NL  L I+C++ +TD  +
Sbjct: 101 CKFMADGLKHIGISCVSLRELSLSKCSGVTDTDLSFVVSRLKNLLKLDITCNRNITDVSL 160

Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSLK 255
           A                 +T++C        SL  L +  C   S +G     K    L+
Sbjct: 161 A----------------AITSSC-------HSLISLRIESCSHFSSEGLRLIGKRCCHLE 197

Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGS 314
            L++  +++ DE L  L G + L SL +  C  I D+GL+++       C EL D  +  
Sbjct: 198 ELDITDSDLDDEGLKALSGCSKLSSLKIGICMRISDQGLIHIGK----SCPELRDIDLYR 253

Query: 315 SGLRHLSGLTN-------LESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGL 365
           SG     G+T        LESINLS+ T I+D SL  L+  + L +L +     I+  GL
Sbjct: 254 SGGISDEGVTQIAQGCPMLESINLSYCTEITDVSLMSLSKCAKLNTLEIRGCPSISSAGL 313

Query: 366 AALT-SLTGLTHLDLFGA-RITDSGAAYLRNFKN-LRSLEICGGGLTDAGVKHIKDLSSL 422
           + +      L  LD+     I D G  +L  F + LR + +    +TD G          
Sbjct: 314 SEIAIGCRLLAKLDVKKCFAINDVGMFFLSQFSHSLRQINLSYCSVTDIG---------- 363

Query: 423 TLLNLSQNCNLTDKTLELISGLT 445
            LL+LS  C L + T+  ++G+T
Sbjct: 364 -LLSLSSICGLQNMTIVHLAGIT 385



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 123/271 (45%), Gaps = 40/271 (14%)

Query: 13  ELVYSRCLTEVSLEAFRDC--ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT 70
           ++  +R +T+VSL A      +L  L +      + + + +I  +   L  +D++ SD+ 
Sbjct: 148 DITCNRNITDVSLAAITSSCHSLISLRIESCSHFSSEGLRLIGKRCCHLEELDITDSDLD 207

Query: 71  DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAG 129
           D GL  L  CS L SL    C++ISD GL H+ +    L  +   R+  I+ +G+   A 
Sbjct: 208 DEGLKALSGCSKLSSLKIGICMRISDQGLIHIGKSCPELRDIDLYRSGGISDEGVTQIA- 266

Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
                                 +G   LES+N+ +C  ITD  +  LS    L +L+I  
Sbjct: 267 ----------------------QGCPMLESINLSYCTEITDVSLMSLSKCAKLNTLEIRG 304

Query: 189 CSKVTDSGIAYLK-GLQKLTLLNLEGC-PVTAACLDSLSALG-SLFYLNLNRCQLSDDGC 245
           C  ++ +G++ +  G + L  L+++ C  +    +  LS    SL  +NL+ C ++D G 
Sbjct: 305 CPSISSAGLSEIAIGCRLLAKLDVKKCFAINDVGMFFLSQFSHSLRQINLSYCSVTDIGL 364

Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
              S I  L+ +           +VHL G+T
Sbjct: 365 LSLSSICGLQNMT----------IVHLAGIT 385



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 117/399 (29%), Positives = 182/399 (45%), Gaps = 65/399 (16%)

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIH----GGLVNLKGLMKLESLNIKWCNCITDSDMK 174
           I+   + A   L NL  L L  C  I      GL N +    L  L++  C  +T + + 
Sbjct: 1   ISKDCLPAIMELPNLEVLALVGCVGIDDDALSGLEN-ESSKSLRVLDMSTCRNVTHTGVS 59

Query: 175 PL-SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---- 228
            +   L NL  L +S C  VT S     + L KL  L LEGC   A   D L  +G    
Sbjct: 60  SVVKALPNLLELNLSYCCNVTASMGKCFQMLPKLQTLKLEGCKFMA---DGLKHIGISCV 116

Query: 229 SLFYLNLNRCQLSDDGCEKF--SKIGSLKVLNLGFNE-ITDECLVHLKGLTN----LESL 281
           SL  L+L++C    D    F  S++ +L  L++  N  ITD   V L  +T+    L SL
Sbjct: 117 SLRELSLSKCSGVTDTDLSFVVSRLKNLLKLDITCNRNITD---VSLAAITSSCHSLISL 173

Query: 282 NLDSCG-IGDEGLVNLTG--LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT---- 334
            ++SC     EGL  L G   C+L+ L+++D+ +   GL+ LSG + L S+ +       
Sbjct: 174 RIESCSHFSSEGL-RLIGKRCCHLEELDITDSDLDDEGLKALSGCSKLSSLKIGICMRIS 232

Query: 335 -----------------------GISDGSLRKLA-GLSSLKSLNLD-ARQITDTGLAALT 369
                                  GISD  + ++A G   L+S+NL    +ITD  L +L+
Sbjct: 233 DQGLIHIGKSCPELRDIDLYRSGGISDEGVTQIAQGCPMLESINLSYCTEITDVSLMSLS 292

Query: 370 SLTGLTHLDLFG-ARITDSGAAYLR-NFKNLRSLEI--CGGGLTDAGVKHIKDLS-SLTL 424
               L  L++ G   I+ +G + +    + L  L++  C   + D G+  +   S SL  
Sbjct: 293 KCAKLNTLEIRGCPSISSAGLSEIAIGCRLLAKLDVKKC-FAINDVGMFFLSQFSHSLRQ 351

Query: 425 LNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGL 462
           +NLS  C++TD  L  +S + GL ++ + + + IT  GL
Sbjct: 352 INLSY-CSVTDIGLLSLSSICGLQNMTIVHLAGITPNGL 389


>gi|343413825|emb|CCD21196.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
          Length = 510

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 124/384 (32%), Positives = 183/384 (47%), Gaps = 52/384 (13%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           S+L++L  + C  I+D  +  L  LS+L +L       IT   +   + L +L  L L  
Sbjct: 20  SSLRTLGLSHCTGITD--VSPLSKLSSLRTLDLSHCTGIT--DVSPLSKLSSLHTLGLSH 75

Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAY 199
           CT I   +  L  L  L +L +  C  ITD  + PLS  ++L+ L +S C+ +TD  ++ 
Sbjct: 76  CTGI-TDVPPLSVLSSLRTLGLSHCTGITD--VSPLSVFSSLRMLYLSHCTGITD--VSP 130

Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
           L  L  L  L+L  C      +  LS L SL  L L+ C    D     SK+ SL  L+L
Sbjct: 131 LSKLSSLRTLDLSHC-TGITDVSPLSKLSSLHTLGLSHCTGITD-VSPLSKLSSLHTLDL 188

Query: 260 GF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
                ITD  +  L  L++L +L L  C GI D  +  L+ L +L+ L+LS    G + +
Sbjct: 189 SHCTGITD--VPPLSVLSSLRTLGLSHCTGITD--VSPLSVLSSLRMLDLSHCT-GITDV 243

Query: 318 RHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLT 375
             LS L++L ++ LS  TGI+D S   L+ LSSL  L L     ITD  ++ LT++ G  
Sbjct: 244 SPLSKLSSLRTLGLSHCTGITDVS--PLSKLSSLHILGLSHCTGITD--VSPLTTIIGFE 299

Query: 376 HLDLFGAR-ITD---------------------SGAAYLRNFKNLRSLEI--CGGGLTDA 411
            L L     ITD                     +  + L    +LR+L++  C G    A
Sbjct: 300 KLYLSNCTGITDVSPLSKLSSLRSLDLSHCTGITDVSPLSELSSLRTLDLSHCRG---IA 356

Query: 412 GVKHIKDLSSLTLLNLSQNCNLTD 435
            V  + +LSSL +LNLS    +TD
Sbjct: 357 NVSPLSNLSSLRMLNLSHCTGITD 380



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 136/475 (28%), Positives = 216/475 (45%), Gaps = 81/475 (17%)

Query: 32  ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
           +L+ L L    G+ D       S+ SSL ++DLS  + +TD  +  L   S+L +L  + 
Sbjct: 21  SLRTLGLSHCTGITDVSP---LSKLSSLRTLDLSHCTGITD--VSPLSKLSSLHTLGLSH 75

Query: 91  CIQISDG------------GLEHLRGLSNLTSLS-------FRRNNAITAQGMKAFAGLI 131
           C  I+D             GL H  G+++++ LS          ++      +   + L 
Sbjct: 76  CTGITDVPPLSVLSSLRTLGLSHCTGITDVSPLSVFSSLRMLYLSHCTGITDVSPLSKLS 135

Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLN-IKWCNCITDSDMKPLSGLTNLKSLQIS-C 189
           +L  LDL  CT    G+ ++  L KL SL+ +   +C   +D+ PLS L++L +L +S C
Sbjct: 136 SLRTLDLSHCT----GITDVSPLSKLSSLHTLGLSHCTGITDVSPLSKLSSLHTLDLSHC 191

Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
           + +TD  +  L  L  L  L L  C      +  LS L SL  L+L+ C    D     S
Sbjct: 192 TGITD--VPPLSVLSSLRTLGLSHC-TGITDVSPLSVLSSLRMLDLSHCTGITD-VSPLS 247

Query: 250 KIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL 307
           K+ SL+ L L     ITD  +  L  L++L  L L  C GI D  +  LT +   + L L
Sbjct: 248 KLSSLRTLGLSHCTGITD--VSPLSKLSSLHILGLSHCTGITD--VSPLTTIIGFEKLYL 303

Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
           S+    +         +         TGI+D S   L+ LSSL++L+L   +    G+A 
Sbjct: 304 SNCTGITDVSPLSKLSSLRSLDLSHCTGITDVS--PLSELSSLRTLDLSHCR----GIAN 357

Query: 368 LTSLTGLTHLDLFGAR----ITDSGAAYLRNFKNLRSLEI--CGG--------------- 406
           ++ L+ L+ L +        ITD   + L  F +LR+L++  C G               
Sbjct: 358 VSPLSNLSSLRMLNLSHCTGITD--VSPLSVFSSLRTLDLSHCTGITNVSPLSNLSSLRS 415

Query: 407 -------GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
                  G+TD  V  + +LSSL  LNLS    +TD  +  +S L+ L +L++S+
Sbjct: 416 LDLSHCTGITD--VSPLSELSSLEKLNLSHCTAITD--VSPLSELSSLHTLDLSH 466



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 113/382 (29%), Positives = 176/382 (46%), Gaps = 48/382 (12%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           S+L+ L  + C  I+D  +  L  LS+L +L       IT   +   + L +L  L L  
Sbjct: 112 SSLRMLYLSHCTGITD--VSPLSKLSSLRTLDLSHCTGIT--DVSPLSKLSSLHTLGLSH 167

Query: 141 CTRIHGGLVNLKGLMKLESLN-IKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIA 198
           CT    G+ ++  L KL SL+ +   +C   +D+ PLS L++L++L +S C+ +TD  ++
Sbjct: 168 CT----GITDVSPLSKLSSLHTLDLSHCTGITDVPPLSVLSSLRTLGLSHCTGITD--VS 221

Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
            L  L  L +L+L  C      +  LS L SL  L L+ C    D     SK+ SL +L 
Sbjct: 222 PLSVLSSLRMLDLSHC-TGITDVSPLSKLSSLRTLGLSHCTGITD-VSPLSKLSSLHILG 279

Query: 259 LGF-NEITDECLVHLKGLTNLESLNLDSC-GIGD------------------EGLVN--- 295
           L     ITD  +  L  +   E L L +C GI D                   G+ +   
Sbjct: 280 LSHCTGITD--VSPLTTIIGFEKLYLSNCTGITDVSPLSKLSSLRSLDLSHCTGITDVSP 337

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLN 354
           L+ L +L+ L+LS  + G + +  LS L++L  +NLS  TGI+D S   L+  SSL++L+
Sbjct: 338 LSELSSLRTLDLSHCR-GIANVSPLSNLSSLRMLNLSHCTGITDVS--PLSVFSSLRTLD 394

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGV 413
           L                +  +        ITD   + L    +L  L +     +TD  V
Sbjct: 395 LSHCTGITNVSPLSNLSSLRSLDLSHCTGITD--VSPLSELSSLEKLNLSHCTAITD--V 450

Query: 414 KHIKDLSSLTLLNLSQNCNLTD 435
             + +LSSL  L+LS    +TD
Sbjct: 451 SPLSELSSLHTLDLSHCTGITD 472



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 149/343 (43%), Gaps = 81/343 (23%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           S+L +LD + C  I+D  +  L  LS+L +L       IT   +   + L +L  LDL  
Sbjct: 181 SSLHTLDLSHCTGITD--VPPLSVLSSLRTLGLSHCTGIT--DVSPLSVLSSLRMLDLSH 236

Query: 141 CTRIHGGLVNLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD-SGI 197
           CT    G+ ++  L KL SL  +   +C   +D+ PLS L++L  L +S C+ +TD S +
Sbjct: 237 CT----GITDVSPLSKLSSLRTLGLSHCTGITDVSPLSKLSSLHILGLSHCTGITDVSPL 292

Query: 198 AYLKGLQKLTLLNLEGCP--------------VTAAC-----LDSLSALGSLFYLNLNRC 238
             + G +KL L N  G                  + C     +  LS L SL  L+L+ C
Sbjct: 293 TTIIGFEKLYLSNCTGITDVSPLSKLSSLRSLDLSHCTGITDVSPLSELSSLRTLDLSHC 352

Query: 239 QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGD------ 290
           +         S + SL++LNL     ITD  +  L   ++L +L+L  C GI +      
Sbjct: 353 R-GIANVSPLSNLSSLRMLNLSHCTGITD--VSPLSVFSSLRTLDLSHCTGITNVSPLSN 409

Query: 291 ------------EGLVNLTGLCNLKCLE---------LSDTQVGSS-------GLRHLSG 322
                        G+ +++ L  L  LE         ++D    S         L H +G
Sbjct: 410 LSSLRSLDLSHCTGITDVSPLSELSSLEKLNLSHCTAITDVSPLSELSSLHTLDLSHCTG 469

Query: 323 LTNLESIN----------LSFTGISDGSLRKLAGLSSLKSLNL 355
           +T++  ++          L  TGI+D S   L+ LSSL +L+ 
Sbjct: 470 ITDVSPLSKLSSLRTLDLLHCTGITDVS--PLSELSSLGTLDF 510


>gi|290979178|ref|XP_002672311.1| predicted protein [Naegleria gruberi]
 gi|284085887|gb|EFC39567.1| predicted protein [Naegleria gruberi]
          Length = 347

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 117/253 (46%), Gaps = 23/253 (9%)

Query: 239 QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLE------------------ 279
           +L+D+  + F K+  L  L + +  EI  + +V LK LT L                   
Sbjct: 84  KLNDEWFDVFEKMNQLTELQIDWVREIDLKRIVDLKQLTKLSVCSCTEDVEQVKLIGEMK 143

Query: 280 ---SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
               L + S   GDEG   + G+  L  LE+   ++G  G + L  L  L+ + +S   +
Sbjct: 144 QLTELKISSNKFGDEGAKIIGGMTQLTKLEIKSNRIGKLGAKALCNLKELKELRISENAL 203

Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
                + ++ L  L +L +D  Q+   G  A++ +  LT+L +   +I  +GA  +   K
Sbjct: 204 GASGAKSISQLKQLTTLTIDYNQLGPEGAKAISEIPNLTNLSICSDQIGAAGAKSISKMK 263

Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
            L +L   G  + D G K I ++  LT L+LS N ++  +  + IS L  L  LN++ + 
Sbjct: 264 QLLTLSADGNAIGDKGAKAIGEMKQLTSLHLSFN-HIGFEGAKAISELKNLRYLNMTTNP 322

Query: 457 ITSAGLRHLNHAR 469
           ++S G + L + +
Sbjct: 323 LSSEGAQLLQNMK 335



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 143/333 (42%), Gaps = 42/333 (12%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSDVT---DSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
           ++ +W++VI  +  S LS   S   V    + G +H         + F    +++D   +
Sbjct: 39  ISKQWLEVIKQR--SKLSACFSNPKVNRVMEKGFLHY-----FVKIKFKSVYKLNDEWFD 91

Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK-LDLERCTRIHGGLVNLKGLMKLES 159
               ++ LT L                   I+ V+ +DL+R       +V+LK L KL  
Sbjct: 92  VFEKMNQLTELQ------------------IDWVREIDLKR-------IVDLKQLTKLSV 126

Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
                C+C  D +   L G +  L  L+IS +K  D G   + G+ +LT L ++   +  
Sbjct: 127 -----CSCTEDVEQVKLIGEMKQLTELKISSNKFGDEGAKIIGGMTQLTKLEIKSNRIGK 181

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
               +L  L  L  L ++   L   G +  S++  L  L + +N++  E    +  + NL
Sbjct: 182 LGAKALCNLKELKELRISENALGASGAKSISQLKQLTTLTIDYNQLGPEGAKAISEIPNL 241

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
            +L++ S  IG  G  +++ +  L  L      +G  G + +  +  L S++LSF  I  
Sbjct: 242 TNLSICSDQIGAAGAKSISKMKQLLTLSADGNAIGDKGAKAIGEMKQLTSLHLSFNHIGF 301

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
              + ++ L +L+ LN+    ++  G   L ++
Sbjct: 302 EGAKAISELKNLRYLNMTTNPLSSEGAQLLQNM 334



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 114/246 (46%), Gaps = 8/246 (3%)

Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
           S  K+ D      + + +LT L ++   V    L  +  L  L  L++  C  ++D  E+
Sbjct: 81  SVYKLNDEWFDVFEKMNQLTELQIDW--VREIDLKRIVDLKQLTKLSV--CSCTED-VEQ 135

Query: 248 FSKIGSLKVL---NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
              IG +K L    +  N+  DE    + G+T L  L + S  IG  G   L  L  LK 
Sbjct: 136 VKLIGEMKQLTELKISSNKFGDEGAKIIGGMTQLTKLEIKSNRIGKLGAKALCNLKELKE 195

Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
           L +S+  +G+SG + +S L  L ++ + +  +     + ++ + +L +L++ + QI   G
Sbjct: 196 LRISENALGASGAKSISQLKQLTTLTIDYNQLGPEGAKAISEIPNLTNLSICSDQIGAAG 255

Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
             +++ +  L  L   G  I D GA  +   K L SL +    +   G K I +L +L  
Sbjct: 256 AKSISKMKQLLTLSADGNAIGDKGAKAIGEMKQLTSLHLSFNHIGFEGAKAISELKNLRY 315

Query: 425 LNLSQN 430
           LN++ N
Sbjct: 316 LNMTTN 321


>gi|312385235|gb|EFR29787.1| hypothetical protein AND_01026 [Anopheles darlingi]
          Length = 627

 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 147/333 (44%), Gaps = 38/333 (11%)

Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTRIHGG-LVNLKGLMKLESL 160
           GL  L ++   RNN IT   M+ F G  NL++LDL R    R+  G   +LK L  L  +
Sbjct: 130 GLVRLKTIDLSRNN-ITQLSMENFRGQDNLLELDLSRNRLERVASGTFAHLKELKTLHMI 188

Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
           +    + I + + +    L  LK L +S + + D      K +Q L    + GC ++   
Sbjct: 189 D----SSINELNTRLFLHLAKLKYLDLSMNSIEDLAPEVFKDVQDLKTFKVRGCRLSNVN 244

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTN 277
               + L  L  L+L + Q      E+F  +  L+ L L  N+   I DE  +H KGLT 
Sbjct: 245 PQIYNILSHLTELDLGQNQFKFLDKEEFKDLRHLRKLRLDGNQLSVIVDELFLHQKGLTF 304

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           L+        I D    NL    NL  L++S  ++       L  L NL+++N+S     
Sbjct: 305 LDISRNRLAKIADRAFENLV---NLTFLDVSYNKLSHIEPVCLRPLRNLQTLNIS----- 356

Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
            G+L     L+ ++      + I+   +A L SL     L+LF              FK 
Sbjct: 357 -GNL--ALDLTEMEDTIQTVKDISSLVIADLGSLP----LNLFTP------------FKR 397

Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           L +L + G  + +  ++ I+ L+ L  L+LS+N
Sbjct: 398 LTALNLSGNHIDNITIQIIEPLAQLEFLDLSRN 430



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 115/277 (41%), Gaps = 10/277 (3%)

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
             NL+ L++  S V   G     GL +L  ++L    +T   +++     +L  L+L+R 
Sbjct: 107 FKNLEILRVVESNVPSIGDRSFWGLVRLKTIDLSRNNITQLSMENFRGQDNLLELDLSRN 166

Query: 239 QLSDDGCEKFSKIGSLKVLNL---GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           +L       F+ +  LK L++     NE+     +HL     L+ L+L    I D     
Sbjct: 167 RLERVASGTFAHLKELKTLHMIDSSINELNTRLFLHL---AKLKYLDLSMNSIEDLAPEV 223

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
              + +LK  ++   ++ +   +  + L++L  ++L           +   L  L+ L L
Sbjct: 224 FKDVQDLKTFKVRGCRLSNVNPQIYNILSHLTELDLGQNQFKFLDKEEFKDLRHLRKLRL 283

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
           D  Q++           GLT LD+   R+         N  NL  L++    L+      
Sbjct: 284 DGNQLSVIVDELFLHQKGLTFLDISRNRLAKIADRAFENLVNLTFLDVSYNKLSHIEPVC 343

Query: 416 IKDLSSLTLLNLSQNCNL----TDKTLELISGLTGLV 448
           ++ L +L  LN+S N  L     + T++ +  ++ LV
Sbjct: 344 LRPLRNLQTLNISGNLALDLTEMEDTIQTVKDISSLV 380



 Score = 42.7 bits (99), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 85/219 (38%), Gaps = 10/219 (4%)

Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
           F  +  L+V+      I D       GL  L++++L    I    + N  G  NL  L+L
Sbjct: 107 FKNLEILRVVESNVPSIGDRSFW---GLVRLKTIDLSRNNITQLSMENFRGQDNLLELDL 163

Query: 308 SDT---QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
           S     +V S    HL  L  L  I+   + I++ + R    L+ LK L+L    I D  
Sbjct: 164 SRNRLERVASGTFAHLKELKTLHMID---SSINELNTRLFLHLAKLKYLDLSMNSIEDLA 220

Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
                 +  L    + G R+++          +L  L++          +  KDL  L  
Sbjct: 221 PEVFKDVQDLKTFKVRGCRLSNVNPQIYNILSHLTELDLGQNQFKFLDKEEFKDLRHLRK 280

Query: 425 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
           L L  N  L+    EL     GL  L++S +R+     R
Sbjct: 281 LRLDGN-QLSVIVDELFLHQKGLTFLDISRNRLAKIADR 318



 Score = 41.6 bits (96), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 110/252 (43%), Gaps = 27/252 (10%)

Query: 20  LTEVSLEAFRDCALQDLCLGQYPG-----VNDKWMDVIASQGSSLLSVDLSGSDVTDSGL 74
           + +++ E F+D  +QDL   +  G     VN +  +++    S L  +DL  +       
Sbjct: 216 IEDLAPEVFKD--VQDLKTFKVRGCRLSNVNPQIYNIL----SHLTELDLGQNQFKFLDK 269

Query: 75  IHLKDCSNLQSL--DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
              KD  +L+ L  D N    I D    H +GL   T L   RN  +     +AF  L+N
Sbjct: 270 EEFKDLRHLRKLRLDGNQLSVIVDELFLHQKGL---TFLDISRNR-LAKIADRAFENLVN 325

Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
           L  LD+      H   V L+ L  L++LNI     +  ++M+    +  +K   IS   +
Sbjct: 326 LTFLDVSYNKLSHIEPVCLRPLRNLQTLNISGNLALDLTEME--DTIQTVKD--ISSLVI 381

Query: 193 TDSG---IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL---SDDGCE 246
            D G   +      ++LT LNL G  +    +  +  L  L +L+L+R QL    +    
Sbjct: 382 ADLGSLPLNLFTPFKRLTALNLSGNHIDNITIQIIEPLAQLEFLDLSRNQLNGIPERYAA 441

Query: 247 KFSKIGSLKVLN 258
           + S+I  +K+ N
Sbjct: 442 QLSRIADVKLEN 453


>gi|406832462|ref|ZP_11092056.1| ribonuclease inhibitor [Schlesneria paludicola DSM 18645]
          Length = 306

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 85/191 (44%), Gaps = 8/191 (4%)

Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS--CGIGDEGLVNLT 297
           L+ DGC + + +  L  L L      DE L  L  LT L  L+++   CG    G     
Sbjct: 92  LTQDGCRRLASLTKLISLRLAVP--NDEALSDLAALTELGDLSVEGNICG---RGFHRFP 146

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL-AGLSSLKSLNLD 356
               L  L ++  +  S  +R ++    +  +  S+T I+D  LR L   ++ L      
Sbjct: 147 ETSELHSLRIASAKNISDEIRSINTFRGIRRLVFSYTPITDNHLRALRPTVARLFGFEAY 206

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
             +ITD G+     L  L  L L GA ITD+G   +R    LR L +    LTD  +KH+
Sbjct: 207 GSEITDDGVREFQDLPELERLSLVGAHITDTGVMAMRQLPKLRELTLVDNELTDNCIKHL 266

Query: 417 KDLSSLTLLNL 427
           K  S L  ++L
Sbjct: 267 KQFSQLRHVSL 277



 Score = 41.6 bits (96), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 88/220 (40%), Gaps = 29/220 (13%)

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           +T  G +  A L  L+ L L         L +L  L +L  L+++   C       P + 
Sbjct: 92  LTQDGCRRLASLTKLISLRL--AVPNDEALSDLAALTELGDLSVEGNICGRGFHRFPET- 148

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNR 237
            + L SL+I+ +K     I  +   + +  L     P+T   L +L   +  LF      
Sbjct: 149 -SELHSLRIASAKNISDEIRSINTFRGIRRLVFSYTPITDNHLRALRPTVARLFGFEAYG 207

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
            +++DDG  +F                        + L  LE L+L    I D G++ + 
Sbjct: 208 SEITDDGVREF------------------------QDLPELERLSLVGAHITDTGVMAMR 243

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
            L  L+ L L D ++  + ++HL   + L  ++L  T +S
Sbjct: 244 QLPKLRELTLVDNELTDNCIKHLKQFSQLRHVSLCKTKVS 283


>gi|302802011|ref|XP_002982761.1| hypothetical protein SELMODRAFT_52320 [Selaginella moellendorffii]
 gi|300149351|gb|EFJ16006.1| hypothetical protein SELMODRAFT_52320 [Selaginella moellendorffii]
          Length = 516

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 139/492 (28%), Positives = 214/492 (43%), Gaps = 65/492 (13%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIAS-QGSSL 59
           +LP  +++ + ++L+     +   LE F+  ++++L L     V+ +WM  I   +   +
Sbjct: 28  ILPAHLAESLLHQLLVKNLFSPPLLELFQ-LSVEELDLNGELSVDAEWMAYIGGFRHLRV 86

Query: 60  LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNF-------CIQISDGGLEHLRGLSNLTSLS 112
           L V+ S   + +S + HL        L F+F       C +I++ GLEH+  L  L  L 
Sbjct: 87  LKVE-SCKALNNSAIWHLSG-----KLHFSFERKLIDRCSKITNQGLEHILTLGKLKHLG 140

Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL------VNLKGLMKLESLNIKWCN 166
                 I  QG+   A L NL  LDL       GGL      V+   +++L      W +
Sbjct: 141 LS-ETGIGEQGIGKLAVLRNLSHLDL-------GGLPVTDSHVSSLLVLQLLIDLQLWGS 192

Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
            IT+     L G   L+ L ++ +KV+      +  + +++ LNL  C V      S+S 
Sbjct: 193 SITNEGANMLRGFPRLEILNLAWTKVS-----VVPSMPRVSQLNLSHCVVL-----SVSE 242

Query: 227 LGS-LFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
            GS L  L L+   + D      S  +  L VL L    +    L  L  L  +  L+L 
Sbjct: 243 EGSALDQLRLSGATIQDPLRVLHSHSLPELSVLELSATNLA--ALTFLGSLKRVVKLDLS 300

Query: 285 SCGIGDEGLVNLTGLC--NLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSL 341
           S        +NL   C  NLK L+LSDT+VGS G+  L+G +  LE ++L  T I+D   
Sbjct: 301 SMPSVSSDTMNLLAKCARNLKHLDLSDTRVGSEGVAVLTGHVPALEHLSLRGTSITDSVF 360

Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT----DSG---AAYLRN 394
             L  +  L  ++L             TSLTG+   +      T    DS      +L+ 
Sbjct: 361 GYLGLMPLLIDIDLSN-----------TSLTGMPVFEFTKVYYTCAPVDSSFWSVLHLQQ 409

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
             NLR L++     +D   K +  L  LT L L     LTD +L  +S L  L SL    
Sbjct: 410 LHNLRRLDLRRTRFSDKSCKRLACLVRLTHLLLCAEF-LTDASLHELSALPNLRSLAFQG 468

Query: 455 SRITSAGLRHLN 466
           + +T AGLR L 
Sbjct: 469 TVLTDAGLRSLK 480


>gi|290975580|ref|XP_002670520.1| predicted protein [Naegleria gruberi]
 gi|284084080|gb|EFC37776.1| predicted protein [Naegleria gruberi]
          Length = 265

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 108/222 (48%), Gaps = 2/222 (0%)

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLN 282
           +  L +L  L +    L  +G +  S++  L +L++  N I DE +  + + +  L +L+
Sbjct: 22  IGGLKNLITLQIYENHLGPNGAKSISELKQLTILDISHNRIRDEGVKSISEKMDQLTNLD 81

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
           +   GI ++GLV L  + NLK L   D Q+ +     +S +  +  +++S+   ++  L+
Sbjct: 82  ISFVGISEKGLVPLVEMKNLKILAFYDCQLSTKQAETISKMKQITELDISYNLTNNEILK 141

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
            +  +  L  L L    IT   +  ++ L  LT L++    I + G  Y+   K L  L+
Sbjct: 142 SIGEMKQLIKLYLVKNGITSHQVEIISQLKQLTVLNISENEIRNEGVVYISGLKQLTELD 201

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
           I   G+   GV  I  ++ LT L++  N  + ++ L ++ G+
Sbjct: 202 ISNNGIGYEGVLSICKMTQLTKLSIYNNP-IPEEALRILDGM 242



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 119/246 (48%), Gaps = 6/246 (2%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           +I DGG   + GL NL +L    N+ +   G K+ + L  L  LD+        G+ ++ 
Sbjct: 13  RIGDGGAMLIGGLKNLITLQIYENH-LGPNGAKSISELKQLTILDISHNRIRDEGVKSIS 71

Query: 153 GLM-KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
             M +L +L+I +   I++  + PL  + NLK L     +++      +  ++++T L++
Sbjct: 72  EKMDQLTNLDISFVG-ISEKGLVPLVEMKNLKILAFYDCQLSTKQAETISKMKQITELDI 130

Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
                    L S+  +  L  L L +  ++    E  S++  L VLN+  NEI +E +V+
Sbjct: 131 SYNLTNNEILKSIGEMKQLIKLYLVKNGITSHQVEIISQLKQLTVLNISENEIRNEGVVY 190

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
           + GL  L  L++ + GIG EG++++  +  L  L + +  +    LR L G+     +  
Sbjct: 191 ISGLKQLTELDISNNGIGYEGVLSICKMTQLTKLSIYNNPIPEEALRILDGMKQFRQL-- 248

Query: 332 SFTGIS 337
             TGIS
Sbjct: 249 -VTGIS 253



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 105/211 (49%), Gaps = 2/211 (0%)

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
            L  L++  N I D   + + GL NL +L +    +G  G  +++ L  L  L++S  ++
Sbjct: 3   QLTALDISSNRIGDGGAMLIGGLKNLITLQIYENHLGPNGAKSISELKQLTILDISHNRI 62

Query: 313 GSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
              G++ +S  +  L ++++SF GIS+  L  L  + +LK L     Q++      ++ +
Sbjct: 63  RDEGVKSISEKMDQLTNLDISFVGISEKGLVPLVEMKNLKILAFYDCQLSTKQAETISKM 122

Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
             +T LD+      +     +   K L  L +   G+T   V+ I  L  LT+LN+S+N 
Sbjct: 123 KQITELDISYNLTNNEILKSIGEMKQLIKLYLVKNGITSHQVEIISQLKQLTVLNISEN- 181

Query: 432 NLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
            + ++ +  ISGL  L  L++SN+ I   G+
Sbjct: 182 EIRNEGVVYISGLKQLTELDISNNGIGYEGV 212



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 97/192 (50%), Gaps = 2/192 (1%)

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           +  L +L++ S  IGD G + + GL NL  L++ +  +G +G + +S L  L  +++S  
Sbjct: 1   MKQLTALDISSNRIGDGGAMLIGGLKNLITLQIYENHLGPNGAKSISELKQLTILDISHN 60

Query: 335 GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
            I D  ++ ++  +  L +L++    I++ GL  L  +  L  L  +  +++   A  + 
Sbjct: 61  RIRDEGVKSISEKMDQLTNLDISFVGISEKGLVPLVEMKNLKILAFYDCQLSTKQAETIS 120

Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
             K +  L+I      +  +K I ++  L  L L +N  +T   +E+IS L  L  LN+S
Sbjct: 121 KMKQITELDISYNLTNNEILKSIGEMKQLIKLYLVKN-GITSHQVEIISQLKQLTVLNIS 179

Query: 454 NSRITSAGLRHL 465
            + I + G+ ++
Sbjct: 180 ENEIRNEGVVYI 191



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 112/257 (43%), Gaps = 26/257 (10%)

Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQ 204
           GG + + GL  L +L I + N +  +  K +S L  L  L IS +++ D G+  + + + 
Sbjct: 17  GGAMLIGGLKNLITLQI-YENHLGPNGAKSISELKQLTILDISHNRIRDEGVKSISEKMD 75

Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
           +LT L++    ++   L  L  + +L  L    CQLS    E  SK+  +  L++ +N  
Sbjct: 76  QLTNLDISFVGISEKGLVPLVEMKNLKILAFYDCQLSTKQAETISKMKQITELDISYNLT 135

Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
            +E L  +  +  L  L L   GI    +  ++ L  L  L +S+ ++ + G+ ++SGL 
Sbjct: 136 NNEILKSIGEMKQLIKLYLVKNGITSHQVEIISQLKQLTVLNISENEIRNEGVVYISGLK 195

Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
            L  +++S  GI                           G+ ++  +T LT L ++   I
Sbjct: 196 QLTELDISNNGIGY------------------------EGVLSICKMTQLTKLSIYNNPI 231

Query: 385 TDSGAAYLRNFKNLRSL 401
            +     L   K  R L
Sbjct: 232 PEEALRILDGMKQFRQL 248



 Score = 45.4 bits (106), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 96/217 (44%), Gaps = 39/217 (17%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
           + D+ +  I+ +   L ++D+S   +++ GL+ L +  NL+ L F  C Q+S    E + 
Sbjct: 62  IRDEGVKSISEKMDQLTNLDISFVGISEKGLVPLVEMKNLKILAFYDC-QLSTKQAETIS 120

Query: 104 GLSNLTSLSFRR---NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
            +  +T L       NN I    +K+   +  L+KL L +                    
Sbjct: 121 KMKQITELDISYNLTNNEI----LKSIGEMKQLIKLYLVK-------------------- 156

Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
                N IT   ++ +S L  L  L IS +++ + G+ Y+ GL++LT L++    +    
Sbjct: 157 -----NGITSHQVEIISQLKQLTVLNISENEIRNEGVVYISGLKQLTELDISNNGIGYEG 211

Query: 221 LDSLSALGSLFYLNLNRCQLSD------DGCEKFSKI 251
           + S+  +  L  L++    + +      DG ++F ++
Sbjct: 212 VLSICKMTQLTKLSIYNNPIPEEALRILDGMKQFRQL 248


>gi|290974240|ref|XP_002669854.1| predicted protein [Naegleria gruberi]
 gi|284083406|gb|EFC37110.1| predicted protein [Naegleria gruberi]
          Length = 357

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 109/246 (44%), Gaps = 22/246 (8%)

Query: 189 CSKVTDSGIAYLK-----GLQKLTLLNLEGCPVTA--ACLDSLSALG------------- 228
           C    +  + YL       L++L L+ LE   V A    L+SLS +G             
Sbjct: 89  CPYSFEEFVKYLDECQFDSLKRLNLIGLEVSNVVARFGSLESLSLIGMGAEIGNSIGNLS 148

Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
            L YLNLN   ++ + C+   K   +K LNL  N+I +E  ++L  L NL  L L+ C I
Sbjct: 149 RLTYLNLNASSVTSESCQYIQKCELIKNLNLSDNKIGNESCLYLTKLKNLTILRLEDCNI 208

Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
            ++G+ +L+ +  L  L +S  ++   G  ++  L NL S  L     S  S++ +  L 
Sbjct: 209 SEKGVEHLSQIETLTILNVSKNRIEDDGFVNICKLKNLTS--LKAASCSVESIKNITNLI 266

Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
            L SLNL    I + G+  +  LT L  L L           YL    ++  L++    L
Sbjct: 267 KLTSLNLGQNSIDNEGVKIIGELTNLKTLTLENNVFQPEAVQYLTKLSSMEVLDLRDNNL 326

Query: 409 TDAGVK 414
           +   VK
Sbjct: 327 SFDNVK 332



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 104/209 (49%), Gaps = 6/209 (2%)

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV-TAACLDSLSALGSLFYLN 234
           +  L+ L  L ++ S VT     Y++  + +  LNL    +   +CL  L+ L +L  L 
Sbjct: 144 IGNLSRLTYLNLNASSVTSESCQYIQKCELIKNLNLSDNKIGNESCL-YLTKLKNLTILR 202

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           L  C +S+ G E  S+I +L +LN+  N I D+  V++  L NL SL   SC +  E + 
Sbjct: 203 LEDCNISEKGVEHLSQIETLTILNVSKNRIEDDGFVNICKLKNLTSLKAASCSV--ESIK 260

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
           N+T L  L  L L    + + G++ +  LTNL+++ L        +++ L  LSS++ L+
Sbjct: 261 NITNLIKLTSLNLGQNSIDNEGVKIIGELTNLKTLTLENNVFQPEAVQYLTKLSSMEVLD 320

Query: 355 LDARQITDTGLAAL--TSLTGLTHLDLFG 381
           L    ++   +  L  T+L  L  + +  
Sbjct: 321 LRDNNLSFDNVKCLNATNLPKLYQIQIIS 349



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 5/151 (3%)

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           +++LS + + +   ++L    NL  L    C  IS+ G+EHL  +  LT L+  + N I 
Sbjct: 176 NLNLSDNKIGNESCLYLTKLKNLTILRLEDC-NISEKGVEHLSQIETLTILNVSK-NRIE 233

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
             G      L NL  L    C+     + N+  L+KL SLN+   N I +  +K +  LT
Sbjct: 234 DDGFVNICKLKNLTSLKAASCSV--ESIKNITNLIKLTSLNLGQ-NSIDNEGVKIIGELT 290

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
           NLK+L +  +      + YL  L  + +L+L
Sbjct: 291 NLKTLTLENNVFQPEAVQYLTKLSSMEVLDL 321



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 22/198 (11%)

Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
           NE   +C    +         LD C       +NL GL      E+S+          ++
Sbjct: 83  NEFVSDCPYSFEEFVKY----LDECQFDSLKRLNLIGL------EVSNV---------VA 123

Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
              +LES++L   G   G+   +  LS L  LNL+A  +T      +     + +L+L  
Sbjct: 124 RFGSLESLSLIGMGAEIGN--SIGNLSRLTYLNLNASSVTSESCQYIQKCELIKNLNLSD 181

Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
            +I +    YL   KNL  L +    +++ GV+H+  + +LT+LN+S+N  + D     I
Sbjct: 182 NKIGNESCLYLTKLKNLTILRLEDCNISEKGVEHLSQIETLTILNVSKN-RIEDDGFVNI 240

Query: 442 SGLTGLVSLNVSNSRITS 459
             L  L SL  ++  + S
Sbjct: 241 CKLKNLTSLKAASCSVES 258


>gi|83749483|ref|ZP_00946473.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
 gi|83723837|gb|EAP71025.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
          Length = 546

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 131/282 (46%), Gaps = 2/282 (0%)

Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
           +L  S + V   G+  L   + LT L+L    +  A    L A   L  LN+NR ++   
Sbjct: 230 TLNASRNGVGGEGVRALVDCKTLTSLDLSENGLGDAEAQRLGASERLTTLNVNRNRIDVQ 289

Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
           G    +   +L  L++G N I D  +  L     L +LN++   +G  G+  L     L 
Sbjct: 290 GARALADCKTLTSLDIGGNSIGDAGVEALLANAQLTTLNVERAAVGAHGVRALADSKTLT 349

Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
            L + D  +G  G + L+  T+L +++    GI     + LA  + L +LNL    I D 
Sbjct: 350 SLRI-DNNIGDEGAKTLAASTSLTTLHSESNGIGLAGAKALAANTRLTTLNLGHNGIGDA 408

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
           G  A  + T L  L +    ++D+GA  L   K L +L+     + DAG + +    +LT
Sbjct: 409 GAQAWLANTTLVSLSVRRNGLSDAGATRLAASKTLTTLDAGDNAIKDAGARALAANRTLT 468

Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
            L++S N  + +     ++  T L SL++ N+R+  AG+R L
Sbjct: 469 TLDVSSN-EIGNAGARALAANTRLASLDLRNNRMLEAGVRAL 509



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 124/266 (46%), Gaps = 1/266 (0%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N + D++ + L     L +L ++ +++   G   L   + LT L++ G  +  A +++L 
Sbjct: 260 NGLGDAEAQRLGASERLTTLNVNRNRIDVQGARALADCKTLTSLDIGGNSIGDAGVEALL 319

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
           A   L  LN+ R  +   G    +   +L  L +  N I DE    L   T+L +L+ +S
Sbjct: 320 ANAQLTTLNVERAAVGAHGVRALADSKTLTSLRID-NNIGDEGAKTLAASTSLTTLHSES 378

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
            GIG  G   L     L  L L    +G +G +     T L S+++   G+SD    +LA
Sbjct: 379 NGIGLAGAKALAANTRLTTLNLGHNGIGDAGAQAWLANTTLVSLSVRRNGLSDAGATRLA 438

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
              +L +L+     I D G  AL +   LT LD+    I ++GA  L     L SL++  
Sbjct: 439 ASKTLTTLDAGDNAIKDAGARALAANRTLTTLDVSSNEIGNAGARALAANTRLASLDLRN 498

Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNC 431
             + +AGV+ +    +L+ L +S NC
Sbjct: 499 NRMLEAGVRALLVNRTLSSLGVSFNC 524


>gi|357511815|ref|XP_003626196.1| F-box/LRR-repeat protein [Medicago truncatula]
 gi|355501211|gb|AES82414.1| F-box/LRR-repeat protein [Medicago truncatula]
          Length = 623

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 120/417 (28%), Positives = 198/417 (47%), Gaps = 57/417 (13%)

Query: 69  VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLS---NLTSLSFRRNNAITAQGM 124
           VTD GL  +   CS L+ L   +C++ISD G++ L       N   +S+ +   +T + +
Sbjct: 197 VTDIGLAKIAVGCSKLEKLSLKWCLEISDLGIDLLSKKCFDLNFLDVSYLK---VTNESL 253

Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNL-KGLMKLESLNIKWCNCITDSD-MKPLSGLTN 181
           ++ A L+ L    +  C  +   GL  L KG   L+++++  CNC++ S  +  +SG   
Sbjct: 254 RSIASLLKLEVFIMVGCYLVDDAGLQFLEKGCPLLKAIDVSRCNCVSPSGLLSVISGHEG 313

Query: 182 LKSLQI-SC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRC 238
           L+ +    C S+++      LK L+ L+++ ++G  V+   L  + S   SL  L L++C
Sbjct: 314 LEQINAGHCLSELSAPLTNGLKNLKHLSVIRIDGVRVSDFILQIIGSNCKSLVELGLSKC 373

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT 297
                       IG   V N+G  ++         G  NL +L+L  C  + D  +  + 
Sbjct: 374 ------------IG---VTNMGIMQVV--------GCCNLTTLDLTCCRFVTDAAISTIA 410

Query: 298 GLC-NLKCLEL-SDTQVGSSGLRHL-SGLTNLESINLS-FTGISDGSLRKLAGLSSLKSL 353
             C NL CL+L S   V   GL  + S    LE ++L+  +G++D +L+ L+  S L  L
Sbjct: 411 NSCPNLACLKLESCDMVTEIGLYQIGSSCLMLEELDLTDCSGVNDIALKYLSRCSKLVRL 470

Query: 354 NLD-ARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKN---LRSLEICGGG 407
            L     I+D GLA +  +   LT LDL+   RI D G A L    N   + +L  C   
Sbjct: 471 KLGLCTNISDIGLAHIACNCPKLTELDLYRCVRIGDDGLAALTTGCNKLAMLNLAYC-NR 529

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
           +TDAG+K I +L  L+   L    N+T           G+ ++ VS  R+ +  L+H
Sbjct: 530 ITDAGLKCISNLGELSDFELRGLSNITS---------IGIKAVAVSCKRLANLDLKH 577



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 85/178 (47%), Gaps = 7/178 (3%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEH 101
           V D  +  IA+   +L  + L   D VT+ GL  +   C  L+ LD   C  ++D  L++
Sbjct: 401 VTDAAISTIANSCPNLACLKLESCDMVTEIGLYQIGSSCLMLEELDLTDCSGVNDIALKY 460

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNLK-GLMKLE 158
           L   S L  L       I+  G+   A     L +LDL RC RI   GL  L  G  KL 
Sbjct: 461 LSRCSKLVRLKLGLCTNISDIGLAHIACNCPKLTELDLYRCVRIGDDGLAALTTGCNKLA 520

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGI-AYLKGLQKLTLLNLEGC 214
            LN+ +CN ITD+ +K +S L  L   ++   S +T  GI A     ++L  L+L+ C
Sbjct: 521 MLNLAYCNRITDAGLKCISNLGELSDFELRGLSNITSIGIKAVAVSCKRLANLDLKHC 578



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 172/413 (41%), Gaps = 57/413 (13%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
           L+ L L     ++D  +D+++ +   L  +D+S   VT+  L  +     L+      C 
Sbjct: 212 LEKLSLKWCLEISDLGIDLLSKKCFDLNFLDVSYLKVTNESLRSIASLLKLEVFIMVGCY 271

Query: 93  QISDGGLEHL-RGLSNLTSLSFRRNNAITAQG-MKAFAGLINLVKLDLERC-----TRIH 145
            + D GL+ L +G   L ++   R N ++  G +   +G   L +++   C       + 
Sbjct: 272 LVDDAGLQFLEKGCPLLKAIDVSRCNCVSPSGLLSVISGHEGLEQINAGHCLSELSAPLT 331

Query: 146 GGLVNLKGL----------------------MKLESLNIKWCNCITDSDMKPLSGLTNLK 183
            GL NLK L                        L  L +  C  +T+  +  + G  NL 
Sbjct: 332 NGLKNLKHLSVIRIDGVRVSDFILQIIGSNCKSLVELGLSKCIGVTNMGIMQVVGCCNLT 391

Query: 184 SLQISCSK-VTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNR 237
           +L ++C + VTD+ I+ +      L  L LE C +       L  +GS    L  L+L  
Sbjct: 392 TLDLTCCRFVTDAAISTIANSCPNLACLKLESCDMVTEI--GLYQIGSSCLMLEELDLTD 449

Query: 238 CQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK-GLTNLESLNLDSC-GIGDEGL 293
           C  ++D   +  S+   L  L LG    I+D  L H+      L  L+L  C  IGD+GL
Sbjct: 450 CSGVNDIALKYLSRCSKLVRLKLGLCTNISDIGLAHIACNCPKLTELDLYRCVRIGDDGL 509

Query: 294 VNLTGLCN-LKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSL 350
             LT  CN L  L L+   ++  +GL+ +S L  L    L   + I+   ++ +A +S  
Sbjct: 510 AALTTGCNKLAMLNLAYCNRITDAGLKCISNLGELSDFELRGLSNITSIGIKAVA-VSCK 568

Query: 351 KSLNLDAR---QITDTGLAAL---------TSLTGLTHLDLFGARITDSGAAY 391
           +  NLD +   ++ DTG  AL          S    T L L   +     ++Y
Sbjct: 569 RLANLDLKHCEKLDDTGFRALAFYSQNLLQVSGISFTRLHLLKEKYVQQSSSY 621



 Score = 41.6 bits (96), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 4/129 (3%)

Query: 20  LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHL 77
           + +++L+    C+ L  L LG    ++D  +  IA     L  +DL     + D GL  L
Sbjct: 453 VNDIALKYLSRCSKLVRLKLGLCTNISDIGLAHIACNCPKLTELDLYRCVRIGDDGLAAL 512

Query: 78  KD-CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVK 135
              C+ L  L+  +C +I+D GL+ +  L  L+    R  + IT+ G+KA A     L  
Sbjct: 513 TTGCNKLAMLNLAYCNRITDAGLKCISNLGELSDFELRGLSNITSIGIKAVAVSCKRLAN 572

Query: 136 LDLERCTRI 144
           LDL+ C ++
Sbjct: 573 LDLKHCEKL 581


>gi|357511813|ref|XP_003626195.1| F-box/LRR-repeat protein [Medicago truncatula]
 gi|355501210|gb|AES82413.1| F-box/LRR-repeat protein [Medicago truncatula]
          Length = 679

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 120/417 (28%), Positives = 198/417 (47%), Gaps = 57/417 (13%)

Query: 69  VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLS---NLTSLSFRRNNAITAQGM 124
           VTD GL  +   CS L+ L   +C++ISD G++ L       N   +S+ +   +T + +
Sbjct: 197 VTDIGLAKIAVGCSKLEKLSLKWCLEISDLGIDLLSKKCFDLNFLDVSYLK---VTNESL 253

Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNL-KGLMKLESLNIKWCNCITDSD-MKPLSGLTN 181
           ++ A L+ L    +  C  +   GL  L KG   L+++++  CNC++ S  +  +SG   
Sbjct: 254 RSIASLLKLEVFIMVGCYLVDDAGLQFLEKGCPLLKAIDVSRCNCVSPSGLLSVISGHEG 313

Query: 182 LKSLQI-SC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRC 238
           L+ +    C S+++      LK L+ L+++ ++G  V+   L  + S   SL  L L++C
Sbjct: 314 LEQINAGHCLSELSAPLTNGLKNLKHLSVIRIDGVRVSDFILQIIGSNCKSLVELGLSKC 373

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT 297
                       IG   V N+G  ++         G  NL +L+L  C  + D  +  + 
Sbjct: 374 ------------IG---VTNMGIMQVV--------GCCNLTTLDLTCCRFVTDAAISTIA 410

Query: 298 GLC-NLKCLEL-SDTQVGSSGLRHL-SGLTNLESINLS-FTGISDGSLRKLAGLSSLKSL 353
             C NL CL+L S   V   GL  + S    LE ++L+  +G++D +L+ L+  S L  L
Sbjct: 411 NSCPNLACLKLESCDMVTEIGLYQIGSSCLMLEELDLTDCSGVNDIALKYLSRCSKLVRL 470

Query: 354 NLD-ARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKN---LRSLEICGGG 407
            L     I+D GLA +  +   LT LDL+   RI D G A L    N   + +L  C   
Sbjct: 471 KLGLCTNISDIGLAHIACNCPKLTELDLYRCVRIGDDGLAALTTGCNKLAMLNLAYC-NR 529

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
           +TDAG+K I +L  L+   L    N+T           G+ ++ VS  R+ +  L+H
Sbjct: 530 ITDAGLKCISNLGELSDFELRGLSNITS---------IGIKAVAVSCKRLANLDLKH 577



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 116/431 (26%), Positives = 188/431 (43%), Gaps = 50/431 (11%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
           L+ L L     ++D  +D+++ +   L  +D+S   VT+  L  +     L+      C 
Sbjct: 212 LEKLSLKWCLEISDLGIDLLSKKCFDLNFLDVSYLKVTNESLRSIASLLKLEVFIMVGCY 271

Query: 93  QISDGGLEHL-RGLSNLTSLSFRRNNAITAQG-MKAFAGLINLVKLDLERC-TRIHGGLV 149
            + D GL+ L +G   L ++   R N ++  G +   +G   L +++   C + +   L 
Sbjct: 272 LVDDAGLQFLEKGCPLLKAIDVSRCNCVSPSGLLSVISGHEGLEQINAGHCLSELSAPLT 331

Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ----ISCSKVTDSGIAYLKGLQK 205
           N  GL  L+ L++   + +  SD       +N KSL       C  VT+ GI  + G   
Sbjct: 332 N--GLKNLKHLSVIRIDGVRVSDFILQIIGSNCKSLVELGLSKCIGVTNMGIMQVVGCCN 389

Query: 206 LTLLNLEGCP-VTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
           LT L+L  C  VT A + +++ +  +L  L L  C +               V  +G  +
Sbjct: 390 LTTLDLTCCRFVTDAAISTIANSCPNLACLKLESCDM---------------VTEIGLYQ 434

Query: 264 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLS 321
           I   CL+       LE L+L  C G+ D  L  L+    L  L+L   T +   GL H++
Sbjct: 435 IGSSCLM-------LEELDLTDCSGVNDIALKYLSRCSKLVRLKLGLCTNISDIGLAHIA 487

Query: 322 ----GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTH 376
                LT L+       G  DG      G + L  LNL    +ITD GL  +++L  L+ 
Sbjct: 488 CNCPKLTELDLYRCVRIG-DDGLAALTTGCNKLAMLNLAYCNRITDAGLKCISNLGELSD 546

Query: 377 LDLFG-ARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS-SLTLLNLSQN 430
            +L G + IT  G    A   +   NL  L+ C   L D G + +   S +L  +N+S  
Sbjct: 547 FELRGLSNITSIGIKAVAVSCKRLANL-DLKHC-EKLDDTGFRALAFYSQNLLQINMSY- 603

Query: 431 CNLTDKTLELI 441
           CN++D  L L+
Sbjct: 604 CNVSDHVLWLL 614



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 16/187 (8%)

Query: 20  LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHL 77
           + +++L+    C+ L  L LG    ++D  +  IA     L  +DL     + D GL  L
Sbjct: 453 VNDIALKYLSRCSKLVRLKLGLCTNISDIGLAHIACNCPKLTELDLYRCVRIGDDGLAAL 512

Query: 78  KD-CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVK 135
              C+ L  L+  +C +I+D GL+ +  L  L+    R  + IT+ G+KA A     L  
Sbjct: 513 TTGCNKLAMLNLAYCNRITDAGLKCISNLGELSDFELRGLSNITSIGIKAVAVSCKRLAN 572

Query: 136 LDLERCTRIHG-GLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
           LDL+ C ++   G   L    + L  +N+ +CN ++D  +  L  ++NLK LQ       
Sbjct: 573 LDLKHCEKLDDTGFRALAFYSQNLLQINMSYCN-VSDHVLWLL--MSNLKRLQ------- 622

Query: 194 DSGIAYL 200
           D+ + YL
Sbjct: 623 DAKLVYL 629


>gi|451982090|ref|ZP_21930421.1| exproted hypothetical protein [Nitrospina gracilis 3/211]
 gi|451760644|emb|CCQ91701.1| exproted hypothetical protein [Nitrospina gracilis 3/211]
          Length = 323

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 102/221 (46%), Gaps = 18/221 (8%)

Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV-- 256
           YL  LQ L L N    P  AA L S +    L +LNL   Q+   G E  +   +LK   
Sbjct: 94  YLPNLQTLNLFNNRIGPEGAAALASSNKYPHLSHLNLWGNQIGPSGAEALANSDTLKALE 153

Query: 257 -LNLGFNEITDECLVHLKGLTNLES---LNLDSCGIGDEGLVNLTG---LCNLKCLELSD 309
            L+L  N I D  L+ L     LE    L LD  G+GD GL  L     L NL+ L LS 
Sbjct: 154 YLDLSGNGIGDPGLIALARSPVLERIRILRLDKNGVGDRGLAALASSPYLGNLEVLSLSH 213

Query: 310 TQVGSSGLRHLSG---LTNLESINLSFTGISDGSLRKLA---GLSSLKSLNLDARQITDT 363
            ++G  G + L+    +  L  + L    I D  ++ LA      +L+ L+L    IT+T
Sbjct: 214 NEIGQEGAKVLAESPYIRKLRQLRLERNRIGDVGVKHLAESEAFQNLEELDLQWNGITET 273

Query: 364 G---LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
           G   LA    LT L  L L+G  I ++G   ++   NL+++
Sbjct: 274 GAHDLAGSPVLTRLNRLYLWGNEIGNAGVRAIKKSDNLKNV 314



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 85/275 (30%), Positives = 124/275 (45%), Gaps = 29/275 (10%)

Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS------KIGSLKVLNLGFNEITDECL 269
           + A  L  L   G+   LN +   L DDG  + +      K+ +L + + GF     + L
Sbjct: 31  INAIILKELKQNGTHLKLNFS-GMLGDDGVRQLARSRLLKKVETLDLNSHGFGNAGAQGL 89

Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTG---LCNLKCLELSDTQVGSSGLRHLSG---L 323
              K L NL++LNL +  IG EG   L       +L  L L   Q+G SG   L+    L
Sbjct: 90  ADSKYLPNLQTLNLFNNRIGPEGAAALASSNKYPHLSHLNLWGNQIGPSGAEALANSDTL 149

Query: 324 TNLESINLSFTGISDGSLRKLAG---LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
             LE ++LS  GI D  L  LA    L  ++ L LD   + D GLAAL S   L +L++ 
Sbjct: 150 KALEYLDLSGNGIGDPGLIALARSPVLERIRILRLDKNGVGDRGLAALASSPYLGNLEVL 209

Query: 381 G---ARITDSGAAYLRN---FKNLRSLEICGGGLTDAGVKHIKD---LSSLTLLNLSQNC 431
                 I   GA  L      + LR L +    + D GVKH+ +     +L  L+L  N 
Sbjct: 210 SLSHNEIGQEGAKVLAESPYIRKLRQLRLERNRIGDVGVKHLAESEAFQNLEELDLQWNG 269

Query: 432 NLTDKTLELISG---LTGLVSLNVSNSRITSAGLR 463
            +T+     ++G   LT L  L +  + I +AG+R
Sbjct: 270 -ITETGAHDLAGSPVLTRLNRLYLWGNEIGNAGVR 303



 Score = 42.0 bits (97), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 87/191 (45%), Gaps = 34/191 (17%)

Query: 40  QYPGVN--DKWMDVIASQGSSLLS----------VDLSGSDVTDSGLIHLKDCSNLQ--- 84
           +YP ++  + W + I   G+  L+          +DLSG+ + D GLI L     L+   
Sbjct: 121 KYPHLSHLNLWGNQIGPSGAEALANSDTLKALEYLDLSGNGIGDPGLIALARSPVLERIR 180

Query: 85  --SLDFNFCIQISDGGLEHLRG---LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
              LD N    + D GL  L     L NL  LS   +N I  +G K  A    + KL   
Sbjct: 181 ILRLDKN---GVGDRGLAALASSPYLGNLEVLSL-SHNEIGQEGAKVLAESPYIRKLRQL 236

