Query 012186
Match_columns 469
No_of_seqs 286 out of 3192
Neff 11.2
Searched_HMMs 46136
Date Thu Mar 28 23:57:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012186.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012186hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 4.5E-41 9.8E-46 352.2 19.7 400 55-458 138-584 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.7E-41 1E-45 352.1 19.7 407 45-458 57-488 (968)
3 KOG4194 Membrane glycoprotein 100.0 7.8E-37 1.7E-41 274.8 3.0 391 58-454 53-448 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.2E-35 2.6E-40 267.1 3.4 379 47-430 68-449 (873)
5 KOG0444 Cytoskeletal regulator 99.9 6.1E-30 1.3E-34 232.7 -4.0 365 57-433 7-375 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 1.5E-29 3.2E-34 230.3 -4.6 367 79-456 5-373 (1255)
7 KOG0618 Serine/threonine phosp 99.9 2.3E-27 5E-32 225.0 -4.2 379 58-456 46-487 (1081)
8 KOG0472 Leucine-rich repeat pr 99.9 2.4E-27 5.2E-32 204.7 -8.4 385 57-458 91-541 (565)
9 KOG0618 Serine/threonine phosp 99.9 6.4E-26 1.4E-30 215.3 -2.9 386 59-465 23-472 (1081)
10 PLN03210 Resistant to P. syrin 99.9 2E-22 4.3E-27 212.0 16.6 362 57-435 532-908 (1153)
11 KOG0472 Leucine-rich repeat pr 99.9 2.2E-26 4.8E-31 198.8 -11.2 386 56-458 67-518 (565)
12 PLN03210 Resistant to P. syrin 99.9 8.2E-22 1.8E-26 207.4 16.9 342 98-456 550-904 (1153)
13 cd00116 LRR_RI Leucine-rich re 99.8 8E-19 1.7E-23 161.3 24.0 209 248-457 77-319 (319)
14 cd00116 LRR_RI Leucine-rich re 99.8 6.5E-19 1.4E-23 161.9 22.7 246 222-468 17-301 (319)
15 KOG4237 Extracellular matrix p 99.8 1.2E-21 2.7E-26 169.3 -3.8 393 54-455 64-498 (498)
16 KOG4237 Extracellular matrix p 99.8 5.6E-21 1.2E-25 165.2 -1.2 130 181-310 68-198 (498)
17 PRK15387 E3 ubiquitin-protein 99.7 3.1E-16 6.7E-21 154.0 12.0 266 131-442 201-466 (788)
18 PRK15387 E3 ubiquitin-protein 99.7 1.3E-15 2.8E-20 149.7 14.4 264 107-416 202-465 (788)
19 PRK15370 E3 ubiquitin-protein 99.6 7E-15 1.5E-19 145.4 11.3 244 156-430 179-425 (754)
20 KOG1909 Ran GTPase-activating 99.6 5.9E-14 1.3E-18 120.4 13.1 257 197-465 23-320 (382)
21 KOG1909 Ran GTPase-activating 99.5 1.1E-13 2.4E-18 118.8 13.6 236 173-408 23-310 (382)
22 PRK15370 E3 ubiquitin-protein 99.5 1.5E-13 3.2E-18 136.2 12.7 205 181-409 221-428 (754)
23 KOG4658 Apoptotic ATPase [Sign 99.5 1.5E-15 3.2E-20 152.6 -2.6 208 2-214 451-678 (889)
24 KOG4341 F-box protein containi 99.5 2.2E-13 4.8E-18 119.7 8.7 359 1-379 74-459 (483)
25 KOG4341 F-box protein containi 99.4 3.5E-13 7.7E-18 118.4 5.1 301 33-333 140-461 (483)
26 KOG0617 Ras suppressor protein 99.3 2.3E-14 5E-19 110.3 -6.3 157 79-242 31-187 (264)
27 KOG2120 SCF ubiquitin ligase, 99.3 3.6E-12 7.8E-17 107.2 5.8 263 2-286 101-373 (419)
28 KOG3207 Beta-tubulin folding c 99.3 8.9E-13 1.9E-17 116.5 0.8 212 249-460 118-341 (505)
29 KOG0617 Ras suppressor protein 99.3 2.1E-14 4.6E-19 110.5 -8.5 158 275-438 32-190 (264)
30 KOG4658 Apoptotic ATPase [Sign 99.2 6.2E-12 1.3E-16 126.8 2.5 243 55-304 543-798 (889)
31 KOG3207 Beta-tubulin folding c 99.2 2.1E-11 4.5E-16 108.1 3.6 135 130-265 196-339 (505)
32 PF14580 LRR_9: Leucine-rich r 99.1 4E-11 8.6E-16 96.7 3.6 126 323-452 18-147 (175)
33 KOG2120 SCF ubiquitin ligase, 99.1 6.6E-11 1.4E-15 99.7 4.4 206 49-256 177-391 (419)
34 KOG1259 Nischarin, modulator o 98.9 4.3E-10 9.2E-15 95.1 2.1 126 205-336 285-411 (490)
35 COG5238 RNA1 Ran GTPase-activa 98.9 1.5E-08 3.3E-13 84.7 10.5 251 199-460 25-318 (388)
36 PF14580 LRR_9: Leucine-rich r 98.9 4.9E-10 1.1E-14 90.4 1.2 110 346-460 17-128 (175)
37 KOG1259 Nischarin, modulator o 98.8 1.4E-09 2.9E-14 92.1 1.6 131 178-314 282-413 (490)
38 KOG3665 ZYG-1-like serine/thre 98.7 3.9E-08 8.5E-13 97.2 9.8 141 324-466 122-271 (699)
39 COG5238 RNA1 Ran GTPase-activa 98.7 2.8E-07 6.1E-12 77.3 12.3 182 249-430 27-252 (388)
40 PLN03150 hypothetical protein; 98.7 1.8E-08 3.9E-13 99.9 6.1 105 326-430 420-525 (623)
41 PF13855 LRR_8: Leucine rich r 98.7 1.5E-09 3.2E-14 71.9 -1.9 59 372-430 1-59 (61)
42 PLN03150 hypothetical protein; 98.7 3.9E-08 8.6E-13 97.5 7.0 107 349-456 419-526 (623)
43 PF13855 LRR_8: Leucine rich r 98.6 3.6E-09 7.8E-14 70.1 -0.8 60 397-457 2-61 (61)
44 COG4886 Leucine-rich repeat (L 98.6 3.3E-08 7.1E-13 93.6 3.7 197 232-438 97-294 (394)
45 KOG1859 Leucine-rich repeat pr 98.6 8.7E-09 1.9E-13 97.6 -0.7 176 272-458 105-292 (1096)
46 COG4886 Leucine-rich repeat (L 98.5 7.4E-08 1.6E-12 91.2 5.0 201 207-416 96-297 (394)
47 KOG3665 ZYG-1-like serine/thre 98.5 1.5E-07 3.2E-12 93.2 5.7 137 81-219 122-265 (699)
48 KOG0532 Leucine-rich repeat (L 98.5 3.6E-09 7.7E-14 97.3 -5.7 188 233-430 80-270 (722)
49 KOG2982 Uncharacterized conser 98.4 1.5E-07 3.3E-12 79.9 3.4 202 229-431 46-260 (418)
50 KOG2982 Uncharacterized conser 98.4 2.4E-07 5.2E-12 78.7 4.4 185 104-289 69-262 (418)
51 KOG1947 Leucine rich repeat pr 98.4 9.7E-07 2.1E-11 86.3 8.3 60 251-310 242-305 (482)
52 KOG0531 Protein phosphatase 1, 98.3 2.2E-08 4.8E-13 94.9 -4.3 107 176-287 91-197 (414)
53 KOG0531 Protein phosphatase 1, 98.3 2.6E-08 5.7E-13 94.3 -4.0 244 202-459 70-319 (414)
54 KOG0532 Leucine-rich repeat (L 98.3 2.3E-08 4.9E-13 92.2 -4.5 172 59-242 77-248 (722)
55 KOG1859 Leucine-rich repeat pr 98.2 4.2E-08 9E-13 93.1 -5.4 125 278-408 166-291 (1096)
56 KOG1947 Leucine rich repeat pr 98.0 1.8E-05 3.9E-10 77.3 8.0 187 250-447 186-389 (482)
57 KOG4579 Leucine-rich repeat (L 97.9 4.7E-06 1E-10 62.5 2.2 109 325-436 28-138 (177)
58 KOG2123 Uncharacterized conser 97.8 4.6E-06 1E-10 70.4 0.5 101 347-451 18-123 (388)
59 KOG4579 Leucine-rich repeat (L 97.8 7.8E-06 1.7E-10 61.4 1.1 112 302-415 29-142 (177)
60 PF12799 LRR_4: Leucine Rich r 97.6 6.6E-05 1.4E-09 45.2 2.6 33 397-430 2-34 (44)
61 KOG3864 Uncharacterized conser 97.6 8.4E-05 1.8E-09 60.0 3.8 84 349-432 102-188 (221)
62 KOG1644 U2-associated snRNP A' 97.5 4.5E-05 9.8E-10 61.5 1.9 79 350-430 44-123 (233)
63 PF12799 LRR_4: Leucine Rich r 97.5 9.8E-05 2.1E-09 44.5 2.9 35 374-409 3-37 (44)
64 PRK15386 type III secretion pr 97.4 0.00015 3.2E-09 66.5 4.4 137 248-406 48-187 (426)
65 PF13306 LRR_5: Leucine rich r 97.4 7E-05 1.5E-09 58.4 1.6 9 371-379 80-88 (129)
66 KOG1644 U2-associated snRNP A' 97.3 0.00028 6.1E-09 57.0 4.5 105 57-164 42-149 (233)
67 KOG2739 Leucine-rich acidic nu 97.2 0.00014 3E-09 61.3 1.6 105 323-429 42-152 (260)
68 KOG3864 Uncharacterized conser 97.2 0.00024 5.1E-09 57.5 2.8 84 58-141 102-186 (221)
69 PF13306 LRR_5: Leucine rich r 97.2 0.00046 1E-08 53.7 4.1 36 151-188 8-43 (129)
70 KOG2123 Uncharacterized conser 97.2 4.8E-05 1E-09 64.4 -1.8 101 56-161 18-123 (388)
71 PRK15386 type III secretion pr 97.1 0.001 2.3E-08 61.1 5.5 137 271-430 47-187 (426)
72 KOG4308 LRR-containing protein 97.0 0.00028 6.1E-09 67.2 1.1 177 254-430 89-300 (478)
73 KOG4308 LRR-containing protein 96.9 0.00032 6.9E-09 66.9 1.3 108 323-430 203-328 (478)
74 PF13516 LRR_6: Leucine Rich r 96.7 0.00092 2E-08 34.2 1.2 24 444-467 1-24 (24)
75 KOG2739 Leucine-rich acidic nu 96.6 0.00089 1.9E-08 56.6 1.5 15 176-190 61-75 (260)
76 smart00368 LRR_RI Leucine rich 96.0 0.005 1.1E-07 32.8 1.9 24 445-468 2-25 (28)
77 smart00367 LRR_CC Leucine-rich 95.9 0.0072 1.6E-07 31.5 2.2 24 444-467 1-25 (26)
78 smart00367 LRR_CC Leucine-rich 94.4 0.05 1.1E-06 28.3 2.5 24 80-103 1-24 (26)
79 PF13516 LRR_6: Leucine Rich r 92.7 0.082 1.8E-06 26.8 1.6 14 373-386 3-16 (24)
80 PF00560 LRR_1: Leucine Rich R 91.9 0.053 1.1E-06 26.9 0.2 18 59-77 2-19 (22)
81 PF13504 LRR_7: Leucine rich r 91.7 0.071 1.5E-06 24.5 0.5 13 446-458 2-14 (17)
82 smart00370 LRR Leucine-rich re 82.4 1.2 2.6E-05 22.9 1.8 14 373-386 3-16 (26)
83 smart00369 LRR_TYP Leucine-ric 82.4 1.2 2.6E-05 22.9 1.8 14 373-386 3-16 (26)
84 KOG3763 mRNA export factor TAP 71.2 5.4 0.00012 38.4 3.9 62 346-409 216-283 (585)
85 KOG0473 Leucine-rich repeat pr 61.4 0.19 4.1E-06 42.2 -6.6 88 341-431 35-122 (326)
86 KOG3763 mRNA export factor TAP 59.2 16 0.00035 35.4 4.6 65 321-387 215-285 (585)
87 PF14162 YozD: YozD-like prote 57.7 13 0.00028 22.6 2.4 20 4-23 11-30 (57)
88 smart00364 LRR_BAC Leucine-ric 56.4 5.5 0.00012 20.6 0.6 15 445-459 2-16 (26)
89 KOG0473 Leucine-rich repeat pr 56.2 0.34 7.3E-06 40.8 -5.9 93 316-411 34-126 (326)
90 smart00365 LRR_SD22 Leucine-ri 55.0 10 0.00022 19.7 1.5 13 373-385 3-15 (26)
91 KOG1665 AFH1-interacting prote 23.6 90 0.002 26.4 3.0 14 447-460 273-286 (302)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.5e-41 Score=352.25 Aligned_cols=400 Identities=21% Similarity=0.219 Sum_probs=228.3
Q ss_pred cCCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCC
Q 012186 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (469)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (469)
..+++++|++++|.+++..|..+..+++|++|++++| .+....+..+.++++|++|++++|.. ....|..++++++|+
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQL-VGQIPRELGQMKSLK 215 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccC-cccccCChhhhhCcCCCeeeccCCCC-cCcCChHHcCcCCcc
Confidence 3567888888888777777777788888888888774 45555666777777888888877763 344566777777777
Q ss_pred EEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCC
Q 012186 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214 (469)
Q Consensus 135 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 214 (469)
+|++++|......+..+.++++|++|++.+|. +....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN-LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCce-eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence 77777765444555666777777777777643 33344555666666666666666655544455555566666666665
Q ss_pred CCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCC-----
Q 012186 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG----- 289 (469)
Q Consensus 215 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~----- 289 (469)
.+....+..+..+++|+.|++.+|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~ 374 (968)
T PLN00113 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374 (968)
T ss_pred eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence 555444555555555555555555554444444555555555555555544444444444444555544444333
Q ss_pred -------------------hHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCC-
Q 012186 290 -------------------DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS- 349 (469)
Q Consensus 290 -------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~- 349 (469)
...+..+..+++|+.|++.+|.+....+..+..+++|+.|++++|.+....+..+..+++
T Consensus 375 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 454 (968)
T PLN00113 375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL 454 (968)
T ss_pred hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCC
Confidence 233333444455555555555444444444444555555555554444333333333333
Q ss_pred ----------------------CcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCC
Q 012186 350 ----------------------LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407 (469)
Q Consensus 350 ----------------------L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 407 (469)
|+.|++++|.++...+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 455 ~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 534 (968)
T PLN00113 455 QMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534 (968)
T ss_pred cEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCc
Confidence 4444444444444434444455555555555555555555555555555555555555
Q ss_pred CCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCC
Q 012186 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458 (469)
Q Consensus 408 ~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 458 (469)
+++..|..+..+++|+.|++++| .+.+..|..+.++++|+.|++++|++.
T Consensus 535 l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 535 LSGQIPASFSEMPVLSQLDLSQN-QLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred ccccCChhHhCcccCCEEECCCC-cccccCChhHhcCcccCEEeccCCcce
Confidence 55555555555555666666655 455555555555555666666555543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.7e-41 Score=352.13 Aligned_cols=407 Identities=19% Similarity=0.186 Sum_probs=225.2
Q ss_pred CHHHHHHHHhcCCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhh-hCCCCCCEEeCCCCCcCcHHH
Q 012186 45 NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQG 123 (469)
Q Consensus 45 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~ 123 (469)
++.|..+.+....+++.|+++++.+++..+..+..+++|++|++++| .+....+..+ ..+++|++|++++|.+. ...
T Consensus 57 ~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n-~~~~~ip~~~~~~l~~L~~L~Ls~n~l~-~~~ 134 (968)
T PLN00113 57 VCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN-QLSGPIPDDIFTTSSSLRYLNLSNNNFT-GSI 134 (968)
T ss_pred CCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCC-ccCCcCChHHhccCCCCCEEECcCCccc-ccc
Confidence 45666666655567888888888887777777888888888888874 4544444443 37777777777776542 222
Q ss_pred HHHHhCCCCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCC
Q 012186 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203 (469)
Q Consensus 124 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 203 (469)
| .+.+++|++|++++|......+..+.++++|++|++++|. +....+..+.++++|++|++++|.+....+..+..+
T Consensus 135 p--~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 211 (968)
T PLN00113 135 P--RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV-LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211 (968)
T ss_pred C--ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc-ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCc
Confidence 2 1345566666666654333344455566666666665533 222344455555666666666555554445555555
Q ss_pred CCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEec
Q 012186 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283 (469)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 283 (469)
++|+.|++++|.+....+..+..+++|++|++.+|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus 212 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 291 (968)
T PLN00113 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL 291 (968)
T ss_pred CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEEC
Confidence 56666666555555444555555555666666555555444555555555555555555555444445555555555555
Q ss_pred CCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCH-
Q 012186 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD- 362 (469)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~- 362 (469)
++|.+....+..+..+++|+.|++.+|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++.
T Consensus 292 s~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~ 371 (968)
T PLN00113 292 SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE 371 (968)
T ss_pred cCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEee
Confidence 5555444444444555555555555555544444445555555555555555544444444555555555555554443
Q ss_pred -----------------------HHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcC
Q 012186 363 -----------------------TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419 (469)
Q Consensus 363 -----------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 419 (469)
..+..+..+++|+.|++++|.+++..|..+..++.|+.|++++|.+++..+..+..+
T Consensus 372 ~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 451 (968)
T PLN00113 372 IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDM 451 (968)
T ss_pred CChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccC
Confidence 334444445555555555555554444555555555555555555555444444455
Q ss_pred CCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCC
Q 012186 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458 (469)
Q Consensus 420 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 458 (469)
++|+.|++++| .+.+..|..+ ..++|+.|++++|+++
T Consensus 452 ~~L~~L~L~~n-~~~~~~p~~~-~~~~L~~L~ls~n~l~ 488 (968)
T PLN00113 452 PSLQMLSLARN-KFFGGLPDSF-GSKRLENLDLSRNQFS 488 (968)
T ss_pred CCCcEEECcCc-eeeeecCccc-ccccceEEECcCCccC
Confidence 55555555555 3333333322 2355666666666655
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=7.8e-37 Score=274.78 Aligned_cols=391 Identities=24% Similarity=0.250 Sum_probs=272.2
Q ss_pred CccEEEecCCCCChHhhHhhhcC--CCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCE
Q 012186 58 SLLSVDLSGSDVTDSGLIHLKDC--SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (469)
Q Consensus 58 ~l~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (469)
..+.|+.++..+.......+..+ +.-+.|++++ +.+....+..|.++++|+.+++..|.. ..+|.......+|+.
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~Ldlsn-Nkl~~id~~~f~nl~nLq~v~l~~N~L--t~IP~f~~~sghl~~ 129 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSN-NKLSHIDFEFFYNLPNLQEVNLNKNEL--TRIPRFGHESGHLEK 129 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccc-cccccCcHHHHhcCCcceeeeeccchh--hhcccccccccceeE
Confidence 44556666665543222222221 3455677777 467777777777777777777777754 445555555556777
Q ss_pred EecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCC
Q 012186 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (469)
Q Consensus 136 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 215 (469)
|++.+|-.......+++.++.||.|+++. +.+.......+..-.++++|++++|.++......|.++.+|.+|.++.|.
T Consensus 130 L~L~~N~I~sv~se~L~~l~alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr 208 (873)
T KOG4194|consen 130 LDLRHNLISSVTSEELSALPALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR 208 (873)
T ss_pred EeeeccccccccHHHHHhHhhhhhhhhhh-chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc
Confidence 77777654445556677777777777776 44555555566666777777777777777777777777777777777777
Q ss_pred CchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHH
Q 012186 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295 (469)
Q Consensus 216 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 295 (469)
++...+..|.++++|+.|++..|.+...-...|..+++|+.|.+..|.+.......|..+.++++|++..|++.......