Query: 140 RCTRIHGGLVNLKGLMK------LESLNIKWCNCITDSDMKPLSG---LTNLKSLQISCS 190
           R  R   G V +K L +      LE L+++W N IT++    L+G   LT L  L +  +
Sbjct: 237 RLERNRIGDVGVKHLAESEAFQNLEELDLQW-NGITETGAHDLAGSPVLTRLNRLYLWGN 295

Query: 191 KVTDSGIAYLK 201
           ++ ++G+  +K
Sbjct: 296 EIGNAGVRAIK 306


>gi|428304289|ref|YP_007141114.1| hypothetical protein Cri9333_0667 [Crinalium epipsammum PCC 9333]
 gi|428245824|gb|AFZ11604.1| leucine-rich repeat-containing protein [Crinalium epipsammum PCC
           9333]
          Length = 382

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 90/283 (31%), Positives = 134/283 (47%), Gaps = 49/283 (17%)

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
           LE ++ L NLT L F  N       +    GL NL  L L R       + ++K L+ L 
Sbjct: 126 LEGIQALRNLTELRFGENKI---SDLAPLRGLTNLTTLHLYR-----NQISDVKPLLSLR 177

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
           +L     +    SD+KPL+GLT L +L +  +K+TD  +  L GL  LT L L G  ++ 
Sbjct: 178 NLTSLELSSNPISDLKPLAGLTKLTTLGLGGNKITD--LKPLAGLANLTTLELSGNKISD 235

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
             L  L+ L +L  L L+  ++SD                          L  + GLT L
Sbjct: 236 --LKPLAGLANLTKLYLSGNKISD--------------------------LKPVAGLTKL 267

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
             L LD+  I D  +  L GL NL  L L + ++    ++ L+ LT+L  + LS   ISD
Sbjct: 268 TKLWLDNNQISD--VQPLAGLINLTFLSLDNNKIND--VQPLANLTSLMGLGLSLNKISD 323

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
             +  L GL+ L  L+L+  +I+D     +T L GLT+L++ G
Sbjct: 324 --VTPLRGLTKLNWLDLNLNKISD-----VTPLAGLTNLNVNG 359



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 112/222 (50%), Gaps = 18/222 (8%)

Query: 237 RCQL-SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
           R QL + D     + +  +K LNL   EIT   L  ++ L NL  L      I D  L  
Sbjct: 95  RQQLGTGDKPLTLNALQRVKHLNLINKEIT--SLEGIQALRNLTELRFGENKISD--LAP 150

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           L GL NL  L L   Q+  S ++ L  L NL S+ LS   ISD  L+ LAGL+ L +L L
Sbjct: 151 LRGLTNLTTLHLYRNQI--SDVKPLLSLRNLTSLELSSNPISD--LKPLAGLTKLTTLGL 206

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
              +ITD  L  L  L  LT L+L G +I+D     L    NL  L + G  ++D  +K 
Sbjct: 207 GGNKITD--LKPLAGLANLTTLELSGNKISD--LKPLAGLANLTKLYLSGNKISD--LKP 260

Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
           +  L+ LT L L  N  ++D  ++ ++GL  L  L++ N++I
Sbjct: 261 VAGLTKLTKLWLDNN-QISD--VQPLAGLINLTFLSLDNNKI 299



 Score = 38.1 bits (87), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 13/126 (10%)

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           L  L  +K LNL  ++IT   L  + +L  LT L     +I+D   A LR   NL +L +
Sbjct: 107 LNALQRVKHLNLINKEIT--SLEGIQALRNLTELRFGENKISD--LAPLRGLTNLTTLHL 162

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS---- 459
               ++D  VK +  L +LT L LS N  ++D  L+ ++GLT L +L +  ++IT     
Sbjct: 163 YRNQISD--VKPLLSLRNLTSLELSSNP-ISD--LKPLAGLTKLTTLGLGGNKITDLKPL 217

Query: 460 AGLRHL 465
           AGL +L
Sbjct: 218 AGLANL 223


>gi|320164980|gb|EFW41879.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 769

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 115/277 (41%), Gaps = 26/277 (9%)

Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
           TSLS   +N IT+    AF  L  LV + L+                          N I
Sbjct: 45  TSLSLY-DNQITSLPASAFTSLTALVAVYLQD-------------------------NQI 78

Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
           T       +G+T LK L ++ +++T        GL  L  L L G  +T   L++   L 
Sbjct: 79  TAVPASAFAGMTTLKQLHLANNQLTSISTGTFAGLTSLVSLYLAGNQITTIPLNAFVDLT 138

Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
            L  L LN  Q++D     F+ +  +K L L  N+IT        GLT L  L L S  I
Sbjct: 139 QLVGLELNNNQITDIPASSFTGLSGMKRLTLNNNQITILSANAFTGLTALTELYLSSNTI 198

Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
                   TGL  L  +EL   Q+ S      +GL++L  + LS   I+  S     GL+
Sbjct: 199 TSISANAFTGLSALTMVELQFNQITSIASNSFTGLSSLIFLGLSSNRITSISDNAFTGLT 258

Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
            L SL L + QIT    +ALT +  L  L L G   T
Sbjct: 259 QLVSLTLFSNQITSISASALTGMPVLLQLTLTGNPFT 295



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 104/244 (42%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N IT       + LT L ++ +  +++T    +   G+  L  L+L    +T+    + +
Sbjct: 52  NQITSLPASAFTSLTALVAVYLQDNQITAVPASAFAGMTTLKQLHLANNQLTSISTGTFA 111

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            L SL  L L   Q++      F  +  L  L L  N+ITD       GL+ ++ L L++
Sbjct: 112 GLTSLVSLYLAGNQITTIPLNAFVDLTQLVGLELNNNQITDIPASSFTGLSGMKRLTLNN 171

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
             I        TGL  L  L LS   + S      +GL+ L  + L F  I+  +     
Sbjct: 172 NQITILSANAFTGLTALTELYLSSNTITSISANAFTGLSALTMVELQFNQITSIASNSFT 231

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
           GLSSL  L L + +IT     A T LT L  L LF  +IT   A+ L     L  L + G
Sbjct: 232 GLSSLIFLGLSSNRITSISDNAFTGLTQLVSLTLFSNQITSISASALTGMPVLLQLTLTG 291

Query: 406 GGLT 409
              T
Sbjct: 292 NPFT 295



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 109/258 (42%), Gaps = 28/258 (10%)

Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
           G   L+L + +   + A+   SL+AL +++   L   Q++      F+ + +LK L+L  
Sbjct: 43  GTTSLSLYDNQITSLPASAFTSLTALVAVY---LQDNQITAVPASAFAGMTTLKQLHLAN 99

Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
           N++T        GLT+L SL L    I    L     L  L  LEL++ Q          
Sbjct: 100 NQLTSISTGTFAGLTSLVSLYLAGNQITTIPLNAFVDLTQLVGLELNNNQ---------- 149

Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
                         I+D       GLS +K L L+  QIT     A T LT LT L L  
Sbjct: 150 --------------ITDIPASSFTGLSGMKRLTLNNNQITILSANAFTGLTALTELYLSS 195

Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
             IT   A        L  +E+    +T         LSSL  L LS N  +T  +    
Sbjct: 196 NTITSISANAFTGLSALTMVELQFNQITSIASNSFTGLSSLIFLGLSSN-RITSISDNAF 254

Query: 442 SGLTGLVSLNVSNSRITS 459
           +GLT LVSL + +++ITS
Sbjct: 255 TGLTQLVSLTLFSNQITS 272



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 109/235 (46%), Gaps = 14/235 (5%)

Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
           + ++N ITA    AFAG+  L +L L   + T I  G     GL  L SL +   N IT 
Sbjct: 72  YLQDNQITAVPASAFAGMTTLKQLHLANNQLTSISTG--TFAGLTSLVSLYLAG-NQITT 128

Query: 171 SDMKPLSGLTNLKSLQISCSKVTD---SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
             +     LT L  L+++ +++TD   S    L G+++LTL N +   ++A     L+AL
Sbjct: 129 IPLNAFVDLTQLVGLELNNNQITDIPASSFTGLSGMKRLTLNNNQITILSANAFTGLTAL 188

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
             L+   L+   ++      F+ + +L ++ L FN+IT        GL++L  L L S  
Sbjct: 189 TELY---LSSNTITSISANAFTGLSALTMVELQFNQITSIASNSFTGLSSLIFLGLSSNR 245

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDG 339
           I        TGL  L  L L   Q+ S     L+G+  L  + L+   FT +  G
Sbjct: 246 ITSISDNAFTGLTQLVSLTLFSNQITSISASALTGMPVLLQLTLTGNPFTTLPPG 300


>gi|422414916|ref|ZP_16491873.1| internalin A, partial [Listeria innocua FSL J1-023]
 gi|313625062|gb|EFR94940.1| internalin A [Listeria innocua FSL J1-023]
          Length = 676

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 120/393 (30%), Positives = 176/393 (44%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDIVMNNN-QIAD--ISPLANLTNLTGLTLFTN 152

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
                  +K    L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 153 QITDIDPLK---NLTNLNRLELSGNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN-- 234
           + LT L+ L IS +KVTD  +     L KLT  NLE    T   +  ++ LG L  L+  
Sbjct: 204 ANLTTLERLDISSNKVTDISV-----LSKLT--NLERLIATNNQISDITPLGILINLDEL 256

Query: 235 -LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
            LN  QL D G      + +L  L+L  N+I++  L  L  LT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LVSLTNLTNLDLANNQISN--LAPLTDLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL + Q+    +  +S L NL  + L    ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELHENQL--EDISPISNLKNLTYLTLYINNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGNNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKA 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459


>gi|371944024|gb|AEX61852.1| putative F-box_LRR-repeat protein [Megavirus courdo7]
          Length = 559

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 116/452 (25%), Positives = 204/452 (45%), Gaps = 101/452 (22%)

Query: 80  CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
           C N++S++ +    I+D  L+ LRG++ + +LS  +N  IT  G K      N+   +L 
Sbjct: 64  CQNIKSINLSRT-NITDKELQFLRGITKI-NLSCCKN--ITGSGFKYLQLAENI---NLS 116

Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL--------------SGLTNLKSL 185
            C +I G    L+ L  +  +N+   N I D  ++ L                 T +K +
Sbjct: 117 GCNQIIGS--ELRYLSNIVKINLSRTN-IDDQAIEYLIFGQKIDGNKEILIQPQTKIKFI 173

Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLF------------- 231
            +S +K+T+  I+YL  ++   ++N+  C  VT++CL  L  +  ++             
Sbjct: 174 DLSFTKITNCSISYLSNVK---IININSCEFVTSSCLQYLHNITHIYMNTYNVIIGDNIK 230

Query: 232 YLN------LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL---ESLN 282
           YLN      LN   LSD+  E    I  L++ N   ++IT + L  LK L  L    S N
Sbjct: 231 YLNKIKLLVLNDHTLSDNQLEYIQNIEHLEIYNTS-DKITHQGLQKLKNLKILSLRHSYN 289

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSL 341
           +D+        + +  L N  C +++D+         L  L +LE+INLS+   I+D  L
Sbjct: 290 IDTISFIPTNKIRILDLKN--CHQVTDSS--------LQYLPHLETINLSWCYKITDNGL 339

Query: 342 RKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN--- 397
           + L  ++++   NL    +ITD GL  L+    +     +  +ITD G  +LRN KN   
Sbjct: 340 KNLQHVTNI---NLSGCHRITDNGLVYLSKADSIN--ISYCIKITDDGLKHLRNVKNIKL 394

Query: 398 -----------------------LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
                                  ++ ++     +TD G+ ++ +  SL+LL      N+T
Sbjct: 395 GYHSTSDIYMIEYFEYDFSKEKYIKEIKNTKQLITDIGLSYLINTQSLSLLYCE---NIT 451

Query: 435 DKTLELISGLTGLVSLNVSN-SRITSAGLRHL 465
           D  L+ +S +    S++++N  +I   GL++L
Sbjct: 452 DDGLQYLSKIK---SISINNCPKIIGTGLKYL 480



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 160/329 (48%), Gaps = 40/329 (12%)

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
           L+   ++D+ L ++++  +L+   +N   +I+  GL+ L+   NL  LS R +  I    
Sbjct: 240 LNDHTLSDNQLEYIQNIEHLEI--YNTSDKITHQGLQKLK---NLKILSLRHSYNIDTI- 293

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
             +F     +  LDL+ C ++     +L+ L  LE++N+ WC  ITD+ +K L  +TN+ 
Sbjct: 294 --SFIPTNKIRILDLKNCHQVTDS--SLQYLPHLETINLSWCYKITDNGLKNLQHVTNIN 349

Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGS--LFYLNLNRCQL 240
                C ++TD+G+ Y   L K   +N+  C  +T   L  L  + +  L Y + +   +
Sbjct: 350 LS--GCHRITDNGLVY---LSKADSINISYCIKITDDGLKHLRNVKNIKLGYHSTSDIYM 404

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
            +     FSK   +K +      ITD   + L  L N +SL+L  C  I D+GL  L+  
Sbjct: 405 IEYFEYDFSKEKYIKEIKNTKQLITD---IGLSYLINTQSLSLLYCENITDDGLQYLSK- 460

Query: 300 CNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN---- 354
             +K + +++  ++  +GL++LS   + + INLS   +   SL+ L+  S +K  N    
Sbjct: 461 --IKSISINNCPKIIGTGLKYLS---DCQKINLSNVRLCKSSLKYLSLFSKIKINNNFTD 515

Query: 355 ------LDARQITDTGLAALTSLTGLTHL 377
                   A++I  +G   +T   GL HL
Sbjct: 516 DDLKYLSRAKKIKLSGFNKITK-NGLKHL 543



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 148/348 (42%), Gaps = 82/348 (23%)

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTL-------------------LNLEGCPVTAACL 221
           N+KS+ +S + +TD  + +L+G+ K+ L                   +NL GC       
Sbjct: 66  NIKSINLSRTNITDKELQFLRGITKINLSCCKNITGSGFKYLQLAENINLSGCNQIIG-- 123

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCE---------------------------KFSKI--- 251
             L  L ++  +NL+R  + D   E                            F+KI   
Sbjct: 124 SELRYLSNIVKINLSRTNIDDQAIEYLIFGQKIDGNKEILIQPQTKIKFIDLSFTKITNC 183

Query: 252 -----GSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
                 ++K++N+   E +T  CL +L  +T++  +N  +  IGD    N+  L  +K L
Sbjct: 184 SISYLSNVKIININSCEFVTSSCLQYLHNITHI-YMNTYNVIIGD----NIKYLNKIKLL 238

Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL---KSLNLDARQITD 362
            L+D  +  + L ++  + +LE  N S   I+   L+KL  L  L    S N+D      
Sbjct: 239 VLNDHTLSDNQLEYIQNIEHLEIYNTS-DKITHQGLQKLKNLKILSLRHSYNIDTISFIP 297

Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
           T    +  L           ++TDS   YL + + + +L  C   +TD G   +K+L  +
Sbjct: 298 TNKIRILDLKN-------CHQVTDSSLQYLPHLETI-NLSWC-YKITDNG---LKNLQHV 345

Query: 423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RITSAGLRHLNHAR 469
           T +NLS    +TD  L  +S      S+N+S   +IT  GL+HL + +
Sbjct: 346 TNINLSGCHRITDNGLVYLSKAD---SINISYCIKITDDGLKHLRNVK 390


>gi|357511817|ref|XP_003626197.1| F-box/LRR-repeat protein [Medicago truncatula]
 gi|355501212|gb|AES82415.1| F-box/LRR-repeat protein [Medicago truncatula]
          Length = 605

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 118/417 (28%), Positives = 197/417 (47%), Gaps = 57/417 (13%)

Query: 69  VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLS---NLTSLSFRRNNAITAQGM 124
           VTD GL  +   CS L+ L   +C++ISD G++ L       N   +S+ +   +T + +
Sbjct: 197 VTDIGLAKIAVGCSKLEKLSLKWCLEISDLGIDLLSKKCFDLNFLDVSYLK---VTNESL 253

Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNL-KGLMKLESLNIKWCNCITDSD-MKPLSGLTN 181
           ++ A L+ L    +  C  +   GL  L KG   L+++++  CNC++ S  +  +SG   
Sbjct: 254 RSIASLLKLEVFIMVGCYLVDDAGLQFLEKGCPLLKAIDVSRCNCVSPSGLLSVISGHEG 313

Query: 182 LKSLQI-SC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRC 238
           L+ +    C S+++      LK L+ L+++ ++G  V+   L  + S   SL  L L++C
Sbjct: 314 LEQINAGHCLSELSAPLTNGLKNLKHLSVIRIDGVRVSDFILQIIGSNCKSLVELGLSKC 373

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT 297
                          + V N+G  ++         G  NL +L+L  C  + D  +  + 
Sbjct: 374 ---------------IGVTNMGIMQVV--------GCCNLTTLDLTCCRFVTDAAISTIA 410

Query: 298 GLC-NLKCLEL-SDTQVGSSGLRHL-SGLTNLESINLS-FTGISDGSLRKLAGLSSLKSL 353
             C NL CL+L S   V   GL  + S    LE ++L+  +G++D +L+ L+  S L  L
Sbjct: 411 NSCPNLACLKLESCDMVTEIGLYQIGSSCLMLEELDLTDCSGVNDIALKYLSRCSKLVRL 470

Query: 354 NLD-ARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKN---LRSLEICGGG 407
            L     I+D GLA +  +   LT LDL+   RI D G A L    N   + +L  C   
Sbjct: 471 KLGLCTNISDIGLAHIACNCPKLTELDLYRCVRIGDDGLAALTTGCNKLAMLNLAYC-NR 529

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
           +TDAG+K I +L  L+   L    N+T           G+ ++ VS  R+ +  L+H
Sbjct: 530 ITDAGLKCISNLGELSDFELRGLSNITS---------IGIKAVAVSCKRLANLDLKH 577



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 85/178 (47%), Gaps = 7/178 (3%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEH 101
           V D  +  IA+   +L  + L   D VT+ GL  +   C  L+ LD   C  ++D  L++
Sbjct: 401 VTDAAISTIANSCPNLACLKLESCDMVTEIGLYQIGSSCLMLEELDLTDCSGVNDIALKY 460

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNLK-GLMKLE 158
           L   S L  L       I+  G+   A     L +LDL RC RI   GL  L  G  KL 
Sbjct: 461 LSRCSKLVRLKLGLCTNISDIGLAHIACNCPKLTELDLYRCVRIGDDGLAALTTGCNKLA 520

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGI-AYLKGLQKLTLLNLEGC 214
            LN+ +CN ITD+ +K +S L  L   ++   S +T  GI A     ++L  L+L+ C
Sbjct: 521 MLNLAYCNRITDAGLKCISNLGELSDFELRGLSNITSIGIKAVAVSCKRLANLDLKHC 578



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 164/382 (42%), Gaps = 48/382 (12%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
           L+ L L     ++D  +D+++ +   L  +D+S   VT+  L  +     L+      C 
Sbjct: 212 LEKLSLKWCLEISDLGIDLLSKKCFDLNFLDVSYLKVTNESLRSIASLLKLEVFIMVGCY 271

Query: 93  QISDGGLEHL-RGLSNLTSLSFRRNNAITAQG-MKAFAGLINLVKLDLERC-----TRIH 145
            + D GL+ L +G   L ++   R N ++  G +   +G   L +++   C       + 
Sbjct: 272 LVDDAGLQFLEKGCPLLKAIDVSRCNCVSPSGLLSVISGHEGLEQINAGHCLSELSAPLT 331

Query: 146 GGLVNLKGL----------------------MKLESLNIKWCNCITDSDMKPLSGLTNLK 183
            GL NLK L                        L  L +  C  +T+  +  + G  NL 
Sbjct: 332 NGLKNLKHLSVIRIDGVRVSDFILQIIGSNCKSLVELGLSKCIGVTNMGIMQVVGCCNLT 391

Query: 184 SLQISCSK-VTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNR 237
           +L ++C + VTD+ I+ +      L  L LE C +       L  +GS    L  L+L  
Sbjct: 392 TLDLTCCRFVTDAAISTIANSCPNLACLKLESCDMVTEI--GLYQIGSSCLMLEELDLTD 449

Query: 238 CQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK-GLTNLESLNLDSC-GIGDEGL 293
           C  ++D   +  S+   L  L LG    I+D  L H+      L  L+L  C  IGD+GL
Sbjct: 450 CSGVNDIALKYLSRCSKLVRLKLGLCTNISDIGLAHIACNCPKLTELDLYRCVRIGDDGL 509

Query: 294 VNLTGLCN-LKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSL 350
             LT  CN L  L L+   ++  +GL+ +S L  L    L   + I+   ++ +A +S  
Sbjct: 510 AALTTGCNKLAMLNLAYCNRITDAGLKCISNLGELSDFELRGLSNITSIGIKAVA-VSCK 568

Query: 351 KSLNLDAR---QITDTGLAALT 369
           +  NLD +   ++ DTG  AL 
Sbjct: 569 RLANLDLKHCEKLDDTGFRALA 590



 Score = 41.6 bits (96), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 4/129 (3%)

Query: 20  LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHL 77
           + +++L+    C+ L  L LG    ++D  +  IA     L  +DL     + D GL  L
Sbjct: 453 VNDIALKYLSRCSKLVRLKLGLCTNISDIGLAHIACNCPKLTELDLYRCVRIGDDGLAAL 512

Query: 78  KD-CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVK 135
              C+ L  L+  +C +I+D GL+ +  L  L+    R  + IT+ G+KA A     L  
Sbjct: 513 TTGCNKLAMLNLAYCNRITDAGLKCISNLGELSDFELRGLSNITSIGIKAVAVSCKRLAN 572

Query: 136 LDLERCTRI 144
           LDL+ C ++
Sbjct: 573 LDLKHCEKL 581


>gi|281206083|gb|EFA80272.1| hypothetical protein PPL_07099 [Polysphondylium pallidum PN500]
          Length = 1036

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 178/401 (44%), Gaps = 59/401 (14%)

Query: 67  SDVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGM 124
           S +TD  + ++ K+C+NL+ L  N C  ++D  +  L +   NL  LS  R   +T   +
Sbjct: 295 SHITDDSVKNIAKNCANLEELHLNNCYLLTDNSITFLVKRCKNLKVLSMSRCERVTDYTL 354

Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
              +                       K L  LES+ I     +TD  +  L  L N+KS
Sbjct: 355 FEIS-----------------------KNLKALESICINRMKYVTDKGLADLKNL-NIKS 390

Query: 185 LQISCSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSD 242
                + +TD  I+ L    ++L +LN+      A C++  +   S   L+  + Q L  
Sbjct: 391 FYAYETLLTDQSISELALRWRQLEVLNV------AKCINVTNQALSTVALHCPQIQKLFV 444

Query: 243 DGCEKFS---------KIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDS-CGIGDE 291
           +GC K S         K   ++VL +     ITDE ++ L+ L +L +LN+ + C   ++
Sbjct: 445 NGCPKISSEAIVLVAQKCPLIRVLRIDNCPNITDEAILALEFLKSLHTLNVSNLCKFNEQ 504

Query: 292 GLV-------NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
            L+       NL  L   +C  +SD  V   G +H   L  L      F G  D  +  L
Sbjct: 505 SLIKILPSLPNLEQLFLYQCPRISDATVAVIG-QHCPNLKVLRLDQSIFPG--DAGVSCL 561

Query: 345 AGLSSLKSLNL-DARQITDTGLAAL-TSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSL 401
               SLK LNL +   I D  + +L T LTGL  L L G + +TD+    + N + +  L
Sbjct: 562 VNCKSLKGLNLSNLENIHDQTIISLSTELTGLQKLYLTGCKGLTDASLDAITNIRTIEIL 621

Query: 402 EICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
            I      ++  + ++  L +L++LN+S   N TDK L+L+
Sbjct: 622 RINDSFQFSEDALCNLAKLQNLSVLNMSGCVNTTDKVLDLL 662



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 187/427 (43%), Gaps = 53/427 (12%)

Query: 68   DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
            ++ D  +I L  + + LQ L    C  ++D  L+ +  +  +  L    +   +   +  
Sbjct: 577  NIHDQTIISLSTELTGLQKLYLTGCKGLTDASLDAITNIRTIEILRINDSFQFSEDALCN 636

Query: 127  FAGLINLVKLDLERCTRIHGGLVNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
             A L NL  L++  C      +++L      +L  L +    CITD  + P+        
Sbjct: 637  LAKLQNLSVLNMSGCVNTTDKVLDLLICYCQQLTQLYLSNLPCITDRILPPMLASLLKLR 696

Query: 185  LQI--SCSKVTDSGIAYLK--GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ- 239
            L     CS VTD+ +  L+  GL+ L + N  G  +    L S+ +  +L  L +  C+ 
Sbjct: 697  LLRIDGCSNVTDNALIGLRFNGLRYLEVFNCSGTFIGDEGLYSIVSQSALRELYMWNCET 756

Query: 240  LSDDGCEKFS-KIGSLKVLNLGF-NEITDECLVH-LKGLTNLESLNLDSCGIGDEGLVNL 296
            ++D+G +K    + +L+VL +    +ITD+ +   L+    L +LN+    +GD+ L  +
Sbjct: 757  ITDNGLKKIDMYLQNLEVLRVDRCKKITDKGIRSILQKAVLLRTLNISHTNLGDDTLTTV 816

Query: 297  TGLCNL---------------------------------KCLELSDTQVGSSGLRHLSGL 323
             G C L                                 +C ++SDT V    +R  S  
Sbjct: 817  AGYCKLLKKLICTNLSRISDSGVSAVALQCPLLKMIDVSRCFKISDTAVIELSVR--SKY 874

Query: 324  TNLESINLSFTGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTSL-TGLTHLDL- 379
                SIN   + I++ S+ KL+ G   LK +NL +  ++ + G+ AL++    +T L++ 
Sbjct: 875  LKKFSIN-GNSKITNTSIIKLSVGCPRLKVVNLQECSKVGEVGILALSTYCKYITTLNVS 933

Query: 380  FGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS-QNCNLTDKT 437
                +TD S     R    L+SL      L DAGV  +   S++ L  L  Q+ N+TD+ 
Sbjct: 934  HCPLVTDLSIVGIGRECLGLKSLNASHTLLGDAGVIEVAVRSNINLEFLDIQSTNVTDQA 993

Query: 438  LELISGL 444
            L +++ +
Sbjct: 994  LSMVAQM 1000



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 115/458 (25%), Positives = 205/458 (44%), Gaps = 57/458 (12%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSDVTDS---GLIHLKDCSNLQSLDFNFCIQISDGGLE 100
           VN  ++  + ++   + S DL   D   S   G   + DCS ++               E
Sbjct: 184 VNGPYVVPVENELWPIYSPDLFAIDKVPSYGLGTPQVDDCSAVK---------------E 228

Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN--LKGLMKLE 158
            +  L N+  ++  ++NA+    +++ A    L  L+L  CT       N  +  L  L 
Sbjct: 229 KISLLKNIF-VNQHQHNAVDDVLLESVAECKQLEFLNLSNCTNFTLAQFNKTIGRLRNLR 287

Query: 159 SLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCP 215
            LN+  C+ ITD  +K ++    NL+ L ++ C  +TD+ I +L K  + L +L++  C 
Sbjct: 288 GLNLTNCSHITDDSVKNIAKNCANLEELHLNNCYLLTDNSITFLVKRCKNLKVLSMSRCE 347

Query: 216 -VTAACLDSLSA-LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE--ITDECLVH 271
            VT   L  +S  L +L  + +NR +   D  +  + + +L + +    E  +TD+ +  
Sbjct: 348 RVTDYTLFEISKNLKALESICINRMKYVTD--KGLADLKNLNIKSFYAYETLLTDQSISE 405

Query: 272 LK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD------TQVGSSGLRHLS-- 321
           L      LE LN+  C  + ++ L  +     L C ++         ++ S  +  ++  
Sbjct: 406 LALRWRQLEVLNVAKCINVTNQALSTVA----LHCPQIQKLFVNGCPKISSEAIVLVAQK 461

Query: 322 -GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD--ARQITDTGLAALTSLTGLTHLD 378
             L  +  I+ +   I+D ++  L  L SL +LN+    +    + +  L SL  L  L 
Sbjct: 462 CPLIRVLRID-NCPNITDEAILALEFLKSLHTLNVSNLCKFNEQSLIKILPSLPNLEQLF 520

Query: 379 LFG-ARITDSGAAYL----RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
           L+   RI+D+  A +     N K LR  +    G  DAGV  + +  SL  LNLS   N+
Sbjct: 521 LYQCPRISDATVAVIGQHCPNLKVLRLDQSIFPG--DAGVSCLVNCKSLKGLNLSNLENI 578

Query: 434 TDKT-LELISGLTGLVSLNVSNSR-ITSAGLRHLNHAR 469
            D+T + L + LTGL  L ++  + +T A L  + + R
Sbjct: 579 HDQTIISLSTELTGLQKLYLTGCKGLTDASLDAITNIR 616


>gi|207743099|ref|YP_002259491.1| lrr-gala family type III effector protein (gala 5) [Ralstonia
           solanacearum IPO1609]
 gi|206594496|emb|CAQ61423.1| lrr-gala family type III effector protein (gala 5) [Ralstonia
           solanacearum IPO1609]
          Length = 526

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 131/282 (46%), Gaps = 2/282 (0%)

Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
           +L  S + V   G+  L   + LT L+L    +  A    L A   L  LN+NR ++   
Sbjct: 210 TLNASRNGVGGEGVRALVDCKTLTSLDLSENGLGDAEAQRLGASERLTTLNVNRNRIDVQ 269

Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
           G    +   +L  L++G N I D  +  L     L +LN++   +G  G+  L     L 
Sbjct: 270 GARALADCKTLTSLDIGGNSIGDAGVEALLANAQLTTLNVERAAVGAHGVRALADSKTLT 329

Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
            L + D  +G  G + L+  T+L +++    GI     + LA  + L +LNL    I D 
Sbjct: 330 SLRI-DNNIGDEGAKTLAASTSLTTLHSESNGIGLAGAKALAANTRLTTLNLGHNGIGDA 388

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
           G  A  + T L  L +    ++D+GA  L   K L +L+     + DAG + +    +LT
Sbjct: 389 GAQAWLANTTLVSLSVRRNGLSDAGATRLAASKTLTTLDAGDNAIKDAGARALAANRTLT 448

Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
            L++S N  + +     ++  T L SL++ N+R+  AG+R L
Sbjct: 449 TLDVSSN-EIGNAGARALAANTRLASLDLRNNRMLEAGVRAL 489



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 124/266 (46%), Gaps = 1/266 (0%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N + D++ + L     L +L ++ +++   G   L   + LT L++ G  +  A +++L 
Sbjct: 240 NGLGDAEAQRLGASERLTTLNVNRNRIDVQGARALADCKTLTSLDIGGNSIGDAGVEALL 299

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
           A   L  LN+ R  +   G    +   +L  L +  N I DE    L   T+L +L+ +S
Sbjct: 300 ANAQLTTLNVERAAVGAHGVRALADSKTLTSLRID-NNIGDEGAKTLAASTSLTTLHSES 358

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
            GIG  G   L     L  L L    +G +G +     T L S+++   G+SD    +LA
Sbjct: 359 NGIGLAGAKALAANTRLTTLNLGHNGIGDAGAQAWLANTTLVSLSVRRNGLSDAGATRLA 418

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
              +L +L+     I D G  AL +   LT LD+    I ++GA  L     L SL++  
Sbjct: 419 ASKTLTTLDAGDNAIKDAGARALAANRTLTTLDVSSNEIGNAGARALAANTRLASLDLRN 478

Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNC 431
             + +AGV+ +    +L+ L +S NC
Sbjct: 479 NRMLEAGVRALLVNRTLSSLGVSFNC 504


>gi|157877504|ref|XP_001687069.1| conserved hypothetical protein [Leishmania major strain Friedlin]
 gi|68130144|emb|CAJ09455.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 1207

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 139/278 (50%), Gaps = 16/278 (5%)

Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
           SG+  L  L++L  L++   P+  A L +L+   SL  + L+RC+      E   ++  L
Sbjct: 421 SGVRSLGSLKQLRCLHILYTPLHEAFLQALTTCSSLECIILHRCR-GVRSLEPLRRLQHL 479

Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGD-EGLVNLTGLCNLKCLELSDTQV 312
           + L+L    +TD  L+ L G T L  L LD C  I D   L NL G   L+ L +  T +
Sbjct: 480 QSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRG--TLERLLMPRTLL 537

Query: 313 GSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
            ++ ++H+     L  ++L S   ++D  +  L  L++L+ LNL    +TD G +AL  +
Sbjct: 538 SNANMQHIGLCDKLVELHLQSLRQLTDIGV--LKDLTALRVLNLSDNLVTDEGCSALHCM 595

Query: 372 TGLTHLDLFGAR-ITDSGAAYL---RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
             L  L+L   R IT   AA+    R    L SL++    +TDAGV+ +++ + L  LNL
Sbjct: 596 PSLQRLNLAFCRCITSLAAAFTASGRWMHRLLSLDVSHTNITDAGVQCMQECTDLRYLNL 655

Query: 428 SQNCNLTD-KTLELISGLTGLVSLNVSNSRITSAGLRH 464
              C  ++ + L  +  ++ L  LN+  +R+T     H
Sbjct: 656 ---CGCSELRRLSWLQKMSSLRWLNLGGTRVTDEETNH 690



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 143/313 (45%), Gaps = 53/313 (16%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-GGLEHLRGLSNLTSLSFRRNN 117
           L S+ L G  VTD+ L+ L  C+ L+ L  + C QI+D   L +LRG   L  L   R  
Sbjct: 479 LQSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRG--TLERLLMPR-T 535

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
            ++   M+       LV+L L+          +L+ L                +D+  L 
Sbjct: 536 LLSNANMQHIGLCDKLVELHLQ----------SLRQL----------------TDIGVLK 569

Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA--------LGS 229
            LT L+ L +S + VTD G + L  +  L  LNL  C     C+ SL+A        +  
Sbjct: 570 DLTALRVLNLSDNLVTDEGCSALHCMPSLQRLNLAFC----RCITSLAAAFTASGRWMHR 625

Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGI 288
           L  L+++   ++D G +   +   L+ LNL G +E+    L  L+ +++L  LNL    +
Sbjct: 626 LLSLDVSHTNITDAGVQCMQECTDLRYLNLCGCSELRR--LSWLQKMSSLRWLNLGGTRV 683

Query: 289 GDEGLVN-LTGLCNLKCLELSDTQVGSSGLRHLS---GLTNLESINLSFTGISDGSLRKL 344
            DE   + L    NL+ L LSD     SG+R LS    L  LE ++L  T ++D  L  L
Sbjct: 684 TDEETNHYLPCARNLRFLSLSDC----SGVRSLSFAVRLHQLEYLSLESTSVADSELPCL 739

Query: 345 AGLSSLKSLNLDA 357
                L+ L+L++
Sbjct: 740 CHCRKLRYLSLES 752



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 118/247 (47%), Gaps = 21/247 (8%)

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL-GSLF 231
           ++PL  L +L+SL +    VTD+ +  L G  +L  L L+ C      L  L+ L G+L 
Sbjct: 470 LEPLRRLQHLQSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITD-LSFLANLRGTLE 528

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
            L + R  LS+   +       L  L+L    ++TD  +  LK LT L  LNL    + D
Sbjct: 529 RLLMPRTLLSNANMQHIGLCDKLVELHLQSLRQLTD--IGVLKDLTALRVLNLSDNLVTD 586

Query: 291 EGLVNLTGLCNLKCLELS----DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
           EG   L  + +L+ L L+     T + ++       +  L S+++S T I+D  ++ +  
Sbjct: 587 EGCSALHCMPSLQRLNLAFCRCITSLAAAFTASGRWMHRLLSLDVSHTNITDAGVQCMQE 646

Query: 347 LSSLKSLNL----DARQITDTGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLR-- 399
            + L+ LNL    + R+     L+ L  ++ L  L+L G R+TD     YL   +NLR  
Sbjct: 647 CTDLRYLNLCGCSELRR-----LSWLQKMSSLRWLNLGGTRVTDEETNHYLPCARNLRFL 701

Query: 400 SLEICGG 406
           SL  C G
Sbjct: 702 SLSDCSG 708


>gi|407424780|gb|EKF39143.1| hypothetical protein MOQ_000636 [Trypanosoma cruzi marinkellei]
          Length = 936

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 105/403 (26%), Positives = 181/403 (44%), Gaps = 24/403 (5%)

Query: 8   QQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS 67
           QQ+ +   +    TEV + A R+  L    LG  P    K   V        LS+ +S S
Sbjct: 310 QQVSDVTPFLPHCTEVRVLALRNTHLTSEKLGLLP---QKCRHV------EQLSLCMSSS 360

Query: 68  DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH-LRGLSNLTSLSFRRNNAITAQGMKA 126
                 L H   C+ L+ LD ++  Q+++ G+   +  L  L+ LS      I  +G++ 
Sbjct: 361 VSCTRFLRHRSLCA-LRDLDLSY-TQVTEEGMHRDVSRLKKLSRLSLEGCRKI--EGLQW 416

Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL--TNLKS 184
              L  L +LDL   +     L  L+   +L  L+++WC  IT   +K L G    +L+ 
Sbjct: 417 LRALTQLRELDLGYSSVTDDSLTALRFCPELVRLDLQWCGRIT--SLKCLVGALCDSLRE 474

Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
           L ++ + VTD G+  LK    L  ++LEGC   +  ++ L  L  L  +++ R ++++ G
Sbjct: 475 LNLTETSVTDEGLVPLKDFAALEWISLEGCGAVSD-VNVLCNLTRLREVDVGRTRVTNGG 533

Query: 245 CEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
               S+  +L+ + +     +TD     L  L  LE ++L  C + +EG+  L G  +L+
Sbjct: 534 VLSLSQCQALRAMRMRQCYRLTDASF--LGALQQLEEVDLSDCPVTNEGIAALCGARSLR 591

Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD- 362
            L+L       S +  L GL +L  ++L  T + +     LA    L +L + +  +   
Sbjct: 592 KLQLQSCH-AVSDVNFLGGLEHLMLLDLHHTTVDEAGSVGLAQCPQLTTLIMHSVLVHSL 650

Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
               A   L  L  LDL   ++T    ++LR    L +L + G
Sbjct: 651 QHWNAALFLPRLKRLDLSTTKVTSDALSFLRMCPILETLSLRG 693



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 117/477 (24%), Positives = 210/477 (44%), Gaps = 83/477 (17%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLD---FNFCIQISDGGLEHLRGLSNLTSLSFR 114
           +L  +DLS + VT+ G+ H +D S L+ L       C +I   GL+ LR L+ L  L   
Sbjct: 374 ALRDLDLSYTQVTEEGM-H-RDVSRLKKLSRLSLEGCRKIE--GLQWLRALTQLRELDLG 429

Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHG-------------------------GLV 149
             +++T   + A      LV+LDL+ C RI                           GLV
Sbjct: 430 -YSSVTDDSLTALRFCPELVRLDLQWCGRITSLKCLVGALCDSLRELNLTETSVTDEGLV 488

Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
            LK    LE ++++ C  ++D ++  L  LT L+ + +  ++VT+ G+  L   Q L  +
Sbjct: 489 PLKDFAALEWISLEGCGAVSDVNV--LCNLTRLREVDVGRTRVTNGGVLSLSQCQALRAM 546

Query: 210 NLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDE 267
            +  C  +T A    L AL  L  ++L+ C ++++G        SL+ L L   + ++D 
Sbjct: 547 RMRQCYRLTDASF--LGALQQLEEVDLSDCPVTNEGIAALCGARSLRKLQLQSCHAVSD- 603

Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG---LT 324
            +  L GL +L  L+L    + + G V L     L  L +    V S  L+H +    L 
Sbjct: 604 -VNFLGGLEHLMLLDLHHTTVDEAGSVGLAQCPQLTTLIMHSVLVHS--LQHWNAALFLP 660

Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGL--------- 374
            L+ ++LS T ++  +L  L     L++L+L   + IT      + + +G+         
Sbjct: 661 RLKRLDLSTTKVTSDALSFLRMCPILETLSLRGCKNITHLDFLIIQTSSGVGVCGIAPHD 720

Query: 375 -----THLDLFGAR--------------------ITDSGAAYLRNFKNLRSLEICGGGLT 409
                T +D+   +                    I  + AA +     LR L +   G+T
Sbjct: 721 AEPHDTLVDIIAGKEKNPDDGPSPIENMTINDGAIKSTAAAPVVGRHRLRELTLSDTGVT 780

Query: 410 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
           + G++ ++    L  L L+   N+T+  + ++  L+ L  L++S + +T +GL +L+
Sbjct: 781 NDGLRALQYCPGLERLRLAHCKNVTE--VAVLRWLSQLKELDLSATGVTGSGLANLS 835



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 99/435 (22%), Positives = 179/435 (41%), Gaps = 80/435 (18%)

Query: 47  KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC--------------- 91
           +W+  +    + L  +DL  S VTD  L  L+ C  L  LD  +C               
Sbjct: 415 QWLRAL----TQLRELDLGYSSVTDDSLTALRFCPELVRLDLQWCGRITSLKCLVGALCD 470

Query: 92  ---------IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
                      ++D GL  L+  + L  +S     A++   +     L  L ++D+ R  
Sbjct: 471 SLRELNLTETSVTDEGLVPLKDFAALEWISLEGCGAVS--DVNVLCNLTRLREVDVGRTR 528

Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
             +GG+++L     L ++ ++ C  +TD+    L  L  L+ + +S   VT+ GIA L G
Sbjct: 529 VTNGGVLSLSQCQALRAMRMRQCYRLTDASF--LGALQQLEEVDLSDCPVTNEGIAALCG 586

Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG------CEKFSK------ 250
            + L  L L+ C   +  ++ L  L  L  L+L+   + + G      C + +       
Sbjct: 587 ARSLRKLQLQSCHAVSD-VNFLGGLEHLMLLDLHHTTVDEAGSVGLAQCPQLTTLIMHSV 645

Query: 251 -------------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL- 296
                        +  LK L+L   ++T + L  L+    LE+L+L  C    + + +L 
Sbjct: 646 LVHSLQHWNAALFLPRLKRLDLSTTKVTSDALSFLRMCPILETLSLRGC----KNITHLD 701

Query: 297 ---------TGLCNLKC--LELSDTQVGSSGLRHLS---GLTNLESINLSFTGISDGSLR 342
                     G+C +     E  DT V     +  +   G + +E++ ++   I   +  
Sbjct: 702 FLIIQTSSGVGVCGIAPHDAEPHDTLVDIIAGKEKNPDDGPSPIENMTINDGAIKSTAAA 761

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSL 401
            + G   L+ L L    +T+ GL AL    GL  L L   + +T+   A LR    L+ L
Sbjct: 762 PVVGRHRLRELTLSDTGVTNDGLRALQYCPGLERLRLAHCKNVTE--VAVLRWLSQLKEL 819

Query: 402 EICGGGLTDAGVKHI 416
           ++   G+T +G+ ++
Sbjct: 820 DLSATGVTGSGLANL 834



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 148/354 (41%), Gaps = 42/354 (11%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           + L  VD+  + VT+ G++ L  C  L+++    C +++D     L  L  L  +    +
Sbjct: 517 TRLREVDVGRTRVTNGGVLSLSQCQALRAMRMRQCYRLTDASF--LGALQQLEEVDLS-D 573

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIH-----GGLVNLK---------------GLMK 156
             +T +G+ A  G  +L KL L+ C  +      GGL +L                GL +
Sbjct: 574 CPVTNEGIAALCGARSLRKLQLQSCHAVSDVNFLGGLEHLMLLDLHHTTVDEAGSVGLAQ 633

Query: 157 LESLNIKWCNCITDSDMKPLSG---LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
              L     + +    ++  +    L  LK L +S +KVT   +++L+    L  L+L G
Sbjct: 634 CPQLTTLIMHSVLVHSLQHWNAALFLPRLKRLDLSTTKVTSDALSFLRMCPILETLSLRG 693

Query: 214 CPVTAACLDSL-----SALGSLFYLNLNRCQLSDD------GCEKFSKIGSLKVLNLGFN 262
           C      LD L     S +G +  +  +  +  D       G EK    G   + N+  N
Sbjct: 694 C-KNITHLDFLIIQTSSGVG-VCGIAPHDAEPHDTLVDIIAGKEKNPDDGPSPIENMTIN 751

Query: 263 E--ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
           +  I       + G   L  L L   G+ ++GL  L     L+ L L+  +   + +  L
Sbjct: 752 DGAIKSTAAAPVVGRHRLRELTLSDTGVTNDGLRALQYCPGLERLRLAHCK-NVTEVAVL 810

Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
             L+ L+ ++LS TG++   L  L+   +L    +  R+  + G  +  ++TG+
Sbjct: 811 RWLSQLKELDLSATGVTGSGLANLSPSGNLPVRCMREREWKEEGGVSGDNMTGV 864


>gi|241575665|ref|XP_002403227.1| F-box/LRR-repeat protein, putative [Ixodes scapularis]
 gi|215502182|gb|EEC11676.1| F-box/LRR-repeat protein, putative [Ixodes scapularis]
          Length = 411

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 145/311 (46%), Gaps = 51/311 (16%)

Query: 32  ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFN 89
           +L +L L     + D  +  IA     L  +DL G S+V+++GL+ +     NL+SL+  
Sbjct: 123 SLSELNLSMCKQITDNSLGRIAQHLKGLERLDLGGCSNVSNTGLLLVAWGLKNLRSLNLR 182

Query: 90  FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
            C  +SD G+ HL G++                  +A  G + L  L L+ C ++    +
Sbjct: 183 SCRGVSDPGIGHLAGMTP-----------------EAAHGTLRLEALCLQDCQKLTDDAL 225

Query: 150 NLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQK 205
                GL  L SLN+ +C  +TD+ +K  + +  L+ L + SC  ++D G+AYL +G  +
Sbjct: 226 RFVSLGLADLRSLNLSFCASVTDAGLKHAARMPRLRELNLRSCDNISDLGLAYLAEGGSR 285

Query: 206 LTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
           L  L++  C        L +   L  L  L+LN C +SDDG  + +              
Sbjct: 286 LCALDVSFCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRVA-------------- 331

Query: 264 ITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHL 320
                    + L +L +L+L  CG + D+GL  +   L  L+C++L   T++ + GL  L
Sbjct: 332 ---------RSLGDLHTLHLGQCGRVTDKGLSLIADHLKQLRCIDLYGCTKITTVGLERL 382

Query: 321 SGLTNLESINL 331
             L +L  +NL
Sbjct: 383 MQLPHLGVLNL 393



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 156/341 (45%), Gaps = 75/341 (21%)

Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
           ++G+  LE+LN+  C  +TD+ +    +  + +L  L +S C ++TD+ +     +LKGL
Sbjct: 91  IQGVPNLEALNMIGCFNLTDTWLSHAFVQDVHSLSELNLSMCKQITDNSLGRIAQHLKGL 150

Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
           ++L L                                   GC   S  G L V       
Sbjct: 151 ERLDL----------------------------------GGCSNVSNTGLLLV------- 169

Query: 264 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC--------NLKCLELSDTQ-VG 313
                     GL NL SLNL SC G+ D G+ +L G+          L+ L L D Q + 
Sbjct: 170 --------AWGLKNLRSLNLRSCRGVSDPGIGHLAGMTPEAAHGTLRLEALCLQDCQKLT 221

Query: 314 SSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS 370
              LR +S GL +L S+NLSF   ++D  L+  A +  L+ LNL +   I+D GLA L  
Sbjct: 222 DDALRFVSLGLADLRSLNLSFCASVTDAGLKHAARMPRLRELNLRSCDNISDLGLAYLAE 281

Query: 371 -LTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLN 426
             + L  LD+ F  ++ D G  +  +    LRSL +    ++D G+  + + L  L  L+
Sbjct: 282 GGSRLCALDVSFCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRVARSLGDLHTLH 341

Query: 427 LSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHL 465
           L Q   +TDK L LI+  L  L  +++   ++IT+ GL  L
Sbjct: 342 LGQCGRVTDKGLSLIADHLKQLRCIDLYGCTKITTVGLERL 382



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 6/165 (3%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLE 139
           ++L+SL+ +FC  ++D GL+H   +  L  L+ R  + I+  G+   A G   L  LD+ 
Sbjct: 233 ADLRSLNLSFCASVTDAGLKHAARMPRLRELNLRSCDNISDLGLAYLAEGGSRLCALDVS 292

Query: 140 RCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSG 196
            C ++   G L   +GL +L SL++  C    D   +    L +L +L +  C +VTD G
Sbjct: 293 FCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRVARSLGDLHTLHLGQCGRVTDKG 352

Query: 197 IAYLK-GLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ 239
           ++ +   L++L  ++L GC  +T   L+ L  L  L  LNL   Q
Sbjct: 353 LSLIADHLKQLRCIDLYGCTKITTVGLERLMQLPHLGVLNLGLWQ 397


>gi|290992631|ref|XP_002678937.1| predicted protein [Naegleria gruberi]
 gi|284092552|gb|EFC46193.1| predicted protein [Naegleria gruberi]
          Length = 215

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 7/198 (3%)

Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
           L + G E  SK+  L  LN+  N+I      +L+ L  L + N+ +  I  +    L+ L
Sbjct: 2   LGNIGAEHISKLKQLTYLNIQNNQIGSTGAKYLRELKQLTNPNIHTNDIDSKRAEYLSEL 61

Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
             L+ LE+    + S+G+ +LS +     + ++   I    ++ L  L  L  L++   Q
Sbjct: 62  KQLQTLEIGYNNIESAGVEYLSSIEQFSHLGVAANEIVTEGVKWLGNLKQLTYLDISCNQ 121

Query: 360 ITDTG-------LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
           +   G       +  LT +  L +LD+ G  I D GA  L   K L+ L +    +++ G
Sbjct: 122 VFIIGDDINSEEVEILTGMQQLQYLDIGGNYIDDEGAKCLSKLKELKHLNVLRNAISEEG 181

Query: 413 VKHIKDLSSLTLLNLSQN 430
            +HI  L  LT LN++ N
Sbjct: 182 AQHISKLEKLTFLNIANN 199



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 99/203 (48%), Gaps = 9/203 (4%)

Query: 98  GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
           G EH+  L  LT L+ + NN I + G K    L  L   ++            L  L +L
Sbjct: 6   GAEHISKLKQLTYLNIQ-NNQIGSTGAKYLRELKQLTNPNIHTNDIDSKRAEYLSELKQL 64

Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE----- 212
           ++L I + N I  + ++ LS +     L ++ +++   G+ +L  L++LT L++      
Sbjct: 65  QTLEIGYNN-IESAGVEYLSSIEQFSHLGVAANEIVTEGVKWLGNLKQLTYLDISCNQVF 123

Query: 213 --GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
             G  + +  ++ L+ +  L YL++    + D+G +  SK+  LK LN+  N I++E   
Sbjct: 124 IIGDDINSEEVEILTGMQQLQYLDIGGNYIDDEGAKCLSKLKELKHLNVLRNAISEEGAQ 183

Query: 271 HLKGLTNLESLNLDSCGIGDEGL 293
           H+  L  L  LN+ +  IG +G+
Sbjct: 184 HISKLEKLTFLNIANNDIGYQGI 206



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 85/185 (45%), Gaps = 8/185 (4%)

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           +G+ G  +++ L  L  L + + Q+GS+G ++L  L  L + N+    I       L+ L
Sbjct: 2   LGNIGAEHISKLKQLTYLNIQNNQIGSTGAKYLRELKQLTNPNIHTNDIDSKRAEYLSEL 61

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE----- 402
             L++L +    I   G+  L+S+   +HL +    I   G  +L N K L  L+     
Sbjct: 62  KQLQTLEIGYNNIESAGVEYLSSIEQFSHLGVAANEIVTEGVKWLGNLKQLTYLDISCNQ 121

Query: 403 --ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
             I G  +    V+ +  +  L  L++  N  + D+  + +S L  L  LNV  + I+  
Sbjct: 122 VFIIGDDINSEEVEILTGMQQLQYLDIGGNY-IDDEGAKCLSKLKELKHLNVLRNAISEE 180

Query: 461 GLRHL 465
           G +H+
Sbjct: 181 GAQHI 185



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 93/211 (44%), Gaps = 8/211 (3%)

Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
           G  ++  L++LT LN++   + +     L  L  L   N++   +     E  S++  L+
Sbjct: 6   GAEHISKLKQLTYLNIQNNQIGSTGAKYLRELKQLTNPNIHTNDIDSKRAEYLSELKQLQ 65

Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV--- 312
            L +G+N I    + +L  +     L + +  I  EG+  L  L  L  L++S  QV   
Sbjct: 66  TLEIGYNNIESAGVEYLSSIEQFSHLGVAANEIVTEGVKWLGNLKQLTYLDISCNQVFII 125

Query: 313 ----GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
                S  +  L+G+  L+ +++    I D   + L+ L  LK LN+    I++ G   +
Sbjct: 126 GDDINSEEVEILTGMQQLQYLDIGGNYIDDEGAKCLSKLKELKHLNVLRNAISEEGAQHI 185

Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
           + L  LT L++    I   G  YL   K L 
Sbjct: 186 SKLEKLTFLNIANNDIGYQG-IYLSKMKQLH 215



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 89/199 (44%), Gaps = 7/199 (3%)

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
           + +S L  L YLN+   Q+   G +   ++  L   N+  N+I  +   +L  L  L++L
Sbjct: 8   EHISKLKQLTYLNIQNNQIGSTGAKYLRELKQLTNPNIHTNDIDSKRAEYLSELKQLQTL 67

Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS-----FTG- 335
            +    I   G+  L+ +     L ++  ++ + G++ L  L  L  +++S       G 
Sbjct: 68  EIGYNNIESAGVEYLSSIEQFSHLGVAANEIVTEGVKWLGNLKQLTYLDISCNQVFIIGD 127

Query: 336 -ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            I+   +  L G+  L+ L++    I D G   L+ L  L HL++    I++ GA ++  
Sbjct: 128 DINSEEVEILTGMQQLQYLDIGGNYIDDEGAKCLSKLKELKHLNVLRNAISEEGAQHISK 187

Query: 395 FKNLRSLEICGGGLTDAGV 413
            + L  L I    +   G+
Sbjct: 188 LEKLTFLNIANNDIGYQGI 206


>gi|290995979|ref|XP_002680560.1| predicted protein [Naegleria gruberi]
 gi|284094181|gb|EFC47816.1| predicted protein [Naegleria gruberi]
          Length = 263

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 76/137 (55%)

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           ++ +  L  L +++ Q+   G++++S +  L S+N+S   I D   + ++ +  L SLN+
Sbjct: 126 ISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEMKQLTSLNI 185

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
              +I++ G+  L+ +  LT L++   RI+D  A Y+   K L SL I    + D GVK+
Sbjct: 186 YDNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIGYNEIGDKGVKY 245

Query: 416 IKDLSSLTLLNLSQNCN 432
           I ++  LT L++  N N
Sbjct: 246 ISEMKQLTSLDIGDNPN 262



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 72/131 (54%)

Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
           S++  L  LN+  N+I  E + ++  +  L SLN+    IGD+G   ++ +  L  L + 
Sbjct: 127 SEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEMKQLTSLNIY 186

Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
           D ++ + G+++LS +  L S+N+    ISD   + ++ +  L SLN+   +I D G+  +
Sbjct: 187 DNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIGYNEIGDKGVKYI 246

Query: 369 TSLTGLTHLDL 379
           + +  LT LD+
Sbjct: 247 SEMKQLTSLDI 257



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 69/126 (54%), Gaps = 1/126 (0%)

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           ++ +  L SLN+   QI   G+  ++ +  L  L++    I D GA Y+   K L SL I
Sbjct: 126 ISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEMKQLTSLNI 185

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
               +++ GVK++ ++  LT LN+  N  ++D+  + IS +  L+SLN+  + I   G++
Sbjct: 186 YDNEISNEGVKYLSEMKQLTSLNIGVN-RISDEEAKYISEMKQLISLNIGYNEIGDKGVK 244

Query: 464 HLNHAR 469
           +++  +
Sbjct: 245 YISEMK 250



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 1/141 (0%)

Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
           V ++  + +S +  L S+N++   I    ++ ++ +  L SLN+   +I D G   ++ +
Sbjct: 118 VKTNQTKFISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEM 177

Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
             LT L+++   I++ G  YL   K L SL I    ++D   K+I ++  L  LN+  N 
Sbjct: 178 KQLTSLNIYDNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIGYN- 236

Query: 432 NLTDKTLELISGLTGLVSLNV 452
            + DK ++ IS +  L SL++
Sbjct: 237 EIGDKGVKYISEMKQLTSLDI 257



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 68/129 (52%)

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           +  L SLN+ +  I  EG+  ++ +  L  L +S+ ++G  G +++S +  L S+N+   
Sbjct: 129 MKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEMKQLTSLNIYDN 188

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            IS+  ++ L+ +  L SLN+   +I+D     ++ +  L  L++    I D G  Y+  
Sbjct: 189 EISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIGYNEIGDKGVKYISE 248

Query: 395 FKNLRSLEI 403
            K L SL+I
Sbjct: 249 MKQLTSLDI 257



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 78/149 (52%), Gaps = 2/149 (1%)

Query: 163 KW--CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
           +W   + +  +  K +S +  L SL I+ +++   G+ Y+  +++L  LN+    +    
Sbjct: 111 RWLLASLVKTNQTKFISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKG 170

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
              +S +  L  LN+   ++S++G +  S++  L  LN+G N I+DE   ++  +  L S
Sbjct: 171 AKYISEMKQLTSLNIYDNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLIS 230

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
           LN+    IGD+G+  ++ +  L  L++ D
Sbjct: 231 LNIGYNEIGDKGVKYISEMKQLTSLDIGD 259



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 74/143 (51%)

Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
            S V  +   ++  +++LT LN+    +    +  +S +  L  LN++  ++ D G +  
Sbjct: 115 ASLVKTNQTKFISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYI 174

Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
           S++  L  LN+  NEI++E + +L  +  L SLN+    I DE    ++ +  L  L + 
Sbjct: 175 SEMKQLTSLNIYDNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIG 234

Query: 309 DTQVGSSGLRHLSGLTNLESINL 331
             ++G  G++++S +  L S+++
Sbjct: 235 YNEIGDKGVKYISEMKQLTSLDI 257



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
           L  + +  +   ++   K L SL I    +   GVK+I ++  L  LN+S+N  + DK  
Sbjct: 113 LLASLVKTNQTKFISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISEN-EIGDKGA 171

Query: 439 ELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           + IS +  L SLN+ ++ I++ G+++L+  +
Sbjct: 172 KYISEMKQLTSLNIYDNEISNEGVKYLSEMK 202



 Score = 45.1 bits (105), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 2/123 (1%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           QI   G++++  +  L SL+   N  I  +G K  + +  L  L++      + G+  L 
Sbjct: 141 QICVEGVKYISEMKQLLSLNISEN-EIGDKGAKYISEMKQLTSLNIYDNEISNEGVKYLS 199

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
            + +L SLNI   N I+D + K +S +  L SL I  +++ D G+ Y+  +++LT L++ 
Sbjct: 200 EMKQLTSLNIG-VNRISDEEAKYISEMKQLISLNIGYNEIGDKGVKYISEMKQLTSLDIG 258

Query: 213 GCP 215
             P
Sbjct: 259 DNP 261



 Score = 44.7 bits (104), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 1/116 (0%)

Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
           G+  +  + +L SLNI   N I D   K +S +  L SL I  +++++ G+ YL  +++L
Sbjct: 146 GVKYISEMKQLLSLNIS-ENEIGDKGAKYISEMKQLTSLNIYDNEISNEGVKYLSEMKQL 204

Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
           T LN+    ++      +S +  L  LN+   ++ D G +  S++  L  L++G N
Sbjct: 205 TSLNIGVNRISDEEAKYISEMKQLISLNIGYNEIGDKGVKYISEMKQLTSLDIGDN 260


>gi|290970032|ref|XP_002668015.1| predicted protein [Naegleria gruberi]
 gi|284081037|gb|EFC35271.1| predicted protein [Naegleria gruberi]
          Length = 224

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 95/192 (49%), Gaps = 1/192 (0%)

Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
           + ++G +   ++  L  L++G N+I  + L H+  L  L+ L +    +GD G   ++ +
Sbjct: 14  IGNEGFKFICEMKQLTYLDVGRNDINSKGLNHITNLDKLKDLRIYYNSVGD-GAKYISEM 72

Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
             L  L ++   +   G + +S L  + ++N+SF  I +  L  ++ +  L  LN+ +  
Sbjct: 73  KQLTNLNVNTACINEKGAKFISELPLVTNLNISFNEIGNQGLEHISRMKQLTHLNIQSNN 132

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
           I DTG+  L  L  LT LD+    I + G   L   + L  L+I    +   GVKHI ++
Sbjct: 133 IDDTGVYFLHGLDQLTTLDISKHIIGEKGTKLLSEMEQLTHLDISECCIQYEGVKHISEM 192

Query: 420 SSLTLLNLSQNC 431
            +LT  N+  NC
Sbjct: 193 KNLTYPNICLNC 204



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 107/225 (47%), Gaps = 5/225 (2%)

Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
           +++LT L++    +       +  +  L YL++ R  ++  G    + +  LK L + +N
Sbjct: 1   MRQLTCLSVSNNNIGNEGFKFICEMKQLTYLDVGRNDINSKGLNHITNLDKLKDLRIYYN 60

Query: 263 EITD--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
            + D  + +  +K LTNL   N+++  I ++G   ++ L  +  L +S  ++G+ GL H+
Sbjct: 61  SVGDGAKYISEMKQLTNL---NVNTACINEKGAKFISELPLVTNLNISFNEIGNQGLEHI 117

Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
           S +  L  +N+    I D  +  L GL  L +L++    I + G   L+ +  LTHLD+ 
Sbjct: 118 SRMKQLTHLNIQSNNIDDTGVYFLHGLDQLTTLDISKHIIGEKGTKLLSEMEQLTHLDIS 177

Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
              I   G  ++   KNL    IC       G K + ++ +L  L
Sbjct: 178 ECCIQYEGVKHISEMKNLTYPNICLNCFGKGGAKCLCEMKNLIKL 222



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 110/249 (44%), Gaps = 27/249 (10%)

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
           +  LT LS   NN I  +G K    +  L  LD+ R                   +N K 
Sbjct: 1   MRQLTCLSVSNNN-IGNEGFKFICEMKQLTYLDVGR-----------------NDINSKG 42

Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
            N IT+ D         LK L+I  + V D G  Y+  +++LT LN+    +       +
Sbjct: 43  LNHITNLD--------KLKDLRIYYNSVGD-GAKYISEMKQLTNLNVNTACINEKGAKFI 93

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
           S L  +  LN++  ++ + G E  S++  L  LN+  N I D  +  L GL  L +L++ 
Sbjct: 94  SELPLVTNLNISFNEIGNQGLEHISRMKQLTHLNIQSNNIDDTGVYFLHGLDQLTTLDIS 153

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
              IG++G   L+ +  L  L++S+  +   G++H+S + NL   N+       G  + L
Sbjct: 154 KHIIGEKGTKLLSEMEQLTHLDISECCIQYEGVKHISEMKNLTYPNICLNCFGKGGAKCL 213

Query: 345 AGLSSLKSL 353
             + +L  L
Sbjct: 214 CEMKNLIKL 222



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 2/123 (1%)

Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
           +  L  L++    I + G   +  +  LT+LD+    I   G  ++ N   L+ L I   
Sbjct: 1   MRQLTCLSVSNNNIGNEGFKFICEMKQLTYLDVGRNDINSKGLNHITNLDKLKDLRIYYN 60

Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
            + D G K+I ++  LT LN++  C + +K  + IS L  + +LN+S + I + GL H++
Sbjct: 61  SVGD-GAKYISEMKQLTNLNVNTAC-INEKGAKFISELPLVTNLNISFNEIGNQGLEHIS 118

Query: 467 HAR 469
             +
Sbjct: 119 RMK 121


>gi|425701584|gb|AFX92746.1| putative F-box/LRR-repeat protein [Megavirus courdo11]
          Length = 559

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 110/447 (24%), Positives = 193/447 (43%), Gaps = 118/447 (26%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
            N+ S++  R N IT + ++   G+    K++L  C  I G     K L   E++N+  C
Sbjct: 65  QNIKSINLSRTN-ITDKELQFLCGI---TKINLSCCKNITGS--GFKYLQLAENINLSGC 118

Query: 166 NCITDSDMKPLSGL-----------------------------------TNLKSLQISCS 190
           N I  S+++ LS +                                   T +K + +S +
Sbjct: 119 NQIIGSELRYLSNIVKINLSRTNIDDQAIEYLIFGQKIDGNKEILIQPQTKIKFIDLSFT 178

Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLF-------------YLN-- 234
           K+T+  I+YL  ++   ++N+  C  VT++CL  L  +  ++             YLN  
Sbjct: 179 KITNCSISYLSNVK---IININSCEFVTSSCLQYLHNITHIYMNTYNVIIGDNIKYLNKI 235

Query: 235 ----LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL---ESLNLDSCG 287
               LN   LSD+  E    I  L++ N   ++IT + L  LK L  L    S N+D+  
Sbjct: 236 KLLVLNDHTLSDNQLEYIQNIEHLEIYNTS-DKITHQGLQKLKNLKILSLRHSYNIDTIS 294

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAG 346
                 + +  L N  C +++D+         L  L +LE+INLS+   I+D  L+ L  
Sbjct: 295 FIPTNKIRILDLKN--CHQVTDSS--------LQYLPHLETINLSWCYKITDNGLKNLQH 344

Query: 347 LSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN-------- 397
           ++++   NL    +ITD GL  L+    +     +  +ITD G  +LRN KN        
Sbjct: 345 VTNI---NLSGCHRITDNGLVYLSKADSIN--ISYCIKITDDGLKHLRNVKNIKLGYHST 399

Query: 398 ------------------LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
                             ++ ++     +TD G+ ++ +  SL+LL      N+TD  L+
Sbjct: 400 SDIYMIEYFEYDFSKEKYIKEIKNTKQLITDIGLSYLINTQSLSLLYCE---NITDDGLQ 456

Query: 440 LISGLTGLVSLNVSN-SRITSAGLRHL 465
            +S +    S++++N  +I   GL++L
Sbjct: 457 YLSKIK---SISINNCPKIIGTGLKYL 480



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 162/330 (49%), Gaps = 42/330 (12%)

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
           L+   ++D+ L ++++  +L+   +N   +I+  GL+ L+   NL  LS R +  I    
Sbjct: 240 LNDHTLSDNQLEYIQNIEHLEI--YNTSDKITHQGLQKLK---NLKILSLRHSYNIDTI- 293

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
             +F     +  LDL+ C ++     +L+ L  LE++N+ WC  ITD+ +K L  +TN  
Sbjct: 294 --SFIPTNKIRILDLKNCHQVTDS--SLQYLPHLETINLSWCYKITDNGLKNLQHVTN-- 347

Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGS--LFYLNLNRCQ 239
            + +S C ++TD+G+ Y   L K   +N+  C  +T   L  L  + +  L Y + +   
Sbjct: 348 -INLSGCHRITDNGLVY---LSKADSINISYCIKITDDGLKHLRNVKNIKLGYHSTSDIY 403

Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
           + +     FSK   +K +      ITD   + L  L N +SL+L  C  I D+GL  L+ 
Sbjct: 404 MIEYFEYDFSKEKYIKEIKNTKQLITD---IGLSYLINTQSLSLLYCENITDDGLQYLSK 460

Query: 299 LCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN--- 354
              +K + +++  ++  +GL++LS   + + INLS   +   SL+ L+  S +K  N   
Sbjct: 461 ---IKSISINNCPKIIGTGLKYLS---DCQKINLSNVRLCKSSLKYLSLFSKIKINNNFT 514

Query: 355 -------LDARQITDTGLAALTSLTGLTHL 377
                    A++I  +G   +T   GL HL
Sbjct: 515 DDDLKYLSRAKKIKLSGFNKITK-NGLKHL 543



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 147/348 (42%), Gaps = 82/348 (23%)

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTL-------------------LNLEGCPVTAACL 221
           N+KS+ +S + +TD  + +L G+ K+ L                   +NL GC       
Sbjct: 66  NIKSINLSRTNITDKELQFLCGITKINLSCCKNITGSGFKYLQLAENINLSGCNQIIG-- 123

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCE---------------------------KFSKI--- 251
             L  L ++  +NL+R  + D   E                            F+KI   
Sbjct: 124 SELRYLSNIVKINLSRTNIDDQAIEYLIFGQKIDGNKEILIQPQTKIKFIDLSFTKITNC 183

Query: 252 -----GSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
                 ++K++N+   E +T  CL +L  +T++  +N  +  IGD    N+  L  +K L
Sbjct: 184 SISYLSNVKIININSCEFVTSSCLQYLHNITHI-YMNTYNVIIGD----NIKYLNKIKLL 238

Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL---KSLNLDARQITD 362
            L+D  +  + L ++  + +LE  N S   I+   L+KL  L  L    S N+D      
Sbjct: 239 VLNDHTLSDNQLEYIQNIEHLEIYNTS-DKITHQGLQKLKNLKILSLRHSYNIDTISFIP 297

Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
           T    +  L           ++TDS   YL + + + +L  C   +TD G   +K+L  +
Sbjct: 298 TNKIRILDLKN-------CHQVTDSSLQYLPHLETI-NLSWC-YKITDNG---LKNLQHV 345

Query: 423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RITSAGLRHLNHAR 469
           T +NLS    +TD  L  +S      S+N+S   +IT  GL+HL + +
Sbjct: 346 TNINLSGCHRITDNGLVYLSKAD---SINISYCIKITDDGLKHLRNVK 390


>gi|261331843|emb|CBH14837.1| leucine-rich repeat protein (LRRP, pseudogene),putative
           [Trypanosoma brucei gambiense DAL972]
          Length = 1517

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 158/387 (40%), Gaps = 90/387 (23%)

Query: 32  ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
           AL +L L     +N  W  +   Q   L    LS + +TD  + H   C NL +LD +FC
Sbjct: 624 ALNELNLSDCFEINAGWEALEKLQ--QLHVAILSNTHITDGDISHFSKCKNLVTLDLSFC 681

Query: 92  IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
            ++ D     +  LSN+T+L                        L+L  C++I  GL  L
Sbjct: 682 DKLLD-----VTALSNITTLE----------------------DLNLSNCSKIRKGLSVL 714

Query: 152 KGLMKLESLNIKWC----------------------NCITDSDMKPLSGLTNLKSLQIS- 188
             L +L  LN+K                        NC    D+KPLS L  L+ L +  
Sbjct: 715 GELPRLRVLNVKGVLLEDSVIGSLGNGKSFAKLSLENCKGFGDVKPLSNLVTLEELNLHY 774

Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEK 247
           C KVT SG+  L  L +L +L+L         L+++ ++   L  LNL+ C+        
Sbjct: 775 CDKVT-SGMGTLGSLPQLRVLDLGRTQADNNSLENICTSSIPLVLLNLSHCK-------- 825

Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
             KI S+                 +  LT LE LN+D+C     G      L  L+   L
Sbjct: 826 --KITSIST---------------IASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATL 868

Query: 308 SDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
           S+T++    +R++S   +L ++NL+F   I+D  +  L+ ++ L+ LNLD       G+ 
Sbjct: 869 SNTRINDENIRYVSECKSLNTLNLAFCKDITD--VTALSKITMLEELNLDCCHNIRKGIE 926

Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLR 393
            L  L          ARI      Y+ 
Sbjct: 927 TLGKLP--------KARILSMKECYME 945



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 127/490 (25%), Positives = 202/490 (41%), Gaps = 71/490 (14%)

Query: 37   CLGQYPGVNDKWMDVIA------SQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFN 89
            CL +   +N K+ D+        S+  SL S++LS    VTD  +  L   S L+ L+ +
Sbjct: 1038 CLPRLRVLNLKYTDINGDVTKNISESKSLRSLNLSHCKWVTDISV--LSSLSTLEELNIS 1095

Query: 90   FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
             C QI  G  E L  L  L  ++   +  ITA+ +   +    LVKL   RC  +    V
Sbjct: 1096 ECEQIRKGW-ESLGKLP-LLRVAILSDTKITAKDIVCLSSCKTLVKLKFFRCEELSDVTV 1153

Query: 150  NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGLQKLTL 208
              K +  LE L +K C+      +K L+    L  L+   S K     + +  G   L L
Sbjct: 1154 VYK-IQSLEELIVKNCS----DGLKGLNAPGTLPRLRFFASAKCERMLLVHSHGCVFLLL 1208

Query: 209  LNLEGCPVTAACLDS--------------------LSALGSLFYLNLNRCQLSDDGCEKF 248
             N+ G  ++   + +                    LS + SL  L+L  C  +  G    
Sbjct: 1209 RNVRGSDISVESIGTSKSLVRLTIEVGEDLTDTTPLSDITSLEELSLRECGDNLGGVGTL 1268

Query: 249  SKIGSLKVLNLGFNEIT-----DECLV------------------HLKGLTNLESLNLDS 285
             K+  LK L+LG ++I+     D CL                   H+  LT LE LNL  
Sbjct: 1269 EKLPRLKSLDLGLSDISNSTLNDICLSRSITSLNLSNNYELTDISHISNLTALEELNLRG 1328

Query: 286  CGIGDEGLVNLTGLCNLKCLELSDTQVGSS-GLRHLSGLTNLESINLSFTGISDGSLRKL 344
            C     G   L+ L  L+ L L   +V +     ++S   +L ++N+  + ++D S   +
Sbjct: 1329 CYHITSGWEALSELPRLRVLNLESARVTTRYDGYYISRCKSLVTLNIQLSDMTDASY--I 1386

Query: 345  AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE-- 402
            A + +L+ L++        G +AL +L  L  LDLF +RITD     LRN +   ++E  
Sbjct: 1387 ANIKTLEELHIGECDELRWGFSALFTLPRLRILDLFMSRITDED---LRNIQPPHTIEEL 1443

Query: 403  ---ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
                C        +  IK + +L  L       L ++    +  L  L  + V N+ ++S
Sbjct: 1444 NLSYCENLNDITPLGRIKSIKNLHFLLSYDARRLREEGFRSLLELPCLSWVGVKNAYVSS 1503

Query: 460  AGLRHLNHAR 469
              LR L   R
Sbjct: 1504 DILRELRKRR 1513



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 124/507 (24%), Positives = 201/507 (39%), Gaps = 127/507 (25%)

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGL 105
           +DLSG+ V D+ L  L DC +L+ L+ ++CIQ++D          E L         RG+
Sbjct: 353 LDLSGAPVEDNFLKDLCDCGSLERLNLSYCIQLTDINPLSNAAATEELNLNGCRRITRGM 412

Query: 106 SNLTSLSFRR-----NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
             +  L   R     +  ++   + +      LVK+ L+ C    G +  L  ++ LE L
Sbjct: 413 GVVWVLPKLRVLHMKDMHLSEPSLDSVGTGGPLVKVSLDNCAGF-GDMTLLSSIVTLEEL 471

Query: 161 NIK----------------------WCN--------------------------CITDS- 171
           NI+                      WC                           C + S 
Sbjct: 472 NIQKCVDIISGVGCLGTLPYLVYLTWCGLPWYTTVPRVLNIKEAHISSLDFTGICASKSL 531

Query: 172 ---DMKPLSGLTNLKSLQ----------ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
              +M+ ++GL+N+++L           + C+ + D+ I  L    +L +L+L G     
Sbjct: 532 LQLNMESITGLSNVEALANILTLEKLSLLGCNGI-DAVIGCLGNPPQLKMLDLSGTNTDN 590

Query: 219 ACLDSL-----------------------SALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
             L SL                       S+L +L  LNL+ C   + G E   K+  L 
Sbjct: 591 ESLRSLCLSQTMVSLNLSHCWKMTNMSHISSLEALNELNLSDCFEINAGWEALEKLQQLH 650

Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE---LSDTQV 312
           V  L    ITD  + H     NL +L+L  C    + L+++T L N+  LE   LS+   
Sbjct: 651 VAILSNTHITDGDISHFSKCKNLVTLDLSFC----DKLLDVTALSNITTLEDLNLSNCSK 706

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSL 371
              GL  L  L  L  +N+    + D  +  L    S   L+L+  +   D  +  L++L
Sbjct: 707 IRKGLSVLGELPRLRVLNVKGVLLEDSVIGSLGNGKSFAKLSLENCKGFGD--VKPLSNL 764

Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS----LTLLNL 427
             L  L+L       SG   L +   LR L++   G T A    ++++ +    L LLNL
Sbjct: 765 VTLEELNLHYCDKVTSGMGTLGSLPQLRVLDL---GRTQADNNSLENICTSSIPLVLLNL 821

Query: 428 SQNCNLTDKTLELISGLTGLVSLNVSN 454
           S    +T  ++  I+ LT L  LN+ N
Sbjct: 822 SHCKKIT--SISTIASLTALEELNIDN 846



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 179/412 (43%), Gaps = 50/412 (12%)

Query: 94  ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
           + + G  HL  +  L  L     + +    ++  + L NL  L+L         +  +  
Sbjct: 242 VDNNGARHLFNIGTLEELVIA--DTMQLANIRGISRLTNLKCLELNSTDIDDSCVRRICA 299

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLE 212
            +KL  L++  CN I D+   P+S L  L+ L + SC  +T  GI  L  L +L +L+L 
Sbjct: 300 CVKLFKLSVSECNNIMDA--TPISQLAALEELNLNSCYHIT-KGIGTLGMLLRLRVLDLS 356

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRC-QLSD---------------DGCEKFSK------ 250
           G PV    L  L   GSL  LNL+ C QL+D               +GC + ++      
Sbjct: 357 GAPVEDNFLKDLCDCGSLERLNLSYCIQLTDINPLSNAAATEELNLNGCRRITRGMGVVW 416

Query: 251 -IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGD----EGLVNLTGLCNLKC 304
            +  L+VL++    +++  L  +     L  ++LD+C G GD      +V L  L   KC
Sbjct: 417 VLPKLRVLHMKDMHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTLLSSIVTLEELNIQKC 476

Query: 305 LELSDTQVGSSG-LRHLSGLTN---------LESINLSFTGISDGSLRKLAGLSSLKSLN 354
           +++  + VG  G L +L  LT             +N+    IS      +    SL  LN
Sbjct: 477 VDII-SGVGCLGTLPYLVYLTWCGLPWYTTVPRVLNIKEAHISSLDFTGICASKSLLQLN 535

Query: 355 LDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
           +++  IT  + + AL ++  L  L L G    D+    L N   L+ L++ G    +  +
Sbjct: 536 MES--ITGLSNVEALANILTLEKLSLLGCNGIDAVIGCLGNPPQLKMLDLSGTNTDNESL 593

Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           + +    ++  LNLS    +T+  +  IS L  L  LN+S+    +AG   L
Sbjct: 594 RSLCLSQTMVSLNLSHCWKMTN--MSHISSLEALNELNLSDCFEINAGWEAL 643



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 121/495 (24%), Positives = 190/495 (38%), Gaps = 112/495 (22%)

Query: 64   LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD----------------------GGLEH 101
            LS + + D  + ++ +C +L +L+  FC  I+D                       G+E 
Sbjct: 868  LSNTRINDENIRYVSECKSLNTLNLAFCKDITDVTALSKITMLEELNLDCCHNIRKGIET 927

Query: 102  LRGLSNLTSLSFR--------RNNAIT------------AQG-MKAFAGLIN-------- 132
            L  L     LS +        RNN  +            +QG      G+++        
Sbjct: 928  LGKLPKARILSMKECYMETDMRNNVPSLGIVSHLNSWKASQGTYPKHEGMLHGDGYAQQC 987

Query: 133  --------LVKLDLERCTRIHGGLVNLKGLMKLESL------NIKWCNCITDSDMKPLSG 178
                    LVKL+LER      G +++K L  + +L      + +   CI      P   
Sbjct: 988  SILGNSKSLVKLNLERSM----GFISVKALSNIATLEELVLDHAQEVCCIPSFSCLPRLR 1043

Query: 179  LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
            + NLK   I+   VT   I+  K L+ L   NL  C      +  LS+L +L  LN++ C
Sbjct: 1044 VLNLKYTDIN-GDVT-KNISESKSLRSL---NLSHCKWVTD-ISVLSSLSTLEELNISEC 1097

Query: 239  QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
            +    G E   K+  L+V  L   +IT + +V L     L  L    C    E L ++T 
Sbjct: 1098 EQIRKGWESLGKLPLLRVAILSDTKITAKDIVCLSSCKTLVKLKFFRC----EELSDVTV 1153

Query: 299  LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI---------------------- 336
            +  ++ LE    +  S GL+ L+    L  +    +                        
Sbjct: 1154 VYKIQSLEELIVKNCSDGLKGLNAPGTLPRLRFFASAKCERMLLVHSHGCVFLLLRNVRG 1213

Query: 337  SDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
            SD S+  +    SL  L ++    +TDT    L+ +T L  L L        G   L   
Sbjct: 1214 SDISVESIGTSKSLVRLTIEVGEDLTDT--TPLSDITSLEELSLRECGDNLGGVGTLEKL 1271

Query: 396  KNLRSLEICGGGLTDAGVKHIKDL---SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
              L+SL++   GL+D     + D+    S+T LNLS N  LTD  +  IS LT L  LN+
Sbjct: 1272 PRLKSLDL---GLSDISNSTLNDICLSRSITSLNLSNNYELTD--ISHISNLTALEELNL 1326

Query: 453  SNSRITSAGLRHLNH 467
                  ++G   L+ 
Sbjct: 1327 RGCYHITSGWEALSE 1341


>gi|340057619|emb|CCC51965.1| conserved hypothetical protein [Trypanosoma vivax Y486]
          Length = 872

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 162/340 (47%), Gaps = 37/340 (10%)

Query: 68  DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
            +TD GL+ ++ C++LQ L  + C+++    +  L  L  L +L+  RN  + ++G K  
Sbjct: 288 PITDEGLLPVRKCTSLQHLTLDNCVRLR--SINCLGSLHRLHTLTVSRNR-MPSEGFKGL 344

Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
           A L  L  L      RI   L ++ G+  L  L++   N +TD     L+  + L+ L++
Sbjct: 345 ANLRGLEVLRFAVLNRILT-LESIAGIQCLRELDLTD-NWLTDEGCAFLAHCSQLEHLKL 402

Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
           + C  V+D  + +++ L  L  L+L    V    LDSL +  SL  L+L  C+       
Sbjct: 403 AYCRSVSD--VRWVRALTSLQTLDLSYTSVLNCFLDSLRSCSSLEELSLAYCK------- 453

Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
                    V+++ F          + GL  L+SL++    + + GL ++     L  L 
Sbjct: 454 --------DVVDISF----------VVGLNCLKSLDVSGTCVDESGLSSVGKCPALTNLS 495

Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGL 365
           L + +   +GL+ +  L  L ++N   TG+ DG++  +     L+ L+  +   +TD  +
Sbjct: 496 LRECR-QVAGLKFVGALKQLINLNAEGTGMLDGNIDHITCCQKLEVLSFRNCPFLTD--V 552

Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
             L  L GL  LDL GA +TD G + L +  +L S+++ G
Sbjct: 553 RCLKDLGGLKALDLAGAYVTDEGVSTLSHCTSLESIDVSG 592



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 118/471 (25%), Positives = 196/471 (41%), Gaps = 85/471 (18%)

Query: 33  LQDLCLGQYPGVND-KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
           L+ L L     V+D +W+  +    +SL ++DLS + V +  L  L+ CS+L+ L   +C
Sbjct: 397 LEHLKLAYCRSVSDVRWVRAL----TSLQTLDLSYTSVLNCFLDSLRSCSSLEELSLAYC 452

Query: 92  IQISD----------------------GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
             + D                       GL  +     LT+LS R    +   G+K    
Sbjct: 453 KDVVDISFVVGLNCLKSLDVSGTCVDESGLSSVGKCPALTNLSLRECRQVA--GLKFVGA 510

Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
           L  L+ L+ E    + G + ++    KLE L+ +  NC   +D++ L  L  LK+L ++ 
Sbjct: 511 LKQLINLNAEGTGMLDGNIDHITCCQKLEVLSFR--NCPFLTDVRCLKDLGGLKALDLAG 568

Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRCQ----LSDD 243
           + VTD G++ L     L  +++ GC +      L  L+ L ++    +N       L   
Sbjct: 569 AYVTDEGVSTLSHCTSLESIDVSGCCLITHFGFLIGLTKLRNVVANGMNVVNVDGLLKSP 628

Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL--ESLNLDSCGIGD--EGLVNLTGL 299
             E+ S + S ++  +G         V    LT L  E+ N+ + GI    EG  +L  L
Sbjct: 629 SMERVSLVESRRLSFVGH--------VAAARLTELSVENSNISNVGINAVLEGCYSLQRL 680

Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DAR 358
              +C  +SD       L+ +S L  L+ + L  T +S  S+ ++A   +L+ L + D  
Sbjct: 681 SLQQCPAISD-------LQGVSLLPKLQELLLRSTAVSRESVAQIAACENLRRLQISDCA 733

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
            +TD  +  L SL  L  LDL    +T                          GVK +  
Sbjct: 734 DVTDVNI--LCSLQSLVDLDLSKTNVTT------------------------GGVKGLAQ 767

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
            S+L  LNLS +C      +  +  L  L  L +  + +T  G+  L H R
Sbjct: 768 CSALKKLNLS-DCRFVTN-INCLGKLPVLRELYLCRTSVTDRGIAGLQHCR 816



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 121/272 (44%), Gaps = 50/272 (18%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L ++DL+G+ VTD G+  L  C++L+S+D + C  I+  G   L GL+ L ++     N 
Sbjct: 561 LKALDLAGAYVTDEGVSTLSHCTSLESIDVSGCCLITHFGF--LIGLTKLRNVVANGMNV 618

Query: 119 ITAQGM----------------KAFAGLI---NLVKLDLERCTRIHGGL-VNLKGLMKLE 158
           +   G+                 +F G +    L +L +E     + G+   L+G   L+
Sbjct: 619 VNVDGLLKSPSMERVSLVESRRLSFVGHVAAARLTELSVENSNISNVGINAVLEGCYSLQ 678

Query: 159 SLNIKWCNCITD----------------------SDMKPLSGLTNLKSLQIS-CSKVTDS 195
            L+++ C  I+D                        +  ++   NL+ LQIS C+ VTD 
Sbjct: 679 RLSLQQCPAISDLQGVSLLPKLQELLLRSTAVSRESVAQIAACENLRRLQISDCADVTDV 738

Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSL 254
            I  L  LQ L  L+L    VT   +  L+   +L  LNL+ C+ +++  C    K+  L
Sbjct: 739 NI--LCSLQSLVDLDLSKTNVTTGGVKGLAQCSALKKLNLSDCRFVTNINC--LGKLPVL 794

Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
           + L L    +TD  +  L+    LE+L L  C
Sbjct: 795 RELYLCRTSVTDRGIAGLQHCRQLETLTLTKC 826


>gi|345480032|ref|XP_003424075.1| PREDICTED: F-box/LRR-repeat protein 14-like [Nasonia vitripennis]
          Length = 567

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 156/320 (48%), Gaps = 56/320 (17%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
            +    L SL+ + C  +SD G+                N+A++    + F+   +L +L
Sbjct: 260 FRGIPKLHSLNLSGCFNMSDAGI----------------NSALS----QPFS---SLTQL 296

Query: 137 DLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQI-SCSKV 192
           +L  C  I    +    + L  LE+L++  C  IT+S +  ++ GL +L+ L + SC  V
Sbjct: 297 NLSYCKHITDASLGKIAQCLKNLETLDLGGCTNITNSGLHVIAWGLKSLRRLDVKSCWHV 356

Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI 251
           +D GI YL G+      NL                 +L +L L   Q L+D+G    S +
Sbjct: 357 SDQGIGYLAGINSDAGGNL-----------------ALEHLGLQDVQRLTDEGLRSIS-L 398

Query: 252 G---SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLE 306
           G   SL+ +NL F  +ITD  + H+  +T+L  L+L +C I +  + NL  G   +  L+
Sbjct: 399 GLATSLQSINLSFCVQITDNGMKHIAKITSLRELDLRNCDISESAMANLAEGGSRISSLD 458

Query: 307 LSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSS-LKSLNL-DARQITD 362
           +S   +VG   L+H+S GL NL+S+ LS   ISD  + K+A     L++L +    ++TD
Sbjct: 459 VSFCDKVGDQALQHISQGLFNLKSLGLSACPISDEGIDKIAKTQQDLETLLIGQCSRLTD 518

Query: 363 TG-LAALTSLTGLTHLDLFG 381
              L  + S+  L  +DL+G
Sbjct: 519 KSILTIVESMPRLRSIDLYG 538



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 152/315 (48%), Gaps = 61/315 (19%)

Query: 57  SSLLSVDLSG-SDVTDSGLIHLKDC-SNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSF 113
           SSL  ++LS    +TD+ L  +  C  NL++LD   C  I++ GL  +  GL +L  L  
Sbjct: 291 SSLTQLNLSYCKHITDASLGKIAQCLKNLETLDLGGCTNITNSGLHVIAWGLKSLRRLDV 350

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
           +    ++ QG+   AG+ +                 +  G + LE L ++    +TD  +
Sbjct: 351 KSCWHVSDQGIGYLAGINS-----------------DAGGNLALEHLGLQDVQRLTDEGL 393

Query: 174 KPLS-GL-TNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           + +S GL T+L+S+ +S C ++TD+G+ ++  +  L  L+L  C ++ + + +L+  G  
Sbjct: 394 RSISLGLATSLQSINLSFCVQITDNGMKHIAKITSLRELDLRNCDISESAMANLAEGG-- 451

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGI 288
                             S+I SL V    F +++ D+ L H+ +GL NL+SL L +C I
Sbjct: 452 ------------------SRISSLDV---SFCDKVGDQALQHISQGLFNLKSLGLSACPI 490

Query: 289 GDEGL-------VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGS 340
            DEG+        +L  L   +C  L+D  +    L  +  +  L SI+L   T IS  S
Sbjct: 491 SDEGIDKIAKTQQDLETLLIGQCSRLTDKSI----LTIVESMPRLRSIDLYGCTKISKFS 546

Query: 341 LRKLAGLSSLKSLNL 355
           L K+  L  L SLNL
Sbjct: 547 LEKILKL-PLISLNL 560



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 136/300 (45%), Gaps = 70/300 (23%)

Query: 200 LKGLQKLTLLNLEGC-PVTAACLDSL--SALGSLFYLNLNRCQ-LSDDGCEKFSK-IGSL 254
            +G+ KL  LNL GC  ++ A ++S       SL  LNL+ C+ ++D    K ++ + +L
Sbjct: 260 FRGIPKLHSLNLSGCFNMSDAGINSALSQPFSSLTQLNLSYCKHITDASLGKIAQCLKNL 319

Query: 255 KVLNLG-FNEITDECL-VHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN-------LKC 304
           + L+LG    IT+  L V   GL +L  L++ SC  + D+G+  L G+ +       L+ 
Sbjct: 320 ETLDLGGCTNITNSGLHVIAWGLKSLRRLDVKSCWHVSDQGIGYLAGINSDAGGNLALEH 379

Query: 305 LELSDTQ-VGSSGLRHLS-GL-TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
           L L D Q +   GLR +S GL T+L+SINLSF                         QIT
Sbjct: 380 LGLQDVQRLTDEGLRSISLGLATSLQSINLSF-----------------------CVQIT 416

Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYL---------------------------RN 394
           D G+  +  +T L  LDL    I++S  A L                           + 
Sbjct: 417 DNGMKHIAKITSLRELDLRNCDISESAMANLAEGGSRISSLDVSFCDKVGDQALQHISQG 476

Query: 395 FKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNV 452
             NL+SL +    ++D G+  I K    L  L + Q   LTDK+ L ++  +  L S+++
Sbjct: 477 LFNLKSLGLSACPISDEGIDKIAKTQQDLETLLIGQCSRLTDKSILTIVESMPRLRSIDL 536



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 106/212 (50%), Gaps = 23/212 (10%)

Query: 273 KGLTNLESLNLD-SCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
           +G+  ++ L+L    G+GD   G+  L  L    C  +SD  + S+  +  S LT L   
Sbjct: 240 RGIKRVQVLSLTMRRGLGDVFRGIPKLHSLNLSGCFNMSDAGINSALSQPFSSLTQL--- 296

Query: 330 NLSF-TGISDGSLRKLAG-LSSLKSLNLDA-RQITDTGLAALT-SLTGLTHLDLFG-ARI 384
           NLS+   I+D SL K+A  L +L++L+L     IT++GL  +   L  L  LD+     +
Sbjct: 297 NLSYCKHITDASLGKIAQCLKNLETLDLGGCTNITNSGLHVIAWGLKSLRRLDVKSCWHV 356

Query: 385 TDSGAAYLRNFK-----NLRSLEICG----GGLTDAGVKHIKD--LSSLTLLNLSQNCNL 433
           +D G  YL         NL +LE  G      LTD G++ I     +SL  +NLS    +
Sbjct: 357 SDQGIGYLAGINSDAGGNL-ALEHLGLQDVQRLTDEGLRSISLGLATSLQSINLSFCVQI 415

Query: 434 TDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
           TD  ++ I+ +T L  L++ N  I+ + + +L
Sbjct: 416 TDNGMKHIAKITSLRELDLRNCDISESAMANL 447


>gi|46445832|ref|YP_007197.1| F-box protein [Candidatus Protochlamydia amoebophila UWE25]
 gi|46399473|emb|CAF22922.1| putative F-box protein [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 329

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 2/133 (1%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           +TD+ L+ LK+C NL+ L    C  ++D GL HL  L  L  L+    + +T  G+    
Sbjct: 197 LTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEALKHLNLSECDNLTDAGLAHLT 256

Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
            LI L  LDL+ C ++   GL  L+ L+ L+ LN+K C+ +TD  +  L  L  L+ L +
Sbjct: 257 LLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGCDNLTDIGLAHLRPLVALQHLDL 316

Query: 188 S-CSKVTDSGIAY 199
             C+ +TD+G+A+
Sbjct: 317 DGCNNLTDAGLAH 329



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 84/145 (57%), Gaps = 5/145 (3%)

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
           ++E+++      +TD+ +  L    NLK LQ+ +C  +TD G+A+L  L+ L  LNL  C
Sbjct: 185 EIEAIHFSDNVYLTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEALKHLNLSEC 244

Query: 215 P-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 271
             +T A L  L+ L +L YL+L  C +L+D G  +   + +L+ LNL G + +TD  L H
Sbjct: 245 DNLTDAGLAHLTLLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGCDNLTDIGLAH 304

Query: 272 LKGLTNLESLNLDSC-GIGDEGLVN 295
           L+ L  L+ L+LD C  + D GL +
Sbjct: 305 LRPLVALQHLDLDGCNNLTDAGLAH 329



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 75/137 (54%), Gaps = 5/137 (3%)

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSL 341
           D+  + D  L+ L    NLK L+L   + +   GL HL+ L  L+ +NLS    ++D  L
Sbjct: 193 DNVYLTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEALKHLNLSECDNLTDAGL 252

Query: 342 RKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLR 399
             L  L +L+ L+L    ++TD GLA L  L  L HL+L G   +TD G A+LR    L+
Sbjct: 253 AHLTLLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGCDNLTDIGLAHLRPLVALQ 312

Query: 400 SLEICG-GGLTDAGVKH 415
            L++ G   LTDAG+ H
Sbjct: 313 HLDLDGCNNLTDAGLAH 329



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 80/153 (52%), Gaps = 7/153 (4%)

Query: 317 LRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGL 374
           L H S    +E+I+ S    ++D  L  L    +LK L L A R +TD GLA L  L  L
Sbjct: 179 LNHFSN--EIEAIHFSDNVYLTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEAL 236

Query: 375 THLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCN 432
            HL+L     +TD+G A+L     L+ L++ G   LTDAG+  ++ L +L  LNL    N
Sbjct: 237 KHLNLSECDNLTDAGLAHLTLLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGCDN 296

Query: 433 LTDKTLELISGLTGLVSLNVSN-SRITSAGLRH 464
           LTD  L  +  L  L  L++   + +T AGL H
Sbjct: 297 LTDIGLAHLRPLVALQHLDLDGCNNLTDAGLAH 329



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 5/148 (3%)

Query: 102 LRGLSN-LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLES 159
           L   SN + ++ F  N  +T   +       NL  L L+ C  +   GL +L  L  L+ 
Sbjct: 179 LNHFSNEIEAIHFSDNVYLTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEALKH 238

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 217
           LN+  C+ +TD+ +  L+ L  L+ L +  C+K+TD+G+A L+ L  L  LNL+GC  +T
Sbjct: 239 LNLSECDNLTDAGLAHLTLLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGCDNLT 298

Query: 218 AACLDSLSALGSLFYLNLNRC-QLSDDG 244
              L  L  L +L +L+L+ C  L+D G
Sbjct: 299 DIGLAHLRPLVALQHLDLDGCNNLTDAG 326



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 57  SSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
            +L  ++LS  D +TD+GL HL     LQ LD   C +++D GL  LR L  L  L+ + 
Sbjct: 234 EALKHLNLSECDNLTDAGLAHLTLLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKG 293

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI 144
            + +T  G+     L+ L  LDL+ C  +
Sbjct: 294 CDNLTDIGLAHLRPLVALQHLDLDGCNNL 322



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 2/84 (2%)

Query: 384 ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
           +TD+    L+N KNL+ L++     LTD G+ H+  L +L  LNLS+  NLTD  L  ++
Sbjct: 197 LTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEALKHLNLSECDNLTDAGLAHLT 256

Query: 443 GLTGLVSLNVSN-SRITSAGLRHL 465
            L  L  L++   +++T AGL  L
Sbjct: 257 LLIALQYLDLKGCAKLTDAGLARL 280


>gi|260788598|ref|XP_002589336.1| hypothetical protein BRAFLDRAFT_77788 [Branchiostoma floridae]
 gi|229274513|gb|EEN45347.1| hypothetical protein BRAFLDRAFT_77788 [Branchiostoma floridae]
          Length = 1470

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 130/261 (49%), Gaps = 25/261 (9%)

Query: 176  LSGLTNLKSLQISCSKVTDSGIAYL-KGL---QKLTLLNLEGCPVTAACLDSLSALGSLF 231
            +  L+ L+ + +S + ++D  +  L +GL   QKL  +NL    ++    D L  L SL 
Sbjct: 1116 IQHLSLLEEIDLSHNVISDEAVPSLAEGLGSCQKLKKVNLSHNKLSGRG-DFLPPLPSLE 1174

Query: 232  YLNLNRCQLSDDGCEKFSK-IGS---LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
             ++L+   +SD+     ++ +GS   LK +NL  N+++D     L  L NLE ++L    
Sbjct: 1175 EIDLSYNAISDEAVPGLAEGLGSCQNLKKVNLSHNKLSDRGDF-LPPLPNLEEIDLSHNI 1233

Query: 288  IGDEGLVNLTGLC----NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
            I DE +  L G      NLK ++LS  ++   G   L  L NLE I+LS+  I D +   
Sbjct: 1234 ISDEAVPGLAGSLGSCQNLKKVDLSHNKLSDRG-HFLPPLPNLEEIDLSYNAIGDEAEPG 1292

Query: 344  LA-GLSS---LKSLNLDARQITDTG--LAALTSLTGLTHLDLFGARITDSG----AAYLR 393
            LA GL S   LK +NL   +++D G   AA   L  LTH+D++    +D      AA+L+
Sbjct: 1293 LAEGLGSCQKLKKVNLSHNKLSDVGELTAAFIDLPFLTHVDIYNNSFSDESLPTIAAWLK 1352

Query: 394  NFKNLRSLEICGGGLTDAGVK 414
                +  + + G   +  GV+
Sbjct: 1353 VRTEVERVWMRGNRFSAEGVR 1373



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 147/320 (45%), Gaps = 33/320 (10%)

Query: 173  MKPLSGLTNLKSLQISCSKVTDSG---IAYLKG----LQKLTLLNLEGCPVTAACLDSLS 225
            +K L  L NL+ L +  S   + G   I+ L G    L+KL L +     +       + 
Sbjct: 1058 LKFLPQLPNLQELALCVSCQGEEGAEHISQLYGVRHVLKKLKLKDWSLDSIMRLSTQMIQ 1117

Query: 226  ALGSLFYLNLNRCQLSDDGCEKFSK-IGS---LKVLNLGFNEITDECLVHLKGLTNLESL 281
             L  L  ++L+   +SD+     ++ +GS   LK +NL  N+++      L  L +LE +
Sbjct: 1118 HLSLLEEIDLSHNVISDEAVPSLAEGLGSCQKLKKVNLSHNKLSGRGDF-LPPLPSLEEI 1176

Query: 282  NLDSCGIGDEGLVNLT---GLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
            +L    I DE +  L    G C NLK + LS  ++   G   L  L NLE I+LS   IS
Sbjct: 1177 DLSYNAISDEAVPGLAEGLGSCQNLKKVNLSHNKLSDRG-DFLPPLPNLEEIDLSHNIIS 1235

Query: 338  DGSLRKLAG----LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG----A 389
            D ++  LAG      +LK ++L   +++D G   L  L  L  +DL    I D      A
Sbjct: 1236 DEAVPGLAGSLGSCQNLKKVDLSHNKLSDRG-HFLPPLPNLEEIDLSYNAIGDEAEPGLA 1294

Query: 390  AYLRNFKNLRSLEICGGGLTDAG--VKHIKDLSSLTLLNLSQNCNLTDKTLELISGL--- 444
              L + + L+ + +    L+D G       DL  LT +++  N + +D++L  I+     
Sbjct: 1295 EGLGSCQKLKKVNLSHNKLSDVGELTAAFIDLPFLTHVDIYNN-SFSDESLPTIAAWLKV 1353

Query: 445  -TGLVSLNVSNSRITSAGLR 463
             T +  + +  +R ++ G+R
Sbjct: 1354 RTEVERVWMRGNRFSAEGVR 1373


>gi|290979200|ref|XP_002672322.1| predicted protein [Naegleria gruberi]
 gi|284085898|gb|EFC39578.1| predicted protein [Naegleria gruberi]
          Length = 318

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 102/214 (47%), Gaps = 3/214 (1%)

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
           ++ LNL  +EIT   +     L NL+ L+L S  I  EG   L+ L NL  L L+D  + 
Sbjct: 1   MESLNLSNSEITSSGISQFGILKNLQELDLSSNLINSEGANYLSSLYNLTSLALNDNSIT 60

Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
             GLR+ S LTNL  + L    I       L+  +++K L L    I D GL    +L  
Sbjct: 61  GEGLRNFSNLTNLTELFLDNNNIGSVGANYLSSNTNIKFLTLSNNSIADEGLENFGNLKS 120

Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS-SLTLLNLSQNCN 432
           L HL+L    +   G  YL   K L+ L+I    LTD  +    D   S+  L+LS+N  
Sbjct: 121 LIHLNLNFNNV-QRGLIYLSECKLLKQLDIQHNNLTDQELIDFFDKELSIEELDLSENKK 179

Query: 433 LTDKTLELISGLTGLVSLNV-SNSRITSAGLRHL 465
           L+ K+ + I     L  LN+ SN ++    L HL
Sbjct: 180 LSGKSFKNICKQRKLSILNIGSNPKLGDLSLSHL 213



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 113/232 (48%), Gaps = 4/232 (1%)

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           LNL+  +++  G  +F  + +L+ L+L  N I  E   +L  L NL SL L+   I  EG
Sbjct: 4   LNLSNSEITSSGISQFGILKNLQELDLSSNLINSEGANYLSSLYNLTSLALNDNSITGEG 63

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
           L N + L NL  L L +  +GS G  +LS  TN++ + LS   I+D  L     L SL  
Sbjct: 64  LRNFSNLTNLTELFLDNNNIGSVGANYLSSNTNIKFLTLSNNSIADEGLENFGNLKSLIH 123

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRNFKNLRSLEIC-GGGLTD 410
           LNL+   +   GL  L+    L  LD+    +TD     +     ++  L++     L+ 
Sbjct: 124 LNLNFNNV-QRGLIYLSECKLLKQLDIQHNNLTDQELIDFFDKELSIEELDLSENKKLSG 182

Query: 411 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
              K+I     L++LN+  N  L D +L  ++ L  L++L  +N  IT  GL
Sbjct: 183 KSFKNICKQRKLSILNIGSNPKLGDLSLSHLASL-NLLTLRANNCGITDKGL 233



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 112/238 (47%), Gaps = 16/238 (6%)

Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
           LNL    +T++ +     L +L  L+L+   ++ +G    S + +L  L L  N IT E 
Sbjct: 4   LNLSNSEITSSGISQFGILKNLQELDLSSNLINSEGANYLSSLYNLTSLALNDNSITGEG 63

Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
           L +   LTNL  L LD+  IG  G   L+   N+K L LS+  +   GL +   L +L  
Sbjct: 64  LRNFSNLTNLTELFLDNNNIGSVGANYLSSNTNIKFLTLSNNSIADEGLENFGNLKSLIH 123

Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT-GLTHLDLFGARITDS 387
           +NL+F  +  G L  L+    LK L++    +TD  L         +  LDL     +++
Sbjct: 124 LNLNFNNVQRG-LIYLSECKLLKQLDIQHNNLTDQELIDFFDKELSIEELDL-----SEN 177

Query: 388 GAAYLRNFKNL---RSLEICGGG----LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
                ++FKN+   R L I   G    L D  + H+  L+ LTL   + NC +TDK L
Sbjct: 178 KKLSGKSFKNICKQRKLSILNIGSNPKLGDLSLSHLASLNLLTL--RANNCGITDKGL 233



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 122/241 (50%), Gaps = 16/241 (6%)

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           S++LS S++T SG+       NLQ LD +  + I+  G  +L  L NLTSL+   +N+IT
Sbjct: 3   SLNLSNSEITSSGISQFGILKNLQELDLSSNL-INSEGANYLSSLYNLTSLAL-NDNSIT 60

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC----NCITDSDMKPL 176
            +G++ F+ L NL +L L+       G   L       + NIK+     N I D  ++  
Sbjct: 61  GEGLRNFSNLTNLTELFLDNNNIGSVGANYLSS-----NTNIKFLTLSNNSIADEGLENF 115

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNL 235
             L +L  L ++ + V   G+ YL   + L  L+++   +T    +D      S+  L+L
Sbjct: 116 GNLKSLIHLNLNFNNV-QRGLIYLSECKLLKQLDIQHNNLTDQELIDFFDKELSIEELDL 174

Query: 236 NRC-QLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +   +LS    +   K   L +LN+G N ++ D  L HL  L NL +L  ++CGI D+GL
Sbjct: 175 SENKKLSGKSFKNICKQRKLSILNIGSNPKLGDLSLSHLASL-NLLTLRANNCGITDKGL 233

Query: 294 V 294
           V
Sbjct: 234 V 234



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 106/239 (44%), Gaps = 14/239 (5%)

Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
           +ESLN+     IT S +     L NL+ L +S + +   G  YL  L  LT L L    +
Sbjct: 1   MESLNLSNSE-ITSSGISQFGILKNLQELDLSSNLINSEGANYLSSLYNLTSLALNDNSI 59

Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
           T   L + S L +L  L L+   +   G    S   ++K L L  N I DE L +   L 
Sbjct: 60  TGEGLRNFSNLTNLTELFLDNNNIGSVGANYLSSNTNIKFLTLSNNSIADEGLENFGNLK 119

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-----RHLSGLTNLESINL 331
           +L  LNL+   +   GL+ L+    LK L++    +    L     + LS    +E ++L
Sbjct: 120 SLIHLNLNFNNV-QRGLIYLSECKLLKQLDIQHNNLTDQELIDFFDKELS----IEELDL 174

Query: 332 SFT-GISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSG 388
           S    +S  S + +     L  LN+ +  ++ D  L+ L SL  LT L      ITD G
Sbjct: 175 SENKKLSGKSFKNICKQRKLSILNIGSNPKLGDLSLSHLASLNLLT-LRANNCGITDKG 232


>gi|85679222|gb|ABC72027.1| InlA [Listeria monocytogenes]
          Length = 791

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 115/374 (30%), Positives = 172/374 (45%), Gaps = 54/374 (14%)

Query: 74  LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
           +  LKD + L  +  N   QI+D  +  L  L+NLT L+   NN IT   + A   L NL
Sbjct: 112 ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDALKNLTNL 165

Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
            +L++   T     +  L GL  L+ L+    N +TD  +KPL+ LT L+ L IS +KV+
Sbjct: 166 NRLEITGNTI--SDISVLSGLTSLQQLSF--GNQVTD--LKPLANLTTLERLDISSNKVS 219

Query: 194 D-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
           D S +A L  L++L   N +   +T      L  L +L  L+LN  QL D G    + + 
Sbjct: 220 DISVLAKLTNLERLIATNNQISDITP-----LGILTNLDELSLNGNQLKDIGT--LASLT 272

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
           +L  L++  N+I++  L  L GLT L  L L    I +  +  + GL  L  LEL + Q+
Sbjct: 273 NLTSLDVANNQISN--LAPLSGLTKLTELELGYNQISN--ISPIEGLTALTSLELHENQL 328

Query: 313 GSSGLRHLSGLTNLESINLSFTGISD----GSLRK----------------LAGLSSLKS 352
               +  +S L NL  + L F  ISD     SL K                LA L+++  
Sbjct: 329 --EDISPISNLKNLTYLALYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINW 386

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGG 406
           L+    QI+D  L  L +LT ++ L L     T+    Y  N       KN+    I   
Sbjct: 387 LSAAHNQISD--LTPLANLTRISELGLNDQAWTNPPVNYKTNVSIPNTVKNVTGALIAPA 444

Query: 407 GLTDAGVKHIKDLS 420
            ++D G     D++
Sbjct: 445 TISDGGSYAEPDIT 458



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 117/237 (49%), Gaps = 39/237 (16%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           DG E    + +L  +N GFN++TD  +  LK LT L  + +++  I D  +  L  L NL
Sbjct: 91  DGLEY---LNNLTQINFGFNQLTD--ITPLKDLTKLVDIVMNNNQITD--ISPLANLTNL 143

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
             L L + Q+  + +  L  LTNL  + ++   ISD S+  L+GL+SL+ L+    Q+TD
Sbjct: 144 TGLTLFNNQI--TDIDALKNLTNLNRLEITGNTISDISV--LSGLTSLQQLSF-GNQVTD 198

Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
             L  L +LT L  LD+   +++D S  A L N +                   NL  L 
Sbjct: 199 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLERLIATNNQISDITPLGILTNLDELS 256

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
           + G  L D G   +  L++LT L+++ N       L  +SGLT L  L +  ++I++
Sbjct: 257 LNGNQLKDIGT--LASLTNLTSLDVANNQ---ISNLAPLSGLTKLTELELGYNQISN 308


>gi|428225640|ref|YP_007109737.1| hypothetical protein GEI7407_2206 [Geitlerinema sp. PCC 7407]
 gi|427985541|gb|AFY66685.1| leucine-rich repeat-containing protein [Geitlerinema sp. PCC 7407]
          Length = 504

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 120/410 (29%), Positives = 165/410 (40%), Gaps = 105/410 (25%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL-----SFRRNNAITAQGMKAFAGLI 131
           L D S L SL     + + +  L  LR LS+L +L     S+     +T  G       +
Sbjct: 86  LTDLSPLVSLPQLTGLSLYNSSLSDLRPLSSLPNLRALDLSYANLTDVTVLGTLGTLQAL 145

Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
           NL      R   +   L  L+GL +L +L + W    T +D+  L  L NL  L +S S+
Sbjct: 146 NL------RGNPVRD-LRPLQGLQRLHTLTLGWS---TVTDLSTLPTLPNLHQLDLSGSQ 195

Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL-------------------GSLFY 232
           V D  I  L    +L  LNL    +++  L ++ +L                   G L  
Sbjct: 196 VGD--IRSLAPQPRLETLNLSANRISSIALPAMPSLRSLDLENNALTRVTIPASMGKLES 253

Query: 233 LNL-----------------NRCQLSDDGCEKFSKIGS---LKVLNLGFNEITD------ 266
           LNL                  R  L+ +   +   I S   L+ L+L FN+ITD      
Sbjct: 254 LNLANNAIASLQFGGQIPALRRLSLASNQLTEVRAIASQPQLQELDLSFNQITDLGPLAS 313

Query: 267 ---------------ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
                            L  L GLT L++L+L    I D  +  L GL NL+ L LS  Q
Sbjct: 314 LGAIRVLKISGNRPISDLRPLAGLTTLQALDLSEASIRD--ITPLRGLRNLETLVLSGNQ 371

Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD--------- 362
           +    L  LSGL  L  + +    ISD  LR +A L SL++L LD+ +IT          
Sbjct: 372 IQQ--LESLSGLNRLSYLAIGGNQISD--LRAIAALYSLQTLMLDSNRITSVRPLASLGQ 427

Query: 363 -----------TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
                      T  A L +LTGLT L L   RIT+  A  L    NLR L
Sbjct: 428 LKVLTLGNNQITDPAPLAALTGLTVLQLPQNRITNFDA--LATLTNLRIL 475



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 160/351 (45%), Gaps = 55/351 (15%)

Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
           GL +L  L+ L  L        + SD++PLS L NL++L +S + +TD  +  L  L  L
Sbjct: 85  GLTDLSPLVSLPQLTGLSLYNSSLSDLRPLSSLPNLRALDLSYANLTD--VTVLGTLGTL 142

Query: 207 TLLNLEGCPV--------------------TAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
             LNL G PV                    T   L +L  L +L  L+L+  Q+ D    
Sbjct: 143 QALNLRGNPVRDLRPLQGLQRLHTLTLGWSTVTDLSTLPTLPNLHQLDLSGSQVGD--IR 200

Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN--------------LDSCGIGDEG 292
             +    L+ LNL  N I+   L  +  L +L+  N              L+S  + +  
Sbjct: 201 SLAPQPRLETLNLSANRISSIALPAMPSLRSLDLENNALTRVTIPASMGKLESLNLANNA 260

Query: 293 LVNLT---GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
           + +L     +  L+ L L+  Q+  + +R ++    L+ ++LSF  I+D  L  LA L +
Sbjct: 261 IASLQFGGQIPALRRLSLASNQL--TEVRAIASQPQLQELDLSFNQITD--LGPLASLGA 316

Query: 350 LKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
           ++ L +   R I+D  L  L  LT L  LDL  A I D     LR  +NL +L + G  +
Sbjct: 317 IRVLKISGNRPISD--LRPLAGLTTLQALDLSEASIRD--ITPLRGLRNLETLVLSGNQI 372

Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
               ++ +  L+ L+ L +  N  ++D  L  I+ L  L +L + ++RITS
Sbjct: 373 QQ--LESLSGLNRLSYLAIGGN-QISD--LRAIAALYSLQTLMLDSNRITS 418



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 121/281 (43%), Gaps = 56/281 (19%)

Query: 75  IHLKDCSNLQSLDFN------FCIQISDGGLEHLRGLSN-LTSLSF-------RR----N 116
           I L    +L+SLD          I  S G LE L   +N + SL F       RR    +
Sbjct: 221 IALPAMPSLRSLDLENNALTRVTIPASMGKLESLNLANNAIASLQFGGQIPALRRLSLAS 280

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI-KWCNCITDSDMKP 175
           N +T   ++A A    L +LDL         + +L  L  L ++ + K       SD++P
Sbjct: 281 NQLTE--VRAIASQPQLQELDLS-----FNQITDLGPLASLGAIRVLKISGNRPISDLRP 333

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           L+GLT L++L +S + + D  I  L+GL+ L  L L G  +    L+SLS L  L YL +
Sbjct: 334 LAGLTTLQALDLSEASIRD--ITPLRGLRNLETLVLSGNQIQQ--LESLSGLNRLSYLAI 389

Query: 236 NRCQLSD--------------------DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
              Q+SD                          + +G LKVL LG N+ITD     L  L
Sbjct: 390 GGNQISDLRAIAALYSLQTLMLDSNRITSVRPLASLGQLKVLTLGNNQITDPA--PLAAL 447

Query: 276 TNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSS 315
           T L  L L    I + + L  LT   NL+ L L +  V   
Sbjct: 448 TGLTVLQLPQNRITNFDALATLT---NLRILGLWENPVSPP 485



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 123/286 (43%), Gaps = 53/286 (18%)

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
           L  L +L  L  L+L    LSD      S + +L+ L+L +  +TD  +  L  L  L++
Sbjct: 89  LSPLVSLPQLTGLSLYNSSLSD--LRPLSSLPNLRALDLSYANLTDVTV--LGTLGTLQA 144

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           LNL    + D  L  L GL  L  L L  + V  + L  L  L NL  ++LS  G   G 
Sbjct: 145 LNLRGNPVRD--LRPLQGLQRLHTLTLGWSTV--TDLSTLPTLPNLHQLDLS--GSQVGD 198

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSL-------TGLTHLDLFGA-------RITD 386
           +R LA    L++LNL A +I+   L A+ SL         LT + +  +        + +
Sbjct: 199 IRSLAPQPRLETLNLSANRISSIALPAMPSLRSLDLENNALTRVTIPASMGKLESLNLAN 258

Query: 387 SGAAYLR---NFKNLRSLEICGGGLT--------------DAGVKHIKDLSSLT------ 423
           +  A L+       LR L +    LT              D     I DL  L       
Sbjct: 259 NAIASLQFGGQIPALRRLSLASNQLTEVRAIASQPQLQELDLSFNQITDLGPLASLGAIR 318

Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS----AGLRHL 465
           +L +S N  ++D  L  ++GLT L +L++S + I       GLR+L
Sbjct: 319 VLKISGNRPISD--LRPLAGLTTLQALDLSEASIRDITPLRGLRNL 362


>gi|300867094|ref|ZP_07111761.1| Leucine Rich Repeat domain protein (fragment) [Oscillatoria sp. PCC
           6506]
 gi|300334925|emb|CBN56927.1| Leucine Rich Repeat domain protein (fragment) [Oscillatoria sp. PCC
           6506]
          Length = 334