T Consensus 209 ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~ 288 (873)
T KOG4194|consen 209 ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW 288 (873)
T ss_pred ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc
Confidence 77777777777777777777777766544456677777777777777776555556667777777777777766554445
Q ss_pred hhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCC
Q 012186 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375 (469)
Q Consensus 296 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 375 (469)
+.++.+|+.|+++.|.+....+..+..+++|+.|+++.|.++...+..+..+..|++|.++.|.+.......|..+.+|+
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~ 368 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLH 368 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhh
Confidence 56677777777777777776677777777788888877777777777777777777888877777777667777777788
Q ss_pred EeecCCCCCChhH---HHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccc
Q 012186 376 HLDLFGARITDSG---AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452 (469)
Q Consensus 376 ~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l 452 (469)
+|++.+|.++..+ ...+..+++|+.|++.+|++..+.-..|.+++.|++|++.+| .+..+-++.|..+ .|++|.+
T Consensus 369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCC-cceeecccccccc-hhhhhhh
Confidence 8888777665432 445666777888888888777776677777788888888887 6777777777777 7777776
Q ss_pred cC
Q 012186 453 SN 454 (469)
Q Consensus 453 ~~ 454 (469)
..
T Consensus 447 nS 448 (873)
T KOG4194|consen 447 NS 448 (873)
T ss_pred cc
Confidence 43
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-35 Score=267.14 Aligned_cols=379 Identities=22% Similarity=0.246 Sum_probs=330.7
Q ss_pred HHHHHHHhcCCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHH
Q 012186 47 KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126 (469)
Q Consensus 47 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 126 (469)
+|....+--++..+.|++++|.+....+..|..+++|+.+.+..| .++. .|....-..+|+.|+|.+|. ++......
T Consensus 68 ~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~-IP~f~~~sghl~~L~L~~N~-I~sv~se~ 144 (873)
T KOG4194|consen 68 DKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTR-IPRFGHESGHLEKLDLRHNL-ISSVTSEE 144 (873)
T ss_pred cccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhh-cccccccccceeEEeeeccc-cccccHHH
Confidence 444434445678889999999999888899999999999999883 4443 35555556689999999986 45566788
Q ss_pred HhCCCCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCC
Q 012186 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206 (469)
Q Consensus 127 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 206 (469)
++.++.||+|+++.|...+..-..+..-.++++|++.+ +.++......|..+.+|..|.++.|.++..+...|.++++|
T Consensus 145 L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 145 LSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKL 223 (873)
T ss_pred HHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheeeecccCcccccCHHHhhhcchh
Confidence 88999999999999865555557788888999999999 56777788889999999999999999999999999999999
Q ss_pred CeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCC
Q 012186 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286 (469)
Q Consensus 207 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 286 (469)
+.|++..|.+....-..|.++++|+.|.+..|++.......|..+.++++|++..|++......|+.+++.|+.|+++.|
T Consensus 224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N 303 (873)
T KOG4194|consen 224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN 303 (873)
T ss_pred hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence 99999999887765567899999999999999988877778889999999999999998777788899999999999999
Q ss_pred CCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCH---H
Q 012186 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD---T 363 (469)
Q Consensus 287 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~ 363 (469)
.+.......+..+++|+.|+++.|.+.......+..+..|++|.++.|.++......|..+.+|++|+++.|.+.. .
T Consensus 304 aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 304 AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred hhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence 9888888889999999999999999999999999999999999999999988888888899999999999988764 2
Q ss_pred HHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCC
Q 012186 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430 (469)
Q Consensus 364 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 430 (469)
....+.++++|++|.+.||++..+.-.+|..++.|+.|++.+|.+..+.+..|..+ .|++|.+..-
T Consensus 384 aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 384 AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS 449 (873)
T ss_pred chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence 34567789999999999999999988999999999999999999999999999888 8998887654
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=6.1e-30 Score=232.74 Aligned_cols=365 Identities=21% Similarity=0.206 Sum_probs=261.6
Q ss_pred CCccEEEecCCCCC-hHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCE
Q 012186 57 SSLLSVDLSGSDVT-DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (469)
Q Consensus 57 ~~l~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (469)
+=++.+|+++|.++ +..|.....+..++-|.+.. .++. ..|+.++.+.+|++|.+.+|.. ...-..++.++.||.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr-t~L~-~vPeEL~~lqkLEHLs~~HN~L--~~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR-TKLE-QVPEELSRLQKLEHLSMAHNQL--ISVHGELSDLPRLRS 82 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEech-hhhh-hChHHHHHHhhhhhhhhhhhhh--HhhhhhhccchhhHH
Confidence 45778889998887 46677788888888888875 3333 3577888888888888888875 344566778888888
Q ss_pred Eecccccccc-cccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCC
Q 012186 136 LDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214 (469)
Q Consensus 136 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 214 (469)
+.++.|..-. +.|+.+-++..|.+|+++++. +. ..+..+...+++-.|++++|++..++...+-++..|-.|++++|
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhh-hh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 8888765333 445667788888888888743 33 25667777788888888888888777777778888888888888
Q ss_pred CCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCc-hHHHHHhhCCCCCCEEecCCCCCChHHH
Q 012186 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT-DECLVHLKGLTNLESLNLDSCGIGDEGL 293 (469)
Q Consensus 215 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 293 (469)
.+... |..+..+..|+.|.+++|.+.......+..+.+|+.|.+++.+-+ ..+|..+..+.+|+.++++.|.+.. .+
T Consensus 161 rLe~L-PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vP 238 (1255)
T KOG0444|consen 161 RLEML-PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VP 238 (1255)
T ss_pred hhhhc-CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-ch
Confidence 77665 445677788888888888776666666667777777777776543 2345556667788888888777653 45
Q ss_pred HHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHH-HHHHHhcCC
Q 012186 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALTSLT 372 (469)
Q Consensus 294 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~ 372 (469)
+.+..+++|+.|++++|.++.... ..+...+|+.|+++.|+++. .|.++.+++.|+.|.+.+|+++-. .+..++.+.
T Consensus 239 ecly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI 316 (1255)
T ss_pred HHHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence 566777888888888887665332 23455677777777777765 456777777777777777776643 245666777
Q ss_pred CCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCC
Q 012186 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433 (469)
Q Consensus 373 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l 433 (469)
+|+.+..++|.+.- .|+.+..|+.|+.|.++.|.+... |+.+.-++.|+.|++..|+++
T Consensus 317 ~Levf~aanN~LEl-VPEglcRC~kL~kL~L~~NrLiTL-PeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 317 QLEVFHAANNKLEL-VPEGLCRCVKLQKLKLDHNRLITL-PEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhHHHHhhcccccc-CchhhhhhHHHHHhcccccceeec-hhhhhhcCCcceeeccCCcCc
Confidence 77777777766543 467777777777777777776655 667777777777777777654
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=1.5e-29 Score=230.28 Aligned_cols=367 Identities=21% Similarity=0.196 Sum_probs=289.7
Q ss_pred cCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCcc
Q 012186 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158 (469)
Q Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 158 (469)
-+|-+|-.+++++..-.+..|.....|.+++-|.|.+... ...|..++.+.+|+.|.+..|. +......+..++.|+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L--~~vPeEL~~lqkLEHLs~~HN~-L~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL--EQVPEELSRLQKLEHLSMAHNQ-LISVHGELSDLPRLR 81 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh--hhChHHHHHHhhhhhhhhhhhh-hHhhhhhhccchhhH
Confidence 4566777888885433366678888999999999988765 6778999999999999998864 444556678889999
Q ss_pred EEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCC
Q 012186 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238 (469)
Q Consensus 159 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (469)
.+.++.++--..-.+..+..+..|..|+++.|.+.. .+..+...+++-.|++++|++..+....+.+++.|-.|++++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 999988665555567788889999999999998874 4567888888999999999988876677788889999999999
Q ss_pred CCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCC-hHHHHHhhCCCCCCEEeccCCCCChhhH
Q 012186 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-DEGLVNLTGLCNLKCLELSDTQVGSSGL 317 (469)
Q Consensus 239 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 317 (469)
.+.. .|..+..+..|++|++++|.+.......+..+++|+.|.+++..-+ ...+..+..+.+|..++++.|.+.. .|
T Consensus 161 rLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vP 238 (1255)
T KOG0444|consen 161 RLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VP 238 (1255)
T ss_pred hhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-ch
Confidence 8765 4455677889999999999887665666677777888888876432 2234556778889999999987765 46
Q ss_pred HHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCCh-hHHHHhHcCC
Q 012186 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK 396 (469)
Q Consensus 318 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~ 396 (469)
..+-.+++|+.|++++|.+++... ......+|++|+++.|+++.. +.++..+++|++|.+.+|+++- -+|..++.+.
T Consensus 239 ecly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI 316 (1255)
T ss_pred HHHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence 677788999999999998876432 234457899999999999876 6788889999999999987763 2477788889
Q ss_pred CCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCC
Q 012186 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456 (469)
Q Consensus 397 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 456 (469)
.|+++..++|.+.-. |+.+..|+.|+.|.++.| .+.. .|+.+--++.|+.||++.|+
T Consensus 317 ~Levf~aanN~LElV-PEglcRC~kL~kL~L~~N-rLiT-LPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 317 QLEVFHAANNKLELV-PEGLCRCVKLQKLKLDHN-RLIT-LPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhHHHHhhccccccC-chhhhhhHHHHHhccccc-ceee-chhhhhhcCCcceeeccCCc
Confidence 999999998877554 888999999999999998 4433 57788888999999998875
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=2.3e-27 Score=225.00 Aligned_cols=379 Identities=24% Similarity=0.253 Sum_probs=217.9
Q ss_pred CccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEe
Q 012186 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137 (469)
Q Consensus 58 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 137 (469)
++++|+++++.+. ..|..+..+++|+.|.++.+ .+ ...+.+..++.+|+++.|.++.. ...|..+..+++|++|+
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n-~i-~~vp~s~~~~~~l~~lnL~~n~l--~~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRN-YI-RSVPSSCSNMRNLQYLNLKNNRL--QSLPASISELKNLQYLD 120 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchh-hH-hhCchhhhhhhcchhheeccchh--hcCchhHHhhhcccccc
Confidence 4777777777665 35555667777777777763 23 23346667777777777776654 55677777777777777
Q ss_pred cccccccccccccccCCCCccEEEccCC------------------CCCChhhhhcccCCCCCCEEEecccccChhhhhh
Q 012186 138 LERCTRIHGGLVNLKGLMKLESLNIKWC------------------NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199 (469)
Q Consensus 138 l~~~~~~~~~~~~l~~l~~L~~L~l~~~------------------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 199 (469)
++.|. +...|..+..+..++.+..+++ +.+......++..+.+ .+++.+|.+... .
T Consensus 121 lS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~---d 194 (1081)
T KOG0618|consen 121 LSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL---D 194 (1081)
T ss_pred cchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhh---h
Confidence 77753 2222322222222222222221 1111112222222222 355555554421 1
Q ss_pred ccCCCC--------------------CCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEc
Q 012186 200 LKGLQK--------------------LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259 (469)
Q Consensus 200 l~~l~~--------------------L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 259 (469)
+..+++ ++.|..+.|.+....+ ...-.+|++++++.+.+.... +++..+.+|+.++.
T Consensus 195 ls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~ 271 (1081)
T KOG0618|consen 195 LSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNA 271 (1081)
T ss_pred hhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhhcch-HHHHhcccceEecc
Confidence 222222 3333333333221110 111246777777777766543 66777777777777
Q ss_pred cCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHh-------------------
Q 012186 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL------------------- 320 (469)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------------------- 320 (469)
.+|.++ ..+..+....+|+.+....|.+... +.....+.+|++|++..|.+.......+
T Consensus 272 n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yi-p~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~ 349 (1081)
T KOG0618|consen 272 NHNRLV-ALPLRISRITSLVSLSAAYNELEYI-PPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST 349 (1081)
T ss_pred cchhHH-hhHHHHhhhhhHHHHHhhhhhhhhC-CCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc
Confidence 777764 3344444555666666666554322 2233445566666666665544332222
Q ss_pred ------hCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHc
Q 012186 321 ------SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394 (469)
Q Consensus 321 ------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 394 (469)
...+.|+.|.+.+|.+++.....+.++++|+.|++++|.+...+...+.+++.|++|+++||+++.. |..+..
T Consensus 350 lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L-p~tva~ 428 (1081)
T KOG0618|consen 350 LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL-PDTVAN 428 (1081)
T ss_pred cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh-hHHHHh
Confidence 1234566666777777776666677777777777777777776666777777777777777777764 466677
Q ss_pred CCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCC
Q 012186 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456 (469)
Q Consensus 395 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 456 (469)
++.|++|...+|++... | .+..++.|+.+|++.| ++...........|+|++||++||.
T Consensus 429 ~~~L~tL~ahsN~l~~f-P-e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 429 LGRLHTLRAHSNQLLSF-P-ELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhHHHhhcCCceeec-h-hhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCc
Confidence 77777777777776655 4 5666777777777777 6666554433333677777777775
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=2.4e-27 Score=204.69 Aligned_cols=385 Identities=21% Similarity=0.224 Sum_probs=260.5
Q ss_pred CCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEE
Q 012186 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (469)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (469)
..+..++.+.+.+. .+|+.+....+++.++.+.+. .. ..+..++.+..|..++..+|.+ ...|..+..+.+|..+
T Consensus 91 ~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~-~~-el~~~i~~~~~l~dl~~~~N~i--~slp~~~~~~~~l~~l 165 (565)
T KOG0472|consen 91 EALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNE-LK-ELPDSIGRLLDLEDLDATNNQI--SSLPEDMVNLSKLSKL 165 (565)
T ss_pred HHHHHhhcccchHh-hccHHHhhhhhhhhhhccccc-ee-ecCchHHHHhhhhhhhcccccc--ccCchHHHHHHHHHHh
Confidence 35677888888776 577788888888888888743 32 3466777788888888888775 4567777777788888
Q ss_pred ecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCC
Q 012186 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216 (469)
Q Consensus 137 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 216 (469)
++.++ .....++..-+++.|++|+...+ .-...|..++.+.+|..|++..|.+...+ .|.+|..|.++.++.|.+
T Consensus 166 ~~~~n-~l~~l~~~~i~m~~L~~ld~~~N--~L~tlP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i 240 (565)
T KOG0472|consen 166 DLEGN-KLKALPENHIAMKRLKHLDCNSN--LLETLPPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQI 240 (565)
T ss_pred hcccc-chhhCCHHHHHHHHHHhcccchh--hhhcCChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHH
Confidence 88775 34445544444777777777652 22346677777777877877777776432 677777777777777777
Q ss_pred chhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHH-
Q 012186 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN- 295 (469)
Q Consensus 217 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~- 295 (469)
.....+....++++..|++.+|++.+ .|+.+..+.+|+.|++++|.++. .|..++++ .|+.|.+.+|.+...-.+.
T Consensus 241 ~~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii 317 (565)
T KOG0472|consen 241 EMLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREII 317 (565)
T ss_pred HhhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHH
Confidence 66544555567777778887777754 45566677777777877777764 45566666 6777777776542211000
Q ss_pred ----------------------------------------hhCCCCCCEEeccCCCCChhhHHHhh--CCCCCcEEeccc
Q 012186 296 ----------------------------------------LTGLCNLKCLELSDTQVGSSGLRHLS--GLTNLESINLSF 333 (469)
Q Consensus 296 ----------------------------------------~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~ 333 (469)
.....+.+.|++++-+.+......|. .-.-....+++.
T Consensus 318 ~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfsk 397 (565)
T KOG0472|consen 318 SKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSK 397 (565)
T ss_pred cccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEeccc
Confidence 00112345555555554444333332 112234444444
Q ss_pred CCCC-----------------------chHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHH
Q 012186 334 TGIS-----------------------DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390 (469)
Q Consensus 334 ~~~~-----------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 390 (469)
|++. +..+..+..+++|..|++++|-+... |..++.+..|+.++++.|++.. .|.
T Consensus 398 NqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~L-P~e~~~lv~Lq~LnlS~NrFr~-lP~ 475 (565)
T KOG0472|consen 398 NQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDL-PEEMGSLVRLQTLNLSFNRFRM-LPE 475 (565)
T ss_pred chHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhc-chhhhhhhhhheeccccccccc-chH
Confidence 4332 22344556778888888888776665 4445566778889998887665 466
Q ss_pred HhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCC
Q 012186 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458 (469)
Q Consensus 391 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 458 (469)
.+..+..++.+-.++|++....+..+.++.+|..|++.+| .+.. +|..+++|.+|++|++++|+|.
T Consensus 476 ~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nN-dlq~-IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 476 CLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNN-DLQQ-IPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCC-chhh-CChhhccccceeEEEecCCccC
Confidence 6666677777777888888888888899999999999999 5554 5567899999999999999987
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=6.4e-26 Score=215.34 Aligned_cols=386 Identities=22% Similarity=0.248 Sum_probs=289.3
Q ss_pred ccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEec
Q 012186 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138 (469)
Q Consensus 59 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 138 (469)
+..|+++.|-+-....+...++-+|++|+++++ .+.+ .+..+..+.+|+.|.++.|.+ ...|....++.+|+++.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn-~~~~-fp~~it~l~~L~~ln~s~n~i--~~vp~s~~~~~~l~~lnL 98 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNN-QISS-FPIQITLLSHLRQLNLSRNYI--RSVPSSCSNMRNLQYLNL 98 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeecccc-cccc-CCchhhhHHHHhhcccchhhH--hhCchhhhhhhcchhhee
Confidence 677788876554333455567777999999984 4444 477788899999999999976 667788999999999999
Q ss_pred ccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCC-------------------CCCEEEecccccChhhhhh
Q 012186 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT-------------------NLKSLQISCSKVTDSGIAY 199 (469)
Q Consensus 139 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-------------------~L~~L~l~~~~~~~~~~~~ 199 (469)
.++ ..+..|..+..+++|+.|+++++.... .+..+..+. .++.+++..+.+.......
T Consensus 99 ~~n-~l~~lP~~~~~lknl~~LdlS~N~f~~--~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~ 175 (1081)
T KOG0618|consen 99 KNN-RLQSLPASISELKNLQYLDLSFNHFGP--IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLID 175 (1081)
T ss_pred ccc-hhhcCchhHHhhhcccccccchhccCC--CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcc
Confidence 885 678888899999999999999865432 112222222 2445555555554444444
Q ss_pred ccCCCCCCeeeccCCCCchhhHHhhhcC--------------------CCCcEEECCCCCCChhHHHHhhcCCCccEEEc
Q 012186 200 LKGLQKLTLLNLEGCPVTAACLDSLSAL--------------------GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259 (469)
Q Consensus 200 l~~l~~L~~L~l~~~~~~~~~~~~~~~~--------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 259 (469)
+..+.+ .|++..|.+... .+..+ ++++.|....|.+.. ...-....+|+.+++
T Consensus 176 i~~l~~--~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~--~~~~p~p~nl~~~di 248 (1081)
T KOG0618|consen 176 IYNLTH--QLDLRYNEMEVL---DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTT--LDVHPVPLNLQYLDI 248 (1081)
T ss_pred hhhhhe--eeecccchhhhh---hhhhccchhhhhhhhcccceEEecCcchheeeeccCccee--eccccccccceeeec
Confidence 455554 577877766522 12222 344444444444331 111234578999999
Q ss_pred cCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCch
Q 012186 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339 (469)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 339 (469)
+++.+.. .|.|+..+.+|+.+...+|.+.. .+..+....+|+.+.+..|.+.... ........|+.|++..|.+...