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 95/282 (33%), Positives = 136/282 (48%), Gaps = 46/282 (16%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
           + LS+LT+L +  NN I+   +K    L NL  LDL         + ++K L  L  LN+
Sbjct: 81  QTLSSLTAL-YLYNNQIS--DLKPLQSLTNLTWLDLN-----DNQISDIKPLQSLTKLNV 132

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
              +    SD+KPL  LTNL SL +  +K++D     +K L+ LT L+L           
Sbjct: 133 LILHSNKISDIKPLESLTNLTSLSLYSNKISD-----IKPLESLTNLDL----------- 176

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
                     L L+  ++SD   +    +  L +L L  N+I D  +  L+ LTNL SL+
Sbjct: 177 ----------LELHNNKISD--IKPLQSLTKLNLLQLHNNQIGD--IKPLQSLTNLTSLS 222

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
           L S  I D  L  L  L NL  L+LS+ ++  S ++ L  LT L  ++LS   ISD  + 
Sbjct: 223 LYSNKISDITL--LQSLTNLTILDLSNNKI--SDIKPLEFLTKLNILDLSNNKISD--IE 276

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
            L  L+ L  L L   QI+D  +  L SLT L  L L G  I
Sbjct: 277 PLQSLTKLTILYLYNNQISD--IKTLKSLTKLMLLYLGGNSI 316



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/210 (34%), Positives = 112/210 (53%), Gaps = 16/210 (7%)

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
           L  L +L +L +L+LN  Q+SD   +    +  L VL L  N+I+D  +  L+ LTNL S
Sbjct: 99  LKPLQSLTNLTWLDLNDNQISD--IKPLQSLTKLNVLILHSNKISD--IKPLESLTNLTS 154

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           L+L S  I D  +  L  L NL  LEL + ++  S ++ L  LT L  + L    I  G 
Sbjct: 155 LSLYSNKISD--IKPLESLTNLDLLELHNNKI--SDIKPLQSLTKLNLLQLHNNQI--GD 208

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
           ++ L  L++L SL+L + +I+D  L  L SLT LT LDL   +I+D     L     L  
Sbjct: 209 IKPLQSLTNLTSLSLYSNKISDITL--LQSLTNLTILDLSNNKISDIKP--LEFLTKLNI 264

Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           L++    ++D  ++ ++ L+ LT+L L  N
Sbjct: 265 LDLSNNKISD--IEPLQSLTKLTILYLYNN 292



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 114/215 (53%), Gaps = 18/215 (8%)

Query: 245 CEKFSK-IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
           CE  ++ + SL  L L  N+I+D  L  L+ LTNL  L+L+   I D  +  L  L  L 
Sbjct: 76  CEAANQTLSSLTALYLYNNQISD--LKPLQSLTNLTWLDLNDNQISD--IKPLQSLTKLN 131

Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
            L L   ++  S ++ L  LTNL S++L    ISD  ++ L  L++L  L L   +I+D 
Sbjct: 132 VLILHSNKI--SDIKPLESLTNLTSLSLYSNKISD--IKPLESLTNLDLLELHNNKISD- 186

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
            +  L SLT L  L L   +I D     L++  NL SL +    ++D  +  ++ L++LT
Sbjct: 187 -IKPLQSLTKLNLLQLHNNQIGDIKP--LQSLTNLTSLSLYSNKISDITL--LQSLTNLT 241

Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
           +L+LS N     K LE    LT L  L++SN++I+
Sbjct: 242 ILDLSNNKISDIKPLEF---LTKLNILDLSNNKIS 273



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 109/230 (47%), Gaps = 30/230 (13%)

Query: 76  HLKDCSNLQSL-DFNFCI----QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
            + D   LQSL   N  I    +ISD  ++ L  L+NLTSLS   N       +K    L
Sbjct: 117 QISDIKPLQSLTKLNVLILHSNKISD--IKPLESLTNLTSLSLYSNK---ISDIKPLESL 171

Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
            NL  L+L      +  + ++K L  L  LN+   +     D+KPL  LTNL SL +  +
Sbjct: 172 TNLDLLELH-----NNKISDIKPLQSLTKLNLLQLHNNQIGDIKPLQSLTNLTSLSLYSN 226

Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
           K++D  I  L+ L  LT+L+L    ++   +  L  L  L  L+L+  ++SD   E    
Sbjct: 227 KISD--ITLLQSLTNLTILDLSNNKISD--IKPLEFLTKLNILDLSNNKISD--IEPLQS 280

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNL-------ESLNLDSCGIGDEGL 293
           +  L +L L  N+I+D  +  LK LT L        S++  +C +  E +
Sbjct: 281 LTKLTILYLYNNQISD--IKTLKSLTKLMLLYLGGNSIDTKTCPLSPESI 328



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 93/185 (50%), Gaps = 19/185 (10%)

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
           LE      C   ++ L +LT L       L + Q+  S L+ L  LTNL  ++L+   IS
Sbjct: 68  LEKAETTECEAANQTLSSLTALY------LYNNQI--SDLKPLQSLTNLTWLDLNDNQIS 119

Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
           D  ++ L  L+ L  L L + +I+D  +  L SLT LT L L+  +I+D     L +  N
Sbjct: 120 D--IKPLQSLTKLNVLILHSNKISD--IKPLESLTNLTSLSLYSNKISDIKP--LESLTN 173

Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
           L  LE+    ++D     IK L SLT LNL Q  N     ++ +  LT L SL++ +++I
Sbjct: 174 LDLLELHNNKISD-----IKPLQSLTKLNLLQLHNNQIGDIKPLQSLTNLTSLSLYSNKI 228

Query: 458 TSAGL 462
           +   L
Sbjct: 229 SDITL 233


>gi|149178243|ref|ZP_01856836.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
 gi|148842892|gb|EDL57262.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
          Length = 254

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 65/120 (54%), Gaps = 1/120 (0%)

Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
             +L   +ITDE L  L GL+ ++SLNL    +   GL  L  L  L  L L  T+V  +
Sbjct: 58  AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117

Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT-DTGLAALTSLTGL 374
           GL+HL  L NLE +NL  T I+D  L +L+ L  LK L +   ++T   GLA    +TGL
Sbjct: 118 GLKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGL 177



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 64/120 (53%)

Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
           + +LS   I+D +L+ LAGLS + SLNL   ++T  GLA L  L  LTHL L   ++ D+
Sbjct: 58  AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117

Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
           G  +L+   NL  L + G  +TDAG+  +  L  L  L + Q        L L   +TGL
Sbjct: 118 GLKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGL 177



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 71/130 (54%), Gaps = 1/130 (0%)

Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
              LSD ++    L+ L+GL+ ++S+NL  T ++   L +L  L +L  L+L+  ++ D 
Sbjct: 58  AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT-DAGVKHIKDLSSL 422
           GL  L  L  L +L+L+G  ITD+G + L + K L+ L +    +T  AG+   + ++ L
Sbjct: 118 GLKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGL 177

Query: 423 TLLNLSQNCN 432
            ++ L +   
Sbjct: 178 EVIGLPEEPK 187



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 2/126 (1%)

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
           + +L    I DE L  L GL  +  L L  T+V S+GL  L  L  L  ++L  T ++D 
Sbjct: 58  AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
            L+ L  L +L+ LNL   +ITD GL+ L+SL  L  L ++  ++T      L+    + 
Sbjct: 118 GLKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQE--QIT 175

Query: 400 SLEICG 405
            LE+ G
Sbjct: 176 GLEVIG 181



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 70/150 (46%), Gaps = 25/150 (16%)

Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
           +  +S  K+TD  +  L GL K+  LNL G  VT+A L  L  L +L +L+L + +++D 
Sbjct: 58  AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117

Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
           G                        L HL+ L NLE LNL    I D GL  L+ L  LK
Sbjct: 118 G------------------------LKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLK 153

Query: 304 CLELSDTQVG-SSGLRHLSGLTNLESINLS 332
            L +  T+V   +GL     +T LE I L 
Sbjct: 154 RLYVWQTKVTRPAGLALQEQITGLEVIGLP 183



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 58/98 (59%)

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           ITD  +K L+GL+ + SL +  ++VT +G+A L+ L+ LT L+LE   V  A L  L  L
Sbjct: 66  ITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDAGLKHLQQL 125

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
            +L YLNL   +++D G  + S +  LK L +   ++T
Sbjct: 126 PNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVT 163



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 82/180 (45%), Gaps = 18/180 (10%)

Query: 42  PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
           P        +IA+ GS L   +L+ +D       HL D             +I+D  L+ 
Sbjct: 29  PATEQAKAKIIAAGGSVL---ELAQNDDRLEIAFHLSDQ------------KITDETLKT 73

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
           L GLS + SL+ R    +T+ G+     L  L  L LE+      GL +L+ L  LE LN
Sbjct: 74  LAGLSKVDSLNLR-GTEVTSAGLAQLQHLKALTHLHLEKTKVNDAGLKHLQQLPNLEYLN 132

Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVT-DSGIAYLKGLQKLTLLNLEGCPVTAAC 220
           + +   ITD+ +  LS L  LK L +  +KVT  +G+A  + +  L ++ L   P   A 
Sbjct: 133 L-YGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGLEVIGLPEEPKPVAA 191



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 25/115 (21%)

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
           + +L  ++ITD  L  L  L+ +  L+L G  +T +G A L++ K L  L +    + DA
Sbjct: 58  AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117

Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLN 466
           G+KH++ L +L  LNL                           + IT AGL  L+
Sbjct: 118 GLKHLQQLPNLEYLNLY-------------------------GTEITDAGLSQLS 147


>gi|320165161|gb|EFW42060.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 641

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 91/215 (42%)

Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
           +T+    + + L +L YLNLN   +       F+ + +LK L LG+NE+ D       GL
Sbjct: 74  ITSISAGAFTGLTALTYLNLNSNSIRSISANAFTGLTALKHLPLGYNELADISATAFAGL 133

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
           T L +L+L S  I          L  L  L L   Q+ +      +GL+ L  +NL    
Sbjct: 134 TALNALHLQSNQITSISASAFASLTTLTYLRLDSNQLTNFAANVFAGLSALALLNLESNQ 193

Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
           I+  S      L++L  L L   QIT    +A T LT L  L+LF  +IT   A      
Sbjct: 194 ITSISANAFTDLTALTLLYLQRNQITSIPTSAFTGLTALKDLELFNNQITAIAANTFSGL 253

Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
             L  L +    +T         L +LT L L  N
Sbjct: 254 SALTQLYLFSNQITSIAANAFTGLPALTALALDGN 288



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 106/255 (41%), Gaps = 26/255 (10%)

Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
           N TSL    NN IT+    AF GL  L  L+L                           N
Sbjct: 63  NTTSLELN-NNQITSISAGAFTGLTALTYLNLNS-------------------------N 96

Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
            I        +GLT LK L +  +++ D       GL  L  L+L+   +T+    + ++
Sbjct: 97  SIRSISANAFTGLTALKHLPLGYNELADISATAFAGLTALNALHLQSNQITSISASAFAS 156

Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
           L +L YL L+  QL++     F+ + +L +LNL  N+IT         LT L  L L   
Sbjct: 157 LTTLTYLRLDSNQLTNFAANVFAGLSALALLNLESNQITSISANAFTDLTALTLLYLQRN 216

Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
            I        TGL  LK LEL + Q+ +      SGL+ L  + L    I+  +     G
Sbjct: 217 QITSIPTSAFTGLTALKDLELFNNQITAIAANTFSGLSALTQLYLFSNQITSIAANAFTG 276

Query: 347 LSSLKSLNLDARQIT 361
           L +L +L LD  + T
Sbjct: 277 LPALTALALDGNRFT 291



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 1/183 (0%)

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
           N  SL L++  I        TGL  L  L L+   + S      +GLT L+ + L +  +
Sbjct: 63  NTTSLELNNNQITSISAGAFTGLTALTYLNLNSNSIRSISANAFTGLTALKHLPLGYNEL 122

Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
           +D S    AGL++L +L+L + QIT    +A  SLT LT+L L   ++T+  A       
Sbjct: 123 ADISATAFAGLTALNALHLQSNQITSISASAFASLTTLTYLRLDSNQLTNFAANVFAGLS 182

Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
            L  L +    +T        DL++LTLL L +N  +T       +GLT L  L + N++
Sbjct: 183 ALALLNLESNQITSISANAFTDLTALTLLYLQRN-QITSIPTSAFTGLTALKDLELFNNQ 241

Query: 457 ITS 459
           IT+
Sbjct: 242 ITA 244


>gi|290986035|ref|XP_002675730.1| predicted protein [Naegleria gruberi]
 gi|284089328|gb|EFC42986.1| predicted protein [Naegleria gruberi]
          Length = 483

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 132/314 (42%), Gaps = 32/314 (10%)

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL--SALGSLFYLN 234
           + L  L  L I    V D G+  L+ L +LT L+      T + L  +  ++L  L  L+
Sbjct: 156 NSLKQLTKLGIGQVGVGDEGVRQLEKLTQLTELDASCNDFTISVLVQVIDNSLKQLKTLS 215

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL----VHLKGLTNLESLNLDSCGIGD 290
           +  C + D+  +  + +  L  L++G N IT   L      +K LT LE  N +   IGD
Sbjct: 216 VYSCNIEDEHMKDITTLSQLTSLSVGINRITGNSLKLIGYSMKDLTYLEVANNE---IGD 272

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-----GSLRKLA 345
            G   L  L  LK L +S  ++   G  H+  +  L  +  + T I +       L  L 
Sbjct: 273 AGTEYLCNLKKLKELSISSNKISQLGFEHIKSMDQLRILQCNNTNIMNQVSTMSHLETLV 332

Query: 346 GLS-----------------SLKSLNLDARQITDTGLAA-LTSLTGLTHLDLFGARITDS 387
            +S                 SL  LNL    I D      + S+  L  L L    I D+
Sbjct: 333 VISDCKINIEIFESMSKNMKSLTKLNLYKNAINDMDFVRFIASIQHLRELHLESCSINDN 392

Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
               + + +NLR L +    +TD GVKH+  L+SL  L++  N    +    + SGL GL
Sbjct: 393 SVEIISSIQNLRGLFVPSNDITDGGVKHLTKLTSLRELDIYCNPIGLEGVKIISSGLKGL 452

Query: 448 VSLNVSNSRITSAG 461
            SL +S   I   G
Sbjct: 453 TSLTISKKDIGERG 466



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 125/283 (44%), Gaps = 39/283 (13%)

Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
           EG  + A  L  L+ LG      + +  + D+G  +  K+  L  L+   N+ T   LV 
Sbjct: 149 EGVTLIANSLKQLTKLG------IGQVGVGDEGVRQLEKLTQLTELDASCNDFTISVLVQ 202

Query: 272 L--KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR----HLSGLTN 325
           +    L  L++L++ SC I DE + ++T L  L  L +   ++  + L+     +  LT 
Sbjct: 203 VIDNSLKQLKTLSVYSCNIEDEHMKDITTLSQLTSLSVGINRITGNSLKLIGYSMKDLTY 262

Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           LE  N     I D     L  L  LK L++ + +I+  G   + S+  L  L      I 
Sbjct: 263 LEVAN---NEIGDAGTEYLCNLKKLKELSISSNKISQLGFEHIKSMDQLRILQCNNTNIM 319

Query: 386 D--SGAAYL--------------------RNFKNLRSLEICGGGLTDAG-VKHIKDLSSL 422
           +  S  ++L                    +N K+L  L +    + D   V+ I  +  L
Sbjct: 320 NQVSTMSHLETLVVISDCKINIEIFESMSKNMKSLTKLNLYKNAINDMDFVRFIASIQHL 379

Query: 423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
             L+L ++C++ D ++E+IS +  L  L V ++ IT  G++HL
Sbjct: 380 RELHL-ESCSINDNSVEIISSIQNLRGLFVPSNDITDGGVKHL 421



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 97/201 (48%), Gaps = 11/201 (5%)

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT 297
           ++ D  C   S++ SL V +   N I DE +  +   L  L  L +   G+GDEG+  L 
Sbjct: 124 EIDDVKCLVNSQLTSLDVCD---NSIGDEGVTLIANSLKQLTKLGIGQVGVGDEGVRQLE 180

Query: 298 GLCNLKCLELSDTQVGSSGLRHL--SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
            L  L  L+ S      S L  +  + L  L+++++    I D  ++ +  LS L SL++
Sbjct: 181 KLTQLTELDASCNDFTISVLVQVIDNSLKQLKTLSVYSCNIEDEHMKDITTLSQLTSLSV 240

Query: 356 DARQITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
              +IT   L  +  S+  LT+L++    I D+G  YL N K L+ L I    ++  G +
Sbjct: 241 GINRITGNSLKLIGYSMKDLTYLEVANNEIGDAGTEYLCNLKKLKELSISSNKISQLGFE 300

Query: 415 HIKDLSSLTLLNLSQNCNLTD 435
           HIK +  L +L     CN T+
Sbjct: 301 HIKSMDQLRIL----QCNNTN 317



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 140/286 (48%), Gaps = 24/286 (8%)

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLE 212
           L +L++L++  CN I D  MK ++ L+ L SL +  +++T + +  +   ++ LT L + 
Sbjct: 208 LKQLKTLSVYSCN-IEDEHMKDITTLSQLTSLSVGINRITGNSLKLIGYSMKDLTYLEVA 266

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
              +  A  + L  L  L  L+++  ++S  G E    +  L++L      I ++    +
Sbjct: 267 NNEIGDAGTEYLCNLKKLKELSISSNKISQLGFEHIKSMDQLRILQCNNTNIMNQ----V 322

Query: 273 KGLTNLESLNLDS-CGIGDEGLVNLT-GLCNLKCLELSDTQVGSSG-LRHLSGLTNLESI 329
             +++LE+L + S C I  E   +++  + +L  L L    +     +R ++ + +L  +
Sbjct: 323 STMSHLETLVVISDCKINIEIFESMSKNMKSLTKLNLYKNAINDMDFVRFIASIQHLREL 382

Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF-------GA 382
           +L    I+D S+  ++ + +L+ L + +  ITD G+  LT LT L  LD++       G 
Sbjct: 383 HLESCSINDNSVEIISSIQNLRGLFVPSNDITDGGVKHLTKLTSLRELDIYCNPIGLEGV 442

Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK--DLSSLTLLN 426
           +I  SG       K L SL I    + + G   I+  +L +LT ++
Sbjct: 443 KIISSG------LKGLTSLTISKKDIGERGQYLIRLMNLDTLTYVD 482


>gi|87307225|ref|ZP_01089370.1| hypothetical protein DSM3645_16920 [Blastopirellula marina DSM
           3645]
 gi|87289965|gb|EAQ81854.1| hypothetical protein DSM3645_16920 [Blastopirellula marina DSM
           3645]
          Length = 378

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 61/113 (53%)

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
           + +L    + DE L  L  + N+  + L  T+V  +GL HL+GL  LE +NL+ T ++D 
Sbjct: 252 TYHLSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKTKVTDS 311

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
            LR LA    L  LNL A +++D G+  L SL  L HL L+  + T   A  L
Sbjct: 312 GLRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQL 364



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 58/110 (52%)

Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
           LSD  V    L  L  + N+  INL  T ++D  L  LAGL  L+ LNL   ++TD+GL 
Sbjct: 255 LSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKTKVTDSGLR 314

Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
            L +   L++L+L+   ++D+G  +L +  +LR L +     T    K +
Sbjct: 315 YLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQL 364



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 8/121 (6%)

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           +NR   S D          +   +L    + DE L  L+ + N+  +NL    + D GL 
Sbjct: 239 INRVAQSSDA--------KVVTYHLSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLE 290

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
           +L GL  L+ L L+ T+V  SGLR+L+    L  +NL  T +SD  +  L  L SL+ L 
Sbjct: 291 HLAGLKQLERLNLAKTKVTDSGLRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLY 350

Query: 355 L 355
           L
Sbjct: 351 L 351



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 1/119 (0%)

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +L+   + D+      KIG++  +NL   E+TD  L HL GL  LE LNL    + D GL
Sbjct: 254 HLSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKTKVTDSGL 313

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL-AGLSSLK 351
             L     L  L L  T+V  +G+ HL  L +L  + L  T  +  S ++L A +  LK
Sbjct: 314 RYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQLSAAIPGLK 372



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 60/120 (50%)

Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
           + +LS   + D +L  L  + ++  +NL   ++TD GL  L  L  L  L+L   ++TDS
Sbjct: 252 TYHLSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKTKVTDS 311

Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
           G  YL   + L  L +    ++DAG+ H+  L SL  L L Q     +   +L + + GL
Sbjct: 312 GLRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQLSAAIPGL 371



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 56/105 (53%)

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           + D  + PL  + N+  + +  ++VTD+G+ +L GL++L  LNL    VT + L  L+A 
Sbjct: 260 VHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKTKVTDSGLRYLAAC 319

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
             L YLNL   ++SD G +    + SL+ L L   + T E    L
Sbjct: 320 EKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQL 364



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 60/127 (47%)

Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
           K+   +L   PV    L  L  +G++  +NL   +++D G E  + +  L+ LNL   ++
Sbjct: 249 KVVTYHLSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKTKV 308

Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
           TD  L +L     L  LNL +  + D G+ +L  L +L+ L L  T+      + LS   
Sbjct: 309 TDSGLRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQLSAAI 368

Query: 325 NLESINL 331
               +NL
Sbjct: 369 PGLKVNL 375



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 53/115 (46%)

Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
           +  +S   V D  +A L+ +  +  +NL G  VT A L+ L+ L  L  LNL + +++D 
Sbjct: 252 TYHLSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKTKVTDS 311

Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
           G    +    L  LNL   E++D  + HL  L +L  L L       E    L+ 
Sbjct: 312 GLRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQLSA 366



 Score = 45.4 bits (106), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
           + D   A LR   N+  + + G  +TDAG++H+  L  L  LNL++   +TD  L  ++ 
Sbjct: 260 VHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKT-KVTDSGLRYLAA 318

Query: 444 LTGLVSLNVSNSRITSAGLRHL 465
              L  LN+  + ++ AG+ HL
Sbjct: 319 CEKLSYLNLYATEVSDAGIDHL 340



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L  ++L+ + VTDSGL +L  C  L  L+  +  ++SD G++HL  L +L  L   +  A
Sbjct: 298 LERLNLAKTKVTDSGLRYLAACEKLSYLNL-YATEVSDAGIDHLYSLPSLRHLYLWQTKA 356

Query: 119 ITAQGMKAFAGLINLVKLDL 138
            T +  K  +  I  +K++L
Sbjct: 357 -TPESAKQLSAAIPGLKVNL 375



 Score = 41.6 bits (96), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 3/128 (2%)

Query: 51  VIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
           V  S  + +++  LS   V D  L  L+   N+  ++     +++D GLEHL GL  L  
Sbjct: 242 VAQSSDAKVVTYHLSDKPVHDEALAPLRKIGNVVEINL-MGTEVTDAGLEHLAGLKQLER 300

Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
           L+  +   +T  G++  A    L  L+L        G+ +L  L  L  L + W    T 
Sbjct: 301 LNLAKTK-VTDSGLRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYL-WQTKATP 358

Query: 171 SDMKPLSG 178
              K LS 
Sbjct: 359 ESAKQLSA 366


>gi|357619268|gb|EHJ71912.1| hypothetical protein KGM_06037 [Danaus plexippus]
          Length = 453

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 117/240 (48%), Gaps = 10/240 (4%)

Query: 9   QIFNELVYSRC--LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
           Q+  EL  + C  +TE  L A     +  L L     + D+ +  +A    SL    L  
Sbjct: 192 QVLFELELTGCNEITEAGLWACLTPRIVSLTLTDCINIADEAVGAVAQLLPSLYEFSLQA 251

Query: 67  SDVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQG 123
             VTD+ L +   K  ++L  L  + C ++++ G+ ++   L NLT LS    + +T +G
Sbjct: 252 YHVTDAALGYFSPKQSASLSILRLHSCWELTNHGVVNIVHSLPNLTVLSLSGCSKVTDEG 311

Query: 124 MKAFA-GLINLVKLDLERCTRIHGGLVNLKG--LMKLESLNIKWCNCITDSDMKPLSGLT 180
           ++  A  L  L  LDL  C R+    +      L +LE L +  C  ITD  +  +S + 
Sbjct: 312 VELLAENLPRLRSLDLSWCPRVTDNALEYIACDLNQLEELTLDRCVHITDIGVGYISTMQ 371

Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC 238
           +L +L +  CS+V D G+ +L G++ L LL+L GCP +T+  L SL  L  L  L L  C
Sbjct: 372 SLAALFLRWCSQVRDFGVQHLCGMRSLQLLSLAGCPLLTSGGLSSLIQLRQLRELELTNC 431


>gi|406832962|ref|ZP_11092556.1| hypothetical protein SpalD1_15024 [Schlesneria paludicola DSM
           18645]
          Length = 236

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 1/142 (0%)

Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
           + GL  L S++L  T I D  L+++A L +L +L L    ITD GL  L S   L+ LDL
Sbjct: 68  VKGLDQLTSLDLRKTDIGDTHLKEIAELENLTTLRLSNVPITDAGLIELRSQKKLSTLDL 127

Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
            G RITD G   L    +LR L++    +T  G+K +  L +L  LNL +N  + D  LE
Sbjct: 128 AGTRITDDGLKELSVHHSLRYLDLSETTITGMGLKDLSGLPNLLSLNL-ENTKVNDTGLE 186

Query: 440 LISGLTGLVSLNVSNSRITSAG 461
            +     L+ +N+  + +T AG
Sbjct: 187 CVHEFKHLIRINLRRTSVTDAG 208



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 13/198 (6%)

Query: 230 LFYLNLNRCQLSDDGCEKFS----------KIGSLKVLNLGF---NEITDECLVHLKGLT 276
           + + N  R +  D+  +K            K+    V+++ F   +    + L  +KGL 
Sbjct: 13  VLWPNPARAEDQDEAIKKIRLLRGEVRLDDKLPGTPVVSVSFYGSSRFNGKFLHLVKGLD 72

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
            L SL+L    IGD  L  +  L NL  L LS+  +  +GL  L     L +++L+ T I
Sbjct: 73  QLTSLDLRKTDIGDTHLKEIAELENLTTLRLSNVPITDAGLIELRSQKKLSTLDLAGTRI 132

Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
           +D  L++L+   SL+ L+L    IT  GL  L+ L  L  L+L   ++ D+G   +  FK
Sbjct: 133 TDDGLKELSVHHSLRYLDLSETTITGMGLKDLSGLPNLLSLNLENTKVNDTGLECVHEFK 192

Query: 397 NLRSLEICGGGLTDAGVK 414
           +L  + +    +TDAG K
Sbjct: 193 HLIRINLRRTSVTDAGQK 210



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 90/190 (47%), Gaps = 18/190 (9%)

Query: 211 LEGCPVTAAC-----------LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
           L G PV +             L  +  L  L  L+L +  + D   ++ +++ +L  L L
Sbjct: 44  LPGTPVVSVSFYGSSRFNGKFLHLVKGLDQLTSLDLRKTDIGDTHLKEIAELENLTTLRL 103

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
               ITD  L+ L+    L +L+L    I D+GL  L+   +L+ L+LS+T +   GL+ 
Sbjct: 104 SNVPITDAGLIELRSQKKLSTLDLAGTRITDDGLKELSVHHSLRYLDLSETTITGMGLKD 163

Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
           LSGL NL S+NL  T ++D  L  +     L  +NL    +TD G  A +       + +
Sbjct: 164 LSGLPNLLSLNLENTKVNDTGLECVHEFKHLIRINLRRTSVTDAGQKAFS-------VSM 216

Query: 380 FGARITDSGA 389
              RI DSG+
Sbjct: 217 PNTRIYDSGS 226



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 76/137 (55%), Gaps = 4/137 (2%)

Query: 329 INLSFTGISDGS---LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           +++SF G S  +   L  + GL  L SL+L    I DT L  +  L  LT L L    IT
Sbjct: 50  VSVSFYGSSRFNGKFLHLVKGLDQLTSLDLRKTDIGDTHLKEIAELENLTTLRLSNVPIT 109

Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
           D+G   LR+ K L +L++ G  +TD G+K +    SL  L+LS+   +T   L+ +SGL 
Sbjct: 110 DAGLIELRSQKKLSTLDLAGTRITDDGLKELSVHHSLRYLDLSETT-ITGMGLKDLSGLP 168

Query: 446 GLVSLNVSNSRITSAGL 462
            L+SLN+ N+++   GL
Sbjct: 169 NLLSLNLENTKVNDTGL 185



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 84/178 (47%), Gaps = 12/178 (6%)

Query: 96  DGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
           +G   HL +GL  LTSL  R+ + I    +K  A L NL  L L        GL+ L+  
Sbjct: 61  NGKFLHLVKGLDQLTSLDLRKTD-IGDTHLKEIAELENLTTLRLSNVPITDAGLIELRSQ 119

Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
            KL +L++     ITD  +K LS   +L+ L +S + +T  G+  L GL  L  LNLE  
Sbjct: 120 KKLSTLDLAGTR-ITDDGLKELSVHHSLRYLDLSETTITGMGLKDLSGLPNLLSLNLENT 178

Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS------KI---GSLKVLNLGFNE 263
            V    L+ +     L  +NL R  ++D G + FS      +I   GS    N+G N 
Sbjct: 179 KVNDTGLECVHEFKHLIRINLRRTSVTDAGQKAFSVSMPNTRIYDSGSGPAFNVGMNR 236



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 26/182 (14%)

Query: 141 CTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
            +R +G  ++L KGL +L SL+++  + I D+ +K ++ L NL +L++S   +TD+G+  
Sbjct: 57  SSRFNGKFLHLVKGLDQLTSLDLRKTD-IGDTHLKEIAELENLTTLRLSNVPITDAGLIE 115

Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
           L+  +KL+ L+L G  +T                        DDG ++ S   SL+ L+L
Sbjct: 116 LRSQKKLSTLDLAGTRIT------------------------DDGLKELSVHHSLRYLDL 151

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
               IT   L  L GL NL SLNL++  + D GL  +    +L  + L  T V  +G + 
Sbjct: 152 SETTITGMGLKDLSGLPNLLSLNLENTKVNDTGLECVHEFKHLIRINLRRTSVTDAGQKA 211

Query: 320 LS 321
            S
Sbjct: 212 FS 213



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 8/166 (4%)

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
           + GL  L  L+L  T +G + L+ ++ L NL ++ LS   I+D  L +L     L +L+L
Sbjct: 68  VKGLDQLTSLDLRKTDIGDTHLKEIAELENLTTLRLSNVPITDAGLIELRSQKKLSTLDL 127

Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
              +ITD GL  L+    L +LDL    IT  G   L    NL SL +    + D G++ 
Sbjct: 128 AGTRITDDGLKELSVHHSLRYLDLSETTITGMGLKDLSGLPNLLSLNLENTKVNDTGLEC 187

Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
           + +   L  +NL +  ++TD      +G     S+++ N+RI  +G
Sbjct: 188 VHEFKHLIRINL-RRTSVTD------AGQKAF-SVSMPNTRIYDSG 225



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 10/140 (7%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
            +L ++ LS   +TD+GLI L+    L +LD     +I+D GL+ L    +L  L     
Sbjct: 96  ENLTTLRLSNVPITDAGLIELRSQKKLSTLDLA-GTRITDDGLKELSVHHSLRYLDL-SE 153

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             IT  G+K  +GL NL+ L+LE       GL  +     L  +N++    +TD+  K  
Sbjct: 154 TTITGMGLKDLSGLPNLLSLNLENTKVNDTGLECVHEFKHLIRINLRRT-SVTDAGQKAF 212

Query: 177 SGLTNLKSLQISCSKVTDSG 196
                  S+ +  +++ DSG
Sbjct: 213 -------SVSMPNTRIYDSG 225


>gi|299470286|emb|CBN79590.1| LRR-GTPase of the ROCO family [Ectocarpus siliculosus]
          Length = 1527

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 152/323 (47%), Gaps = 8/323 (2%)

Query: 114 RRNNAITAQGMKAFAGL-IN----LVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNC 167
           +++N  TA  +  ++G+ +N    +VKL L +   + G +   L  L  LESL++   N 
Sbjct: 23  KKDNWDTAAEIATWSGVQVNDEGRVVKLRL-KSNNLRGPIPPQLGNLSFLESLDLG-INK 80

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           +     K L  LT L+ L +  +++T      +  L++L  L L G  +T A      AL
Sbjct: 81  LGGHIPKELGALTILEQLWLERNQLTGPIPREVGNLRELKALWLSGNRLTGAIPAQHGAL 140

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
             L  LNL++ QLS    ++   +  L  L L  N++T      L  L  LESL+L    
Sbjct: 141 SELSCLNLSKTQLSGPILKELGALTKLTSLFLRSNKLTGPIPPELGKLAALESLDLTGNQ 200

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           +       L  L  L  L LS+ Q+       +  L  ++ ++L    +S    ++L  L
Sbjct: 201 LTGAIPAQLGDLNKLTALNLSNNQLSGPIPPEVGKLGAVKQLDLWGNKLSGPIPKELGAL 260

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
           + L SL L + + TD     + +L+ L HL+L   +++    + + N + L++L + G  
Sbjct: 261 TKLASLFLRSNKFTDPIPPEMGNLSALQHLELQNNQLSGPIPSEVGNLRELKTLWLSGNQ 320

Query: 408 LTDAGVKHIKDLSSLTLLNLSQN 430
           LT A    +  L+ LT LNLS+N
Sbjct: 321 LTGAIPAQLGALNELTCLNLSKN 343



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 164/385 (42%), Gaps = 32/385 (8%)

Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLES 159
           +LR L  L     R   AI AQ       L  L  L+L + T++ G ++  L  L KL S
Sbjct: 115 NLRELKALWLSGNRLTGAIPAQ----HGALSELSCLNLSK-TQLSGPILKELGALTKLTS 169

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
           L ++  N +T      L  L  L+SL ++ +++T +  A L  L KLT LNL    ++  
Sbjct: 170 LFLR-SNKLTGPIPPELGKLAALESLDLTGNQLTGAIPAQLGDLNKLTALNLSNNQLSGP 228

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
               +  LG++  L+L   +LS    ++   +  L  L L  N+ TD     +  L+ L+
Sbjct: 229 IPPEVGKLGAVKQLDLWGNKLSGPIPKELGALTKLASLFLRSNKFTDPIPPEMGNLSALQ 288

Query: 280 SLNLD----SCGIGDE------------------GLV--NLTGLCNLKCLELSDTQVGSS 315
            L L     S  I  E                  G +   L  L  L CL LS  Q+   
Sbjct: 289 HLELQNNQLSGPIPSEVGNLRELKTLWLSGNQLTGAIPAQLGALNELTCLNLSKNQLSGE 348

Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
               L  ++ L+S+ L    +S    ++L  LS L  L L+   +T      L +LT LT
Sbjct: 349 IPASLGQVSKLDSLYLHQNKLSGYIPKELGSLSKLGVLRLNNNDLTGPIPNELGALTKLT 408

Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
            L L   ++T +  A L   K L  L + G  L+      +  L SLT LNL +N  L  
Sbjct: 409 SLFLVCNKLTGAIPAQLAALKELTRLLLSGNQLSGPIPPGLGKLPSLTCLNLREN-ELNG 467

Query: 436 KTLELISGLTGLVSLNVSNSRITSA 460
                + GLT L  L +S +++T  
Sbjct: 468 PIPHELGGLTDLKVLGLSKNKLTGP 492



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 137/326 (42%), Gaps = 9/326 (2%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L S+DL+G+ +T +    L D + L +L+ +   Q+S      +  L  +  L     
Sbjct: 189 AALESLDLTGNQLTGAIPAQLGDLNKLTALNLSNN-QLSGPIPPEVGKLGAVKQLDLW-G 246

Query: 117 NAITAQGMKAFAGLINLVKLDLER---CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
           N ++    K    L  L  L L        I   + NL  L  LE  N    N ++    
Sbjct: 247 NKLSGPIPKELGALTKLASLFLRSNKFTDPIPPEMGNLSALQHLELQN----NQLSGPIP 302

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
             +  L  LK+L +S +++T +  A L  L +LT LNL    ++     SL  +  L  L
Sbjct: 303 SEVGNLRELKTLWLSGNQLTGAIPAQLGALNELTCLNLSKNQLSGEIPASLGQVSKLDSL 362

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
            L++ +LS    ++   +  L VL L  N++T      L  LT L SL L    +     
Sbjct: 363 YLHQNKLSGYIPKELGSLSKLGVLRLNNNDLTGPIPNELGALTKLTSLFLVCNKLTGAIP 422

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
             L  L  L  L LS  Q+       L  L +L  +NL    ++     +L GL+ LK L
Sbjct: 423 AQLAALKELTRLLLSGNQLSGPIPPGLGKLPSLTCLNLRENELNGPIPHELGGLTDLKVL 482

Query: 354 NLDARQITDTGLAALTSLTGLTHLDL 379
            L   ++T      L +L  L  LDL
Sbjct: 483 GLSKNKLTGPIPPELGNLGALKTLDL 508


>gi|428298451|ref|YP_007136757.1| small GTP-binding protein [Calothrix sp. PCC 6303]
 gi|428234995|gb|AFZ00785.1| small GTP-binding protein [Calothrix sp. PCC 6303]
          Length = 1408

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 128/433 (29%), Positives = 199/433 (45%), Gaps = 82/433 (18%)

Query: 81  SNLQSLD--FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
           +NL  LD  +N   +IS    E L  L NLT +    NN IT +   A A LINL +LDL
Sbjct: 264 TNLTQLDLSYNQITKIS----EALAKLINLTQIILH-NNKIT-EIPDALAKLINLTQLDL 317

Query: 139 E--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-- 194
              + T+I   L  L  L +L    I + N IT+   + ++ LTNL  L +S +++T   
Sbjct: 318 SYNQITKIPEALAKLTNLTQL----ILYSNQITEIP-EVIAKLTNLTQLDLSYNQITKIP 372

Query: 195 SGIAYLKGLQKLTLLN--LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
             +A L  L +L L +  +   P   A L +L+ +     L+ NR     +  E  +K+ 
Sbjct: 373 EALAKLTNLTQLILYSNRISEIPEALAKLINLTQI----ILSYNRIS---EIPEALAKLT 425

Query: 253 SLKVLNLGFNEITD------------ECLVH----------LKGLTNLESLNLDSCGIGD 290
           +L  L+L +N+IT             + ++H          L  LTNL  L L    I +
Sbjct: 426 NLTQLDLSYNQITKIPEALAKLINLTQIILHSNKITEIPEALAKLTNLRQLYLSYNRITE 485

Query: 291 --EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
             E L  LT   NL  L LSD Q+     + L+ L+NL  ++L+   I++     LA L+
Sbjct: 486 IPEALAKLT---NLTQLNLSDNQIIKIP-KALAKLSNLTQLDLNRNKITEIP-EALAKLT 540

Query: 349 SLKSLNLDARQITDTGLA-----------------------ALTSLTGLTHLDLFGARIT 385
           +L  L L   +IT+   A                       A+T LT LT L+L  ++IT
Sbjct: 541 NLTQLYLRNNRITEIPEALAKLTNLTQLDLGTNYNISEIPEAITKLTNLTQLNLTSSQIT 600

Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
           +     +    NL  L +    + +   + I  L++LT L L+ N  +T+   E I+ LT
Sbjct: 601 EI-PEVIAKLTNLTQLNLTSNQIAEIP-EAIAKLTNLTQLILTSN-QITE-IPEAIAKLT 656

Query: 446 GLVSLNVSNSRIT 458
            L  LN+++++IT
Sbjct: 657 NLTQLNLTSNQIT 669



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 93/289 (32%), Positives = 138/289 (47%), Gaps = 39/289 (13%)

Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
           E L  L+NLT L+   N  I     KA A L NL +LDL R                   
Sbjct: 488 EALAKLTNLTQLNLSDNQIIKIP--KALAKLSNLTQLDLNR------------------- 526

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
                 N IT+   + L+ LTNL  L +  +++T+   A  K L  LT L+L      + 
Sbjct: 527 ------NKITEIP-EALAKLTNLTQLYLRNNRITEIPEALAK-LTNLTQLDLGTNYNISE 578

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
             ++++ L +L  LNL   Q+++   E  +K+ +L  LNL  N+I  E    +  LTNL 
Sbjct: 579 IPEAITKLTNLTQLNLTSSQITEIP-EVIAKLTNLTQLNLTSNQIA-EIPEAIAKLTNLT 636

Query: 280 SLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
            L L S  I +  E +  LT   NL  L L+  Q+ +     ++ LTNL  + LS+  I+
Sbjct: 637 QLILTSNQITEIPEAIAKLT---NLTQLNLTSNQI-TKIPEAIAKLTNLTQLILSYNQIT 692

Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
           +     +A L++L  L L + QIT+    A+T LT LT LDL   RI++
Sbjct: 693 EIP-EAIAKLTNLTQLILTSNQITEIP-DAITKLTNLTQLDLSYNRISE 739



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 134/447 (29%), Positives = 195/447 (43%), Gaps = 80/447 (17%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
           + + SNL  L FN    IS    E +  LSNL  L    N     +  +A A L NL +L
Sbjct: 122 IANLSNLTQLYFN-SNHISKIP-ELIAKLSNLRELHVSSNK--ITEIPEAIAKLSNLREL 177

Query: 137 DLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
            +   + T I   + NL  L +L   +    N IT+   + ++ L NL+ LQ+S +K+T+
Sbjct: 178 HVSSNQITEIPEAIANLSNLRELHVSS----NQITEIP-EAIAKLINLRELQVSSNKITE 232

Query: 195 --SGIAYLKGLQKLTLLN--LEGCPVTAACLDSLSALGSLF------------YLNLNRC 238
               IA L  L+KL L N  +   P   A L +L+ L   +             +NL + 
Sbjct: 233 IPEVIAKLTNLRKLYLRNNQITEIPEVIAKLTNLTQLDLSYNQITKISEALAKLINLTQI 292

Query: 239 QLSDDGC----EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
            L ++      +  +K+ +L  L+L +N+IT +    L  LTNL  L L S  I +   V
Sbjct: 293 ILHNNKITEIPDALAKLINLTQLDLSYNQIT-KIPEALAKLTNLTQLILYSNQITEIPEV 351

Query: 295 NLTGLCNLKCLELSDTQVGS--SGLRHLSGLT--------------------NLESINLS 332
            +  L NL  L+LS  Q+      L  L+ LT                    NL  I LS
Sbjct: 352 -IAKLTNLTQLDLSYNQITKIPEALAKLTNLTQLILYSNRISEIPEALAKLINLTQIILS 410

Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
           +  IS+     LA L++L  L+L   QIT     AL  L  LT + L   +IT+   A L
Sbjct: 411 YNRISEIP-EALAKLTNLTQLDLSYNQITKIP-EALAKLINLTQIILHSNKITEIPEA-L 467

Query: 393 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN------------CNLTDKTL-- 438
               NLR L +    +T+   + +  L++LT LNLS N             NLT   L  
Sbjct: 468 AKLTNLRQLYLSYNRITEIP-EALAKLTNLTQLNLSDNQIIKIPKALAKLSNLTQLDLNR 526

Query: 439 -------ELISGLTGLVSLNVSNSRIT 458
                  E ++ LT L  L + N+RIT
Sbjct: 527 NKITEIPEALAKLTNLTQLYLRNNRIT 553


>gi|290980890|ref|XP_002673164.1| predicted protein [Naegleria gruberi]
 gi|284086746|gb|EFC40420.1| predicted protein [Naegleria gruberi]
          Length = 287

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 126/262 (48%), Gaps = 4/262 (1%)

Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
           L +LT+LN+    +      S+S L  L  L  +  Q+ + G    S++  L  L+L  N
Sbjct: 16  LSQLTILNISNNQIGDLGAQSISELKLLKELFADNNQIGNTGVSFISQLKQLLKLSLMGN 75

Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
              +E +  +  +  L  L++ +  I ++G   +  +  L+ L +S TQ+GS G + +SG
Sbjct: 76  YFDNEGVYSISKMDQLTELDIGTNKIDEKGAQYIGEMKQLRKLFISGTQIGSEGAKAISG 135

Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
           L NL ++N+ ++ I     + + G+  L  L +   +I       +  L  LT L + G 
Sbjct: 136 LPNLTNLNIGYSQIGIEGAKYVCGMHQLTQLGIGNSRIGVETAKLIGQLKHLTFLVIEGN 195

Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELI 441
            I D GA Y+   K L+ L I  G +   G ++I  L  LT L++S  CN  D      I
Sbjct: 196 NIGDEGAKYISEAK-LKKLVISNGRIGGEGAQYIAKLHQLTNLDIS--CNNVDTAGARSI 252

Query: 442 SGLTGLVSLNVSNSRITSAGLR 463
           S L  L  L++S ++I S G R
Sbjct: 253 SKLPNLTILDISVNKIGSGGAR 274



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 99/211 (46%), Gaps = 2/211 (0%)

Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
             ++G    SK+  L  L++G N+I ++   ++  +  L  L +    IG EG   ++GL
Sbjct: 77  FDNEGVYSISKMDQLTELDIGTNKIDEKGAQYIGEMKQLRKLFISGTQIGSEGAKAISGL 136

Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
            NL  L +  +Q+G  G +++ G+  L  + +  + I   + + +  L  L  L ++   
Sbjct: 137 PNLTNLNIGYSQIGIEGAKYVCGMHQLTQLGIGNSRIGVETAKLIGQLKHLTFLVIEGNN 196

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
           I D G A   S   L  L +   RI   GA Y+     L +L+I    +  AG + I  L
Sbjct: 197 IGDEG-AKYISEAKLKKLVISNGRIGGEGAQYIAKLHQLTNLDISCNNVDTAGARSISKL 255

Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
            +LT+L++S N  +      LI G+T L  +
Sbjct: 256 PNLTILDISVN-KIGSGGARLIKGMTQLTKV 285


>gi|224124626|ref|XP_002330070.1| predicted protein [Populus trichocarpa]
 gi|222871495|gb|EEF08626.1| predicted protein [Populus trichocarpa]
          Length = 1126

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 129/419 (30%), Positives = 196/419 (46%), Gaps = 46/419 (10%)

Query: 53  ASQG-SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI---QISDGGLEHLRGLSNL 108
           AS G S+L S+DLS + +T SGL  L   S LQ L+ N  +   Q +D     + G S+L
Sbjct: 131 ASTGFSALKSLDLSDNQLTGSGLKVLS--SRLQKLE-NLHLSGNQCNDSIFSSITGFSSL 187

Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
            SL     N +T  G+K  +                         L KLE+L++    C 
Sbjct: 188 KSLDLSY-NELTGSGLKVLS-----------------------SRLQKLENLHLSGNQC- 222

Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGCPVTAACLDSLSAL 227
            DS    ++G ++LKSL +S ++VT SG+  L   L+KL  L+L       +   SLS  
Sbjct: 223 NDSIFSSITGFSSLKSLDLSYNEVTGSGLKVLSSKLKKLENLDLSDNQCNDSIFSSLSGF 282

Query: 228 GSLFYLNLNRCQL--SDDGCEKF----SKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
            SL YLNL++ QL  S  G   F    S + +L+ L+L  N++ +  L  L G + L+SL
Sbjct: 283 SSLKYLNLSQNQLTGSSTGINSFQVLVSGLRNLEELHLYSNKLNNNILSSLSGFSTLKSL 342

Query: 282 NL-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDG 339
           +L D+   G  G   L GL NL+ L L +T    S L   L  L +L++++ S++  +  
Sbjct: 343 DLSDNMFTGSTG---LNGLRNLETLYLGNTDFKESILIESLGALPSLKTLDASYSNFTHF 399

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLRNFKNL 398
             + L   SSL+ + LD   +  + L  +  L+ L  L L G     +  A      KNL
Sbjct: 400 G-KGLCNSSSLEEVFLDDSSLPASFLRNIGPLSTLKVLSLAGVDFNSTLPAQGWCELKNL 458

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
             L + G  L       + +LS L +L+LS N    +     +S L  L SL++ N+  
Sbjct: 459 EELYLSGNNLKGVLPPCLGNLSFLQILDLSHNQLEGNIAFSYLSHLKQLRSLSIKNNYF 517



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 142/296 (47%), Gaps = 39/296 (13%)

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           +G + LKSL +S +++T SG+  L   LQKL  L+L G                      
Sbjct: 133 TGFSALKSLDLSDNQLTGSGLKVLSSRLQKLENLHLSG---------------------- 170

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG-LTNLESLNLDSCGIGDEGLV 294
           N+C  +D      +   SLK L+L +NE+T   L  L   L  LE+L+L      D    
Sbjct: 171 NQC--NDSIFSSITGFSSLKSLDLSYNELTGSGLKVLSSRLQKLENLHLSGNQCNDSIFS 228

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
           ++TG  +LK L+LS  +V  SGL+ LS  L  LE+++LS    +D     L+G SSLK L
Sbjct: 229 SITGFSSLKSLDLSYNEVTGSGLKVLSSKLKKLENLDLSDNQCNDSIFSSLSGFSSLKYL 288

Query: 354 NLDARQIT--DTGLAAL----TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
           NL   Q+T   TG+ +     + L  L  L L+  ++ ++  + L  F  L+SL++    
Sbjct: 289 NLSQNQLTGSSTGINSFQVLVSGLRNLEELHLYSNKLNNNILSSLSGFSTLKSLDLSDNM 348

Query: 408 LT-DAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRITSAG 461
            T   G+  +++L +L L     N +  +  L E +  L  L +L+ S S  T  G
Sbjct: 349 FTGSTGLNGLRNLETLYL----GNTDFKESILIESLGALPSLKTLDASYSNFTHFG 400



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 119/228 (52%), Gaps = 14/228 (6%)

Query: 251 IGSLKVLNLGFNEITDECLVHLKG-LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
             +LK L+L  N++T   L  L   L  LE+L+L      D    ++TG  +LK L+LS 
Sbjct: 135 FSALKSLDLSDNQLTGSGLKVLSSRLQKLENLHLSGNQCNDSIFSSITGFSSLKSLDLSY 194

Query: 310 TQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
            ++  SGL+ LS  L  LE+++LS    +D     + G SSLKSL+L   ++T +GL  L
Sbjct: 195 NELTGSGLKVLSSRLQKLENLHLSGNQCNDSIFSSITGFSSLKSLDLSYNEVTGSGLKVL 254

Query: 369 TS-LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT--DAGVKHIKDLSS---- 421
           +S L  L +LDL   +  DS  + L  F +L+ L +    LT    G+   + L S    
Sbjct: 255 SSKLKKLENLDLSDNQCNDSIFSSLSGFSSLKYLNLSQNQLTGSSTGINSFQVLVSGLRN 314

Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA----GLRHL 465
           L  L+L  N  L +  L  +SG + L SL++S++  T +    GLR+L
Sbjct: 315 LEELHLYSN-KLNNNILSSLSGFSTLKSLDLSDNMFTGSTGLNGLRNL 361



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 20/158 (12%)

Query: 326 LESINLSFTGI---------------SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
           L+S++LSF G+               +        G S+LKSL+L   Q+T +GL  L+S
Sbjct: 99  LQSLDLSFNGLVGCSENEGFEVLPSKAGAFFHASTGFSALKSLDLSDNQLTGSGLKVLSS 158

Query: 371 -LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLS 428
            L  L +L L G +  DS  + +  F +L+SL++    LT +G+K +   L  L  L+LS
Sbjct: 159 RLQKLENLHLSGNQCNDSIFSSITGFSSLKSLDLSYNELTGSGLKVLSSRLQKLENLHLS 218

Query: 429 QN-CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
            N CN  D     I+G + L SL++S + +T +GL+ L
Sbjct: 219 GNQCN--DSIFSSITGFSSLKSLDLSYNEVTGSGLKVL 254


>gi|71754651|ref|XP_828240.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
            GUTat10.1]
 gi|70833626|gb|EAN79128.1| hypothetical protein Tb11.53.0001 [Trypanosoma brucei brucei strain
            927/4 GUTat10.1]
          Length = 1399

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 114/456 (25%), Positives = 192/456 (42%), Gaps = 78/456 (17%)

Query: 64   LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI---- 119
            LS + + D  + H+ +C +L +L+  FC  I+D     +  LSN+T L  R  N      
Sbjct: 804  LSNTRINDENIRHISECKSLNTLNLAFCNDITD-----ITALSNITML--RELNIDWCFN 856

Query: 120  TAQGMKAFAGLINLVKLDLERC------TRIHGGLVNLKGLMKLESLNIKWCNCI----- 168
              +G++A   L  L +LD ++C       + +      K L+KL   N +   C+     
Sbjct: 857  IEKGVEALGKLPKLRELDAKKCGTSVRWMQQYPYNTLFKSLVKLNLENGRESFCVGTLSS 916

Query: 169  -------------TDSDMKPLSGLTNLKSLQISCSKVTD---SGIAYLKGLQKLTLLNLE 212
                             + P+S L  L+ L +   +V D    GI+  K LQ L   N+ 
Sbjct: 917  TAIVEELLLGRACEPYHLPPISSLRRLRVLNLDDGRVCDIWLEGISQSKSLQSL---NVS 973

Query: 213  GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
             C      + +LS+L +L  LN+N C     G E F  +  L+V  L    +T+E +  L
Sbjct: 974  NCNYITD-ISALSSLSTLEELNVNCCDRIRKGWEAFEALTRLRVATLSVTWVTNEGIRLL 1032

Query: 273  KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-----------VGSSGLRHLS 321
             G  NL +L L  CG     + N+  + N+K LE    Q           VG      + 
Sbjct: 1033 SGCKNLRNLELYCCG----DVSNIEPINNIKSLEELTIQNCHNINEGLLKVGMLPRLRVL 1088

Query: 322  GLTNLESINLSFTGISDGS---------------LRKLAGLSSLKSLNLDA--RQITDTG 364
             L  L+S   S + + +                 ++ ++ +++LK L +    R + D G
Sbjct: 1089 VLRKLQSTYFSLSSLGESKSLVKLTIEGPEELCDIKLISNIATLKELKIAHGDRLLNDVG 1148

Query: 365  LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
               L  L  L  L L    + ++    +   ++L+SL+I         + HI +L++L  
Sbjct: 1149 --DLGKLPWLHVLTLSHFNMGNTCFESVCKIRSLKSLDI-THSFELPDIYHISNLTALEE 1205

Query: 425  LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
            LNLS  C       E ++ L  L  LN+S++R+T++
Sbjct: 1206 LNLS-GCYHIISGWEALTALPRLRVLNLSSTRVTTS 1240



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 108/418 (25%), Positives = 180/418 (43%), Gaps = 67/418 (16%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           +NL+ L+FN+   I D  +E +   + L+ LS    N++T   +   + L  L +L+L  
Sbjct: 228 TNLKCLEFNY-TSIDDSCIEEICECATLSKLSVSECNSLT--DVTPISQLAALEELNLSN 284

Query: 141 CTRIHGG------------------------LVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           C  I  G                        L +L     LE LN+   +CI  +D+ PL
Sbjct: 285 CYHITKGIGALVRLLRLRALDLSGVSVEDNFLKDLCDCGPLERLNLS--HCIQLTDINPL 342

Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           S  T ++ L ++ C ++T  GI+ +  L KL +L+++   ++ + LDS+    SL  L++
Sbjct: 343 SNATAIQELNLNRCHRITQ-GISVVWELPKLRVLHMKDMHLSESSLDSVGTSESLVKLSI 401

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
             C                     GF ++T      L     LE LN+  C     G+  
Sbjct: 402 ENCA--------------------GFGDMT-----LLSSFVALEELNIQKCADIISGVGC 436

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLN 354
           L  L  L+ L + +  + S G   +    +L  + + S TG+SD  +  LA + +L+ L+
Sbjct: 437 LGTLPYLRVLNIKEAHISSIGFTGIGASKSLLQLTIESTTGLSD--VEALANILTLEKLS 494

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF---KNLRSLEICGGGLTDA 411
           L      D G+  L +L  L  LDL G   T++ +  LR     + + SL +        
Sbjct: 495 LLGCNGIDAGIGCLGNLPQLKVLDLSG---TNTDSDSLRGLCVSQTIVSLNL-SHCWKVT 550

Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
            V HI  L +L  LNLS +C   +   E +  L  L    +SN+ IT   + H +  +
Sbjct: 551 SVFHISALETLNELNLS-DCIRINAGWEALEKLQQLHVAILSNTHITDRDISHFSKCK 607



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 177/381 (46%), Gaps = 24/381 (6%)

Query: 93   QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
            ++ D  LE +    +L SL+    N IT   + A + L  L +L++  C RI  G    +
Sbjct: 952  RVCDIWLEGISQSKSLQSLNVSNCNYIT--DISALSSLSTLEELNVNCCDRIRKGWEAFE 1009

Query: 153  GLMKLE--SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
             L +L   +L++ W   +T+  ++ LSG  NL++L++ C     S I  +  ++ L  L 
Sbjct: 1010 ALTRLRVATLSVTW---VTNEGIRLLSGCKNLRNLELYCCGDV-SNIEPINNIKSLEELT 1065

Query: 211  LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECL 269
            ++ C      L  +  L  L  L L + Q +        +  SL  L + G  E+ D   
Sbjct: 1066 IQNCHNINEGLLKVGMLPRLRVLVLRKLQSTYFSLSSLGESKSLVKLTIEGPEELCD--- 1122

Query: 270  VHLKGLTNLESLNLDSCGIGDEGLVNLTG----LCNLKCLELSDTQVGSSGLRHLSGLTN 325
              +K ++N+ +L       GD  L+N  G    L  L  L LS   +G++    +  + +
Sbjct: 1123 --IKLISNIATLKELKIAHGDR-LLNDVGDLGKLPWLHVLTLSHFNMGNTCFESVCKIRS 1179

Query: 326  LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
            L+S++++ +      +  ++ L++L+ LNL       +G  ALT+L  L  L+L   R+T
Sbjct: 1180 LKSLDITHS-FELPDIYHISNLTALEELNLSGCYHIISGWEALTALPRLRVLNLSSTRVT 1238

Query: 386  DS-GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
             S G  Y+   K+L +L +    +TDA    + D+ +L  L++ + C    +    +  L
Sbjct: 1239 TSYGGYYISRCKSLITLNLESCDMTDASC--LADIKTLEELHIGK-CEELTRGFSALFTL 1295

Query: 445  TGLVSLNVSNSRITSAGLRHL 465
              L  LN+ +S IT   LR +
Sbjct: 1296 PQLRILNLMDSLITDEDLREI 1316



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 108/441 (24%), Positives = 174/441 (39%), Gaps = 85/441 (19%)

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
           LS + +TD  + H   C  L +LD +FC ++ D     +  LSN+T+L            
Sbjct: 590 LSNTHITDRDISHFSKCKELVTLDLSFCDELFD-----ITSLSNITTLE----------- 633

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC------------------ 165
                       L+L+ C++I  GL  L  L +L  LN+K                    
Sbjct: 634 -----------DLNLDNCSKIRKGLSVLGELPRLRVLNVKGVHLTNSVIGSLGNGKSFVK 682

Query: 166 ----NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV----- 216
               NC   SD+  LS L+ LK L +       SGI  L  L +L +L+L    +     
Sbjct: 683 LILDNCKGLSDVTFLSSLSTLKELNLHHCDAVTSGIGTLGRLLQLRVLDLGWTKIDNNSL 742

Query: 217 --TAAC-----------------LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
               AC                 + ++++L +L  LN++ C     G   F  +  L+V 
Sbjct: 743 EDICACSSPLVSLNLSHCKEITSISAIASLNALEKLNIDNCCHVTSGWNVFGTLHQLRVA 802

Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG---S 314
            L    I DE + H+    +L +LNL  C      + ++T L N+  L   +        
Sbjct: 803 VLSNTRINDENIRHISECKSLNTLNLAFCN----DITDITALSNITMLRELNIDWCFNIE 858

Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL-NLDARQITDTGLAALTSLTG 373
            G+  L  L  L  ++    G S   +++    +  KSL  L+     ++      S T 
Sbjct: 859 KGVEALGKLPKLRELDAKKCGTSVRWMQQYPYNTLFKSLVKLNLENGRESFCVGTLSSTA 918

Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN- 432
           +    L G          + + + LR L +  G + D  ++ I    SL  LN+S NCN 
Sbjct: 919 IVEELLLGRACEPYHLPPISSLRRLRVLNLDDGRVCDIWLEGISQSKSLQSLNVS-NCNY 977

Query: 433 LTDKTLELISGLTGLVSLNVS 453
           +TD  +  +S L+ L  LNV+
Sbjct: 978 ITD--ISALSSLSTLEELNVN 996



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 107/391 (27%), Positives = 173/391 (44%), Gaps = 62/391 (15%)

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           I++ G        +L++L +E  T +   +  L  ++ LE L++  CN I D+ +  L  
Sbjct: 453 ISSIGFTGIGASKSLLQLTIESTTGL-SDVEALANILTLEKLSLLGCNGI-DAGIGCLGN 510

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGL---QKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           L  LK L +S +  TDS    L+GL   Q +  LNL  C    +    +SAL +L  LNL
Sbjct: 511 LPQLKVLDLSGTN-TDSD--SLRGLCVSQTIVSLNLSHCWKVTSVFH-ISALETLNELNL 566

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-----------------------L 272
           + C   + G E   K+  L V  L    ITD  + H                       L
Sbjct: 567 SDCIRINAGWEALEKLQQLHVAILSNTHITDRDISHFSKCKELVTLDLSFCDELFDITSL 626

Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLC-----NLKCLELSDTQVGSSGLRHLSGLTNLE 327
             +T LE LNLD+C    +GL  L  L      N+K + L+++ +GS G    +G + ++
Sbjct: 627 SNITTLEDLNLDNCSKIRKGLSVLGELPRLRVLNVKGVHLTNSVIGSLG----NGKSFVK 682

Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
            I  +  G+SD +   L+ LS+LK LNL       +G+  L  L  L  LDL   +I ++
Sbjct: 683 LILDNCKGLSDVTF--LSSLSTLKELNLHHCDAVTSGIGTLGRLLQLRVLDLGWTKIDNN 740

Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL---------LNLSQNCNLTDKTL 438
                    +L  +  C   L    + H K+++S++          LN+   C++T    
Sbjct: 741 ---------SLEDICACSSPLVSLNLSHCKEITSISAIASLNALEKLNIDNCCHVTSG-W 790

Query: 439 ELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
            +   L  L    +SN+RI    +RH++  +
Sbjct: 791 NVFGTLHQLRVAVLSNTRINDENIRHISECK 821



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 115/420 (27%), Positives = 190/420 (45%), Gaps = 61/420 (14%)

Query: 44   VNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
            V D W++ I SQ  SL S+++S  + +TD  +  L   S L+ L+ N C +I  G  E  
Sbjct: 953  VCDIWLEGI-SQSKSLQSLNVSNCNYITD--ISALSSLSTLEELNVNCCDRIRKG-WEAF 1008

Query: 103  RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
              L+ L   +      +T +G++  +G  NL  L+L  C  +   +  +  +  LE L I
Sbjct: 1009 EALTRLRVATLSVT-WVTNEGIRLLSGCKNLRNLELYCCGDV-SNIEPINNIKSLEELTI 1066

Query: 163  KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG----CPVTA 218
            + C+ I +  +K +  L  L+ L +   + T   ++ L   + L  L +EG    C +  
Sbjct: 1067 QNCHNINEGLLK-VGMLPRLRVLVLRKLQSTYFSLSSLGESKSLVKLTIEGPEELCDIKL 1125

Query: 219  AC----------------LDSLSALGSLFYLN---LNRCQLSDDGCEKFSKIGSLKVLNL 259
                              L+ +  LG L +L+   L+   + +   E   KI SLK L++
Sbjct: 1126 ISNIATLKELKIAHGDRLLNDVGDLGKLPWLHVLTLSHFNMGNTCFESVCKIRSLKSLDI 1185

Query: 260  GFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS-GL 317
              + E+ D  + H+  LT LE LNL  C     G   LT L  L+ L LS T+V +S G 
Sbjct: 1186 THSFELPD--IYHISNLTALEELNLSGCYHIISGWEALTALPRLRVLNLSSTRVTTSYGG 1243

Query: 318  RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
             ++S   +L ++NL    ++D S   LA + +L+ L++   +    G +AL +L  L  L
Sbjct: 1244 YYISRCKSLITLNLESCDMTDASC--LADIKTLEELHIGKCEELTRGFSALFTLPQLRIL 1301

Query: 378  DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
            +L  + ITD         ++LR +++            I+DL      NLS    L D T
Sbjct: 1302 NLMDSLITD---------EDLREIQLSHT---------IEDL------NLSYCKELNDIT 1337



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 10/171 (5%)

Query: 148  LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKL 206
            + ++  L  LE LN+  C  I  S  + L+ L  L+ L +S ++VT S G  Y+   + L
Sbjct: 1194 IYHISNLTALEELNLSGCYHII-SGWEALTALPRLRVLNLSSTRVTTSYGGYYISRCKSL 1252

Query: 207  TLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
              LNLE C +T A+CL  +  L  L   ++ +C+    G      +  L++LNL  + IT
Sbjct: 1253 ITLNLESCDMTDASCLADIKTLEEL---HIGKCEELTRGFSALFTLPQLRILNLMDSLIT 1309

Query: 266  DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
            DE L  ++    +E LNL  C    + L ++T +  +K ++  D    S G
Sbjct: 1310 DEDLREIQLSHTIEDLNLSYC----KELNDITPVRRIKSIKKMDLHRSSEG 1356


>gi|422408524|ref|ZP_16485485.1| internalin A, partial [Listeria monocytogenes FSL F2-208]
 gi|313610685|gb|EFR85741.1| internalin A [Listeria monocytogenes FSL F2-208]
          Length = 439

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 110/355 (30%), Positives = 164/355 (46%), Gaps = 53/355 (14%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           QI+D  +  L  L+NLT L+   NN IT   + A   L NL +L++   T     +  L 
Sbjct: 6   QITD--ISPLANLTNLTGLTLF-NNQIT--DIDALKNLTNLNRLEITGNTI--SDISVLS 58

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNL 211
           GL  L+ L   + N +TD  +KPL+ LT L+ L IS +KV+D S +A L  L++L   N 
Sbjct: 59  GLTSLQQL--SFGNQVTD--LKPLANLTTLERLDISSNKVSDISVLAKLTNLERLIATNN 114

Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
           +   +T      L  L +L  L+LN  QL D G    + + +L  L++  N+I++  L  
Sbjct: 115 QISDITP-----LGILTNLDELSLNGNQLKDIGT--LASLTNLTSLDVANNQISN--LAP 165

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
           L GLT L  L L    I +  +  + GL  L  LEL + Q+    +  +S L NL  + L
Sbjct: 166 LSGLTKLTELELGYNQISN--ISPIEGLTALTSLELHENQL--EDISPISNLKNLTYLAL 221

Query: 332 SFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSL 371
            F  ISD     SL K                LA L+++  L+    QI+D  L  L +L
Sbjct: 222 YFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAAHNQISD--LTPLANL 279

Query: 372 TGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           T ++ L L     T+    Y  N       KN+    I    ++D G     D++
Sbjct: 280 TRISELGLNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 334



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 104/199 (52%), Gaps = 20/199 (10%)

Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
           N+ITD  +  L  LTNL  L L +  I D + L NLT   NL  LE++   +  S +  L
Sbjct: 5   NQITD--ISPLANLTNLTGLTLFNNQITDIDALKNLT---NLNRLEITGNTI--SDISVL 57

Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
           SGLT+L+   LSF G     L+ LA L++L+ L++ + +++D  ++ L  LT L  L   
Sbjct: 58  SGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLERLIAT 112

Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
             +I+D     L    NL  L + G  L D G   +  L++LT L+++ N       L  
Sbjct: 113 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTSLDVANNQ---ISNLAP 165

Query: 441 ISGLTGLVSLNVSNSRITS 459
           +SGLT L  L +  ++I++
Sbjct: 166 LSGLTKLTELELGYNQISN 184


>gi|405952059|gb|EKC19912.1| F-box/LRR-repeat protein 13 [Crassostrea gigas]
          Length = 834

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 121/456 (26%), Positives = 209/456 (45%), Gaps = 53/456 (11%)

Query: 20  LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL- 77
           L   +  A  +C  LQDL L +  G++D+ + ++      +L ++LS + +TD+ L  + 
Sbjct: 365 LHSATFTALSECRNLQDLNLSECKGLDDESLKLVVKGCKIILYLNLSHTHITDASLRTIS 424

Query: 78  KDCSNLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
           K C N+Q L   +C + SD GL++L   +    L  L       IT  G K+ +    ++
Sbjct: 425 KYCHNVQFLSLAYCKKFSDRGLQYLSAGKCSKKLEYLDLSGCLQITPDGFKSLSAGCTML 484

Query: 135 KLDL----------------ERCTRIHG------------GLVNLKGLMKLESLNIKWCN 166
           ++ +                 +CT+IH                 L     L  L I+   
Sbjct: 485 QILVLNEFPTLNDDCMIAIAAKCTKIHTLSILGSPLLTDETFKRLANNRHLRKLRIEGNQ 544

Query: 167 CITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLDS 223
            I+D  +K +    T L+ L ++ C ++TD+ +  +    KL + N+ +   +T   + S
Sbjct: 545 RISDLSLKAIGKNCTELEHLYLADCQRLTDASLKAIANCSKLVVCNMADVVQITNTGVQS 604

Query: 224 L---SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKG-LTN 277
           L   S   SL  LNL  C ++ D       K  +L  L++ F E I+++  + L G L  
Sbjct: 605 LAEGSCAASLRELNLTNCIRVGDMAMFNIRKFKNLVYLSVCFCEHISEKSGIELLGQLHA 664

Query: 278 LESLNLDSCGIGDEGLVNLTGLCN-LKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFT 334
           L SL++  C   DEGL +L    N L+ + LS+   +   GL+  +    ++E ++LS  
Sbjct: 665 LVSLDISGCNCSDEGLSSLGKYNNHLRDVTLSECADITDLGLQKFTQQCKDIERLDLSHC 724

Query: 335 G-ISDGSLRKLAG-LSSLKSLNLDA-RQITDTGLAALTSLTGLTH-LDLFGA-RITDSGA 389
             ++DG+++ LA     L SLNL   + IT+  +  L+ +    H LD+ G   ITD   
Sbjct: 725 KLLTDGAIKNLAFCCRYLTSLNLAGCKLITNLSIQYLSGVCHHLHTLDISGCIIITDKAL 784

Query: 390 AYLRN-FKNLRSLEI--CGGGLTDAGVKHIKDLSSL 422
            YLR   K L+ L +  C G    A +K ++ + +L
Sbjct: 785 KYLRKGCKKLKYLTMLYCKGVTKHAAMKMMRHVPAL 820



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 166/386 (43%), Gaps = 72/386 (18%)

Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWC 165
           L  LS R  + + +    A +   NL  L+L  C  +    + L  KG   +  LN+   
Sbjct: 354 LIHLSMRGCSQLHSATFTALSECRNLQDLNLSECKGLDDESLKLVVKGCKIILYLNLSHT 413

Query: 166 NCITDSDMKPLSGLT-NLKSLQIS-CSKVTDSGIAYL---KGLQKLTLLNLEGC-PVTAA 219
           + ITD+ ++ +S    N++ L ++ C K +D G+ YL   K  +KL  L+L GC  +T  
Sbjct: 414 H-ITDASLRTISKYCHNVQFLSLAYCKKFSDRGLQYLSAGKCSKKLEYLDLSGCLQITPD 472

Query: 220 CLDSLSALGSLF-YLNLNRCQLSDDGC-----EKFSKIGSLKVLNLGFNEITDECLVHLK 273
              SLSA  ++   L LN     +D C      K +KI +L +L  G   +TDE    L 
Sbjct: 473 GFKSLSAGCTMLQILVLNEFPTLNDDCMIAIAAKCTKIHTLSIL--GSPLLTDETFKRLA 530

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS- 332
              +L  L ++                N +  +LS   +G +        T LE + L+ 
Sbjct: 531 NNRHLRKLRIEG---------------NQRISDLSLKAIGKN-------CTELEHLYLAD 568

Query: 333 FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS---LTGLTHLDLFGA-RITDS 387
              ++D SL+ +A  S L   N+ D  QIT+TG+ +L        L  L+L    R+ D 
Sbjct: 569 CQRLTDASLKAIANCSKLVVCNMADVVQITNTGVQSLAEGSCAASLRELNLTNCIRVGDM 628

Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
               +R FKNL  L +C         +HI + S +                EL+  L  L
Sbjct: 629 AMFNIRKFKNLVYLSVCF-------CEHISEKSGI----------------ELLGQLHAL 665

Query: 448 VSLNVSNSRITSAGL----RHLNHAR 469
           VSL++S    +  GL    ++ NH R
Sbjct: 666 VSLDISGCNCSDEGLSSLGKYNNHLR 691


>gi|17227620|ref|NP_484168.1| hypothetical protein alr0124 [Nostoc sp. PCC 7120]
 gi|17135102|dbj|BAB77648.1| leucine-rich-repeat protein [Nostoc sp. PCC 7120]
          Length = 1119

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 102/320 (31%), Positives = 152/320 (47%), Gaps = 17/320 (5%)

Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
           + T I   L  L  L +L    I   N IT+   + L+ LTNL  L +S +++T+   A 
Sbjct: 114 QLTEIPEALAKLTNLTQL----ILSDNQITEIP-EALAKLTNLTQLNLSYNQITEIPEA- 167

Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
           L  L  LT LNL    +T    ++L+ L +L  LNL R     +  E  +K+ +L  LNL
Sbjct: 168 LAKLTNLTQLNLSYNQITEIP-EALAKLTNLTQLNL-RGNQRTEIPEALAKLTNLTRLNL 225

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
            +N+ T E    L  LTNL  L L    I  E    +  L NL  L LS  Q+       
Sbjct: 226 SYNQRT-EIPEALAKLTNLTQLILSDNQI-KEIPETIAKLTNLTHLILSGNQIKEIP-ET 282

Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
           ++ LTNL  + L    I +     +A L++L  L LD  QI +    A+T LT LTHL L
Sbjct: 283 IAKLTNLTQLGLDGNQIKEIP-EAIAKLTNLTQLGLDGNQIKEIP-EAITKLTNLTHLIL 340

Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
            G +I +     +    NL  L +    +T+   + +  L++LT L LS   N   +  E
Sbjct: 341 SGNQIKEIPET-IAKLTNLTQLALSSNQITEIP-EVLAQLTNLTQLFLS--SNQITQIPE 396

Query: 440 LISGLTGLVSLNVSNSRITS 459
            ++ LT L +L++  ++IT 
Sbjct: 397 ALAPLTNLTTLHLRVNQITQ 416


>gi|430744490|ref|YP_007203619.1| hypothetical protein Sinac_3679 [Singulisphaera acidiphila DSM
           18658]
 gi|430016210|gb|AGA27924.1| hypothetical protein Sinac_3679 [Singulisphaera acidiphila DSM
           18658]
          Length = 242

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 99/208 (47%), Gaps = 26/208 (12%)

Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
           F EI +  LV      N  S    +    D  L+ L  L NLK + L+ +Q    GL+ L
Sbjct: 53  FQEIAEVSLVRDPFAPN--SFQPINNAKADNLLLQLADLTNLKGVLLTGSQATDQGLKCL 110

Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
           S + NLE+I                       + ++A ++TD G+  L  L+ L  L + 
Sbjct: 111 SQMENLENI-----------------------VTVEATEVTDVGVFYLEKLSKLRDLHIS 147

Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
            + +TD+  A +     L  + + G  LTDAG+ H+KDL  L +L+L+ +  LTD  LE 
Sbjct: 148 YSNLTDAAIASIAKHPKLEQILVRGNRLTDAGLTHLKDLECLQVLDLA-DTGLTDVGLEE 206

Query: 441 ISGLTGLVSLNVSNSRITSAGLRHLNHA 468
           +  L  L  + V ++++T AG++ L  A
Sbjct: 207 LRLLAKLRIVCVGDTKVTEAGVQRLKAA 234



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 81/158 (51%), Gaps = 1/158 (0%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT-LLNLEGCPVTAACLDSL 224
           N   D+ +  L+ LTNLK + ++ S+ TD G+  L  ++ L  ++ +E   VT   +  L
Sbjct: 76  NAKADNLLLQLADLTNLKGVLLTGSQATDQGLKCLSQMENLENIVTVEATEVTDVGVFYL 135

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
             L  L  L+++   L+D      +K   L+ + +  N +TD  L HLK L  L+ L+L 
Sbjct: 136 EKLSKLRDLHISYSNLTDAAIASIAKHPKLEQILVRGNRLTDAGLTHLKDLECLQVLDLA 195

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
             G+ D GL  L  L  L+ + + DT+V  +G++ L  
Sbjct: 196 DTGLTDVGLEELRLLAKLRIVCVGDTKVTEAGVQRLKA 233



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 76/140 (54%), Gaps = 3/140 (2%)

Query: 239 QLSDDGCEKFSKIGSLK-VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
           Q +D G +  S++ +L+ ++ +   E+TD  + +L+ L+ L  L++    + D  + ++ 
Sbjct: 101 QATDQGLKCLSQMENLENIVTVEATEVTDVGVFYLEKLSKLRDLHISYSNLTDAAIASIA 160

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
               L+ + +   ++  +GL HL  L  L+ ++L+ TG++D  L +L  L+ L+ + +  
Sbjct: 161 KHPKLEQILVRGNRLTDAGLTHLKDLECLQVLDLADTGLTDVGLEELRLLAKLRIVCVGD 220

Query: 358 RQITDTGLAALTSLTGLTHL 377
            ++T+ G+  L +   + HL
Sbjct: 221 TKVTEAGVQRLKA--AMPHL 238



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 8/149 (5%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  V L+GS  TD GL  L    NL+++      +++D G+ +L  LS L  L    +
Sbjct: 90  TNLKGVLLTGSQATDQGLKCLSQMENLENIVTVEATEVTDVGVFYLEKLSKLRDLHISYS 149

Query: 117 NAITAQGMKAFAGLINLVKLD--LERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDM 173
           N   A    A A +    KL+  L R  R+   GL +LK L  L+ L++     +TD  +
Sbjct: 150 NLTDA----AIASIAKHPKLEQILVRGNRLTDAGLTHLKDLECLQVLDLA-DTGLTDVGL 204

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
           + L  L  L+ + +  +KVT++G+  LK 
Sbjct: 205 EELRLLAKLRIVCVGDTKVTEAGVQRLKA 233



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 73/159 (45%)

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
           NNA     +   A L NL  + L        GL  L  +  LE++       +TD  +  
Sbjct: 75  NNAKADNLLLQLADLTNLKGVLLTGSQATDQGLKCLSQMENLENIVTVEATEVTDVGVFY 134

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           L  L+ L+ L IS S +TD+ IA +    KL  + + G  +T A L  L  L  L  L+L
Sbjct: 135 LEKLSKLRDLHISYSNLTDAAIASIAKHPKLEQILVRGNRLTDAGLTHLKDLECLQVLDL 194

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
               L+D G E+   +  L+++ +G  ++T+  +  LK 
Sbjct: 195 ADTGLTDVGLEELRLLAKLRIVCVGDTKVTEAGVQRLKA 233


>gi|407034343|gb|EKE37172.1| leucine rich repeat protein [Entamoeba nuttalli P19]
          Length = 657

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 162/366 (44%), Gaps = 44/366 (12%)

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
           LS SD    G I+L  C++L+ L  N   ++++  L+ L  + NL  +S +    ++   
Sbjct: 260 LSPSD----GFIYLAGCNSLRYLYLNES-EVTNYHLDVLARMDNLLGISLKGCPTLSDYS 314

Query: 124 MKAF-AGLI--NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           +  F  G I  +L +L++      H GL  +  L  L  L+I  C+ I    + PL+ L 
Sbjct: 315 LTPFKTGPIRKSLEELNISDTMVTHIGLQIIVRLKYLRVLDISRCDGI--KILSPLNSLK 372

Query: 181 NLKSLQISCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNR 237
            L+ L++S   V    +  A+    + L  L ++  P+    L  + S   +L  +NL  
Sbjct: 373 YLEVLRLSNVHVNSDTLQDAFRIPPKYLQQLLVDARPIDDPLLTVICSKFPNLVSVNLKE 432

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL 296
            Q++  G E    +  L+ ++     + D+   +L  +T+LE+++ + C  I  EG+  L
Sbjct: 433 SQITSRGVEALQMVKYLRYVDFSKTSVDDQVFEYLSKITSLETISFEECQNISGEGVHVL 492

Query: 297 TGLCNLKCL--------------ELSD-----------TQVGSSGLRHLSGLTNLESINL 331
             L  L+ L              E+ D            Q+G    ++++ +  L+ ++L
Sbjct: 493 EPLRGLRVLNFNGCKNFSEYSLKEMEDLSVETLRVSGANQIGMEAWKYIAQIEQLKRLDL 552

Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
           SFT + D  ++++     L+ + L   +ITD  +  L     +  +D   AR T+    Y
Sbjct: 553 SFTNVEDNGIQEMLKSKWLEVIYLRHTKITDKSIETLLCCNLIRKID---ARETNVEKQY 609

Query: 392 LRNFKN 397
             NF N
Sbjct: 610 --NFSN 613



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 138/329 (41%), Gaps = 46/329 (13%)

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           ITDSD+  +  LT LK L IS  K     I  +  + +LT L +   P+      +L   
Sbjct: 175 ITDSDIPSIGKLTGLKKLSISSKKFI-GKIEDMIDVSQLTSLEISNAPLGPEFYYNLYLF 233

Query: 228 GSLFYLNLNRCQL---------------SDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
             L ++   RC L                 DG    +   SL+ L L  +E+T+  L  L
Sbjct: 234 PYLVFIGFTRCHLPISGVSAQTPLSQLSPSDGFIYLAGCNSLRYLYLNESEVTNYHLDVL 293

Query: 273 KGLTNLESLNLDSCG-IGDEGLVNL-TGLC--NLKCLELSDTQVGSSGLR---------- 318
             + NL  ++L  C  + D  L    TG    +L+ L +SDT V   GL+          
Sbjct: 294 ARMDNLLGISLKGCPTLSDYSLTPFKTGPIRKSLEELNISDTMVTHIGLQIIVRLKYLRV 353

Query: 319 -------------HLSGLTNLESINLSFTGISDGSLRKLAGLSS--LKSLNLDARQITDT 363
                         L+ L  LE + LS   ++  +L+    +    L+ L +DAR I D 
Sbjct: 354 LDISRCDGIKILSPLNSLKYLEVLRLSNVHVNSDTLQDAFRIPPKYLQQLLVDARPIDDP 413

Query: 364 GLAALTS-LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
            L  + S    L  ++L  ++IT  G   L+  K LR ++     + D   +++  ++SL
Sbjct: 414 LLTVICSKFPNLVSVNLKESQITSRGVEALQMVKYLRYVDFSKTSVDDQVFEYLSKITSL 473

Query: 423 TLLNLSQNCNLTDKTLELISGLTGLVSLN 451
             ++  +  N++ + + ++  L GL  LN
Sbjct: 474 ETISFEECQNISGEGVHVLEPLRGLRVLN 502



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 127/282 (45%), Gaps = 18/282 (6%)

Query: 175 PLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
           P+SG+    S Q   S+++ S G  YL G   L  L L    VT   LD L+ + +L  +
Sbjct: 247 PISGV----SAQTPLSQLSPSDGFIYLAGCNSLRYLYLNESEVTNYHLDVLARMDNLLGI 302

Query: 234 NLNRCQ-LSDDGCEKFSKIG----SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
           +L  C  LSD     F K G    SL+ LN+    +T   L  +  L  L  L++  C  
Sbjct: 303 SLKGCPTLSDYSLTPF-KTGPIRKSLEELNISDTMVTHIGLQIIVRLKYLRVLDISRCD- 360

Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN--LESINLSFTGISDGSLRKL-A 345
           G + L  L  L  L+ L LS+  V S  L+    +    L+ + +    I D  L  + +
Sbjct: 361 GIKILSPLNSLKYLEVLRLSNVHVNSDTLQDAFRIPPKYLQQLLVDARPIDDPLLTVICS 420

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR--SLEI 403
              +L S+NL   QIT  G+ AL  +  L ++D     + D    YL    +L   S E 
Sbjct: 421 KFPNLVSVNLKESQITSRGVEALQMVKYLRYVDFSKTSVDDQVFEYLSKITSLETISFEE 480

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
           C   ++  GV  ++ L  L +LN +   N ++ +L+ +  L+
Sbjct: 481 C-QNISGEGVHVLEPLRGLRVLNFNGCKNFSEYSLKEMEDLS 521


>gi|386333662|ref|YP_006029832.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
 gi|334196111|gb|AEG69296.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
          Length = 637

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 164/382 (42%), Gaps = 41/382 (10%)

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
           +G +  AG ++L  L+        GG   LK    LESL++   N I     + L+G  +
Sbjct: 240 RGAQLLAGKLSLKTLNAADGGIGVGGCAALKDSPALESLDMSG-NRIGGQGPEYLAGSKS 298

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL--NRC- 238
           +K+L++ C  VTD GI  L    +LT L++ G  +    L  L A  SL  L++  NR  
Sbjct: 299 IKTLRLCCCGVTDPGIQALAKNNQLTSLDVSGNYIGNDALRELVASPSLTELDVSCNRPH 358

Query: 239 ------QLSDDGCE-----------KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
                 Q  ++G +           + + + SLK     FN+   E L      T   SL
Sbjct: 359 TPAPQHQKEEEGVQMAFALAEGMVGRATPLASLKADGNWFNDFAAEMLAFPTVKT--ASL 416

Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
           +L S  IG  G   L     LK L+L+  ++G  G + L+G  +L ++ +    ++D  +
Sbjct: 417 SLKSNLIGPAGAEKLAENPVLKSLDLTQNRIGDEGAQALAGSKSLTTLAVLNCLVTDTGV 476

Query: 342 RKLAGLSSLKSLNL------------------DARQITDTGLAALTSLTGLTHLDLFGAR 383
             LA   +LKSLNL                   A +IT  G++AL     LT L + G  
Sbjct: 477 EALASNRTLKSLNLGNLVTETENEAEQAGYDETANEITVAGVSALAKNRSLTSLSVQGNL 536

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
             D     L   + L SL +    +T A V  +     LT L++  N +L  + ++ ++ 
Sbjct: 537 CGDDAVIALAKNRTLTSLNVAYTDMTPASVPELARNPVLTSLSVRWNYDLGPQGIQALAK 596

Query: 444 LTGLVSLNVSNSRITSAGLRHL 465
              L SL+  N+     G + L
Sbjct: 597 SQSLTSLDARNTSKGEVGAKAL 618



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 73/142 (51%), Gaps = 1/142 (0%)

Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
              LES+N+    I D   + LAG  SLK+LN     I   G AAL     L  LD+ G 
Sbjct: 224 FPQLESLNVKGARIGDRGAQLLAGKLSLKTLNAADGGIGVGGCAALKDSPALESLDMSGN 283

Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
           RI   G  YL   K++++L +C  G+TD G++ +   + LT L++S N    D   EL++
Sbjct: 284 RIGGQGPEYLAGSKSIKTLRLCCCGVTDPGIQALAKNNQLTSLDVSGNYIGNDALRELVA 343

Query: 443 GLTGLVSLNVSNSRITSAGLRH 464
             + L  L+VS +R  +   +H
Sbjct: 344 SPS-LTELDVSCNRPHTPAPQH 364



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 85/199 (42%), Gaps = 11/199 (5%)

Query: 221 LDSLSALG-SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
           LD L  L  +L +L+L  C   D G + ++ I  L  +  G   +             LE
Sbjct: 179 LDDLKKLPPTLRHLDLGECA-PDCGAKSYAAIQYLTTVLPGTGTVP---------FPQLE 228

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
           SLN+    IGD G   L G  +LK L  +D  +G  G   L     LES+++S   I   
Sbjct: 229 SLNVKGARIGDRGAQLLAGKLSLKTLNAADGGIGVGGCAALKDSPALESLDMSGNRIGGQ 288

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
               LAG  S+K+L L    +TD G+ AL     LT LD+ G  I +     L    +L 
Sbjct: 289 GPEYLAGSKSIKTLRLCCCGVTDPGIQALAKNNQLTSLDVSGNYIGNDALRELVASPSLT 348

Query: 400 SLEICGGGLTDAGVKHIKD 418
            L++          +H K+
Sbjct: 349 ELDVSCNRPHTPAPQHQKE 367



 Score = 44.7 bits (104), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 109/259 (42%), Gaps = 21/259 (8%)

Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
           L  LN+   ++ D G +  +   SLK LN     I       LK    LESL++    IG
Sbjct: 227 LESLNVKGARIGDRGAQLLAGKLSLKTLNAADGGIGVGGCAALKDSPALESLDMSGNRIG 286

Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
            +G   L G  ++K L L    V   G++ L+    L S+++S   I + +LR+L    S
Sbjct: 287 GQGPEYLAGSKSIKTLRLCCCGVTDPGIQALAKNNQLTSLDVSGNYIGNDALRELVASPS 346

Query: 350 LKSLNL---------DARQITDTGLAALTSL--------TGLTHLDLFGARITDSGAAYL 392
           L  L++            Q  + G+    +L        T L  L   G    D  A  L
Sbjct: 347 LTELDVSCNRPHTPAPQHQKEEEGVQMAFALAEGMVGRATPLASLKADGNWFNDFAAEML 406

Query: 393 RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
             F  ++  SL +    +  AG + + +   L  L+L+QN  + D+  + ++G   L +L
Sbjct: 407 A-FPTVKTASLSLKSNLIGPAGAEKLAENPVLKSLDLTQN-RIGDEGAQALAGSKSLTTL 464

Query: 451 NVSNSRITSAGLRHLNHAR 469
            V N  +T  G+  L   R
Sbjct: 465 AVLNCLVTDTGVEALASNR 483



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 147/348 (42%), Gaps = 46/348 (13%)

Query: 43  GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
           GV D  +  +A + + L S+D+SG+ + +  L  L    +L  LD + C +      +H 
Sbjct: 308 GVTDPGIQALA-KNNQLTSLDVSGNYIGNDALRELVASPSLTELDVS-CNRPHTPAPQHQ 365

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
           +    +  ++F       A+GM   A  +  +K D          ++     +K  SL++
Sbjct: 366 KEEEGV-QMAF-----ALAEGMVGRATPLASLKADGNWFNDFAAEMLAFP-TVKTASLSL 418

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
           K  N I  +  + L+    LKSL ++ +++ D G   L G + LT L +  C VT   ++
Sbjct: 419 K-SNLIGPAGAEKLAENPVLKSLDLTQNRIGDEGAQALAGSKSLTTLAVLNCLVTDTGVE 477

Query: 223 SLSALGSLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
           +L++  +L  LNL N    +++  E+            G++E  +E  V           
Sbjct: 478 ALASNRTLKSLNLGNLVTETENEAEQA-----------GYDETANEITV----------- 515

Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
                     G+  L    +L  L +     G   +  L+    L S+N+++T ++  S+
Sbjct: 516 ---------AGVSALAKNRSLTSLSVQGNLCGDDAVIALAKNRTLTSLNVAYTDMTPASV 566

Query: 342 RKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSG 388
            +LA    L SL++     +   G+ AL     LT LD   AR T  G
Sbjct: 567 PELARNPVLTSLSVRWNYDLGPQGIQALAKSQSLTSLD---ARNTSKG 611


>gi|290980573|ref|XP_002673006.1| predicted protein [Naegleria gruberi]
 gi|284086587|gb|EFC40262.1| predicted protein [Naegleria gruberi]
          Length = 361

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 135/285 (47%), Gaps = 13/285 (4%)

Query: 149 VNLKGLMKLESLN----IKWCNCITDSDM------KPLSGLTNLKSLQISCSKVTDSGIA 198
           +NLK L K + LN    +K  N    S +      + L G+ +LK + I        GI 
Sbjct: 73  INLKSLAKSQYLNRIVSLKTVNSFDGSIIDNVELCEILQGMKDLKEVWIYKQLKGVKGIK 132

Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
            +  L++LT+L++    +    +  L+ L  L  L +    + DD  +  S++  L  L+
Sbjct: 133 KIGSLKQLTILDVSYNDIGYGGVKWLTQLSQLTELRIGNNSIFDDDIKMISEMKQLTKLD 192

Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
           L    I D  + +L  L NL SL L    + DE + +++ L  L  L + + Q+G+ G +
Sbjct: 193 LSNCRIMD-GVQYLSKLENLTSLRLCGNRLTDERVESISNLKQLTELYIGENQLGTEGAK 251

Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
            +  +T L  +N+    IS G ++ L  L  L  LN+   +I DTG+  ++ +  LT L 
Sbjct: 252 SIGNMTQLTRLNIQQNRISQG-VKYLEKLDRLTDLNISKNKIGDTGVIIISEMNQLTKLT 310

Query: 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI-KDLSSL 422
           +   +I++ GA  L   + L  L+I    +++     + K++ SL
Sbjct: 311 IRDNKISEEGAKTLGLLQKLTYLDISDNSVSNVTANSMQKNMKSL 355



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 107/219 (48%), Gaps = 5/219 (2%)

Query: 246 EKFSKIGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
           +  ++I SLK +N     I D  E    L+G+ +L+ + +     G +G+  +  L  L 
Sbjct: 82  QYLNRIVSLKTVNSFDGSIIDNVELCEILQGMKDLKEVWIYKQLKGVKGIKKIGSLKQLT 141

Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
            L++S   +G  G++ L+ L+ L  + +    I D  ++ ++ +  L  L+L   +I D 
Sbjct: 142 ILDVSYNDIGYGGVKWLTQLSQLTELRIGNNSIFDDDIKMISEMKQLTKLDLSNCRIMD- 200

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
           G+  L+ L  LT L L G R+TD     + N K L  L I    L   G K I +++ LT
Sbjct: 201 GVQYLSKLENLTSLRLCGNRLTDERVESISNLKQLTELYIGENQLGTEGAKSIGNMTQLT 260

Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
            LN+ QN     + ++ +  L  L  LN+S ++I   G+
Sbjct: 261 RLNIQQNR--ISQGVKYLEKLDRLTDLNISKNKIGDTGV 297



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 114/230 (49%), Gaps = 4/230 (1%)

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           +K +  L  L  L +S + +   G+ +L  L +LT L +    +    +  +S +  L  
Sbjct: 131 IKKIGSLKQLTILDVSYNDIGYGGVKWLTQLSQLTELRIGNNSIFDDDIKMISEMKQLTK 190

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           L+L+ C++ D G +  SK+ +L  L L  N +TDE +  +  L  L  L +    +G EG
Sbjct: 191 LDLSNCRIMD-GVQYLSKLENLTSLRLCGNRLTDERVESISNLKQLTELYIGENQLGTEG 249

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
             ++  +  L  L +   ++ S G+++L  L  L  +N+S   I D  +  ++ ++ L  
Sbjct: 250 AKSIGNMTQLTRLNIQQNRI-SQGVKYLEKLDRLTDLNISKNKIGDTGVIIISEMNQLTK 308

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
           L +   +I++ G   L  L  LT+LD+    +++  A  ++  KN++SL+
Sbjct: 309 LTIRDNKISEEGAKTLGLLQKLTYLDISDNSVSNVTANSMQ--KNMKSLK 356



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 6/175 (3%)

Query: 94  ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
           I  GG++ L  LS LT L    NN+I    +K  + +  L KLDL  C RI  G+  L  
Sbjct: 150 IGYGGVKWLTQLSQLTELRIG-NNSIFDDDIKMISEMKQLTKLDLSNC-RIMDGVQYLSK 207

Query: 154 LMKLESLNIKWC-NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
           L  L SL +  C N +TD  ++ +S L  L  L I  +++   G   +  + +LT LN++
Sbjct: 208 LENLTSLRL--CGNRLTDERVESISNLKQLTELYIGENQLGTEGAKSIGNMTQLTRLNIQ 265

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
              ++   +  L  L  L  LN+++ ++ D G    S++  L  L +  N+I++E
Sbjct: 266 QNRISQG-VKYLEKLDRLTDLNISKNKIGDTGVIIISEMNQLTKLTIRDNKISEE 319


>gi|343414400|emb|CCD21001.1| leucine-rich repeat protein [Trypanosoma vivax Y486]
          Length = 511

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 136/420 (32%), Positives = 186/420 (44%), Gaps = 84/420 (20%)

Query: 86  LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
           LD + C  I+D  +  L  L  L  L       IT   +   + LI L KL+L  CT I 
Sbjct: 2   LDLSHCTGITD--VSPLTTLIELKELDLNDCTGIT--DVSPLSTLIRLEKLNLSDCTGIT 57

Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 204
             +  L  L++LE LN+  C  IT  D+ PL+ L  LK L ++ C+++TD  ++ L  L 
Sbjct: 58  D-VSPLSTLIRLEKLNLSGCTGIT--DVSPLTTLIELKELDLNDCTRITD--VSPLSTLI 112

Query: 205 KLTLLNLEGC-------PVTA------ACL---------DSLSALGSLFYLNLNRC---- 238
           +L  L L GC       P+T        CL           L+ L  L  L L+ C    
Sbjct: 113 RLEKLCLSGCTGITDVSPLTTLIELKELCLSGCTGITDVSPLTTLIELKELGLSGCTGIT 172

Query: 239 ------------QLSDDGCEKFSKIGS------LKVLNL-GFNEITDECLVHLKGLTNLE 279
                       +L   GC   + +        LKVL L G   ITD  +  L  L  L+
Sbjct: 173 DVSPLTTLIELKELGLSGCTGITDVSPLTTLIRLKVLYLIGCTGITD--VSPLTTLIELK 230

Query: 280 SLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF----T 334
            L+L  C GI D  +  LT L  LK L LS    G +G+  +S LT L  + + +    T
Sbjct: 231 ELDLHDCTGITD--VSPLTTLIELKELGLS----GCTGITDVSPLTTLIRLEVLYLIGCT 284

Query: 335 GISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 392
           GI+D S   L  L  LK L+L D   ITD  ++ LT+L  L  L L+G  RITD   + L
Sbjct: 285 GITDVS--PLTTLIELKELDLHDCTGITD--VSPLTTLIELKELALYGCTRITD--VSPL 338

Query: 393 RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
                L  L + G  G+TD  V  +  L  L +L L     +TD     +S LT L+ L 
Sbjct: 339 SALIRLEKLCLSGCTGITD--VSPLTTLIRLEVLYLIGCTGITD-----VSPLTTLIELK 391


>gi|449463292|ref|XP_004149368.1| PREDICTED: F-box/LRR-repeat protein 3-like [Cucumis sativus]
          Length = 663

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 125/448 (27%), Positives = 200/448 (44%), Gaps = 63/448 (14%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
           L+ LCL     + D  + +IA++   L S+DLS   +T+  L  +    +L+ L    C 
Sbjct: 187 LKLLCLNWCLHITDLGVGLIATKCKELRSLDLSFLPITEKCLPTILQLQHLEELILEECH 246

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNL 151
            I D GLE L+      SL F                      L+L RC  I H GL +L
Sbjct: 247 GIDDEGLEALKRNCKRNSLKF----------------------LNLSRCPSISHSGLSSL 284

Query: 152 -KGLMKLESLNIKWCNCIT-DSDM-KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ-KLT 207
             G   L+ LN+ + + ++  +DM K L   + L+S+++ C  +T SG+  +   +  L 
Sbjct: 285 IIGSENLQKLNLSYGSSVSITTDMAKCLHNFSGLQSIKLDCCSLTTSGVKTIANWRASLK 344

Query: 208 LLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
            L+L  C  VT  CL       S+      + +  D  C +    GS+       N IT 
Sbjct: 345 ELSLSKCAGVTDECL-------SILVQKHKQLRKLDITCCRKITYGSI-------NSITS 390

Query: 267 ECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN-LKCLELSDTQVGSSGLRHLSGLT 324
            C       + L SL ++SC  +  E  V +   C  L+ L+L+D ++ + GL+ +S  +
Sbjct: 391 SC-------SFLVSLKMESCSLVPREAYVLIGQRCPYLEELDLTDNEIDNEGLKSISKCS 443

Query: 325 NLESINLSFT-GISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-- 379
            L  + L     I+D  L  +A G   +K L+L  +  ITD G+AA     G   L++  
Sbjct: 444 RLSVLKLGICLNINDDGLCHIASGCPKIKELDLYRSTGITDRGIAATAG--GCPALEMIN 501

Query: 380 --FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIK-DLSSLTLLNLSQNCNLTD 435
             +  +ITDS    L    NL++LEI G   ++  G+  I      LT+L++ +  N+ D
Sbjct: 502 IAYNDKITDSSLISLSKCLNLKALEIRGCCCISSIGLSAIAMGCKQLTVLDIKKCVNVND 561

Query: 436 K-TLELISGLTGLVSLNVSNSRITSAGL 462
              L L      L  +N+S   +T  GL
Sbjct: 562 DGMLPLAQFSHNLKQINLSYCSVTDVGL 589


>gi|451981898|ref|ZP_21930236.1| hypothetical protein NITGR_710030 [Nitrospina gracilis 3/211]
 gi|451760903|emb|CCQ91508.1| hypothetical protein NITGR_710030 [Nitrospina gracilis 3/211]
          Length = 401

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 131/315 (41%), Gaps = 65/315 (20%)

Query: 181 NLKSLQISCSKVTDSGIAYL------KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           +L +L    +K+ DSG+A L      + L++L + N +    +A  +     L +L YL 
Sbjct: 23  DLSTLDFHFTKLGDSGVAELAKSRSVRNLRRLIIPNQKLSSESARVIAESENLSNLQYLK 82

Query: 235 LNRCQLSDDGCEKFSK---IGSLKVLNLGFNEITDECLVHL---KGLTNLESLNLDSCGI 288
           L + +L D+GC   S+   +  LK L L +N+I  E + HL     L NL SL L    I
Sbjct: 83  LYKNKLGDEGCRHISQSRNMEQLKSLRLAWNDIGPEGVKHLCESSNLQNLTSLVLSENPI 142

Query: 289 GDEGLVNLTGLCNLKCLELSD------TQVGSSGLRHLSGLTNLESINLSFTGIS----- 337
           GDEG  +L    NL  LE+ D      T  G+  L       NL+ ++LS   ++     
Sbjct: 143 GDEGARHLAVCQNLPSLEMLDLKKSEITDDGALALAESKNYINLQRLDLSANKLTQKGKD 202

Query: 338 -----------------DGS----------------LRKLAGLSSLKSLNLDARQITDTG 364
                            DG                 + +  GL  LK L L+   IT  G
Sbjct: 203 AIKVFLTLNMIRKRLSDDGETLDLSKLNLGDVEAKVVSEFEGLKDLKKLYLEINHITPVG 262

Query: 365 ---LAALTSLTGLTHLDLFGARITDSGAAYL---RNFKNLRSLEICGGGLTDAGVKHIKD 418
              LA    L  LT L L    I D+G A +       NL  L I   G+T+ G+K I D
Sbjct: 263 AGYLAGSEYLKNLTFLSLDHNHIDDAGLAAIAASEYMANLEVLMIEHNGITNEGLKAIAD 322

Query: 419 ---LSSLTLLNLSQN 430
              +++L  L L  N
Sbjct: 323 SEHMANLVRLYLDDN 337



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 103/257 (40%), Gaps = 62/257 (24%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
            +L S+ LS + + D G  HL  C NL SL+                       L  ++ 
Sbjct: 130 QNLTSLVLSENPIGDEGARHLAVCQNLPSLEM----------------------LDLKK- 166

Query: 117 NAITAQGMKAFA---GLINLVKLDLERCTRIHGGLVNLKGLMKL-----------ESLNI 162
           + IT  G  A A     INL +LDL        G   +K  + L           E+L++
Sbjct: 167 SEITDDGALALAESKNYINLQRLDLSANKLTQKGKDAIKVFLTLNMIRKRLSDDGETLDL 226

Query: 163 KWCNCITDSDMKPLS---GLTNLKSLQISCSKVTDSGIAYLKG---LQKLTLLNLEGCPV 216
              N + D + K +S   GL +LK L +  + +T  G  YL G   L+ LT L+L+   +
Sbjct: 227 SKLN-LGDVEAKVVSEFEGLKDLKKLYLEINHITPVGAGYLAGSEYLKNLTFLSLDHNHI 285

Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
             A L +++A  S +  NL    +  +G           + N G   I D      + + 
Sbjct: 286 DDAGLAAIAA--SEYMANLEVLMIEHNG-----------ITNEGLKAIADS-----EHMA 327

Query: 277 NLESLNLDSCGIGDEGL 293
           NL  L LD     +EGL
Sbjct: 328 NLVRLYLDDNPFNEEGL 344


>gi|406939756|gb|EKD72712.1| hypothetical protein ACD_45C00605G0001 [uncultured bacterium]
          Length = 541

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 93/198 (46%)

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           LNL    +   G    SK  +L  L+L  N+I D         T L  L + +  IG EG
Sbjct: 69  LNLEMNHIGPKGAALLSKNKTLSRLDLSNNQIGDAGASAFSKNTTLTELYIIANAIGPEG 128

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
              L+   NL+ L + D  +GSSG   L+ + N++ I+L    I D  +   +  +SLKS
Sbjct: 129 AKGLSQNKNLRILLIGDNHIGSSGAISLANMRNIQRISLMNNDIDDDGIIPYSKNTSLKS 188

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
           + L+   ITD G   LT+   L  + L    I D GA  L   K + SL++    ++  G
Sbjct: 189 IALNKNHITDKGAKVLTNSISLKEIWLSSNEIGDEGAISLAYNKYITSLDVSNNHISTIG 248

Query: 413 VKHIKDLSSLTLLNLSQN 430
           +K ++   ++T L  + N
Sbjct: 249 IKALQQNKNITELETTGN 266



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 114/463 (24%), Positives = 197/463 (42%), Gaps = 63/463 (13%)

Query: 38  LGQYPGVN--DKWMDVIASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDF 88
           L QYP V+  +  M+ I  +G++LLS       +DLS + + D+G       + L  L  
Sbjct: 60  LQQYPKVDTLNLEMNHIGPKGAALLSKNKTLSRLDLSNNQIGDAGASAFSKNTTLTEL-- 117

Query: 89  NFCIQISDGGLEHLRGLSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLERCTRIHG 146
              I  +  G E  +GLS   +L      +N I + G  + A + N+ ++ L        
Sbjct: 118 --YIIANAIGPEGAKGLSQNKNLRILLIGDNHIGSSGAISLANMRNIQRISLMNNDIDDD 175

Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
           G++       L+S+ +   N ITD   K L+   +LK + +S +++ D G   L   + +
Sbjct: 176 GIIPYSKNTSLKSIALNK-NHITDKGAKVLTNSISLKEIWLSSNEIGDEGAISLAYNKYI 234

Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
           T L++    ++   + +L         N N  +L   G          K  +L FN+I  
Sbjct: 235 TSLDVSNNHISTIGIKALQQ-------NKNITELETTGNLD-------KPPSLCFNDIDK 280

Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC----LELSDTQVGSSGLRHLSG 322
              V ++  + +  LNL SC + D  +  +T   NL      L++S+ ++GS+G   L  
Sbjct: 281 RVNVSVEDPS-IVRLNLYSCELRDADISFVTSYLNLHPYINFLQISNNKIGSNGAILLGQ 339

Query: 323 LTNLESINLS-----------FTG-------------ISDGSLRKLAGLSSLKSLNLDAR 358
              L+++N+S           F+              + +   + LA  + L  LN+   
Sbjct: 340 NKTLKTLNISNNLLDSRSAEAFSKNTTLIRLDLEGNHLGENGAKILANNNVLDVLNISKN 399

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
            + D G AALT +  L  L     +I+D G +    F     L + G  ++  G   I  
Sbjct: 400 YVGDDGFAALTKMKSLKILIADDNQISDLGVSSPFLF---HELYLSGNNISSIGADMISH 456

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
             SLT L LS N  L D    +++    ++SLN++ + I S G
Sbjct: 457 NPSLTDLGLSDNY-LGDDGATILARNKSIISLNLNYNEIGSTG 498



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 160/363 (44%), Gaps = 17/363 (4%)

Query: 51  VIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
           +  S+ +SL S+ L+ + +TD G   L +  +L+ +  +   +I D G   L     +TS
Sbjct: 178 IPYSKNTSLKSIALNKNHITDKGAKVLTNSISLKEIWLS-SNEIGDEGAISLAYNKYITS 236

Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLD----LERCTRIHGGLVNLKGLMKLESLNIKWCN 166
           L    NN I+  G+KA     N+ +L+    L++   +    ++ +  + +E  +I   N
Sbjct: 237 LDVS-NNHISTIGIKALQQNKNITELETTGNLDKPPSLCFNDIDKRVNVSVEDPSIVRLN 295

Query: 167 CIT----DSDMKPLSGLTNLKS----LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
             +    D+D+  ++   NL      LQIS +K+  +G   L   + L  LN+    + +
Sbjct: 296 LYSCELRDADISFVTSYLNLHPYINFLQISNNKIGSNGAILLGQNKTLKTLNISNNLLDS 355

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
              ++ S   +L  L+L    L ++G +  +    L VLN+  N + D+    L  + +L
Sbjct: 356 RSAEAFSKNTTLIRLDLEGNHLGENGAKILANNNVLDVLNISKNYVGDDGFAALTKMKSL 415

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
           + L  D   I D G+   +       L LS   + S G   +S   +L  + LS   + D
Sbjct: 416 KILIADDNQISDLGV---SSPFLFHELYLSGNNISSIGADMISHNPSLTDLGLSDNYLGD 472

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
                LA   S+ SLNL+  +I  TG  A+     L  L++    I   G A L N K L
Sbjct: 473 DGATILARNKSIISLNLNYNEIGSTGAIAIAQNIILRDLNIAHNHICSIGLAALYNNKTL 532

Query: 399 RSL 401
             L
Sbjct: 533 EKL 535



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 139/314 (44%), Gaps = 16/314 (5%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N I D+     S  T L  L I  + +   G   L   + L +L +    + ++   SL+
Sbjct: 98  NQIGDAGASAFSKNTTLTELYIIANAIGPEGAKGLSQNKNLRILLIGDNHIGSSGAISLA 157

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            + ++  ++L    + DDG   +SK  SLK + L  N ITD+    L    +L+ + L S
Sbjct: 158 NMRNIQRISLMNNDIDDDGIIPYSKNTSLKSIALNKNHITDKGAKVLTNSISLKEIWLSS 217

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS---GLTNLESI-------NLSFTG 335
             IGDEG ++L     +  L++S+  + + G++ L     +T LE+        +L F  
Sbjct: 218 NEIGDEGAISLAYNKYITSLDVSNNHISTIGIKALQQNKNITELETTGNLDKPPSLCFND 277

Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL----THLDLFGARITDSGAAY 391
           I D  +       S+  LNL + ++ D  ++ +TS   L      L +   +I  +GA  
Sbjct: 278 I-DKRVNVSVEDPSIVRLNLYSCELRDADISFVTSYLNLHPYINFLQISNNKIGSNGAIL 336

Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
           L   K L++L I    L     +     ++L  L+L  N +L +   ++++    L  LN
Sbjct: 337 LGQNKTLKTLNISNNLLDSRSAEAFSKNTTLIRLDLEGN-HLGENGAKILANNNVLDVLN 395

Query: 452 VSNSRITSAGLRHL 465
           +S + +   G   L
Sbjct: 396 ISKNYVGDDGFAAL 409



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 144/326 (44%), Gaps = 15/326 (4%)

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
           L+   K+++LN++  N I       LS    L  L +S +++ D+G +       LT L 
Sbjct: 60  LQQYPKVDTLNLEM-NHIGPKGAALLSKNKTLSRLDLSNNQIGDAGASAFSKNTTLTELY 118

Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
           +    +       LS   +L  L +    +   G    + + +++ ++L  N+I D+ ++
Sbjct: 119 IIANAIGPEGAKGLSQNKNLRILLIGDNHIGSSGAISLANMRNIQRISLMNNDIDDDGII 178

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG---LRHLSGLTNLE 327
                T+L+S+ L+   I D+G   LT   +LK + LS  ++G  G   L +   +T+L+
Sbjct: 179 PYSKNTSLKSIALNKNHITDKGAKVLTNSISLKEIWLSSNEIGDEGAISLAYNKYITSLD 238

Query: 328 SINLSFTGISDGSLRKLAGLSSLKSL-NLDARQI-----TDTGLAALTSLTGLTHLDLFG 381
             N   + I   +L++   ++ L++  NLD          D  +        +  L+L+ 
Sbjct: 239 VSNNHISTIGIKALQQNKNITELETTGNLDKPPSLCFNDIDKRVNVSVEDPSIVRLNLYS 298

Query: 382 ARITDSGAAYLRNFKNLRS----LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
             + D+  +++ ++ NL      L+I    +   G   +    +L  LN+S N  L  ++
Sbjct: 299 CELRDADISFVTSYLNLHPYINFLQISNNKIGSNGAILLGQNKTLKTLNISNNL-LDSRS 357

Query: 438 LELISGLTGLVSLNVSNSRITSAGLR 463
            E  S  T L+ L++  + +   G +
Sbjct: 358 AEAFSKNTTLIRLDLEGNHLGENGAK 383


>gi|83629969|gb|ABC26646.1| internalin E [Listeria monocytogenes]
 gi|85679293|gb|ABC72062.1| InlE [Listeria monocytogenes]
          Length = 498

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 117/248 (47%), Gaps = 44/248 (17%)

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           LTNL  L+++ +++TD  ++ L  L K+T L L G P     L  +SAL  L        
Sbjct: 94  LTNLSELELTDNQITD--VSPLANLTKITELGLSGNP-----LKDVSALAGL-------- 138

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
                         SLK+L+L + +ITD  +  L GLTNL+ LNLD   I D  +  L  
Sbjct: 139 -------------KSLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAA 181

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
           L NL+ L L  TQV  S L  L+ L+ L  +N     +SD  +  LA LSSL  + L   
Sbjct: 182 LTNLQTLSLGYTQV--SDLTPLANLSKLTILNAENCKVSD--ISPLASLSSLTEVYLREN 237

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAG 412
           QI+D  ++ L ++  L+ ++L    IT+    Y          K L S  I    ++D G
Sbjct: 238 QISD--VSPLANIPNLSIIELTDQIITNQPVYYQNKIIVPNVIKGLSSELIAPDTISDNG 295

Query: 413 VKHIKDLS 420
                DL+
Sbjct: 296 AYTSPDLT 303



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 89/169 (52%), Gaps = 27/169 (15%)

Query: 274 GLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLT 324
           G+T +E +    NL    + D  + +++ L NL  +    T++G SG     +  L+GL 
Sbjct: 84  GITTIEGMQYLTNLSELELTDNQITDVSPLANLTKI----TELGLSGNPLKDVSALAGLK 139

Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
           +L+ ++L +T I+D  +  LAGL++L+ LNLD  QITD  ++ L +LT L  L L   ++
Sbjct: 140 SLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAALTNLQTLSLGYTQV 195

Query: 385 TDSGAAYLRNFKNLRSLEICGG---GLTDAGVKHIKDLSSLTLLNLSQN 430
           +D     L    NL  L I       ++D  +  +  LSSLT + L +N
Sbjct: 196 SD-----LTPLANLSKLTILNAENCKVSD--ISPLASLSSLTEVYLREN 237



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 116/262 (44%), Gaps = 46/262 (17%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
           +Q   + Q   +N+ + D + +     L   L  +DVTD           +   D +   
Sbjct: 30  VQAAVIEQPTPINEIFTDPVVADNVKTL---LEKADVTDE----------VTQTDLDSIT 76

Query: 93  QIS--DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL-DLERCTRIHGGLV 149
           Q+S    G+  + G+  LT+LS      +T   +   + L NL K+ +L         + 
Sbjct: 77  QLSAKSAGITTIEGMQYLTNLSELE---LTDNQITDVSPLANLTKITELGLSGNPLKDVS 133

Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQ---- 204
            L GL  L+ L++ + +    +D+  L+GLTNL+ L +  +++TD S +A L  LQ    
Sbjct: 134 ALAGLKSLKMLHLIYTDI---TDVTSLAGLTNLQELNLDINQITDISPLAALTNLQTLSL 190

Query: 205 ---------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
                          KLT+LN E C V  + +  L++L SL  + L   Q+SD      +
Sbjct: 191 GYTQVSDLTPLANLSKLTILNAENCKV--SDISPLASLSSLTEVYLRENQISD--VSPLA 246

Query: 250 KIGSLKVLNLGFNEITDECLVH 271
            I +L ++ L    IT++ + +
Sbjct: 247 NIPNLSIIELTDQIITNQPVYY 268



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 100/211 (47%), Gaps = 41/211 (19%)

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
             NEI  + +V      N+++L L+   + DE  V  T L ++   +LS    G + +  
Sbjct: 40  PINEIFTDPVVA----DNVKTL-LEKADVTDE--VTQTDLDSIT--QLSAKSAGITTIEG 90

Query: 320 LSGLTNLESINLSFTGISDGS--------------------LRKLAGLSSLKSLNLDARQ 359
           +  LTNL  + L+   I+D S                    +  LAGL SLK L+L    
Sbjct: 91  MQYLTNLSELELTDNQITDVSPLANLTKITELGLSGNPLKDVSALAGLKSLKMLHLIYTD 150

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
           ITD  + +L  LT L  L+L   +ITD   + L    NL++L +    ++D  +  + +L
Sbjct: 151 ITD--VTSLAGLTNLQELNLDINQITD--ISPLAALTNLQTLSLGYTQVSD--LTPLANL 204

Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
           S LT+LN ++NC ++D     IS L  L SL
Sbjct: 205 SKLTILN-AENCKVSD-----ISPLASLSSL 229


>gi|448825651|ref|YP_007418582.1| putative F-box/LRR-repeat protein [Megavirus lba]
 gi|444236836|gb|AGD92606.1| putative F-box/LRR-repeat protein [Megavirus lba]
          Length = 559

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 114/466 (24%), Positives = 196/466 (42%), Gaps = 133/466 (28%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
            N+ S++  R N IT + ++   G+    K++L  C  I G     K L   E++N+  C
Sbjct: 65  QNIKSINLSRTN-ITDKELQFLCGI---TKINLYCCKNITGS--GFKYLQLAENINLSGC 118