T Consensus 249 s~n~l~~-lp~wi~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~yip-~~le~~~sL~tLdL~~N~L~~l 325 (1081)
T KOG0618|consen 249 SHNNLSN-LPEWIGACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELEYIP-PFLEGLKSLRTLDLQSNNLPSL 325 (1081)
T ss_pred chhhhhc-chHHHHhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhhhCC-Ccccccceeeeeeehhcccccc
Confidence 9999885 45999999999999999998854 4556667889999999999777643 3456789999999999877654
Q ss_pred HHHhhh-------------------------CCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHc
Q 012186 340 SLRKLA-------------------------GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394 (469)
Q Consensus 340 ~~~~~~-------------------------~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 394 (469)
....+. .++.|+.|.+.+|.+++..+..+.++++|+.|++++|++...+...+.+
T Consensus 326 p~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k 405 (1081)
T KOG0618|consen 326 PDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRK 405 (1081)
T ss_pred chHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhc
Confidence 322111 1246788889999999999999999999999999999999998999999
Q ss_pred CCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCCHHHHHhh
Q 012186 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465 (469)
Q Consensus 395 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l 465 (469)
++.|++|++++|.++.. |..+..+..|+.|...+| .+...+ .+..+++|+.+|++.|++++..+..-
T Consensus 406 le~LeeL~LSGNkL~~L-p~tva~~~~L~tL~ahsN-~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~ 472 (1081)
T KOG0618|consen 406 LEELEELNLSGNKLTTL-PDTVANLGRLHTLRAHSN-QLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEA 472 (1081)
T ss_pred hHHhHHHhcccchhhhh-hHHHHhhhhhHHHhhcCC-ceeech--hhhhcCcceEEecccchhhhhhhhhh
Confidence 99999999999999987 688889999999999999 677654 68899999999999999998776553
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=2e-22 Score=212.02 Aligned_cols=362 Identities=21% Similarity=0.181 Sum_probs=249.6
Q ss_pred CCccEEEecCCCCC--hHhhHhhhcCCCCCEEecCCCc-----ccChhHhHhhhCCC-CCCEEeCCCCCcCcHHHHHHHh
Q 012186 57 SSLLSVDLSGSDVT--DSGLIHLKDCSNLQSLDFNFCI-----QISDGGLEHLRGLS-NLTSLSFRRNNAITAQGMKAFA 128 (469)
Q Consensus 57 ~~l~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~-----~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~ 128 (469)
.+++.+.+....+. ......|.+|++|+.|.+.... .+....+..+..++ +|+.|.+.++.. ...|..+
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l--~~lP~~f- 608 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL--RCMPSNF- 608 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC--CCCCCcC-
Confidence 35565555433332 1234668899999999986421 11222344555554 799999998764 4456555
Q ss_pred CCCCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCe
Q 012186 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208 (469)
Q Consensus 129 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 208 (469)
...+|+.|+++++ .+...+..+..+++|+.|+++++..+... ..+..+++|+.|++.+|......+..+..+++|+.
T Consensus 609 ~~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~i--p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~ 685 (1153)
T PLN03210 609 RPENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEI--PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLED 685 (1153)
T ss_pred CccCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcC--CccccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence 5689999999986 46666677788999999999987665533 35778899999999987655555667888999999
Q ss_pred eeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCC
Q 012186 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288 (469)
Q Consensus 209 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 288 (469)
|++++|......|..+ .+++|+.|++++|......+. ..++|+.|+++++.+.. .|..+ .+++|++|.+.++..
T Consensus 686 L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~ 759 (1153)
T PLN03210 686 LDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKS 759 (1153)
T ss_pred EeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccc-ccccc-cccccccccccccch
Confidence 9999875443334433 688999999998864433332 24688999999888753 33333 467888888876421
Q ss_pred Ch-------HHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCC
Q 012186 289 GD-------EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361 (469)
Q Consensus 289 ~~-------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 361 (469)
.. ..+.....+++|+.|++.+|......+..++.+++|+.|++++|......|..+ .+++|+.|++++|...
T Consensus 760 ~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 760 EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRL 838 (1153)
T ss_pred hhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcc
Confidence 11 111112345688999998887666667778889999999998875433333333 5788999999886543
Q ss_pred HHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCCh
Q 012186 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435 (469)
Q Consensus 362 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 435 (469)
...+. ...+|+.|++++|.++. +|.++..+++|+.|++++|.-....|..+..+++|+.+++++|+.+..
T Consensus 839 ~~~p~---~~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 839 RTFPD---ISTNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred ccccc---cccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 32121 23578899999888876 477788889999999988654444455667788888899998876654
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=2.2e-26 Score=198.78 Aligned_cols=386 Identities=19% Similarity=0.210 Sum_probs=271.4
Q ss_pred CCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCE
Q 012186 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (469)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (469)
...+++++++++..+ ..|.+++++..++.++++++ ++ ...+..++...+|+.++.+.+.. ...+..++.+..|..
T Consensus 67 L~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n-~l-s~lp~~i~s~~~l~~l~~s~n~~--~el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHN-KL-SELPEQIGSLISLVKLDCSSNEL--KELPDSIGRLLDLED 141 (565)
T ss_pred ccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccc-hH-hhccHHHhhhhhhhhhhccccce--eecCchHHHHhhhhh
Confidence 355677777777665 45666777777777777773 33 33567777778888888887765 445667777778888
Q ss_pred EecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCC
Q 012186 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (469)
Q Consensus 136 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 215 (469)
++..+| .+...|..+.++.++..+++.++ .+....+..+. ++.|++++...|-+. ..+..++++.+|+.|.+..|+
T Consensus 142 l~~~~N-~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nk 217 (565)
T KOG0472|consen 142 LDATNN-QISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNK 217 (565)
T ss_pred hhcccc-ccccCchHHHHHHHHHHhhcccc-chhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcc
Confidence 887775 56677777788888888888773 34443444444 888888888777766 445678888999999999998
Q ss_pred CchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHH
Q 012186 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295 (469)
Q Consensus 216 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 295 (469)
+... | .|.++..|+++++..|++.-...+....++++..|+++.|++. ..|..+.-+.+|..|++++|.++.. +..
T Consensus 218 i~~l-P-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~L-p~s 293 (565)
T KOG0472|consen 218 IRFL-P-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSL-PYS 293 (565)
T ss_pred cccC-C-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccC-Ccc
Confidence 8764 3 7888999999999998887655566678999999999999998 4677788888999999999988764 446
Q ss_pred hhCCCCCCEEeccCCCCChhhHHHh-----------------------------------------hCCCCCcEEecccC
Q 012186 296 LTGLCNLKCLELSDTQVGSSGLRHL-----------------------------------------SGLTNLESINLSFT 334 (469)
Q Consensus 296 ~~~~~~L~~L~l~~~~~~~~~~~~~-----------------------------------------~~~~~L~~L~l~~~ 334 (469)
++++ +|+.|.+.||++...-...+ ...-+.+.|++++-
T Consensus 294 Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ 372 (565)
T KOG0472|consen 294 LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK 372 (565)
T ss_pred cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc
Confidence 7888 89999999987533211110 11234667777766
Q ss_pred CCCchHHHhhhC--CCCCcEEEccCCCCCHH-----------------------HHHHHhcCCCCCEeecCCCCCChhHH
Q 012186 335 GISDGSLRKLAG--LSSLKSLNLDARQITDT-----------------------GLAALTSLTGLTHLDLFGARITDSGA 389 (469)
Q Consensus 335 ~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~-----------------------~~~~l~~~~~L~~L~l~~~~~~~~~~ 389 (469)
+++....+.|.. -.-....+++.|++.+. .+..+..+++|.-|++++|.+.+ .|
T Consensus 373 qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~-LP 451 (565)
T KOG0472|consen 373 QLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND-LP 451 (565)
T ss_pred ccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh-cc
Confidence 655544333321 12255666666665443 22334456777777777776655 45
Q ss_pred HHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCC
Q 012186 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458 (469)
Q Consensus 390 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 458 (469)
..+..+..||.|+++.|.+... |+.+.....++.+-.++| ++....+..+..+..|..||+.+|.+.
T Consensus 452 ~e~~~lv~Lq~LnlS~NrFr~l-P~~~y~lq~lEtllas~n-qi~~vd~~~l~nm~nL~tLDL~nNdlq 518 (565)
T KOG0472|consen 452 EEMGSLVRLQTLNLSFNRFRML-PECLYELQTLETLLASNN-QIGSVDPSGLKNMRNLTTLDLQNNDLQ 518 (565)
T ss_pred hhhhhhhhhheecccccccccc-hHHHhhHHHHHHHHhccc-cccccChHHhhhhhhcceeccCCCchh
Confidence 5666677777777777777665 665555666666666667 777777777888888888888888754
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=8.2e-22 Score=207.38 Aligned_cols=342 Identities=21% Similarity=0.173 Sum_probs=248.4
Q ss_pred HhHhhhCCCCCCEEeCCCCCc-----CcHHHHHHHhCCC-CCCEEecccccccccccccccCCCCccEEEccCCCCCChh
Q 012186 98 GLEHLRGLSNLTSLSFRRNNA-----ITAQGMKAFAGLI-NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171 (469)
Q Consensus 98 ~~~~l~~~~~L~~L~l~~~~~-----~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 171 (469)
...+|.+|++|+.|++..+.. .....|..+..++ +|+.|.+.+++ ....|..+ ...+|+.|++.++. +..
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f-~~~~L~~L~L~~s~-l~~- 625 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNF-RPENLVKLQMQGSK-LEK- 625 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcC-CccCCcEEECcCcc-ccc-
Confidence 456788999999999865421 1123445555554 69999998864 45555555 56899999999854 432
Q ss_pred hhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcC
Q 012186 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251 (469)
Q Consensus 172 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 251 (469)
.+..+..+++|+.++++++...... ..+..+++|++|++++|......|..+..+++|+.|++.+|......+..+ .+
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~i-p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEI-PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcC-CccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 3455678999999999876432222 247788999999999986656667888999999999999876433344333 68
Q ss_pred CCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCCh-------hhHHHhhCCC
Q 012186 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-------SGLRHLSGLT 324 (469)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~ 324 (469)
++|+.|++++|......+. ...+|+.|+++++.+... +.. ..+++|+.|.+.++.... ..+.....++
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~l-P~~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEF-PSN-LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccccc-ccc-ccccccccccccccchhhccccccccchhhhhccc
Confidence 8999999999864433332 246899999999876543 222 257788888887643211 1111223468
Q ss_pred CCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeC
Q 012186 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404 (469)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 404 (469)
+|+.|.+++|......|..+.++++|+.|++++|......+..+ .+++|+.|++++|......|.. .++|+.|+++
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls 854 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLS 854 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECC
Confidence 99999999997766678889999999999999975433323333 6899999999998655444432 4789999999
Q ss_pred CCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCC
Q 012186 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456 (469)
Q Consensus 405 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 456 (469)
+|.+++. |.++..+++|+.|++++|.++... +..+..+++|+.+++++|.
T Consensus 855 ~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~l-~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 855 RTGIEEV-PWWIEKFSNLSFLDMNGCNNLQRV-SLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCccC-hHHHhcCCCCCEEECCCCCCcCcc-CcccccccCCCeeecCCCc
Confidence 9999875 778999999999999999888774 4456778899999999884
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.84 E-value=8e-19 Score=161.29 Aligned_cols=209 Identities=29% Similarity=0.393 Sum_probs=110.5
Q ss_pred hhcCCCccEEEccCCCCchHHHHHhhCC---CCCCEEecCCCCCChHHH----HHhhCC-CCCCEEeccCCCCChh----
Q 012186 248 FSKIGSLKVLNLGFNEITDECLVHLKGL---TNLESLNLDSCGIGDEGL----VNLTGL-CNLKCLELSDTQVGSS---- 315 (469)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~----~~~~~~-~~L~~L~l~~~~~~~~---- 315 (469)
+..+++|+.|+++++.+....+..+..+ ++|+.|++++|.+..... ..+..+ ++|+.|++.+|.+...
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 3445555555555555543223332222 236666666555542221 123334 5566666666655422
Q ss_pred hHHHhhCCCCCcEEecccCCCCchHH----HhhhCCCCCcEEEccCCCCCHHHHH----HHhcCCCCCEeecCCCCCChh
Q 012186 316 GLRHLSGLTNLESINLSFTGISDGSL----RKLAGLSSLKSLNLDARQITDTGLA----ALTSLTGLTHLDLFGARITDS 387 (469)
Q Consensus 316 ~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~ 387 (469)
....+..+++|+.|++++|.+.+... ..+..+++|+.|++++|.++..... .+..+++|++|++++|.+++.
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~ 236 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA 236 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence 12233455566666666666654322 2233445677777776666544332 334566677777777776654
Q ss_pred HHHHhHc-----CCCCCeeeeCCCCCCHHH----HHHHhcCCCCCeeeccCCCCCChhHHH----HHHhC-ccccccccc
Q 012186 388 GAAYLRN-----FKNLRSLEICGGGLTDAG----VKHIKDLSSLTLLNLSQNCNLTDKTLE----LISGL-TGLVSLNVS 453 (469)
Q Consensus 388 ~~~~~~~-----~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~l~~~~~~----~l~~l-~~L~~L~l~ 453 (469)
....+.. .+.|+.|++++|.+++.. ...+..+++|+++++++| .+...... .+... +.|+++++.
T Consensus 237 ~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (319)
T cd00116 237 GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVK 315 (319)
T ss_pred HHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccC
Confidence 4333321 257777777777776322 233445567777777777 56654332 22333 567777777
Q ss_pred CCCC
Q 012186 454 NSRI 457 (469)
Q Consensus 454 ~~~~ 457 (469)
++++
T Consensus 316 ~~~~ 319 (319)
T cd00116 316 DDSF 319 (319)
T ss_pred CCCC
Confidence 7654
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.84 E-value=6.5e-19 Score=161.92 Aligned_cols=246 Identities=30% Similarity=0.407 Sum_probs=178.6
Q ss_pred HhhhcCCCCcEEECCCCCCChhH----HHHhhcCCCccEEEccCCCCc------hHHHHHhhCCCCCCEEecCCCCCChH
Q 012186 222 DSLSALGSLFYLNLNRCQLSDDG----CEKFSKIGSLKVLNLGFNEIT------DECLVHLKGLTNLESLNLDSCGIGDE 291 (469)
Q Consensus 222 ~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~------~~~~~~~~~l~~L~~L~l~~~~~~~~ 291 (469)
..+..+++|+.+.+.++.+.... +..+...++++.++++++.+. ...+..+..+++|+.|++++|.+...
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 34444555666666666654432 223345566777777766554 22345667789999999999988755
Q ss_pred HHHHhhCCC---CCCEEeccCCCCChhhH----HHhhCC-CCCcEEecccCCCCchH----HHhhhCCCCCcEEEccCCC
Q 012186 292 GLVNLTGLC---NLKCLELSDTQVGSSGL----RHLSGL-TNLESINLSFTGISDGS----LRKLAGLSSLKSLNLDARQ 359 (469)
Q Consensus 292 ~~~~~~~~~---~L~~L~l~~~~~~~~~~----~~~~~~-~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~ 359 (469)
....+..+. +|++|++++|.+..... ..+..+ ++|+.|++++|.+.... ...+..+++|++|++++|.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 555555444 49999999998874333 334566 89999999999988433 3345667899999999999
Q ss_pred CCHHHH----HHHhcCCCCCEeecCCCCCChhHH----HHhHcCCCCCeeeeCCCCCCHHHHHHHhc-----CCCCCeee
Q 012186 360 ITDTGL----AALTSLTGLTHLDLFGARITDSGA----AYLRNFKNLRSLEICGGGLTDAGVKHIKD-----LSSLTLLN 426 (469)
Q Consensus 360 ~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~ 426 (469)
++.... ..+..+++|++|++++|.+++... ..+..+++|+.|++++|.+++..+..+.. .+.|++|+
T Consensus 177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~ 256 (319)
T cd00116 177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLS 256 (319)
T ss_pred CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEE
Confidence 985433 344567799999999999886544 34567889999999999999865555532 37999999
Q ss_pred ccCCCCCChh----HHHHHHhCcccccccccCCCCCHHHHHhhhhc
Q 012186 427 LSQNCNLTDK----TLELISGLTGLVSLNVSNSRITSAGLRHLNHA 468 (469)
Q Consensus 427 l~~~~~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~ 468 (469)
+++| .++.. ....+..+++|+.+++++|++++.+...++.+
T Consensus 257 l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 301 (319)
T cd00116 257 LSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301 (319)
T ss_pred ccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence 9999 67632 33455677899999999999999988877643
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.80 E-value=1.2e-21 Score=169.27 Aligned_cols=393 Identities=22% Similarity=0.163 Sum_probs=240.6
Q ss_pred hcCCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCC
Q 012186 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133 (469)
Q Consensus 54 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 133 (469)
.-++....|.|..|+|+...+..|+.+++||+|+|++ +.|+.+.+.+|..+++|..|-+.++..+.+.....|+.+..|
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSK-NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccc-cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 4567889999999999988889999999999999999 589999999999999999888887555667767899999999
Q ss_pred CEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccCh------------hhhhhcc
Q 012186 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD------------SGIAYLK 201 (469)
Q Consensus 134 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------------~~~~~l~ 201 (469)
+-|.+.-|...-.....+..+++|..|.+.. +.+.......+..+..++.+++..+.+.. ..+..++
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 9999887655555567788999999999887 33444444577778888888876554221 0111112
Q ss_pred CCCCCCeeeccCCCCchhhHHhhhc-CCCCcEEECCCCCC-ChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCC
Q 012186 202 GLQKLTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNRCQL-SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279 (469)
Q Consensus 202 ~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 279 (469)
...-..-..+...++.......+.. ...+.+--...+.. .......|..+++|+.+++++|.++.....+|.....++
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~ 301 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ 301 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence 2222222222222221111111111 11111111111111 111224467788888888888888877777888888888
Q ss_pred EEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCC-----chHHHhhh--------C
Q 012186 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS-----DGSLRKLA--------G 346 (469)
Q Consensus 280 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~--------~ 346 (469)
.|.+..|.+.......|..+..|+.|++++|+++...+..|.....|..|.+-.|.+. .+..+++. .
T Consensus 302 eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~ 381 (498)
T KOG4237|consen 302 ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPR 381 (498)
T ss_pred hhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCC
Confidence 8888888776666666777888888888888888777777777777777777654321 11122221 1
Q ss_pred C---CCCcEEEccCCCCCHH---HHHHHh---------cCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHH
Q 012186 347 L---SSLKSLNLDARQITDT---GLAALT---------SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411 (469)
Q Consensus 347 ~---~~L~~L~l~~~~~~~~---~~~~l~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 411 (469)
| ..++.+.++...+.+. .+.... .++.+.++.=..|+.....|..+ ...-.++.+.+|.++.+
T Consensus 382 Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~i--P~d~telyl~gn~~~~v 459 (498)
T KOG4237|consen 382 CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGI--PVDVTELYLDGNAITSV 459 (498)
T ss_pred CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCC--CchhHHHhcccchhccc
Confidence 1 1344444443222211 111110 11222222111112222122111 23445677888887776
Q ss_pred HHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCC
Q 012186 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455 (469)
Q Consensus 412 ~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 455 (469)
..+ .+.+| .+++++| .+.......|..+.+|..|-|++|
T Consensus 460 p~~---~~~~l-~~dls~n-~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 460 PDE---LLRSL-LLDLSNN-RISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred CHH---HHhhh-hcccccC-ceehhhcccccchhhhheeEEecC
Confidence 443 34566 7888888 566656566777777777777654
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.79 E-value=5.6e-21 Score=165.23 Aligned_cols=130 Identities=23% Similarity=0.255 Sum_probs=75.3
Q ss_pred CCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCC-CCCChhHHHHhhcCCCccEEEc
Q 012186 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNL 259 (469)
Q Consensus 181 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l 259 (469)
.-..+++..|.++..+...|..+++|+.|++++|.++.+.+.+|.+++++.+|-+.+ |+++......|..+..++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 344556666666666666666666666666666666666666666666666555544 5565555556666666666666
Q ss_pred cCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCC
Q 012186 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310 (469)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 310 (469)
.-+.+.-.....+..++++..|.+..|.+....-.++..+..++.+.+..+
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence 655555555555666666666666555443332233444455555555444
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.67 E-value=3.1e-16 Score=154.04 Aligned_cols=266 Identities=21% Similarity=0.113 Sum_probs=167.1
Q ss_pred CCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeee
Q 012186 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210 (469)
Q Consensus 131 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 210 (469)
.+-..|+++.+ .+...|..+. ++|+.|++.++. ++.. +. ..++|++|++++|.++..+ . ..++|+.|+
T Consensus 201 ~~~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N~-Lt~L-P~---lp~~Lk~LdLs~N~LtsLP-~---lp~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGES-GLTTLPDCLP--AHITTLVIPDNN-LTSL-PA---LPPELRTLEVSGNQLTSLP-V---LPPGLLELS 268 (788)
T ss_pred CCCcEEEcCCC-CCCcCCcchh--cCCCEEEccCCc-CCCC-CC---CCCCCcEEEecCCccCccc-C---cccccceee
Confidence 45667777776 3445555443 478888887743 4322 11 2577888888888777542 1 245778888
Q ss_pred ccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCCh
Q 012186 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290 (469)
Q Consensus 211 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 290 (469)
+.+|.+... +. ...+|+.|++.+|.+.... . .+++|+.|++++|.+... +. ...+|+.|.+++|.+..
T Consensus 269 Ls~N~L~~L-p~---lp~~L~~L~Ls~N~Lt~LP-~---~p~~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 269 IFSNPLTHL-PA---LPSGLCKLWIFGNQLTSLP-V---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS 336 (788)
T ss_pred ccCCchhhh-hh---chhhcCEEECcCCcccccc-c---cccccceeECCCCccccC-CC---CcccccccccccCcccc
Confidence 888776543 22 1256778888887776432 1 246788888888877642 21 12357777777777653
Q ss_pred HHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhc
Q 012186 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370 (469)
Q Consensus 291 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 370 (469)
.+ . -.++|+.|++++|.+..... ..++|+.|.+++|.+... +.. ..+|+.|++++|+++..+. .
T Consensus 337 LP--~--lp~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~~L-P~l---~~~L~~LdLs~N~Lt~LP~----l 400 (788)
T PRK15387 337 LP--T--LPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSL-PAL---PSGLKELIVSGNRLTSLPV----L 400 (788)
T ss_pred cc--c--cccccceEecCCCccCCCCC----CCcccceehhhccccccC-ccc---ccccceEEecCCcccCCCC----c
Confidence 22 1 12467888888887665321 235677777777776642 211 2467888888877775321 2
Q ss_pred CCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHH
Q 012186 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442 (469)
Q Consensus 371 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~ 442 (469)
.++|+.|++++|.++.. |.. ..+|+.|++++|+++.. |..+..+++|+.|++++| .++...+..+.
T Consensus 401 ~s~L~~LdLS~N~LssI-P~l---~~~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~N-~Ls~~~~~~L~ 466 (788)
T PRK15387 401 PSELKELMVSGNRLTSL-PML---PSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGN-PLSERTLQALR 466 (788)
T ss_pred ccCCCEEEccCCcCCCC-Ccc---hhhhhhhhhccCccccc-ChHHhhccCCCeEECCCC-CCCchHHHHHH
Confidence 35778888888877763 322 34667778888877754 666777788888888888 67766666553
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.66 E-value=1.3e-15 Score=149.68 Aligned_cols=264 Identities=16% Similarity=0.064 Sum_probs=129.7
Q ss_pred CCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEE
Q 012186 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186 (469)
Q Consensus 107 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 186 (469)
.-..|+++++.+ . .+|..+. ++|+.|.+..|. +...+. ..++|++|++++|. ++.. +. ..++|+.|+
T Consensus 202 ~~~~LdLs~~~L-t-sLP~~l~--~~L~~L~L~~N~-Lt~LP~---lp~~Lk~LdLs~N~-LtsL-P~---lp~sL~~L~ 268 (788)
T PRK15387 202 GNAVLNVGESGL-T-TLPDCLP--AHITTLVIPDNN-LTSLPA---LPPELRTLEVSGNQ-LTSL-PV---LPPGLLELS 268 (788)
T ss_pred CCcEEEcCCCCC-C-cCCcchh--cCCCEEEccCCc-CCCCCC---CCCCCcEEEecCCc-cCcc-cC---cccccceee
Confidence 445566666543 2 2344333 256666666542 333221 23566666666532 3321 11 134566666
Q ss_pred ecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCch
Q 012186 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266 (469)
Q Consensus 187 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (469)
+.+|.+...+. ..++|+.|++++|.++.. |. ..++|+.|++++|++.... . ...+|+.|++++|.++.
T Consensus 269 Ls~N~L~~Lp~----lp~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~Lp-~---lp~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 269 IFSNPLTHLPA----LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLP-A---LPSELCKLWAYNNQLTS 336 (788)
T ss_pred ccCCchhhhhh----chhhcCEEECcCCccccc-cc---cccccceeECCCCccccCC-C---CcccccccccccCcccc
Confidence 66665543221 123455666666655543 21 1345666666666554321 1 12345556666665543
Q ss_pred HHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhC
Q 012186 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346 (469)
Q Consensus 267 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 346 (469)
.+. ...+|+.|++++|.+...+. ..++|+.|++.+|.+.... . ..++|+.|++++|.+.... . .
T Consensus 337 -LP~---lp~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~~LP-~---l~~~L~~LdLs~N~Lt~LP-~---l 400 (788)
T PRK15387 337 -LPT---LPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLTSLP-V---L 400 (788)
T ss_pred -ccc---cccccceEecCCCccCCCCC----CCcccceehhhccccccCc-c---cccccceEEecCCcccCCC-C---c
Confidence 111 11356666666665543211 1235556666666554321 1 1245666666666554321 1 1
Q ss_pred CCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHH
Q 012186 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416 (469)
Q Consensus 347 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 416 (469)
.++|+.|++++|.++..+. ...+|+.|++++|+++. +|..+..++.|+.|++++|.+++..+..+
T Consensus 401 ~s~L~~LdLS~N~LssIP~----l~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 401 PSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ccCCCEEEccCCcCCCCCc----chhhhhhhhhccCcccc-cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 2456666666666654321 12345566666666654 35555566666666666666665555444
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.58 E-value=7e-15 Score=145.45 Aligned_cols=244 Identities=15% Similarity=0.135 Sum_probs=112.5
Q ss_pred CccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEEC
Q 012186 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235 (469)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 235 (469)
+...|++++.. ++. .+..+ .++|+.|++++|.++..+... .++|++|++++|.+... |..+. ++|+.|++
T Consensus 179 ~~~~L~L~~~~-Lts-LP~~I--p~~L~~L~Ls~N~LtsLP~~l---~~nL~~L~Ls~N~LtsL-P~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILG-LTT-IPACI--PEQITTLILDNNELKSLPENL---QGNIKTLYANSNQLTSI-PATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCC-cCc-CCccc--ccCCcEEEecCCCCCcCChhh---ccCCCEEECCCCccccC-Chhhh--ccccEEEC
Confidence 45566666532 222 12222 245667777766666433222 23666677766665543 22222 35666666
Q ss_pred CCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChh
Q 012186 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315 (469)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 315 (469)
++|.+.. .+..+. .+|+.|++++|.+.. .+..+. ++|+.|++++|.+...+ ..+ .++|+.|++.+|.+...
T Consensus 249 s~N~L~~-LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~LP-~~l--p~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 249 SINRITE-LPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTLP-AHL--PSGITHLNVQSNSLTAL 319 (754)
T ss_pred cCCccCc-CChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccCc-ccc--hhhHHHHHhcCCccccC
Confidence 6666553 222222 356666666666553 232221 35666666666554321 111 12455555555544432
Q ss_pred hHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcC
Q 012186 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395 (469)
Q Consensus 316 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 395 (469)
.. . ..++|+.|.+++|.++.. +..+. ++|+.|++++|+++.. +..+ .++|+.|++++|.++..+ ..+.
T Consensus 320 P~-~--l~~sL~~L~Ls~N~Lt~L-P~~l~--~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N~Lt~LP-~~l~-- 387 (754)
T PRK15370 320 PE-T--LPPGLKTLEAGENALTSL-PASLP--PELQVLDVSKNQITVL-PETL--PPTITTLDVSRNALTNLP-ENLP-- 387 (754)
T ss_pred Cc-c--ccccceeccccCCccccC-Chhhc--CcccEEECCCCCCCcC-Chhh--cCCcCEEECCCCcCCCCC-HhHH--
Confidence 11 1 124555555555554432 22221 4555555555555432 1122 235555555555555432 2221
Q ss_pred CCCCeeeeCCCCCCHH---HHHHHhcCCCCCeeeccCC
Q 012186 396 KNLRSLEICGGGLTDA---GVKHIKDLSSLTLLNLSQN 430 (469)
Q Consensus 396 ~~L~~L~l~~~~~~~~---~~~~l~~~~~L~~L~l~~~ 430 (469)
..|+.|++++|+++.. .|.....++.+..|++.+|
T Consensus 388 ~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 388 AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCC
Confidence 2355555555554432 1112223345555555555
No 20
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.56 E-value=5.9e-14 Score=120.44 Aligned_cols=257 Identities=23% Similarity=0.300 Sum_probs=130.2
Q ss_pred hhhccCCCCCCeeeccCCCCchhhH----HhhhcCCCCcEEECCCC---CCChhHH-------HHhhcCCCccEEEccCC
Q 012186 197 IAYLKGLQKLTLLNLEGCPVTAACL----DSLSALGSLFYLNLNRC---QLSDDGC-------EKFSKIGSLKVLNLGFN 262 (469)
Q Consensus 197 ~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~---~~~~~~~-------~~~~~~~~L~~L~l~~~ 262 (469)
...+.....+++++++||.+...-. ..+.+.++|+..++++- ....+.+ ..+..+|+|+.++++.|
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 3455667778888888887755322 33445667777766542 1222222 22344567777777777
Q ss_pred CCchHHHH----HhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCc
Q 012186 263 EITDECLV----HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338 (469)
Q Consensus 263 ~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 338 (469)
.+....+. .+.++..|++|.+.+|+++......++. .|..+. .....+..+.|+++...+|++.+
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeecccccc
Confidence 65543322 2355667777777777665443333221 000000 00112234555555555555444
Q ss_pred hHHH----hhhCCCCCcEEEccCCCCCHHHH----HHHhcCCCCCEeecCCCCCChhHHH----HhHcCCCCCeeeeCCC
Q 012186 339 GSLR----KLAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDLFGARITDSGAA----YLRNFKNLRSLEICGG 406 (469)
Q Consensus 339 ~~~~----~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~ 406 (469)
.+.. .+...+.|+.+.+..|.+...+. ..+..|++|+.|++..|-++..... .+..++.|+++++++|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 3322 22334555666555555543322 3344566666666666555443322 2344556666666666
Q ss_pred CCCHHHHHHH-----hcCCCCCeeeccCCCCCChhHHH----HHHhCcccccccccCCCC--CHHHHHhh
Q 012186 407 GLTDAGVKHI-----KDLSSLTLLNLSQNCNLTDKTLE----LISGLTGLVSLNVSNSRI--TSAGLRHL 465 (469)
Q Consensus 407 ~~~~~~~~~l-----~~~~~L~~L~l~~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~--~~~~~~~l 465 (469)
.+...+...+ ...|+|+.|.+.+| .++..... .+...|.|+.|+|++|.+ .+.++..+
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei 320 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEI 320 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHH
Confidence 5554433333 23566666666666 44443322 223456666666666666 44554444
No 21
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.55 E-value=1.1e-13 Score=118.83 Aligned_cols=236 Identities=20% Similarity=0.230 Sum_probs=145.2
Q ss_pred hhcccCCCCCCEEEecccccChhh----hhhccCCCCCCeeeccCCC---Cchhh-------HHhhhcCCCCcEEECCCC
Q 012186 173 MKPLSGLTNLKSLQISCSKVTDSG----IAYLKGLQKLTLLNLEGCP---VTAAC-------LDSLSALGSLFYLNLNRC 238 (469)
Q Consensus 173 ~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~---~~~~~-------~~~~~~~~~L~~L~l~~~ 238 (469)
...+..+..++.+++++|.+.... ...+.+.++|+..++++-. ..... ..++..+|+|+++++++|
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 344557889999999999887543 3456778899999988642 22222 235567889999999999
Q ss_pred CCChhHHHHh----hcCCCccEEEccCCCCchHHHHHh-------------hCCCCCCEEecCCCCCChHHH----HHhh
Q 012186 239 QLSDDGCEKF----SKIGSLKVLNLGFNEITDECLVHL-------------KGLTNLESLNLDSCGIGDEGL----VNLT 297 (469)
Q Consensus 239 ~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~-------------~~l~~L~~L~l~~~~~~~~~~----~~~~ 297 (469)
.+....+..| .++..|+.|.+.+|.+.......+ ..-+.|+.+...+|.+.+.+. ..+.
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 9877665544 678999999999998864332222 334677777777776654332 2345
Q ss_pred CCCCCCEEeccCCCCChhhH----HHhhCCCCCcEEecccCCCCchHHH----hhhCCCCCcEEEccCCCCCHHHHHHHh
Q 012186 298 GLCNLKCLELSDTQVGSSGL----RHLSGLTNLESINLSFTGISDGSLR----KLAGLSSLKSLNLDARQITDTGLAALT 369 (469)
Q Consensus 298 ~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~l~ 369 (469)
..+.|+.+.+..|.+..... ..+..+++|+.|++.+|.++..... .++.+++|+.+.+++|.+...+...+.
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 56677777777765544333 2344666666666666665544333 233455666666666665544333322
Q ss_pred -----cCCCCCEeecCCCCCChhHHH----HhHcCCCCCeeeeCCCCC
Q 012186 370 -----SLTGLTHLDLFGARITDSGAA----YLRNFKNLRSLEICGGGL 408 (469)
Q Consensus 370 -----~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~ 408 (469)
..|+|+.+.+.+|.++..... .+...+.|..|++++|.+
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 345556666655555543222 223345555555555555
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=1.5e-13 Score=136.21 Aligned_cols=205 Identities=18% Similarity=0.148 Sum_probs=79.8
Q ss_pred CCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEcc
Q 012186 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260 (469)
Q Consensus 181 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 260 (469)
+|+.|++++|.++..+. .+ .++|+.|++++|.+... |..+. .+|+.|++++|.+.. .+..+ .++|+.|+++
T Consensus 221 nL~~L~Ls~N~LtsLP~-~l--~~~L~~L~Ls~N~L~~L-P~~l~--s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls 291 (754)
T PRK15370 221 NIKTLYANSNQLTSIPA-TL--PDTIQEMELSINRITEL-PERLP--SALQSLDLFHNKISC-LPENL--PEELRYLSVY 291 (754)
T ss_pred CCCEEECCCCccccCCh-hh--hccccEEECcCCccCcC-ChhHh--CCCCEEECcCCccCc-ccccc--CCCCcEEECC
Confidence 45555555444443211 11 12345555555544432 22221 245555555444432 12211 1345555555
Q ss_pred CCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchH
Q 012186 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340 (469)
Q Consensus 261 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 340 (469)
+|.++.. +..+. ++|+.|++++|.+...+ .. -.++|+.|++.+|.+.... ..+ +++|+.|++++|.+...
T Consensus 292 ~N~Lt~L-P~~lp--~sL~~L~Ls~N~Lt~LP-~~--l~~sL~~L~Ls~N~Lt~LP-~~l--~~sL~~L~Ls~N~L~~L- 361 (754)
T PRK15370 292 DNSIRTL-PAHLP--SGITHLNVQSNSLTALP-ET--LPPGLKTLEAGENALTSLP-ASL--PPELQVLDVSKNQITVL- 361 (754)
T ss_pred CCccccC-cccch--hhHHHHHhcCCccccCC-cc--ccccceeccccCCccccCC-hhh--cCcccEEECCCCCCCcC-
Confidence 5444421 11111 23444445444443211 11 1134455555554443321 111 23455555555544321
Q ss_pred HHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChh---HHHHhHcCCCCCeeeeCCCCCC
Q 012186 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS---GAAYLRNFKNLRSLEICGGGLT 409 (469)
Q Consensus 341 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~ 409 (469)
+..+. ++|+.|++++|.++..+. .+. ..|+.|++++|++... ++.....++.+..|++.+|.+.
T Consensus 362 P~~lp--~~L~~LdLs~N~Lt~LP~-~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 362 PETLP--PTITTLDVSRNALTNLPE-NLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred Chhhc--CCcCEEECCCCcCCCCCH-hHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 12221 345555555554443321 111 1344455555544421 1112222344455555555444
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.49 E-value=1.5e-15 Score=152.55 Aligned_cols=208 Identities=19% Similarity=0.156 Sum_probs=144.1
Q ss_pred CcHHHHHHHHHHHHhccCCCHHhHH-hhccCceeEEecCCCCCCCH-----HHHHHH-----------HhcCCCccEEEe
Q 012186 2 LPRDISQQIFNELVYSRCLTEVSLE-AFRDCALQDLCLGQYPGVND-----KWMDVI-----------ASQGSSLLSVDL 64 (469)
Q Consensus 2 ~~~e~~~~~~~~lv~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~-----~~~~~~-----------~~~~~~l~~L~l 64 (469)
..++.|..|+.+||++++++..... .+..|+|||+..+.+-.... .-.... ......+|.+.+
T Consensus 451 ~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~ 530 (889)
T KOG4658|consen 451 TAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSL 530 (889)
T ss_pred chhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEE
Confidence 4578999999999999999988754 56678899886542211111 000000 012235677777
Q ss_pred cCCCCChHhhHhhhcCCCCCEEecCCCcc-cChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccc
Q 012186 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQ-ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143 (469)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 143 (469)
.++.+... ..-..+++|++|-+..+.. +.......|..++.|++||+++|. .....|..++.+.+||+|++++. .
T Consensus 531 ~~~~~~~~--~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~-~l~~LP~~I~~Li~LryL~L~~t-~ 606 (889)
T KOG4658|consen 531 MNNKIEHI--AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS-SLSKLPSSIGELVHLRYLDLSDT-G 606 (889)
T ss_pred eccchhhc--cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC-ccCcCChHHhhhhhhhcccccCC-C
Confidence 77665321 2224777899999987432 555556678899999999999876 34567999999999999999994 6
Q ss_pred cccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccc--cChhhhhhccCCCCCCeeeccCC
Q 012186 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK--VTDSGIAYLKGLQKLTLLNLEGC 214 (469)
Q Consensus 144 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~ 214 (469)
+...|..+++++.|.+|++..+...... +.....+++|++|.+.... .+......+..+.+|+.+.+...
T Consensus 607 I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 607 ISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred ccccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence 7788899999999999999886654433 4555568999999986543 33334455566667776666443
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.46 E-value=2.2e-13 Score=119.65 Aligned_cols=359 Identities=24% Similarity=0.352 Sum_probs=187.2
Q ss_pred CCcHHHHHHHHHHHHhccCCCHHhHH-hhccCce-----eEEecCCCC-CCCHHHHHHHHh-cCCCccEEEecCCCC-Ch
Q 012186 1 MLPRDISQQIFNELVYSRCLTEVSLE-AFRDCAL-----QDLCLGQYP-GVNDKWMDVIAS-QGSSLLSVDLSGSDV-TD 71 (469)
Q Consensus 1 ~~~~e~~~~~~~~lv~~~~~~~~~~~-~~~~~~~-----~~l~~~~~~-~~~~~~~~~~~~-~~~~l~~L~l~~~~~-~~ 71 (469)
.+|+|+.-.+|..|-....-+-...- .|..|++ +++.+-.++ ++.......+.. ...-+++|.+.+..- .+
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~ 153 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGD 153 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccCCc
Confidence 37888888888877665555443322 2223322 222221111 222222222222 235788888887653 33
Q ss_pred HhhHhh-hcCCCCCEEecCCCcccChhHhHhh-hCCCCCCEEeCCCCCcCcHHHHHHH-hCCCCCCEEecccccccccc-
Q 012186 72 SGLIHL-KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAF-AGLINLVKLDLERCTRIHGG- 147 (469)
Q Consensus 72 ~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~- 147 (469)
.....+ ..||+++.|++.+|..+++.....+ ..|++|+++++..|..++......+ ..+++|++|+++.|+.+.+.