Query: 166 NCITDSDMKPLSGL-----------------------------------TNLKSLQISCS 190
           N I  S+++ LS +                                   T +K + +S +
Sbjct: 119 NQIIGSELRYLSNIVKINLSRTNIDDQAIEYLVFGQKIDGNKEILIQPQTKIKFIDLSFT 178

Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLF-------------YLN-- 234
           K+T+  I+YL  ++   ++N+  C  VT++CL  L  +  ++             YLN  
Sbjct: 179 KITNYSISYLSNVK---IININSCEFVTSSCLQYLHNITHIYMNTYNVIIGDNIKYLNKI 235

Query: 235 ----LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL---ESLNLDSCG 287
               LN   LSD+  E    I  L++ N   ++IT + L  LK L  L    S N+D+  
Sbjct: 236 KLLVLNDHTLSDNQLEYIQNIEHLEIYNAS-DKITHQGLQKLKNLKILSLRHSYNIDTIS 294

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAG 346
                 + +  L N  C +++D+         L  L +LE+INLS+   I+D  L+ L  
Sbjct: 295 FIPTNKIRILDLKN--CHQVTDSS--------LQYLPHLETINLSWCYKITDNGLKNLQH 344

Query: 347 LSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR------ 399
           ++++   NL    +ITD GL  L+    +     +  +ITD G  +L+N KN++      
Sbjct: 345 VTNI---NLSGCHRITDNGLVYLSKADSIN--ISYCIKITDDGLKHLQNVKNIKLGYHST 399

Query: 400 --------------------SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
                                ++     +TD G+ ++ +  SL+LL      N+TD  L+
Sbjct: 400 SDIYMIEYFEYDFSKEKYIKEIKNTKQLITDIGLSYLINTQSLSLLYCE---NITDDGLQ 456

Query: 440 LISGL-------------TGLVSL------NVSNSRITSAGLRHLN 466
            +S +             TGL  L      N+SN R+  + L++LN
Sbjct: 457 YLSKIKSISINNCPKIIGTGLKYLSDCQKINLSNVRLCRSSLKYLN 502



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 161/343 (46%), Gaps = 40/343 (11%)

Query: 64  LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
           L+   ++D+ L ++++  +L+   +N   +I+  GL+ L+   NL  LS R +  I    
Sbjct: 240 LNDHTLSDNQLEYIQNIEHLEI--YNASDKITHQGLQKLK---NLKILSLRHSYNIDTI- 293

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
             +F     +  LDL+ C ++     +L+ L  LE++N+ WC  ITD+ +K L  +TN+ 
Sbjct: 294 --SFIPTNKIRILDLKNCHQVTDS--SLQYLPHLETINLSWCYKITDNGLKNLQHVTNIN 349

Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGS--LFYLNLNRCQL 240
                C ++TD+G+ Y   L K   +N+  C  +T   L  L  + +  L Y + +   +
Sbjct: 350 LS--GCHRITDNGLVY---LSKADSINISYCIKITDDGLKHLQNVKNIKLGYHSTSDIYM 404

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
            +     FSK   +K +      ITD   + L  L N +SL+L  C  I D+GL  L+  
Sbjct: 405 IEYFEYDFSKEKYIKEIKNTKQLITD---IGLSYLINTQSLSLLYCENITDDGLQYLSK- 460

Query: 300 CNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN---- 354
             +K + +++  ++  +GL++LS   + + INLS   +   SL+ L   S +K  N    
Sbjct: 461 --IKSISINNCPKIIGTGLKYLS---DCQKINLSNVRLCRSSLKYLNLFSKIKINNNFTD 515

Query: 355 ------LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
                   A++I  +G   +T   GL HL            +Y
Sbjct: 516 DDLKYLYRAKKIKLSGFNKITK-NGLKHLHQVDKLFIQKSISY 557



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 147/350 (42%), Gaps = 86/350 (24%)

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTL-------------------LNLEGCPVTAACL 221
           N+KS+ +S + +TD  + +L G+ K+ L                   +NL GC       
Sbjct: 66  NIKSINLSRTNITDKELQFLCGITKINLYCCKNITGSGFKYLQLAENINLSGCNQIIG-- 123

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKF---SKIG-----------SLKVLNLGFNEITDE 267
             L  L ++  +NL+R  + D   E      KI             +K ++L F +IT+ 
Sbjct: 124 SELRYLSNIVKINLSRTNIDDQAIEYLVFGQKIDGNKEILIQPQTKIKFIDLSFTKITNY 183

Query: 268 CLVHLKGLTNLESLNLDSCG------------------------IGDEGLVNLTGLCNLK 303
            + +   L+N++ +N++SC                         IGD    N+  L  +K
Sbjct: 184 SISY---LSNVKIININSCEFVTSSCLQYLHNITHIYMNTYNVIIGD----NIKYLNKIK 236

Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL---KSLNLDARQI 360
            L L+D  +  + L ++  + +LE  N S   I+   L+KL  L  L    S N+D    
Sbjct: 237 LLVLNDHTLSDNQLEYIQNIEHLEIYNAS-DKITHQGLQKLKNLKILSLRHSYNIDTISF 295

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
             T    +  L           ++TDS   YL + + + +L  C   +TD G   +K+L 
Sbjct: 296 IPTNKIRILDLKN-------CHQVTDSSLQYLPHLETI-NLSWC-YKITDNG---LKNLQ 343

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RITSAGLRHLNHAR 469
            +T +NLS    +TD  L  +S      S+N+S   +IT  GL+HL + +
Sbjct: 344 HVTNINLSGCHRITDNGLVYLSKAD---SINISYCIKITDDGLKHLQNVK 390


>gi|12581504|gb|AAG59625.1| GU1 [Trypanosoma brucei]
 gi|261333153|emb|CBH16148.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 846

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 109/445 (24%), Positives = 192/445 (43%), Gaps = 79/445 (17%)

Query: 27  AFRDC-ALQDLCLGQYPGVND-KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
           +F  C  LQ L L     V+D +W+  +    + L ++DLS ++V    L  L+ C  L 
Sbjct: 364 SFVHCRQLQQLKLSCCRRVSDVRWLAAL----TCLRTLDLSHTNVRSRWLESLRACRYLV 419

Query: 85  SLDFNFC---IQIS----------------DGGLEHLRGLSNLTSLSFRR-NNAITAQGM 124
            L+  +C   +++S                D G ++L  +     L+F    +  + + +
Sbjct: 420 ELNVAYCRDVVEVSFLSELRLLKHLDLSGTDIGEQNLDPIGQCEGLTFLLLKDCSSVKDL 479

Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
                L  LVKLD ER   +   +  +    KLE L+ ++C+ +TD  +K L GL NLK+
Sbjct: 480 HFLETLRELVKLDTERTGIMDANVCQVVACKKLEFLSFRYCHLLTD--VKCLEGLRNLKT 537

Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
           L ++ + VT+ GI+ L     L  +++ E C +T   L+ L  L +L  +  ++  L+D 
Sbjct: 538 LDLAGTNVTNEGISSLPKCVSLEYVDVSECCLITH--LEFLRPLPNLQQVVADQMNLTDI 595

Query: 244 G---------------CEKFSKIGSLK-------------VLNLGFNEITDEC------- 268
           G                ++   +G ++             + N G   +   C       
Sbjct: 596 GGLTGAPSLRRVTLNESKRLGTVGEVRLPYLQELSLRKSTISNAGIRSLLASCRSLQHLD 655

Query: 269 ---------LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
                    L  L  L NL  L L +  +  E + ++    NL+ L++++     + +  
Sbjct: 656 MQHCHSVTELSALSQLPNLRELLLRNIRVTGEFMTHIASCVNLRKLQMTEC-ADITDVNC 714

Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLD 378
           LS L +LE I+LS T ++   ++ L+   +L+ LNL + R +T+     L  L  L  L 
Sbjct: 715 LSALQSLEDIDLSRTSVTTEGIKGLSKCYALRKLNLSECRYVTNVN--CLGKLPFLRELH 772

Query: 379 LFGARITDSGAAYLRNFKNLRSLEI 403
           L    +TD G A L N   L +L +
Sbjct: 773 LEKTNVTDKGIAGLSNCIQLETLAL 797



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 109/426 (25%), Positives = 206/426 (48%), Gaps = 31/426 (7%)

Query: 49  MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL 108
           ++ I+S GS L+ +DL  + V D+G      C  LQ L  + C ++SD  +  L  L+ L
Sbjct: 338 VEFISSLGS-LVELDLRDNWVGDAGCASFVHCRQLQQLKLSCCRRVSD--VRWLAALTCL 394

Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
            +L     N + ++ +++      LV+L++  C  +   +  L  L  L+ L++   + I
Sbjct: 395 RTLDLSHTN-VRSRWLESLRACRYLVELNVAYCRDV-VEVSFLSELRLLKHLDLSGTD-I 451

Query: 169 TDSDMKPL---SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
            + ++ P+    GLT L  L   CS V D  + +L+ L++L  L+ E   +  A +  + 
Sbjct: 452 GEQNLDPIGQCEGLTFL--LLKDCSSVKD--LHFLETLRELVKLDTERTGIMDANVCQVV 507

Query: 226 ALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
           A   L +L+   C  L+D  C     + +LK L+L    +T+E +  L    +LE +++ 
Sbjct: 508 ACKKLEFLSFRYCHLLTDVKC--LEGLRNLKTLDLAGTNVTNEGISSLPKCVSLEYVDVS 565

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI--SDGSLR 342
            C +    L  L  L NL+  ++   Q+  + +  L+G  +L  + L+ +    + G +R
Sbjct: 566 ECCLITH-LEFLRPLPNLQ--QVVADQMNLTDIGGLTGAPSLRRVTLNESKRLGTVGEVR 622

Query: 343 KLAGLSSLKSLNLDARQITDTGLAA-LTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRS 400
               L  L+ L+L    I++ G+ + L S   L HLD+     +T+  A  L    NLR 
Sbjct: 623 ----LPYLQELSLRKSTISNAGIRSLLASCRSLQHLDMQHCHSVTELSA--LSQLPNLRE 676

Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
           L +    +T   + HI    +L  L +++  ++TD  +  +S L  L  +++S + +T+ 
Sbjct: 677 LLLRNIRVTGEFMTHIASCVNLRKLQMTECADITD--VNCLSALQSLEDIDLSRTSVTTE 734

Query: 461 GLRHLN 466
           G++ L+
Sbjct: 735 GIKGLS 740



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 104/431 (24%), Positives = 182/431 (42%), Gaps = 68/431 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L S+ L  + +++  + +  +C+NL+ +  + C  +    LE    L  LT LS   N  
Sbjct: 206 LRSLTLFATPLSNQIMSYFCECTNLERVVVDSCCGLV--SLECFAALQRLTHLSVL-NCT 262

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT +G+   +   +L  + L+ C             MKL SLN              L  
Sbjct: 263 ITDEGLPPISKCFSLQYVMLDNC-------------MKLRSLNC-------------LGS 296

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           L NL++L +S +++ + G+  L+ L+ L +L         A ++ +S+LGSL  L+L   
Sbjct: 297 LRNLRTLIVSRNRIPEEGVQGLRKLRDLEVLRFSVFNRPTA-VEFISSLGSLVELDLRDN 355

Query: 239 QLSDDGCEKF-----------------------SKIGSLKVLNLGFNEITDECLVHLKGL 275
            + D GC  F                       + +  L+ L+L    +    L  L+  
Sbjct: 356 WVGDAGCASFVHCRQLQQLKLSCCRRVSDVRWLAALTCLRTLDLSHTNVRSRWLESLRAC 415

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
             L  LN+  C    E +  L+ L  LK L+LS T +G   L  +      +   L+F  
Sbjct: 416 RYLVELNVAYCRDVVE-VSFLSELRLLKHLDLSGTDIGEQNLDPIG-----QCEGLTFLL 469

Query: 336 ISD-GSLRKLAGLSSLKSL-NLDARQ--ITDTGLAALTSLTGLTHLDL-FGARITDSGAA 390
           + D  S++ L  L +L+ L  LD  +  I D  +  + +   L  L   +   +TD    
Sbjct: 470 LKDCSSVKDLHFLETLRELVKLDTERTGIMDANVCQVVACKKLEFLSFRYCHLLTDVKC- 528

Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
            L   +NL++L++ G  +T+ G+  +    SL  +++S+ C +T   LE +  L  L  +
Sbjct: 529 -LEGLRNLKTLDLAGTNVTNEGISSLPKCVSLEYVDVSECCLITH--LEFLRPLPNLQQV 585

Query: 451 NVSNSRITSAG 461
                 +T  G
Sbjct: 586 VADQMNLTDIG 596



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 76/180 (42%), Gaps = 29/180 (16%)

Query: 59  LLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           L  + L  S ++++G+  L   C +LQ LD   C  +++  L  L  L NL  L  R N 
Sbjct: 626 LQELSLRKSTISNAGIRSLLASCRSLQHLDMQHCHSVTE--LSALSQLPNLRELLLR-NI 682

Query: 118 AITAQGMKAFAGLINLVKLDLERC--------------------TRIHGGLVNLKGLMK- 156
            +T + M   A  +NL KL +  C                    +R       +KGL K 
Sbjct: 683 RVTGEFMTHIASCVNLRKLQMTECADITDVNCLSALQSLEDIDLSRTSVTTEGIKGLSKC 742

Query: 157 --LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
             L  LN+  C  +T+ +   L  L  L+ L +  + VTD GIA L    +L  L L  C
Sbjct: 743 YALRKLNLSECRYVTNVNC--LGKLPFLRELHLEKTNVTDKGIAGLSNCIQLETLALTKC 800


>gi|290979250|ref|XP_002672347.1| predicted protein [Naegleria gruberi]
 gi|284085923|gb|EFC39603.1| predicted protein [Naegleria gruberi]
          Length = 356

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 129/280 (46%), Gaps = 32/280 (11%)

Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
           +L  + ++T+ N    P   A +  L A+  L  L+++  ++  +G     ++ +L  L+
Sbjct: 76  FLDNIMEVTVEN----PGLIADVRFLQAVKKLTRLSIDYNRVGVEGASFIGEMKNLTSLS 131

Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
           + FN I  E    +  L NL SL ++   +G EG  +++ L  L CL++S   +G  G +
Sbjct: 132 ILFNGIGPEGAKSISKLENLTSLFINVNQLGSEGTKSISELKQLTCLDISGNHLGPEGTK 191

Query: 319 HLSGLTNLES------------------------INLSFTGISDGSLRKLAGLSSLKSLN 354
           ++  LT L                          +N+S+  I     + L+ +  L +L 
Sbjct: 192 YIGKLTQLTQLIICNNEIYSERLKFIGELRQLTILNVSYNYIDSEGAKYLSEMKQLTTLR 251

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV 413
           +D+  I   G  ++ +L  LT+L++    I D G   +    KNL+ L     G+ D G 
Sbjct: 252 IDSNNIGPEGAKSICTLQNLTNLNVDSNAIGDEGILSISEKMKNLKYLNASMNGIGDEGA 311

Query: 414 KHIKDLSSLTLLNLSQNCN-LTDKTLELISGLTGLVSLNV 452
           + I  ++ LT LN+S  CN + +  L+L  G+  LV L +
Sbjct: 312 QSILSMTQLTNLNIS--CNKIGENVLKLFGGMKQLVILEI 349



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 110/229 (48%), Gaps = 3/229 (1%)

Query: 153 GLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
           G MK L SL+I + N I     K +S L NL SL I+ +++   G   +  L++LT L++
Sbjct: 122 GEMKNLTSLSILF-NGIGPEGAKSISKLENLTSLFINVNQLGSEGTKSISELKQLTCLDI 180

Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
            G  +       +  L  L  L +   ++  +  +   ++  L +LN+ +N I  E   +
Sbjct: 181 SGNHLGPEGTKYIGKLTQLTQLIICNNEIYSERLKFIGELRQLTILNVSYNYIDSEGAKY 240

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESIN 330
           L  +  L +L +DS  IG EG  ++  L NL  L +    +G  G+  +S  + NL+ +N
Sbjct: 241 LSEMKQLTTLRIDSNNIGPEGAKSICTLQNLTNLNVDSNAIGDEGILSISEKMKNLKYLN 300

Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
            S  GI D   + +  ++ L +LN+   +I +  L     +  L  L++
Sbjct: 301 ASMNGIGDEGAQSILSMTQLTNLNISCNKIGENVLKLFGGMKQLVILEI 349



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 98/215 (45%)

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
           +  L  L++ +N +  E    +  + NL SL++   GIG EG  +++ L NL  L ++  
Sbjct: 100 VKKLTRLSIDYNRVGVEGASFIGEMKNLTSLSILFNGIGPEGAKSISKLENLTSLFINVN 159

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
           Q+GS G + +S L  L  +++S   +     + +  L+ L  L +   +I    L  +  
Sbjct: 160 QLGSEGTKSISELKQLTCLDISGNHLGPEGTKYIGKLTQLTQLIICNNEIYSERLKFIGE 219

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           L  LT L++    I   GA YL   K L +L I    +   G K I  L +LT LN+  N
Sbjct: 220 LRQLTILNVSYNYIDSEGAKYLSEMKQLTTLRIDSNNIGPEGAKSICTLQNLTNLNVDSN 279

Query: 431 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
               +  L +   +  L  LN S + I   G + +
Sbjct: 280 AIGDEGILSISEKMKNLKYLNASMNGIGDEGAQSI 314



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 119/250 (47%), Gaps = 6/250 (2%)

Query: 85  SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
           S+D+N   ++   G   +  + NLTSLS   N  I  +G K+ + L NL  L +      
Sbjct: 107 SIDYN---RVGVEGASFIGEMKNLTSLSILFN-GIGPEGAKSISKLENLTSLFINVNQLG 162

Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
             G  ++  L +L  L+I   N +     K +  LT L  L I  +++    + ++  L+
Sbjct: 163 SEGTKSISELKQLTCLDIS-GNHLGPEGTKYIGKLTQLTQLIICNNEIYSERLKFIGELR 221

Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
           +LT+LN+    + +     LS +  L  L ++   +  +G +    + +L  LN+  N I
Sbjct: 222 QLTILNVSYNYIDSEGAKYLSEMKQLTTLRIDSNNIGPEGAKSICTLQNLTNLNVDSNAI 281

Query: 265 TDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
            DE ++ + + + NL+ LN    GIGDEG  ++  +  L  L +S  ++G + L+   G+
Sbjct: 282 GDEGILSISEKMKNLKYLNASMNGIGDEGAQSILSMTQLTNLNISCNKIGENVLKLFGGM 341

Query: 324 TNLESINLSF 333
             L  + + F
Sbjct: 342 KQLVILEIGF 351


>gi|224140535|ref|XP_002323638.1| predicted protein [Populus trichocarpa]
 gi|222868268|gb|EEF05399.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 123/432 (28%), Positives = 189/432 (43%), Gaps = 73/432 (16%)

Query: 43  GVNDKWMDVIASQGSSLLSVDLSGSDVTDS------GLIHLKD----------------- 79
           GV+D  + +IA +   + S+DLS   +T+        L HL+D                 
Sbjct: 192 GVSDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDIVLEGCFGIDDDSLAAL 251

Query: 80  ---CSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
              C ++++LD + C  IS  GL  L  G  +L  L+   +  +T     +   L  L  
Sbjct: 252 KHGCKSMKALDISSCQHISHVGLSSLISGAGSLQQLTLSYSCPVTLALANSLKRLSMLQS 311

Query: 136 LDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQISC-SKV 192
           + L+ C     GL  +    + L  L++  C  +TD  +  L +   +LK L I+C  K+
Sbjct: 312 VKLDGCAVTSAGLTAIGNWCITLSELSLSKCVGVTDEGLSSLVTKHKDLKKLDITCCRKI 371

Query: 193 TDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
           TD  IAY+      LT L +E C +  +           F L   RCQ            
Sbjct: 372 TDVSIAYITNSCTNLTSLRMESCTLVPS---------EAFVLIGQRCQF----------- 411

Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT 310
             L+ L+L  NEI DE L  +   + L SL L  C  I DEGL ++     +KC +L++ 
Sbjct: 412 --LEELDLTDNEIDDEGLKSISRCSKLSSLKLGICLNISDEGLSHV----GMKCSKLTEL 465

Query: 311 QV-GSSGLRHL------SGLTNLESINLSF-TGISDGSLRKLAGLSSLKSL-NLDARQIT 361
            +  S+G+  L       G   LE IN+S+   I+D SL  L+  S L +  +     IT
Sbjct: 466 DLYRSAGITDLGILAISRGCPGLEMINMSYCIDITDSSLLSLSKCSRLNTFESRGCPLIT 525

Query: 362 DTGLAAL-TSLTGLTHLDLFGAR-ITDSGAAYLRNF-KNLRSLEICGGGLTDAG---VKH 415
             GLAA+      L  LD+     I D+    L +F +NLR + +    +TD G   +  
Sbjct: 526 SLGLAAIAVGCKQLIKLDIKKCHNIGDAAMLPLAHFSQNLRQITLSYSSVTDVGLLALAS 585

Query: 416 IKDLSSLTLLNL 427
           I  L S+T+L+L
Sbjct: 586 ISCLQSMTVLHL 597



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 113/414 (27%), Positives = 182/414 (43%), Gaps = 65/414 (15%)

Query: 42  PGVNDKWMDVIASQ-GSSLLSVDLSGSDV-TDSGLIHLK-DCSNLQSLDFNFCIQISDGG 98
           P +ND  ++VI++    SL S+DLS S   + +GL+ L  +C NL S+D +   ++ D  
Sbjct: 87  PRINDNSLNVISNTCKDSLNSIDLSRSRFFSYNGLMSLASNCKNLVSIDLSNATELRDAA 146

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
              +  + NL  L   R   IT  G+   A                        G  KL 
Sbjct: 147 AAAVAEVKNLERLWLGRCKLITDMGIGCIA-----------------------VGCKKLR 183

Query: 159 SLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
            +++KWC  ++D  +  ++     ++SL +S   +T+  +  +  LQ L  + LEGC   
Sbjct: 184 LISLKWCIGVSDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDIVLEGCFGI 243

Query: 218 AACLDSLSAL----GSLFYLNLNRCQ-LSDDGCEK-FSKIGSLKVLNLGFN-EITDECLV 270
               DSL+AL     S+  L+++ CQ +S  G     S  GSL+ L L ++  +T     
Sbjct: 244 DD--DSLAALKHGCKSMKALDISSCQHISHVGLSSLISGAGSLQQLTLSYSCPVTLALAN 301

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
            LK L+ L+S+ LD C +   GL  +   C                         L  ++
Sbjct: 302 SLKRLSMLQSVKLDGCAVTSAGLTAIGNWC-----------------------ITLSELS 338

Query: 331 LS-FTGISDGSLRKLA-GLSSLKSLNLD-ARQITDTGLAALT-SLTGLTHLDLFGARITD 386
           LS   G++D  L  L      LK L++   R+ITD  +A +T S T LT L +    +  
Sbjct: 339 LSKCVGVTDEGLSSLVTKHKDLKKLDITCCRKITDVSIAYITNSCTNLTSLRMESCTLVP 398

Query: 387 SGAAYL--RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
           S A  L  +  + L  L++    + D G+K I   S L+ L L    N++D+ L
Sbjct: 399 SEAFVLIGQRCQFLEELDLTDNEIDDEGLKSISRCSKLSSLKLGICLNISDEGL 452



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 98/196 (50%), Gaps = 33/196 (16%)

Query: 51  VIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLT 109
           +I  +   L  +DL+ +++ D GL  +  CS L SL    C+ ISD GL H+    S LT
Sbjct: 404 LIGQRCQFLEELDLTDNEIDDEGLKSISRCSKLSSLKLGICLNISDEGLSHVGMKCSKLT 463

Query: 110 SLSFRRNNAITAQGMKAFA------GLINLVK-LDLE--------RCTRIHG-------- 146
            L   R+  IT  G+ A +       +IN+   +D+         +C+R++         
Sbjct: 464 ELDLYRSAGITDLGILAISRGCPGLEMINMSYCIDITDSSLLSLSKCSRLNTFESRGCPL 523

Query: 147 ----GLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSKVTDSG---I 197
               GL  +  G  +L  L+IK C+ I D+ M PL+  + NL+ + +S S VTD G   +
Sbjct: 524 ITSLGLAAIAVGCKQLIKLDIKKCHNIGDAAMLPLAHFSQNLRQITLSYSSVTDVGLLAL 583

Query: 198 AYLKGLQKLTLLNLEG 213
           A +  LQ +T+L+L+G
Sbjct: 584 ASISCLQSMTVLHLKG 599


>gi|71748370|ref|XP_823240.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
 gi|70832908|gb|EAN78412.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 846

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 109/445 (24%), Positives = 192/445 (43%), Gaps = 79/445 (17%)

Query: 27  AFRDC-ALQDLCLGQYPGVND-KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
           +F  C  LQ L L     V+D +W+  +    + L ++DLS ++V    L  L+ C  L 
Sbjct: 364 SFVHCRQLQQLKLSCCRRVSDVRWLAAL----TCLRTLDLSHTNVRSRWLESLRACRYLV 419

Query: 85  SLDFNFC---IQIS----------------DGGLEHLRGLSNLTSLSFRR-NNAITAQGM 124
            L+  +C   +++S                D G ++L  +     L+F    +  + + +
Sbjct: 420 ELNVAYCRDVVEVSFLSELRLLKHLDLSGTDIGEQNLDPIGRCEGLTFLLLKDCSSVKDL 479

Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
                L  LVKLD ER   +   +  +    KLE L+ ++C+ +TD  +K L GL NLK+
Sbjct: 480 HFLETLRELVKLDTERTGIMDANVCQVVACKKLEFLSFRYCHLLTD--VKCLEGLRNLKT 537

Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
           L ++ + VT+ GI+ L     L  +++ E C +T   L+ L  L +L  +  ++  L+D 
Sbjct: 538 LDLAGTNVTNEGISSLPKCVSLEYVDVSECCLITH--LEFLRPLPNLQQVVADQMNLTDI 595

Query: 244 G---------------CEKFSKIGSLK-------------VLNLGFNEITDEC------- 268
           G                ++   +G ++             + N G   +   C       
Sbjct: 596 GGLTGAPSLRRVTLNESKRLGTVGEVRLPYLQELSLRKSTISNAGIRSLLASCRSLQHLD 655

Query: 269 ---------LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
                    L  L  L NL  L L +  +  E + ++    NL+ L++++     + +  
Sbjct: 656 MQHCHSVTELSALSQLPNLRELLLRNIRVTGEFMTHIASCVNLRKLQMTEC-ADITDVNC 714

Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLD 378
           LS L +LE I+LS T ++   ++ L+   +L+ LNL + R +T+     L  L  L  L 
Sbjct: 715 LSALQSLEDIDLSRTSVTTEGIKGLSKCYALRKLNLSECRYVTNVN--CLGKLPFLRELH 772

Query: 379 LFGARITDSGAAYLRNFKNLRSLEI 403
           L    +TD G A L N   L +L +
Sbjct: 773 LEKTNVTDKGIAGLSNCIQLETLAL 797



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 109/426 (25%), Positives = 206/426 (48%), Gaps = 31/426 (7%)

Query: 49  MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL 108
           ++ I+S GS L+ +DL  + V D+G      C  LQ L  + C ++SD  +  L  L+ L
Sbjct: 338 VEFISSLGS-LVELDLRDNWVGDAGCASFVHCRQLQQLKLSCCRRVSD--VRWLAALTCL 394

Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
            +L     N + ++ +++      LV+L++  C  +   +  L  L  L+ L++   + I
Sbjct: 395 RTLDLSHTN-VRSRWLESLRACRYLVELNVAYCRDV-VEVSFLSELRLLKHLDLSGTD-I 451

Query: 169 TDSDMKPL---SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
            + ++ P+    GLT L  L   CS V D  + +L+ L++L  L+ E   +  A +  + 
Sbjct: 452 GEQNLDPIGRCEGLTFL--LLKDCSSVKD--LHFLETLRELVKLDTERTGIMDANVCQVV 507

Query: 226 ALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
           A   L +L+   C  L+D  C     + +LK L+L    +T+E +  L    +LE +++ 
Sbjct: 508 ACKKLEFLSFRYCHLLTDVKC--LEGLRNLKTLDLAGTNVTNEGISSLPKCVSLEYVDVS 565

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI--SDGSLR 342
            C +    L  L  L NL+  ++   Q+  + +  L+G  +L  + L+ +    + G +R
Sbjct: 566 ECCLITH-LEFLRPLPNLQ--QVVADQMNLTDIGGLTGAPSLRRVTLNESKRLGTVGEVR 622

Query: 343 KLAGLSSLKSLNLDARQITDTGLAA-LTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRS 400
               L  L+ L+L    I++ G+ + L S   L HLD+     +T+  A  L    NLR 
Sbjct: 623 ----LPYLQELSLRKSTISNAGIRSLLASCRSLQHLDMQHCHSVTELSA--LSQLPNLRE 676

Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
           L +    +T   + HI    +L  L +++  ++TD  +  +S L  L  +++S + +T+ 
Sbjct: 677 LLLRNIRVTGEFMTHIASCVNLRKLQMTECADITD--VNCLSALQSLEDIDLSRTSVTTE 734

Query: 461 GLRHLN 466
           G++ L+
Sbjct: 735 GIKGLS 740



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 171/408 (41%), Gaps = 61/408 (14%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L S+ L  + +++  + +  +C+NL+ +  + C  +    LE    L  LT LS   N  
Sbjct: 206 LRSLTLFATPLSNQIMSYFCECTNLERVVVDSCCGLV--SLECFAALQRLTHLSVL-NCT 262

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           IT +G+   +   +L  + L+ C             MKL SLN              L  
Sbjct: 263 ITDEGLPPISKCFSLQYVMLDNC-------------MKLRSLNC-------------LGS 296

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           L NL++L +S +++ + G+  L+ L+ L +L         A ++ +S+LGSL  L+L   
Sbjct: 297 LRNLRTLIVSRNRIPEEGVQGLRKLRDLEVLRFSVFNRPTA-VEFISSLGSLVELDLRDN 355

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
            + D GC  F                     VH + L  L+     SC      +  L  
Sbjct: 356 WVGDAGCASF---------------------VHCRQLQQLKL----SCCRRVSDVRWLAA 390

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA 357
           L  L+ L+LS T V S  L  L     L  +N+++   + + S   L+ L  LK L+L  
Sbjct: 391 LTCLRTLDLSHTNVRSRWLESLRACRYLVELNVAYCRDVVEVSF--LSELRLLKHLDLSG 448

Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
             I +  L  +    GLT L L     +     +L   + L  L+    G+ DA V  + 
Sbjct: 449 TDIGEQNLDPIGRCEGLTFL-LLKDCSSVKDLHFLETLRELVKLDTERTGIMDANVCQVV 507

Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
               L  L+      LTD  ++ + GL  L +L+++ + +T+ G+  L
Sbjct: 508 ACKKLEFLSFRYCHLLTD--VKCLEGLRNLKTLDLAGTNVTNEGISSL 553



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 76/180 (42%), Gaps = 29/180 (16%)

Query: 59  LLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           L  + L  S ++++G+  L   C +LQ LD   C  +++  L  L  L NL  L  R N 
Sbjct: 626 LQELSLRKSTISNAGIRSLLASCRSLQHLDMQHCHSVTE--LSALSQLPNLRELLLR-NI 682

Query: 118 AITAQGMKAFAGLINLVKLDLERC--------------------TRIHGGLVNLKGLMK- 156
            +T + M   A  +NL KL +  C                    +R       +KGL K 
Sbjct: 683 RVTGEFMTHIASCVNLRKLQMTECADITDVNCLSALQSLEDIDLSRTSVTTEGIKGLSKC 742

Query: 157 --LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
             L  LN+  C  +T+ +   L  L  L+ L +  + VTD GIA L    +L  L L  C
Sbjct: 743 YALRKLNLSECRYVTNVNC--LGKLPFLRELHLEKTNVTDKGIAGLSNCIQLETLALTKC 800


>gi|344248327|gb|EGW04431.1| Insulin-like growth factor-binding protein complex acid labile
           chain [Cricetulus griseus]
          Length = 416

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 126/282 (44%), Gaps = 1/282 (0%)

Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
           GL  L+ L +S + +          L +L  L L+   VTA    +   + +L +L+L+ 
Sbjct: 29  GLGELRELDLSRNALRSVKANVFIHLPRLQKLYLDRNFVTAVAPGAFLGMKALRWLDLSH 88

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
            +++    + F  +  L VL L  N IT       K L  LE L L    I   G     
Sbjct: 89  NRVAGLLEDTFPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEELQLGHNRIRQLGEKTFE 148

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
           GL  L+ L L+D Q+    +   SGL N+  +NLS   + +   R   GLS L SL+L+ 
Sbjct: 149 GLGQLEVLTLNDNQIHEVKMGAFSGLFNVAVMNLSGNCLRNLPERVFQGLSKLHSLHLEH 208

Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
             +    L   T L+GL  L L G  I+ +    L     L  L++    LT    +  +
Sbjct: 209 SCLGRIRLHTFTGLSGLRRLFLRGNSISITEEQSLAGLSELLELDLTANQLTHLPRRLFQ 268

Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L  L  L LS N  L+  + +++S L  +  L++S++R+ +
Sbjct: 269 GLGQLEYLLLSNN-RLSALSEDVLSPLQRVFWLDISHNRLEA 309



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 133/334 (39%), Gaps = 12/334 (3%)

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG-----LMK 156
            +GL NL  L    N     Q    F GL  L +LDL R       L ++K      L +
Sbjct: 3   FQGLGNLRELVLAGNKLAYLQP-SLFCGLGELRELDLSR-----NALRSVKANVFIHLPR 56

Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
           L+ L +   N +T        G+  L+ L +S ++V         GL  L +L L    +
Sbjct: 57  LQKLYLD-RNFVTAVAPGAFLGMKALRWLDLSHNRVAGLLEDTFPGLLGLHVLRLAHNAI 115

Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
           T+    +   L  L  L L   ++   G + F  +G L+VL L  N+I +  +    GL 
Sbjct: 116 TSLRPRTFKDLHFLEELQLGHNRIRQLGEKTFEGLGQLEVLTLNDNQIHEVKMGAFSGLF 175

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
           N+  +NL    + +       GL  L  L L  + +G   L   +GL+ L  + L    I
Sbjct: 176 NVAVMNLSGNCLRNLPERVFQGLSKLHSLHLEHSCLGRIRLHTFTGLSGLRRLFLRGNSI 235

Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
           S    + LAGLS L  L+L A Q+T         L  L +L L   R++      L   +
Sbjct: 236 SITEEQSLAGLSELLELDLTANQLTHLPRRLFQGLGQLEYLLLSNNRLSALSEDVLSPLQ 295

Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
            +  L+I    L          L  L  L+L  N
Sbjct: 296 RVFWLDISHNRLEALSEGLFSPLGRLRYLSLRNN 329



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 112/255 (43%), Gaps = 42/255 (16%)

Query: 47  KWMDVIASQGSSLLS-----------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQIS 95
           +W+D+  ++ + LL            + L+ + +T       KD   L+ L      +I 
Sbjct: 82  RWLDLSHNRVAGLLEDTFPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEELQLGHN-RIR 140

Query: 96  DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE-RCTRIHGGLVNLKGL 154
             G +   GL  L  L+   +N I    M AF+GL N+  ++L   C R     V  +GL
Sbjct: 141 QLGEKTFEGLGQLEVLTLN-DNQIHEVKMGAFSGLFNVAVMNLSGNCLRNLPERV-FQGL 198

Query: 155 MKLESLNIKWC-----------------------NCITDSDMKPLSGLTNLKSLQISCSK 191
            KL SL+++                         N I+ ++ + L+GL+ L  L ++ ++
Sbjct: 199 SKLHSLHLEHSCLGRIRLHTFTGLSGLRRLFLRGNSISITEEQSLAGLSELLELDLTANQ 258

Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL--NRCQLSDDGCEKFS 249
           +T       +GL +L  L L    ++A   D LS L  +F+L++  NR +   +G   FS
Sbjct: 259 LTHLPRRLFQGLGQLEYLLLSNNRLSALSEDVLSPLQRVFWLDISHNRLEALSEGL--FS 316

Query: 250 KIGSLKVLNLGFNEI 264
            +G L+ L+L  N +
Sbjct: 317 PLGRLRYLSLRNNSL 331


>gi|388455805|ref|ZP_10138100.1| hypothetical protein FdumT_04498 [Fluoribacter dumoffii Tex-KL]
          Length = 398

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 103/200 (51%)

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
           LKSL +  + + + GI +L+    +  ++LE   +    + ++    +LFYLNL++  + 
Sbjct: 194 LKSLYLGNNHLGNEGIKFLENNHSINFIDLENNNIDQDGIPTIVRKPNLFYLNLDKNPIH 253

Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
           + G    ++   ++ L++    +  E    L  L +L  LN+D   IGDEG++ L  + +
Sbjct: 254 NAGAALLAQASMVRWLSIADCRVGIEGAQALAALHHLAMLNIDKNFIGDEGIIALAKMRS 313

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
           L  L  ++  +G  G ++L+    L++++L+   I D     LA  ++L +L++   QI+
Sbjct: 314 LNNLYANNNSIGDEGAKNLANAIQLQNLSLNHNQIGDEGALALAETATLYALDVGYNQIS 373

Query: 362 DTGLAALTSLTGLTHLDLFG 381
             G+ AL +   L +L+  G
Sbjct: 374 VIGVNALKNNEALAYLNTQG 393



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 119/264 (45%), Gaps = 6/264 (2%)

Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
            I   G E L   S L  LS   +N I A G K  A    L+ L L R ++I  G    +
Sbjct: 131 HIGPYGAEALAKNSTLFFLSLD-SNPIGASGAKELAKNKTLIHLSL-RKSQI--GAAGAR 186

Query: 153 GLMKLESLNIKWC--NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
            L   E+L   +   N + +  +K L    ++  + +  + +   GI  +     L  LN
Sbjct: 187 ALFANETLKSLYLGNNHLGNEGIKFLENNHSINFIDLENNNIDQDGIPTIVRKPNLFYLN 246

Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
           L+  P+  A    L+    + +L++  C++  +G +  + +  L +LN+  N I DE ++
Sbjct: 247 LDKNPIHNAGAALLAQASMVRWLSIADCRVGIEGAQALAALHHLAMLNIDKNFIGDEGII 306

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
            L  + +L +L  ++  IGDEG  NL     L+ L L+  Q+G  G   L+    L +++
Sbjct: 307 ALAKMRSLNNLYANNNSIGDEGAKNLANAIQLQNLSLNHNQIGDEGALALAETATLYALD 366

Query: 331 LSFTGISDGSLRKLAGLSSLKSLN 354
           + +  IS   +  L    +L  LN
Sbjct: 367 VGYNQISVIGVNALKNNEALAYLN 390



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 116/265 (43%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N I     + L+  + L  L +  + +  SG   L   + L  L+L    + AA   +L 
Sbjct: 130 NHIGPYGAEALAKNSTLFFLSLDSNPIGASGAKELAKNKTLIHLSLRKSQIGAAGARALF 189

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
           A  +L  L L    L ++G +      S+  ++L  N I  + +  +    NL  LNLD 
Sbjct: 190 ANETLKSLYLGNNHLGNEGIKFLENNHSINFIDLENNNIDQDGIPTIVRKPNLFYLNLDK 249

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
             I + G   L     ++ L ++D +VG  G + L+ L +L  +N+    I D  +  LA
Sbjct: 250 NPIHNAGAALLAQASMVRWLSIADCRVGIEGAQALAALHHLAMLNIDKNFIGDEGIIALA 309

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
            + SL +L  +   I D G   L +   L +L L   +I D GA  L     L +L++  
Sbjct: 310 KMRSLNNLYANNNSIGDEGAKNLANAIQLQNLSLNHNQIGDEGALALAETATLYALDVGY 369

Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQN 430
             ++  GV  +K+  +L  LN   N
Sbjct: 370 NQISVIGVNALKNNEALAYLNTQGN 394



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 124/272 (45%), Gaps = 1/272 (0%)

Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
           +AYL    ++T L+L    +     + L++   + YL L   ++   G E  S+  SL  
Sbjct: 65  VAYLDKHPEITRLSLSDNQIGYQGAELLASNTHIRYLFLTGNRIGSLGAEALSQNTSLIY 124

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
           L LG N I       L   + L  L+LDS  IG  G   L     L  L L  +Q+G++G
Sbjct: 125 LLLGENHIGPYGAEALAKNSTLFFLSLDSNPIGASGAKELAKNKTLIHLSLRKSQIGAAG 184

Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
            R L     L+S+ L    + +  ++ L    S+  ++L+   I   G+  +     L +
Sbjct: 185 ARALFANETLKSLYLGNNHLGNEGIKFLENNHSINFIDLENNNIDQDGIPTIVRKPNLFY 244

Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
           L+L    I ++GAA L     +R L I    +   G + +  L  L +LN+ +N  + D+
Sbjct: 245 LNLDKNPIHNAGAALLAQASMVRWLSIADCRVGIEGAQALAALHHLAMLNIDKNF-IGDE 303

Query: 437 TLELISGLTGLVSLNVSNSRITSAGLRHLNHA 468
            +  ++ +  L +L  +N+ I   G ++L +A
Sbjct: 304 GIIALAKMRSLNNLYANNNSIGDEGAKNLANA 335



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 117/277 (42%), Gaps = 1/277 (0%)

Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
           L +S +++   G   L     +  L L G  + +   ++LS   SL YL L    +   G
Sbjct: 77  LSLSDNQIGYQGAELLASNTHIRYLFLTGNRIGSLGAEALSQNTSLIYLLLGENHIGPYG 136

Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
            E  +K  +L  L+L  N I       L     L  L+L    IG  G   L     LK 
Sbjct: 137 AEALAKNSTLFFLSLDSNPIGASGAKELAKNKTLIHLSLRKSQIGAAGARALFANETLKS 196

Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
           L L +  +G+ G++ L    ++  I+L    I    +  +    +L  LNLD   I + G
Sbjct: 197 LYLGNNHLGNEGIKFLENNHSINFIDLENNNIDQDGIPTIVRKPNLFYLNLDKNPIHNAG 256

Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
            A L   + +  L +   R+   GA  L    +L  L I    + D G+  +  + SL  
Sbjct: 257 AALLAQASMVRWLSIADCRVGIEGAQALAALHHLAMLNIDKNFIGDEGIIALAKMRSLNN 316

Query: 425 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
           L  + N ++ D+  + ++    L +L++++++I   G
Sbjct: 317 L-YANNNSIGDEGAKNLANAIQLQNLSLNHNQIGDEG 352


>gi|356495085|ref|XP_003516411.1| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max]
          Length = 671

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 130/446 (29%), Positives = 202/446 (45%), Gaps = 79/446 (17%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDS------GLIHLKD------- 79
           L+ +CL    G+ D  +D++A +   L ++DLS   +T+        L HL+D       
Sbjct: 183 LRVICLKWCVGIGDLGVDLVAIKCKELTTLDLSYLPITEKCLPSIFKLQHLEDLVLEGCF 242

Query: 80  ---------------CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
                          C  L+ LD + C  IS     H+ GLS LTS+S      I+A G 
Sbjct: 243 GIDDDSLDVDLLKQGCKTLKKLDISGCQNIS-----HV-GLSKLTSISGGLEKLISADGS 296

Query: 125 KAFAGLIN-LVKLDLERCTRIHGGLVNLKGL-------MKLESLNIKWCNCITDSDMKPL 176
                L + L KL + +   + G  V  +GL       + L  L++  C  +TD  +  L
Sbjct: 297 PVTLSLADGLNKLSMLQSIVLDGCPVTSEGLRAIGNLCISLRELSLSKCLGVTDEALSFL 356

Query: 177 -SGLTNLKSLQISC-SKVTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
            S   +L+ L I+C  K+TD  IA +      LT L +E C +  +           F L
Sbjct: 357 VSKHKDLRKLDITCCRKITDVSIASISNSCAGLTSLKMESCTLVPS---------EAFVL 407

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEG 292
              +C   ++             L+L  NEI DE L+ +   + L SL +  C  I D G
Sbjct: 408 IGEKCHYIEE-------------LDLTDNEIDDEGLMSISSCSRLSSLKIGICLNITDRG 454

Query: 293 LVNLTGLCN-LKCLEL-SDTQVGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLS 348
           L  +   C+ LK L+L   T V   G+  ++ G   LE IN S+ T I+D +L  L+  S
Sbjct: 455 LTYVGMHCSKLKELDLYRSTGVDDLGISAIARGCPGLEMINTSYCTSITDRALITLSKCS 514

Query: 349 SLKSLNLDA-RQITDTGLAALT-SLTGLTHLDLFGAR-ITDSGAAYLRNF-KNLRSLEIC 404
           +LK+L +     +T  GLAA+  +   L+ LD+     I DSG   L +F +NLR + + 
Sbjct: 515 NLKTLEIRGCLLVTSIGLAAIAMNCRQLSRLDIKKCYNIDDSGMIALAHFSQNLRQINLS 574

Query: 405 GGGLTDAGVKHIKDLS---SLTLLNL 427
              +TD G+  + ++S   S T+L+L
Sbjct: 575 YSSVTDVGLLSLANISCLQSFTVLHL 600



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 111/429 (25%), Positives = 176/429 (41%), Gaps = 57/429 (13%)

Query: 27  AFRDCALQDLCLGQYPGVNDKWMDVIA-SQGSSLLSVDLSGSD-VTDSGLIHL-KDCSNL 83
           A R  ++ +L L   P V D  + ++A +  ++L  +DLS S   T SGL+ L   C  L
Sbjct: 73  AARYPSVTELDLSLCPRVGDDALALVAGAYAATLRRLDLSQSRRFTGSGLMSLGARCEYL 132

Query: 84  QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
             LD +   ++ D G+  +    NL  L   R   +T  G+   A               
Sbjct: 133 VELDLSNATELRDAGVAAVARARNLRRLWLARCKNVTDMGIGCIA--------------- 177

Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYLKG 202
                    G  KL  + +KWC  I D  +  ++     L +L +S   +T+  +  +  
Sbjct: 178 --------VGCRKLRVICLKWCVGIGDLGVDLVAIKCKELTTLDLSYLPITEKCLPSIFK 229

Query: 203 LQKLTLLNLEGC----PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI--GSLK 255
           LQ L  L LEGC      +           +L  L+++ CQ +S  G  K + I  G  K
Sbjct: 230 LQHLEDLVLEGCFGIDDDSLDVDLLKQGCKTLKKLDISGCQNISHVGLSKLTSISGGLEK 289

Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
           +++   + +T      L  L+ L+S+ LD C +  EGL  +  LC +   ELS       
Sbjct: 290 LISADGSPVTLSLADGLNKLSMLQSIVLDGCPVTSEGLRAIGNLC-ISLRELS------- 341

Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT-SLTGL 374
               LS    +    LSF       LRKL             R+ITD  +A+++ S  GL
Sbjct: 342 ----LSKCLGVTDEALSFLVSKHKDLRKLDITC--------CRKITDVSIASISNSCAGL 389

Query: 375 THLDLFGARITDSGAAYLRNFK--NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
           T L +    +  S A  L   K   +  L++    + D G+  I   S L+ L +    N
Sbjct: 390 TSLKMESCTLVPSEAFVLIGEKCHYIEELDLTDNEIDDEGLMSISSCSRLSSLKIGICLN 449

Query: 433 LTDKTLELI 441
           +TD+ L  +
Sbjct: 450 ITDRGLTYV 458



 Score = 46.2 bits (108), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 118/274 (43%), Gaps = 56/274 (20%)

Query: 18  RCLTEVSLEAFRD-CA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLI 75
           R +T+VS+ +  + CA L  L +     V  +   +I  +   +  +DL+ +++ D GL+
Sbjct: 372 RKITDVSIASISNSCAGLTSLKMESCTLVPSEAFVLIGEKCHYIEELDLTDNEIDDEGLM 431

Query: 76  HLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
            +  CS L SL    C+ I+D GL ++    S L  L   R+  +   G+ A A      
Sbjct: 432 SISSCSRLSSLKIGICLNITDRGLTYVGMHCSKLKELDLYRSTGVDDLGISAIA------ 485

Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVT 193
                            +G   LE +N  +C  ITD  +  LS  +NLK+L+I  C  VT
Sbjct: 486 -----------------RGCPGLEMINTSYCTSITDRALITLSKCSNLKTLEIRGCLLVT 528

Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD----GCEKFS 249
             G+A +        +N                   L  L++ +C   DD        FS
Sbjct: 529 SIGLAAIA-------MNCR----------------QLSRLDIKKCYNIDDSGMIALAHFS 565

Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           +  +L+ +NL ++ +TD  L+ L  ++ L+S  +
Sbjct: 566 Q--NLRQINLSYSSVTDVGLLSLANISCLQSFTV 597


>gi|401420706|ref|XP_003874842.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
 gi|322491078|emb|CBZ26343.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 1207

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 138/291 (47%), Gaps = 42/291 (14%)

Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
           SG+  L  L++L  L++   P+    L +L+   SL  + L+RC+      E   ++  L
Sbjct: 421 SGVRSLGSLKQLRCLHILHTPLHETFLQALNTCSSLECIILHRCR-GVRSLEPLRRLEHL 479

Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK-CLELSDTQVG 313
           + L+L    +TD  L+ L G T+L  L LD C      + +L+ L NL+  LE       
Sbjct: 480 QSLSLHGLSVTDTDLLSLAGCTHLRQLVLDEC----RQITDLSFLANLRGTLE------- 528

Query: 314 SSGLRHLSGLTNLESINLSFTGISDG-------SLRKLA------GLSSLKSLNLDARQI 360
               R L   T L ++N+   G+ D        SLR+L        L++L+ LNL    +
Sbjct: 529 ----RLLMPRTLLSNVNMQHIGLCDKLVELHLQSLRQLTDIGMLKDLTALRVLNLSDNLV 584

Query: 361 TDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYL---RNFKNLRSLEICGGGLTDAGVKHI 416
           TD G +AL  L  L  L+L   R IT   AA+    R    L SL++    +TD GV+ +
Sbjct: 585 TDEGCSALHCLPSLQRLNLASCRCITSLAAAFTASGRWMHRLLSLDLSHTNITDVGVQFV 644

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS---LNVSNSRITSAGLRH 464
           ++ + L  LNL   C    + L L+  L  ++S   LN+  +R+T+   +H
Sbjct: 645 QECTDLRYLNL-YGC----RELRLLPWLQKMISLRWLNLGGTRVTNEETKH 690



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 143/312 (45%), Gaps = 51/312 (16%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           L S+ L G  VTD+ L+ L  C++L+ L  + C QI+D              LSF  N  
Sbjct: 479 LQSLSLHGLSVTDTDLLSLAGCTHLRQLVLDECRQITD--------------LSFLANLR 524

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
            T + +     L++ V +        H GL +     KL  L+++    +TD  M  L  
Sbjct: 525 GTLERLLMPRTLLSNVNMQ-------HIGLCD-----KLVELHLQSLRQLTDIGM--LKD 570

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA--------LGSL 230
           LT L+ L +S + VTD G + L  L  L  LNL  C     C+ SL+A        +  L
Sbjct: 571 LTALRVLNLSDNLVTDEGCSALHCLPSLQRLNLASC----RCITSLAAAFTASGRWMHRL 626

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIG 289
             L+L+   ++D G +   +   L+ LNL G  E+    L  L+ + +L  LNL    + 
Sbjct: 627 LSLDLSHTNITDVGVQFVQECTDLRYLNLYGCREL--RLLPWLQKMISLRWLNLGGTRVT 684

Query: 290 DEGLVN-LTGLCNLKCLELSDTQVGSSGLRHLS---GLTNLESINLSFTGISDGSLRKLA 345
           +E   + L    NL+ L LS    G S +R LS    L +LE +NL  T ++D  L  L 
Sbjct: 685 NEETKHYLPCARNLRFLSLS----GCSSVRLLSFAVKLHHLEYLNLESTSVADSELSCLC 740

Query: 346 GLSSLKSLNLDA 357
               L+ L+L++
Sbjct: 741 HCRKLRYLSLES 752



 Score = 46.6 bits (109), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 133/300 (44%), Gaps = 29/300 (9%)

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL-GSLF 231
           ++PL  L +L+SL +    VTD+ +  L G   L  L L+ C      L  L+ L G+L 
Sbjct: 470 LEPLRRLEHLQSLSLHGLSVTDTDLLSLAGCTHLRQLVLDECRQITD-LSFLANLRGTLE 528

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
            L + R  LS+   +       L  L+L    ++TD  +  LK LT L  LNL    + D
Sbjct: 529 RLLMPRTLLSNVNMQHIGLCDKLVELHLQSLRQLTD--IGMLKDLTALRVLNLSDNLVTD 586

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
           EG   L  L +L+ L L+  +              + S+  +FT       R       L
Sbjct: 587 EGCSALHCLPSLQRLNLASCRC-------------ITSLAAAFTASGRWMHR-------L 626

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
            SL+L    ITD G+  +   T L +L+L+G R       +L+   +LR L + G  +T+
Sbjct: 627 LSLDLSHTNITDVGVQFVQECTDLRYLNLYGCRELRL-LPWLQKMISLRWLNLGGTRVTN 685

Query: 411 AGVKHIKDLS-SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
              KH    + +L  L+LS  C+ + + L     L  L  LN+ ++ +  + L  L H R
Sbjct: 686 EETKHYLPCARNLRFLSLS-GCS-SVRLLSFAVKLHHLEYLNLESTSVADSELSCLCHCR 743


>gi|290892592|ref|ZP_06555585.1| InlE protein [Listeria monocytogenes FSL J2-071]
 gi|404406718|ref|YP_006689433.1| internalin E [Listeria monocytogenes SLCC2376]
 gi|290557901|gb|EFD91422.1| InlE protein [Listeria monocytogenes FSL J2-071]
 gi|404240867|emb|CBY62267.1| internalin E (LPXTG motif) [Listeria monocytogenes SLCC2376]
          Length = 499

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 107/213 (50%), Gaps = 38/213 (17%)

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           LTNL  L+++ +++TD  ++ L  L K+T L L G P     L  +SA+  L        
Sbjct: 95  LTNLSELELTDNQITD--VSPLANLTKITELGLSGNP-----LKDVSAIAGL-------- 139

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
                         SLK+L+L + +ITD  +  L GLTNL+ LNLD   I D  +  L  
Sbjct: 140 -------------KSLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAA 182

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
           L NL+ L L  TQV  S L  L+ L+ L  +N   + +SD  +  LA LSSL  + L   
Sbjct: 183 LTNLQTLSLGYTQV--SDLTPLANLSKLTILNAENSKVSD--ISPLASLSSLAEVYLREN 238

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
           QI+D  ++ L ++  L+ ++L    IT+    Y
Sbjct: 239 QISD--VSPLANIPNLSIIELTDQIITNQPVYY 269



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 24/161 (14%)

Query: 274 GLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLT 324
           G+T +E +    NL    + D  + +++ L NL  +    T++G SG     +  ++GL 
Sbjct: 85  GITTIEGMQYLTNLSELELTDNQITDVSPLANLTKI----TELGLSGNPLKDVSAIAGLK 140

Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
           +L+ ++L +T I+D  +  LAGL++L+ LNLD  QITD  ++ L +LT L  L L   ++
Sbjct: 141 SLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAALTNLQTLSLGYTQV 196

Query: 385 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
           +D     L    NL  L I      ++ V  I  L+SL+ L
Sbjct: 197 SD-----LTPLANLSKLTILNAE--NSKVSDISPLASLSSL 230



 Score = 44.7 bits (104), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 115/262 (43%), Gaps = 46/262 (17%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
           +Q   + Q   +N+ + D + +     L   L  +DVTD           +   D +   
Sbjct: 31  VQAAVIEQPTPINEIFTDPVVADNVKTL---LEKADVTDE----------VTQTDLDSIT 77

Query: 93  QIS--DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL-DLERCTRIHGGLV 149
           Q+S    G+  + G+  LT+LS      +T   +   + L NL K+ +L         + 
Sbjct: 78  QLSAKSAGITTIEGMQYLTNLSELE---LTDNQITDVSPLANLTKITELGLSGNPLKDVS 134

Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQ---- 204
            + GL  L+ L++ + +    +D+  L+GLTNL+ L +  +++TD S +A L  LQ    
Sbjct: 135 AIAGLKSLKMLHLIYTDI---TDVTSLAGLTNLQELNLDINQITDISPLAALTNLQTLSL 191

Query: 205 ---------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
                          KLT+LN E   V  + +  L++L SL  + L   Q+SD      +
Sbjct: 192 GYTQVSDLTPLANLSKLTILNAENSKV--SDISPLASLSSLAEVYLRENQISD--VSPLA 247

Query: 250 KIGSLKVLNLGFNEITDECLVH 271
            I +L ++ L    IT++ + +
Sbjct: 248 NIPNLSIIELTDQIITNQPVYY 269



 Score = 38.1 bits (87), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 98/211 (46%), Gaps = 41/211 (19%)

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
             NEI  + +V      N+++L L+   + DE  V  T L ++   +LS    G + +  
Sbjct: 41  PINEIFTDPVVA----DNVKTL-LEKADVTDE--VTQTDLDSIT--QLSAKSAGITTIEG 91

Query: 320 LSGLTNLESINLSFTGISDGS--------------------LRKLAGLSSLKSLNLDARQ 359
           +  LTNL  + L+   I+D S                    +  +AGL SLK L+L    
Sbjct: 92  MQYLTNLSELELTDNQITDVSPLANLTKITELGLSGNPLKDVSAIAGLKSLKMLHLIYTD 151

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
           ITD  + +L  LT L  L+L   +ITD     L    NL++L +    ++D  +  + +L
Sbjct: 152 ITD--VTSLAGLTNLQELNLDINQITDISP--LAALTNLQTLSLGYTQVSD--LTPLANL 205

Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
           S LT+LN ++N  ++D     IS L  L SL
Sbjct: 206 SKLTILN-AENSKVSD-----ISPLASLSSL 230


>gi|85679295|gb|ABC72063.1| InlE [Listeria monocytogenes]
          Length = 498

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 107/213 (50%), Gaps = 38/213 (17%)

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           LTNL  L+++ +++TD  ++ L  L K+T L L G P     L  +SA+  L        
Sbjct: 94  LTNLSELELTDNQITD--VSPLANLTKITELGLSGNP-----LKDVSAIAGL-------- 138

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
                         SLK+L+L + +ITD  +  L GLTNL+ LNLD   I D  +  L  
Sbjct: 139 -------------KSLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAA 181

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
           L NL+ L L  TQV  S L  L+ L+ L  +N   + +SD  +  LA LSSL  + L   
Sbjct: 182 LTNLQTLSLGYTQV--SDLTPLANLSKLTILNAENSKVSD--ISPLASLSSLAEVYLREN 237

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
           QI+D  ++ L ++  L+ ++L    IT+    Y
Sbjct: 238 QISD--VSPLANIPNLSIIELTDQIITNQPVYY 268



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 24/161 (14%)

Query: 274 GLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLT 324
           G+T +E +    NL    + D  + +++ L NL  +    T++G SG     +  ++GL 
Sbjct: 84  GITTIEGMQYLTNLSELELTDNQITDVSPLANLTKI----TELGLSGNPLKDVSAIAGLK 139

Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
           +L+ ++L +T I+D  +  LAGL++L+ LNLD  QITD  ++ L +LT L  L L   ++
Sbjct: 140 SLKMLHLIYTDITD--VTSLAGLTNLQELNLDINQITD--ISPLAALTNLQTLSLGYTQV 195

Query: 385 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
           +D     L    NL  L I      ++ V  I  L+SL+ L
Sbjct: 196 SD-----LTPLANLSKLTILNAE--NSKVSDISPLASLSSL 229



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 115/262 (43%), Gaps = 46/262 (17%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
           +Q   + Q   +N+ + D + +     L   L  +DVTD           +   D +   
Sbjct: 30  VQAAVIEQPTPINEIFTDPVVADNVKTL---LEKADVTDE----------VTQTDLDSIT 76

Query: 93  QIS--DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL-DLERCTRIHGGLV 149
           Q+S    G+  + G+  LT+LS      +T   +   + L NL K+ +L         + 
Sbjct: 77  QLSAKSAGITTIEGMQYLTNLSELE---LTDNQITDVSPLANLTKITELGLSGNPLKDVS 133

Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQ---- 204
            + GL  L+ L++ + +    +D+  L+GLTNL+ L +  +++TD S +A L  LQ    
Sbjct: 134 AIAGLKSLKMLHLIYTDI---TDVTSLAGLTNLQELNLDINQITDISPLAALTNLQTLSL 190

Query: 205 ---------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
                          KLT+LN E   V  + +  L++L SL  + L   Q+SD      +
Sbjct: 191 GYTQVSDLTPLANLSKLTILNAENSKV--SDISPLASLSSLAEVYLRENQISD--VSPLA 246

Query: 250 KIGSLKVLNLGFNEITDECLVH 271
            I +L ++ L    IT++ + +
Sbjct: 247 NIPNLSIIELTDQIITNQPVYY 268



 Score = 38.1 bits (87), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 98/210 (46%), Gaps = 41/210 (19%)

Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
            NEI  + +V      N+++L L+   + DE  V  T L ++   +LS    G + +  +
Sbjct: 41  INEIFTDPVVA----DNVKTL-LEKADVTDE--VTQTDLDSIT--QLSAKSAGITTIEGM 91

Query: 321 SGLTNLESINLSFTGISDGS--------------------LRKLAGLSSLKSLNLDARQI 360
             LTNL  + L+   I+D S                    +  +AGL SLK L+L    I
Sbjct: 92  QYLTNLSELELTDNQITDVSPLANLTKITELGLSGNPLKDVSAIAGLKSLKMLHLIYTDI 151

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD  + +L  LT L  L+L   +ITD     L    NL++L +    ++D  +  + +LS
Sbjct: 152 TD--VTSLAGLTNLQELNLDINQITDISP--LAALTNLQTLSLGYTQVSD--LTPLANLS 205

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
            LT+LN ++N  ++D     IS L  L SL
Sbjct: 206 KLTILN-AENSKVSD-----ISPLASLSSL 229


>gi|328870633|gb|EGG19006.1| Histidine kinase A [Dictyostelium fasciculatum]
          Length = 1765

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 106/416 (25%), Positives = 183/416 (43%), Gaps = 65/416 (15%)

Query: 44   VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEH 101
            ++D     +  Q   L  +D SG        +H    +C  L+ L  N C  ++   ++ 
Sbjct: 1375 ISDHSAVALIQQSPKLAIIDFSGCHQIGDATVHAIANNCLLLKELSMNKCRNVTSSAIDK 1434

Query: 102  L-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
            L R L ++  +S  ++ A  +          N ++L  + C               L+  
Sbjct: 1435 LFRNLHDIRLISLAQSIASASD---------NTLRLIGKYCP-------------DLQYA 1472

Query: 161  NIKWCNCITDSDMKPLSGLTN-LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVT 217
            N      I+D  +  ++  TN L  L IS CS ++D GIAY+ +   KL +  +      
Sbjct: 1473 NFTHNPIISDQGITAMTKFTNSLLELDISYCSSISDVGIAYIAQHCSKLRIFRM------ 1526

Query: 218  AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
             A L+++++L  +        +L   GC K S        +LG       C+   KG T 
Sbjct: 1527 -ANLNNVTSLKPIGRGCQELVELDISGCHKISS-------DLG-------CIT--KGCTK 1569

Query: 278  LESLNLDSC-GIGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHLSGLTN----LESINL 331
            L +  L  C G+ D  +++  G + ++  L   D   G+   + +  +T+    L S+N+
Sbjct: 1570 LTNFRLRRCYGLQDVTMLSEDGEIHSMPKLTQLDWSYGNIEFQTIHSITHSCKQLTSLNI 1629

Query: 332  SF-TGISDGSLRKLAG-LSSLKSLNLDAR-QITDTGLAALTS---LTGLTHLDLFGAR-I 384
            +F   ++D S+ ++A  L+SLK L +DA   ITD G+ AL+     + L  L L G R I
Sbjct: 1630 AFCKNLTDTSIERIASSLTSLKKLKIDAVVNITDEGIKALSEGAIYSTLEVLSLVGCRKI 1689

Query: 385  TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS-SLTLLNLSQNCNLTDKTLE 439
            +D  A ++  F+NLR + I G  +T AG   I   S  L  +++ Q  N+    L+
Sbjct: 1690 SDVSAHHILRFQNLRKISIGGCLMTTAGANLIASESFELVKIHVRQCLNINPVQLQ 1745


>gi|290997085|ref|XP_002681112.1| predicted protein [Naegleria gruberi]
 gi|284094735|gb|EFC48368.1| predicted protein [Naegleria gruberi]
          Length = 142

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/129 (29%), Positives = 72/129 (55%)

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
           L  L + + ++G  G +++S +  L S+++ +  I D  ++ ++ +  L SLN+   +I 
Sbjct: 4   LSSLNVYNNEIGCEGAKYISEMQQLTSVDIYYNEIGDEGVKYISEMKQLSSLNVYNNEIG 63

Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
           D G+  ++ +  LT L++   RI+  G  Y+   K L SL+I    + D GVK+I ++  
Sbjct: 64  DEGVKYISEMKQLTSLNIPDNRISVEGVKYISEMKQLTSLDISYNEIGDEGVKYISEMKQ 123

Query: 422 LTLLNLSQN 430
           L+ LN+S N
Sbjct: 124 LSSLNISYN 132



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 76/134 (56%)

Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
           +  L  LN+   ++  +G +  S++  L  +++ +NEI DE + ++  +  L SLN+ + 
Sbjct: 1   MKQLSSLNVYNNEIGCEGAKYISEMQQLTSVDIYYNEIGDEGVKYISEMKQLSSLNVYNN 60

Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
            IGDEG+  ++ +  L  L + D ++   G++++S +  L S+++S+  I D  ++ ++ 
Sbjct: 61  EIGDEGVKYISEMKQLTSLNIPDNRISVEGVKYISEMKQLTSLDISYNEIGDEGVKYISE 120

Query: 347 LSSLKSLNLDARQI 360
           +  L SLN+   +I
Sbjct: 121 MKQLSSLNISYNEI 134



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 68/129 (52%)

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           +  L SLN+ +  IG EG   ++ +  L  +++   ++G  G++++S +  L S+N+   
Sbjct: 1   MKQLSSLNVYNNEIGCEGAKYISEMQQLTSVDIYYNEIGDEGVKYISEMKQLSSLNVYNN 60

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            I D  ++ ++ +  L SLN+   +I+  G+  ++ +  LT LD+    I D G  Y+  
Sbjct: 61  EIGDEGVKYISEMKQLTSLNIPDNRISVEGVKYISEMKQLTSLDISYNEIGDEGVKYISE 120

Query: 395 FKNLRSLEI 403
            K L SL I
Sbjct: 121 MKQLSSLNI 129



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
           +  L S+N+    I     + ++ +  L S+++   +I D G+  ++ +  L+ L+++  
Sbjct: 1   MKQLSSLNVYNNEIGCEGAKYISEMQQLTSVDIYYNEIGDEGVKYISEMKQLSSLNVYNN 60

Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
            I D G  Y+   K L SL I    ++  GVK+I ++  LT L++S N  + D+ ++ IS
Sbjct: 61  EIGDEGVKYISEMKQLTSLNIPDNRISVEGVKYISEMKQLTSLDISYN-EIGDEGVKYIS 119

Query: 443 GLTGLVSLNVSNSRI 457
            +  L SLN+S + I
Sbjct: 120 EMKQLSSLNISYNEI 134



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 73/134 (54%)

Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
           +++L+ LN+    +       +S +  L  +++   ++ D+G +  S++  L  LN+  N
Sbjct: 1   MKQLSSLNVYNNEIGCEGAKYISEMQQLTSVDIYYNEIGDEGVKYISEMKQLSSLNVYNN 60

Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
           EI DE + ++  +  L SLN+    I  EG+  ++ +  L  L++S  ++G  G++++S 
Sbjct: 61  EIGDEGVKYISEMKQLTSLNIPDNRISVEGVKYISEMKQLTSLDISYNEIGDEGVKYISE 120

Query: 323 LTNLESINLSFTGI 336
           +  L S+N+S+  I
Sbjct: 121 MKQLSSLNISYNEI 134



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 69/126 (54%)

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
           L  LN+  NEI  E   ++  +  L S+++    IGDEG+  ++ +  L  L + + ++G
Sbjct: 4   LSSLNVYNNEIGCEGAKYISEMQQLTSVDIYYNEIGDEGVKYISEMKQLSSLNVYNNEIG 63

Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
             G++++S +  L S+N+    IS   ++ ++ +  L SL++   +I D G+  ++ +  
Sbjct: 64  DEGVKYISEMKQLTSLNIPDNRISVEGVKYISEMKQLTSLDISYNEIGDEGVKYISEMKQ 123

Query: 374 LTHLDL 379
           L+ L++
Sbjct: 124 LSSLNI 129



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 71/130 (54%), Gaps = 1/130 (0%)

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
           + +L SLN+ + N I     K +S +  L S+ I  +++ D G+ Y+  +++L+ LN+  
Sbjct: 1   MKQLSSLNV-YNNEIGCEGAKYISEMQQLTSVDIYYNEIGDEGVKYISEMKQLSSLNVYN 59

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
             +    +  +S +  L  LN+   ++S +G +  S++  L  L++ +NEI DE + ++ 
Sbjct: 60  NEIGDEGVKYISEMKQLTSLNIPDNRISVEGVKYISEMKQLTSLDISYNEIGDEGVKYIS 119

Query: 274 GLTNLESLNL 283
            +  L SLN+
Sbjct: 120 EMKQLSSLNI 129



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 64/111 (57%), Gaps = 1/111 (0%)

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
           + +L S++I + N I D  +K +S +  L SL +  +++ D G+ Y+  +++LT LN+  
Sbjct: 25  MQQLTSVDIYY-NEIGDEGVKYISEMKQLSSLNVYNNEIGDEGVKYISEMKQLTSLNIPD 83

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
             ++   +  +S +  L  L+++  ++ D+G +  S++  L  LN+ +NEI
Sbjct: 84  NRISVEGVKYISEMKQLTSLDISYNEIGDEGVKYISEMKQLSSLNISYNEI 134



 Score = 43.1 bits (100), Expect = 0.31,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 2/111 (1%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+   L SVD+  +++ D G+ ++ +   L SL+  +  +I D G++++  +  LTSL+ 
Sbjct: 23  SEMQQLTSVDIYYNEIGDEGVKYISEMKQLSSLNV-YNNEIGDEGVKYISEMKQLTSLNI 81

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
             +N I+ +G+K  + +  L  LD+        G+  +  + +L SLNI +
Sbjct: 82  -PDNRISVEGVKYISEMKQLTSLDISYNEIGDEGVKYISEMKQLSSLNISY 131


>gi|407410013|gb|EKF32614.1| hypothetical protein MOQ_003536 [Trypanosoma cruzi marinkellei]
          Length = 835

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 108/423 (25%), Positives = 184/423 (43%), Gaps = 76/423 (17%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC----IQISDGGLEHLRGLSNLTSLS 112
           S L S+ L  + +++  +++L +C +L+ +  N C           L+ L+ LS L    
Sbjct: 193 SKLRSLTLCNTPLSEVMMLYLSECVSLERVVMNSCRGLSSLECLSSLQRLKELSLL---- 248

Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
              N  IT +G+   +   +L  + L+ C             MKL+S+N           
Sbjct: 249 ---NMGITEEGLAFISSCNSLQHIQLDNC-------------MKLQSINC---------- 282

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
              L  L  L++L +S ++V+D GI  L  L+ L  L L      ++ ++ +  L  L  
Sbjct: 283 ---LGSLLGLRTLSVSRNRVSDVGIQSLSNLKNLEQLRLVSFNRLSS-VEPVVCLDKLLE 338

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           L+L   +++D+GC   +  G ++ L L       + +  +  LT+L  L+L    +    
Sbjct: 339 LDLTENRVTDEGCAALANCGQIQKLTLASCRCVSD-VRWICALTSLRFLDLSKTHVRSAD 397

Query: 293 LVNLTGLCNLKCLELSDTQVGS-SGLRHLS---GLTNLESINLSFTGISDGSLRKLAGLS 348
           L  LT      C  L +  V S SG++ +S   GL +L+ ++L+ T I D   + L   +
Sbjct: 398 LQLLT-----VCQRLEELHVASCSGVKDVSFVEGLLSLKHLDLTDTSIKDAGTQSLRKCT 452

Query: 349 SLKSLNL-DARQITDTGL-------------------AALTSLTGLTHLDLFGAR----I 384
           +L  L+L D R +TD                      A +  L   T L+L   R    +
Sbjct: 453 ALTFLSLQDCRFLTDIHFVEPLNNLLSLNLEGTEVVDANIIPLMHCTKLELLSLRHCLFL 512

Query: 385 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
           TD     LR  K L+SL++ G  +TD G+  +    SL  ++LS+ C +T    E +  L
Sbjct: 513 TD--VRCLRELKALKSLDLSGTYVTDEGISDVSQCISLERIDLSECCLITH--FEFLRPL 568

Query: 445 TGL 447
           T L
Sbjct: 569 TAL 571



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 117/276 (42%), Gaps = 54/276 (19%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           +L S+DLSG+ VTD G+  +  C +L+ +D + C  I+    E LR L+ L  +   R N
Sbjct: 523 ALKSLDLSGTYVTDEGISDVSQCISLERIDLSECCLITH--FEFLRPLTALKHVIADRMN 580

Query: 118 AITAQGM--------------KAFAGLI-----NLVKLDLERCTR----IHGGLVNLKGL 154
            +   G+              K    +       L+ L L++ T     IHG L+    L
Sbjct: 581 VLDVTGLGGSGSVEGVSLADCKRLGSMCLLEAPRLLDLSLKKSTITDSGIHGVLLRCHSL 640

Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
            +   LN++  NC + +++  ++ L +L  L +   K+ +  +A++     L  L +  C
Sbjct: 641 RR---LNLQ--NCTSITELSAVAQLPSLTELFVRNMKIKNKSVAFVARCATLEKLQMVEC 695

Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL--------------- 259
            V    ++SL  L  L  L+L+R  ++  G    +   +LK LNL               
Sbjct: 696 -VDITDVNSLKYLHRLVELDLSRTSVTSGGIVGLASCYNLKKLNLSGCRYLTEVNCLGEL 754

Query: 260 --------GFNEITDECLVHLKGLTNLESLNLDSCG 287
                   G   +TD  +V L     LE+L L +C 
Sbjct: 755 RLLRELHLGRTTVTDSGIVGLCRCVQLETLTLTNCS 790



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 110/423 (26%), Positives = 173/423 (40%), Gaps = 93/423 (21%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF----- 113
           LL +DL+ + VTD G   L +C  +Q L    C  +SD     +R +  LTSL F     
Sbjct: 336 LLELDLTENRVTDEGCAALANCGQIQKLTLASCRCVSD-----VRWICALTSLRFLDLSK 390

Query: 114 -----------------RRNNAITAQGMKAFA---GLINLVKLDLERCTRIHGGLVNLKG 153
                               +  +  G+K  +   GL++L  LDL   +    G  +L+ 
Sbjct: 391 THVRSADLQLLTVCQRLEELHVASCSGVKDVSFVEGLLSLKHLDLTDTSIKDAGTQSLRK 450

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
              L  L+++ C  +TD  +  +  L NL SL +  ++V D+ I  L    KL LL+L  
Sbjct: 451 CTALTFLSLQDCRFLTD--IHFVEPLNNLLSLNLEGTEVVDANIIPLMHCTKLELLSLRH 508

Query: 214 CP--VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV- 270
           C       CL  L AL SL   +L+   ++D+G    S+  SL+ ++L     ++ CL+ 
Sbjct: 509 CLFLTDVRCLRELKALKSL---DLSGTYVTDEGISDVSQCISLERIDL-----SECCLIT 560

Query: 271 HLKGLTNLESLN---------LDSCGIGDEGLVN---------LTGLCNLKC-----LEL 307
           H + L  L +L          LD  G+G  G V          L  +C L+      L L
Sbjct: 561 HFEFLRPLTALKHVIADRMNVLDVTGLGGSGSVEGVSLADCKRLGSMCLLEAPRLLDLSL 620

Query: 308 SDTQVGSSGLR---------------------HLSGLTNLESINLSFT---GISDGSLRK 343
             + +  SG+                       LS +  L S+   F     I + S+  
Sbjct: 621 KKSTITDSGIHGVLLRCHSLRRLNLQNCTSITELSAVAQLPSLTELFVRNMKIKNKSVAF 680

Query: 344 LAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
           +A  ++L+ L + +   ITD    +L  L  L  LDL    +T  G   L +  NL+ L 
Sbjct: 681 VARCATLEKLQMVECVDITDVN--SLKYLHRLVELDLSRTSVTSGGIVGLASCYNLKKLN 738

Query: 403 ICG 405
           + G
Sbjct: 739 LSG 741


>gi|171910953|ref|ZP_02926423.1| probable G protein-coupled receptor LGR4 [Verrucomicrobium spinosum
           DSM 4136]
          Length = 400

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 116/244 (47%), Gaps = 16/244 (6%)

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNLE 212
           L K+ESLNI    C +D  + PL  L  LK+L+ + + K++D+G+  L GL +L   +  
Sbjct: 147 LSKIESLNIIATKC-SDDWIAPLGKLKTLKTLKFTNNGKLSDAGLEKLAGLNQLEAFSFV 205

Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDG----CEKFSKIGSLKVLNLGFNEITDEC 268
           G  +            +L  ++     + D+G    C KF    +L+ ++L   +  D  
Sbjct: 206 GTGMQGHAYAKFEGWTALTRVSHRGSSIDDEGLTLLCAKFP---NLESISLAHAKCGDAG 262

Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
           +  L  LT L+ L L S       LV++  + +L+ L+L D      G+  + G+T L  
Sbjct: 263 VAQLPKLTKLKGLELGSKNATPGSLVHVAKM-SLEYLQLGDGLDAPEGIAAIKGMTTLRR 321

Query: 329 INLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
           + L+    + D  L+ +AG+  L+SL L++ ++TD  L  L S + L  L     RI + 
Sbjct: 322 LTLTNAKSLGDADLQAVAGIKGLESLELNSVELTDERLPLLKSFSHLKEL-----RIVNR 376

Query: 388 GAAY 391
              Y
Sbjct: 377 PKGY 380



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 105/243 (43%), Gaps = 5/243 (2%)

Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLK 273
           P  AA  + +  L  +  LN+   + SDD      K+ +LK L    N +++D  L  L 
Sbjct: 135 PYDAAFFEHVGQLSKIESLNIIATKCSDDWIAPLGKLKTLKTLKFTNNGKLSDAGLEKLA 194

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLS 332
           GL  LE+ +    G+         G   L  +    + +   GL  L +   NLESI+L+
Sbjct: 195 GLNQLEAFSFVGTGMQGHAYAKFEGWTALTRVSHRGSSIDDEGLTLLCAKFPNLESISLA 254

Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
                D  + +L  L+ LK L L ++  T   L  +  ++ L +L L        G A +
Sbjct: 255 HAKCGDAGVAQLPKLTKLKGLELGSKNATPGSLVHVAKMS-LEYLQLGDGLDAPEGIAAI 313

Query: 393 RNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
           +    LR L +     L DA ++ +  +  L  L L+ +  LTD+ L L+   + L  L 
Sbjct: 314 KGMTTLRRLTLTNAKSLGDADLQAVAGIKGLESLELN-SVELTDERLPLLKSFSHLKELR 372

Query: 452 VSN 454
           + N
Sbjct: 373 IVN 375



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 98/213 (46%), Gaps = 25/213 (11%)

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESI 329
           H+  L+ +ESLN+ +    D+ +  L  L  LK L+ ++  ++  +GL  L+GL  LE+ 
Sbjct: 143 HVGQLSKIESLNIIATKCSDDWIAPLGKLKTLKTLKFTNNGKLSDAGLEKLAGLNQLEAF 202

Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLFGARITDSG 388
           +   TG+   +  K  G ++L  ++     I D GL  L      L  + L  A+  D+G
Sbjct: 203 SFVGTGMQGHAYAKFEGWTALTRVSHRGSSIDDEGLTLLCAKFPNLESISLAHAKCGDAG 262

Query: 389 AAYLRNFKNLRSLEI----------------------CGGGL-TDAGVKHIKDLSSLTLL 425
            A L     L+ LE+                       G GL    G+  IK +++L  L
Sbjct: 263 VAQLPKLTKLKGLELGSKNATPGSLVHVAKMSLEYLQLGDGLDAPEGIAAIKGMTTLRRL 322

Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
            L+   +L D  L+ ++G+ GL SL +++  +T
Sbjct: 323 TLTNAKSLGDADLQAVAGIKGLESLELNSVELT 355



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 112/262 (42%), Gaps = 31/262 (11%)

Query: 55  QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
           Q S + S+++  +  +D  +  L     L++L F    ++SD GLE L GL+ L + SF 
Sbjct: 146 QLSKIESLNIIATKCSDDWIAPLGKLKTLKTLKFTNNGKLSDAGLEKLAGLNQLEAFSF- 204

Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSD 172
               +       F G   L        TR+   G  ++ +GL  L       C       
Sbjct: 205 VGTGMQGHAYAKFEGWTAL--------TRVSHRGSSIDDEGLTLL-------C------- 242

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
               +   NL+S+ ++ +K  D+G+A L  L KL  L L     T   L  ++ + SL Y
Sbjct: 243 ----AKFPNLESISLAHAKCGDAGVAQLPKLTKLKGLELGSKNATPGSLVHVAKM-SLEY 297

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
           L L     + +G      + +L+ L L     + D  L  + G+  LESL L+S  + DE
Sbjct: 298 LQLGDGLDAPEGIAAIKGMTTLRRLTLTNAKSLGDADLQAVAGIKGLESLELNSVELTDE 357

Query: 292 GLVNLTGLCNLKCLELSDTQVG 313
            L  L    +LK L + +   G
Sbjct: 358 RLPLLKSFSHLKELRIVNRPKG 379


>gi|242083750|ref|XP_002442300.1| hypothetical protein SORBIDRAFT_08g017670 [Sorghum bicolor]
 gi|241942993|gb|EES16138.1| hypothetical protein SORBIDRAFT_08g017670 [Sorghum bicolor]
          Length = 489

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 177/374 (47%), Gaps = 58/374 (15%)

Query: 80  CSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
           C  L+ L   +C +ISD G++ L +    L SL+                  I+ +K+  
Sbjct: 10  CPRLEKLSLKWCREISDIGIDLLAKKCPELRSLN------------------ISYLKVG- 50

Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSG 196
                 +G L ++  L +LE L +  C+CI D  ++ LS G  +L+S+ +S C  VT  G
Sbjct: 51  ------NGSLRSISSLERLEELAMVCCSCIDDEGLELLSKGSDSLQSVDVSRCDHVTSEG 104

Query: 197 IAYL-KGLQKLTLLNLEGC--PVTAACLDSLSALG-SLFYLNLNRCQLSD-------DGC 245
           +A L  G   +  L    C   +    L  L+ L  +L  L L+  ++SD       + C
Sbjct: 105 LASLIDGRNFVQKLYAADCLHEIGQRFLSKLATLKETLTMLKLDGLEVSDSLLQAIGESC 164

Query: 246 EKFSKIGSLK---VLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN 301
            K  +IG  K   V + G + +  +C       ++L +++L  C  I +  L ++   C 
Sbjct: 165 NKLVEIGLSKCSGVTDDGISSLVAQC-------SDLRTIDLTCCNLITNNALDSIADNCK 217

Query: 302 -LKCLEL-SDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-A 357
            L+CL L S + +   GL+ ++    NL+ I+L+  G+ D +L  LA  S L+ L L   
Sbjct: 218 MLECLRLESCSLINEKGLKRIATCCPNLKEIDLTDCGVDDAALEHLAKCSELRILKLGLC 277

Query: 358 RQITDTGLAALTSLTG-LTHLDLFGAR-ITDSGAAYLRN-FKNLRSLEIC-GGGLTDAGV 413
             I+D G+A ++S  G L  LDL+    ITD G A L N  K ++ L +C    +TD G+
Sbjct: 278 SSISDKGIAFISSNCGKLVELDLYRCNSITDDGLAALVNGCKRIKLLNLCYCNKITDTGL 337

Query: 414 KHIKDLSSLTLLNL 427
            H+  L  LT L L
Sbjct: 338 GHLGSLEELTNLEL 351



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 98/203 (48%), Gaps = 28/203 (13%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
           +N+K +  IA+   +L  +DL+   V D+ L HL  CS L+ L    C  ISD G+  + 
Sbjct: 230 INEKGLKRIATCCPNLKEIDLTDCGVDDAALEHLAKCSELRILKLGLCSSISDKGIAFIS 289

Query: 104 G-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
                L  L   R N+IT  G+ A                     LVN  G  +++ LN+
Sbjct: 290 SNCGKLVELDLYRCNSITDDGLAA---------------------LVN--GCKRIKLLNL 326

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLK-GLQKLTLLNLEGC-PVTAA 219
            +CN ITD+ +  L  L  L +L++ C  ++T  GI+ +  G + L  L+L+ C  V  A
Sbjct: 327 CYCNKITDTGLGHLGSLEELTNLELRCLVRITGIGISSVAIGCKSLIELDLKRCYSVDDA 386

Query: 220 CLDSLSALG-SLFYLNLNRCQLS 241
            L +L+    +L  L ++ CQ++
Sbjct: 387 GLWALARYALNLRQLTISYCQVT 409


>gi|299469989|emb|CBN79166.1| Hypothetical leucine rich repeat protein [Ectocarpus siliculosus]
          Length = 894

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 124/260 (47%), Gaps = 5/260 (1%)

Query: 176 LSGLTNLKSLQISCSKVTDSGI-----AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           L  L NL+ L +S +K++           L  L +L  L L    +T    + L AL +L
Sbjct: 65  LGKLGNLQQLHLSSNKLSGRWFQGHIPKELGDLSQLQALELYRNQLTGPIPEELGALSNL 124

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
            +L+L   QL+ +      ++G+L+ LNL +N+++      L   +NL  L L S  + D
Sbjct: 125 LWLSLYSNQLTGEIPATLGQLGNLEELNLSWNKLSGPIPDVLGAHSNLRELLLSSNQLTD 184

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
           E    L  L NL+ L+LS  ++     + L GL+ L+++ L F  +S      L  LS+L
Sbjct: 185 EIPATLGQLGNLQQLDLSWNKLSGYIPQELGGLSQLQTLWLYFNQLSGPIPEALGTLSNL 244

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
           + L+L + ++TD   A L  L  L  L L   +++      L +   L++L +    LT 
Sbjct: 245 RELSLYSNRLTDEIPATLGQLGNLQQLRLSWNKLSGHIPQELGSLSQLQTLGLHHNQLTG 304

Query: 411 AGVKHIKDLSSLTLLNLSQN 430
              + + DLS L  L L+ N
Sbjct: 305 PIFEALGDLSELDFLVLNDN 324



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 109/226 (48%), Gaps = 1/226 (0%)

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
           L +L++L + + N +T    + L  L+NL  L +  +++T    A L  L  L  LNL  
Sbjct: 97  LSQLQALEL-YRNQLTGPIPEELGALSNLLWLSLYSNQLTGEIPATLGQLGNLEELNLSW 155

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
             ++    D L A  +L  L L+  QL+D+      ++G+L+ L+L +N+++      L 
Sbjct: 156 NKLSGPIPDVLGAHSNLRELLLSSNQLTDEIPATLGQLGNLQQLDLSWNKLSGYIPQELG 215

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
           GL+ L++L L    +       L  L NL+ L L   ++       L  L NL+ + LS+
Sbjct: 216 GLSQLQTLWLYFNQLSGPIPEALGTLSNLRELSLYSNRLTDEIPATLGQLGNLQQLRLSW 275

Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
             +S    ++L  LS L++L L   Q+T     AL  L+ L  L L
Sbjct: 276 NKLSGHIPQELGSLSQLQTLGLHHNQLTGPIFEALGDLSELDFLVL 321



 Score = 46.2 bits (108), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 89/197 (45%)

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
           + N +T      L  L NL+ L +S +K++      L     L  L L    +T     +
Sbjct: 130 YSNQLTGEIPATLGQLGNLEELNLSWNKLSGPIPDVLGAHSNLRELLLSSNQLTDEIPAT 189

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           L  LG+L  L+L+  +LS    ++   +  L+ L L FN+++      L  L+NL  L+L
Sbjct: 190 LGQLGNLQQLDLSWNKLSGYIPQELGGLSQLQTLWLYFNQLSGPIPEALGTLSNLRELSL 249

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
            S  + DE    L  L NL+ L LS  ++     + L  L+ L+++ L    ++      
Sbjct: 250 YSNRLTDEIPATLGQLGNLQQLRLSWNKLSGHIPQELGSLSQLQTLGLHHNQLTGPIFEA 309

Query: 344 LAGLSSLKSLNLDARQI 360
           L  LS L  L L+  Q+
Sbjct: 310 LGDLSELDFLVLNDNQL 326


>gi|354476331|ref|XP_003500378.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cricetulus griseus]
          Length = 340

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 86/251 (34%), Positives = 137/251 (54%), Gaps = 25/251 (9%)

Query: 239 QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLV 294
           Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + D G+ 
Sbjct: 72  QITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIG 131

Query: 295 NLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRK 343
           +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD  L  
Sbjct: 132 HLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLH 191

Query: 344 LAGLSSLKSLNLDARQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLR 399
           L+ + SL+    D   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +    L+
Sbjct: 192 LSHMGSLRLPTCD--NISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLK 248

Query: 400 SLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SR 456
           SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  +++   +R
Sbjct: 249 SLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTR 308

Query: 457 ITSAGLRHLNH 467
           IT  GL  +  
Sbjct: 309 ITKRGLERITQ 319



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 128/238 (53%), Gaps = 38/238 (15%)

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQIS-CSKVTDSGIAYL-KG 202
           GL +L+SLN++ C  ++D  +  L+G+T         L+ L +  C K+TD  + ++ +G
Sbjct: 110 GLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRG 169

Query: 203 LQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LN 258
           L  L LLNL  C  ++ A L  LS +GS   L L  C  +SD G    + +GSL++  L+
Sbjct: 170 LTGLRLLNLSFCGGISDAGLLHLSHMGS---LRLPTCDNISDTGIMHLA-MGSLRLSGLD 225

Query: 259 LGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL----VNLTGLCNL---KCLELSD 309
           + F +++ D+ L ++ +GL  L+SL+L SC I D+G+      + GL  L   +C+ ++D
Sbjct: 226 VSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITD 285

Query: 310 TQVGSSGL----RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
                 GL     HLS LT ++      T I+   L ++  L  LK LNL   Q+TD+
Sbjct: 286 -----KGLELIAEHLSQLTGIDLYG--CTRITKRGLERITQLPCLKVLNLGLWQMTDS 336



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 138/287 (48%), Gaps = 38/287 (13%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
           + D  +  IA     L  ++L G S++T++GL+ +      L+SL+   C  +SD G+ H
Sbjct: 73  ITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGH 132

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL------KGLM 155
           L G++                   A  G + L +L L+ C +    L +L      +GL 
Sbjct: 133 LAGMTR-----------------SAAEGCLGLEQLTLQDCQK----LTDLSLKHISRGLT 171

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
            L  LN+ +C  I+D+ +  LS + +L+    +C  ++D+GI +L  G  +L+ L++  C
Sbjct: 172 GLRLLNLSFCGGISDAGLLHLSHMGSLR--LPTCDNISDTGIMHLAMGSLRLSGLDVSFC 229

Query: 215 -PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLV 270
             V    L  ++  L  L  L+L  C +SDDG  +  + +  L+ LN+G    ITD+ L 
Sbjct: 230 DKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLE 289

Query: 271 HL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 315
            + + L+ L  ++L  C  I   GL  +T L  LK L L   Q+  S
Sbjct: 290 LIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 336


>gi|424713203|ref|YP_007013918.1| Internalin-I [Listeria monocytogenes serotype 4b str. LL195]
 gi|424012387|emb|CCO62927.1| Internalin-I [Listeria monocytogenes serotype 4b str. LL195]
          Length = 1631

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 108/386 (27%), Positives = 172/386 (44%), Gaps = 67/386 (17%)

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
           +E L+ L NLTSL+   NN      +     L+NLV L+L      +  LVNL G     
Sbjct: 28  IEGLQYLENLTSLNLSENN---ISDLAPIKDLVNLVSLNLSS----NRTLVNLSG----- 75

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
                            + GL NL+ L +S +K  +  I+ +  L  L  ++ +GC +  
Sbjct: 76  -----------------VEGLVNLQELNVSANKALED-ISQVAALPVLKEISAQGCNIKT 117

Query: 219 ACLDSLSA--LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
             LD+ +   L  L    L    L+D      +K+  LK L +  N  + + L  LKG T
Sbjct: 118 LELDNPAGAILPELETFYLQENDLTD--LTSLAKLPKLKNLYIKGNA-SLKSLATLKGAT 174

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES-INLSFTG 335
            L+ ++  +C    E L +++GL  L+ ++LS    G S L+ ++ L +L + +N++   
Sbjct: 175 KLQLIDASNC-TDLETLGDISGLSELEMIQLS----GCSKLKEITSLKDLPNLVNITADS 229

Query: 336 ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            +   L  L  L  L++L L D + +T+  + A+T +  L  L L G  IT  G   L N
Sbjct: 230 CAIEDLGTLNNLPKLQTLILSDNKDLTN--INAITDMPQLKTLALDGCGITSIGT--LDN 285

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN----------------CNLTDKTL 438
              L  L++    LT   +  I DL  L+ L++S N                 N++   L
Sbjct: 286 LPKLEKLDLKENQLTS--ISEINDLPRLSYLDVSVNYLTTIGELKKLPLLEWLNVSSNRL 343

Query: 439 ELISGLTGLVSL---NVSNSRITSAG 461
             +S LT   SL   NVSN+ I + G
Sbjct: 344 SDVSTLTNFPSLNYINVSNNVIRTVG 369



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 114/441 (25%), Positives = 185/441 (41%), Gaps = 76/441 (17%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           S L  + LSG       +  LKD  NL ++  + C  I D G   L  L  L +L    N
Sbjct: 197 SELEMIQLSGCSKLKE-ITSLKDLPNLVNITADSC-AIEDLGT--LNNLPKLQTLILSDN 252

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             +T   + A   +  L  L L+ C     G   L  L KLE L++K     + S+   +
Sbjct: 253 KDLT--NINAITDMPQLKTLALDGCGITSIG--TLDNLPKLEKLDLKENQLTSISE---I 305

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           + L  L  L +S + +T   I  LK L  L  LN+    ++   + +L+   SL Y+N++
Sbjct: 306 NDLPRLSYLDVSVNYLTT--IGELKKLPLLEWLNVSSNRLSD--VSTLTNFPSLNYINVS 361

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
              +   G  K +++ SLK      N ++D  ++H   + NL  ++  +  I + G    
Sbjct: 362 NNVIRTVG--KMTELPSLKEFYAQNNNVSDISMIH--DMPNLRKVDASNNLITNIG--TF 415

Query: 297 TGLCNLKCLELSDTQVGSSGLRH--------------------LSGLTNLESINLSFTGI 336
             L  L+ L++   ++ ++ + H                    +  L  L  ++LSF  I
Sbjct: 416 DNLPKLQNLDVHSNRITNTSVIHDLPSLETFYAQNNLITNIGTMDNLPELTYVDLSFNRI 475

Query: 337 SD----GSLRKLA------------------GLSSLKSLNLDARQITDTG----LAALTS 370
                 G L KL                   G+S L++L L    +  TG    L+AL+ 
Sbjct: 476 PSLAPIGDLPKLEILKVTDNYSYLRSLGTMDGVSKLRNLELQNNYLNYTGTEGNLSALSD 535

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           LT LT L+L      D+G  Y+ +   L +L        D+    IKD+S+L+ L   Q 
Sbjct: 536 LTNLTELNL-----RDNG--YISDISGLSTLSRLIYLNLDS--NKIKDISALSNLTTLQE 586

Query: 431 CNLTDKTLELISGLTGLVSLN 451
             L +  +E IS L+ L +LN
Sbjct: 587 LTLENNQIEDISALSDLDNLN 607


>gi|422417931|ref|ZP_16494886.1| internalin-I [Listeria seeligeri FSL N1-067]
 gi|313634795|gb|EFS01226.1| internalin-I [Listeria seeligeri FSL N1-067]
          Length = 1687

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 111/424 (26%), Positives = 185/424 (43%), Gaps = 69/424 (16%)

Query: 61  SVDLSGSDVTDS-GLIHLK--DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           + D +G +V DS GL+ +   + S    +D     +     +E  + L N+TS+    NN
Sbjct: 127 NADATGDEVADSAGLLSITQLNLSGETGID-----ETDIASIEGFQYLENVTSVDLSENN 181

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
                 +     L  +V L+L     +   L  ++GL  L+ LN+  C  +  +D+ P++
Sbjct: 182 LTD---ITPLTDLTKIVTLNLSSNQNLED-LNGVEGLTNLQDLNVSTCKSL--ADISPVA 235

Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
            L  LK +      +           Q L L N EG        D+L  L + FYL  N 
Sbjct: 236 ALPALKEISAQGCNI-----------QTLELENPEG--------DALPELET-FYLQEND 275

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
            Q         + +  LK L +  N  + E L  L G T+++ ++  +C    E + +++
Sbjct: 276 LQ----DLTALATLPKLKNLYIKGNS-SLESLETLNGSTSIQLIDASNC-TDMETVGDIS 329

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESI-NLSFTGISDGSLRKLAGLSSLKSLNLD 356
           G+  L+ ++LS    G S L+ ++ L NL ++ N++        L  L  L  L++L L 
Sbjct: 330 GITTLEMIQLS----GCSKLKEITDLKNLPNLTNITANNCIIEDLGTLENLPKLQTLILS 385

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
             +   T + A+  L  L  + L G  IT+ G   L N   L  L+I G  +TD  +  I
Sbjct: 386 GNE-NLTDVDAINDLPQLKTVALDGCGITNIGT--LENLPKLEKLDIKGNKVTD--ISEI 440

Query: 417 KDLSSLTLLNLSQN----------------CNLTDKTLELISGLTGLVSL---NVSNSRI 457
            DL  L+ L+ S+N                 NL++  L+ +S +    SL   NVSN+ I
Sbjct: 441 TDLPRLSYLDASENQLTTIGTLAKLPLLDWLNLSENQLKDVSAINNFPSLNYINVSNNSI 500

Query: 458 TSAG 461
           T+ G
Sbjct: 501 TTFG 504



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 111/415 (26%), Positives = 195/415 (46%), Gaps = 53/415 (12%)

Query: 57  SSLLSVDLSG----SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
           ++L  + LSG     ++TD     LK+  NL ++  N CI    G LE+L     L +L 
Sbjct: 332 TTLEMIQLSGCSKLKEITD-----LKNLPNLTNITANNCIIEDLGTLENL---PKLQTLI 383

Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
              N  +T   + A   L  L  + L+ C   + G   L+ L KLE L+IK  N +TD  
Sbjct: 384 LSGNENLT--DVDAINDLPQLKTVALDGCGITNIG--TLENLPKLEKLDIKG-NKVTD-- 436

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
           +  ++ L  L  L  S +++T   I  L  L  L  LNL    +    + +++   SL Y
Sbjct: 437 ISEITDLPRLSYLDASENQLTT--IGTLAKLPLLDWLNLSENQLKD--VSAINNFPSLNY 492

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           +N++   ++  G  K +++ SLK     FN++TD  ++H   + NL  LN+ +  I + G
Sbjct: 493 INVSNNSITTFG--KMTELPSLKEFYGQFNKVTDISMIH--DMPNLRKLNVSNNLINNLG 548

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
                 L  L+ L++   ++ ++ + H     +LE+ + S   IS  +L  +  L  + +
Sbjct: 549 --TFENLPKLQNLDIHSNKITNTTVIH--DFPSLETYDASSNLIS--TLGTMDNLPEVTT 602

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN------LRSLEICGG 406
           +NL + +I      +L  +  L  LD     + +S ++YLR   +      L+ LE+   
Sbjct: 603 INLSSNRI-----PSLEPIGDLPKLDTL---LVNSNSSYLRTVGSLDGLPALQILELNSN 654

Query: 407 GLT----DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
            +     +A +    DL++LT L++  N  + D  L  +S LT L  L + N++I
Sbjct: 655 YINYSGKEATLSAFSDLTNLTELSMKDNYYIVD--LSGLSSLTNLRYLYLDNNKI 707



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 104/412 (25%), Positives = 185/412 (44%), Gaps = 42/412 (10%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS-FRRN 116
           ++ SVDLS +++TD  +  L D + + +L+ +     S+  LE L G+  LT+L     +
Sbjct: 171 NVTSVDLSENNLTD--ITPLTDLTKIVTLNLS-----SNQNLEDLNGVEGLTNLQDLNVS 223

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG--LMKLESLNIKWCNCITDSDMK 174
              +   +   A L  L ++  + C      L N +G  L +LE+  ++  +     D+ 
Sbjct: 224 TCKSLADISPVAALPALKEISAQGCNIQTLELENPEGDALPELETFYLQENDL---QDLT 280

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
            L+ L  LK+L I  +   +S +  L G   + L++   C       D +S + +L  + 
Sbjct: 281 ALATLPKLKNLYIKGNSSLES-LETLNGSTSIQLIDASNCTDMETVGD-ISGITTLEMIQ 338

Query: 235 LNRCQLSDDGCEKFSKIGSLKVL----NLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
           L+       GC K  +I  LK L    N+  N    E L  L+ L  L++L L     G+
Sbjct: 339 LS-------GCSKLKEITDLKNLPNLTNITANNCIIEDLGTLENLPKLQTLILS----GN 387

Query: 291 EGLVNLTGLCNLKCLE-LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
           E L ++  + +L  L+ ++    G + +  L  L  LE +++    ++D  + ++  L  
Sbjct: 388 ENLTDVDAINDLPQLKTVALDGCGITNIGTLENLPKLEKLDIKGNKVTD--ISEITDLPR 445

Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409
           L  L+    Q+T  G   L  L  L  L+L   ++ D  A  + NF +L  + +    +T
Sbjct: 446 LSYLDASENQLTTIG--TLAKLPLLDWLNLSENQLKDVSA--INNFPSLNYINVSNNSIT 501

Query: 410 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
             G   + +L SL      Q   +TD  + +I  +  L  LNVSN+ I + G
Sbjct: 502 TFG--KMTELPSLKEF-YGQFNKVTD--ISMIHDMPNLRKLNVSNNLINNLG 548


>gi|427735492|ref|YP_007055036.1| Leucine Rich Repeat (LRR)-containing protein [Rivularia sp. PCC
           7116]
 gi|427370533|gb|AFY54489.1| Leucine Rich Repeat (LRR)-containing protein [Rivularia sp. PCC
           7116]
          Length = 344

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 119/240 (49%), Gaps = 18/240 (7%)

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           SD+KPLS LTNL  L +  + +  S +  L  L  LT L+L    ++   +  ++ L  L
Sbjct: 110 SDIKPLSKLTNLTKLYLDSNNI--SQVKELANLINLTELSLSYNQLSH--VKGITNLTKL 165

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
            YLNL+R Q++D      + + +L  L L  N+I  E +  L  L NL  L +    I +
Sbjct: 166 EYLNLHRNQITD--IRPLANLTNLIKLQLSSNQI--ESIKPLSKLNNLTELIVYQNKINE 221

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
             +  +T L NLK L +    +  S ++ L  LTNL  + ++   IS+  +  LA LS+L
Sbjct: 222 --VKEITNLINLKYLNIGKNNI--SNVKPLWELTNLIELYINENKISN--IETLADLSNL 275

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
           K L L   QI+D  +  L  LT LT L++   +I D  A  L N  NL  L   G  + +
Sbjct: 276 KELGLWKNQISD--ITPLWQLTNLTKLNIQENKIIDIKA--LANLTNLTYLNAAGNPIQN 331



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 101/214 (47%), Gaps = 44/214 (20%)

Query: 94  ISDGGLEHLRGLSNLTSLSF--RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
           +S   L H++G++NLT L +     N IT   ++  A L NL+KL L         + ++
Sbjct: 148 LSYNQLSHVKGITNLTKLEYLNLHRNQIT--DIRPLANLTNLIKLQLS-----SNQIESI 200

Query: 152 KGLMKLESLN--IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
           K L KL +L   I + N I  +++K ++ L NLK L I       + I+ +K L +LT  
Sbjct: 201 KPLSKLNNLTELIVYQNKI--NEVKEITNLINLKYLNIG-----KNNISNVKPLWELT-- 251

Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
                              +L  L +N  ++S+   E  + + +LK L L  N+I+D  +
Sbjct: 252 -------------------NLIELYINENKISN--IETLADLSNLKELGLWKNQISD--I 288

Query: 270 VHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNL 302
             L  LTNL  LN+    I D + L NLT L  L
Sbjct: 289 TPLWQLTNLTKLNIQENKIIDIKALANLTNLTYL 322


>gi|85679238|gb|ABC72035.1| InlA [Listeria monocytogenes]
          Length = 791

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 119/388 (30%), Positives = 185/388 (47%), Gaps = 71/388 (18%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
           L+  +NL  ++F F  Q++D  +  L+ L+ L  +    NN IT   +   A L NL  L
Sbjct: 93  LEYLNNLTQINFGFN-QLTD--ITPLKDLTKLVDI-VMNNNQIT--DISPLANLTNLTGL 146

Query: 137 DL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
            L   + T I   L NL  L +LE       +  T SD+  LSGLTNL+ L    ++VTD
Sbjct: 147 TLFNNQITDIDA-LKNLTNLNRLE------LSSNTISDISALSGLTNLQQLSFG-NQVTD 198

Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
                LK L  LT   LE   +++  +  +S L                   K + + SL
Sbjct: 199 -----LKPLANLT--TLERLDISSNKVSDISVLA------------------KLTNLESL 233

Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
              N   N+I+D  +  L  LTNL+ L+L+   + D G   L  L NL  L+L++ Q+  
Sbjct: 234 IATN---NQISD--ITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI-- 284

Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
           S L  LSGLT L  + L    IS+  +  LAGL++L +L L+  Q+ D  ++ +++L  L
Sbjct: 285 SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNL 340

Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
           T+L L+   I+D   + + +   L+ L      ++D  V  + +L+++  L+   N    
Sbjct: 341 TYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--- 393

Query: 435 DKTLELISGLTGLVSLNVSNSRITSAGL 462
                 IS LT L +L    +RIT  GL
Sbjct: 394 ------ISDLTPLANL----TRITQLGL 411



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 121/249 (48%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD----EGLVNLTG 298
           DG E    + +L  +N GFN++TD  +  LK LT L  + +++  I D      L NLTG
Sbjct: 91  DGLEY---LNNLTQINFGFNQLTD--ITPLKDLTKLVDIVMNNNQITDISPLANLTNLTG 145

Query: 299 LC----------------NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
           L                 NL  LELS   +  S +  LSGLTNL+   LSF G     L+
Sbjct: 146 LTLFNNQITDIDALKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVTDLK 200

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
            LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL  L 
Sbjct: 201 PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELS 256

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 257 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 311

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 312 LAGLTALTN 320


>gi|405754422|ref|YP_006677886.1| internalin I [Listeria monocytogenes SLCC2540]
 gi|404223622|emb|CBY74984.1| internalin I (LPXTG motif) [Listeria monocytogenes SLCC2540]
          Length = 1775

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 108/386 (27%), Positives = 172/386 (44%), Gaps = 67/386 (17%)

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
           +E L+ L NLTSL+   NN      +     L+NLV L+L      +  LVNL G     
Sbjct: 172 IEGLQYLENLTSLNLSENN---ISDLAPIKDLVNLVSLNLSS----NRTLVNLSG----- 219

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
                            + GL NL+ L +S +K  +  I+ +  L  L  ++ +GC +  
Sbjct: 220 -----------------VEGLVNLQELNVSANKALED-ISQVAALPVLKEISAQGCNIKT 261

Query: 219 ACLDSLSA--LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
             LD+ +   L  L    L    L+D      +K+  LK L +  N  + + L  LKG T
Sbjct: 262 LELDNPAGDILPELETFYLQENDLTD--LTSLAKLPKLKNLYIKGNA-SLKSLATLKGAT 318

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES-INLSFTG 335
            L+ ++  +C    E L +++GL  L+ ++LS    G S L+ ++ L +L + +N++   
Sbjct: 319 KLQLIDASNC-TDLETLGDISGLSELEMIQLS----GCSKLKEITSLKDLPNLVNITADS 373

Query: 336 ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            +   L  L  L  L++L L D + +T+  + A+T +  L  L L G  IT  G   L N
Sbjct: 374 CAIEDLGTLNNLPKLQTLILSDNKDLTN--INAITDMPQLKTLALDGCGITSIGT--LDN 429

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN----------------CNLTDKTL 438
              L  L++    LT   +  I DL  L+ L++S N                 N++   L
Sbjct: 430 LPKLEKLDLKENQLTS--ISEINDLPRLSYLDVSVNYLTTIGELKKLPLLEWLNVSSNRL 487

Query: 439 ELISGLTGLVSL---NVSNSRITSAG 461
             +S LT   SL   NVSN+ I + G
Sbjct: 488 SDVSTLTNFPSLNYINVSNNVIRTVG 513



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 115/441 (26%), Positives = 185/441 (41%), Gaps = 76/441 (17%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           S L  + LSG       +  LKD  NL ++  + C  I D G   L  L  L +L    N
Sbjct: 341 SELEMIQLSGCSKLKE-ITSLKDLPNLVNITADSC-AIEDLGT--LNNLPKLQTLILSDN 396

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             +T   + A   +  L  L L+ C     G   L  L KLE L++K     + S+   +
Sbjct: 397 KDLT--NINAITDMPQLKTLALDGCGITSIG--TLDNLPKLEKLDLKENQLTSISE---I 449

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           + L  L  L +S + +T   I  LK L  L  LN+    ++   + +L+   SL Y+N++
Sbjct: 450 NDLPRLSYLDVSVNYLTT--IGELKKLPLLEWLNVSSNRLSD--VSTLTNFPSLNYINVS 505

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
              +   G  K +++ SLK      N I+D  ++H   + NL  ++  +  I + G    
Sbjct: 506 NNVIRTVG--KMTELPSLKEFYAQNNNISDISMIH--DMPNLRKVDASNNLITNIG--TF 559

Query: 297 TGLCNLKCLELSDTQVGSSGLRH--------------------LSGLTNLESINLSFTGI 336
             L  L+ L++   ++ ++ + H                    +  L  L  ++LSF  I
Sbjct: 560 DNLPKLQNLDVHSNRITNTSVIHDLPSLETFYAQNNLITNIGTMDNLPELTYVDLSFNRI 619

Query: 337 SD----GSLRKLA------------------GLSSLKSLNLDARQITDTG----LAALTS 370
                 G L KL                   G+S L++L L    +  TG    L+AL+ 
Sbjct: 620 PSLAPIGDLPKLEILKVTDNYSYLRSLGTMDGVSKLRNLELQNNYLNYTGTEGNLSALSD 679

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           LT LT L+L      D+G  Y+ +   L +L        D+    IKD+S+L+ L   Q 
Sbjct: 680 LTNLTELNL-----RDNG--YISDISGLSTLSRLIYLNLDS--NKIKDISALSNLTTLQE 730

Query: 431 CNLTDKTLELISGLTGLVSLN 451
             L +  +E IS L+ L +LN
Sbjct: 731 LTLENNQIEDISALSDLDNLN 751


>gi|226222958|ref|YP_002757065.1| internalin proteins, peptidoglycan bound protein (LPXTG motif)
           [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|386731097|ref|YP_006204593.1| internalin protein, peptidoglycan bound protein (LPXTG motif)
           [Listeria monocytogenes 07PF0776]
 gi|406703104|ref|YP_006753458.1| internalin I (LPXTG motif) [Listeria monocytogenes L312]
 gi|225875420|emb|CAS04117.1| Putative internalin proteins, putative peptidoglycan bound protein
           (LPXTG motif) [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|384389855|gb|AFH78925.1| internalin protein, peptidoglycan bound protein (LPXTG motif)
           [Listeria monocytogenes 07PF0776]
 gi|406360134|emb|CBY66407.1| internalin I (LPXTG motif) [Listeria monocytogenes L312]
          Length = 1775

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 108/386 (27%), Positives = 172/386 (44%), Gaps = 67/386 (17%)

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
           +E L+ L NLTSL+   NN      +     L+NLV L+L      +  LVNL G     
Sbjct: 172 IEGLQYLENLTSLNLSENN---ISDLAPIKDLVNLVSLNLSS----NRTLVNLSG----- 219

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
                            + GL NL+ L +S +K  +  I+ +  L  L  ++ +GC +  
Sbjct: 220 -----------------VEGLVNLQELNVSANKALED-ISQVAALPVLKEISAQGCNIKT 261

Query: 219 ACLDSLSA--LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
             LD+ +   L  L    L    L+D      +K+  LK L +  N  + + L  LKG T
Sbjct: 262 LELDNPAGAILPELETFYLQENDLTD--LTSLAKLPKLKNLYIKGNA-SLKSLATLKGAT 318

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES-INLSFTG 335
            L+ ++  +C    E L +++GL  L+ ++LS    G S L+ ++ L +L + +N++   
Sbjct: 319 KLQLIDASNC-TDLETLGDISGLSELEMIQLS----GCSKLKEITSLKDLPNLVNITADS 373

Query: 336 ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            +   L  L  L  L++L L D + +T+  + A+T +  L  L L G  IT  G   L N
Sbjct: 374 CAIEDLGTLNNLPKLQTLILSDNKDLTN--INAITDMPQLKTLALDGCGITSIGT--LDN 429

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN----------------CNLTDKTL 438
              L  L++    LT   +  I DL  L+ L++S N                 N++   L
Sbjct: 430 LPKLEKLDLKENQLTS--ISEINDLPRLSYLDVSVNYLTTIGELKKLPLLEWLNVSSNRL 487

Query: 439 ELISGLTGLVSL---NVSNSRITSAG 461
             +S LT   SL   NVSN+ I + G
Sbjct: 488 SDVSTLTNFPSLNYINVSNNVIRTVG 513



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 115/441 (26%), Positives = 185/441 (41%), Gaps = 76/441 (17%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           S L  + LSG       +  LKD  NL ++  + C  I D G   L  L  L +L    N
Sbjct: 341 SELEMIQLSGCSKLKE-ITSLKDLPNLVNITADSC-AIEDLGT--LNNLPKLQTLILSDN 396

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             +T   + A   +  L  L L+ C     G   L  L KLE L++K     + S+   +
Sbjct: 397 KDLT--NINAITDMPQLKTLALDGCGITSIG--TLDNLPKLEKLDLKENQLTSISE---I 449

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           + L  L  L +S + +T   I  LK L  L  LN+    ++   + +L+   SL Y+N++
Sbjct: 450 NDLPRLSYLDVSVNYLTT--IGELKKLPLLEWLNVSSNRLSD--VSTLTNFPSLNYINVS 505

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
              +   G  K +++ SLK      N I+D  ++H   + NL  ++  +  I + G    
Sbjct: 506 NNVIRTVG--KMTELPSLKEFYAQNNNISDISMIH--DMPNLRKVDASNNLITNIG--TF 559

Query: 297 TGLCNLKCLELSDTQVGSSGLRH--------------------LSGLTNLESINLSFTGI 336
             L  L+ L++   ++ ++ + H                    +  L  L  ++LSF  I
Sbjct: 560 DNLPKLQNLDVHSNRITNTSVIHDLPSLETFYAQNNLITNIGTMDNLPELTYVDLSFNRI 619

Query: 337 SD----GSLRKLA------------------GLSSLKSLNLDARQITDTG----LAALTS 370
                 G L KL                   G+S L++L L    +  TG    L+AL+ 
Sbjct: 620 PSLAPIGDLPKLEILKVTDNYSYLRSLGTMDGVSKLRNLELQNNYLNYTGTEGNLSALSD 679

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           LT LT L+L      D+G  Y+ +   L +L        D+    IKD+S+L+ L   Q 
Sbjct: 680 LTNLTELNL-----RDNG--YISDISGLSTLSRLIYLNLDS--NKIKDISALSNLTTLQE 730

Query: 431 CNLTDKTLELISGLTGLVSLN 451
             L +  +E IS L+ L +LN
Sbjct: 731 LTLENNQIEDISALSDLDNLN 751


>gi|254854582|ref|ZP_05243930.1| cell wall surface anchor family protein [Listeria monocytogenes FSL
           R2-503]
 gi|300766483|ref|ZP_07076434.1| cell wall surface anchor family protein [Listeria monocytogenes FSL
           N1-017]
 gi|404279887|ref|YP_006680785.1| internalin I [Listeria monocytogenes SLCC2755]
 gi|404285703|ref|YP_006692289.1| internalin I [Listeria monocytogenes serotype 7 str. SLCC2482]
 gi|258607981|gb|EEW20589.1| cell wall surface anchor family protein [Listeria monocytogenes FSL
           R2-503]
 gi|300512809|gb|EFK39905.1| cell wall surface anchor family protein [Listeria monocytogenes FSL
           N1-017]
 gi|404226522|emb|CBY47927.1| internalin I (LPXTG motif) [Listeria monocytogenes SLCC2755]
 gi|404244632|emb|CBY02857.1| internalin I (LPXTG motif) [Listeria monocytogenes serotype 7 str.
           SLCC2482]
          Length = 1775

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 108/386 (27%), Positives = 172/386 (44%), Gaps = 67/386 (17%)

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
           +E L+ L NLTSL+   NN      +     L+NLV L+L      +  LVNL G     
Sbjct: 172 IEGLQYLENLTSLNLSENN---ISDLAPIKDLVNLVSLNLSS----NRTLVNLSG----- 219

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
                            + GL NL+ L +S +K  +  I+ +  L  L  ++ +GC +  
Sbjct: 220 -----------------VEGLVNLQELNVSANKALED-ISQVAALPVLKEISAQGCNIKT 261