T Consensus 154 sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~g 233 (483)
T KOG4341|consen 154 SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNG 233 (483)
T ss_pred chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCc
Confidence 333333 6889999999999888888877777 4688999999998877666666544 46889999999888766652
Q ss_pred c-ccccCCCCccEEEccCCCCCChhhhhcc-cCCCCCCEEEeccc-ccChhhhhhc-cCCCCCCeeeccCC-CCchhhHH
Q 012186 148 L-VNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQISCS-KVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLD 222 (469)
Q Consensus 148 ~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~-~~~~~~~~~l-~~l~~L~~L~l~~~-~~~~~~~~ 222 (469)
. .-...+..++.+..+||........... ..++.+..+++..+ .+++.....+ ..+..|+.+..+++ .+......
T Consensus 234 v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~ 313 (483)
T KOG4341|consen 234 VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLW 313 (483)
T ss_pred chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHH
Confidence 1 2234566677777777766554333222 24455555555444 3343322222 44566677766665 33332222
Q ss_pred hhh-cCCCCcEEECCCCC-CChhHHHHh-hcCCCccEEEccCCCCchH--HHHHhhCCCCCCEEecCCCC-CChHHHHHh
Q 012186 223 SLS-ALGSLFYLNLNRCQ-LSDDGCEKF-SKIGSLKVLNLGFNEITDE--CLVHLKGLTNLESLNLDSCG-IGDEGLVNL 296 (469)
Q Consensus 223 ~~~-~~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~ 296 (469)
.++ ++++|+.+-+..++ +++.....+ .+.+.|+.+++..+..... ....-.+++.|+.+.+++|. ++++....+
T Consensus 314 aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l 393 (483)
T KOG4341|consen 314 ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL 393 (483)
T ss_pred HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence 332 35666666665554 333222222 2344555555544432211 11111234455555555442 122211111
Q ss_pred hCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCC-CCchHHHhhhCCCCCcEEEccCC-CCCHHHHHHHh-cCCC
Q 012186 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALT-SLTG 373 (469)
Q Consensus 297 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~-~~~~ 373 (469)
.. .-.....|+.+.++++. +++.....+..+++|+.+++-++ +++......+. .+|+
T Consensus 394 ~~--------------------~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~ 453 (483)
T KOG4341|consen 394 SS--------------------SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPN 453 (483)
T ss_pred hh--------------------ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCcc
Confidence 11 00133455566666653 33444455556666666666553 33333333332 5566
Q ss_pred CCEeec
Q 012186 374 LTHLDL 379 (469)
Q Consensus 374 L~~L~l 379 (469)
++...+
T Consensus 454 i~v~a~ 459 (483)
T KOG4341|consen 454 IKVHAY 459 (483)
T ss_pred ceehhh
Confidence 555444
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.38 E-value=3.5e-13 Score=118.38 Aligned_cols=301 Identities=30% Similarity=0.438 Sum_probs=213.9
Q ss_pred eeEEecCCCCCCCHHHHHHHHhcCCCccEEEecCC-CCChHhhHhh-hcCCCCCEEecCCCcccChhHhHhh-hCCCCCC
Q 012186 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLT 109 (469)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~-~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~ 109 (469)
++.+.+..+.++.+.-.......++++++|.+.++ .+++....++ ..|++|+.+++..|..+++...+.+ ..|++|.
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 77788888888888888888889999999999875 5677666666 5899999999999999999888855 5899999
Q ss_pred EEeCCCCCcCcHHHHH-HHhCCCCCCEEeccccccccccc--ccccCCCCccEEEccCCCCCChhhhhccc-CCCCCCEE
Q 012186 110 SLSFRRNNAITAQGMK-AFAGLINLVKLDLERCTRIHGGL--VNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSL 185 (469)
Q Consensus 110 ~L~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L 185 (469)
|++++.|+.+.+.... ....+..++.+..++|...+... ..-+.++.+-.+++..|..+++.....+. ++..|+.+
T Consensus 220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l 299 (483)
T KOG4341|consen 220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVL 299 (483)
T ss_pred HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhh
Confidence 9999999876654333 34567778888888876544332 22245566777777788888876654443 67889999
Q ss_pred Eeccc-ccChhhhhhc-cCCCCCCeeeccCC-CCchhhHHhhh-cCCCCcEEECCCCCCChhH-HHHh-hcCCCccEEEc
Q 012186 186 QISCS-KVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDG-CEKF-SKIGSLKVLNL 259 (469)
Q Consensus 186 ~l~~~-~~~~~~~~~l-~~l~~L~~L~l~~~-~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~-~~~~-~~~~~L~~L~l 259 (469)
..+++ .+++.....+ .++++|+.+.+.++ +++......++ +++.|+.+++..+...... ...+ .+++.|+.+.+
T Consensus 300 ~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lsl 379 (483)
T KOG4341|consen 300 CYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSL 379 (483)
T ss_pred cccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCCh
Confidence 98765 4565555555 57789999999998 45554344444 4789999999887643322 2222 46899999999
Q ss_pred cCCCC-chHHHHHh----hCCCCCCEEecCCCCC-ChHHHHHhhCCCCCCEEeccCCC-CChhhHHHh-hCCCCCcEEec
Q 012186 260 GFNEI-TDECLVHL----KGLTNLESLNLDSCGI-GDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHL-SGLTNLESINL 331 (469)
Q Consensus 260 ~~~~~-~~~~~~~~----~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l 331 (469)
+++.. ++.....+ .....+..+.++++.. ++...+.+..+++|+.+++.+++ +.......+ ..+|++++..+
T Consensus 380 shce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 380 SHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 98753 33322222 3456788888988854 44556667788899999988873 333333333 46777777666
Q ss_pred cc
Q 012186 332 SF 333 (469)
Q Consensus 332 ~~ 333 (469)
..
T Consensus 460 ~a 461 (483)
T KOG4341|consen 460 FA 461 (483)
T ss_pred cc
Confidence 54
No 26
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.30 E-value=2.3e-14 Score=110.29 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=96.8
Q ss_pred cCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCcc
Q 012186 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158 (469)
Q Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 158 (469)
.+.++..|.++++ +++. .+..+..+.+|+.|+++++.+ ...|..++.+++|+.|+++-+ .....|..++.+|.|+
T Consensus 31 ~~s~ITrLtLSHN-Kl~~-vppnia~l~nlevln~~nnqi--e~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTV-VPPNIAELKNLEVLNLSNNQI--EELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALE 105 (264)
T ss_pred chhhhhhhhcccC-ceee-cCCcHHHhhhhhhhhcccchh--hhcChhhhhchhhhheecchh-hhhcCccccCCCchhh
Confidence 4556666666663 3433 345566667777777776665 556667777777777777654 4555566677777777
Q ss_pred EEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCC
Q 012186 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238 (469)
Q Consensus 159 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (469)
+|++.+++--....+..+..+..|+.|.+.+|.+. ..+..++++++|+.|.+..|.+... |..++.++.|++|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~l-pkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSL-PKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhC-cHHHHHHHHHHHHhcccc
Confidence 77777755444455566666666777777666665 3344556666666666666655443 455556666666666666
Q ss_pred CCCh
Q 012186 239 QLSD 242 (469)
Q Consensus 239 ~~~~ 242 (469)
.++.
T Consensus 184 rl~v 187 (264)
T KOG0617|consen 184 RLTV 187 (264)
T ss_pred eeee
Confidence 5543
No 27
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=3.6e-12 Score=107.21 Aligned_cols=263 Identities=22% Similarity=0.245 Sum_probs=152.3
Q ss_pred CcHHHHHHHHHHHHhccCCCHHhHHhhccCceeEEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCChHhhHhhhcCC
Q 012186 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCS 81 (469)
Q Consensus 2 ~~~e~~~~~~~~lv~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~ 81 (469)
+|.|+..++|.-|...-++.... ++..|. .++......+.+|+.+-.|.......+. =.
T Consensus 101 lpDEill~IFs~L~kk~LL~~~~-------------------VC~Rfy-r~~~de~lW~~lDl~~r~i~p~~l~~l~-~r 159 (419)
T KOG2120|consen 101 LPDEILLGIFSCLCKKELLKVSG-------------------VCKRFY-RLASDESLWQTLDLTGRNIHPDVLGRLL-SR 159 (419)
T ss_pred CCHHHHHHHHHhccHHHHHHHHH-------------------HHHHHh-hccccccceeeeccCCCccChhHHHHHH-hC
Confidence 68888888887766555554331 122222 1233445677788877666533222221 12
Q ss_pred CCCEEecCCCcccChh-HhHhhhCC-CCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCccE
Q 012186 82 NLQSLDFNFCIQISDG-GLEHLRGL-SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159 (469)
Q Consensus 82 ~L~~L~l~~~~~~~~~-~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 159 (469)
.+.++.+.. ..+... ..+.+.-+ .+|++|||++..+.....-..++.|.+|+.|++.+....+.....+++-.+|+.
T Consensus 160 gV~v~Rlar-~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~ 238 (419)
T KOG2120|consen 160 GVIVFRLAR-SFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVR 238 (419)
T ss_pred CeEEEEcch-hhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccccee
Confidence 344444432 111111 12222222 368899999887766777788888999999999887655555566777888888
Q ss_pred EEccCCCCCChhhhh-cccCCCCCCEEEecccccChhhhhhc--cCCCCCCeeeccCCC--CchhhHH-hhhcCCCCcEE
Q 012186 160 LNIKWCNCITDSDMK-PLSGLTNLKSLQISCSKVTDSGIAYL--KGLQKLTLLNLEGCP--VTAACLD-SLSALGSLFYL 233 (469)
Q Consensus 160 L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~--~~~~~~~-~~~~~~~L~~L 233 (469)
|+++.|+.++..... .+..+..|..|+++.+.+........ +--++|..|+++|+. +.....+ ...++|+|..|
T Consensus 239 lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 239 LNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred eccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 888888877765443 34577888888888776554333222 223567777777762 2111112 22356777777
Q ss_pred ECCCCC-CChhHHHHhhcCCCccEEEccCCCCc-hHHHHHhhCCCCCCEEecCCC
Q 012186 234 NLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEIT-DECLVHLKGLTNLESLNLDSC 286 (469)
Q Consensus 234 ~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~ 286 (469)
+++++. +.......|..++.|++|.++.|..- ....-.+...|.|.+|++.++
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 776654 44444455566677777777665421 111112345566666666665
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=8.9e-13 Score=116.55 Aligned_cols=212 Identities=21% Similarity=0.234 Sum_probs=123.8
Q ss_pred hcCCCccEEEccCCCCchHHH-HHhhCCCCCCEEecCCCCCCh--HHHHHhhCCCCCCEEeccCCCCChhhHHH-hhCCC
Q 012186 249 SKIGSLKVLNLGFNEITDECL-VHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRH-LSGLT 324 (469)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~ 324 (469)
..+.+|+.+.+.++....... .....+++++.|+++.|-+.. ........+|+|+.|+++.|.+....... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 345666666666655443221 234566777777777664332 12223346677777777776543322111 12557
Q ss_pred CCcEEecccCCCCchHHHh-hhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhH-HHHhHcCCCCCeee
Q 012186 325 NLESINLSFTGISDGSLRK-LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRNFKNLRSLE 402 (469)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ 402 (469)
.|+.|.++.|.++...... +..+|+|+.|.+..|............+..|++|++++|.+.+.. ......++.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 7777777777776543333 345788888888776321111222334556778888877665432 23456677888888
Q ss_pred eCCCCCCHHHH-H-----HHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCCCHH
Q 012186 403 ICGGGLTDAGV-K-----HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460 (469)
Q Consensus 403 l~~~~~~~~~~-~-----~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 460 (469)
++.+.+..... . -...+++|++|++..|+.........+..+++|+.|.+..|+++.+
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 88877765321 1 1234788888888888432333445566677888888777777653
No 29
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.26 E-value=2.1e-14 Score=110.50 Aligned_cols=158 Identities=23% Similarity=0.253 Sum_probs=102.2
Q ss_pred CCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEE
Q 012186 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354 (469)
Q Consensus 275 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 354 (469)
+.+++.|.+++|.++.. ++.++.+.+|+.|++.+|++.. .+..++.+++|+.|+++-|.+.. .|..|+.+|.|+.|+
T Consensus 32 ~s~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~~-lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLNI-LPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhhc-CccccCCCchhhhhh
Confidence 34555566666665432 3345566666666666666554 34456666777777766555432 456677777777777
Q ss_pred ccCCCCCHH-HHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCC
Q 012186 355 LDARQITDT-GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433 (469)
Q Consensus 355 l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l 433 (469)
+.+|++.+. .+..|..+..|+-|.++.|.+.- .|..++++.+||.|.+..|.+... |..++.++.|++|+|++| .+
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~-lp~dvg~lt~lqil~lrdndll~l-pkeig~lt~lrelhiqgn-rl 185 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDLLSL-PKEIGDLTRLRELHIQGN-RL 185 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCccc-CChhhhhhcceeEEeeccCchhhC-cHHHHHHHHHHHHhcccc-ee
Confidence 777666542 23445566667777777776654 456677788888888888777665 667777888888888888 55
Q ss_pred ChhHH
Q 012186 434 TDKTL 438 (469)
Q Consensus 434 ~~~~~ 438 (469)
+-.+|
T Consensus 186 ~vlpp 190 (264)
T KOG0617|consen 186 TVLPP 190 (264)
T ss_pred eecCh
Confidence 55444
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.19 E-value=6.2e-12 Score=126.80 Aligned_cols=243 Identities=23% Similarity=0.242 Sum_probs=148.9
Q ss_pred cCCCccEEEecCCC--CChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCC
Q 012186 55 QGSSLLSVDLSGSD--VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132 (469)
Q Consensus 55 ~~~~l~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 132 (469)
.++++++|-+.++. +.......|..++.|++|++++|... ...|..++.+-+||||+++++.+ ..+|..++++.+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~L~~t~I--~~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLDLSDTGI--SHLPSGLGNLKK 619 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc-CcCChHHhhhhhhhcccccCCCc--cccchHHHHHHh
Confidence 45679999999875 44444566889999999999986544 34689999999999999999986 578999999999
Q ss_pred CCEEecccccccccccccccCCCCccEEEccCCC-CCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCe---
Q 012186 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN-CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL--- 208 (469)
Q Consensus 133 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~--- 208 (469)
|.+|++..+......+.....+++||+|.+.... ..+......+..+.+|+.+.+..... .....+...+.|.+
T Consensus 620 L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQ 697 (889)
T ss_pred hheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhH
Confidence 9999999876555555556779999999998754 33334455566777777777643332 11222333333332
Q ss_pred -eeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhc------CCCccEEEccCCCCchHHHHHhhCCCCCCEE
Q 012186 209 -LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK------IGSLKVLNLGFNEITDECLVHLKGLTNLESL 281 (469)
Q Consensus 209 -L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 281 (469)
+.+.++... .....+..+.+|+.|.+.++...+........ ++++..+.+.++... ..+.+....++|+.|
T Consensus 698 ~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l 775 (889)
T KOG4658|consen 698 SLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSL 775 (889)
T ss_pred hhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEE
Confidence 222222222 22445667788888888887765432211111 112222222222111 112223344667777
Q ss_pred ecCCCCCChHHHHHhhCCCCCCE
Q 012186 282 NLDSCGIGDEGLVNLTGLCNLKC 304 (469)
Q Consensus 282 ~l~~~~~~~~~~~~~~~~~~L~~ 304 (469)
.+..|....++++....+..++.
T Consensus 776 ~l~~~~~~e~~i~~~k~~~~l~~ 798 (889)
T KOG4658|consen 776 SLVSCRLLEDIIPKLKALLELKE 798 (889)
T ss_pred EEecccccccCCCHHHHhhhccc
Confidence 77666554444444444444443
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=2.1e-11 Score=108.07 Aligned_cols=135 Identities=22% Similarity=0.242 Sum_probs=54.4
Q ss_pred CCCCCEEeccccccccccc-ccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhh-hhhccCCCCCC
Q 012186 130 LINLVKLDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG-IAYLKGLQKLT 207 (469)
Q Consensus 130 l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~ 207 (469)
+++|+.|.++.|....... ..+..+|+|+.|++.++..+. ........+..|+.|++++|.+.+.. ......++.|+
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~-~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL-IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc-eecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 3445555555543332222 113344555555554432111 01111122344555555544433221 12234445555
Q ss_pred eeeccCCCCchhhH------HhhhcCCCCcEEECCCCCCChh-HHHHhhcCCCccEEEccCCCCc
Q 012186 208 LLNLEGCPVTAACL------DSLSALGSLFYLNLNRCQLSDD-GCEKFSKIGSLKVLNLGFNEIT 265 (469)
Q Consensus 208 ~L~l~~~~~~~~~~------~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~ 265 (469)
.|+++.+.+...-. .....+++|++|++..|++.+- ....+..+++|+.|.+..+.++
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 55555444333110 1122345566666655554221 1123334455555555444443
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=4e-11 Score=96.73 Aligned_cols=126 Identities=29% Similarity=0.349 Sum_probs=36.1
Q ss_pred CCCCcEEecccCCCCchHHHhhh-CCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCee
Q 012186 323 LTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401 (469)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 401 (469)
+.++++|++.++.++.. ..++ .+.+|+.|++++|.++.. ..+..++.|+.|++++|.+++........+|+|+.|
T Consensus 18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 33455555555555432 2233 345566666666666552 344555666666666666665433222346666666
Q ss_pred eeCCCCCCHHH-HHHHhcCCCCCeeeccCCCCC--ChhHHHHHHhCcccccccc
Q 012186 402 EICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNL--TDKTLELISGLTGLVSLNV 452 (469)
Q Consensus 402 ~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~l--~~~~~~~l~~l~~L~~L~l 452 (469)
++++|++.+.. ...+..+++|+.|++.+||.. ...-...+..+|+|+.||-
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 66666554421 123455666777777666421 1112233456677776664
No 33
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=6.6e-11 Score=99.75 Aligned_cols=206 Identities=23% Similarity=0.261 Sum_probs=143.1
Q ss_pred HHHHHhcCCCccEEEecCCCCChHhh-HhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHH-HH
Q 012186 49 MDVIASQGSSLLSVDLSGSDVTDSGL-IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM-KA 126 (469)
Q Consensus 49 ~~~~~~~~~~l~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~ 126 (469)
.+......+.++++||+...|+.... ..++.|.+|+.|+++| ..+.+.....+.+-.+|+.|+++.|..++.... -.
T Consensus 177 ae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll 255 (419)
T KOG2120|consen 177 AEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLL 255 (419)
T ss_pred hhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHhccccceeeccccccccchhHHHHH
Confidence 33444444678999999888876444 5568999999999998 578888888888889999999999887766544 45
Q ss_pred HhCCCCCCEEeccccccccccccc-cc-CCCCccEEEccCCCCCC-hhhhhcc-cCCCCCCEEEeccc-ccChhhhhhcc
Q 012186 127 FAGLINLVKLDLERCTRIHGGLVN-LK-GLMKLESLNIKWCNCIT-DSDMKPL-SGLTNLKSLQISCS-KVTDSGIAYLK 201 (469)
Q Consensus 127 ~~~l~~L~~L~l~~~~~~~~~~~~-l~-~l~~L~~L~l~~~~~~~-~~~~~~~-~~~~~L~~L~l~~~-~~~~~~~~~l~ 201 (469)
+..|..|..|+++.|......... +. --++|..|+++|+...- ......+ ..+|+|.+|+++++ .++......+.
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~ 335 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 335 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence 678999999999998655544322 22 23678888888864322 1122222 47899999999876 56666677888
Q ss_pred CCCCCCeeeccCCCCch-hhHHhhhcCCCCcEEECCCCCCChhHHHHh-hcCCCccE
Q 012186 202 GLQKLTLLNLEGCPVTA-ACLDSLSALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKV 256 (469)
Q Consensus 202 ~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~ 256 (469)
+++.|++|.++.|.... ...-.+...|.|.+|++.++--.. ..+.+ ..+++|+.
T Consensus 336 kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt-~mel~~e~~~~lki 391 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDT-TMELLKEMLSHLKI 391 (419)
T ss_pred hcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCch-HHHHHHHhCccccc
Confidence 89999999999884322 222235567999999998864332 22222 34555544
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=4.3e-10 Score=95.08 Aligned_cols=126 Identities=26% Similarity=0.354 Sum_probs=58.9
Q ss_pred CCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecC
Q 012186 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284 (469)
Q Consensus 205 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 284 (469)
.|+++++++|.++.+ .++..-.|.++.|+++.|.+.... .++.+++|+.|++++|.++. ...|-..+-|+++|.+.
T Consensus 285 ~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchhhh-hhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehh
Confidence 455555555554442 233344455555555555544322 24455555555555555442 22222334455555555
Q ss_pred CCCCChHHHHHhhCCCCCCEEeccCCCCChh-hHHHhhCCCCCcEEecccCCC
Q 012186 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSS-GLRHLSGLTNLESINLSFTGI 336 (469)
Q Consensus 285 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~ 336 (469)
.|.+.. ...+..+-+|..|++.+|++... ....++++|.|+.+.+.+|.+
T Consensus 361 ~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 361 QNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 554321 22333444555555555544332 123344555555555554443
No 35
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.90 E-value=1.5e-08 Score=84.66 Aligned_cols=251 Identities=22% Similarity=0.245 Sum_probs=116.1
Q ss_pred hccCCCCCCeeeccCCCCchhhHHhhh----cCCCCcEEECCCCC---CChhH-------HHHhhcCCCccEEEccCCCC
Q 012186 199 YLKGLQKLTLLNLEGCPVTAACLDSLS----ALGSLFYLNLNRCQ---LSDDG-------CEKFSKIGSLKVLNLGFNEI 264 (469)
Q Consensus 199 ~l~~l~~L~~L~l~~~~~~~~~~~~~~----~~~~L~~L~l~~~~---~~~~~-------~~~~~~~~~L~~L~l~~~~~ 264 (469)
.+..+..+..++++||.+...-..+++ +-.+|+..+++.-. ..+.. ...+..||+|+..+++.|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 344466677777777766554333333 33555555554321 11111 12334556666666665554
Q ss_pred chHHH----HHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchH
Q 012186 265 TDECL----VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340 (469)
Q Consensus 265 ~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 340 (469)
....+ ..++..+.|.+|.+++|+++......++.- |.+| .-......-|.|+......|++....
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigka--l~~l---------a~nKKaa~kp~Le~vicgrNRlengs 173 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKA--LFHL---------AYNKKAADKPKLEVVICGRNRLENGS 173 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHH--HHHH---------HHHhhhccCCCceEEEeccchhccCc
Confidence 43222 223444556666666655432211111100 0000 00001123355555555555443322
Q ss_pred HHh----hhCCCCCcEEEccCCCCCHHHHH-----HHhcCCCCCEeecCCCCCChhHH----HHhHcCCCCCeeeeCCCC
Q 012186 341 LRK----LAGLSSLKSLNLDARQITDTGLA-----ALTSLTGLTHLDLFGARITDSGA----AYLRNFKNLRSLEICGGG 407 (469)
Q Consensus 341 ~~~----~~~~~~L~~L~l~~~~~~~~~~~-----~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~ 407 (469)
... +..-..|+.+.+..|.|...+.. .+..+.+|+.|++..|-++-... ..+..++.|+.|.+..|-
T Consensus 174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 211 11224556666665555543222 23355666666666665543322 233445566666666665
Q ss_pred CCHHHHHHH------hcCCCCCeeeccCCCCC----ChhHHHHH--HhCcccccccccCCCCCHH
Q 012186 408 LTDAGVKHI------KDLSSLTLLNLSQNCNL----TDKTLELI--SGLTGLVSLNVSNSRITSA 460 (469)
Q Consensus 408 ~~~~~~~~l------~~~~~L~~L~l~~~~~l----~~~~~~~l--~~l~~L~~L~l~~~~~~~~ 460 (469)
+...+...+ ...|+|..|....|..- .......+ +.+|-|..+.+.+|.+.+.
T Consensus 254 ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 254 LSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred hccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 554433322 12566666666666311 11111112 2467777777777777664
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.88 E-value=4.9e-10 Score=90.43 Aligned_cols=110 Identities=28% Similarity=0.368 Sum_probs=44.5
Q ss_pred CCCCCcEEEccCCCCCHHHHHHHh-cCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCe
Q 012186 346 GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424 (469)
Q Consensus 346 ~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 424 (469)
+..+++.|++.++.++.. ..+. .+.+|+.|++++|.++.. +.+..++.|+.|++++|.++.........+|+|++
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 345789999999999874 4454 578999999999999974 35777999999999999999874432246899999
Q ss_pred eeccCCCCCChh-HHHHHHhCcccccccccCCCCCHH
Q 012186 425 LNLSQNCNLTDK-TLELISGLTGLVSLNVSNSRITSA 460 (469)
Q Consensus 425 L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~ 460 (469)
|++++| .+... ....+..+|+|+.|++.+|++++.
T Consensus 93 L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 93 LYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp EE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred EECcCC-cCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 999999 55443 224577899999999999999864
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.81 E-value=1.4e-09 Score=92.11 Aligned_cols=131 Identities=26% Similarity=0.293 Sum_probs=100.7
Q ss_pred CCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEE
Q 012186 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257 (469)
Q Consensus 178 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 257 (469)
..+.|+.+++++|.++.. .....-.|+++.|+++.|.+... ..++.+++|+.|++++|.+... ...-..+.+++.|
T Consensus 282 TWq~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchhhh-hhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhhHhhhcCEeee
Confidence 345688899999888753 23456678999999999988774 4488899999999999887652 2233567899999
Q ss_pred EccCCCCchHHHHHhhCCCCCCEEecCCCCCChH-HHHHhhCCCCCCEEeccCCCCCh
Q 012186 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE-GLVNLTGLCNLKCLELSDTQVGS 314 (469)
Q Consensus 258 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~ 314 (469)
.+.+|.+.. .+.+..+-+|..|++.+|++... ....++++|-|+.+.+.+|++..
T Consensus 358 ~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 358 KLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 999988753 45677788899999999987542 34458899999999999997654
No 38
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.75 E-value=3.9e-08 Score=97.18 Aligned_cols=141 Identities=26% Similarity=0.367 Sum_probs=77.8
Q ss_pred CCCcEEecccC-CCCchHHHhhhC-CCCCcEEEccCCCCCHHHH-HHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCe
Q 012186 324 TNLESINLSFT-GISDGSLRKLAG-LSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400 (469)
Q Consensus 324 ~~L~~L~l~~~-~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 400 (469)
.+|+.|++++. .+...++..++. +|+|++|.+++-.+....+ ....++|+|..||+++..++.. ..+..+++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 45666666664 233334444443 5667766666654443322 2334666777777776666653 45556666666
Q ss_pred eeeCCCCCCH-HHHHHHhcCCCCCeeeccCCCCCChh-HHH-HH---HhCcccccccccCCCCCHHHHHhhh
Q 012186 401 LEICGGGLTD-AGVKHIKDLSSLTLLNLSQNCNLTDK-TLE-LI---SGLTGLVSLNVSNSRITSAGLRHLN 466 (469)
Q Consensus 401 L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~l~~~-~~~-~l---~~l~~L~~L~l~~~~~~~~~~~~l~ 466 (469)
|.+.+-.+.. .....+..+++|+.||+|.-.+.... ... .+ ..+|.||.||.++..+++..++.+-
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll 271 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL 271 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH
Confidence 6666655543 22334455667777777766433332 111 11 2356777777777766666655543
No 39
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.72 E-value=2.8e-07 Score=77.26 Aligned_cols=182 Identities=23% Similarity=0.229 Sum_probs=91.0
Q ss_pred hcCCCccEEEccCCCCchHHHHHhh----CCCCCCEEecCCCC---CChH-------HHHHhhCCCCCCEEeccCCCCCh
Q 012186 249 SKIGSLKVLNLGFNEITDECLVHLK----GLTNLESLNLDSCG---IGDE-------GLVNLTGLCNLKCLELSDTQVGS 314 (469)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~~~----~l~~L~~L~l~~~~---~~~~-------~~~~~~~~~~L~~L~l~~~~~~~ 314 (469)
..+..+..+++++|.+......++. +-.+|+..+++.-- ..+. ...++..||+|+..++++|.++.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 3355555666666655544444432 22344444444321 1111 12345577777777777776655
Q ss_pred hhHHH----hhCCCCCcEEecccCCCCchHHHhh-------------hCCCCCcEEEccCCCCCHHHH----HHHhcCCC
Q 012186 315 SGLRH----LSGLTNLESINLSFTGISDGSLRKL-------------AGLSSLKSLNLDARQITDTGL----AALTSLTG 373 (469)
Q Consensus 315 ~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~-------------~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~ 373 (469)
..+.. ++.-..|++|.+++|.+....-..+ +.-|.|+.+....|.+..-+. ..+....+
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN 186 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence 44333 3456777777777776543222111 123566666666555443211 22223345
Q ss_pred CCEeecCCCCCChhHHH-----HhHcCCCCCeeeeCCCCCCHHHHHHHhc----CCCCCeeeccCC
Q 012186 374 LTHLDLFGARITDSGAA-----YLRNFKNLRSLEICGGGLTDAGVKHIKD----LSSLTLLNLSQN 430 (469)
Q Consensus 374 L~~L~l~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~l~~----~~~L~~L~l~~~ 430 (469)
|+++.+..|.|...+.. .+..+.+|++|+++.|-++..+...++. -+.|+.|.+.+|
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 66666666655543322 1234556666666666555443333321 234566666666
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.71 E-value=1.8e-08 Score=99.90 Aligned_cols=105 Identities=23% Similarity=0.273 Sum_probs=48.2
Q ss_pred CcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCC
Q 012186 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405 (469)
Q Consensus 326 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 405 (469)
++.|+++++.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++.+|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 34444444444444444444444444444444444443344444444444444444444444444444444444444444
Q ss_pred CCCCHHHHHHHhcC-CCCCeeeccCC
Q 012186 406 GGLTDAGVKHIKDL-SSLTLLNLSQN 430 (469)
Q Consensus 406 ~~~~~~~~~~l~~~-~~L~~L~l~~~ 430 (469)
|.+++..|..+... .++..+++.+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChHHhhccccCceEEecCC
Confidence 44444444444321 23344444444
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.67 E-value=1.5e-09 Score=71.89 Aligned_cols=59 Identities=29% Similarity=0.447 Sum_probs=35.6
Q ss_pred CCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCC
Q 012186 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430 (469)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 430 (469)
|+|++|++++|+++...+.++..+++|+.|++++|.++...+..|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 45566666666666555555566666666666666666555555556666666666655
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.67 E-value=3.9e-08 Score=97.49 Aligned_cols=107 Identities=21% Similarity=0.302 Sum_probs=87.8
Q ss_pred CCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeecc
Q 012186 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428 (469)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 428 (469)
.++.|+++++.+.+..+..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++..|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37788888888887777788888999999999998888888888888999999999998888888888888999999999
Q ss_pred CCCCCChhHHHHHHhC-cccccccccCCC
Q 012186 429 QNCNLTDKTLELISGL-TGLVSLNVSNSR 456 (469)
Q Consensus 429 ~~~~l~~~~~~~l~~l-~~L~~L~l~~~~ 456 (469)
+| .+....|..+... .++..+++.+|+
T Consensus 499 ~N-~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GN-SLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CC-cccccCChHHhhccccCceEEecCCc
Confidence 98 6777777777653 456677777654
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.64 E-value=3.6e-09 Score=70.06 Aligned_cols=60 Identities=35% Similarity=0.486 Sum_probs=34.3
Q ss_pred CCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHHHHHHhCcccccccccCCCC
Q 012186 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457 (469)
Q Consensus 397 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 457 (469)
+|+.|++++|+++...+..|.++++|++|++++| .+....+..+.++++|+.|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4555566665555554455555556666666655 55555555555556666666655543
No 44
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.58 E-value=3.3e-08 Score=93.60 Aligned_cols=197 Identities=30% Similarity=0.380 Sum_probs=124.6
Q ss_pred EEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCC-CCCEEecCCCCCChHHHHHhhCCCCCCEEeccCC
Q 012186 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT-NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310 (469)
Q Consensus 232 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 310 (469)
.+....+.+.... ..+...+.++.+++.++.++.. +....... +|+.|+++++.+.... ..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchhhhh-hhhhccccccccccCCc
Confidence 4566665542222 2334457788888888777643 33444443 7888888888775432 34667788888888888
Q ss_pred CCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHH
Q 012186 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390 (469)
Q Consensus 311 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 390 (469)
++..... ..+..+.|+.|.++++.+.+.... ......|+++.+++|..... +..+..+.++..+.+.+|++... +.
T Consensus 174 ~l~~l~~-~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~-~~~~~~~~~l~~l~l~~n~~~~~-~~ 249 (394)
T COG4886 174 DLSDLPK-LLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLEDL-PE 249 (394)
T ss_pred hhhhhhh-hhhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceec-chhhhhcccccccccCCceeeec-cc
Confidence 7765432 223677788888888877664332 22334577777777743222 34455667777777777766653 45
Q ss_pred HhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChhHH
Q 012186 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438 (469)
Q Consensus 391 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~ 438 (469)
.+..++.++.|++++|.++.... ++...+++.|+++++ .+....+
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n-~~~~~~~ 294 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGN-SLSNALP 294 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCc-cccccch
Confidence 56667778888888887777644 666777888888877 4444443
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.57 E-value=8.7e-09 Score=97.57 Aligned_cols=176 Identities=25% Similarity=0.302 Sum_probs=118.1
Q ss_pred hhCCCCCCEEecCCCCCChHHHHHhhCC-CCCCEEeccCCCCChhhHHHhh----------CCCCCcEEecccCCCCchH
Q 012186 272 LKGLTNLESLNLDSCGIGDEGLVNLTGL-CNLKCLELSDTQVGSSGLRHLS----------GLTNLESINLSFTGISDGS 340 (469)
Q Consensus 272 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~----------~~~~L~~L~l~~~~~~~~~ 340 (469)
+..+..|+.|.+.+|.+.. ...+..+ ..|++|...+. ... ....|. ...+|...+.++|.+...
T Consensus 105 ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~S-l~A-l~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~m- 179 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNS-LDA-LRHVFASCGGDISNSPVWNKLATASFSYNRLVLM- 179 (1096)
T ss_pred eccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhcc-HHH-HHHHHHHhccccccchhhhhHhhhhcchhhHHhH-
Confidence 4456688888888887643 1222211 24554443322 111 111111 123566677777765432
Q ss_pred HHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCC
Q 012186 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420 (469)
Q Consensus 341 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 420 (469)
...+.-++.|++|+++.|+++.. +.+..|++|++|||+.|.+....--....+. |+.|.+++|.++.. ..+.++.
T Consensus 180 D~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~Lk 254 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLK 254 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhh
Confidence 23455568999999999999985 5788999999999999987764333333455 99999999998875 4677899
Q ss_pred CCCeeeccCCCCCChh-HHHHHHhCcccccccccCCCCC
Q 012186 421 SLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSNSRIT 458 (469)
Q Consensus 421 ~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~ 458 (469)
+|+.|+++.| .+.+. -.+.+..+.+|+.|+|.||++.
T Consensus 255 sL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 255 SLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 9999999999 33332 2344667889999999999975
No 46
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.54 E-value=7.4e-08 Score=91.17 Aligned_cols=201 Identities=27% Similarity=0.370 Sum_probs=146.6
Q ss_pred CeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcC-CCccEEEccCCCCchHHHHHhhCCCCCCEEecCC
Q 012186 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI-GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285 (469)
Q Consensus 207 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 285 (469)
..+....+.+... ...+...+.++.+.+.++.+.... ...... ++|+.|+++++.+.. .+..+..+++|+.|+++.
T Consensus 96 ~~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~-~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 96 PSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIP-PLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred ceeeccccccccC-chhhhcccceeEEecCCcccccCc-cccccchhhcccccccccchhh-hhhhhhccccccccccCC
Confidence 3566666665332 334455688999999998877643 333445 389999999998874 335678899999999999
Q ss_pred CCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHH
Q 012186 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365 (469)
Q Consensus 286 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 365 (469)
|.+..... ..+..+.|+.|+++++.+..... .......|+.+.++++.... .+..+..++++..+.+.++++... +
T Consensus 173 N~l~~l~~-~~~~~~~L~~L~ls~N~i~~l~~-~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~~~-~ 248 (394)
T COG4886 173 NDLSDLPK-LLSNLSNLNNLDLSGNKISDLPP-EIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLEDL-P 248 (394)
T ss_pred chhhhhhh-hhhhhhhhhheeccCCccccCch-hhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceeeec-c
Confidence 98865433 33377899999999998876443 23445569999999885322 234566778888888888877653 4
Q ss_pred HHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHH
Q 012186 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416 (469)
Q Consensus 366 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 416 (469)
..+..+++++.|++++|.++.... +....+++.|+++++.+....+...
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred chhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence 566788889999999999888654 7788999999999998887655544
No 47
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.50 E-value=1.5e-07 Score=93.19 Aligned_cols=137 Identities=24% Similarity=0.244 Sum_probs=68.7
Q ss_pred CCCCEEecCCCcccChhHhHhhh-CCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEecccccccccccccccCCCCccE
Q 012186 81 SNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159 (469)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 159 (469)
.+|+.|+++|...+....+..++ .+|.|+.|.+.+-.+..+.......++++|+.||++++. +... ..++++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 35666666654444444444443 355666666665444344444444556666666666532 2211 34555666666
Q ss_pred EEccCCCCCChhhhhcccCCCCCCEEEecccccChhh------hhhccCCCCCCeeeccCCCCchh
Q 012186 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG------IAYLKGLQKLTLLNLEGCPVTAA 219 (469)
Q Consensus 160 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~l~~l~~L~~L~l~~~~~~~~ 219 (469)
|.+.+-.........++..+++|+.||++........ ...-..+|+|+.|+.+++.+...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 6665544333344455556666666666543222111 11113455666666666555443
No 48
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.47 E-value=3.6e-09 Score=97.33 Aligned_cols=188 Identities=23% Similarity=0.230 Sum_probs=111.4
Q ss_pred EECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCC
Q 012186 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312 (469)
Q Consensus 233 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 312 (469)
.+++.|.+.. .+..+..+-.|+.+.++.|.+. ..+..+.++..|+.++++.|.+... +..++.+| |+.|.+++|.+
T Consensus 80 aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~l-p~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 80 ADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHL-PDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcC-ChhhhcCc-ceeEEEecCcc
Confidence 3444444433 2233334445555555555544 2344555666666666666655432 22344443 66666666665
Q ss_pred ChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHh
Q 012186 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392 (469)
Q Consensus 313 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 392 (469)
.. .+..++..++|..|+.+.|.+.. .+..++.+.+|+.|.+..|.+...+ ..+. .-.|.+||+++|+++. +|..|
T Consensus 156 ~~-lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~~lp-~El~-~LpLi~lDfScNkis~-iPv~f 230 (722)
T KOG0532|consen 156 TS-LPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLEDLP-EELC-SLPLIRLDFSCNKISY-LPVDF 230 (722)
T ss_pred cc-CCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhhhCC-HHHh-CCceeeeecccCceee-cchhh
Confidence 54 34445566677777777776654 3445666677777777777766653 3333 3347778888887776 46677
Q ss_pred HcCCCCCeeeeCCCCCCHHHHHHH---hcCCCCCeeeccCC
Q 012186 393 RNFKNLRSLEICGGGLTDAGVKHI---KDLSSLTLLNLSQN 430 (469)
Q Consensus 393 ~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~ 430 (469)
.+++.||+|.+.+|.++.. |..+ +..--.++|+++-|
T Consensus 231 r~m~~Lq~l~LenNPLqSP-PAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 231 RKMRHLQVLQLENNPLQSP-PAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhheeeeeccCCCCCC-hHHHHhccceeeeeeecchhc
Confidence 7788888888888877764 3333 33344677777777
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=1.5e-07 Score=79.86 Aligned_cols=202 Identities=19% Similarity=0.174 Sum_probs=116.1
Q ss_pred CCcEEECCCCCCChhHH-HHh-hcCCCccEEEccCCCCchH--HHHHhhCCCCCCEEecCCCCCChHHHHHh-hCCCCCC
Q 012186 229 SLFYLNLNRCQLSDDGC-EKF-SKIGSLKVLNLGFNEITDE--CLVHLKGLTNLESLNLDSCGIGDEGLVNL-TGLCNLK 303 (469)
Q Consensus 229 ~L~~L~l~~~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~ 303 (469)
.+.-+.+.++.+..+.. ..| ..+..++.+++.+|.+++. ....+.++|.|+.|+++.|.+..... .+ ....+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceE
Confidence 34455555666554332 223 4567889999999988864 33456788999999999887754322 22 2455888
Q ss_pred EEeccCCCCChhh-HHHhhCCCCCcEEecccCCCCch--HHHhhh-CCCCCcEEEccCCCCCHHH--HHHHhcCCCCCEe
Q 012186 304 CLELSDTQVGSSG-LRHLSGLTNLESINLSFTGISDG--SLRKLA-GLSSLKSLNLDARQITDTG--LAALTSLTGLTHL 377 (469)
Q Consensus 304 ~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~-~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L 377 (469)
.|.+.+..+.-.. -..+..+|+++.|.++.|.+... ...... .-+.++++++..|...... ...-.-+|++..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 8888887654332 23345778888888877732110 001111 1145555655555433211 1112246777777
Q ss_pred ecCCCCCChhHHH-HhHcCCCCCeeeeCCCCCCH-HHHHHHhcCCCCCeeeccCCC
Q 012186 378 DLFGARITDSGAA-YLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLSQNC 431 (469)
Q Consensus 378 ~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~ 431 (469)
.+..|++.+...+ ....+|.+..|+++.+++.. .....+.+++.|.-|.++++|
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCc
Confidence 7777766554322 23445666666666666643 223455666777777777664
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=2.4e-07 Score=78.67 Aligned_cols=185 Identities=16% Similarity=0.156 Sum_probs=104.1
Q ss_pred CCCCCCEEeCCCCCcCc-HHHHHHHhCCCCCCEEecccccccccccccc-cCCCCccEEEccCCCCCChhhhhcccCCCC
Q 012186 104 GLSNLTSLSFRRNNAIT-AQGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTN 181 (469)
Q Consensus 104 ~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 181 (469)
.+..++.+++.+|.+.. ..+...+.++|.|++|+++.|+ ....+..+ ....+|++|.+.|..--.......+..+|.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-CCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 45667777777665422 2333445577777777777754 22222233 245677888777744333444455567777
Q ss_pred CCEEEecccccChhhhh--hcc-CCCCCCeeeccCCCCchh--hHHhhhcCCCCcEEECCCCCCChhHH-HHhhcCCCcc
Q 012186 182 LKSLQISCSKVTDSGIA--YLK-GLQKLTLLNLEGCPVTAA--CLDSLSALGSLFYLNLNRCQLSDDGC-EKFSKIGSLK 255 (469)
Q Consensus 182 L~~L~l~~~~~~~~~~~--~l~-~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~ 255 (469)
++.|+++.|++...... ... --+.+++++..+|....- ....-..+|++..+-+..|.+..... .....+|.+.