Query: 219 ACLDSLSA--LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
             LD+ +   L  L    L    L+D      +K+  LK L +  N  + + L  LKG T
Sbjct: 262 LELDNPAGAILPELETFYLQENDLTD--LTSLAKLPKLKNLYIKGNA-SLKSLATLKGAT 318

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES-INLSFTG 335
            L+ ++  +C    E L +++GL  L+ ++LS    G S L+ ++ L +L + +N++   
Sbjct: 319 KLQLIDASNC-TDLETLGDISGLSELEMIQLS----GCSKLKEITSLKDLPNLVNITADS 373

Query: 336 ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            +   L  L  L  L++L L D + +T+  + A+T +  L  L L G  IT  G   L N
Sbjct: 374 CAIEDLGTLNNLPKLQTLILSDNKDLTN--INAITDMPQLKTLALDGCGITSIGT--LDN 429

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN----------------CNLTDKTL 438
              L  L++    LT   +  I DL  L+ L++S N                 N++   L
Sbjct: 430 LPKLEKLDLKENQLTS--ISEINDLPRLSYLDVSVNYLTTIGELKKLPLLEWLNVSSNRL 487

Query: 439 ELISGLTGLVSL---NVSNSRITSAG 461
             +S LT   SL   NVSN+ I + G
Sbjct: 488 SDVSTLTNFPSLNYINVSNNVIRTVG 513



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 115/441 (26%), Positives = 185/441 (41%), Gaps = 76/441 (17%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           S L  + LSG       +  LKD  NL ++  + C  I D G   L  L  L +L    N
Sbjct: 341 SELEMIQLSGCSKLKE-ITSLKDLPNLVNITADSC-AIEDLGT--LNNLPKLQTLILSDN 396

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             +T   + A   +  L  L L+ C     G   L  L KLE L++K     + S+   +
Sbjct: 397 KDLT--NINAITDMPQLKTLALDGCGITSIG--TLDNLPKLEKLDLKENQLTSISE---I 449

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           + L  L  L +S + +T   I  LK L  L  LN+    ++   + +L+   SL Y+N++
Sbjct: 450 NDLPRLSYLDVSVNYLTT--IGELKKLPLLEWLNVSSNRLSD--VSTLTNFPSLNYINVS 505

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
              +   G  K +++ SLK      N I+D  ++H   + NL  ++  +  I + G    
Sbjct: 506 NNVIRTVG--KMTELPSLKEFYAQNNNISDISMIH--DMPNLRKVDASNNLITNIG--TF 559

Query: 297 TGLCNLKCLELSDTQVGSSGLRH--------------------LSGLTNLESINLSFTGI 336
             L  L+ L++   ++ ++ + H                    +  L  L  ++LSF  I
Sbjct: 560 DNLPKLQNLDVHSNRITNTSVIHDLPSLETFYAQNNLITNIGTMDNLPELTYVDLSFNRI 619

Query: 337 SD----GSLRKLA------------------GLSSLKSLNLDARQITDTG----LAALTS 370
                 G L KL                   G+S L++L L    +  TG    L+AL+ 
Sbjct: 620 PSLAPIGDLPKLEILKVTDNYSYLRSLGTMDGVSKLRNLELQNNYLNYTGTEGNLSALSD 679

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           LT LT L+L      D+G  Y+ +   L +L        D+    IKD+S+L+ L   Q 
Sbjct: 680 LTNLTELNL-----RDNG--YISDISGLSTLSRLIYLNLDS--NKIKDISALSNLTTLQE 730

Query: 431 CNLTDKTLELISGLTGLVSLN 451
             L +  +E IS L+ L +LN
Sbjct: 731 LTLENNQIEDISALSDLDNLN 751


>gi|46906570|ref|YP_012959.1| cell wall surface anchor family protein [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47091468|ref|ZP_00229265.1| cell wall surface anchor family protein [Listeria monocytogenes
           str. 4b H7858]
 gi|81830300|sp|Q723X5.1|INLI_LISMF RecName: Full=Internalin-I; Flags: Precursor
 gi|46879835|gb|AAT03136.1| cell wall surface anchor family protein [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47020145|gb|EAL10881.1| cell wall surface anchor family protein [Listeria monocytogenes
           str. 4b H7858]
          Length = 1775

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 108/386 (27%), Positives = 172/386 (44%), Gaps = 67/386 (17%)

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
           +E L+ L NLTSL+   NN      +     L+NLV L+L      +  LVNL G     
Sbjct: 172 IEGLQYLENLTSLNLSENN---ISDLAPIKDLVNLVSLNLSS----NRTLVNLSG----- 219

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
                            + GL NL+ L +S +K  +  I+ +  L  L  ++ +GC +  
Sbjct: 220 -----------------VEGLVNLQELNVSANKALED-ISQVAALPVLKEISAQGCNIKT 261

Query: 219 ACLDSLSA--LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
             LD+ +   L  L    L    L+D      +K+  LK L +  N  + + L  LKG T
Sbjct: 262 LELDNPAGAILPELETFYLQENDLTD--LTSLAKLPKLKNLYIKGNA-SLKSLATLKGAT 318

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES-INLSFTG 335
            L+ ++  +C    E L +++GL  L+ ++LS    G S L+ ++ L +L + +N++   
Sbjct: 319 KLQLIDASNC-TDLETLGDISGLSELEMIQLS----GCSKLKEITSLKDLPNLVNITADS 373

Query: 336 ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            +   L  L  L  L++L L D + +T+  + A+T +  L  L L G  IT  G   L N
Sbjct: 374 CAIEDLGTLNNLPKLQTLILSDNKDLTN--INAITDMPQLKTLALDGCGITSIGT--LDN 429

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN----------------CNLTDKTL 438
              L  L++    LT   +  I DL  L+ L++S N                 N++   L
Sbjct: 430 LPKLEKLDLKENQLTS--ISEINDLPRLSYLDVSVNYLTTIGELKKLPLLEWLNVSSNRL 487

Query: 439 ELISGLTGLVSL---NVSNSRITSAG 461
             +S LT   SL   NVSN+ I + G
Sbjct: 488 SDVSTLTNFPSLNYINVSNNVIRTVG 513



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 114/441 (25%), Positives = 185/441 (41%), Gaps = 76/441 (17%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           S L  + LSG       +  LKD  NL ++  + C  I D G   L  L  L +L    N
Sbjct: 341 SELEMIQLSGCSKLKE-ITSLKDLPNLVNITADSC-AIEDLGT--LNNLPKLQTLILSDN 396

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             +T   + A   +  L  L L+ C     G   L  L KLE L++K     + S+   +
Sbjct: 397 KDLT--NINAITDMPQLKTLALDGCGITSIG--TLDNLPKLEKLDLKENQLTSISE---I 449

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           + L  L  L +S + +T   I  LK L  L  LN+    ++   + +L+   SL Y+N++
Sbjct: 450 NDLPRLSYLDVSVNYLTT--IGELKKLPLLEWLNVSSNRLSD--VSTLTNFPSLNYINVS 505

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
              +   G  K +++ SLK      N ++D  ++H   + NL  ++  +  I + G    
Sbjct: 506 NNVIRTVG--KMTELPSLKEFYAQNNNVSDISMIH--DMPNLRKVDASNNLITNIG--TF 559

Query: 297 TGLCNLKCLELSDTQVGSSGLRH--------------------LSGLTNLESINLSFTGI 336
             L  L+ L++   ++ ++ + H                    +  L  L  ++LSF  I
Sbjct: 560 DNLPKLQNLDVHSNRITNTSVIHDLPSLETFYAQNNLITNIGTMDNLPELTYVDLSFNRI 619

Query: 337 SD----GSLRKLA------------------GLSSLKSLNLDARQITDTG----LAALTS 370
                 G L KL                   G+S L++L L    +  TG    L+AL+ 
Sbjct: 620 PSLAPIGDLPKLEILKVTDNYSYLRSLGTMDGVSKLRNLELQNNYLNYTGTEGNLSALSD 679

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           LT LT L+L      D+G  Y+ +   L +L        D+    IKD+S+L+ L   Q 
Sbjct: 680 LTNLTELNL-----RDNG--YISDISGLSTLSRLIYLNLDS--NKIKDISALSNLTTLQE 730

Query: 431 CNLTDKTLELISGLTGLVSLN 451
             L +  +E IS L+ L +LN
Sbjct: 731 LTLENNQIEDISALSDLDNLN 751


>gi|255521411|ref|ZP_05388648.1| cell wall surface anchor family protein [Listeria monocytogenes FSL
           J1-175]
          Length = 1775

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 108/386 (27%), Positives = 172/386 (44%), Gaps = 67/386 (17%)

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
           +E L+ L NLTSL+   NN      +     L+NLV L+L      +  LVNL G     
Sbjct: 172 IEGLQYLENLTSLNLSENN---ISDLAPIKDLVNLVSLNLSS----NRTLVNLSG----- 219

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
                            + GL NL+ L +S +K  +  I+ +  L  L  ++ +GC +  
Sbjct: 220 -----------------VEGLVNLQELNVSANKALED-ISQVAALPVLKEISAQGCNIKT 261

Query: 219 ACLDSLSA--LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
             LD+ +   L  L    L    L+D      +K+  LK L +  N  + + L  LKG T
Sbjct: 262 LELDNPAGAILPELETFYLQENDLTD--LTSLAKLPKLKNLYIKGNA-SLKSLATLKGAT 318

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES-INLSFTG 335
            L+ ++  +C    E L +++GL  L+ ++LS    G S L+ ++ L +L + +N++   
Sbjct: 319 KLQLIDASNC-TDLETLGDISGLSELEMIQLS----GCSKLKEITSLKDLPNLVNITADS 373

Query: 336 ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            +   L  L  L  L++L L D + +T+  + A+T +  L  L L G  IT  G   L N
Sbjct: 374 CAIEDLGTLNNLPKLQTLILSDNKDLTN--INAITDMPQLKTLALDGCGITSIGT--LDN 429

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN----------------CNLTDKTL 438
              L  L++    LT   +  I DL  L+ L++S N                 N++   L
Sbjct: 430 LPKLEKLDLKENQLTS--ISEINDLPRLSYLDVSVNYLTTIGELKKLPLLEWLNVSSNRL 487

Query: 439 ELISGLTGLVSL---NVSNSRITSAG 461
             +S LT   SL   NVSN+ I + G
Sbjct: 488 SDVSTLTNFPSLNYINVSNNVIRTVG 513



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 113/441 (25%), Positives = 184/441 (41%), Gaps = 76/441 (17%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           S L  + LSG       +  LKD  NL ++  + C  I D G   L  L  L +L    N
Sbjct: 341 SELEMIQLSGCSKLKE-ITSLKDLPNLVNITADSC-AIEDLGT--LNNLPKLQTLILSDN 396

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             +T   + A   +  L  L L+ C     G   L  L KLE L++K     + S+   +
Sbjct: 397 KDLT--NINAITDMPQLKTLALDGCGITSIG--TLDNLPKLEKLDLKENQLTSISE---I 449

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           + L  L  L +S + +T   I  LK L  L  LN+    ++   + +L+   SL Y+N++
Sbjct: 450 NDLPRLSYLDVSVNYLTT--IGELKKLPLLEWLNVSSNRLSD--VSTLTNFPSLNYINVS 505

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
              +   G  K +++ SLK      N ++D  ++H   + NL  ++  +  I + G    
Sbjct: 506 NNVIRTVG--KMTELPSLKEFYAQNNNVSDISMIH--DMPNLRKVDASNNLITNIG--TF 559

Query: 297 TGLCNLKCLELSDTQVGSSGLRH--------------------LSGLTNLESINLSFTGI 336
             L  L+ L++   ++ ++ + H                    +  L  L  ++LSF  I
Sbjct: 560 DNLPKLQNLDVHSNRITNTSVIHDLPSLETFYAQNNLITNIGTMDNLPELTYVDLSFNRI 619

Query: 337 SD----GSLRKLA------------------GLSSLKSLNLDARQITDTG----LAALTS 370
                 G L KL                   G+S L++L L    +  TG    L+AL+ 
Sbjct: 620 PSLAPIGDLPKLEILKVTDNYSYLRSLGTMDGVSKLRNLELQNNYLNYTGTEGNLSALSD 679

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           LT LT L+L      D+G  Y+ +   L +         D+    IKD+S+L+ L   Q 
Sbjct: 680 LTNLTELNL-----RDNG--YISDISGLSTQSRLIYLNLDS--NKIKDISALSNLTTLQE 730

Query: 431 CNLTDKTLELISGLTGLVSLN 451
             L +  +E IS L+ L +LN
Sbjct: 731 LTLENNQIEDISALSDLDNLN 751


>gi|254992878|ref|ZP_05275068.1| internalin proteins, peptidoglycan bound protein (LPXTG motif)
           [Listeria monocytogenes FSL J2-064]
          Length = 1775

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 108/386 (27%), Positives = 172/386 (44%), Gaps = 67/386 (17%)

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
           +E L+ L NLTSL+   NN      +     L+NLV L+L      +  LVNL G     
Sbjct: 172 IEGLQYLENLTSLNLSENN---ISDLAPIKDLVNLVSLNLSS----NRTLVNLSG----- 219

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
                            + GL NL+ L +S +K  +  I+ +  L  L  ++ +GC +  
Sbjct: 220 -----------------VEGLVNLQELNVSANKALED-ISQVAALPVLKEISAQGCNIKT 261

Query: 219 ACLDSLSA--LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
             LD+ +   L  L    L    L+D      +K+  LK L +  N  + + L  LKG T
Sbjct: 262 LELDNPAGAILPELETFYLQENDLTD--LTSLAKLPKLKNLYIKGNA-SLKSLATLKGAT 318

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES-INLSFTG 335
            L+ ++  +C    E L +++GL  L+ ++LS    G S L+ ++ L +L + +N++   
Sbjct: 319 KLQLIDASNC-TDLETLGDISGLSELEMIQLS----GCSKLKEITSLKDLPNLVNITADS 373

Query: 336 ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            +   L  L  L  L++L L D + +T+  + A+T +  L  L L G  IT  G   L N
Sbjct: 374 CAIEDLGTLNNLPKLQTLILSDNKDLTN--INAITDMPQLKTLALDGCGITSIGT--LDN 429

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN----------------CNLTDKTL 438
              L  L++    LT   +  I DL  L+ L++S N                 N++   L
Sbjct: 430 LPKLEKLDLKENQLTS--ISEINDLPRLSYLDVSVNYLTTIGELKKLPLLEWLNVSSNRL 487

Query: 439 ELISGLTGLVSL---NVSNSRITSAG 461
             +S LT   SL   NVSN+ I + G
Sbjct: 488 SDVSTLTNFPSLNYINVSNNVIRTVG 513



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 115/441 (26%), Positives = 185/441 (41%), Gaps = 76/441 (17%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           S L  + LSG       +  LKD  NL ++  + C  I D G   L  L  L +L    N
Sbjct: 341 SELEMIQLSGCSKLKE-ITSLKDLPNLVNITADSC-AIEDLGT--LNNLPKLQTLILSDN 396

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             +T   + A   +  L  L L+ C     G   L  L KLE L++K     + S+   +
Sbjct: 397 KDLT--NINAITDMPQLKTLALDGCGITSIG--TLDNLPKLEKLDLKENQLTSISE---I 449

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           + L  L  L +S + +T   I  LK L  L  LN+    ++   + +L+   SL Y+N++
Sbjct: 450 NDLPRLSYLDVSVNYLTT--IGELKKLPLLEWLNVSSNRLSD--VSTLTNFPSLNYINVS 505

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
              +   G  K +++ SLK      N I+D  ++H   + NL  ++  +  I + G    
Sbjct: 506 NNVIRTVG--KMTELPSLKEFYAQNNNISDISMIH--DMPNLRKVDASNNLITNIG--TF 559

Query: 297 TGLCNLKCLELSDTQVGSSGLRH--------------------LSGLTNLESINLSFTGI 336
             L  L+ L++   ++ ++ + H                    +  L  L  ++LSF  I
Sbjct: 560 DNLPKLQNLDVHSNRITNTSVIHDLPSLETFYAQNNLITNIGTMDNLPELTYVDLSFNRI 619

Query: 337 SD----GSLRKLA------------------GLSSLKSLNLDARQITDTG----LAALTS 370
                 G L KL                   G+S L++L L    +  TG    L+AL+ 
Sbjct: 620 PSLAPIGDLPKLEILKVTDNYSYLRSLGTMDGVSKLRNLELQNNYLNYTGTEGNLSALSD 679

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           LT LT L+L      D+G  Y+ +   L +L        D+    IKD+S+L+ L   Q 
Sbjct: 680 LTNLTELNL-----RDNG--YISDISGLSTLSRLIYLNLDS--NKIKDISALSNLTTLQE 730

Query: 431 CNLTDKTLELISGLTGLVSLN 451
             L +  +E IS L+ L +LN
Sbjct: 731 LTLENNQIEDISALSDLDNLN 751


>gi|405751552|ref|YP_006675017.1| internalin I [Listeria monocytogenes SLCC2378]
 gi|404220752|emb|CBY72115.1| internalin I (LPXTG motif) [Listeria monocytogenes SLCC2378]
          Length = 1775

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 108/386 (27%), Positives = 172/386 (44%), Gaps = 67/386 (17%)

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
           +E L+ L NLTSL+   NN      +     L+NLV L+L      +  LVNL G     
Sbjct: 172 IEGLQYLENLTSLNLSENN---ISDLAPIKDLVNLVSLNLSS----NRTLVNLSG----- 219

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
                            + GL NL+ L +S +K  +  I+ +  L  L  ++ +GC +  
Sbjct: 220 -----------------VEGLVNLQELNVSANKALED-ISQVAALPVLKEISAQGCNIKT 261

Query: 219 ACLDSLSA--LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
             LD+ +   L  L    L    L+D      +K+  LK L +  N  + + L  LKG T
Sbjct: 262 LELDNPAGAILPELETFYLQENDLTD--LTSLAKLPKLKNLYIKGNA-SLKSLATLKGAT 318

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES-INLSFTG 335
            L+ ++  +C    E L +++GL  L+ ++LS    G S L+ ++ L +L + +N++   
Sbjct: 319 KLQLIDASNC-TDLETLGDISGLSELEMIQLS----GCSKLKEITSLKDLPNLVNITADS 373

Query: 336 ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            +   L  L  L  L++L L D + +T+  + A+T +  L  L L G  IT  G   L N
Sbjct: 374 CAIEDLGTLNNLPKLQTLILSDNKDLTN--INAITDMPQLKTLALDGCGITSIGT--LDN 429

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN----------------CNLTDKTL 438
              L  L++    LT   +  I DL  L+ L++S N                 N++   L
Sbjct: 430 LPKLEKLDLKENQLTS--ISEINDLPRLSYLDVSVNYLTTIGELKKLPLLEWLNVSSNRL 487

Query: 439 ELISGLTGLVSL---NVSNSRITSAG 461
             +S LT   SL   NVSN+ I + G
Sbjct: 488 SDVSTLTNFPSLNYINVSNNVIRTVG 513



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 114/441 (25%), Positives = 185/441 (41%), Gaps = 76/441 (17%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           S L  + LSG       +  LKD  NL ++  + C  I D G   L  L  L +L    N
Sbjct: 341 SELEMIQLSGCSKLKE-ITSLKDLPNLVNITADSC-AIEDLGT--LNNLPKLQTLILSDN 396

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             +T   + A   +  L  L L+ C     G   L  L KLE L++K     + S+   +
Sbjct: 397 KDLT--NINAITDMPQLKTLALDGCGITSIG--TLDNLPKLEKLDLKENQLTSISE---I 449

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           + L  L  L +S + +T   I  LK L  L  LN+    ++   + +L+   SL Y+N++
Sbjct: 450 NDLPRLSYLDVSVNYLTT--IGELKKLPLLEWLNVSSNRLSD--VSTLTNFPSLNYINVS 505

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
              +   G  K +++ SLK      N ++D  ++H   + NL  ++  +  I + G    
Sbjct: 506 NNVIRTVG--KMTELPSLKEFYAQNNNVSDISMIH--DMPNLRKVDASNNLITNIG--TF 559

Query: 297 TGLCNLKCLELSDTQVGSSGLRH--------------------LSGLTNLESINLSFTGI 336
             L  L+ L++   ++ ++ + H                    +  L  L  ++LSF  I
Sbjct: 560 DNLPKLQNLDVHSNRITNTSVIHDLPSLETFYAQNNLITNIGTMDNLPELTYVDLSFNRI 619

Query: 337 SD----GSLRKLA------------------GLSSLKSLNLDARQITDTG----LAALTS 370
                 G L KL                   G+S L++L L    +  TG    L+AL+ 
Sbjct: 620 PSLAPIGDLPKLEILKVTDNYSYLRSLGTMDGVSKLRNLELQNNYLNYTGTEGNLSALSD 679

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           LT LT L+L      D+G  Y+ +   L +L        D+    IKD+S+L+ L   Q 
Sbjct: 680 LTNLTELNL-----RDNG--YISDISGLSTLSRLIYLNLDS--NKIKDISALSNLTTLQE 730

Query: 431 CNLTDKTLELISGLTGLVSLN 451
             L +  +E IS L+ L +LN
Sbjct: 731 LTLENNQIEDISALSDLDNLN 751


>gi|219821258|gb|ACL37750.1| internalin A [Listeria monocytogenes]
          Length = 739

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 119/389 (30%), Positives = 185/389 (47%), Gaps = 71/389 (18%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
           L+  +NL  ++F F  Q++D  +  L+ L+ L  +    NN IT   +   A L NL  L
Sbjct: 36  LEYLNNLTQINFGFN-QLTD--ITPLKDLTKLVDI-VMNNNQIT--DISPLANLTNLTGL 89

Query: 137 DL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
            L   + T I   L NL  L +LE       +  T SD+  LSGLTNL+ L    ++VTD
Sbjct: 90  TLFNNQITDIDA-LKNLTNLNRLE------LSSNTISDISALSGLTNLQQLSFG-NQVTD 141

Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
                LK L  LT   LE   +++  +  +S L                   K + + SL
Sbjct: 142 -----LKPLANLTT--LERLDISSNKVSDISVLA------------------KLTNLESL 176

Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
              N   N+I+D  +  L  LTNL+ L+L+   + D G   L  L NL  L+L++ Q+  
Sbjct: 177 IATN---NQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI-- 227

Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
           S L  LSGLT L  + L    IS+  +  LAGL++L +L L+  Q+ D  ++ +++L  L
Sbjct: 228 SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNL 283

Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
           T+L L+   I+D   + + +   L+ L      ++D  V  + +L+++  L+   N    
Sbjct: 284 TYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--- 336

Query: 435 DKTLELISGLTGLVSLNVSNSRITSAGLR 463
                 IS LT L +L    +RIT  GL 
Sbjct: 337 ------ISDLTPLANL----TRITQLGLN 355



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 121/249 (48%), Gaps = 43/249 (17%)

Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD----EGLVNLTG 298
           DG E    + +L  +N GFN++TD  +  LK LT L  + +++  I D      L NLTG
Sbjct: 34  DGLEY---LNNLTQINFGFNQLTD--ITPLKDLTKLVDIVMNNNQITDISPLANLTNLTG 88

Query: 299 LC----------------NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
           L                 NL  LELS   +  S +  LSGLTNL+   LSF G     L+
Sbjct: 89  LTLFNNQITDIDALKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVTDLK 143

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
            LA L++L+ L++ + +++D  ++ L  LT L  L     +I+D     L    NL  L 
Sbjct: 144 PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELS 199

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
           + G  L D G   +  L++LT L+L+ N       L  +SGLT L  L +  ++I++   
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 254

Query: 460 -AGLRHLNH 467
            AGL  L +
Sbjct: 255 LAGLTALTN 263


>gi|356572954|ref|XP_003554630.1| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max]
          Length = 641

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 185/377 (49%), Gaps = 38/377 (10%)

Query: 69  VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN--AITAQGMK 125
           VTD GL  +   C  L+ L   +C++ISD G++ L        L F   +   ++++ ++
Sbjct: 158 VTDIGLAKIAVGCGKLERLSLKWCLEISDLGIDLL--CKKCLDLKFLDVSYLKVSSESLR 215

Query: 126 AFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESLNIKWCNCITDSDM-KPLSGLTNL 182
           + A L+ L    +  C+ +   GL  L KG   L+++++  C+C++ S +   +SG   L
Sbjct: 216 SIASLLKLEVFIMVGCSLVDDVGLRFLEKGCPLLKAIDVSRCDCVSSSGLISVISGHGGL 275

Query: 183 KSLQISCS--KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY-LNLNRCQ 239
           + L       +++   +  L+ L++L ++ ++G  V+   L ++     L   L L++C 
Sbjct: 276 EQLDAGYCLFELSAPLVKCLENLKQLRIIRIDGVRVSDFILQTIGTNCKLLVELGLSKCV 335

Query: 240 -LSDDGCEKF-SKIGSLKVLNL---------GFNEITDECLVHLKGLTNLESLNLDSCGI 288
            +++ G  +  S  G+LK+L+L           + I D C        +L  L L+SC +
Sbjct: 336 GVTNKGIMQLVSGCGNLKILDLTCCQFISDTAISTIADSC-------PDLVCLKLESCDM 388

Query: 289 GDEGLVNLTGL-CN-LKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKL 344
             E  +   GL C+ LK L+L+D   +    LR+LS  + L  + L   T ISD  L  +
Sbjct: 389 VTENCLYQLGLNCSLLKELDLTDCSGIDDIALRYLSRCSELVRLKLGLCTNISDIGLAHI 448

Query: 345 A-GLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDL-FGARITDSGAAYLRNFKNLRS 400
           A     +  L+L    +I D GLAALTS   GLT L+L +  RITD G  Y+ +   L  
Sbjct: 449 ACNCPKMTELDLYRCVRIGDDGLAALTSGCKGLTKLNLSYCNRITDRGMEYISHLGELSD 508

Query: 401 LEICG-GGLTDAGVKHI 416
           LE+ G   +T  G+K +
Sbjct: 509 LELRGLSNITSIGIKEV 525



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 132/280 (47%), Gaps = 35/280 (12%)

Query: 79  DCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKL 136
           +C  L  L  + C+ +++ G+  L  G  NL  L       I+   +   A    +LV L
Sbjct: 322 NCKLLVELGLSKCVGVTNKGIMQLVSGCGNLKILDLTCCQFISDTAISTIADSCPDLVCL 381

Query: 137 DLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVT 193
            LE C  +    +   GL    L+ L++  C+ I D  ++ LS  + L  L++  C+ ++
Sbjct: 382 KLESCDMVTENCLYQLGLNCSLLKELDLTDCSGIDDIALRYLSRCSELVRLKLGLCTNIS 441

Query: 194 DSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNRC-QLSDDGCEK 247
           D G+A++     K+T L+L  C       D L+AL S    L  LNL+ C +++D G E 
Sbjct: 442 DIGLAHIACNCPKMTELDLYRCVRIGD--DGLAALTSGCKGLTKLNLSYCNRITDRGMEY 499

Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
            S +G          E++D   + L+GL+N+ S+ +    I  + L +L    +LK  E 
Sbjct: 500 ISHLG----------ELSD---LELRGLSNITSIGIKEVAISCKRLADL----DLKHCE- 541

Query: 308 SDTQVGSSGLRHLSGLT-NLESINLSFTGISDGSLRKLAG 346
              ++  SG   L+  + NL  IN+S+  +SD  L  L G
Sbjct: 542 ---KIDDSGFWALAFYSQNLRQINMSYCIVSDMVLCMLMG 578



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 88/188 (46%), Gaps = 13/188 (6%)

Query: 20  LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHL 77
           + +++L     C+ L  L LG    ++D  +  IA     +  +DL     + D GL  L
Sbjct: 415 IDDIALRYLSRCSELVRLKLGLCTNISDIGLAHIACNCPKMTELDLYRCVRIGDDGLAAL 474

Query: 78  KD-CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVK 135
              C  L  L+ ++C +I+D G+E++  L  L+ L  R  + IT+ G+K  A     L  
Sbjct: 475 TSGCKGLTKLNLSYCNRITDRGMEYISHLGELSDLELRGLSNITSIGIKEVAISCKRLAD 534

Query: 136 LDLERCTRI-HGGLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQ----ISC 189
           LDL+ C +I   G   L    + L  +N+ +C     SDM     + NLK LQ    +  
Sbjct: 535 LDLKHCEKIDDSGFWALAFYSQNLRQINMSYC---IVSDMVLCMLMGNLKRLQDAKLVCL 591

Query: 190 SKVTDSGI 197
           SKV+  G+
Sbjct: 592 SKVSVKGL 599



 Score = 46.2 bits (108), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 107/250 (42%), Gaps = 39/250 (15%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
           ++D  +  IA     L+ + L   D VT++ L  L  +CS L+ LD   C  I D  L +
Sbjct: 363 ISDTAISTIADSCPDLVCLKLESCDMVTENCLYQLGLNCSLLKELDLTDCSGIDDIALRY 422

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNL-KGLMKLE 158
           L   S L  L       I+  G+   A     + +LDL RC RI   GL  L  G   L 
Sbjct: 423 LSRCSELVRLKLGLCTNISDIGLAHIACNCPKMTELDLYRCVRIGDDGLAALTSGCKGLT 482

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 217
            LN+ +CN                        ++TD G+ Y+  L +L+ L L G   +T
Sbjct: 483 KLNLSYCN------------------------RITDRGMEYISHLGELSDLELRGLSNIT 518

Query: 218 AACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIG----SLKVLNLGFNEITDECLVHL 272
           +  +  ++ +   L  L+L  C+  DD    F  +     +L+ +N+ +  ++D  L  L
Sbjct: 519 SIGIKEVAISCKRLADLDLKHCEKIDDS--GFWALAFYSQNLRQINMSYCIVSDMVLCML 576

Query: 273 KGLTNLESLN 282
            G  NL+ L 
Sbjct: 577 MG--NLKRLQ 584


>gi|342181731|emb|CCC91210.1| putative leucine-rich repeat protein (LRRP) [Trypanosoma congolense
           IL3000]
          Length = 537

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 160/335 (47%), Gaps = 9/335 (2%)

Query: 104 GLSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
           GL N++ +  R    + +T + +       +LVKL +E C  I   +  L  +  LE + 
Sbjct: 6   GLPNMSRMRERHLGGSRVTDRHLCNIGVGKDLVKLYIEACENI-TDISFLADVESLEEVT 64

Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
           ++ C  +     + L  +  L++L +  + VTD+ ++ L+  + L  L +E C      +
Sbjct: 65  LEGCRNVVRGIFE-LGRMPRLQTLSLKDTVVTDASLSGLRFSRSLVKLLVESCAQLTD-V 122

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
             ++A+ +L     + C+    G  +  ++  L +L+L    +TD+CL  L    +L  L
Sbjct: 123 APVAAVKTLEEARFDGCRNVVKGVGELGRVPYLHILSLRETGVTDQCLQGLCCSRSLVEL 182

Query: 282 NLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           +L+SC  I D G   L  +  LK + L   +    G+  L  +  L+++++  T ++D +
Sbjct: 183 SLESCVHITDVG--PLHQIDTLKAINLDRCENVIKGIGELGKMPRLQTLSMRETRVTDET 240

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
           L  L    SL  + L+   ++ T ++ L+++  L  ++L G R    GA  L    +L  
Sbjct: 241 LYSLRNNYSLVEITLEC-CLSITDVSPLSTIVTLQRINLGGCRNVVKGAGPLSKLPDLHE 299

Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
           L + G  +TD+ V  + +  SL  L+LS   N+TD
Sbjct: 300 LSVRGSAITDSCVSDLSESKSLRRLDLSSCENVTD 334



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 122/498 (24%), Positives = 207/498 (41%), Gaps = 79/498 (15%)

Query: 20  LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD 79
           L EV+LE  R+       LG+ P                L ++ L  + VTD+ L  L+ 
Sbjct: 60  LEEVTLEGCRNVVRGIFELGRMP---------------RLQTLSLKDTVVTDASLSGLRF 104

Query: 80  CSNLQSLDFNFCIQISDGG-------LEHLR---------GLSNLTSLSF-----RRNNA 118
             +L  L    C Q++D         LE  R         G+  L  + +      R   
Sbjct: 105 SRSLVKLLVESCAQLTDVAPVAAVKTLEEARFDGCRNVVKGVGELGRVPYLHILSLRETG 164

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           +T Q ++      +LV+L LE C  I   +  L  +  L+++N+  C  +    +  L  
Sbjct: 165 VTDQCLQGLCCSRSLVELSLESCVHI-TDVGPLHQIDTLKAINLDRCENVIKG-IGELGK 222

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           +  L++L +  ++VTD  +  L+    L  + LE C ++   +  LS + +L  +NL  C
Sbjct: 223 MPRLQTLSMRETRVTDETLYSLRNNYSLVEITLECC-LSITDVSPLSTIVTLQRINLGGC 281

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
           +    G    SK+  L  L++  + ITD C+  L    +L  L+L SC    E + ++  
Sbjct: 282 RNVVKGAGPLSKLPDLHELSVRGSAITDSCVSDLSESKSLRRLDLSSC----ENVTDVLP 337

Query: 299 LCNLKCLELSD---------------------------TQVGSSGLRHLSGLTNLESINL 331
            C +K LE  D                           T    + LR LS   N+  +++
Sbjct: 338 CCRIKLLEEIDLSRCRNISCGVGDMAKLSLLRVLSLVGTNTSDNCLRMLSTNYNITVLDV 397

Query: 332 SFTG-ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
           SF G + D  +  +A +  L+ L  +  +    G+  L  L  L  L L  A I +    
Sbjct: 398 SFCGNLVD--MTPIASIELLEVLRANGCKGVVRGVGGLGKLRSLRELSLKEASIKNKSLD 455

Query: 391 YLRNFKNLRSLEICG-GGLTDA-GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
            L   ++L  L++     LTD   + H+K   +L +LNL+   N+T+  L+ +  +  L 
Sbjct: 456 GLGESQSLVQLDLASCERLTDVTSLSHVK---TLEILNLNGCKNVTEG-LDCMVLMQRLR 511

Query: 449 SLNVSNSRITSAGLRHLN 466
            L+V   R+ SA L+ L 
Sbjct: 512 CLHVVGVRLRSAVLKDLE 529



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 169/361 (46%), Gaps = 20/361 (5%)

Query: 69  VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           +TD G +H  D   L++++ + C  +   G+  L  +  L +LS R    +T + + +  
Sbjct: 190 ITDVGPLHQID--TLKAINLDRCENVIK-GIGELGKMPRLQTLSMRETR-VTDETLYSLR 245

Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
              +LV++ LE C  I   +  L  ++ L+ +N+  C  +      PLS L +L  L + 
Sbjct: 246 NNYSLVEITLECCLSI-TDVSPLSTIVTLQRINLGGCRNVVKG-AGPLSKLPDLHELSVR 303

Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
            S +TDS ++ L   + L  L+L  C      L     +  L  ++L+RC+    G    
Sbjct: 304 GSAITDSCVSDLSESKSLRRLDLSSCENVTDVL-PCCRIKLLEEIDLSRCRNISCGVGDM 362

Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL- 307
           +K+  L+VL+L     +D CL  L    N+  L++  CG     LV++T + +++ LE+ 
Sbjct: 363 AKLSLLRVLSLVGTNTSDNCLRMLSTNYNITVLDVSFCG----NLVDMTPIASIELLEVL 418

Query: 308 --SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTG 364
             +  +    G+  L  L +L  ++L    I + SL  L    SL  L+L +  ++TD  
Sbjct: 419 RANGCKGVVRGVGGLGKLRSLRELSLKEASIKNKSLDGLGESQSLVQLDLASCERLTD-- 476

Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
           + +L+ +  L  L+L G +    G   +   + LR L + G  L  A    +KDL SL +
Sbjct: 477 VTSLSHVKTLEILNLNGCKNVTEGLDCMVLMQRLRCLHVVGVRLRSA---VLKDLESLNV 533

Query: 425 L 425
            
Sbjct: 534 F 534


>gi|325108768|ref|YP_004269836.1| hypothetical protein Plabr_2212 [Planctomyces brasiliensis DSM
           5305]
 gi|324969036|gb|ADY59814.1| hypothetical protein Plabr_2212 [Planctomyces brasiliensis DSM
           5305]
          Length = 268

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 64/113 (56%)

Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
             +L   EI+D+ +  +  LT +  +NL    I D GL +L+GL +L  L L  T +  +
Sbjct: 49  TFHLAEGEISDKSIQPVSELTQVYLVNLRGTAITDAGLAHLSGLDSLSRLHLEKTGITDA 108

Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
           GL+HL+GL  LE +NL  T ISD  L++LA L  LK L +   Q+T  G+  L
Sbjct: 109 GLKHLTGLNKLEYLNLYDTKISDAGLQQLAALKGLKKLYVWQTQVTWDGVKKL 161



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 15/142 (10%)

Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
              L++ ++    ++ +S LT +  +NL  T I+D  L  L+GL SL  L+L+   ITD 
Sbjct: 49  TFHLAEGEISDKSIQPVSELTQVYLVNLRGTAITDAGLAHLSGLDSLSRLHLEKTGITDA 108

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
           GL  LT L  L +L+L+  +I+D+G   L   K L+ L +    +T  GVK +++     
Sbjct: 109 GLKHLTGLNKLEYLNLYDTKISDAGLQQLAALKGLKKLYVWQTQVTWDGVKKLQE----- 163

Query: 424 LLNLSQNCNLTDKTLELISGLT 445
                Q   LT     +ISGL+
Sbjct: 164 -----QRPELT-----IISGLS 175



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 64/115 (55%)

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
           + +L    I D+ +  ++ L  +  + L  T +  +GL HLSGL +L  ++L  TGI+D 
Sbjct: 49  TFHLAEGEISDKSIQPVSELTQVYLVNLRGTAITDAGLAHLSGLDSLSRLHLEKTGITDA 108

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            L+ L GL+ L+ LNL   +I+D GL  L +L GL  L ++  ++T  G   L+ 
Sbjct: 109 GLKHLTGLNKLEYLNLYDTKISDAGLQQLAALKGLKKLYVWQTQVTWDGVKKLQE 163



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 59/98 (60%)

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           I+D  ++P+S LT +  + +  + +TD+G+A+L GL  L+ L+LE   +T A L  L+ L
Sbjct: 57  ISDKSIQPVSELTQVYLVNLRGTAITDAGLAHLSGLDSLSRLHLEKTGITDAGLKHLTGL 116

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
             L YLNL   ++SD G ++ + +  LK L +   ++T
Sbjct: 117 NKLEYLNLYDTKISDAGLQQLAALKGLKKLYVWQTQVT 154



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 29/164 (17%)

Query: 310 TQVGSSGLRHLSGLTNLESINLSFT----GISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
           ++V ++G R +    N + + ++F      ISD S++ ++ L+ +  +NL    ITD GL
Sbjct: 27  SKVEANGGRVMKLAQNDDRLEVTFHLAEGEISDKSIQPVSELTQVYLVNLRGTAITDAGL 86

Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
           A L+ L  L+ L L                           G+TDAG+KH+  L+ L  L
Sbjct: 87  AHLSGLDSLSRLHLEKT------------------------GITDAGLKHLTGLNKLEYL 122

Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLNHAR 469
           NL  +  ++D  L+ ++ L GL  L V  +++T  G++ L   R
Sbjct: 123 NLY-DTKISDAGLQQLAALKGLKKLYVWQTQVTWDGVKKLQEQR 165



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 60/137 (43%), Gaps = 24/137 (17%)

Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
           +  ++  +++D  I  +  L ++ L+NL G  +T A L  LS L SL  L+L +      
Sbjct: 49  TFHLAEGEISDKSIQPVSELTQVYLVNLRGTAITDAGLAHLSGLDSLSRLHLEKTG---- 104

Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
                               ITD  L HL GL  LE LNL    I D GL  L  L  LK
Sbjct: 105 --------------------ITDAGLKHLTGLNKLEYLNLYDTKISDAGLQQLAALKGLK 144

Query: 304 CLELSDTQVGSSGLRHL 320
            L +  TQV   G++ L
Sbjct: 145 KLYVWQTQVTWDGVKKL 161



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 12/103 (11%)

Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
           LVNL+G              ITD+ +  LSGL +L  L +  + +TD+G+ +L GL KL 
Sbjct: 73  LVNLRG------------TAITDAGLAHLSGLDSLSRLHLEKTGITDAGLKHLTGLNKLE 120

Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
            LNL    ++ A L  L+AL  L  L + + Q++ DG +K  +
Sbjct: 121 YLNLYDTKISDAGLQQLAALKGLKKLYVWQTQVTWDGVKKLQE 163



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 81/154 (52%), Gaps = 12/154 (7%)

Query: 51  VIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI---QISDGGLEHLRGLSN 107
           ++ +Q +++  V+ +G  V       +K   N   L+  F +   +ISD  ++ +  L+ 
Sbjct: 18  LLPAQQAAVSKVEANGGRV-------MKLAQNDDRLEVTFHLAEGEISDKSIQPVSELTQ 70

Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
           +  ++ R   AIT  G+   +GL +L +L LE+      GL +L GL KLE LN+ +   
Sbjct: 71  VYLVNLR-GTAITDAGLAHLSGLDSLSRLHLEKTGITDAGLKHLTGLNKLEYLNL-YDTK 128

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
           I+D+ ++ L+ L  LK L +  ++VT  G+  L+
Sbjct: 129 ISDAGLQQLAALKGLKKLYVWQTQVTWDGVKKLQ 162


>gi|290979531|ref|XP_002672487.1| leucine-rich repeat domain protein [Naegleria gruberi]
 gi|284086064|gb|EFC39743.1| leucine-rich repeat domain protein [Naegleria gruberi]
          Length = 612

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 122/247 (49%), Gaps = 16/247 (6%)

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
           +  S   +L  LN+N  ++ +      SK+  L  LN+G N+IT     HLK L NL +L
Sbjct: 349 NDFSMFKNLTELNVNETKIGNKVLLAISKMTQLTSLNIGKNDITKNVFKHLKKLDNLTAL 408

Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGS 340
           +L+ CG+ D  +  L  L  +  L L +  +    L+ L S L NL  +N    G    S
Sbjct: 409 DLEDCGVKD--ITPLAKLTKITKLNLKNNYLKGEWLQKLVSYLPNLRKLNSE--GNELTS 464

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD---LFGARITDSGAAYL--RNF 395
           L  L+ L++++ L L + + +D     L  L  L +LD   +    I + GA  L    F
Sbjct: 465 LAPLSLLTNIQKLKLKSLKFSDIKEMQLQHLLKLEYLDKLSITSMDIGEEGAKILGRGRF 524

Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG--LTGLVSLNVS 453
           K+L+ L IC   L D  +  I   +SL  L+L +N NLT+K + +IS   L  +  +NVS
Sbjct: 525 KHLK-LNIC--ELHDRALPFILTNTSLRTLDLQKN-NLTEKGVNIISKSYLPFMQKVNVS 580

Query: 454 NSRITSA 460
            ++  ++
Sbjct: 581 ENKYYAS 587



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 9/194 (4%)

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           +S +T L SL I  + +T +   +LK L  LT L+LE C V    +  L+ L  +  LNL
Sbjct: 375 ISKMTQLTSLNIGKNDITKNVFKHLKKLDNLTALDLEDCGVKD--ITPLAKLTKITKLNL 432

Query: 236 NRCQLSDDGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
               L  +  +K  S + +L+ LN   NE+T   L  L  LTN++ L L S    D   +
Sbjct: 433 KNNYLKGEWLQKLVSYLPNLRKLNSEGNELT--SLAPLSLLTNIQKLKLKSLKFSDIKEM 490

Query: 295 NLTGLCNLKCLE---LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
            L  L  L+ L+   ++   +G  G + L G    + + L+   + D +L  +   +SL+
Sbjct: 491 QLQHLLKLEYLDKLSITSMDIGEEGAKIL-GRGRFKHLKLNICELHDRALPFILTNTSLR 549

Query: 352 SLNLDARQITDTGL 365
           +L+L    +T+ G+
Sbjct: 550 TLDLQKNNLTEKGV 563



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 17/237 (7%)

Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL--- 259
            + LT LN+    +    L ++S +  L  LN+ +  ++ +  +   K+ +L  L+L   
Sbjct: 354 FKNLTELNVNETKIGNKVLLAISKMTQLTSLNIGKNDITKNVFKHLKKLDNLTALDLEDC 413

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGSSGLR 318
           G  +IT      L  LT +  LNL +  +  E L  L   L NL+ L     ++ S  L 
Sbjct: 414 GVKDITP-----LAKLTKITKLNLKNNYLKGEWLQKLVSYLPNLRKLNSEGNELTS--LA 466

Query: 319 HLSGLTNLESI---NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
            LS LTN++ +   +L F+ I +  L+ L  L  L  L++ +  I + G A +       
Sbjct: 467 PLSLLTNIQKLKLKSLKFSDIKEMQLQHLLKLEYLDKLSITSMDIGEEG-AKILGRGRFK 525

Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD--LSSLTLLNLSQN 430
           HL L    + D    ++    +LR+L++    LT+ GV  I    L  +  +N+S+N
Sbjct: 526 HLKLNICELHDRALPFILTNTSLRTLDLQKNNLTEKGVNIISKSYLPFMQKVNVSEN 582



 Score = 40.0 bits (92), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 8/124 (6%)

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
           G+    +   +L  LN++  +I +  L A++ +T LT L++    IT +   +L+   NL
Sbjct: 346 GNRNDFSMFKNLTELNVNETKIGNKVLLAISKMTQLTSLNIGKNDITKNVFKHLKKLDNL 405

Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTL---LNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
            +L+     L D GVK I  L+ LT    LNL  N    +   +L+S L  L  LN   +
Sbjct: 406 TALD-----LEDCGVKDITPLAKLTKITKLNLKNNYLKGEWLQKLVSYLPNLRKLNSEGN 460

Query: 456 RITS 459
            +TS
Sbjct: 461 ELTS 464



 Score = 39.3 bits (90), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 98/221 (44%), Gaps = 42/221 (19%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S+ + L S+++  +D+T +   HLK   NL +LD      + D G++ +  L+ LT ++ 
Sbjct: 376 SKMTQLTSLNIGKNDITKNVFKHLKKLDNLTALD------LEDCGVKDITPLAKLTKITK 429

Query: 114 --RRNNAITAQGM-KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
              +NN +  + + K  + L NL KL+ E                          N +T 
Sbjct: 430 LNLKNNYLKGEWLQKLVSYLPNLRKLNSE-------------------------GNELT- 463

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA---- 226
             + PLS LTN++ L++   K +D     L+ L KL    L+   +T+  +    A    
Sbjct: 464 -SLAPLSLLTNIQKLKLKSLKFSDIKEMQLQHLLKLEY--LDKLSITSMDIGEEGAKILG 520

Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
            G   +L LN C+L D          SL+ L+L  N +T++
Sbjct: 521 RGRFKHLKLNICELHDRALPFILTNTSLRTLDLQKNNLTEK 561


>gi|307107597|gb|EFN55839.1| hypothetical protein CHLNCDRAFT_145384 [Chlorella variabilis]
          Length = 582

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 166/354 (46%), Gaps = 50/354 (14%)

Query: 157 LESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
           LE  ++  C+ + DS ++ L+ G   L  L ++ C   T++G+ +L  L   TLL    C
Sbjct: 182 LEEADLSMCSQLGDSALEQLAAGCPGLTKLDLTGCELYTEAGLRHLARLPLRTLLMSACC 241

Query: 215 PVTAACLDSLSALGSLFYLNLNRC--------QLSDDGCEKFSKI-GSLKVLNLGFN--- 262
            +T  CL +++       + L RC         ++D+G    +++ GSL  L++G++   
Sbjct: 242 QLTDGCLAAVAE-----GMTLLRCLGLFEAGEGVADEGLASLARLSGSLTALDMGYSCWS 296

Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLELSDTQ-VGSSGLRH 319
              D        L+NL+ LN+  C G  D  +  +   C  L  L++S++Q + ++G+R 
Sbjct: 297 HTADGLAAIFPKLSNLQMLNIGGCEGTTDAVVGAVAQHCRQLTMLDISESQRMTAAGVRQ 356

Query: 320 LSGLTNLESINL-----------------------SFTG-ISDGSLRKLAGLSSLKS-LN 354
           L+ L  L  +NL                       SF G ++D +L   A L  L S + 
Sbjct: 357 LAQLPCLLELNLGWNIRLRDESLEALPPSITKLDLSFCGELTDRALAHAARLPRLASCIV 416

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI--CGGGLTDAG 412
               +++D GL AL     L HLDL  + +T +G A+LR  + L SL +  C   +    
Sbjct: 417 RKCNRLSDEGLRALGRCASLEHLDLSYSSVTAAGLAHLRPLRRLSSLVLVDCLRAVHPPC 476

Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV-SNSRITSAGLRHL 465
           +  + +L +L  L+ S N  L D  L+ +S  + L +L++ S  ++T  GL  L
Sbjct: 477 MMLLTELPALRALDASNNKRLDDGCLQALSHASQLTALSLNSCGKVTERGLMAL 530



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 161/375 (42%), Gaps = 65/375 (17%)

Query: 44  VNDKWMDVIASQGSSLLSVDLSGSDV-TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
           + D  ++ +A+    L  +DL+G ++ T++GL HL     L++L  + C Q++DG L  +
Sbjct: 193 LGDSALEQLAAGCPGLTKLDLTGCELYTEAGLRHLARLP-LRTLLMSACCQLTDGCLAAV 251

Query: 103 -RGLSNLTSLS-FRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIH---GGLVNLKGLMK 156
             G++ L  L  F     +  +G+ + A L  +L  LD+      H   G       L  
Sbjct: 252 AEGMTLLRCLGLFEAGEGVADEGLASLARLSGSLTALDMGYSCWSHTADGLAAIFPKLSN 311

Query: 157 LESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNL--- 211
           L+ LNI  C   TD+ +  ++     L  L IS S ++T +G+  L  L  L  LNL   
Sbjct: 312 LQMLNIGGCEGTTDAVVGAVAQHCRQLTMLDISESQRMTAAGVRQLAQLPCLLELNLGWN 371

Query: 212 --------EGCPVTAACLD----------------SLSALGSLFYLNLNRCQLSDDGCEK 247
                   E  P +   LD                 L  L S      NR  LSD+G   
Sbjct: 372 IRLRDESLEALPPSITKLDLSFCGELTDRALAHAARLPRLASCIVRKCNR--LSDEGLRA 429

Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC--GIGDEGLVNLTGLCNLKCL 305
             +  SL+ L+L ++ +T   L HL+ L  L SL L  C   +    ++ LT L  L+ L
Sbjct: 430 LGRCASLEHLDLSYSSVTAAGLAHLRPLRRLSSLVLVDCLRAVHPPCMMLLTELPALRAL 489

Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTG 364
           + S+ +                        + DG L+ L+  S L +L+L++  ++T+ G
Sbjct: 490 DASNNKR-----------------------LDDGCLQALSHASQLTALSLNSCGKVTERG 526

Query: 365 LAALTSLTGLTHLDL 379
           L AL     L HL +
Sbjct: 527 LMALVRCPSLRHLSV 541



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 107/234 (45%), Gaps = 27/234 (11%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGL----------------- 74
           LQ L +G   G  D  +  +A     L  +D+S S  +T +G+                 
Sbjct: 312 LQMLNIGGCEGTTDAVVGAVAQHCRQLTMLDISESQRMTAAGVRQLAQLPCLLELNLGWN 371

Query: 75  IHLKDCS------NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
           I L+D S      ++  LD +FC +++D  L H   L  L S   R+ N ++ +G++A  
Sbjct: 372 IRLRDESLEALPPSITKLDLSFCGELTDRALAHAARLPRLASCIVRKCNRLSDEGLRALG 431

Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC-NCITDSDMKPLSGLTNLKSLQI 187
              +L  LDL   +    GL +L+ L +L SL +  C   +    M  L+ L  L++L  
Sbjct: 432 RCASLEHLDLSYSSVTAAGLAHLRPLRRLSSLVLVDCLRAVHPPCMMLLTELPALRALDA 491

Query: 188 SCSKVTDSG-IAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ 239
           S +K  D G +  L    +LT L+L  C  VT   L +L    SL +L+++RC 
Sbjct: 492 SNNKRLDDGCLQALSHASQLTALSLNSCGKVTERGLMALVRCPSLRHLSVDRCP 545



 Score = 42.0 bits (97), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 26/117 (22%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ----------------------- 93
           +SL  +DLS S VT +GL HL+    L SL    C++                       
Sbjct: 434 ASLEHLDLSYSSVTAAGLAHLRPLRRLSSLVLVDCLRAVHPPCMMLLTELPALRALDASN 493

Query: 94  ---ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
              + DG L+ L   S LT+LS      +T +G+ A     +L  L ++RC ++ GG
Sbjct: 494 NKRLDDGCLQALSHASQLTALSLNSCGKVTERGLMALVRCPSLRHLSVDRCPQLGGG 550


>gi|290983094|ref|XP_002674264.1| predicted protein [Naegleria gruberi]
 gi|284087853|gb|EFC41520.1| predicted protein [Naegleria gruberi]
          Length = 328

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 120/268 (44%), Gaps = 5/268 (1%)

Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
           C  ++   M  +     L SL  S +K+ +     L+ L  +T L ++     +   + L
Sbjct: 44  CALVSTQWMNVIRERVKLLSLTCSNAKLWNFQTRKLEFLPNITTLTVKRTVKYSFYYEPL 103

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKI----GSLKVLNLGFNEITDECLVHLKGLTNLES 280
             +  L  LN+N       G  +  +I      L  LN+G N I D  +  +  +  L S
Sbjct: 104 KTMNQLTSLNINGHFFCKHGIPQLWRIIDEFKQLTNLNIGNNIIGDIGVARISEMKQLTS 163

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS-DG 339
           LN+ +     EG+ +++GL  L  L + + ++GS G+  + G+  L S+N++   I  +G
Sbjct: 164 LNVCNNDFSQEGVKSISGLNQLTQLNIVNNRIGSEGVNLICGMVQLTSLNIATNYIGFEG 223

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
           +      +  L  L++    I   G   ++ +  LT L++    I   GA Y+   K L 
Sbjct: 224 AKLISTRMKQLTILDIYNNNIGQEGAEFISKMNQLTKLNIGKNNIGQQGAKYISEMKQLT 283

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNL 427
           +L I    +   G K+I+++  LT L+L
Sbjct: 284 TLNISRSHIGRKGEKYIREMRHLTFLDL 311



 Score = 46.2 bits (108), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 5/125 (4%)

Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR----NFKN 397
           RKL  L ++ +L +            L ++  LT L++ G      G   L      FK 
Sbjct: 77  RKLEFLPNITTLTVKRTVKYSFYYEPLKTMNQLTSLNINGHFFCKHGIPQLWRIIDEFKQ 136

Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
           L +L I    + D GV  I ++  LT LN+  N + + + ++ ISGL  L  LN+ N+RI
Sbjct: 137 LTNLNIGNNIIGDIGVARISEMKQLTSLNVCNN-DFSQEGVKSISGLNQLTQLNIVNNRI 195

Query: 458 TSAGL 462
            S G+
Sbjct: 196 GSEGV 200



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 5/169 (2%)

Query: 94  ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK- 152
           I D G+  +  +  LTSL+   NN  + +G+K+ +GL  L +L++    RI    VNL  
Sbjct: 147 IGDIGVARISEMKQLTSLNVC-NNDFSQEGVKSISGLNQLTQLNIVN-NRIGSEGVNLIC 204

Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
           G+++L SLNI   N I     K +S  +  L  L I  + +   G  ++  + +LT LN+
Sbjct: 205 GMVQLTSLNIA-TNYIGFEGAKLISTRMKQLTILDIYNNNIGQEGAEFISKMNQLTKLNI 263

Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
               +       +S +  L  LN++R  +   G +   ++  L  L+LG
Sbjct: 264 GKNNIGQQGAKYISEMKQLTTLNISRSHIGRKGEKYIREMRHLTFLDLG 312


>gi|301088808|ref|XP_002894796.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262108394|gb|EEY66446.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 825

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 126/468 (26%), Positives = 199/468 (42%), Gaps = 92/468 (19%)

Query: 34  QDLCLGQYPGVNDKWMDVIASQGSS-----LLSVDLSGSDVTDSGLIHLKDCSNLQSLDF 88
           Q++ L  +  V+++W+  IAS  ++       ++ L+G+ +TDSG++HL    +L SLD 
Sbjct: 34  QEVDLRNFTCVSNEWLFAIASHPAASGSGTFRTLILAGTSITDSGIVHLSKLKSLTSLDV 93

Query: 89  NFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
           + C  ++D GL  + R LS+L +L        ++      A L N+ K     C R+H  
Sbjct: 94  SGCHALTDAGLNTIRRQLSSLQTLHLDECYHFSS------AVLCNVWK----DCKRLH-- 141

Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPL-----SGLTNLKSLQI-SCSKVTDSGIAYLK 201
                      SL+I+ C  +TD+ ++ L     S   NL+SL    C  +T SGI+YL 
Sbjct: 142 -----------SLSIRGCPGVTDAFLQCLATTKRSSEANLRSLDARQCKHLTSSGISYLA 190

Query: 202 ------------------GLQKLTLLNLEGCP---------VTAACLD--SLSAL----- 227
                             G+  +     E  P         ++  C+D  ++S +     
Sbjct: 191 NSSLKDMKINYLAVDDCLGVDNVAFFGFETSPGLRSLSSLSLSGLCVDETAISWIVKGCG 250

Query: 228 GSLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            SL  LN+ RC+ LSD      +  I S + + L   E     L+   G+ NL SL  + 
Sbjct: 251 ASLQCLNVARCKVLSDFALLLMAPLISSPRFIKLNLQECP---LITNTGIKNLFSLEEEK 307

Query: 286 CGIGDEGLVNLTGLCNLK-CLELSDTQ---VGSSGLRHLSGLTNLESINLS-FTGISDGS 340
               DE L       NLK CL + D     +G  G        NL  +NL     +SD  
Sbjct: 308 NQDDDEILPTSLAFLNLKNCLNIGDDAMVLIGKYG-------GNLIKLNLKGLRKVSDRG 360

Query: 341 LRKLA-GLSSLKSLNLDARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLR---NF 395
           + +LA G   LK ++L  R IT      L  L   L  LD+   R  +S A +L      
Sbjct: 361 IMELAKGCPLLKKMSLSGRNITVQTFKLLGKLCRKLQVLDISRRRDLESPACFLHLVSRV 420

Query: 396 KNLRSLEICGGGLTDAGVKHIKDL-SSLTLLNLSQNCNLTDKTLELIS 442
             L  +++    + DAGV  +      L  +NLS+   +TD   E ++
Sbjct: 421 HPLLRIDLSATNVCDAGVTLLASACRQLENINLSKCAQITDFAAEALA 468


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.319    0.136    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,601,975,395
Number of Sequences: 23463169
Number of extensions: 262667713
Number of successful extensions: 850164
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5637
Number of HSP's successfully gapped in prelim test: 17583
Number of HSP's that attempted gapping in prelim test: 677386
Number of HSP's gapped (non-prelim): 95627
length of query: 469
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 323
effective length of database: 8,933,572,693
effective search space: 2885543979839
effective search space used: 2885543979839
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)