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 88887777744322111 111 223566666666633211 01111235777777777776544332 3345566777
Q ss_pred EEEccCCCCchH-HHHHhhCCCCCCEEecCCCCCC
Q 012186 256 VLNLGFNEITDE-CLVHLKGLTNLESLNLDSCGIG 289 (469)
Q Consensus 256 ~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~ 289 (469)
.|+++.+++... ..+.+..++.|+.|.++++.+.
T Consensus 228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 777777776543 2345667777888887777554
No 51
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.38 E-value=9.7e-07 Score=86.26 Aligned_cols=60 Identities=38% Similarity=0.506 Sum_probs=25.4
Q ss_pred CCCccEEEccCCC-CchHHHHHhh-CCCCCCEEecCCCC-CChHHHHHhh-CCCCCCEEeccCC
Q 012186 251 IGSLKVLNLGFNE-ITDECLVHLK-GLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSDT 310 (469)
Q Consensus 251 ~~~L~~L~l~~~~-~~~~~~~~~~-~l~~L~~L~l~~~~-~~~~~~~~~~-~~~~L~~L~l~~~ 310 (469)
+++|+.++++++. +++.....+. .+++|+.|.+.+|. +++.....+. .+++|++|+++++
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 3445555554444 3333322222 24455555544443 3333333322 3444555555544
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.34 E-value=2.2e-08 Score=94.86 Aligned_cols=107 Identities=33% Similarity=0.378 Sum_probs=47.4
Q ss_pred ccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCcc
Q 012186 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255 (469)
Q Consensus 176 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 255 (469)
+..+.+|+.+++.++.+..... .+..+++|++|++++|.++.. ..+..++.|+.|++.+|.+... ..+..++.|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhh
Confidence 4445555555555555543211 144455555555555555442 2334444455555555544321 2223344455
Q ss_pred EEEccCCCCchHHHHHhhCCCCCCEEecCCCC
Q 012186 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287 (469)
Q Consensus 256 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 287 (469)
.+++++|.+..........+.+++.+.+.++.
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 55555544443221002334444444444443
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.33 E-value=2.6e-08 Score=94.32 Aligned_cols=244 Identities=31% Similarity=0.327 Sum_probs=143.8
Q ss_pred CCCCCCeeeccCCCCchhhHHhhhcCCCCcEEECCCCCCChhHHHHhhcCCCccEEEccCCCCchHHHHHhhCCCCCCEE
Q 012186 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281 (469)
Q Consensus 202 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 281 (469)
.+..++.+.+..+.+... ...+..+.+++.+++.+|.+..... .+..+++|+.|++++|.++.. ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~~-~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKI-LNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhhh-hcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhh
Confidence 445555666666655441 2335667888888888887765321 156678888888888877653 335556668888
Q ss_pred ecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhH-HHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCC
Q 012186 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360 (469)
Q Consensus 282 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 360 (469)
++.+|.+... ..+..++.|+.+++.+|.+..... . ...+.+++.+.+.++.+.... .+..+..+..+.+..+.+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccc
Confidence 8888876542 344456777888888777665443 2 456777777777777654432 122223333445555555
Q ss_pred CHHHHHHHhcCC--CCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChh-H
Q 012186 361 TDTGLAALTSLT--GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK-T 437 (469)
Q Consensus 361 ~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~-~ 437 (469)
+.. ..+..+. +|+.+++.+|.+.... ..+..+..+..+++.++.+.... .+...+.+..+....+...... .
T Consensus 221 ~~~--~~l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 295 (414)
T KOG0531|consen 221 SKL--EGLNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAI 295 (414)
T ss_pred eec--cCcccchhHHHHHHhcccCcccccc-ccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhh
Confidence 542 1122222 3778888888777532 44556777888888887765532 2334455666666666322111 1
Q ss_pred HHH--HHhCcccccccccCCCCCH
Q 012186 438 LEL--ISGLTGLVSLNVSNSRITS 459 (469)
Q Consensus 438 ~~~--l~~l~~L~~L~l~~~~~~~ 459 (469)
.+. ....+.++.+.+..++...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 296 SQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hccccccccccccccccccCcccc
Confidence 111 3455677777777776544
No 54
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.31 E-value=2.3e-08 Score=92.19 Aligned_cols=172 Identities=19% Similarity=0.110 Sum_probs=124.1
Q ss_pred ccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEEec
Q 012186 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138 (469)
Q Consensus 59 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 138 (469)
-...|++.|.+. ++|..+..|..|..+.+..+ . ....+..+.++..|.+++++.|.. ...|..+..++ |+.|.+
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n-~-~r~ip~~i~~L~~lt~l~ls~Nql--S~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHN-C-IRTIPEAICNLEALTFLDLSSNQL--SHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhc-c-ceecchhhhhhhHHHHhhhccchh--hcCChhhhcCc-ceeEEE
Confidence 344566776665 56777777777888877652 2 234577788888888889888875 55566666554 888888
Q ss_pred ccccccccccccccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEecccccChhhhhhccCCCCCCeeeccCCCCch
Q 012186 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218 (469)
Q Consensus 139 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 218 (469)
++| .+...+..++..+.|..|+.+.|+..+ .+..++++.+|+.|.+..|.+...+ ..+..++ |.+|+++.|++..
T Consensus 151 sNN-kl~~lp~~ig~~~tl~~ld~s~nei~s--lpsql~~l~slr~l~vrRn~l~~lp-~El~~Lp-Li~lDfScNkis~ 225 (722)
T KOG0532|consen 151 SNN-KLTSLPEEIGLLPTLAHLDVSKNEIQS--LPSQLGYLTSLRDLNVRRNHLEDLP-EELCSLP-LIRLDFSCNKISY 225 (722)
T ss_pred ecC-ccccCCcccccchhHHHhhhhhhhhhh--chHHhhhHHHHHHHHHhhhhhhhCC-HHHhCCc-eeeeecccCceee
Confidence 875 566777777888888888888765444 5677778888888888887776443 3344444 7788888888776
Q ss_pred hhHHhhhcCCCCcEEECCCCCCCh
Q 012186 219 ACLDSLSALGSLFYLNLNRCQLSD 242 (469)
Q Consensus 219 ~~~~~~~~~~~L~~L~l~~~~~~~ 242 (469)
+ |..|.++..|++|.+.+|.+..
T Consensus 226 i-Pv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 226 L-PVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred c-chhhhhhhhheeeeeccCCCCC
Confidence 5 6678888888888888888765
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.20 E-value=4.2e-08 Score=93.10 Aligned_cols=125 Identities=23% Similarity=0.256 Sum_probs=55.6
Q ss_pred CCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccC
Q 012186 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357 (469)
Q Consensus 278 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 357 (469)
|...+.+.|.+.. ...++.-++.++.|+++.|.+.+.. .+..+++|+.|+|++|.+....--....|. |..|.+++
T Consensus 166 L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 3344444443321 2233444455555566555554422 455555555555555544332211111222 55555555
Q ss_pred CCCCHHHHHHHhcCCCCCEeecCCCCCChhH-HHHhHcCCCCCeeeeCCCCC
Q 012186 358 RQITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRNFKNLRSLEICGGGL 408 (469)
Q Consensus 358 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~ 408 (469)
|.++. ...+.++.+|+.||++.|-+.+.- ...+..+..|.+|++.+|.+
T Consensus 242 N~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 55544 233445555555555555433211 11122344455555555443
No 56
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.99 E-value=1.8e-05 Score=77.34 Aligned_cols=187 Identities=30% Similarity=0.290 Sum_probs=97.2
Q ss_pred cCCCccEEEccCCC-CchH-HHHHhhCCCCCCEEecCCC-C-CChH---HHHHhhCCCCCCEEeccCCC-CChhhHHHhh
Q 012186 250 KIGSLKVLNLGFNE-ITDE-CLVHLKGLTNLESLNLDSC-G-IGDE---GLVNLTGLCNLKCLELSDTQ-VGSSGLRHLS 321 (469)
Q Consensus 250 ~~~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~-~-~~~~---~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~ 321 (469)
..+.|+.+.+.++. +... .......++.|+.|+++++ . .... .......+++|+.+++..+. +++.....+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 45677777766553 2221 2334456677777777652 1 1111 11122345666777776665 5555554444
Q ss_pred -CCCCCcEEecccCC-CCchHHHhhh-CCCCCcEEEccCCCCC-HHH-HHHHhcCCCCCEeecCCCCCChhHHHHhHcCC
Q 012186 322 -GLTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQIT-DTG-LAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396 (469)
Q Consensus 322 -~~~~L~~L~l~~~~-~~~~~~~~~~-~~~~L~~L~l~~~~~~-~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 396 (469)
.+++|+.|.+.+|. +++.....+. .+++|++|+++++... ... .....++++++.+.+....- ++
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~ 335 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CP 335 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Cc
Confidence 36677777766664 4555544443 4666777777665432 221 12233466666555443321 33
Q ss_pred CCCeeeeCCCCC---CHHHHHHHhcCCCCCeeeccCCCCCChhH-HHHHHhCccc
Q 012186 397 NLRSLEICGGGL---TDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGL 447 (469)
Q Consensus 397 ~L~~L~l~~~~~---~~~~~~~l~~~~~L~~L~l~~~~~l~~~~-~~~l~~l~~L 447 (469)
.++.+.+.++.. ..........++.++.+.+..+. ..... ...+.+++.|
T Consensus 336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNL 389 (482)
T ss_pred cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCccc
Confidence 333344333222 12222344678888888888885 55544 3555667666
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.95 E-value=4.7e-06 Score=62.53 Aligned_cols=109 Identities=20% Similarity=0.195 Sum_probs=65.9
Q ss_pred CCcEEecccCCCCc--hHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeee
Q 012186 325 NLESINLSFTGISD--GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402 (469)
Q Consensus 325 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 402 (469)
.+..++++.|++.. ..+..+.....|+..++++|.+...+...-..+|.++.+++.+|.+++. |+.+..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhcc
Confidence 34556666665432 1233444556666677777777665555445666677777777777664 44466777777777
Q ss_pred eCCCCCCHHHHHHHhcCCCCCeeeccCCCCCChh
Q 012186 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436 (469)
Q Consensus 403 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~ 436 (469)
+++|.+... |+.+..+.+|-.|+..+| .+..+
T Consensus 107 l~~N~l~~~-p~vi~~L~~l~~Lds~~n-a~~ei 138 (177)
T KOG4579|consen 107 LRFNPLNAE-PRVIAPLIKLDMLDSPEN-ARAEI 138 (177)
T ss_pred cccCccccc-hHHHHHHHhHHHhcCCCC-ccccC
Confidence 777766554 555555666666766666 44433
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=4.6e-06 Score=70.40 Aligned_cols=101 Identities=23% Similarity=0.239 Sum_probs=64.6
Q ss_pred CCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHH-HHHHhcCCCCCee
Q 012186 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLL 425 (469)
Q Consensus 347 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L 425 (469)
+.+.++|++++|.+.++ .....||.|+.|.++-|+|+.. ..+..|.+|++|.+..|.|.... .+.+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34566777777777764 3345777777777777777763 34556777777777777776542 2345677777777
Q ss_pred eccCCCCCChhHHH----HHHhCccccccc
Q 012186 426 NLSQNCNLTDKTLE----LISGLTGLVSLN 451 (469)
Q Consensus 426 ~l~~~~~l~~~~~~----~l~~l~~L~~L~ 451 (469)
.|..|+.....++. .+.-+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77777655444432 345567776664
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.79 E-value=7.8e-06 Score=61.41 Aligned_cols=112 Identities=21% Similarity=0.212 Sum_probs=77.1
Q ss_pred CCEEeccCCCCCh--hhHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeec
Q 012186 302 LKCLELSDTQVGS--SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379 (469)
Q Consensus 302 L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 379 (469)
+-.++++.|++.. ..+..+.....|+..++++|.+.+..+.....+|..+.+++++|.+.+.+. .++.+|.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPe-E~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPE-ELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchH-HHhhhHHhhhccc
Confidence 3455666665442 223445566777888888887776665555667788888888888887744 4888888888888
Q ss_pred CCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHH
Q 012186 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415 (469)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 415 (469)
..|++... |..+..+.++-.|+..+|...++....
T Consensus 108 ~~N~l~~~-p~vi~~L~~l~~Lds~~na~~eid~dl 142 (177)
T KOG4579|consen 108 RFNPLNAE-PRVIAPLIKLDMLDSPENARAEIDVDL 142 (177)
T ss_pred ccCccccc-hHHHHHHHhHHHhcCCCCccccCcHHH
Confidence 88887765 344444777778888887776664443
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.57 E-value=6.6e-05 Score=45.25 Aligned_cols=33 Identities=36% Similarity=0.557 Sum_probs=14.1
Q ss_pred CCCeeeeCCCCCCHHHHHHHhcCCCCCeeeccCC
Q 012186 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430 (469)
Q Consensus 397 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 430 (469)
+|++|++++|++++..+ .++++++|+.|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCc-hHhCCCCCCEEEecCC
Confidence 34444444444444322 3444445555555544
No 61
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=8.4e-05 Score=60.01 Aligned_cols=84 Identities=23% Similarity=0.318 Sum_probs=51.9
Q ss_pred CCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChh-HHHHhH-cCCCCCeeeeCCC-CCCHHHHHHHhcCCCCCee
Q 012186 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLR-NFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLL 425 (469)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~-~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L 425 (469)
.++.++-+++.+...+...+.+++.++.|.+.+|+..+. ..+.+. -.++|+.|++++| +||+.+..++..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 356677777777777777777777777777777754332 222222 2356666666654 4666666666666666666
Q ss_pred eccCCCC
Q 012186 426 NLSQNCN 432 (469)
Q Consensus 426 ~l~~~~~ 432 (469)
.+.+=+.
T Consensus 182 ~l~~l~~ 188 (221)
T KOG3864|consen 182 HLYDLPY 188 (221)
T ss_pred HhcCchh
Confidence 6665543
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.52 E-value=4.5e-05 Score=61.47 Aligned_cols=79 Identities=23% Similarity=0.313 Sum_probs=36.7
Q ss_pred CcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHH-HHHhcCCCCCeeecc
Q 012186 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLS 428 (469)
Q Consensus 350 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~ 428 (469)
...+++++|++.. ...+..++.|.+|.+.+|.++.+.|..-.-++.|+.|.+.+|.+.+... .-+..||+|++|.+-
T Consensus 44 ~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 3344444444443 2334444555555555555554443333334555555555555444321 123445555555555
Q ss_pred CC
Q 012186 429 QN 430 (469)
Q Consensus 429 ~~ 430 (469)
+|
T Consensus 122 ~N 123 (233)
T KOG1644|consen 122 GN 123 (233)
T ss_pred CC
Confidence 55
No 63
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.51 E-value=9.8e-05 Score=44.48 Aligned_cols=35 Identities=34% Similarity=0.504 Sum_probs=12.8
Q ss_pred CCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCC
Q 012186 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409 (469)
Q Consensus 374 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 409 (469)
|++|++++|++++. +..+.++++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQITDL-PPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCC
Confidence 34444444444432 122334444444444444433
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.44 E-value=0.00015 Score=66.54 Aligned_cols=137 Identities=12% Similarity=0.107 Sum_probs=64.3
Q ss_pred hhcCCCccEEEccCCCCchHHHHHhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCC-CCChhhHHHhhCCCCC
Q 012186 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNL 326 (469)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L 326 (469)
+..+.+++.|++++|.+... | .-.++|+.|.+++|.--...+..+ .++|+.|.+.+| .+.. -.+.|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-------LP~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-------LPESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-------ccccc
Confidence 34467777777777765532 2 122357777777653211222222 246777777766 2221 12456
Q ss_pred cEEecccCCCCchHHHhhhCC-CCCcEEEccCCC-CCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeC
Q 012186 327 ESINLSFTGISDGSLRKLAGL-SSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404 (469)
Q Consensus 327 ~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 404 (469)
+.|.+.++.... +..+ ++|+.|.+.+++ ........ .-.++|++|++++|.... .|..+ ..+|+.|.++
T Consensus 115 e~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~-~LPsSLk~L~Is~c~~i~-LP~~L--P~SLk~L~ls 185 (426)
T PRK15386 115 RSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDN-LISPSLKTLSLTGCSNII-LPEKL--PESLQSITLH 185 (426)
T ss_pred ceEEeCCCCCcc-----cccCcchHhheecccccccccccccc-ccCCcccEEEecCCCccc-Ccccc--cccCcEEEec
Confidence 666665443321 1122 356666654322 10000000 011466777776665432 12222 2466666666
Q ss_pred CC
Q 012186 405 GG 406 (469)
Q Consensus 405 ~~ 406 (469)
.+
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 54
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.40 E-value=7e-05 Score=58.36 Aligned_cols=9 Identities=33% Similarity=0.630 Sum_probs=3.2
Q ss_pred CCCCCEeec
Q 012186 371 LTGLTHLDL 379 (469)
Q Consensus 371 ~~~L~~L~l 379 (469)
+++|+.+.+
T Consensus 80 ~~~l~~i~~ 88 (129)
T PF13306_consen 80 CTNLKNIDI 88 (129)
T ss_dssp -TTECEEEE
T ss_pred ccccccccc
Confidence 334444443
No 66
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.35 E-value=0.00028 Score=57.04 Aligned_cols=105 Identities=22% Similarity=0.177 Sum_probs=65.7
Q ss_pred CCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEE
Q 012186 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (469)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (469)
.+...+||++|++.. ..-|.++++|..|.+++ +.|+...+.--.-+++|..|.+.+|.+..-....-+..|++|++|
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecC-CcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 466778888877643 24467778888888877 467766555555567788888887765333333445667777777
Q ss_pred eccccccccccc---ccccCCCCccEEEccC
Q 012186 137 DLERCTRIHGGL---VNLKGLMKLESLNIKW 164 (469)
Q Consensus 137 ~l~~~~~~~~~~---~~l~~l~~L~~L~l~~ 164 (469)
.+-+|+.-...- -.+.++|+|++|+..+
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 776654322211 2345666666666654
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.23 E-value=0.00014 Score=61.33 Aligned_cols=105 Identities=25% Similarity=0.340 Sum_probs=51.2
Q ss_pred CCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCC--CCCHHHHHHHhcCCCCCEeecCCCCCChhH-HHHhHcCCCCC
Q 012186 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR--QITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRNFKNLR 399 (469)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~ 399 (469)
+..|+.+++.++.++. ...++.+|+|+.|.++.| .+..........+|+|+++++++|++.... ...+..+++|.
T Consensus 42 ~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 3445555555544432 234455667777777766 333222222234577777777777665311 12234455566
Q ss_pred eeeeCCCCCCHHH---HHHHhcCCCCCeeeccC
Q 012186 400 SLEICGGGLTDAG---VKHIKDLSSLTLLNLSQ 429 (469)
Q Consensus 400 ~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~ 429 (469)
.|++.+|..+... -..|.-+++|++|+-.+
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 6666665544311 11223345555554433
No 68
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.00024 Score=57.51 Aligned_cols=84 Identities=32% Similarity=0.430 Sum_probs=65.0
Q ss_pred CccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhC-CCCCCEEeCCCCCcCcHHHHHHHhCCCCCCEE
Q 012186 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (469)
Q Consensus 58 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (469)
.++.++-+++.|..+....+..++.++.|.+.+|..+.+...+.+++ .++|+.|++++|..+++.....+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 46777777888877777888888888888888887777777777654 45888888888887777777778888888888
Q ss_pred ecccc
Q 012186 137 DLERC 141 (469)
Q Consensus 137 ~l~~~ 141 (469)
.+.+-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 77663
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.18 E-value=0.00046 Score=53.66 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=11.1
Q ss_pred ccCCCCccEEEccCCCCCChhhhhcccCCCCCCEEEec
Q 012186 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188 (469)
Q Consensus 151 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 188 (469)
+..+.+|+.+.+.. .+.......+.++++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~ 43 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFP 43 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEES
T ss_pred HhCCCCCCEEEECC--CeeEeChhhccccccccccccc
Confidence 33444444444432 1222233334444444444443
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=4.8e-05 Score=64.45 Aligned_cols=101 Identities=20% Similarity=0.188 Sum_probs=70.1
Q ss_pred CCCccEEEecCCCCChHhhHhhhcCCCCCEEecCCCcccChhHhHhhhCCCCCCEEeCCCCCcCcHHHHHHHhCCCCCCE
Q 012186 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (469)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (469)
..+++.|++-++.+++. ....+++.|++|.|+- ++|+. ...+..|++|++|+|..|.+........+.++++|++
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSv-NkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSV-NKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeec-ccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 45778888888888764 3346888888888887 35544 5567788888888888887655555677788888888
Q ss_pred Eeccccccccccc-----ccccCCCCccEEE
Q 012186 136 LDLERCTRIHGGL-----VNLKGLMKLESLN 161 (469)
Q Consensus 136 L~l~~~~~~~~~~-----~~l~~l~~L~~L~ 161 (469)
|-+..|+...... ..+..+|+|+.|+
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8887776544333 2244566666665
No 71
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.05 E-value=0.001 Score=61.14 Aligned_cols=137 Identities=15% Similarity=0.166 Sum_probs=86.2
Q ss_pred HhhCCCCCCEEecCCCCCChHHHHHhhCCCCCCEEeccCCCCChhhHHHhhCCCCCcEEecccC-CCCchHHHhhhCCCC
Q 012186 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSS 349 (469)
Q Consensus 271 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~ 349 (469)
.+..+.+++.|++++|.+...+ . -.++|+.|.+.+|..-...+..+ .++|+.|.+++| .+.. .| ++
T Consensus 47 r~~~~~~l~~L~Is~c~L~sLP--~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-LP------~s 113 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESLP--V--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-LP------ES 113 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcccC--C--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-cc------cc
Confidence 3556789999999999776442 1 23479999998874433333322 368999999988 4432 22 56
Q ss_pred CcEEEccCCCCCHHHHHHHhcC-CCCCEeecCCCCCC-h-hHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCCCCCeee
Q 012186 350 LKSLNLDARQITDTGLAALTSL-TGLTHLDLFGARIT-D-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426 (469)
Q Consensus 350 L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~-~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 426 (469)
|+.|.+..+.... +..+ ++|+.|.+.++... . ..+.. -.++|+.|++++|..... |..+ ..+|+.|+
T Consensus 114 Le~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~L-P~~L--P~SLk~L~ 183 (426)
T PRK15386 114 VRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIIL-PEKL--PESLQSIT 183 (426)
T ss_pred cceEEeCCCCCcc-----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcccC-cccc--cccCcEEE
Confidence 8888887655443 2223 36788887543211 1 01111 136899999999886543 3322 35899999
Q ss_pred ccCC
Q 012186 427 LSQN 430 (469)
Q Consensus 427 l~~~ 430 (469)
++.+
T Consensus 184 ls~n 187 (426)
T PRK15386 184 LHIE 187 (426)
T ss_pred eccc
Confidence 9876
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.95 E-value=0.00028 Score=67.24 Aligned_cols=177 Identities=32% Similarity=0.438 Sum_probs=90.2
Q ss_pred ccEEEccCCCCchHH----HHHhhCCCCCCEEecCCCCCChHHHHHhh----CC-CCCCEEeccCCCCChhhHH----Hh
Q 012186 254 LKVLNLGFNEITDEC----LVHLKGLTNLESLNLDSCGIGDEGLVNLT----GL-CNLKCLELSDTQVGSSGLR----HL 320 (469)
Q Consensus 254 L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~~-~~L~~L~l~~~~~~~~~~~----~~ 320 (469)
+..+.+.+|.+.+.. ...+...+.|..|++++|.+++.....+. .. +.+++|.+..|.+...... .+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 667777777765432 23446667888888888877755544433 11 3455666666655443322 23
Q ss_pred hCCCCCcEEecccCCCCchHH----Hhhh----CCCCCcEEEccCCCCCHHHH----HHHhcCCC-CCEeecCCCCCChh
Q 012186 321 SGLTNLESINLSFTGISDGSL----RKLA----GLSSLKSLNLDARQITDTGL----AALTSLTG-LTHLDLFGARITDS 387 (469)
Q Consensus 321 ~~~~~L~~L~l~~~~~~~~~~----~~~~----~~~~L~~L~l~~~~~~~~~~----~~l~~~~~-L~~L~l~~~~~~~~ 387 (469)
...+.++.++++.|.+..... ..+. ...++++|++.+|.++.... ..+...+. +.++++.+|++.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 345666777776665532221 1122 23456666666665554322 12223333 44556666555543
Q ss_pred HHH----HhHcC-CCCCeeeeCCCCCCHHHHHHH----hcCCCCCeeeccCC
Q 012186 388 GAA----YLRNF-KNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQN 430 (469)
Q Consensus 388 ~~~----~~~~~-~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~ 430 (469)
+.. .+..+ +.+++++++.|.+++.....+ ..++.++.+.++.|
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n 300 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN 300 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC
Confidence 222 12222 344555555555554333222 23445555555555
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.94 E-value=0.00032 Score=66.88 Aligned_cols=108 Identities=32% Similarity=0.456 Sum_probs=50.4
Q ss_pred CCCCcEEecccCCCCchHHH----hhhCCCC-CcEEEccCCCCCHHHHHH----HhcC-CCCCEeecCCCCCChhHHH--
Q 012186 323 LTNLESINLSFTGISDGSLR----KLAGLSS-LKSLNLDARQITDTGLAA----LTSL-TGLTHLDLFGARITDSGAA-- 390 (469)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~~~----~~~~~~~-L~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~~~~~~~~-- 390 (469)
..+++.|++.+|.++..... .+...+. +..+++..|.+.+.+... +..+ +.+++++++.|.+++....
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 34455555555554433222 1222233 444555555555443322 2223 3456666666665543332
Q ss_pred --HhHcCCCCCeeeeCCCCCCHHHHHHH----hcCCCCCeeeccCC
Q 012186 391 --YLRNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQN 430 (469)
Q Consensus 391 --~~~~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~ 430 (469)
.+..++.++.+.+.+|.+.+...... .....+.++.+.++
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~ 328 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGT 328 (478)
T ss_pred HHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcccc
Confidence 33445566666666666655433222 22344555555544
No 74
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.65 E-value=0.00092 Score=34.21 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=18.6
Q ss_pred CcccccccccCCCCCHHHHHhhhh
Q 012186 444 LTGLVSLNVSNSRITSAGLRHLNH 467 (469)
Q Consensus 444 l~~L~~L~l~~~~~~~~~~~~l~~ 467 (469)
+++|+.|+|++|+++++|+..|++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~~ 24 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALAN 24 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhCC
Confidence 478899999999999999998874
No 75
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.62 E-value=0.00089 Score=56.60 Aligned_cols=15 Identities=33% Similarity=0.487 Sum_probs=7.2
Q ss_pred ccCCCCCCEEEeccc
Q 012186 176 LSGLTNLKSLQISCS 190 (469)
Q Consensus 176 ~~~~~~L~~L~l~~~ 190 (469)
+..+++|++|.+++|
T Consensus 61 ~P~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDN 75 (260)
T ss_pred CCCcchhhhhcccCC
Confidence 334445555555544
No 76
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=96.03 E-value=0.005 Score=32.78 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.4
Q ss_pred cccccccccCCCCCHHHHHhhhhc
Q 012186 445 TGLVSLNVSNSRITSAGLRHLNHA 468 (469)
Q Consensus 445 ~~L~~L~l~~~~~~~~~~~~l~~~ 468 (469)
++|+.|+|++|.++++|...|+++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHH
Confidence 578999999999999999998874
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=95.95 E-value=0.0072 Score=31.54 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=17.3
Q ss_pred CcccccccccCC-CCCHHHHHhhhh
Q 012186 444 LTGLVSLNVSNS-RITSAGLRHLNH 467 (469)
Q Consensus 444 l~~L~~L~l~~~-~~~~~~~~~l~~ 467 (469)
+++|+.|+|++| ++++.|+.++++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 467777777777 477777777765
No 78
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=94.36 E-value=0.05 Score=28.29 Aligned_cols=24 Identities=46% Similarity=0.884 Sum_probs=15.9
Q ss_pred CCCCCEEecCCCcccChhHhHhhh
Q 012186 80 CSNLQSLDFNFCIQISDGGLEHLR 103 (469)
Q Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~l~ 103 (469)
|++|+.|++++|..+++.+...+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 566777777777777776655543
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.74 E-value=0.082 Score=26.81 Aligned_cols=14 Identities=50% Similarity=0.636 Sum_probs=4.6
Q ss_pred CCCEeecCCCCCCh
Q 012186 373 GLTHLDLFGARITD 386 (469)
Q Consensus 373 ~L~~L~l~~~~~~~ 386 (469)
+|++|++++|++++
T Consensus 3 ~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 3 NLETLDLSNNQITD 16 (24)
T ss_dssp T-SEEE-TSSBEHH
T ss_pred CCCEEEccCCcCCH
Confidence 33333443333333
No 80
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.92 E-value=0.053 Score=26.87 Aligned_cols=18 Identities=39% Similarity=0.397 Sum_probs=9.1
Q ss_pred ccEEEecCCCCChHhhHhh
Q 012186 59 LLSVDLSGSDVTDSGLIHL 77 (469)
Q Consensus 59 l~~L~l~~~~~~~~~~~~~ 77 (469)
+++|++++|.++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455555555555 344333
No 81
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.65 E-value=0.071 Score=24.47 Aligned_cols=13 Identities=46% Similarity=0.738 Sum_probs=5.5
Q ss_pred ccccccccCCCCC
Q 012186 446 GLVSLNVSNSRIT 458 (469)
Q Consensus 446 ~L~~L~l~~~~~~ 458 (469)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=82.42 E-value=1.2 Score=22.93 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=5.7
Q ss_pred CCCEeecCCCCCCh
Q 012186 373 GLTHLDLFGARITD 386 (469)
Q Consensus 373 ~L~~L~l~~~~~~~ 386 (469)
+|+.|++++|.+..
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00370 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 34444444444333
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=82.42 E-value=1.2 Score=22.93 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=5.7
Q ss_pred CCCEeecCCCCCCh
Q 012186 373 GLTHLDLFGARITD 386 (469)
Q Consensus 373 ~L~~L~l~~~~~~~ 386 (469)
+|+.|++++|.+..
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00369 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 34444444444333
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=71.15 E-value=5.4 Score=38.43 Aligned_cols=62 Identities=23% Similarity=0.260 Sum_probs=34.2
Q ss_pred CCCCCcEEEccCCCCCHHH-HHH-HhcCCCCCEeecCCC--CCChhHHHHhH--cCCCCCeeeeCCCCCC
Q 012186 346 GLSSLKSLNLDARQITDTG-LAA-LTSLTGLTHLDLFGA--RITDSGAAYLR--NFKNLRSLEICGGGLT 409 (469)
Q Consensus 346 ~~~~L~~L~l~~~~~~~~~-~~~-l~~~~~L~~L~l~~~--~~~~~~~~~~~--~~~~L~~L~l~~~~~~ 409 (469)
+.|.+..+.+++|++.... ... -...|+|+.|+|++| .+... .++. ....|++|.+.||.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccc
Confidence 4577777777777665531 111 224577777777777 33321 2222 2344566666666654
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=61.44 E-value=0.19 Score=42.22 Aligned_cols=88 Identities=16% Similarity=0.159 Sum_probs=56.6
Q ss_pred HHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcCCCCCeeeeCCCCCCHHHHHHHhcCC
Q 012186 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420 (469)
Q Consensus 341 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 420 (469)
...+..+...+.|+++.+++.... ..+..+..|.+|+++.|.+.- .|..+.+...+..++..+|..... |..++..+
T Consensus 35 v~ei~~~kr~tvld~~s~r~vn~~-~n~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~~~~-p~s~~k~~ 111 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRLVNLG-KNFSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNHSQQ-PKSQKKEP 111 (326)
T ss_pred hhhhhccceeeeehhhhhHHHhhc-cchHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccchhhC-CccccccC
Confidence 344556677888888777665432 223344566777777765543 355556666667777777666554 66677778
Q ss_pred CCCeeeccCCC
Q 012186 421 SLTLLNLSQNC 431 (469)
Q Consensus 421 ~L~~L~l~~~~ 431 (469)
.+++++..+++
T Consensus 112 ~~k~~e~k~~~ 122 (326)
T KOG0473|consen 112 HPKKNEQKKTE 122 (326)
T ss_pred CcchhhhccCc
Confidence 88888888874
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=59.20 E-value=16 Score=35.39 Aligned_cols=65 Identities=23% Similarity=0.249 Sum_probs=43.3
Q ss_pred hCCCCCcEEecccCCCCchH-HHhh-hCCCCCcEEEccCC--CCCHHHHHHHh--cCCCCCEeecCCCCCChh
Q 012186 321 SGLTNLESINLSFTGISDGS-LRKL-AGLSSLKSLNLDAR--QITDTGLAALT--SLTGLTHLDLFGARITDS 387 (469)
Q Consensus 321 ~~~~~L~~L~l~~~~~~~~~-~~~~-~~~~~L~~L~l~~~--~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~ 387 (469)
.+.|.+..+.+++|++.... ...+ ...|+|..|+|++| .+.. ...+. +...|++|.+.||++...
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccc
Confidence 36788889999998765432 1222 24699999999998 3332 22232 345688999999987653
No 87
>PF14162 YozD: YozD-like protein
Probab=57.74 E-value=13 Score=22.64 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhccCCCHH
Q 012186 4 RDISQQIFNELVYSRCLTEV 23 (469)
Q Consensus 4 ~e~~~~~~~~lv~~~~~~~~ 23 (469)
||+|+-+|++|+.|.++...
T Consensus 11 EEIAefFy~eL~kRGyvP~e 30 (57)
T PF14162_consen 11 EEIAEFFYHELVKRGYVPTE 30 (57)
T ss_pred HHHHHHHHHHHHHccCCCcH
Confidence 78999999999999998643
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=56.41 E-value=5.5 Score=20.63 Aligned_cols=15 Identities=53% Similarity=0.669 Sum_probs=8.9
Q ss_pred cccccccccCCCCCH
Q 012186 445 TGLVSLNVSNSRITS 459 (469)
Q Consensus 445 ~~L~~L~l~~~~~~~ 459 (469)
++|+.|++++|++++
T Consensus 2 ~~L~~L~vs~N~Lt~ 16 (26)
T smart00364 2 PSLKELNVSNNQLTS 16 (26)
T ss_pred cccceeecCCCcccc
Confidence 356666666666554
No 89
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=56.25 E-value=0.34 Score=40.76 Aligned_cols=93 Identities=11% Similarity=0.069 Sum_probs=62.9
Q ss_pred hHHHhhCCCCCcEEecccCCCCchHHHhhhCCCCCcEEEccCCCCCHHHHHHHhcCCCCCEeecCCCCCChhHHHHhHcC
Q 012186 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395 (469)
Q Consensus 316 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 395 (469)
....+..+...+.|+++.+.+.... ..+.-++.+..++++.+++... +..+.....++.++..+|..+. .|.++...
T Consensus 34 ~v~ei~~~kr~tvld~~s~r~vn~~-~n~s~~t~~~rl~~sknq~~~~-~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~ 110 (326)
T KOG0473|consen 34 PVREIASFKRVTVLDLSSNRLVNLG-KNFSILTRLVRLDLSKNQIKFL-PKDAKQQRETVNAASHKNNHSQ-QPKSQKKE 110 (326)
T ss_pred chhhhhccceeeeehhhhhHHHhhc-cchHHHHHHHHHhccHhhHhhC-hhhHHHHHHHHHHHhhccchhh-CCcccccc
Confidence 3455667788888888887654322 2334456788888888776654 3444455556667777666554 47778888
Q ss_pred CCCCeeeeCCCCCCHH
Q 012186 396 KNLRSLEICGGGLTDA 411 (469)
Q Consensus 396 ~~L~~L~l~~~~~~~~ 411 (469)
+.++.++..++.++..
T Consensus 111 ~~~k~~e~k~~~~~~~ 126 (326)
T KOG0473|consen 111 PHPKKNEQKKTEFFRK 126 (326)
T ss_pred CCcchhhhccCcchHH
Confidence 9999999988876554
No 90
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=54.96 E-value=10 Score=19.66 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=6.1
Q ss_pred CCCEeecCCCCCC
Q 012186 373 GLTHLDLFGARIT 385 (469)
Q Consensus 373 ~L~~L~l~~~~~~ 385 (469)
+|+.|+++.|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4444555544443
No 91
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=23.59 E-value=90 Score=26.38 Aligned_cols=14 Identities=21% Similarity=0.290 Sum_probs=6.0
Q ss_pred cccccccCCCCCHH
Q 012186 447 LVSLNVSNSRITSA 460 (469)
Q Consensus 447 L~~L~l~~~~~~~~ 460 (469)
|++-++++-++.+.
T Consensus 273 LQeAnLRg~Nlk~A 286 (302)
T KOG1665|consen 273 LQEANLRGVNLKEA 286 (302)
T ss_pred hhHhhcccCchhhH
Confidence 34444444444443
Done!